Citrus Sinensis ID: 007461
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 603 | 2.2.26 [Sep-21-2011] | |||||||
| Q66GP4 | 609 | Pentatricopeptide repeat- | yes | no | 0.864 | 0.855 | 0.569 | 1e-175 | |
| Q9LFF1 | 754 | Pentatricopeptide repeat- | no | no | 0.900 | 0.720 | 0.216 | 7e-33 | |
| Q8S8P6 | 624 | Pentatricopeptide repeat- | no | no | 0.648 | 0.626 | 0.239 | 2e-31 | |
| Q9LYZ9 | 819 | Pentatricopeptide repeat- | no | no | 0.747 | 0.550 | 0.213 | 2e-31 | |
| Q9LW84 | 642 | Pentatricopeptide repeat- | no | no | 0.643 | 0.604 | 0.251 | 3e-31 | |
| Q9M907 | 871 | Pentatricopeptide repeat- | no | no | 0.819 | 0.567 | 0.225 | 8e-31 | |
| Q6NQ83 | 619 | Pentatricopeptide repeat- | no | no | 0.860 | 0.838 | 0.222 | 3e-28 | |
| O82178 | 591 | Pentatricopeptide repeat- | no | no | 0.542 | 0.553 | 0.255 | 4e-28 | |
| Q9FIT7 | 974 | Pentatricopeptide repeat- | no | no | 0.742 | 0.459 | 0.209 | 5e-28 | |
| Q9SXD1 | 630 | Pentatricopeptide repeat- | no | no | 0.739 | 0.707 | 0.223 | 7e-28 |
| >sp|Q66GP4|PP379_ARATH Pentatricopeptide repeat-containing protein At5g13770, chloroplastic OS=Arabidopsis thaliana GN=At5g13770 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 613 bits (1582), Expect = e-175, Method: Compositional matrix adjust.
Identities = 300/527 (56%), Positives = 396/527 (75%), Gaps = 6/527 (1%)
Query: 78 PDAKKFDSFLHGMLKDPQTQELAYDYYNEAKKLPEFRPEKSTLKLLIRYLVQSKKWDSIV 137
P + L L+DP+T++L+ ++Y +AK+ E R T K LI YLV SK WD +V
Sbjct: 69 PGPNDLNRVLSRFLRDPETRKLSSEFYEKAKENSELR----TTKHLISYLVSSKSWDLLV 124
Query: 138 SLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYN 197
S+ ED + + LPD TCS L+ SC+R RKF+I + LL VF +D +A+ A ++AM G+N
Sbjct: 125 SVCEDLREHKALPDGQTCSNLIRSCIRDRKFRITHCLLSVFRSDKSLAVSASDAAMKGFN 184
Query: 198 KLHMYYSTILVYEKMK-SAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLD-ST 255
KL MY STI V++++K S G+ GCYC+IMEA+ KIG++ KV LF E KS++L
Sbjct: 185 KLQMYSSTIQVFDRLKQSVGVEPSPGCYCRIMEAHEKIGENHKVVELFQEFKSQRLSFLA 244
Query: 256 PFSTHMYKILCDSLGKSGRAFEALKFFRDMKEKGILEDPSIYASLICSFASITEVKLAEE 315
S +Y I+C SL KSGRAFEAL+ +MK+KGI E +Y+ LI +FA EV + E+
Sbjct: 245 KESGSIYTIVCSSLAKSGRAFEALEVLEEMKDKGIPESSELYSMLIRAFAEAREVVITEK 304
Query: 316 LFKEAEEKGMLRDPEVCLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFS 375
LFKEA K +L+DPE+CLK+VLMY+ EG +E TL+VV +M+ A+LK++DCI CAIVNGFS
Sbjct: 305 LFKEAGGKKLLKDPEMCLKVVLMYVREGNMETTLEVVAAMRKAELKVTDCILCAIVNGFS 364
Query: 376 KRRGYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQKGFDKCVV 435
K+RG+ AVKVYE + + C GQVTYA INAYCR+ Y+KAE +F EM +KGFDKCVV
Sbjct: 365 KQRGFAEAVKVYEWAMKEECEAGQVTYAIAINAYCRLEKYNKAEMLFDEMVKKGFDKCVV 424
Query: 436 AYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEM 495
AYS+++ MYGKT R+ DA+ L+AKMK +GC+PN+WIYNSL+DMHGRA +LR+ EK+WKEM
Sbjct: 425 AYSNIMDMYGKTRRLSDAVRLMAKMKQRGCKPNIWIYNSLIDMHGRAMDLRRAEKIWKEM 484
Query: 496 ERRKVTPDKVSYTTVISAYNRAREFDMCVKFYNEFRMNGGVIDRAIAGIMVGVFSKLSQI 555
+R KV PDKVSYT++ISAYNR++E + CV+ Y EFRMN G IDRA+AGIMVGVFSK S+I
Sbjct: 485 KRAKVLPDKVSYTSMISAYNRSKELERCVELYQEFRMNRGKIDRAMAGIMVGVFSKTSRI 544
Query: 556 EELVKLLQDMKSEGTKLDERLYHSAMNALRDAGLQMQAQWLQQNFEG 602
+EL++LLQDMK EGT+LD RLY SA+NALRDAGL Q +WLQ++F+
Sbjct: 545 DELMRLLQDMKVEGTRLDARLYSSALNALRDAGLNSQIRWLQESFDA 591
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LFF1|PP281_ARATH Pentatricopeptide repeat-containing protein At3g53700, chloroplastic OS=Arabidopsis thaliana GN=MEE40 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 142 bits (358), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 130/601 (21%), Positives = 254/601 (42%), Gaps = 58/601 (9%)
Query: 32 FSTC-KAFPFVTVNPSSIINHRFFQVNASTNFPTIELNRDSHHQTAVPDAKKFDSFLHGM 90
FS+C K +PF +++ + + H F +N + TI + D K DS
Sbjct: 3 FSSCLKFYPF-SISQAVTLTHHSFSLNLTPPSSTISFASPHSAALSSTDVKLLDS----- 56
Query: 91 LKDPQTQELAYDYYNEAKKLPEFRPEKSTLKLLIRYLVQSKKWDSIVSLSEDFKI----- 145
L+ A +N A K P F PE + + ++ L +S +D + + ED K
Sbjct: 57 LRSQPDDSAALRLFNLASKKPNFSPEPALYEEILLRLGRSGSFDDMKKILEDMKSSRCEM 116
Query: 146 -------------------------------YNVLPDAHTCSRLVASCVRARKFK---IA 171
+ + PD H +R++ V K I+
Sbjct: 117 GTSTFLILIESYAQFELQDEILSVVDWMIDEFGLKPDTHFYNRMLNLLVDGNSLKLVEIS 176
Query: 172 NTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAY 231
+ + V+ +++ FN + + H IL+ E M S G+V D + +M+ Y
Sbjct: 177 HAKMSVWGIKPDVS--TFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTVMQGY 234
Query: 232 YKIGDSEKVAALFLECKSRKLD-STPFSTHMYKILCDSLGKSGRAFEALKFFRDM-KEKG 289
+ GD + L + + ++ +S ++ K GR +AL F ++M + G
Sbjct: 235 IEEGDLDGA----LRIREQMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDG 290
Query: 290 ILEDPSIYASLICSFASITEVKLAEELFKEAEEKGMLRDPEVCL--KLVLMYIEEGLVEK 347
D + +L+ VK A E+ ++G DP+V ++ + G V++
Sbjct: 291 FFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGY--DPDVYTYNSVISGLCKLGEVKE 348
Query: 348 TLDVVESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIIN 407
++V++ M + +++ K A ++ L S+G +P T+ S+I
Sbjct: 349 AVEVLDQMITRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQ 408
Query: 408 AYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEP 467
C + A ++F EM+ KG + Y+ ++ G++ +A+ ++ +M+ GC
Sbjct: 409 GLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCAR 468
Query: 468 NVWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNRAREFDMCVKFY 527
+V YN+L+D +A R+ E+++ EME V+ + V+Y T+I ++R + +
Sbjct: 469 SVITYNTLIDGFCKANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLM 528
Query: 528 NEFRMNGGVIDRAIAGIMVGVFSKLSQIEELVKLLQDMKSEGTKLDERLYHSAMNALRDA 587
++ M G D+ ++ F + I++ ++Q M S G + D Y + ++ L A
Sbjct: 529 DQMIMEGQKPDKYTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKA 588
Query: 588 G 588
G
Sbjct: 589 G 589
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May be involved in female gametophyte development. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8S8P6|PP180_ARATH Pentatricopeptide repeat-containing protein At2g32630 OS=Arabidopsis thaliana GN=At2g32630 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 138 bits (347), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 103/430 (23%), Positives = 196/430 (45%), Gaps = 39/430 (9%)
Query: 119 TLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVF 178
+L +++ L + + + L ++F + + P+A+T + ++ + V+ R F +L+V
Sbjct: 226 SLTIVVEGLCRRGEVEKSKKLIKEFSVKGIKPEAYTYNTIINAYVKQRDFSGVEGVLKV- 284
Query: 179 ITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSE 238
MK G+V + Y +ME K G
Sbjct: 285 ---------------------------------MKKDGVVYNKVTYTLLMELSVKNGKMS 311
Query: 239 KVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEKGILEDPSIYA 298
LF E + R ++S H+Y L + G A F ++ EKG+ Y
Sbjct: 312 DAEKLFDEMRERGIES---DVHVYTSLISWNCRKGNMKRAFLLFDELTEKGLSPSSYTYG 368
Query: 299 SLICSFASITEVKLAEELFKEAEEKGMLRDPEVCLKLVLMYIEEGLVEKTLDVVESMKNA 358
+LI + E+ AE L E + KG+ V L+ Y +G+V++ + + M+
Sbjct: 369 ALIDGVCKVGEMGAAEILMNEMQSKGVNITQVVFNTLIDGYCRKGMVDEASMIYDVMEQK 428
Query: 359 KLKISDCISC-AIVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIALYSK 417
+ +D +C I + F++ + Y A + +++ G V+Y ++I+ YC+ +
Sbjct: 429 GFQ-ADVFTCNTIASCFNRLKRYDEAKQWLFRMMEGGVKLSTVSYTNLIDVYCKEGNVEE 487
Query: 418 AEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMD 477
A+++F+EM KG + Y+ M+ Y K G+I++A L A M+A G +P+ + Y SL+
Sbjct: 488 AKRLFVEMSSKGVQPNAITYNVMIYAYCKQGKIKEARKLRANMEANGMDPDSYTYTSLIH 547
Query: 478 MHGRAKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNRAREFDMCVKFYNEFRMNGGVI 537
A N+ + +L+ EM + + + V+YT +IS ++A + D Y+E + G I
Sbjct: 548 GECIADNVDEAMRLFSEMGLKGLDQNSVTYTVMISGLSKAGKSDEAFGLYDEMKRKGYTI 607
Query: 538 DRAIAGIMVG 547
D + ++G
Sbjct: 608 DNKVYTALIG 617
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LYZ9|PP362_ARATH Pentatricopeptide repeat-containing protein At5g02860 OS=Arabidopsis thaliana GN=At5g02860 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 137 bits (346), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 111/519 (21%), Positives = 221/519 (42%), Gaps = 68/519 (13%)
Query: 133 WDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIA-------------------NT 173
W+ I SL E K + PDA+T + L+ C R + A N
Sbjct: 260 WNKITSLVEKMKSDGIAPDAYTYNTLITCCKRGSLHQEAAQVFEEMKAAGFSYDKVTYNA 319
Query: 174 LLQVF----------------ITDG-EIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAG 216
LL V+ + +G +++ +NS + Y + M + + +M G
Sbjct: 320 LLDVYGKSHRPKEAMKVLNEMVLNGFSPSIVTYNSLISAYARDGMLDEAMELKNQMAEKG 379
Query: 217 IVLDSGCYCQIMEAYYKIGDSEKVAALFLE-----CKSRKLDSTPFS---------THMY 262
D Y ++ + + G E ++F E CK F T M
Sbjct: 380 TKPDVFTYTTLLSGFERAGKVESAMSIFEEMRNAGCKPNICTFNAFIKMYGNRGKFTEMM 439
Query: 263 KI------------------LCDSLGKSGRAFEALKFFRDMKEKGILEDPSIYASLICSF 304
KI L G++G E F++MK G + + + +LI ++
Sbjct: 440 KIFDEINVCGLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERETFNTLISAY 499
Query: 305 ASITEVKLAEELFKEAEEKGMLRDPEVCLKLVLMYIEEGLVEKTLDVVESMKNAKLKISD 364
+ + A +++ + G+ D ++ G+ E++ V+ M++ + K ++
Sbjct: 500 SRCGSFEQAMTVYRRMLDAGVTPDLSTYNTVLAALARGGMWEQSEKVLAEMEDGRCKPNE 559
Query: 365 CISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIALYSKAEKVFIE 424
C++++ ++ + + E++ S P V +++ + L +AE+ F E
Sbjct: 560 LTYCSLLHAYANGKEIGLMHSLAEEVYSGVIEPRAVLLKTLVLVCSKCDLLPEAERAFSE 619
Query: 425 MQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKN 484
++++GF + +SMV++YG+ + A ++ MK +G P++ YNSLM MH R+ +
Sbjct: 620 LKERGFSPDITTLNSMVSIYGRRQMVAKANGVLDYMKERGFTPSMATYNSLMYMHSRSAD 679
Query: 485 LRQVEKLWKEMERRKVTPDKVSYTTVISAYNRAREFDMCVKFYNEFRMNGGVIDRAIAGI 544
+ E++ +E+ + + PD +SY TVI AY R + ++E R +G V D
Sbjct: 680 FGKSEEILREILAKGIKPDIISYNTVIYAYCRNTRMRDASRIFSEMRNSGIVPDVITYNT 739
Query: 545 MVGVFSKLSQIEELVKLLQDMKSEGTKLDERLYHSAMNA 583
+G ++ S EE + +++ M G + ++ Y+S ++
Sbjct: 740 FIGSYAADSMFEEAIGVVRYMIKHGCRPNQNTYNSIVDG 778
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LW84|PP236_ARATH Pentatricopeptide repeat-containing protein At3g16010 OS=Arabidopsis thaliana GN=At3g16010 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 137 bits (344), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 102/406 (25%), Positives = 187/406 (46%), Gaps = 18/406 (4%)
Query: 187 LAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLE 246
+ +++ + Y KL S I ++++MK + Y ++ Y+K+G EK LF E
Sbjct: 234 ITYSALISSYEKLGRNDSAIRLFDEMKDNCMQPTEKIYTTLLGIYFKVGKVEKALDLFEE 293
Query: 247 CKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEKGILEDPSIYASLICSFAS 306
K T ++ Y L LGK+GR EA F++DM G+ D +L+
Sbjct: 294 MKRAGCSPTVYT---YTELIKGLGKAGRVDEAYGFYKDMLRDGLTPDVVFLNNLMNILGK 350
Query: 307 ITEVKLAEELFKEAEEKGMLRDPEVCLKLVLMY--IEEGLVEKTLDVVE------SMKNA 358
+ V EEL E GM R C V+ Y + + L E V E MK
Sbjct: 351 VGRV---EELTNVFSEMGMWR----CTPTVVSYNTVIKALFESKAHVSEVSSWFDKMKAD 403
Query: 359 KLKISDCISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIALYSKA 418
+ S+ +++G+ K A+ + E++ +G P Y S+INA + Y A
Sbjct: 404 SVSPSEFTYSILIDGYCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINALGKAKRYEAA 463
Query: 419 EKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDM 478
++F E+++ + Y+ M+ +GK G++ +A+ L +MK +G P+V+ YN+LM
Sbjct: 464 NELFKELKENFGNVSSRVYAVMIKHFGKCGKLSEAVDLFNEMKNQGSGPDVYAYNALMSG 523
Query: 479 HGRAKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNRAREFDMCVKFYNEFRMNGGVID 538
+A + + L ++ME D S+ +++ + R ++ + + +G D
Sbjct: 524 MVKAGMINEANSLLRKMEENGCRADINSHNIILNGFARTGVPRRAIEMFETIKHSGIKPD 583
Query: 539 RAIAGIMVGVFSKLSQIEELVKLLQDMKSEGTKLDERLYHSAMNAL 584
++G F+ EE +++++MK +G + D Y S ++A+
Sbjct: 584 GVTYNTLLGCFAHAGMFEEAARMMREMKDKGFEYDAITYSSILDAV 629
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9M907|PP217_ARATH Pentatricopeptide repeat-containing protein At3g06920 OS=Arabidopsis thaliana GN=At3g06920 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 135 bits (341), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 127/564 (22%), Positives = 244/564 (43%), Gaps = 70/564 (12%)
Query: 98 ELAYDYYNEAKKLPEFRPEKSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSR 157
++A+ +++E + +P++ T +I L ++ + D V + E + +P + +
Sbjct: 255 DMAWKFFHEIEA-NGLKPDEVTYTSMIGVLCKANRLDEAVEMFEHLEKNRRVPCTYAYNT 313
Query: 158 LVASCVRARKFKIANTLLQVFITDGEI-ALLAFNSAMGGYNKLHMYYSTILVYEKMK--- 213
++ A KF A +LL+ G I +++A+N + K+ + V+E+MK
Sbjct: 314 MIMGYGSAGKFDEAYSLLERQRAKGSIPSVIAYNCILTCLRKMGKVDEALKVFEEMKKDA 373
Query: 214 -----SAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLE-----------CKSRKLDST-- 255
+ I++D C ++ +++ DS + A LF CKS+KLD
Sbjct: 374 APNLSTYNILIDMLCRAGKLDTAFELRDSMQKAGLFPNVRTVNIMVDRLCKSQKLDEACA 433
Query: 256 PFSTHMYKI----------LCDSLGKSGRAFEALKFFRDMKEKGILEDPSIYASLICSFA 305
F YK+ L D LGK GR +A K + M + + +Y SLI +F
Sbjct: 434 MFEEMDYKVCTPDEITFCSLIDGLGKVGRVDDAYKVYEKMLDSDCRTNSIVYTSLIKNFF 493
Query: 306 SITEVKLAEELFKEAEEKGMLRDPEVCLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDC 365
+ + +++K+ + D ++ + + G EK + E +K A+ + D
Sbjct: 494 NHGRKEDGHKIYKDMINQNCSPDLQLLNTYMDCMFKAGEPEKGRAMFEEIK-ARRFVPDA 552
Query: 366 ISCAI-VNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIALYSKAEKVFIE 424
S +I ++G K +++ + QGC+ Y +I+ +C+ +KA ++ E
Sbjct: 553 RSYSILIHGLIKAGFANETYELFYSMKEQGCVLDTRAYNIVIDGFCKCGKVNKAYQLLEE 612
Query: 425 MQQKGFDKCVVA-----------------------------------YSSMVAMYGKTGR 449
M+ KGF+ VV YSS++ +GK GR
Sbjct: 613 MKTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKRIELNVVIYSSLIDGFGKVGR 672
Query: 450 IRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDKVSYTT 509
I +A ++ ++ KG PN++ +NSL+D +A+ + + ++ M+ K TP++V+Y
Sbjct: 673 IDEAYLILEELMQKGLTPNLYTWNSLLDALVKAEEINEALVCFQSMKELKCTPNQVTYGI 732
Query: 510 VISAYNRAREFDMCVKFYNEFRMNGGVIDRAIAGIMVGVFSKLSQIEELVKLLQDMKSEG 569
+I+ + R+F+ F+ E + G M+ +K I E L K+ G
Sbjct: 733 LINGLCKVRKFNKAFVFWQEMQKQGMKPSTISYTTMISGLAKAGNIAEAGALFDRFKANG 792
Query: 570 TKLDERLYHSAMNALRDAGLQMQA 593
D Y++ + L + M A
Sbjct: 793 GVPDSACYNAMIEGLSNGNRAMDA 816
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q6NQ83|PP247_ARATH Pentatricopeptide repeat-containing protein At3g22470, mitochondrial OS=Arabidopsis thaliana GN=At3g22470 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 127 bits (319), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 121/543 (22%), Positives = 235/543 (43%), Gaps = 24/543 (4%)
Query: 59 STNFPT-IELNRDSHHQTAVPDAKKFDSFLHGMLKDPQTQELAYDYYNEAKKLPEFRPEK 117
S PT I+ NR +AV K++D L G K + + +D Y + + +K
Sbjct: 64 SRPLPTPIDFNR---LCSAVARTKQYDLVL-GFCKGMELNGIEHDMYTMTIMINCYCRKK 119
Query: 118 STLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVAS-CVRARKFKIANTLLQ 176
KLL + V + W PD T S LV C+ R + + +
Sbjct: 120 ---KLLFAFSVLGRAWK-----------LGYEPDTITFSTLVNGFCLEGRVSEAVALVDR 165
Query: 177 VFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGD 236
+ L+ ++ + G +++ ++M G D Y ++ K G+
Sbjct: 166 MVEMKQRPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGN 225
Query: 237 SEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEKGILEDPSI 296
S LF + + R + + S Y I+ DSL K G +AL F +M+ KGI D
Sbjct: 226 SALALDLFRKMEERNIKA---SVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVT 282
Query: 297 YASLICSFASITEVKLAEELFKEAEEKGMLRDPEVCLKLVLMYIEEGLVEKTLDVVESMK 356
Y+SLI + + ++ +E + ++ D L+ ++++EG + + ++ M
Sbjct: 283 YSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMI 342
Query: 357 NAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIALYS 416
+ ++++GF K A ++++ ++S+GC P VTY+ +IN+YC+
Sbjct: 343 TRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVD 402
Query: 417 KAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLM 476
++F E+ KG + Y+++V + ++G++ A L +M ++G P+V Y L+
Sbjct: 403 DGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILL 462
Query: 477 DMHGRAKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNRAREFDMCVKFYNEFRMNGGV 536
D L + +++++M++ ++T Y +I A + D + G
Sbjct: 463 DGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVK 522
Query: 537 IDRAIAGIMVGVFSKLSQIEELVKLLQDMKSEGTKLDERLYHSAMNA-LRDAGLQMQAQW 595
D +M+G K + E L + MK +G D+ Y+ + A L +GL +
Sbjct: 523 PDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDGCTPDDFTYNILIRAHLGGSGLISSVEL 582
Query: 596 LQQ 598
+++
Sbjct: 583 IEE 585
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|O82178|PP186_ARATH Pentatricopeptide repeat-containing protein At2g35130 OS=Arabidopsis thaliana GN=At2g35130 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 127 bits (318), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 85/333 (25%), Positives = 163/333 (48%), Gaps = 6/333 (1%)
Query: 262 YKILCDSLGKSGRAFEALKFFRDMKEKGILEDPSIYASLICSFASITEVKLAEELFKEAE 321
+ +L D+ G+ + EA + + E + YA LI ++ ++ AE + E +
Sbjct: 158 FNLLIDAYGQKFQYKEAESLYVQLLESRYVPTEDTYALLIKAYCMAGLIERAEVVLVEMQ 217
Query: 322 EKGMLRDPEVCLKLVLMYIE-----EGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSK 376
+ + + + YIE +G E+ +DV + MK + K + ++N + K
Sbjct: 218 NH-HVSPKTIGVTVYNAYIEGLMKRKGNTEEAIDVFQRMKRDRCKPTTETYNLMINLYGK 276
Query: 377 RRGYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVA 436
+ + K+Y ++ S C P TY +++NA+ R L KAE++F ++Q+ G + V
Sbjct: 277 ASKSYMSWKLYCEMRSHQCKPNICTYTALVNAFAREGLCEKAEEIFEQLQEDGLEPDVYV 336
Query: 437 YSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEME 496
Y++++ Y + G A + + M+ GCEP+ YN ++D +GRA E +++EM+
Sbjct: 337 YNALMESYSRAGYPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHSDAEAVFEEMK 396
Query: 497 RRKVTPDKVSYTTVISAYNRAREFDMCVKFYNEFRMNGGVIDRAIAGIMVGVFSKLSQIE 556
R + P S+ ++SAY++AR+ C E NG D + M+ ++ +L Q
Sbjct: 397 RLGIAPTMKSHMLLLSAYSKARDVTKCEAIVKEMSENGVEPDTFVLNSMLNLYGRLGQFT 456
Query: 557 ELVKLLQDMKSEGTKLDERLYHSAMNALRDAGL 589
++ K+L +M++ D Y+ +N AG
Sbjct: 457 KMEKILAEMENGPCTADISTYNILINIYGKAGF 489
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FIT7|PP442_ARATH Pentatricopeptide repeat-containing protein At5g61990, mitochondrial OS=Arabidopsis thaliana GN=At5g61990 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 126 bits (316), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 101/481 (20%), Positives = 203/481 (42%), Gaps = 33/481 (6%)
Query: 115 PEKSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTL 174
P K T +LI L + K+ + SL + V D HT S L+ ++ R A L
Sbjct: 275 PLKYTYDVLIDGLCKIKRLEDAKSLLVEMDSLGVSLDNHTYSLLIDGLLKGRNADAAKGL 334
Query: 175 LQVFITDG-EIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYK 233
+ ++ G I ++ + +K + +++ M ++G++ + Y ++E Y +
Sbjct: 335 VHEMVSHGINIKPYMYDCCICVMSKEGVMEKAKALFDGMIASGLIPQAQAYASLIEGYCR 394
Query: 234 IGDSEKVAALFLECKSRKLDSTPFS--------------------------------THM 261
+ + L +E K R + +P++ +
Sbjct: 395 EKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGDLDGAYNIVKEMIASGCRPNVVI 454
Query: 262 YKILCDSLGKSGRAFEALKFFRDMKEKGILEDPSIYASLICSFASITEVKLAEELFKEAE 321
Y L + ++ R +A++ ++MKE+GI D Y SLI + + A E
Sbjct: 455 YTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEARSFLVEMV 514
Query: 322 EKGMLRDPEVCLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRRGYW 381
E G+ + + YIE V+ M+ + + + ++N + K+
Sbjct: 515 ENGLKPNAFTYGAFISGYIEASEFASADKYVKEMRECGVLPNKVLCTGLINEYCKKGKVI 574
Query: 382 AAVKVYEQLISQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMV 441
A Y ++ QG + TY ++N + AE++F EM+ KG V +Y ++
Sbjct: 575 EACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLI 634
Query: 442 AMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVT 501
+ K G ++ A + +M +G PNV IYN L+ R+ + + ++L EM + +
Sbjct: 635 NGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLH 694
Query: 502 PDKVSYTTVISAYNRAREFDMCVKFYNEFRMNGGVIDRAIAGIMVGVFSKLSQIEELVKL 561
P+ V+Y T+I Y ++ + + ++E ++ G V D + +V +L+ +E + +
Sbjct: 695 PNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDGCCRLNDVERAITI 754
Query: 562 L 562
Sbjct: 755 F 755
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SXD1|PPR91_ARATH Pentatricopeptide repeat-containing protein At1g62670, mitochondrial OS=Arabidopsis thaliana GN=At1g62670 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 125 bits (315), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 101/451 (22%), Positives = 202/451 (44%), Gaps = 5/451 (1%)
Query: 150 PDAHTCSRLVASCVRARKFKIANTLL-QVFITDGEIALLAFNSAMGGYNKLHMYYSTILV 208
P+ T S L+ +++ A L+ Q+F+T + + FN+ + G + + +
Sbjct: 149 PNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAMAL 208
Query: 209 YEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDS 268
++M + G D Y ++ K GD++ L + + KL+ +Y + D
Sbjct: 209 IDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEP---GVLIYNTIIDG 265
Query: 269 LGKSGRAFEALKFFRDMKEKGILEDPSIYASLICSFASITEVKLAEELFKEAEEKGMLRD 328
L K +AL F++M+ KGI + Y+SLI + A L + E+ + D
Sbjct: 266 LCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPD 325
Query: 329 PEVCLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYE 388
L+ +++EG + + + + M + S +++NGF A +++E
Sbjct: 326 VFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFE 385
Query: 389 QLISQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTG 448
++S+ C P VTY ++I +C+ + +VF EM Q+G V Y+ ++ + G
Sbjct: 386 FMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAG 445
Query: 449 RIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDKVSYT 508
A + +M + G PN+ YN+L+D + L + +++ ++R K+ P +Y
Sbjct: 446 DCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYN 505
Query: 509 TVISAYNRAREFDMCVKFYNEFRMNGGVIDRAIAGIMVGVFSKLSQIEELVKLLQDMKSE 568
+I +A + + + + G D M+ F + EE L ++MK +
Sbjct: 506 IMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKED 565
Query: 569 GTKLDERLYHSAMNA-LRDAGLQMQAQWLQQ 598
GT + Y++ + A LRD + A+ +++
Sbjct: 566 GTLPNSGCYNTLIRARLRDGDREASAELIKE 596
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 603 | ||||||
| 225425981 | 603 | PREDICTED: pentatricopeptide repeat-cont | 0.976 | 0.976 | 0.622 | 0.0 | |
| 359484961 | 609 | PREDICTED: pentatricopeptide repeat-cont | 0.976 | 0.967 | 0.620 | 0.0 | |
| 224108157 | 525 | predicted protein [Populus trichocarpa] | 0.867 | 0.996 | 0.700 | 0.0 | |
| 297738294 | 552 | unnamed protein product [Vitis vinifera] | 0.844 | 0.922 | 0.646 | 0.0 | |
| 449530158 | 608 | PREDICTED: pentatricopeptide repeat-cont | 0.978 | 0.970 | 0.584 | 0.0 | |
| 449466949 | 608 | PREDICTED: pentatricopeptide repeat-cont | 0.978 | 0.970 | 0.584 | 0.0 | |
| 297736068 | 568 | unnamed protein product [Vitis vinifera] | 0.840 | 0.892 | 0.641 | 0.0 | |
| 356521196 | 601 | PREDICTED: pentatricopeptide repeat-cont | 0.963 | 0.966 | 0.579 | 0.0 | |
| 356575210 | 609 | PREDICTED: pentatricopeptide repeat-cont | 0.925 | 0.916 | 0.606 | 0.0 | |
| 297807403 | 609 | pentatricopeptide repeat-containing prot | 0.864 | 0.855 | 0.573 | 1e-174 |
| >gi|225425981|ref|XP_002269531.1| PREDICTED: pentatricopeptide repeat-containing protein At5g13770, chloroplastic-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 790 bits (2041), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 383/615 (62%), Positives = 485/615 (78%), Gaps = 26/615 (4%)
Query: 3 MAISSSSDCSSALINTTYTCMKKSYRHTLFSTCKAFPFVTVNPSSIINHRFFQVNAST-- 60
MA+S+S I+T+ + T STCK P ++ P S N R+ VN S+
Sbjct: 1 MAVSTS-------ISTSNCRQPHKLKLTFTSTCKLLPIFSL-PCS--NSRYLFVNNSSYS 50
Query: 61 ------------NFPTIELNRDSHHQTAVPDAKKFDSFLHGMLKDPQTQELAYDYYNEAK 108
+ P IEL D P + + FL G+ +DP+++ELA+DYY + K
Sbjct: 51 SPIVAEESTHDHHLPVIEL--DVELPDLTPKDENLNDFLCGLFRDPRSEELAFDYYQKVK 108
Query: 109 KLPEFRPEKSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKF 168
+ PEFRP+K TL+ +IRYL++SKKW + + EDFK ++ D C RL++SC+RARKF
Sbjct: 109 ERPEFRPDKETLERIIRYLIRSKKWGLSLLVFEDFKSFDAQLDGDICCRLISSCIRARKF 168
Query: 169 KIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIM 228
+I +LL+VF + ++ALL FNSAMGGYNKLHM+ STI VY++MKSAG+V +S Y +IM
Sbjct: 169 RITESLLEVFSYNDDVALLVFNSAMGGYNKLHMFSSTIAVYDRMKSAGVVPNSESYYRIM 228
Query: 229 EAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEK 288
EAY KI D EKV LF E +SRK+DS+PFST +Y+ILC+SLGK GRAFEAL+FFRDM +K
Sbjct: 229 EAYIKIRDYEKVVTLFQEFESRKIDSSPFSTQIYRILCESLGKMGRAFEALEFFRDMTKK 288
Query: 289 GILEDPSIYASLICSFASITEVKLAEELFKEAEEKGMLRDPEVCLKLVLMYIEEGLVEKT 348
GILED ++Y+SLICSFASI EVK+AEELF+EAEEK +LRDPEV LKLVLMY+EEGL+E+T
Sbjct: 289 GILEDSAVYSSLICSFASIREVKVAEELFREAEEKKILRDPEVFLKLVLMYVEEGLMERT 348
Query: 349 LDVVESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINA 408
L++V++MKN ++++SDCI CAIVNGF+K+RG AA KVY++LI QGC PGQVTYASIIN
Sbjct: 349 LEIVKAMKNVEIRVSDCIFCAIVNGFAKKRGLRAAAKVYDELILQGCEPGQVTYASIINV 408
Query: 409 YCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPN 468
YCR+ LYSKAE VF EM++KGF+KCVVAYSSMV MYGKTGR+R+AM LVAKMK +GCEPN
Sbjct: 409 YCRMELYSKAEMVFSEMEKKGFNKCVVAYSSMVVMYGKTGRLREAMRLVAKMKERGCEPN 468
Query: 469 VWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNRAREFDMCVKFYN 528
VW+YNSLMDMHGR KNLRQVEKLWKEM+R+KV PD+VSYT+VISAY++A +F+ C++FY+
Sbjct: 469 VWVYNSLMDMHGRVKNLRQVEKLWKEMKRKKVVPDRVSYTSVISAYSKAGDFETCMRFYH 528
Query: 529 EFRMNGGVIDRAIAGIMVGVFSKLSQIEELVKLLQDMKSEGTKLDERLYHSAMNALRDAG 588
EFRMNGGVIDR IAGIMVG+FSK +++ELVKLLQDMK+EGT LDERLY SA+NALRDAG
Sbjct: 529 EFRMNGGVIDRVIAGIMVGIFSKSGRVDELVKLLQDMKTEGTGLDERLYRSALNALRDAG 588
Query: 589 LQMQAQWLQQNFEGT 603
LQMQA+WLQ++F+ T
Sbjct: 589 LQMQARWLQESFDTT 603
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359484961|ref|XP_002273494.2| PREDICTED: pentatricopeptide repeat-containing protein At5g13770, chloroplastic-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 785 bits (2028), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 380/612 (62%), Positives = 484/612 (79%), Gaps = 23/612 (3%)
Query: 3 MAISSSSDCSSALINTTYTCMKKSYRHTLFSTCKAFPFVTVNPSSIINHRFFQVNASTNF 62
MA+S+S I+T+ + T STCK P ++ P S N R+ VN S+
Sbjct: 1 MAVSTS-------ISTSNCRQPHRLKLTFTSTCKLLPIFSL-PCS--NSRYLFVNNSSYS 50
Query: 63 PTI---ELNRDSHHQTAV----------PDAKKFDSFLHGMLKDPQTQELAYDYYNEAKK 109
I E D HH + P + + FL G+ +DP+++ELA+DYY + K+
Sbjct: 51 SPIVAEESTHDHHHLPVIELDVELPDLTPKDENLNDFLCGLFRDPRSEELAFDYYQKVKE 110
Query: 110 LPEFRPEKSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFK 169
PEFRP+K TL+ +IRYL++SKKW + + EDFK ++V D C RL++SC+RARKF+
Sbjct: 111 RPEFRPDKETLERIIRYLIRSKKWGLSLLVFEDFKSFDVQLDGDICCRLISSCIRARKFR 170
Query: 170 IANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIME 229
I +LL+VF + ++ALL NSAMGGYNKLHM+ STI VY++MKSAG+V +S Y +IME
Sbjct: 171 ITESLLEVFSYNDDVALLVCNSAMGGYNKLHMFSSTIAVYDRMKSAGVVPNSESYYRIME 230
Query: 230 AYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEKG 289
AY KI D EKV LF E +SRK+DS+PFST +Y+ILC+SLGK GRAFEAL+FFRDM +KG
Sbjct: 231 AYIKIRDYEKVVTLFQEFESRKIDSSPFSTQIYRILCESLGKMGRAFEALEFFRDMTKKG 290
Query: 290 ILEDPSIYASLICSFASITEVKLAEELFKEAEEKGMLRDPEVCLKLVLMYIEEGLVEKTL 349
ILED ++Y+SLICSFASI EVK+AEELF+EAEEK +LRDPEV LKLVLMY+EEGL+E+T+
Sbjct: 291 ILEDSAVYSSLICSFASIREVKVAEELFREAEEKKILRDPEVFLKLVLMYVEEGLMERTI 350
Query: 350 DVVESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINAY 409
++V++MKN K+++SDCI CAIVNGF+K+RG AA KVY++LI QGC PGQVTYASIIN Y
Sbjct: 351 EIVKAMKNVKIRVSDCIFCAIVNGFAKKRGLRAAAKVYDELILQGCEPGQVTYASIINVY 410
Query: 410 CRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNV 469
CR+ LYSKAE +F EM++KGF+KCVVAYSSMV MYGKTGR+R+AM LVAKMK +GC+PNV
Sbjct: 411 CRMELYSKAEMMFSEMEKKGFNKCVVAYSSMVVMYGKTGRLREAMRLVAKMKERGCKPNV 470
Query: 470 WIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNRAREFDMCVKFYNE 529
W+YNSLMDMHGR KNLRQVEKLWKEM+R+KV PD+VSYT+VISAY++A +F+ C++FY+E
Sbjct: 471 WVYNSLMDMHGRVKNLRQVEKLWKEMKRKKVVPDRVSYTSVISAYSKAGDFETCMRFYHE 530
Query: 530 FRMNGGVIDRAIAGIMVGVFSKLSQIEELVKLLQDMKSEGTKLDERLYHSAMNALRDAGL 589
FRMNGGVIDR IAGIMVG+FSK +++ELVKLLQDMK+EGT LDERLY SA+NALRDAGL
Sbjct: 531 FRMNGGVIDRVIAGIMVGIFSKSGRVDELVKLLQDMKTEGTGLDERLYRSALNALRDAGL 590
Query: 590 QMQAQWLQQNFE 601
QMQA+WLQ++F+
Sbjct: 591 QMQARWLQESFD 602
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224108157|ref|XP_002314741.1| predicted protein [Populus trichocarpa] gi|222863781|gb|EEF00912.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 770 bits (1988), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 369/527 (70%), Positives = 453/527 (85%), Gaps = 4/527 (0%)
Query: 78 PDAKKFDSFLHGMLKDPQTQELAYDYYNEAKKLPEFRPEKSTLKLLIRYLVQSKKWDSIV 137
PD K + FL G+L+DP+++ELAY+YY +AK+ PEFRP++ LKLLIRYL+QS KW ++
Sbjct: 1 PD--KLNDFLCGVLQDPKSEELAYEYYKKAKEKPEFRPQRPVLKLLIRYLIQSDKWGLVL 58
Query: 138 SLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYN 197
SL++DFK YNV PD+ T S LV+SC+RAR+FKI LL+ F +D +IA+LAF+SAM GYN
Sbjct: 59 SLADDFKKYNVFPDSFTFSTLVSSCIRARRFKIVENLLENFKSDSKIAVLAFDSAMKGYN 118
Query: 198 KLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPF 257
KLHMY STI V+EKM AGI LDS CYCQIM+AYYK+GD+EKV ALF E +SRKLDS P
Sbjct: 119 KLHMYGSTISVHEKMILAGIPLDSRCYCQIMKAYYKLGDAEKVVALFNEFESRKLDSKPM 178
Query: 258 S-THMYKILCDSLGKSGRAFEALKFFRDMKEKGILEDPSIYASLICSFASITEVKLAEEL 316
++KILC SLG+SG+AF+AL++ RDM++KGILED SIY+SLICSFA+I EV++AEEL
Sbjct: 179 ILRQIFKILCLSLGRSGQAFQALEYSRDMRKKGILEDSSIYSSLICSFANIREVEVAEEL 238
Query: 317 FKEAEEKGMLRDPEVCLKLVLMYIEEGLVEKTLDVVESMKN-AKLKISDCISCAIVNGFS 375
FKEA EK MLRDPE+ L+LVLMYIEEG +EKT+++V+ MK A LK+SDCI CAIVNGFS
Sbjct: 239 FKEALEKRMLRDPEIVLRLVLMYIEEGQMEKTIEIVKVMKGTANLKVSDCIFCAIVNGFS 298
Query: 376 KRRGYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQKGFDKCVV 435
KRRG+ AAVKVYE+L GC PGQVTYAS+INAYCR LYSKAE VF EM++KGFDKCVV
Sbjct: 299 KRRGFSAAVKVYEELKYDGCDPGQVTYASVINAYCRAGLYSKAEMVFSEMEEKGFDKCVV 358
Query: 436 AYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEM 495
AYSSM++MYGKTGR RDA LVAKMK KGCEPNVWIYNSL+DMHGRAKNLRQVEKLWKEM
Sbjct: 359 AYSSMISMYGKTGRARDATRLVAKMKLKGCEPNVWIYNSLLDMHGRAKNLRQVEKLWKEM 418
Query: 496 ERRKVTPDKVSYTTVISAYNRAREFDMCVKFYNEFRMNGGVIDRAIAGIMVGVFSKLSQI 555
+RRKV PDKV+Y++VISAYN+++E++MCV++Y+E+R+NGGVID A+AGIM GVFSK+S+I
Sbjct: 419 KRRKVAPDKVTYSSVISAYNKSKEYEMCVRYYHEYRINGGVIDGAMAGIMAGVFSKISRI 478
Query: 556 EELVKLLQDMKSEGTKLDERLYHSAMNALRDAGLQMQAQWLQQNFEG 602
+ELVKLL+DMKSEGT +DERLY SA NA+RDAGL +QA+WLQ +F+
Sbjct: 479 DELVKLLRDMKSEGTPIDERLYRSATNAMRDAGLDIQAKWLQDSFKA 525
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297738294|emb|CBI27495.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 740 bits (1911), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 351/543 (64%), Positives = 438/543 (80%), Gaps = 34/543 (6%)
Query: 61 NFPTIELNRDSHHQTAVPDAKKFDSFLHGMLKDPQTQELAYDYYNEAKKLPEFRPEKSTL 120
+ P IEL D P + + FL G+ +DP+++ELA+DYY + K+ PEFRP+K TL
Sbjct: 33 HLPVIEL--DVELPDLTPKDENLNDFLCGLFRDPRSEELAFDYYQKVKERPEFRPDKETL 90
Query: 121 KLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFIT 180
+ +IR L++SC+RARKF+I +LL+VF
Sbjct: 91 ERIIR--------------------------------LISSCIRARKFRITESLLEVFSY 118
Query: 181 DGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKV 240
+ ++ALL FNSAMGGYNKLHM+ STI VY++MKSAG+V +S Y +IMEAY KI D EKV
Sbjct: 119 NDDVALLVFNSAMGGYNKLHMFSSTIAVYDRMKSAGVVPNSESYYRIMEAYIKIRDYEKV 178
Query: 241 AALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEKGILEDPSIYASL 300
LF E +SRK+DS+PFST +Y+ILC+SLGK GRAFEAL+FFRDM +KGILED ++Y+SL
Sbjct: 179 VTLFQEFESRKIDSSPFSTQIYRILCESLGKMGRAFEALEFFRDMTKKGILEDSAVYSSL 238
Query: 301 ICSFASITEVKLAEELFKEAEEKGMLRDPEVCLKLVLMYIEEGLVEKTLDVVESMKNAKL 360
ICSFASI EVK+AEELF+EAEEK +LRDPEV LKLVLMY+EEGL+E+TL++V++MKN ++
Sbjct: 239 ICSFASIREVKVAEELFREAEEKKILRDPEVFLKLVLMYVEEGLMERTLEIVKAMKNVEI 298
Query: 361 KISDCISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIALYSKAEK 420
++SDCI CAIVNGF+K+RG AA KVY++LI QGC PGQVTYASIIN YCR+ LYSKAE
Sbjct: 299 RVSDCIFCAIVNGFAKKRGLRAAAKVYDELILQGCEPGQVTYASIINVYCRMELYSKAEM 358
Query: 421 VFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHG 480
VF EM++KGF+KCVVAYSSMV MYGKTGR+R+AM LVAKMK +GCEPNVW+YNSLMDMHG
Sbjct: 359 VFSEMEKKGFNKCVVAYSSMVVMYGKTGRLREAMRLVAKMKERGCEPNVWVYNSLMDMHG 418
Query: 481 RAKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNRAREFDMCVKFYNEFRMNGGVIDRA 540
R KNLRQVEKLWKEM+R+KV PD+VSYT+VISAY++A +F+ C++FY+EFRMNGGVIDR
Sbjct: 419 RVKNLRQVEKLWKEMKRKKVVPDRVSYTSVISAYSKAGDFETCMRFYHEFRMNGGVIDRV 478
Query: 541 IAGIMVGVFSKLSQIEELVKLLQDMKSEGTKLDERLYHSAMNALRDAGLQMQAQWLQQNF 600
IAGIMVG+FSK +++ELVKLLQDMK+EGT LDERLY SA+NALRDAGLQMQA+WLQ++F
Sbjct: 479 IAGIMVGIFSKSGRVDELVKLLQDMKTEGTGLDERLYRSALNALRDAGLQMQARWLQESF 538
Query: 601 EGT 603
+ T
Sbjct: 539 DTT 541
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449530158|ref|XP_004172063.1| PREDICTED: pentatricopeptide repeat-containing protein At5g13770, chloroplastic-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 740 bits (1911), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/613 (58%), Positives = 468/613 (76%), Gaps = 23/613 (3%)
Query: 3 MAISSSSDCSSALINTTYTCMKKSYRHTLFSTCKAFPFVTVNPSSIINHRFFQVNAS--- 59
MA+S S DCS N S+R + F + F + P+S N +N+S
Sbjct: 1 MALSPSPDCSFPPSN--------SFRKSHFISTSNFSLLFSLPTS--NLPSLHLNSSGCP 50
Query: 60 --------TNFPTIELNRDSH--HQTAVPDAKKFDSFLHGMLKDPQTQELAYDYYNEAKK 109
P I N + H ++P+ + + FL G+ ++P T++L YDYY +AK+
Sbjct: 51 SPILEQPSIALPDIHSNSNLHDFQLPSLPNVQDLNDFLCGLSQNPGTEDLIYDYYVKAKE 110
Query: 110 LPEFRPEKSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFK 169
FRP+KSTL+ LIRYLV+ KKWD I+ +S DF + V PD TCS+LV+SCVR RKFK
Sbjct: 111 TAGFRPQKSTLRHLIRYLVRLKKWDLILLVSRDFVDFGVCPDRDTCSKLVSSCVRGRKFK 170
Query: 170 IANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIME 229
+ +LL+VF + +A+ AF +AM GYNKLHM+ STI+V++++KSA I DSGCYC++ME
Sbjct: 171 VVKSLLEVFERNSGVAMTAFEAAMRGYNKLHMHKSTIMVFQRLKSARIEADSGCYCRVME 230
Query: 230 AYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEKG 289
AY K+GDSE+V LF E +SR DSTPFST +Y ILC+SL KSGR FE+L+FFRDM++KG
Sbjct: 231 AYLKLGDSERVMELFNEVESRISDSTPFSTKIYGILCESLAKSGRVFESLEFFRDMRKKG 290
Query: 290 ILEDPSIYASLICSFASITEVKLAEELFKEAEEKGMLRDPEVCLKLVLMYIEEGLVEKTL 349
I ED +IY++LIC+FASI EVKLAE+L+ EA+ K +LRDP + LKL+LMY+++G +EK L
Sbjct: 291 IAEDYTIYSALICTFASIQEVKLAEDLYNEAKAKKLLRDPAMFLKLILMYVQQGSLEKAL 350
Query: 350 DVVESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINAY 409
++VE MK+ K+ +SDCI CAIVNG++ RRGY AAVKVYE+LI GC PGQVTYAS INAY
Sbjct: 351 EIVEVMKDFKIGVSDCIFCAIVNGYATRRGYEAAVKVYEKLIEDGCEPGQVTYASAINAY 410
Query: 410 CRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNV 469
CR+ LYSKAE +F EM++KGFDKCVVAYSS+++MYGKTGR++DAM L+AKMK KGC+PNV
Sbjct: 411 CRVGLYSKAEDIFGEMEEKGFDKCVVAYSSLISMYGKTGRLKDAMRLLAKMKEKGCQPNV 470
Query: 470 WIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNRAREFDMCVKFYNE 529
WIYN LM+MHG+AKNL+QVEKLWKEM+R+K+ PDKVSYT++ISAY +A EF+ C ++Y E
Sbjct: 471 WIYNILMEMHGKAKNLKQVEKLWKEMKRKKIAPDKVSYTSIISAYVKASEFEKCEQYYRE 530
Query: 530 FRMNGGVIDRAIAGIMVGVFSKLSQIEELVKLLQDMKSEGTKLDERLYHSAMNALRDAGL 589
FRMNGG ID+A GIMVGVFSK S+++ELVKLL+DMK EGT+LDERLY +A+NAL DAGL
Sbjct: 531 FRMNGGTIDKAFGGIMVGVFSKTSRVDELVKLLRDMKLEGTRLDERLYRTALNALMDAGL 590
Query: 590 QMQAQWLQQNFEG 602
Q+QA+WLQ ++ G
Sbjct: 591 QVQAKWLQDHYAG 603
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449466949|ref|XP_004151188.1| PREDICTED: pentatricopeptide repeat-containing protein At5g13770, chloroplastic-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 738 bits (1906), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/613 (58%), Positives = 467/613 (76%), Gaps = 23/613 (3%)
Query: 3 MAISSSSDCSSALINTTYTCMKKSYRHTLFSTCKAFPFVTVNPSSIINHRFFQVNAS--- 59
MA+S S DCS N S+R + F + F + P+S N +N+S
Sbjct: 1 MALSPSPDCSFPPSN--------SFRKSHFISTSNFSLLFSLPTS--NLPSLHLNSSGCP 50
Query: 60 --------TNFPTIELNRDSH--HQTAVPDAKKFDSFLHGMLKDPQTQELAYDYYNEAKK 109
P I N + H ++P+ + + FL G+ ++P T++L YDYY +AK+
Sbjct: 51 SPILEQPSIALPDIHSNSNLHDFQLPSLPNVQDLNDFLCGLSQNPGTEDLIYDYYVKAKE 110
Query: 110 LPEFRPEKSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFK 169
FRP+KSTL+ LIRYLV+ KKWD I+ +S DF + V PD TCS+LV+SCVR RKFK
Sbjct: 111 TAGFRPQKSTLRHLIRYLVRLKKWDLILLVSRDFVDFGVCPDRDTCSKLVSSCVRGRKFK 170
Query: 170 IANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIME 229
+ +LL+VF D +A+ AF +AM GYNKLHM+ STI+V++++KSA I DSGCYC++ME
Sbjct: 171 VVKSLLEVFERDSGVAMTAFEAAMRGYNKLHMHKSTIMVFQRLKSARIEADSGCYCRVME 230
Query: 230 AYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEKG 289
AY K+GDSE+V LF E +SR STPFST +Y ILC+SL KSGR FE+L+FFRDM++KG
Sbjct: 231 AYLKLGDSERVMELFNEVESRISVSTPFSTKIYGILCESLAKSGRVFESLEFFRDMRKKG 290
Query: 290 ILEDPSIYASLICSFASITEVKLAEELFKEAEEKGMLRDPEVCLKLVLMYIEEGLVEKTL 349
I ED +IY++LIC+FASI EVKLAE+L+ EA+ K +LRDP + LKL+LMY+++G +EK L
Sbjct: 291 IAEDYTIYSALICTFASIQEVKLAEDLYNEAKAKKLLRDPAMFLKLILMYVQQGSLEKAL 350
Query: 350 DVVESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINAY 409
++VE MK+ K+ +SDCI CAIVNG++ RRGY AAVKVYE+LI GC PGQVTYAS INAY
Sbjct: 351 EIVEVMKDFKIGVSDCIFCAIVNGYATRRGYEAAVKVYEKLIEDGCEPGQVTYASAINAY 410
Query: 410 CRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNV 469
CR+ LYSKAE +F EM++KGFDKCVVAYSS+++MYGKTGR++DAM L+AKMK KGC+PNV
Sbjct: 411 CRVGLYSKAEDIFGEMEEKGFDKCVVAYSSLISMYGKTGRLKDAMRLLAKMKEKGCQPNV 470
Query: 470 WIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNRAREFDMCVKFYNE 529
WIYN LM+MHG+AKNL+QVEKLWKEM+R+K+ PDKVSYT++ISAY +A EF+ C ++Y E
Sbjct: 471 WIYNILMEMHGKAKNLKQVEKLWKEMKRKKIAPDKVSYTSIISAYVKASEFEKCEQYYRE 530
Query: 530 FRMNGGVIDRAIAGIMVGVFSKLSQIEELVKLLQDMKSEGTKLDERLYHSAMNALRDAGL 589
FRMNGG ID+A GIMVGVFSK S+++ELVKLL+DMK EGT+LDERLY +A+NAL DAGL
Sbjct: 531 FRMNGGTIDKAFGGIMVGVFSKTSRVDELVKLLRDMKLEGTRLDERLYRTALNALMDAGL 590
Query: 590 QMQAQWLQQNFEG 602
Q+QA+WLQ ++ G
Sbjct: 591 QVQAKWLQDHYAG 603
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297736068|emb|CBI24106.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 732 bits (1890), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 347/541 (64%), Positives = 436/541 (80%), Gaps = 34/541 (6%)
Query: 61 NFPTIELNRDSHHQTAVPDAKKFDSFLHGMLKDPQTQELAYDYYNEAKKLPEFRPEKSTL 120
+ P IEL D P + + FL G+ +DP+++ELA+DYY + K+ PEFRP+K TL
Sbjct: 19 HLPVIEL--DVELPDLTPKDENLNDFLCGLFRDPRSEELAFDYYQKVKERPEFRPDKETL 76
Query: 121 KLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFIT 180
+ +IR L++SC+RARKF+I +LL+VF
Sbjct: 77 ERIIR--------------------------------LISSCIRARKFRITESLLEVFSY 104
Query: 181 DGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKV 240
+ ++ALL NSAMGGYNKLHM+ STI VY++MKSAG+V +S Y +IMEAY KI D EKV
Sbjct: 105 NDDVALLVCNSAMGGYNKLHMFSSTIAVYDRMKSAGVVPNSESYYRIMEAYIKIRDYEKV 164
Query: 241 AALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEKGILEDPSIYASL 300
LF E +SRK+DS+PFST +Y+ILC+SLGK GRAFEAL+FFRDM +KGILED ++Y+SL
Sbjct: 165 VTLFQEFESRKIDSSPFSTQIYRILCESLGKMGRAFEALEFFRDMTKKGILEDSAVYSSL 224
Query: 301 ICSFASITEVKLAEELFKEAEEKGMLRDPEVCLKLVLMYIEEGLVEKTLDVVESMKNAKL 360
ICSFASI EVK+AEELF+EAEEK +LRDPEV LKLVLMY+EEGL+E+T+++V++MKN K+
Sbjct: 225 ICSFASIREVKVAEELFREAEEKKILRDPEVFLKLVLMYVEEGLMERTIEIVKAMKNVKI 284
Query: 361 KISDCISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIALYSKAEK 420
++SDCI CAIVNGF+K+RG AA KVY++LI QGC PGQVTYASIIN YCR+ LYSKAE
Sbjct: 285 RVSDCIFCAIVNGFAKKRGLRAAAKVYDELILQGCEPGQVTYASIINVYCRMELYSKAEM 344
Query: 421 VFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHG 480
+F EM++KGF+KCVVAYSSMV MYGKTGR+R+AM LVAKMK +GC+PNVW+YNSLMDMHG
Sbjct: 345 MFSEMEKKGFNKCVVAYSSMVVMYGKTGRLREAMRLVAKMKERGCKPNVWVYNSLMDMHG 404
Query: 481 RAKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNRAREFDMCVKFYNEFRMNGGVIDRA 540
R KNLRQVEKLWKEM+R+KV PD+VSYT+VISAY++A +F+ C++FY+EFRMNGGVIDR
Sbjct: 405 RVKNLRQVEKLWKEMKRKKVVPDRVSYTSVISAYSKAGDFETCMRFYHEFRMNGGVIDRV 464
Query: 541 IAGIMVGVFSKLSQIEELVKLLQDMKSEGTKLDERLYHSAMNALRDAGLQMQAQWLQQNF 600
IAGIMVG+FSK +++ELVKLLQDMK+EGT LDERLY SA+NALRDAGLQMQA+WLQ++F
Sbjct: 465 IAGIMVGIFSKSGRVDELVKLLQDMKTEGTGLDERLYRSALNALRDAGLQMQARWLQESF 524
Query: 601 E 601
+
Sbjct: 525 D 525
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356521196|ref|XP_003529243.1| PREDICTED: pentatricopeptide repeat-containing protein At5g13770, chloroplastic-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 719 bits (1855), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 349/602 (57%), Positives = 459/602 (76%), Gaps = 21/602 (3%)
Query: 16 INTTYTCMKKSYRHTLFSTCKAFP-FVTVNPSSIINHRFF-------------QVNASTN 61
+NT + + H FP TV+PS + RFF + S+N
Sbjct: 1 MNTQFCRTPPHHVHAPIIPTSHFPSLYTVSPS---HPRFFFHANFSASPTPILEEEPSSN 57
Query: 62 FPTI---ELNRDSHHQTAVPDAKKFDSFLHGMLKDPQTQELAYDYYNEAKKLPEFRPEKS 118
P I ++N D Q + P+ + + FL G+ +DP+T+ELA+DYY K+ PEFRPEK
Sbjct: 58 TPIIHVVDVNFDVQQQYSKPEPENLNEFLCGLFEDPKTKELAFDYYQRLKERPEFRPEKP 117
Query: 119 TLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVF 178
TLK +IRYLV K WDSI+S+S+DFK+Y+VLPD TCSRLV C+ RKF++A LL VF
Sbjct: 118 TLKHVIRYLVSLKSWDSILSVSDDFKVYHVLPDRATCSRLVKFCIEHRKFRVAEALLDVF 177
Query: 179 ITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSE 238
+D ++A +AF+SAM YNKLHM+ +T+LV+E+++S+ +VLDS Y IMEAY K+ + E
Sbjct: 178 KSDSKVAFMAFSSAMRSYNKLHMFRNTVLVFERIRSSNVVLDSRGYLHIMEAYSKLNECE 237
Query: 239 KVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEKGILEDPSIYA 298
KV LF E +SRKL +Y+ILC+SL + GRA EAL +FR+M +KGI E SIY+
Sbjct: 238 KVVQLFREFESRKLRGPTCLAQIYEILCESLARCGRASEALDYFREMTKKGISEY-SIYS 296
Query: 299 SLICSFASITEVKLAEELFKEAEEKGMLRDPEVCLKLVLMYIEEGLVEKTLDVVESMKNA 358
LI SFAS+ EV +AEEL +EA+ K ++DPEV LKLV MYIEEGL+EKTL+VV+ M++A
Sbjct: 297 KLIYSFASLGEVDVAEELVREAKGKTTIKDPEVYLKLVHMYIEEGLLEKTLEVVKEMEDA 356
Query: 359 KLKISDCISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIALYSKA 418
+K+SDCI C +VNGFSK+RG+ AAVKV+E+LIS+G PGQVTYAS+INAY R+ YSKA
Sbjct: 357 DVKVSDCILCTVVNGFSKKRGFSAAVKVFEELISKGNEPGQVTYASVINAYWRLGQYSKA 416
Query: 419 EKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDM 478
E+VF+EM+QKGFDKCV AYS+M+ MYG+TGR+R AM LVAKMK +GC+PNVWIYNSL+DM
Sbjct: 417 EEVFLEMEQKGFDKCVYAYSTMIVMYGRTGRVRSAMKLVAKMKERGCKPNVWIYNSLIDM 476
Query: 479 HGRAKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNRAREFDMCVKFYNEFRMNGGVID 538
HGR KNL+Q+EKLWKEM+RR+V PDKVSYT++I AY++A EF+ CVK +NE+RMNGG+ID
Sbjct: 477 HGRDKNLKQLEKLWKEMKRRRVAPDKVSYTSIIGAYSKAGEFETCVKLFNEYRMNGGLID 536
Query: 539 RAIAGIMVGVFSKLSQIEELVKLLQDMKSEGTKLDERLYHSAMNALRDAGLQMQAQWLQQ 598
RA+AGIMVGVFSK+ Q++ELVKLLQDMK+EGT+LD+RLY SA NA +DAGLQ+QA+W+++
Sbjct: 537 RALAGIMVGVFSKVGQVDELVKLLQDMKTEGTRLDQRLYQSAWNAFKDAGLQLQARWMKE 596
Query: 599 NF 600
+F
Sbjct: 597 SF 598
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356575210|ref|XP_003555735.1| PREDICTED: pentatricopeptide repeat-containing protein At5g13770, chloroplastic-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 715 bits (1845), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 340/561 (60%), Positives = 444/561 (79%), Gaps = 3/561 (0%)
Query: 42 TVNPSSIINHRFFQVNASTNFPTIELN--RDSHHQTAVPDAKKFDSFLHGMLKDPQTQEL 99
+ +P+ I+ N T +++N D Q + P+ + + FL G+ +DP+T+EL
Sbjct: 47 SASPTPILEEEPSSSNTPTIIHVVDVNFAADVQKQYSKPEPENLNEFLCGLFEDPKTKEL 106
Query: 100 AYDYYNEAKKLPEFRPEKSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLV 159
A+DYY K+ PEFRPEK TLK +IRYLV K W SI+S+SEDFK+Y+VLPD TCSRLV
Sbjct: 107 AFDYYQRLKERPEFRPEKPTLKHVIRYLVSLKSWGSILSVSEDFKVYHVLPDRATCSRLV 166
Query: 160 ASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVL 219
C+ RKF++A +LL VF D ++A LAF+SAM YNKLHM+ +T+LV+E+MKS+ +VL
Sbjct: 167 KFCIEHRKFRVAESLLYVFKDDSKVAFLAFSSAMRSYNKLHMFRNTVLVFERMKSSNVVL 226
Query: 220 DSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEAL 279
DS Y IMEAY K+ + EKV LF E +SRKL + + +Y ILC+SL + GRAFEAL
Sbjct: 227 DSRGYLHIMEAYSKLNECEKVVQLFREFESRKLRGSSYLAQIYVILCESLARHGRAFEAL 286
Query: 280 KFFRDMKEKGILEDPSIYASLICSFASITEVKLAEELFKEAEEKGMLRDPEVCLKLVLMY 339
FF +M +KGI E SIY+ LI SFAS+ EV +AEEL +EA+ K ++DPEV LKLV MY
Sbjct: 287 DFFTEMAKKGISEY-SIYSKLIYSFASLREVVVAEELLREAKGKMTIKDPEVYLKLVHMY 345
Query: 340 IEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQ 399
IEEGL+EKTL+VV+ M++A +K+SDCI C +VNGFSK+RG+ AAVKV+E+LIS+G GQ
Sbjct: 346 IEEGLLEKTLEVVKEMEDADVKVSDCILCTVVNGFSKKRGFLAAVKVFEELISKGYESGQ 405
Query: 400 VTYASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAK 459
VTYAS+INAY R+ YSKAE+VF+EM+QKGFDKCV AYS+M+ MYG+TGR+R AM LVAK
Sbjct: 406 VTYASVINAYWRLGQYSKAEEVFLEMEQKGFDKCVYAYSTMIVMYGRTGRVRSAMKLVAK 465
Query: 460 MKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNRARE 519
MK +GC+PNVWIYNSL+DMHGR KNL+Q+EKLWKEM+RR+V PDKVSYT++I AY++A E
Sbjct: 466 MKERGCKPNVWIYNSLIDMHGRDKNLKQLEKLWKEMKRRRVAPDKVSYTSIIGAYSKAGE 525
Query: 520 FDMCVKFYNEFRMNGGVIDRAIAGIMVGVFSKLSQIEELVKLLQDMKSEGTKLDERLYHS 579
F+ CVKF+NE+RMNGG+IDRA+AGIMVGVFSK+ ++ELVKLLQDMK+EGT+LD+RLY S
Sbjct: 526 FETCVKFFNEYRMNGGLIDRAMAGIMVGVFSKVGLVDELVKLLQDMKAEGTRLDQRLYQS 585
Query: 580 AMNALRDAGLQMQAQWLQQNF 600
A NA +DAGLQ+QA+W++++F
Sbjct: 586 AWNAFKDAGLQIQARWMKESF 606
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297807403|ref|XP_002871585.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297317422|gb|EFH47844.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 617 bits (1591), Expect = e-174, Method: Compositional matrix adjust.
Identities = 302/527 (57%), Positives = 396/527 (75%), Gaps = 6/527 (1%)
Query: 78 PDAKKFDSFLHGMLKDPQTQELAYDYYNEAKKLPEFRPEKSTLKLLIRYLVQSKKWDSIV 137
P + L L+DP+T++L+ ++Y +AK+ E R T K LI YLV SK W+ +V
Sbjct: 69 PGPDDLNRVLSRFLRDPETRKLSSEFYEKAKENSELR----TTKHLINYLVSSKNWNLLV 124
Query: 138 SLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYN 197
SL ED + + LPDA TCS L+ SC+R RKF+I + LL VF +D +A+ A ++AM G+N
Sbjct: 125 SLCEDLREHKALPDAQTCSNLIRSCIRERKFRITHCLLSVFRSDKSLAVSASDAAMKGFN 184
Query: 198 KLHMYYSTILVYEKMK-SAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLD-ST 255
KL MY STI V++++K S G+ GCYC+IMEA+ KIGD++KV LF E KS++L
Sbjct: 185 KLQMYSSTIQVFDRLKQSVGVEPSPGCYCRIMEAHEKIGDNQKVVELFQEVKSQRLSFLA 244
Query: 256 PFSTHMYKILCDSLGKSGRAFEALKFFRDMKEKGILEDPSIYASLICSFASITEVKLAEE 315
S +Y I+C SL KSGRAFEAL+ +MK+KGI E +Y+ LI +FA EV + E+
Sbjct: 245 KESGSIYTIVCSSLAKSGRAFEALEVLEEMKDKGIPESSELYSMLIRAFAEAREVVITEK 304
Query: 316 LFKEAEEKGMLRDPEVCLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFS 375
LFKEA K +L+DPE+CLK+VLMY+ EG +E+TL+VV +M A+LK++DCI CAIVNGF
Sbjct: 305 LFKEAGGKKLLKDPEMCLKVVLMYVREGKMERTLEVVAAMIKAELKVTDCILCAIVNGFC 364
Query: 376 KRRGYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQKGFDKCVV 435
K+RG+ A+KVYE + Q C GQVTYA INAYCR+ KAE +F EM +KGFDKCVV
Sbjct: 365 KQRGFAEAIKVYEWAMKQECEAGQVTYAIAINAYCRLEQDDKAEMLFDEMVKKGFDKCVV 424
Query: 436 AYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEM 495
AYS+++ MYGKT R+ DA+ L+AKMK +GC+PN+WIYNSL+DMHGRAK+LR+ EK+WKEM
Sbjct: 425 AYSNIMDMYGKTQRLSDAVKLMAKMKQRGCKPNIWIYNSLIDMHGRAKDLRRAEKIWKEM 484
Query: 496 ERRKVTPDKVSYTTVISAYNRAREFDMCVKFYNEFRMNGGVIDRAIAGIMVGVFSKLSQI 555
+R KV PDKVSYT++ISAYNRA+E + CV+ Y EFRMN G IDRA+AGIMVGVFSK S+I
Sbjct: 485 KRAKVLPDKVSYTSMISAYNRAKELERCVELYQEFRMNRGKIDRAMAGIMVGVFSKTSRI 544
Query: 556 EELVKLLQDMKSEGTKLDERLYHSAMNALRDAGLQMQAQWLQQNFEG 602
+EL++LLQDMK EGT+LD RLY SA+NALRDAGL Q +WLQ++F+
Sbjct: 545 DELMRLLQDMKVEGTRLDARLYSSALNALRDAGLNSQIRWLQESFDA 591
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 603 | ||||||
| TAIR|locus:2177115 | 609 | AT5G13770 "AT5G13770" [Arabido | 0.862 | 0.853 | 0.553 | 4.5e-153 | |
| TAIR|locus:2083976 | 754 | MEE40 "maternal effect embryo | 0.766 | 0.612 | 0.220 | 1.2e-31 | |
| TAIR|locus:2060226 | 624 | AT2G32630 "AT2G32630" [Arabido | 0.693 | 0.669 | 0.243 | 6.7e-28 | |
| TAIR|locus:2093472 | 642 | AT3G16010 [Arabidopsis thalian | 0.757 | 0.711 | 0.222 | 9.8e-28 | |
| TAIR|locus:2151281 | 819 | AT5G02860 [Arabidopsis thalian | 0.829 | 0.610 | 0.207 | 1.1e-27 | |
| TAIR|locus:2077061 | 619 | AT3G22470 "AT3G22470" [Arabido | 0.786 | 0.765 | 0.222 | 4.4e-26 | |
| TAIR|locus:2026192 | 630 | RPF2 "rna processing factor 2" | 0.734 | 0.703 | 0.231 | 1.7e-25 | |
| TAIR|locus:2157607 | 709 | AT5G42310 [Arabidopsis thalian | 0.713 | 0.606 | 0.230 | 8.7e-24 | |
| TAIR|locus:2024296 | 598 | AT1G09900 "AT1G09900" [Arabido | 0.756 | 0.762 | 0.217 | 9.1e-24 | |
| TAIR|locus:2077637 | 871 | AT3G06920 "AT3G06920" [Arabido | 0.815 | 0.564 | 0.200 | 1.3e-23 |
| TAIR|locus:2177115 AT5G13770 "AT5G13770" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1493 (530.6 bits), Expect = 4.5e-153, P = 4.5e-153
Identities = 291/526 (55%), Positives = 385/526 (73%)
Query: 78 PDAKKFDSFLHGMLKDPQTQELAYDYYNEAKKLPEFRPEKSTLKLLIRYLVQSKKWDSIV 137
P + L L+DP+T++L+ ++Y +AK+ E R T K LI YLV SK WD +V
Sbjct: 69 PGPNDLNRVLSRFLRDPETRKLSSEFYEKAKENSELR----TTKHLISYLVSSKSWDLLV 124
Query: 138 SLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYN 197
S+ ED + + LPD TCS L+ SC+R RKF+I + LL VF +D +A+ A ++AM G+N
Sbjct: 125 SVCEDLREHKALPDGQTCSNLIRSCIRDRKFRITHCLLSVFRSDKSLAVSASDAAMKGFN 184
Query: 198 KLHMYYSTILVYEKMK-SAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDS-T 255
KL MY STI V++++K S G+ GCYC+IMEA+ KIG++ KV LF E KS++L
Sbjct: 185 KLQMYSSTIQVFDRLKQSVGVEPSPGCYCRIMEAHEKIGENHKVVELFQEFKSQRLSFLA 244
Query: 256 PFSTHMYKILCDSLGKSGRAFEALKFFRDMKEKGILEDPSIYASLICSFASITXXXXXXX 315
S +Y I+C SL KSGRAFEAL+ +MK+KGI E +Y+ LI +FA
Sbjct: 245 KESGSIYTIVCSSLAKSGRAFEALEVLEEMKDKGIPESSELYSMLIRAFAEAREVVITEK 304
Query: 316 XXXXXXXXGMLRDPEVCLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFS 375
+L+DPE+CLK+VLMY+ EG +E TL+VV +M+ A+LK++DCI CAIVNGFS
Sbjct: 305 LFKEAGGKKLLKDPEMCLKVVLMYVREGNMETTLEVVAAMRKAELKVTDCILCAIVNGFS 364
Query: 376 KRRGYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQKGFDKCVV 435
K+RG+ AVKVYE + + C GQVTYA INAYCR+ Y+KAE +F EM +KGFDKCVV
Sbjct: 365 KQRGFAEAVKVYEWAMKEECEAGQVTYAIAINAYCRLEKYNKAEMLFDEMVKKGFDKCVV 424
Query: 436 AYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEM 495
AYS+++ MYGKT R+ DA+ L+AKMK +GC+PN+WIYNSL+DMHGRA +LR+ EK+WKEM
Sbjct: 425 AYSNIMDMYGKTRRLSDAVRLMAKMKQRGCKPNIWIYNSLIDMHGRAMDLRRAEKIWKEM 484
Query: 496 ERRKVTPDKVSYTTVISAYNRAREFDMCVKFYNEFRMNGGVIDRAIAGIMVGVFSKLSQI 555
+R KV PDKVSYT++ISAYNR++E + CV+ Y EFRMN G IDRA+AGIMVGVFSK S+I
Sbjct: 485 KRAKVLPDKVSYTSMISAYNRSKELERCVELYQEFRMNRGKIDRAMAGIMVGVFSKTSRI 544
Query: 556 EELVKLLQDMKSEGTKLDERLYHSAMNALRDAGLQMQAQWLQQNFE 601
+EL++LLQDMK EGT+LD RLY SA+NALRDAGL Q +WLQ++F+
Sbjct: 545 DELMRLLQDMKVEGTRLDARLYSSALNALRDAGLNSQIRWLQESFD 590
|
|
| TAIR|locus:2083976 MEE40 "maternal effect embryo arrest 40" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 321 (118.1 bits), Expect = 1.2e-31, Sum P(2) = 1.2e-31
Identities = 106/480 (22%), Positives = 212/480 (44%)
Query: 118 STLKLLIRYLVQSKKWDSIVSLSEDFKI--YNVLPDAHTCSRLVASCVRARKFK---IAN 172
ST +LI Q + D I+S+ D+ I + + PD H +R++ V K I++
Sbjct: 119 STFLILIESYAQFELQDEILSVV-DWMIDEFGLKPDTHFYNRMLNLLVDGNSLKLVEISH 177
Query: 173 TLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYY 232
+ V+ +++ FN + + H IL+ E M S G+V D + +M+ Y
Sbjct: 178 AKMSVWGIKPDVS--TFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTVMQGYI 235
Query: 233 KIGDSEKVAALFLECKSRKLD-STPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEK-GI 290
+ GD + L + + ++ +S ++ K GR +AL F ++M + G
Sbjct: 236 EEGDLDGA----LRIREQMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGF 291
Query: 291 LEDPSIYASLICSFASITXXXXXXXXXXXXXXXGMLRDPEVCL--KLVLMYIEEGLVEKT 348
D + +L+ G DP+V ++ + G V++
Sbjct: 292 FPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGY--DPDVYTYNSVISGLCKLGEVKEA 349
Query: 349 LDVVESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINA 408
++V++ M + +++ K A ++ L S+G +P T+ S+I
Sbjct: 350 VEVLDQMITRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQG 409
Query: 409 YCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPN 468
C + A ++F EM+ KG + Y+ ++ G++ +A+ ++ +M+ GC +
Sbjct: 410 LCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARS 469
Query: 469 VWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNRAREFDMCVKFYN 528
V YN+L+D +A R+ E+++ EME V+ + V+Y T+I ++R + + +
Sbjct: 470 VITYNTLIDGFCKANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMD 529
Query: 529 EFRMNGGVIDRAIAGIMVGVFSKLSQIEELVKLLQDMKSEGTKLDERLYHSAMNALRDAG 588
+ M G D+ ++ F + I++ ++Q M S G + D Y + ++ L AG
Sbjct: 530 QMIMEGQKPDKYTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAG 589
|
|
| TAIR|locus:2060226 AT2G32630 "AT2G32630" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 338 (124.0 bits), Expect = 6.7e-28, P = 6.7e-28
Identities = 105/431 (24%), Positives = 194/431 (45%)
Query: 124 IRYLVQSKKWDSIVSLSEDFKIY---NVLPDAHTCSRLVASCVRARKFKIANTLLQVFIT 180
I +LV +KK I E F+ V ++ + +V R + + + L++ F
Sbjct: 193 IVFLVAAKKRRRIDLCLEIFRRMVDSGVKITVYSLTIVVEGLCRRGEVEKSKKLIKEFSV 252
Query: 181 DG-EIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEK 239
G + +N+ + Y K + V + MK G+V + Y +ME K G
Sbjct: 253 KGIKPEAYTYNTIINAYVKQRDFSGVEGVLKVMKKDGVVYNKVTYTLLMELSVKNGKMSD 312
Query: 240 VAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEKGILEDPSIYAS 299
LF E + R ++S H+Y L + G A F ++ EKG+ Y +
Sbjct: 313 AEKLFDEMRERGIES---DVHVYTSLISWNCRKGNMKRAFLLFDELTEKGLSPSSYTYGA 369
Query: 300 LICSFASITXXXXXXXXXXXXXXXGMLRDPEVCLKLVLMYIEEGLVEKTLDVVESMKNAK 359
LI + G+ V L+ Y +G+V++ + + M+
Sbjct: 370 LIDGVCKVGEMGAAEILMNEMQSKGVNITQVVFNTLIDGYCRKGMVDEASMIYDVMEQKG 429
Query: 360 LKISDCISC-AIVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIALYSKA 418
+ +D +C I + F++ + Y A + +++ G V+Y ++I+ YC+ +A
Sbjct: 430 FQ-ADVFTCNTIASCFNRLKRYDEAKQWLFRMMEGGVKLSTVSYTNLIDVYCKEGNVEEA 488
Query: 419 EKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDM 478
+++F+EM KG + Y+ M+ Y K G+I++A L A M+A G +P+ + Y SL+
Sbjct: 489 KRLFVEMSSKGVQPNAITYNVMIYAYCKQGKIKEARKLRANMEANGMDPDSYTYTSLI-- 546
Query: 479 HGR--AKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNRAREFDMCVKFYNEFRMNGGV 536
HG A N+ + +L+ EM + + + V+YT +IS ++A + D Y+E + G
Sbjct: 547 HGECIADNVDEAMRLFSEMGLKGLDQNSVTYTVMISGLSKAGKSDEAFGLYDEMKRKGYT 606
Query: 537 IDRAIAGIMVG 547
ID + ++G
Sbjct: 607 IDNKVYTALIG 617
|
|
| TAIR|locus:2093472 AT3G16010 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 337 (123.7 bits), Expect = 9.8e-28, P = 9.8e-28
Identities = 106/477 (22%), Positives = 212/477 (44%)
Query: 118 STLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQV 177
+ L L++ L ++K +S+ K P + T + ++ ++ + + + +
Sbjct: 163 AVLSELVKALGRAKMVSKALSVFYQAKGRKCKPTSSTYNSVILMLMQEGQHEKVHEVYTE 222
Query: 178 FITDGEIA--LLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIG 235
+G+ + +++ + Y KL S I ++++MK + Y ++ Y+K+G
Sbjct: 223 MCNEGDCFPDTITYSALISSYEKLGRNDSAIRLFDEMKDNCMQPTEKIYTTLLGIYFKVG 282
Query: 236 DSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEKGILEDPS 295
EK LF E K + +P + + Y L LGK+GR EA F++DM G+ D
Sbjct: 283 KVEKALDLFEEMK--RAGCSP-TVYTYTELIKGLGKAGRVDEAYGFYKDMLRDGLTPDVV 339
Query: 296 IYASLICSFASITXXXXXXXXXXXXXXXGMLRDPEVCLKLVLMY--IEEGLVEKTLDVVE 353
+L+ + GM R C V+ Y + + L E V E
Sbjct: 340 FLNNLMNILGKV---GRVEELTNVFSEMGMWR----CTPTVVSYNTVIKALFESKAHVSE 392
Query: 354 ------SMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIIN 407
MK + S+ +++G+ K A+ + E++ +G P Y S+IN
Sbjct: 393 VSSWFDKMKADSVSPSEFTYSILIDGYCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLIN 452
Query: 408 AYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEP 467
A + Y A ++F E+++ + Y+ M+ +GK G++ +A+ L +MK +G P
Sbjct: 453 ALGKAKRYEAANELFKELKENFGNVSSRVYAVMIKHFGKCGKLSEAVDLFNEMKNQGSGP 512
Query: 468 NVWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNRAREFDMCVKFY 527
+V+ YN+LM +A + + L ++ME D S+ +++ + R ++ +
Sbjct: 513 DVYAYNALMSGMVKAGMINEANSLLRKMEENGCRADINSHNIILNGFARTGVPRRAIEMF 572
Query: 528 NEFRMNGGVIDRAIAGIMVGVFSKLSQIEELVKLLQDMKSEGTKLDERLYHSAMNAL 584
+ +G D ++G F+ EE +++++MK +G + D Y S ++A+
Sbjct: 573 ETIKHSGIKPDGVTYNTLLGCFAHAGMFEEAARMMREMKDKGFEYDAITYSSILDAV 629
|
|
| TAIR|locus:2151281 AT5G02860 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 339 (124.4 bits), Expect = 1.1e-27, P = 1.1e-27
Identities = 105/506 (20%), Positives = 225/506 (44%)
Query: 78 PDAKKFDSFLHGMLKDPQTQELAYDYYNEAKKLPEFRPEKSTLKLLIRYLVQSKKWDSIV 137
PDA +++ + + QE A + E K F +K T L+ +S + +
Sbjct: 277 PDAYTYNTLITCCKRGSLHQEAAQVF--EEMKAAGFSYDKVTYNALLDVYGKSHRPKEAM 334
Query: 138 SLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDG-EIALLAFNSAMGGY 196
+ + + P T + L+++ R A L G + + + + + G+
Sbjct: 335 KVLNEMVLNGFSPSIVTYNSLISAYARDGMLDEAMELKNQMAEKGTKPDVFTYTTLLSGF 394
Query: 197 NKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTP 256
+ S + ++E+M++AG + + ++ Y G ++ +F E L S
Sbjct: 395 ERAGKVESAMSIFEEMRNAGCKPNICTFNAFIKMYGNRGKFTEMMKIFDEINVCGL-SPD 453
Query: 257 FSTHMYKILCDSLGKSGRAFEALKFFRDMKEKGILEDPSIYASLICSFASITXXXXXXXX 316
T + L G++G E F++MK G + + + +LI +++
Sbjct: 454 IVT--WNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERETFNTLISAYSRCGSFEQAMTV 511
Query: 317 XXXXXXXGMLRDPEVCLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSK 376
G+ D ++ G+ E++ V+ M++ + K ++ C++++ ++
Sbjct: 512 YRRMLDAGVTPDLSTYNTVLAALARGGMWEQSEKVLAEMEDGRCKPNELTYCSLLHAYAN 571
Query: 377 RRGYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVA 436
+ + E++ S P V +++ + L +AE+ F E++++GF +
Sbjct: 572 GKEIGLMHSLAEEVYSGVIEPRAVLLKTLVLVCSKCDLLPEAERAFSELKERGFSPDITT 631
Query: 437 YSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEME 496
+SMV++YG+ + A ++ MK +G P++ YNSLM MH R+ + + E++ +E+
Sbjct: 632 LNSMVSIYGRRQMVAKANGVLDYMKERGFTPSMATYNSLMYMHSRSADFGKSEEILREIL 691
Query: 497 RRKVTPDKVSYTTVISAYNRAREFDMCVKFYNEFRMNGGVIDRAIAGIMVGVFSKLSQIE 556
+ + PD +SY TVI AY R + ++E R +G V D +G ++ S E
Sbjct: 692 AKGIKPDIISYNTVIYAYCRNTRMRDASRIFSEMRNSGIVPDVITYNTFIGSYAADSMFE 751
Query: 557 ELVKLLQDMKSEGTKLDERLYHSAMN 582
E + +++ M G + ++ Y+S ++
Sbjct: 752 EAIGVVRYMIKHGCRPNQNTYNSIVD 777
|
|
| TAIR|locus:2077061 AT3G22470 "AT3G22470" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 322 (118.4 bits), Expect = 4.4e-26, P = 4.4e-26
Identities = 108/485 (22%), Positives = 211/485 (43%)
Query: 119 TLKLLIRYLVQSKKWDSIVS-LSEDFKIYNVLPDAHTCSRLVAS-CVRARKFKIANTLLQ 176
T+ ++I + KK S L +K+ PD T S LV C+ R + + +
Sbjct: 107 TMTIMINCYCRKKKLLFAFSVLGRAWKL-GYEPDTITFSTLVNGFCLEGRVSEAVALVDR 165
Query: 177 VFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGD 236
+ L+ ++ + G +++ ++M G D Y ++ K G+
Sbjct: 166 MVEMKQRPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGN 225
Query: 237 SEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEKGILEDPSI 296
S LF + + R + + S Y I+ DSL K G +AL F +M+ KGI D
Sbjct: 226 SALALDLFRKMEERNIKA---SVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVT 282
Query: 297 YASLICSFASITXXXXXXXXXXXXXXXGMLRDPEVCLKLVLMYIEEGLVEKTLDVVESMK 356
Y+SLI + ++ D L+ ++++EG + + ++ M
Sbjct: 283 YSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMI 342
Query: 357 NAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIALYS 416
+ ++++GF K A ++++ ++S+GC P VTY+ +IN+YC+
Sbjct: 343 TRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVD 402
Query: 417 KAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLM 476
++F E+ KG + Y+++V + ++G++ A L +M ++G P+V Y L+
Sbjct: 403 DGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILL 462
Query: 477 DMHGRAKN--LRQVEKLWKEMERRKVTPDKVSYTTVISAYNRAREFDMCVKFYNEFRMNG 534
D G N L + +++++M++ ++T Y +I A + D + G
Sbjct: 463 D--GLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKG 520
Query: 535 GVIDRAIAGIMVGVFSKLSQIEELVKLLQDMKSEGTKLDERLYHSAMNA-LRDAGLQMQA 593
D +M+G K + E L + MK +G D+ Y+ + A L +GL
Sbjct: 521 VKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDGCTPDDFTYNILIRAHLGGSGLISSV 580
Query: 594 QWLQQ 598
+ +++
Sbjct: 581 ELIEE 585
|
|
| TAIR|locus:2026192 RPF2 "rna processing factor 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 317 (116.6 bits), Expect = 1.7e-25, P = 1.7e-25
Identities = 105/454 (23%), Positives = 202/454 (44%)
Query: 150 PDAHTCSRLVASCVRARKFKIANTLL-QVFITDGEIALLAFNSAMGGYNKLHMYYSTIL- 207
P+ T S L+ +++ A L+ Q+F+T + + FN+ + G LH S +
Sbjct: 149 PNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQPNTVTFNTLIHGLF-LHNKASEAMA 207
Query: 208 VYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCD 267
+ ++M + G D Y ++ K GD++ L + + KL+ P +Y + D
Sbjct: 208 LIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLE--P-GVLIYNTIID 264
Query: 268 SLGKSGRAFEALKFFRDMKEKGILEDPSIYASLICSFASITXXXXXXXXXXXXXXXGMLR 327
L K +AL F++M+ KGI + Y+SLI + +
Sbjct: 265 GLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINP 324
Query: 328 DPEVCLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVY 387
D L+ +++EG + + + + M + S +++NGF A +++
Sbjct: 325 DVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMF 384
Query: 388 EQLISQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKT 447
E ++S+ C P VTY ++I +C+ + +VF EM Q+G V Y+ ++ +
Sbjct: 385 EFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQA 444
Query: 448 GRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKN--LRQVEKLWKEMERRKVTPDKV 505
G A + +M + G PN+ YN+L+D G KN L + +++ ++R K+ P
Sbjct: 445 GDCDMAQEIFKEMVSDGVPPNIMTYNTLLD--GLCKNGKLEKAMVVFEYLQRSKMEPTIY 502
Query: 506 SYTTVISAYNRAREFDMCVKFYNEFRMNGGVIDRAIAGIMVGVFSKLSQIEELVKLLQDM 565
+Y +I +A + + + + G D M+ F + EE L ++M
Sbjct: 503 TYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEM 562
Query: 566 KSEGTKLDERLYHSAMNA-LRDAGLQMQAQWLQQ 598
K +GT + Y++ + A LRD + A+ +++
Sbjct: 563 KEDGTLPNSGCYNTLIRARLRDGDREASAELIKE 596
|
|
| TAIR|locus:2157607 AT5G42310 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 303 (111.7 bits), Expect = 8.7e-24, P = 8.7e-24
Identities = 103/447 (23%), Positives = 203/447 (45%)
Query: 142 DFKIYNVLPDAHTCSRLVASCVRARKFK-IANTLLQVFITDGEIALLAFNSAMGGYNKLH 200
DF Y+++ + T S + S + R +K I L++ ++ L+ N + G+ K
Sbjct: 231 DFVNYSLVIQSLTRSNKIDSVMLLRLYKEIERDKLEL-----DVQLV--NDIIMGFAKSG 283
Query: 201 MYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTH 260
+ + ++ G+ + I+ A G + + ALF E + + P T
Sbjct: 284 DPSKALQLLGMAQATGLSAKTATLVSIISALADSGRTLEAEALFEELRQSGIK--P-RTR 340
Query: 261 MYKILCDSLGKSGRAFEALKFFRDMKEKGILEDPSIYASLICSFASITXXXXXXXXXXXX 320
Y L K+G +A +M+++G+ D Y+ LI ++ +
Sbjct: 341 AYNALLKGYVKTGPLKDAESMVSEMEKRGVSPDEHTYSLLIDAYVNAGRWESARIVLKEM 400
Query: 321 XXXGMLRDPEVCLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRRGY 380
+ + V +L+ + + G +KT V++ MK+ +K +++ F K
Sbjct: 401 EAGDVQPNSFVFSRLLAGFRDRGEWQKTFQVLKEMKSIGVKPDRQFYNVVIDTFGKFNCL 460
Query: 381 WAAVKVYEQLISQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSM 440
A+ +++++S+G P +VT+ ++I+ +C+ + AE++F M+++G C Y+ M
Sbjct: 461 DHAMTTFDRMLSEGIEPDRVTWNTLIDCHCKHGRHIVAEEMFEAMERRGCLPCATTYNIM 520
Query: 441 VAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEMERRKV 500
+ YG R D L+ KMK++G PNV + +L+D++G++ + +EM+ +
Sbjct: 521 INSYGDQERWDDMKRLLGKMKSQGILPNVVTHTTLVDVYGKSGRFNDAIECLEEMKSVGL 580
Query: 501 TPDKVSYTTVISAYNRAREFDMCVKFYNEFRM--NGGVIDRAIA-GIMVGVFSKLSQIEE 557
P Y +I+AY + + V N FR+ + G+ +A ++ F + + E
Sbjct: 581 KPSSTMYNALINAYAQRGLSEQAV---NAFRVMTSDGLKPSLLALNSLINAFGEDRRDAE 637
Query: 558 LVKLLQDMKSEGTKLDERLYHSAMNAL 584
+LQ MK G K D Y + M AL
Sbjct: 638 AFAVLQYMKENGVKPDVVTYTTLMKAL 664
|
|
| TAIR|locus:2024296 AT1G09900 "AT1G09900" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 301 (111.0 bits), Expect = 9.1e-24, P = 9.1e-24
Identities = 104/479 (21%), Positives = 212/479 (44%)
Query: 124 IRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGE 183
+R +V++ + + E+ + +PD C+ L+ R K + A +L++ G
Sbjct: 109 LRQMVRTGELEEGFKFLENMVYHGNVPDIIPCTTLIRGFCRLGKTRKAAKILEILEGSGA 168
Query: 184 IA-LLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAA 242
+ ++ +N + GY K + + V ++M + V+ Y I+ + + DS K+
Sbjct: 169 VPDVITYNVMISGYCKAGEINNALSVLDRMSVSPDVVT---YNTILRS---LCDSGKLKQ 222
Query: 243 LFLECKSRKL--DSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEKGILEDPSIYASL 300
+E R L D P Y IL ++ + A+K +M+++G D Y L
Sbjct: 223 A-MEVLDRMLQRDCYP-DVITYTILIEATCRDSGVGHAMKLLDEMRDRGCTPDVVTYNVL 280
Query: 301 ICSFASITXXXXXXXXXXXXXXXGMLRDPEVCLKLVLMYIEEGLVEKTLDVVESMKNAKL 360
+ G P V +++ + +D + + +
Sbjct: 281 VNGICKEGRLDEAIKFLNDMPSSGC--QPNVITHNIILR-SMCSTGRWMDAEKLLADMLR 337
Query: 361 K--ISDCISCAIVNGFSKRRGYWA-AVKVYEQLISQGCIPGQVTYASIINAYCRIALYSK 417
K ++ I+ F R+G A+ + E++ GC P ++Y +++ +C+ +
Sbjct: 338 KGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDR 397
Query: 418 AEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMD 477
A + M +G +V Y++M+ K G++ DA+ ++ ++ +KGC P + YN+++D
Sbjct: 398 AIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVID 457
Query: 478 MHGRAKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNRAREFDMCVKFYNEF-RMNGGV 536
+A + KL EM + + PD ++Y++++ +R + D +KF++EF RM G+
Sbjct: 458 GLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFERM--GI 515
Query: 537 IDRAIA--GIMVGVFSKLSQIEELVKLLQDMKSEGTKLDERLYHSAMNALRDAGLQMQA 593
A+ IM+G+ K Q + + L M + G K +E Y + L G+ +A
Sbjct: 516 RPNAVTFNSIMLGL-CKSRQTDRAIDFLVFMINRGCKPNETSYTILIEGLAYEGMAKEA 573
|
|
| TAIR|locus:2077637 AT3G06920 "AT3G06920" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 303 (111.7 bits), Expect = 1.3e-23, P = 1.3e-23
Identities = 101/503 (20%), Positives = 211/503 (41%)
Query: 76 AVPDAKKFDSFLHGMLKDPQTQELAYDYYNEAKKLPEFRPEKSTLKLLIRYLVQSKKWDS 135
++P ++ L + K + E A + E KK + P ST +LI L ++ K D+
Sbjct: 339 SIPSVIAYNCILTCLRKMGKVDE-ALKVFEEMKK--DAAPNLSTYNILIDMLCRAGKLDT 395
Query: 136 IVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIAL---LAFNSA 192
L + + + P+ T + +V +++K A + + D ++ + F S
Sbjct: 396 AFELRDSMQKAGLFPNVRTVNIMVDRLCKSQKLDEACAMFEEM--DYKVCTPDEITFCSL 453
Query: 193 MGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKL 252
+ G K+ VYEKM + +S Y +++ ++ G E ++ + ++
Sbjct: 454 IDGLGKVGRVDDAYKVYEKMLDSDCRTNSIVYTSLIKNFFNHGRKEDGHKIYKDMINQ-- 511
Query: 253 DSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEKGILEDPSIYASLICSFASITXXXX 312
+ +P + D + K+G + F ++K + + D Y+ LI
Sbjct: 512 NCSP-DLQLLNTYMDCMFKAGEPEKGRAMFEEIKARRFVPDARSYSILIHGLIKAGFANE 570
Query: 313 XXXXXXXXXXXGMLRDPEVCLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVN 372
G + D ++ + + G V K ++E MK + + ++++
Sbjct: 571 TYELFYSMKEQGCVLDTRAYNIVIDGFCKCGKVNKAYQLLEEMKTKGFEPTVVTYGSVID 630
Query: 373 GFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQKGFDK 432
G +K A ++E+ S+ V Y+S+I+ + ++ +A + E+ QKG
Sbjct: 631 GLAKIDRLDEAYMLFEEAKSKRIELNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTP 690
Query: 433 CVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLW 492
+ ++S++ K I +A+ MK C PN Y L++ + + + W
Sbjct: 691 NLYTWNSLLDALVKAEEINEALVCFQSMKELKCTPNQVTYGILINGLCKVRKFNKAFVFW 750
Query: 493 KEMERRKVTPDKVSYTTVISAYNRAREFDMCVKFYNEFRMNGGVIDRAIAGIMVGVFSKL 552
+EM+++ + P +SYTT+IS +A ++ F+ NGGV D A M+ S
Sbjct: 751 QEMQKQGMKPSTISYTTMISGLAKAGNIAEAGALFDRFKANGGVPDSACYNAMIEGLSNG 810
Query: 553 SQIEELVKLLQDMKSEGTKLDER 575
++ + L ++ + G + +
Sbjct: 811 NRAMDAFSLFEETRRRGLPIHNK 833
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q66GP4 | PP379_ARATH | No assigned EC number | 0.5692 | 0.8640 | 0.8555 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 603 | |||
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 2e-14 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 9e-13 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 4e-11 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 7e-11 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-08 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 3e-08 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 5e-08 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-07 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-06 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 4e-06 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 5e-06 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 6e-06 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-05 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 8e-05 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 9e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 1e-04 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 2e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 2e-04 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 6e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.002 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.002 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.002 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 76.4 bits (188), Expect = 2e-14
Identities = 71/307 (23%), Positives = 141/307 (45%), Gaps = 17/307 (5%)
Query: 208 VYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCD 267
VY ++S+G D +++ + K G LF E R L S + +
Sbjct: 145 VYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLAS-------WGTIIG 197
Query: 268 SLGKSGRAFEALKFFRDMKEKGILEDPSIYASLICSFASITEVKLAEELFKEAEEKGMLR 327
L +G EA FR+M E G +P + ++ + A + + ++L + G++
Sbjct: 198 GLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVG 257
Query: 328 DPEVCLKLVLMYIEEGLVEKTLDVVESMKNAK-LKISDCISCAIVNGFSKRRGYWAAVKV 386
D V L+ MY + G +E V + M + + ++ ++G+S+ A+ +
Sbjct: 258 DTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEE-----ALCL 312
Query: 387 YEQLISQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGK 446
Y ++ G Q T++ +I + R+AL A++ + + GF +VA +++V +Y K
Sbjct: 313 YYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSK 372
Query: 447 TGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDKVS 506
GR+ DA + +M K N+ +N+L+ +G + ++++ M V P+ V+
Sbjct: 373 WGRMEDARNVFDRMPRK----NLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVT 428
Query: 507 YTTVISA 513
+ V+SA
Sbjct: 429 FLAVLSA 435
|
Length = 697 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 71.1 bits (174), Expect = 9e-13
Identities = 63/325 (19%), Positives = 142/325 (43%), Gaps = 5/325 (1%)
Query: 212 MKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGK 271
++ AG+ D Y ++ K G KV A+F + H + L D +
Sbjct: 463 VQEAGLKADCKLYTTLISTCAKSG---KVDAMFEVFHEMVNAGVEANVHTFGALIDGCAR 519
Query: 272 SGRAFEALKFFRDMKEKGILEDPSIYASLICSFASITEVKLAEELFKE--AEEKGMLRDP 329
+G+ +A + M+ K + D ++ +LI + V A ++ E AE + D
Sbjct: 520 AGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDH 579
Query: 330 EVCLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQ 389
L+ G V++ +V + + +K + + VN S++ + A+ +Y+
Sbjct: 580 ITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDD 639
Query: 390 LISQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGR 449
+ +G P +V ++++++ KA ++ + +++G V+YSS++
Sbjct: 640 MKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKN 699
Query: 450 IRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDKVSYTT 509
+ A+ L +K+ P V N+L+ L + ++ EM+R + P+ ++Y+
Sbjct: 700 WKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSI 759
Query: 510 VISAYNRAREFDMCVKFYNEFRMNG 534
++ A R + D+ + ++ + +G
Sbjct: 760 LLVASERKDDADVGLDLLSQAKEDG 784
|
Length = 1060 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 65.7 bits (160), Expect = 4e-11
Identities = 73/340 (21%), Positives = 149/340 (43%), Gaps = 28/340 (8%)
Query: 215 AGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGR 274
G+V D+ C +++ Y K GD E +F + K +T + + G
Sbjct: 253 TGVVGDTFVSCALIDMYSKCGDIEDARCVF-DGMPEK------TTVAWNSMLAGYALHGY 305
Query: 275 AFEALKFFRDMKEKGILEDPSIYASLICSFASITEVKLAEELFKEAEEKGMLRDPEVCLK 334
+ EAL + +M++ G+ D ++ +I F+ + ++ A++ G D
Sbjct: 306 SEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTA 365
Query: 335 LVLMYIEEGLVEKTLDVVESMKNAKLKISDCISC-AIVNGFSKRRGYWAAVKVYEQLISQ 393
LV +Y + G +E +V + ++ + IS A++ G+ AV+++E++I++
Sbjct: 366 LVDLYSKWGRMEDARNVFD-----RMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAE 420
Query: 394 GCIPGQVTYASIINAYCRIA-LYSKAEKVFIEMQQ-KGFDKCVVAYSSMVAMYGKTGRIR 451
G P VT+ ++++A CR + L + ++F M + + Y+ M+ + G+ G +
Sbjct: 421 GVAPNHVTFLAVLSA-CRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLD 479
Query: 452 DAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLR----QVEKLWKEMERRKVTPDKVSY 507
+A ++ + K P V ++ +L+ KNL EKL+ M K+ +Y
Sbjct: 480 EAYAMIRRAPFK---PTVNMWAALLTACRIHKNLELGRLAAEKLYG-MGPEKLN----NY 531
Query: 508 TTVISAYNRAREFDMCVKFYNEFRMNGGVIDRAIAGIMVG 547
+++ YN + K + G + A I V
Sbjct: 532 VVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVK 571
|
Length = 697 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 57.0 bits (139), Expect = 7e-11
Identities = 14/48 (29%), Positives = 29/48 (60%)
Query: 467 PNVWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDKVSYTTVISAY 514
P+V YN+L+D + + + + KL+ EM++R + P+ +Y+ +I
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 50.9 bits (123), Expect = 1e-08
Identities = 17/50 (34%), Positives = 32/50 (64%)
Query: 432 KCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGR 481
VV Y++++ Y K G++ +A+ L +MK +G +PNV+ Y+ L+D +
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 56.4 bits (136), Expect = 3e-08
Identities = 70/349 (20%), Positives = 155/349 (44%), Gaps = 33/349 (9%)
Query: 254 STPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEKGILEDPSIYASLICSFASITEVKLA 313
+P Y + L + GR + + DM+++G+L+ IY + F + + A
Sbjct: 369 KSPEYIDAY----NRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHA---KFFKACKKQRA 421
Query: 314 -EELFKEAEEKGMLRDPEVCLKLVLMYI--EEGLVEKTLDVVESMKNAKLK--------- 361
+E F+ A+ ++R+P + +LM + ++ L V+ ++ A LK
Sbjct: 422 VKEAFRFAK---LIRNPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTL 478
Query: 362 ISDCISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIALYSKAEKV 421
IS C V+ A +V+ ++++ G T+ ++I+ R +KA
Sbjct: 479 ISTCAKSGKVD---------AMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGA 529
Query: 422 FIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKA--KGCEPNVWIYNSLMDMH 479
+ M+ K V ++++++ G++G + A ++A+MKA +P+ +LM
Sbjct: 530 YGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKAC 589
Query: 480 GRAKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNRAREFDMCVKFYNEFRMNGGVIDR 539
A + + +++++ + + YT +++ ++ ++D + Y++ + G D
Sbjct: 590 ANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDE 649
Query: 540 AIAGIMVGVFSKLSQIEELVKLLQDMKSEGTKLDERLYHSAMNALRDAG 588
+V V +++ ++LQD + +G KL Y S M A +A
Sbjct: 650 VFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAK 698
|
Length = 1060 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 56.0 bits (135), Expect = 5e-08
Identities = 57/249 (22%), Positives = 108/249 (43%), Gaps = 15/249 (6%)
Query: 271 KSGRAFEALKFFRDMKEKGILEDPSIYASLICSFASITEVKLAEELFKEAEEKGMLRDPE 330
++G E L+ F M+E + D S+I + + + +L E+ + G D
Sbjct: 265 ENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVS 324
Query: 331 VCLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCIS-CAIVNGFSKRRGYWAAVKVYEQ 389
VC L+ MY+ G + V M + D +S A+++G+ K A++ Y
Sbjct: 325 VCNSLIQMYLSLGSWGEAEKVFSRM-----ETKDAVSWTAMISGYEKNGLPDKALETYAL 379
Query: 390 LISQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGR 449
+ P ++T AS+++A + K+ ++KG VV ++++ MY K
Sbjct: 380 MEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKC 439
Query: 450 IRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKL--WKEMERRKVTPDKVSY 507
I A+ + + K +V + S++ G N R E L +++M + P+ V+
Sbjct: 440 IDKALEVFHNIPEK----DVISWTSIIA--GLRLNNRCFEALIFFRQM-LLTLKPNSVTL 492
Query: 508 TTVISAYNR 516
+SA R
Sbjct: 493 IAALSACAR 501
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 54.9 bits (132), Expect = 1e-07
Identities = 66/316 (20%), Positives = 135/316 (42%), Gaps = 32/316 (10%)
Query: 262 YKILCDSLGKSGRAFEALKFFRDMKEKGILEDPSIYASLICSFASITEVKLAEELFKEAE 321
+ +L K+G EAL + M G+ D + ++ + I ++ E+
Sbjct: 155 WNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVV 214
Query: 322 EKGMLRDPEVCLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCISC-AIVNGFSKRRGY 380
G D +V L+ MY++ G V V + M DCIS A+++G+ +
Sbjct: 215 RFGFELDVDVVNALITMYVKCGDVVSARLVFDRM-----PRRDCISWNAMISGYFENGEC 269
Query: 381 WAAVKVYEQLISQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSM 440
++++ + P +T S+I+A + ++ + + GF V +S+
Sbjct: 270 LEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSL 329
Query: 441 VAMYGKTGRIRDAMWLVAKMKAK----------GCEPNVWIYNSLMDMHGRAKNLRQVEK 490
+ MY G +A + ++M+ K G E N L D + +E
Sbjct: 330 IQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYE-----KNGLPD--------KALE- 375
Query: 491 LWKEMERRKVTPDKVSYTTVISAYNRAREFDMCVKFYNEFRMNGGVIDRAI-AGIMVGVF 549
+ ME+ V+PD+++ +V+SA + D+ VK + E G+I + A ++ ++
Sbjct: 376 TYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLH-ELAERKGLISYVVVANALIEMY 434
Query: 550 SKLSQIEELVKLLQDM 565
SK I++ +++ ++
Sbjct: 435 SKCKCIDKALEVFHNI 450
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 51.0 bits (122), Expect = 1e-06
Identities = 67/374 (17%), Positives = 155/374 (41%), Gaps = 27/374 (7%)
Query: 216 GIVLDSGCYCQIMEAYYKIGDSEKVAALF--LECKSRKLDSTPFSTHMYKILCDSLGKSG 273
G +D +++ Y +G + +F +E K + S + L D
Sbjct: 318 GFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPD------ 371
Query: 274 RAFEALKFFRDMKEKGILEDPSIYASLICSFASITEVKLAEELFKEAEEKGMLRDPEVCL 333
+AL+ + M++ + D AS++ + A + ++ + +L + AE KG++ V
Sbjct: 372 ---KALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVAN 428
Query: 334 KLVLMYIEEGLVEKTLDVVESMKNAKLKISDCIS-CAIVNGFSKRRGYWAAVKVYEQLIS 392
L+ MY + ++K L+V ++ D IS +I+ G + A+ + Q++
Sbjct: 429 ALIEMYSKCKCIDKALEVFHNIPE-----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL 483
Query: 393 QGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRD 452
P VT + ++A RI +++ + + G ++++ +Y + GR+
Sbjct: 484 T-LKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNY 542
Query: 453 AMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDKVSYTTVIS 512
A W + E +V +N L+ + +L+ M V PD+V++ +++
Sbjct: 543 A-W----NQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLC 597
Query: 513 AYNRAREFDMCVKFYNEFRMNGGVI-DRAIAGIMVGVFSKLSQIEELVKLLQDMKSEGTK 571
A +R+ +++++ + + +V + + ++ E + M
Sbjct: 598 ACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP---IT 654
Query: 572 LDERLYHSAMNALR 585
D ++ + +NA R
Sbjct: 655 PDPAVWGALLNACR 668
|
Length = 857 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 49.5 bits (118), Expect = 4e-06
Identities = 68/322 (21%), Positives = 134/322 (41%), Gaps = 35/322 (10%)
Query: 208 VYEKMKSAGI--------VLDSGC--YCQIMEAY--YKIGDSEKVAALFLECKSRKLDST 255
V+ +M +AG+ L GC Q+ +A+ Y I S+ V K D
Sbjct: 494 VFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNV----------KPDRV 543
Query: 256 PFSTHMYKILCDSLGKSG---RAFEALKFFRDMK--EKGILEDPSIYASLICSFASITEV 310
F+ L + G+SG RAF+ L +MK I D +L+ + A+ +V
Sbjct: 544 VFNA-----LISACGQSGAVDRAFDVLA---EMKAETHPIDPDHITVGALMKACANAGQV 595
Query: 311 KLAEELFKEAEEKGMLRDPEVCLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCISCAI 370
A+E+++ E + PEV V ++G + L + + MK +K + A+
Sbjct: 596 DRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSAL 655
Query: 371 VNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQKGF 430
V+ A ++ + QG G V+Y+S++ A + KA +++ +++
Sbjct: 656 VDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKL 715
Query: 431 DKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEK 490
V ++++ + ++ A+ ++++MK G PN Y+ L+ R +
Sbjct: 716 RPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLD 775
Query: 491 LWKEMERRKVTPDKVSYTTVIS 512
L + + + P+ V +
Sbjct: 776 LLSQAKEDGIKPNLVMCRCITG 797
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 43.5 bits (104), Expect = 5e-06
Identities = 17/50 (34%), Positives = 28/50 (56%)
Query: 397 PGQVTYASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGK 446
P VTY ++I+ YC+ +A K+F EM+++G V YS ++ K
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 49.1 bits (117), Expect = 6e-06
Identities = 45/221 (20%), Positives = 99/221 (44%), Gaps = 7/221 (3%)
Query: 271 KSGRAFEALKFFRDMKEKGILEDPSIYASLICSFASITEVKLAEELFKEAEEKGMLRDPE 330
+G+ A + ++ + E I P +Y + S + + A ++ + ++KG+ D E
Sbjct: 591 NAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPD-E 649
Query: 331 VCLK-LVLMYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQ 389
V LV + G ++K ++++ + +K+ +++ S + + A+++YE
Sbjct: 650 VFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYED 709
Query: 390 LISQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGR 449
+ S P T ++I A C KA +V EM++ G + YS ++ +
Sbjct: 710 IKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDD 769
Query: 450 IRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEK 490
+ L+++ K G +PN+ + + + LR+ EK
Sbjct: 770 ADVGLDLLSQAKEDGIKPNLVMCRCITGL-----CLRRFEK 805
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 41.6 bits (99), Expect = 3e-05
Identities = 10/43 (23%), Positives = 25/43 (58%)
Query: 369 AIVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINAYCR 411
+++G+ K+ A+K++ ++ +G P TY+ +I+ C+
Sbjct: 8 TLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 39.6 bits (94), Expect = 8e-05
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 393 QGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQ 426
+G P VTY ++I+ CR +A ++ EM+
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 45.2 bits (107), Expect = 9e-05
Identities = 36/210 (17%), Positives = 81/210 (38%), Gaps = 43/210 (20%)
Query: 382 AAVKVYEQLISQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMV 441
VY + S G P Q ++ + + + A ++F EM ++ + ++ +++
Sbjct: 141 CVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMP----ERNLASWGTII 196
Query: 442 AMYGKTGRIRDAMWLVAKMKAKG--CEP-------------------------------- 467
G R+A L +M G EP
Sbjct: 197 GGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVV 256
Query: 468 -NVWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNRAREFDMCVKF 526
+ ++ +L+DM+ + ++ ++ M + V++ ++++ Y + +
Sbjct: 257 GDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTT----VAWNSMLAGYALHGYSEEALCL 312
Query: 527 YNEFRMNGGVIDRAIAGIMVGVFSKLSQIE 556
Y E R +G ID+ IM+ +FS+L+ +E
Sbjct: 313 YYEMRDSGVSIDQFTFSIMIRIFSRLALLE 342
|
Length = 697 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 39.4 bits (93), Expect = 1e-04
Identities = 12/33 (36%), Positives = 21/33 (63%)
Query: 471 IYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPD 503
YN+L+D +A + + +L+KEM+ R + PD
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 38.5 bits (91), Expect = 2e-04
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 463 KGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEME 496
KG +P+V YN+L+D RA + + +L EME
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 38.6 bits (91), Expect = 2e-04
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 400 VTYASIINAYCRIALYSKAEKVFIEMQQKGF 430
VTY S+I+ YC+ +A ++F EM++KG
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 42.6 bits (100), Expect = 6e-04
Identities = 56/274 (20%), Positives = 97/274 (35%), Gaps = 59/274 (21%)
Query: 129 QSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLA 188
Q WD +S+ +D K V PD S LV A A +LQ
Sbjct: 626 QKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQ------------ 673
Query: 189 FNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECK 248
+ GI L + Y +M A + +K L+ + K
Sbjct: 674 ----------------------DARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIK 711
Query: 249 SRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEKGILEDPSIYASLICSFASIT 308
S KL T L +L + + +AL+ +MK G+ + Y+ L+ +
Sbjct: 712 SIKLRPT---VSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKD 768
Query: 309 EVKLAEELFKEAEEKGMLRDPEVCLKLVLMYIEEGLVEKTL---DVVESMKNAKLKISDC 365
+ + +L +A+E G+ + +C + + + EK + V S + + +I +
Sbjct: 769 DADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRR--FEKACALGEPVVSFDSGRPQIEN- 825
Query: 366 ISCAIVNGFSKRRGYWA--AVKVYEQLISQGCIP 397
W A+ VY + IS G +P
Sbjct: 826 --------------KWTSWALMVYRETISAGTLP 845
|
Length = 1060 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 35.9 bits (84), Expect = 0.002
Identities = 10/31 (32%), Positives = 20/31 (64%)
Query: 400 VTYASIINAYCRIALYSKAEKVFIEMQQKGF 430
VTY ++I+ C+ +A ++F EM+++G
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGI 31
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 35.5 bits (83), Expect = 0.002
Identities = 13/35 (37%), Positives = 23/35 (65%)
Query: 435 VAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNV 469
V Y++++ K GR+ +A+ L +MK +G EP+V
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 35.5 bits (83), Expect = 0.002
Identities = 12/31 (38%), Positives = 21/31 (67%)
Query: 435 VAYSSMVAMYGKTGRIRDAMWLVAKMKAKGC 465
V Y+S+++ Y K G++ +A+ L +MK KG
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 603 | |||
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.96 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.95 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.92 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.92 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.92 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.91 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.9 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.9 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.89 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.89 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.88 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.88 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.88 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.88 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.86 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.85 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.84 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.82 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.79 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.78 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.77 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.76 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.76 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.75 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.72 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.72 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.69 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.68 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.63 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.63 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.62 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.62 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.62 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.61 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.6 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.59 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.58 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.58 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.58 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.56 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.54 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.53 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.53 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.52 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.51 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.5 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.5 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.49 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.48 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.47 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.43 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.43 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.4 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.39 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.39 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.36 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.36 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.34 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.34 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.33 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.32 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.29 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.28 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.26 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.25 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.25 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.24 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.22 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.21 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.21 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.16 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.16 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.14 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.13 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.13 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.1 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.07 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.07 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.04 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.04 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.02 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.99 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.96 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.96 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.94 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.93 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.91 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.9 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.9 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.9 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.89 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.85 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.83 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.78 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.78 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.78 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.77 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.76 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.74 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.73 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.7 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.7 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.68 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.68 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.64 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.6 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.6 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.58 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.57 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.54 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.54 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.52 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.52 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.51 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.49 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.48 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.44 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.44 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.4 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.4 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.35 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.33 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.29 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.28 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.28 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.26 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.17 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.14 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.11 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.06 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.05 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.05 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.05 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.01 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.0 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.0 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.99 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.98 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.96 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.93 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.89 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.79 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.75 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.74 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.7 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.67 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.66 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.66 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.65 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.65 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.63 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.61 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.6 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.6 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.59 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.57 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.57 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.57 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.56 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.53 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.52 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.49 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.45 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.45 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.44 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.4 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.38 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.35 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.34 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.33 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.32 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.28 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.27 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.25 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.23 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.23 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.19 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.18 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.17 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.17 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.17 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.14 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.14 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.11 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.07 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.07 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.07 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 97.07 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.05 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 97.04 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 97.04 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.02 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.0 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 96.99 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 96.97 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.91 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 96.82 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 96.78 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 96.74 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.73 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.7 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 96.7 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.7 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.67 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 96.61 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 96.61 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 96.57 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.49 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 96.46 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.44 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.42 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 96.4 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.34 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 96.34 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 96.28 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.23 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 96.18 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 96.06 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 96.0 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 95.98 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 95.92 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 95.88 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 95.81 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 95.81 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 95.73 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 95.58 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 95.56 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 95.55 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 95.54 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 95.45 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 95.44 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 95.29 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 95.2 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 95.17 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 95.12 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 95.11 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 95.08 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 95.06 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 95.0 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 94.94 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 94.89 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 94.89 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 94.82 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 94.77 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 94.75 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 94.63 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 94.55 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 94.47 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 94.33 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 94.31 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 94.28 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 94.07 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 93.99 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 93.96 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 93.9 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 93.88 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 93.62 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 93.56 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 93.52 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 93.47 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 93.43 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 93.35 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 93.34 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 93.28 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 92.81 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 92.53 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 92.51 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 92.49 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 92.36 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 92.13 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 92.08 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 91.83 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 91.68 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 91.64 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 91.63 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 91.27 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 90.82 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 90.44 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 90.27 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 90.22 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 90.17 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 89.71 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 89.37 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 89.12 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 89.01 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 88.96 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 88.91 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 88.87 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 88.55 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 88.49 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 88.29 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 88.07 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 87.79 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 87.64 | |
| PRK09687 | 280 | putative lyase; Provisional | 87.55 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 86.96 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 86.78 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 86.49 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 86.44 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 85.35 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 84.5 | |
| PRK09687 | 280 | putative lyase; Provisional | 84.38 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 84.32 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 83.88 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 83.55 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 83.13 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 83.0 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 82.87 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 82.83 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 82.32 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 82.3 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 81.25 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 81.11 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 81.03 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 80.72 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 80.41 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 80.32 | |
| KOG2063 | 877 | consensus Vacuolar assembly/sorting proteins VPS39 | 80.24 |
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-70 Score=581.87 Aligned_cols=516 Identities=15% Similarity=0.213 Sum_probs=486.2
Q ss_pred CCChhchhHHHHHHhcCCCChHHHHHHHHHHhhCCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 007461 77 VPDAKKFDSFLHGMLKDPQTQELAYDYYNEAKKLPEFRPEKSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCS 156 (603)
Q Consensus 77 ~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 156 (603)
.++...|..++..+++.++..+ |+++|++|.+..-+.++..+++.++..|.+.|..++|..+++.|.. ||..+|+
T Consensus 367 ~~~~~~~~~~y~~l~r~G~l~e-Al~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn 441 (1060)
T PLN03218 367 KRKSPEYIDAYNRLLRDGRIKD-CIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFN 441 (1060)
T ss_pred CCCchHHHHHHHHHHHCcCHHH-HHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHH
Confidence 3445668889999999998887 9999999998744567888899999999999999999999999963 9999999
Q ss_pred HHHHHHHccCChHHHHHHHHHHHhcCC-cchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcC
Q 007461 157 RLVASCVRARKFKIANTLLQVFITDGE-IALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIG 235 (603)
Q Consensus 157 ~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g 235 (603)
.++.+|++.|+++.|.++|+.|.+.+. +|..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|
T Consensus 442 ~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G 521 (1060)
T PLN03218 442 MLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAG 521 (1060)
T ss_pred HHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCc
Confidence 999999999999999999999999887 8999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHH--CCCCCCHHHHHHHHHHHHccCCHHHH
Q 007461 236 DSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKE--KGILEDPSIYASLICSFASITEVKLA 313 (603)
Q Consensus 236 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~g~~p~~~~~~~ll~~~~~~g~~~~a 313 (603)
++++|.++|++|...+..|+ ..+|+.||.+|++.|++++|.++|++|.. .|+.||..+|+.+|.+|++.|++++|
T Consensus 522 ~~eeAl~lf~~M~~~Gv~PD---~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA 598 (1060)
T PLN03218 522 QVAKAFGAYGIMRSKNVKPD---RVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRA 598 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHH
Confidence 99999999999999988764 58999999999999999999999999986 68999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 007461 314 EELFKEAEEKGMLRDPEVCLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLISQ 393 (603)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 393 (603)
.++|+.|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+.
T Consensus 599 ~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~ 678 (1060)
T PLN03218 599 KEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQ 678 (1060)
T ss_pred HHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhHHH
Q 007461 394 GCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYN 473 (603)
Q Consensus 394 g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 473 (603)
|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+.|+.||..+|+
T Consensus 679 G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~ 758 (1060)
T PLN03218 679 GIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYS 758 (1060)
T ss_pred CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----c-------------------CCHHHHHHHHHHH
Q 007461 474 SLMDMHGRAKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNR----A-------------------REFDMCVKFYNEF 530 (603)
Q Consensus 474 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~-------------------g~~~~a~~~~~~~ 530 (603)
.++.+|++.|++++|.+++++|.+.|+.||..+|+.++..|.+ + +..++|..+|++|
T Consensus 759 sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM 838 (1060)
T PLN03218 759 ILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRET 838 (1060)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999876542 1 1246799999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHhhccC
Q 007461 531 RMNGGVIDRAIAGIMVGVFSKLSQIEELVKLLQDMKSEGTKLDERLYHSAMNALRDAGLQMQAQWLQQNFEG 602 (603)
Q Consensus 531 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~ 602 (603)
++.|+.||..+|+.++.++++.+..+.+..+++.|...+..|+..+|+++++++.+. .++|..+++++..
T Consensus 839 ~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~ 908 (1060)
T PLN03218 839 ISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAAS 908 (1060)
T ss_pred HHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999889999999999999998443 3689999998853
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-69 Score=573.69 Aligned_cols=493 Identities=17% Similarity=0.249 Sum_probs=465.1
Q ss_pred HHHHHHHHhhCCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHccCChHHHHHHHHHH
Q 007461 100 AYDYYNEAKKLPEFRPEKSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNV-LPDAHTCSRLVASCVRARKFKIANTLLQVF 178 (603)
Q Consensus 100 a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 178 (603)
+...++..... .++...|..++..|++.|++++|+++|++|.+.|+ .++..+++.++..|.+.|..++|..+++.|
T Consensus 356 ~~~~~~~~~~~---~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M 432 (1060)
T PLN03218 356 SLAAYNGGVSG---KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLI 432 (1060)
T ss_pred hHHHhccccCC---CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHc
Confidence 44444444332 56788899999999999999999999999999985 567888899999999999999999999988
Q ss_pred HhcCCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCcc
Q 007461 179 ITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFS 258 (603)
Q Consensus 179 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 258 (603)
.. ++..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|...+..| |
T Consensus 433 ~~---pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~P---d 506 (1060)
T PLN03218 433 RN---PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEA---N 506 (1060)
T ss_pred CC---CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCC---C
Confidence 75 89999999999999999999999999999999999999999999999999999999999999999988776 4
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH--cCCCCCHHHHHHHH
Q 007461 259 THMYKILCDSLGKSGRAFEALKFFRDMKEKGILEDPSIYASLICSFASITEVKLAEELFKEAEE--KGMLRDPEVCLKLV 336 (603)
Q Consensus 259 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~~~~~l~ 336 (603)
..+|+.||.+|++.|++++|+++|++|.+.|+.||..+|+.+|.+|++.|++++|.+++++|.+ .|+.||..+|+.++
T Consensus 507 vvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI 586 (1060)
T PLN03218 507 VHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALM 586 (1060)
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHH
Confidence 6899999999999999999999999999999999999999999999999999999999999987 57899999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChH
Q 007461 337 LMYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIALYS 416 (603)
Q Consensus 337 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~ 416 (603)
.+|++.|++++|.++|+.|.+.++.|+..+|+.+|.+|++.|++++|+++|++|.+.|+.||..+|+.++.+|++.|+++
T Consensus 587 ~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~e 666 (1060)
T PLN03218 587 KACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLD 666 (1060)
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007461 417 KAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEME 496 (603)
Q Consensus 417 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 496 (603)
+|.++|++|.+.|+.|+..+|+.||.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.
T Consensus 667 eA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~ 746 (1060)
T PLN03218 667 KAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMK 746 (1060)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----c-------------------C
Q 007461 497 RRKVTPDKVSYTTVISAYNRAREFDMCVKFYNEFRMNGGVIDRAIAGIMVGVFSK----L-------------------S 553 (603)
Q Consensus 497 ~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~-------------------g 553 (603)
+.|+.||..||+.++.+|++.|++++|.+++++|.+.|+.||..+|+.++..|.+ + +
T Consensus 747 ~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~ 826 (1060)
T PLN03218 747 RLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENK 826 (1060)
T ss_pred HcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccc
Confidence 9999999999999999999999999999999999999999999999999876432 2 1
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHhhcc
Q 007461 554 QIEELVKLLQDMKSEGTKLDERLYHSAMNALRDAGLQMQAQWLQQNFE 601 (603)
Q Consensus 554 ~~~~A~~~~~~m~~~g~~~~~~~~~~ll~a~~~~g~~~~a~~~~~~~~ 601 (603)
..++|..+|++|.+.|+.||..||..++.++.+.+..+.+..+++.+.
T Consensus 827 w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~ 874 (1060)
T PLN03218 827 WTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLG 874 (1060)
T ss_pred hHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhc
Confidence 246799999999999999999999999988889999999999998763
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-69 Score=588.85 Aligned_cols=500 Identities=16% Similarity=0.229 Sum_probs=430.4
Q ss_pred CCCChhchhHHHHHHhcCCCChHHHHHHHHHHhhCCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 007461 76 AVPDAKKFDSFLHGMLKDPQTQELAYDYYNEAKKLPEFRPEKSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTC 155 (603)
Q Consensus 76 ~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 155 (603)
+.|+..+||.+|.++++.+...+ |+++|+.|... |+.||..||+.++++|++.+++..+.+++..+.+.|+.||..++
T Consensus 148 ~~~d~~~~n~li~~~~~~g~~~~-A~~~f~~M~~~-g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 225 (857)
T PLN03077 148 PERDLFSWNVLVGGYAKAGYFDE-ALCLYHRMLWA-GVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVV 225 (857)
T ss_pred CCCCeeEHHHHHHHHHhCCCHHH-HHHHHHHHHHc-CCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchH
Confidence 45788889999999999988877 99999999875 78888888877777666666666666666666666666666666
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCC------------------
Q 007461 156 SRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGI------------------ 217 (603)
Q Consensus 156 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~------------------ 217 (603)
+.|+.+|++.|++++|.++|+.|.. +|..+||.+|.+|++.|++++|+++|++|.+.|+
T Consensus 226 n~Li~~y~k~g~~~~A~~lf~~m~~---~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g 302 (857)
T PLN03077 226 NALITMYVKCGDVVSARLVFDRMPR---RDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLG 302 (857)
T ss_pred hHHHHHHhcCCCHHHHHHHHhcCCC---CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC
Confidence 6666666666666666666665532 3555566666666666666666666655555555
Q ss_pred -----------------CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccCCHHHHHH
Q 007461 218 -----------------VLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALK 280 (603)
Q Consensus 218 -----------------~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 280 (603)
.||..+|+.|+.+|++.|++++|.++|++|... |..+||.+|.+|++.|++++|++
T Consensus 303 ~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~-------d~~s~n~li~~~~~~g~~~~A~~ 375 (857)
T PLN03077 303 DERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETK-------DAVSWTAMISGYEKNGLPDKALE 375 (857)
T ss_pred ChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCC-------CeeeHHHHHHHHHhCCCHHHHHH
Confidence 455555556666666667777777777766543 34579999999999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 007461 281 FFRDMKEKGILEDPSIYASLICSFASITEVKLAEELFKEAEEKGMLRDPEVCLKLVLMYIEEGLVEKTLDVVESMKNAKL 360 (603)
Q Consensus 281 ~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 360 (603)
+|++|.+.|+.||..||+.++.+|++.|+++.|.++++.+.+.|+.++..+++.|+++|+++|++++|.++|++|.+.
T Consensus 376 lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~-- 453 (857)
T PLN03077 376 TYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEK-- 453 (857)
T ss_pred HHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCC--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999764
Q ss_pred CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHH
Q 007461 361 KISDCISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSM 440 (603)
Q Consensus 361 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 440 (603)
|..+|+.+|.+|++.|+.++|+.+|++|.. ++.||..||+.++.+|++.|+++.+.+++..+.+.|+.++..++++|
T Consensus 454 --d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naL 530 (857)
T PLN03077 454 --DVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNAL 530 (857)
T ss_pred --CeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHH
Confidence 556899999999999999999999999986 58999999999999999999999999999999999999999999999
Q ss_pred HHHHHccCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 007461 441 VAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNRAREF 520 (603)
Q Consensus 441 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 520 (603)
|++|+++|++++|.++|+++ .||..+||++|.+|+++|+.++|.++|++|.+.|+.||..||+.++.+|.+.|++
T Consensus 531 i~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v 605 (857)
T PLN03077 531 LDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMV 605 (857)
T ss_pred HHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChH
Confidence 99999999999999999987 5899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHhh
Q 007461 521 DMCVKFYNEFR-MNGGVIDRAIAGIMVGVFSKLSQIEELVKLLQDMKSEGTKLDERLYHSAMNALRDAGLQMQAQWLQQN 599 (603)
Q Consensus 521 ~~a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~a~~~~g~~~~a~~~~~~ 599 (603)
++|.++|+.|. +.|+.|+..+|+.++++|++.|++++|.+++++| ++.||..+|.+|+.+|..+|+.+.++...++
T Consensus 606 ~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m---~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~ 682 (857)
T PLN03077 606 TQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM---PITPDPAVWGALLNACRIHRHVELGELAAQH 682 (857)
T ss_pred HHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 99999999999 6799999999999999999999999999999999 5899999999999999999999888777665
Q ss_pred c
Q 007461 600 F 600 (603)
Q Consensus 600 ~ 600 (603)
+
T Consensus 683 l 683 (857)
T PLN03077 683 I 683 (857)
T ss_pred H
Confidence 4
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-69 Score=583.47 Aligned_cols=503 Identities=17% Similarity=0.241 Sum_probs=391.4
Q ss_pred CCChhchhHHHHHHhcCCCChHHHHHHHHHHhhCCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 007461 77 VPDAKKFDSFLHGMLKDPQTQELAYDYYNEAKKLPEFRPEKSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCS 156 (603)
Q Consensus 77 ~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 156 (603)
.|+...+|.++..+++.+...+ |..+|+.|.+. |++|+..+|..++..|.+.+..+.+.+++..+.+.+..++...++
T Consensus 48 ~~~~~~~n~~i~~l~~~g~~~~-A~~l~~~m~~~-g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n 125 (857)
T PLN03077 48 SSSTHDSNSQLRALCSHGQLEQ-ALKLLESMQEL-RVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGN 125 (857)
T ss_pred ccchhhHHHHHHHHHhCCCHHH-HHHHHHHHHhc-CCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHH
Confidence 3445558888888888888776 88888888774 667777777666666555555555555555555555455555555
Q ss_pred HHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHHHHHHHH-----------------------
Q 007461 157 RLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMK----------------------- 213 (603)
Q Consensus 157 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~----------------------- 213 (603)
.++..|.+.|+++.|.++|++|. .+|..+||.+|.+|++.|++++|+++|++|.
T Consensus 126 ~li~~~~~~g~~~~A~~~f~~m~---~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~ 202 (857)
T PLN03077 126 AMLSMFVRFGELVHAWYVFGKMP---ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPD 202 (857)
T ss_pred HHHHHHHhCCChHHHHHHHhcCC---CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccc
Confidence 55555555555555555555443 2344555555555555555555555555554
Q ss_pred ------------hCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccCCHHHHHHH
Q 007461 214 ------------SAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKF 281 (603)
Q Consensus 214 ------------~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 281 (603)
+.|+.||..+++.|+.+|++.|+++.|.++|++|...+ ..+||.+|.+|++.|++++|+++
T Consensus 203 ~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d-------~~s~n~li~~~~~~g~~~eAl~l 275 (857)
T PLN03077 203 LARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRD-------CISWNAMISGYFENGECLEGLEL 275 (857)
T ss_pred hhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCC-------cchhHHHHHHHHhCCCHHHHHHH
Confidence 44555555566778888899999999999999987543 45899999999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC
Q 007461 282 FRDMKEKGILEDPSIYASLICSFASITEVKLAEELFKEAEEKGMLRDPEVCLKLVLMYIEEGLVEKTLDVVESMKNAKLK 361 (603)
Q Consensus 282 ~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 361 (603)
|++|.+.|+.||..||+.++.+|++.|+++.+.+++..+.+.|+.||..+|+.|+.+|+++|++++|.++|++|.+
T Consensus 276 f~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---- 351 (857)
T PLN03077 276 FFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET---- 351 (857)
T ss_pred HHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC----
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999975
Q ss_pred CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHH
Q 007461 362 ISDCISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMV 441 (603)
Q Consensus 362 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 441 (603)
||..+|+.+|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++++.+.+.|+.|+..+|+.||
T Consensus 352 ~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li 431 (857)
T PLN03077 352 KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALI 431 (857)
T ss_pred CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHH
Confidence 56679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHccCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH---------------
Q 007461 442 AMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDKVS--------------- 506 (603)
Q Consensus 442 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~--------------- 506 (603)
++|++.|++++|.++|++|.+ +|..+|+.+|.+|++.|+.++|..+|++|.. ++.||..|
T Consensus 432 ~~y~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~ 506 (857)
T PLN03077 432 EMYSKCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALM 506 (857)
T ss_pred HHHHHcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHH
Confidence 999999999999999999874 5778888888888888888888888888865 45565544
Q ss_pred --------------------------------------------------HHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 007461 507 --------------------------------------------------YTTVISAYNRAREFDMCVKFYNEFRMNGGV 536 (603)
Q Consensus 507 --------------------------------------------------~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 536 (603)
|+++|.+|++.|+.++|.++|++|.+.|+.
T Consensus 507 ~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~ 586 (857)
T PLN03077 507 CGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVN 586 (857)
T ss_pred HhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 455555555666666666666666666666
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHhhc
Q 007461 537 IDRAIAGIMVGVFSKLSQIEELVKLLQDMK-SEGTKLDERLYHSAMNALRDAGLQMQAQWLQQNF 600 (603)
Q Consensus 537 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-~~g~~~~~~~~~~ll~a~~~~g~~~~a~~~~~~~ 600 (603)
||..+|+.++.+|.+.|++++|.++|++|. +.|+.|+..+|+.++++|.+.|+.++|.+++++|
T Consensus 587 Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m 651 (857)
T PLN03077 587 PDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM 651 (857)
T ss_pred CCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC
Confidence 666666666666666666666666666666 4466666666666666666666666666666655
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-64 Score=537.78 Aligned_cols=473 Identities=14% Similarity=0.185 Sum_probs=451.1
Q ss_pred ChhchhHHHHHHhcCCCChHHHHHHHHHHhhCCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 007461 79 DAKKFDSFLHGMLKDPQTQELAYDYYNEAKKLPEFRPEKSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRL 158 (603)
Q Consensus 79 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 158 (603)
+..+|+.+|.++.+.++..+ |+++|++|....++.||..+|+.++.+|++.++++.+.+++..|.+.|+.||..+|+.+
T Consensus 86 ~~~~~~~~i~~l~~~g~~~~-Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~L 164 (697)
T PLN03081 86 SGVSLCSQIEKLVACGRHRE-ALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRV 164 (697)
T ss_pred CceeHHHHHHHHHcCCCHHH-HHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHH
Confidence 34579999999999999877 99999999987678899999999999999999999999999999999999999999999
Q ss_pred HHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCHH
Q 007461 159 VASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSE 238 (603)
Q Consensus 159 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~ 238 (603)
+.+|++.|+++.|.++|++|.+ ++..+||.++.+|++.|++++|+++|++|.+.|+.||..+|+.++.+|++.|+.+
T Consensus 165 i~~y~k~g~~~~A~~lf~~m~~---~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~ 241 (697)
T PLN03081 165 LLMHVKCGMLIDARRLFDEMPE---RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSAR 241 (697)
T ss_pred HHHHhcCCCHHHHHHHHhcCCC---CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHH
Confidence 9999999999999999999864 7999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 007461 239 KVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEKGILEDPSIYASLICSFASITEVKLAEELFK 318 (603)
Q Consensus 239 ~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 318 (603)
.+.+++..+...+..++ ..+||.|+++|++.|++++|.++|++|. .+|..+|+.+|.+|++.|+.++|.++|+
T Consensus 242 ~~~~l~~~~~~~g~~~d---~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA~~lf~ 314 (697)
T PLN03081 242 AGQQLHCCVLKTGVVGD---TFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYY 314 (697)
T ss_pred HHHHHHHHHHHhCCCcc---ceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCCHHHHHHHHH
Confidence 99999999999888764 4789999999999999999999999996 4589999999999999999999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 007461 319 EAEEKGMLRDPEVCLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPG 398 (603)
Q Consensus 319 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~ 398 (603)
+|.+.|+.||..+|+.++.+|++.|++++|.+++..|.+.++.|+..+|++|+.+|++.|++++|.++|++|. .||
T Consensus 315 ~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d 390 (697)
T PLN03081 315 EMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKN 390 (697)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999996 489
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCCHHHHHHHHHHHHH-cCCCCCHhHHHHHHH
Q 007461 399 QVTYASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKA-KGCEPNVWIYNSLMD 477 (603)
Q Consensus 399 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~~p~~~~~~~li~ 477 (603)
..+|+.+|.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|.+ .|+.|+..+|+.+++
T Consensus 391 ~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~ 470 (697)
T PLN03081 391 LISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIE 470 (697)
T ss_pred eeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999986 599999999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCCHH
Q 007461 478 MHGRAKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNRAREFDMCVKFYNEFRMNGGVI-DRAIAGIMVGVFSKLSQIE 556 (603)
Q Consensus 478 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~ 556 (603)
+|++.|++++|.+++++| ++.|+..+|++|+.+|...|+++.|..+++++.+. .| +..+|..|++.|++.|+++
T Consensus 471 ~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~--~p~~~~~y~~L~~~y~~~G~~~ 545 (697)
T PLN03081 471 LLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGM--GPEKLNNYVVLLNLYNSSGRQA 545 (697)
T ss_pred HHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCC--CCCCCcchHHHHHHHHhCCCHH
Confidence 999999999999999876 67899999999999999999999999999999764 44 4679999999999999999
Q ss_pred HHHHHHHHHHhCCCC
Q 007461 557 ELVKLLQDMKSEGTK 571 (603)
Q Consensus 557 ~A~~~~~~m~~~g~~ 571 (603)
+|.+++++|.+.|+.
T Consensus 546 ~A~~v~~~m~~~g~~ 560 (697)
T PLN03081 546 EAAKVVETLKRKGLS 560 (697)
T ss_pred HHHHHHHHHHHcCCc
Confidence 999999999999875
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-62 Score=521.57 Aligned_cols=469 Identities=16% Similarity=0.197 Sum_probs=445.2
Q ss_pred CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCC-cchhhHHH
Q 007461 114 RPEKSTLKLLIRYLVQSKKWDSIVSLSEDFKIYN-VLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGE-IALLAFNS 191 (603)
Q Consensus 114 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~ 191 (603)
.++..+|+.+|..+.+.|++++|+++|+.|...+ +.||..+|+.++.+|.+.++++.+.+++..+.+.+. ++..+||.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 4567799999999999999999999999998764 689999999999999999999999999999998876 89999999
Q ss_pred HHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhc
Q 007461 192 AMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGK 271 (603)
Q Consensus 192 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 271 (603)
++.+|++.|++++|.++|++|.+ ||..+|+.++.+|++.|++++|.++|++|.+.+..++ ..+|+.++.++.+
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~---~~t~~~ll~a~~~ 236 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAE---PRTFVVMLRASAG 236 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCC---hhhHHHHHHHHhc
Confidence 99999999999999999999964 7999999999999999999999999999999887764 4799999999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 007461 272 SGRAFEALKFFRDMKEKGILEDPSIYASLICSFASITEVKLAEELFKEAEEKGMLRDPEVCLKLVLMYIEEGLVEKTLDV 351 (603)
Q Consensus 272 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 351 (603)
.|..+.+.+++..+.+.|+.||..+|+.++.+|++.|++++|.++|+.|.+ +|..+|+.++.+|++.|++++|.++
T Consensus 237 ~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~l 312 (697)
T PLN03081 237 LGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCL 312 (697)
T ss_pred CCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHH
Confidence 999999999999999999999999999999999999999999999999853 6899999999999999999999999
Q ss_pred HHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 007461 352 VESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQKGFD 431 (603)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 431 (603)
|++|.+.|+.||..+|+.++.+|++.|++++|.+++..|.+.|+.||..+|+.++.+|++.|++++|.++|++|. .
T Consensus 313 f~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~ 388 (697)
T PLN03081 313 YYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----R 388 (697)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----C
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999986 4
Q ss_pred cCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHh-CCCCCCHHHHHHH
Q 007461 432 KCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEMER-RKVTPDKVSYTTV 510 (603)
Q Consensus 432 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-~~~~p~~~~~~~l 510 (603)
||..+||.||.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|.+.|++++|.++|+.|.+ .|+.|+..+|+.+
T Consensus 389 ~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~l 468 (697)
T PLN03081 389 KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACM 468 (697)
T ss_pred CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhH
Confidence 689999999999999999999999999999999999999999999999999999999999999975 6899999999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCc
Q 007461 511 ISAYNRAREFDMCVKFYNEFRMNGGVIDRAIAGIMVGVFSKLSQIEELVKLLQDMKSEGTKLD-ERLYHSAMNALRDAGL 589 (603)
Q Consensus 511 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~-~~~~~~ll~a~~~~g~ 589 (603)
+.+|++.|++++|.+++++| +..|+..+|+.|+.+|...|+++.|..+++++.+ +.|+ ..+|..|++.|.+.|+
T Consensus 469 i~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~~~~y~~L~~~y~~~G~ 543 (697)
T PLN03081 469 IELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG--MGPEKLNNYVVLLNLYNSSGR 543 (697)
T ss_pred HHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--CCCCCCcchHHHHHHHHhCCC
Confidence 99999999999999998865 5789999999999999999999999999999974 4564 6799999999999999
Q ss_pred HHHHHHHHhhccC
Q 007461 590 QMQAQWLQQNFEG 602 (603)
Q Consensus 590 ~~~a~~~~~~~~~ 602 (603)
+++|.++++.|+.
T Consensus 544 ~~~A~~v~~~m~~ 556 (697)
T PLN03081 544 QAEAAKVVETLKR 556 (697)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998863
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-31 Score=295.70 Aligned_cols=501 Identities=11% Similarity=0.038 Sum_probs=358.0
Q ss_pred hhHHHHHHhcCCCChHHHHHHHHHHhhCCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC---------------
Q 007461 83 FDSFLHGMLKDPQTQELAYDYYNEAKKLPEFRPEKSTLKLLIRYLVQSKKWDSIVSLSEDFKIYN--------------- 147 (603)
Q Consensus 83 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------------- 147 (603)
+..+...+...++..+ |.++|+.+.+.. +.+...+..+...+...|++++|++.++.+.+..
T Consensus 366 ~~~l~~~~~~~g~~~~-A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~ 442 (899)
T TIGR02917 366 LSLLGEAYLALGDFEK-AAEYLAKATELD--PENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYL 442 (899)
T ss_pred HHHHHHHHHHCCCHHH-HHHHHHHHHhcC--CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHH
Confidence 4445555555555554 666666665432 2234445555555555555555555555544332
Q ss_pred ------------------CCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHHHH
Q 007461 148 ------------------VLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVY 209 (603)
Q Consensus 148 ------------------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 209 (603)
.+++..++..+...+...|++++|...|+++....+.+..++..+...+...|++++|.+.+
T Consensus 443 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 522 (899)
T TIGR02917 443 RSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRF 522 (899)
T ss_pred hcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 13445556666666666666666666666666655555566666666666666666666666
Q ss_pred HHHHhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHCC
Q 007461 210 EKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEKG 289 (603)
Q Consensus 210 ~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 289 (603)
+++.+.+. .+..++..+...+.+.|+.++|..+++++...++. +...+..++..+...|++++|+++++.+.+..
T Consensus 523 ~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 597 (899)
T TIGR02917 523 EKVLTIDP-KNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQ----EIEPALALAQYYLGKGQLKKALAILNEAADAA 597 (899)
T ss_pred HHHHHhCc-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc----chhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 66665432 24556666666666677777777777666554432 23456667777777777777777777776542
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHH
Q 007461 290 ILEDPSIYASLICSFASITEVKLAEELFKEAEEKGMLRDPEVCLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCISCA 369 (603)
Q Consensus 290 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 369 (603)
+.+...|..+...+...|++++|...++.+.+.. +.+...+..+...|.+.|++++|...++++.+..+ .+..++..
T Consensus 598 -~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~ 674 (899)
T TIGR02917 598 -PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELKP-DNTEAQIG 674 (899)
T ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHH
Confidence 3356677777777777888888888887777654 33566677777778888888888888887776654 34567777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCC
Q 007461 370 IVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGR 449 (603)
Q Consensus 370 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 449 (603)
++..+...|++++|.++++.+.+.+ +.+...+..+...+...|++++|...|+.+.+.+ |+..++..+...+.+.|+
T Consensus 675 l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~ 751 (899)
T TIGR02917 675 LAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGN 751 (899)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCC
Confidence 7888888888888888888887765 4456677777788888888888888888887764 444677778888888888
Q ss_pred HHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 007461 450 IRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNRAREFDMCVKFYNE 529 (603)
Q Consensus 450 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 529 (603)
+++|.+.++++.+. .+.+...+..+...|...|+.++|...|+++.+.. +++...++.+...+...|+ .+|+.++++
T Consensus 752 ~~~A~~~~~~~l~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~ 828 (899)
T TIGR02917 752 TAEAVKTLEAWLKT-HPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEK 828 (899)
T ss_pred HHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHH
Confidence 88888888888876 35577788888888888999999999999988754 3466778888888888888 779999998
Q ss_pred HHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHhhccC
Q 007461 530 FRMNGGVIDRAIAGIMVGVFSKLSQIEELVKLLQDMKSEGTKLDERLYHSAMNALRDAGLQMQAQWLQQNFEG 602 (603)
Q Consensus 530 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~ 602 (603)
+.+.... ++..+..+...+...|++++|.+.++++.+.+. .+..++..+..++.+.|+.++|.++++++.+
T Consensus 829 ~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 899 (899)
T TIGR02917 829 ALKLAPN-IPAILDTLGWLLVEKGEADRALPLLRKAVNIAP-EAAAIRYHLALALLATGRKAEARKELDKLLN 899 (899)
T ss_pred HHhhCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHhC
Confidence 8876433 556778889999999999999999999998764 4889999999999999999999999998753
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-30 Score=285.66 Aligned_cols=500 Identities=13% Similarity=0.059 Sum_probs=292.7
Q ss_pred hhHHHHHHhcCCCChHHHHHHHHHHhhCCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 007461 83 FDSFLHGMLKDPQTQELAYDYYNEAKKLPEFRPEKSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASC 162 (603)
Q Consensus 83 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 162 (603)
+..+...+...++..+ |...++.+.+.. +.+...+..+...+.+.|++++|.++|+++.+.. +.+...+..+...+
T Consensus 332 ~~~la~~~~~~g~~~~-A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 407 (899)
T TIGR02917 332 RRLLASIQLRLGRVDE-AIATLSPALGLD--PDDPAALSLLGEAYLALGDFEKAAEYLAKATELD-PENAAARTQLGISK 407 (899)
T ss_pred HHHHHHHHHHCCCHHH-HHHHHHHHHhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 5556666777777776 999999998753 5578889999999999999999999999998765 45667777788888
Q ss_pred HccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCHHHHHH
Q 007461 163 VRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAA 242 (603)
Q Consensus 163 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~ 242 (603)
...|++++|...++.+....+.....+..++..+.+.|++++|..+++.+.+.. +.+..++..+...+...|++++|.+
T Consensus 408 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~ 486 (899)
T TIGR02917 408 LSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQ-PDNASLHNLLGAIYLGKGDLAKARE 486 (899)
T ss_pred HhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHHhCCCHHHHHH
Confidence 888888888888888877766555666666777777777777777777776542 3355666777777777777777777
Q ss_pred HHHHHHhCCCCCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 007461 243 LFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEKGILEDPSIYASLICSFASITEVKLAEELFKEAEE 322 (603)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 322 (603)
.|+++...++. +...+..++..+...|++++|.+.|+++...+ +.+..++..+...+.+.|+.++|..+++++.+
T Consensus 487 ~~~~a~~~~~~----~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 561 (899)
T TIGR02917 487 AFEKALSIEPD----FFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAE 561 (899)
T ss_pred HHHHHHhhCCC----cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 77766654332 22355566666666666666666666665542 22444555555555556666666666655554
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 007461 323 KGMLRDPEVCLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTY 402 (603)
Q Consensus 323 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~ 402 (603)
.+ +.+...+..++..|.+.|++++|..+++.+.+..+ .+...|..+...+...|++++|+..|+++.+.. +.+...+
T Consensus 562 ~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 638 (899)
T TIGR02917 562 LN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAAP-DSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALAL 638 (899)
T ss_pred hC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHH
Confidence 43 22344445555555555555555555555554433 234445555555555555555555555554432 2233444
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcC------------------
Q 007461 403 ASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKG------------------ 464 (603)
Q Consensus 403 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~------------------ 464 (603)
..+...+...|++++|..+++++.+.. +.+...+..++..+...|++++|.++++.+.+..
T Consensus 639 ~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 717 (899)
T TIGR02917 639 LLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQK 717 (899)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCC
Confidence 445555555555555555555554432 3334444444444444455555544444444432
Q ss_pred --------------CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007461 465 --------------CEPNVWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNRAREFDMCVKFYNEF 530 (603)
Q Consensus 465 --------------~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 530 (603)
..|+..++..+..++...|++++|.+.++++.+.. +.+...+..+...|...|++++|.+.|+++
T Consensus 718 ~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 796 (899)
T TIGR02917 718 DYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTV 796 (899)
T ss_pred CHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 12333344444444555555555555555544321 223444455555555555555555555555
Q ss_pred HHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHhhc
Q 007461 531 RMNGGVIDRAIAGIMVGVFSKLSQIEELVKLLQDMKSEGTKLDERLYHSAMNALRDAGLQMQAQWLQQNF 600 (603)
Q Consensus 531 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~a~~~~g~~~~a~~~~~~~ 600 (603)
.+... .+...++.+...+.+.|+ .+|+.+++++.+.. +-+..++..+...+...|++++|...+++.
T Consensus 797 ~~~~p-~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a 863 (899)
T TIGR02917 797 VKKAP-DNAVVLNNLAWLYLELKD-PRALEYAEKALKLA-PNIPAILDTLGWLLVEKGEADRALPLLRKA 863 (899)
T ss_pred HHhCC-CCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 54432 244445555555555555 44555555555431 223344445555556666666666666554
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1e-22 Score=227.50 Aligned_cols=511 Identities=10% Similarity=0.009 Sum_probs=350.2
Q ss_pred CCCChhc-hhHHHHHHhcCCCChHHHHHHHHHHhhCCCCCCCHHhH----------------HHHHHHHHhcCCHHHHHH
Q 007461 76 AVPDAKK-FDSFLHGMLKDPQTQELAYDYYNEAKKLPEFRPEKSTL----------------KLLIRYLVQSKKWDSIVS 138 (603)
Q Consensus 76 ~~p~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~----------------~~l~~~~~~~~~~~~a~~ 138 (603)
..|+.+. +......+...++..+ |.+.++++.+.. +.+.... ..+...+.+.|++++|++
T Consensus 57 ~~p~~p~~~~~~~~~~l~~g~~~~-A~~~l~~l~~~~--P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~ 133 (1157)
T PRK11447 57 IDPNNPDVIAARFRLLLRQGDSDG-AQKLLDRLSQLA--PDSNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALA 133 (1157)
T ss_pred cCCCCHHHHHHHHHHHHhCCCHHH-HHHHHHHHHhhC--CCChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHH
Confidence 3454433 5555566667777766 999999988753 2333322 233456788899999999
Q ss_pred HHHHHHhCCCCCCHH-HHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCC
Q 007461 139 LSEDFKIYNVLPDAH-TCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGI 217 (603)
Q Consensus 139 ~~~~~~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~ 217 (603)
.|+.+.+.+ +|+.. ............|+.++|++.|+++.+..|.+...+..+...+...|++++|+..++++.+...
T Consensus 134 ~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~ 212 (1157)
T PRK11447 134 SYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPA 212 (1157)
T ss_pred HHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCC
Confidence 999988765 44432 2212222233458999999999999998888888999999999999999999999988754321
Q ss_pred ------------------C--------------CChhhH---------------------HHHHHHHHHcCCHHHHHHHH
Q 007461 218 ------------------V--------------LDSGCY---------------------CQIMEAYYKIGDSEKVAALF 244 (603)
Q Consensus 218 ------------------~--------------p~~~~~---------------------~~ll~~~~~~g~~~~a~~~~ 244 (603)
. |+.... ......+...|++++|+..|
T Consensus 213 ~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l 292 (1157)
T PRK11447 213 GRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPEL 292 (1157)
T ss_pred chHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHH
Confidence 0 110000 01134466789999999999
Q ss_pred HHHHhCCCCCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCC-CHHHH------------HHHHHHHHccCCHH
Q 007461 245 LECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEKGILE-DPSIY------------ASLICSFASITEVK 311 (603)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~------------~~ll~~~~~~g~~~ 311 (603)
++....++. +..++..+...+.+.|++++|++.|++..+..... +...+ ......+.+.|+++
T Consensus 293 ~~aL~~~P~----~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~ 368 (1157)
T PRK11447 293 QQAVRANPK----DSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLA 368 (1157)
T ss_pred HHHHHhCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHH
Confidence 998876543 34688899999999999999999999988753221 11111 12234566889999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHH---------------------
Q 007461 312 LAEELFKEAEEKGMLRDPEVCLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCISCAI--------------------- 370 (603)
Q Consensus 312 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l--------------------- 370 (603)
+|...++++.+.. +.+...+..+...|...|++++|.+.|++..+..+. +...+..+
T Consensus 369 eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a~~~L~~l~~~~~~~~A~~~l~~l~~ 446 (1157)
T PRK11447 369 QAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NTNAVRGLANLYRQQSPEKALAFIASLSA 446 (1157)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCHHHHHHHHHhCCH
Confidence 9999999998875 346677888899999999999999999998876543 22233222
Q ss_pred ---------------------HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 007461 371 ---------------------VNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQKG 429 (603)
Q Consensus 371 ---------------------i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 429 (603)
...+...|++++|++.|++..+.. +-+...+..+...|.+.|++++|...++++.+..
T Consensus 447 ~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~ 525 (1157)
T PRK11447 447 SQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQK 525 (1157)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 233445678888888888877654 2244566677778888888888888888877653
Q ss_pred CCcCHhhHHHHHHHHHccCCHHHHHHHHHHHHHc---------------------------------------CCCCCHh
Q 007461 430 FDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAK---------------------------------------GCEPNVW 470 (603)
Q Consensus 430 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---------------------------------------~~~p~~~ 470 (603)
+.+...+..+...+.+.|+.++|...++.+... ..+.+..
T Consensus 526 -P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~ 604 (1157)
T PRK11447 526 -PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTR 604 (1157)
T ss_pred -CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCch
Confidence 223333333333334444444444444332110 0133455
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 007461 471 IYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNRAREFDMCVKFYNEFRMNGGVIDRAIAGIMVGVFS 550 (603)
Q Consensus 471 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 550 (603)
.+..+...+.+.|+.++|+..|++..+.. +.+...+..+...|...|++++|++.++.+.+.... +...+..+..++.
T Consensus 605 ~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~-~~~~~~~la~~~~ 682 (1157)
T PRK11447 605 IDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPATAND-SLNTQRRVALAWA 682 (1157)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCC-ChHHHHHHHHHHH
Confidence 66667778888889999999998888653 224567888888888889999999999887764322 4556667788888
Q ss_pred ccCCHHHHHHHHHHHHhCCC--CC---CHHHHHHHHHHHHhcCcHHHHHHHHhhc
Q 007461 551 KLSQIEELVKLLQDMKSEGT--KL---DERLYHSAMNALRDAGLQMQAQWLQQNF 600 (603)
Q Consensus 551 ~~g~~~~A~~~~~~m~~~g~--~~---~~~~~~~ll~a~~~~g~~~~a~~~~~~~ 600 (603)
..|++++|.++++++.+..- .| +...+..+...+...|+.++|+..+++.
T Consensus 683 ~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~A 737 (1157)
T PRK11447 683 ALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDA 737 (1157)
T ss_pred hCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 89999999999998876522 12 2345666677888889999999888764
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.5e-22 Score=221.73 Aligned_cols=500 Identities=9% Similarity=-0.004 Sum_probs=357.2
Q ss_pred HhcCCCChHHHHHHHHHHhhCCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH--------------
Q 007461 90 MLKDPQTQELAYDYYNEAKKLPEFRPEKSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTC-------------- 155 (603)
Q Consensus 90 ~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-------------- 155 (603)
+....+..+.|.+.++++.... +.++..+..++..+.+.|+.++|.+.++++.+.. +.+....
T Consensus 37 ~~~~~~~~d~a~~~l~kl~~~~--p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~-P~~~~~~~~~~~~~~~~~~~~ 113 (1157)
T PRK11447 37 LGEATHREDLVRQSLYRLELID--PNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLA-PDSNAYRSSRTTMLLSTPEGR 113 (1157)
T ss_pred HHHhhCChHHHHHHHHHHHccC--CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHhcCCchh
Confidence 4444455566999999998764 5578889999999999999999999999999886 3343332
Q ss_pred --HHHHHHHHccCChHHHHHHHHHHHhcCCcchh-hHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 007461 156 --SRLVASCVRARKFKIANTLLQVFITDGEIALL-AFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYY 232 (603)
Q Consensus 156 --~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 232 (603)
..+.+.+...|++++|.+.|+.+....+++.. ............|+.++|++.++++.+.... +...+..+...+.
T Consensus 114 ~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~-~~~~~~~LA~ll~ 192 (1157)
T PRK11447 114 QALQQARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPG-NTGLRNTLALLLF 192 (1157)
T ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 23344678899999999999999988776543 2112222223468999999999999987533 6677889999999
Q ss_pred HcCCHHHHHHHHHHHHhCCCC----------------CCCccHHHH----------------------------------
Q 007461 233 KIGDSEKVAALFLECKSRKLD----------------STPFSTHMY---------------------------------- 262 (603)
Q Consensus 233 ~~g~~~~a~~~~~~~~~~~~~----------------~~~~~~~~~---------------------------------- 262 (603)
..|+.++|.+.++++...... ..+.....+
T Consensus 193 ~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~ 272 (1157)
T PRK11447 193 SSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRA 272 (1157)
T ss_pred ccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHH
Confidence 999999999999987543210 000000000
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCC-CHHHH--------
Q 007461 263 KILCDSLGKSGRAFEALKFFRDMKEKGILE-DPSIYASLICSFASITEVKLAEELFKEAEEKGMLR-DPEVC-------- 332 (603)
Q Consensus 263 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~-------- 332 (603)
......+...|++++|+..|++.++. .| +...+..+..++.+.|+.++|...|+++.+..... ....+
T Consensus 273 ~~~G~~~~~~g~~~~A~~~l~~aL~~--~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~ 350 (1157)
T PRK11447 273 RAQGLAAVDSGQGGKAIPELQQAVRA--NPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNR 350 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhh
Confidence 12244567789999999999999886 34 67888899999999999999999999998865322 11111
Q ss_pred ----HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH---
Q 007461 333 ----LKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASI--- 405 (603)
Q Consensus 333 ----~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l--- 405 (603)
......+.+.|++++|.+.|+++.+..+ .+...+..+...+...|++++|++.|++..+.. +.+...+..+
T Consensus 351 ~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l 428 (1157)
T PRK11447 351 YWLLIQQGDAALKANNLAQAERLYQQARQVDN-TDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANL 428 (1157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 2234567889999999999999998876 355677888999999999999999999988753 1222222222
Q ss_pred ---------------------------------------HHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHc
Q 007461 406 ---------------------------------------INAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGK 446 (603)
Q Consensus 406 ---------------------------------------l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 446 (603)
...+...|++++|.+.|++..+.. +.+...+..+...|.+
T Consensus 429 ~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~ 507 (1157)
T PRK11447 429 YRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQ 507 (1157)
T ss_pred HHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 223445788888888888888764 4456777888888888
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhC----------------------------
Q 007461 447 TGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEMERR---------------------------- 498 (603)
Q Consensus 447 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---------------------------- 498 (603)
.|++++|...++++.+.. +.+...+..+...+...++.++|...++.+...
T Consensus 508 ~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~ 586 (1157)
T PRK11447 508 AGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDS 586 (1157)
T ss_pred cCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHC
Confidence 999999999998887642 223333332222333344444444433322110
Q ss_pred -----------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 007461 499 -----------KVTPDKVSYTTVISAYNRAREFDMCVKFYNEFRMNGGVIDRAIAGIMVGVFSKLSQIEELVKLLQDMKS 567 (603)
Q Consensus 499 -----------~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 567 (603)
..+++...+..+...+.+.|++++|++.|+++.+.... +...+..++..|...|++++|++.++...+
T Consensus 587 G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~-~~~a~~~la~~~~~~g~~~eA~~~l~~ll~ 665 (1157)
T PRK11447 587 GKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPG-NADARLGLIEVDIAQGDLAAARAQLAKLPA 665 (1157)
T ss_pred CCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 11234445667777888889999999999998886443 567788888899999999999999998875
Q ss_pred CCCCCCHHHHHHHHHHHHhcCcHHHHHHHHhhcc
Q 007461 568 EGTKLDERLYHSAMNALRDAGLQMQAQWLQQNFE 601 (603)
Q Consensus 568 ~g~~~~~~~~~~ll~a~~~~g~~~~a~~~~~~~~ 601 (603)
.. +.+...+..+..++...|++++|.++++++.
T Consensus 666 ~~-p~~~~~~~~la~~~~~~g~~~eA~~~~~~al 698 (1157)
T PRK11447 666 TA-NDSLNTQRRVALAWAALGDTAAAQRTFNRLI 698 (1157)
T ss_pred cC-CCChHHHHHHHHHHHhCCCHHHHHHHHHHHh
Confidence 42 2345566677778888999999999888764
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.92 E-value=8.3e-22 Score=186.79 Aligned_cols=429 Identities=12% Similarity=0.100 Sum_probs=211.0
Q ss_pred hHHHHHHhcCCCChHHHHHHHHHHhhCCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 007461 84 DSFLHGMLKDPQTQELAYDYYNEAKKLPEFRPEKSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCV 163 (603)
Q Consensus 84 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 163 (603)
..+...+.+.+++.+ |.+......+.. +.+....-.+-..+.+..+.+....--....+.. +.-..+|..+.+.+.
T Consensus 52 l~lah~~yq~gd~~~-a~~h~nmv~~~d--~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~k 127 (966)
T KOG4626|consen 52 LELAHRLYQGGDYKQ-AEKHCNMVGQED--PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILK 127 (966)
T ss_pred HHHHHHHHhccCHHH-HHHHHhHhhccC--CCcccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHH
Confidence 344455555555555 666555554432 2222333333344444445554444333333332 344556666666666
Q ss_pred ccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhH-HHHHHHHHHcCCHHHHHH
Q 007461 164 RARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCY-CQIMEAYYKIGDSEKVAA 242 (603)
Q Consensus 164 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~-~~ll~~~~~~g~~~~a~~ 242 (603)
..|++++|+..++.+.+..+....+|..+..++...|+.+.|.+.|.+.++. .|+.... +.+...+-..|++++|..
T Consensus 128 erg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~ 205 (966)
T KOG4626|consen 128 ERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKA 205 (966)
T ss_pred HhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHH
Confidence 6666666666666666666666666666666666666666666666666553 3433322 223333344566666666
Q ss_pred HHHHHHhCCCCCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 007461 243 LFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEKGILED-PSIYASLICSFASITEVKLAEELFKEAE 321 (603)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 321 (603)
.|.+..+..+.. ..+|..|...+..+|+...|+.-|++.... .|+ ...|..|...|...+.+++|...+..+.
T Consensus 206 cYlkAi~~qp~f----AiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl 279 (966)
T KOG4626|consen 206 CYLKAIETQPCF----AIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRAL 279 (966)
T ss_pred HHHHHHhhCCce----eeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHH
Confidence 665555444322 235666666666666666666666665543 333 2355555555555555565555555554
Q ss_pred HcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 007461 322 EKGMLRDPEVCLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQVT 401 (603)
Q Consensus 322 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~ 401 (603)
... +....++..+...|..+|.+|.|++.+++..+..+.. ...|+.|..++-..|++.+|++.|.+..... +--..+
T Consensus 280 ~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F-~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hada 356 (966)
T KOG4626|consen 280 NLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNF-PDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADA 356 (966)
T ss_pred hcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCc-hHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHH
Confidence 432 1133444455555555555555555555555544321 2234444444444455555554444444321 111233
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCC-HhHHHHHHHHHH
Q 007461 402 YASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPN-VWIYNSLMDMHG 480 (603)
Q Consensus 402 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~ 480 (603)
.+.+...+...|.+++|..+|....+-. +.-...++.|...|-+.|++++|+..+++.+. +.|+ ...|+.+...|-
T Consensus 357 m~NLgni~~E~~~~e~A~~ly~~al~v~-p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~k 433 (966)
T KOG4626|consen 357 MNNLGNIYREQGKIEEATRLYLKALEVF-PEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYK 433 (966)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHhhC-hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHH
Confidence 4444444444444444444444444331 22233444444444444444444444444443 2333 233444444444
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007461 481 RAKNLRQVEKLWKEMERRKVTPDK-VSYTTVISAYNRAREFDMCVKFYNEFRM 532 (603)
Q Consensus 481 ~~g~~~~a~~~~~~m~~~~~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~ 532 (603)
..|+.+.|.+.+.+.+. +.|.. ..++.|...|-..|++.+|+.-+++..+
T Consensus 434 e~g~v~~A~q~y~rAI~--~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLk 484 (966)
T KOG4626|consen 434 EMGDVSAAIQCYTRAIQ--INPTFAEAHSNLASIYKDSGNIPEAIQSYRTALK 484 (966)
T ss_pred HhhhHHHHHHHHHHHHh--cCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc
Confidence 44444444444444442 22322 2344444444444444444444444444
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.2e-19 Score=189.70 Aligned_cols=495 Identities=9% Similarity=-0.014 Sum_probs=328.9
Q ss_pred hhHHHHHH-hcC-CCChHHHHHHHHHHhhCCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 007461 83 FDSFLHGM-LKD-PQTQELAYDYYNEAKKLPEFRPEKSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVA 160 (603)
Q Consensus 83 ~~~~l~~~-~~~-~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 160 (603)
+..++.+. ... |+..+ |+..|+.+.+.. +-+..++..|...|.+.|+.++|+..+++..+.. +.|...+..+ .
T Consensus 45 ~~~f~~a~~~~~~Gd~~~-A~~~l~~Al~~d--P~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ld-P~n~~~~~~L-a 119 (987)
T PRK09782 45 YPRLDKALKAQKNNDEAT-AIREFEYIHQQV--PDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRH-PGDARLERSL-A 119 (987)
T ss_pred HHHHHHHHHHHhCCCHHH-HHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-cccHHHHHHH-H
Confidence 33444443 333 56654 999999999864 4567788999999999999999999999999875 3344444444 3
Q ss_pred HHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhh--------hhhcCcHHHHHHHHHHHHhCCCCCChhhHHHH-HHHH
Q 007461 161 SCVRARKFKIANTLLQVFITDGEIALLAFNSAMGG--------YNKLHMYYSTILVYEKMKSAGIVLDSGCYCQI-MEAY 231 (603)
Q Consensus 161 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~--------~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l-l~~~ 231 (603)
.+ +++++|..+++++....|.+..++..+... |.+.+...++++ .......|+..+.... ...|
T Consensus 120 ~i---~~~~kA~~~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~----lr~~~~~~~~~vL~L~~~rlY 192 (987)
T PRK09782 120 AI---PVEVKSVTTVEELLAQQKACDAVPTLRCRSEVGQNALRLAQLPVARAQLN----DATFAASPEGKTLRTDLLQRA 192 (987)
T ss_pred Hh---ccChhHHHHHHHHHHhCCCChhHHHHHHHHhhccchhhhhhHHHHHHHHH----HhhhCCCCCcHHHHHHHHHHH
Confidence 33 888899999999999988887777777776 666644444444 2222234445544444 7888
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCC---------------------------ccHHHHHHHHHHHhccCCHHHHHHHHHH
Q 007461 232 YKIGDSEKVAALFLECKSRKLDSTP---------------------------FSTHMYKILCDSLGKSGRAFEALKFFRD 284 (603)
Q Consensus 232 ~~~g~~~~a~~~~~~~~~~~~~~~~---------------------------~~~~~~~~li~~~~~~g~~~~A~~~~~~ 284 (603)
.+.|++++|+++++++.+.++.... .+...+..++..|.+.|+.++|.+++++
T Consensus 193 ~~l~dw~~Ai~lL~~L~k~~pl~~~~~~~L~~ay~q~l~~~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~ 272 (987)
T PRK09782 193 IYLKQWSQADTLYNEARQQNTLSAAERRQWFDVLLAGQLDDRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIE 272 (987)
T ss_pred HHHhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhCHHHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 8888888888888777654432211 2344566777777788888888877777
Q ss_pred HHHCCCC-CCHHHHHHH------------------------------HHHHHc---------------------------
Q 007461 285 MKEKGIL-EDPSIYASL------------------------------ICSFAS--------------------------- 306 (603)
Q Consensus 285 m~~~g~~-p~~~~~~~l------------------------------l~~~~~--------------------------- 306 (603)
+...-.. |+..++..+ +..+.+
T Consensus 273 ~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 352 (987)
T PRK09782 273 NKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVS 352 (987)
T ss_pred CcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhc
Confidence 6432111 111111100 111112
Q ss_pred ------------------------------------cCCHHHHHHHHHHHHHc-C-CCCCHHHHHHHHHHHHHcCC---H
Q 007461 307 ------------------------------------ITEVKLAEELFKEAEEK-G-MLRDPEVCLKLVLMYIEEGL---V 345 (603)
Q Consensus 307 ------------------------------------~g~~~~a~~~~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~---~ 345 (603)
.|+.++|.++++..... + ...+......++..|.+.+. .
T Consensus 353 ~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 432 (987)
T PRK09782 353 VATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATP 432 (987)
T ss_pred cccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccch
Confidence 22333333333333321 0 11123333345555555444 1
Q ss_pred HHHHHH----------------------HH---HHHhCCCCC--CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 007461 346 EKTLDV----------------------VE---SMKNAKLKI--SDCISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPG 398 (603)
Q Consensus 346 ~~a~~~----------------------~~---~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~ 398 (603)
.++..+ .+ ...... ++ +...|..+..++.. ++.++|+..+.+..... |+
T Consensus 433 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~-p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd 508 (987)
T PRK09782 433 AKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDM-SPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PD 508 (987)
T ss_pred HHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccC-CCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--Cc
Confidence 122111 11 111111 12 44456666666665 77888888777776643 66
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHH
Q 007461 399 QVTYASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDM 478 (603)
Q Consensus 399 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 478 (603)
......+...+...|++++|...|+++... +|+...+..+...+.+.|++++|...+++..+.. +.+...+..+...
T Consensus 509 ~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~ 585 (987)
T PRK09782 509 AWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQ 585 (987)
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHH
Confidence 554444455557899999999999987654 4445556777788899999999999999998763 2233333344444
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHH
Q 007461 479 HGRAKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNRAREFDMCVKFYNEFRMNGGVIDRAIAGIMVGVFSKLSQIEEL 558 (603)
Q Consensus 479 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 558 (603)
....|++++|...+++.++. .|+...+..+..++.+.|++++|+..+++.....+. +...+..+...+...|++++|
T Consensus 586 l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd-~~~a~~nLG~aL~~~G~~eeA 662 (987)
T PRK09782 586 RYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALELEPN-NSNYQAALGYALWDSGDIAQS 662 (987)
T ss_pred HHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHH
Confidence 55669999999999999854 577788999999999999999999999999987544 567788888899999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHhhc
Q 007461 559 VKLLQDMKSEGTKLDERLYHSAMNALRDAGLQMQAQWLQQNF 600 (603)
Q Consensus 559 ~~~~~~m~~~g~~~~~~~~~~ll~a~~~~g~~~~a~~~~~~~ 600 (603)
++.+++..+.. +-+...+..+..++...|+.++|+..+++.
T Consensus 663 i~~l~~AL~l~-P~~~~a~~nLA~al~~lGd~~eA~~~l~~A 703 (987)
T PRK09782 663 REMLERAHKGL-PDDPALIRQLAYVNQRLDDMAATQHYARLV 703 (987)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 99999998753 345678888899999999999999998875
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.8e-21 Score=184.59 Aligned_cols=430 Identities=14% Similarity=0.120 Sum_probs=301.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhc
Q 007461 120 LKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKL 199 (603)
Q Consensus 120 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 199 (603)
...|.+-..+.|++.+|++.....-..+ +.+......+-..+.+..+++....--....+..+.-.++|..+...+-..
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~ker 129 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKER 129 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHh
Confidence 4455666667788888877766554443 333333334444566666666655544445555566677788888888888
Q ss_pred CcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccCCHHHHH
Q 007461 200 HMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEAL 279 (603)
Q Consensus 200 ~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 279 (603)
|++++|+.+++.+++.... ....|..+..++...|+.+.|.+.|.+..+.++... -....+...+-..|+.++|.
T Consensus 130 g~~~~al~~y~~aiel~p~-fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~----ca~s~lgnLlka~Grl~ea~ 204 (966)
T KOG4626|consen 130 GQLQDALALYRAAIELKPK-FIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLY----CARSDLGNLLKAEGRLEEAK 204 (966)
T ss_pred chHHHHHHHHHHHHhcCch-hhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchh----hhhcchhHHHHhhcccchhH
Confidence 8888888888888775432 566777888888888888888888877776655321 13344555556678888888
Q ss_pred HHHHHHHHCCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 007461 280 KFFRDMKEKGILED-PSIYASLICSFASITEVKLAEELFKEAEEKGMLRDPEVCLKLVLMYIEEGLVEKTLDVVESMKNA 358 (603)
Q Consensus 280 ~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 358 (603)
..|.+.++. .|. ...|..|...+-..|++..|.+.|+++++... .-...|-.|...|...+.++.|...+.+....
T Consensus 205 ~cYlkAi~~--qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP-~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l 281 (966)
T KOG4626|consen 205 ACYLKAIET--QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDP-NFLDAYINLGNVYKEARIFDRAVSCYLRALNL 281 (966)
T ss_pred HHHHHHHhh--CCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCC-cchHHHhhHHHHHHHHhcchHHHHHHHHHHhc
Confidence 888777765 343 35677777777778888888888888776531 12456777788888888888888887777665
Q ss_pred CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhH
Q 007461 359 KLKISDCISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPG-QVTYASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAY 437 (603)
Q Consensus 359 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 437 (603)
.+ ....++..+...|-.+|..+-|+..|++..+.. |+ ...|+.+..++-..|++.+|.+.+....... +......
T Consensus 282 rp-n~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~--P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam 357 (966)
T KOG4626|consen 282 RP-NHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ--PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAM 357 (966)
T ss_pred CC-cchhhccceEEEEeccccHHHHHHHHHHHHhcC--CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHH
Confidence 54 345567777777778888888888888877643 33 3577888888888888888888888877764 4456677
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHcCCCCC-HhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHH
Q 007461 438 SSMVAMYGKTGRIRDAMWLVAKMKAKGCEPN-VWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDK-VSYTTVISAYN 515 (603)
Q Consensus 438 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~-~~~~~li~~~~ 515 (603)
+.|...|...|.+++|..+|....+. .|. ...++.|...|-+.|++++|+..|++.+ .+.|+. ..|+.+...|-
T Consensus 358 ~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal--rI~P~fAda~~NmGnt~k 433 (966)
T KOG4626|consen 358 NNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL--RIKPTFADALSNMGNTYK 433 (966)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH--hcCchHHHHHHhcchHHH
Confidence 78888888888888888888877763 443 4567777788888888888888888877 456765 46778888888
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 007461 516 RAREFDMCVKFYNEFRMNGGVIDR-AIAGIMVGVFSKLSQIEELVKLLQDMKSE 568 (603)
Q Consensus 516 ~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 568 (603)
..|+.+.|...+.+.+.- .|.. ...+.|...|-..|++.+|+.-+++.++.
T Consensus 434 e~g~v~~A~q~y~rAI~~--nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLkl 485 (966)
T KOG4626|consen 434 EMGDVSAAIQCYTRAIQI--NPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKL 485 (966)
T ss_pred HhhhHHHHHHHHHHHHhc--CcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHcc
Confidence 888888888888877764 3332 45677777888888888888888877753
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.91 E-value=9.6e-19 Score=183.88 Aligned_cols=431 Identities=11% Similarity=0.014 Sum_probs=299.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhh
Q 007461 119 TLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNK 198 (603)
Q Consensus 119 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 198 (603)
.+......+.+.|++++|+..|++.++. .|+...|..+..+|.+.|++++|+..++...+.++.+..+|..+..+|..
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 4556778889999999999999998865 47888888888999999999999999999999988899999999999999
Q ss_pred cCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccCCHHHH
Q 007461 199 LHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEA 278 (603)
Q Consensus 199 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 278 (603)
.|++++|+..|......+.. +......++..+.. ..+...............+ .+..+.. |....+....
T Consensus 207 lg~~~eA~~~~~~~~~~~~~-~~~~~~~~~~~~l~----~~a~~~~~~~l~~~~~~~~----~~~~~~~-~~~~~~~~~~ 276 (615)
T TIGR00990 207 LGKYADALLDLTASCIIDGF-RNEQSAQAVERLLK----KFAESKAKEILETKPENLP----SVTFVGN-YLQSFRPKPR 276 (615)
T ss_pred cCCHHHHHHHHHHHHHhCCC-ccHHHHHHHHHHHH----HHHHHHHHHHHhcCCCCCC----CHHHHHH-HHHHccCCcc
Confidence 99999999988766554321 11112222222222 1222222222222222111 2332222 2221112222
Q ss_pred HHHHHHHHHCCCCCCH-HHHHHHHHH---HHccCCHHHHHHHHHHHHHcC-C-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 007461 279 LKFFRDMKEKGILEDP-SIYASLICS---FASITEVKLAEELFKEAEEKG-M-LRDPEVCLKLVLMYIEEGLVEKTLDVV 352 (603)
Q Consensus 279 ~~~~~~m~~~g~~p~~-~~~~~ll~~---~~~~g~~~~a~~~~~~~~~~~-~-~~~~~~~~~l~~~~~~~g~~~~a~~~~ 352 (603)
..-+.+-.+ ..++. ..+..+... ....+++++|.+.++.+.+.+ . +.....+..+...+...|++++|...|
T Consensus 277 ~~~~~~~~~--~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~ 354 (615)
T TIGR00990 277 PAGLEDSNE--LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADL 354 (615)
T ss_pred hhhhhcccc--cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 211211111 11110 111111111 123467888999999888765 2 234567778888888999999999999
Q ss_pred HHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCc
Q 007461 353 ESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQKGFDK 432 (603)
Q Consensus 353 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 432 (603)
++..+.++. ....|..+...+...|++++|+..|++..+.. +.+...+..+...+...|++++|...|++..+.. +.
T Consensus 355 ~kal~l~P~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~ 431 (615)
T TIGR00990 355 SKSIELDPR-VTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PD 431 (615)
T ss_pred HHHHHcCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-cc
Confidence 998877653 45577888888889999999999999887764 3456778888888899999999999999988875 55
Q ss_pred CHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH------H
Q 007461 433 CVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDKV------S 506 (603)
Q Consensus 433 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~------~ 506 (603)
+...+..+...+.+.|++++|+..|++..+. .+.+...|+.+...+...|++++|++.|++..+.....+.. .
T Consensus 432 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~-~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l 510 (615)
T TIGR00990 432 FIFSHIQLGVTQYKEGSIASSMATFRRCKKN-FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPL 510 (615)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHH
Confidence 6777888888899999999999999988875 23457788888889999999999999999987543211111 1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 007461 507 YTTVISAYNRAREFDMCVKFYNEFRMNGGVIDRAIAGIMVGVFSKLSQIEELVKLLQDMKSE 568 (603)
Q Consensus 507 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 568 (603)
++..+..+...|++++|.+++++....+.. +...+..+...+.+.|++++|++.|++..+.
T Consensus 511 ~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~-~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 511 INKALALFQWKQDFIEAENLCEKALIIDPE-CDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 222223344568999999999998876432 3456788899999999999999999988765
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.2e-20 Score=188.43 Aligned_cols=301 Identities=10% Similarity=0.044 Sum_probs=125.6
Q ss_pred hhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccCCHH
Q 007461 197 NKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAF 276 (603)
Q Consensus 197 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 276 (603)
...|++++|+..|+++.+.+. .+..++..+...+.+.|++++|..+++.+......+.......+..++..|.+.|+++
T Consensus 46 ~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~ 124 (389)
T PRK11788 46 LLNEQPDKAIDLFIEMLKVDP-ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLD 124 (389)
T ss_pred HhcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHH
Confidence 344444445555554444321 1233444444444445555555554444443221111111123444444555555555
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHHcCCHHHHHHHH
Q 007461 277 EALKFFRDMKEKGILEDPSIYASLICSFASITEVKLAEELFKEAEEKGMLRD----PEVCLKLVLMYIEEGLVEKTLDVV 352 (603)
Q Consensus 277 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~ 352 (603)
+|.++|+++.+.. .++..++..++..+...|++++|.+.++.+.+.+..+. ...+..+...+.+.|++++|.+.|
T Consensus 125 ~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 203 (389)
T PRK11788 125 RAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALL 203 (389)
T ss_pred HHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 5555555544331 12333444444444444444444444444443321111 112223333444444444444444
Q ss_pred HHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCc
Q 007461 353 ESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQKGFDK 432 (603)
Q Consensus 353 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 432 (603)
+++.+..+. +...+..+...+ .+.|++++|.++++++.+.+...
T Consensus 204 ~~al~~~p~-~~~~~~~la~~~-----------------------------------~~~g~~~~A~~~~~~~~~~~p~~ 247 (389)
T PRK11788 204 KKALAADPQ-CVRASILLGDLA-----------------------------------LAQGDYAAAIEALERVEEQDPEY 247 (389)
T ss_pred HHHHhHCcC-CHHHHHHHHHHH-----------------------------------HHCCCHHHHHHHHHHHHHHChhh
Confidence 444433221 222333344444 44444444444444444332111
Q ss_pred CHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 007461 433 CVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDKVSYTTVIS 512 (603)
Q Consensus 433 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 512 (603)
...+++.++.+|.+.|++++|...++++.+. .|+...+..+...+.+.|++++|..+++++.+. .|+..+++.++.
T Consensus 248 ~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~ 323 (389)
T PRK11788 248 LSEVLPKLMECYQALGDEAEGLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLD 323 (389)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHH
Confidence 1233444444444444444444444444443 233333344444444445555555554444432 344444444444
Q ss_pred HHHh---cCCHHHHHHHHHHHHHCCCCCCH
Q 007461 513 AYNR---AREFDMCVKFYNEFRMNGGVIDR 539 (603)
Q Consensus 513 ~~~~---~g~~~~a~~~~~~~~~~~~~~~~ 539 (603)
.+.. .|+.+++..+++++.+.++.|++
T Consensus 324 ~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p 353 (389)
T PRK11788 324 YHLAEAEEGRAKESLLLLRDLVGEQLKRKP 353 (389)
T ss_pred HhhhccCCccchhHHHHHHHHHHHHHhCCC
Confidence 3332 23444444444444444443333
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.9e-20 Score=187.06 Aligned_cols=298 Identities=10% Similarity=0.084 Sum_probs=160.6
Q ss_pred HccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCC---hhhHHHHHHHHHHcCCHHH
Q 007461 163 VRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLD---SGCYCQIMEAYYKIGDSEK 239 (603)
Q Consensus 163 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~---~~~~~~ll~~~~~~g~~~~ 239 (603)
...|++++|...|+++.+.++.+..++..+...+...|++++|..+++.+.+.+..++ ..++..+...|.+.|++++
T Consensus 46 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~ 125 (389)
T PRK11788 46 LLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDR 125 (389)
T ss_pred HhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHH
Confidence 3445555555555555555444555555555555555555555555555554321111 1344555666666666666
Q ss_pred HHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHccCCHHHHHH
Q 007461 240 VAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEKGILEDP----SIYASLICSFASITEVKLAEE 315 (603)
Q Consensus 240 a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~ll~~~~~~g~~~~a~~ 315 (603)
|..+|+++.+... .+..+++.++..+.+.|++++|.+.++.+.+.+..+.. ..+..+...+...|++++|..
T Consensus 126 A~~~~~~~l~~~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 201 (389)
T PRK11788 126 AEELFLQLVDEGD----FAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARA 201 (389)
T ss_pred HHHHHHHHHcCCc----chHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 6666666654322 12345666666666666666666666666554322211 123445555566667777777
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 007461 316 LFKEAEEKGMLRDPEVCLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLISQGC 395 (603)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~ 395 (603)
.++++.+.. +.+...+..+...|.+.|++++|.++++++.+.++.....+++.++.+|.+.|++++|...++++.+..
T Consensus 202 ~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~- 279 (389)
T PRK11788 202 LLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEY- 279 (389)
T ss_pred HHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 776666543 223455666667777777777777777777655432223345555555555566666665555555432
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHc---cCCHHHHHHHHHHHHHcCCCCCH
Q 007461 396 IPGQVTYASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGK---TGRIRDAMWLVAKMKAKGCEPNV 469 (603)
Q Consensus 396 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~~~~p~~ 469 (603)
|+...+..+...+.+.|++++|..+++++.+. .|+...++.++..+.. .|+.+++..++++|.++++.|++
T Consensus 280 -p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p 353 (389)
T PRK11788 280 -PGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKP 353 (389)
T ss_pred -CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCC
Confidence 34344455555555555555555555555543 3444455555544443 33555555555555554444443
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.6e-18 Score=178.10 Aligned_cols=427 Identities=10% Similarity=-0.014 Sum_probs=306.6
Q ss_pred hHHHHHHhcCCCChHHHHHHHHHHhhCCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 007461 84 DSFLHGMLKDPQTQELAYDYYNEAKKLPEFRPEKSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCV 163 (603)
Q Consensus 84 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 163 (603)
...-..+.+.+++.+ |+..|+.+++. .|+...|..+..+|.+.|++++|+..++...+.+ +.+..+|..+..++.
T Consensus 131 k~~G~~~~~~~~~~~-Ai~~y~~al~~---~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~ 205 (615)
T TIGR00990 131 KEKGNKAYRNKDFNK-AIKLYSKAIEC---KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHcCCHHH-HHHHHHHHHhc---CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 344555667788876 99999999875 5788899999999999999999999999999876 556788999999999
Q ss_pred ccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCHHHHHHH
Q 007461 164 RARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAAL 243 (603)
Q Consensus 164 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~ 243 (603)
..|++++|+.-|..+...++.+......++..+... .+........+.. .++...+..+.. |......+....-
T Consensus 206 ~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~----~a~~~~~~~l~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~ 279 (615)
T TIGR00990 206 GLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKK----FAESKAKEILETK-PENLPSVTFVGN-YLQSFRPKPRPAG 279 (615)
T ss_pred HcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHH----HHHHHHHHHHhcC-CCCCCCHHHHHH-HHHHccCCcchhh
Confidence 999999999988877665543332222222222221 2222222332321 122223333332 2222222222111
Q ss_pred HHHHHhCCCCCCCccHHHHHHHHHHH---hccCCHHHHHHHHHHHHHCC-CCC-CHHHHHHHHHHHHccCCHHHHHHHHH
Q 007461 244 FLECKSRKLDSTPFSTHMYKILCDSL---GKSGRAFEALKFFRDMKEKG-ILE-DPSIYASLICSFASITEVKLAEELFK 318 (603)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~li~~~---~~~g~~~~A~~~~~~m~~~g-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~ 318 (603)
++...+..... ...+..+...+ ...+++++|++.|+...+.+ ..| +...+..+...+...|++++|...++
T Consensus 280 ~~~~~~~~~~~----~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~ 355 (615)
T TIGR00990 280 LEDSNELDEET----GNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLS 355 (615)
T ss_pred hhccccccccc----ccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 22111111110 01122221111 33578999999999998764 234 34567777788889999999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 007461 319 EAEEKGMLRDPEVCLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPG 398 (603)
Q Consensus 319 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~ 398 (603)
...+.. +.+...|..+...+...|++++|...|+...+.++ .+..+|..+...+...|++++|+..|++..+.. +.+
T Consensus 356 kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~ 432 (615)
T TIGR00990 356 KSIELD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNS-EDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDF 432 (615)
T ss_pred HHHHcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccC
Confidence 998864 23467888899999999999999999999988765 356788899999999999999999999998864 345
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCH--------h
Q 007461 399 QVTYASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNV--------W 470 (603)
Q Consensus 399 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~--------~ 470 (603)
...+..+...+.+.|++++|...|++..+.. +.+...|+.+...+...|++++|.+.|++..+. .|+. .
T Consensus 433 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l--~p~~~~~~~~~~~ 509 (615)
T TIGR00990 433 IFSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL--EKETKPMYMNVLP 509 (615)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc--CCccccccccHHH
Confidence 6677788888999999999999999998764 556888999999999999999999999998875 2321 1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 007461 471 IYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDK-VSYTTVISAYNRAREFDMCVKFYNEFRMN 533 (603)
Q Consensus 471 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 533 (603)
.++.....+...|++++|.+++++..+.. |+. ..+..+...+...|++++|++.|++..+.
T Consensus 510 l~~~a~~~~~~~~~~~eA~~~~~kAl~l~--p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 510 LINKALALFQWKQDFIEAENLCEKALIID--PECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 12222333445799999999999988653 444 56889999999999999999999998775
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=8.4e-17 Score=172.24 Aligned_cols=430 Identities=10% Similarity=-0.004 Sum_probs=299.4
Q ss_pred HHHHHHH-HHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhh-cCcHHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 007461 152 AHTCSRL-VASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNK-LHMYYSTILVYEKMKSAGIVLDSGCYCQIME 229 (603)
Q Consensus 152 ~~~~~~l-l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 229 (603)
..+.... .+.|.+.+++++|++++.++.+.++.+......|..+|.. .++ +++..++.. .+.-+...+..+..
T Consensus 181 ~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~pl~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~ 255 (987)
T PRK09782 181 GKTLRTDLLQRAIYLKQWSQADTLYNEARQQNTLSAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYAT 255 (987)
T ss_pred cHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHH
Confidence 4433333 6677777888888888888888777777767777777776 355 666666443 22346777888888
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCC-CCCc---------------------------------------------------
Q 007461 230 AYYKIGDSEKVAALFLECKSRKLD-STPF--------------------------------------------------- 257 (603)
Q Consensus 230 ~~~~~g~~~~a~~~~~~~~~~~~~-~~~~--------------------------------------------------- 257 (603)
.|.+.|+.++|.++++++...... +.+.
T Consensus 256 ~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (987)
T PRK09782 256 ALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKL 335 (987)
T ss_pred HHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 889999999999888876543222 1000
Q ss_pred ---------------------------------------cHHHHHHHHHHHhccCCHHHHHHHHHHHHHC--CCCCCHHH
Q 007461 258 ---------------------------------------STHMYKILCDSLGKSGRAFEALKFFRDMKEK--GILEDPSI 296 (603)
Q Consensus 258 ---------------------------------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~~ 296 (603)
+.....-+.-...+.|+.++|.++|+..... ...++...
T Consensus 336 ~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l 415 (987)
T PRK09782 336 LATLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTL 415 (987)
T ss_pred hcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHH
Confidence 0000000111123455666666666665442 11223334
Q ss_pred HHHHHHHHHccCC---HHHHHHH----------------------HHHHHHc-CC-CC--CHHHHHHHHHHHHHcCCHHH
Q 007461 297 YASLICSFASITE---VKLAEEL----------------------FKEAEEK-GM-LR--DPEVCLKLVLMYIEEGLVEK 347 (603)
Q Consensus 297 ~~~ll~~~~~~g~---~~~a~~~----------------------~~~~~~~-~~-~~--~~~~~~~l~~~~~~~g~~~~ 347 (603)
..-++..+.+.+. ...+..+ ....... +. ++ +...+..+..++.. |+.++
T Consensus 416 ~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~e 494 (987)
T PRK09782 416 MARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGV 494 (987)
T ss_pred HHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHH
Confidence 4467777776655 3333222 1111111 11 33 67788888888877 89999
Q ss_pred HHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 007461 348 TLDVVESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQ 427 (603)
Q Consensus 348 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 427 (603)
|...+.+.....+ +......+...+...|++++|+..|+++... +|+...+..+..++.+.|+.++|...++...+
T Consensus 495 Ai~a~~~Al~~~P--d~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~ 570 (987)
T PRK09782 495 ALYAWLQAEQRQP--DAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQ 570 (987)
T ss_pred HHHHHHHHHHhCC--chHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 9998888776653 4433334455557899999999999997654 45555566777888999999999999999988
Q ss_pred cCCCcCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHH
Q 007461 428 KGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPD-KVS 506 (603)
Q Consensus 428 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~ 506 (603)
.. +.+...+..+...+.+.|++++|...+++..+. .|+...|..+..++.+.|+.++|+..+++.... .|+ ...
T Consensus 571 l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l--~Pd~~~a 645 (987)
T PRK09782 571 RG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALEL--EPNNSNY 645 (987)
T ss_pred cC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHH
Confidence 75 334444444445555679999999999999985 678889999999999999999999999999965 454 466
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHH
Q 007461 507 YTTVISAYNRAREFDMCVKFYNEFRMNGGVIDRAIAGIMVGVFSKLSQIEELVKLLQDMKSEGTKLDE-RLYHSAMNALR 585 (603)
Q Consensus 507 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~-~~~~~ll~a~~ 585 (603)
++.+..++...|++++|+..+++..+..+. +...+..+..++...|++++|+..+++..+. .|+. .+.........
T Consensus 646 ~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~-~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l--~P~~a~i~~~~g~~~~ 722 (987)
T PRK09782 646 QAALGYALWDSGDIAQSREMLERAHKGLPD-DPALIRQLAYVNQRLDDMAATQHYARLVIDD--IDNQALITPLTPEQNQ 722 (987)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCchhhhhhhHHHH
Confidence 888888999999999999999999986543 6678889999999999999999999999965 4554 44445555566
Q ss_pred hcCcHHHHHHHHhh
Q 007461 586 DAGLQMQAQWLQQN 599 (603)
Q Consensus 586 ~~g~~~~a~~~~~~ 599 (603)
...+++.+.+-+++
T Consensus 723 ~~~~~~~a~~~~~r 736 (987)
T PRK09782 723 QRFNFRRLHEEVGR 736 (987)
T ss_pred HHHHHHHHHHHHHH
Confidence 66667777665544
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.1e-18 Score=178.35 Aligned_cols=334 Identities=12% Similarity=0.019 Sum_probs=239.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhh
Q 007461 119 TLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNK 198 (603)
Q Consensus 119 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 198 (603)
-...++..+.+.|+++.|+.+++...... +-+...+..++.++...|+++.|...++++....|.+..++..+...+..
T Consensus 44 ~~~~~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~ 122 (656)
T PRK15174 44 NIILFAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLK 122 (656)
T ss_pred CHHHHHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 35556777788888888888888887765 34455555566666778888888888888888888888888888888888
Q ss_pred cCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccCCHHHH
Q 007461 199 LHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEA 278 (603)
Q Consensus 199 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 278 (603)
.|++++|+..+++..+... .+...+..+...+...|++++|...++.+....+.+. ..+..+ ..+...|++++|
T Consensus 123 ~g~~~~Ai~~l~~Al~l~P-~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~----~a~~~~-~~l~~~g~~~eA 196 (656)
T PRK15174 123 SKQYATVADLAEQAWLAFS-GNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRG----DMIATC-LSFLNKSRLPED 196 (656)
T ss_pred cCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCH----HHHHHH-HHHHHcCCHHHH
Confidence 8888888888888877532 2556777788888888888888888887765554331 233333 346778888888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHHH
Q 007461 279 LKFFRDMKEKGILEDPSIYASLICSFASITEVKLAEELFKEAEEKGMLRDPEVCLKLVLMYIEEGLVEK----TLDVVES 354 (603)
Q Consensus 279 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~----a~~~~~~ 354 (603)
+..++.+......++...+..+..++...|+.++|...++.+.+.. +.+...+..+...|...|++++ |...|++
T Consensus 197 ~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~ 275 (656)
T PRK15174 197 HDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRH 275 (656)
T ss_pred HHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHH
Confidence 8888887765433344455555667778888888888888887765 3356777778888888888875 6778887
Q ss_pred HHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCH
Q 007461 355 MKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQKGFDKCV 434 (603)
Q Consensus 355 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 434 (603)
..+..+. +..++..+...+.+.|++++|+..+++..... +.+...+..+..++.+.|++++|...|+.+.+.+ +.+.
T Consensus 276 Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~-P~~~ 352 (656)
T PRK15174 276 ALQFNSD-NVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLAREK-GVTS 352 (656)
T ss_pred HHhhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-ccch
Confidence 7776653 56677777788888888888888888877654 2334556666777777888888888887777653 2222
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 007461 435 VAYSSMVAMYGKTGRIRDAMWLVAKMKAK 463 (603)
Q Consensus 435 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 463 (603)
..+..+..++...|+.++|...|++..+.
T Consensus 353 ~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 353 KWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 33444556677778888888888877764
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.6e-18 Score=181.29 Aligned_cols=410 Identities=12% Similarity=0.040 Sum_probs=275.6
Q ss_pred hhHHHHHHhcCCCChHHHHHHHHHHhhCCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 007461 83 FDSFLHGMLKDPQTQELAYDYYNEAKKLPEFRPEKSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASC 162 (603)
Q Consensus 83 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 162 (603)
....+......++..+ |+++|....... +.+...+..+...+...|++++|..++++..+.. +.+...+..+...+
T Consensus 18 ~~d~~~ia~~~g~~~~-A~~~~~~~~~~~--~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l 93 (765)
T PRK10049 18 IADWLQIALWAGQDAE-VITVYNRYRVHM--QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTL 93 (765)
T ss_pred HHHHHHHHHHcCCHHH-HHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 4445566666777776 889998887532 4566678899999999999999999999988775 55677777888889
Q ss_pred HccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCHHHHHH
Q 007461 163 VRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAA 242 (603)
Q Consensus 163 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~ 242 (603)
...|++++|+..++++....|.+.. +..+..++...|++++|+..++++.+.... +...+..+..++...|..+.|.+
T Consensus 94 ~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~~e~Al~ 171 (765)
T PRK10049 94 ADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNRLSAPALG 171 (765)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCChHHHHH
Confidence 9999999999999999998887878 889999999999999999999999986433 55566777888888899999998
Q ss_pred HHHHHHhCCCCC-CCccHHHHHHHHHHHh-----ccCCH---HHHHHHHHHHHHC-CCCCCHH-HH----HHHHHHHHcc
Q 007461 243 LFLECKSRKLDS-TPFSTHMYKILCDSLG-----KSGRA---FEALKFFRDMKEK-GILEDPS-IY----ASLICSFASI 307 (603)
Q Consensus 243 ~~~~~~~~~~~~-~~~~~~~~~~li~~~~-----~~g~~---~~A~~~~~~m~~~-g~~p~~~-~~----~~ll~~~~~~ 307 (603)
.++.... .+.. ..........++.... ..+++ ++|++.++.+.+. ...|+.. .+ ...+.++...
T Consensus 172 ~l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~ 250 (765)
T PRK10049 172 AIDDANL-TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLAR 250 (765)
T ss_pred HHHhCCC-CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHh
Confidence 8876554 1110 0000001222222222 22334 6788888888754 2233221 11 1113344566
Q ss_pred CCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC---CHhhHHHHHHHHHhcCCHHHH
Q 007461 308 TEVKLAEELFKEAEEKGML-RDPEVCLKLVLMYIEEGLVEKTLDVVESMKNAKLKI---SDCISCAIVNGFSKRRGYWAA 383 (603)
Q Consensus 308 g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a 383 (603)
|+.++|...|+.+.+.+.. |+ .....+...|...|++++|+..|+.+.+.+... .......+..++.+.|++++|
T Consensus 251 g~~~eA~~~~~~ll~~~~~~P~-~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA 329 (765)
T PRK10049 251 DRYKDVISEYQRLKAEGQIIPP-WAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGA 329 (765)
T ss_pred hhHHHHHHHHHHhhccCCCCCH-HHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHH
Confidence 8888888888888776532 22 122224667888888888888888876654321 123455566677788888888
Q ss_pred HHHHHHHHHcCC-----------CCCH---HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCC
Q 007461 384 VKVYEQLISQGC-----------IPGQ---VTYASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGR 449 (603)
Q Consensus 384 ~~~~~~m~~~g~-----------~p~~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 449 (603)
+++++.+..... .|+. ..+..+...+...|+.++|.++++++.... +.+...+..+...+...|+
T Consensus 330 ~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~ 408 (765)
T PRK10049 330 LTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQARGW 408 (765)
T ss_pred HHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 888888776421 1221 233445556666777777777777776653 5556667777777777777
Q ss_pred HHHHHHHHHHHHHcCCCCC-HhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 007461 450 IRDAMWLVAKMKAKGCEPN-VWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDKV 505 (603)
Q Consensus 450 ~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 505 (603)
+++|++.+++..+. .|+ ...+..+...+...|++++|+.+++++++. .|+..
T Consensus 409 ~~~A~~~l~~al~l--~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~--~Pd~~ 461 (765)
T PRK10049 409 PRAAENELKKAEVL--EPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR--EPQDP 461 (765)
T ss_pred HHHHHHHHHHHHhh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCCCH
Confidence 77777777777664 343 445555555666677777777777777643 44443
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.9e-18 Score=178.55 Aligned_cols=333 Identities=12% Similarity=0.057 Sum_probs=275.7
Q ss_pred hhHHHHHHhcCCCChHHHHHHHHHHhhCCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 007461 83 FDSFLHGMLKDPQTQELAYDYYNEAKKLPEFRPEKSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASC 162 (603)
Q Consensus 83 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 162 (603)
.-.++..+.+.|+..+ |..+++...... +-+...+..++..+...|++++|+..++.+.+.. +.+...+..+...+
T Consensus 45 ~~~~~~~~~~~g~~~~-A~~l~~~~l~~~--p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l 120 (656)
T PRK15174 45 IILFAIACLRKDETDV-GLTLLSDRVLTA--KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVL 120 (656)
T ss_pred HHHHHHHHHhcCCcch-hHHHhHHHHHhC--CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHH
Confidence 4567788888899887 999999888753 4456667777788888999999999999999886 56778888899999
Q ss_pred HccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCHHHHHH
Q 007461 163 VRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAA 242 (603)
Q Consensus 163 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~ 242 (603)
...|++++|...+++.....+.+..++..+...+...|++++|...++.+...... +...+..+ ..+.+.|++++|..
T Consensus 121 ~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~ 198 (656)
T PRK15174 121 LKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHD 198 (656)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHH
Confidence 99999999999999999998889999999999999999999999999988776433 33334333 35788999999999
Q ss_pred HHHHHHhCCCCCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHH----HHHHHH
Q 007461 243 LFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEKGILEDPSIYASLICSFASITEVKL----AEELFK 318 (603)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~----a~~~~~ 318 (603)
.++.+........ ...+..+...+...|++++|++.|++..... ..+...+..+...+...|+.++ |...++
T Consensus 199 ~~~~~l~~~~~~~---~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~ 274 (656)
T PRK15174 199 LARALLPFFALER---QESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWR 274 (656)
T ss_pred HHHHHHhcCCCcc---hhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHH
Confidence 9999877654322 2345566788999999999999999998764 2356778888899999999885 899999
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 007461 319 EAEEKGMLRDPEVCLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPG 398 (603)
Q Consensus 319 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~ 398 (603)
.+.+.. +.+..++..+...+.+.|++++|...+++..+..+. +...+..+...+.+.|++++|+..|+++...+ |+
T Consensus 275 ~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~--P~ 350 (656)
T PRK15174 275 HALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYARALRQVGQYTAASDEFVQLAREK--GV 350 (656)
T ss_pred HHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cc
Confidence 998875 347789999999999999999999999999988764 55678888999999999999999999998764 44
Q ss_pred HH-HHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 007461 399 QV-TYASIINAYCRIALYSKAEKVFIEMQQKG 429 (603)
Q Consensus 399 ~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 429 (603)
.. .+..+..++...|+.++|...|++..+..
T Consensus 351 ~~~~~~~~a~al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 351 TSKWNRYAAAALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 43 34445677899999999999999998764
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=2e-17 Score=177.04 Aligned_cols=167 Identities=8% Similarity=0.026 Sum_probs=141.1
Q ss_pred CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHH
Q 007461 114 RPEKSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAM 193 (603)
Q Consensus 114 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 193 (603)
+.++.-..-.+......|+.++|+++++...... +.+...+..+...+.+.|++++|..++++.....|.+...+..+.
T Consensus 12 ~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la 90 (765)
T PRK10049 12 ALSNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLI 90 (765)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 4556666677888889999999999999987643 566777899999999999999999999999998888888899999
Q ss_pred hhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccC
Q 007461 194 GGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSG 273 (603)
Q Consensus 194 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 273 (603)
..+...|++++|+..+++..+... .+.. +..+..++...|+.++|...++++....+.. ...+..+...+...|
T Consensus 91 ~~l~~~g~~~eA~~~l~~~l~~~P-~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~----~~~~~~la~~l~~~~ 164 (765)
T PRK10049 91 LTLADAGQYDEALVKAKQLVSGAP-DKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQT----QQYPTEYVQALRNNR 164 (765)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCC-CCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHCC
Confidence 999999999999999999988632 2555 8888889999999999999999998876653 356777888888999
Q ss_pred CHHHHHHHHHHHHH
Q 007461 274 RAFEALKFFRDMKE 287 (603)
Q Consensus 274 ~~~~A~~~~~~m~~ 287 (603)
..++|++.++....
T Consensus 165 ~~e~Al~~l~~~~~ 178 (765)
T PRK10049 165 LSAPALGAIDDANL 178 (765)
T ss_pred ChHHHHHHHHhCCC
Confidence 99999998876653
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.5e-16 Score=162.63 Aligned_cols=453 Identities=10% Similarity=0.022 Sum_probs=271.9
Q ss_pred HhcCCCChHHHHHHHHHHhhCCCCCCCH--HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCC
Q 007461 90 MLKDPQTQELAYDYYNEAKKLPEFRPEK--STLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARK 167 (603)
Q Consensus 90 ~~~~~~~~~~a~~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 167 (603)
..++|+..+ |++.|+++.+. .|+. ..+ .++..+...|+.++|+.++++.... -+........+...+...|+
T Consensus 44 ~~r~Gd~~~-Al~~L~qaL~~---~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~ly~~~gd 117 (822)
T PRK14574 44 RARAGDTAP-VLDYLQEESKA---GPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAARAYRNEKR 117 (822)
T ss_pred HHhCCCHHH-HHHHHHHHHhh---CccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHHHHHHcCC
Confidence 345666654 78888777764 2332 233 7777777778888888888777611 12233333444556777788
Q ss_pred hHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 007461 168 FKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLEC 247 (603)
Q Consensus 168 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 247 (603)
+++|+++|+++.+..|.++..+..++..+...++.++|++.++++.+. .|+...+..++..+...++..+|.+.++++
T Consensus 118 yd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekl 195 (822)
T PRK14574 118 WDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEA 195 (822)
T ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 888888888888777777777777777777778888888877777664 344444444433443455555577777777
Q ss_pred HhCCCCCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCC
Q 007461 248 KSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEKGILEDPSIYASLICSFASITEVKLAEELFKEAEEKGMLR 327 (603)
Q Consensus 248 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 327 (603)
.+.++.. ...+..+..++.+.|-..-|+++.++-... +.+ ..+..+ . .+.+.+..+. +..+
T Consensus 196 l~~~P~n----~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~--~~~~~l-~-------~~~~a~~vr~----a~~~ 256 (822)
T PRK14574 196 VRLAPTS----EEVLKNHLEILQRNRIVEPALRLAKENPNL-VSA--EHYRQL-E-------RDAAAEQVRM----AVLP 256 (822)
T ss_pred HHhCCCC----HHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCH--HHHHHH-H-------HHHHHHHHhh----cccc
Confidence 7765442 345666777777777777776655442211 111 111110 0 0111111110 1000
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-CCCH-----hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 007461 328 DPEVCLKLVLMYIEEGLVEKTLDVVESMKNAKL-KISD-----CISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQVT 401 (603)
Q Consensus 328 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~-----~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~ 401 (603)
+..- --+.--.+.|+.-++.+...-. .|.. .+.--.+-++...+++.++++.|+.|...|.+....+
T Consensus 257 ~~~~-------~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~ 329 (822)
T PRK14574 257 TRSE-------TERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYA 329 (822)
T ss_pred cccc-------hhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHH
Confidence 0000 0000123444444555444211 1211 1122345566777888888888888887776555567
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcC-----CCcCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCC-----------
Q 007461 402 YASIINAYCRIALYSKAEKVFIEMQQKG-----FDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGC----------- 465 (603)
Q Consensus 402 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~-----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~----------- 465 (603)
-..+.++|...+++++|..+|+.+.... .+++......|.-+|...+++++|..+++++.+..-
T Consensus 330 ~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~ 409 (822)
T PRK14574 330 RRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGK 409 (822)
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCC
Confidence 7778888888888888888888876542 123344456777888888888888888888876310
Q ss_pred CC--CH-hHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 007461 466 EP--NV-WIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNRAREFDMCVKFYNEFRMNGGVIDRAIA 542 (603)
Q Consensus 466 ~p--~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 542 (603)
.| |- ..+..++..+...|++.+|++.++++.... +-|......+...+...|.+.+|+..++........ +..+.
T Consensus 410 ~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~-~~~~~ 487 (822)
T PRK14574 410 EPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESLAPR-SLILE 487 (822)
T ss_pred CCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCc-cHHHH
Confidence 01 11 223445566777888888888888887543 336667777888888888888888888766654222 44566
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 007461 543 GIMVGVFSKLSQIEELVKLLQDMKSEGTKLDERLYHSA 580 (603)
Q Consensus 543 ~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l 580 (603)
...+..+...|++++|..+.+.+.+. .|+......|
T Consensus 488 ~~~~~~al~l~e~~~A~~~~~~l~~~--~Pe~~~~~~l 523 (822)
T PRK14574 488 RAQAETAMALQEWHQMELLTDDVISR--SPEDIPSQEL 523 (822)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHhh--CCCchhHHHH
Confidence 67777777888888888888777754 4554444333
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.2e-15 Score=160.18 Aligned_cols=445 Identities=11% Similarity=0.048 Sum_probs=288.4
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHh
Q 007461 117 KSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDA--HTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMG 194 (603)
Q Consensus 117 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 194 (603)
+.+...-+-...+.|+++.|+..|++..+.. |+. ..+ .++..+...|+.++|+..+++.....+........+..
T Consensus 34 ~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~--P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ 110 (822)
T PRK14574 34 ADTQYDSLIIRARAGDTAPVLDYLQEESKAG--PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAAR 110 (822)
T ss_pred hhHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHH
Confidence 3343334444567777777777777776654 332 233 66666666777777777777776322334444444456
Q ss_pred hhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccCC
Q 007461 195 GYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGR 274 (603)
Q Consensus 195 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 274 (603)
.|...|++++|+++|+++.+.... ++..+..++..+...++.++|++.++++...++.. ..+-.++..+...++
T Consensus 111 ly~~~gdyd~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~-----~~~l~layL~~~~~~ 184 (822)
T PRK14574 111 AYRNEKRWDQALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAERDPTV-----QNYMTLSYLNRATDR 184 (822)
T ss_pred HHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcch-----HHHHHHHHHHHhcch
Confidence 677777777777777777766433 45555666667777777777777777766655431 223333333333455
Q ss_pred HHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 007461 275 AFEALKFFRDMKEKGILE-DPSIYASLICSFASITEVKLAEELFKEAEEKGMLRDPEVCLKLVLMYIEEGLVEKTLDVVE 353 (603)
Q Consensus 275 ~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 353 (603)
..+|++.++++.+. .| +...+..+..++.+.|-...|.++.++-.+. .+......| +.+.|.+.++
T Consensus 185 ~~~AL~~~ekll~~--~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~---f~~~~~~~l--------~~~~~a~~vr 251 (822)
T PRK14574 185 NYDALQASSEAVRL--APTSEEVLKNHLEILQRNRIVEPALRLAKENPNL---VSAEHYRQL--------ERDAAAEQVR 251 (822)
T ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc---cCHHHHHHH--------HHHHHHHHHh
Confidence 55577777777765 33 4555566666666677666666555442110 011111110 0111111111
Q ss_pred HHHhCCCCCCHhhHHHHHHHHHhcCC---HHHHHHHHHHHHHc-CCCCCH-H----HHHHHHHHHHhcCChHHHHHHHHH
Q 007461 354 SMKNAKLKISDCISCAIVNGFSKRRG---YWAAVKVYEQLISQ-GCIPGQ-V----TYASIINAYCRIALYSKAEKVFIE 424 (603)
Q Consensus 354 ~~~~~~~~~~~~~~~~li~~~~~~~~---~~~a~~~~~~m~~~-g~~p~~-~----~~~~ll~~~~~~g~~~~a~~~~~~ 424 (603)
.. ..++. ....+ .+.|+.-++.+... +-.|.. . ...-.+-++...|+..++++.|+.
T Consensus 252 ~a----~~~~~----------~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~ 317 (822)
T PRK14574 252 MA----VLPTR----------SETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEA 317 (822)
T ss_pred hc----ccccc----------cchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 11 00000 01112 34555556665542 222322 2 223445678889999999999999
Q ss_pred HHHcCCCcCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcC-----CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 007461 425 MQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKG-----CEPNVWIYNSLMDMHGRAKNLRQVEKLWKEMERRK 499 (603)
Q Consensus 425 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-----~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 499 (603)
+...+.+....+-..+.++|...+++++|+.+++.+.... ..++......|.-+|...+++++|..+++++.+..
T Consensus 318 l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~ 397 (822)
T PRK14574 318 MEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQT 397 (822)
T ss_pred hhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcC
Confidence 9988866456788999999999999999999999997642 12344446788999999999999999999998731
Q ss_pred C-------------CCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 007461 500 V-------------TPDKV-SYTTVISAYNRAREFDMCVKFYNEFRMNGGVIDRAIAGIMVGVFSKLSQIEELVKLLQDM 565 (603)
Q Consensus 500 ~-------------~p~~~-~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 565 (603)
. .||-. .+..++..+...|++.+|++.++++....+. |......+.+.+...|.+.+|.+.++..
T Consensus 398 p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~-n~~l~~~~A~v~~~Rg~p~~A~~~~k~a 476 (822)
T PRK14574 398 PYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPA-NQNLRIALASIYLARDLPRKAEQELKAV 476 (822)
T ss_pred CcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 1 12222 2455677788999999999999999886544 8889999999999999999999999887
Q ss_pred HhCCCCCC-HHHHHHHHHHHHhcCcHHHHHHHHhhc
Q 007461 566 KSEGTKLD-ERLYHSAMNALRDAGLQMQAQWLQQNF 600 (603)
Q Consensus 566 ~~~g~~~~-~~~~~~ll~a~~~~g~~~~a~~~~~~~ 600 (603)
... .|+ ..+......++...|++++|..+.+..
T Consensus 477 ~~l--~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l 510 (822)
T PRK14574 477 ESL--APRSLILERAQAETAMALQEWHQMELLTDDV 510 (822)
T ss_pred hhh--CCccHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 754 454 566677788899999999998888655
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.2e-15 Score=153.23 Aligned_cols=493 Identities=13% Similarity=0.071 Sum_probs=308.6
Q ss_pred cCCCChHHHHHHHHHHhh-CCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH---ccCC
Q 007461 92 KDPQTQELAYDYYNEAKK-LPEFRPEKSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCV---RARK 167 (603)
Q Consensus 92 ~~~~~~~~a~~~~~~~~~-~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~---~~~~ 167 (603)
..+++.. |+.+|..+.. .+...||+.+ .+...+.+.|+.+.|+..|+...+.+ +.++.++..|.-.-. ....
T Consensus 176 nkkdY~~-al~yyk~al~inp~~~aD~rI--gig~Cf~kl~~~~~a~~a~~ralqLd-p~~v~alv~L~~~~l~~~d~~s 251 (1018)
T KOG2002|consen 176 NKKDYRG-ALKYYKKALRINPACKADVRI--GIGHCFWKLGMSEKALLAFERALQLD-PTCVSALVALGEVDLNFNDSDS 251 (1018)
T ss_pred ccccHHH-HHHHHHHHHhcCcccCCCccc--hhhhHHHhccchhhHHHHHHHHHhcC-hhhHHHHHHHHHHHHHccchHH
Confidence 3345544 9999988653 3445666543 23356678889999999998888775 233344433332222 2234
Q ss_pred hHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCC--CChhhHHHHHHHHHHcCCHHHHHHHHH
Q 007461 168 FKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIV--LDSGCYCQIMEAYYKIGDSEKVAALFL 245 (603)
Q Consensus 168 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~--p~~~~~~~ll~~~~~~g~~~~a~~~~~ 245 (603)
+..+..++...-..++.++.+.+.|..-|.-.|+++.+..+...+...-.. .-...|-.+.++|-..|++++|...|.
T Consensus 252 ~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~ 331 (1018)
T KOG2002|consen 252 YKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYM 331 (1018)
T ss_pred HHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 566777777777777778888888888888888888888888777764311 123357778888888888888888887
Q ss_pred HHHhCCCCCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccC----CHHHHHHHHHHH
Q 007461 246 ECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEKGILE-DPSIYASLICSFASIT----EVKLAEELFKEA 320 (603)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g----~~~~a~~~~~~~ 320 (603)
+....+.... +..+--+.+.+.+.|+.+++...|+..... .| +..+...+...|+..+ ..+.|..++.+.
T Consensus 332 ~s~k~~~d~~---~l~~~GlgQm~i~~~dle~s~~~fEkv~k~--~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~ 406 (1018)
T KOG2002|consen 332 ESLKADNDNF---VLPLVGLGQMYIKRGDLEESKFCFEKVLKQ--LPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKV 406 (1018)
T ss_pred HHHccCCCCc---cccccchhHHHHHhchHHHHHHHHHHHHHh--CcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHH
Confidence 7766544321 233556778888888888888888888765 33 4456666666665553 345555555555
Q ss_pred HHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH----HhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc---
Q 007461 321 EEKGMLRDPEVCLKLVLMYIEEGLVEKTLDVVESM----KNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLISQ--- 393 (603)
Q Consensus 321 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~----~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--- 393 (603)
.+.- +.|...|-.+..+|....-+.. +..|... ...+-.+.....|.+...+...|.+++|...|......
T Consensus 407 ~~~~-~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~ 484 (1018)
T KOG2002|consen 407 LEQT-PVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLE 484 (1018)
T ss_pred Hhcc-cccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhh
Confidence 5443 2345555555544444333322 3333322 22232344445555555555566666655555554433
Q ss_pred CCCCCH----------------------------------------HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcC
Q 007461 394 GCIPGQ----------------------------------------VTYASIINAYCRIALYSKAEKVFIEMQQKGFDKC 433 (603)
Q Consensus 394 g~~p~~----------------------------------------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 433 (603)
...+|. ..|..++......+...+|...++...... ..+
T Consensus 485 ~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~n 563 (1018)
T KOG2002|consen 485 VANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSN 563 (1018)
T ss_pred hcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCC
Confidence 111111 112222211122244455555555554432 344
Q ss_pred HhhHHHHHHHHHccCCHHHHHHHHHHHHHc-CCCCCHhHHHHHHHHHHh------------cCCHHHHHHHHHHHHhCCC
Q 007461 434 VVAYSSMVAMYGKTGRIRDAMWLVAKMKAK-GCEPNVWIYNSLMDMHGR------------AKNLRQVEKLWKEMERRKV 500 (603)
Q Consensus 434 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~li~~~~~------------~g~~~~a~~~~~~m~~~~~ 500 (603)
+..++.+...+.+...+..|.+-|+.+.+. ...+|..+.-+|...|.. .+..++|+++|.+.++..
T Consensus 564 p~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d- 642 (1018)
T KOG2002|consen 564 PNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND- 642 (1018)
T ss_pred cHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-
Confidence 455555555666666666666655555443 112455544444444432 235677888888888653
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhC-CCCCCHHHHHH
Q 007461 501 TPDKVSYTTVISAYNRAREFDMCVKFYNEFRMNGGVIDRAIAGIMVGVFSKLSQIEELVKLLQDMKSE-GTKLDERLYHS 579 (603)
Q Consensus 501 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-g~~~~~~~~~~ 579 (603)
+-|...-|.+.-+++..|++++|..+|.+.++.... ...+|-.+..+|..+|++..|+++|+...+. +-.-+..+...
T Consensus 643 pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~-~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~ 721 (1018)
T KOG2002|consen 643 PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSD-FEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHY 721 (1018)
T ss_pred cchhhhccchhhhhhhccCchHHHHHHHHHHHHHhh-CCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHH
Confidence 336677788888899999999999999999887442 4567778999999999999999999987776 33456788888
Q ss_pred HHHHHHhcCcHHHHHHHHh
Q 007461 580 AMNALRDAGLQMQAQWLQQ 598 (603)
Q Consensus 580 ll~a~~~~g~~~~a~~~~~ 598 (603)
|.+++...|.+.+|.+.+.
T Consensus 722 Lara~y~~~~~~eak~~ll 740 (1018)
T KOG2002|consen 722 LARAWYEAGKLQEAKEALL 740 (1018)
T ss_pred HHHHHHHhhhHHHHHHHHH
Confidence 9999999999999887654
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.82 E-value=2e-15 Score=151.51 Aligned_cols=477 Identities=12% Similarity=0.081 Sum_probs=351.0
Q ss_pred CCCChHHHHHHHHHHhhCCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHccCChHH
Q 007461 93 DPQTQELAYDYYNEAKKLPEFRPEKSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVL--PDAHTCSRLVASCVRARKFKI 170 (603)
Q Consensus 93 ~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~ll~~~~~~~~~~~ 170 (603)
+.+....++.++..+.... +.++...+.|...+.--|++..++.+.+.+...... .-...|-.+.++|...|+++.
T Consensus 248 d~~s~~~~~~ll~~ay~~n--~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ek 325 (1018)
T KOG2002|consen 248 DSDSYKKGVQLLQRAYKEN--NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEK 325 (1018)
T ss_pred chHHHHHHHHHHHHHHhhc--CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHH
Confidence 3344455888888777654 557778999999999999999999999998866421 123457778899999999999
Q ss_pred HHHHHHHHHhcCCcc-hhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcC----CHHHHHHHHH
Q 007461 171 ANTLLQVFITDGEIA-LLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIG----DSEKVAALFL 245 (603)
Q Consensus 171 a~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g----~~~~a~~~~~ 245 (603)
|...|.+..+..+.+ +..+--|...|.+.|+.+.+...|+.+.+.. +-+..+...|...|+..+ ..+.|..++.
T Consensus 326 A~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~ 404 (1018)
T KOG2002|consen 326 AFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLG 404 (1018)
T ss_pred HHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHH
Confidence 999999988877765 6677788999999999999999999998863 336677778888888775 4566666666
Q ss_pred HHHhCCCCCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHH----HCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 007461 246 ECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMK----EKGILEDPSIYASLICSFASITEVKLAEELFKEAE 321 (603)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 321 (603)
+..... +.|..+|-.+...+....-+.. +.+|.... ..+-.+.....|.+.......|+++.|...|+...
T Consensus 405 K~~~~~----~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~ 479 (1018)
T KOG2002|consen 405 KVLEQT----PVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSAL 479 (1018)
T ss_pred HHHhcc----cccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHh
Confidence 555544 4456788888888777665555 77776543 45556788899999999999999999999999887
Q ss_pred Hc---CCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007461 322 EK---GMLRDP------EVCLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLIS 392 (603)
Q Consensus 322 ~~---~~~~~~------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 392 (603)
.. ...+|. .+--.+...+-..++.+.|.+.|..+....+. -...|--+.......+...+|...++....
T Consensus 480 ~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~-YId~ylRl~~ma~~k~~~~ea~~~lk~~l~ 558 (1018)
T KOG2002|consen 480 GKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPG-YIDAYLRLGCMARDKNNLYEASLLLKDALN 558 (1018)
T ss_pred hhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCch-hHHHHHHhhHHHHhccCcHHHHHHHHHHHh
Confidence 65 122222 23334566667778999999999999887652 111222222222234667788888888776
Q ss_pred cCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCcCHhhHHHHHHHHHc------------cCCHHHHHHHHHH
Q 007461 393 QGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQKG-FDKCVVAYSSMVAMYGK------------TGRIRDAMWLVAK 459 (603)
Q Consensus 393 ~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~------------~g~~~~A~~~~~~ 459 (603)
.. ..++..+..+...+.+...+..|.+-|+...+.- ..+|..+.-.|.+.|.+ .+..++|+++|.+
T Consensus 559 ~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~k 637 (1018)
T KOG2002|consen 559 ID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGK 637 (1018)
T ss_pred cc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHH
Confidence 43 3444555566667777888888888777766542 23566666666665543 2456789999998
Q ss_pred HHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC
Q 007461 460 MKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNRAREFDMCVKFYNEFRMNGG-VID 538 (603)
Q Consensus 460 m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~~ 538 (603)
.+... +-|...-|.+.-+++..|++.+|..+|....+... -+..+|..+..+|..+|++..|+++|+...+.-. .-+
T Consensus 638 vL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~ 715 (1018)
T KOG2002|consen 638 VLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNR 715 (1018)
T ss_pred HHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence 88752 44677778888889999999999999999987643 2446788999999999999999999998766543 456
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 007461 539 RAIAGIMVGVFSKLSQIEELVKLLQDMKSEGTKLDERLYHSAM 581 (603)
Q Consensus 539 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll 581 (603)
..+...|..++.+.|.+.+|.+.+.........-....|+..+
T Consensus 716 ~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~ 758 (1018)
T KOG2002|consen 716 SEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLAL 758 (1018)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHH
Confidence 7788899999999999999999988887664443445555443
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.79 E-value=6e-13 Score=128.18 Aligned_cols=480 Identities=11% Similarity=0.001 Sum_probs=359.5
Q ss_pred HHHHHHhhCCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhc
Q 007461 102 DYYNEAKKLPEFRPEKSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITD 181 (603)
Q Consensus 102 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 181 (603)
++++++.++ ++.++..|... +...+.+.|+-++....+. ++.+...|. +|++..-|+.|..++..+.+.
T Consensus 367 RVlRKALe~--iP~sv~LWKaA----VelE~~~darilL~rAvec-cp~s~dLwl----AlarLetYenAkkvLNkaRe~ 435 (913)
T KOG0495|consen 367 RVLRKALEH--IPRSVRLWKAA----VELEEPEDARILLERAVEC-CPQSMDLWL----ALARLETYENAKKVLNKAREI 435 (913)
T ss_pred HHHHHHHHh--CCchHHHHHHH----HhccChHHHHHHHHHHHHh-ccchHHHHH----HHHHHHHHHHHHHHHHHHHhh
Confidence 344444443 23334444432 2344556677777776654 244444444 455667788999999999998
Q ss_pred CCcchhhHHHHHhhhhhcCcHHHHHHHHHH----HHhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCc
Q 007461 182 GEIALLAFNSAMGGYNKLHMYYSTILVYEK----MKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPF 257 (603)
Q Consensus 182 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~----m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 257 (603)
-|.+..+|.+....--.+|+.+...+++++ +...|+..+..-|..=...|-+.|.+-.+..+...+...++....
T Consensus 436 iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed- 514 (913)
T KOG0495|consen 436 IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEED- 514 (913)
T ss_pred CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccch-
Confidence 888999999999888899998888887765 345688888888888888899999999999998888877765433
Q ss_pred cHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 007461 258 STHMYKILCDSLGKSGRAFEALKFFRDMKEKGILEDPSIYASLICSFASITEVKLAEELFKEAEEKGMLRDPEVCLKLVL 337 (603)
Q Consensus 258 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 337 (603)
--.+|+.-.+.|.+.+.++-|..+|...++. ..-+...|......--..|..+....+++++...- +-....|.....
T Consensus 515 ~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~-pkae~lwlM~ak 592 (913)
T KOG0495|consen 515 RKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC-PKAEILWLMYAK 592 (913)
T ss_pred hHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CcchhHHHHHHH
Confidence 2357899999999999999999999888775 22255667666666667888899999999888763 335566777777
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHH
Q 007461 338 MYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIALYSK 417 (603)
Q Consensus 338 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~ 417 (603)
-+-..|++..|..++...-+.++. +..+|-.-+..-..+..++.|..+|.+.... .|+...|.--+..-.-.++.++
T Consensus 593 e~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~ee 669 (913)
T KOG0495|consen 593 EKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEE 669 (913)
T ss_pred HHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHH
Confidence 788889999999999998888775 7778888888889999999999999888764 4666666666666666788899
Q ss_pred HHHHHHHHHHcCCCcCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 007461 418 AEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEMER 497 (603)
Q Consensus 418 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 497 (603)
|.+++++..+. ++.-...|..+.+.+-+.++++.|.+.|..-.+. ++-.+..|-.|.+.--+.|.+-.|..++++..-
T Consensus 670 A~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarl 747 (913)
T KOG0495|consen 670 ALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARL 747 (913)
T ss_pred HHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHh
Confidence 99999888776 4555667788888888888888888888777665 444566677777777778888888888888765
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-----------------------------CCCCHHHHHHHHHH
Q 007461 498 RKVTPDKVSYTTVISAYNRAREFDMCVKFYNEFRMNG-----------------------------GVIDRAIAGIMVGV 548 (603)
Q Consensus 498 ~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-----------------------------~~~~~~~~~~l~~~ 548 (603)
.+. -|...|...|+.=.+.|+.+.|..+..++.+.- ..-|+...-.+...
T Consensus 748 kNP-k~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~l 826 (913)
T KOG0495|consen 748 KNP-KNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKL 826 (913)
T ss_pred cCC-CcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHH
Confidence 543 356678888888888888888877776655421 22344455556667
Q ss_pred HHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHhhccC
Q 007461 549 FSKLSQIEELVKLLQDMKSEGTKLDERLYHSAMNALRDAGLQMQAQWLQQNFEG 602 (603)
Q Consensus 549 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~ 602 (603)
|....++++|.+.|.+.++.+ +....+|..+..-...+|..+.-.+++..++.
T Consensus 827 fw~e~k~~kar~Wf~Ravk~d-~d~GD~wa~fykfel~hG~eed~kev~~~c~~ 879 (913)
T KOG0495|consen 827 FWSEKKIEKAREWFERAVKKD-PDNGDAWAWFYKFELRHGTEEDQKEVLKKCET 879 (913)
T ss_pred HHHHHHHHHHHHHHHHHHccC-CccchHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 777788999999999999764 34467888889999999998888888887753
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.7e-13 Score=137.00 Aligned_cols=364 Identities=13% Similarity=0.092 Sum_probs=279.7
Q ss_pred HHhcCCCChHHHHHHHHHHhhCCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCh
Q 007461 89 GMLKDPQTQELAYDYYNEAKKLPEFRPEKSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKF 168 (603)
Q Consensus 89 ~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 168 (603)
.+...|+..+ |.+++.++++.. +.+...|..|...|-..|+.+.+...+-.+.-.+ +.|..-|..+.....+.|.+
T Consensus 148 ~lfarg~~ee-A~~i~~EvIkqd--p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i 223 (895)
T KOG2076|consen 148 NLFARGDLEE-AEEILMEVIKQD--PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNI 223 (895)
T ss_pred HHHHhCCHHH-HHHHHHHHHHhC--ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccH
Confidence 3445577776 999999999874 5677889999999999999999998877665554 66778999999999999999
Q ss_pred HHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhH----HHHHHHHHHcCCHHHHHHHH
Q 007461 169 KIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCY----CQIMEAYYKIGDSEKVAALF 244 (603)
Q Consensus 169 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~----~~ll~~~~~~g~~~~a~~~~ 244 (603)
++|.-+|.+..+..|++....---...|-+.|+...|.+.|.++.+...+.|..-. -.+++.+...++.+.|.+.+
T Consensus 224 ~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~l 303 (895)
T KOG2076|consen 224 NQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKAL 303 (895)
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 99999999999999988777777788899999999999999999987543233322 23456677778889999999
Q ss_pred HHHHhCCCCCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCC---------------------------CHHHH
Q 007461 245 LECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEKGILE---------------------------DPSIY 297 (603)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---------------------------~~~~~ 297 (603)
+........ ..+...++.++..|.+...++.+.....++.....++ +...
T Consensus 304 e~~~s~~~~--~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v- 380 (895)
T KOG2076|consen 304 EGALSKEKD--EASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV- 380 (895)
T ss_pred HHHHhhccc--cccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-
Confidence 887763211 1223469999999999999999999998887622222 2222
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHH
Q 007461 298 ASLICSFASITEVKLAEELFKEAEEKGMLR--DPEVCLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFS 375 (603)
Q Consensus 298 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 375 (603)
..+.-++.+....+....+.....+.+..+ +...|.-+.++|...|++.+|.++|..+......-+..+|..+..+|.
T Consensus 381 ~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~ 460 (895)
T KOG2076|consen 381 IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYM 460 (895)
T ss_pred HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHH
Confidence 122334446666677777777777776433 567888999999999999999999999998877777889999999999
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH--------HcCCCcCHhhHHHHHHHHHcc
Q 007461 376 KRRGYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQ--------QKGFDKCVVAYSSMVAMYGKT 447 (603)
Q Consensus 376 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~--------~~~~~~~~~~~~~li~~~~~~ 447 (603)
..|.+++|++.|+...... +-+...-..|-..+-+.|+.++|.+.+..+. ..+..|+....-...+.+.+.
T Consensus 461 ~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~ 539 (895)
T KOG2076|consen 461 ELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQV 539 (895)
T ss_pred HHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHh
Confidence 9999999999999988753 2233455566677889999999999999854 223455666666667777888
Q ss_pred CCHHHHHHHHHHH
Q 007461 448 GRIRDAMWLVAKM 460 (603)
Q Consensus 448 g~~~~A~~~~~~m 460 (603)
|+.++-..+...|
T Consensus 540 gk~E~fi~t~~~L 552 (895)
T KOG2076|consen 540 GKREEFINTASTL 552 (895)
T ss_pred hhHHHHHHHHHHH
Confidence 8877755544444
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.2e-14 Score=129.35 Aligned_cols=421 Identities=12% Similarity=0.084 Sum_probs=273.3
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHhcCC-cchhhHHHHHhh---hhhcCcHHHHHHHHHHHHhCCCCCChhhHHHH
Q 007461 152 AHTCSRLVASCVRARKFKIANTLLQVFITDGE-IALLAFNSAMGG---YNKLHMYYSTILVYEKMKSAGIVLDSGCYCQI 227 (603)
Q Consensus 152 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~l~~~---~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 227 (603)
+.+=+.|+.. ...|.+.++.-+++.|.+.+. .+...-..|++. |....-+-.-.+.|-.|.+.|-. +..+|
T Consensus 116 V~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~-S~~sW--- 190 (625)
T KOG4422|consen 116 VETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGED-STSSW--- 190 (625)
T ss_pred hcchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccc-ccccc---
Confidence 3455555553 456888899999999988776 344444444433 32222222223344445444432 22222
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 007461 228 MEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEKGILEDPSIYASLICSFASI 307 (603)
Q Consensus 228 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 307 (603)
+.|++.+ -+|+..++. ..+|..||.++++--..+.|.++|++-.....+.+..+||.+|.+..-.
T Consensus 191 -----K~G~vAd--L~~E~~PKT--------~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~ 255 (625)
T KOG4422|consen 191 -----KSGAVAD--LLFETLPKT--------DETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS 255 (625)
T ss_pred -----ccccHHH--HHHhhcCCC--------chhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh
Confidence 3344433 333322221 1478899999999988999999999888887788888999888876533
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH----HHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHH-
Q 007461 308 TEVKLAEELFKEAEEKGMLRDPEVCLKLVLMYIEEGLVEKT----LDVVESMKNAKLKISDCISCAIVNGFSKRRGYWA- 382 (603)
Q Consensus 308 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a----~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~- 382 (603)
. ..+++.+|....+.||..++|+++.+..+.|+++.| .+++.+|++.|+.|+..+|..+|..+++.++..+
T Consensus 256 ~----~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~ 331 (625)
T KOG4422|consen 256 V----GKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKV 331 (625)
T ss_pred c----cHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhh
Confidence 2 377888888888889999999999999999987654 5677788889999999999999988888877654
Q ss_pred HHHHHHHHHH----cCCCC----CHHHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCcC---HhhHHHHHHHHHcc
Q 007461 383 AVKVYEQLIS----QGCIP----GQVTYASIINAYCRIALYSKAEKVFIEMQQK----GFDKC---VVAYSSMVAMYGKT 447 (603)
Q Consensus 383 a~~~~~~m~~----~g~~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~~~---~~~~~~li~~~~~~ 447 (603)
+..++.++.. +.++| |...|...+..|.+..+.+.|.++..-+... -+.|+ ..-|..+..+.++.
T Consensus 332 as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~ 411 (625)
T KOG4422|consen 332 ASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQM 411 (625)
T ss_pred hHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHH
Confidence 4444444433 22222 4456777888888888888888877766532 12232 23456677777888
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-CH------
Q 007461 448 GRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNRAR-EF------ 520 (603)
Q Consensus 448 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-~~------ 520 (603)
...+.-...++.|.-.-+-|+..+...++++....|.++-..++|.+++..|..-+.....-++..+++.. ..
T Consensus 412 es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~ 491 (625)
T KOG4422|consen 412 ESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPERE 491 (625)
T ss_pred HHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHH
Confidence 88888888888888766778888888888888888888888888888887765544444444444444332 11
Q ss_pred --H-----HHHHHH-------HHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCC----CCCHHHHHHHHH
Q 007461 521 --D-----MCVKFY-------NEFRMNGGVIDRAIAGIMVGVFSKLSQIEELVKLLQDMKSEGT----KLDERLYHSAMN 582 (603)
Q Consensus 521 --~-----~a~~~~-------~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~----~~~~~~~~~ll~ 582 (603)
. -|..++ .++++ ........+.+.-.+.|.|..++|.+++.-..+.+- .|.......+++
T Consensus 492 Ql~~~~ak~aad~~e~~e~~~~R~r~--~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d 569 (625)
T KOG4422|consen 492 QLQVAFAKCAADIKEAYESQPIRQRA--QDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMD 569 (625)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHh--ccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHH
Confidence 0 011111 12222 233455566677778888888888888888765532 233333345556
Q ss_pred HHHhcCcHHHHHHHHh
Q 007461 583 ALRDAGLQMQAQWLQQ 598 (603)
Q Consensus 583 a~~~~g~~~~a~~~~~ 598 (603)
+-...+..-.|..+++
T Consensus 570 ~a~~~~spsqA~~~lQ 585 (625)
T KOG4422|consen 570 SAKVSNSPSQAIEVLQ 585 (625)
T ss_pred HHHhcCCHHHHHHHHH
Confidence 6566666666665554
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.3e-14 Score=133.49 Aligned_cols=462 Identities=11% Similarity=0.064 Sum_probs=318.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHccCChHHHHHHHHHHHhcCC-c----chhhHHHH
Q 007461 119 TLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTC-SRLVASCVRARKFKIANTLLQVFITDGE-I----ALLAFNSA 192 (603)
Q Consensus 119 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~----~~~~~~~l 192 (603)
++..|.+.|..+....+|+..|+-+.+...-|+.-.. ..+.+.+.+.+.+..|++.++.....-| . ...+.+.+
T Consensus 203 vl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~ni 282 (840)
T KOG2003|consen 203 VLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNI 282 (840)
T ss_pred HHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhc
Confidence 3445667777788889999999988877666665332 3355667788899999999998776544 2 34567777
Q ss_pred HhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC---------CccHHHHH
Q 007461 193 MGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDST---------PFSTHMYK 263 (603)
Q Consensus 193 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~---------~~~~~~~~ 263 (603)
...+.+.|.++.|+..|+...+. .||..+-..|+-++...|+-++..+.|..|......++ .|+....|
T Consensus 283 gvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~ 360 (840)
T KOG2003|consen 283 GVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLN 360 (840)
T ss_pred CeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHH
Confidence 78899999999999999998875 57877777777788889999999999999875432221 12222222
Q ss_pred H-----HHHHHhccCC--HHHHHHHHHHHHHCCCCCCHHH-------------HH--------HHHHHHHccCCHHHHHH
Q 007461 264 I-----LCDSLGKSGR--AFEALKFFRDMKEKGILEDPSI-------------YA--------SLICSFASITEVKLAEE 315 (603)
Q Consensus 264 ~-----li~~~~~~g~--~~~A~~~~~~m~~~g~~p~~~~-------------~~--------~ll~~~~~~g~~~~a~~ 315 (603)
. .+.-..+... .+.++-.--+++.--+.||... +. .-...+.+.|+++.|.+
T Consensus 361 eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aie 440 (840)
T KOG2003|consen 361 EAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIE 440 (840)
T ss_pred HHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHH
Confidence 2 2222222221 2222222222222222333110 00 01122457788888888
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 007461 316 LFKEAEEKGMLRDPEVCLKLVLMYIE--EGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLISQ 393 (603)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 393 (603)
+++-+.+..-..-....+.|-..+.- -.++..|...-+.....+- -+......-.+....+|++++|.+.|++....
T Consensus 441 ilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dr-yn~~a~~nkgn~~f~ngd~dka~~~ykeal~n 519 (840)
T KOG2003|consen 441 ILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDR-YNAAALTNKGNIAFANGDLDKAAEFYKEALNN 519 (840)
T ss_pred HHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccc-cCHHHhhcCCceeeecCcHHHHHHHHHHHHcC
Confidence 88888776544333334433333333 2346666666665544332 12212222222334578999999999998865
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhHHH
Q 007461 394 GCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYN 473 (603)
Q Consensus 394 g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 473 (603)
.-.-....|++= -.+-..|++++|++.|-++... +..+..+...+...|-...+...|++++-+.... ++.|+.+.+
T Consensus 520 dasc~ealfnig-lt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ils 596 (840)
T KOG2003|consen 520 DASCTEALFNIG-LTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILS 596 (840)
T ss_pred chHHHHHHHHhc-ccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHH
Confidence 432222333332 2456789999999999888654 2446778888889999999999999999887765 566889999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-Hcc
Q 007461 474 SLMDMHGRAKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNRAREFDMCVKFYNEFRMNGGVIDRAIAGIMVGVF-SKL 552 (603)
Q Consensus 474 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~ 552 (603)
-|...|-+.|+-.+|.+.+-+--. -++-|..+...|...|....-+++++.+|++..- +.|+..-|..++..| .+.
T Consensus 597 kl~dlydqegdksqafq~~ydsyr-yfp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrs 673 (840)
T KOG2003|consen 597 KLADLYDQEGDKSQAFQCHYDSYR-YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRS 673 (840)
T ss_pred HHHHHhhcccchhhhhhhhhhccc-ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhc
Confidence 999999999999999988766543 2556778888898889988889999999998765 679999999888755 568
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcH
Q 007461 553 SQIEELVKLLQDMKSEGTKLDERLYHSAMNALRDAGLQ 590 (603)
Q Consensus 553 g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~a~~~~g~~ 590 (603)
|++++|.++++....+ ++.|...+.-|++.|...|..
T Consensus 674 gnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl~ 710 (840)
T KOG2003|consen 674 GNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGLK 710 (840)
T ss_pred ccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccch
Confidence 9999999999999875 788899999999999888764
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.5e-13 Score=123.37 Aligned_cols=238 Identities=15% Similarity=0.164 Sum_probs=111.4
Q ss_pred chhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccHHHHHH
Q 007461 185 ALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKI 264 (603)
Q Consensus 185 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 264 (603)
+..++..+|.++++--..++|.+++++-.....+.+..+||.+|.+-.-.-+ .+++.+|......| |..|+|+
T Consensus 206 T~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~P---nl~TfNa 278 (625)
T KOG4422|consen 206 TDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKMTP---NLFTFNA 278 (625)
T ss_pred CchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCC---chHhHHH
Confidence 4445555555555555555555555544444444444455544443322211 34444444444433 2345555
Q ss_pred HHHHHhccCCHHH----HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHH-HHHHHHHHHHc----CCC----CCHHH
Q 007461 265 LCDSLGKSGRAFE----ALKFFRDMKEKGILEDPSIYASLICSFASITEVKL-AEELFKEAEEK----GML----RDPEV 331 (603)
Q Consensus 265 li~~~~~~g~~~~----A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~-a~~~~~~~~~~----~~~----~~~~~ 331 (603)
++.+..+.|+++. |.+++.+|++.|+.|...+|..+|..+.+.++..+ +..++.++... .+. .|...
T Consensus 279 lL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~F 358 (625)
T KOG4422|consen 279 LLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKF 358 (625)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHH
Confidence 5555555554433 33444555555555555555555555555444322 22222222211 111 12333
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCC----CCCC---HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 007461 332 CLKLVLMYIEEGLVEKTLDVVESMKNAK----LKIS---DCISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYAS 404 (603)
Q Consensus 332 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ 404 (603)
+..-|..|.+..+.+-|.++..-+...+ +.|+ ..-|..+....++....+.-...|+.|.-.-.-|+..+...
T Consensus 359 F~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~ 438 (625)
T KOG4422|consen 359 FQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIH 438 (625)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHH
Confidence 4444444555555555554444333211 1111 11133444455555555555666666655544555556666
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcC
Q 007461 405 IINAYCRIALYSKAEKVFIEMQQKG 429 (603)
Q Consensus 405 ll~~~~~~g~~~~a~~~~~~~~~~~ 429 (603)
++++..-.|.++-.-+++..++..|
T Consensus 439 ~lrA~~v~~~~e~ipRiw~D~~~~g 463 (625)
T KOG4422|consen 439 LLRALDVANRLEVIPRIWKDSKEYG 463 (625)
T ss_pred HHHHHhhcCcchhHHHHHHHHHHhh
Confidence 6666666666666666666655554
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.4e-12 Score=130.60 Aligned_cols=475 Identities=11% Similarity=0.042 Sum_probs=335.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCc
Q 007461 122 LLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHM 201 (603)
Q Consensus 122 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 201 (603)
..+..+...|+.++|..++.+.++.. +.....|-.|...|-..|+.+.+...+-.+-...|.|..-|..+.....+.|+
T Consensus 144 ~eAN~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~ 222 (895)
T KOG2076|consen 144 GEANNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGN 222 (895)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhccc
Confidence 34444555699999999999999887 77889999999999999999999988888888888889999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCC-ccHHHHHHHHHHHhccCCHHHHHH
Q 007461 202 YYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTP-FSTHMYKILCDSLGKSGRAFEALK 280 (603)
Q Consensus 202 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~ 280 (603)
+.+|.-+|.+.++... ++...+-.-...|-+.|+...|..-|.++....+..+- .....--.++..+...++-+.|++
T Consensus 223 i~qA~~cy~rAI~~~p-~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~ 301 (895)
T KOG2076|consen 223 INQARYCYSRAIQANP-SNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAK 301 (895)
T ss_pred HHHHHHHHHHHHhcCC-cchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 9999999999998753 35555556677899999999999999999887662210 001122234566777788899999
Q ss_pred HHHHHHHC-CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcC---------------------------CCCCHHHH
Q 007461 281 FFRDMKEK-GILEDPSIYASLICSFASITEVKLAEELFKEAEEKG---------------------------MLRDPEVC 332 (603)
Q Consensus 281 ~~~~m~~~-g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---------------------------~~~~~~~~ 332 (603)
.++..... +-..+...++.++..+.+...++.+........... +.++..+
T Consensus 302 ~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v- 380 (895)
T KOG2076|consen 302 ALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV- 380 (895)
T ss_pred HHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-
Confidence 99888763 223355677888888888888888888777766521 2222233
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCC--CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 007461 333 LKLVLMYIEEGLVEKTLDVVESMKNAK--LKISDCISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINAYC 410 (603)
Q Consensus 333 ~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 410 (603)
-.++-++......+....+.....+.+ +.-+...|.-+..+|...|.+.+|+.+|..+......-+...|-.+...|-
T Consensus 381 ~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~ 460 (895)
T KOG2076|consen 381 IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYM 460 (895)
T ss_pred HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHH
Confidence 123344445555555555555555555 444556688899999999999999999999998765566778889999999
Q ss_pred hcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCCHHHHHHHHHHHH--------HcCCCCCHhHHHHHHHHHHhc
Q 007461 411 RIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMK--------AKGCEPNVWIYNSLMDMHGRA 482 (603)
Q Consensus 411 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~--------~~~~~p~~~~~~~li~~~~~~ 482 (603)
..|..++|.+.|+...... +.+...--.|...+-+.|++++|.++++.+. ..+..|+..........+...
T Consensus 461 ~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~ 539 (895)
T KOG2076|consen 461 ELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQV 539 (895)
T ss_pred HHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHh
Confidence 9999999999999999875 5667777888888999999999999999964 223455566666667778888
Q ss_pred CCHHHHHHHHHHHHhCC----------------------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH------HHCC
Q 007461 483 KNLRQVEKLWKEMERRK----------------------VTPDKVSYTTVISAYNRAREFDMCVKFYNEF------RMNG 534 (603)
Q Consensus 483 g~~~~a~~~~~~m~~~~----------------------~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~------~~~~ 534 (603)
|+.++-..+...|+... ..-...+...++.+-.+.++......-...- ...+
T Consensus 540 gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~ 619 (895)
T KOG2076|consen 540 GKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRG 619 (895)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhcc
Confidence 88887655555543321 1111222233333333444332222222111 1112
Q ss_pred CCCCH--HHHHHHHHHHHccCCHHHHHHHHHHHHhCCCC-CCHH----HHHHHHHHHHhcCcHHHHHHHHhhc
Q 007461 535 GVIDR--AIAGIMVGVFSKLSQIEELVKLLQDMKSEGTK-LDER----LYHSAMNALRDAGLQMQAQWLQQNF 600 (603)
Q Consensus 535 ~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~-~~~~----~~~~ll~a~~~~g~~~~a~~~~~~~ 600 (603)
+..+. ..+.-++..+.+.|++++|..+...+.+.... -+.. .-...+.++...+++..|...+..+
T Consensus 620 Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~ 692 (895)
T KOG2076|consen 620 LSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSV 692 (895)
T ss_pred CcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 22222 13455777888999999999999988875332 2222 2334556778889999988877665
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.72 E-value=6.5e-12 Score=121.21 Aligned_cols=449 Identities=10% Similarity=0.064 Sum_probs=244.4
Q ss_pred HHHHHHHHhhCCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHH
Q 007461 100 AYDYYNEAKKLPEFRPEKSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFI 179 (603)
Q Consensus 100 a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 179 (603)
|.-++.++.+. ++.+...|.+ |++...++.|..++.+.++. ++.+...|.+....=-.+|+.+...+++++-.
T Consensus 395 arilL~rAvec--cp~s~dLwlA----larLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl 467 (913)
T KOG0495|consen 395 ARILLERAVEC--CPQSMDLWLA----LARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGL 467 (913)
T ss_pred HHHHHHHHHHh--ccchHHHHHH----HHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 66666666654 2334444433 44455566777777766654 45566666665555555666666655555422
Q ss_pred ----hcCC-cchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCC--ChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 007461 180 ----TDGE-IALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVL--DSGCYCQIMEAYYKIGDSEKVAALFLECKSRKL 252 (603)
Q Consensus 180 ----~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 252 (603)
..+. .+...|..=...|-+.|..-.+..+....+..|+.- -..||..-...|.+.+.++-|+.+|....+-.+
T Consensus 468 ~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp 547 (913)
T KOG0495|consen 468 SELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFP 547 (913)
T ss_pred HHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhcc
Confidence 2222 355555555555555555555555555555555432 123555555556666666666666655544433
Q ss_pred CCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHH
Q 007461 253 DSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEKGILEDPSIYASLICSFASITEVKLAEELFKEAEEKGMLRDPEVC 332 (603)
Q Consensus 253 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 332 (603)
.. ...|...+..--..|..++-..+|++.... ++-....|.......-..|++..|+.++..+.+.... +..+|
T Consensus 548 ~k----~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiw 621 (913)
T KOG0495|consen 548 CK----KSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIW 621 (913)
T ss_pred ch----hHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHH
Confidence 22 234555555555555555555555555543 1112233333334444455555555555555554422 44555
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHh
Q 007461 333 LKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPG-QVTYASIINAYCR 411 (603)
Q Consensus 333 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~ 411 (603)
.+-+.......+++.|..+|.+..... ++..+|.--+..---.+..++|++++++..+. -|+ ...|..+.+.+-+
T Consensus 622 laavKle~en~e~eraR~llakar~~s--gTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~ 697 (913)
T KOG0495|consen 622 LAAVKLEFENDELERARDLLAKARSIS--GTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQ 697 (913)
T ss_pred HHHHHHhhccccHHHHHHHHHHHhccC--CcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHH
Confidence 555555555555555555555554432 33344444444444455555555555554443 122 2234444445555
Q ss_pred cCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHH
Q 007461 412 IALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKL 491 (603)
Q Consensus 412 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~ 491 (603)
.++++.|...|..-.+. ++..+..|-.|.+.=-+.|.+-+|..++++..-++ +-|...|-..|+.-.+.|+.+.|..+
T Consensus 698 ~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~l 775 (913)
T KOG0495|consen 698 MENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELL 775 (913)
T ss_pred HHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHH
Confidence 55555555555443332 23344445555555455555555555555554432 23444555555555555555555544
Q ss_pred HHHHHhC-----------------------------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 007461 492 WKEMERR-----------------------------KVTPDKVSYTTVISAYNRAREFDMCVKFYNEFRMNGGVIDRAIA 542 (603)
Q Consensus 492 ~~~m~~~-----------------------------~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 542 (603)
..+.++. ...-|......+...+....++++|.+.|.+.++.+.. ...+|
T Consensus 776 makALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d-~GD~w 854 (913)
T KOG0495|consen 776 MAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPD-NGDAW 854 (913)
T ss_pred HHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCc-cchHH
Confidence 4433321 11234555666667777788999999999999986533 34678
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhC
Q 007461 543 GIMVGVFSKLSQIEELVKLLQDMKSE 568 (603)
Q Consensus 543 ~~l~~~~~~~g~~~~A~~~~~~m~~~ 568 (603)
.-+...+.+.|.-++-.+++.+....
T Consensus 855 a~fykfel~hG~eed~kev~~~c~~~ 880 (913)
T KOG0495|consen 855 AWFYKFELRHGTEEDQKEVLKKCETA 880 (913)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 88888999999888888888887754
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.3e-11 Score=113.09 Aligned_cols=450 Identities=10% Similarity=0.030 Sum_probs=334.8
Q ss_pred CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHH
Q 007461 114 RPEKSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAM 193 (603)
Q Consensus 114 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 193 (603)
+.+...|-.-.+-=...+++..|.++|+....-+ ..+...|.--+..=.++..+..|+.+++.....-|.-...|-..+
T Consensus 70 R~~~~~WikYaqwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ 148 (677)
T KOG1915|consen 70 RLNMQVWIKYAQWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYI 148 (677)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHH
Confidence 4456666666666667788899999999988665 556667777778778888999999999998877665556676677
Q ss_pred hhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccC
Q 007461 194 GGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSG 273 (603)
Q Consensus 194 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 273 (603)
..--..|+...|.++|++-.+ ..|+...|.+.++.-.+...++.|..+++...--.+ ++..|--....=.+.|
T Consensus 149 ymEE~LgNi~gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP-----~v~~wikyarFE~k~g 221 (677)
T KOG1915|consen 149 YMEEMLGNIAGARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHP-----KVSNWIKYARFEEKHG 221 (677)
T ss_pred HHHHHhcccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecc-----cHHHHHHHHHHHHhcC
Confidence 777778999999999998876 478999999999999999999999999998765443 3567888888888999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH----HccCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCHHHH
Q 007461 274 RAFEALKFFRDMKEKGILEDPSIYASLICSF----ASITEVKLAEELFKEAEEKGMLR-DPEVCLKLVLMYIEEGLVEKT 348 (603)
Q Consensus 274 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~----~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a 348 (603)
....|..+|....+. ..|...-..++.++ .+...++.|.-+++.+++.-... ....|..+...--+-|+....
T Consensus 222 ~~~~aR~VyerAie~--~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gI 299 (677)
T KOG1915|consen 222 NVALARSVYERAIEF--LGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGI 299 (677)
T ss_pred cHHHHHHHHHHHHHH--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhh
Confidence 999999999888764 22333333344444 35678899999999988763221 145666666665666765544
Q ss_pred HHH--------HHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-------HHHHHHHHH---H
Q 007461 349 LDV--------VESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQV-------TYASIINAY---C 410 (603)
Q Consensus 349 ~~~--------~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-------~~~~ll~~~---~ 410 (603)
.+. ++.+...++ .|-.+|--.+..-...|+.+...++|++.+.. ++|-.. .|.-+--+| .
T Consensus 300 Ed~Iv~KRk~qYE~~v~~np-~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEl 377 (677)
T KOG1915|consen 300 EDAIVGKRKFQYEKEVSKNP-YNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEEL 377 (677)
T ss_pred HHHHhhhhhhHHHHHHHhCC-CCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 433 344455554 46667877888888889999999999999875 344221 222221222 3
Q ss_pred hcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHH----HccCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHH
Q 007461 411 RIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMY----GKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLR 486 (603)
Q Consensus 411 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~----~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 486 (603)
...+++.+.++|+...+. ++....||.-+=-+| .++.++..|.+++..... ..|-..++...|..-.+.++++
T Consensus 378 e~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG--~cPK~KlFk~YIelElqL~efD 454 (677)
T KOG1915|consen 378 EAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIG--KCPKDKLFKGYIELELQLREFD 454 (677)
T ss_pred HhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhc--cCCchhHHHHHHHHHHHHhhHH
Confidence 568899999999999884 566666666554444 467889999999988775 4889999999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 007461 487 QVEKLWKEMERRKVTPDKVSYTTVISAYNRAREFDMCVKFYNEFRMNGG-VIDRAIAGIMVGVFSKLSQIEELVKLLQDM 565 (603)
Q Consensus 487 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 565 (603)
.+.+++++.++.+.. |..+|.-....=...|+.+.|..+|+-++.... ......|...|+.-...|.++.|..+++++
T Consensus 455 RcRkLYEkfle~~Pe-~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerl 533 (677)
T KOG1915|consen 455 RCRKLYEKFLEFSPE-NCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERL 533 (677)
T ss_pred HHHHHHHHHHhcChH-hhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHH
Confidence 999999999976533 667788777777788999999999999987632 233457888888888999999999999999
Q ss_pred HhCCCCCCHHHHHHHH
Q 007461 566 KSEGTKLDERLYHSAM 581 (603)
Q Consensus 566 ~~~g~~~~~~~~~~ll 581 (603)
++.. +...+|.+..
T Consensus 534 L~rt--~h~kvWisFA 547 (677)
T KOG1915|consen 534 LDRT--QHVKVWISFA 547 (677)
T ss_pred HHhc--ccchHHHhHH
Confidence 8762 3333454443
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.8e-11 Score=113.86 Aligned_cols=437 Identities=10% Similarity=0.017 Sum_probs=330.6
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 007461 151 DAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEA 230 (603)
Q Consensus 151 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 230 (603)
+...|..-..-=...+++..|+.+|+..+..+..+...|...+..-.++..+..|..++++.+..=+..|. .|--.+.+
T Consensus 72 ~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdq-lWyKY~ym 150 (677)
T KOG1915|consen 72 NMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQ-LWYKYIYM 150 (677)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHH-HHHHHHHH
Confidence 33344333333345677889999999999988899999999999999999999999999998875333232 34445555
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCH
Q 007461 231 YYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEKGILEDPSIYASLICSFASITEV 310 (603)
Q Consensus 231 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~ 310 (603)
--..|++..|.++|+...+..+ +..+|++.|+.=.+-+..+.|..+|++..-. .|+..+|......-.+.|++
T Consensus 151 EE~LgNi~gaRqiferW~~w~P-----~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~ 223 (677)
T KOG1915|consen 151 EEMLGNIAGARQIFERWMEWEP-----DEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNV 223 (677)
T ss_pred HHHhcccHHHHHHHHHHHcCCC-----cHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcH
Confidence 6678999999999998876544 3478999999999999999999999998764 69999999888888899999
Q ss_pred HHHHHHHHHHHHc-C-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC-HhhHHHHHHHHHhcCC---HHHHH
Q 007461 311 KLAEELFKEAEEK-G-MLRDPEVCLKLVLMYIEEGLVEKTLDVVESMKNAKLKIS-DCISCAIVNGFSKRRG---YWAAV 384 (603)
Q Consensus 311 ~~a~~~~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~---~~~a~ 384 (603)
..++.+++.+.+. | -..+...+.++...-.++..++.|.-+|.-..+.-++-. ...|..+...=-+-|+ .++++
T Consensus 224 ~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~I 303 (677)
T KOG1915|consen 224 ALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAI 303 (677)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHH
Confidence 9999999998875 2 112345666777777788899999999998887654322 2223333332233444 34443
Q ss_pred H-----HHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCH--hhHHHHHH-----HH---HccCC
Q 007461 385 K-----VYEQLISQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQKGFDKCV--VAYSSMVA-----MY---GKTGR 449 (603)
Q Consensus 385 ~-----~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~li~-----~~---~~~g~ 449 (603)
- -|+.+.+.+ +-|-.++-..+..-...|+.+...++|+..+.. ++|-. ..|.-.|- ++ ....+
T Consensus 304 v~KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed 381 (677)
T KOG1915|consen 304 VGKRKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAED 381 (677)
T ss_pred hhhhhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 2 234444443 456667777777778889999999999999876 35521 12222221 11 24688
Q ss_pred HHHHHHHHHHHHHcCCCCCHhHHHHHHHHH----HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 007461 450 IRDAMWLVAKMKAKGCEPNVWIYNSLMDMH----GRAKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNRAREFDMCVK 525 (603)
Q Consensus 450 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~----~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 525 (603)
++.+.++++..++. ++....|+.-+--.| .++.++..|.+++-..+ |.-|...+|...|..=.+.+++|.+..
T Consensus 382 ~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRk 458 (677)
T KOG1915|consen 382 VERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRK 458 (677)
T ss_pred HHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHH
Confidence 99999999999984 455566665554444 46889999999999998 778999999999999999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCcHHHHHHHHhhcc
Q 007461 526 FYNEFRMNGGVIDRAIAGIMVGVFSKLSQIEELVKLLQDMKSEGT-KLDERLYHSAMNALRDAGLQMQAQWLQQNFE 601 (603)
Q Consensus 526 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~-~~~~~~~~~ll~a~~~~g~~~~a~~~~~~~~ 601 (603)
++++.++-++. +..+|......-...|+.+.|..+|+-.+++.. ......|.+.++-=...|.++.|+.+++++-
T Consensus 459 LYEkfle~~Pe-~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL 534 (677)
T KOG1915|consen 459 LYEKFLEFSPE-NCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLL 534 (677)
T ss_pred HHHHHHhcChH-hhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHH
Confidence 99999997544 667888888888889999999999999988742 2335677788887789999999999999863
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.1e-13 Score=125.61 Aligned_cols=185 Identities=9% Similarity=0.050 Sum_probs=146.6
Q ss_pred HhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHH
Q 007461 410 CRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVE 489 (603)
Q Consensus 410 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~ 489 (603)
...|++++|.+.+++.......-....|| +.-.+-+.|+.++|++.|-++..- +..+..+.-.+...|....+..+|+
T Consensus 501 f~ngd~dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqai 578 (840)
T KOG2003|consen 501 FANGDLDKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAI 578 (840)
T ss_pred eecCcHHHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHH
Confidence 34689999999999988765333333343 344567789999999999887653 3457777788888999999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCC
Q 007461 490 KLWKEMERRKVTPDKVSYTTVISAYNRAREFDMCVKFYNEFRMNGGVIDRAIAGIMVGVFSKLSQIEELVKLLQDMKSEG 569 (603)
Q Consensus 490 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 569 (603)
+++-+.... ++.|+..+.-|...|-+.|+-..|...+-+--+ .+..+..+..-|...|....-+++++.+|++.. =
T Consensus 579 e~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyr-yfp~nie~iewl~ayyidtqf~ekai~y~ekaa--l 654 (840)
T KOG2003|consen 579 ELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR-YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAA--L 654 (840)
T ss_pred HHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhccc-ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHH--h
Confidence 999888743 555677899999999999999999887654332 244577788888888889999999999999876 4
Q ss_pred CCCCHHHHHHHHHHH-HhcCcHHHHHHHHhhc
Q 007461 570 TKLDERLYHSAMNAL-RDAGLQMQAQWLQQNF 600 (603)
Q Consensus 570 ~~~~~~~~~~ll~a~-~~~g~~~~a~~~~~~~ 600 (603)
+.|+..-|..++.+| ++.|++.+|..+++.+
T Consensus 655 iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~ 686 (840)
T KOG2003|consen 655 IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDI 686 (840)
T ss_pred cCccHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 689999999999776 5789999999999875
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.7e-12 Score=125.97 Aligned_cols=284 Identities=9% Similarity=0.041 Sum_probs=178.1
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHHcCCHHHHH
Q 007461 272 SGRAFEALKFFRDMKEKGILEDPSIYASLICSFASITEVKLAEELFKEAEEKGMLRDPE--VCLKLVLMYIEEGLVEKTL 349 (603)
Q Consensus 272 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~a~ 349 (603)
.|+++.|.+.+....+.+-.| ...|.....+..+.|+.+.+.+.+.++.+.. |+.. ........+...|++++|.
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p-~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~--~~~~~~~~l~~a~l~l~~g~~~~Al 173 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQP-VVNYLLAAEAAQQRGDEARANQHLERAAELA--DNDQLPVEITRVRIQLARNENHAAR 173 (398)
T ss_pred CCCHHHHHHHHHHHHhcccch-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHCCCHHHHH
Confidence 466666665555443321111 1122222333356666666666666665542 3322 2223355666677777777
Q ss_pred HHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHhcCChHHHHHHH
Q 007461 350 DVVESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQ-------VTYASIINAYCRIALYSKAEKVF 422 (603)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-------~~~~~ll~~~~~~g~~~~a~~~~ 422 (603)
+.++.+.+.++. +......+...|.+.|++++|.+++..+.+.+..++. .+|..++.......+.+...+++
T Consensus 174 ~~l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w 252 (398)
T PRK10747 174 HGVDKLLEVAPR-HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWW 252 (398)
T ss_pred HHHHHHHhcCCC-CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 777776666643 4455666667777777777777777777765543222 12333333333444555666666
Q ss_pred HHHHHcCCCcCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 007461 423 IEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTP 502 (603)
Q Consensus 423 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p 502 (603)
+.+.+. .+.++.....+...+.+.|+.++|.+++++..+. .|+.... ++.+....++.+++.+..+...+.. +-
T Consensus 253 ~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~-P~ 326 (398)
T PRK10747 253 KNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQH-GD 326 (398)
T ss_pred HhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhC-CC
Confidence 665443 2556777788888888888888888888888774 4554322 2334445588888888888887653 22
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 007461 503 DKVSYTTVISAYNRAREFDMCVKFYNEFRMNGGVIDRAIAGIMVGVFSKLSQIEELVKLLQDMKS 567 (603)
Q Consensus 503 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 567 (603)
|...+..+...|.+.|++++|.+.|+.+.+. .|+...+..+...+.+.|+.++|.+++++...
T Consensus 327 ~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 327 TPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4455778888888888888888888888774 57777777888888888888888888887654
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.63 E-value=9.5e-12 Score=116.18 Aligned_cols=219 Identities=9% Similarity=0.060 Sum_probs=117.7
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHH
Q 007461 340 IEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIALYSKAE 419 (603)
Q Consensus 340 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~ 419 (603)
.-+|+.-.|..-|+.....+..++. .|-.+...|....+.++-.+.|.+..+.+ +-|+.+|..-.+...-.+++++|.
T Consensus 337 fL~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~ 414 (606)
T KOG0547|consen 337 FLKGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAI 414 (606)
T ss_pred hhcCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHH
Confidence 3345555566666665555543332 24445555566666666666666655543 234444555555555556666666
Q ss_pred HHHHHHHHcCCCcCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 007461 420 KVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEMERRK 499 (603)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 499 (603)
.=|++.+... +-+...|-.+--+..|.+++++++..|++.+++ ++.-+..|+.....+...+++++|.+.|+..++.
T Consensus 415 aDF~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L- 491 (606)
T KOG0547|consen 415 ADFQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL- 491 (606)
T ss_pred HHHHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh-
Confidence 6666655543 334445555555555566666666666666554 4444556666666666666666666666665532
Q ss_pred CCCC-------H--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 007461 500 VTPD-------K--VSYTTVISAYNRAREFDMCVKFYNEFRMNGGVIDRAIAGIMVGVFSKLSQIEELVKLLQDMK 566 (603)
Q Consensus 500 ~~p~-------~--~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 566 (603)
.|+ . ..--.++ .+...+++..|.+++++..+.+.+ ....|..|...-.+.|+.++|+++|++..
T Consensus 492 -E~~~~~~~v~~~plV~Ka~l-~~qwk~d~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 492 -EPREHLIIVNAAPLVHKALL-VLQWKEDINQAENLLRKAIELDPK-CEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred -ccccccccccchhhhhhhHh-hhchhhhHHHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 222 1 1111111 112336666666666666664333 22345566666666666666666666554
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.8e-12 Score=126.68 Aligned_cols=289 Identities=10% Similarity=0.039 Sum_probs=181.6
Q ss_pred ccCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 007461 271 KSGRAFEALKFFRDMKEKGILEDP-SIYASLICSFASITEVKLAEELFKEAEEKGMLRDPEVCLKLVLMYIEEGLVEKTL 349 (603)
Q Consensus 271 ~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 349 (603)
..|+++.|.+.+.+..+. .|+. ..+-....+....|+.+.+.+.+..+.+....+...+.......+...|++++|.
T Consensus 96 ~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred hCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 467777777777666554 3332 2333344555667777777777777765432222234444567777778888888
Q ss_pred HHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH-HHHHHH---HhcCChHHHHHHHHHH
Q 007461 350 DVVESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYA-SIINAY---CRIALYSKAEKVFIEM 425 (603)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~-~ll~~~---~~~g~~~~a~~~~~~~ 425 (603)
+.++.+.+..+. +..++..+...+.+.|++++|.+.+..+.+.+.. +...+. .-..++ ...+..+++.+.+..+
T Consensus 174 ~~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~ 251 (409)
T TIGR00540 174 HGVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLNW 251 (409)
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 888877777653 4456777777788888888888888887777643 222221 111111 2222223333344444
Q ss_pred HHcC---CCcCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhH---HHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 007461 426 QQKG---FDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWI---YNSLMDMHGRAKNLRQVEKLWKEMERRK 499 (603)
Q Consensus 426 ~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~---~~~li~~~~~~g~~~~a~~~~~~m~~~~ 499 (603)
.+.. .+.+...+..+...+...|+.++|.+++++..+. .||... ...........++.+.+.+.++...+.
T Consensus 252 ~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~- 328 (409)
T TIGR00540 252 WKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN- 328 (409)
T ss_pred HHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh-
Confidence 4332 1236778888888888888888888888888875 344331 111112223346777788887777654
Q ss_pred CCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 007461 500 VTPDK---VSYTTVISAYNRAREFDMCVKFYNEFRMNGGVIDRAIAGIMVGVFSKLSQIEELVKLLQDMKS 567 (603)
Q Consensus 500 ~~p~~---~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 567 (603)
.|+. ....++...|.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++...
T Consensus 329 -~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 329 -VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred -CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3333 445677788888888888888888544444567777777888888888888888888887543
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.7e-12 Score=127.73 Aligned_cols=288 Identities=11% Similarity=0.046 Sum_probs=214.6
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHH
Q 007461 306 SITEVKLAEELFKEAEEKGMLRDP-EVCLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRRGYWAAV 384 (603)
Q Consensus 306 ~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 384 (603)
..|+++.|++.+....+.. |++ ..+-.....+...|+.+.|.+.+.+..+..+.+.....-.....+...|+++.|.
T Consensus 96 ~~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred hCCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 5799999999998887754 443 3344556778889999999999999877654433334444578888999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHH-HHHHHH---HccCCHHHHHHHHHHH
Q 007461 385 KVYEQLISQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYS-SMVAMY---GKTGRIRDAMWLVAKM 460 (603)
Q Consensus 385 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-~li~~~---~~~g~~~~A~~~~~~m 460 (603)
..++.+.+.. +-+...+..+...+...|++++|.+++..+.+.+..+ ...+. .-..++ ...+..+++.+.+..+
T Consensus 174 ~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~-~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~ 251 (409)
T TIGR00540 174 HGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFD-DEEFADLEQKAEIGLLDEAMADEGIDGLLNW 251 (409)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 9999999876 3456678889999999999999999999999987433 33332 111111 2223333333455554
Q ss_pred HHcC---CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 007461 461 KAKG---CEPNVWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDKVS---YTTVISAYNRAREFDMCVKFYNEFRMNG 534 (603)
Q Consensus 461 ~~~~---~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~---~~~li~~~~~~g~~~~a~~~~~~~~~~~ 534 (603)
.+.. .+.+...+..+...+...|+.++|.+++++..+. .||... ...........++.+.+.+.++...+..
T Consensus 252 ~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~ 329 (409)
T TIGR00540 252 WKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV 329 (409)
T ss_pred HHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhC
Confidence 4431 1237888999999999999999999999999875 344432 1222222334578899999999888764
Q ss_pred CCCCH--HHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHhhc
Q 007461 535 GVIDR--AIAGIMVGVFSKLSQIEELVKLLQDMKSEGTKLDERLYHSAMNALRDAGLQMQAQWLQQNF 600 (603)
Q Consensus 535 ~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~a~~~~g~~~~a~~~~~~~ 600 (603)
.. |+ ....++.+.+.+.|++++|.+.|+........||...+.++...+.+.|+.++|.+++++-
T Consensus 330 p~-~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 330 DD-KPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred CC-ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 33 44 6678999999999999999999996444345799999999999999999999999999863
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=4.4e-12 Score=125.45 Aligned_cols=282 Identities=11% Similarity=0.030 Sum_probs=220.2
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHH-HHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHH
Q 007461 307 ITEVKLAEELFKEAEEKGMLRDPEVCLKL-VLMYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRRGYWAAVK 385 (603)
Q Consensus 307 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 385 (603)
.|+++.|++.+....+.. .++..+..+ .....+.|+++.|.+.+.++.+................+...|+++.|..
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 699999998888765542 234444433 44458999999999999999876554332222234678889999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCH-------hhHHHHHHHHHccCCHHHHHHHHH
Q 007461 386 VYEQLISQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQKGFDKCV-------VAYSSMVAMYGKTGRIRDAMWLVA 458 (603)
Q Consensus 386 ~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~ 458 (603)
.++++.+.. +-+...+..+...|.+.|++++|.+++..+.+.+..++. ..|..++.......+.+...++++
T Consensus 175 ~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~ 253 (398)
T PRK10747 175 GVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK 253 (398)
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 999999876 446677888999999999999999999999988644222 133344444445566677777777
Q ss_pred HHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 007461 459 KMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNRAREFDMCVKFYNEFRMNGGVID 538 (603)
Q Consensus 459 ~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 538 (603)
.+.+. .+.++.....+...+...|+.++|.+++++..+. .||... .++.+....++.+++.+..+...+.... |
T Consensus 254 ~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~P~-~ 327 (398)
T PRK10747 254 NQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQHGD-T 327 (398)
T ss_pred hCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--HHHHhhccCCChHHHHHHHHHHHhhCCC-C
Confidence 77554 3558888899999999999999999999999864 455532 2344445669999999999999987544 6
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHhh
Q 007461 539 RAIAGIMVGVFSKLSQIEELVKLLQDMKSEGTKLDERLYHSAMNALRDAGLQMQAQWLQQN 599 (603)
Q Consensus 539 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~a~~~~g~~~~a~~~~~~ 599 (603)
+..+..+...+.+.|++++|.+.|+.+.+. .|+...+..+..++.+.|+.++|.+++++
T Consensus 328 ~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~ 386 (398)
T PRK10747 328 PLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRD 386 (398)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 677889999999999999999999999965 69999999999999999999999999875
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.61 E-value=4.6e-12 Score=112.16 Aligned_cols=291 Identities=12% Similarity=0.071 Sum_probs=146.3
Q ss_pred CChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHH
Q 007461 166 RKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFL 245 (603)
Q Consensus 166 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 245 (603)
++.++|.++|-+|.+.++.+.++.-+|...|.+.|..++|+.+++.+.++ ||..
T Consensus 49 ~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT----------------------- 102 (389)
T COG2956 49 NQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLT----------------------- 102 (389)
T ss_pred cCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCc-----------------------
Confidence 45566666666666655555555666666666666666666666655553 2211
Q ss_pred HHHhCCCCCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCC
Q 007461 246 ECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEKGILEDPSIYASLICSFASITEVKLAEELFKEAEEKGM 325 (603)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 325 (603)
...-..+...|..-|...|-+|.|.++|..+.+.| .--......|+..|-...+|++|.++-+++.+.+-
T Consensus 103 ---------~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~ 172 (389)
T COG2956 103 ---------FEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGG 172 (389)
T ss_pred ---------hHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCC
Confidence 11111222333344444444444444444444332 11223344444444444555555554444444432
Q ss_pred CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 007461 326 LRD----PEVCLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQVT 401 (603)
Q Consensus 326 ~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~ 401 (603)
.+. ...|.-|...+....+++.|..++.+..+.+++ .+.+--.+.+.....|+++.|++.++...+.+..--..+
T Consensus 173 q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~ev 251 (389)
T COG2956 173 QTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEV 251 (389)
T ss_pred ccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHH
Confidence 221 112333444444445555555555555555442 222223344555566666666666666665543333345
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHh
Q 007461 402 YASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGR 481 (603)
Q Consensus 402 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 481 (603)
...+..+|.+.|+.++....+..+.+.. +....-..+.+.-....-.+.|...+.+-..+ +|+...+..+|.....
T Consensus 252 l~~L~~~Y~~lg~~~~~~~fL~~~~~~~--~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~ 327 (389)
T COG2956 252 LEMLYECYAQLGKPAEGLNFLRRAMETN--TGADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLA 327 (389)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHcc--CCccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhc
Confidence 5666667777777777777777666542 22333334444333344455555555444443 5777777777765443
Q ss_pred ---cCCHHHHHHHHHHHHh
Q 007461 482 ---AKNLRQVEKLWKEMER 497 (603)
Q Consensus 482 ---~g~~~~a~~~~~~m~~ 497 (603)
.|...+...+++.|+.
T Consensus 328 daeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 328 DAEEGRAKESLDLLRDMVG 346 (389)
T ss_pred cccccchhhhHHHHHHHHH
Confidence 3344555556666653
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.9e-10 Score=106.98 Aligned_cols=382 Identities=12% Similarity=0.108 Sum_probs=252.5
Q ss_pred cchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccHHHHH
Q 007461 184 IALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYK 263 (603)
Q Consensus 184 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 263 (603)
.|...+-.....+.+.|....|+..|...+.. -+..|..-+....-..+.+.+..+....... . ....=-
T Consensus 162 ~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~----~P~~W~AWleL~~lit~~e~~~~l~~~l~~~----~--h~M~~~ 231 (559)
T KOG1155|consen 162 KDEFLLYLYGVVLKELGLLSLAIDSFVEVVNR----YPWFWSAWLELSELITDIEILSILVVGLPSD----M--HWMKKF 231 (559)
T ss_pred chhHHHHHHHHHHHhhchHHHHHHHHHHHHhc----CCcchHHHHHHHHhhchHHHHHHHHhcCccc----c--hHHHHH
Confidence 34444444445566677788888888776653 1223444433333333333333322111110 0 001112
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHH
Q 007461 264 ILCDSLGKSGRAFEALKFFRDMKEKGILEDPSIYASLICSFASITEVKLAEELFKEAEEKGM--LRDPEVCLKLVLMYIE 341 (603)
Q Consensus 264 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~ 341 (603)
.+..++-...+.++++.-.+.+...|..-....-+....+.-...|+++|+.+|+++.+... .-|..+|..++..--.
T Consensus 232 F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~ 311 (559)
T KOG1155|consen 232 FLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKND 311 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhh
Confidence 23455555567788888888888777654444444444455577889999999999988742 1255667665543333
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 007461 342 EGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIALYSKAEKV 421 (603)
Q Consensus 342 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~ 421 (603)
+.++.---...-.+.+- -..|..++.+-|.-.++.++|+.+|++..+.+ +-....|+.+..-|....+...|.+-
T Consensus 312 ~skLs~LA~~v~~idKy----R~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~s 386 (559)
T KOG1155|consen 312 KSKLSYLAQNVSNIDKY----RPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIES 386 (559)
T ss_pred hHHHHHHHHHHHHhccC----CccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHH
Confidence 22222111111122222 22367888888899999999999999988865 33456778888889999999999999
Q ss_pred HHHHHHcCCCcCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 007461 422 FIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVT 501 (603)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 501 (603)
++...+.. +.|-..|-.|.++|.-.+.+.-|+-.|++..+. -+.|...|.+|..+|.+.++.++|++.|++....| .
T Consensus 387 YRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~-kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-d 463 (559)
T KOG1155|consen 387 YRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALEL-KPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-D 463 (559)
T ss_pred HHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhc-CCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-c
Confidence 99999875 778889999999999999999999999998875 24588999999999999999999999999988765 2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCCHHHH---HHHHHHHHccCCHHHHHHHHHHHHhCCCCCCH
Q 007461 502 PDKVSYTTVISAYNRAREFDMCVKFYNEFRMN----GGVIDRAIA---GIMVGVFSKLSQIEELVKLLQDMKSEGTKLDE 574 (603)
Q Consensus 502 p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~---~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~ 574 (603)
.+...+..|.+.|-+.++.++|...|++.++. |.. +..+. --|...+.+.+++++|......... | .+..
T Consensus 464 te~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~-~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~-~-~~e~ 540 (559)
T KOG1155|consen 464 TEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEI-DDETIKARLFLAEYFKKMKDFDEASYYATLVLK-G-ETEC 540 (559)
T ss_pred cchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccc-chHHHHHHHHHHHHHHhhcchHHHHHHHHHHhc-C-CchH
Confidence 35578899999999999999999999887653 222 22221 2255677788888888876655543 2 4444
Q ss_pred HHHHHHHHHHHh
Q 007461 575 RLYHSAMNALRD 586 (603)
Q Consensus 575 ~~~~~ll~a~~~ 586 (603)
.--..|++-+++
T Consensus 541 eeak~LlReir~ 552 (559)
T KOG1155|consen 541 EEAKALLREIRK 552 (559)
T ss_pred HHHHHHHHHHHH
Confidence 555555555544
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.59 E-value=9.9e-15 Score=137.92 Aligned_cols=259 Identities=15% Similarity=0.147 Sum_probs=67.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcC
Q 007461 122 LLIRYLVQSKKWDSIVSLSEDFKIYN-VLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLH 200 (603)
Q Consensus 122 ~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 200 (603)
.+...+.+.|++++|+++++...... .+.+..-|..+...+...++++.|+..++++...++.++..+..++.. ...+
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccc
Confidence 44666667777777777775433332 123334444444455556667777777777766655555566666655 5666
Q ss_pred cHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccCCHHHHHH
Q 007461 201 MYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALK 280 (603)
Q Consensus 201 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 280 (603)
++++|.++++...+.. ++...+...+..+.+.++++++.++++.+...... +.+...|..+...+.+.|+.++|++
T Consensus 92 ~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~~a~~~~~~G~~~~A~~ 167 (280)
T PF13429_consen 92 DPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAA--PDSARFWLALAEIYEQLGDPDKALR 167 (280)
T ss_dssp ----------------------------H-HHHTT-HHHHHHHHHHHHH-T-----T-HHHHHHHHHHHHHCCHHHHHHH
T ss_pred cccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCC--CCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 6666666666554432 34445555666666666666666666665542211 1234455566666666666666666
Q ss_pred HHHHHHHCCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 007461 281 FFRDMKEKGILE-DPSIYASLICSFASITEVKLAEELFKEAEEKGMLRDPEVCLKLVLMYIEEGLVEKTLDVVESMKNAK 359 (603)
Q Consensus 281 ~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 359 (603)
.|++..+. .| |......++..+...|+.+++.++++...+.. +.|+..+..+..+|...|+.++|...|++....+
T Consensus 168 ~~~~al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~ 244 (280)
T PF13429_consen 168 DYRKALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN 244 (280)
T ss_dssp HHHHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc
Confidence 66666554 33 34445555555555555555555555554432 2233344444444555555555555554444433
Q ss_pred CCCCHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 007461 360 LKISDCISCAIVNGFSKRRGYWAAVKVYEQ 389 (603)
Q Consensus 360 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 389 (603)
+ .|..+...+..++...|+.++|.++.++
T Consensus 245 p-~d~~~~~~~a~~l~~~g~~~~A~~~~~~ 273 (280)
T PF13429_consen 245 P-DDPLWLLAYADALEQAGRKDEALRLRRQ 273 (280)
T ss_dssp T-T-HHHHHHHHHHHT--------------
T ss_pred c-cccccccccccccccccccccccccccc
Confidence 2 1333333444444444444444444433
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.3e-11 Score=113.63 Aligned_cols=415 Identities=14% Similarity=0.086 Sum_probs=261.6
Q ss_pred hHHHHHHhcCCCChHHHHHHHHHHhhCCCCCCC-HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 007461 84 DSFLHGMLKDPQTQELAYDYYNEAKKLPEFRPE-KSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASC 162 (603)
Q Consensus 84 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 162 (603)
...-..+.+++.+.+ |+++|.++++. .|+ +..|.....+|...|+|+.+.+-..+..+.+ +.-+.++..-.+++
T Consensus 119 K~~GN~~f~~kkY~e-AIkyY~~AI~l---~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~-P~Y~KAl~RRA~A~ 193 (606)
T KOG0547|consen 119 KTKGNKFFRNKKYDE-AIKYYTQAIEL---CPDEPIFYSNRAACYESLGDWEKVIEDCTKALELN-PDYVKALLRRASAH 193 (606)
T ss_pred HhhhhhhhhcccHHH-HHHHHHHHHhc---CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcC-cHHHHHHHHHHHHH
Confidence 334455778888887 99999999976 677 7788899999999999999999888887765 23345666667777
Q ss_pred HccCChHHHHHHHHHHHhcCC-cchhhHHHHHhhhhhcCcHHHHHHHHHH-HHhCC--CCCChhhHHHHHHHHHHcCCHH
Q 007461 163 VRARKFKIANTLLQVFITDGE-IALLAFNSAMGGYNKLHMYYSTILVYEK-MKSAG--IVLDSGCYCQIMEAYYKIGDSE 238 (603)
Q Consensus 163 ~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~-m~~~~--~~p~~~~~~~ll~~~~~~g~~~ 238 (603)
-..|++++|+.=.....-.+. .+..+--.+=+.+-+ .|..-..+ +.+.+ +-|+.....+....+-.. +.
T Consensus 194 E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk-----~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~--~~ 266 (606)
T KOG0547|consen 194 EQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKK-----QAMKKAKEKLKENRPPVLPSATFIASYFGSFHAD--PK 266 (606)
T ss_pred HhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHH-----HHHHHHHHhhcccCCCCCCcHHHHHHHHhhcccc--cc
Confidence 777888777532222111111 111111111111111 11111111 22111 233333222222222100 00
Q ss_pred HHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhc-----cCCHHHHHHHHHHHHHC-CCCC-----CHH------HHHHHH
Q 007461 239 KVAALFLECKSRKLDSTPFSTHMYKILCDSLGK-----SGRAFEALKFFRDMKEK-GILE-----DPS------IYASLI 301 (603)
Q Consensus 239 ~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~-g~~p-----~~~------~~~~ll 301 (603)
.. .....+ .+...+..++.. ...+..|.+.+.+-... -..+ |.. +.....
T Consensus 267 ------~~---~~~~~~----ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~g 333 (606)
T KOG0547|consen 267 ------PL---FDNKSD----KSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRG 333 (606)
T ss_pred ------cc---ccCCCc----cchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhh
Confidence 00 000000 011111111110 01233333333221110 0001 111 111111
Q ss_pred HHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHH
Q 007461 302 CSFASITEVKLAEELFKEAEEKGMLRDPEVCLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRRGYW 381 (603)
Q Consensus 302 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 381 (603)
..+.-.|+...+.+-|+..++.... +...|-.+..+|....+.++-...|....+.++. +..+|..-...+.-.++++
T Consensus 334 tF~fL~g~~~~a~~d~~~~I~l~~~-~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e 411 (606)
T KOG0547|consen 334 TFHFLKGDSLGAQEDFDAAIKLDPA-FNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYE 411 (606)
T ss_pred hhhhhcCCchhhhhhHHHHHhcCcc-cchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHH
Confidence 1223468888999999999887643 3333777788899999999999999999998874 6668888888888899999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCCHHHHHHHHHHHH
Q 007461 382 AAVKVYEQLISQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMK 461 (603)
Q Consensus 382 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 461 (603)
+|+.=|++.++.. +-+...|.-+.-+..+.++++++...|++.+++ ++..+.+|+.....+...+++++|.+.|+..+
T Consensus 412 ~A~aDF~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai 489 (606)
T KOG0547|consen 412 EAIADFQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAI 489 (606)
T ss_pred HHHHHHHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHH
Confidence 9999999998764 345567777777778899999999999999887 68889999999999999999999999999987
Q ss_pred HcCCCCC-------H--hHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007461 462 AKGCEPN-------V--WIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDK-VSYTTVISAYNRAREFDMCVKFYNEFR 531 (603)
Q Consensus 462 ~~~~~p~-------~--~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~~~ 531 (603)
+. .|+ . .+--.++. +.-.+++..|.+++++.++. .|.. ..|..|...-.+.|+.++|+++|++..
T Consensus 490 ~L--E~~~~~~~v~~~plV~Ka~l~-~qwk~d~~~a~~Ll~KA~e~--Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 490 EL--EPREHLIIVNAAPLVHKALLV-LQWKEDINQAENLLRKAIEL--DPKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred hh--ccccccccccchhhhhhhHhh-hchhhhHHHHHHHHHHHHcc--CchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 64 333 1 11122221 22348999999999999965 4443 579999999999999999999999875
Q ss_pred H
Q 007461 532 M 532 (603)
Q Consensus 532 ~ 532 (603)
.
T Consensus 565 ~ 565 (606)
T KOG0547|consen 565 Q 565 (606)
T ss_pred H
Confidence 4
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.3e-11 Score=123.14 Aligned_cols=455 Identities=13% Similarity=0.085 Sum_probs=242.3
Q ss_pred CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHH
Q 007461 112 EFRPEKSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNS 191 (603)
Q Consensus 112 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 191 (603)
|+.|+..||..+|..|+..|+.+.|- +|.-|.....+.+...++.++.+....++.+.+. .|...+|..
T Consensus 20 gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk----------ep~aDtyt~ 88 (1088)
T KOG4318|consen 20 GILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK----------EPLADTYTN 88 (1088)
T ss_pred cCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------CCchhHHHH
Confidence 55666666666666666666666665 6666655555555556666665555555544332 345556666
Q ss_pred HHhhhhhcCcHHH---HHHHHHHHHh----CC-----------------CCCChhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 007461 192 AMGGYNKLHMYYS---TILVYEKMKS----AG-----------------IVLDSGCYCQIMEAYYKIGDSEKVAALFLEC 247 (603)
Q Consensus 192 l~~~~~~~~~~~~---a~~~~~~m~~----~~-----------------~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 247 (603)
|..+|.+.|+... ..+.++.+.. .| ..||.. ..+....-.|-++.+.+++..+
T Consensus 89 Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~---n~illlv~eglwaqllkll~~~ 165 (1088)
T KOG4318|consen 89 LLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAE---NAILLLVLEGLWAQLLKLLAKV 165 (1088)
T ss_pred HHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHH---HHHHHHHHHHHHHHHHHHHhhC
Confidence 6666666655432 2221111111 11 122221 2223333445555555555444
Q ss_pred HhCCCCCCCccHHHHHHHHHHHhccCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCC
Q 007461 248 KSRKLDSTPFSTHMYKILCDSLGKSGR-AFEALKFFRDMKEKGILEDPSIYASLICSFASITEVKLAEELFKEAEEKGML 326 (603)
Q Consensus 248 ~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 326 (603)
+...... + ...+++-...... +++-...-+...+ .|+..+|..++..-...|+++.|..++.+|.+.|++
T Consensus 166 Pvsa~~~-p-----~~vfLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfp 236 (1088)
T KOG4318|consen 166 PVSAWNA-P-----FQVFLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFP 236 (1088)
T ss_pred Ccccccc-h-----HHHHHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCC
Confidence 3222111 0 1111222222222 2222222222221 467777777777777777777777777777777776
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHH------------------------
Q 007461 327 RDPEVCLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRRGYWA------------------------ 382 (603)
Q Consensus 327 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~------------------------ 382 (603)
.+..-|-.|+-+ .++..-+..++..|.+.|+.|+..|+...+-.+..+|....
T Consensus 237 ir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~~ 313 (1088)
T KOG4318|consen 237 IRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGLL 313 (1088)
T ss_pred cccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhcccH
Confidence 666666665544 66666666677777777777777776655555544332211
Q ss_pred H------------HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc---CCCcCHhhHHHHHHHHHcc
Q 007461 383 A------------VKVYEQLISQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQK---GFDKCVVAYSSMVAMYGKT 447 (603)
Q Consensus 383 a------------~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~~~~~li~~~~~~ 447 (603)
| +..+.+..-.|+......|..... ....|.-++.+++-..+..- .-..++..|..++.-|.+.
T Consensus 314 a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~-l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyFrr 392 (1088)
T KOG4318|consen 314 ANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEK-LRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYFRR 392 (1088)
T ss_pred hHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHH-HHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHHHH
Confidence 1 111111111122222222222222 22345555555555554321 1112344444444444332
Q ss_pred CC----------------------HHHHHHHHHHHHHcCCCCC----------------------------HhHHHHHHH
Q 007461 448 GR----------------------IRDAMWLVAKMKAKGCEPN----------------------------VWIYNSLMD 477 (603)
Q Consensus 448 g~----------------------~~~A~~~~~~m~~~~~~p~----------------------------~~~~~~li~ 477 (603)
-+ ..+..+..... .|| ...-+.++-
T Consensus 393 ~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~l-----rkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l 467 (1088)
T KOG4318|consen 393 IERHICSRIYYAGQGLSLNLNSEDTPRVSELLENL-----RKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHL 467 (1088)
T ss_pred HHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHh-----CcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHH
Confidence 11 11111111111 122 112244444
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHccCCH
Q 007461 478 MHGRAKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNRAREFDMCVKFYNEFRMNG--GVIDRAIAGIMVGVFSKLSQI 555 (603)
Q Consensus 478 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~ 555 (603)
.++..-+..+++..-+.....-+ | ..|..||+-+......+.|..+.++..... ...|..-+..+.+.+.+.+..
T Consensus 468 ~l~se~n~lK~l~~~ekye~~lf-~--g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l 544 (1088)
T KOG4318|consen 468 TLNSEYNKLKILCDEEKYEDLLF-A--GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAIL 544 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh-h--hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHH
Confidence 55555555555544444332211 1 468899999999999999999999886543 335666788899999999999
Q ss_pred HHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCcHHHHHHHHhhcc
Q 007461 556 EELVKLLQDMKSEGTKL--DERLYHSAMNALRDAGLQMQAQWLQQNFE 601 (603)
Q Consensus 556 ~~A~~~~~~m~~~g~~~--~~~~~~~ll~a~~~~g~~~~a~~~~~~~~ 601 (603)
.++.++++++.+.-..- ...++..+++.....|+.+...++.+-+.
T Consensus 545 ~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lv 592 (1088)
T KOG4318|consen 545 YDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILV 592 (1088)
T ss_pred HHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHH
Confidence 99999999998853222 36778888899999999998888776554
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.7e-14 Score=136.34 Aligned_cols=224 Identities=12% Similarity=0.114 Sum_probs=58.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 007461 334 KLVLMYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIA 413 (603)
Q Consensus 334 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 413 (603)
.+.......++++.|.+.++++...+.. +...+..++.. ...+++++|.++++...+.. ++...+...+..+.+.+
T Consensus 49 ~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~ 124 (280)
T PF13429_consen 49 LLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLG 124 (280)
T ss_dssp -------------------------------------------------------------------------H-HHHTT
T ss_pred cccccccccccccccccccccccccccc-ccccccccccc-cccccccccccccccccccc--cccchhhHHHHHHHHHh
Confidence 3333334444444444444444433321 22223333333 34444444444444333221 23333344444444444
Q ss_pred ChHHHHHHHHHHHHcC-CCcCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHHhcCCHHHHHHH
Q 007461 414 LYSKAEKVFIEMQQKG-FDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEP-NVWIYNSLMDMHGRAKNLRQVEKL 491 (603)
Q Consensus 414 ~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~ 491 (603)
+++++.++++.+.... .+.+...|..+...+.+.|+.++|++.+++..+. .| |....+.++..+...|+.+++..+
T Consensus 125 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~ 202 (280)
T PF13429_consen 125 DYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALEL--DPDDPDARNALAWLLIDMGDYDEAREA 202 (280)
T ss_dssp -HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHCCChHHHHHH
Confidence 5555554444443221 2233444444444444455555555555544443 22 244444444444444544444444
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 007461 492 WKEMERRKVTPDKVSYTTVISAYNRAREFDMCVKFYNEFRMNGGVIDRAIAGIMVGVFSKLSQIEELVKLLQDM 565 (603)
Q Consensus 492 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 565 (603)
++...+.. +.|...+..+..+|...|+.++|+.++++..+.... |+.....+.+++...|+.++|.++.++.
T Consensus 203 l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~-d~~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 203 LKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPD-DPLWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp HHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT--HHHHHHHHHHHT---------------
T ss_pred HHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccccc-cccccccccccccccccccccccccccc
Confidence 44443321 223333444444444445555555555544443211 4444444444455555555554444433
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.56 E-value=2e-11 Score=108.26 Aligned_cols=225 Identities=14% Similarity=0.050 Sum_probs=131.7
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCc----chhhHHHHHhhhhhcCcHHHH
Q 007461 130 SKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEI----ALLAFNSAMGGYNKLHMYYST 205 (603)
Q Consensus 130 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a 205 (603)
+++.++|.++|-+|.+.+ +.+..+..+|.+.|.+.|..++|+.+.+.+...+.. ...+.-.|..-|...|-+++|
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 578999999999999754 455677888999999999999999999999876542 234555666777777888888
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCcc-HHHHHHHHHHHhccCCHHHHHHHHHH
Q 007461 206 ILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFS-THMYKILCDSLGKSGRAFEALKFFRD 284 (603)
Q Consensus 206 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~ 284 (603)
.++|..+.+.|.- -......|+..|-...+|++|+++-+++...+....... ...|-.|...+....+.+.|..++.+
T Consensus 127 E~~f~~L~de~ef-a~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~k 205 (389)
T COG2956 127 EDIFNQLVDEGEF-AEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKK 205 (389)
T ss_pred HHHHHHHhcchhh-hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 8888777764321 334566777777777777777777776666554432211 12233334444444455555555555
Q ss_pred HHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 007461 285 MKEKGILEDPSIYASLICSFASITEVKLAEELFKEAEEKGMLRDPEVCLKLVLMYIEEGLVEKTLDVVESMKN 357 (603)
Q Consensus 285 m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 357 (603)
..+...+ ....-..+.+.....|+++.|.+.++.+.+.+...-+.+...|..+|...|+.++....+..+.+
T Consensus 206 Alqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~ 277 (389)
T COG2956 206 ALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAME 277 (389)
T ss_pred HHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4443211 11122223333444444444444444444443333333444444444444444444444444433
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.7e-10 Score=105.75 Aligned_cols=287 Identities=10% Similarity=0.031 Sum_probs=208.1
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 007461 272 SGRAFEALKFFRDMKEKGILEDPSIYASLICSFASITEVKLAEELFKEAEEKGMLRDPEVCLKLVLMYIEEGLVEKTLDV 351 (603)
Q Consensus 272 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 351 (603)
.|+|..|+++..+-.+.+-.| ...|..-..+.-+.|+.+.+..++.++.+..-.++..+.-+........|+++.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 577788888777766655333 3345555556667788888888888887764455666777777788888888888888
Q ss_pred HHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-------HHHHHHHHHHhcCChHHHHHHHHH
Q 007461 352 VESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQV-------TYASIINAYCRIALYSKAEKVFIE 424 (603)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-------~~~~ll~~~~~~g~~~~a~~~~~~ 424 (603)
++++.+.++. +..+......+|.+.|++.+...++..|.+.|.-.+.. +|..+++-....+..+.-...++.
T Consensus 176 v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 176 VDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 8888877764 45577788888888888888888888888877654433 567777777666666666667766
Q ss_pred HHHcCCCcCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 007461 425 MQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDK 504 (603)
Q Consensus 425 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 504 (603)
..+. .+.++..-.+++.-+.++|+.++|.++.++..+++..|+.. ..-.+.+-++...-++..++-.+. .+-+.
T Consensus 255 ~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~----~~~~~l~~~d~~~l~k~~e~~l~~-h~~~p 328 (400)
T COG3071 255 QPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLC----RLIPRLRPGDPEPLIKAAEKWLKQ-HPEDP 328 (400)
T ss_pred ccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHH----HHHhhcCCCCchHHHHHHHHHHHh-CCCCh
Confidence 6554 34556666777888888899999988888888876666522 233455667777777777665543 22244
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 007461 505 VSYTTVISAYNRAREFDMCVKFYNEFRMNGGVIDRAIAGIMVGVFSKLSQIEELVKLLQDMKSE 568 (603)
Q Consensus 505 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 568 (603)
..+.+|...|.+.+.|.+|...|+...+ ..|+..+|+.+..+|.+.|+.++|.+..++....
T Consensus 329 ~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 329 LLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 6678888888888888888888887766 4678888888888888888888888888776643
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.9e-09 Score=100.47 Aligned_cols=362 Identities=12% Similarity=0.039 Sum_probs=260.3
Q ss_pred CCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCH
Q 007461 215 AGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEKGILEDP 294 (603)
Q Consensus 215 ~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 294 (603)
.+...|...+-.....+.+.|....|+..|.......+-.+ .+|-.|.... .+.+ ....+.. |...|.
T Consensus 158 ~~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W----~AWleL~~li---t~~e----~~~~l~~-~l~~~~ 225 (559)
T KOG1155|consen 158 CGGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFW----SAWLELSELI---TDIE----ILSILVV-GLPSDM 225 (559)
T ss_pred hcccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcch----HHHHHHHHhh---chHH----HHHHHHh-cCcccc
Confidence 34455666666666677788999999999988876654432 2444444333 2222 2222221 222222
Q ss_pred HHH--HHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC--CCHhhHHHH
Q 007461 295 SIY--ASLICSFASITEVKLAEELFKEAEEKGMLRDPEVCLKLVLMYIEEGLVEKTLDVVESMKNAKLK--ISDCISCAI 370 (603)
Q Consensus 295 ~~~--~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~l 370 (603)
..+ --+..++-...+.+++.+-.......|++.+...-+....+.....++++|+.+|+++...++- -|..+|+.+
T Consensus 226 h~M~~~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~ 305 (559)
T KOG1155|consen 226 HWMKKFFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNV 305 (559)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHH
Confidence 211 2234556666688888888888888888878877777788888899999999999999988652 244556555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCCH
Q 007461 371 VNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRI 450 (603)
Q Consensus 371 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 450 (603)
+-.- +.+ ..+.++.+-...--+--+.|..++.+.|+-.++.++|...|++..+.+ +.....|+.+.+-|....+.
T Consensus 306 LYv~--~~~--skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt 380 (559)
T KOG1155|consen 306 LYVK--NDK--SKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNT 380 (559)
T ss_pred HHHH--hhh--HHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhccc
Confidence 4332 221 112222221111112334677888899999999999999999999986 56678999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007461 451 RDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNRAREFDMCVKFYNEF 530 (603)
Q Consensus 451 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 530 (603)
..|.+-++...+- .+-|-..|-.|.++|...+.+.-|+-.|++..+.. +-|...|.+|..+|.+.++.++|++-|...
T Consensus 381 ~AAi~sYRrAvdi-~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykra 458 (559)
T KOG1155|consen 381 HAAIESYRRAVDI-NPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRA 458 (559)
T ss_pred HHHHHHHHHHHhc-CchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 9999999999986 35589999999999999999999999999998653 336788999999999999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh----CCCCCCHHHHHH--HHHHHHhcCcHHHHHHH
Q 007461 531 RMNGGVIDRAIAGIMVGVFSKLSQIEELVKLLQDMKS----EGTKLDERLYHS--AMNALRDAGLQMQAQWL 596 (603)
Q Consensus 531 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~----~g~~~~~~~~~~--ll~a~~~~g~~~~a~~~ 596 (603)
...|-. +...+..|.+.|-+.++.++|...+++-++ .|...+...... |..-+.+.+++++|...
T Consensus 459 i~~~dt-e~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Y 529 (559)
T KOG1155|consen 459 ILLGDT-EGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYY 529 (559)
T ss_pred Hhcccc-chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHH
Confidence 887543 668899999999999999999999887665 354444222222 22345677777777653
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.53 E-value=4e-08 Score=95.47 Aligned_cols=500 Identities=13% Similarity=0.092 Sum_probs=303.8
Q ss_pred hhHHHHHHhcCCCChHHHHHHHHHHhhCCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC------CCCCHHHHH
Q 007461 83 FDSFLHGMLKDPQTQELAYDYYNEAKKLPEFRPEKSTLKLLIRYLVQSKKWDSIVSLSEDFKIYN------VLPDAHTCS 156 (603)
Q Consensus 83 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~ 156 (603)
|...|.-+...+-. +-++.+|++-++. ++..-+--|..+++.+++++|.+.+....... .+.+-..|.
T Consensus 141 W~lyl~Fv~~~~lP-ets~rvyrRYLk~-----~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~ 214 (835)
T KOG2047|consen 141 WDLYLKFVESHGLP-ETSIRVYRRYLKV-----APEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWL 214 (835)
T ss_pred hHHHHHHHHhCCCh-HHHHHHHHHHHhc-----CHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHH
Confidence 44444444434333 3367777666543 33446666777778888888888777765321 134455666
Q ss_pred HHHHHHHccCChHH---HHHHHHHHHhcCC-cchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 007461 157 RLVASCVRARKFKI---ANTLLQVFITDGE-IALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYY 232 (603)
Q Consensus 157 ~ll~~~~~~~~~~~---a~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 232 (603)
.+-+..++..+.-. ...+++.....-. .-...|++|.+-|.+.|.+++|..+|++..+. ...+.-|..+.++|+
T Consensus 215 elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya 292 (835)
T KOG2047|consen 215 ELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYA 292 (835)
T ss_pred HHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHH
Confidence 66666655543322 2223333222211 12357889999999999999999999887764 223344555555555
Q ss_pred HcC----------------------CHHHHHHHHHHHHhCCCC--------CCCccHHHHHHHHHHHhccCCHHHHHHHH
Q 007461 233 KIG----------------------DSEKVAALFLECKSRKLD--------STPFSTHMYKILCDSLGKSGRAFEALKFF 282 (603)
Q Consensus 233 ~~g----------------------~~~~a~~~~~~~~~~~~~--------~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 282 (603)
.-. +++-...-|+.+..+.+. .++.++..|..-+. +..|+..+-...|
T Consensus 293 ~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~ty 370 (835)
T KOG2047|consen 293 QFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTY 370 (835)
T ss_pred HHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHH
Confidence 321 233334445544433321 12234445544443 3356777888888
Q ss_pred HHHHHCCCCCC------HHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHH
Q 007461 283 RDMKEKGILED------PSIYASLICSFASITEVKLAEELFKEAEEKGMLRD---PEVCLKLVLMYIEEGLVEKTLDVVE 353 (603)
Q Consensus 283 ~~m~~~g~~p~------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~ 353 (603)
.+.... +.|. ...|..+.+.|-+.|+++.|+.+|++..+-..+.- ..+|.....+-.+..+++.|+++.+
T Consensus 371 teAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~ 449 (835)
T KOG2047|consen 371 TEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMR 449 (835)
T ss_pred HHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 887654 3332 34577888888999999999999999988654322 4577777788888888999998887
Q ss_pred HHHhCCCC-----------------CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChH
Q 007461 354 SMKNAKLK-----------------ISDCISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIALYS 416 (603)
Q Consensus 354 ~~~~~~~~-----------------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~ 416 (603)
......-. -+..+|...+..--..|-++....+|+++.+..+.......| ....+-...-++
T Consensus 450 ~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~N-yAmfLEeh~yfe 528 (835)
T KOG2047|consen 450 RATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIIN-YAMFLEEHKYFE 528 (835)
T ss_pred hhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHH-HHHHHHhhHHHH
Confidence 75432111 122345555555556777888888888888766533222222 222234555678
Q ss_pred HHHHHHHHHHHcCCCcC-HhhHHHHHHHHHc---cCCHHHHHHHHHHHHHcCCCCCHhHHHHH--HHHHHhcCCHHHHHH
Q 007461 417 KAEKVFIEMQQKGFDKC-VVAYSSMVAMYGK---TGRIRDAMWLVAKMKAKGCEPNVWIYNSL--MDMHGRAKNLRQVEK 490 (603)
Q Consensus 417 ~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~~~~p~~~~~~~l--i~~~~~~g~~~~a~~ 490 (603)
++.+++++-+..--.|+ ...|+..+.-+.+ .-.++.|..+|++.++ |++|...-+--| ...--+.|....|+.
T Consensus 529 esFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~ams 607 (835)
T KOG2047|consen 529 ESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMS 607 (835)
T ss_pred HHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 88888877555422333 3456666555544 3468899999999998 566643322222 222234688888999
Q ss_pred HHHHHHhCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH---HHHHHHHccCCHHHHHHHHHHH
Q 007461 491 LWKEMERRKVTPDK--VSYTTVISAYNRAREFDMCVKFYNEFRMNGGVIDRAIAG---IMVGVFSKLSQIEELVKLLQDM 565 (603)
Q Consensus 491 ~~~~m~~~~~~p~~--~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~---~l~~~~~~~g~~~~A~~~~~~m 565 (603)
++++... ++++.. ..||..|.--...=-+.....+|++.++. -||...-. -+.+.=.+.|.+++|..++..-
T Consensus 608 iyerat~-~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~--Lp~~~~r~mclrFAdlEtklGEidRARaIya~~ 684 (835)
T KOG2047|consen 608 IYERATS-AVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIES--LPDSKAREMCLRFADLETKLGEIDRARAIYAHG 684 (835)
T ss_pred HHHHHHh-cCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHh--CChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhh
Confidence 9999765 455544 35788776555444456667788888775 44554332 2334456788899998888766
Q ss_pred HhC-CCCCCHHHHHHHHHHHHhcCcHHHHHHHHh
Q 007461 566 KSE-GTKLDERLYHSAMNALRDAGLQMQAQWLQQ 598 (603)
Q Consensus 566 ~~~-g~~~~~~~~~~ll~a~~~~g~~~~a~~~~~ 598 (603)
-+- ....+...|.+.-.-=.++|+.+..+++++
T Consensus 685 sq~~dPr~~~~fW~twk~FEvrHGnedT~keMLR 718 (835)
T KOG2047|consen 685 SQICDPRVTTEFWDTWKEFEVRHGNEDTYKEMLR 718 (835)
T ss_pred hhcCCCcCChHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 543 233455667777666778888776666553
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.2e-10 Score=104.94 Aligned_cols=284 Identities=12% Similarity=0.069 Sum_probs=233.7
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHH
Q 007461 306 SITEVKLAEELFKEAEEKGMLRDPEVCLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRRGYWAAVK 385 (603)
Q Consensus 306 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 385 (603)
..|++.+|+++..+..+.+-.| ...|..-..+--..|+.+.+-.++.+..+....++....-+........|+++.|..
T Consensus 96 ~eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 96 FEGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred hcCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence 4699999999999988876432 334445566777889999999999999988555677778888889999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcC-------HhhHHHHHHHHHccCCHHHHHHHHH
Q 007461 386 VYEQLISQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQKGFDKC-------VVAYSSMVAMYGKTGRIRDAMWLVA 458 (603)
Q Consensus 386 ~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-------~~~~~~li~~~~~~g~~~~A~~~~~ 458 (603)
-+.++.+.+ +-+.........+|.+.|++.....++..+.+.+.-.+ ..+|..+++-....+..+.-...|+
T Consensus 175 ~v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~ 253 (400)
T COG3071 175 NVDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWK 253 (400)
T ss_pred HHHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 999999876 34567788899999999999999999999999886544 3467777777777777777677787
Q ss_pred HHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 007461 459 KMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNRAREFDMCVKFYNEFRMNGGVID 538 (603)
Q Consensus 459 ~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 538 (603)
....+ .+.++..-.+++.-+.+.|+.++|.++.++..+.+..|+ -...-.+.+-++.+.-++..++..+.... +
T Consensus 254 ~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~h~~-~ 327 (400)
T COG3071 254 NQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLKQHPE-D 327 (400)
T ss_pred hccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHHHHHHHHHHhCCC-C
Confidence 77655 456777778889999999999999999999998877766 22233566778888888888877765433 5
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHhh
Q 007461 539 RAIAGIMVGVFSKLSQIEELVKLLQDMKSEGTKLDERLYHSAMNALRDAGLQMQAQWLQQN 599 (603)
Q Consensus 539 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~a~~~~g~~~~a~~~~~~ 599 (603)
+..+..|...|.+.+.|.+|.+.|+...+ ..|+..+|..+..++.+.|+.++|.++.++
T Consensus 328 p~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~~~r~e 386 (400)
T COG3071 328 PLLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGEPEEAEQVRRE 386 (400)
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHHHHHHH
Confidence 68889999999999999999999998885 479999999999999999999999998875
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.51 E-value=8.9e-12 Score=121.15 Aligned_cols=282 Identities=14% Similarity=0.141 Sum_probs=137.5
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHcCCHH-HHHH
Q 007461 274 RAFEALKFFRDMKEKGILEDPSIYASLICSFASITEVKLAEELFKEAEEKG--MLRDPEVCLKLVLMYIEEGLVE-KTLD 350 (603)
Q Consensus 274 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~-~a~~ 350 (603)
+..+|+..|..+... +.-.......+..+|...+++++++++|+.+.+.. ..-+..+|.+.+..+-+.-.+. -|.+
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~ 412 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQD 412 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHH
Confidence 455666666664333 22223344555566666666666666666665543 1224455555444332211111 1111
Q ss_pred HHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 007461 351 VVESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLISQGCIP-GQVTYASIINAYCRIALYSKAEKVFIEMQQKG 429 (603)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 429 (603)
+. +.+. ....+|.++.+.|.-+++.+.|++.|++..... | ...+|+.+..-+.....+|.|...|+......
T Consensus 413 Li----~~~~-~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld--p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~ 485 (638)
T KOG1126|consen 413 LI----DTDP-NSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD--PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVD 485 (638)
T ss_pred HH----hhCC-CCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC--CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC
Confidence 11 1111 233456666666666666666666666555432 3 44555555555555555666666655554332
Q ss_pred CCcCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 007461 430 FDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDKVSYTT 509 (603)
Q Consensus 430 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 509 (603)
+.+-..|--+.-.|.|.++++.|+-.|++..+-+ +-+.+....+...+-+.|+.++|+.++++......+ |...---
T Consensus 486 -~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~ 562 (638)
T KOG1126|consen 486 -PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYH 562 (638)
T ss_pred -chhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHH
Confidence 1122233334445556666666666665555431 123344444445555556666666666665543222 2222222
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 007461 510 VISAYNRAREFDMCVKFYNEFRMNGGVID-RAIAGIMVGVFSKLSQIEELVKLLQDMKSE 568 (603)
Q Consensus 510 li~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 568 (603)
-+..+...+++++|+..++++++. .|+ ...+-.++..|.+.|+.+.|+.-|--+.+.
T Consensus 563 ~~~il~~~~~~~eal~~LEeLk~~--vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~l 620 (638)
T KOG1126|consen 563 RASILFSLGRYVEALQELEELKEL--VPQESSVFALLGKIYKRLGNTDLALLHFSWALDL 620 (638)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcC
Confidence 233344455566666666665553 233 234555555666666666666555555543
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.8e-11 Score=119.03 Aligned_cols=198 Identities=10% Similarity=0.033 Sum_probs=96.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH---HHHH
Q 007461 328 DPEVCLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQV---TYAS 404 (603)
Q Consensus 328 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~---~~~~ 404 (603)
.+.+|.++..+|.-+++.+.|++.|++..+.++. ...+|+.+..-+.....+|.|...|+.... .|.. .|-.
T Consensus 420 sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~-faYayTLlGhE~~~~ee~d~a~~~fr~Al~----~~~rhYnAwYG 494 (638)
T KOG1126|consen 420 SPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPR-FAYAYTLLGHESIATEEFDKAMKSFRKALG----VDPRHYNAWYG 494 (638)
T ss_pred CcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCc-cchhhhhcCChhhhhHHHHhHHHHHHhhhc----CCchhhHHHHh
Confidence 4455555555555555555555555555554432 334455555555555555555555555442 2222 2223
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCC
Q 007461 405 IINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKN 484 (603)
Q Consensus 405 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 484 (603)
+...|.+.++++.|+-.|+...+.+ +.+.+....+...+.+.|+.++|+.++++..... +-|+..--.....+...++
T Consensus 495 lG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld-~kn~l~~~~~~~il~~~~~ 572 (638)
T KOG1126|consen 495 LGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLD-PKNPLCKYHRASILFSLGR 572 (638)
T ss_pred hhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC-CCCchhHHHHHHHHHhhcc
Confidence 3444555555555555555555543 3344444445555555555555555555554431 1122222223344444555
Q ss_pred HHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 007461 485 LRQVEKLWKEMERRKVTPDK-VSYTTVISAYNRAREFDMCVKFYNEFRMNG 534 (603)
Q Consensus 485 ~~~a~~~~~~m~~~~~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 534 (603)
.++|+..++++++. .|+. ..|..+...|.+.|+.+.|+.-|.-+.+.+
T Consensus 573 ~~eal~~LEeLk~~--vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ld 621 (638)
T KOG1126|consen 573 YVEALQELEELKEL--VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLD 621 (638)
T ss_pred hHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCC
Confidence 55555555555532 3333 335555555555555555555555554443
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.4e-08 Score=98.90 Aligned_cols=454 Identities=12% Similarity=0.068 Sum_probs=290.0
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHH
Q 007461 128 VQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTIL 207 (603)
Q Consensus 128 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 207 (603)
...+++...+.+.+.+.+. .+-...|.....-.+...|+.++|....+.-...++.+.+.|..+.-.+....++++|++
T Consensus 18 yE~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiK 96 (700)
T KOG1156|consen 18 YETKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIK 96 (700)
T ss_pred HHHHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHH
Confidence 3456677777777776663 233444544444445567888888888888887777888888888888888888899999
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 007461 208 VYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKE 287 (603)
Q Consensus 208 ~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 287 (603)
+|......+.. |...+.-+.-.-++.|+++.....-....+..+.. ...|..++.++.-.|++..|..++++..+
T Consensus 97 cy~nAl~~~~d-N~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~----ra~w~~~Avs~~L~g~y~~A~~il~ef~~ 171 (700)
T KOG1156|consen 97 CYRNALKIEKD-NLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQ----RASWIGFAVAQHLLGEYKMALEILEEFEK 171 (700)
T ss_pred HHHHHHhcCCC-cHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888876533 56666666666667777777776666665544332 35688888888889999999999888876
Q ss_pred CC-CCCCHHHHHHHHH------HHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 007461 288 KG-ILEDPSIYASLIC------SFASITEVKLAEELFKEAEEKGMLRDPEVCLKLVLMYIEEGLVEKTLDVVESMKNAKL 360 (603)
Q Consensus 288 ~g-~~p~~~~~~~ll~------~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 360 (603)
.. -.|+...|..... .....|..+.|.+.+..-... +.-....-..-...+.+.+++++|..++..+..+++
T Consensus 172 t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnP 250 (700)
T KOG1156|consen 172 TQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNP 250 (700)
T ss_pred hhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCc
Confidence 53 2455555543322 234567777777766554332 111222333556778899999999999999998874
Q ss_pred CCCHhhHHHH-HHHHHhcCCHHHHH-HHHHHHHHcCCCCCHHHHHH-HHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhH
Q 007461 361 KISDCISCAI-VNGFSKRRGYWAAV-KVYEQLISQGCIPGQVTYAS-IINAYCRIALYSKAEKVFIEMQQKGFDKCVVAY 437 (603)
Q Consensus 361 ~~~~~~~~~l-i~~~~~~~~~~~a~-~~~~~m~~~g~~p~~~~~~~-ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 437 (603)
|...|+.. ..++.+-.+.-+++ .+|....+.- |-...... =++......-.+....++..+.+.|+++ ++
T Consensus 251 --dn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y--~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~---vf 323 (700)
T KOG1156|consen 251 --DNLDYYEGLEKALGKIKDMLEALKALYAILSEKY--PRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPS---VF 323 (700)
T ss_pred --hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcC--cccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCc---hh
Confidence 55555544 44443444444555 6666655431 11111111 1111222233445556677777888654 44
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHH----cC----------CCCCHhHH--HHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 007461 438 SSMVAMYGKTGRIRDAMWLVAKMKA----KG----------CEPNVWIY--NSLMDMHGRAKNLRQVEKLWKEMERRKVT 501 (603)
Q Consensus 438 ~~li~~~~~~g~~~~A~~~~~~m~~----~~----------~~p~~~~~--~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 501 (603)
..+...|-.....+-..++.-.+.. .| -+|....| -.++..|-+.|+++.|+..++..++ ..
T Consensus 324 ~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AId--HT 401 (700)
T KOG1156|consen 324 KDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAID--HT 401 (700)
T ss_pred hhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhc--cC
Confidence 4455444332222211111111111 11 14555444 4567788899999999999999994 46
Q ss_pred CCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHH-----
Q 007461 502 PDKV-SYTTVISAYNRAREFDMCVKFYNEFRMNGGVIDRAIAGIMVGVFSKLSQIEELVKLLQDMKSEGTKLDER----- 575 (603)
Q Consensus 502 p~~~-~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~----- 575 (603)
|+.+ .|..=.+.+.+.|++++|..++++..+.+. +|..+-.-...-..++.+.++|.++.....+.|. +..
T Consensus 402 PTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~-aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~--~~~~~L~~ 478 (700)
T KOG1156|consen 402 PTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDT-ADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF--GAVNNLAE 478 (700)
T ss_pred chHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccc-hhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc--chhhhHHH
Confidence 7654 455666888999999999999999988653 4666655777888899999999999999988874 222
Q ss_pred ---HHHHH--HHHHHhcCcHHHHHHHHhhc
Q 007461 576 ---LYHSA--MNALRDAGLQMQAQWLQQNF 600 (603)
Q Consensus 576 ---~~~~l--l~a~~~~g~~~~a~~~~~~~ 600 (603)
.|-.+ ..+|.+.|++.+|++=+..+
T Consensus 479 mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i 508 (700)
T KOG1156|consen 479 MQCMWFQLEDGEAYLRQNKLGLALKKFHEI 508 (700)
T ss_pred hhhHHHhHhhhHHHHHHHHHHHHHHHHhhH
Confidence 23322 24577778887776655443
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.49 E-value=7.4e-11 Score=117.97 Aligned_cols=434 Identities=13% Similarity=0.074 Sum_probs=265.3
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCC-cchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCC
Q 007461 138 SLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGE-IALLAFNSAMGGYNKLHMYYSTILVYEKMKSAG 216 (603)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 216 (603)
.++-.+...|+.|+..||..+|..|+..|+.+.|- +|..|..... .+...++.++.+....++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence 34556777899999999999999999999999888 9998887765 57888999999999998888776
Q ss_pred CCCChhhHHHHHHHHHHcCCHHH---HHHHHHHHHh----CCCCCCC-----------ccHHHHHHHHHHHhccCCHHHH
Q 007461 217 IVLDSGCYCQIMEAYYKIGDSEK---VAALFLECKS----RKLDSTP-----------FSTHMYKILCDSLGKSGRAFEA 278 (603)
Q Consensus 217 ~~p~~~~~~~ll~~~~~~g~~~~---a~~~~~~~~~----~~~~~~~-----------~~~~~~~~li~~~~~~g~~~~A 278 (603)
.|-+.||..|..+|...||+.. +++.+..+.. .+..... .....-...+....-.|-++.+
T Consensus 80 -ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaql 158 (1088)
T KOG4318|consen 80 -EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQL 158 (1088)
T ss_pred -CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHH
Confidence 5777899999999999999765 3332222221 1111100 0000112233334445555555
Q ss_pred HHHHHHHHHCC-CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 007461 279 LKFFRDMKEKG-ILEDPSIYASLICSFASITEVKLAEELFKEAEEKGMLRDPEVCLKLVLMYIEEGLVEKTLDVVESMKN 357 (603)
Q Consensus 279 ~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 357 (603)
++++..+.... ..|- ..+++-+.... .-.++++.......-.+++.++..+++.-...|+++.|..++.+|++
T Consensus 159 lkll~~~Pvsa~~~p~----~vfLrqnv~~n--tpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke 232 (1088)
T KOG4318|consen 159 LKLLAKVPVSAWNAPF----QVFLRQNVVDN--TPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKE 232 (1088)
T ss_pred HHHHhhCCcccccchH----HHHHHHhccCC--chHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHH
Confidence 55555443221 1111 11244443322 22333333333222258999999999999999999999999999999
Q ss_pred CCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHH-------------------
Q 007461 358 AKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIALYSKA------------------- 418 (603)
Q Consensus 358 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a------------------- 418 (603)
.|.+.+..-|..++-+ .++...+..+++-|.+.|+.|+..|+...+-.+..+|....+
T Consensus 233 ~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~ 309 (1088)
T KOG4318|consen 233 KGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAAC 309 (1088)
T ss_pred cCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHh
Confidence 9998888777777766 888889999999999999999999998777666654432211
Q ss_pred -----HHHHHHH---------HH---cCCCcCHhhHHHHHHHHHccCCHHHHHHHHHHHHHc--CCCC-CHhHHHHHHHH
Q 007461 419 -----EKVFIEM---------QQ---KGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAK--GCEP-NVWIYNSLMDM 478 (603)
Q Consensus 419 -----~~~~~~~---------~~---~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~p-~~~~~~~li~~ 478 (603)
.+.++.- .+ .|+......|...++. ...|+-++..++...+..- ...+ ++..|..++.-
T Consensus 310 rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~l-~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrq 388 (1088)
T KOG4318|consen 310 RGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEKL-RHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQ 388 (1088)
T ss_pred cccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHHH-HHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHH
Confidence 1111110 00 1222233344433332 2356666677666666431 1112 33445444443
Q ss_pred HHhcCCH----------------------HHHHHHHHHHHhCCCCCCH----------------------------HHHH
Q 007461 479 HGRAKNL----------------------RQVEKLWKEMERRKVTPDK----------------------------VSYT 508 (603)
Q Consensus 479 ~~~~g~~----------------------~~a~~~~~~m~~~~~~p~~----------------------------~~~~ 508 (603)
|.+.-+. .+..++... ..||. ..-+
T Consensus 389 yFrr~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~-----lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ 463 (1088)
T KOG4318|consen 389 YFRRIERHICSRIYYAGQGLSLNLNSEDTPRVSELLEN-----LRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIAN 463 (1088)
T ss_pred HHHHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHH-----hCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHH
Confidence 3322111 111111111 11221 1123
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHh
Q 007461 509 TVISAYNRAREFDMCVKFYNEFRMNGGVIDRAIAGIMVGVFSKLSQIEELVKLLQDMKSE--GTKLDERLYHSAMNALRD 586 (603)
Q Consensus 509 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~--g~~~~~~~~~~ll~a~~~ 586 (603)
.++..|+..-+..+++..-++.... .- ...|..||+-+....+.+.|..+.++.... .+..|...+..+.+.+.+
T Consensus 464 ql~l~l~se~n~lK~l~~~ekye~~-lf--~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r 540 (1088)
T KOG4318|consen 464 QLHLTLNSEYNKLKILCDEEKYEDL-LF--AGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQR 540 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-Hh--hhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHH
Confidence 3444444444444444333333221 11 145778888888888888888888877643 345667778888888888
Q ss_pred cCcHHHHHHHHhhcc
Q 007461 587 AGLQMQAQWLQQNFE 601 (603)
Q Consensus 587 ~g~~~~a~~~~~~~~ 601 (603)
.+....+..+++++.
T Consensus 541 ~~~l~dl~tiL~e~k 555 (1088)
T KOG4318|consen 541 LAILYDLSTILYEDK 555 (1088)
T ss_pred hHHHHHHHHHHhhhh
Confidence 888888888887764
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.1e-09 Score=102.85 Aligned_cols=285 Identities=9% Similarity=0.041 Sum_probs=178.0
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 007461 293 DPSIYASLICSFASITEVKLAEELFKEAEEKGMLRDPEVCLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVN 372 (603)
Q Consensus 293 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 372 (603)
+......-..-|-..+++.+..++.+.+.+.. +++...+..-|..+...|+..+-..+=.++.+..+. ...+|-++.-
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~-~a~sW~aVg~ 320 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPS-KALSWFAVGC 320 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCC-CCcchhhHHH
Confidence 33444444444555667777777777776654 344555555555666777766666555566555442 4446777777
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCCHHH
Q 007461 373 GFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRD 452 (603)
Q Consensus 373 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 452 (603)
-|.-.|+..+|.+.|.+...-.. .=...|......++-.|..|+|...+...-+.- +-...-+--+.--|.+.+..+-
T Consensus 321 YYl~i~k~seARry~SKat~lD~-~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgmey~~t~n~kL 398 (611)
T KOG1173|consen 321 YYLMIGKYSEARRYFSKATTLDP-TFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGMEYMRTNNLKL 398 (611)
T ss_pred HHHHhcCcHHHHHHHHHHhhcCc-cccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHHhccHHH
Confidence 77777777777777776553221 112356666677777777777777776665531 1111111222334666777777
Q ss_pred HHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCC----CCHHHHHHHHHHHHhcCCHHHHHHH
Q 007461 453 AMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEMERR--KVT----PDKVSYTTVISAYNRAREFDMCVKF 526 (603)
Q Consensus 453 A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~----p~~~~~~~li~~~~~~g~~~~a~~~ 526 (603)
|.++|.+.... .+.|+...+-+.-.....+.+.+|...|+..+.. .+. --..+++.|..+|.+.+.+++|+..
T Consensus 399 Ae~Ff~~A~ai-~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~ 477 (611)
T KOG1173|consen 399 AEKFFKQALAI-APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDY 477 (611)
T ss_pred HHHHHHHHHhc-CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHH
Confidence 77777776654 2446666666666666677777777777766421 011 1223577777788888888888888
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 007461 527 YNEFRMNGGVIDRAIAGIMVGVFSKLSQIEELVKLLQDMKSEGTKLDERLYHSAMNALR 585 (603)
Q Consensus 527 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~a~~ 585 (603)
+++.+....+ +..++.++.-.|...|+++.|++.|.+.+ .+.||..+...++..+.
T Consensus 478 ~q~aL~l~~k-~~~~~asig~iy~llgnld~Aid~fhKaL--~l~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 478 YQKALLLSPK-DASTHASIGYIYHLLGNLDKAIDHFHKAL--ALKPDNIFISELLKLAI 533 (611)
T ss_pred HHHHHHcCCC-chhHHHHHHHHHHHhcChHHHHHHHHHHH--hcCCccHHHHHHHHHHH
Confidence 8877766443 67777777777778888888888887776 56777777776666443
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.8e-09 Score=97.11 Aligned_cols=459 Identities=10% Similarity=0.064 Sum_probs=232.5
Q ss_pred HHHHhcCCCChHHHHHHHHHHhhCCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC
Q 007461 87 LHGMLKDPQTQELAYDYYNEAKKLPEFRPEKSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRAR 166 (603)
Q Consensus 87 l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 166 (603)
+.-+..++++.. |+.+++...... -.-...+--.+...+.+.|++++|+..+..+.... .++...+..|.-.+.-.|
T Consensus 29 Ledfls~rDytG-AislLefk~~~~-~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg 105 (557)
T KOG3785|consen 29 LEDFLSNRDYTG-AISLLEFKLNLD-REEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLG 105 (557)
T ss_pred HHHHHhcccchh-HHHHHHHhhccc-hhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHH
Confidence 555555555554 666665544321 11111222334445556666666666666655433 344444444444444445
Q ss_pred ChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHH
Q 007461 167 KFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLE 246 (603)
Q Consensus 167 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 246 (603)
.+.+|..+-.... .++..-..++..-.+.++-.+-....+.+.+. ..--.+|.......-.+.+|++++++
T Consensus 106 ~Y~eA~~~~~ka~----k~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkr 176 (557)
T KOG3785|consen 106 QYIEAKSIAEKAP----KTPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKR 176 (557)
T ss_pred HHHHHHHHHhhCC----CChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 6666655544322 22333333344444555555555444444331 11222333333334456666666666
Q ss_pred HHhCCCCCCCccHHHHHH-HHHHHhccCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHHHHcC
Q 007461 247 CKSRKLDSTPFSTHMYKI-LCDSLGKSGRAFEALKFFRDMKEKGILEDP-SIYASLICSFASITEVKLAEELFKEAEEKG 324 (603)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~-li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 324 (603)
+...+..-- ..|. +.-+|.+..-++-+.++++--++. -||. ...+.......+.=+-..|.+-.+.+.+.+
T Consensus 177 vL~dn~ey~-----alNVy~ALCyyKlDYydvsqevl~vYL~q--~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~ 249 (557)
T KOG3785|consen 177 VLQDNPEYI-----ALNVYMALCYYKLDYYDVSQEVLKVYLRQ--FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNI 249 (557)
T ss_pred HHhcChhhh-----hhHHHHHHHHHhcchhhhHHHHHHHHHHh--CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcc
Confidence 655443321 1221 334455566666666666555543 3332 222222222222222223333333333322
Q ss_pred CCCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 007461 325 MLRDPEVCLKLVLMYIEE-----GLVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQ 399 (603)
Q Consensus 325 ~~~~~~~~~~l~~~~~~~-----g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~ 399 (603)
-.. -..+.-.++. ..-+.|++++-.+.+.-+ . .--.++--|.+.+++.+|..+.+++.- .++
T Consensus 250 ~~~-----~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IP--E--ARlNL~iYyL~q~dVqeA~~L~Kdl~P----ttP 316 (557)
T KOG3785|consen 250 DQE-----YPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIP--E--ARLNLIIYYLNQNDVQEAISLCKDLDP----TTP 316 (557)
T ss_pred ccc-----chhHHHHHHcCeEEEeCCccHHHhchHHHhhCh--H--hhhhheeeecccccHHHHHHHHhhcCC----CCh
Confidence 111 1122222222 223455555544443221 1 233455667788888888887776541 222
Q ss_pred HHHHHHHHHHHhcC-------ChHHHHHHHHHHHHcCCCcC-HhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhH
Q 007461 400 VTYASIINAYCRIA-------LYSKAEKVFIEMQQKGFDKC-VVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWI 471 (603)
Q Consensus 400 ~~~~~ll~~~~~~g-------~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 471 (603)
.-|..-.-.....| ...-|.+.|...-+.+..-| +.--.++...+.-..++++.+-.++.+..-=...|...
T Consensus 317 ~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn 396 (557)
T KOG3785|consen 317 YEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFN 396 (557)
T ss_pred HHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhh
Confidence 22221111122222 23445555655544443322 23344556666666778888888888776534445555
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHH
Q 007461 472 YNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDKVSY-TTVISAYNRAREFDMCVKFYNEFRMNGGVIDRA-IAGIMVGVF 549 (603)
Q Consensus 472 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~-~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~ 549 (603)
+| +..+++..|++.+|+++|-.+....++ |..+| ..|.++|.+.+.++.|++++-++ +...+.. ....+...|
T Consensus 397 ~N-~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~---~t~~e~fsLLqlIAn~C 471 (557)
T KOG3785|consen 397 LN-LAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKT---NTPSERFSLLQLIANDC 471 (557)
T ss_pred hH-HHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhc---CCchhHHHHHHHHHHHH
Confidence 54 677888888888888888887654444 44555 44556777888888887775443 2222333 334555677
Q ss_pred HccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 007461 550 SKLSQIEELVKLLQDMKSEGTKLDERLYHSAMNAL 584 (603)
Q Consensus 550 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~a~ 584 (603)
.+++.+=-|.+.|+.+... .|+...|..--.||
T Consensus 472 Yk~~eFyyaaKAFd~lE~l--DP~pEnWeGKRGAC 504 (557)
T KOG3785|consen 472 YKANEFYYAAKAFDELEIL--DPTPENWEGKRGAC 504 (557)
T ss_pred HHHHHHHHHHHhhhHHHcc--CCCccccCCccchH
Confidence 7888887788888777643 57777776555454
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.43 E-value=3e-08 Score=96.58 Aligned_cols=423 Identities=13% Similarity=0.097 Sum_probs=260.4
Q ss_pred cCCCChHHHHHHHHHHhhCCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHH
Q 007461 92 KDPQTQELAYDYYNEAKKLPEFRPEKSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIA 171 (603)
Q Consensus 92 ~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 171 (603)
.-|+..+ |.+..+...+. -.-+...|..+.-.+....++++|+..|......+ +.|...+.-+--.-++.|+++..
T Consensus 53 ~lg~~~e-a~~~vr~glr~--d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~ 128 (700)
T KOG1156|consen 53 CLGKKEE-AYELVRLGLRN--DLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGY 128 (700)
T ss_pred cccchHH-HHHHHHHHhcc--CcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhH
Confidence 3455555 77777766653 24466678777777777788888888888887765 55666777666666777888877
Q ss_pred HHHHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCC-CCCChhhHHHHH------HHHHHcCCHHHHHHHH
Q 007461 172 NTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAG-IVLDSGCYCQIM------EAYYKIGDSEKVAALF 244 (603)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~~~~~ll------~~~~~~g~~~~a~~~~ 244 (603)
...-..+.+..+.....|.....++.-.|++..|..+++...+.. -.|+...+.... ....+.|.++.|.+.+
T Consensus 129 ~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L 208 (700)
T KOG1156|consen 129 LETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHL 208 (700)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence 777777777777778888888888888888888888888887754 245665554433 2344567777777766
Q ss_pred HHHHhCCCCCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-c-cCCHHHHHHHHHHHHH
Q 007461 245 LECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEKGILEDPSIYASLICSFA-S-ITEVKLAEELFKEAEE 322 (603)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~-~-~g~~~~a~~~~~~~~~ 322 (603)
......-... ...-..-...+.+.+++++|..+|..++.. .||..-|...+..+. . .+..+....++....+
T Consensus 209 ~~~e~~i~Dk----la~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~ 282 (700)
T KOG1156|consen 209 LDNEKQIVDK----LAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSE 282 (700)
T ss_pred HhhhhHHHHH----HHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhh
Confidence 5543322111 112234456778888999999999988876 566666655544443 2 3333333355655544
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH----HcCC---
Q 007461 323 KGMLRDPEVCLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLI----SQGC--- 395 (603)
Q Consensus 323 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~----~~g~--- 395 (603)
.-......... =+.......-.+...+++..+.+.|+++ ++..+...|-.....+-..++.-.+. ..|.
T Consensus 283 ~y~r~e~p~Rl-plsvl~~eel~~~vdkyL~~~l~Kg~p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~ 358 (700)
T KOG1156|consen 283 KYPRHECPRRL-PLSVLNGEELKEIVDKYLRPLLSKGVPS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNF 358 (700)
T ss_pred cCcccccchhc-cHHHhCcchhHHHHHHHHHHHhhcCCCc---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCc
Confidence 31110000000 0011111112233344555666777643 35555544433222221111111111 1110
Q ss_pred -------CCCHH--HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCC
Q 007461 396 -------IPGQV--TYASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCE 466 (603)
Q Consensus 396 -------~p~~~--~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 466 (603)
+|... ++-.++..+-+.|+++.|...++.....- +.-+..|..=.+.+...|++++|..++++..+.. .
T Consensus 359 ~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHT-PTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~ 436 (700)
T KOG1156|consen 359 LDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHT-PTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-T 436 (700)
T ss_pred ccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccC-chHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-c
Confidence 34443 34456777888999999999999887762 2234566666788888999999999999988763 4
Q ss_pred CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH--------HHHH--HHHHHhcCCHHHHHHHHHHHHH
Q 007461 467 PNVWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDKVS--------YTTV--ISAYNRAREFDMCVKFYNEFRM 532 (603)
Q Consensus 467 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~--------~~~l--i~~~~~~g~~~~a~~~~~~~~~ 532 (603)
||..+-.-...-..+.++.++|.++.....+.|. +... |-.+ ..+|.+.|++..|++-|..+-+
T Consensus 437 aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~--~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~k 510 (700)
T KOG1156|consen 437 ADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF--GAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIEK 510 (700)
T ss_pred hhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc--chhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHHH
Confidence 5665555666677788899999998888877664 2221 2111 2456777777777776665543
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.5e-07 Score=90.16 Aligned_cols=501 Identities=10% Similarity=0.071 Sum_probs=320.2
Q ss_pred hhHHHHHHhcCCCChHHHHHHHHHHhhCCCCCCCHHhHHHHHHHHHh---cC-CHHHHHHHHHHHHhCCCC---CCHHHH
Q 007461 83 FDSFLHGMLKDPQTQELAYDYYNEAKKLPEFRPEKSTLKLLIRYLVQ---SK-KWDSIVSLSEDFKIYNVL---PDAHTC 155 (603)
Q Consensus 83 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~~-~~~~a~~~~~~~~~~~~~---~~~~~~ 155 (603)
|-..|..-.. ...+.-..+|+++.+. ++-+-..|..-+..-.. .. -.+.+...++..-+..+. .-+..|
T Consensus 30 W~RYIe~k~~--sp~k~~~~lYERal~~--lp~sykiW~~YL~~R~~~vk~~~~T~~~~~~vn~c~er~lv~mHkmpRIw 105 (835)
T KOG2047|consen 30 WLRYIEHKAG--SPDKQRNLLYERALKE--LPGSYKIWYDYLKARRAQVKHLCPTDPAYESVNNCFERCLVFMHKMPRIW 105 (835)
T ss_pred HHHHHHHHcc--CChHHHHHHHHHHHHH--CCCchHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHhcCCHHH
Confidence 5455554433 4444577888888764 46677777776643221 11 112333333333222221 345677
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHhcCCc--chhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHH
Q 007461 156 SRLVASCVRARKFKIANTLLQVFITDGEI--ALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYK 233 (603)
Q Consensus 156 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 233 (603)
..-+..+.+.|++...+..|+..+..-|. ...+|...+......+-++-++.++++-++. ++..-.--+..+++
T Consensus 106 l~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie~L~~ 181 (835)
T KOG2047|consen 106 LDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIEYLAK 181 (835)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHHHHHh
Confidence 77778888899999999999998876663 5678999999999999999999999999875 33357778888999
Q ss_pred cCCHHHHHHHHHHHHhCCCC---CCCccHHHHHHHHHHHhccCCHHHHH---HHHHHHHHCCCCCCH--HHHHHHHHHHH
Q 007461 234 IGDSEKVAALFLECKSRKLD---STPFSTHMYKILCDSLGKSGRAFEAL---KFFRDMKEKGILEDP--SIYASLICSFA 305 (603)
Q Consensus 234 ~g~~~~a~~~~~~~~~~~~~---~~~~~~~~~~~li~~~~~~g~~~~A~---~~~~~m~~~g~~p~~--~~~~~ll~~~~ 305 (603)
.+++++|.+.+..+...+.. ..+.+-..|..+.+...++-+.-..+ .+++.+... -+|. ..|.+|..-|.
T Consensus 182 ~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLAdYYI 259 (835)
T KOG2047|consen 182 SDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLADYYI 259 (835)
T ss_pred ccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHHHHHH
Confidence 99999999999887643211 11223456888877777765543333 334444332 4554 46889999999
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC----------------------CHHHHHHHHHHHHhCCCC--
Q 007461 306 SITEVKLAEELFKEAEEKGMLRDPEVCLKLVLMYIEEG----------------------LVEKTLDVVESMKNAKLK-- 361 (603)
Q Consensus 306 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----------------------~~~~a~~~~~~~~~~~~~-- 361 (603)
+.|.++.|..++++....- ....-++.+.+.|+.-. +++-...-|+.+.+..+.
T Consensus 260 r~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~l 337 (835)
T KOG2047|consen 260 RSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLL 337 (835)
T ss_pred HhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHH
Confidence 9999999999999988753 23333444444443211 122233334444333221
Q ss_pred ---------CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC------HHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 007461 362 ---------ISDCISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPG------QVTYASIINAYCRIALYSKAEKVFIEMQ 426 (603)
Q Consensus 362 ---------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~------~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 426 (603)
-+...|..-+. +..|+..+-+..|.+..+. +.|- ...|..+...|-..|+++.|..+|++..
T Consensus 338 NsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~ 414 (835)
T KOG2047|consen 338 NSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKAT 414 (835)
T ss_pred HHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhh
Confidence 11222222221 2345666777777777653 1221 2356778888999999999999999988
Q ss_pred HcCCCcC---HhhHHHHHHHHHccCCHHHHHHHHHHHHHc----------CCCC-------CHhHHHHHHHHHHhcCCHH
Q 007461 427 QKGFDKC---VVAYSSMVAMYGKTGRIRDAMWLVAKMKAK----------GCEP-------NVWIYNSLMDMHGRAKNLR 486 (603)
Q Consensus 427 ~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----------~~~p-------~~~~~~~li~~~~~~g~~~ 486 (603)
+..++.- ..+|..-..+=.+..+++.|+++.+..... |..| +...|...++.--..|-++
T Consensus 415 ~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfe 494 (835)
T KOG2047|consen 415 KVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFE 494 (835)
T ss_pred cCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHH
Confidence 7653322 445666666667788899999988876532 1111 3456777777777889999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHc---cCCHHHHHHHH
Q 007461 487 QVEKLWKEMERRKVTPDKVSYTTVISAYNRAREFDMCVKFYNEFRMNGGVIDR-AIAGIMVGVFSK---LSQIEELVKLL 562 (603)
Q Consensus 487 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~---~g~~~~A~~~~ 562 (603)
....+++++++..+.......| ....+-.+.-++++.+++++-+..-.-|+. .+|+..+.-+.+ .-+.+.|..+|
T Consensus 495 stk~vYdriidLriaTPqii~N-yAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLF 573 (835)
T KOG2047|consen 495 STKAVYDRIIDLRIATPQIIIN-YAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLF 573 (835)
T ss_pred HHHHHHHHHHHHhcCCHHHHHH-HHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 9999999998876542222211 122233455688888888876655334554 467776665543 23689999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHH--HHhcCcHHHHHHHHhhc
Q 007461 563 QDMKSEGTKLDERLYHSAMNA--LRDAGLQMQAQWLQQNF 600 (603)
Q Consensus 563 ~~m~~~g~~~~~~~~~~ll~a--~~~~g~~~~a~~~~~~~ 600 (603)
++.++ |++|...-+--|+-| =-+.|.-..|+.++++.
T Consensus 574 EqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyera 612 (835)
T KOG2047|consen 574 EQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERA 612 (835)
T ss_pred HHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 99998 777765433333322 24679999999998864
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=6.3e-10 Score=115.17 Aligned_cols=251 Identities=10% Similarity=-0.019 Sum_probs=154.3
Q ss_pred ChHHHHHHHHHHHhcCCcchhhHHHHHhhhh---------hcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCH
Q 007461 167 KFKIANTLLQVFITDGEIALLAFNSAMGGYN---------KLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDS 237 (603)
Q Consensus 167 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~---------~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~ 237 (603)
++++|...|++..+.+|.+..+|..+..++. ..+++++|...+++..+.+.. +...+..+...+...|++
T Consensus 276 ~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~-~~~a~~~lg~~~~~~g~~ 354 (553)
T PRK12370 276 SLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHN-NPQALGLLGLINTIHSEY 354 (553)
T ss_pred HHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHccCH
Confidence 4567777777777777766666666655443 223467777777777776433 566677777777777888
Q ss_pred HHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 007461 238 EKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEKGILEDPSIYASLICSFASITEVKLAEELF 317 (603)
Q Consensus 238 ~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 317 (603)
++|...|++..+.++.. ...|..+...+...|++++|+..+++..+.... +...+..++..+...|++++|...+
T Consensus 355 ~~A~~~~~~Al~l~P~~----~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~ 429 (553)
T PRK12370 355 IVGSLLFKQANLLSPIS----ADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLG 429 (553)
T ss_pred HHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHH
Confidence 88888887777665432 346777777777888888888888877765322 2222333344455567778888877
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CC
Q 007461 318 KEAEEKGMLRDPEVCLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLISQG-CI 396 (603)
Q Consensus 318 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~ 396 (603)
+++.+...+.++..+..+...|...|+.++|...+.++....+. +....+.+...|...| ++|...++.+.+.. ..
T Consensus 430 ~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~ 506 (553)
T PRK12370 430 DELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEIT-GLIAVNLLYAEYCQNS--ERALPTIREFLESEQRI 506 (553)
T ss_pred HHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccch-hHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHh
Confidence 77766543334555666777777788888888887776554332 3333455555556666 46666666655421 11
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 007461 397 PGQVTYASIINAYCRIALYSKAEKVFIEMQQKG 429 (603)
Q Consensus 397 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 429 (603)
+..... .-..+.-.|+.+.+..+ +++.+.+
T Consensus 507 ~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 507 DNNPGL--LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred hcCchH--HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 222222 22334445666666555 6666543
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.39 E-value=6e-08 Score=97.06 Aligned_cols=293 Identities=12% Similarity=0.079 Sum_probs=193.5
Q ss_pred HHhcCCCChHHHHHHHHHHhhCCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcc---
Q 007461 89 GMLKDPQTQELAYDYYNEAKKLPEFRPEKSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRA--- 165 (603)
Q Consensus 89 ~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~--- 165 (603)
.+...|+..+ |++.++.-... +......+......+.+.|+.++|..++..+++.+ +.+..-|..+..+..-.
T Consensus 13 il~e~g~~~~-AL~~L~~~~~~--I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~g~~~~~ 88 (517)
T PF12569_consen 13 ILEEAGDYEE-ALEHLEKNEKQ--ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEALGLQLQL 88 (517)
T ss_pred HHHHCCCHHH-HHHHHHhhhhh--CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHhhhccc
Confidence 3445566655 99998775542 33345567778899999999999999999999887 33444445555554222
Q ss_pred --CChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcH-HHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCHHHHHH
Q 007461 166 --RKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMY-YSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAA 242 (603)
Q Consensus 166 --~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~ 242 (603)
.+.+....+++.+....|.....-..-+.... ...+ ..+...+..+...|+++ +|+.|-..|......+-..+
T Consensus 89 ~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~-g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~ 164 (517)
T PF12569_consen 89 SDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLE-GDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIES 164 (517)
T ss_pred ccccHHHHHHHHHHHHHhCccccchhHhhcccCC-HHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHH
Confidence 35677788888887766532222222222222 2233 34556677788888764 77777777776655666666
Q ss_pred HHHHHHhC----CC-------CCCCccH--HHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccC
Q 007461 243 LFLECKSR----KL-------DSTPFST--HMYKILCDSLGKSGRAFEALKFFRDMKEKGILED-PSIYASLICSFASIT 308 (603)
Q Consensus 243 ~~~~~~~~----~~-------~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g 308 (603)
++...... +. ...+++. .++..+...|-..|++++|++.+++.++. .|+ +..|..-.+.+-+.|
T Consensus 165 l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~G 242 (517)
T PF12569_consen 165 LVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHAG 242 (517)
T ss_pred HHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHCC
Confidence 66655432 11 1122333 45566778888899999999999988876 554 567777788888899
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhh------H--HHHHHHHHhcCCH
Q 007461 309 EVKLAEELFKEAEEKGMLRDPEVCLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCI------S--CAIVNGFSKRRGY 380 (603)
Q Consensus 309 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~------~--~~li~~~~~~~~~ 380 (603)
++.+|.+.++....... -|..+-+..+..+.++|++++|.+++......+..|-... | .....+|.+.|++
T Consensus 243 ~~~~Aa~~~~~Ar~LD~-~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~ 321 (517)
T PF12569_consen 243 DLKEAAEAMDEARELDL-ADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDY 321 (517)
T ss_pred CHHHHHHHHHHHHhCCh-hhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhH
Confidence 99999999988888764 3777777888888899999999888888776654322211 1 2334566677777
Q ss_pred HHHHHHHHHHHH
Q 007461 381 WAAVKVYEQLIS 392 (603)
Q Consensus 381 ~~a~~~~~~m~~ 392 (603)
..|++.|....+
T Consensus 322 ~~ALk~~~~v~k 333 (517)
T PF12569_consen 322 GLALKRFHAVLK 333 (517)
T ss_pred HHHHHHHHHHHH
Confidence 776666655543
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.1e-08 Score=92.17 Aligned_cols=463 Identities=12% Similarity=0.039 Sum_probs=270.9
Q ss_pred hhHHHHHHh-cCCCChHHHHHHHHHHhhCCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 007461 83 FDSFLHGML-KDPQTQELAYDYYNEAKKLPEFRPEKSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVAS 161 (603)
Q Consensus 83 ~~~~l~~~~-~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 161 (603)
.+..|..+. ..|++.+ |+..|..+.+.. .|+...+-.|.-...-.|.+.+|.++-++. +.++-.-..|...
T Consensus 59 ~~lWia~C~fhLgdY~~-Al~~Y~~~~~~~--~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka-----~k~pL~~RLlfhl 130 (557)
T KOG3785|consen 59 LQLWIAHCYFHLGDYEE-ALNVYTFLMNKD--DAPAELGVNLACCKFYLGQYIEAKSIAEKA-----PKTPLCIRLLFHL 130 (557)
T ss_pred HHHHHHHHHHhhccHHH-HHHHHHHHhccC--CCCcccchhHHHHHHHHHHHHHHHHHHhhC-----CCChHHHHHHHHH
Confidence 444455544 4566655 888888887753 567777777777777788898988877654 2334444445555
Q ss_pred HHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHH-HHHHHHHcCCHHHH
Q 007461 162 CVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQ-IMEAYYKIGDSEKV 240 (603)
Q Consensus 162 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~-ll~~~~~~g~~~~a 240 (603)
-.+.++-++-....+.+... .+--.+|....-..-.+++|++++.++...+ |+-...+. +.-.|.+..-++-+
T Consensus 131 ahklndEk~~~~fh~~LqD~----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn--~ey~alNVy~ALCyyKlDYydvs 204 (557)
T KOG3785|consen 131 AHKLNDEKRILTFHSSLQDT----LEDQLSLASVHYMRMHYQEAIDVYKRVLQDN--PEYIALNVYMALCYYKLDYYDVS 204 (557)
T ss_pred HHHhCcHHHHHHHHHHHhhh----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC--hhhhhhHHHHHHHHHhcchhhhH
Confidence 56667766665555544331 1223344444444457889999999888753 34444443 34456777778888
Q ss_pred HHHHHHHHhCCCCCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH-HHHccCCHHHHHHHHHH
Q 007461 241 AALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEKGILEDPSIYASLIC-SFASITEVKLAEELFKE 319 (603)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~-~~~~~g~~~~a~~~~~~ 319 (603)
.++++-....-+.+ ..+-|..+....+.=.-..|.+-.+++.+.+-..-. ...-+++ -+.--.+-+.|.+++-.
T Consensus 205 qevl~vYL~q~pdS----tiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~-f~~~l~rHNLVvFrngEgALqVLP~ 279 (557)
T KOG3785|consen 205 QEVLKVYLRQFPDS----TIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYP-FIEYLCRHNLVVFRNGEGALQVLPS 279 (557)
T ss_pred HHHHHHHHHhCCCc----HHHHHHHHHHHhhhhccchhHHHHHHHHhcccccch-hHHHHHHcCeEEEeCCccHHHhchH
Confidence 88887776655443 345565555554433333444444455443221100 0111111 11122345677777766
Q ss_pred HHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHH--HhcCC-------HHHHHHHHHHH
Q 007461 320 AEEKGMLRDPEVCLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGF--SKRRG-------YWAAVKVYEQL 390 (603)
Q Consensus 320 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~--~~~~~-------~~~a~~~~~~m 390 (603)
+.+. -+..-..|+-.|.+.+++.+|..+.+++... .| +..++++. +..|+ ..-|.+.|+..
T Consensus 280 L~~~----IPEARlNL~iYyL~q~dVqeA~~L~Kdl~Pt--tP----~EyilKgvv~aalGQe~gSreHlKiAqqffqlV 349 (557)
T KOG3785|consen 280 LMKH----IPEARLNLIIYYLNQNDVQEAISLCKDLDPT--TP----YEYILKGVVFAALGQETGSREHLKIAQQFFQLV 349 (557)
T ss_pred HHhh----ChHhhhhheeeecccccHHHHHHHHhhcCCC--Ch----HHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHh
Confidence 6553 2233445667788999999998877655422 12 33344332 22232 34455555555
Q ss_pred HHcCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCH
Q 007461 391 ISQGCIPGQV-TYASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNV 469 (603)
Q Consensus 391 ~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 469 (603)
-..+..-|.. --..+...+.-..++++.+-.++.+...-...| ..--.+.++++..|.+.+|+++|-.+....++.+.
T Consensus 350 G~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD-~Fn~N~AQAk~atgny~eaEelf~~is~~~ikn~~ 428 (557)
T KOG3785|consen 350 GESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDD-DFNLNLAQAKLATGNYVEAEELFIRISGPEIKNKI 428 (557)
T ss_pred cccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc-hhhhHHHHHHHHhcChHHHHHHHhhhcChhhhhhH
Confidence 4444433332 223455555666778888888888877643333 33445778888899999999999877654444333
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007461 470 WIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDKVSY-TTVISAYNRAREFDMCVKFYNEFRMNGGVIDRAIAGIMVGV 548 (603)
Q Consensus 470 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~-~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 548 (603)
.-...|.++|.+++.++.|..++-.+ .-+.+..++ ..+..-|.+++.+=-|-+.|+.+... .|++..|.
T Consensus 429 ~Y~s~LArCyi~nkkP~lAW~~~lk~---~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~l--DP~pEnWe----- 498 (557)
T KOG3785|consen 429 LYKSMLARCYIRNKKPQLAWDMMLKT---NTPSERFSLLQLIANDCYKANEFYYAAKAFDELEIL--DPTPENWE----- 498 (557)
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHhc---CCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHcc--CCCccccC-----
Confidence 33455667888889888887666554 333344443 34446688888888888888887764 45666553
Q ss_pred HHccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCc
Q 007461 549 FSKLSQIEELVKLLQDMKSEGTKL-DERLYHSAMNALRDAGL 589 (603)
Q Consensus 549 ~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~ll~a~~~~g~ 589 (603)
|+-.....+|..+....-.| -......++..++..++
T Consensus 499 ----GKRGACaG~f~~l~~~~~~~~p~~~~rEVvhllr~~~n 536 (557)
T KOG3785|consen 499 ----GKRGACAGLFRQLANHKTDPIPISQMREVVHLLRMKPN 536 (557)
T ss_pred ----CccchHHHHHHHHHcCCCCCCchhHHHHHHHHHHhCCC
Confidence 44444556666665432222 24456666666665544
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=8.6e-10 Score=114.18 Aligned_cols=267 Identities=9% Similarity=-0.011 Sum_probs=192.1
Q ss_pred CCHHhHHHHHHHHHh-----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH---------ccCChHHHHHHHHHHHh
Q 007461 115 PEKSTLKLLIRYLVQ-----SKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCV---------RARKFKIANTLLQVFIT 180 (603)
Q Consensus 115 p~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~---------~~~~~~~a~~~~~~~~~ 180 (603)
.+...|...+++... .+.+++|+.+|++..+.. +.+...|..+..++. ..+++++|...+++..+
T Consensus 254 ~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ 332 (553)
T PRK12370 254 NSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATE 332 (553)
T ss_pred CChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHh
Confidence 345555555554321 245789999999998875 445566666655443 23458899999999999
Q ss_pred cCCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccHH
Q 007461 181 DGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTH 260 (603)
Q Consensus 181 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 260 (603)
.+|.+..++..+...+...|++++|...|++..+.+.. +...+..+...+...|++++|...+++..+.++... .
T Consensus 333 ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~----~ 407 (553)
T PRK12370 333 LDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPI-SADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRA----A 407 (553)
T ss_pred cCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCh----h
Confidence 99999999999999999999999999999999987533 566788899999999999999999999988876532 2
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 007461 261 MYKILCDSLGKSGRAFEALKFFRDMKEKGILE-DPSIYASLICSFASITEVKLAEELFKEAEEKGMLRDPEVCLKLVLMY 339 (603)
Q Consensus 261 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 339 (603)
.+..++..+...|++++|+..+++..... .| +...+..+..++...|+.++|.+.+..+.... +.+....+.+...|
T Consensus 408 ~~~~~~~~~~~~g~~eeA~~~~~~~l~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~-~~~~~~~~~l~~~~ 485 (553)
T PRK12370 408 AGITKLWITYYHTGIDDAIRLGDELRSQH-LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE-ITGLIAVNLLYAEY 485 (553)
T ss_pred hHHHHHHHHHhccCHHHHHHHHHHHHHhc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-chhHHHHHHHHHHH
Confidence 34445556777899999999999987653 34 44456777778889999999999998876542 22444556666677
Q ss_pred HHcCCHHHHHHHHHHHHhCCC-CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 007461 340 IEEGLVEKTLDVVESMKNAKL-KISDCISCAIVNGFSKRRGYWAAVKVYEQLISQG 394 (603)
Q Consensus 340 ~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g 394 (603)
+..| ++|...++.+.+..- .+....+ +-..+.-.|+.+.+..+ +++.+.|
T Consensus 486 ~~~g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 486 CQNS--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred hccH--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 8777 477777776654311 1111122 44445556676666666 8887664
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.36 E-value=6e-10 Score=102.59 Aligned_cols=199 Identities=9% Similarity=-0.044 Sum_probs=122.4
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhh
Q 007461 117 KSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGY 196 (603)
Q Consensus 117 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 196 (603)
...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|.+.+++.....+.+...+..+...+
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 109 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Confidence 4556666777777777777777777776554 344566666677777777777777777777766666666666777777
Q ss_pred hhcCcHHHHHHHHHHHHhCCCC-CChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccCCH
Q 007461 197 NKLHMYYSTILVYEKMKSAGIV-LDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRA 275 (603)
Q Consensus 197 ~~~~~~~~a~~~~~~m~~~~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 275 (603)
...|++++|.+.+++..+.... .....+..+...+...|++++|...+++.....+. +...+..+...+...|++
T Consensus 110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~~~la~~~~~~~~~ 185 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ----RPESLLELAELYYLRGQY 185 (234)
T ss_pred HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC----ChHHHHHHHHHHHHcCCH
Confidence 7777777777777776653211 12334555566666666666666666666554332 123555666666666666
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 007461 276 FEALKFFRDMKEKGILEDPSIYASLICSFASITEVKLAEELFKEAE 321 (603)
Q Consensus 276 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 321 (603)
++|.+.+++.... ...+...+..+...+...|+.+.|..+.+.+.
T Consensus 186 ~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 186 KDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred HHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 6666666666554 12233444444455555555555555554443
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.2e-09 Score=100.60 Aligned_cols=198 Identities=12% Similarity=0.023 Sum_probs=104.0
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 007461 152 AHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAY 231 (603)
Q Consensus 152 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 231 (603)
...+..+...+...|++++|...+++.....+.+..++..+...+...|++++|.+.+++..+.+.. +...+..+...+
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~ 109 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN-NGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHH
Confidence 4455556666666666777766666666655555666666666666666666666666666554322 344555555666
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHH
Q 007461 232 YKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEKGILEDPSIYASLICSFASITEVK 311 (603)
Q Consensus 232 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~ 311 (603)
...|++++|.+.|++.......+. ....+..+...+...|++++|.+.+++..... +.+...+..+...+...|+++
T Consensus 110 ~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~ 186 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIEDPLYPQ--PARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYK 186 (234)
T ss_pred HHcccHHHHHHHHHHHHhcccccc--chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHH
Confidence 666666666666666554321111 12334445555555556666655555555432 112334444444445555555
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 007461 312 LAEELFKEAEEKGMLRDPEVCLKLVLMYIEEGLVEKTLDVVES 354 (603)
Q Consensus 312 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 354 (603)
+|...+++..+. .+.+...+..+...+...|+.++|..+.+.
T Consensus 187 ~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 228 (234)
T TIGR02521 187 DARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQ 228 (234)
T ss_pred HHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 555555554443 122333333444444444444444444443
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.34 E-value=3.6e-08 Score=94.60 Aligned_cols=469 Identities=12% Similarity=0.040 Sum_probs=310.5
Q ss_pred CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHh
Q 007461 115 PEKSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMG 194 (603)
Q Consensus 115 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 194 (603)
.+..-+..+++-+....++..|+-+-++....+ .|+...-.+..++.-.|++++|..++..- .....+..+......
T Consensus 14 ~s~~~~~~~~r~~l~q~~y~~a~f~adkV~~l~--~dp~d~~~~aq~l~~~~~y~ra~~lit~~-~le~~d~~cryL~~~ 90 (611)
T KOG1173|consen 14 LSLEKYRRLVRDALMQHRYKTALFWADKVAGLT--NDPADIYWLAQVLYLGRQYERAAHLITTY-KLEKRDIACRYLAAK 90 (611)
T ss_pred ccHHHHHHHHHHHHHHHhhhHHHHHHHHHHhcc--CChHHHHHHHHHHHhhhHHHHHHHHHHHh-hhhhhhHHHHHHHHH
Confidence 456678888888888899999999999887665 44444444677777788898888777665 223467888888888
Q ss_pred hhhhcCcHHHHHHHHHHHHh--CCC-----------CCChhh-----------HHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 007461 195 GYNKLHMYYSTILVYEKMKS--AGI-----------VLDSGC-----------YCQIMEAYYKIGDSEKVAALFLECKSR 250 (603)
Q Consensus 195 ~~~~~~~~~~a~~~~~~m~~--~~~-----------~p~~~~-----------~~~ll~~~~~~g~~~~a~~~~~~~~~~ 250 (603)
.+.+..++++|..++..-.. ..+ .+|..- +-.-...|....+.++|+..|.+....
T Consensus 91 ~l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~ 170 (611)
T KOG1173|consen 91 CLVKLKEWDQALLVLGRGHVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLA 170 (611)
T ss_pred HHHHHHHHHHHHHHhcccchhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhc
Confidence 99999999999988873210 000 111100 000112344445566666666665554
Q ss_pred CCCCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCH
Q 007461 251 KLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEK-GILEDPSIYASLICSFASITEVKLAEELFKEAEEKGMLRDP 329 (603)
Q Consensus 251 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 329 (603)
+.... ..+..|+....-.. ++-..+|+.+.-. -.+.+......+.........-+.....-.+..-.+..-+.
T Consensus 171 D~~c~----Ea~~~lvs~~mlt~--~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~ 244 (611)
T KOG1173|consen 171 DAKCF----EAFEKLVSAHMLTA--QEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENL 244 (611)
T ss_pred chhhH----HHHHHHHHHHhcch--hHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcH
Confidence 44321 12222332221111 1112222211000 00112222222222110000000000000000111234466
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 007461 330 EVCLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINAY 409 (603)
Q Consensus 330 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 409 (603)
.+.....+-+...+++.+..++++.+.+.++ +....+..-|..+...|+..+-..+=.+|.+.- +-...+|-++.-.|
T Consensus 245 dll~~~ad~~y~~c~f~~c~kit~~lle~dp-fh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~YY 322 (611)
T KOG1173|consen 245 DLLAEKADRLYYGCRFKECLKITEELLEKDP-FHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGCYY 322 (611)
T ss_pred HHHHHHHHHHHHcChHHHHHHHhHHHHhhCC-CCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHHHH
Confidence 6777777888899999999999999998877 556667777889999999998888888888764 44567898998888
Q ss_pred HhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHH
Q 007461 410 CRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVE 489 (603)
Q Consensus 410 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~ 489 (603)
...|+..+|.+.|.+....+ +.-...|-.....|+-.|..++|+..+...-+. ++-...-+--+.--|.+.++.+.|.
T Consensus 323 l~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLAe 400 (611)
T KOG1173|consen 323 LMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLAE 400 (611)
T ss_pred HHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHHH
Confidence 88999999999999987654 233567889999999999999999998877653 1111111223445688899999999
Q ss_pred HHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC--CCHHHHHHHHHHHHccCCHHHHHHHH
Q 007461 490 KLWKEMERRKVTP-DKVSYTTVISAYNRAREFDMCVKFYNEFRMN----GGV--IDRAIAGIMVGVFSKLSQIEELVKLL 562 (603)
Q Consensus 490 ~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~ 562 (603)
+.|.+.. ++-| |+..++-+.-.....+.+.+|..+|+..+.. +.+ .-..+++.|..+|.+.+++++|+..+
T Consensus 401 ~Ff~~A~--ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~ 478 (611)
T KOG1173|consen 401 KFFKQAL--AIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYY 478 (611)
T ss_pred HHHHHHH--hcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHH
Confidence 9999998 4445 5566777777777789999999999987632 111 13456889999999999999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHhh
Q 007461 563 QDMKSEGTKLDERLYHSAMNALRDAGLQMQAQWLQQN 599 (603)
Q Consensus 563 ~~m~~~g~~~~~~~~~~ll~a~~~~g~~~~a~~~~~~ 599 (603)
++.+.. .+-|..++.++.-.+...|+.+.|...+.+
T Consensus 479 q~aL~l-~~k~~~~~asig~iy~llgnld~Aid~fhK 514 (611)
T KOG1173|consen 479 QKALLL-SPKDASTHASIGYIYHLLGNLDKAIDHFHK 514 (611)
T ss_pred HHHHHc-CCCchhHHHHHHHHHHHhcChHHHHHHHHH
Confidence 999876 356888999998899999999999988765
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.1e-07 Score=93.28 Aligned_cols=294 Identities=11% Similarity=0.055 Sum_probs=201.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcC--
Q 007461 123 LIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLH-- 200 (603)
Q Consensus 123 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-- 200 (603)
....+...|++++|++.++.-... +.............+.+.|+.++|..++..+...+|.+..-|..+..+.....
T Consensus 10 ~~~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~ 88 (517)
T PF12569_consen 10 KNSILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQL 88 (517)
T ss_pred HHHHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhccc
Confidence 345667889999999999875433 33334555667778889999999999999999998888888888888773333
Q ss_pred ---cHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCH-HHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccCCHH
Q 007461 201 ---MYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDS-EKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAF 276 (603)
Q Consensus 201 ---~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 276 (603)
..+...++++++...- |.......+.-.+..-..+ ..+...+..+..+|+++ +++.|-..|....+.+
T Consensus 89 ~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs------lF~~lk~Ly~d~~K~~ 160 (517)
T PF12569_consen 89 SDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS------LFSNLKPLYKDPEKAA 160 (517)
T ss_pred ccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch------HHHHHHHHHcChhHHH
Confidence 4677778888876653 3333333332222221222 23455566666777654 6888888887766666
Q ss_pred HHHHHHHHHHHC----C----------CCCCHH--HHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 007461 277 EALKFFRDMKEK----G----------ILEDPS--IYASLICSFASITEVKLAEELFKEAEEKGMLRDPEVCLKLVLMYI 340 (603)
Q Consensus 277 ~A~~~~~~m~~~----g----------~~p~~~--~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 340 (603)
-..+++...... + -.|... ++..+...|...|+.++|.+.++..+++. +..+..|..-.+.|-
T Consensus 161 ~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt~~ely~~KarilK 239 (517)
T PF12569_consen 161 IIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT-PTLVELYMTKARILK 239 (517)
T ss_pred HHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHH
Confidence 666666665432 1 122332 33445566778889999999988888875 224677888888888
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH--------HHHHHHHHHhc
Q 007461 341 EEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQVT--------YASIINAYCRI 412 (603)
Q Consensus 341 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~--------~~~ll~~~~~~ 412 (603)
+.|++++|.+.++.....+. -|..+-+..+..+.+.|+.++|.+++....+.+..|-... ..-...+|.+.
T Consensus 240 h~G~~~~Aa~~~~~Ar~LD~-~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~ 318 (517)
T PF12569_consen 240 HAGDLKEAAEAMDEARELDL-ADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQ 318 (517)
T ss_pred HCCCHHHHHHHHHHHHhCCh-hhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHH
Confidence 89999999998888888877 4777777778888888888888888888877664332211 13345677788
Q ss_pred CChHHHHHHHHHHHH
Q 007461 413 ALYSKAEKVFIEMQQ 427 (603)
Q Consensus 413 g~~~~a~~~~~~~~~ 427 (603)
|++..|++-|..+.+
T Consensus 319 ~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 319 GDYGLALKRFHAVLK 333 (517)
T ss_pred hhHHHHHHHHHHHHH
Confidence 888888777766654
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.4e-07 Score=91.03 Aligned_cols=448 Identities=10% Similarity=0.050 Sum_probs=213.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHHH
Q 007461 125 RYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYS 204 (603)
Q Consensus 125 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 204 (603)
+.+...|++++|.+....+...+ +.+...+..=+-++.+.+++++|+.+.+.-......+... ..-.-+.-+.+..++
T Consensus 20 n~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~-fEKAYc~Yrlnk~De 97 (652)
T KOG2376|consen 20 NRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFF-FEKAYCEYRLNKLDE 97 (652)
T ss_pred HHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhh-HHHHHHHHHcccHHH
Confidence 33445556666666666655444 3444455555555555666666654333211100001100 111112225556666
Q ss_pred HHHHHHHHHhCCCCC-ChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccCCHHHHHHHHH
Q 007461 205 TILVYEKMKSAGIVL-DSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFR 283 (603)
Q Consensus 205 a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 283 (603)
|+..++ |..+ |..+...-...+.+.|++++|..+|+.+...+..... ...-..++.+ + .+... +
T Consensus 98 alk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d--~~~r~nl~a~----~---a~l~~-~ 162 (652)
T KOG2376|consen 98 ALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQD--EERRANLLAV----A---AALQV-Q 162 (652)
T ss_pred HHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHH--HHHHHHHHHH----H---HhhhH-H
Confidence 666655 2222 2224444455566666666666666666554433211 1111111110 0 00000 1
Q ss_pred HHHHCCCCCCHHHHHHHHH---HHHccCCHHHHHHHHHHHHHcC-------------CCCCH-HHHHHHHHHHHHcCCHH
Q 007461 284 DMKEKGILEDPSIYASLIC---SFASITEVKLAEELFKEAEEKG-------------MLRDP-EVCLKLVLMYIEEGLVE 346 (603)
Q Consensus 284 ~m~~~g~~p~~~~~~~ll~---~~~~~g~~~~a~~~~~~~~~~~-------------~~~~~-~~~~~l~~~~~~~g~~~ 346 (603)
.+......| ..+|..+.+ .+...|++.+|+++++...+.+ +..+. .+-..|...+-..|+.+
T Consensus 163 ~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ 241 (652)
T KOG2376|consen 163 LLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTA 241 (652)
T ss_pred HHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchH
Confidence 122222222 223433333 2335667777777776663211 00011 11223455566778888
Q ss_pred HHHHHHHHHHhCCCCCCHhhH----HHHHHHHHhcCCHH-HHHHHHHHHHHcCC----------CCCHHHH-HHHHHHHH
Q 007461 347 KTLDVVESMKNAKLKISDCIS----CAIVNGFSKRRGYW-AAVKVYEQLISQGC----------IPGQVTY-ASIINAYC 410 (603)
Q Consensus 347 ~a~~~~~~~~~~~~~~~~~~~----~~li~~~~~~~~~~-~a~~~~~~m~~~g~----------~p~~~~~-~~ll~~~~ 410 (603)
+|..++..+...+. +|.... |.++..-....-++ .++..++....... .-..+.. +.++..+.
T Consensus 242 ea~~iy~~~i~~~~-~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~t 320 (652)
T KOG2376|consen 242 EASSIYVDIIKRNP-ADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFT 320 (652)
T ss_pred HHHHHHHHHHHhcC-CCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 88888887777665 233221 22221111111111 12222222111000 0000111 12222222
Q ss_pred hcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHc--cCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHH
Q 007461 411 RIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGK--TGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQV 488 (603)
Q Consensus 411 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~--~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a 488 (603)
+..+.+.++-..... ..| ...+.+++..+.+ ...+.++.+++...-+..-.-...+.-.++......|+++.|
T Consensus 321 --nk~~q~r~~~a~lp~--~~p-~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A 395 (652)
T KOG2376|consen 321 --NKMDQVRELSASLPG--MSP-ESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVA 395 (652)
T ss_pred --hhHHHHHHHHHhCCc--cCc-hHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHH
Confidence 223333333322221 123 2344444444433 224667777777776652111234455566677788999999
Q ss_pred HHHHH--------HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCCH----HHHHHHHHHHHccCC
Q 007461 489 EKLWK--------EMERRKVTPDKVSYTTVISAYNRAREFDMCVKFYNEFRMNGG--VIDR----AIAGIMVGVFSKLSQ 554 (603)
Q Consensus 489 ~~~~~--------~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~--~~~~----~~~~~l~~~~~~~g~ 554 (603)
.+++. .+.+.+..|- +...+...+.+.++-+.|..++.+.+..-. .+.. .++.-....-.+.|+
T Consensus 396 ~~il~~~~~~~~ss~~~~~~~P~--~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~ 473 (652)
T KOG2376|consen 396 LEILSLFLESWKSSILEAKHLPG--TVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGN 473 (652)
T ss_pred HHHHHHHhhhhhhhhhhhccChh--HHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCc
Confidence 98888 5555555553 445666667777777777777776654210 1111 234444555567799
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHhhc
Q 007461 555 IEELVKLLQDMKSEGTKLDERLYHSAMNALRDAGLQMQAQWLQQNF 600 (603)
Q Consensus 555 ~~~A~~~~~~m~~~g~~~~~~~~~~ll~a~~~~g~~~~a~~~~~~~ 600 (603)
-++|..+++++.+. .++|..+...++.+|.... .+.|..+-+.+
T Consensus 474 ~~ea~s~leel~k~-n~~d~~~l~~lV~a~~~~d-~eka~~l~k~L 517 (652)
T KOG2376|consen 474 EEEASSLLEELVKF-NPNDTDLLVQLVTAYARLD-PEKAESLSKKL 517 (652)
T ss_pred hHHHHHHHHHHHHh-CCchHHHHHHHHHHHHhcC-HHHHHHHhhcC
Confidence 99999999999875 3578888888888887754 46666555544
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.29 E-value=7.7e-07 Score=88.85 Aligned_cols=202 Identities=15% Similarity=0.104 Sum_probs=87.9
Q ss_pred chhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccHHHHHH
Q 007461 185 ALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKI 264 (603)
Q Consensus 185 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 264 (603)
++..|..+.-+....|+++.+.+.|++....-+ -....|..+...|...|.-..|..+++........|+.+ ..+-.
T Consensus 322 d~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~-~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~--s~~Lm 398 (799)
T KOG4162|consen 322 DAAIFDHLTFALSRCGQFEVLAEQFEQALPFSF-GEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDI--SVLLM 398 (799)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh-hhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcc--hHHHH
Confidence 445555555555555555555555555443222 133445555555555555555555555443333222111 11211
Q ss_pred HHHHH-hccCCHHHHHHHHHHHHHC--CC--CCCHHHHHHHHHHHHcc-----------CCHHHHHHHHHHHHHcCCCCC
Q 007461 265 LCDSL-GKSGRAFEALKFFRDMKEK--GI--LEDPSIYASLICSFASI-----------TEVKLAEELFKEAEEKGMLRD 328 (603)
Q Consensus 265 li~~~-~~~g~~~~A~~~~~~m~~~--g~--~p~~~~~~~ll~~~~~~-----------g~~~~a~~~~~~~~~~~~~~~ 328 (603)
.-..| .+.+..++++++-.+.... +. ......|..+.-+|... ....++.+.+++..+.+. .|
T Consensus 399 asklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~-~d 477 (799)
T KOG4162|consen 399 ASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDP-TD 477 (799)
T ss_pred HHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCC-CC
Confidence 12222 2234444444444444331 10 01122222222222210 012334455555554432 13
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 007461 329 PEVCLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQL 390 (603)
Q Consensus 329 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 390 (603)
+.+...+.--|+..++++.|.+...+..+.+...+...|..+.-.+...+++.+|+.+.+..
T Consensus 478 p~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~a 539 (799)
T KOG4162|consen 478 PLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAA 539 (799)
T ss_pred chHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 33333334445555555555555555555544445555555555555555555555555543
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.28 E-value=4.7e-10 Score=99.71 Aligned_cols=228 Identities=11% Similarity=0.048 Sum_probs=115.8
Q ss_pred HHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCC
Q 007461 157 RLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGD 236 (603)
Q Consensus 157 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~ 236 (603)
.+.+.|.+.|.+.+|.+.|+.-... .+-+.+|..|-+.|.+.++++.|+.++.+-++. .+-|+....-+.+.+-..++
T Consensus 228 Q~gkCylrLgm~r~AekqlqssL~q-~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam~~ 305 (478)
T KOG1129|consen 228 QMGKCYLRLGMPRRAEKQLQSSLTQ-FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAMEQ 305 (478)
T ss_pred HHHHHHHHhcChhhhHHHHHHHhhc-CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHHHh
Confidence 3445555555555555555544432 234445555555555555555555555554443 12233233344455555555
Q ss_pred HHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Q 007461 237 SEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEKGILEDPSIYASLICSFASITEVKLAEEL 316 (603)
Q Consensus 237 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~ 316 (603)
.++|.++++...+.... ++++...+...|.-.++++-|+..|+++++.|+. +...|+.+.-+|.-.++++.+..-
T Consensus 306 ~~~a~~lYk~vlk~~~~----nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~s 380 (478)
T KOG1129|consen 306 QEDALQLYKLVLKLHPI----NVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPS 380 (478)
T ss_pred HHHHHHHHHHHHhcCCc----cceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHH
Confidence 55555555555443322 2234444445555555555555555555555544 444555555555555555555555
Q ss_pred HHHHHHcCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007461 317 FKEAEEKGMLRD--PEVCLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLIS 392 (603)
Q Consensus 317 ~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 392 (603)
|......--.|+ ..+|-.+.......|++..|.+.|+-....+.. +...+|.|.-.-.+.|+.++|..++.....
T Consensus 381 f~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 381 FQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred HHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 555544322222 334555555555555555555555555554442 334555555555556666666666555544
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.9e-11 Score=80.64 Aligned_cols=48 Identities=33% Similarity=0.618 Sum_probs=21.7
Q ss_pred CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 007461 467 PNVWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDKVSYTTVISAY 514 (603)
Q Consensus 467 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 514 (603)
||+.+||++|++|++.|++++|.++|++|.+.|+.||..||+.+|++|
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~ 48 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGL 48 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 344444444444444444444444444444444444444444444444
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.3e-06 Score=87.30 Aligned_cols=377 Identities=13% Similarity=0.058 Sum_probs=256.3
Q ss_pred CCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCH
Q 007461 215 AGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEKGILEDP 294 (603)
Q Consensus 215 ~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 294 (603)
..+.-|...|..+.-+..++|+++.+.+.|++....-... .+.|+.+...|...|.-..|+.++++-....-.|+.
T Consensus 317 ~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~----~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~ 392 (799)
T KOG4162|consen 317 KKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGE----HERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSD 392 (799)
T ss_pred hhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhh----HHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCc
Confidence 3455688899999999999999999999999887654443 357999999999999999999999887765434544
Q ss_pred HH-HHHHHHHHH-ccCCHHHHHHHHHHHHHc--CC--CCCHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHh
Q 007461 295 SI-YASLICSFA-SITEVKLAEELFKEAEEK--GM--LRDPEVCLKLVLMYIEE-----------GLVEKTLDVVESMKN 357 (603)
Q Consensus 295 ~~-~~~ll~~~~-~~g~~~~a~~~~~~~~~~--~~--~~~~~~~~~l~~~~~~~-----------g~~~~a~~~~~~~~~ 357 (603)
.+ +...-..|. +.+.++++...-.++... +. ...+..+..+.-+|... ....++++.+++..+
T Consensus 393 ~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~ 472 (799)
T KOG4162|consen 393 ISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQ 472 (799)
T ss_pred chHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHh
Confidence 43 333334444 567777777777776652 11 22344555555555432 123567788888887
Q ss_pred CCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCc----
Q 007461 358 AKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQK-GFDK---- 432 (603)
Q Consensus 358 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-~~~~---- 432 (603)
.+.. |..+.-.+.--|+..++.+.|++..++..+.+-.-+...|..+.-.+...+++.+|+.+.+..... |...
T Consensus 473 ~d~~-dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~ 551 (799)
T KOG4162|consen 473 FDPT-DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMD 551 (799)
T ss_pred cCCC-CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhch
Confidence 7764 333444455567888999999999999999866778888888888888899999999998876543 2100
Q ss_pred --------------CHhhHHHHHHHHHc---------c--------------CCHHHHHHHHHHH--------HHcC---
Q 007461 433 --------------CVVAYSSMVAMYGK---------T--------------GRIRDAMWLVAKM--------KAKG--- 464 (603)
Q Consensus 433 --------------~~~~~~~li~~~~~---------~--------------g~~~~A~~~~~~m--------~~~~--- 464 (603)
...|...++...-. . ++..+|.+....+ ...|
T Consensus 552 ~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~ 631 (799)
T KOG4162|consen 552 GKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSEL 631 (799)
T ss_pred hhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhccccc
Confidence 11122222222110 0 0111111111100 0000
Q ss_pred ------CCC--C------HhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007461 465 ------CEP--N------VWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNRAREFDMCVKFYNEF 530 (603)
Q Consensus 465 ------~~p--~------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 530 (603)
+.| + ...|......+.+.++.++|...+.+..... .-....|......+...|.+++|.+.|...
T Consensus 632 ~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~A 710 (799)
T KOG4162|consen 632 KLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVA 710 (799)
T ss_pred ccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHH
Confidence 011 1 1234555667778888888888888876432 223455666667788889999999999998
Q ss_pred HHCCCCCCHHHHHHHHHHHHccCCHHHHHH--HHHHHHhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHhh
Q 007461 531 RMNGGVIDRAIAGIMVGVFSKLSQIEELVK--LLQDMKSEGTKLDERLYHSAMNALRDAGLQMQAQWLQQN 599 (603)
Q Consensus 531 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~--~~~~m~~~g~~~~~~~~~~ll~a~~~~g~~~~a~~~~~~ 599 (603)
...++. +..+..++..++.+.|+..-|.. ++..+.+.+ +.+...|..+...+.+.|+.+.|.+.++.
T Consensus 711 l~ldP~-hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~a 779 (799)
T KOG4162|consen 711 LALDPD-HVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQA 779 (799)
T ss_pred HhcCCC-CcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHHH
Confidence 875433 45678899999999998877777 999999865 45788999999999999999999988764
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.1e-11 Score=80.42 Aligned_cols=50 Identities=30% Similarity=0.597 Sum_probs=32.9
Q ss_pred cCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHh
Q 007461 432 KCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGR 481 (603)
Q Consensus 432 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 481 (603)
||..+||.+|++|++.|++++|.++|++|.+.|+.||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 56666666666666666666666666666666666666666666666653
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.3e-07 Score=85.61 Aligned_cols=300 Identities=11% Similarity=-0.021 Sum_probs=176.5
Q ss_pred CCCCHHHHHHHHHHHHc--cCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhh
Q 007461 290 ILEDPSIYASLICSFAS--ITEVKLAEELFKEAEEKG-MLRDPEVCLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCI 366 (603)
Q Consensus 290 ~~p~~~~~~~ll~~~~~--~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 366 (603)
+.|...+....+.+++. .++-..+...+-.+.... ++.|......+.+.+...|+.++|...|++....++- +...
T Consensus 190 ~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy-~i~~ 268 (564)
T KOG1174|consen 190 VPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPD-NVEA 268 (564)
T ss_pred cCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChh-hhhh
Confidence 34444444445555443 344444444444443332 4557777888888888888888888888887766542 2222
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHc
Q 007461 367 SCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGK 446 (603)
Q Consensus 367 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 446 (603)
.....-.+.+.|+.+....+...+.... +-....|-.-........+++.|+.+-++.++.+ +.+...|-.-...+..
T Consensus 269 MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~ 346 (564)
T KOG1174|consen 269 MDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIA 346 (564)
T ss_pred HHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHh
Confidence 3333344556777777666666655421 1111222222333445566777777777766654 4445555555566667
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH-HHHHh-cCCHHHHH
Q 007461 447 TGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDKVSYTTVI-SAYNR-AREFDMCV 524 (603)
Q Consensus 447 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li-~~~~~-~g~~~~a~ 524 (603)
.|++++|.-.|+..... -+-+...|..|++.|...|.+.+|.-+-++..+. ++-+..++..+. ..|.- ..--++|.
T Consensus 347 ~~R~~~A~IaFR~Aq~L-ap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAK 424 (564)
T KOG1174|consen 347 LERHTQAVIAFRTAQML-APYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAK 424 (564)
T ss_pred ccchHHHHHHHHHHHhc-chhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHH
Confidence 77777777777776653 1236677777777777777777777666665432 233444444442 22221 12236666
Q ss_pred HHHHHHHHCCCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHh
Q 007461 525 KFYNEFRMNGGVIDR-AIAGIMVGVFSKLSQIEELVKLLQDMKSEGTKLDERLYHSAMNALRDAGLQMQAQWLQQ 598 (603)
Q Consensus 525 ~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~a~~~~g~~~~a~~~~~ 598 (603)
+++++.... .|+- ...+.+.+.+...|+.++++.++++... ..||....+.|.+.+...+.+.+|+.-+.
T Consensus 425 kf~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~ 495 (564)
T KOG1174|consen 425 KFAEKSLKI--NPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYY 495 (564)
T ss_pred HHHHhhhcc--CCccHHHHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 666665553 3332 3455666677777777777777777664 35777777777777777777777766554
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.1e-08 Score=100.94 Aligned_cols=198 Identities=15% Similarity=0.183 Sum_probs=137.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHc-----CC-CC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHc-----CC-CcC-H
Q 007461 369 AIVNGFSKRRGYWAAVKVYEQLISQ-----GC-IP-GQVTYASIINAYCRIALYSKAEKVFIEMQQK-----GF-DKC-V 434 (603)
Q Consensus 369 ~li~~~~~~~~~~~a~~~~~~m~~~-----g~-~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-----~~-~~~-~ 434 (603)
.+...|...+++++|+.+|+++..- |- .| -..+++.|..+|.+.|++++|...+++..+. +. .|. .
T Consensus 246 ~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~ 325 (508)
T KOG1840|consen 246 ILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVA 325 (508)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHH
Confidence 3455566666666666666665431 21 11 2245667777788888888888777765432 21 122 2
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHc---CCCCC----HhHHHHHHHHHHhcCCHHHHHHHHHHHHhCC----C--C
Q 007461 435 VAYSSMVAMYGKTGRIRDAMWLVAKMKAK---GCEPN----VWIYNSLMDMHGRAKNLRQVEKLWKEMERRK----V--T 501 (603)
Q Consensus 435 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~----~--~ 501 (603)
..++.+...|...+++++|..+++...+. -..++ ..+++.|...|...|++++|++++++.+... - .
T Consensus 326 ~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~ 405 (508)
T KOG1840|consen 326 AQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKD 405 (508)
T ss_pred HHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcC
Confidence 34567777788889999999888876542 12222 4578899999999999999999999875431 1 1
Q ss_pred CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCC-CCH-HHHHHHHHHHHccCCHHHHHHHHHHHH
Q 007461 502 PD-KVSYTTVISAYNRAREFDMCVKFYNEFRM----NGGV-IDR-AIAGIMVGVFSKLSQIEELVKLLQDMK 566 (603)
Q Consensus 502 p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~----~~~~-~~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~ 566 (603)
+. ...++.+...|.+.+++++|.++|.+... .|.. |+. .+|..|...|.+.|++++|+++.+...
T Consensus 406 ~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 406 YGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred hhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 22 34578888999999999999999887643 3332 343 578899999999999999999988765
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.9e-07 Score=88.99 Aligned_cols=416 Identities=12% Similarity=0.141 Sum_probs=242.0
Q ss_pred HHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHH--HHc
Q 007461 157 RLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAY--YKI 234 (603)
Q Consensus 157 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~--~~~ 234 (603)
+=++.+.+.+++++|.+...+++...+.+..++..-+-++.+.+.|++|+.+.+.=.. ...+..-+ +=.+| .+.
T Consensus 17 t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~--~~~~~~~~--fEKAYc~Yrl 92 (652)
T KOG2376|consen 17 TDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGA--LLVINSFF--FEKAYCEYRL 92 (652)
T ss_pred HHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcch--hhhcchhh--HHHHHHHHHc
Confidence 3456677889999999999999999988999999999999999999999965543211 11111111 23444 478
Q ss_pred CCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCCHHHH
Q 007461 235 GDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEKGILE-DPSIYASLICSFASITEVKLA 313 (603)
Q Consensus 235 g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a 313 (603)
+..|+|...++.....+ ..+...-...+.+.|++++|+++|+.+.+.+..- |...-..++.+-... .+
T Consensus 93 nk~Dealk~~~~~~~~~-------~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l----~~ 161 (652)
T KOG2376|consen 93 NKLDEALKTLKGLDRLD-------DKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAAL----QV 161 (652)
T ss_pred ccHHHHHHHHhcccccc-------hHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhh----hH
Confidence 99999999988332221 2356666788999999999999999998765332 222222333222111 11
Q ss_pred HHHHHHHHHcCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHH--------hCCCCCCH-------hhHHHHHHHHHh
Q 007461 314 EELFKEAEEKGMLRD--PEVCLKLVLMYIEEGLVEKTLDVVESMK--------NAKLKISD-------CISCAIVNGFSK 376 (603)
Q Consensus 314 ~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~--------~~~~~~~~-------~~~~~li~~~~~ 376 (603)
. + +......|+ -..+-.....++..|++.+|+++++... +.+.. +. .+-.-|...+..
T Consensus 162 ~-~---~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~-eEeie~el~~IrvQlayVlQ~ 236 (652)
T KOG2376|consen 162 Q-L---LQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTN-EEEIEEELNPIRVQLAYVLQL 236 (652)
T ss_pred H-H---HHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccc-hhhHHHHHHHHHHHHHHHHHH
Confidence 1 1 112222231 2222334456778999999999999872 11111 11 123345566778
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHH----HHHHHHHHhcCCh-H-HHHHHHHHH------------HHcCCCcCHhhHH
Q 007461 377 RRGYWAAVKVYEQLISQGCIPGQVTY----ASIINAYCRIALY-S-KAEKVFIEM------------QQKGFDKCVVAYS 438 (603)
Q Consensus 377 ~~~~~~a~~~~~~m~~~g~~p~~~~~----~~ll~~~~~~g~~-~-~a~~~~~~~------------~~~~~~~~~~~~~ 438 (603)
.|+..+|..++...++.. .+|.... |.++ +.....++ + .++..++.. .... .-....-+
T Consensus 237 ~Gqt~ea~~iy~~~i~~~-~~D~~~~Av~~NNLv-a~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~q-k~~i~~N~ 313 (652)
T KOG2376|consen 237 QGQTAEASSIYVDIIKRN-PADEPSLAVAVNNLV-ALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQ-KQAIYRNN 313 (652)
T ss_pred hcchHHHHHHHHHHHHhc-CCCchHHHHHhcchh-hhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHH-HHHHHHHH
Confidence 999999999999999876 3454322 2222 22221111 1 111222211 1110 11111222
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHh-cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 007461 439 SMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGR-AKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNRA 517 (603)
Q Consensus 439 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~-~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 517 (603)
.++..| .+..+.+.++....... .|....=..+..++.. ......+.+++...-+....-........+......
T Consensus 314 ~lL~l~--tnk~~q~r~~~a~lp~~--~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~ 389 (652)
T KOG2376|consen 314 ALLALF--TNKMDQVRELSASLPGM--SPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQ 389 (652)
T ss_pred HHHHHH--hhhHHHHHHHHHhCCcc--CchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhc
Confidence 333333 34555555555544432 3443333333333322 224777888888776543222234566677778899
Q ss_pred CCHHHHHHHHH--------HHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhC------CCCCCHHHHHHHHHH
Q 007461 518 REFDMCVKFYN--------EFRMNGGVIDRAIAGIMVGVFSKLSQIEELVKLLQDMKSE------GTKLDERLYHSAMNA 583 (603)
Q Consensus 518 g~~~~a~~~~~--------~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~------g~~~~~~~~~~ll~a 583 (603)
|+++.|.+++. .+.+.+. .+.+...++..+.+.++.+-|..++.+..+. +-..-..++..+..-
T Consensus 390 gn~~~A~~il~~~~~~~~ss~~~~~~--~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f 467 (652)
T KOG2376|consen 390 GNPEVALEILSLFLESWKSSILEAKH--LPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEF 467 (652)
T ss_pred CCHHHHHHHHHHHhhhhhhhhhhhcc--ChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHH
Confidence 99999999999 4444333 3345556777778877766666666554431 111112334444444
Q ss_pred HHhcCcHHHHHHHHhhcc
Q 007461 584 LRDAGLQMQAQWLQQNFE 601 (603)
Q Consensus 584 ~~~~g~~~~a~~~~~~~~ 601 (603)
=.++|+.++|..+++++.
T Consensus 468 ~lr~G~~~ea~s~leel~ 485 (652)
T KOG2376|consen 468 KLRHGNEEEASSLLEELV 485 (652)
T ss_pred HHhcCchHHHHHHHHHHH
Confidence 457799999999999874
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.4e-09 Score=95.23 Aligned_cols=233 Identities=9% Similarity=0.022 Sum_probs=197.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcC
Q 007461 121 KLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLH 200 (603)
Q Consensus 121 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 200 (603)
+.+.+.|.+.|.+.+|.+-++...+. .|-+.||..|-+.|.+-.++..|+.++.+-.+.-|.++....-+.+.+-..+
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~ 304 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAME 304 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHH
Confidence 45788899999999999999988776 4778888889999999999999999999988887788888888888999999
Q ss_pred cHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccCCHHHHHH
Q 007461 201 MYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALK 280 (603)
Q Consensus 201 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 280 (603)
+.++|.+++....+... .++.....+...|.-.+++|.|...++++.+.|..+. ..|+.+.-+|.-.+++|-++.
T Consensus 305 ~~~~a~~lYk~vlk~~~-~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~sp----eLf~NigLCC~yaqQ~D~~L~ 379 (478)
T KOG1129|consen 305 QQEDALQLYKLVLKLHP-INVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSP----ELFCNIGLCCLYAQQIDLVLP 379 (478)
T ss_pred hHHHHHHHHHHHHhcCC-ccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCCh----HHHhhHHHHHHhhcchhhhHH
Confidence 99999999999888643 3777777888889999999999999999999888753 579999999999999999999
Q ss_pred HHHHHHHCCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 007461 281 FFRDMKEKGILED--PSIYASLICSFASITEVKLAEELFKEAEEKGMLRDPEVCLKLVLMYIEEGLVEKTLDVVESMKNA 358 (603)
Q Consensus 281 ~~~~m~~~g~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 358 (603)
.|++....--.|+ ...|-.+-......||+..|.+.|+.....+. .+...++.|.-.-.+.|++++|..++......
T Consensus 380 sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~-~h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 380 SFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDA-QHGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCc-chHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 9999887655554 35677787788889999999999998887653 36778888988899999999999999988776
Q ss_pred CCC
Q 007461 359 KLK 361 (603)
Q Consensus 359 ~~~ 361 (603)
.+.
T Consensus 459 ~P~ 461 (478)
T KOG1129|consen 459 MPD 461 (478)
T ss_pred Ccc
Confidence 543
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.16 E-value=3.7e-06 Score=77.89 Aligned_cols=266 Identities=12% Similarity=0.029 Sum_probs=118.8
Q ss_pred cHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 007461 258 STHMYKILCDSLGKSGRAFEALKFFRDMKEKGILEDPSI-YASLICSFASITEVKLAEELFKEAEEKGMLRDPEVCLKLV 336 (603)
Q Consensus 258 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~-~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 336 (603)
|+.....+.+.+...|+.++|+..|+..... .|+..+ .....-.+.+.|+.+....+...+.... ......|..-.
T Consensus 231 NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~ 307 (564)
T KOG1174|consen 231 NEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHA 307 (564)
T ss_pred cHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhh
Confidence 3455666666666666666666666665543 222211 1111112234555555555544444321 01122222222
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChH
Q 007461 337 LMYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIALYS 416 (603)
Q Consensus 337 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~ 416 (603)
.......+++.|+.+.++..+.+.. +...+-.-...+...+++++|.-.|+..+... +-+...|..++..|...|++.
T Consensus 308 ~~l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~k 385 (564)
T KOG1174|consen 308 QLLYDEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFK 385 (564)
T ss_pred hhhhhhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHH
Confidence 2333444555555555554444332 22223222334444555555555555544321 123445555555555555555
Q ss_pred HHHHHHHHHHHcCCCcCHhhHHHHH-HHHHcc-CCHHHHHHHHHHHHHcCCCCC-HhHHHHHHHHHHhcCCHHHHHHHHH
Q 007461 417 KAEKVFIEMQQKGFDKCVVAYSSMV-AMYGKT-GRIRDAMWLVAKMKAKGCEPN-VWIYNSLMDMHGRAKNLRQVEKLWK 493 (603)
Q Consensus 417 ~a~~~~~~~~~~~~~~~~~~~~~li-~~~~~~-g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~ 493 (603)
+|...-+...+. ++.+..+.+.+. ..+.-. .--++|.+++++-+.. .|+ ....+.+...+...|..+.++.+++
T Consensus 386 EA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe 462 (564)
T KOG1174|consen 386 EANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYTPAVNLIAELCQVEGPTKDIIKLLE 462 (564)
T ss_pred HHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccHHHHHHHHHHHHhhCccchHHHHHH
Confidence 555444443332 122333333321 112111 1124455555544432 333 2233444444555555555555555
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 007461 494 EMERRKVTPDKVSYTTVISAYNRAREFDMCVKFYNEFRMN 533 (603)
Q Consensus 494 ~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 533 (603)
+... ..||....+.|.+.+...+.+++|++.|......
T Consensus 463 ~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~ 500 (564)
T KOG1174|consen 463 KHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQ 500 (564)
T ss_pred HHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 5542 2455555555555555555555555555555443
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=6.6e-08 Score=91.59 Aligned_cols=216 Identities=11% Similarity=-0.085 Sum_probs=143.6
Q ss_pred HHHHHHHHHHhhCCCCCCC--HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHH
Q 007461 98 ELAYDYYNEAKKLPEFRPE--KSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLL 175 (603)
Q Consensus 98 ~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 175 (603)
+.++.-+.+++......|+ ...|..+...+.+.|++++|...|+...+.. +.+...|+.+...+...|++++|...|
T Consensus 43 e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~~~ 121 (296)
T PRK11189 43 EVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYEAF 121 (296)
T ss_pred HHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 3477777777754333333 3457788888889999999999999988876 567888999999999999999999999
Q ss_pred HHHHhcCCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC
Q 007461 176 QVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDST 255 (603)
Q Consensus 176 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 255 (603)
+...+..|.+..+|..+...+...|++++|++.|+...+.+ |+..........+...++.++|...|++.......+
T Consensus 122 ~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~~~~- 198 (296)
T PRK11189 122 DSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEKLDKE- 198 (296)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCcc-
Confidence 99998888888888889988999999999999999888754 332222222223445678888988886654332111
Q ss_pred CccHHHHHHHHHHHhccCCHHHHHHHHHHHHHC---CC--CC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHcC
Q 007461 256 PFSTHMYKILCDSLGKSGRAFEALKFFRDMKEK---GI--LE-DPSIYASLICSFASITEVKLAEELFKEAEEKG 324 (603)
Q Consensus 256 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~--~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 324 (603)
.|.. .......|+..++ +.+..+.+. .+ .| ....|..+...+.+.|+.++|...|+.+.+.+
T Consensus 199 -----~~~~-~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 199 -----QWGW-NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred -----ccHH-HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 1221 1222234444333 244444321 11 11 12356666666666777777777777666654
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.14 E-value=5.5e-08 Score=82.88 Aligned_cols=199 Identities=9% Similarity=-0.079 Sum_probs=161.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhh
Q 007461 119 TLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNK 198 (603)
Q Consensus 119 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 198 (603)
+.-.|.-.|...|+...|..-+++..+.+ +.+..+|..+...|-+.|+.+.|.+.|++.....+.+..+.|.....+|.
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~ 115 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHh
Confidence 44556778889999999999999998876 55677888888889999999999999999999888888999999999999
Q ss_pred cCcHHHHHHHHHHHHhCCC-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccCCHHH
Q 007461 199 LHMYYSTILVYEKMKSAGI-VLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFE 277 (603)
Q Consensus 199 ~~~~~~a~~~~~~m~~~~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 277 (603)
.|++++|.+.|++....-. .--..+|..+.-+..+.|+.+.|.+.|++..+.++...+ +.-.+.....+.|++..
T Consensus 116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~----~~l~~a~~~~~~~~y~~ 191 (250)
T COG3063 116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPP----ALLELARLHYKAGDYAP 191 (250)
T ss_pred CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCCh----HHHHHHHHHHhcccchH
Confidence 9999999999998877532 123457888888888899999999999988877765433 57778888888999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 007461 278 ALKFFRDMKEKGILEDPSIYASLICSFASITEVKLAEELFKEAEEK 323 (603)
Q Consensus 278 A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 323 (603)
|...++.....+. ++..+.-..|+.-...|+.+.+.+.=..+.+.
T Consensus 192 Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~ 236 (250)
T COG3063 192 ARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL 236 (250)
T ss_pred HHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 9888888877765 78888888888888888888777766665553
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.13 E-value=4.1e-07 Score=89.69 Aligned_cols=192 Identities=9% Similarity=-0.067 Sum_probs=113.7
Q ss_pred CCChHHHHHHHHHHhhCCCCCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH---HHHHHHccCChH
Q 007461 94 PQTQELAYDYYNEAKKLPEFRPEK-STLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSR---LVASCVRARKFK 169 (603)
Q Consensus 94 ~~~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---ll~~~~~~~~~~ 169 (603)
++.++ +.+.+....+...-.++. .........+...|++++|..+++...+.. +.+...+.. ........+...
T Consensus 20 ~~~~~-~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~~~~~~~~~~~~~~ 97 (355)
T cd05804 20 GERPA-AAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKLHLGAFGLGDFSGMRD 97 (355)
T ss_pred CCcch-HHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhHHHHHhcccccCch
Confidence 34443 455555544332112222 122223345566788888888888877664 344444442 111112234555
Q ss_pred HHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 007461 170 IANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKS 249 (603)
Q Consensus 170 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 249 (603)
.+.+.++......+........+...+...|++++|...+++..+.... +...+..+...+...|++++|...+++...
T Consensus 98 ~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~-~~~~~~~la~i~~~~g~~~eA~~~l~~~l~ 176 (355)
T cd05804 98 HVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPD-DAWAVHAVAHVLEMQGRFKEGIAFMESWRD 176 (355)
T ss_pred hHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHhhhh
Confidence 5555555422222334455556667778888888888888888776422 456677777888888888888888887765
Q ss_pred CCCCCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 007461 250 RKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEK 288 (603)
Q Consensus 250 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 288 (603)
....+.......|..+...+...|++++|+++|++....
T Consensus 177 ~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~ 215 (355)
T cd05804 177 TWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAP 215 (355)
T ss_pred ccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence 443222212234556777888888888888888887543
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.13 E-value=5.7e-08 Score=95.98 Aligned_cols=249 Identities=17% Similarity=0.153 Sum_probs=139.5
Q ss_pred chhhHHHHHhhhhhcCcHHHHHHHHHHHHhC-----C-CCCChhhH-HHHHHHHHHcCCHHHHHHHHHHHHhCC----CC
Q 007461 185 ALLAFNSAMGGYNKLHMYYSTILVYEKMKSA-----G-IVLDSGCY-CQIMEAYYKIGDSEKVAALFLECKSRK----LD 253 (603)
Q Consensus 185 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-----~-~~p~~~~~-~~ll~~~~~~g~~~~a~~~~~~~~~~~----~~ 253 (603)
-..+...+...|...|++++|..++...++. | ..|.+.+. +.+...|...+++++|..+|+++...- ..
T Consensus 198 ~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~ 277 (508)
T KOG1840|consen 198 RLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGE 277 (508)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCC
Confidence 3445556888899999999999988876653 2 13343333 347778889999999999998876421 12
Q ss_pred CCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHC-----CCC-CCHH-HHHHHHHHHHccCCHHHHHHHHHHHHHcCCC
Q 007461 254 STPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEK-----GIL-EDPS-IYASLICSFASITEVKLAEELFKEAEEKGML 326 (603)
Q Consensus 254 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g~~-p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 326 (603)
..+.-..+++.|...|.+.|++++|...+++..+. |.. |+.. .++.+...+...+++++|..+++...+.-
T Consensus 278 ~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~-- 355 (508)
T KOG1840|consen 278 DHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIY-- 355 (508)
T ss_pred CCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH--
Confidence 22233567888999999999999999888776532 111 1111 23444445555566666666655443320
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CC--CC-CH
Q 007461 327 RDPEVCLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLISQ----GC--IP-GQ 399 (603)
Q Consensus 327 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~--~p-~~ 399 (603)
.......-..-..+++.|...|...|++++|.+++++.... +. .+ ..
T Consensus 356 --------------------------~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~ 409 (508)
T KOG1840|consen 356 --------------------------LDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVG 409 (508)
T ss_pred --------------------------HhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhh
Confidence 00000000001123444444444444444444444443321 00 11 12
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHH----cC--CCcCHhhHHHHHHHHHccCCHHHHHHHHHHHH
Q 007461 400 VTYASIINAYCRIALYSKAEKVFIEMQQ----KG--FDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMK 461 (603)
Q Consensus 400 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~----~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 461 (603)
..++.+...|.+.+..++|.++|.+... .| .+....+|..|...|.+.|++++|.++.+...
T Consensus 410 ~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 410 KPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 3445555666666666666666654332 12 12234566667777777777777776666554
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=8.3e-08 Score=90.92 Aligned_cols=219 Identities=9% Similarity=-0.029 Sum_probs=139.5
Q ss_pred CCHHHHHHHHHHHHhCC-CCCC--HHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHH
Q 007461 131 KKWDSIVSLSEDFKIYN-VLPD--AHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTIL 207 (603)
Q Consensus 131 ~~~~~a~~~~~~~~~~~-~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 207 (603)
+..+.++.-+.++.... ..|+ ...|..+...+...|+.+.|...|++..+..|.+..+|+.+...+...|++++|..
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 34556666666666432 1222 34566777778888999999999998888888888889999999999999999999
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 007461 208 VYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKE 287 (603)
Q Consensus 208 ~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 287 (603)
.|++..+.... +..++..+..++...|++++|.+.|+.....++... ........+...+++++|.+.|.+...
T Consensus 120 ~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~-----~~~~~~~l~~~~~~~~~A~~~l~~~~~ 193 (296)
T PRK11189 120 AFDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDP-----YRALWLYLAESKLDPKQAKENLKQRYE 193 (296)
T ss_pred HHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 99888875432 456777788888888899999988888877654321 011112223456778888888866553
Q ss_pred CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHc---CC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 007461 288 KGILEDPSIYASLICSFASITEVKLAEELFKEAEEK---GM---LRDPEVCLKLVLMYIEEGLVEKTLDVVESMKNAKL 360 (603)
Q Consensus 288 ~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 360 (603)
.. .|+...+ .+.. ...|+...+ +.+..+.+. .. +.....|..+...+.+.|++++|...|++..+.++
T Consensus 194 ~~-~~~~~~~-~~~~--~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~ 267 (296)
T PRK11189 194 KL-DKEQWGW-NIVE--FYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV 267 (296)
T ss_pred hC-CccccHH-HHHH--HHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 32 2322221 2222 234444333 233333321 11 01234566677777777777777777777776654
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.07 E-value=2e-07 Score=79.50 Aligned_cols=195 Identities=16% Similarity=0.030 Sum_probs=96.8
Q ss_pred HHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHh
Q 007461 191 SAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLG 270 (603)
Q Consensus 191 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~ 270 (603)
.|.-+|...|++..|..-+++.++.+.. +..+|..+...|-+.|+.+.|.+-|+......+.. ..+.|.....+|
T Consensus 40 qLal~YL~~gd~~~A~~nlekAL~~DPs-~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~----GdVLNNYG~FLC 114 (250)
T COG3063 40 QLALGYLQQGDYAQAKKNLEKALEHDPS-YYLAHLVRAHYYQKLGENDLADESYRKALSLAPNN----GDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCc----cchhhhhhHHHH
Confidence 3444444445555555555544443322 33344444445555555555555555444433322 123455555555
Q ss_pred ccCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 007461 271 KSGRAFEALKFFRDMKEKGILE-DPSIYASLICSFASITEVKLAEELFKEAEEKGMLRDPEVCLKLVLMYIEEGLVEKTL 349 (603)
Q Consensus 271 ~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 349 (603)
..|++++|...|++....-..+ -..+|..+.-+..+.|+.+.|...|+..++... ..+...-.+.....+.|++-.|.
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp-~~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDP-QFPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCc-CCChHHHHHHHHHHhcccchHHH
Confidence 5555555555555554432222 223444444444555555555555555555432 13344445555556666666666
Q ss_pred HHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007461 350 DVVESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLIS 392 (603)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 392 (603)
..++.....+. ++..+.-..|..-...|+.+.+-++=.++.+
T Consensus 194 ~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 194 LYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 66666555555 5555555555555556666655555555544
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.07 E-value=3.2e-07 Score=81.02 Aligned_cols=352 Identities=14% Similarity=0.015 Sum_probs=179.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhc
Q 007461 120 LKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKL 199 (603)
Q Consensus 120 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 199 (603)
+.+.+.-+.+..+++.|++++....+.. +.+....+.|.-.|....++..|-..++++....|.-..--..-...+-+.
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A 91 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKA 91 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHh
Confidence 4445555555666666666666555543 224445555555555666666666666666554432211111223334445
Q ss_pred CcHHHHHHHHHHHHhCCCCCChhhHHHHHH--HHHHcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccCCHHH
Q 007461 200 HMYYSTILVYEKMKSAGIVLDSGCYCQIME--AYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFE 277 (603)
Q Consensus 200 ~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~--~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 277 (603)
+.+..|+.+...|.+. |+...-..-+. .....+|+..+..+.++....+.. .+.+.......+.|++++
T Consensus 92 ~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~A------d~~in~gCllykegqyEa 162 (459)
T KOG4340|consen 92 CIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEA------DGQINLGCLLYKEGQYEA 162 (459)
T ss_pred cccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCcc------chhccchheeeccccHHH
Confidence 5666666666555432 11111111111 122456677777777766543322 234445555667778888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHH----HHHHHHHHHcCCHHHHHHHHH
Q 007461 278 ALKFFRDMKEKGILEDPSIYASLICSFASITEVKLAEELFKEAEEKGMLRDPEVC----LKLVLMYIEEGLVEKTLDVVE 353 (603)
Q Consensus 278 A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~g~~~~a~~~~~ 353 (603)
|++-|+...+-|---....|+..+.. .+.|+.+.|.+...+++++|+...+..- +-.++. -..|+. .
T Consensus 163 AvqkFqaAlqvsGyqpllAYniALaH-y~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDv-rsvgNt---~---- 233 (459)
T KOG4340|consen 163 AVQKFQAALQVSGYQPLLAYNLALAH-YSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDV-RSVGNT---L---- 233 (459)
T ss_pred HHHHHHHHHhhcCCCchhHHHHHHHH-HhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCch-hcccch---H----
Confidence 88877777665433344556655443 3567777777777777777643221110 000000 000000 0
Q ss_pred HHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCc
Q 007461 354 SMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLISQ-GCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQKGFDK 432 (603)
Q Consensus 354 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 432 (603)
.|...++ ...+|.-...+.+.++++.|.+.+-.|.-. .-..|++|...+.-. ...+++....+-+.-+.+.+ +-
T Consensus 234 ~lh~Sal---~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~n-Pf 308 (459)
T KOG4340|consen 234 VLHQSAL---VEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQN-PF 308 (459)
T ss_pred HHHHHHH---HHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcC-CC
Confidence 0000000 112444444556677777777777776432 123466666554322 23355666666666666654 34
Q ss_pred CHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCC-CCCHhHHHHHHHHHH-hcCCHHHHHHHHHHHH
Q 007461 433 CVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGC-EPNVWIYNSLMDMHG-RAKNLRQVEKLWKEME 496 (603)
Q Consensus 433 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~~~~~li~~~~-~~g~~~~a~~~~~~m~ 496 (603)
...||..++-.|||..-++-|-.++.+-...-. -.+...|+ |++++. ..-..++|++-+..+.
T Consensus 309 P~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La 373 (459)
T KOG4340|consen 309 PPETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLA 373 (459)
T ss_pred ChHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHH
Confidence 467888888888888888888887765322110 11333344 333333 3445666666555543
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.7e-06 Score=85.26 Aligned_cols=71 Identities=14% Similarity=-0.000 Sum_probs=31.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCHHHHH-HHHHHHHccCChHHHHHHHHHHHhcCCcchhhHH
Q 007461 120 LKLLIRYLVQSKKWDSIVSLSEDFKIYNV-LPDAHTCS-RLVASCVRARKFKIANTLLQVFITDGEIALLAFN 190 (603)
Q Consensus 120 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~-~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 190 (603)
|..+...+...|+.+.+...+....+... .++..... .....+...|++++|.++++++....|.+..++.
T Consensus 9 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~ 81 (355)
T cd05804 9 HAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALK 81 (355)
T ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHH
Confidence 44444555555555555554444433321 11211111 1122234445666666666655555444443333
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.04 E-value=7.2e-06 Score=84.30 Aligned_cols=455 Identities=11% Similarity=-0.005 Sum_probs=223.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCc--chhhHHHHHhhh
Q 007461 119 TLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEI--ALLAFNSAMGGY 196 (603)
Q Consensus 119 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~ 196 (603)
.|..|.+.|....+...|.+.|+...+.+ ..+...+....+.|++..+++.|..+.-...+..+. -...|....-.|
T Consensus 494 af~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yy 572 (1238)
T KOG1127|consen 494 AFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYY 572 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccc
Confidence 45556666665556666666666665554 445556666666666666666666653333333332 222333344445
Q ss_pred hhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccHHHHHH--HHHHHhccCC
Q 007461 197 NKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKI--LCDSLGKSGR 274 (603)
Q Consensus 197 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~--li~~~~~~g~ 274 (603)
...++...|+.-|+...+..+. |...|..+..+|.++|++..|.++|.+...-++.. .|.. ..-..+..|.
T Consensus 573 Lea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s------~y~~fk~A~~ecd~Gk 645 (1238)
T KOG1127|consen 573 LEAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLS------KYGRFKEAVMECDNGK 645 (1238)
T ss_pred cCccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHh------HHHHHHHHHHHHHhhh
Confidence 5666666666666666554433 55566666666666666666666666655544332 2222 2223344566
Q ss_pred HHHHHHHHHHHHHC------CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH-------cCCCCCHHHHHHHHHHHHH
Q 007461 275 AFEALKFFRDMKEK------GILEDPSIYASLICSFASITEVKLAEELFKEAEE-------KGMLRDPEVCLKLVLMYIE 341 (603)
Q Consensus 275 ~~~A~~~~~~m~~~------g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~ 341 (603)
+.+|+..+...... +..--..++..+...+.-.|-...+..+++...+ .....+...|-.+.
T Consensus 646 Ykeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~as----- 720 (1238)
T KOG1127|consen 646 YKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVAS----- 720 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHh-----
Confidence 66666666555432 1111122222222222222322223333322221 11111111111111
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCH---H---HHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----
Q 007461 342 EGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRRGY---W---AAVKVYEQLISQGCIPGQVTYASIINAYCR---- 411 (603)
Q Consensus 342 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~---~---~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~---- 411 (603)
.|..+|-... .+ .|+.....++..-+-..+.. + -+.+.+-.-.+ ...+..+|..++..|.+
T Consensus 721 -----dac~~f~q~e-~~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hls--l~~~~~~WyNLGinylr~f~~ 791 (1238)
T KOG1127|consen 721 -----DACYIFSQEE-PS-IVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLS--LAIHMYPWYNLGINYLRYFLL 791 (1238)
T ss_pred -----HHHHHHHHhc-cc-chHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHH--HhhccchHHHHhHHHHHHHHH
Confidence 1122222222 11 12221111111111111111 1 01111111000 01122333333333222
Q ss_pred cC----ChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHH
Q 007461 412 IA----LYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQ 487 (603)
Q Consensus 412 ~g----~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 487 (603)
.| +...|...+...++.. ..+..+|+.|.-. ...|.+.-|...|-+-... -+.+..+|..+...+.+..+++.
T Consensus 792 l~et~~~~~~Ai~c~KkaV~L~-ann~~~WnaLGVl-sg~gnva~aQHCfIks~~s-ep~~~~~W~NlgvL~l~n~d~E~ 868 (1238)
T KOG1127|consen 792 LGETMKDACTAIRCCKKAVSLC-ANNEGLWNALGVL-SGIGNVACAQHCFIKSRFS-EPTCHCQWLNLGVLVLENQDFEH 868 (1238)
T ss_pred cCCcchhHHHHHHHHHHHHHHh-hccHHHHHHHHHh-hccchhhhhhhhhhhhhhc-cccchhheeccceeEEecccHHH
Confidence 11 2235666666666543 3345566665544 5567777777666555443 24467788888888888999999
Q ss_pred HHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHH--H--HCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 007461 488 VEKLWKEMERRKVTPD-KVSYTTVISAYNRAREFDMCVKFYNEF--R--MNGGVIDRAIAGIMVGVFSKLSQIEELVKLL 562 (603)
Q Consensus 488 a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~--~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 562 (603)
|...|...+.. .|+ ...|......-...|+.-+...+|..- . ..|-.++..-|-.....-..+|+.++-+...
T Consensus 869 A~~af~~~qSL--dP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~ 946 (1238)
T KOG1127|consen 869 AEPAFSSVQSL--DPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTA 946 (1238)
T ss_pred hhHHHHhhhhc--CchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHh
Confidence 99999988854 443 344555444455667777777777652 2 1223344444444444445667666554444
Q ss_pred HHHHh---------CCCCCCHHHHHHHHHHHHhcCcHHHHHHHHhhc
Q 007461 563 QDMKS---------EGTKLDERLYHSAMNALRDAGLQMQAQWLQQNF 600 (603)
Q Consensus 563 ~~m~~---------~g~~~~~~~~~~ll~a~~~~g~~~~a~~~~~~~ 600 (603)
+++.. .|.+-+...|.......-+.+.+++|.++..+.
T Consensus 947 ~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~Rl 993 (1238)
T KOG1127|consen 947 RKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRL 993 (1238)
T ss_pred hhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 33322 144455667777777777888888877776553
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.02 E-value=4.1e-06 Score=80.48 Aligned_cols=399 Identities=13% Similarity=0.049 Sum_probs=219.7
Q ss_pred HHhcCCCChHHHHHHHHHHhhCCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCh
Q 007461 89 GMLKDPQTQELAYDYYNEAKKLPEFRPEKSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKF 168 (603)
Q Consensus 89 ~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 168 (603)
+.+..+++.. |..+|..++..+ ++|...|..-..+|++.|++++|++=-.+-++.. +.-...|+....++.-.|++
T Consensus 11 aa~s~~d~~~-ai~~~t~ai~l~--p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~-p~w~kgy~r~Gaa~~~lg~~ 86 (539)
T KOG0548|consen 11 AAFSSGDFET-AIRLFTEAIMLS--PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLN-PDWAKGYSRKGAALFGLGDY 86 (539)
T ss_pred hhcccccHHH-HHHHHHHHHccC--CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcC-CchhhHHHHhHHHHHhcccH
Confidence 4556677766 999999888764 5677788889999999999999888777776664 44467888888888888999
Q ss_pred HHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHH-----HHHHHcCCHHHHHHH
Q 007461 169 KIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIM-----EAYYKIGDSEKVAAL 243 (603)
Q Consensus 169 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll-----~~~~~~g~~~~a~~~ 243 (603)
++|+..|.+-++..+.+...++.+..++.-. . ++-+.|. ++..|..+. +.+...-.+...++.
T Consensus 87 ~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~--~-~~~~~~~---------~p~~~~~l~~~p~t~~~~~~~~~~~~l~~ 154 (539)
T KOG0548|consen 87 EEAILAYSEGLEKDPSNKQLKTGLAQAYLED--Y-AADQLFT---------KPYFHEKLANLPLTNYSLSDPAYVKILEI 154 (539)
T ss_pred HHHHHHHHHHhhcCCchHHHHHhHHHhhhHH--H-Hhhhhcc---------CcHHHHHhhcChhhhhhhccHHHHHHHHH
Confidence 9999999998888888888888888887111 1 1111111 122222111 111111111111111
Q ss_pred HHHHHhCCCCCCCccHHHHHHHHHHHhccCCHHHHHHHHHH-----HHHC-------CCCC-------------------
Q 007461 244 FLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRD-----MKEK-------GILE------------------- 292 (603)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~-----m~~~-------g~~p------------------- 292 (603)
+. +++.. +..|....+...+.-.+.. +... +..|
T Consensus 155 ~~----~~p~~-----------l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~ 219 (539)
T KOG0548|consen 155 IQ----KNPTS-----------LKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERR 219 (539)
T ss_pred hh----cCcHh-----------hhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHH
Confidence 11 11100 0001110001111100000 0000 0011
Q ss_pred ---CHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHH
Q 007461 293 ---DPSIYASLICSFASITEVKLAEELFKEAEEKGMLRDPEVCLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCISCA 369 (603)
Q Consensus 293 ---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 369 (603)
-..-...+.++..+..+++.+.+-+....+.. .+..-++....+|...|.+.+....-+...+.|-. ...-|+.
T Consensus 220 ~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~kl 296 (539)
T KOG0548|consen 220 VKEKAHKEKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKL 296 (539)
T ss_pred HHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHH
Confidence 01124456666666777777887777777765 46666667777788888777776666655554432 1112222
Q ss_pred -------HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHH
Q 007461 370 -------IVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVA 442 (603)
Q Consensus 370 -------li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 442 (603)
+..+|.+.++++.++..|.+.......|+.. .+....+++....+...-.+... ..-...-..
T Consensus 297 Iak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~l---------s~lk~~Ek~~k~~e~~a~~~pe~-A~e~r~kGn 366 (539)
T KOG0548|consen 297 IAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDLL---------SKLKEAEKALKEAERKAYINPEK-AEEEREKGN 366 (539)
T ss_pred HHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHH---------HHHHHHHHHHHHHHHHHhhChhH-HHHHHHHHH
Confidence 2335555677777887777755544333322 12222333333333322222111 111111244
Q ss_pred HHHccCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHH
Q 007461 443 MYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDK-VSYTTVISAYNRAREFD 521 (603)
Q Consensus 443 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~-~~~~~li~~~~~~g~~~ 521 (603)
.+.+.|++..|...+.++++.. +-|...|....-+|.+.|.+..|++-.+..++. .|+. ..|..=..++....+++
T Consensus 367 e~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL--~p~~~kgy~RKg~al~~mk~yd 443 (539)
T KOG0548|consen 367 EAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIEL--DPNFIKAYLRKGAALRAMKEYD 443 (539)
T ss_pred HHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHHHHH
Confidence 5566677777777777776653 446666777777777777777777766666543 3333 23433344444455677
Q ss_pred HHHHHHHHHHHCC
Q 007461 522 MCVKFYNEFRMNG 534 (603)
Q Consensus 522 ~a~~~~~~~~~~~ 534 (603)
.|.+.|++.++.+
T Consensus 444 kAleay~eale~d 456 (539)
T KOG0548|consen 444 KALEAYQEALELD 456 (539)
T ss_pred HHHHHHHHHHhcC
Confidence 7777777766653
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.99 E-value=8.2e-06 Score=78.47 Aligned_cols=401 Identities=12% Similarity=0.006 Sum_probs=232.4
Q ss_pred hhchhHHHHHHhcCCCChHHHHHHHHHHhhCCCCCCC-HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 007461 80 AKKFDSFLHGMLKDPQTQELAYDYYNEAKKLPEFRPE-KSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRL 158 (603)
Q Consensus 80 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 158 (603)
...|..-..+++..+++.+ |++=-.+-.+ +.|+ +.-|+....++.-.|++++|+.-|.+-.+.. +.+...++.+
T Consensus 36 hvlySnrsaa~a~~~~~~~-al~da~k~~~---l~p~w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d-~~n~~L~~gl 110 (539)
T KOG0548|consen 36 HVLYSNRSAAYASLGSYEK-ALKDATKTRR---LNPDWAKGYSRKGAALFGLGDYEEAILAYSEGLEKD-PSNKQLKTGL 110 (539)
T ss_pred cchhcchHHHHHHHhhHHH-HHHHHHHHHh---cCCchhhHHHHhHHHHHhcccHHHHHHHHHHHhhcC-CchHHHHHhH
Confidence 4457777888888888877 5544444433 3444 6789999999999999999999999988775 5567777888
Q ss_pred HHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCc-HHHHHH-HHHHHHhCCCCCChhh---HHHHHHHHHH
Q 007461 159 VASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHM-YYSTIL-VYEKMKSAGIVLDSGC---YCQIMEAYYK 233 (603)
Q Consensus 159 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~-~~~~m~~~~~~p~~~~---~~~ll~~~~~ 233 (603)
..++... .. +.+.| .++..|..+..--..... .+.+.. +++.+.+ +.. +... ...++.+...
T Consensus 111 ~~a~~~~--~~-~~~~~--------~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~-~p~-~l~~~l~d~r~m~a~~~ 177 (539)
T KOG0548|consen 111 AQAYLED--YA-ADQLF--------TKPYFHEKLANLPLTNYSLSDPAYVKILEIIQK-NPT-SLKLYLNDPRLMKADGQ 177 (539)
T ss_pred HHhhhHH--HH-hhhhc--------cCcHHHHHhhcChhhhhhhccHHHHHHHHHhhc-CcH-hhhcccccHHHHHHHHH
Confidence 8777211 11 11111 122222222211111100 001111 1111111 000 0000 0111111111
Q ss_pred cCCHHHH-HHHHHHHH----------hCCCCCCCcc----------HHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCC
Q 007461 234 IGDSEKV-AALFLECK----------SRKLDSTPFS----------THMYKILCDSLGKSGRAFEALKFFRDMKEKGILE 292 (603)
Q Consensus 234 ~g~~~~a-~~~~~~~~----------~~~~~~~~~~----------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 292 (603)
....+.- ...-..+. .....+...+ ..-.-.+.....+..+++.|++-+....+.. -
T Consensus 178 l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~--~ 255 (539)
T KOG0548|consen 178 LKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKALELA--T 255 (539)
T ss_pred HhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh--h
Confidence 1000000 00000000 0000000000 1235567788888889999999999888764 3
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHH-------HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHh
Q 007461 293 DPSIYASLICSFASITEVKLAEELFKEAEEKGMLRDPE-------VCLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDC 365 (603)
Q Consensus 293 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 365 (603)
+..-++..-.++...|...+....-....+.|-. ... .+..+..+|.+.++++.+...|.+.......|+.
T Consensus 256 ~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~- 333 (539)
T KOG0548|consen 256 DITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDL- 333 (539)
T ss_pred hhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHH-
Confidence 4445566666788888888877777777666532 111 2222444677788999999999987665554432
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHH
Q 007461 366 ISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQV-TYASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMY 444 (603)
Q Consensus 366 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 444 (603)
..+....++++.......-.+ |... -.-.-.+.+.+.|++..|...|.++++.. +.|...|....-+|
T Consensus 334 --------ls~lk~~Ek~~k~~e~~a~~~--pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAac~ 402 (539)
T KOG0548|consen 334 --------LSKLKEAEKALKEAERKAYIN--PEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAACY 402 (539)
T ss_pred --------HHHHHHHHHHHHHHHHHHhhC--hhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHHHHH
Confidence 233344555555555544332 3321 11222566788999999999999999987 77899999999999
Q ss_pred HccCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 007461 445 GKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNR 516 (603)
Q Consensus 445 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 516 (603)
.+.|.+..|++=.+...+.. ++....|..=..++.-..+++.|.+.|.+.++. .|+..-+.--+.-|..
T Consensus 403 ~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ydkAleay~eale~--dp~~~e~~~~~~rc~~ 471 (539)
T KOG0548|consen 403 LKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEYDKALEAYQEALEL--DPSNAEAIDGYRRCVE 471 (539)
T ss_pred HHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CchhHHHHHHHHHHHH
Confidence 99999999999888887751 333445555555666677899999999998865 4655444444443433
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.2e-05 Score=80.85 Aligned_cols=405 Identities=15% Similarity=0.180 Sum_probs=234.9
Q ss_pred CHHhHHHHHH--HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCC---------c
Q 007461 116 EKSTLKLLIR--YLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGE---------I 184 (603)
Q Consensus 116 ~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---------~ 184 (603)
|..|-..+++ .|.--|+.+.|.+-.+.++ +...|..+.+.|.+.++++-|.-.+..|..... .
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~ 798 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQN 798 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhC
Confidence 5566666665 3556788998887777653 456889999999999888877766665543221 0
Q ss_pred chhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccHHHHHH
Q 007461 185 ALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKI 264 (603)
Q Consensus 185 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 264 (603)
+...-..+.......|..++|+.++++-++ |..|=+.|-..|.+++|.++-+.-...... .+|..
T Consensus 799 ~~e~eakvAvLAieLgMlEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr------~Tyy~ 863 (1416)
T KOG3617|consen 799 GEEDEAKVAVLAIELGMLEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIAETKDRIHLR------NTYYN 863 (1416)
T ss_pred CcchhhHHHHHHHHHhhHHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHHhhccceehh------hhHHH
Confidence 112222333344567889999999988765 344556777889999998887643332222 36777
Q ss_pred HHHHHhccCCHHHHHHHHHHHH----------HCC---------CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCC
Q 007461 265 LCDSLGKSGRAFEALKFFRDMK----------EKG---------ILEDPSIYASLICSFASITEVKLAEELFKEAEEKGM 325 (603)
Q Consensus 265 li~~~~~~g~~~~A~~~~~~m~----------~~g---------~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 325 (603)
-...+-..++.+.|++.|++-. ... -.-|...|......+...|+.+.|..++..+.+
T Consensus 864 yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D--- 940 (1416)
T KOG3617|consen 864 YAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD--- 940 (1416)
T ss_pred HHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---
Confidence 7777778888888888876532 110 012333344444444456666666666655443
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 007461 326 LRDPEVCLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASI 405 (603)
Q Consensus 326 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 405 (603)
|-.+++..|-.|+.++|-++-++-. |......+.+.|-..|++.+|+.+|.+.+. |...
T Consensus 941 ------~fs~VrI~C~qGk~~kAa~iA~esg------d~AAcYhlaR~YEn~g~v~~Av~FfTrAqa---------fsnA 999 (1416)
T KOG3617|consen 941 ------YFSMVRIKCIQGKTDKAARIAEESG------DKAACYHLARMYENDGDVVKAVKFFTRAQA---------FSNA 999 (1416)
T ss_pred ------hhhheeeEeeccCchHHHHHHHhcc------cHHHHHHHHHHhhhhHHHHHHHHHHHHHHH---------HHHH
Confidence 4455666666777777776655432 333566677778888888888888776543 3333
Q ss_pred HHHHHhcC---------------ChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCCHHHHHHHHHH--------HHH
Q 007461 406 INAYCRIA---------------LYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAK--------MKA 462 (603)
Q Consensus 406 l~~~~~~g---------------~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~--------m~~ 462 (603)
|..|-..+ +.-.|-++|++. | .-+...+..|-+.|.+.+|+++-=+ ++.
T Consensus 1000 IRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~---g-----~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa 1071 (1416)
T KOG3617|consen 1000 IRLCKENDMKDRLANLALMSGGSDLVSAARYYEEL---G-----GYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIA 1071 (1416)
T ss_pred HHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHc---c-----hhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHH
Confidence 33332222 122222333321 2 1122334457777777777665211 111
Q ss_pred cCC--CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCCCH
Q 007461 463 KGC--EPNVWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNRAREFDMCVKFYNEFRM-NGGVIDR 539 (603)
Q Consensus 463 ~~~--~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-~~~~~~~ 539 (603)
..+ ..|+...+...+-++.+.++++|..++-...+ |...+..|.. .+..--.++-+.|.- ++-.|+.
T Consensus 1072 ~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~---------~~~AlqlC~~-~nv~vtee~aE~mTp~Kd~~~~e 1141 (1416)
T KOG3617|consen 1072 KDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLARE---------FSGALQLCKN-RNVRVTEEFAELMTPTKDDMPNE 1141 (1416)
T ss_pred HhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHH---------HHHHHHHHhc-CCCchhHHHHHhcCcCcCCCccH
Confidence 112 23566667777777777778887777665542 2233333333 333333344444421 1122333
Q ss_pred ----HHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcHHH
Q 007461 540 ----AIAGIMVGVFSKLSQIEELVKLLQDMKSEGTKLDERLYHSAMNALRDAGLQMQ 592 (603)
Q Consensus 540 ----~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~a~~~~g~~~~ 592 (603)
.....+.+.|.++|.+..|.+-|-+.-+ + ...++++.++|+.++
T Consensus 1142 ~~R~~vLeqvae~c~qQG~Yh~AtKKfTQAGd---K------l~AMraLLKSGdt~K 1189 (1416)
T KOG3617|consen 1142 QERKQVLEQVAELCLQQGAYHAATKKFTQAGD---K------LSAMRALLKSGDTQK 1189 (1416)
T ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHhhhhh---H------HHHHHHHHhcCCcce
Confidence 2566778888899998888776655422 1 233566677777654
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.5e-06 Score=85.94 Aligned_cols=169 Identities=12% Similarity=0.178 Sum_probs=89.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh
Q 007461 336 VLMYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIALY 415 (603)
Q Consensus 336 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~ 415 (603)
+.+.....+|.+|+.+++.+++..... .-|..+...|...|+++.|.++|.+.- .++-.|..|.+.|++
T Consensus 739 ieaai~akew~kai~ildniqdqk~~s--~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw 807 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQKTAS--GYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKW 807 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhcccc--ccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccH
Confidence 344455566666666666666654421 235556666667777777766665421 244556666777777
Q ss_pred HHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007461 416 SKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEM 495 (603)
Q Consensus 416 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 495 (603)
+.|.++-.+.. |.......|-.-..-+-+.|++.+|.+++-.+. .|+. .|..|-++|..+..+++..+-
T Consensus 808 ~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~~-----aiqmydk~~~~ddmirlv~k~ 876 (1636)
T KOG3616|consen 808 EDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPDK-----AIQMYDKHGLDDDMIRLVEKH 876 (1636)
T ss_pred HHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----CchH-----HHHHHHhhCcchHHHHHHHHh
Confidence 76666655443 223344555555555555666666666554332 2332 245556666666555555443
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 007461 496 ERRKVTPDKVSYTTVISAYNRAREFDMCVKFYNE 529 (603)
Q Consensus 496 ~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 529 (603)
-... -..|...+..-|...|++..|.+-|-+
T Consensus 877 h~d~---l~dt~~~f~~e~e~~g~lkaae~~fle 907 (1636)
T KOG3616|consen 877 HGDH---LHDTHKHFAKELEAEGDLKAAEEHFLE 907 (1636)
T ss_pred Chhh---hhHHHHHHHHHHHhccChhHHHHHHHh
Confidence 2110 112334444445555555555555443
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.94 E-value=2.9e-05 Score=77.29 Aligned_cols=432 Identities=16% Similarity=0.167 Sum_probs=245.1
Q ss_pred cCCCChHHHHHHHHHHhhCCCCCCCHH-hHHHHHHHHHhcCCHHHHHHHHHHHH--------------------hCCCC-
Q 007461 92 KDPQTQELAYDYYNEAKKLPEFRPEKS-TLKLLIRYLVQSKKWDSIVSLSEDFK--------------------IYNVL- 149 (603)
Q Consensus 92 ~~~~~~~~a~~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~--------------------~~~~~- 149 (603)
..+++.. |..+++.... .|+.. .|-.+.......|+.--|.+.|..+- +.|..
T Consensus 456 d~~df~r-a~afles~~~----~~da~amw~~laelale~~nl~iaercfaai~dvak~r~lhd~~eiadeas~~~ggdg 530 (1636)
T KOG3616|consen 456 DDGDFDR-ATAFLESLEM----GPDAEAMWIRLAELALEAGNLFIAERCFAAIGDVAKARFLHDILEIADEASIEIGGDG 530 (1636)
T ss_pred ccCchHH-HHHHHHhhcc----CccHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhCCCC
Confidence 4455544 7777776542 45554 46666666666666555555444321 11111
Q ss_pred CCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 007461 150 PDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIME 229 (603)
Q Consensus 150 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 229 (603)
.+-+-...++..+. .++.+|..+|-+- ..-...+..|....++++++.+-+. .|.+.-...-.+.+.
T Consensus 531 t~fykvra~lail~--kkfk~ae~ifleq--------n~te~aigmy~~lhkwde~i~lae~---~~~p~~eklk~sy~q 597 (1636)
T KOG3616|consen 531 TDFYKVRAMLAILE--KKFKEAEMIFLEQ--------NATEEAIGMYQELHKWDEAIALAEA---KGHPALEKLKRSYLQ 597 (1636)
T ss_pred chHHHHHHHHHHHH--hhhhHHHHHHHhc--------ccHHHHHHHHHHHHhHHHHHHHHHh---cCChHHHHHHHHHHH
Confidence 11122222222222 2444555444321 1123345556666666766665432 222211222334555
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc--
Q 007461 230 AYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEKGILEDPSIYASLICSFASI-- 307 (603)
Q Consensus 230 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~-- 307 (603)
++...|+-++|-++-. .+.. --+.|+.|.+.|.+..|.+....=.. +..|......+..++.+.
T Consensus 598 ~l~dt~qd~ka~elk~----sdgd--------~laaiqlyika~~p~~a~~~a~n~~~--l~~de~il~~ia~alik~el 663 (1636)
T KOG3616|consen 598 ALMDTGQDEKAAELKE----SDGD--------GLAAIQLYIKAGKPAKAARAALNDEE--LLADEEILEHIAAALIKGEL 663 (1636)
T ss_pred HHHhcCchhhhhhhcc----ccCc--------cHHHHHHHHHcCCchHHHHhhcCHHH--hhccHHHHHHHHHHHHhhHH
Confidence 5666676666655421 1111 12346777777777766654321111 122333333333333332
Q ss_pred -----------CCHHHHHHHHHHHHHc---------CCCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhh
Q 007461 308 -----------TEVKLAEELFKEAEEK---------GMLRDPEV-CLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCI 366 (603)
Q Consensus 308 -----------g~~~~a~~~~~~~~~~---------~~~~~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 366 (603)
.++++|.+.|++-... .++..+.. -......+...|+++.|...|-+...
T Consensus 664 ydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~~--------- 734 (1636)
T KOG3616|consen 664 YDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANC--------- 734 (1636)
T ss_pred HHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhh---------
Confidence 3333444333321110 01111111 11223334455666666555543321
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHc
Q 007461 367 SCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGK 446 (603)
Q Consensus 367 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 446 (603)
.-.-+.+-.....+.+|+.+++.++... .-..-|..+.+.|+..|+++.|+++|.+. ..++-.|.+|.+
T Consensus 735 ~~kaieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k 803 (1636)
T KOG3616|consen 735 LIKAIEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGK 803 (1636)
T ss_pred HHHHHHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhc
Confidence 1233455667788999999999888764 23345778888999999999999998653 345667889999
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 007461 447 TGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNRAREFDMCVKF 526 (603)
Q Consensus 447 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~ 526 (603)
.|+++.|.++-++... -......|-+-..-+-.+|++.+|+++|-.+. .|+ ..|..|-+.|..+..+++
T Consensus 804 ~~kw~da~kla~e~~~--~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~-----~aiqmydk~~~~ddmirl 872 (1636)
T KOG3616|consen 804 AGKWEDAFKLAEECHG--PEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPD-----KAIQMYDKHGLDDDMIRL 872 (1636)
T ss_pred cccHHHHHHHHHHhcC--chhHHHHHHHhHHhHHhhcchhhhhheeEEcc----Cch-----HHHHHHHhhCcchHHHHH
Confidence 9999999998877653 23445556666666788999999998876653 355 347789999999999988
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHh
Q 007461 527 YNEFRMNGGVIDRAIAGIMVGVFSKLSQIEELVKLLQDMKSEGTKLDERLYHSAMNALRDAGLQMQAQWLQQ 598 (603)
Q Consensus 527 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~a~~~~g~~~~a~~~~~ 598 (603)
.++-... .-..+-..+..-|...|+.+.|..-|-+.- -|.+.++.|..++.|++|.++.+
T Consensus 873 v~k~h~d---~l~dt~~~f~~e~e~~g~lkaae~~flea~---------d~kaavnmyk~s~lw~dayriak 932 (1636)
T KOG3616|consen 873 VEKHHGD---HLHDTHKHFAKELEAEGDLKAAEEHFLEAG---------DFKAAVNMYKASELWEDAYRIAK 932 (1636)
T ss_pred HHHhChh---hhhHHHHHHHHHHHhccChhHHHHHHHhhh---------hHHHHHHHhhhhhhHHHHHHHHh
Confidence 8764321 122355567777888899998888765542 37777888888888888887765
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.2e-05 Score=89.88 Aligned_cols=338 Identities=8% Similarity=-0.035 Sum_probs=177.4
Q ss_pred hhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC----C-CccHHHHHHHHHHHh
Q 007461 196 YNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDS----T-PFSTHMYKILCDSLG 270 (603)
Q Consensus 196 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~----~-~~~~~~~~~li~~~~ 270 (603)
....|++..+..+++.+.......+..........+...|+++++..++......-... . .........+...+.
T Consensus 384 l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 463 (903)
T PRK04841 384 LFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAI 463 (903)
T ss_pred HHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHH
Confidence 33445555555555544221111122233344455566778888877777654321110 0 001122223334456
Q ss_pred ccCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHccCCHHHHHHHHHHHHHcCCC---C--CHHHHHHHHHHHHH
Q 007461 271 KSGRAFEALKFFRDMKEKGILEDP----SIYASLICSFASITEVKLAEELFKEAEEKGML---R--DPEVCLKLVLMYIE 341 (603)
Q Consensus 271 ~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~---~--~~~~~~~l~~~~~~ 341 (603)
..|++++|...+++....-...+. ...+.+...+...|++++|...+.+....... + .......+...+..
T Consensus 464 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~ 543 (903)
T PRK04841 464 NDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFA 543 (903)
T ss_pred hCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH
Confidence 678888888888776653111121 22344444556678888887777776643111 1 12334455666777
Q ss_pred cCCHHHHHHHHHHHHhC----CCC--C-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCCC--HHHHHHHHHHHH
Q 007461 342 EGLVEKTLDVVESMKNA----KLK--I-SDCISCAIVNGFSKRRGYWAAVKVYEQLISQG--CIPG--QVTYASIINAYC 410 (603)
Q Consensus 342 ~g~~~~a~~~~~~~~~~----~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g--~~p~--~~~~~~ll~~~~ 410 (603)
.|++++|...+++..+. +.. + ....+..+...+...|++++|...+++..... ..+. ...+..+.....
T Consensus 544 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~ 623 (903)
T PRK04841 544 QGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISL 623 (903)
T ss_pred CCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHH
Confidence 88888887777665431 111 1 12233444555666788888877777654421 1111 223334445566
Q ss_pred hcCChHHHHHHHHHHHHcCCC-cCHhhH-----HHHHHHHHccCCHHHHHHHHHHHHHcCCCCC---HhHHHHHHHHHHh
Q 007461 411 RIALYSKAEKVFIEMQQKGFD-KCVVAY-----SSMVAMYGKTGRIRDAMWLVAKMKAKGCEPN---VWIYNSLMDMHGR 481 (603)
Q Consensus 411 ~~g~~~~a~~~~~~~~~~~~~-~~~~~~-----~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~~~~~li~~~~~ 481 (603)
..|+.++|...+......... .....+ ...+..+...|+.+.|...+........... ...+..+..++..
T Consensus 624 ~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~ 703 (903)
T PRK04841 624 ARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQIL 703 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHH
Confidence 778888887777776442100 000001 1112334456777777777666543211111 1113345556777
Q ss_pred cCCHHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 007461 482 AKNLRQVEKLWKEMERR----KVTPD-KVSYTTVISAYNRAREFDMCVKFYNEFRMN 533 (603)
Q Consensus 482 ~g~~~~a~~~~~~m~~~----~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 533 (603)
.|+.++|...+++.... |..++ ..+...+..++...|+.++|...+.+..+.
T Consensus 704 ~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 704 LGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred cCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 78888887777776432 22222 134555666777778888888888777654
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.91 E-value=1e-06 Score=77.95 Aligned_cols=289 Identities=11% Similarity=0.063 Sum_probs=133.3
Q ss_pred HHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccHHHHH-HHHHHH
Q 007461 191 SAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYK-ILCDSL 269 (603)
Q Consensus 191 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~-~li~~~ 269 (603)
+++..+.+..++..|++++..-.++..+ +....+.|..+|.+..++..|...++++....+.... |. --...+
T Consensus 15 aviy~lI~d~ry~DaI~~l~s~~Er~p~-~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~q-----YrlY~AQSL 88 (459)
T KOG4340|consen 15 AVVYRLIRDARYADAIQLLGSELERSPR-SRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQ-----YRLYQAQSL 88 (459)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHH-----HHHHHHHHH
Confidence 3333344444455555544444433211 3334444445555555555555555554433322111 11 123444
Q ss_pred hccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH--HHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH
Q 007461 270 GKSGRAFEALKFFRDMKEKGILEDPSIYASLICS--FASITEVKLAEELFKEAEEKGMLRDPEVCLKLVLMYIEEGLVEK 347 (603)
Q Consensus 270 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~--~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 347 (603)
.+.+.+.+|+++...|.+. |+...-..-+.+ ....+++..++.++++....| +..+.+...-...+.|+++.
T Consensus 89 Y~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEa 162 (459)
T KOG4340|consen 89 YKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEA 162 (459)
T ss_pred HHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHH
Confidence 5555566666665555431 111111111111 123455555555555443211 33344444444456666666
Q ss_pred HHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-------------CHH--------------
Q 007461 348 TLDVVESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLISQGCIP-------------GQV-------------- 400 (603)
Q Consensus 348 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-------------~~~-------------- 400 (603)
|.+-|....+-+--.....|+.-+ +..+.++++.|++...++++.|++- |..
T Consensus 163 AvqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~ 241 (459)
T KOG4340|consen 163 AVQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALV 241 (459)
T ss_pred HHHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHH
Confidence 666666555433222223444333 3344566666666666666555331 111
Q ss_pred -HHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCcCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHH
Q 007461 401 -TYASIINAYCRIALYSKAEKVFIEMQQK-GFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDM 478 (603)
Q Consensus 401 -~~~~ll~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 478 (603)
.+|.-...+.+.|+.+.|.+.+-.|.-. .-..|++|...+.-.- -.+++.+..+-+.-+.+.+ +-...||..++-.
T Consensus 242 eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~n-PfP~ETFANlLll 319 (459)
T KOG4340|consen 242 EAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQN-PFPPETFANLLLL 319 (459)
T ss_pred HHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcC-CCChHHHHHHHHH
Confidence 1122222344566667676666666422 2234555555443222 1344444444444444432 2244566667777
Q ss_pred HHhcCCHHHHHHHHHH
Q 007461 479 HGRAKNLRQVEKLWKE 494 (603)
Q Consensus 479 ~~~~g~~~~a~~~~~~ 494 (603)
||++.-++.|..++.+
T Consensus 320 yCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 320 YCKNEYFDLAADVLAE 335 (459)
T ss_pred HhhhHHHhHHHHHHhh
Confidence 7777777777666655
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.90 E-value=0.00015 Score=74.98 Aligned_cols=77 Identities=6% Similarity=0.093 Sum_probs=41.6
Q ss_pred HHHHHHHhCCCC--CChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccCCHHHHHHHHHH
Q 007461 207 LVYEKMKSAGIV--LDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRD 284 (603)
Q Consensus 207 ~~~~~m~~~~~~--p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 284 (603)
++.+..++.+++ .|+.-.+..++++...+-..+..++++++.-.+..... +...-|.|+-.-.+.. ..+..+..++
T Consensus 968 qLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse-~~nLQnLLiLtAikad-~trVm~YI~r 1045 (1666)
T KOG0985|consen 968 QLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSE-NRNLQNLLILTAIKAD-RTRVMEYINR 1045 (1666)
T ss_pred HHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCccccc-chhhhhhHHHHHhhcC-hHHHHHHHHH
Confidence 456666654432 35556667777888888888888888877654432221 2233444444333332 2334444444
Q ss_pred H
Q 007461 285 M 285 (603)
Q Consensus 285 m 285 (603)
+
T Consensus 1046 L 1046 (1666)
T KOG0985|consen 1046 L 1046 (1666)
T ss_pred h
Confidence 4
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.90 E-value=3.5e-05 Score=77.69 Aligned_cols=303 Identities=14% Similarity=0.139 Sum_probs=193.1
Q ss_pred CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC---------CCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcc
Q 007461 115 PEKSTLKLLIRYLVQSKKWDSIVSLSEDFKIYN---------VLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIA 185 (603)
Q Consensus 115 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 185 (603)
.+...|..+...|.+.++++-|.-.+-.|.... -.|+ .+-..+.-.....|.+++|..++++..+
T Consensus 755 kS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR----- 828 (1416)
T KOG3617|consen 755 KSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLAIELGMLEEALILYRQCKR----- 828 (1416)
T ss_pred hhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHHHHHhhHHHHHHHHHHHHH-----
Confidence 366789999999999988887776666654221 1121 1111122223467899999999998876
Q ss_pred hhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHH----------hCCCCC-
Q 007461 186 LLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECK----------SRKLDS- 254 (603)
Q Consensus 186 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~----------~~~~~~- 254 (603)
|..|=+.|-..|++++|.++-+.--+..+. .||..-..-+-..+|.+.|++.|++.. ..++..
T Consensus 829 ---~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr---~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~ 902 (1416)
T KOG3617|consen 829 ---YDLLNKLYQSQGMWSEAFEIAETKDRIHLR---NTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQI 902 (1416)
T ss_pred ---HHHHHHHHHhcccHHHHHHHHhhccceehh---hhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHH
Confidence 445556777889999999987654333332 367777777777889999998887532 111110
Q ss_pred -----CCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCH
Q 007461 255 -----TPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEKGILEDPSIYASLICSFASITEVKLAEELFKEAEEKGMLRDP 329 (603)
Q Consensus 255 -----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 329 (603)
...+...|.--...+-..|+.+.|+.+|...++ |-++++..+-.|+.++|.++-++- -|.
T Consensus 903 e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~es------gd~ 967 (1416)
T KOG3617|consen 903 EQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEES------GDK 967 (1416)
T ss_pred HHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHhc------ccH
Confidence 001223455566667778889999988877654 567777778899999998887652 377
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcC---------------CHHHHHHHHHHHHHcC
Q 007461 330 EVCLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRR---------------GYWAAVKVYEQLISQG 394 (603)
Q Consensus 330 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~---------------~~~~a~~~~~~m~~~g 394 (603)
...-.|.+.|-..|++.+|...|.+... +..-|+.|-.++ +.-.|-++|++.-
T Consensus 968 AAcYhlaR~YEn~g~v~~Av~FfTrAqa---------fsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g--- 1035 (1416)
T KOG3617|consen 968 AACYHLARMYENDGDVVKAVKFFTRAQA---------FSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELG--- 1035 (1416)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHH---------HHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcc---
Confidence 7788899999999999999999987652 333333222221 2223334444321
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHH--------HHHc--CCCcCHhhHHHHHHHHHccCCHHHHHHHHHHHH
Q 007461 395 CIPGQVTYASIINAYCRIALYSKAEKVFIE--------MQQK--GFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMK 461 (603)
Q Consensus 395 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~--------~~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 461 (603)
.-+...+..|-+.|.+.+|+++-=+ ++.. ....|+...+.-.+-++...++++|..++-...
T Consensus 1036 -----~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar 1107 (1416)
T KOG3617|consen 1036 -----GYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAR 1107 (1416)
T ss_pred -----hhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 1123334456777877777665211 1122 223456666666677777777777777765544
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.8e-05 Score=81.42 Aligned_cols=375 Identities=10% Similarity=0.018 Sum_probs=202.2
Q ss_pred ChHHHHHHHHHHhhCCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHccCChHHHHH
Q 007461 96 TQELAYDYYNEAKKLPEFRPEKSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDA--HTCSRLVASCVRARKFKIANT 173 (603)
Q Consensus 96 ~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~ll~~~~~~~~~~~a~~ 173 (603)
...+|.+.|+.+.+.+ .-+...+.....-|++..+|+.|..+.-...+.. +.-. ..|..+.-.|.+.++...|..
T Consensus 507 Dm~RA~kCf~KAFeLD--atdaeaaaa~adtyae~~~we~a~~I~l~~~qka-~a~~~k~nW~~rG~yyLea~n~h~aV~ 583 (1238)
T KOG1127|consen 507 DMKRAKKCFDKAFELD--ATDAEAAAASADTYAEESTWEEAFEICLRAAQKA-PAFACKENWVQRGPYYLEAHNLHGAVC 583 (1238)
T ss_pred HHHHHHHHHHHHhcCC--chhhhhHHHHHHHhhccccHHHHHHHHHHHhhhc-hHHHHHhhhhhccccccCccchhhHHH
Confidence 4446999999998864 4567788899999999999999999844333221 1122 233344445778899999999
Q ss_pred HHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHH--HHHHHHHcCCHHHHHHHHHHHHhCC
Q 007461 174 LLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQ--IMEAYYKIGDSEKVAALFLECKSRK 251 (603)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~--ll~~~~~~g~~~~a~~~~~~~~~~~ 251 (603)
-|+...+.+|.|...|..++.+|.+.|++..|+++|.+.... .|+. +|.. ..-.-+..|.+.+|...+..+....
T Consensus 584 ~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP~s-~y~~fk~A~~ecd~GkYkeald~l~~ii~~~ 660 (1238)
T KOG1127|consen 584 EFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLL--RPLS-KYGRFKEAVMECDNGKYKEALDALGLIIYAF 660 (1238)
T ss_pred HHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--CcHh-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999988764 4433 3332 3334567899999999887765432
Q ss_pred CCCC---CccHHHHHHHHHHHhccCCHHHHHHHHHHHHH-------CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 007461 252 LDST---PFSTHMYKILCDSLGKSGRAFEALKFFRDMKE-------KGILEDPSIYASLICSFASITEVKLAEELFKEAE 321 (603)
Q Consensus 252 ~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-------~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 321 (603)
..-. .....++-.+...+...|-...|.+.+++-++ .....+...|..+-.+| .+|....
T Consensus 661 s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac----------~~f~q~e 730 (1238)
T KOG1127|consen 661 SLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDAC----------YIFSQEE 730 (1238)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHH----------HHHHHhc
Confidence 1100 00122333333334444444444444444332 11111222222222222 1222211
Q ss_pred HcCCCCCHHHHHHHHHHHHHcCCH---H---HHHHHHHHHHhCCCCCCHhhHHHHHHHHHh--------cCCHHHHHHHH
Q 007461 322 EKGMLRDPEVCLKLVLMYIEEGLV---E---KTLDVVESMKNAKLKISDCISCAIVNGFSK--------RRGYWAAVKVY 387 (603)
Q Consensus 322 ~~~~~~~~~~~~~l~~~~~~~g~~---~---~a~~~~~~~~~~~~~~~~~~~~~li~~~~~--------~~~~~~a~~~~ 387 (603)
.. .|+......|..-.-..+.. | -+.+.+-.-.. ...+..+|..+...|.+ ..+...|+..+
T Consensus 731 -~~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hls--l~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~ 806 (1238)
T KOG1127|consen 731 -PS-IVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLS--LAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCC 806 (1238)
T ss_pred -cc-chHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHH--HhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHH
Confidence 11 12222222222212222211 1 00111110000 01112234444433333 11223566666
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCC
Q 007461 388 EQLISQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEP 467 (603)
Q Consensus 388 ~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 467 (603)
.+.++.. .-+..+|+.+.- ....|++.-+...|-+-.... +.+..+|..+.-.+.+..+++.|...|...... .+.
T Consensus 807 KkaV~L~-ann~~~WnaLGV-lsg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSL-dP~ 882 (1238)
T KOG1127|consen 807 KKAVSLC-ANNEGLWNALGV-LSGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSL-DPL 882 (1238)
T ss_pred HHHHHHh-hccHHHHHHHHH-hhccchhhhhhhhhhhhhhcc-ccchhheeccceeEEecccHHHhhHHHHhhhhc-Cch
Confidence 6655432 233444444433 355566666666555544443 445566666666667777777777777666553 122
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHH
Q 007461 468 NVWIYNSLMDMHGRAKNLRQVEKLWKE 494 (603)
Q Consensus 468 ~~~~~~~li~~~~~~g~~~~a~~~~~~ 494 (603)
|...|-.........|+.-++..+|..
T Consensus 883 nl~~WlG~Ali~eavG~ii~~~~lfaH 909 (1238)
T KOG1127|consen 883 NLVQWLGEALIPEAVGRIIERLILFAH 909 (1238)
T ss_pred hhHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 344444433334445555555555544
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.3e-05 Score=89.62 Aligned_cols=297 Identities=10% Similarity=-0.021 Sum_probs=138.8
Q ss_pred HHHccCCHHHHHHHHHHHHHcCC------CCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH----hhHHHH
Q 007461 303 SFASITEVKLAEELFKEAEEKGM------LRD--PEVCLKLVLMYIEEGLVEKTLDVVESMKNAKLKISD----CISCAI 370 (603)
Q Consensus 303 ~~~~~g~~~~a~~~~~~~~~~~~------~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~l 370 (603)
.+...|+.+++..++..+.+.-- .+. ......+...+...|++++|...++...+.....+. ...+.+
T Consensus 418 ~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~l 497 (903)
T PRK04841 418 LAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVL 497 (903)
T ss_pred HHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHH
Confidence 33455666666666665543210 001 111122233445566777776666665542111111 123344
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCC---CCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCC--c-CHhhHH
Q 007461 371 VNGFSKRRGYWAAVKVYEQLISQGC---IPG--QVTYASIINAYCRIALYSKAEKVFIEMQQK----GFD--K-CVVAYS 438 (603)
Q Consensus 371 i~~~~~~~~~~~a~~~~~~m~~~g~---~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~--~-~~~~~~ 438 (603)
...+...|++++|...+++.....- .+. ..++..+...+...|++++|...+++.... +.. + ....+.
T Consensus 498 g~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 577 (903)
T PRK04841 498 GEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLR 577 (903)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHH
Confidence 4455566777777666666543210 011 123334444556667777776666654432 111 1 122233
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHc--CCCC--CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCCHH--H--HH
Q 007461 439 SMVAMYGKTGRIRDAMWLVAKMKAK--GCEP--NVWIYNSLMDMHGRAKNLRQVEKLWKEMERRK--VTPDKV--S--YT 508 (603)
Q Consensus 439 ~li~~~~~~g~~~~A~~~~~~m~~~--~~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~--~~p~~~--~--~~ 508 (603)
.+...+...|++++|...+++.... ...+ ....+..+...+...|+.++|...+.+..... ...... . ..
T Consensus 578 ~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~ 657 (903)
T PRK04841 578 IRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADK 657 (903)
T ss_pred HHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHH
Confidence 4444555567777776666665432 1111 12233334445556677777766666653211 000000 0 01
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHccCCHHHHHHHHHHHHhC----CCCCC-HHHHHHH
Q 007461 509 TVISAYNRAREFDMCVKFYNEFRMNGGVIDR---AIAGIMVGVFSKLSQIEELVKLLQDMKSE----GTKLD-ERLYHSA 580 (603)
Q Consensus 509 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----g~~~~-~~~~~~l 580 (603)
..+..+...|+.+.|..++............ ..+..+..++...|++++|...+++.... |...+ ..+...+
T Consensus 658 ~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~l 737 (903)
T PRK04841 658 VRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILL 737 (903)
T ss_pred HHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHH
Confidence 1123334456666666665554332111110 11234555566667777776666665542 22222 1234444
Q ss_pred HHHHHhcCcHHHHHHHHhh
Q 007461 581 MNALRDAGLQMQAQWLQQN 599 (603)
Q Consensus 581 l~a~~~~g~~~~a~~~~~~ 599 (603)
..++...|+.++|...+++
T Consensus 738 a~a~~~~G~~~~A~~~L~~ 756 (903)
T PRK04841 738 NQLYWQQGRKSEAQRVLLE 756 (903)
T ss_pred HHHHHHcCCHHHHHHHHHH
Confidence 4556666776666666554
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.85 E-value=0.00024 Score=73.58 Aligned_cols=476 Identities=12% Similarity=0.110 Sum_probs=249.2
Q ss_pred HHHHHhcCCCChHHHHHHHHHHhhCCCCCCCHH--hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 007461 86 FLHGMLKDPQTQELAYDYYNEAKKLPEFRPEKS--TLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCV 163 (603)
Q Consensus 86 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 163 (603)
-|..+|...+..+.|++.|..+...-.....+. .-..++ .+...-.++.+.+.++.|...++..+..+...+..-|.
T Consensus 611 ~IAqLCEKAGL~qraLehytDl~DIKR~vVhth~L~pEwLv-~yFg~lsve~s~eclkaml~~NirqNlQi~VQvatky~ 689 (1666)
T KOG0985|consen 611 EIAQLCEKAGLLQRALEHYTDLYDIKRVVVHTHLLNPEWLV-NYFGSLSVEDSLECLKAMLSANIRQNLQIVVQVATKYH 689 (1666)
T ss_pred HHHHHHHhcchHHHHHHhcccHHHHHHHHHHhccCCHHHHH-HHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 355556555555568877765542110000010 011223 33444457777888888887777777777766666666
Q ss_pred ccCChHHHHHHHHHHHhcC------------CcchhhHHHHHhhhhhcCcHHHHHHHHHHH------------HhC----
Q 007461 164 RARKFKIANTLLQVFITDG------------EIALLAFNSAMGGYNKLHMYYSTILVYEKM------------KSA---- 215 (603)
Q Consensus 164 ~~~~~~~a~~~~~~~~~~~------------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m------------~~~---- 215 (603)
..=-.+..+++|+.+.... ..|+.+.-..|.+.++.|++.+...+.++- ++.
T Consensus 690 eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicresn~YdpErvKNfLkeAkL~D 769 (1666)
T KOG0985|consen 690 EQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLTD 769 (1666)
T ss_pred HHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhccccCCHHHHHHHHHhccccc
Confidence 6655566666766655432 136677777778888888777666544331 111
Q ss_pred -----------CCCCChhhHH------HHHHHHHHcCCHHHHHHHHHHHHh---------------CCCCCCCccHHHHH
Q 007461 216 -----------GIVLDSGCYC------QIMEAYYKIGDSEKVAALFLECKS---------------RKLDSTPFSTHMYK 263 (603)
Q Consensus 216 -----------~~~p~~~~~~------~ll~~~~~~g~~~~a~~~~~~~~~---------------~~~~~~~~~~~~~~ 263 (603)
|+.+|.+.|. ..|..|.+.=+..+.-.+...+.. +|..| -+
T Consensus 770 qlPLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQkvNps~~p~VvG~LLD~dC~E~~ik~Li~~v~gq~~-------~d 842 (1666)
T KOG0985|consen 770 QLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRTPQVVGALLDVDCSEDFIKNLILSVRGQFP-------VD 842 (1666)
T ss_pred cCceEEEecccccHHHHHHHHHHhhHHHHHHHHHhhcCCcccchhhhhhhcCCCcHHHHHHHHHHHhccCC-------hH
Confidence 1122222111 112222222111111111111110 11111 23
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC-HHHHHH---HHH-----H-HH-----------H
Q 007461 264 ILCDSLGKSGRAFEALKFFRDMKEKGILEDPSIYASLICSFASITE-VKLAEE---LFK-----E-AE-----------E 322 (603)
Q Consensus 264 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~-~~~a~~---~~~-----~-~~-----------~ 322 (603)
.|+.-.-+.++..--+..++.....|.+ |..+++++...|...++ .+.-.+ .++ + .. +
T Consensus 843 eLv~EvEkRNRLklLlp~LE~~i~eG~~-d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKRDP~lA~vaYe 921 (1666)
T KOG0985|consen 843 ELVEEVEKRNRLKLLLPWLESLIQEGSQ-DPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRDPHLACVAYE 921 (1666)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHhccCc-chHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhcccCCceEEEeec
Confidence 3444445555565566666666677655 77777777777765433 221110 000 0 00 1
Q ss_pred cCC--------CCCHHHHHHHHHHHHHcCCHHHH-----------HHHHHHHHhCCC--CCCHhhHHHHHHHHHhcCCHH
Q 007461 323 KGM--------LRDPEVCLKLVLMYIEEGLVEKT-----------LDVVESMKNAKL--KISDCISCAIVNGFSKRRGYW 381 (603)
Q Consensus 323 ~~~--------~~~~~~~~~l~~~~~~~g~~~~a-----------~~~~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~ 381 (603)
+|. -.....|....+.+.+..+.+-- +.+.++..+-.+ ..|..-.+..+.++...+-+.
T Consensus 922 rGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~ 1001 (1666)
T KOG0985|consen 922 RGQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPN 1001 (1666)
T ss_pred ccCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcH
Confidence 110 01112333344444444443322 234455444332 123344666777788888888
Q ss_pred HHHHHHHHHHHcCCC--CCHHHHHHHHH---------------------------HHHhcCChHHHHHHHHHHHHcCCCc
Q 007461 382 AAVKVYEQLISQGCI--PGQVTYASIIN---------------------------AYCRIALYSKAEKVFIEMQQKGFDK 432 (603)
Q Consensus 382 ~a~~~~~~m~~~g~~--p~~~~~~~ll~---------------------------~~~~~g~~~~a~~~~~~~~~~~~~~ 432 (603)
+.+++++++.-.... -+...-+.++- .+...+-+++|..+|+... .
T Consensus 1002 eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyDa~~ia~iai~~~LyEEAF~ifkkf~-----~ 1076 (1666)
T KOG0985|consen 1002 ELIELLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIAEIAIENQLYEEAFAIFKKFD-----M 1076 (1666)
T ss_pred HHHHHHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCCchhHHHHHhhhhHHHHHHHHHHHhc-----c
Confidence 888888877643211 11111111211 1223334444555544321 1
Q ss_pred CHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 007461 433 CVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDKVSYTTVIS 512 (603)
Q Consensus 433 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 512 (603)
+....+.||. ..+..+.|.++-++.. ....|+.+..+-.+.|...+|++-|-+.- |+..|.-++.
T Consensus 1077 n~~A~~VLie---~i~~ldRA~efAe~~n------~p~vWsqlakAQL~~~~v~dAieSyikad------Dps~y~eVi~ 1141 (1666)
T KOG0985|consen 1077 NVSAIQVLIE---NIGSLDRAYEFAERCN------EPAVWSQLAKAQLQGGLVKDAIESYIKAD------DPSNYLEVID 1141 (1666)
T ss_pred cHHHHHHHHH---HhhhHHHHHHHHHhhC------ChHHHHHHHHHHHhcCchHHHHHHHHhcC------CcHHHHHHHH
Confidence 2233333332 2244455554444432 45678888888888888888877665432 6677888888
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcHHH
Q 007461 513 AYNRAREFDMCVKFYNEFRMNGGVIDRAIAGIMVGVFSKLSQIEELVKLLQDMKSEGTKLDERLYHSAMNALRDAGLQMQ 592 (603)
Q Consensus 513 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~a~~~~g~~~~ 592 (603)
.+.+.|.|++-.+++...+++.-.|...+ .||-+|.+.++..+..+++ .-|+......+.+-|...|.++.
T Consensus 1142 ~a~~~~~~edLv~yL~MaRkk~~E~~id~--eLi~AyAkt~rl~elE~fi-------~gpN~A~i~~vGdrcf~~~~y~a 1212 (1666)
T KOG0985|consen 1142 VASRTGKYEDLVKYLLMARKKVREPYIDS--ELIFAYAKTNRLTELEEFI-------AGPNVANIQQVGDRCFEEKMYEA 1212 (1666)
T ss_pred HHHhcCcHHHHHHHHHHHHHhhcCccchH--HHHHHHHHhchHHHHHHHh-------cCCCchhHHHHhHHHhhhhhhHH
Confidence 88888999888888888777655555443 5777888888877665553 23666667777777777777777
Q ss_pred HHHHHhh
Q 007461 593 AQWLQQN 599 (603)
Q Consensus 593 a~~~~~~ 599 (603)
|.-++..
T Consensus 1213 Akl~y~~ 1219 (1666)
T KOG0985|consen 1213 AKLLYSN 1219 (1666)
T ss_pred HHHHHHH
Confidence 7666544
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.83 E-value=0.00014 Score=70.14 Aligned_cols=186 Identities=11% Similarity=0.121 Sum_probs=125.6
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh---cCChHHHHHHHHHHHHcC-CCcCHhhHHHHHHHHHccCCHHHHHH
Q 007461 380 YWAAVKVYEQLISQGCIPGQVTYASIINAYCR---IALYSKAEKVFIEMQQKG-FDKCVVAYSSMVAMYGKTGRIRDAMW 455 (603)
Q Consensus 380 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~---~g~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~ 455 (603)
.+++..+++.....-..-+..+|..+.+.--. .+..+....+++++.... ..| .-+|..+++.--+..-+..|..
T Consensus 309 t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~-tLv~~~~mn~irR~eGlkaaR~ 387 (656)
T KOG1914|consen 309 TDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDL-TLVYCQYMNFIRRAEGLKAARK 387 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCC-ceehhHHHHHHHHhhhHHHHHH
Confidence 34566666665543222333344333322111 112455566666665542 344 3567888888888888899999
Q ss_pred HHHHHHHcCCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 007461 456 LVAKMKAKGCEP-NVWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNRAREFDMCVKFYNEFRMNG 534 (603)
Q Consensus 456 ~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 534 (603)
+|.+..+.+..+ ++.++++++.-||. ++..-|.++|+-=.+. ..-+..-....+.-+.+.++-..+..+|++....+
T Consensus 388 iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~ 465 (656)
T KOG1914|consen 388 IFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSV 465 (656)
T ss_pred HHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhcc
Confidence 999998876666 77788888877765 5778889998875432 22233344666777778888888999999998886
Q ss_pred CCCCH--HHHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 007461 535 GVIDR--AIAGIMVGVFSKLSQIEELVKLLQDMKSE 568 (603)
Q Consensus 535 ~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 568 (603)
+.+|. .+|+.+++.=+.-|+.+.+.++-+++...
T Consensus 466 l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~a 501 (656)
T KOG1914|consen 466 LSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTA 501 (656)
T ss_pred CChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 66655 58999999888899999988888877653
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.78 E-value=9.5e-06 Score=76.81 Aligned_cols=189 Identities=7% Similarity=-0.003 Sum_probs=111.7
Q ss_pred HhcCCCChHHHHHHHHHHhhCCCCCCCHHhHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCh
Q 007461 90 MLKDPQTQELAYDYYNEAKKLPEFRPEKSTLKLLIRYLVQSK-KWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKF 168 (603)
Q Consensus 90 ~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 168 (603)
+...+... .|+.++..+++.. +-+..+|+.....+...| ++++++..++.+.+.+ +.+..+|+.....+.+.|+.
T Consensus 47 l~~~e~se-rAL~lt~~aI~ln--P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~~ 122 (320)
T PLN02789 47 YASDERSP-RALDLTADVIRLN--PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGPD 122 (320)
T ss_pred HHcCCCCH-HHHHHHHHHHHHC--chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCch
Confidence 33444444 4888888887652 223345666666666666 5677888887777665 44555666555555555542
Q ss_pred --HHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHc---CCH----HH
Q 007461 169 --KIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKI---GDS----EK 239 (603)
Q Consensus 169 --~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~---g~~----~~ 239 (603)
+++...++.+.+.++.+..+|+...-++...|+++++++.++++++.++. |...|+.....+.+. |.. ++
T Consensus 123 ~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~ 201 (320)
T PLN02789 123 AANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRDS 201 (320)
T ss_pred hhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccccHHH
Confidence 56677777777777777777777777777777777777777777776554 555666655555444 222 23
Q ss_pred HHHHHHHHHhCCCCCCCccHHHHHHHHHHHhcc----CCHHHHHHHHHHHHH
Q 007461 240 VAALFLECKSRKLDSTPFSTHMYKILCDSLGKS----GRAFEALKFFRDMKE 287 (603)
Q Consensus 240 a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~----g~~~~A~~~~~~m~~ 287 (603)
..+........++. |..+|+.+...+... ++..+|.+.+.+...
T Consensus 202 el~y~~~aI~~~P~----N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~ 249 (320)
T PLN02789 202 ELKYTIDAILANPR----NESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLS 249 (320)
T ss_pred HHHHHHHHHHhCCC----CcCHHHHHHHHHhcCCcccccchhHHHHHHHhhc
Confidence 44444444444332 223566665555542 223344444444433
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.78 E-value=0.00021 Score=69.05 Aligned_cols=152 Identities=12% Similarity=0.131 Sum_probs=120.2
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCc-CHhhHHHHHHHHHccCCHHHHHHHHH
Q 007461 380 YWAAVKVYEQLISQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQKGFDK-CVVAYSSMVAMYGKTGRIRDAMWLVA 458 (603)
Q Consensus 380 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~ 458 (603)
.+....+++++...-..--..+|...|+...+..-+..|..+|.+..+.+..+ ++.++++++.-|| .++.+-|.++|+
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFe 425 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFE 425 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHH
Confidence 55566677776654322233568888888888888999999999999887666 7888899998777 588999999999
Q ss_pred HHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 007461 459 KMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDK--VSYTTVISAYNRAREFDMCVKFYNEFRMN 533 (603)
Q Consensus 459 ~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~--~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 533 (603)
.-+++ ..-+..--...++-+...++-..+..+|++.+..++.||. ..|..++.-=+.-|++..+.++-+++...
T Consensus 426 LGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~a 501 (656)
T KOG1914|consen 426 LGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTA 501 (656)
T ss_pred HHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 87765 2334444566778888899999999999999988777665 57999999989999999999998877654
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.78 E-value=0.00013 Score=66.38 Aligned_cols=313 Identities=12% Similarity=0.049 Sum_probs=165.1
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHH-HHHHHHHHc
Q 007461 156 SRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYC-QIMEAYYKI 234 (603)
Q Consensus 156 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~-~ll~~~~~~ 234 (603)
.-+...+...|++.+|+.-|....+.+|.+-.++---...|...|+...|+.-+.+.++. .||-..-. .-...+.+.
T Consensus 42 lElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vllK~ 119 (504)
T KOG0624|consen 42 LELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVLLKQ 119 (504)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhhhhc
Confidence 334444555555666665555555554444444444445555556655566555555542 44432211 122345566
Q ss_pred CCHHHHHHHHHHHHhCCCCCCCcc---------HH--HHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007461 235 GDSEKVAALFLECKSRKLDSTPFS---------TH--MYKILCDSLGKSGRAFEALKFFRDMKEKGILEDPSIYASLICS 303 (603)
Q Consensus 235 g~~~~a~~~~~~~~~~~~~~~~~~---------~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 303 (603)
|.+++|..=|+.+...++...... .. .....+..+...|+...|++....+++.. .-|...|..-..+
T Consensus 120 Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc 198 (504)
T KOG0624|consen 120 GELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKC 198 (504)
T ss_pred ccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHH
Confidence 666666666666665544221100 00 11223344455666666666666666541 2255556666666
Q ss_pred HHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHH
Q 007461 304 FASITEVKLAEELFKEAEEKGMLRDPEVCLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRRGYWAA 383 (603)
Q Consensus 304 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 383 (603)
|...|++..|..=++.+.+... -+...+-.+-..+...|+.+.++..+++..+.++ +...+ |..-....+.
T Consensus 199 ~i~~~e~k~AI~Dlk~askLs~-DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldp--dHK~C------f~~YKklkKv 269 (504)
T KOG0624|consen 199 YIAEGEPKKAIHDLKQASKLSQ-DNTEGHYKISQLLYTVGDAENSLKEIRECLKLDP--DHKLC------FPFYKKLKKV 269 (504)
T ss_pred HHhcCcHHHHHHHHHHHHhccc-cchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCc--chhhH------HHHHHHHHHH
Confidence 6666666666665555554432 2444444555566666666666666666655443 21111 0000111111
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHh---hHHHHHHHHHccCCHHHHHHHHHHH
Q 007461 384 VKVYEQLISQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQKGFDKCVV---AYSSMVAMYGKTGRIRDAMWLVAKM 460 (603)
Q Consensus 384 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m 460 (603)
.+.++.| ......+++.++.+-.+...+........ .+..+-.++...|++.+|++.-.+.
T Consensus 270 ~K~les~----------------e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~ev 333 (504)
T KOG0624|consen 270 VKSLESA----------------EQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEV 333 (504)
T ss_pred HHHHHHH----------------HHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHH
Confidence 1112221 12334566666666666666653221222 3334445556677788888887777
Q ss_pred HHcCCCCC-HhHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 007461 461 KAKGCEPN-VWIYNSLMDMHGRAKNLRQVEKLWKEMERR 498 (603)
Q Consensus 461 ~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 498 (603)
++. .|| +.++---..+|.-...++.|+.-|+...+.
T Consensus 334 L~~--d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 334 LDI--DPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred Hhc--CchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 764 444 666666667777777788888888877754
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.7e-06 Score=83.84 Aligned_cols=222 Identities=10% Similarity=0.015 Sum_probs=113.5
Q ss_pred HccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCHHHHHH
Q 007461 163 VRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAA 242 (603)
Q Consensus 163 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~ 242 (603)
.+.|++.+|.-+|+...+.+|.+..+|..|......+++-..|+..+++..+.+.. |......|.-.|...|.-..|.+
T Consensus 296 m~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~q~~Al~ 374 (579)
T KOG1125|consen 296 MKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGLQNQALK 374 (579)
T ss_pred HhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhhHHHHHH
Confidence 34555666666666666655556666666666666666666666666655554322 44455555555555555555555
Q ss_pred HHHHHHhCCCCC-----CCccHHHHHHHHHHHhccCCHHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Q 007461 243 LFLECKSRKLDS-----TPFSTHMYKILCDSLGKSGRAFEALKFFRDMK-EKGILEDPSIYASLICSFASITEVKLAEEL 316 (603)
Q Consensus 243 ~~~~~~~~~~~~-----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~ 316 (603)
.++......+.- ...+...-+. ..+.....+....++|-++. ..+..+|......|.-.|--.|++++|...
T Consensus 375 ~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDc 452 (579)
T KOG1125|consen 375 MLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDC 452 (579)
T ss_pred HHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHH
Confidence 555543221110 0000000000 12223333444445554443 223334555555555555556666666666
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 007461 317 FKEAEEKGMLRDPEVCLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQ 389 (603)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 389 (603)
|+.++... +.|..+||.|...++...+.++|+..|.+..+..+.. +.++..|.-.|...|.+++|.+.|-.
T Consensus 453 f~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~y-VR~RyNlgIS~mNlG~ykEA~~hlL~ 523 (579)
T KOG1125|consen 453 FEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGY-VRVRYNLGISCMNLGAYKEAVKHLLE 523 (579)
T ss_pred HHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCe-eeeehhhhhhhhhhhhHHHHHHHHHH
Confidence 66665543 2355566666666666666666666666666554421 22344455556666666666665544
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.76 E-value=8.2e-07 Score=82.85 Aligned_cols=255 Identities=10% Similarity=0.033 Sum_probs=160.4
Q ss_pred HHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHH
Q 007461 302 CSFASITEVKLAEELFKEAEEKGMLRDPEVCLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRRGYW 381 (603)
Q Consensus 302 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 381 (603)
+-+.-.|++..+..-.+ ........+.....-+.++|...|+.+.+. .++.... .|.......+...+...++-+
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e 83 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKE 83 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHH
T ss_pred HHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchH
Confidence 34445788888876555 222222223445556778888999877544 4443433 455555555555444435556
Q ss_pred HHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCCHHHHHHHHHHH
Q 007461 382 AAVKVYEQLISQGCIP-GQVTYASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKM 460 (603)
Q Consensus 382 ~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 460 (603)
.++.-+++.......+ +..........+...|++++|++++... .+.......+..|.+.++++.|.+.++.|
T Consensus 84 ~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~ 157 (290)
T PF04733_consen 84 SALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNM 157 (290)
T ss_dssp CHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 6666555544333232 2222233334566789999998887642 35677788889999999999999999999
Q ss_pred HHcCCCCCHhHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 007461 461 KAKGCEPNVWIYNSLMDMHGR----AKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNRAREFDMCVKFYNEFRMNGGV 536 (603)
Q Consensus 461 ~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 536 (603)
.+. ..|... ..+..++.. ...+.+|..+|+++.+. ..++..+.+.+..++...|++++|.+++.+....+..
T Consensus 158 ~~~--~eD~~l-~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~ 233 (290)
T PF04733_consen 158 QQI--DEDSIL-TQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN 233 (290)
T ss_dssp HCC--SCCHHH-HHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC
T ss_pred Hhc--CCcHHH-HHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC
Confidence 874 444433 334444332 34688999999998764 5678888899999999999999999999998766544
Q ss_pred CCHHHHHHHHHHHHccCCH-HHHHHHHHHHHhCCCCCCH
Q 007461 537 IDRAIAGIMVGVFSKLSQI-EELVKLLQDMKSEGTKLDE 574 (603)
Q Consensus 537 ~~~~~~~~l~~~~~~~g~~-~~A~~~~~~m~~~g~~~~~ 574 (603)
++.+...++-+....|+. +.+.+.+.++.+. .|+.
T Consensus 234 -~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~--~p~h 269 (290)
T PF04733_consen 234 -DPDTLANLIVCSLHLGKPTEAAERYLSQLKQS--NPNH 269 (290)
T ss_dssp -HHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH--TTTS
T ss_pred -CHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh--CCCC
Confidence 556666677777777776 6677888887754 4543
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.74 E-value=4.2e-07 Score=84.77 Aligned_cols=151 Identities=14% Similarity=0.159 Sum_probs=95.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHc----c
Q 007461 372 NGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGK----T 447 (603)
Q Consensus 372 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~ 447 (603)
..+...|++++|++++..- .+.......+..+.+.++++.|.+.++.|.+.+ .| .+...+..++.. .
T Consensus 110 ~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~--eD-~~l~qLa~awv~l~~g~ 180 (290)
T PF04733_consen 110 TILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQID--ED-SILTQLAEAWVNLATGG 180 (290)
T ss_dssp HHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS--CC-HHHHHHHHHHHHHHHTT
T ss_pred HHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--Cc-HHHHHHHHHHHHHHhCc
Confidence 3445567777777766542 344556667777778888888888888877653 22 233334433332 3
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH-HHHHHH
Q 007461 448 GRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNRAREF-DMCVKF 526 (603)
Q Consensus 448 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~-~~a~~~ 526 (603)
+.+.+|..+|+++.+. ..+++.+.+.+..++...|++++|++++.+..+... -|..++..++.+....|+. +.+.++
T Consensus 181 e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~-~~~d~LaNliv~~~~~gk~~~~~~~~ 258 (290)
T PF04733_consen 181 EKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDP-NDPDTLANLIVCSLHLGKPTEAAERY 258 (290)
T ss_dssp TCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-C-CHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred hhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc-CCHHHHHHHHHHHHHhCCChhHHHHH
Confidence 3577888888887654 556777778888888888888888888888765432 2445666677766777776 566777
Q ss_pred HHHHHHC
Q 007461 527 YNEFRMN 533 (603)
Q Consensus 527 ~~~~~~~ 533 (603)
+.+++..
T Consensus 259 l~qL~~~ 265 (290)
T PF04733_consen 259 LSQLKQS 265 (290)
T ss_dssp HHHCHHH
T ss_pred HHHHHHh
Confidence 7777664
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.73 E-value=3.9e-06 Score=81.35 Aligned_cols=255 Identities=15% Similarity=0.105 Sum_probs=191.3
Q ss_pred HhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhcc
Q 007461 193 MGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKS 272 (603)
Q Consensus 193 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 272 (603)
..-+.+.|...+|.-.|+..++.++. +...|..|.......++-..|+..+++..+.++. |..+.-.|.-.|...
T Consensus 292 G~~lm~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~----NleaLmaLAVSytNe 366 (579)
T KOG1125|consen 292 GCNLMKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELDPT----NLEALMALAVSYTNE 366 (579)
T ss_pred HHHHHhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc----cHHHHHHHHHHHhhh
Confidence 34467889999999999999887654 8889999999999999999999999999877654 467889999999999
Q ss_pred CCHHHHHHHHHHHHHCCCC--------CCHHHHHHHHHHHHccCCHHHHHHHHHHH-HHcCCCCCHHHHHHHHHHHHHcC
Q 007461 273 GRAFEALKFFRDMKEKGIL--------EDPSIYASLICSFASITEVKLAEELFKEA-EEKGMLRDPEVCLKLVLMYIEEG 343 (603)
Q Consensus 273 g~~~~A~~~~~~m~~~g~~--------p~~~~~~~ll~~~~~~g~~~~a~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~g 343 (603)
|.-.+|++++++.+....+ ++...-.. ........+....++|-++ .+.+...|+.+...|.-.|.-.|
T Consensus 367 g~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~ 444 (579)
T KOG1125|consen 367 GLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSG 444 (579)
T ss_pred hhHHHHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcch
Confidence 9999999999888653211 01100000 1112222333444444444 44455579999999999999999
Q ss_pred CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCChHHHHHHH
Q 007461 344 LVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQ-VTYASIINAYCRIALYSKAEKVF 422 (603)
Q Consensus 344 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~ 422 (603)
++++|.+.|+......+ -|...||.|...++...+.++|+..|++..+. .|+- .....|.-+|...|.+++|.+.|
T Consensus 445 efdraiDcf~~AL~v~P-nd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hl 521 (579)
T KOG1125|consen 445 EFDRAVDCFEAALQVKP-NDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHL 521 (579)
T ss_pred HHHHHHHHHHHHHhcCC-chHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHH
Confidence 99999999999998877 47778999999999999999999999999885 4553 23445566789999999999988
Q ss_pred HHHHH---c------CCCcCHhhHHHHHHHHHccCCHHHHHHHH
Q 007461 423 IEMQQ---K------GFDKCVVAYSSMVAMYGKTGRIRDAMWLV 457 (603)
Q Consensus 423 ~~~~~---~------~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 457 (603)
-..+. . +..++...|..|=.++.-.++.+-+.+..
T Consensus 522 L~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a~ 565 (579)
T KOG1125|consen 522 LEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEAA 565 (579)
T ss_pred HHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHhc
Confidence 76542 2 12234567877777777778777555544
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.4e-06 Score=86.66 Aligned_cols=221 Identities=12% Similarity=0.067 Sum_probs=179.4
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 007461 326 LRDPEVCLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASI 405 (603)
Q Consensus 326 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 405 (603)
+|--..-..+...+.+.|-...|..+|+++. .|.-+|.+|...|+..+|..+..+..++ +||...|..+
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~L 463 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLL 463 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHh
Confidence 3344455568888999999999999999875 5888999999999999999999998873 7899999999
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCH
Q 007461 406 INAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNL 485 (603)
Q Consensus 406 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 485 (603)
.+......-+++|.++++..... .-..+.....+.++++++.+.|+.-.+.+ +--..+|-.+..+..+.+++
T Consensus 464 GDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~ 535 (777)
T KOG1128|consen 464 GDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKE 535 (777)
T ss_pred hhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhh
Confidence 99888888889999998875443 11111222234789999999999877652 34567888888888899999
Q ss_pred HHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 007461 486 RQVEKLWKEMERRKVTPDK-VSYTTVISAYNRAREFDMCVKFYNEFRMNGGVIDRAIAGIMVGVFSKLSQIEELVKLLQD 564 (603)
Q Consensus 486 ~~a~~~~~~m~~~~~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 564 (603)
..|.+.|..... ..||. ..||.+-.+|.+.|+-.+|...+++..+.+.. +..+|...+-...+.|.+++|++.+.+
T Consensus 536 q~av~aF~rcvt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~-~w~iWENymlvsvdvge~eda~~A~~r 612 (777)
T KOG1128|consen 536 QAAVKAFHRCVT--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQ-HWQIWENYMLVSVDVGEFEDAIKAYHR 612 (777)
T ss_pred HHHHHHHHHHhh--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCC-CCeeeechhhhhhhcccHHHHHHHHHH
Confidence 999999999984 46766 56999999999999999999999999998744 556677777788899999999999998
Q ss_pred HHhC
Q 007461 565 MKSE 568 (603)
Q Consensus 565 m~~~ 568 (603)
+.+.
T Consensus 613 ll~~ 616 (777)
T KOG1128|consen 613 LLDL 616 (777)
T ss_pred HHHh
Confidence 8764
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.70 E-value=2.4e-05 Score=74.15 Aligned_cols=226 Identities=11% Similarity=-0.026 Sum_probs=172.4
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC-ChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcH--H
Q 007461 127 LVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRAR-KFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMY--Y 203 (603)
Q Consensus 127 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~ 203 (603)
+...++.++|+.+.+++++.+ +-+..+|+..-..+...| ++++++..++++...++.+..+|+.....+.+.|.. +
T Consensus 47 l~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~ 125 (320)
T PLN02789 47 YASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAAN 125 (320)
T ss_pred HHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhH
Confidence 334567889999999998876 445567777766777777 689999999999999999999999877667667763 6
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhcc---CC----HH
Q 007461 204 STILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKS---GR----AF 276 (603)
Q Consensus 204 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~----~~ 276 (603)
+++.+++++.+.+.. |..+|+....++.+.|+++++++.++++.+.++.. ..+|+.....+.+. |. .+
T Consensus 126 ~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N----~sAW~~R~~vl~~~~~l~~~~~~~e 200 (320)
T PLN02789 126 KELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRN----NSAWNQRYFVITRSPLLGGLEAMRD 200 (320)
T ss_pred HHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCc----hhHHHHHHHHHHhccccccccccHH
Confidence 789999999987654 88899999999999999999999999999887654 34788777666554 33 35
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC---------
Q 007461 277 EALKFFRDMKEKGILEDPSIYASLICSFASI----TEVKLAEELFKEAEEKGMLRDPEVCLKLVLMYIEEG--------- 343 (603)
Q Consensus 277 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~----g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--------- 343 (603)
+.++...+++... +-|...|+-+...+... +...+|.....++.+.+ +.+......|++.|+...
T Consensus 201 ~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~~~~~~~~~~~~ 278 (320)
T PLN02789 201 SELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCEGLQPTAEFRDT 278 (320)
T ss_pred HHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHhhhccchhhhhh
Confidence 7888887887763 23677888887777763 34566888888877654 346778888999998642
Q ss_pred ---------CHHHHHHHHHHHHhCCC
Q 007461 344 ---------LVEKTLDVVESMKNAKL 360 (603)
Q Consensus 344 ---------~~~~a~~~~~~~~~~~~ 360 (603)
..++|.++++.+.+.++
T Consensus 279 ~~~~~~~~~~~~~a~~~~~~l~~~d~ 304 (320)
T PLN02789 279 VDTLAEELSDSTLAQAVCSELEVADP 304 (320)
T ss_pred hhccccccccHHHHHHHHHHHHhhCc
Confidence 34789999999965443
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.68 E-value=4.9e-06 Score=76.52 Aligned_cols=184 Identities=14% Similarity=0.025 Sum_probs=81.5
Q ss_pred hhHHHHHHhcCCCChHHHHHHHHHHhhCCCCCCC-HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH---HHHHHH
Q 007461 83 FDSFLHGMLKDPQTQELAYDYYNEAKKLPEFRPE-KSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDA---HTCSRL 158 (603)
Q Consensus 83 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l 158 (603)
+......+...++..+ |...|+.+.....-.|. ...+..+...+.+.|++++|...++++.+... .+. .++..+
T Consensus 36 ~~~~g~~~~~~~~~~~-A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~a~~~~ 113 (235)
T TIGR03302 36 LYEEAKEALDSGDYTE-AIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHP-NHPDADYAYYLR 113 (235)
T ss_pred HHHHHHHHHHcCCHHH-HHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCc-CCCchHHHHHHH
Confidence 4444444555555554 66666665543211111 12445555666666666666666666655431 111 123333
Q ss_pred HHHHHcc--------CChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 007461 159 VASCVRA--------RKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEA 230 (603)
Q Consensus 159 l~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 230 (603)
...+... |+++.|.+.++.+....|.+...+..+....... .... .....+...
T Consensus 114 g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~----------~~~~--------~~~~~~a~~ 175 (235)
T TIGR03302 114 GLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLR----------NRLA--------GKELYVARF 175 (235)
T ss_pred HHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHH----------HHHH--------HHHHHHHHH
Confidence 3333322 3444555555555444443333222221110000 0000 001133444
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 007461 231 YYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKE 287 (603)
Q Consensus 231 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 287 (603)
|.+.|++++|...++......+.. +.....+..+..++.+.|++++|...++.+..
T Consensus 176 ~~~~g~~~~A~~~~~~al~~~p~~-~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~ 231 (235)
T TIGR03302 176 YLKRGAYVAAINRFETVVENYPDT-PATEEALARLVEAYLKLGLKDLAQDAAAVLGA 231 (235)
T ss_pred HHHcCChHHHHHHHHHHHHHCCCC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 555566666666665555443221 11234555556666666666666665555543
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.7e-05 Score=84.49 Aligned_cols=238 Identities=13% Similarity=0.041 Sum_probs=174.1
Q ss_pred HHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCC-----ChhhHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 007461 175 LQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVL-----DSGCYCQIMEAYYKIGDSEKVAALFLECKS 249 (603)
Q Consensus 175 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p-----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 249 (603)
|++.....|.....|-..|......++.++|++++++.+.. +.+ -...|.++++.-..-|.-+...++|++..+
T Consensus 1447 ferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcq 1525 (1710)
T KOG1070|consen 1447 FERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQ 1525 (1710)
T ss_pred HHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHH
Confidence 44555555667778888888888888888888888887653 211 123677777777777888888888988876
Q ss_pred CCCCCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCC-CC
Q 007461 250 RKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEKGILEDPSIYASLICSFASITEVKLAEELFKEAEEKGML-RD 328 (603)
Q Consensus 250 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~ 328 (603)
..-. ...|..|...|.+.+.+++|-++|+.|.++ ..-....|...+..+.+.++-+.|+.++.++++.-.. -.
T Consensus 1526 ycd~-----~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eH 1599 (1710)
T KOG1070|consen 1526 YCDA-----YTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEH 1599 (1710)
T ss_pred hcch-----HHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhh
Confidence 5432 236888889999999999999999999876 2345677888888888888888999999888775221 13
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH--HHHHHHH
Q 007461 329 PEVCLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQ--VTYASII 406 (603)
Q Consensus 329 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~--~~~~~ll 406 (603)
.......+.+-.+.|+.+.+..+|+......++ -...|+.+|..=.+.|+.+.+..+|++....++.|-. ..|...+
T Consensus 1600 v~~IskfAqLEFk~GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwL 1678 (1710)
T KOG1070|consen 1600 VEFISKFAQLEFKYGDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWL 1678 (1710)
T ss_pred HHHHHHHHHHHhhcCCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHH
Confidence 455666777778889999999999988877664 3347888999888899999999999998887766543 3445555
Q ss_pred HHHHhcCChHHHHH
Q 007461 407 NAYCRIALYSKAEK 420 (603)
Q Consensus 407 ~~~~~~g~~~~a~~ 420 (603)
..=-+.|+-..++.
T Consensus 1679 eyEk~~Gde~~vE~ 1692 (1710)
T KOG1070|consen 1679 EYEKSHGDEKNVEY 1692 (1710)
T ss_pred HHHHhcCchhhHHH
Confidence 44444455444333
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.64 E-value=2.6e-05 Score=83.18 Aligned_cols=226 Identities=11% Similarity=0.067 Sum_probs=143.0
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCH---HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHH
Q 007461 364 DCISCAIVNGFSKRRGYWAAVKVYEQLISQ-GCIPGQ---VTYASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSS 439 (603)
Q Consensus 364 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~p~~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 439 (603)
...|-..|....+.++.++|.++.++.... ++.-.. ..|.++++.-...|.-+...++|+++.+.- .| ...|..
T Consensus 1458 Si~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc-d~-~~V~~~ 1535 (1710)
T KOG1070|consen 1458 SILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC-DA-YTVHLK 1535 (1710)
T ss_pred chHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc-ch-HHHHHH
Confidence 344666666666666777777766665542 111111 234455555455566677777777777652 22 456777
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHh
Q 007461 440 MVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDK---VSYTTVISAYNR 516 (603)
Q Consensus 440 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~---~~~~~li~~~~~ 516 (603)
|...|.+.+.+++|.++++.|.++ +.....+|...+..+.++++-+.|..++.+..+. -|.. ....-.+..-.+
T Consensus 1536 L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eHv~~IskfAqLEFk 1612 (1710)
T KOG1070|consen 1536 LLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQEHVEFISKFAQLEFK 1612 (1710)
T ss_pred HHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhhhHHHHHHHHHHHhh
Confidence 777788888888888888887765 3456677777777777777777777777777643 2331 122333334456
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCcHHHHH
Q 007461 517 AREFDMCVKFYNEFRMNGGVIDRAIAGIMVGVFSKLSQIEELVKLLQDMKSEGTKLDE--RLYHSAMNALRDAGLQMQAQ 594 (603)
Q Consensus 517 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~--~~~~~ll~a~~~~g~~~~a~ 594 (603)
.|+.+++..+|+......++ -...|+.+++.-.++|+.+.+..+|++....++.|-. ..|...+.-=..+|+.+.++
T Consensus 1613 ~GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE 1691 (1710)
T KOG1070|consen 1613 YGDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVE 1691 (1710)
T ss_pred cCCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHH
Confidence 77888888888777765433 4567777888777888888888888888777766543 34555554445556654443
Q ss_pred H
Q 007461 595 W 595 (603)
Q Consensus 595 ~ 595 (603)
.
T Consensus 1692 ~ 1692 (1710)
T KOG1070|consen 1692 Y 1692 (1710)
T ss_pred H
Confidence 3
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.60 E-value=7.1e-08 Score=56.84 Aligned_cols=34 Identities=29% Similarity=0.439 Sum_probs=28.5
Q ss_pred CCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007461 215 AGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECK 248 (603)
Q Consensus 215 ~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 248 (603)
.|+.||..||+.||++|++.|++++|.++|++|+
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 3778888888888888888888888888888773
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.60 E-value=6.8e-08 Score=56.92 Aligned_cols=28 Identities=32% Similarity=0.515 Sum_probs=10.4
Q ss_pred CCCHhHHHHHHHHHHhcCCHHHHHHHHH
Q 007461 466 EPNVWIYNSLMDMHGRAKNLRQVEKLWK 493 (603)
Q Consensus 466 ~p~~~~~~~li~~~~~~g~~~~a~~~~~ 493 (603)
.||..+|++||++|++.|++++|.++|+
T Consensus 4 ~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~ 31 (34)
T PF12854_consen 4 EPDVVTYNTLIDGYCKAGRVDEAFELFD 31 (34)
T ss_pred CCcHhHHHHHHHHHHHCCCHHHHHHHHH
Confidence 3333333333333333333333333333
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.4e-05 Score=76.14 Aligned_cols=144 Identities=13% Similarity=0.022 Sum_probs=107.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCc
Q 007461 122 LLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHM 201 (603)
Q Consensus 122 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 201 (603)
-....+...|++++|+..++.++... +.|...+......+.+.++.++|.+.++.+....|.....+-.+..+|.+.|+
T Consensus 311 G~A~~~~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~ 389 (484)
T COG4783 311 GRALQTYLAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGK 389 (484)
T ss_pred HHHHHHHHhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCC
Confidence 33444556788888888888877653 45566666677778888888888888888888777667777888888888888
Q ss_pred HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccCCHHHHHHH
Q 007461 202 YYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKF 281 (603)
Q Consensus 202 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 281 (603)
+.+|+..++....... -|+..|..|..+|...|+..++..-. ...|.-.|++++|+..
T Consensus 390 ~~eai~~L~~~~~~~p-~dp~~w~~LAqay~~~g~~~~a~~A~---------------------AE~~~~~G~~~~A~~~ 447 (484)
T COG4783 390 PQEAIRILNRYLFNDP-EDPNGWDLLAQAYAELGNRAEALLAR---------------------AEGYALAGRLEQAIIF 447 (484)
T ss_pred hHHHHHHHHHHhhcCC-CCchHHHHHHHHHHHhCchHHHHHHH---------------------HHHHHhCCCHHHHHHH
Confidence 8888888888776643 37778888888888888877766543 3445667788888888
Q ss_pred HHHHHHC
Q 007461 282 FRDMKEK 288 (603)
Q Consensus 282 ~~~m~~~ 288 (603)
+....+.
T Consensus 448 l~~A~~~ 454 (484)
T COG4783 448 LMRASQQ 454 (484)
T ss_pred HHHHHHh
Confidence 7777655
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.3e-05 Score=70.21 Aligned_cols=164 Identities=15% Similarity=0.058 Sum_probs=130.7
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhh
Q 007461 116 EKSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGG 195 (603)
Q Consensus 116 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 195 (603)
+... ..+...+...|+-+....+........ +.|.......+....+.|++..|...+++.....++|..+|+.+.-+
T Consensus 66 d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaa 143 (257)
T COG5010 66 DLSI-AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAA 143 (257)
T ss_pred hHHH-HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHH
Confidence 4444 666777888888888888877754332 45666777788888999999999999999999989999999999999
Q ss_pred hhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccCCH
Q 007461 196 YNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRA 275 (603)
Q Consensus 196 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 275 (603)
|.+.|+++.|..-|.+..+.-.. ++..++.|.-.|.-.|+.+.|+.++.......... ...-..+.......|++
T Consensus 144 ldq~Gr~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad----~~v~~NLAl~~~~~g~~ 218 (257)
T COG5010 144 LDQLGRFDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAAD----SRVRQNLALVVGLQGDF 218 (257)
T ss_pred HHHccChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCc----hHHHHHHHHHHhhcCCh
Confidence 99999999999999888886433 56678888888888899999999998877665432 35678888888999999
Q ss_pred HHHHHHHHHHH
Q 007461 276 FEALKFFRDMK 286 (603)
Q Consensus 276 ~~A~~~~~~m~ 286 (603)
++|.++...-.
T Consensus 219 ~~A~~i~~~e~ 229 (257)
T COG5010 219 REAEDIAVQEL 229 (257)
T ss_pred HHHHhhccccc
Confidence 99988765543
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.54 E-value=1e-05 Score=70.95 Aligned_cols=154 Identities=8% Similarity=-0.030 Sum_probs=127.3
Q ss_pred HHHhcCCCChHHHHHHHHHHhhCCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCC
Q 007461 88 HGMLKDPQTQELAYDYYNEAKKLPEFRPEKSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARK 167 (603)
Q Consensus 88 ~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 167 (603)
..+...|+..+ .......... ..+.+....+..+....+.|++..|...+++..... ++|..+|+.+.-+|.+.|+
T Consensus 74 ~a~~~~G~a~~-~l~~~~~~~~--~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~Gr 149 (257)
T COG5010 74 TALYLRGDADS-SLAVLQKSAI--AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQLGR 149 (257)
T ss_pred HHHHhcccccc-hHHHHhhhhc--cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHccC
Confidence 33444455544 3333333322 224566777789999999999999999999998876 8899999999999999999
Q ss_pred hHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHH
Q 007461 168 FKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLE 246 (603)
Q Consensus 168 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 246 (603)
++.|+..|.+..+..+.+....|.+...|.-.|+.+.|..++......+.. |..+-..+.......|++++|+.+-..
T Consensus 150 ~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~i~~~ 227 (257)
T COG5010 150 FDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAEDIAVQ 227 (257)
T ss_pred hhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHhhccc
Confidence 999999999999999999999999999999999999999999998876543 677788888899999999999988654
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.54 E-value=4.1e-05 Score=80.10 Aligned_cols=135 Identities=7% Similarity=0.048 Sum_probs=84.8
Q ss_pred CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHH
Q 007461 114 RPEKSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAM 193 (603)
Q Consensus 114 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 193 (603)
..++..+..|.....+.|.+++|+.+++...+.. +-+......+...+.+.+++++|+..+++.....+.+....+.+.
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a 161 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEA 161 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHH
Confidence 4456666666666666666666666666666553 233445555666666666666666666666666666666666666
Q ss_pred hhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 007461 194 GGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSR 250 (603)
Q Consensus 194 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 250 (603)
.++.+.|++++|..+|+++...+. -+..++..+...+-+.|+.++|...|+.....
T Consensus 162 ~~l~~~g~~~~A~~~y~~~~~~~p-~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 162 KSWDEIGQSEQADACFERLSRQHP-EFENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred HHHHHhcchHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 666666666666666666665322 13556666666666666666666666665544
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.52 E-value=1.9e-05 Score=69.57 Aligned_cols=156 Identities=10% Similarity=0.093 Sum_probs=112.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHH
Q 007461 124 IRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYY 203 (603)
Q Consensus 124 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 203 (603)
+..|...|+++.+....+.+.. |. ..+...++.+++...++.....+|.+...|..+...|...|+++
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~ 90 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYD 90 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHH
Confidence 3456777887776554432211 10 01123566777888888888888888889999999999999999
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHH-HHcCC--HHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccCCHHHHHH
Q 007461 204 STILVYEKMKSAGIVLDSGCYCQIMEAY-YKIGD--SEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALK 280 (603)
Q Consensus 204 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~-~~~g~--~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 280 (603)
+|...|++..+.... +...+..+..++ ...|+ .++|.+++++....++.. ..++..+...+.+.|++++|+.
T Consensus 91 ~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~----~~al~~LA~~~~~~g~~~~Ai~ 165 (198)
T PRK10370 91 NALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTPQTREMIDKALALDANE----VTALMLLASDAFMQADYAQAIE 165 (198)
T ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCC----hhHHHHHHHHHHHcCCHHHHHH
Confidence 999999888886533 667777777764 66676 488999998888777653 4578888888888999999999
Q ss_pred HHHHHHHCCCCCCHHHH
Q 007461 281 FFRDMKEKGILEDPSIY 297 (603)
Q Consensus 281 ~~~~m~~~g~~p~~~~~ 297 (603)
.|+++.+.. .|+..-+
T Consensus 166 ~~~~aL~l~-~~~~~r~ 181 (198)
T PRK10370 166 LWQKVLDLN-SPRVNRT 181 (198)
T ss_pred HHHHHHhhC-CCCccHH
Confidence 998887763 3444333
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.52 E-value=2.1e-05 Score=72.32 Aligned_cols=99 Identities=8% Similarity=-0.054 Sum_probs=57.7
Q ss_pred CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchh---h
Q 007461 115 PEKSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDA---HTCSRLVASCVRARKFKIANTLLQVFITDGEIALL---A 188 (603)
Q Consensus 115 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~ 188 (603)
.....+..+...+.+.|++++|...++++.... +.+. .++..+..++...|++++|...++.+.+..|.+.. +
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 445566666777777777777777777776554 2222 35556666677777777777777777666553332 3
Q ss_pred HHHHHhhhhhc--------CcHHHHHHHHHHHHh
Q 007461 189 FNSAMGGYNKL--------HMYYSTILVYEKMKS 214 (603)
Q Consensus 189 ~~~l~~~~~~~--------~~~~~a~~~~~~m~~ 214 (603)
+..+...+... |++++|.+.|+.+.+
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 143 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIR 143 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHH
Confidence 44444444332 344445555544444
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.51 E-value=1.3e-05 Score=80.03 Aligned_cols=221 Identities=14% Similarity=0.064 Sum_probs=169.6
Q ss_pred CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHH
Q 007461 218 VLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEKGILEDPSIY 297 (603)
Q Consensus 218 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 297 (603)
+|--..-..+...+...|-...|..+|++. ..|..+|.+|...|+...|..+..+..++ +||...|
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erl------------emw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~ly 460 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERL------------EMWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLY 460 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhH------------HHHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhH
Confidence 333334456778888999999999999875 36888999999999999999988888774 7888888
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhc
Q 007461 298 ASLICSFASITEVKLAEELFKEAEEKGMLRDPEVCLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSKR 377 (603)
Q Consensus 298 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 377 (603)
..+.+...+..-+++|.++.+..... .-..+.....+.++++++.+.|+.-.+.++ ....+|-.+..+..+.
T Consensus 461 c~LGDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~np-lq~~~wf~~G~~ALql 532 (777)
T KOG1128|consen 461 CLLGDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINP-LQLGTWFGLGCAALQL 532 (777)
T ss_pred HHhhhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCc-cchhHHHhccHHHHHH
Confidence 88888777766778888877764332 222333334457889999998887766655 3455787888888888
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCCHHHHHHHH
Q 007461 378 RGYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLV 457 (603)
Q Consensus 378 ~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 457 (603)
+++..|.+.|..-.... +-+...||.+-.+|.+.++-.+|...+.+..+.+ .-+...|...+....+.|.+++|.+.+
T Consensus 533 ek~q~av~aF~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~ 610 (777)
T KOG1128|consen 533 EKEQAAVKAFHRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAY 610 (777)
T ss_pred hhhHHHHHHHHHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHH
Confidence 99999999888877642 2344678999999999999999999999988887 455677777788888899999999988
Q ss_pred HHHHH
Q 007461 458 AKMKA 462 (603)
Q Consensus 458 ~~m~~ 462 (603)
.++.+
T Consensus 611 ~rll~ 615 (777)
T KOG1128|consen 611 HRLLD 615 (777)
T ss_pred HHHHH
Confidence 88765
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.1e-05 Score=67.14 Aligned_cols=110 Identities=7% Similarity=-0.110 Sum_probs=84.5
Q ss_pred HHHHHHHhhCCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHh
Q 007461 101 YDYYNEAKKLPEFRPEKSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFIT 180 (603)
Q Consensus 101 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 180 (603)
..+|+.+.+. .|+ .+..+...+...|++++|...|+...... +.+...|..+..++...|++++|...|+....
T Consensus 13 ~~~~~~al~~---~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~ 86 (144)
T PRK15359 13 EDILKQLLSV---DPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALM 86 (144)
T ss_pred HHHHHHHHHc---CHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 3456666653 233 35556777788888888888888887765 55777888888888888888888888888888
Q ss_pred cCCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCC
Q 007461 181 DGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAG 216 (603)
Q Consensus 181 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 216 (603)
..+.+..++..+..++...|++++|+..|+...+..
T Consensus 87 l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 87 LDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS 122 (144)
T ss_pred cCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 888888888888888888888888888888877753
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.48 E-value=0.00099 Score=60.79 Aligned_cols=297 Identities=9% Similarity=0.021 Sum_probs=152.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcH
Q 007461 123 LIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMY 202 (603)
Q Consensus 123 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 202 (603)
+...+..+|++..|+.-|...++.+ +.+-.++-.-...|...|+...|+.=|..+++..|.-..+-..-...+.+.|.+
T Consensus 44 lGk~lla~~Q~sDALt~yHaAve~d-p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gel 122 (504)
T KOG0624|consen 44 LGKELLARGQLSDALTHYHAAVEGD-PNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGEL 122 (504)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHcCC-chhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccH
Confidence 4444455555555555555544332 111112222223344445555555545554444332222223333344555555
Q ss_pred HHHHHHHHHHHhCCCCCC--------------hhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHH
Q 007461 203 YSTILVYEKMKSAGIVLD--------------SGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDS 268 (603)
Q Consensus 203 ~~a~~~~~~m~~~~~~p~--------------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~ 268 (603)
++|..-|+.+++.....+ .......+..+...||...|++....+.+..+ ++...|..-..+
T Consensus 123 e~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~----Wda~l~~~Rakc 198 (504)
T KOG0624|consen 123 EQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQP----WDASLRQARAKC 198 (504)
T ss_pred HHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCc----chhHHHHHHHHH
Confidence 555555555554322100 00122334445566777777777777665432 234566666777
Q ss_pred HhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHH-------------
Q 007461 269 LGKSGRAFEALKFFRDMKEKGILEDPSIYASLICSFASITEVKLAEELFKEAEEKGMLRDPEVCLKL------------- 335 (603)
Q Consensus 269 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l------------- 335 (603)
|...|.+..|+.-++..-+.. ..+..++--+-..+...|+.+.+....++.++.+ ||...+-..
T Consensus 199 ~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKld--pdHK~Cf~~YKklkKv~K~les 275 (504)
T KOG0624|consen 199 YIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKLD--PDHKLCFPFYKKLKKVVKSLES 275 (504)
T ss_pred HHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccC--cchhhHHHHHHHHHHHHHHHHH
Confidence 777777777776666554432 2244555555566667777777777777766643 333221110
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHh---hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHh
Q 007461 336 VLMYIEEGLVEKTLDVVESMKNAKLKISDC---ISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPG-QVTYASIINAYCR 411 (603)
Q Consensus 336 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~ 411 (603)
+......++|-++.+-.+...+.++..... .+..+-.++...+++.+|++.-.+.... .|| ..++.--..+|.-
T Consensus 276 ~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~--d~~dv~~l~dRAeA~l~ 353 (504)
T KOG0624|consen 276 AEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDI--DPDDVQVLCDRAEAYLG 353 (504)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhc--CchHHHHHHHHHHHHhh
Confidence 112334455666666666555554432222 2334445555666677777666666553 333 5566666666666
Q ss_pred cCChHHHHHHHHHHHHcC
Q 007461 412 IALYSKAEKVFIEMQQKG 429 (603)
Q Consensus 412 ~g~~~~a~~~~~~~~~~~ 429 (603)
...++.|+.-|+...+.+
T Consensus 354 dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 354 DEMYDDAIHDYEKALELN 371 (504)
T ss_pred hHHHHHHHHHHHHHHhcC
Confidence 666777776666666553
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.44 E-value=1.4e-05 Score=70.32 Aligned_cols=123 Identities=7% Similarity=-0.039 Sum_probs=99.5
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhh-hhhcCc--HHHHH
Q 007461 130 SKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGG-YNKLHM--YYSTI 206 (603)
Q Consensus 130 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~--~~~a~ 206 (603)
.++.+++...++...+.+ +.|...|..+...|...|++++|...|++.....+.+...+..+..+ +...|+ .++|.
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~ 130 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTR 130 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHH
Confidence 556677777777777766 67788888888888889999999999999888888888888888876 466676 58899
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC
Q 007461 207 LVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDS 254 (603)
Q Consensus 207 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 254 (603)
+++++..+.+.. +..++..+...+.+.|++++|...|+++.+.....
T Consensus 131 ~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~ 177 (198)
T PRK10370 131 EMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLDLNSPR 177 (198)
T ss_pred HHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 999988887544 67788888888889999999999998887766553
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.44 E-value=0.00016 Score=76.66 Aligned_cols=168 Identities=14% Similarity=0.137 Sum_probs=84.4
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHh
Q 007461 116 EKSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDA-HTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMG 194 (603)
Q Consensus 116 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 194 (603)
+...+..|+..+...+++++|.++.+...+.. |+. ..|-.+...+.+.++..++..+ .++.
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~--P~~i~~yy~~G~l~~q~~~~~~~~lv----------------~~l~ 91 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEH--KKSISALYISGILSLSRRPLNDSNLL----------------NLID 91 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--CcceehHHHHHHHHHhhcchhhhhhh----------------hhhh
Confidence 34456666666666666666666666555443 332 2222222244444444333322 2222
Q ss_pred hhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccCC
Q 007461 195 GYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGR 274 (603)
Q Consensus 195 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 274 (603)
......++.-...+...|.+.+ -+...+..+..+|-+.|+.++|..+++++.+.++. |..+.|.+...|... +
T Consensus 92 ~~~~~~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~----n~~aLNn~AY~~ae~-d 164 (906)
T PRK14720 92 SFSQNLKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKADRD----NPEIVKKLATSYEEE-D 164 (906)
T ss_pred hcccccchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcc----cHHHHHHHHHHHHHh-h
Confidence 2223333322222333333321 13335556666666666666666666666655522 345566666666666 6
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 007461 275 AFEALKFFRDMKEKGILEDPSIYASLICSFASITEVKLAEELFKEAEEK 323 (603)
Q Consensus 275 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 323 (603)
.++|.+++.+.... +...+++..+.+++.++...
T Consensus 165 L~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~ 198 (906)
T PRK14720 165 KEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHY 198 (906)
T ss_pred HHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhc
Confidence 66666665555432 33444555666666665554
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.40 E-value=0.00014 Score=77.11 Aligned_cols=166 Identities=17% Similarity=0.167 Sum_probs=106.4
Q ss_pred hchhHHHHHHhcCCCChHHHHHHHHHHhhCCCCCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 007461 81 KKFDSFLHGMLKDPQTQELAYDYYNEAKKLPEFRPEK-STLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLV 159 (603)
Q Consensus 81 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 159 (603)
..+..++..+...++..+ |.++.+...+.+ |+. ..|-.+...+.+.++.+.+..+ . ++
T Consensus 32 ~a~~~Li~~~~~~~~~de-ai~i~~~~l~~~---P~~i~~yy~~G~l~~q~~~~~~~~lv--~---------------~l 90 (906)
T PRK14720 32 KELDDLIDAYKSENLTDE-AKDICEEHLKEH---KKSISALYISGILSLSRRPLNDSNLL--N---------------LI 90 (906)
T ss_pred HHHHHHHHHHHhcCCHHH-HHHHHHHHHHhC---CcceehHHHHHHHHHhhcchhhhhhh--h---------------hh
Confidence 347788888877777776 999999877753 333 3344444466777776665555 2 22
Q ss_pred HHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCHHH
Q 007461 160 ASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEK 239 (603)
Q Consensus 160 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~ 239 (603)
.......++.....+...+.. -+.+..++-.+..+|-+.|+.++|..+++++++.... |+.+.|.+...|+.. ++++
T Consensus 91 ~~~~~~~~~~~ve~~~~~i~~-~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~-n~~aLNn~AY~~ae~-dL~K 167 (906)
T PRK14720 91 DSFSQNLKWAIVEHICDKILL-YGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRD-NPEIVKKLATSYEEE-DKEK 167 (906)
T ss_pred hhcccccchhHHHHHHHHHHh-hhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHh-hHHH
Confidence 333333334222333333332 2345557777888888888888888888888887633 777888888888888 8888
Q ss_pred HHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 007461 240 VAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEK 288 (603)
Q Consensus 240 a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 288 (603)
|++++.+...+ +...+++..+.+++.++...
T Consensus 168 A~~m~~KAV~~------------------~i~~kq~~~~~e~W~k~~~~ 198 (906)
T PRK14720 168 AITYLKKAIYR------------------FIKKKQYVGIEEIWSKLVHY 198 (906)
T ss_pred HHHHHHHHHHH------------------HHhhhcchHHHHHHHHHHhc
Confidence 88877665432 44455666666666666654
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.40 E-value=0.00027 Score=62.18 Aligned_cols=250 Identities=11% Similarity=0.053 Sum_probs=158.3
Q ss_pred HHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHH
Q 007461 302 CSFASITEVKLAEELFKEAEEKGMLRDPEVCLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRRGYW 381 (603)
Q Consensus 302 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 381 (603)
+-+.-.|++..+...-....... .+...-.-+.++|...|++.... .+++... .|.......+...+..-++.+
T Consensus 16 Rn~fY~Gnyq~~ine~~~~~~~~--~~~e~d~y~~raylAlg~~~~~~---~eI~~~~-~~~lqAvr~~a~~~~~e~~~~ 89 (299)
T KOG3081|consen 16 RNYFYLGNYQQCINEAEKFSSSK--TDVELDVYMYRAYLALGQYQIVI---SEIKEGK-ATPLQAVRLLAEYLELESNKK 89 (299)
T ss_pred HHHHHhhHHHHHHHHHHhhcccc--chhHHHHHHHHHHHHcccccccc---ccccccc-CChHHHHHHHHHHhhCcchhH
Confidence 33444677776665554443322 34444455667777777765433 3333333 233333333333333344444
Q ss_pred HHHH-HHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCCHHHHHHHHHHH
Q 007461 382 AAVK-VYEQLISQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKM 460 (603)
Q Consensus 382 ~a~~-~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 460 (603)
+-+. +.+.+.......+......-...|.+.|++++|.+...... +......=+..+.+..+++-|.+.+++|
T Consensus 90 ~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~m 163 (299)
T KOG3081|consen 90 SILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKM 163 (299)
T ss_pred HHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4433 44445444444444444444556889999999998887621 2344444455677888899999999999
Q ss_pred HHcCCCCCHhHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 007461 461 KAKGCEPNVWIYNSLMDMHGR----AKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNRAREFDMCVKFYNEFRMNGGV 536 (603)
Q Consensus 461 ~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 536 (603)
.+- -+..|.+.|..++.+ .+...+|.-+|++|.+ ...|+..+.+....++...|++++|..++++...+..+
T Consensus 164 q~i---ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~-k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~ 239 (299)
T KOG3081|consen 164 QQI---DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSE-KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK 239 (299)
T ss_pred Hcc---chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhc-ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC
Confidence 863 366677777777654 4568889999999986 36788899999999999999999999999999988665
Q ss_pred CCHHHHHHHHHHHHccCCH-HHHHHHHHHHHhC
Q 007461 537 IDRAIAGIMVGVFSKLSQI-EELVKLLQDMKSE 568 (603)
Q Consensus 537 ~~~~~~~~l~~~~~~~g~~-~~A~~~~~~m~~~ 568 (603)
++.+...++-+-...|+- +-..+.+..++..
T Consensus 240 -dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~ 271 (299)
T KOG3081|consen 240 -DPETLANLIVLALHLGKDAEVTERNLSQLKLS 271 (299)
T ss_pred -CHHHHHHHHHHHHHhCCChHHHHHHHHHHHhc
Confidence 666665555555555654 4445566666643
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.35 E-value=4.4e-05 Score=79.91 Aligned_cols=182 Identities=12% Similarity=0.048 Sum_probs=141.6
Q ss_pred HHHhcCCCChHHHHHHHHHHhhCCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCC
Q 007461 88 HGMLKDPQTQELAYDYYNEAKKLPEFRPEKSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARK 167 (603)
Q Consensus 88 ~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 167 (603)
.++..-+..++...+++.++.+. +....+-....+++.-.....+ ..+.+...+..|.....+.|.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~La~i~~~~g~ 101 (694)
T PRK15179 36 AALAEPGESEEAGRELLQQARQV-------------LERHAAVHKPAAALPELLDYVR-RYPHTELFQVLVARALEAAHR 101 (694)
T ss_pred HHhcCcccchhHHHHHHHHHHHH-------------HHHhhhhcchHhhHHHHHHHHH-hccccHHHHHHHHHHHHHcCC
Confidence 34445566666556666665531 1222222233333333333222 346678899999999999999
Q ss_pred hHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 007461 168 FKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLEC 247 (603)
Q Consensus 168 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 247 (603)
+++|..+++.+.+..|.+..++..+...+.+.+++++|+...++..+.... +......+..++.+.|++++|..+|+++
T Consensus 102 ~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~~a~~l~~~g~~~~A~~~y~~~ 180 (694)
T PRK15179 102 SDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILLEAKSWDEIGQSEQADACFERL 180 (694)
T ss_pred cHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999987544 6667788889999999999999999999
Q ss_pred HhCCCCCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 007461 248 KSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEK 288 (603)
Q Consensus 248 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 288 (603)
...++.. ..++..+...+...|+.++|...|+...+.
T Consensus 181 ~~~~p~~----~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 181 SRQHPEF----ENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred HhcCCCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9855432 468999999999999999999999999765
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.33 E-value=0.00084 Score=59.18 Aligned_cols=172 Identities=13% Similarity=0.119 Sum_probs=105.0
Q ss_pred HHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 007461 351 VVESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQKGF 430 (603)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 430 (603)
+.+.+.......+......-...|+..+++++|++..+... +......=...+.+..+++-|.+.++.|.+..
T Consensus 95 l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id- 167 (299)
T KOG3081|consen 95 LYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQID- 167 (299)
T ss_pred HHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-
Confidence 34444444443333333344455677777777777766621 22222233344556677778888888877653
Q ss_pred CcCHhhHHHHHHHHHc----cCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 007461 431 DKCVVAYSSMVAMYGK----TGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDKVS 506 (603)
Q Consensus 431 ~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~ 506 (603)
+..+.+.|..++.+ .+.+.+|.-+|++|-++ ..|+..+.+....++...|++++|+.++++....... +..+
T Consensus 168 --ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~-dpet 243 (299)
T KOG3081|consen 168 --EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK-DPET 243 (299)
T ss_pred --hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC-CHHH
Confidence 44566666665554 45677788888888765 5778888888888888888888888888887765432 4555
Q ss_pred HHHHHHHHHhcCCH-HHHHHHHHHHHHC
Q 007461 507 YTTVISAYNRAREF-DMCVKFYNEFRMN 533 (603)
Q Consensus 507 ~~~li~~~~~~g~~-~~a~~~~~~~~~~ 533 (603)
+..++-.-...|.. +...+.+.+++..
T Consensus 244 L~Nliv~a~~~Gkd~~~~~r~l~QLk~~ 271 (299)
T KOG3081|consen 244 LANLIVLALHLGKDAEVTERNLSQLKLS 271 (299)
T ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHhc
Confidence 55555544445543 4445556666554
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.29 E-value=3.7e-05 Score=63.58 Aligned_cols=98 Identities=13% Similarity=0.057 Sum_probs=66.3
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhh
Q 007461 117 KSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGY 196 (603)
Q Consensus 117 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 196 (603)
......+...+...|++++|.+.++.+...+ +.+...+..+...+...|++++|..+++.....++.+...+..+...|
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~ 95 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECL 95 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 3445556666667777777777777766654 445666666666677777777777777777666666666666666677
Q ss_pred hhcCcHHHHHHHHHHHHhC
Q 007461 197 NKLHMYYSTILVYEKMKSA 215 (603)
Q Consensus 197 ~~~~~~~~a~~~~~~m~~~ 215 (603)
...|++++|...|+...+.
T Consensus 96 ~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 96 LALGEPESALKALDLAIEI 114 (135)
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 7777777777777666664
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.28 E-value=0.0078 Score=62.28 Aligned_cols=93 Identities=11% Similarity=0.101 Sum_probs=49.2
Q ss_pred HHHHHHHHhcCCHH---HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007461 473 NSLMDMHGRAKNLR---QVEKLWKEMERRKVTPDKVSYTTVISAYNRAREFDMCVKFYNEFRMNGGVIDRAIAGIMVGVF 549 (603)
Q Consensus 473 ~~li~~~~~~g~~~---~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 549 (603)
+.|++.+.+.++.. +|+-+++...... +-|..+-..+|+.|+-.|-+..|.++|+.+.-+.+..|..-|- +...+
T Consensus 440 ~~Lid~~rktnd~~~l~eaI~LLE~glt~s-~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~-~~~~~ 517 (932)
T KOG2053|consen 440 NHLIDLWRKTNDLTDLFEAITLLENGLTKS-PHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHL-IFRRA 517 (932)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHHhhcC-CccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHH-HHHHH
Confidence 55566666666554 2333333333221 2234445566666666677777777776665555554444332 22334
Q ss_pred HccCCHHHHHHHHHHHHh
Q 007461 550 SKLSQIEELVKLLQDMKS 567 (603)
Q Consensus 550 ~~~g~~~~A~~~~~~m~~ 567 (603)
...|++..+...++...+
T Consensus 518 ~t~g~~~~~s~~~~~~lk 535 (932)
T KOG2053|consen 518 ETSGRSSFASNTFNEHLK 535 (932)
T ss_pred HhcccchhHHHHHHHHHH
Confidence 455666666666665543
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.28 E-value=3.9e-05 Score=63.79 Aligned_cols=97 Identities=10% Similarity=0.007 Sum_probs=69.2
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHc
Q 007461 155 CSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKI 234 (603)
Q Consensus 155 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 234 (603)
+..+...+...|++++|...|+......|.+..+|..+..++.+.|++++|...|++..+.+. .+...+..+..++.+.
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p-~~~~a~~~lg~~l~~~ 105 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA-SHPEPVYQTGVCLKMM 105 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCcHHHHHHHHHHHHc
Confidence 334556666777777777777777777777777777777777777777777777777776543 2666677777777777
Q ss_pred CCHHHHHHHHHHHHhCCC
Q 007461 235 GDSEKVAALFLECKSRKL 252 (603)
Q Consensus 235 g~~~~a~~~~~~~~~~~~ 252 (603)
|+.++|...|+......+
T Consensus 106 g~~~eAi~~~~~Al~~~p 123 (144)
T PRK15359 106 GEPGLAREAFQTAIKMSY 123 (144)
T ss_pred CCHHHHHHHHHHHHHhCC
Confidence 777777777777666544
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.26 E-value=0.00051 Score=65.94 Aligned_cols=161 Identities=11% Similarity=0.076 Sum_probs=118.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCC-HhHHHHHHHHH
Q 007461 401 TYASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPN-VWIYNSLMDMH 479 (603)
Q Consensus 401 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~ 479 (603)
-|..-+. +...|++++|+..++.+.+.. +.|+..+....+.+.+.++.++|.+.++++... .|+ ...+-.+..+|
T Consensus 309 ~YG~A~~-~~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~al 384 (484)
T COG4783 309 QYGRALQ-TYLAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQAL 384 (484)
T ss_pred HHHHHHH-HHHhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHH
Confidence 3444443 446688889999998887763 667777788888888999999999999998875 565 55566677888
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHH
Q 007461 480 GRAKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNRAREFDMCVKFYNEFRMNGGVIDRAIAGIMVGVFSKLSQIEELV 559 (603)
Q Consensus 480 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 559 (603)
.+.|++.+|+.++++.... .+-|...|..|..+|...|+..++.....+. |...|++++|+
T Consensus 385 l~~g~~~eai~~L~~~~~~-~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~------------------~~~~G~~~~A~ 445 (484)
T COG4783 385 LKGGKPQEAIRILNRYLFN-DPEDPNGWDLLAQAYAELGNRAEALLARAEG------------------YALAGRLEQAI 445 (484)
T ss_pred HhcCChHHHHHHHHHHhhc-CCCCchHHHHHHHHHHHhCchHHHHHHHHHH------------------HHhCCCHHHHH
Confidence 8999999999999888764 3457788999999999999888877665543 55678888888
Q ss_pred HHHHHHHhCC--CCCCHHHHHHHHHHH
Q 007461 560 KLLQDMKSEG--TKLDERLYHSAMNAL 584 (603)
Q Consensus 560 ~~~~~m~~~g--~~~~~~~~~~ll~a~ 584 (603)
..+....+.. ..|+..-+...++..
T Consensus 446 ~~l~~A~~~~~~~~~~~aR~dari~~~ 472 (484)
T COG4783 446 IFLMRASQQVKLGFPDWARADARIDQL 472 (484)
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHH
Confidence 8888887762 223333344444443
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.17 E-value=5.5e-05 Score=62.53 Aligned_cols=97 Identities=13% Similarity=0.074 Sum_probs=50.8
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHH
Q 007461 154 TCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYK 233 (603)
Q Consensus 154 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 233 (603)
....+...+...|++++|...++.+...++.+...|..+...+...|++++|...++...+.+ +.+...+..+...+..
T Consensus 19 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~ 97 (135)
T TIGR02552 19 QIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECLLA 97 (135)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHH
Confidence 344444445555555555555555555555555555555555555555555555555554443 1234444445555555
Q ss_pred cCCHHHHHHHHHHHHhCC
Q 007461 234 IGDSEKVAALFLECKSRK 251 (603)
Q Consensus 234 ~g~~~~a~~~~~~~~~~~ 251 (603)
.|++++|...|+...+.+
T Consensus 98 ~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 98 LGEPESALKALDLAIEIC 115 (135)
T ss_pred cCCHHHHHHHHHHHHHhc
Confidence 555555555555554443
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.0046 Score=54.27 Aligned_cols=186 Identities=11% Similarity=0.058 Sum_probs=123.4
Q ss_pred cCCHHHHHHHHHHHHhC---C-CCCCHh-hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH-HHHHHhcCCh
Q 007461 342 EGLVEKTLDVVESMKNA---K-LKISDC-ISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASI-INAYCRIALY 415 (603)
Q Consensus 342 ~g~~~~a~~~~~~~~~~---~-~~~~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l-l~~~~~~g~~ 415 (603)
..+.++..+++..+... + ..++.. .|..++-+....|+.+.|...++++...- |.+.-...+ ..-+-..|++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f--p~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF--PGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHhhch
Confidence 45677777777776532 2 333332 24555666677788888888888877653 333222111 1223456788
Q ss_pred HHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007461 416 SKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEM 495 (603)
Q Consensus 416 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 495 (603)
++|.++++.+.+.+ +.|..++--=+...-..|+.-+|++-+.+..+. +..|...|.-+...|...|++++|.-.++++
T Consensus 103 ~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 103 KEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred hhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 88888888888776 666677766666666677777888877777766 6678888888888888888888888888888
Q ss_pred HhCCCCCC-HHHHHHHHHHHHhcC---CHHHHHHHHHHHHHC
Q 007461 496 ERRKVTPD-KVSYTTVISAYNRAR---EFDMCVKFYNEFRMN 533 (603)
Q Consensus 496 ~~~~~~p~-~~~~~~li~~~~~~g---~~~~a~~~~~~~~~~ 533 (603)
+-. .|- ...+..+...+.-.| +.+.+.++|.+..+.
T Consensus 181 ll~--~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 181 LLI--QPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred HHc--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 743 343 344555555544333 566778888877775
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.00014 Score=60.87 Aligned_cols=115 Identities=14% Similarity=0.036 Sum_probs=61.7
Q ss_pred cCChHHHHHHHHHHHhcCCcc---hhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCC--hhhHHHHHHHHHHcCCHHH
Q 007461 165 ARKFKIANTLLQVFITDGEIA---LLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLD--SGCYCQIMEAYYKIGDSEK 239 (603)
Q Consensus 165 ~~~~~~a~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~g~~~~ 239 (603)
.++...+...++.+....+.+ ..+.-.+...+...|++++|...|+.+......|+ ......+...+...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 455555555566655554433 23333444555666666666666666665542221 1233345566666666666
Q ss_pred HHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccCCHHHHHHHHHH
Q 007461 240 VAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRD 284 (603)
Q Consensus 240 a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 284 (603)
|...++...... +....+....+.|.+.|++++|...|+.
T Consensus 104 Al~~L~~~~~~~-----~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 104 ALATLQQIPDEA-----FKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHhccCcc-----hHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 666665432221 1234455566666666666666666654
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.00013 Score=70.54 Aligned_cols=127 Identities=11% Similarity=-0.029 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 007461 153 HTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYY 232 (603)
Q Consensus 153 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 232 (603)
..-..|+..+...++++.|+.+|+++.+..+ .....+++.+...++..+|++++++.++... -+...+..-...+.
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~p---ev~~~LA~v~l~~~~E~~AI~ll~~aL~~~p-~d~~LL~~Qa~fLl 245 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRERDP---EVAVLLARVYLLMNEEVEAIRLLNEALKENP-QDSELLNLQAEFLL 245 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhcCC---cHHHHHHHHHHhcCcHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHH
Confidence 3344455556666777777777777766542 2344566666666777777777777665422 25555666666677
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 007461 233 KIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKE 287 (603)
Q Consensus 233 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 287 (603)
+.++.+.|.++.+++....+.. -.+|..|..+|.+.|+++.|+-.++.+.-
T Consensus 246 ~k~~~~lAL~iAk~av~lsP~~----f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 246 SKKKYELALEIAKKAVELSPSE----FETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred hcCCHHHHHHHHHHHHHhCchh----HHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 7777777777777776554432 34677777777777777777777776653
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.00036 Score=67.58 Aligned_cols=122 Identities=11% Similarity=0.128 Sum_probs=84.9
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 007461 438 SSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNRA 517 (603)
Q Consensus 438 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 517 (603)
..|+..+...++++.|.++|+++.+. .|+. ...+++.+...++-.+|.+++++.++.. +-+...+..-...|.+.
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~--~pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k 247 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRER--DPEV--AVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSK 247 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhc--CCcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhc
Confidence 34445555677888888888888775 3543 3446677777777778888888777542 22455566666667778
Q ss_pred CCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 007461 518 REFDMCVKFYNEFRMNGGVI-DRAIAGIMVGVFSKLSQIEELVKLLQDMK 566 (603)
Q Consensus 518 g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 566 (603)
++++.|+.+.+++... .| +..+|..|..+|.+.|++++|+-.++.+.
T Consensus 248 ~~~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 248 KKYELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred CCHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 8888888888888775 33 44578888888888888888888777664
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.05 E-value=7.1e-06 Score=49.18 Aligned_cols=33 Identities=48% Similarity=0.761 Sum_probs=28.6
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCC
Q 007461 261 MYKILCDSLGKSGRAFEALKFFRDMKEKGILED 293 (603)
Q Consensus 261 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 293 (603)
+||.+|.+|++.|++++|.++|++|.+.|++||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 588888888888888888888888888888887
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.0067 Score=53.32 Aligned_cols=162 Identities=14% Similarity=0.172 Sum_probs=114.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 007461 332 CLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINAYCR 411 (603)
Q Consensus 332 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 411 (603)
+-.++-+....|+.+.|...++++..+-+. +..+-..-..-+-..|++++|+++++.+.+.+ +.|.+++..-+...-.
T Consensus 55 ~EqV~IAAld~~~~~lAq~C~~~L~~~fp~-S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka 132 (289)
T KOG3060|consen 55 YEQVFIAALDTGRDDLAQKCINQLRDRFPG-SKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKA 132 (289)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHH
Confidence 334455556667777777777776665422 22222222233455788888888888888776 5667777777777777
Q ss_pred cCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHHhcC---CHHH
Q 007461 412 IALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEP-NVWIYNSLMDMHGRAK---NLRQ 487 (603)
Q Consensus 412 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g---~~~~ 487 (603)
.|+.-+|++-+....+. +..|...|.-+...|...|++++|.-.++++.-. .| +...+..+...+...| +...
T Consensus 133 ~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~--~P~n~l~f~rlae~~Yt~gg~eN~~~ 209 (289)
T KOG3060|consen 133 QGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLI--QPFNPLYFQRLAEVLYTQGGAENLEL 209 (289)
T ss_pred cCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHHhhHHHHHH
Confidence 78878888888888776 5788999999999999999999999999999864 44 4445555555554444 5667
Q ss_pred HHHHHHHHHhC
Q 007461 488 VEKLWKEMERR 498 (603)
Q Consensus 488 a~~~~~~m~~~ 498 (603)
+.+.|.+.++.
T Consensus 210 arkyy~~alkl 220 (289)
T KOG3060|consen 210 ARKYYERALKL 220 (289)
T ss_pred HHHHHHHHHHh
Confidence 88888888855
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.00045 Score=57.73 Aligned_cols=115 Identities=7% Similarity=0.054 Sum_probs=53.3
Q ss_pred cCCHHHHHHHHHHHHHcCCCCC---HhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCCHH
Q 007461 447 TGRIRDAMWLVAKMKAKGCEPN---VWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDK--VSYTTVISAYNRAREFD 521 (603)
Q Consensus 447 ~g~~~~A~~~~~~m~~~~~~p~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~--~~~~~li~~~~~~g~~~ 521 (603)
.++...+...++.+.+.. +.+ ....-.+...+...|++++|...|+........|+. .....|...+...|+++
T Consensus 24 ~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d 102 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYD 102 (145)
T ss_pred CCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 455555555555555431 111 111222334455555556666555555544311211 12333444555555666
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 007461 522 MCVKFYNEFRMNGGVIDRAIAGIMVGVFSKLSQIEELVKLLQD 564 (603)
Q Consensus 522 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 564 (603)
+|+..++..... ......+....++|.+.|++++|...|++
T Consensus 103 ~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 103 EALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 665555442221 12233444555555566666666555554
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.029 Score=58.34 Aligned_cols=488 Identities=12% Similarity=0.037 Sum_probs=267.7
Q ss_pred cCCCChHHHHHHHHHHhhCCCCCCCHHhHHHHHHH--HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChH
Q 007461 92 KDPQTQELAYDYYNEAKKLPEFRPEKSTLKLLIRY--LVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFK 169 (603)
Q Consensus 92 ~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 169 (603)
..+++.. |+.....+.+.. |+. .|..++.+ +.+.|+.++|..+++.....+ ..|..|...+-..|.+.++.+
T Consensus 21 d~~qfkk-al~~~~kllkk~---Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~-~~D~~tLq~l~~~y~d~~~~d 94 (932)
T KOG2053|consen 21 DSSQFKK-ALAKLGKLLKKH---PNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLK-GTDDLTLQFLQNVYRDLGKLD 94 (932)
T ss_pred hhHHHHH-HHHHHHHHHHHC---CCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCC-CCchHHHHHHHHHHHHHhhhh
Confidence 3445544 888888777653 332 23333333 457888889998888776655 337888888888898999999
Q ss_pred HHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcC----------CHHH
Q 007461 170 IANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIG----------DSEK 239 (603)
Q Consensus 170 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g----------~~~~ 239 (603)
+|..+++.+.+..|. ..-...+..+|.+.+++.+-.+.--+|-+. ++-++..+=++++.+.... -..-
T Consensus 95 ~~~~~Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~L 172 (932)
T KOG2053|consen 95 EAVHLYERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLAL 172 (932)
T ss_pred HHHHHHHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHH
Confidence 999999998887665 777777788888887776544443333332 2224444444555444321 1233
Q ss_pred HHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccCCHHHHHHHH-HHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 007461 240 VAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFF-RDMKEKGILEDPSIYASLICSFASITEVKLAEELFK 318 (603)
Q Consensus 240 a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~-~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 318 (603)
|.+.++.+.+.+. .-. +..-...-...+...|++++|++++ ....+.-..-+...-+.-+..+...+++.+..++..
T Consensus 173 A~~m~~~~l~~~g-k~~-s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~ 250 (932)
T KOG2053|consen 173 AEKMVQKLLEKKG-KIE-SEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSS 250 (932)
T ss_pred HHHHHHHHhccCC-ccc-hHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHH
Confidence 5555666655541 111 1111222233445567788888888 333333222344444556666777788888888888
Q ss_pred HHHHcCCCCCHHHHHHHHHHH----------------HHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHH---hcCC
Q 007461 319 EAEEKGMLRDPEVCLKLVLMY----------------IEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFS---KRRG 379 (603)
Q Consensus 319 ~~~~~~~~~~~~~~~~l~~~~----------------~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~---~~~~ 379 (603)
++...|.. | |...++.+ ...+..+...+...+...... ...|-+-+.... .-|+
T Consensus 251 ~Ll~k~~D-d---y~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~~---Rgp~LA~lel~kr~~~~gd 323 (932)
T KOG2053|consen 251 RLLEKGND-D---YKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSKS---RGPYLARLELDKRYKLIGD 323 (932)
T ss_pred HHHHhCCc-c---hHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhcccc---cCcHHHHHHHHHHhcccCC
Confidence 87777632 2 22222211 112222332222222222111 111222222222 2355
Q ss_pred HHHHHHHH------------------------------HHHHHcCCCCCHH-------HHHHHHHHHHhcCC-----hHH
Q 007461 380 YWAAVKVY------------------------------EQLISQGCIPGQV-------TYASIINAYCRIAL-----YSK 417 (603)
Q Consensus 380 ~~~a~~~~------------------------------~~m~~~g~~p~~~-------~~~~ll~~~~~~g~-----~~~ 417 (603)
.++++..| ...... .++.. -+...+......|. .+.
T Consensus 324 ~ee~~~~y~~kfg~kpcc~~Dl~~yl~~l~~~q~~~l~~~l~~~--~~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad~ 401 (932)
T KOG2053|consen 324 SEEMLSYYFKKFGDKPCCAIDLNHYLGHLNIDQLKSLMSKLVLA--DDDSSGDEKVLQQHLCVLLLLRLLGLYEKLPADS 401 (932)
T ss_pred hHHHHHHHHHHhCCCcHhHhhHHHhhccCCHHHHHHHHHHhhcc--CCcchhhHHHHHHHHHHHHHHHHhhccccCChHH
Confidence 55544332 221111 11111 01122222222232 233
Q ss_pred HHHHHHHHH---HcCC------CcCHh---------hHHHHHHHHHccCCHH---HHHHHHHHHHHcCCCCCHhHHHHHH
Q 007461 418 AEKVFIEMQ---QKGF------DKCVV---------AYSSMVAMYGKTGRIR---DAMWLVAKMKAKGCEPNVWIYNSLM 476 (603)
Q Consensus 418 a~~~~~~~~---~~~~------~~~~~---------~~~~li~~~~~~g~~~---~A~~~~~~m~~~~~~p~~~~~~~li 476 (603)
-..++.+.. +.|. -|+.. +-+.|++.+-+.++.. +|+-+++..... -+.|..+--.+|
T Consensus 402 i~a~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~-s~hnf~~KLlLi 480 (932)
T KOG2053|consen 402 ILAYVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTK-SPHNFQTKLLLI 480 (932)
T ss_pred HHHHHHHHHHHHhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhc-CCccHHHHHHHH
Confidence 334443332 2231 12222 3456778888888766 455555555543 133445556778
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHH
Q 007461 477 DMHGRAKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNRAREFDMCVKFYNEFRMNGGVIDRAIAGIMVGVFSKLSQIE 556 (603)
Q Consensus 477 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 556 (603)
+.|.-.|-+..|.++|+.+--..++.|...|.. ..-+...|++..+...++...+---..-..+-. +|..-.+.|.+.
T Consensus 481 riY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~~-~~~~~t~g~~~~~s~~~~~~lkfy~~~~kE~~e-yI~~AYr~g~yS 558 (932)
T KOG2053|consen 481 RIYSYLGAFPDAYELYKTLDIKNIQTDTLGHLI-FRRAETSGRSSFASNTFNEHLKFYDSSLKETPE-YIALAYRRGAYS 558 (932)
T ss_pred HHHHHhcCChhHHHHHHhcchHHhhhccchHHH-HHHHHhcccchhHHHHHHHHHHHHhhhhhhhHH-HHHHHHHcCchh
Confidence 999999999999999999966667777665533 345567789999999998776532111122323 333334667777
Q ss_pred HHHHHH---HHHHhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHhhcc
Q 007461 557 ELVKLL---QDMKSEGTKLDERLYHSAMNALRDAGLQMQAQWLQQNFE 601 (603)
Q Consensus 557 ~A~~~~---~~m~~~g~~~~~~~~~~ll~a~~~~g~~~~a~~~~~~~~ 601 (603)
+..++. +++...-..--..+=+..++.+...+..++-...++.++
T Consensus 559 kI~em~~fr~rL~~S~q~~a~~VE~~~l~ll~~~~~~~q~~~~~~~~~ 606 (932)
T KOG2053|consen 559 KIPEMLAFRDRLMHSLQKWACRVENLQLSLLCNADRGTQLLKLLESMK 606 (932)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHhccc
Confidence 666554 334332222333445566777788899888888888765
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.00 E-value=1e-05 Score=48.49 Aligned_cols=31 Identities=32% Similarity=0.635 Sum_probs=13.3
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHcCCCC
Q 007461 437 YSSMVAMYGKTGRIRDAMWLVAKMKAKGCEP 467 (603)
Q Consensus 437 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 467 (603)
|+.+|.+|++.|++++|.++|++|.+.|+.|
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p 33 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEMLERGIEP 33 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC
Confidence 4444444444444444444444444444444
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.99 E-value=1.1e-05 Score=47.90 Aligned_cols=33 Identities=36% Similarity=0.615 Sum_probs=25.2
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCC
Q 007461 260 HMYKILCDSLGKSGRAFEALKFFRDMKEKGILE 292 (603)
Q Consensus 260 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 292 (603)
.+|+.++.+|.+.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 367777777777777777777777777777766
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.011 Score=59.21 Aligned_cols=120 Identities=13% Similarity=0.108 Sum_probs=58.4
Q ss_pred CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCC--------CCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCc
Q 007461 114 RPEKSTLKLLIRYLVQSKKWDSIVSLSEDFKIY-NVL--------PDAHTCSRLVASCVRARKFKIANTLLQVFITDGEI 184 (603)
Q Consensus 114 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~--------~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 184 (603)
.|.+..|..+.......-.++.|...|-+.... |+. .+...-.+=+.+| -|++++|++++-.+.+.
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~--~g~feeaek~yld~drr--- 763 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAF--YGEFEEAEKLYLDADRR--- 763 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhh--hcchhHhhhhhhccchh---
Confidence 577888888887777666777777766655432 111 0111111222222 36777777776655443
Q ss_pred chhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCC--CCChhhHHHHHHHHHHcCCHHHHHHHH
Q 007461 185 ALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGI--VLDSGCYCQIMEAYYKIGDSEKVAALF 244 (603)
Q Consensus 185 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~--~p~~~~~~~ll~~~~~~g~~~~a~~~~ 244 (603)
...+..+.+.|++-+..++++.-- .+. ..-...++.+.+.++....+++|.+.|
T Consensus 764 -----DLAielr~klgDwfrV~qL~r~g~-~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY 819 (1189)
T KOG2041|consen 764 -----DLAIELRKKLGDWFRVYQLIRNGG-SDDDDEGKEDAFRNIGETFAEMMEWEEAAKYY 819 (1189)
T ss_pred -----hhhHHHHHhhhhHHHHHHHHHccC-CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 233444555555555555443210 000 001124444555555444555554444
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.96 E-value=1.5e-05 Score=47.36 Aligned_cols=32 Identities=28% Similarity=0.548 Sum_probs=14.0
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHcCCCC
Q 007461 436 AYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEP 467 (603)
Q Consensus 436 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 467 (603)
+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 34444444444444444444444444444433
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.0089 Score=59.96 Aligned_cols=208 Identities=13% Similarity=0.080 Sum_probs=112.1
Q ss_pred CCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcc-hhhHHH-----H--HhhhhhcCcHHHHHHHHHHHHhCCCCCC
Q 007461 149 LPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIA-LLAFNS-----A--MGGYNKLHMYYSTILVYEKMKSAGIVLD 220 (603)
Q Consensus 149 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~-----l--~~~~~~~~~~~~a~~~~~~m~~~~~~p~ 220 (603)
.|.+..|..+.......-.++.|+..|-+........ +.-... + ...-.--|++++|.+++-+|-+++
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrD---- 764 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRD---- 764 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhh----
Confidence 5788888887776665556666666655543322110 000000 0 111122467777777776665543
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 007461 221 SGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEKGILEDPSIYASL 300 (603)
Q Consensus 221 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 300 (603)
.-+..+.+.||+-...++++.-.. -..+..-..+|+.+...+.....+++|.+.|..-... ...
T Consensus 765 -----LAielr~klgDwfrV~qL~r~g~~--d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~---------e~~ 828 (1189)
T KOG2041|consen 765 -----LAIELRKKLGDWFRVYQLIRNGGS--DDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT---------ENQ 828 (1189)
T ss_pred -----hhHHHHHhhhhHHHHHHHHHccCC--CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch---------HhH
Confidence 235566677777776666643111 1111112346777777777777777777776543211 123
Q ss_pred HHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCH
Q 007461 301 ICSFASITEVKLAEELFKEAEEKGMLRDPEVCLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRRGY 380 (603)
Q Consensus 301 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 380 (603)
+.++.+..++++-+.+... ++-+....-.+.+++.+.|.-++|.+.|-+... | ..-+..|...+++
T Consensus 829 ~ecly~le~f~~LE~la~~-----Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~----p-----kaAv~tCv~LnQW 894 (1189)
T KOG2041|consen 829 IECLYRLELFGELEVLART-----LPEDSELLPVMADMFTSVGMCDQAVEAYLRRSL----P-----KAAVHTCVELNQW 894 (1189)
T ss_pred HHHHHHHHhhhhHHHHHHh-----cCcccchHHHHHHHHHhhchHHHHHHHHHhccC----c-----HHHHHHHHHHHHH
Confidence 4444444444443333322 233555666777778888887777766544321 1 1345666777777
Q ss_pred HHHHHHHHHH
Q 007461 381 WAAVKVYEQL 390 (603)
Q Consensus 381 ~~a~~~~~~m 390 (603)
.+|+++-+..
T Consensus 895 ~~avelaq~~ 904 (1189)
T KOG2041|consen 895 GEAVELAQRF 904 (1189)
T ss_pred HHHHHHHHhc
Confidence 7777766553
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00028 Score=68.62 Aligned_cols=122 Identities=10% Similarity=-0.011 Sum_probs=75.9
Q ss_pred CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHH
Q 007461 361 KISDCISCAIVNGFSKRRGYWAAVKVYEQLISQ--GCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYS 438 (603)
Q Consensus 361 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 438 (603)
+.+......+++.+....+.+++..++.+.... ....-..|..++++.|.+.|..+.+..+++.=...|+-||..+++
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 345555666666666666666666666666553 111222344566777777777777777776666667777777777
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhc
Q 007461 439 SMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRA 482 (603)
Q Consensus 439 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 482 (603)
.|++.+.+.|++..|.++...|...+...+..|+...+.+|.+.
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 77777777777777777766666655555555555555555444
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00041 Score=52.86 Aligned_cols=92 Identities=17% Similarity=0.091 Sum_probs=43.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcC
Q 007461 121 KLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLH 200 (603)
Q Consensus 121 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 200 (603)
..+...+...|++++|..+++...+.. +.+...+..+...+...++++.|.+.++......+.+..++..+...+...|
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 4 LNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 334444455555555555555554432 2223444444444444555555555555544444444444444444444444
Q ss_pred cHHHHHHHHHHHH
Q 007461 201 MYYSTILVYEKMK 213 (603)
Q Consensus 201 ~~~~a~~~~~~m~ 213 (603)
++++|...+....
T Consensus 83 ~~~~a~~~~~~~~ 95 (100)
T cd00189 83 KYEEALEAYEKAL 95 (100)
T ss_pred hHHHHHHHHHHHH
Confidence 4444444444443
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.0006 Score=66.39 Aligned_cols=122 Identities=14% Similarity=0.121 Sum_probs=76.9
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHH
Q 007461 291 LEDPSIYASLICSFASITEVKLAEELFKEAEEKG--MLRDPEVCLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCISC 368 (603)
Q Consensus 291 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 368 (603)
......+..+++.+....+++.+..++-...... ...-+.+..++|+.|.+.|..++++.++..=...|+-||..++|
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 3345555666666666666666666666665542 22223444567777777777777777776666667777777777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 007461 369 AIVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINAYCRI 412 (603)
Q Consensus 369 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 412 (603)
.|+..+.+.|++..|.++...|...+...+..|+...+.+|.+.
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 77777777777777777776666665555666666666665554
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00056 Score=52.04 Aligned_cols=91 Identities=19% Similarity=0.196 Sum_probs=47.7
Q ss_pred HHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCC
Q 007461 157 RLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGD 236 (603)
Q Consensus 157 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~ 236 (603)
.+...+...|++++|...++.+.+..+.+..++..+...+...+++++|.+.++...+.... +..++..+...+...|+
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 83 (100)
T cd00189 5 NLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPD-NAKAYYNLGLAYYKLGK 83 (100)
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-chhHHHHHHHHHHHHHh
Confidence 34444455556666666666555554444455555555555555555555555555543221 23344455555555555
Q ss_pred HHHHHHHHHHHH
Q 007461 237 SEKVAALFLECK 248 (603)
Q Consensus 237 ~~~a~~~~~~~~ 248 (603)
.+.|...+....
T Consensus 84 ~~~a~~~~~~~~ 95 (100)
T cd00189 84 YEEALEAYEKAL 95 (100)
T ss_pred HHHHHHHHHHHH
Confidence 555555555443
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00078 Score=51.06 Aligned_cols=71 Identities=17% Similarity=0.300 Sum_probs=33.2
Q ss_pred HccCCHHHHHHHHHHHHHcCC-CCCHhHHHHHHHHHHhc--------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 007461 445 GKTGRIRDAMWLVAKMKAKGC-EPNVWIYNSLMDMHGRA--------KNLRQVEKLWKEMERRKVTPDKVSYTTVISAYN 515 (603)
Q Consensus 445 ~~~g~~~~A~~~~~~m~~~~~-~p~~~~~~~li~~~~~~--------g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 515 (603)
...|++.....+|+.++..|+ .|++.+|+.++.+.++. ++....+.+|+.|+..+++|+..+|+.++..+.
T Consensus 36 ~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl~~Ll 115 (120)
T PF08579_consen 36 FENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVLGSLL 115 (120)
T ss_pred HhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHH
Confidence 333444444444444444444 44444444444443322 122334445555555555555555555555443
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.67 E-value=5.9e-05 Score=43.57 Aligned_cols=29 Identities=38% Similarity=0.602 Sum_probs=20.3
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHCC
Q 007461 261 MYKILCDSLGKSGRAFEALKFFRDMKEKG 289 (603)
Q Consensus 261 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g 289 (603)
+||.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 46777777777777777777777776655
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.0017 Score=52.13 Aligned_cols=97 Identities=7% Similarity=-0.077 Sum_probs=53.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCc---chhhHHHHH
Q 007461 119 TLKLLIRYLVQSKKWDSIVSLSEDFKIYNVL--PDAHTCSRLVASCVRARKFKIANTLLQVFITDGEI---ALLAFNSAM 193 (603)
Q Consensus 119 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~l~ 193 (603)
++..++..+.+.|++++|...++.+...... .....+..+...+.+.|+++.|...++.+....+. ...++..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 4455555666666666666666666554310 01234444555566666666666666666554332 234455555
Q ss_pred hhhhhcCcHHHHHHHHHHHHhC
Q 007461 194 GGYNKLHMYYSTILVYEKMKSA 215 (603)
Q Consensus 194 ~~~~~~~~~~~a~~~~~~m~~~ 215 (603)
..+...|+.++|...++++.+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHH
Confidence 5555666666666666665554
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00087 Score=50.79 Aligned_cols=78 Identities=15% Similarity=0.304 Sum_probs=52.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHccC--------CHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 007461 510 VISAYNRAREFDMCVKFYNEFRMNGG-VIDRAIAGIMVGVFSKLS--------QIEELVKLLQDMKSEGTKLDERLYHSA 580 (603)
Q Consensus 510 li~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g--------~~~~A~~~~~~m~~~g~~~~~~~~~~l 580 (603)
.|..|...+++...-.+|+.+++.|+ .|+..+|+.++.+..+.. +.-+.+.+++.|+..+++|+..||+.+
T Consensus 31 ~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYniv 110 (120)
T PF08579_consen 31 NINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIV 110 (120)
T ss_pred HHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHH
Confidence 34445555777777777777777777 567777777666665432 234567777888887888888888888
Q ss_pred HHHHHhc
Q 007461 581 MNALRDA 587 (603)
Q Consensus 581 l~a~~~~ 587 (603)
+.++.+.
T Consensus 111 l~~Llkg 117 (120)
T PF08579_consen 111 LGSLLKG 117 (120)
T ss_pred HHHHHHh
Confidence 8777653
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.65 E-value=7e-05 Score=43.24 Aligned_cols=28 Identities=25% Similarity=0.584 Sum_probs=13.0
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 007461 436 AYSSMVAMYGKTGRIRDAMWLVAKMKAK 463 (603)
Q Consensus 436 ~~~~li~~~~~~g~~~~A~~~~~~m~~~ 463 (603)
+|+.++++|++.|++++|.++|++|.+.
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~ 29 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRER 29 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHC
Confidence 3444444444444444444444444443
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.001 Score=62.30 Aligned_cols=132 Identities=13% Similarity=0.061 Sum_probs=65.2
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhh-cCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 007461 154 TCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNK-LHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYY 232 (603)
Q Consensus 154 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 232 (603)
+|..+++.+.+.+..+.|+.+|.+....+..+..+|-.....-.. .++.+.|..+|+...+. +..+...|..-++.+.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l~ 81 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFLI 81 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHH
Confidence 455555555555555555556555554433333444333333222 34444466666655543 3334555555556666
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 007461 233 KIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKE 287 (603)
Q Consensus 233 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 287 (603)
+.|+.+.|+.+|++....- .........|...++.=.+.|+.+.+.++.+++.+
T Consensus 82 ~~~d~~~aR~lfer~i~~l-~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 82 KLNDINNARALFERAISSL-PKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HTT-HHHHHHHHHHHCCTS-SCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HhCcHHHHHHHHHHHHHhc-CchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6666666666666555431 11100223566666666666666666666666554
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.0034 Score=54.25 Aligned_cols=91 Identities=9% Similarity=-0.121 Sum_probs=70.2
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHH
Q 007461 116 EKSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPD--AHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAM 193 (603)
Q Consensus 116 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 193 (603)
....+..+...+...|++++|...|++..+.+..+. ...+..+...+.+.|++++|...+++.....+.+...+..+.
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 113 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIA 113 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence 344577788888889999999999998886542222 357777888888999999999999998888777777888888
Q ss_pred hhhhhcCcHHHHH
Q 007461 194 GGYNKLHMYYSTI 206 (603)
Q Consensus 194 ~~~~~~~~~~~a~ 206 (603)
..+...|+...+.
T Consensus 114 ~~~~~~g~~~~a~ 126 (172)
T PRK02603 114 VIYHKRGEKAEEA 126 (172)
T ss_pred HHHHHcCChHhHh
Confidence 8887777654443
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.0017 Score=63.20 Aligned_cols=91 Identities=14% Similarity=0.013 Sum_probs=64.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHH
Q 007461 124 IRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYY 203 (603)
Q Consensus 124 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 203 (603)
...+...|++++|+.+|+++++.+ +.+...|..+..+|...|++++|+..++.+....+.+..+|..+..+|...|+++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHH
Confidence 445556677777777777777665 4456666666677777777777777777777776667777777777777777777
Q ss_pred HHHHHHHHHHhC
Q 007461 204 STILVYEKMKSA 215 (603)
Q Consensus 204 ~a~~~~~~m~~~ 215 (603)
+|+..|++.++.
T Consensus 88 eA~~~~~~al~l 99 (356)
T PLN03088 88 TAKAALEKGASL 99 (356)
T ss_pred HHHHHHHHHHHh
Confidence 777777777664
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.051 Score=49.65 Aligned_cols=55 Identities=16% Similarity=0.105 Sum_probs=25.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhC--CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 007461 336 VLMYIEEGLVEKTLDVVESMKNA--KLKISDCISCAIVNGFSKRRGYWAAVKVYEQL 390 (603)
Q Consensus 336 ~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 390 (603)
...|.+.|.+..|..-++.+.+. +.+........++.+|...|..++|..+...+
T Consensus 182 a~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 182 AEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 34445555555555555554433 11222233444555555555555555544443
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.0083 Score=50.00 Aligned_cols=101 Identities=9% Similarity=-0.009 Sum_probs=45.1
Q ss_pred CCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCC-cchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCC-CChhhHHHH
Q 007461 150 PDAHTCSRLVASCVRARKFKIANTLLQVFITDGE-IALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIV-LDSGCYCQI 227 (603)
Q Consensus 150 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-p~~~~~~~l 227 (603)
|+..-.-.|..++.+.|+..+|...|++.....- .|......+.++....+++..|...++.+.+.... -++.+...+
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~ 166 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLF 166 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHH
Confidence 4444444444444444555555555444443222 34444444444444455555555555544443210 011233344
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhC
Q 007461 228 MEAYYKIGDSEKVAALFLECKSR 250 (603)
Q Consensus 228 l~~~~~~g~~~~a~~~~~~~~~~ 250 (603)
.+.+...|..+.|+.-|+.....
T Consensus 167 aR~laa~g~~a~Aesafe~a~~~ 189 (251)
T COG4700 167 ARTLAAQGKYADAESAFEVAISY 189 (251)
T ss_pred HHHHHhcCCchhHHHHHHHHHHh
Confidence 44555555555555555554443
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0015 Score=56.22 Aligned_cols=82 Identities=7% Similarity=-0.137 Sum_probs=61.3
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHH
Q 007461 116 EKSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLP--DAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAM 193 (603)
Q Consensus 116 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 193 (603)
....|..+...+...|++++|+..++........+ ...++..+...+...|++++|+..++......+....+++.+.
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la 113 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHH
Confidence 35567777788888899999999999887654222 2347777888888889999999888888877666666666666
Q ss_pred hhhh
Q 007461 194 GGYN 197 (603)
Q Consensus 194 ~~~~ 197 (603)
..+.
T Consensus 114 ~i~~ 117 (168)
T CHL00033 114 VICH 117 (168)
T ss_pred HHHH
Confidence 6666
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.002 Score=51.63 Aligned_cols=97 Identities=19% Similarity=0.106 Sum_probs=40.8
Q ss_pred HHHhhhhhcCcHHHHHHHHHHHHhCCCC--CChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHH
Q 007461 191 SAMGGYNKLHMYYSTILVYEKMKSAGIV--LDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDS 268 (603)
Q Consensus 191 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~--p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~ 268 (603)
.++..+.+.|++++|.+.|+.+.+.... .....+..+...+.+.|+++.|...|+.+....+... ....++..+...
T Consensus 7 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~-~~~~~~~~~~~~ 85 (119)
T TIGR02795 7 DAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSP-KAPDALLKLGMS 85 (119)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCC-cccHHHHHHHHH
Confidence 3333444444444444444444432110 0112333344444555555555555554443322110 011234444445
Q ss_pred HhccCCHHHHHHHHHHHHHC
Q 007461 269 LGKSGRAFEALKFFRDMKEK 288 (603)
Q Consensus 269 ~~~~g~~~~A~~~~~~m~~~ 288 (603)
+.+.|++++|.+.++++.+.
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 86 LQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHhCChHHHHHHHHHHHHH
Confidence 55555555555555555444
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.0024 Score=52.47 Aligned_cols=88 Identities=10% Similarity=0.037 Sum_probs=58.4
Q ss_pred HHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCHHHHH
Q 007461 162 CVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVA 241 (603)
Q Consensus 162 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~ 241 (603)
+...|++++|.++|+.+...++.+..-|..|...+-..|++++|+..|......++. |+..+-.+..++...|+.+.|+
T Consensus 45 ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d-dp~~~~~ag~c~L~lG~~~~A~ 123 (157)
T PRK15363 45 LMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID-APQAPWAAAECYLACDNVCYAI 123 (157)
T ss_pred HHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHHHHHcCCHHHHH
Confidence 445667777777777766666666666667777777777777777777766665542 5666666667777777777777
Q ss_pred HHHHHHHhC
Q 007461 242 ALFLECKSR 250 (603)
Q Consensus 242 ~~~~~~~~~ 250 (603)
+-|+.....
T Consensus 124 ~aF~~Ai~~ 132 (157)
T PRK15363 124 KALKAVVRI 132 (157)
T ss_pred HHHHHHHHH
Confidence 766655443
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00015 Score=53.93 Aligned_cols=79 Identities=14% Similarity=0.137 Sum_probs=36.0
Q ss_pred CCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCcHHHHHH
Q 007461 518 REFDMCVKFYNEFRMNGGV-IDRAIAGIMVGVFSKLSQIEELVKLLQDMKSEGTKLDE-RLYHSAMNALRDAGLQMQAQW 595 (603)
Q Consensus 518 g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~-~~~~~ll~a~~~~g~~~~a~~ 595 (603)
|+++.|+.+++++.+.... ++...+-.+..+|.+.|++++|++++++ .+ ..++. .....+..+|.+.|++++|++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~--~~~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LK--LDPSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HT--HHHCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hC--CCCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 4555555555555554331 1233333355555555555555555555 11 11221 223333445555555555555
Q ss_pred HHhh
Q 007461 596 LQQN 599 (603)
Q Consensus 596 ~~~~ 599 (603)
++++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 5543
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.0025 Score=59.75 Aligned_cols=145 Identities=17% Similarity=0.151 Sum_probs=89.7
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHH
Q 007461 365 CISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINA-YCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAM 443 (603)
Q Consensus 365 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~-~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 443 (603)
.+|..+++..-+.+..+.|..+|.+..+.+ ..+...|...... +...++.+.|..+|+...+. ++.+...|...++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 357777777777777888888888877443 2223333333333 23346666688888877765 46667777777777
Q ss_pred HHccCCHHHHHHHHHHHHHcCCCCCH---hHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 007461 444 YGKTGRIRDAMWLVAKMKAKGCEPNV---WIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDKVSYTTVISAY 514 (603)
Q Consensus 444 ~~~~g~~~~A~~~~~~m~~~~~~p~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 514 (603)
+.+.|+.+.|..+|++.... +.++. ..|...+.--.+.|+.+.+.++.+++.+. -|+...+..++.-|
T Consensus 80 l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~--~~~~~~~~~f~~ry 150 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL--FPEDNSLELFSDRY 150 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH--TTTS-HHHHHHCCT
T ss_pred HHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--hhhhhHHHHHHHHh
Confidence 77888888888888877765 22222 47777777777778888888877777753 34433444444333
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.057 Score=50.88 Aligned_cols=56 Identities=14% Similarity=0.251 Sum_probs=23.6
Q ss_pred HHHHhcc-CCHHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 007461 266 CDSLGKS-GRAFEALKFFRDMKEK----GILED--PSIYASLICSFASITEVKLAEELFKEAEE 322 (603)
Q Consensus 266 i~~~~~~-g~~~~A~~~~~~m~~~----g~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 322 (603)
...|... |++++|++.|++..+. | .+. ...+..+...+.+.|++++|.++|+++..
T Consensus 121 A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~ 183 (282)
T PF14938_consen 121 AEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAK 183 (282)
T ss_dssp HHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3344444 5555555555554321 1 110 12233444444555555555555555544
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.003 Score=54.38 Aligned_cols=87 Identities=20% Similarity=0.358 Sum_probs=50.1
Q ss_pred CHhhHHHHHHHHHc-----cCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhc----------------CCHHHHHHH
Q 007461 433 CVVAYSSMVAMYGK-----TGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRA----------------KNLRQVEKL 491 (603)
Q Consensus 433 ~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~----------------g~~~~a~~~ 491 (603)
+..+|..+++.|.+ .|.++=....+..|.+-|+.-|..+|+.|++.+-+. .+-+-|+++
T Consensus 46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~l 125 (228)
T PF06239_consen 46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAIDL 125 (228)
T ss_pred cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHHH
Confidence 34444444444432 234444444444555555555555555555544331 234567788
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 007461 492 WKEMERRKVTPDKVSYTTVISAYNRARE 519 (603)
Q Consensus 492 ~~~m~~~~~~p~~~~~~~li~~~~~~g~ 519 (603)
+++|...|+-||..++..++..+.+.+.
T Consensus 126 L~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 126 LEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 8888888888888888888888766543
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.0022 Score=52.59 Aligned_cols=98 Identities=16% Similarity=0.010 Sum_probs=85.8
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhh
Q 007461 117 KSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGY 196 (603)
Q Consensus 117 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 196 (603)
....-.+...+...|++++|.++|+.+...+ +-+..-|-.|...+-..|++++|+..|......++.++..+-.+..++
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~ 113 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 4455667777889999999999999998876 456667777888888899999999999999999999999999999999
Q ss_pred hhcCcHHHHHHHHHHHHhC
Q 007461 197 NKLHMYYSTILVYEKMKSA 215 (603)
Q Consensus 197 ~~~~~~~~a~~~~~~m~~~ 215 (603)
...|+.+.|.+.|+..+..
T Consensus 114 L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 114 LACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 9999999999999987764
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.0089 Score=54.36 Aligned_cols=123 Identities=15% Similarity=0.090 Sum_probs=86.2
Q ss_pred HHHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcC---CHHHHHHHHHHHHh
Q 007461 173 TLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIG---DSEKVAALFLECKS 249 (603)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~ 249 (603)
.-++.-...+|.|...|-.|...|...|+++.|..-|.+..+.. .+|+..+..+..++.... +..++..+|+++..
T Consensus 143 a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~ 221 (287)
T COG4235 143 ARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALA 221 (287)
T ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHh
Confidence 33444455677788888888888888888888888888887753 235666666666655443 45677888888877
Q ss_pred CCCCCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 007461 250 RKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEKGILEDPSIYASLIC 302 (603)
Q Consensus 250 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 302 (603)
.++. ++.+...|...+...|++.+|...|+.|.+. -|....+..+|.
T Consensus 222 ~D~~----~iral~lLA~~afe~g~~~~A~~~Wq~lL~~--lp~~~~rr~~ie 268 (287)
T COG4235 222 LDPA----NIRALSLLAFAAFEQGDYAEAAAAWQMLLDL--LPADDPRRSLIE 268 (287)
T ss_pred cCCc----cHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--CCCCCchHHHHH
Confidence 6654 4567777888888888888888888888876 333333444444
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.0063 Score=52.56 Aligned_cols=89 Identities=10% Similarity=0.084 Sum_probs=54.1
Q ss_pred HhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCC--HhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHH
Q 007461 434 VVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPN--VWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTP-DKVSYTTV 510 (603)
Q Consensus 434 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~l 510 (603)
...+..+...+...|++++|...|++..+....+. ...+..+...+.+.|++++|...+++..+. .| +...+..+
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l 112 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL--NPKQPSALNNI 112 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHH
Confidence 44566666667777777777777777765422221 345666666777777777777777777653 23 33445555
Q ss_pred HHHHHhcCCHHHHH
Q 007461 511 ISAYNRAREFDMCV 524 (603)
Q Consensus 511 i~~~~~~g~~~~a~ 524 (603)
...+...|+...+.
T Consensus 113 g~~~~~~g~~~~a~ 126 (172)
T PRK02603 113 AVIYHKRGEKAEEA 126 (172)
T ss_pred HHHHHHcCChHhHh
Confidence 56666666544444
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.069 Score=50.33 Aligned_cols=123 Identities=15% Similarity=0.195 Sum_probs=57.1
Q ss_pred HHHhc-CChHHHHHHHHHHHHc----CC-CcCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCC-----CHh-HHHHH
Q 007461 408 AYCRI-ALYSKAEKVFIEMQQK----GF-DKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEP-----NVW-IYNSL 475 (603)
Q Consensus 408 ~~~~~-g~~~~a~~~~~~~~~~----~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-----~~~-~~~~l 475 (603)
.|... |++++|.+.|++..+. +- ..-..++..+...+.+.|++++|.++|++........ +.. .|-..
T Consensus 123 ~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a 202 (282)
T PF14938_consen 123 IYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKA 202 (282)
T ss_dssp HHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHH
Confidence 34444 5566666665554332 10 0113345556666777777777777777766532211 111 12222
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCC--CCCC--HHHHHHHHHHHHhc--CCHHHHHHHHHHH
Q 007461 476 MDMHGRAKNLRQVEKLWKEMERRK--VTPD--KVSYTTVISAYNRA--REFDMCVKFYNEF 530 (603)
Q Consensus 476 i~~~~~~g~~~~a~~~~~~m~~~~--~~p~--~~~~~~li~~~~~~--g~~~~a~~~~~~~ 530 (603)
+-++...||+..|.+.+++..... +... ......|+.+|-.. ..++.++.-|+.+
T Consensus 203 ~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~ 263 (282)
T PF14938_consen 203 ILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSI 263 (282)
T ss_dssp HHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTS
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHccc
Confidence 334455667777777777765331 1111 12345555555432 2344444444443
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.002 Score=58.14 Aligned_cols=94 Identities=16% Similarity=0.046 Sum_probs=52.4
Q ss_pred hcCCCChHHHHHHHHHHhhCCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHH
Q 007461 91 LKDPQTQELAYDYYNEAKKLPEFRPEKSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKI 170 (603)
Q Consensus 91 ~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 170 (603)
.+.+++.+ |++.|..+++.. +-|+..|..-..+|.+.|.++.|++=.+..+..+ +....+|..|..+|...|++++
T Consensus 92 m~~~~Y~e-Av~kY~~AI~l~--P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 92 MKNKDYQE-AVDKYTEAIELD--PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHhhhHHH-HHHHHHHHHhcC--CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHHH
Confidence 34444444 666666666542 3344555556666666666666666666555544 3334566666666666666666
Q ss_pred HHHHHHHHHhcCCcchhh
Q 007461 171 ANTLLQVFITDGEIALLA 188 (603)
Q Consensus 171 a~~~~~~~~~~~~~~~~~ 188 (603)
|++.|++.+..+|.+...
T Consensus 168 A~~aykKaLeldP~Ne~~ 185 (304)
T KOG0553|consen 168 AIEAYKKALELDPDNESY 185 (304)
T ss_pred HHHHHHhhhccCCCcHHH
Confidence 666666666555544433
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00044 Score=51.37 Aligned_cols=78 Identities=10% Similarity=0.069 Sum_probs=31.3
Q ss_pred CChHHHHHHHHHHHhcCCc--chhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCHHHHHHH
Q 007461 166 RKFKIANTLLQVFITDGEI--ALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAAL 243 (603)
Q Consensus 166 ~~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~ 243 (603)
|+++.|+.+++++....+. +...+..+..+|.+.|++++|+.+++. .+.+.. +......+..++.+.|++++|+++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~-~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPS-NPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHC-HHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCC-CHHHHHHHHHHHHHhCCHHHHHHH
Confidence 3444444444444443331 223333344444444555555444444 111110 112222334445555555555555
Q ss_pred HH
Q 007461 244 FL 245 (603)
Q Consensus 244 ~~ 245 (603)
|+
T Consensus 81 l~ 82 (84)
T PF12895_consen 81 LE 82 (84)
T ss_dssp HH
T ss_pred Hh
Confidence 44
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.073 Score=53.29 Aligned_cols=55 Identities=4% Similarity=-0.023 Sum_probs=34.4
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007461 469 VWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNRAREFDMCVKFYNEFRM 532 (603)
Q Consensus 469 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 532 (603)
..+...+..-+.+...+..|.++|..|-+. ..++......++|.+|..+-+...+
T Consensus 747 re~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe 801 (1081)
T KOG1538|consen 747 REPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPE 801 (1081)
T ss_pred hhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCcc
Confidence 334444444455666777777777777421 2456666777888888877766543
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.077 Score=48.50 Aligned_cols=55 Identities=15% Similarity=0.062 Sum_probs=26.0
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHc--CCCCCHhHHHHHHHHHHhcCCHHHHHHHHHH
Q 007461 440 MVAMYGKTGRIRDAMWLVAKMKAK--GCEPNVWIYNSLMDMHGRAKNLRQVEKLWKE 494 (603)
Q Consensus 440 li~~~~~~g~~~~A~~~~~~m~~~--~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 494 (603)
+.+.|.+.|.+..|..-++.+.+. +.+........++.+|...|..++|.+....
T Consensus 181 ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~ 237 (243)
T PRK10866 181 VAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKI 237 (243)
T ss_pred HHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 344455555555555555555543 1122233344444555555555555544443
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.16 Score=48.36 Aligned_cols=111 Identities=14% Similarity=0.163 Sum_probs=85.0
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 007461 435 VAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDKVSYTTVISAY 514 (603)
Q Consensus 435 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 514 (603)
.+.+..|.-+...|+...|.++-.+.. .|+..-|...+.+++..+++++-.++... . -.+..|..++.+|
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s----k--KsPIGyepFv~~~ 247 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS----K--KSPIGYEPFVEAC 247 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC----C--CCCCChHHHHHHH
Confidence 345555667778899888888877764 58999999999999999999988876543 1 1347788999999
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 007461 515 NRAREFDMCVKFYNEFRMNGGVIDRAIAGIMVGVFSKLSQIEELVKLLQDM 565 (603)
Q Consensus 515 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 565 (603)
.+.|+..+|..+..++ . +..-+..|.++|++.+|.+.--+.
T Consensus 248 ~~~~~~~eA~~yI~k~-----~-----~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 248 LKYGNKKEASKYIPKI-----P-----DEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred HHCCCHHHHHHHHHhC-----C-----hHHHHHHHHHCCCHHHHHHHHHHc
Confidence 9999999999888772 1 244677788999999998775444
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0043 Score=60.49 Aligned_cols=102 Identities=12% Similarity=0.030 Sum_probs=85.6
Q ss_pred HHHHhcCCCChHHHHHHHHHHhhCCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC
Q 007461 87 LHGMLKDPQTQELAYDYYNEAKKLPEFRPEKSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRAR 166 (603)
Q Consensus 87 l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 166 (603)
...+...+++.+ |+++|+.+++.. +.+...|..+..+|.+.|++++|+..++.+.... +.+...|..+..+|...|
T Consensus 9 a~~a~~~~~~~~-Ai~~~~~Al~~~--P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 9 AKEAFVDDDFAL-AVDLYTQAIDLD--PNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHcCCHHH-HHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhC
Confidence 344556777766 999999999864 5567789999999999999999999999999886 557788999999999999
Q ss_pred ChHHHHHHHHHHHhcCCcchhhHHHH
Q 007461 167 KFKIANTLLQVFITDGEIALLAFNSA 192 (603)
Q Consensus 167 ~~~~a~~~~~~~~~~~~~~~~~~~~l 192 (603)
++++|+..|+......+.+......+
T Consensus 85 ~~~eA~~~~~~al~l~P~~~~~~~~l 110 (356)
T PLN03088 85 EYQTAKAALEKGASLAPGDSRFTKLI 110 (356)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 99999999999999887666655544
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0058 Score=52.57 Aligned_cols=93 Identities=9% Similarity=-0.008 Sum_probs=47.2
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 007461 470 WIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPD--KVSYTTVISAYNRAREFDMCVKFYNEFRMNGGVIDRAIAGIMVG 547 (603)
Q Consensus 470 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 547 (603)
..|..+...+...|++++|+..|++.......|. ..++..+...+...|++++|+..+++....... ....+..+..
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~-~~~~~~~la~ 114 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPF-LPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHH
Confidence 3344445555555666666666666553321111 134555666666666666666666666553211 2233444444
Q ss_pred HHH-------ccCCHHHHHHHHH
Q 007461 548 VFS-------KLSQIEELVKLLQ 563 (603)
Q Consensus 548 ~~~-------~~g~~~~A~~~~~ 563 (603)
.+. +.|++++|...++
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~ 137 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFD 137 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHH
Confidence 444 5666664444444
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.071 Score=53.36 Aligned_cols=40 Identities=20% Similarity=0.204 Sum_probs=28.7
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHH
Q 007461 204 STILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLE 246 (603)
Q Consensus 204 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 246 (603)
+.+.-+++++++|-.|+... +...++-.|.+.+|.++|.+
T Consensus 618 ~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~ 657 (1081)
T KOG1538|consen 618 ELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKR 657 (1081)
T ss_pred HHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHH
Confidence 44445677888888787653 45667778888888888864
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0042 Score=56.08 Aligned_cols=96 Identities=16% Similarity=0.106 Sum_probs=54.2
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHH
Q 007461 127 LVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTI 206 (603)
Q Consensus 127 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 206 (603)
+.+.+++.+|+..|...++.. +.|..-|.--..+|.+.|.++.|++-.+..+..++.-..+|..|..+|...|++++|+
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~ 169 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAI 169 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHH
Confidence 444556666666666665554 3444555555555666666666666666655555555556666666666666666666
Q ss_pred HHHHHHHhCCCCCChhhHH
Q 007461 207 LVYEKMKSAGIVLDSGCYC 225 (603)
Q Consensus 207 ~~~~~m~~~~~~p~~~~~~ 225 (603)
+.|.+.++ +.|+-.+|-
T Consensus 170 ~aykKaLe--ldP~Ne~~K 186 (304)
T KOG0553|consen 170 EAYKKALE--LDPDNESYK 186 (304)
T ss_pred HHHHhhhc--cCCCcHHHH
Confidence 66555554 344444433
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.031 Score=57.14 Aligned_cols=136 Identities=9% Similarity=-0.049 Sum_probs=67.4
Q ss_pred CCCHHHHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHcc--------CCHHHHHHHHHHHHH
Q 007461 396 IPGQVTYASIINAYCRI-----ALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKT--------GRIRDAMWLVAKMKA 462 (603)
Q Consensus 396 ~p~~~~~~~ll~~~~~~-----g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~--------g~~~~A~~~~~~m~~ 462 (603)
+.+...|...+.+.... +..++|..+|++..+.. +-....|..+..++... ++...+.+..++...
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld-P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a 412 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE-PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA 412 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence 44555565555554322 12445666666666553 22233333332222211 112233333333222
Q ss_pred c-CCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 007461 463 K-GCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNRAREFDMCVKFYNEFRMNG 534 (603)
Q Consensus 463 ~-~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 534 (603)
. ....+...|..+.-.....|++++|...+++.++. .|+...|..+...+...|+.++|.+.+++....+
T Consensus 413 l~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L--~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~ 483 (517)
T PRK10153 413 LPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDL--EMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLR 483 (517)
T ss_pred cccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 1 12233455555555555566666666666666643 3555666666666666666666666666666543
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0098 Score=51.36 Aligned_cols=89 Identities=13% Similarity=0.309 Sum_probs=73.8
Q ss_pred CCCHhHHHHHHHHHHh-----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc----------------CCHHHHH
Q 007461 466 EPNVWIYNSLMDMHGR-----AKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNRA----------------REFDMCV 524 (603)
Q Consensus 466 ~p~~~~~~~li~~~~~-----~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~----------------g~~~~a~ 524 (603)
..|..+|..+++.|.+ .|..+=....++.|.+.|+.-|..+|+.|++.+=+. .+-+-|+
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i 123 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAI 123 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHH
Confidence 4577888888888765 467777888899999999999999999999986432 2456789
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 007461 525 KFYNEFRMNGGVIDRAIAGIMVGVFSKLSQ 554 (603)
Q Consensus 525 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 554 (603)
+++++|...|+-||..++..+++.|.+.+.
T Consensus 124 ~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 124 DLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 999999999999999999999999977665
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.023 Score=57.96 Aligned_cols=63 Identities=17% Similarity=0.111 Sum_probs=39.6
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcC
Q 007461 260 HMYKILCDSLGKSGRAFEALKFFRDMKEKGILEDPSIYASLICSFASITEVKLAEELFKEAEEKG 324 (603)
Q Consensus 260 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 324 (603)
..|..+.-.....|++++|...+++.... .|+...|..+...+...|+.++|.+.++++...+
T Consensus 421 ~~~~ala~~~~~~g~~~~A~~~l~rAl~L--~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~ 483 (517)
T PRK10153 421 RIYEILAVQALVKGKTDEAYQAINKAIDL--EMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLR 483 (517)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 45555555555566666666666666665 3456666666666666666666666666666554
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.025 Score=51.52 Aligned_cols=101 Identities=9% Similarity=-0.051 Sum_probs=60.9
Q ss_pred CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC---ChHHHHHHHHHHHhcCCcchhhHH
Q 007461 114 RPEKSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRAR---KFKIANTLLQVFITDGEIALLAFN 190 (603)
Q Consensus 114 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~ 190 (603)
+-|...|-.|...|...|+++.|..-|....+.. +++...+..+..++.... +..++..+|+++...++.++.+..
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~ 231 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALS 231 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHH
Confidence 3456666666666666666666666666666553 445555555555543321 234566666666666666666666
Q ss_pred HHHhhhhhcCcHHHHHHHHHHHHhC
Q 007461 191 SAMGGYNKLHMYYSTILVYEKMKSA 215 (603)
Q Consensus 191 ~l~~~~~~~~~~~~a~~~~~~m~~~ 215 (603)
.|...+...|++.+|...++.|.+.
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhc
Confidence 6666666666666666666666654
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.018 Score=45.65 Aligned_cols=106 Identities=8% Similarity=-0.078 Sum_probs=64.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHccCChHHHHHHHHHHHhcCCc---chhhHHHHHhhhh
Q 007461 123 LIRYLVQSKKWDSIVSLSEDFKIYNVLPD--AHTCSRLVASCVRARKFKIANTLLQVFITDGEI---ALLAFNSAMGGYN 197 (603)
Q Consensus 123 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~l~~~~~ 197 (603)
+..++-..|+.++|+.+|+.....|.... ...+..+...+...|++++|..+|+......|. +......+..++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 44556667788888888888777764443 235555666677778888888887777665432 3333333444566
Q ss_pred hcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 007461 198 KLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYY 232 (603)
Q Consensus 198 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 232 (603)
..|+.++|++.+-..... +...|..-|..|+
T Consensus 87 ~~gr~~eAl~~~l~~la~----~~~~y~ra~~~ya 117 (120)
T PF12688_consen 87 NLGRPKEALEWLLEALAE----TLPRYRRAIRFYA 117 (120)
T ss_pred HCCCHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 677777777766554432 2224444444443
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.11 Score=43.53 Aligned_cols=130 Identities=8% Similarity=0.009 Sum_probs=80.0
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcC---CCCCHhHH
Q 007461 396 IPGQVTYASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKG---CEPNVWIY 472 (603)
Q Consensus 396 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---~~p~~~~~ 472 (603)
.|+...-..+..++.+.|+..+|...|.+...--+..|......+.++....+++..|...++++.+.. -.|| +.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd--~~ 163 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD--GH 163 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC--ch
Confidence 455555666777777777777777777776655455666677777777777777777777777776641 1222 23
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 007461 473 NSLMDMHGRAKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNRAREFDMCVKFYNE 529 (603)
Q Consensus 473 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 529 (603)
-.+.+.+...|...+|+..|+..... .|+...-......+.+.|+.+++..-+.+
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~~ 218 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYVA 218 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence 34456667777777777777777643 44544433334445556655555444433
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0016 Score=45.99 Aligned_cols=49 Identities=16% Similarity=0.024 Sum_probs=20.9
Q ss_pred CChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHh
Q 007461 166 RKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKS 214 (603)
Q Consensus 166 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 214 (603)
|++++|.+.|+.+....|.+..++..+..+|.+.|++++|.++++++..
T Consensus 5 ~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 5 GDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp THHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred cCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4444444444444444444444444444444444444444444444433
|
... |
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.031 Score=44.28 Aligned_cols=94 Identities=19% Similarity=0.200 Sum_probs=56.2
Q ss_pred HHhhhhhcCcHHHHHHHHHHHHhCCCCCC--hhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHH
Q 007461 192 AMGGYNKLHMYYSTILVYEKMKSAGIVLD--SGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSL 269 (603)
Q Consensus 192 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~ 269 (603)
+..++-..|+.++|+.+|++....|.... ...+..+...+...|++++|..+|++.....+.. +.+......+.-++
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~-~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDD-ELNAALRVFLALAL 85 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc-cccHHHHHHHHHHH
Confidence 34455666777777777777777665533 2345556667777777777777777766543321 11122333344566
Q ss_pred hccCCHHHHHHHHHHHH
Q 007461 270 GKSGRAFEALKFFRDMK 286 (603)
Q Consensus 270 ~~~g~~~~A~~~~~~m~ 286 (603)
...|+.++|++.+-...
T Consensus 86 ~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 86 YNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHCCCHHHHHHHHHHHH
Confidence 66777777777665544
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0025 Score=44.53 Aligned_cols=54 Identities=9% Similarity=0.007 Sum_probs=27.9
Q ss_pred HHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHh
Q 007461 161 SCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKS 214 (603)
Q Consensus 161 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 214 (603)
.+.+.|++++|+..|+.+.+..|.+..+|..+..++...|++++|...|+++++
T Consensus 6 ~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 6 ALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344455555555555555555555555555555555555555555555555544
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.18 Score=44.83 Aligned_cols=130 Identities=11% Similarity=0.077 Sum_probs=64.1
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHH-----HHHHHH
Q 007461 262 YKILCDSLGKSGRAFEALKFFRDMKEKGILEDPSIYASLICSFASITEVKLAEELFKEAEEKGMLRDPE-----VCLKLV 336 (603)
Q Consensus 262 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-----~~~~l~ 336 (603)
.+.++..+.-.|.+.-.+.++++.++...+.++.....+.+...+.||.+.|...++.+.+..-..|.. +.....
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a 259 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSA 259 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhh
Confidence 445555666666666666666666665444455555666666666666666666666555432222222 222222
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007461 337 LMYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLIS 392 (603)
Q Consensus 337 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 392 (603)
..|.-.+++..|...++++...+.. +...-|.-.-+..-.|+..+|++.++.|..
T Consensus 260 ~i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~ 314 (366)
T KOG2796|consen 260 FLHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQ 314 (366)
T ss_pred hheecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhc
Confidence 2344445555555555555544432 222222222223334455555555555544
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.18 Score=44.80 Aligned_cols=45 Identities=13% Similarity=0.134 Sum_probs=22.2
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHcCCCCCH----hHHHHHHHHHHhcCCHH
Q 007461 440 MVAMYGKTGRIRDAMWLVAKMKAKGCEPNV----WIYNSLMDMHGRAKNLR 486 (603)
Q Consensus 440 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~----~~~~~li~~~~~~g~~~ 486 (603)
+.+.|.+.|.+..|..-++.+.+. -|+. .....++.+|.+.|..+
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~--yp~t~~~~~al~~l~~~y~~l~~~~ 195 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIEN--YPDTPAAEEALARLAEAYYKLGLKQ 195 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTT-HH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHH--CCCCchHHHHHHHHHHHHHHhCChH
Confidence 445556666666666666666554 2322 22344455555555554
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0014 Score=46.26 Aligned_cols=57 Identities=14% Similarity=0.198 Sum_probs=32.9
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcc
Q 007461 128 VQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIA 185 (603)
Q Consensus 128 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 185 (603)
.+.|++++|+++|+.+.... +.+...+..+..+|.+.|++++|..+++.+....+.+
T Consensus 2 l~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~ 58 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDN 58 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTH
T ss_pred hhccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCH
Confidence 34566666666666665554 3355555556666666666666666666665554443
|
... |
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0021 Score=44.84 Aligned_cols=60 Identities=13% Similarity=0.061 Sum_probs=35.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCC
Q 007461 123 LIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGE 183 (603)
Q Consensus 123 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 183 (603)
+...+.+.|++++|+..|+.+.+.. +-+...+..+..++...|++++|...|+.+.+..|
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P 62 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALELDP 62 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 3445566666666666666666554 33455666666666666666666666666655444
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.32 Score=46.94 Aligned_cols=439 Identities=12% Similarity=0.077 Sum_probs=219.4
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCC------HHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhh--hh
Q 007461 127 LVQSKKWDSIVSLSEDFKIYNVLPD------AHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGY--NK 198 (603)
Q Consensus 127 ~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~--~~ 198 (603)
+-+.+++.+|..+|.+..+.. ..+ ....+.++++|.. ++.+.....+....+..+ ...|-.+..++ -+
T Consensus 16 Lqkq~~~~esEkifskI~~e~-~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~~~--~s~~l~LF~~L~~Y~ 91 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDEK-ESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQFG--KSAYLPLFKALVAYK 91 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHHh-hcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHhcC--CchHHHHHHHHHHHH
Confidence 345788888888888876542 222 2234556666654 456666666666655444 34444444443 36
Q ss_pred cCcHHHHHHHHHHHHhC--CCCC---Chh---------hHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-CCCccHHHHH
Q 007461 199 LHMYYSTILVYEKMKSA--GIVL---DSG---------CYCQIMEAYYKIGDSEKVAALFLECKSRKLD-STPFSTHMYK 263 (603)
Q Consensus 199 ~~~~~~a~~~~~~m~~~--~~~p---~~~---------~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~~~ 263 (603)
.+.+.+|++.+..-.+. +..| |.. .-+..++.+...|++.+++.+++++..+-.. ....+..+||
T Consensus 92 ~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd 171 (549)
T PF07079_consen 92 QKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYD 171 (549)
T ss_pred hhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHH
Confidence 67788888777665543 2221 111 1134556677778888888888888776543 1223556777
Q ss_pred HHHHHHhccC--------C-------HHHHHHHHHHHHHC------CCCCCHHHHHHHHHHHHcc--CCHHHHHHHHHHH
Q 007461 264 ILCDSLGKSG--------R-------AFEALKFFRDMKEK------GILEDPSIYASLICSFASI--TEVKLAEELFKEA 320 (603)
Q Consensus 264 ~li~~~~~~g--------~-------~~~A~~~~~~m~~~------g~~p~~~~~~~ll~~~~~~--g~~~~a~~~~~~~ 320 (603)
.++-.+.+.= . ++-++-..++|... .+.|....+..++....-. ....--.++++.-
T Consensus 172 ~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~W 251 (549)
T PF07079_consen 172 RAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENW 251 (549)
T ss_pred HHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHH
Confidence 6554443321 1 11111111222111 1222222222222222111 1112222222222
Q ss_pred HHcCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC----CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 007461 321 EEKGMLRDPE-VCLKLVLMYIEEGLVEKTLDVVESMKNAKLKI----SDCISCAIVNGFSKRRGYWAAVKVYEQLISQGC 395 (603)
Q Consensus 321 ~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~ 395 (603)
...-+.|+-. +...+...+.+ +.+++..+-+.+....+.+ -..++..++....+.++...|-+.+.-+....
T Consensus 252 e~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ld- 328 (549)
T PF07079_consen 252 ENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKILD- 328 (549)
T ss_pred HhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcC-
Confidence 2222333322 23334444443 4555555555444332111 11235556666666677777776666665532
Q ss_pred CCCHHHHH-------HHHHHHH-h---cCChHHHHHHHHHHHHcCCCcC--HhhHHHHHHHHHccCC-HHHHHHHHHHHH
Q 007461 396 IPGQVTYA-------SIINAYC-R---IALYSKAEKVFIEMQQKGFDKC--VVAYSSMVAMYGKTGR-IRDAMWLVAKMK 461 (603)
Q Consensus 396 ~p~~~~~~-------~ll~~~~-~---~g~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~-~~~A~~~~~~m~ 461 (603)
|+...-. .+-+..+ . .-+...-..+++.....++..- ++..-.-..-+-+.|. -++|+++++.+.
T Consensus 329 -p~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il 407 (549)
T PF07079_consen 329 -PRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQLVHYLVFGAKHLWEIGQCDEKALNLLKLIL 407 (549)
T ss_pred -CcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence 3322111 1111111 1 1112223334444443332111 1111122233445555 778888888887
Q ss_pred HcCCCCCHhHHHHHH----HHHHh---cCCHHHHHHHHHHHHhCCCCCCHHH----HHHHHHH--HHhcCCHHHHHHHHH
Q 007461 462 AKGCEPNVWIYNSLM----DMHGR---AKNLRQVEKLWKEMERRKVTPDKVS----YTTVISA--YNRAREFDMCVKFYN 528 (603)
Q Consensus 462 ~~~~~p~~~~~~~li----~~~~~---~g~~~~a~~~~~~m~~~~~~p~~~~----~~~li~~--~~~~g~~~~a~~~~~ 528 (603)
+- -.-|...-|.+. ..|.. ...+.+-.++-+-+.+.|+.|-.+. -|.|.+| +...|++.++.-.-.
T Consensus 408 ~f-t~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~ 486 (549)
T PF07079_consen 408 QF-TNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSS 486 (549)
T ss_pred Hh-ccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 64 122333322222 22322 2344555555566667787764432 3444333 446788888877666
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 007461 529 EFRMNGGVIDRAIAGIMVGVFSKLSQIEELVKLLQDMKSEGTKLDERLYHSAM 581 (603)
Q Consensus 529 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll 581 (603)
-+.+ +.|.+.+|..++-++....++++|.+.+..+ +|+..++++=+
T Consensus 487 WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L-----P~n~~~~dskv 532 (549)
T PF07079_consen 487 WLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKL-----PPNERMRDSKV 532 (549)
T ss_pred HHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC-----CCchhhHHHHH
Confidence 5555 5788889998888888889999999988766 46666665433
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0033 Score=44.54 Aligned_cols=62 Identities=18% Similarity=0.072 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcC-cHHHHHHHHHHHHh
Q 007461 153 HTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLH-MYYSTILVYEKMKS 214 (603)
Q Consensus 153 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~m~~ 214 (603)
.+|..+...+...|++++|+..|++..+.++.+..+|..+..+|...| ++++|++.+++.++
T Consensus 4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 4 EAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 344444444444455555555555554444444445555555555554 45555555544443
|
... |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.49 Score=48.66 Aligned_cols=330 Identities=13% Similarity=0.102 Sum_probs=182.4
Q ss_pred HHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcC---CHHHHHHHHHHHHhCCCCCCCccHHHHHHHH
Q 007461 190 NSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIG---DSEKVAALFLECKSRKLDSTPFSTHMYKILC 266 (603)
Q Consensus 190 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li 266 (603)
..++.-+...+.+..|+++-..+...-..- ..+|.....-+.+.. +-+.+..+-+++... ..+ ..+|..+.
T Consensus 441 ~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~-~~~----~iSy~~iA 514 (829)
T KOG2280|consen 441 EVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK-LTP----GISYAAIA 514 (829)
T ss_pred hhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhccc-CCC----ceeHHHHH
Confidence 345666777788888888877664432221 456666666666553 233333343444332 122 24688888
Q ss_pred HHHhccCCHHHHHHHHHHHHHCCCC----CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 007461 267 DSLGKSGRAFEALKFFRDMKEKGIL----EDPSIYASLICSFASITEVKLAEELFKEAEEKGMLRDPEVCLKLVLMYIEE 342 (603)
Q Consensus 267 ~~~~~~g~~~~A~~~~~~m~~~g~~----p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 342 (603)
.--...|+++-|..+++.=...+.+ .+..-+...+.-+...|+.+....++-.+...- +...+. .-.
T Consensus 515 ~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~---~~s~l~------~~l 585 (829)
T KOG2280|consen 515 RRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKL---NRSSLF------MTL 585 (829)
T ss_pred HHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHH---HHHHHH------HHH
Confidence 8888899999888887543222111 012223334444455555555555555444321 111111 111
Q ss_pred CCHHHHHHHHHHHHh-CCCCCCHhhHHHHHHHHHhcCCHHHHHHHHH--HHH----HcCCCCCHHHHHHHHHHHHhcCCh
Q 007461 343 GLVEKTLDVVESMKN-AKLKISDCISCAIVNGFSKRRGYWAAVKVYE--QLI----SQGCIPGQVTYASIINAYCRIALY 415 (603)
Q Consensus 343 g~~~~a~~~~~~~~~-~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~--~m~----~~g~~p~~~~~~~ll~~~~~~g~~ 415 (603)
.+...|..+|.+... .+-. -+..+...++..+++.-|. ... ..|..|+. ....++|.+....
T Consensus 586 ~~~p~a~~lY~~~~r~~~~~--------~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~l---k~~a~~~a~sk~~ 654 (829)
T KOG2280|consen 586 RNQPLALSLYRQFMRHQDRA--------TLYDFYNQDDNHQALASFHLQASYAAETIEGRIPAL---KTAANAFAKSKEK 654 (829)
T ss_pred HhchhhhHHHHHHHHhhchh--------hhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhH---HHHHHHHhhhhhh
Confidence 222334444444332 2111 0111222222222222211 100 11222332 2233344443331
Q ss_pred ----------HHHHHHHHHHHH-cCCCcCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCC
Q 007461 416 ----------SKAEKVFIEMQQ-KGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKN 484 (603)
Q Consensus 416 ----------~~a~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 484 (603)
.+-+++.+.+.. .|..-..-+.+--+.-+...|+..+|.++-.+.+ .||...|-.-+.+++..++
T Consensus 655 s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~k 730 (829)
T KOG2280|consen 655 SFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKK 730 (829)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhh
Confidence 112222333322 2333334455566667778899999999988876 6899999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 007461 485 LRQVEKLWKEMERRKVTPDKVSYTTVISAYNRAREFDMCVKFYNEFRMNGGVIDRAIAGIMVGVFSKLSQIEELVKLLQD 564 (603)
Q Consensus 485 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 564 (603)
+++-+++-+.+. .+..|.-...+|.+.|+.++|.+++.+.... .-.+.+|.+.|++.+|.++--+
T Consensus 731 weeLekfAkskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~~l---------~ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 731 WEELEKFAKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRVGGL---------QEKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred HHHHHHHHhccC------CCCCchhHHHHHHhcccHHHHhhhhhccCCh---------HHHHHHHHHhccHHHHHHHHHH
Confidence 998887776654 2456778899999999999999998765331 1467788999999998876433
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.43 Score=47.92 Aligned_cols=118 Identities=14% Similarity=0.110 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH-HcCCHHHHHHHHHHH
Q 007461 169 KIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYY-KIGDSEKVAALFLEC 247 (603)
Q Consensus 169 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~-~~g~~~~a~~~~~~~ 247 (603)
+.++.++..+...-|---.-|......-.+.|..+.+.++|++-+. |++-+...|...+..+. ..|+.+.....|+..
T Consensus 62 ~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A 140 (577)
T KOG1258|consen 62 DALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSYLAFLKNNNGDPETLRDLFERA 140 (577)
T ss_pred HHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 3344444444433333333344444444455556666666666554 24444444444433332 345566666666555
Q ss_pred HhCCCCCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 007461 248 KSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEK 288 (603)
Q Consensus 248 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 288 (603)
.......- .+...|...|..-..++++.....+|++.++.
T Consensus 141 ~~~vG~dF-~S~~lWdkyie~en~qks~k~v~~iyeRilei 180 (577)
T KOG1258|consen 141 KSYVGLDF-LSDPLWDKYIEFENGQKSWKRVANIYERILEI 180 (577)
T ss_pred HHhcccch-hccHHHHHHHHHHhccccHHHHHHHHHHHHhh
Confidence 43211110 01235666666666666666666666666653
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0031 Score=44.68 Aligned_cols=65 Identities=9% Similarity=0.027 Sum_probs=40.1
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC-ChHHHHHHHHHHHhc
Q 007461 116 EKSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRAR-KFKIANTLLQVFITD 181 (603)
Q Consensus 116 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~ 181 (603)
++..|..+...+...|++++|+..|++..+.+ +.+...|..+..++...| ++++|++.+++..+.
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 34556666666666666666666666666654 344556666666666666 566666666665544
|
... |
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.34 Score=46.15 Aligned_cols=52 Identities=17% Similarity=0.171 Sum_probs=24.6
Q ss_pred HhcCChHHHHHHHHHHHHc---CCCcCHhhHHHHHHHHHccCCHHHHHHHHHHHH
Q 007461 410 CRIALYSKAEKVFIEMQQK---GFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMK 461 (603)
Q Consensus 410 ~~~g~~~~a~~~~~~~~~~---~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 461 (603)
.+.|++..|.+.|.+.+.. +..++...|........+.|+.++|+.--++..
T Consensus 260 fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al 314 (486)
T KOG0550|consen 260 FKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEAL 314 (486)
T ss_pred hhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhh
Confidence 3445555555555544432 223344444444444555555555555444444
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.032 Score=52.67 Aligned_cols=129 Identities=15% Similarity=0.032 Sum_probs=60.5
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHc----CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh----C-CCCCCHhh
Q 007461 297 YASLICSFASITEVKLAEELFKEAEEK----GM-LRDPEVCLKLVLMYIEEGLVEKTLDVVESMKN----A-KLKISDCI 366 (603)
Q Consensus 297 ~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~-~~~~~~~~ 366 (603)
|..|.+.|.-.|+++.|...++.-++. |- ......+..+..+++-.|+++.|.+.|+.... . +-.....+
T Consensus 198 ~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQs 277 (639)
T KOG1130|consen 198 YGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQS 277 (639)
T ss_pred hcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHH
Confidence 334444444445555555544432221 11 11223444555555556666666555554221 1 11122334
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH----c-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 007461 367 SCAIVNGFSKRRGYWAAVKVYEQLIS----Q-GCIPGQVTYASIINAYCRIALYSKAEKVFIEM 425 (603)
Q Consensus 367 ~~~li~~~~~~~~~~~a~~~~~~m~~----~-g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 425 (603)
..+|.+.|.-..+++.|+.++.+-.. . ...-....+..+..++...|..++|..+.+.-
T Consensus 278 cYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~h 341 (639)
T KOG1130|consen 278 CYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELH 341 (639)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 55556666666666666665544221 0 11122345556666666666666666555443
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.057 Score=47.97 Aligned_cols=59 Identities=12% Similarity=0.014 Sum_probs=24.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcC
Q 007461 124 IRYLVQSKKWDSIVSLSEDFKIYNV--LPDAHTCSRLVASCVRARKFKIANTLLQVFITDG 182 (603)
Q Consensus 124 ~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 182 (603)
...+...|++.+|...|+.+..... +--..+.-.++.++.+.|+++.|...++.+....
T Consensus 12 a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y 72 (203)
T PF13525_consen 12 ALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLY 72 (203)
T ss_dssp HHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 3344445555555555555544321 0012233334444444455555555555444433
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.28 Score=43.72 Aligned_cols=133 Identities=10% Similarity=0.045 Sum_probs=87.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhHHHHHH-----
Q 007461 402 YASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLM----- 476 (603)
Q Consensus 402 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li----- 476 (603)
.+.++..+...|.+.-....+++..+...+.++.....|.+.-.+.|+.+.|...|++..+..-..|..+.+.++
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a 259 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSA 259 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhh
Confidence 445556666667777777788888777656677777888888888888888888888766543333444443333
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 007461 477 DMHGRAKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNRAREFDMCVKFYNEFRMNGG 535 (603)
Q Consensus 477 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 535 (603)
..|.-.+++..|...+.+.....-. |....|.-.-+..-.|+..+|++.++.|+...+
T Consensus 260 ~i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P 317 (366)
T KOG2796|consen 260 FLHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQQDP 317 (366)
T ss_pred hheecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 3455567788888888877655322 333333333334445788888888888887643
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.53 Score=45.44 Aligned_cols=414 Identities=13% Similarity=0.119 Sum_probs=191.2
Q ss_pred HHHHHHhhCCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhc
Q 007461 102 DYYNEAKKLPEFRPEKSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITD 181 (603)
Q Consensus 102 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 181 (603)
++=++..+. +.|..+|-.|++.+...+..++..+++++|..- ++--..+|..-+++=....+++..+.+|.+....
T Consensus 30 rLRerIkdN---PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~p-fp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k 105 (660)
T COG5107 30 RLRERIKDN---PTNILSYFQLIQYLETQESMDAEREMYEQLSSP-FPIMEHAWRLYMSGELARKDFRSVESLFGRCLKK 105 (660)
T ss_pred HHHHHhhcC---chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCC-CccccHHHHHHhcchhhhhhHHHHHHHHHHHHhh
Confidence 444455443 456777888888888888888888888877532 2344567777776666667777777888777654
Q ss_pred CCcchhhHHHHHhhhhhcCcH------HHHHHHHHHHHh-CCCCCC-hhhHHHHHHHHH---------HcCCHHHHHHHH
Q 007461 182 GEIALLAFNSAMGGYNKLHMY------YSTILVYEKMKS-AGIVLD-SGCYCQIMEAYY---------KIGDSEKVAALF 244 (603)
Q Consensus 182 ~~~~~~~~~~l~~~~~~~~~~------~~a~~~~~~m~~-~~~~p~-~~~~~~ll~~~~---------~~g~~~~a~~~~ 244 (603)
..+...|...+.--.+.+.. ....+.|+-... .++.|- ...|+..+..+- .+.++|..++.+
T Consensus 106 -~l~ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y 184 (660)
T COG5107 106 -SLNLDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGY 184 (660)
T ss_pred -hccHhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHH
Confidence 33455565555544433321 111233333322 233332 223333332221 223445555556
Q ss_pred HHHHhCCCCCCCccHHHHHHH------HHH-----Hhc--cCCHHHHHHHHHHHHH--CCCCC----CHHHHHH------
Q 007461 245 LECKSRKLDSTPFSTHMYKIL------CDS-----LGK--SGRAFEALKFFRDMKE--KGILE----DPSIYAS------ 299 (603)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~l------i~~-----~~~--~g~~~~A~~~~~~m~~--~g~~p----~~~~~~~------ 299 (603)
.++.......- ...|+.. +.. +.. .--+..|...++++.. .|+.. +..+++.
T Consensus 185 ~ral~tP~~nl---eklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~ 261 (660)
T COG5107 185 MRALQTPMGNL---EKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSD 261 (660)
T ss_pred HHHHcCccccH---HHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhcccccccc
Confidence 55543322110 1122111 110 100 1123455566665532 23221 2222222
Q ss_pred -----HHHHHHcc-----CC--HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhH
Q 007461 300 -----LICSFASI-----TE--VKLAEELFKEAEEKGMLRDPEVCLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCIS 367 (603)
Q Consensus 300 -----ll~~~~~~-----g~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 367 (603)
.|.--... |+ .....-++++.... +...+.+|--.-..+...++-+.|+.....-....+ + ..
T Consensus 262 S~WlNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y-~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~sp--s--L~ 336 (660)
T COG5107 262 SNWLNWIKWEMENGLKLGGRPHEQRIHYIHNQILDY-FYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSP--S--LT 336 (660)
T ss_pred chhhhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCC--c--hh
Confidence 22111111 11 12222233333322 123444555444455566777777666554332221 1 00
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH-------c-------CC---------------CCCHHHHHHHHHHHHhcCChHHH
Q 007461 368 CAIVNGFSKRRGYWAAVKVYEQLIS-------Q-------GC---------------IPGQVTYASIINAYCRIALYSKA 418 (603)
Q Consensus 368 ~~li~~~~~~~~~~~a~~~~~~m~~-------~-------g~---------------~p~~~~~~~ll~~~~~~g~~~~a 418 (603)
-.+-..|.-.++-++....|+.... . +. .--...|...+++..+..-++.|
T Consensus 337 ~~lse~yel~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aa 416 (660)
T COG5107 337 MFLSEYYELVNDEEAVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAA 416 (660)
T ss_pred eeHHHHHhhcccHHHHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHH
Confidence 1111222222222222222222111 0 00 00112344455555555556666
Q ss_pred HHHHHHHHHcC-CCcCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhHH-HHHHHHHHhcCCHHHHHHHHHHHH
Q 007461 419 EKVFIEMQQKG-FDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIY-NSLMDMHGRAKNLRQVEKLWKEME 496 (603)
Q Consensus 419 ~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~-~~li~~~~~~g~~~~a~~~~~~m~ 496 (603)
..+|-+..+.+ +.+++..+++++.-++ .|+..-|..+|+.-... -||...| +-.+.-+...++-+.|..+|+..+
T Consensus 417 R~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl~fLi~inde~naraLFetsv 493 (660)
T COG5107 417 RKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYLLFLIRINDEENARALFETSV 493 (660)
T ss_pred HHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCcHHHHHHHHHHhH
Confidence 66666666665 4556666666666544 35666666666655443 2333332 334444555666666666666443
Q ss_pred hCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007461 497 RRKVTPD--KVSYTTVISAYNRAREFDMCVKFYNEFRM 532 (603)
Q Consensus 497 ~~~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 532 (603)
+. +..+ ...|..+|.-=..-|++..+..+-+.+.+
T Consensus 494 ~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 494 ER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE 530 (660)
T ss_pred HH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence 31 2222 23456666655566666555555555544
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.015 Score=54.74 Aligned_cols=132 Identities=13% Similarity=0.013 Sum_probs=88.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH----hCCC-CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH----cCC-CCCH
Q 007461 330 EVCLKLVLMYIEEGLVEKTLDVVESMK----NAKL-KISDCISCAIVNGFSKRRGYWAAVKVYEQLIS----QGC-IPGQ 399 (603)
Q Consensus 330 ~~~~~l~~~~~~~g~~~~a~~~~~~~~----~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~----~g~-~p~~ 399 (603)
..|..|...|.-.|+++.|+...+.-. +-|- ......+..+.+++.-.|+++.|.+.|+.-.. .|- ....
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 356667777777889998876654321 2121 12234577788889999999999998876432 221 1233
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHc-----CCCcCHhhHHHHHHHHHccCCHHHHHHHHHHHH
Q 007461 400 VTYASIINAYCRIALYSKAEKVFIEMQQK-----GFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMK 461 (603)
Q Consensus 400 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 461 (603)
...-.+.+.|.-..++++|+.++.+-... ...-....|.+|..+|...|..++|+.+.+.-+
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 44556777777777888888887654321 112346778889999999999999988876654
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.94 Score=47.36 Aligned_cols=178 Identities=15% Similarity=0.135 Sum_probs=110.9
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH----HHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHH
Q 007461 118 STLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRL----VASCVRARKFKIANTLLQVFITDGEIALLAFNSAM 193 (603)
Q Consensus 118 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l----l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 193 (603)
.....-+..+.+-..++-|+.+.+.- + .|..+...+ .+-+.+.|++++|...+-+-...-.+ ..++
T Consensus 335 k~le~kL~iL~kK~ly~~Ai~LAk~~---~--~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~-----s~Vi 404 (933)
T KOG2114|consen 335 KDLETKLDILFKKNLYKVAINLAKSQ---H--LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEP-----SEVI 404 (933)
T ss_pred ccHHHHHHHHHHhhhHHHHHHHHHhc---C--CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCCh-----HHHH
Confidence 34555677777777788887776543 2 333333333 34455779999998776655432222 2345
Q ss_pred hhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccC
Q 007461 194 GGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSG 273 (603)
Q Consensus 194 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 273 (603)
.-|....+...-..+++.+.+.|+. +..--..|+.+|.+.++.++..++.+......+.. -....+..+.+.+
T Consensus 405 ~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~~g~~~f------d~e~al~Ilr~sn 477 (933)
T KOG2114|consen 405 KKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCDKGEWFF------DVETALEILRKSN 477 (933)
T ss_pred HHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCCCcceee------eHHHHHHHHHHhC
Confidence 5566666777777788888888876 55566788999999999999888877665221211 1445666666777
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 007461 274 RAFEALKFFRDMKEKGILEDPSIYASLICSFASITEVKLAEELFKEA 320 (603)
Q Consensus 274 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 320 (603)
-.++|..+-..... .......++ -..+++++|.+.++.+
T Consensus 478 yl~~a~~LA~k~~~-----he~vl~ill---e~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 478 YLDEAELLATKFKK-----HEWVLDILL---EDLHNYEEALRYISSL 516 (933)
T ss_pred hHHHHHHHHHHhcc-----CHHHHHHHH---HHhcCHHHHHHHHhcC
Confidence 77776655443322 223333333 3567788888877654
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.039 Score=50.85 Aligned_cols=100 Identities=11% Similarity=0.103 Sum_probs=53.2
Q ss_pred hHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCC--hhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHH
Q 007461 188 AFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLD--SGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKIL 265 (603)
Q Consensus 188 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l 265 (603)
.|...+..+.+.|++++|+..|+.+++...... ...+-.+...|...|++++|...|+.+....+.... ...++-.+
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~-~~dAl~kl 223 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPK-AADAMFKV 223 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcc-hhHHHHHH
Confidence 344444444445666666666666655421110 134555666666666666666666666544332211 22345555
Q ss_pred HHHHhccCCHHHHHHHHHHHHHC
Q 007461 266 CDSLGKSGRAFEALKFFRDMKEK 288 (603)
Q Consensus 266 i~~~~~~g~~~~A~~~~~~m~~~ 288 (603)
...+...|+.++|.+.|+.+.+.
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH
Confidence 55666666666666666666654
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.49 Score=45.56 Aligned_cols=162 Identities=10% Similarity=0.040 Sum_probs=81.3
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcC---CCcCHhhHHHHHHHHHc---cCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHH
Q 007461 405 IINAYCRIALYSKAEKVFIEMQQKG---FDKCVVAYSSMVAMYGK---TGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDM 478 (603)
Q Consensus 405 ll~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 478 (603)
++-+|....+++...++.+.+.... +..+...-.....++.+ .|+.++|++++..+....-.++..+|..+...
T Consensus 147 lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRI 226 (374)
T PF13281_consen 147 LLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRI 226 (374)
T ss_pred HHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHH
Confidence 3334555555666666655555431 11122222233444444 56666666666664444344555555555544
Q ss_pred HHh---------cCCHHHHHHHHHHHHhCCCCCCHHH---HHHHHHHHHhcC-CHHHHHHHH----HHHHHCCCC---CC
Q 007461 479 HGR---------AKNLRQVEKLWKEMERRKVTPDKVS---YTTVISAYNRAR-EFDMCVKFY----NEFRMNGGV---ID 538 (603)
Q Consensus 479 ~~~---------~g~~~~a~~~~~~m~~~~~~p~~~~---~~~li~~~~~~g-~~~~a~~~~----~~~~~~~~~---~~ 538 (603)
|-. ....++|...|.+.-+. .||..+ +..|+......- .-.+..++- ..+.++|.. .|
T Consensus 227 yKD~~~~s~~~d~~~ldkAi~~Y~kgFe~--~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~d 304 (374)
T PF13281_consen 227 YKDLFLESNFTDRESLDKAIEWYRKGFEI--EPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQD 304 (374)
T ss_pred HHHHHHHcCccchHHHHHHHHHHHHHHcC--CccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccccc
Confidence 421 12366777777776533 355543 222322222110 111222222 122233322 33
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 007461 539 RAIAGIMVGVFSKLSQIEELVKLLQDMKSE 568 (603)
Q Consensus 539 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 568 (603)
-..+..++++..-.|+.++|.+..++|.+.
T Consensus 305 YWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 305 YWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 345567888888889999999999988865
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.6 Score=44.50 Aligned_cols=43 Identities=16% Similarity=0.103 Sum_probs=21.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHH
Q 007461 120 LKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIA 171 (603)
Q Consensus 120 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 171 (603)
|..+...-...|+.+-|..+++ .+|...-- +-.+.+.|+.+.|
T Consensus 3 ~a~IA~~A~~~GR~~LA~~LL~------~Ep~~~~q---VplLL~m~e~e~A 45 (319)
T PF04840_consen 3 YAEIARKAYEEGRPKLATKLLE------LEPRASKQ---VPLLLKMGEDELA 45 (319)
T ss_pred HHHHHHHHHHcChHHHHHHHHH------cCCChHHH---HHHHhcCCchHHH
Confidence 4455555556666666665554 45554332 2233445555544
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.035 Score=51.12 Aligned_cols=101 Identities=11% Similarity=0.051 Sum_probs=67.2
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCC--CCCHHHHHHH
Q 007461 223 CYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEKGI--LEDPSIYASL 300 (603)
Q Consensus 223 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~~~~~l 300 (603)
.|...+..+.+.|++++|...|+.+....+.... ...++-.+...|...|++++|...|+.+.+.-. ......+..+
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~-a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTY-QPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 4454444455668888888888888776654321 124667778888888888888888888876411 1123445555
Q ss_pred HHHHHccCCHHHHHHHHHHHHHcC
Q 007461 301 ICSFASITEVKLAEELFKEAEEKG 324 (603)
Q Consensus 301 l~~~~~~g~~~~a~~~~~~~~~~~ 324 (603)
...+...|+.+.|..+++.+.+..
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~~y 247 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIKKY 247 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC
Confidence 566667888888888888877754
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.44 Score=45.85 Aligned_cols=80 Identities=15% Similarity=0.132 Sum_probs=43.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhc---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 007461 225 CQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGK---SGRAFEALKFFRDMKEKGILEDPSIYASLI 301 (603)
Q Consensus 225 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll 301 (603)
..++-.|....+++...++.+.+..............-...+-++-+ .|+.++|++++..+......++..+|..+.
T Consensus 145 ~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~G 224 (374)
T PF13281_consen 145 INLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLG 224 (374)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHH
Confidence 34444566666777777777666554211111111222333444455 677777777777755554556666666666
Q ss_pred HHH
Q 007461 302 CSF 304 (603)
Q Consensus 302 ~~~ 304 (603)
+.|
T Consensus 225 RIy 227 (374)
T PF13281_consen 225 RIY 227 (374)
T ss_pred HHH
Confidence 555
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.7 Score=44.17 Aligned_cols=122 Identities=13% Similarity=0.070 Sum_probs=61.9
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHH--HhccCCHHHHHHHHHHHHHCCCCCCHHHHHH---HH--
Q 007461 229 EAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDS--LGKSGRAFEALKFFRDMKEKGILEDPSIYAS---LI-- 301 (603)
Q Consensus 229 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~---ll-- 301 (603)
..+.-.|+.++|..+--.+...+... .+...+++ +.-.++.+.+...|++.+.. .||...-.. ..
T Consensus 177 ~cl~~~~~~~~a~~ea~~ilkld~~n------~~al~vrg~~~yy~~~~~ka~~hf~qal~l--dpdh~~sk~~~~~~k~ 248 (486)
T KOG0550|consen 177 ECLAFLGDYDEAQSEAIDILKLDATN------AEALYVRGLCLYYNDNADKAINHFQQALRL--DPDHQKSKSASMMPKK 248 (486)
T ss_pred hhhhhcccchhHHHHHHHHHhcccch------hHHHHhcccccccccchHHHHHHHhhhhcc--ChhhhhHHhHhhhHHH
Confidence 34455677777776665555544332 23333333 33356677777777776654 333322111 11
Q ss_pred --------HHHHccCCHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 007461 302 --------CSFASITEVKLAEELFKEAEEKG---MLRDPEVCLKLVLMYIEEGLVEKTLDVVESMKNA 358 (603)
Q Consensus 302 --------~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 358 (603)
+-..+.|.+..|.+.+.+.+... ..++...|........+.|+.++|+.--+...+.
T Consensus 249 le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i 316 (486)
T KOG0550|consen 249 LEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI 316 (486)
T ss_pred HHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc
Confidence 11234555666666666655432 2334445555555555566666665555554443
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.61 E-value=1.1 Score=46.98 Aligned_cols=146 Identities=15% Similarity=0.080 Sum_probs=100.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcC
Q 007461 121 KLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLH 200 (603)
Q Consensus 121 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 200 (603)
..-...+.+.|++++|...|-+.+.. +.|. .++.-|....+......+++.+.+.+..+...-..|+.+|.+.+
T Consensus 372 ~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~kfLdaq~IknLt~YLe~L~~~gla~~dhttlLLncYiKlk 445 (933)
T KOG2114|consen 372 RKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKKFLDAQRIKNLTSYLEALHKKGLANSDHTTLLLNCYIKLK 445 (933)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHHhcCHHHHHHHHHHHHHHHHcccccchhHHHHHHHHHHhc
Confidence 33445566789999999988776532 1232 34555666777778888899999988888888899999999999
Q ss_pred cHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccCCHHHHHH
Q 007461 201 MYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALK 280 (603)
Q Consensus 201 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 280 (603)
+.++-.+..+... .|.. ..-....+..+.+.+-.++|..+-....... ..+--.+-..+++++|++
T Consensus 446 d~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~~LA~k~~~he-----------~vl~ille~~~ny~eAl~ 511 (933)
T KOG2114|consen 446 DVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEAELLATKFKKHE-----------WVLDILLEDLHNYEEALR 511 (933)
T ss_pred chHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHHHHHHHhccCH-----------HHHHHHHHHhcCHHHHHH
Confidence 9998877766544 2322 1124456677777777788777665443311 122233445688999999
Q ss_pred HHHHHH
Q 007461 281 FFRDMK 286 (603)
Q Consensus 281 ~~~~m~ 286 (603)
.+..|.
T Consensus 512 yi~slp 517 (933)
T KOG2114|consen 512 YISSLP 517 (933)
T ss_pred HHhcCC
Confidence 887764
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.79 Score=44.29 Aligned_cols=430 Identities=12% Similarity=0.073 Sum_probs=229.0
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCC
Q 007461 138 SLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGI 217 (603)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~ 217 (603)
++-+.+.+ + +.|..+|-.|+.-+...+..++.+++++++...-|--..+|..-+.+-...+++.....+|.+-+....
T Consensus 30 rLRerIkd-N-PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l 107 (660)
T COG5107 30 RLRERIKD-N-PTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSL 107 (660)
T ss_pred HHHHHhhc-C-chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhc
Confidence 44444443 2 678899999999999999999999999999887777788999999999999999999999999887644
Q ss_pred CCChhhHHHHHHHHHHcCCH------HHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHh---ccCC------HHHHHHHH
Q 007461 218 VLDSGCYCQIMEAYYKIGDS------EKVAALFLECKSRKLDSTPFSTHMYKILCDSLG---KSGR------AFEALKFF 282 (603)
Q Consensus 218 ~p~~~~~~~ll~~~~~~g~~------~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~---~~g~------~~~A~~~~ 282 (603)
. ...|..-++--.+.... -...+.|+-... ....++.+...|+..+..+- ..|. .+...+.|
T Consensus 108 ~--ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~-~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y 184 (660)
T COG5107 108 N--LDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLG-CAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGY 184 (660)
T ss_pred c--HhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHh-cccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHH
Confidence 3 55676666644443311 111223332222 11111112235666554432 2343 44455566
Q ss_pred HHHHHCCCCC------CHHHHHHHHHHH-Hc------cCCHHHHHHHHHHHHHc--CCC----CCHHHHHH---------
Q 007461 283 RDMKEKGILE------DPSIYASLICSF-AS------ITEVKLAEELFKEAEEK--GML----RDPEVCLK--------- 334 (603)
Q Consensus 283 ~~m~~~g~~p------~~~~~~~ll~~~-~~------~g~~~~a~~~~~~~~~~--~~~----~~~~~~~~--------- 334 (603)
.+|+...+.- |-..|..=++-. ++ .--+..|++.++++... |+. .+..+++.
T Consensus 185 ~ral~tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~W 264 (660)
T COG5107 185 MRALQTPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSNW 264 (660)
T ss_pred HHHHcCccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccchh
Confidence 6665432110 111111111111 11 11244566666655432 221 12223332
Q ss_pred --HHHHHHHcC-----C-HH-HHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 007461 335 --LVLMYIEEG-----L-VE-KTLDVVESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASI 405 (603)
Q Consensus 335 --l~~~~~~~g-----~-~~-~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 405 (603)
.|..-...| + .. ...-++++....- .....+|--.-.-+...++-+.|+...+.-... .|. .+..
T Consensus 265 lNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y~-~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~--sps---L~~~ 338 (660)
T COG5107 265 LNWIKWEMENGLKLGGRPHEQRIHYIHNQILDYF-YYAEEVWFDYSEYLIGISDKQKALKTVERGIEM--SPS---LTMF 338 (660)
T ss_pred hhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHhhccHHHHHHHHHHhcccC--CCc---hhee
Confidence 111111100 0 00 0111111111110 112223333333344556666666655443221 232 1111
Q ss_pred HHHHHh-cCChHHHHHHHHHHHH--------------cCC---------------CcCHhhHHHHHHHHHccCCHHHHHH
Q 007461 406 INAYCR-IALYSKAEKVFIEMQQ--------------KGF---------------DKCVVAYSSMVAMYGKTGRIRDAMW 455 (603)
Q Consensus 406 l~~~~~-~g~~~~a~~~~~~~~~--------------~~~---------------~~~~~~~~~li~~~~~~g~~~~A~~ 455 (603)
+.-|.. .++-+.....|+...+ .+. ..-..+|...+....+..-++.|..
T Consensus 339 lse~yel~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~ 418 (660)
T COG5107 339 LSEYYELVNDEEAVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARK 418 (660)
T ss_pred HHHHHhhcccHHHHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHH
Confidence 222211 1222222222221110 000 1113456667777777777888888
Q ss_pred HHHHHHHcC-CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 007461 456 LVAKMKAKG-CEPNVWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDKVS-YTTVISAYNRAREFDMCVKFYNEFRMN 533 (603)
Q Consensus 456 ~~~~m~~~~-~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~-~~~li~~~~~~g~~~~a~~~~~~~~~~ 533 (603)
+|-+..+.| +.+++.++++++..++. |+...|.++|+--... -||... -+-.+..+..-++-+.|..+|+..+.+
T Consensus 419 ~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~--f~d~~~y~~kyl~fLi~inde~naraLFetsv~r 495 (660)
T COG5107 419 LFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLK--FPDSTLYKEKYLLFLIRINDEENARALFETSVER 495 (660)
T ss_pred HHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHH
Confidence 888888777 56788888888876654 5777788888764432 245443 344555566778888888888866543
Q ss_pred CCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 007461 534 GGVID--RAIAGIMVGVFSKLSQIEELVKLLQDMKSEGTKLDERLYHSAMNAL 584 (603)
Q Consensus 534 ~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~a~ 584 (603)
+..+ ..+|..+|+--..-|+...+..+-++|.+. .|-..+......-|
T Consensus 496 -~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~--~pQen~~evF~Sry 545 (660)
T COG5107 496 -LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL--VPQENLIEVFTSRY 545 (660)
T ss_pred -HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH--cCcHhHHHHHHHHH
Confidence 2223 467888888778888888888888888754 45444444444433
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.019 Score=41.15 Aligned_cols=53 Identities=9% Similarity=0.003 Sum_probs=25.9
Q ss_pred HHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHh
Q 007461 162 CVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKS 214 (603)
Q Consensus 162 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 214 (603)
|.+.++++.|.++++.+...+|.+...|......+.+.|++++|.+.|+...+
T Consensus 5 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 5 YLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444445555555555555544444
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.46 E-value=1.3 Score=45.68 Aligned_cols=347 Identities=11% Similarity=0.030 Sum_probs=161.9
Q ss_pred HHhCCCCCCHHHHHH-----HHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCc--HHHHHHHHHHHHhC
Q 007461 143 FKIYNVLPDAHTCSR-----LVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHM--YYSTILVYEKMKSA 215 (603)
Q Consensus 143 ~~~~~~~~~~~~~~~-----ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~m~~~ 215 (603)
+...|++.+..-|.. +++.+...+.+..|+++-..+.........+|.....-+.+..+ -+++++..++=...
T Consensus 423 ~~~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~ 502 (829)
T KOG2280|consen 423 DVRIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSA 502 (829)
T ss_pred ccccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccccHHHHHHHHHHHhccCccchHHHHHHHHHhcc
Confidence 345566666555544 45556667778888887776644322234566666666665532 22333333322222
Q ss_pred CCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-CCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCH
Q 007461 216 GIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLD-STPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEKGILEDP 294 (603)
Q Consensus 216 ~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 294 (603)
-. -+...|..+..-....|+.+-|..+++.=...+.. +--.+..-+..-+.-..+.|+.+-...++..|..+- +.
T Consensus 503 ~~-~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~---~~ 578 (829)
T KOG2280|consen 503 KL-TPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKL---NR 578 (829)
T ss_pred cC-CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHH---HH
Confidence 12 24456777777777888888888877643222110 000011224455666677777777777776665431 11
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHcC-CCCCHHHHH------HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhH
Q 007461 295 SIYASLICSFASITEVKLAEELFKEAEEKG-MLRDPEVCL------KLVLMYIEEGLVEKTLDVVESMKNAKLKISDCIS 367 (603)
Q Consensus 295 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~------~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 367 (603)
..|...+ .+.-.|..++.+..+.. ...-...|+ .+.....+.+ ..++.. .+..|+ .
T Consensus 579 s~l~~~l------~~~p~a~~lY~~~~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~------~~~~~~--~~r~~~---l 641 (829)
T KOG2280|consen 579 SSLFMTL------RNQPLALSLYRQFMRHQDRATLYDFYNQDDNHQALASFHLQAS------YAAETI--EGRIPA---L 641 (829)
T ss_pred HHHHHHH------HhchhhhHHHHHHHHhhchhhhhhhhhcccchhhhhhhhhhhh------hhhhhh--cccchh---H
Confidence 1111111 11122233333322210 000000000 0000000000 000000 000011 1
Q ss_pred HHHHHHHHhcCC----------HHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhh
Q 007461 368 CAIVNGFSKRRG----------YWAAVKVYEQLIS-QGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVA 436 (603)
Q Consensus 368 ~~li~~~~~~~~----------~~~a~~~~~~m~~-~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 436 (603)
....+.+.+... ..+-+++.+.+.. .|..-...+.+--+.-+...|+..+|.++-.+.+ -|+...
T Consensus 642 k~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~ 717 (829)
T KOG2280|consen 642 KTAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRL 717 (829)
T ss_pred HHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----Ccchhh
Confidence 111122222111 1112222222222 1222333344555555666677777766655443 455666
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 007461 437 YSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNR 516 (603)
Q Consensus 437 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 516 (603)
|-.-+.+++..+++++-+++-+.+. .+.-|.-...+|.+.|+.++|.+.+.+.. |.. -...+|.+
T Consensus 718 ~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~--~l~-------ekv~ay~~ 782 (829)
T KOG2280|consen 718 WWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRVG--GLQ-------EKVKAYLR 782 (829)
T ss_pred HHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhcccHHHHhhhhhccC--ChH-------HHHHHHHH
Confidence 6666777777777766655544433 24456666677777777777777766653 111 34556666
Q ss_pred cCCHHHHHHHHHH
Q 007461 517 AREFDMCVKFYNE 529 (603)
Q Consensus 517 ~g~~~~a~~~~~~ 529 (603)
.|++.+|.++--+
T Consensus 783 ~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 783 VGDVKEAADLAAE 795 (829)
T ss_pred hccHHHHHHHHHH
Confidence 7777766665443
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.024 Score=47.33 Aligned_cols=70 Identities=20% Similarity=0.184 Sum_probs=45.7
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHh-----CCCCCChhh
Q 007461 154 TCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKS-----AGIVLDSGC 223 (603)
Q Consensus 154 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~-----~~~~p~~~~ 223 (603)
+...++..+...|+++.|..+++.+...+|.+...|..+|.+|...|+...|++.|+.+.+ .|+.|+..+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 3444555666778888888888888887777888888888888888888888877776643 467776654
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.22 Score=48.66 Aligned_cols=66 Identities=6% Similarity=-0.034 Sum_probs=45.4
Q ss_pred CCCh-hchhHHHHHHhcCCCChHHHHHHHHHHhhCCCCCCCH----HhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 007461 77 VPDA-KKFDSFLHGMLKDPQTQELAYDYYNEAKKLPEFRPEK----STLKLLIRYLVQSKKWDSIVSLSEDFKIY 146 (603)
Q Consensus 77 ~p~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 146 (603)
.|+. ..++.+-..+...+++.+ |+..|+.+++. .|+. .+|..+..+|...|+.++|+..++...+.
T Consensus 71 dP~~a~a~~NLG~AL~~lGryeE-AIa~f~rALeL---~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 71 DVKTAEDAVNLGLSLFSKGRVKD-ALAQFETALEL---NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHH-HHHHHHHHHhh---CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3443 336667777777777766 88888877765 3442 34777777888888888888888877764
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.92 Score=43.05 Aligned_cols=282 Identities=12% Similarity=0.019 Sum_probs=169.9
Q ss_pred cCChHHHHHHHHHHHhcCCcchhhHHHHHhh--hhhcCcHHHHHHHHHHHHhCCCCCChhh--HHHHHHHHHHcCCHHHH
Q 007461 165 ARKFKIANTLLQVFITDGEIALLAFNSAMGG--YNKLHMYYSTILVYEKMKSAGIVLDSGC--YCQIMEAYYKIGDSEKV 240 (603)
Q Consensus 165 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~~m~~~~~~p~~~~--~~~ll~~~~~~g~~~~a 240 (603)
.|+-..|+++-.+-...-..|....-.|+.+ -.-.|+++.|.+-|+.|... |.... ...|.-.--+.|+.+.|
T Consensus 97 AGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaA 173 (531)
T COG3898 97 AGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAA 173 (531)
T ss_pred cCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHH
Confidence 4566666665555433222344444444433 34567788888888888752 22111 22233334467888888
Q ss_pred HHHHHHHHhCCCCCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHC-CCCCCHH--HHHHHHHHHHc---cCCHHHHH
Q 007461 241 AALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEK-GILEDPS--IYASLICSFAS---ITEVKLAE 314 (603)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~--~~~~ll~~~~~---~g~~~~a~ 314 (603)
...-+..-...+.. ...+...+...+..|+++.|+++++.-+.. -+.++.. .-..|+.+-+. ..+...|+
T Consensus 174 r~yAe~Aa~~Ap~l----~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar 249 (531)
T COG3898 174 RHYAERAAEKAPQL----PWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASAR 249 (531)
T ss_pred HHHHHHHHhhccCC----chHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHH
Confidence 88877776655443 246888888888888888888888776543 2344432 22333333221 23556666
Q ss_pred HHHHHHHHcCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 007461 315 ELFKEAEEKGMLRDPE-VCLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLISQ 393 (603)
Q Consensus 315 ~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 393 (603)
..-.+..+. .||.. ....-...+.+.|++.++-.+++.+=+..+.|+. ..+..+.+.|+ .++.-+++..+.
T Consensus 250 ~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~i----a~lY~~ar~gd--ta~dRlkRa~~L 321 (531)
T COG3898 250 DDALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDI----ALLYVRARSGD--TALDRLKRAKKL 321 (531)
T ss_pred HHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHH----HHHHHHhcCCC--cHHHHHHHHHHH
Confidence 665555543 34422 2223456788899999999999998888877753 22233344444 333333332221
Q ss_pred -CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHc-cCCHHHHHHHHHHHHHc
Q 007461 394 -GCIP-GQVTYASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGK-TGRIRDAMWLVAKMKAK 463 (603)
Q Consensus 394 -g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~ 463 (603)
.++| +..+...+..+-...|++..|..--+...+. .|....|..|.+.-.. .|+-.++...+.+..+.
T Consensus 322 ~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~--~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 322 ESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAARE--APRESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred HhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhh--CchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 1233 4456666777777888888887766666554 6777778777776554 48999999888887764
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.024 Score=40.59 Aligned_cols=58 Identities=9% Similarity=0.059 Sum_probs=33.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCC
Q 007461 125 RYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGE 183 (603)
Q Consensus 125 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 183 (603)
..+.+.++++.|+++++.+...+ +.+...+......+.+.|++++|...|+.+.+..|
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 34555666666666666666554 34455555555556666666666666666655544
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.041 Score=45.60 Aligned_cols=85 Identities=7% Similarity=-0.101 Sum_probs=55.1
Q ss_pred ccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCHHHHHHH
Q 007461 164 RARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAAL 243 (603)
Q Consensus 164 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~ 243 (603)
..|++++|..+|+-+...++.+..-|..|...+-..+++++|+..|......+.. |+..+-.....|...|+.+.|+..
T Consensus 49 ~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~-dp~p~f~agqC~l~l~~~~~A~~~ 127 (165)
T PRK15331 49 NQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN-DYRPVFFTGQCQLLMRKAAKARQC 127 (165)
T ss_pred HCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC-CCCccchHHHHHHHhCCHHHHHHH
Confidence 4567777777777666666666666666666666677777777776655544332 444455566667777777777777
Q ss_pred HHHHHh
Q 007461 244 FLECKS 249 (603)
Q Consensus 244 ~~~~~~ 249 (603)
|+....
T Consensus 128 f~~a~~ 133 (165)
T PRK15331 128 FELVNE 133 (165)
T ss_pred HHHHHh
Confidence 766655
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.062 Score=43.05 Aligned_cols=80 Identities=16% Similarity=0.120 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHH---------------HcCCCcCHhhHHHHHHHHHccCCHHHHHHHHHHHHHc-
Q 007461 400 VTYASIINAYCRIALYSKAEKVFIEMQ---------------QKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAK- 463 (603)
Q Consensus 400 ~~~~~ll~~~~~~g~~~~a~~~~~~~~---------------~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~- 463 (603)
.++..+|.++++.|+++....+++..= .....|+..+..+++.+|+..|++..|+++++...+.
T Consensus 3 ~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y 82 (126)
T PF12921_consen 3 ELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKY 82 (126)
T ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHc
Confidence 344455555555555555544443321 1123455555555555555555565555555555443
Q ss_pred CCCCCHhHHHHHHHHH
Q 007461 464 GCEPNVWIYNSLMDMH 479 (603)
Q Consensus 464 ~~~p~~~~~~~li~~~ 479 (603)
+++.+..+|..|+.-.
T Consensus 83 ~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 83 PIPIPKEFWRRLLEWA 98 (126)
T ss_pred CCCCCHHHHHHHHHHH
Confidence 4444555555555443
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.057 Score=45.06 Aligned_cols=70 Identities=7% Similarity=0.134 Sum_probs=39.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh-----CCCCCCHHHH
Q 007461 507 YTTVISAYNRAREFDMCVKFYNEFRMNGGVIDRAIAGIMVGVFSKLSQIEELVKLLQDMKS-----EGTKLDERLY 577 (603)
Q Consensus 507 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~g~~~~~~~~ 577 (603)
...++..+...|++++|.++.+.+....+- |...|..+|.+|.+.|+..+|.+.|+++.+ .|+.|+..+-
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~-~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALDPY-DEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHSTT--HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 444555566667777777777776665332 556667777777777777777777665533 2666665543
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.47 Score=37.48 Aligned_cols=59 Identities=17% Similarity=0.265 Sum_probs=22.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcC
Q 007461 405 IINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKG 464 (603)
Q Consensus 405 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 464 (603)
.+..+...|+-++-.+++..+.+.+ .+++...-.+..+|.+.|+..++.+++.+.-+.|
T Consensus 92 ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 92 ALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 3344444444444444444443322 3334444444444444444444444444444443
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.56 Score=38.69 Aligned_cols=124 Identities=10% Similarity=0.147 Sum_probs=57.8
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 007461 439 SMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNRAR 518 (603)
Q Consensus 439 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 518 (603)
.++..+...+.......+++.+...+ ..+...++.++..|++.+ ..+....++. .++......+++.|.+.+
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~~ 83 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKAK 83 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHcC
Confidence 34444444555555555555555543 244455555555555442 2222333221 112233344555566666
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc-CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 007461 519 EFDMCVKFYNEFRMNGGVIDRAIAGIMVGVFSKL-SQIEELVKLLQDMKSEGTKLDERLYHSAMNALR 585 (603)
Q Consensus 519 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~a~~ 585 (603)
.++++..++.++.. +...+..+... ++.+.|.+++++- .+...|..++..+.
T Consensus 84 l~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~~------~~~~lw~~~~~~~l 136 (140)
T smart00299 84 LYEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVKQ------NNPELWAEVLKALL 136 (140)
T ss_pred cHHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHhC------CCHHHHHHHHHHHH
Confidence 66666666655422 11122222222 5566666655541 23445555555543
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.12 Score=41.31 Aligned_cols=97 Identities=9% Similarity=0.072 Sum_probs=53.6
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 007461 468 NVWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNRAREFDMCVKFYNEFRMNGGVIDRAIAGIMVG 547 (603)
Q Consensus 468 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 547 (603)
|..++..+|.++++.|+.+....+++..= |+.++... ..+. --......|+..+..+++.
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~W--gI~~~~~~---------~~~~---------~~~~spl~Pt~~lL~AIv~ 60 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVW--GIDVNGKK---------KEGD---------YPPSSPLYPTSRLLIAIVH 60 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhc--CCCCCCcc---------ccCc---------cCCCCCCCCCHHHHHHHHH
Confidence 44567777777777777777777776653 22221100 0000 0111223466666666666
Q ss_pred HHHccCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHH
Q 007461 548 VFSKLSQIEELVKLLQDMKSE-GTKLDERLYHSAMNAL 584 (603)
Q Consensus 548 ~~~~~g~~~~A~~~~~~m~~~-g~~~~~~~~~~ll~a~ 584 (603)
+|+..|++..|+++++...+. +++.+..+|..|++-+
T Consensus 61 sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 61 SFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred HHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 666666666666666665554 5555566666666543
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.021 Score=41.56 Aligned_cols=61 Identities=16% Similarity=0.287 Sum_probs=36.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC-CC-HHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 007461 506 SYTTVISAYNRAREFDMCVKFYNEFRMN----GGV-ID-RAIAGIMVGVFSKLSQIEELVKLLQDMK 566 (603)
Q Consensus 506 ~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~-~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 566 (603)
+++.+...|...|++++|+..|++..+. |.. |+ ..++..+..+|...|++++|++.+++..
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4666666667777777777777666532 111 11 2355666667777777777777776654
|
... |
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.64 Score=36.76 Aligned_cols=64 Identities=19% Similarity=0.252 Sum_probs=31.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCC
Q 007461 506 SYTTVISAYNRAREFDMCVKFYNEFRMNGGVIDRAIAGIMVGVFSKLSQIEELVKLLQDMKSEGT 570 (603)
Q Consensus 506 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 570 (603)
.+...+......|+-+.-.++++++.+ +-.+++...-.+..+|.+.|+..++.+++++.-+.|+
T Consensus 88 ~vD~ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 88 YVDLALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 344445555555555555555555544 2334555555555566666666666666665555554
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.88 E-value=1.7 Score=41.37 Aligned_cols=287 Identities=11% Similarity=0.003 Sum_probs=160.8
Q ss_pred cCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH--HcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccCCHH
Q 007461 199 LHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYY--KIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAF 276 (603)
Q Consensus 199 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~--~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 276 (603)
.|+-..|.++-.+-.+. +..|..-...++.+-. -.|+.+.|.+-|+.|....-.. ..-...|.-.--+.|..+
T Consensus 97 AGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~dPEtR----llGLRgLyleAqr~Gare 171 (531)
T COG3898 97 AGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDDPETR----LLGLRGLYLEAQRLGARE 171 (531)
T ss_pred cCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcChHHH----HHhHHHHHHHHHhcccHH
Confidence 45666666665544321 2334445555555433 3588888888888886532110 011222333334567777
Q ss_pred HHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHHcC-CCCCHHH--HHHHHHHHH---HcCCHHHHH
Q 007461 277 EALKFFRDMKEKGILED-PSIYASLICSFASITEVKLAEELFKEAEEKG-MLRDPEV--CLKLVLMYI---EEGLVEKTL 349 (603)
Q Consensus 277 ~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~--~~~l~~~~~---~~g~~~~a~ 349 (603)
.|...-++.-.. -|. .-.....+...+..|+++.|.++++.-.... +.++..- -..|+.+-. -.-+...|.
T Consensus 172 aAr~yAe~Aa~~--Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar 249 (531)
T COG3898 172 AARHYAERAAEK--APQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASAR 249 (531)
T ss_pred HHHHHHHHHHhh--ccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHH
Confidence 777777666554 332 3456777888888888888888887766543 2333221 112222111 112344455
Q ss_pred HHHHHHHhCCCCCCHh-hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 007461 350 DVVESMKNAKLKISDC-ISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQK 428 (603)
Q Consensus 350 ~~~~~~~~~~~~~~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 428 (603)
+.-.+..+.. |+-. .-..-..++.+.|+..++-.+++.+-+....|+.. .+-...+.|+ .+..-++...+.
T Consensus 250 ~~A~~a~KL~--pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia----~lY~~ar~gd--ta~dRlkRa~~L 321 (531)
T COG3898 250 DDALEANKLA--PDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIA----LLYVRARSGD--TALDRLKRAKKL 321 (531)
T ss_pred HHHHHHhhcC--CccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHH----HHHHHhcCCC--cHHHHHHHHHHH
Confidence 4444433322 2211 12334567788888888888888888775555432 1222334443 333333333221
Q ss_pred -CC-CcCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhc-CCHHHHHHHHHHHHhCCCCC
Q 007461 429 -GF-DKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRA-KNLRQVEKLWKEMERRKVTP 502 (603)
Q Consensus 429 -~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~~~~p 502 (603)
.. +.+......+..+-...|++..|..--+.... ..|....|..|.+.-... |+-.++...+.+.++.--.|
T Consensus 322 ~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~APrdP 396 (531)
T COG3898 322 ESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKAPRDP 396 (531)
T ss_pred HhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCCCCC
Confidence 11 33455666677777778888877776666655 367777787777765544 88888888888777653333
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.87 Score=37.54 Aligned_cols=40 Identities=8% Similarity=0.147 Sum_probs=16.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 007461 123 LIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCV 163 (603)
Q Consensus 123 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 163 (603)
++..+.+.+....+..+++.+...+ ..+...++.++..|+
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~ 52 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYA 52 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHH
Confidence 3333433444444444444444333 233333444444443
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.81 E-value=1.4 Score=39.71 Aligned_cols=58 Identities=21% Similarity=0.078 Sum_probs=27.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 007461 227 IMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDM 285 (603)
Q Consensus 227 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 285 (603)
+.+.|.+.|.+..|..-+++|.+.- ..++......-.+..+|...|-.++|.+.-+-+
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~y-~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl 230 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLENY-PDTSAVREALARLEEAYYALGLTDEAKKTAKVL 230 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhcc-ccccchHHHHHHHHHHHHHhCChHHHHHHHHHH
Confidence 3445555555555555555555542 112222234444445555555555554444333
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.15 Score=42.32 Aligned_cols=93 Identities=13% Similarity=0.031 Sum_probs=78.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCc
Q 007461 122 LLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHM 201 (603)
Q Consensus 122 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 201 (603)
...--+...|++++|..+|+-+...+ .-+..-|..|...+-..++++.|...|......+..|+..+-.....|...|+
T Consensus 42 ~~Ay~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~ 120 (165)
T PRK15331 42 AHAYEFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRK 120 (165)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCC
Confidence 34555667999999999999998876 34555667777777788999999999999888878888888899999999999
Q ss_pred HHHHHHHHHHHHhC
Q 007461 202 YYSTILVYEKMKSA 215 (603)
Q Consensus 202 ~~~a~~~~~~m~~~ 215 (603)
.+.|...|+...+.
T Consensus 121 ~~~A~~~f~~a~~~ 134 (165)
T PRK15331 121 AAKARQCFELVNER 134 (165)
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999988873
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=95.58 E-value=0.38 Score=47.03 Aligned_cols=66 Identities=14% Similarity=0.001 Sum_probs=51.3
Q ss_pred CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-H---HHHHHHHHHHHccCChHHHHHHHHHHHhc
Q 007461 114 RPEKSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPD-A---HTCSRLVASCVRARKFKIANTLLQVFITD 181 (603)
Q Consensus 114 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 181 (603)
+.+...++.+..+|.+.|++++|+..|+...+.+ |+ . .+|..+..+|...|+.++|++.+++..+.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~--Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELN--PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 5567788888999999999999999998888765 44 2 34777777788888888888887777663
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=95.56 E-value=0.04 Score=40.04 Aligned_cols=63 Identities=14% Similarity=0.280 Sum_probs=27.7
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHhCC--CCCCCc-cHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 007461 223 CYCQIMEAYYKIGDSEKVAALFLECKSRK--LDSTPF-STHMYKILCDSLGKSGRAFEALKFFRDM 285 (603)
Q Consensus 223 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m 285 (603)
+++.+...|...|++++|+..|++..... ..+..+ ...+++.+...+...|++++|++.+++.
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~a 72 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKA 72 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34444445555555555555554443220 000111 1334555555555555555555555544
|
... |
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.19 Score=45.20 Aligned_cols=88 Identities=14% Similarity=0.199 Sum_probs=52.0
Q ss_pred CCCHHHHHHHHHHHHh-----cCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCC----------------HHHHH
Q 007461 396 IPGQVTYASIINAYCR-----IALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGR----------------IRDAM 454 (603)
Q Consensus 396 ~p~~~~~~~ll~~~~~-----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----------------~~~A~ 454 (603)
+-|..+|...+..+.. .+.++-....++.|.+.|+..|..+|+.|+..+-|..- -+-++
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I 143 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAI 143 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHH
Confidence 3456666666666543 34556666667777788888888888888877655321 11244
Q ss_pred HHHHHHHHcCCCCCHhHHHHHHHHHHhcC
Q 007461 455 WLVAKMKAKGCEPNVWIYNSLMDMHGRAK 483 (603)
Q Consensus 455 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g 483 (603)
+++++|...|+.||..+-..|+.++++.+
T Consensus 144 ~vLeqME~hGVmPdkE~e~~lvn~FGr~~ 172 (406)
T KOG3941|consen 144 KVLEQMEWHGVMPDKEIEDILVNAFGRWN 172 (406)
T ss_pred HHHHHHHHcCCCCchHHHHHHHHHhcccc
Confidence 55555555555555555555555555444
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.34 Score=48.44 Aligned_cols=159 Identities=14% Similarity=0.117 Sum_probs=83.2
Q ss_pred HHHHhcCCHHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCCH
Q 007461 372 NGFSKRRGYWAAVKVYEQLI-SQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRI 450 (603)
Q Consensus 372 ~~~~~~~~~~~a~~~~~~m~-~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 450 (603)
....-.++++++.++.+.-. -..+ +..-.+.++.-+-+.|..+.|+++-..-. .-.....+.|++
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll~~i--~~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L 334 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLLPNI--PKDQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNL 334 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-H
T ss_pred HHHHHcCChhhhhhhhhhhhhcccC--ChhHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCH
Confidence 33445666666666664111 1111 13345666666667777777666543321 112334566777
Q ss_pred HHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007461 451 RDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNRAREFDMCVKFYNEF 530 (603)
Q Consensus 451 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 530 (603)
+.|.++.++. ++...|..|.+...+.|+++-|++.|.+.. | |..|+-.|.-.|+.+.-.++.+..
T Consensus 335 ~~A~~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~------d---~~~L~lLy~~~g~~~~L~kl~~~a 399 (443)
T PF04053_consen 335 DIALEIAKEL------DDPEKWKQLGDEALRQGNIELAEECYQKAK------D---FSGLLLLYSSTGDREKLSKLAKIA 399 (443)
T ss_dssp HHHHHHCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhc------C---ccccHHHHHHhCCHHHHHHHHHHH
Confidence 7776655432 356677777777777777777777777653 1 345555566667776666666666
Q ss_pred HHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 007461 531 RMNGGVIDRAIAGIMVGVFSKLSQIEELVKLLQDM 565 (603)
Q Consensus 531 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 565 (603)
...|- ++....++.-.|+.++..+++.+-
T Consensus 400 ~~~~~------~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 400 EERGD------INIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp HHTT-------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred HHccC------HHHHHHHHHHcCCHHHHHHHHHHc
Confidence 55432 344444555567777777666543
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.45 E-value=0.14 Score=46.00 Aligned_cols=97 Identities=16% Similarity=0.092 Sum_probs=70.5
Q ss_pred CCHhhHHHHHHHHHhc-----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC----------------hHHHHH
Q 007461 362 ISDCISCAIVNGFSKR-----RGYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIAL----------------YSKAEK 420 (603)
Q Consensus 362 ~~~~~~~~li~~~~~~-----~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~----------------~~~a~~ 420 (603)
-|-.+|-..+..+... +..+-.-..++.|.+-|+.-|..+|+.|++.+-+..- -+-+++
T Consensus 65 RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~ 144 (406)
T KOG3941|consen 65 RDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIK 144 (406)
T ss_pred ccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHH
Confidence 3555677777776543 4566666677888889999999999999988766431 234778
Q ss_pred HHHHHHHcCCCcCHhhHHHHHHHHHccCCHHHHHHHHHHHH
Q 007461 421 VFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMK 461 (603)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 461 (603)
++++|...|+.||..+-..|+++++ +..-...-+.+|.
T Consensus 145 vLeqME~hGVmPdkE~e~~lvn~FG---r~~~p~~K~~Rm~ 182 (406)
T KOG3941|consen 145 VLEQMEWHGVMPDKEIEDILVNAFG---RWNFPTKKVKRML 182 (406)
T ss_pred HHHHHHHcCCCCchHHHHHHHHHhc---cccccHHHHHHHH
Confidence 8899999999999998888888874 4556655555543
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=95.44 E-value=0.25 Score=49.40 Aligned_cols=133 Identities=14% Similarity=0.097 Sum_probs=96.6
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhh
Q 007461 117 KSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGY 196 (603)
Q Consensus 117 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 196 (603)
....+.++..+-+.|..+.|+++..+-. .-.....+.|+++.|.++.++ ..+...|..|....
T Consensus 295 ~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L~~A~~~a~~-----~~~~~~W~~Lg~~A 357 (443)
T PF04053_consen 295 KDQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNLDIALEIAKE-----LDDPEKWKQLGDEA 357 (443)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-HHHHHHHCCC-----CSTHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCHHHHHHHHHh-----cCcHHHHHHHHHHH
Confidence 5568888899999999999988765432 223445678899888876443 24677899999999
Q ss_pred hhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccCCHH
Q 007461 197 NKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAF 276 (603)
Q Consensus 197 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 276 (603)
.+.|+++-|.+.|.+..+ +..|+-.|.-.|+.+...++.+....++. +|....++...|+.+
T Consensus 358 L~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~---------~n~af~~~~~lgd~~ 419 (443)
T PF04053_consen 358 LRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERGD---------INIAFQAALLLGDVE 419 (443)
T ss_dssp HHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT----------HHHHHHHHHHHT-HH
T ss_pred HHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHccC---------HHHHHHHHHHcCCHH
Confidence 999999999999887543 66777788888998888888877776653 677777777788888
Q ss_pred HHHHHHHH
Q 007461 277 EALKFFRD 284 (603)
Q Consensus 277 ~A~~~~~~ 284 (603)
+..+++.+
T Consensus 420 ~cv~lL~~ 427 (443)
T PF04053_consen 420 ECVDLLIE 427 (443)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88877654
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=95.29 E-value=1.4 Score=44.79 Aligned_cols=162 Identities=9% Similarity=0.112 Sum_probs=89.1
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcC-CCcC-----HhhHHHHHHHHHc----cCCHHHHHHHHHHHHHcCCCCCHhHH
Q 007461 403 ASIINAYCRIALYSKAEKVFIEMQQKG-FDKC-----VVAYSSMVAMYGK----TGRIRDAMWLVAKMKAKGCEPNVWIY 472 (603)
Q Consensus 403 ~~ll~~~~~~g~~~~a~~~~~~~~~~~-~~~~-----~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~ 472 (603)
..++....-.|+-+.+.+.+.+..+.+ +.-. .-.|..++..++- ....+.|.++++.+.+. -|+...|
T Consensus 192 ~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~lf 269 (468)
T PF10300_consen 192 LKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSALF 269 (468)
T ss_pred HHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHHH
Confidence 444555555566666666666554432 1111 1223333333332 34567777788777765 5665555
Q ss_pred HHHH-HHHHhcCCHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH-HH
Q 007461 473 NSLM-DMHGRAKNLRQVEKLWKEMERRK---VTPDKVSYTTVISAYNRAREFDMCVKFYNEFRMNGGVIDRAIAGIM-VG 547 (603)
Q Consensus 473 ~~li-~~~~~~g~~~~a~~~~~~m~~~~---~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~ 547 (603)
...- +.+...|++++|.+.|++..... .+.....+--+...+...++|++|.+.|..+.+..-- ...+|.-+ ..
T Consensus 270 l~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~W-Ska~Y~Y~~a~ 348 (468)
T PF10300_consen 270 LFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKW-SKAFYAYLAAA 348 (468)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcccc-HHHHHHHHHHH
Confidence 4332 34556778888888887654311 1112234555556667777888888888887764322 33344322 22
Q ss_pred HHHccCCH-------HHHHHHHHHHHh
Q 007461 548 VFSKLSQI-------EELVKLLQDMKS 567 (603)
Q Consensus 548 ~~~~~g~~-------~~A~~~~~~m~~ 567 (603)
++...|+. ++|.+++++...
T Consensus 349 c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 349 CLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 44456666 777777766543
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=95.20 E-value=2 Score=42.35 Aligned_cols=112 Identities=9% Similarity=-0.084 Sum_probs=63.2
Q ss_pred hHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 007461 168 FKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLEC 247 (603)
Q Consensus 168 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 247 (603)
..+|.++.+...+.++.|..+...+..+..-.++++.|..+|++....+.. ...+|......+.-.|+.++|.+.+++.
T Consensus 320 ~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn-~A~~~~~~~~~~~~~G~~~~a~~~i~~a 398 (458)
T PRK11906 320 AQKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTD-IASLYYYRALVHFHNEKIEEARICIDKS 398 (458)
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCc-cHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 345566666666666667777666666666666677777777776664322 3334444455555567777777777665
Q ss_pred HhCCCCCCCccHHHHHHHHHHHhccCCHHHHHHHHH
Q 007461 248 KSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFR 283 (603)
Q Consensus 248 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 283 (603)
.+.++... -.......++.|+..+ .++|+++|-
T Consensus 399 lrLsP~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~ 431 (458)
T PRK11906 399 LQLEPRRR--KAVVIKECVDMYVPNP-LKNNIKLYY 431 (458)
T ss_pred hccCchhh--HHHHHHHHHHHHcCCc-hhhhHHHHh
Confidence 44433221 1223333444555444 455555553
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=95.17 E-value=3.4 Score=40.26 Aligned_cols=433 Identities=9% Similarity=0.044 Sum_probs=228.0
Q ss_pred cCCCChHHHHHHHHHHhhCCCCCCC----HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH--HHcc
Q 007461 92 KDPQTQELAYDYYNEAKKLPEFRPE----KSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVAS--CVRA 165 (603)
Q Consensus 92 ~~~~~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~--~~~~ 165 (603)
++++..+ |-++|.+.-+...-.|. ...-+.++++|... +.+.....+....+.. | ...|..+..+ +-+.
T Consensus 18 kq~~~~e-sEkifskI~~e~~~~~f~lkeEvl~grilnAffl~-nld~Me~~l~~l~~~~--~-~s~~l~LF~~L~~Y~~ 92 (549)
T PF07079_consen 18 KQKKFQE-SEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLN-NLDLMEKQLMELRQQF--G-KSAYLPLFKALVAYKQ 92 (549)
T ss_pred HHhhhhH-HHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHh-hHHHHHHHHHHHHHhc--C-CchHHHHHHHHHHHHh
Confidence 4455544 77777666543211111 22344566776644 4555555555555442 3 2333344433 4467
Q ss_pred CChHHHHHHHHHHHhcCC----c--ch---------hhHHHHHhhhhhcCcHHHHHHHHHHHHhCC----CCCChhhHHH
Q 007461 166 RKFKIANTLLQVFITDGE----I--AL---------LAFNSAMGGYNKLHMYYSTILVYEKMKSAG----IVLDSGCYCQ 226 (603)
Q Consensus 166 ~~~~~a~~~~~~~~~~~~----~--~~---------~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~----~~p~~~~~~~ 226 (603)
+.+..|.+.+......-. + +. .-=+..+..+...|++.+++.++++|...= ..-+..+|+.
T Consensus 93 k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~ 172 (549)
T PF07079_consen 93 KEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDR 172 (549)
T ss_pred hhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHH
Confidence 888888888776654411 1 11 222455677888999999999888887642 3367788888
Q ss_pred HHHHHHHcCC---------------HHHHHHHHHHHHhCCC------CCCCccHHHHHHHHHHHhcc--CCHHHHHHHHH
Q 007461 227 IMEAYYKIGD---------------SEKVAALFLECKSRKL------DSTPFSTHMYKILCDSLGKS--GRAFEALKFFR 283 (603)
Q Consensus 227 ll~~~~~~g~---------------~~~a~~~~~~~~~~~~------~~~~~~~~~~~~li~~~~~~--g~~~~A~~~~~ 283 (603)
++-.+.+.=- ++.+.-..++|...+. .|. ......++....-. .+..--.+++.
T Consensus 173 ~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~pe---eeL~s~imqhlfi~p~e~l~~~mq~l~ 249 (549)
T PF07079_consen 173 AVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPE---EELFSTIMQHLFIVPKERLPPLMQILE 249 (549)
T ss_pred HHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcH---HHHHHHHHHHHHhCCHhhccHHHHHHH
Confidence 6666654311 1122222222222111 110 01111111111111 11112223333
Q ss_pred HHHHCCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 007461 284 DMKEKGILEDPS-IYASLICSFASITEVKLAEELFKEAEEKGMLR----DPEVCLKLVLMYIEEGLVEKTLDVVESMKNA 358 (603)
Q Consensus 284 ~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 358 (603)
.....-+.|+.. ....++..+.. +.+++..+-+.+....+.+ -..++..++....+.++...|...+.-+.-.
T Consensus 250 ~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~l 327 (549)
T PF07079_consen 250 NWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKIL 327 (549)
T ss_pred HHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Confidence 333334555532 23334444433 5555555555444332111 2346777788888899999998888877765
Q ss_pred CCCCCHhh-----HHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHH-HHHHH---HHHHhcCC-hHHHHHHHHH
Q 007461 359 KLKISDCI-----SCAIVNGFSK----RRGYWAAVKVYEQLISQGCIPGQVT-YASII---NAYCRIAL-YSKAEKVFIE 424 (603)
Q Consensus 359 ~~~~~~~~-----~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~-~~~ll---~~~~~~g~-~~~a~~~~~~ 424 (603)
++..+..- -..+-+..+. .-+...=+.+|+.....++ |..- ...++ .-+-+.|. -++|..+++.
T Consensus 328 dp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~Di--DrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~ 405 (549)
T PF07079_consen 328 DPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDI--DRQQLVHYLVFGAKHLWEIGQCDEKALNLLKL 405 (549)
T ss_pred CCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcc--cHHHHHHHHHHHHHHHHhcCCccHHHHHHHHH
Confidence 54332110 0111122221 1112333445555554432 2211 11222 23445555 7889999998
Q ss_pred HHHcCCCcCHhhHHHHHH----HHHc---cCCHHHHHHHHHHHHHcCCCCC----HhHHHHHHHH--HHhcCCHHHHHHH
Q 007461 425 MQQKGFDKCVVAYSSMVA----MYGK---TGRIRDAMWLVAKMKAKGCEPN----VWIYNSLMDM--HGRAKNLRQVEKL 491 (603)
Q Consensus 425 ~~~~~~~~~~~~~~~li~----~~~~---~g~~~~A~~~~~~m~~~~~~p~----~~~~~~li~~--~~~~g~~~~a~~~ 491 (603)
+.+-. +-|...-|.+.. .|.. ...+.+-.++-+-+.+.|+.|- ...-|.|.++ +..+|++.++.-.
T Consensus 406 il~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~y 484 (549)
T PF07079_consen 406 ILQFT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLY 484 (549)
T ss_pred HHHhc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 88753 334433333322 2221 2234444444455566677763 3344555544 4568999998876
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 007461 492 WKEMERRKVTPDKVSYTTVISAYNRAREFDMCVKFYNEFRMNGGVIDRAIAGI 544 (603)
Q Consensus 492 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 544 (603)
-..+. .+.|...+|..+.-+.....++++|..++..+ +|+..+++.
T Consensus 485 s~WL~--~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L-----P~n~~~~ds 530 (549)
T PF07079_consen 485 SSWLT--KIAPSPQAYRLLGLCLMENKRYQEAWEYLQKL-----PPNERMRDS 530 (549)
T ss_pred HHHHH--HhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC-----CCchhhHHH
Confidence 66666 57899999999999999999999999999874 456666654
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.12 E-value=1.9 Score=37.57 Aligned_cols=29 Identities=28% Similarity=0.266 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 007461 295 SIYASLICSFASITEVKLAEELFKEAEEK 323 (603)
Q Consensus 295 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 323 (603)
.||--+.+-+...|++++|..+|+..+..
T Consensus 238 EtyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 238 ETYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 45666666666666666666666666554
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.11 E-value=2.1 Score=39.29 Aligned_cols=122 Identities=13% Similarity=0.021 Sum_probs=65.5
Q ss_pred HHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCHHHHH
Q 007461 162 CVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVA 241 (603)
Q Consensus 162 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~ 241 (603)
....|++.+|..+|+......+.+..+--.+..+|...|+.+.|..++..+...--.........-+..+.+.....+..
T Consensus 144 ~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~~ 223 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEIQ 223 (304)
T ss_pred hhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCHH
Confidence 44566777777777777666666666666677777777777777777766654321111112112233333333333222
Q ss_pred HHHHHHHhCCCCCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 007461 242 ALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEK 288 (603)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 288 (603)
.+-..... ++.|...--.+...+...|+.++|++.+-.+.++
T Consensus 224 ~l~~~~aa-----dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~ 265 (304)
T COG3118 224 DLQRRLAA-----DPDDVEAALALADQLHLVGRNEAALEHLLALLRR 265 (304)
T ss_pred HHHHHHHh-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 22222211 1123345556667777777777777766555443
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.08 E-value=0.063 Score=33.74 Aligned_cols=38 Identities=16% Similarity=0.009 Sum_probs=19.0
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHH
Q 007461 155 CSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSA 192 (603)
Q Consensus 155 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l 192 (603)
+..+...|.+.|++++|+++|+++.+..|.+..+|..+
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~L 41 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRAL 41 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHh
Confidence 33444455555555555555555555555444444443
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=95.06 E-value=1.2 Score=45.38 Aligned_cols=129 Identities=12% Similarity=-0.012 Sum_probs=59.6
Q ss_pred HHHHHHccCChHHHHHHHHHHHhcCC-cc------hhhHHHHHhhhhh----cCcHHHHHHHHHHHHhCCCCCChhhHHH
Q 007461 158 LVASCVRARKFKIANTLLQVFITDGE-IA------LLAFNSAMGGYNK----LHMYYSTILVYEKMKSAGIVLDSGCYCQ 226 (603)
Q Consensus 158 ll~~~~~~~~~~~a~~~~~~~~~~~~-~~------~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~ 226 (603)
++....=.||-+.+++++....+.+. .. .-.|+.++..+.. ....+.|.++++.+.+. -|+...|..
T Consensus 194 ll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~lfl~ 271 (468)
T PF10300_consen 194 LLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSALFLF 271 (468)
T ss_pred HHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHHHHH
Confidence 33333344566666666665544332 11 1233333333222 23455566666666554 344444432
Q ss_pred -HHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 007461 227 -IMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEK 288 (603)
Q Consensus 227 -ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 288 (603)
-.+.+...|++++|.+.|+........-.+.....+-.+.-.+.-..++++|.+.|..+.+.
T Consensus 272 ~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~ 334 (468)
T PF10300_consen 272 FEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKE 334 (468)
T ss_pred HHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhc
Confidence 23444555666666666665432111111111223344444555556666666666666543
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.00 E-value=0.46 Score=45.37 Aligned_cols=91 Identities=12% Similarity=-0.006 Sum_probs=49.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhC-----CCCC---------CHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhH
Q 007461 124 IRYLVQSKKWDSIVSLSEDFKIY-----NVLP---------DAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAF 189 (603)
Q Consensus 124 ~~~~~~~~~~~~a~~~~~~~~~~-----~~~~---------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 189 (603)
...+.+.|++..|..-|+..... +..+ -..+++-+...+.+.+++..|+......+..++.++-+.
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KAL 294 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKAL 294 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHH
Confidence 34677888888888888876532 1111 112333344444455555555555555555555555555
Q ss_pred HHHHhhhhhcCcHHHHHHHHHHHHh
Q 007461 190 NSAMGGYNKLHMYYSTILVYEKMKS 214 (603)
Q Consensus 190 ~~l~~~~~~~~~~~~a~~~~~~m~~ 214 (603)
---..+|...|+++.|+..|+++.+
T Consensus 295 yRrG~A~l~~~e~~~A~~df~ka~k 319 (397)
T KOG0543|consen 295 YRRGQALLALGEYDLARDDFQKALK 319 (397)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHH
Confidence 5555555555555555555555554
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.94 E-value=0.72 Score=42.76 Aligned_cols=161 Identities=8% Similarity=-0.095 Sum_probs=113.9
Q ss_pred HhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhHH----HHHHHHHHhcCCH
Q 007461 410 CRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIY----NSLMDMHGRAKNL 485 (603)
Q Consensus 410 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~----~~li~~~~~~g~~ 485 (603)
-..|+..+|-..++++.+. .+.|...+.-.=++|.-.|+.+.-...++++... ..||...| ..+.-++...|-+
T Consensus 114 ~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred hccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccc
Confidence 4568888888889888876 5788888888888999999999999999888764 34454333 3344455678999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-C---CHHHHHHHHHHHHccCCHHHHHHH
Q 007461 486 RQVEKLWKEMERRKVTPDKVSYTTVISAYNRAREFDMCVKFYNEFRMNGGV-I---DRAIAGIMVGVFSKLSQIEELVKL 561 (603)
Q Consensus 486 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-~---~~~~~~~l~~~~~~~g~~~~A~~~ 561 (603)
++|++.-++..+.+ +.|.-.-.++...+...|+..++.++..+-... .. . -...|-...-.+...+.++.|+++
T Consensus 192 ~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~-Wr~s~mlasHNyWH~Al~~iE~aeye~aleI 269 (491)
T KOG2610|consen 192 DDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDD-WRQSWMLASHNYWHTALFHIEGAEYEKALEI 269 (491)
T ss_pred hhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccc-hhhhhHHHhhhhHHHHHhhhcccchhHHHHH
Confidence 99999999987653 335566677777888889999999987764332 11 1 112233444456667999999999
Q ss_pred HHH-HHhCCCCCCH
Q 007461 562 LQD-MKSEGTKLDE 574 (603)
Q Consensus 562 ~~~-m~~~g~~~~~ 574 (603)
|++ |.++--+.|.
T Consensus 270 yD~ei~k~l~k~Da 283 (491)
T KOG2610|consen 270 YDREIWKRLEKDDA 283 (491)
T ss_pred HHHHHHHHhhccch
Confidence 985 4444334444
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.89 E-value=0.41 Score=43.27 Aligned_cols=99 Identities=9% Similarity=0.073 Sum_probs=59.1
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHhcCCc---chhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCC-CC-ChhhHHHHH
Q 007461 154 TCSRLVASCVRARKFKIANTLLQVFITDGEI---ALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGI-VL-DSGCYCQIM 228 (603)
Q Consensus 154 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~p-~~~~~~~ll 228 (603)
.|+.-+..+ +.|++..|...|..+.+..|. ...++-.|...+...|++++|..+|..+.+.-. .| -+..+--|.
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 466655544 345677777777777766553 345555666666666777777666666655321 11 123455555
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCC
Q 007461 229 EAYYKIGDSEKVAALFLECKSRKLD 253 (603)
Q Consensus 229 ~~~~~~g~~~~a~~~~~~~~~~~~~ 253 (603)
....+.|+.++|..+|+++.++.+.
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~YP~ 247 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRYPG 247 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHCCC
Confidence 6666666666666666666665543
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.89 E-value=5 Score=40.69 Aligned_cols=408 Identities=10% Similarity=-0.012 Sum_probs=228.0
Q ss_pred hhHHHHHHhcCCCChHHHHHHHHHHhhCCCCCCCHH-hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 007461 83 FDSFLHGMLKDPQTQELAYDYYNEAKKLPEFRPEKS-TLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVAS 161 (603)
Q Consensus 83 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 161 (603)
|..+|......... +.+...|+.+... .|-.. -|......=.+.|..+.+..+|++... +++-+...|...+..
T Consensus 48 wt~li~~~~~~~~~-~~~r~~y~~fL~k---yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y~~f 122 (577)
T KOG1258|consen 48 WTTLIQENDSIEDV-DALREVYDIFLSK---YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSYLAF 122 (577)
T ss_pred hHHHHhccCchhHH-HHHHHHHHHHHhh---CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHHHHH
Confidence 44445544333333 5577788877754 34443 577777777889999999999999875 456777788777765
Q ss_pred HH-ccCChHHHHHHHHHHHhcCC---cchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH---Hc
Q 007461 162 CV-RARKFKIANTLLQVFITDGE---IALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYY---KI 234 (603)
Q Consensus 162 ~~-~~~~~~~a~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~---~~ 234 (603)
+. ..|+.+..+..|+....... .....|...|..-...+++.....+++++++.-. .-++....-|. ..
T Consensus 123 ~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~----~~~~~~f~~f~~~l~~ 198 (577)
T KOG1258|consen 123 LKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPL----HQLNRHFDRFKQLLNQ 198 (577)
T ss_pred HhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhh----hHhHHHHHHHHHHHhc
Confidence 54 45888888889998877544 4677899999999999999999999999987421 12333222222 11
Q ss_pred ------CCHHHHHHHHHHHHhC-CCCCCCccHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 007461 235 ------GDSEKVAALFLECKSR-KLDSTPFSTHMYKILCDSLGK-SGRAFEALKFFRDMKEKGILEDPSIYASLICSFAS 306 (603)
Q Consensus 235 ------g~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 306 (603)
-..+++.++-.....+ ...........+..-+..-.. .+..+++.....+... .--..+-.
T Consensus 199 ~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~-----------~~~~~~~~ 267 (577)
T KOG1258|consen 199 NEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVS-----------IHEKVYQK 267 (577)
T ss_pred CChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHH-----------HHHHHHHh
Confidence 1233333332222211 000000001111111111111 1112222221111110 01111112
Q ss_pred cCCHHHHHHHHHHHHHcC---C----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCC
Q 007461 307 ITEVKLAEELFKEAEEKG---M----LRDPEVCLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRRG 379 (603)
Q Consensus 307 ~g~~~~a~~~~~~~~~~~---~----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 379 (603)
.......+..++...+.. + .++...|...++.-.+.|+.+.+.-+|+...---- .-...|-..+.-....|+
T Consensus 268 s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA-~Y~efWiky~~~m~~~~~ 346 (577)
T KOG1258|consen 268 SEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCA-LYDEFWIKYARWMESSGD 346 (577)
T ss_pred hHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHh-hhHHHHHHHHHHHHHcCc
Confidence 223333344444444331 1 22456788888888889999999888887753211 112235555555555688
Q ss_pred HHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcC-HhhHHHHHHHHHccCCHHHHH--
Q 007461 380 YWAAVKVYEQLISQGCIPGQ--VTYASIINAYCRIALYSKAEKVFIEMQQKGFDKC-VVAYSSMVAMYGKTGRIRDAM-- 454 (603)
Q Consensus 380 ~~~a~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~-- 454 (603)
.+-|-.++....+-.++-.+ ..+.+.+ +-..|+++.|..+++.+...- |+ +..-..-+....+.|..+.+.
T Consensus 347 ~~~~~~~~~~~~~i~~k~~~~i~L~~a~f--~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~ 422 (577)
T KOG1258|consen 347 VSLANNVLARACKIHVKKTPIIHLLEARF--EESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYK 422 (577)
T ss_pred hhHHHHHHHhhhhhcCCCCcHHHHHHHHH--HHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHH
Confidence 88888777766554433222 2222222 344678999999999887763 33 223333344455677777777
Q ss_pred -HHHHHHHHcCCCCCHhHHHHHHHHH-----HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 007461 455 -WLVAKMKAKGCEPNVWIYNSLMDMH-----GRAKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNRAR 518 (603)
Q Consensus 455 -~~~~~m~~~~~~p~~~~~~~li~~~-----~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 518 (603)
+++....+. .-+..+.+.+.--+ .-.++.+.|..++.++.+. ++++...|..++..+...+
T Consensus 423 ~~l~s~~~~~--~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 423 NELYSSIYEG--KENNGILEKLYVKFARLRYKIREDADLARIILLEANDI-LPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHHHHHhccc--ccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHhCC
Confidence 333333221 22333333333322 3367889999999999864 5666677888887776554
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=94.82 E-value=8 Score=42.68 Aligned_cols=23 Identities=17% Similarity=0.200 Sum_probs=11.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHH
Q 007461 509 TVISAYNRAREFDMCVKFYNEFR 531 (603)
Q Consensus 509 ~li~~~~~~g~~~~a~~~~~~~~ 531 (603)
.|+.-+...+++-+|-++..+..
T Consensus 1004 ~L~s~L~e~~kh~eAa~il~e~~ 1026 (1265)
T KOG1920|consen 1004 ELVSRLVEQRKHYEAAKILLEYL 1026 (1265)
T ss_pred HHHHHHHHcccchhHHHHHHHHh
Confidence 34444444555555555554444
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.77 E-value=1 Score=43.17 Aligned_cols=95 Identities=11% Similarity=0.045 Sum_probs=51.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 007461 471 IYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNRAREFDMCVKFYNEFRMNGGVIDRAIAGIMVGVFS 550 (603)
Q Consensus 471 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 550 (603)
.+..+..+|.+.+++..|++.-++.++.+ ++|...+-.=..+|...|+++.|+..|+++.+..+. |..+-+-++.+-.
T Consensus 259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~-Nka~~~el~~l~~ 336 (397)
T KOG0543|consen 259 CHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKLEPS-NKAARAELIKLKQ 336 (397)
T ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHH
Confidence 34555566666666666666666666443 234445555555666666666666666666664322 3334444444444
Q ss_pred ccCCHH-HHHHHHHHHHh
Q 007461 551 KLSQIE-ELVKLLQDMKS 567 (603)
Q Consensus 551 ~~g~~~-~A~~~~~~m~~ 567 (603)
+....+ ...++|..|..
T Consensus 337 k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 337 KIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 433333 23555666654
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=94.75 E-value=6.9 Score=41.65 Aligned_cols=196 Identities=13% Similarity=0.068 Sum_probs=98.8
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHH-hCCCCCC--HHHHHHHHHHHH-ccCChHHHHHHHHHHHhcCCc----c--
Q 007461 116 EKSTLKLLIRYLVQSKKWDSIVSLSEDFK-IYNVLPD--AHTCSRLVASCV-RARKFKIANTLLQVFITDGEI----A-- 185 (603)
Q Consensus 116 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~~~~~--~~~~~~ll~~~~-~~~~~~~a~~~~~~~~~~~~~----~-- 185 (603)
+...|..||. .|++.++-+. ...++|. ..++-.+...+. ...+++.|+..+++....... +
T Consensus 29 ~l~~Y~kLI~---------~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k 99 (608)
T PF10345_consen 29 QLKQYYKLIA---------TAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLK 99 (608)
T ss_pred hHHHHHHHHH---------HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHH
Confidence 3445555555 3344444444 3333332 234444555544 556777777777765433221 1
Q ss_pred hhhHHHHHhhhhhcCcHHHHHHHHHHHHhC----CCCCChhhHHHH-HHHHHHcCCHHHHHHHHHHHHhCCCCCCCccHH
Q 007461 186 LLAFNSAMGGYNKLHMYYSTILVYEKMKSA----GIVLDSGCYCQI-MEAYYKIGDSEKVAALFLECKSRKLDSTPFSTH 260 (603)
Q Consensus 186 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~p~~~~~~~l-l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 260 (603)
-.+-..++..+.+.+... |...+++.++. +..+-...+..+ +..+...+|...|.+.++.+.........+.+.
T Consensus 100 ~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~ 178 (608)
T PF10345_consen 100 FRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVF 178 (608)
T ss_pred HHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHH
Confidence 112234455555555544 77666665542 122222233333 222323368888888887776544322333334
Q ss_pred HHHHHHHHHh--ccCCHHHHHHHHHHHHHCCC---------CCCHHHHHHHHHHHH--ccCCHHHHHHHHHHHH
Q 007461 261 MYKILCDSLG--KSGRAFEALKFFRDMKEKGI---------LEDPSIYASLICSFA--SITEVKLAEELFKEAE 321 (603)
Q Consensus 261 ~~~~li~~~~--~~g~~~~A~~~~~~m~~~g~---------~p~~~~~~~ll~~~~--~~g~~~~a~~~~~~~~ 321 (603)
++-.++.+.. ..+..+++++.++.+..... .|-..+|..++..++ ..|+++.+...++++.
T Consensus 179 v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 179 VLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred HHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4444444433 34556677777766633211 234556666666554 5667666666665554
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=94.63 E-value=2.4 Score=35.77 Aligned_cols=101 Identities=10% Similarity=0.161 Sum_probs=43.5
Q ss_pred HHHHHHHHcCCCcCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 007461 420 KVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEMERRK 499 (603)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 499 (603)
++++.+.+.+++|+...|..+++.+.+.|++... ..+...++-+|.......+-.+.. ....+.++--+|..+
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L----~qllq~~Vi~DSk~lA~~LLs~~~--~~~~~~Ql~lDMLkR- 87 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQL----HQLLQYHVIPDSKPLACQLLSLGN--QYPPAYQLGLDMLKR- 87 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH----HHHHhhcccCCcHHHHHHHHHhHc--cChHHHHHHHHHHHH-
Confidence 3444444555555555666666666665554432 233333344444443333322221 122233333333221
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007461 500 VTPDKVSYTTVISAYNRAREFDMCVKFYNEF 530 (603)
Q Consensus 500 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 530 (603)
+ ...+..++..+...|++-+|+++.+..
T Consensus 88 L---~~~~~~iievLL~~g~vl~ALr~ar~~ 115 (167)
T PF07035_consen 88 L---GTAYEEIIEVLLSKGQVLEALRYARQY 115 (167)
T ss_pred h---hhhHHHHHHHHHhCCCHHHHHHHHHHc
Confidence 0 012334444555555555555555443
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.55 E-value=2.2 Score=37.93 Aligned_cols=85 Identities=11% Similarity=0.043 Sum_probs=38.9
Q ss_pred hHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHH
Q 007461 188 AFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCD 267 (603)
Q Consensus 188 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~ 267 (603)
.|.....+|.....+++|...+.+..+. ...|...|. ...-++.|.-+.+++....-. +..|+--..
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfh-------AAKayEqaamLake~~klsEv-----vdl~eKAs~ 99 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFH-------AAKAYEQAAMLAKELSKLSEV-----VDLYEKASE 99 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHH-------HHHHHHHHHHHHHHHHHhHHH-----HHHHHHHHH
Confidence 3444445555566666666655555431 111111111 112234444444444332211 124555556
Q ss_pred HHhccCCHHHHHHHHHHH
Q 007461 268 SLGKSGRAFEALKFFRDM 285 (603)
Q Consensus 268 ~~~~~g~~~~A~~~~~~m 285 (603)
.|..+|.++.|-..+++.
T Consensus 100 lY~E~GspdtAAmaleKA 117 (308)
T KOG1585|consen 100 LYVECGSPDTAAMALEKA 117 (308)
T ss_pred HHHHhCCcchHHHHHHHH
Confidence 666666666665555544
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=94.47 E-value=4.4 Score=38.21 Aligned_cols=133 Identities=14% Similarity=0.145 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHH--cC----CHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccCC-
Q 007461 202 YYSTILVYEKMKSAGIVLDSGCYCQIMEAYYK--IG----DSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGR- 274 (603)
Q Consensus 202 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~--~g----~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~- 274 (603)
+++.+.+++.|.+.|+.-+..+|.+..-.... .. ...+|..+|+.|++..+-.+..+-..+..|+.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 34556778888888888777666653333333 22 355788889999887665554444555555444 2222
Q ss_pred ---HHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHccCC--HHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 007461 275 ---AFEALKFFRDMKEKGILEDP--SIYASLICSFASITE--VKLAEELFKEAEEKGMLRDPEVCLKLV 336 (603)
Q Consensus 275 ---~~~A~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~g~--~~~a~~~~~~~~~~~~~~~~~~~~~l~ 336 (603)
.+++..+|+.+.+.|...+. .....++..+....+ +.++.++++.+.+.|+.+....|..+.
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lG 224 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLG 224 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHH
Confidence 35667777778777766532 233333333332222 346667777777777666555555443
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=94.33 E-value=2.8 Score=39.48 Aligned_cols=156 Identities=10% Similarity=0.063 Sum_probs=84.6
Q ss_pred HhcCCCChHHHHHHHHHHhhC-CCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCC---HHHHHHHHHHHH
Q 007461 90 MLKDPQTQELAYDYYNEAKKL-PEFRPEKSTLKLLIRYLVQSKKWDSIVSLSEDFKIY--NVLPD---AHTCSRLVASCV 163 (603)
Q Consensus 90 ~~~~~~~~~~a~~~~~~~~~~-~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~---~~~~~~ll~~~~ 163 (603)
+...++..+ |+..|.....+ ++..-.-.+|..+..+..+.|.+++++..--.-+.. ..... -.+|..+.+++-
T Consensus 16 Ly~s~~~~~-al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e 94 (518)
T KOG1941|consen 16 LYQSNQTEK-ALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNE 94 (518)
T ss_pred HhcCchHHH-HHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555554 77777665542 111222346777888888888887766543222111 11111 123444444454
Q ss_pred ccCChHHHHHHHHHHHhcCCcc-----hhhHHHHHhhhhhcCcHHHHHHHHHHHHhCC-----CCCChhhHHHHHHHHHH
Q 007461 164 RARKFKIANTLLQVFITDGEIA-----LLAFNSAMGGYNKLHMYYSTILVYEKMKSAG-----IVLDSGCYCQIMEAYYK 233 (603)
Q Consensus 164 ~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-----~~p~~~~~~~ll~~~~~ 233 (603)
+.-++.+++.+-..-...+..+ -....++..+....+.++++++.|+...+.- ......++..|-+.|.+
T Consensus 95 ~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~ 174 (518)
T KOG1941|consen 95 KLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQ 174 (518)
T ss_pred HHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHH
Confidence 4455555555555444433211 1334456666777777888888887765421 11123466777777888
Q ss_pred cCCHHHHHHHHHH
Q 007461 234 IGDSEKVAALFLE 246 (603)
Q Consensus 234 ~g~~~~a~~~~~~ 246 (603)
..|.++|.-+..+
T Consensus 175 l~D~~Kal~f~~k 187 (518)
T KOG1941|consen 175 LKDYEKALFFPCK 187 (518)
T ss_pred HHhhhHHhhhhHh
Confidence 8887777655443
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.31 E-value=4.6 Score=37.73 Aligned_cols=113 Identities=7% Similarity=-0.067 Sum_probs=45.8
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhH----HHHHhhhhhcCcHHHH
Q 007461 130 SKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAF----NSAMGGYNKLHMYYST 205 (603)
Q Consensus 130 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~l~~~~~~~~~~~~a 205 (603)
+|++.+|-..++++.+. .|.|..++...=++|.-.|+...-...++++...-.++...| ....-++...|-+++|
T Consensus 116 ~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dA 194 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDA 194 (491)
T ss_pred cccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhH
Confidence 34444444444444332 234444444444444444444444444444443322222111 1122223344444444
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHHcCCHHHHHHHH
Q 007461 206 ILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALF 244 (603)
Q Consensus 206 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 244 (603)
.+.-++..+.+. .|......+...+-..|+..++.++.
T Consensus 195 Ek~A~ralqiN~-~D~Wa~Ha~aHVlem~~r~Keg~eFM 232 (491)
T KOG2610|consen 195 EKQADRALQINR-FDCWASHAKAHVLEMNGRHKEGKEFM 232 (491)
T ss_pred HHHHHhhccCCC-cchHHHHHHHHHHHhcchhhhHHHHH
Confidence 444444443321 13333344444444444444444443
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=94.28 E-value=4.8 Score=37.83 Aligned_cols=122 Identities=14% Similarity=0.055 Sum_probs=56.6
Q ss_pred HhcCCHHHHHHHHHHHHhCC--CCCCH------HHHHHHHHHHHccCChHHHHHHHHHHHhc----CC-----c-----c
Q 007461 128 VQSKKWDSIVSLSEDFKIYN--VLPDA------HTCSRLVASCVRARKFKIANTLLQVFITD----GE-----I-----A 185 (603)
Q Consensus 128 ~~~~~~~~a~~~~~~~~~~~--~~~~~------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~-----~-----~ 185 (603)
.+.|+.+.|..++.+..... ..|+. ..|+.-...+.+..+++.|..++++..+. +. + .
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 35667777777777665432 12221 12333333332222666666665554332 11 1 1
Q ss_pred hhhHHHHHhhhhhcCcHH---HHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 007461 186 LLAFNSAMGGYNKLHMYY---STILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSR 250 (603)
Q Consensus 186 ~~~~~~l~~~~~~~~~~~---~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 250 (603)
..+...++.+|...+..+ +|..+++.+...... .+.++..-++.+.+.++.+++.+++.+|...
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESEYGN-KPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 234445555555554433 344444444332211 2334444455555566666666666666544
|
It is also involved in sporulation []. |
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.07 E-value=0.92 Score=35.79 Aligned_cols=90 Identities=12% Similarity=-0.030 Sum_probs=55.0
Q ss_pred HHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCCh---hhHHHHHHHHHHcCCHH
Q 007461 162 CVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDS---GCYCQIMEAYYKIGDSE 238 (603)
Q Consensus 162 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~---~~~~~ll~~~~~~g~~~ 238 (603)
++..|+++.|++.|.+....-|....+||.-..++.-.|+.++|++-+++.++..-.... ..|..-...|...|+.+
T Consensus 53 laE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~dd 132 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGNDD 132 (175)
T ss_pred HHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCchH
Confidence 455667777777777766666666777777777777777777777766666653211111 12233334455667777
Q ss_pred HHHHHHHHHHhCC
Q 007461 239 KVAALFLECKSRK 251 (603)
Q Consensus 239 ~a~~~~~~~~~~~ 251 (603)
.|+.=|+...+.|
T Consensus 133 ~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 133 AARADFEAAAQLG 145 (175)
T ss_pred HHHHhHHHHHHhC
Confidence 7777776665544
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.99 E-value=0.71 Score=41.81 Aligned_cols=95 Identities=11% Similarity=-0.017 Sum_probs=77.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHccCChHHHHHHHHHHHhcCC---cchhhHHHH
Q 007461 119 TLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPD---AHTCSRLVASCVRARKFKIANTLLQVFITDGE---IALLAFNSA 192 (603)
Q Consensus 119 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~l 192 (603)
.|+.-+. +.+.|++..|...|...++.. +.+ ..++=.|..++...|++++|..+|..+.+..| .-+.++-.|
T Consensus 144 ~Y~~A~~-~~ksgdy~~A~~~F~~fi~~Y-P~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 144 LYNAALD-LYKSGDYAEAEQAFQAFIKKY-PNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred HHHHHHH-HHHcCCHHHHHHHHHHHHHcC-CCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 4766555 557788999999999998874 222 33455688899999999999999999988766 356888899
Q ss_pred HhhhhhcCcHHHHHHHHHHHHhC
Q 007461 193 MGGYNKLHMYYSTILVYEKMKSA 215 (603)
Q Consensus 193 ~~~~~~~~~~~~a~~~~~~m~~~ 215 (603)
.....+.|+.++|...|+++.+.
T Consensus 222 g~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHH
Confidence 99999999999999999999886
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=93.96 E-value=2.6 Score=41.58 Aligned_cols=148 Identities=10% Similarity=0.025 Sum_probs=95.8
Q ss_pred ChHHHHHHHHHHHHc-CCCcC-HhhHHHHHHHHHc---------cCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhc
Q 007461 414 LYSKAEKVFIEMQQK-GFDKC-VVAYSSMVAMYGK---------TGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRA 482 (603)
Q Consensus 414 ~~~~a~~~~~~~~~~-~~~~~-~~~~~~li~~~~~---------~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 482 (603)
..+.|..+|.+.... ...|+ ...|..+..++.. .....+|.+.-++..+.+ .-|......+..+..-.
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhh
Confidence 356788888888722 23443 4444444433332 233456777777777763 44777777777777778
Q ss_pred CCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHccCCHHHHHH
Q 007461 483 KNLRQVEKLWKEMERRKVTPDK-VSYTTVISAYNRAREFDMCVKFYNEFRMNGGV-IDRAIAGIMVGVFSKLSQIEELVK 560 (603)
Q Consensus 483 g~~~~a~~~~~~m~~~~~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~ 560 (603)
++++.|..+|++... +.||. .+|......+..+|+.++|.+.+++..+..+. .-..+....++.|+..+ .++|++
T Consensus 352 ~~~~~a~~~f~rA~~--L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~-~~~~~~ 428 (458)
T PRK11906 352 GQAKVSHILFEQAKI--HSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNP-LKNNIK 428 (458)
T ss_pred cchhhHHHHHHHHhh--cCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCc-hhhhHH
Confidence 889999999999884 45665 35666666677789999999999987765322 12234445555666655 677888
Q ss_pred HHHHH
Q 007461 561 LLQDM 565 (603)
Q Consensus 561 ~~~~m 565 (603)
++-+-
T Consensus 429 ~~~~~ 433 (458)
T PRK11906 429 LYYKE 433 (458)
T ss_pred HHhhc
Confidence 77543
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=93.90 E-value=7.5 Score=38.67 Aligned_cols=63 Identities=17% Similarity=0.189 Sum_probs=38.6
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHcC-CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 007461 435 VAYSSMVAMYGKTGRIRDAMWLVAKMKAKG-CEPNVWIYNSLMDMHGRAKNLRQVEKLWKEMER 497 (603)
Q Consensus 435 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 497 (603)
.+-..+..++-+.|+.++|.+.+.+|.+.. ..-+..+...|+.++...+.+.++..++.+..+
T Consensus 260 y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 260 YAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred hhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 333445555566777777777777776531 111334556677777777777777777777643
|
The molecular function of this protein is uncertain. |
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.88 E-value=3.4 Score=34.63 Aligned_cols=124 Identities=13% Similarity=0.066 Sum_probs=58.8
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHH--HHHccCC
Q 007461 233 KIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEKGILEDPS-IYASLIC--SFASITE 309 (603)
Q Consensus 233 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~--~~~~~g~ 309 (603)
+.+..++|..-|..+...+...-| +...--+.....+.|+..+|+..|++.-.....|-.. -...|=. .+...|.
T Consensus 70 ~~~k~d~Alaaf~~lektg~g~Yp--vLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gs 147 (221)
T COG4649 70 QENKTDDALAAFTDLEKTGYGSYP--VLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGS 147 (221)
T ss_pred HcCCchHHHHHHHHHHhcCCCcch--HHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhcccc
Confidence 445555555555555555443322 1111222233445556666666666554432223221 1111111 2235566
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 007461 310 VKLAEELFKEAEEKGMLRDPEVCLKLVLMYIEEGLVEKTLDVVESMKNA 358 (603)
Q Consensus 310 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 358 (603)
++......+.+...+.+.-...-.+|.-+-.+.|++.+|...|..+.+.
T Consensus 148 y~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 148 YDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred HHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 6665555555444333333334445555666667777777777666553
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=93.62 E-value=8 Score=38.49 Aligned_cols=60 Identities=7% Similarity=0.113 Sum_probs=37.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007461 333 LKLVLMYIEEGLVEKTLDVVESMKNAKLKI-SDCISCAIVNGFSKRRGYWAAVKVYEQLIS 392 (603)
Q Consensus 333 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 392 (603)
..+..+.-+.|+.++|.+.+.+|.+..+.. ...+...|+.++...+.+.++..++.+-.+
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 345555666677777777777766543322 233556677777777777777777776543
|
The molecular function of this protein is uncertain. |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.56 E-value=6 Score=36.47 Aligned_cols=143 Identities=8% Similarity=0.097 Sum_probs=85.9
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHH
Q 007461 408 AYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQ 487 (603)
Q Consensus 408 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 487 (603)
.....|+..+|..+|+...... +-+...--.++.+|...|+.+.|..++..+...--.........-|..+.+.....+
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence 4566788888888888877764 334566677888888888888888888887643111111111222344444444444
Q ss_pred HHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHccCC
Q 007461 488 VEKLWKEMERRKVTP-DKVSYTTVISAYNRAREFDMCVKFYNEFRMNGGV-IDRAIAGIMVGVFSKLSQ 554 (603)
Q Consensus 488 a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~ 554 (603)
...+-.+.-. .| |...-..+...+...|+.++|.+.+=.+.+++.. -|...-..+++.+.-.|.
T Consensus 222 ~~~l~~~~aa---dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~ 287 (304)
T COG3118 222 IQDLQRRLAA---DPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGP 287 (304)
T ss_pred HHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCC
Confidence 4444444432 24 4555566667777788888888877666554322 244444556665555553
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=93.52 E-value=0.3 Score=30.61 Aligned_cols=41 Identities=15% Similarity=0.023 Sum_probs=33.1
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 007461 118 STLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLV 159 (603)
Q Consensus 118 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 159 (603)
.++..+...+.+.|++++|+++|+++.+.. +-|...+..+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~-P~~~~a~~~La 42 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALD-PDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCCHHHHHHhh
Confidence 467788999999999999999999999886 55666665543
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.47 E-value=0.75 Score=42.36 Aligned_cols=77 Identities=16% Similarity=0.100 Sum_probs=49.2
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHh-----CCCCCChhhHHHHH
Q 007461 154 TCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKS-----AGIVLDSGCYCQIM 228 (603)
Q Consensus 154 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~-----~~~~p~~~~~~~ll 228 (603)
++..++..+...|+++.+...++++....|-+...|..++.+|.+.|+...|+..|+.+.+ .|+.|...+.....
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y~ 234 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALYE 234 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHHH
Confidence 3444555566666677777777777776666777777777777777777777776666554 45666555544444
Q ss_pred HH
Q 007461 229 EA 230 (603)
Q Consensus 229 ~~ 230 (603)
..
T Consensus 235 ~~ 236 (280)
T COG3629 235 EI 236 (280)
T ss_pred HH
Confidence 33
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=93.43 E-value=2 Score=34.99 Aligned_cols=58 Identities=10% Similarity=0.042 Sum_probs=25.7
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCC
Q 007461 126 YLVQSKKWDSIVSLSEDFKIYNV--LPDAHTCSRLVASCVRARKFKIANTLLQVFITDGE 183 (603)
Q Consensus 126 ~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 183 (603)
...+.|++++|.+.|+.+...-. +-...+...++.+|.+.++++.|...++++++..|
T Consensus 19 ~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP 78 (142)
T PF13512_consen 19 EALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHP 78 (142)
T ss_pred HHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence 33444555555555555544320 11223333444444444555555555444444444
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=93.35 E-value=7.1 Score=36.67 Aligned_cols=101 Identities=10% Similarity=0.053 Sum_probs=56.0
Q ss_pred HHHHHHHHHHhcCChH---HHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhHHHHHHH
Q 007461 401 TYASIINAYCRIALYS---KAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMD 477 (603)
Q Consensus 401 ~~~~ll~~~~~~g~~~---~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 477 (603)
++..++.+|...+..+ +|..+++.+.... +..+.++..-++.+.+.++.+++.+++.+|... +.-....+..++.
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~-~~~~e~~~~~~l~ 163 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS-VDHSESNFDSILH 163 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh-cccccchHHHHHH
Confidence 4555666666665543 4555555554432 223555656666777778888888888888765 2212333444444
Q ss_pred HH---HhcCCHHHHHHHHHHHHhCCCCCCH
Q 007461 478 MH---GRAKNLRQVEKLWKEMERRKVTPDK 504 (603)
Q Consensus 478 ~~---~~~g~~~~a~~~~~~m~~~~~~p~~ 504 (603)
.+ .. .....+...+..++...+.|..
T Consensus 164 ~i~~l~~-~~~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 164 HIKQLAE-KSPELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred HHHHHHh-hCcHHHHHHHHHHHHHHhCCCh
Confidence 43 33 2335566666665544444444
|
It is also involved in sporulation []. |
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.34 E-value=5.8 Score=35.59 Aligned_cols=96 Identities=17% Similarity=0.154 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 007461 329 PEVCLKLVLMYIEEGLVEKTLDVVESMKNA-KLKISDCISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIIN 407 (603)
Q Consensus 329 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 407 (603)
..........+...+.+..+...+...... ........+......+...+++..+...+.........+. ........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 137 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD-LAEALLAL 137 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc-hHHHHHHH
Confidence 344445555555555555555555554431 1112223344444444444555555555555544322221 11111111
Q ss_pred -HHHhcCChHHHHHHHHHH
Q 007461 408 -AYCRIALYSKAEKVFIEM 425 (603)
Q Consensus 408 -~~~~~g~~~~a~~~~~~~ 425 (603)
.+...|+++.+...+...
T Consensus 138 ~~~~~~~~~~~a~~~~~~~ 156 (291)
T COG0457 138 GALYELGDYEEALELYEKA 156 (291)
T ss_pred HHHHHcCCHHHHHHHHHHH
Confidence 344455555555555554
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.28 E-value=1 Score=41.43 Aligned_cols=75 Identities=11% Similarity=0.098 Sum_probs=41.2
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHHHHH
Q 007461 470 WIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNRAREFDMCVKFYNEFRM-----NGGVIDRAIAGI 544 (603)
Q Consensus 470 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~~~~~ 544 (603)
.++..++..+...|+.+.+...++++.... +-|...|..++.+|.+.|+...|+..|+.+.+ .|+.|...+...
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 344555555666666666666666665442 22455566666666666666666666665543 244444444443
Q ss_pred H
Q 007461 545 M 545 (603)
Q Consensus 545 l 545 (603)
+
T Consensus 233 y 233 (280)
T COG3629 233 Y 233 (280)
T ss_pred H
Confidence 3
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=92.81 E-value=5.2 Score=33.60 Aligned_cols=126 Identities=10% Similarity=-0.021 Sum_probs=60.9
Q ss_pred hcCcHHHHHHHHHHHHhCCCCCChh-hHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccCCHH
Q 007461 198 KLHMYYSTILVYEKMKSAGIVLDSG-CYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAF 276 (603)
Q Consensus 198 ~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 276 (603)
+.+..++|+.-|..+.+.|...-+. ............|+...|...|+++-.....|...--..----.-.+..+|.++
T Consensus 70 ~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~ 149 (221)
T COG4649 70 QENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYD 149 (221)
T ss_pred HcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHH
Confidence 3444555555555555544331111 111222334455666666666666655444432210000111112345566666
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 007461 277 EALKFFRDMKEKGILEDPSIYASLICSFASITEVKLAEELFKEAEEK 323 (603)
Q Consensus 277 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 323 (603)
+...-++-+-..+-......-..|.-+-.+.|++..|..+|..+...
T Consensus 150 dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 150 DVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred HHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 66666655544433333334445555555677777777777776654
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=92.53 E-value=9.8 Score=36.11 Aligned_cols=56 Identities=16% Similarity=0.042 Sum_probs=25.0
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHCCC-----CCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 007461 265 LCDSLGKSGRAFEALKFFRDMKEKGI-----LEDPSIYASLICSFASITEVKLAEELFKEA 320 (603)
Q Consensus 265 li~~~~~~g~~~~A~~~~~~m~~~g~-----~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 320 (603)
+..++...+.++++++.|+...+-.. ......+..+-..+.+..|.+++.-+..++
T Consensus 128 ~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA 188 (518)
T KOG1941|consen 128 MGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKA 188 (518)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhH
Confidence 44444444455555555554432110 011234445555555555555554444443
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.51 E-value=7.9 Score=34.99 Aligned_cols=70 Identities=13% Similarity=0.144 Sum_probs=34.3
Q ss_pred ccCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHH
Q 007461 306 SITEVKLAEELFKEAEEKGM--LRDPEVCLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFS 375 (603)
Q Consensus 306 ~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 375 (603)
+.|++++|...|+.+..... +-...+.-.++.++.+.+++++|+..+++.....+.-...-|-..|.+++
T Consensus 46 ~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs 117 (254)
T COG4105 46 QKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLS 117 (254)
T ss_pred hcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHH
Confidence 45555555555555554321 11233444455555666666666666665554443333333444444444
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=92.49 E-value=9.7 Score=35.97 Aligned_cols=49 Identities=22% Similarity=0.399 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc--cC----CHHHHHHHHHHHHHc
Q 007461 275 AFEALKFFRDMKEKGILEDPSIYASLICSFAS--IT----EVKLAEELFKEAEEK 323 (603)
Q Consensus 275 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~--~g----~~~~a~~~~~~~~~~ 323 (603)
+++.+++++.|.+.|.+-+..+|.+..-.... .. ....+..+++.|.+.
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~ 132 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKK 132 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHh
Confidence 34455677777777777666666543332222 11 234455555555554
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=92.36 E-value=4.9 Score=32.75 Aligned_cols=51 Identities=20% Similarity=0.116 Sum_probs=24.2
Q ss_pred cCChHHHHHHHHHHHhcCCc---chhhHHHHHhhhhhcCcHHHHHHHHHHHHhC
Q 007461 165 ARKFKIANTLLQVFITDGEI---ALLAFNSAMGGYNKLHMYYSTILVYEKMKSA 215 (603)
Q Consensus 165 ~~~~~~a~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 215 (603)
.|++++|.+.|+.+...-|. ...+-..++.+|.+.+++++|+..+++.++.
T Consensus 23 ~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirL 76 (142)
T PF13512_consen 23 KGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL 76 (142)
T ss_pred hCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 34555555555555444331 2334444444555555555555555554443
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=92.13 E-value=6.6 Score=33.19 Aligned_cols=98 Identities=13% Similarity=0.232 Sum_probs=43.4
Q ss_pred HHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCc
Q 007461 353 ESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQKGFDK 432 (603)
Q Consensus 353 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 432 (603)
..+.+.++.|+...+..++..+.+.|++.. +.++...++-+|.......+-.+. +....+.++=-+|.+.=
T Consensus 18 rSl~~~~i~~~~~L~~lli~lLi~~~~~~~----L~qllq~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkRL--- 88 (167)
T PF07035_consen 18 RSLNQHNIPVQHELYELLIDLLIRNGQFSQ----LHQLLQYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKRL--- 88 (167)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHhhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHHh---
Confidence 334444555555555555555555555332 333334444455444443332222 12222333333333220
Q ss_pred CHhhHHHHHHHHHccCCHHHHHHHHHHH
Q 007461 433 CVVAYSSMVAMYGKTGRIRDAMWLVAKM 460 (603)
Q Consensus 433 ~~~~~~~li~~~~~~g~~~~A~~~~~~m 460 (603)
...+..+++.+...|++-+|.++.+..
T Consensus 89 -~~~~~~iievLL~~g~vl~ALr~ar~~ 115 (167)
T PF07035_consen 89 -GTAYEEIIEVLLSKGQVLEALRYARQY 115 (167)
T ss_pred -hhhHHHHHHHHHhCCCHHHHHHHHHHc
Confidence 013444555555566666666665554
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.08 E-value=8.5 Score=34.42 Aligned_cols=222 Identities=11% Similarity=0.035 Sum_probs=153.1
Q ss_pred cCCHHHHHHHHHHHHhCCCC-CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCChHHHH
Q 007461 342 EGLVEKTLDVVESMKNAKLK-ISDCISCAIVNGFSKRRGYWAAVKVYEQLISQ-GCIPGQVTYASIINAYCRIALYSKAE 419 (603)
Q Consensus 342 ~g~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~p~~~~~~~ll~~~~~~g~~~~a~ 419 (603)
.+....+...+......... .....+......+...+....+...+...... ........+......+...+....+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 34455555555555544432 12456777788888899999999888887652 22345566667777777888889999
Q ss_pred HHHHHHHHcCCCcCHhhHHHHHH-HHHccCCHHHHHHHHHHHHHcCCCC----CHhHHHHHHHHHHhcCCHHHHHHHHHH
Q 007461 420 KVFIEMQQKGFDKCVVAYSSMVA-MYGKTGRIRDAMWLVAKMKAKGCEP----NVWIYNSLMDMHGRAKNLRQVEKLWKE 494 (603)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~li~-~~~~~g~~~~A~~~~~~m~~~~~~p----~~~~~~~li~~~~~~g~~~~a~~~~~~ 494 (603)
..+.........+ ......... .+...|+++.|...+++.... .| ....+......+...++.+.+...+.+
T Consensus 116 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 192 (291)
T COG0457 116 ELLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALEL--DPELNELAEALLALGALLEALGRYEEALELLEK 192 (291)
T ss_pred HHHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCccchHHHHHHhhhHHHHhcCHHHHHHHHHH
Confidence 9999888754333 222333333 688899999999999998652 33 333444444456778899999999999
Q ss_pred HHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 007461 495 MERRKVTP-DKVSYTTVISAYNRAREFDMCVKFYNEFRMNGGVIDRAIAGIMVGVFSKLSQIEELVKLLQDMKSE 568 (603)
Q Consensus 495 m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 568 (603)
..... .. ....+..+...+...++++.+...+......... ....+..+...+...|..+++...+++....
T Consensus 193 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 193 ALKLN-PDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD-NAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred HHhhC-cccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc-cHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 88642 22 3567888888888889999999999988875332 2344444555555777899999888888765
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.83 E-value=9.1 Score=34.21 Aligned_cols=85 Identities=13% Similarity=0.085 Sum_probs=40.0
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 007461 261 MYKILCDSLGKSGRAFEALKFFRDMKEKGILEDPSIYASLICSFASITEVKLAEELFKEAEEKGMLRDPEVCLKLVLMYI 340 (603)
Q Consensus 261 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 340 (603)
.|.--..+|....+++.|...+.+..+- .+-+. .+-.- ....+.|.-+.+++.+.. --...++.-..+|.
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~~-yEnnr-slfhA------AKayEqaamLake~~kls--Evvdl~eKAs~lY~ 102 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNR-SLFHA------AKAYEQAAMLAKELSKLS--EVVDLYEKASELYV 102 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcc-cHHHH------HHHHHHHHHHHHHHHHhH--HHHHHHHHHHHHHH
Confidence 3444555666666777776666555421 11111 11111 122344444444444321 11234455556677
Q ss_pred HcCCHHHHHHHHHHH
Q 007461 341 EEGLVEKTLDVVESM 355 (603)
Q Consensus 341 ~~g~~~~a~~~~~~~ 355 (603)
.+|..+.|-..+++.
T Consensus 103 E~GspdtAAmaleKA 117 (308)
T KOG1585|consen 103 ECGSPDTAAMALEKA 117 (308)
T ss_pred HhCCcchHHHHHHHH
Confidence 777766665555544
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=91.68 E-value=2.6 Score=36.33 Aligned_cols=94 Identities=12% Similarity=0.028 Sum_probs=54.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-------H
Q 007461 471 IYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDKV--SYTTVISAYNRAREFDMCVKFYNEFRMNGGVIDRA-------I 541 (603)
Q Consensus 471 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~--~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-------~ 541 (603)
.+..+...|.+.|+.+.|.+.|.++.+....|... .+-.+|+.....+++..+.....++...--..+.. .
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 45566666777777777777777776654444432 35666666667777777777766654432111111 1
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHH
Q 007461 542 AGIMVGVFSKLSQIEELVKLLQDMK 566 (603)
Q Consensus 542 ~~~l~~~~~~~g~~~~A~~~~~~m~ 566 (603)
|..+ .+...|++.+|.+.|-...
T Consensus 118 ~~gL--~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 118 YEGL--ANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHH--HHHHhchHHHHHHHHHccC
Confidence 2222 2234678888888776554
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=91.64 E-value=0.17 Score=29.61 Aligned_cols=30 Identities=20% Similarity=0.052 Sum_probs=15.2
Q ss_pred HHHhcCCcchhhHHHHHhhhhhcCcHHHHH
Q 007461 177 VFITDGEIALLAFNSAMGGYNKLHMYYSTI 206 (603)
Q Consensus 177 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 206 (603)
+.++..|.+..+|+.+...|...|++++|+
T Consensus 4 kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 4 KAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 334444455555555555555555555543
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=91.63 E-value=21 Score=37.96 Aligned_cols=88 Identities=10% Similarity=0.095 Sum_probs=32.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCcCHhhHHHHHHHHHc--
Q 007461 370 IVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQKG-FDKCVVAYSSMVAMYGK-- 446 (603)
Q Consensus 370 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~-- 446 (603)
....+.-.|+++.|++++-. ..+...+.+.+...+..|.-.+-.+... ..+.... -.|...-+..||..|++
T Consensus 264 Yf~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F 338 (613)
T PF04097_consen 264 YFQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSF 338 (613)
T ss_dssp HHHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTT
T ss_pred HHHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHH
Confidence 34455566777777776665 1122334444444443332221111111 2222110 01111445666666664
Q ss_pred -cCCHHHHHHHHHHHHH
Q 007461 447 -TGRIRDAMWLVAKMKA 462 (603)
Q Consensus 447 -~g~~~~A~~~~~~m~~ 462 (603)
..++.+|.+.+--+..
T Consensus 339 ~~td~~~Al~Y~~li~~ 355 (613)
T PF04097_consen 339 EITDPREALQYLYLICL 355 (613)
T ss_dssp TTT-HHHHHHHHHGGGG
T ss_pred hccCHHHHHHHHHHHHH
Confidence 3456666666655543
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.27 E-value=6.2 Score=31.34 Aligned_cols=51 Identities=10% Similarity=0.045 Sum_probs=23.3
Q ss_pred hhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007461 197 NKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECK 248 (603)
Q Consensus 197 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 248 (603)
...|+.+.|++.|.+.+..- +.....||.-..++.-.|+.++|.+=+++..
T Consensus 54 aE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~Al 104 (175)
T KOG4555|consen 54 AEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKAL 104 (175)
T ss_pred HhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHH
Confidence 34445555555554444331 1133445554555544555555544444443
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=90.82 E-value=5.2 Score=34.45 Aligned_cols=63 Identities=13% Similarity=0.003 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH--hhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007461 330 EVCLKLVLMYIEEGLVEKTLDVVESMKNAKLKISD--CISCAIVNGFSKRRGYWAAVKVYEQLIS 392 (603)
Q Consensus 330 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~li~~~~~~~~~~~a~~~~~~m~~ 392 (603)
..+..+...|++.|+.+.|.+.|.++.+....+.. ..+-.+|......+++..+...+.+...
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34556777788888888888888877776544332 2245556666666777766666655543
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=90.44 E-value=0.63 Score=27.54 Aligned_cols=25 Identities=4% Similarity=0.150 Sum_probs=17.3
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHH
Q 007461 542 AGIMVGVFSKLSQIEELVKLLQDMK 566 (603)
Q Consensus 542 ~~~l~~~~~~~g~~~~A~~~~~~m~ 566 (603)
|..|...|.+.|++++|++++++..
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5667777777777777777777744
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=90.27 E-value=2 Score=31.96 Aligned_cols=43 Identities=16% Similarity=0.350 Sum_probs=21.1
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHH
Q 007461 137 VSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFI 179 (603)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 179 (603)
.+-++.+...++.|++....+.+++|.+-+++..|.++|+.+.
T Consensus 27 rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 27 RRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3334444444445555555555555555555555555555444
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=90.22 E-value=0.63 Score=27.56 Aligned_cols=25 Identities=12% Similarity=0.203 Sum_probs=15.9
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHH
Q 007461 262 YKILCDSLGKSGRAFEALKFFRDMK 286 (603)
Q Consensus 262 ~~~li~~~~~~g~~~~A~~~~~~m~ 286 (603)
|+.|...|.+.|++++|+++|++.+
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5666666777777777777766643
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=90.17 E-value=2 Score=32.23 Aligned_cols=59 Identities=12% Similarity=0.211 Sum_probs=31.0
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHH
Q 007461 135 SIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAM 193 (603)
Q Consensus 135 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 193 (603)
+..+-++.+...++.|++....+.+++|.+-+++..|.++|+.+...-......|..++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~l 86 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYIL 86 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHHH
Confidence 44444555555566666666666666666666666666666666554333333444444
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=89.71 E-value=30 Score=36.60 Aligned_cols=155 Identities=12% Similarity=0.159 Sum_probs=72.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcC
Q 007461 124 IRYLVQSKKWDSIVSLSEDFKIYNVLP---DAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLH 200 (603)
Q Consensus 124 ~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 200 (603)
++-+.+.+.+++|+...+... |..| -.......|..+...|++++|-...-.|... +...|..-+..+...+
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~--~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn---~~~eWe~~V~~f~e~~ 437 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASI--GNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN---NAAEWELWVFKFAELD 437 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhcc--CCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc---hHHHHHHHHHHhcccc
Confidence 344555666667766665433 2233 2344555666666667777666665555432 3333443333333333
Q ss_pred cHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhC-------------CCCCCCccHHHHHHHHH
Q 007461 201 MYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSR-------------KLDSTPFSTHMYKILCD 267 (603)
Q Consensus 201 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-------------~~~~~~~~~~~~~~li~ 267 (603)
+... ++.-++......+...|..++..+.. .+...-.++..+.... .......+...-..|+.
T Consensus 438 ~l~~---Ia~~lPt~~~rL~p~vYemvLve~L~-~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~Se~~~L~e~La~ 513 (846)
T KOG2066|consen 438 QLTD---IAPYLPTGPPRLKPLVYEMVLVEFLA-SDVKGFLELIKEWPGHLYSVLTIISATEPQIKQNSESTALLEVLAH 513 (846)
T ss_pred ccch---hhccCCCCCcccCchHHHHHHHHHHH-HHHHHHHHHHHhCChhhhhhhHHHhhcchHHHhhccchhHHHHHHH
Confidence 3222 11122222222344456655555554 2222222222111100 00000001123445777
Q ss_pred HHhccCCHHHHHHHHHHHHH
Q 007461 268 SLGKSGRAFEALKFFRDMKE 287 (603)
Q Consensus 268 ~~~~~g~~~~A~~~~~~m~~ 287 (603)
.|...+++..|++++-.+++
T Consensus 514 LYl~d~~Y~~Al~~ylklk~ 533 (846)
T KOG2066|consen 514 LYLYDNKYEKALPIYLKLQD 533 (846)
T ss_pred HHHHccChHHHHHHHHhccC
Confidence 88888888888888766653
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=89.37 E-value=33 Score=36.54 Aligned_cols=42 Identities=14% Similarity=0.183 Sum_probs=19.8
Q ss_pred HHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhh
Q 007461 157 RLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNK 198 (603)
Q Consensus 157 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 198 (603)
.+|=.|.++|++++|.++.......-......+-..+..|..
T Consensus 116 a~Iyy~LR~G~~~~A~~~~~~~~~~~~~~~~~f~~~l~~~~~ 157 (613)
T PF04097_consen 116 ALIYYCLRCGDYDEALEVANENRNQFQKIERSFPTYLKAYAS 157 (613)
T ss_dssp HHHHHHHTTT-HHHHHHHHHHTGGGS-TTTTHHHHHHHHCTT
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhhhcchhHHHHHHHHHHHh
Confidence 344445566666666665543333333334445555555544
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.12 E-value=15 Score=32.27 Aligned_cols=173 Identities=10% Similarity=0.036 Sum_probs=86.6
Q ss_pred HHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC
Q 007461 174 LLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLD 253 (603)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 253 (603)
=|.+.....|.-+.+||.+.--+...|+++.|.+.|+...+.+..-+-...|.-|. +.-.|++.-|.+-|...-+.++.
T Consensus 87 DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~-~YY~gR~~LAq~d~~~fYQ~D~~ 165 (297)
T COG4785 87 DFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIA-LYYGGRYKLAQDDLLAFYQDDPN 165 (297)
T ss_pred hhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcccee-eeecCchHhhHHHHHHHHhcCCC
Confidence 34444455566677788888888888888888888888777644322222222222 22457777777666555544432
Q ss_pred CCCccHHHHHHHHHHHh-ccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HccCCHHHHHHHHHHHHHcCCC-----
Q 007461 254 STPFSTHMYKILCDSLG-KSGRAFEALKFFRDMKEKGILEDPSIYASLICSF-ASITEVKLAEELFKEAEEKGML----- 326 (603)
Q Consensus 254 ~~~~~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~-~~~g~~~~a~~~~~~~~~~~~~----- 326 (603)
. | |.+|=-.+. ..-++.+|..-+.+--+ ..|..-|...|-.+ ...=..+. +++.+....-.
T Consensus 166 D-P-----fR~LWLYl~E~k~dP~~A~tnL~qR~~---~~d~e~WG~~iV~~yLgkiS~e~---l~~~~~a~a~~n~~~A 233 (297)
T COG4785 166 D-P-----FRSLWLYLNEQKLDPKQAKTNLKQRAE---KSDKEQWGWNIVEFYLGKISEET---LMERLKADATDNTSLA 233 (297)
T ss_pred C-h-----HHHHHHHHHHhhCCHHHHHHHHHHHHH---hccHhhhhHHHHHHHHhhccHHH---HHHHHHhhccchHHHH
Confidence 1 1 333322221 22345555543322211 22444444333322 21111111 22222211100
Q ss_pred -CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 007461 327 -RDPEVCLKLVLMYIEEGLVEKTLDVVESMKNAK 359 (603)
Q Consensus 327 -~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 359 (603)
.-..+|--|...|...|+.++|..+|+-....+
T Consensus 234 e~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 234 EHLTETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred HHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 013456667777777888888888877666544
|
|
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.01 E-value=26 Score=34.99 Aligned_cols=94 Identities=7% Similarity=-0.042 Sum_probs=71.1
Q ss_pred HHHHHHHHHhhCCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHccCChHHHHHHHHH
Q 007461 99 LAYDYYNEAKKLPEFRPEKSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVAS-CVRARKFKIANTLLQV 177 (603)
Q Consensus 99 ~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~-~~~~~~~~~a~~~~~~ 177 (603)
....+|+.+... +..|+..|..-+..+-+.+.+.+...+|..|...+ +.++..|-....- |-.+.+++.|+.+|..
T Consensus 89 rIv~lyr~at~r--f~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~H-p~~~dLWI~aA~wefe~n~ni~saRalflr 165 (568)
T KOG2396|consen 89 RIVFLYRRATNR--FNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKH-PNNPDLWIYAAKWEFEINLNIESARALFLR 165 (568)
T ss_pred HHHHHHHHHHHh--cCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCchhHHhhhhhHHhhccchHHHHHHHHH
Confidence 467778888764 57799999999999999998999999999999886 5555555443332 4444558999999999
Q ss_pred HHhcCCcchhhHHHHHhh
Q 007461 178 FITDGEIALLAFNSAMGG 195 (603)
Q Consensus 178 ~~~~~~~~~~~~~~l~~~ 195 (603)
-.+.++.++..|-...+.
T Consensus 166 gLR~npdsp~Lw~eyfrm 183 (568)
T KOG2396|consen 166 GLRFNPDSPKLWKEYFRM 183 (568)
T ss_pred HhhcCCCChHHHHHHHHH
Confidence 988888777776655443
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=88.96 E-value=18 Score=32.89 Aligned_cols=189 Identities=12% Similarity=0.152 Sum_probs=95.9
Q ss_pred CHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHH---CCCC--CCHHHHHHHHHHHHccCCH
Q 007461 236 DSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKE---KGIL--EDPSIYASLICSFASITEV 310 (603)
Q Consensus 236 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~g~~--p~~~~~~~ll~~~~~~g~~ 310 (603)
++++|..-|.++.+.......+.-.+.-.+|....+.|++++..+.|.+|+. ..+. -...+.++++...+...+.
T Consensus 42 ~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m 121 (440)
T KOG1464|consen 42 EPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNM 121 (440)
T ss_pred CHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhh
Confidence 5555665555555443333222223344556666666666666666666542 1111 1344566666666555555
Q ss_pred HHHHHHHHHHHHc-----CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-----------CCHhhHHHHHHHH
Q 007461 311 KLAEELFKEAEEK-----GMLRDPEVCLKLVLMYIEEGLVEKTLDVVESMKNAKLK-----------ISDCISCAIVNGF 374 (603)
Q Consensus 311 ~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-----------~~~~~~~~li~~~ 374 (603)
+...++++.-.+. +-..=-.+-+.|...|...|++.+..+++.++....-. .-..+|..=|..|
T Consensus 122 ~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmY 201 (440)
T KOG1464|consen 122 DLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMY 201 (440)
T ss_pred HHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhh
Confidence 5555544433221 00001112335666677777777777777766532110 1123466667777
Q ss_pred HhcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHH-----HhcCChHHHHH-HHHHH
Q 007461 375 SKRRGYWAAVKVYEQLISQG-CIPGQVTYASIINAY-----CRIALYSKAEK-VFIEM 425 (603)
Q Consensus 375 ~~~~~~~~a~~~~~~m~~~g-~~p~~~~~~~ll~~~-----~~~g~~~~a~~-~~~~~ 425 (603)
....+-.....+|++...-. --|.+.. ..+|+-| .+.|++++|.. +|+..
T Consensus 202 T~qKnNKkLK~lYeqalhiKSAIPHPlI-mGvIRECGGKMHlreg~fe~AhTDFFEAF 258 (440)
T KOG1464|consen 202 TEQKNNKKLKALYEQALHIKSAIPHPLI-MGVIRECGGKMHLREGEFEKAHTDFFEAF 258 (440)
T ss_pred hhhcccHHHHHHHHHHHHhhccCCchHH-HhHHHHcCCccccccchHHHHHhHHHHHH
Confidence 77777777777777654322 1233332 2344444 34567776643 34443
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=88.91 E-value=6.3 Score=39.96 Aligned_cols=131 Identities=12% Similarity=0.063 Sum_probs=79.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHh
Q 007461 402 YASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGR 481 (603)
Q Consensus 402 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 481 (603)
.+.+..-+.+.|..++|+++ .+|...- .....+.|+++.|.++..+.. +..-|..|.++...
T Consensus 617 rt~va~Fle~~g~~e~AL~~---------s~D~d~r---Felal~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~ 678 (794)
T KOG0276|consen 617 RTKVAHFLESQGMKEQALEL---------STDPDQR---FELALKLGRLDIAFDLAVEAN------SEVKWRQLGDAALS 678 (794)
T ss_pred hhhHHhHhhhccchHhhhhc---------CCChhhh---hhhhhhcCcHHHHHHHHHhhc------chHHHHHHHHHHhh
Confidence 34455555555655555432 2232221 223345677777777665543 55668888888888
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Q 007461 482 AKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNRAREFDMCVKFYNEFRMNGGVIDRAIAGIMVGVFSKLSQIEELVKL 561 (603)
Q Consensus 482 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 561 (603)
.+++..|.+.|.+..+ |..|+-.+...|+-+....+-....+.|.. |.-.-+|...|+++++.++
T Consensus 679 ~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~~------N~AF~~~~l~g~~~~C~~l 743 (794)
T KOG0276|consen 679 AGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGKN------NLAFLAYFLSGDYEECLEL 743 (794)
T ss_pred cccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhccc------chHHHHHHHcCCHHHHHHH
Confidence 8888888888777642 345566666777766666666666555432 2233356677888888887
Q ss_pred HHHH
Q 007461 562 LQDM 565 (603)
Q Consensus 562 ~~~m 565 (603)
+.+-
T Consensus 744 Li~t 747 (794)
T KOG0276|consen 744 LIST 747 (794)
T ss_pred HHhc
Confidence 7544
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=88.87 E-value=0.52 Score=27.50 Aligned_cols=32 Identities=13% Similarity=0.279 Sum_probs=19.4
Q ss_pred HHHHhhCCCCCCCHHhHHHHHHHHHhcCCHHHHH
Q 007461 104 YNEAKKLPEFRPEKSTLKLLIRYLVQSKKWDSIV 137 (603)
Q Consensus 104 ~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 137 (603)
|+++++.. +-+...|+.+...|...|++++|+
T Consensus 2 y~kAie~~--P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELN--PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHC--CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 34444432 445666777777777777776664
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=88.55 E-value=6 Score=36.65 Aligned_cols=105 Identities=15% Similarity=0.118 Sum_probs=71.4
Q ss_pred CCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCc---chhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhh
Q 007461 147 NVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEI---ALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGC 223 (603)
Q Consensus 147 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~ 223 (603)
|.+....+-..++..-....++++++..+-++...... ...+-.+.++.+.+ -++++++.++..=++.|+-||.++
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlllk-y~pq~~i~~l~npIqYGiF~dqf~ 137 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLLK-YDPQKAIYTLVNPIQYGIFPDQFT 137 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHHc-cChHHHHHHHhCcchhccccchhh
Confidence 33444455555555555567778888877777654331 11111222333332 367788988888888999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 007461 224 YCQIMEAYYKIGDSEKVAALFLECKSRKL 252 (603)
Q Consensus 224 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 252 (603)
++.+|+.+.+.+++.+|..+...|..+..
T Consensus 138 ~c~l~D~flk~~n~~~aa~vvt~~~~qe~ 166 (418)
T KOG4570|consen 138 FCLLMDSFLKKENYKDAASVVTEVMMQEA 166 (418)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 99999999999999999888877766543
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=88.49 E-value=13 Score=30.96 Aligned_cols=16 Identities=19% Similarity=0.302 Sum_probs=6.9
Q ss_pred hcCCHHHHHHHHHHHH
Q 007461 481 RAKNLRQVEKLWKEME 496 (603)
Q Consensus 481 ~~g~~~~a~~~~~~m~ 496 (603)
..|++.+|..+|+++.
T Consensus 56 ~r~~w~dA~rlLr~l~ 71 (160)
T PF09613_consen 56 VRGDWDDALRLLRELE 71 (160)
T ss_pred HhCCHHHHHHHHHHHh
Confidence 3444444444444443
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=88.29 E-value=4.7 Score=40.83 Aligned_cols=149 Identities=13% Similarity=0.067 Sum_probs=90.4
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHH
Q 007461 233 KIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEKGILEDPSIYASLICSFASITEVKL 312 (603)
Q Consensus 233 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~ 312 (603)
-.|+++.|..++..+.+ ...+.++..+.+.|..++|+++ .+|.... .....+.|+++.
T Consensus 598 mrrd~~~a~~vLp~I~k----------~~rt~va~Fle~~g~~e~AL~~---------s~D~d~r---Felal~lgrl~i 655 (794)
T KOG0276|consen 598 LRRDLEVADGVLPTIPK----------EIRTKVAHFLESQGMKEQALEL---------STDPDQR---FELALKLGRLDI 655 (794)
T ss_pred hhccccccccccccCch----------hhhhhHHhHhhhccchHhhhhc---------CCChhhh---hhhhhhcCcHHH
Confidence 34666666665544431 2356677777777877777765 2332211 123346778888
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007461 313 AEELFKEAEEKGMLRDPEVCLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLIS 392 (603)
Q Consensus 313 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 392 (603)
|.++..+. .+..-|..|.++..+.|++..|.+.|....+ |..|+-.+...|+.+....+-....+
T Consensus 656 A~~la~e~------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~ 720 (794)
T KOG0276|consen 656 AFDLAVEA------NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKK 720 (794)
T ss_pred HHHHHHhh------cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHh
Confidence 87776553 2566677888888888888888877776553 44566666666666655555555555
Q ss_pred cCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 007461 393 QGCIPGQVTYASIINAYCRIALYSKAEKVFIE 424 (603)
Q Consensus 393 ~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 424 (603)
.|. .|...-+|...|+++++.+++.+
T Consensus 721 ~g~------~N~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 721 QGK------NNLAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred hcc------cchHHHHHHHcCCHHHHHHHHHh
Confidence 542 23333455566777777766654
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=88.07 E-value=6.5 Score=34.14 Aligned_cols=75 Identities=15% Similarity=0.121 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccCCHHHH
Q 007461 203 YSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEA 278 (603)
Q Consensus 203 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 278 (603)
+.|+..|-.+...+.--++.....|...|. ..|.+++..++.+..+.....+.+|+..+.+|+..+.+.|+++.|
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 455555655555544434444444444443 456666666666665544444344556666666666666666655
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=87.79 E-value=15 Score=30.69 Aligned_cols=15 Identities=13% Similarity=0.111 Sum_probs=6.7
Q ss_pred cCCHHHHHHHHHHHH
Q 007461 130 SKKWDSIVSLSEDFK 144 (603)
Q Consensus 130 ~~~~~~a~~~~~~~~ 144 (603)
.++.+++..+++.+.
T Consensus 23 ~~~~~D~e~lL~ALr 37 (160)
T PF09613_consen 23 LGDPDDAEALLDALR 37 (160)
T ss_pred cCChHHHHHHHHHHH
Confidence 344444444444444
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=87.64 E-value=7.7 Score=31.77 Aligned_cols=62 Identities=10% Similarity=0.221 Sum_probs=42.6
Q ss_pred hHHHHHHHHH---HhcCCHHHHHHHHHHHHhCCCCCCHH---HHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 007461 470 WIYNSLMDMH---GRAKNLRQVEKLWKEMERRKVTPDKV---SYTTVISAYNRAREFDMCVKFYNEFRMNGG 535 (603)
Q Consensus 470 ~~~~~li~~~---~~~g~~~~a~~~~~~m~~~~~~p~~~---~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 535 (603)
.+.+.||... ...+++++++.+++.|.- +.|+.. ++... .+...|+|++|.++|+++.+.+.
T Consensus 8 ~iv~gLi~~~~~aL~~~d~~D~e~lLdALrv--LrP~~~e~d~~dg~--l~i~rg~w~eA~rvlr~l~~~~~ 75 (153)
T TIGR02561 8 RLLGGLIEVLMYALRSADPYDAQAMLDALRV--LRPNLKELDMFDGW--LLIARGNYDEAARILRELLSSAG 75 (153)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--hCCCccccchhHHH--HHHHcCCHHHHHHHHHhhhccCC
Confidence 3444555443 347899999999999873 455543 33333 36788999999999999887643
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=87.55 E-value=25 Score=33.00 Aligned_cols=22 Identities=5% Similarity=0.140 Sum_probs=10.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHH
Q 007461 474 SLMDMHGRAKNLRQVEKLWKEME 496 (603)
Q Consensus 474 ~li~~~~~~g~~~~a~~~~~~m~ 496 (603)
..+.+++..|+. +|...+..+.
T Consensus 240 ~a~~ALg~ig~~-~a~p~L~~l~ 261 (280)
T PRK09687 240 LIIEAAGELGDK-TLLPVLDTLL 261 (280)
T ss_pred HHHHHHHhcCCH-hHHHHHHHHH
Confidence 344445555553 4555555544
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=86.96 E-value=11 Score=34.99 Aligned_cols=47 Identities=17% Similarity=0.270 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007461 450 IRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEME 496 (603)
Q Consensus 450 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 496 (603)
+++++.++..-...|+-||..+++.+|+.+.+.+++.+|..+...|.
T Consensus 116 pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~ 162 (418)
T KOG4570|consen 116 PQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVM 162 (418)
T ss_pred hHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 44444444444444555555555555555555555555555444443
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=86.78 E-value=16 Score=29.99 Aligned_cols=51 Identities=8% Similarity=-0.209 Sum_probs=26.1
Q ss_pred cCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHhC
Q 007461 165 ARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSA 215 (603)
Q Consensus 165 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 215 (603)
.++.+++..+++.+.-..|.....-..-...+...|++.+|+.+|+++.+.
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhcc
Confidence 455555555555555544433333333333445555666666666655554
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=86.49 E-value=0.28 Score=40.73 Aligned_cols=84 Identities=10% Similarity=0.132 Sum_probs=44.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 007461 475 LMDMHGRAKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNRAREFDMCVKFYNEFRMNGGVIDRAIAGIMVGVFSKLSQ 554 (603)
Q Consensus 475 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 554 (603)
++..+.+.+.+.....+++.+...+..-+....+.++..|++.++.++..++++.. +..-...++..|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~-------~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS-------NNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS-------SSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc-------cccCHHHHHHHHHhcch
Confidence 34555555666666666666665443444555666666666665556665555511 11112234555556666
Q ss_pred HHHHHHHHHHH
Q 007461 555 IEELVKLLQDM 565 (603)
Q Consensus 555 ~~~A~~~~~~m 565 (603)
+++|.-++.++
T Consensus 86 ~~~a~~Ly~~~ 96 (143)
T PF00637_consen 86 YEEAVYLYSKL 96 (143)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHHHHHc
Confidence 66666666554
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=86.44 E-value=7 Score=29.17 Aligned_cols=49 Identities=10% Similarity=0.247 Sum_probs=33.9
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007461 484 NLRQVEKLWKEMERRKVTPDKVSYTTVISAYNRAREFDMCVKFYNEFRM 532 (603)
Q Consensus 484 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 532 (603)
+.-++.+-++.+....+-|++....+.+++|.+.+|+..|+++++-.+.
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~ 70 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKD 70 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 4445566666666666777777777777777777777777777776653
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=85.35 E-value=6.3 Score=29.76 Aligned_cols=47 Identities=13% Similarity=0.217 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 007461 382 AAVKVYEQLISQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQK 428 (603)
Q Consensus 382 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 428 (603)
+..+-++.+....+.|++....+.+.+|.+.+++..|.++|+.++.+
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K 74 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK 74 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 44444555555556666666666666666666666666666666543
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=84.50 E-value=57 Score=34.27 Aligned_cols=178 Identities=20% Similarity=0.187 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHH----H-HHccCCHHHHHHHHHHHHH-------cCCCCCHHHHHHHHHHHHHc
Q 007461 275 AFEALKFFRDMKEKGILEDPSIYASLIC----S-FASITEVKLAEELFKEAEE-------KGMLRDPEVCLKLVLMYIEE 342 (603)
Q Consensus 275 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~----~-~~~~g~~~~a~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~ 342 (603)
..+|.++++...+.|. ...-..+.. . .....|.+.|..+++.+.+ .+ ++.....+..+|.+.
T Consensus 228 ~~~a~~~~~~~a~~g~---~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g 301 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGH---SEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQG 301 (552)
T ss_pred hhHHHHHHHHHHhhcc---hHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcC
Confidence 4567777777777652 222222221 1 3345678888888877766 33 333455556666553
Q ss_pred C-----CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh---cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--hc
Q 007461 343 G-----LVEKTLDVVESMKNAKLKISDCISCAIVNGFSK---RRGYWAAVKVYEQLISQGCIPGQVTYASIINAYC--RI 412 (603)
Q Consensus 343 g-----~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~---~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~--~~ 412 (603)
. +.+.|..++...-+.+. |+.... +...+.. ..+...|.++|...-..|.. ...-+..++-... -.
T Consensus 302 ~~~~~~d~~~A~~~~~~aA~~g~-~~a~~~--lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~-~A~~~la~~y~~G~gv~ 377 (552)
T KOG1550|consen 302 LGVEKIDYEKALKLYTKAAELGN-PDAQYL--LGVLYETGTKERDYRRAFEYYSLAAKAGHI-LAIYRLALCYELGLGVE 377 (552)
T ss_pred CCCccccHHHHHHHHHHHHhcCC-chHHHH--HHHHHHcCCccccHHHHHHHHHHHHHcCCh-HHHHHHHHHHHhCCCcC
Confidence 2 44556666666666655 232211 1111111 13455666666666666532 1111111111111 12
Q ss_pred CChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcC
Q 007461 413 ALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKG 464 (603)
Q Consensus 413 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 464 (603)
.+...|..++.+..+.| .|...--...+..+.. ++++.+.-.+..+.+.|
T Consensus 378 r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g 427 (552)
T KOG1550|consen 378 RNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELG 427 (552)
T ss_pred CCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhh
Confidence 34566666666666665 3322222222333333 55555555555555543
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=84.38 E-value=36 Score=31.93 Aligned_cols=200 Identities=13% Similarity=0.051 Sum_probs=113.2
Q ss_pred hHHHHHHHHHhcCCH----HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh-----HHHHHHHHHHHHcCCCcCHhh
Q 007461 366 ISCAIVNGFSKRRGY----WAAVKVYEQLISQGCIPGQVTYASIINAYCRIALY-----SKAEKVFIEMQQKGFDKCVVA 436 (603)
Q Consensus 366 ~~~~li~~~~~~~~~----~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~-----~~a~~~~~~~~~~~~~~~~~~ 436 (603)
.-...+.++.+.|+. .++...+..+... .++...-...+.++...+.. ..+...+..... .++..+
T Consensus 70 vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~~~V 144 (280)
T PRK09687 70 ERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAF---DKSTNV 144 (280)
T ss_pred HHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhh---CCCHHH
Confidence 334444555555542 3455555555332 35555555555555544321 122233322222 235556
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 007461 437 YSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAK-NLRQVEKLWKEMERRKVTPDKVSYTTVISAYN 515 (603)
Q Consensus 437 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 515 (603)
-...+.++++.++ .++...+-.+.+ .+|..+-...+.+++..+ +...+...+..+.. .+|...-...+.++.
T Consensus 145 R~~a~~aLg~~~~-~~ai~~L~~~L~---d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg 217 (280)
T PRK09687 145 RFAVAFALSVIND-EAAIPLLINLLK---DPNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLA 217 (280)
T ss_pred HHHHHHHHhccCC-HHHHHHHHHHhc---CCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHH
Confidence 6667777777776 456666666665 345555555566666543 23456666666553 346666777777888
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 007461 516 RAREFDMCVKFYNEFRMNGGVIDRAIAGIMVGVFSKLSQIEELVKLLQDMKSEGTKLDERLYHSAMNALRD 586 (603)
Q Consensus 516 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~a~~~ 586 (603)
+.|+ ..|+..+-+..+.+ + .....+.++...|.. +|+..+.++.+. .||..+-...+.+|.+
T Consensus 218 ~~~~-~~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~~~ 279 (280)
T PRK09687 218 LRKD-KRVLSVLIKELKKG---T--VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKLKR 279 (280)
T ss_pred ccCC-hhHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHHhc
Confidence 8877 45666666555542 2 233567777888874 788888888764 3577777776766643
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=84.32 E-value=61 Score=34.48 Aligned_cols=170 Identities=10% Similarity=0.092 Sum_probs=89.6
Q ss_pred HHHHHccCChHHHHHHHHHHHhcCCc--chhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCC
Q 007461 159 VASCVRARKFKIANTLLQVFITDGEI--ALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGD 236 (603)
Q Consensus 159 l~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~ 236 (603)
++-+.+.+.+++|.++-+......+. ....+...+..+.-.|++++|-...-.|... +..-|..-+..+...++
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~~~ 438 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAELDQ 438 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhccccc
Confidence 44455667778887776655443332 4456777777888888888888777777653 34455555555555555
Q ss_pred HHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Q 007461 237 SEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEKGILEDPSIYASLICSFASITEVKLAEEL 316 (603)
Q Consensus 237 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~ 316 (603)
......++ +.... ..+...|..++..+.. .+ ..-|.+.+.. ..++...-..++++.-
T Consensus 439 l~~Ia~~l---Pt~~~---rL~p~vYemvLve~L~-~~----~~~F~e~i~~-Wp~~Lys~l~iisa~~----------- 495 (846)
T KOG2066|consen 439 LTDIAPYL---PTGPP---RLKPLVYEMVLVEFLA-SD----VKGFLELIKE-WPGHLYSVLTIISATE----------- 495 (846)
T ss_pred cchhhccC---CCCCc---ccCchHHHHHHHHHHH-HH----HHHHHHHHHh-CChhhhhhhHHHhhcc-----------
Confidence 44333322 21111 1123467777776665 22 2223333322 1222222222222110
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 007461 317 FKEAEEKGMLRDPEVCLKLVLMYIEEGLVEKTLDVVESMKNA 358 (603)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 358 (603)
.+..+. .-+......|+..|...++++.|+.++-..++.
T Consensus 496 -~q~~q~--Se~~~L~e~La~LYl~d~~Y~~Al~~ylklk~~ 534 (846)
T KOG2066|consen 496 -PQIKQN--SESTALLEVLAHLYLYDNKYEKALPIYLKLQDK 534 (846)
T ss_pred -hHHHhh--ccchhHHHHHHHHHHHccChHHHHHHHHhccCh
Confidence 111111 012233334888899999999998888777654
|
|
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=83.88 E-value=7.7 Score=33.98 Aligned_cols=61 Identities=18% Similarity=0.072 Sum_probs=33.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcC
Q 007461 121 KLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDG 182 (603)
Q Consensus 121 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 182 (603)
+.-+..+.+.+...+++...++-++.. +.|.-....++..++-.|++++|..-++..-...
T Consensus 5 ~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~ 65 (273)
T COG4455 5 RDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLS 65 (273)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcC
Confidence 344455555666666666666555443 3444455555666666666666655555544443
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=83.55 E-value=11 Score=32.04 Aligned_cols=74 Identities=15% Similarity=0.097 Sum_probs=40.1
Q ss_pred HHHHHHHHHhcCCcchhhHHHHHhhhhhcC-----------cHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCHHH
Q 007461 171 ANTLLQVFITDGEIALLAFNSAMGGYNKLH-----------MYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEK 239 (603)
Q Consensus 171 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----------~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~ 239 (603)
|+.-|++.+..+|....++..+..+|...+ .+++|.+.|++..+ ..|+..+|+.-+.... +
T Consensus 54 AisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~--~~P~ne~Y~ksLe~~~------k 125 (186)
T PF06552_consen 54 AISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVD--EDPNNELYRKSLEMAA------K 125 (186)
T ss_dssp HHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHHHHHH------T
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHh--cCCCcHHHHHHHHHHH------h
Confidence 333444444444544455555555444332 25666677777666 4688888888777663 4
Q ss_pred HHHHHHHHHhCCC
Q 007461 240 VAALFLECKSRKL 252 (603)
Q Consensus 240 a~~~~~~~~~~~~ 252 (603)
|-++..++...+.
T Consensus 126 ap~lh~e~~~~~~ 138 (186)
T PF06552_consen 126 APELHMEIHKQGL 138 (186)
T ss_dssp HHHHHHHHHHSSS
T ss_pred hHHHHHHHHHHHh
Confidence 5666666655543
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=83.13 E-value=21 Score=31.07 Aligned_cols=72 Identities=8% Similarity=0.080 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCcHHHH
Q 007461 521 DMCVKFYNEFRMNGGVIDRAIAGIMVGVFSKLSQIEELVKLLQDMKSE---GTKLDERLYHSAMNALRDAGLQMQA 593 (603)
Q Consensus 521 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~---g~~~~~~~~~~ll~a~~~~g~~~~a 593 (603)
+.|.+.|-.+...+.--++...-.|...|. ..+.++++.++-+..+. +-.+|...+.+|...+.+.|+.++|
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 344444444443333323333333333332 33444555554444432 2234455555555555555555444
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=83.00 E-value=2.9 Score=24.03 Aligned_cols=27 Identities=26% Similarity=0.314 Sum_probs=16.8
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHH
Q 007461 261 MYKILCDSLGKSGRAFEALKFFRDMKE 287 (603)
Q Consensus 261 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 287 (603)
+|..+...|...|++++|+..|++.++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 466666666666666666666666654
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=82.87 E-value=31 Score=29.97 Aligned_cols=91 Identities=15% Similarity=0.106 Sum_probs=63.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCC-H----HHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhc
Q 007461 125 RYLVQSKKWDSIVSLSEDFKIYNVLPD-A----HTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKL 199 (603)
Q Consensus 125 ~~~~~~~~~~~a~~~~~~~~~~~~~~~-~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 199 (603)
.-+.+.|++++|..-|......- ++. . ..|.--..++.+.+.++.|+.-..+.++.++....+..--..+|-+.
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~c-p~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ 181 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESC-PSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKM 181 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhC-ccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhh
Confidence 45667888888888888877653 222 1 23333345566778888888888887777776666655556678888
Q ss_pred CcHHHHHHHHHHHHhCC
Q 007461 200 HMYYSTILVYEKMKSAG 216 (603)
Q Consensus 200 ~~~~~a~~~~~~m~~~~ 216 (603)
..+++|++-|..+.+..
T Consensus 182 ek~eealeDyKki~E~d 198 (271)
T KOG4234|consen 182 EKYEEALEDYKKILESD 198 (271)
T ss_pred hhHHHHHHHHHHHHHhC
Confidence 88888888888887753
|
|
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=82.83 E-value=40 Score=31.23 Aligned_cols=43 Identities=14% Similarity=0.010 Sum_probs=30.8
Q ss_pred hHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCCHHHHHHHHHH
Q 007461 415 YSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAK 459 (603)
Q Consensus 415 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 459 (603)
..+|.++|.-+.+..-+ ..+-+.++.++....+..+|...+..
T Consensus 149 s~KA~ELFayLv~hkgk--~v~~~~~ie~lwpe~D~kka~s~lhT 191 (361)
T COG3947 149 SRKALELFAYLVEHKGK--EVTSWEAIEALWPEKDEKKASSLLHT 191 (361)
T ss_pred hhHHHHHHHHHHHhcCC--cccHhHHHHHHccccchhhHHHHHHH
Confidence 46788999888775322 35556777888888888888777654
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=82.32 E-value=74 Score=33.97 Aligned_cols=196 Identities=13% Similarity=0.061 Sum_probs=117.7
Q ss_pred hhchhHHHHHHhcCCCChHHHHHHHHHHhhCCCCCCCHH--hHHHHHHHHH-hcCCHHHHHHHHHHHHhCCCCCCHH---
Q 007461 80 AKKFDSFLHGMLKDPQTQELAYDYYNEAKKLPEFRPEKS--TLKLLIRYLV-QSKKWDSIVSLSEDFKIYNVLPDAH--- 153 (603)
Q Consensus 80 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~--~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~--- 153 (603)
...|..+|.. |++.++.+.+...++|..+ ++-.++..+. ...+.+.|...+++.....-.++..
T Consensus 30 l~~Y~kLI~~----------ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k 99 (608)
T PF10345_consen 30 LKQYYKLIAT----------AIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLK 99 (608)
T ss_pred HHHHHHHHHH----------HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHH
Confidence 3446666665 7888888886555555444 4555777776 5789999999999876554333221
Q ss_pred --HHHHHHHHHHccCChHHHHHHHHHHHhcCCc-----chhhHHHH-HhhhhhcCcHHHHHHHHHHHHhCC---CCCChh
Q 007461 154 --TCSRLVASCVRARKFKIANTLLQVFITDGEI-----ALLAFNSA-MGGYNKLHMYYSTILVYEKMKSAG---IVLDSG 222 (603)
Q Consensus 154 --~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~l-~~~~~~~~~~~~a~~~~~~m~~~~---~~p~~~ 222 (603)
+...++..+.+.+... |...+++..+.-.. -...|..+ +..+...+++..|++.++.+...- ..|-..
T Consensus 100 ~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~ 178 (608)
T PF10345_consen 100 FRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVF 178 (608)
T ss_pred HHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHH
Confidence 2234455566655544 88888886654332 22233333 333333479999999998877642 233444
Q ss_pred hHHHHHHHHH--HcCCHHHHHHHHHHHHhC------CCCCCCccHHHHHHHHHHH--hccCCHHHHHHHHHHHH
Q 007461 223 CYCQIMEAYY--KIGDSEKVAALFLECKSR------KLDSTPFSTHMYKILCDSL--GKSGRAFEALKFFRDMK 286 (603)
Q Consensus 223 ~~~~ll~~~~--~~g~~~~a~~~~~~~~~~------~~~~~~~~~~~~~~li~~~--~~~g~~~~A~~~~~~m~ 286 (603)
++..++.+.. +.+..+.+.+.++++... +.....+-..+|..+++.+ ...|+++.+...++++.
T Consensus 179 v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 179 VLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred HHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5555555544 445566677776665321 1222344466777777665 45677777777766664
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=82.30 E-value=3.1 Score=25.23 Aligned_cols=27 Identities=22% Similarity=0.303 Sum_probs=17.9
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHH
Q 007461 260 HMYKILCDSLGKSGRAFEALKFFRDMK 286 (603)
Q Consensus 260 ~~~~~li~~~~~~g~~~~A~~~~~~m~ 286 (603)
.+++.|...|...|++++|.+++++..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 356677777777777777777776664
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=81.25 E-value=4.1 Score=24.63 Aligned_cols=28 Identities=18% Similarity=0.178 Sum_probs=19.1
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 007461 118 STLKLLIRYLVQSKKWDSIVSLSEDFKI 145 (603)
Q Consensus 118 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 145 (603)
.+++.|...|...|++++|+.++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4567777777777777777777776653
|
|
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=81.11 E-value=83 Score=33.72 Aligned_cols=232 Identities=7% Similarity=-0.042 Sum_probs=113.4
Q ss_pred CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHH--HHHHHHHhcCCcchhhHHH
Q 007461 114 RPEKSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIAN--TLLQVFITDGEIALLAFNS 191 (603)
Q Consensus 114 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~--~~~~~~~~~~~~~~~~~~~ 191 (603)
+.+...-...+.++...|+.++|....+.+-..| ...+..++.++..+.+.|.+.... +=++.+...+ +...-..
T Consensus 126 p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g-~~~p~~cd~l~~~~~~~g~lt~~d~w~R~~~al~~~--~~~lA~~ 202 (644)
T PRK11619 126 PKPVEARCNYYYAKWATGQQQEAWQGAKELWLTG-KSLPNACDKLFSVWQQSGKQDPLAYLERIRLAMKAG--NTGLVTY 202 (644)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-CCCChHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCC--CHHHHHH
Confidence 3455555667777777787777766666665555 345566667777666555443321 1111111111 1111111
Q ss_pred HHhhhhh------------cCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH--HcCCHHHHHHHHHHHHhCCCCCCCc
Q 007461 192 AMGGYNK------------LHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYY--KIGDSEKVAALFLECKSRKLDSTPF 257 (603)
Q Consensus 192 l~~~~~~------------~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~--~~g~~~~a~~~~~~~~~~~~~~~~~ 257 (603)
+...+.. ..+...+...+. .+.|+...-..++-++. ...+.+.|..++........-....
T Consensus 203 l~~~l~~~~~~~a~a~~al~~~p~~~~~~~~-----~~~~~~~~~~~~~~~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~ 277 (644)
T PRK11619 203 LAKQLPADYQTIASALIKLQNDPNTVETFAR-----TTGPTDFTRQMAAVAFASVARQDAENARLMIPSLVRAQKLNEDQ 277 (644)
T ss_pred HHHhcChhHHHHHHHHHHHHHCHHHHHHHhh-----ccCCChhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHhcCCCHHH
Confidence 1111100 001111111111 11122211111222222 2346688888888765444322221
Q ss_pred cHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 007461 258 STHMYKILCDSLGKSGRAFEALKFFRDMKEKGILEDPSIYASLICSFASITEVKLAEELFKEAEEKGMLRDPEVCLKLVL 337 (603)
Q Consensus 258 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 337 (603)
...++..+.......+...++...++...... .|......-+......++++.+...+..|-.... ....-.--+.+
T Consensus 278 ~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~~-~~~rw~YW~aR 354 (644)
T PRK11619 278 RQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGLNTWLARLPMEAK-EKDEWRYWQAD 354 (644)
T ss_pred HHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHHHHHHHhcCHhhc-cCHhhHHHHHH
Confidence 23345555444444433556666665543321 2444455555555678888888777777644321 23333334666
Q ss_pred HHHHcCCHHHHHHHHHHHH
Q 007461 338 MYIEEGLVEKTLDVVESMK 356 (603)
Q Consensus 338 ~~~~~g~~~~a~~~~~~~~ 356 (603)
++...|+.++|...|..+.
T Consensus 355 a~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 355 LLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred HHHHcCCHHHHHHHHHHHh
Confidence 6667888888888888764
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=81.03 E-value=4.9 Score=23.04 Aligned_cols=25 Identities=16% Similarity=0.298 Sum_probs=10.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 007461 367 SCAIVNGFSKRRGYWAAVKVYEQLI 391 (603)
Q Consensus 367 ~~~li~~~~~~~~~~~a~~~~~~m~ 391 (603)
|..+...+...|++++|+..|++..
T Consensus 4 ~~~~g~~~~~~~~~~~A~~~~~~al 28 (34)
T PF00515_consen 4 YYNLGNAYFQLGDYEEALEYYQRAL 28 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHH
Confidence 3334444444444444444444433
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=80.72 E-value=4.7 Score=22.98 Aligned_cols=28 Identities=11% Similarity=0.094 Sum_probs=19.7
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 007461 541 IAGIMVGVFSKLSQIEELVKLLQDMKSE 568 (603)
Q Consensus 541 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 568 (603)
.|..+...+...|++++|++.+++..+.
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 4556777777888888888888777653
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=80.41 E-value=5.2 Score=22.80 Aligned_cols=24 Identities=13% Similarity=0.034 Sum_probs=9.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHH
Q 007461 121 KLLIRYLVQSKKWDSIVSLSEDFK 144 (603)
Q Consensus 121 ~~l~~~~~~~~~~~~a~~~~~~~~ 144 (603)
..+...+...|++++|++.+++..
T Consensus 5 ~~lg~~~~~~~~~~~A~~~~~~al 28 (34)
T PF07719_consen 5 YYLGQAYYQLGNYEEAIEYFEKAL 28 (34)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHH
Confidence 333444444444444444444433
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=80.32 E-value=69 Score=32.32 Aligned_cols=164 Identities=10% Similarity=0.144 Sum_probs=80.9
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhHHHHHH
Q 007461 397 PGQVTYASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLM 476 (603)
Q Consensus 397 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li 476 (603)
.|.....+++..+...-.+.-.+.+-.+|...| -+...|..+++.|... ..++-..+|+++.+..+ .|++.-..|.
T Consensus 64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~df-nDvv~~ReLa 139 (711)
T COG1747 64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF-NDVVIGRELA 139 (711)
T ss_pred ccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc-hhHHHHHHHH
Confidence 344455556666666555666666666666554 2345566666666555 45555666666655422 2333333343
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHH
Q 007461 477 DMHGRAKNLRQVEKLWKEMERRKVTPDK------VSYTTVISAYNRAREFDMCVKFYNEFRMN-GGVIDRAIAGIMVGVF 549 (603)
Q Consensus 477 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~------~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~ 549 (603)
.-|.+ ++...+..+|.++... +-|.. ..|.-+... -..+.+..+.+..++... |...-...+.-+-.-|
T Consensus 140 ~~yEk-ik~sk~a~~f~Ka~yr-fI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Y 215 (711)
T COG1747 140 DKYEK-IKKSKAAEFFGKALYR-FIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKY 215 (711)
T ss_pred HHHHH-hchhhHHHHHHHHHHH-hcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHh
Confidence 33433 5556666666555433 11211 123333221 123455555555555432 2222333444455556
Q ss_pred HccCCHHHHHHHHHHHHhC
Q 007461 550 SKLSQIEELVKLLQDMKSE 568 (603)
Q Consensus 550 ~~~g~~~~A~~~~~~m~~~ 568 (603)
....++.+|+++++.+.+.
T Consensus 216 s~~eN~~eai~Ilk~il~~ 234 (711)
T COG1747 216 SENENWTEAIRILKHILEH 234 (711)
T ss_pred ccccCHHHHHHHHHHHhhh
Confidence 6666666666666655543
|
|
| >KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=80.24 E-value=99 Score=34.07 Aligned_cols=39 Identities=8% Similarity=0.020 Sum_probs=25.8
Q ss_pred HHHccCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHh
Q 007461 443 MYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGR 481 (603)
Q Consensus 443 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 481 (603)
.|.+....+-+..+++.+....-.++....+.++..|+.
T Consensus 600 ~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 600 NYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred HHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 355566677777788877765445566666777766654
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 68.7 bits (166), Expect = 3e-12
Identities = 19/200 (9%), Positives = 59/200 (29%), Gaps = 4/200 (2%)
Query: 397 PGQVTYASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWL 456
P + A ++ + + Q + T ++ A L
Sbjct: 90 PWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHL 149
Query: 457 VAKMK---AKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDKVSYTTVISA 513
+ K + +YN++M R +++ + ++ +TPD +SY +
Sbjct: 150 LVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQC 209
Query: 514 YNRAREFDMCVKFY-NEFRMNGGVIDRAIAGIMVGVFSKLSQIEELVKLLQDMKSEGTKL 572
R + ++ + G + +++ + + ++ + K+
Sbjct: 210 MGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLP 269
Query: 573 DERLYHSAMNALRDAGLQMQ 592
+ + ++
Sbjct: 270 PPVNTSKLLRDVYAKDGRVS 289
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 64.1 bits (154), Expect = 1e-10
Identities = 18/151 (11%), Positives = 52/151 (34%), Gaps = 1/151 (0%)
Query: 384 VKVYEQLISQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAM 443
+ V+ + + Y +++ + R + + V ++ G +++Y++ +
Sbjct: 150 LVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQC 209
Query: 444 YGKTGRIRDAMW-LVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTP 502
G+ + + + +M +G + L+ RA L+ V K+ P
Sbjct: 210 MGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLP 269
Query: 503 DKVSYTTVISAYNRAREFDMCVKFYNEFRMN 533
V+ + ++ K + +
Sbjct: 270 PPVNTSKLLRDVYAKDGRVSYPKLHLPLKTL 300
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 60.2 bits (144), Expect = 1e-09
Identities = 41/377 (10%), Positives = 102/377 (27%), Gaps = 11/377 (2%)
Query: 224 YCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFR 283
++++ + A + +L + C + A L
Sbjct: 95 LARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHH 154
Query: 284 DMKEKGILEDPSIYASLICSFASITEVKLAEELFKEAEEKGMLRDPEVCLKLVLMYIEEG 343
++K L +Y +++ +A K + ++ G+ D + +
Sbjct: 155 GQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQD 214
Query: 344 LVEKTL-DVVESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTY 402
T+ +E M LK+ + +++ + A KV +P V
Sbjct: 215 QDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNT 274
Query: 403 ASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKA 462
+ ++ K+ + ++ + + R + V K
Sbjct: 275 SKLLRDVYAKDGRVSYPKLHLPLKTLQCLFEKQLHMEL--------ASRVCVVSVEKPTL 326
Query: 463 KGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNRAREFDM 522
E K L + + K R+V + S + + M
Sbjct: 327 PSKEVKHARKTLKTLRDQWEKALCRALRETKNRLEREVYEGRFSLYPFLCLLDEREVVRM 386
Query: 523 CVKFYNEFRMNGGVIDRAIAGIMVGVFSKLSQIEELVKLLQDMKSEGTKLDERLYHSAMN 582
++ G + FS+ + + ++ +++ + L A +
Sbjct: 387 LLQVLQALPAQGESFTTLARELSARTFSRH--VVQRQRVSGQVQALQNHYRKYLCLLASD 444
Query: 583 ALRDAGLQMQAQWLQQN 599
A + W
Sbjct: 445 AEVPEPCLPRQYWEALG 461
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 57.5 bits (137), Expect = 9e-09
Identities = 18/181 (9%), Positives = 51/181 (28%), Gaps = 1/181 (0%)
Query: 210 EKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSL 269
+ A + + L + ++ + MY +
Sbjct: 116 GQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGW 175
Query: 270 GKSGRAFEALKFFRDMKEKGILEDPSIYASLI-CSFASITEVKLAEELFKEAEEKGMLRD 328
+ G E + +K+ G+ D YA+ + C + E ++ ++G+
Sbjct: 176 ARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQ 235
Query: 329 PEVCLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYE 388
L+ +++ V + + ++ + G + K++
Sbjct: 236 ALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHL 295
Query: 389 Q 389
Sbjct: 296 P 296
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 46.3 bits (108), Expect = 3e-05
Identities = 53/457 (11%), Positives = 129/457 (28%), Gaps = 37/457 (8%)
Query: 100 AYDYYNEAKKLPEFRPEKSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLV 159
+ + P + L L++ D + S +
Sbjct: 75 MAGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFF 134
Query: 160 ASCVRARKFKIANTLLQVF----ITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSA 215
C+ + +A+ LL V + L +N+ M G+ + + + V +K A
Sbjct: 135 KCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDA 194
Query: 216 GIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRA 275
G+ D Y ++ + LE S+ + +L ++
Sbjct: 195 GLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQ--EGLKLQALFTAVLLSEEDRATVL 252
Query: 276 FEALKFFRDMKEKGILEDPSIYASLICSFASITEVKLAEELFKEAEEKGMLRDPEVCLKL 335
K L P + L+ + +L + L + ++ ++L
Sbjct: 253 KAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLKTLQCLFEKQLHMEL 312
Query: 336 VLMYIEEGLVEKTLDVVESMKNAKL--------------KISDCISCAIVNGFSKRRGYW 381
+ + TL E K + + + + R +
Sbjct: 313 ASRVCVVSVEKPTLPSKEVKHARKTLKTLRDQWEKALCRALRETKNRLEREVYEGRFSLY 372
Query: 382 -------------AAVKVYEQLISQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQK 428
++V + L +QG + + R + + ++ Q
Sbjct: 373 PFLCLLDEREVVRMLLQVLQALPAQGESFTTLARELSARTFSRHVVQRQRVSGQVQALQN 432
Query: 429 GFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGR-AKNLRQ 487
+ K + +S A + R + A + W M++ A+ L Q
Sbjct: 433 HYRKYLCLLAS-DAEVPEPCLPR--QYWEALGAPEALREQPWPLPVQMELGKLLAEMLVQ 489
Query: 488 VEKLWKEMERRKVTPDKVSYTTVISAYNRAREFDMCV 524
++ +++ + V + ++ ++ +
Sbjct: 490 ATQMPCSLDKPHRSSRLVPVLYHVYSFRNVQQIGILK 526
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 61.0 bits (147), Expect = 9e-10
Identities = 73/603 (12%), Positives = 171/603 (28%), Gaps = 190/603 (31%)
Query: 62 FPTIELNRDSHHQTAVPDAKKFD-SFL----HGMLKDPQTQELAYDY-----YNEAKKLP 111
F T+ ++ Q V + + + FL + P Y YN+ +
Sbjct: 68 FWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFA 127
Query: 112 EF---RPEKSTLKLLIRYLVQSKKWDSIV--------------SLSEDFKIYNVLPDA-H 153
++ R + L + L++ + +++ + +K+ +
Sbjct: 128 KYNVSRLQP--YLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIF 185
Query: 154 TCSRLVASCVRARK-FKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKM 212
+ + +C ++ LL + ++ + + +L +
Sbjct: 186 WLN--LKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY 243
Query: 213 KSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECK----SRKLDSTPFSTHMYKILCDS 268
++ +VL + + +++ A L CK +R +K + D
Sbjct: 244 ENCLLVLLN------------VQNAKAWNAFNLSCKILLTTR-----------FKQVTDF 280
Query: 269 LGKSGRAFEALKFFRDMKEKGILEDPSIYASLICSFASITEVKLAEELFKEAEEKGMLRD 328
L + +L D + D SL + + ++L +E +
Sbjct: 281 LSAATTTHISL----DHHSMTLTPDEVK--SL---LLKYLDCR-PQDLPREVLT----TN 326
Query: 329 PEVCLKLVLMYIEEGLVE--KTLDVVESMKNAKLK--ISDCISCAIVNGFSKRRGYWA-- 382
P L I E + + T D + + KL I ++ + R+ +
Sbjct: 327 P-----RRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNV--LEPAEYRKMFDRLS 379
Query: 383 ----AVKVYEQLISQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYS 438
+ IP + I V + + +K
Sbjct: 380 VFPPSAH----------IPTIL--------LSLIWFDVIKSDVMVVV-----NKLHK--Y 414
Query: 439 SMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEMERR 498
S+V K I I + +++ + +N + +
Sbjct: 415 SLVEKQPKESTIS-------------------IPSIYLELKVKLENEYALHR-------- 447
Query: 499 KVTPDKVSYTTVISAYNRAREFDM--CVK------FYN----------------EFRM-- 532
+++ YN + FD + FY+ FRM
Sbjct: 448 ----------SIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVF 497
Query: 533 -NGGVIDRAIAGIMVGVFSKLSQIEELVKLLQDMK------SEGTKLDERLYHSAMNALR 585
+ +++ I + + ++ LQ +K + ERL ++ ++ L
Sbjct: 498 LDFRFLEQKI--RHDS--TAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLP 553
Query: 586 DAG 588
Sbjct: 554 KIE 556
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 603 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.97 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.97 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.97 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.97 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.94 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.94 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.93 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.92 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.92 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.92 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.87 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.86 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.84 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.84 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.84 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.84 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.83 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.83 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.81 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.8 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.8 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.8 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.79 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.78 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.77 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.77 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.75 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.75 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.75 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.74 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.74 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.73 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.73 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.73 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.64 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.64 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.62 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.62 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.62 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.62 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.6 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.6 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.58 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.57 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.56 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.56 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.56 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.55 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.55 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.55 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.55 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.55 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.54 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.54 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.53 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.52 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.49 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.47 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.47 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.47 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.47 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.44 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.44 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.43 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.42 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.41 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.4 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.4 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.39 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.38 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.36 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.34 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.3 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.3 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.3 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.29 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.27 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.26 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.22 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.2 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.19 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.17 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.14 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.12 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.06 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.05 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.05 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.05 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.04 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 99.02 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.98 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.98 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.98 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.97 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 98.97 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.96 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.96 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.95 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.93 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.93 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.9 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.89 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.87 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.85 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.84 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.82 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.82 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.82 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.81 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.8 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.78 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.78 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.78 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.78 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.74 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.7 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.69 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.66 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.65 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.65 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.64 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.6 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.59 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.58 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.58 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.57 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.56 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.56 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.56 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.55 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.54 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.53 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.53 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.53 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.53 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.5 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.49 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.48 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.48 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.47 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.47 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.46 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.46 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.46 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.44 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.42 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.41 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.4 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.4 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.36 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.36 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.32 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.32 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.29 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.29 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.28 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.28 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.26 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.26 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.26 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.25 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.23 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.22 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.22 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.21 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.21 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.2 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.18 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.17 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.14 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.13 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.13 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.08 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.06 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.04 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.01 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.0 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 97.98 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 97.97 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.97 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 97.93 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 97.92 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.92 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.89 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.88 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.85 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.85 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.84 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.82 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 97.79 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.71 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.7 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.68 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.67 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.65 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.63 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.61 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.61 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.6 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.58 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.45 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.4 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.38 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.25 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.25 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.07 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.87 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.77 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 96.53 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.51 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.46 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.44 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.39 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 96.34 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.29 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 96.26 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 96.25 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 96.19 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.18 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 96.18 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.13 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 95.93 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 95.87 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.85 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 95.8 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 95.76 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 95.59 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 95.44 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 95.38 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 95.07 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 94.78 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 94.76 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 94.13 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 92.99 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 92.37 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 92.01 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 91.64 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 91.54 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 91.51 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 90.25 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 89.36 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 88.8 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 88.73 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 88.12 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 87.46 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 85.28 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 84.76 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 83.63 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 83.2 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 82.72 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 82.13 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 81.4 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-41 Score=353.44 Aligned_cols=471 Identities=10% Similarity=0.010 Sum_probs=312.7
Q ss_pred CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHh
Q 007461 115 PEKSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMG 194 (603)
Q Consensus 115 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 194 (603)
++...|+.++..+.+.|++++|+.+|+++... .|+..++..++.+|.+.|++++|..+|+.+... +++..+++.++.
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~ 158 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY-NRSSACRYLAAF 158 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG-GTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc-ccchhHHHHHHH
Confidence 56777888888888888888888888888754 467788888888888888888888888877543 467778888888
Q ss_pred hhhhcCcHHHHHHHHHHHHhC---------------CCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccH
Q 007461 195 GYNKLHMYYSTILVYEKMKSA---------------GIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFST 259 (603)
Q Consensus 195 ~~~~~~~~~~a~~~~~~m~~~---------------~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 259 (603)
+|.+.|++++|+++|+++... +..++..+|+.++.+|.+.|++++|.++|+++...++.. .
T Consensus 159 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~----~ 234 (597)
T 2xpi_A 159 CLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKC----Y 234 (597)
T ss_dssp HHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----H
T ss_pred HHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchh----h
Confidence 888888888888888743221 223357788888888888888888888888887765432 3
Q ss_pred HHHHHHHHHHhccCCHHHHHHH---HHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 007461 260 HMYKILCDSLGKSGRAFEALKF---FRDMKEKGILEDPSIYASLICSFASITEVKLAEELFKEAEEKGMLRDPEVCLKLV 336 (603)
Q Consensus 260 ~~~~~li~~~~~~g~~~~A~~~---~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 336 (603)
..+..+...+...+..+.+... +..+...+..+...+|..++..|.+.|++++|.++++++.+. +++..+++.++
T Consensus 235 ~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~ 312 (597)
T 2xpi_A 235 EAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKA 312 (597)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHH
T ss_pred HHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHH
Confidence 4555555544443332222111 333433333334445555566666666677777776666554 35666667777
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChH
Q 007461 337 LMYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIALYS 416 (603)
Q Consensus 337 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~ 416 (603)
..|.+.|++++|.++|+++.+.++. +..+++.++.++.+.|++++|..+++++.+.. +.+..++..++..|.+.|+++
T Consensus 313 ~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~ 390 (597)
T 2xpi_A 313 DTLFVRSRFIDVLAITTKILEIDPY-NLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKIS 390 (597)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTT-CCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHH
Confidence 7777777777777777766655542 45566666777777777777777777666443 345566666666677777777
Q ss_pred HHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007461 417 KAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEME 496 (603)
Q Consensus 417 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 496 (603)
+|.++|+++.+.. +.+..+|+.++.+|.+.|++++|.++|+++.+.+ +.+..+|+.++.+|.+.|++++|.++|+++.
T Consensus 391 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 468 (597)
T 2xpi_A 391 EARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSY 468 (597)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 7777777666543 3456666677777777777777777777666542 3356666666677777777777777777766
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCC
Q 007461 497 RRKVTPDKVSYTTVISAYNRAREFDMCVKFYNEFRMN----GGVID--RAIAGIMVGVFSKLSQIEELVKLLQDMKSEGT 570 (603)
Q Consensus 497 ~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 570 (603)
+.. +.+..+|+.++..|.+.|++++|.++|+++.+. +..|+ ..+|..++.+|.+.|++++|.++++++.+.+
T Consensus 469 ~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~- 546 (597)
T 2xpi_A 469 ALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS- 546 (597)
T ss_dssp HHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-
T ss_pred HhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-
Confidence 542 225566667777777777777777777666554 44555 5566667777777777777777777666553
Q ss_pred CCCHHHHHHHHHHHHhcCcHHHHHHHHhhc
Q 007461 571 KLDERLYHSAMNALRDAGLQMQAQWLQQNF 600 (603)
Q Consensus 571 ~~~~~~~~~ll~a~~~~g~~~~a~~~~~~~ 600 (603)
+.+..+|..+..+|.+.|++++|.+.+++.
T Consensus 547 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 576 (597)
T 2xpi_A 547 TNDANVHTAIALVYLHKKIPGLAITHLHES 576 (597)
T ss_dssp SCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 335666666667777777777776666654
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-40 Score=347.55 Aligned_cols=490 Identities=9% Similarity=-0.003 Sum_probs=411.4
Q ss_pred CCCChhchhHHHHHHhcCCCChHHHHHHHHHHhhCCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 007461 76 AVPDAKKFDSFLHGMLKDPQTQELAYDYYNEAKKLPEFRPEKSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTC 155 (603)
Q Consensus 76 ~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 155 (603)
+.++...|+.++..+.+.++..+ |..+|+.+... .|+..++..++..|.+.|++++|+.+|+.+... +++..++
T Consensus 80 ~~~~~~~~~~~~~~~~~~g~~~~-A~~~~~~~~~~---~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~ 153 (597)
T 2xpi_A 80 SLSREDYLRLWRHDALMQQQYKC-AAFVGEKVLDI---TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACR 153 (597)
T ss_dssp --CHHHHHHHHHHHHHHTTCHHH-HHHHHHHHHHH---HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHH
T ss_pred hHHHHHHHHHHHHHHHHccCchH-HHHHHHHHHhh---CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHH
Confidence 33556669999999999999877 99999999854 578899999999999999999999999988643 6899999
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHhcC----------------CcchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCC
Q 007461 156 SRLVASCVRARKFKIANTLLQVFITDG----------------EIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVL 219 (603)
Q Consensus 156 ~~ll~~~~~~~~~~~a~~~~~~~~~~~----------------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p 219 (603)
+.++.+|.+.|++++|.++|+++.... +.+..+|+.++.+|.+.|++++|+++|++|.+.+..
T Consensus 154 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~- 232 (597)
T 2xpi_A 154 YLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAK- 232 (597)
T ss_dssp HHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-
T ss_pred HHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCch-
Confidence 999999999999999999999643332 236889999999999999999999999999986532
Q ss_pred ChhhHHHHHHHHHHcCCHHHHH--HH-HHHHHhCCCCCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHH
Q 007461 220 DSGCYCQIMEAYYKIGDSEKVA--AL-FLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEKGILEDPSI 296 (603)
Q Consensus 220 ~~~~~~~ll~~~~~~g~~~~a~--~~-~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 296 (603)
+...+..+...+...++.+.+. .+ +..+...+.. ....+|+.++..|.+.|++++|.++|+++.+. .++..+
T Consensus 233 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~ 307 (597)
T 2xpi_A 233 CYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAA---FLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDL 307 (597)
T ss_dssp CHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHH---HHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHH
T ss_pred hhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHH---HHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHH
Confidence 4555665655444333222221 11 3344333221 12356777889999999999999999999875 578999
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh
Q 007461 297 YASLICSFASITEVKLAEELFKEAEEKGMLRDPEVCLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSK 376 (603)
Q Consensus 297 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 376 (603)
+..++..+.+.|++++|.++++++.+.+. .+..++..++.+|.+.|++++|.++++.+.+..+ .+..+|+.++..|.+
T Consensus 308 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~ 385 (597)
T 2xpi_A 308 LLCKADTLFVRSRFIDVLAITTKILEIDP-YNLDVYPLHLASLHESGEKNKLYLISNDLVDRHP-EKAVTWLAVGIYYLC 385 (597)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHcCc-ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHH
Confidence 99999999999999999999999998763 3778899999999999999999999999987654 477889999999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCCHHHHHHH
Q 007461 377 RRGYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWL 456 (603)
Q Consensus 377 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 456 (603)
.|++++|+++|+++.+.. +.+..+|+.++..|.+.|++++|.++|+++.+.+ +.+..+|+.++.+|.+.|++++|.++
T Consensus 386 ~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~ 463 (597)
T 2xpi_A 386 VNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEY 463 (597)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999999998754 3467899999999999999999999999999875 56889999999999999999999999
Q ss_pred HHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007461 457 VAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEMERR----KVTPD--KVSYTTVISAYNRAREFDMCVKFYNEF 530 (603)
Q Consensus 457 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~~ 530 (603)
|+++.+.. +.+..+|+.++..|.+.|++++|.++|+++.+. +..|+ ..+|..++.+|.+.|++++|.++++++
T Consensus 464 ~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 542 (597)
T 2xpi_A 464 LQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQG 542 (597)
T ss_dssp HHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 99998863 457899999999999999999999999999775 66787 678999999999999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 007461 531 RMNGGVIDRAIAGIMVGVFSKLSQIEELVKLLQDMKSEGTKLDERLYHSAMNAL 584 (603)
Q Consensus 531 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~a~ 584 (603)
.+.+. .+..+|..++.+|.+.|++++|.+.++++.+.. +.+...+..+..+|
T Consensus 543 ~~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~ 594 (597)
T 2xpi_A 543 LLLST-NDANVHTAIALVYLHKKIPGLAITHLHESLAIS-PNEIMASDLLKRAL 594 (597)
T ss_dssp HHHSS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTT
T ss_pred HHhCC-CChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCChHHHHHHHHHH
Confidence 98753 378899999999999999999999999999763 23455555555444
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.97 E-value=8.9e-31 Score=264.82 Aligned_cols=204 Identities=14% Similarity=0.160 Sum_probs=123.4
Q ss_pred HHHHHHHHHhCCCCCCH-hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC---------hHH
Q 007461 348 TLDVVESMKNAKLKISD-CISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIAL---------YSK 417 (603)
Q Consensus 348 a~~~~~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~---------~~~ 417 (603)
+..+.+.+.+++..... .+++.+|.+|++.|++++|+++|++|.+.|+.||..||+.+|.+|++.+. +++
T Consensus 9 ~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~ 88 (501)
T 4g26_A 9 SENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSR 88 (501)
T ss_dssp ---------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHH
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHH
Confidence 44455555555554332 34666667777777777777777777777777777777777777665543 455
Q ss_pred HHHHHHHHHHcCCCcCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 007461 418 AEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEMER 497 (603)
Q Consensus 418 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 497 (603)
|.++|++|.+.|+.||..+|++||.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+
T Consensus 89 A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~ 168 (501)
T 4g26_A 89 GFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVE 168 (501)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 66666666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 007461 498 RKVTPDKVSYTTVISAYNRAREFDMCVKFYNEFRMNGGVIDRAIAGIMVGVFSK 551 (603)
Q Consensus 498 ~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 551 (603)
.|+.||..||++||.+|++.|++++|.+++++|++.+..|+..||+.++..|..
T Consensus 169 ~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 169 SEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp TTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred cCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 666666666666666666666666666666666666666666666666666654
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-30 Score=263.98 Aligned_cols=207 Identities=14% Similarity=0.175 Sum_probs=181.8
Q ss_pred HHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCC---------H
Q 007461 311 KLAEELFKEAEEKGMLRDP-EVCLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRRG---------Y 380 (603)
Q Consensus 311 ~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~---------~ 380 (603)
..++.+.+.+.+.+....+ .+++.+|++|++.|++++|.++|++|.+.|+.||..+|++||.+|++.+. .
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l 86 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGL 86 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHH
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchH
Confidence 4456666777777766554 46888999999999999999999999999999999999999999987654 7
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCCHHHHHHHHHHH
Q 007461 381 WAAVKVYEQLISQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKM 460 (603)
Q Consensus 381 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 460 (603)
++|.++|++|...|+.||..||+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|
T Consensus 87 ~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M 166 (501)
T 4g26_A 87 SRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHM 166 (501)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 007461 461 KAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNRA 517 (603)
Q Consensus 461 ~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 517 (603)
.+.|+.||..+|++||.+|++.|+.++|.+++++|.+.|..|+..||+.++..|...
T Consensus 167 ~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 167 VESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999999998864
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=3.9e-27 Score=234.51 Aligned_cols=381 Identities=12% Similarity=0.085 Sum_probs=214.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHH
Q 007461 124 IRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYY 203 (603)
Q Consensus 124 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 203 (603)
...+.+.|++++|++.++.+.+.. +.+...+..+...+...|++++|...++......|.+..+|..+...|.+.|+++
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~ 84 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQ 84 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHH
Confidence 455666777777777777776654 4445566666666777777777777777777776667777777777777777777
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccCCHHHHHHHHH
Q 007461 204 STILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFR 283 (603)
Q Consensus 204 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 283 (603)
+|+..|+++.+... .+..+|..+..++.+.|++++|.+.|+++...++.. ...+..+...+...|++++|.+.|+
T Consensus 85 ~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~ 159 (388)
T 1w3b_A 85 EAIEHYRHALRLKP-DFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDL----YCVRSDLGNLLKALGRLEEAKACYL 159 (388)
T ss_dssp HHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTC----THHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCc-chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc----HHHHHHHHHHHHHccCHHHHHHHHH
Confidence 77777777766431 134456677777777777777777777766654332 2456666666777777777777777
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC
Q 007461 284 DMKEKGILEDPSIYASLICSFASITEVKLAEELFKEAEEKGMLRDPEVCLKLVLMYIEEGLVEKTLDVVESMKNAKLKIS 363 (603)
Q Consensus 284 ~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 363 (603)
++.+.. +.+..+|..+...+...|++++|...++++.+.+. .+...+..+...+...|++++|...|++..+.++ .+
T Consensus 160 ~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~ 236 (388)
T 1w3b_A 160 KAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP-NFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP-NH 236 (388)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCT-TC
T ss_pred HHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-CC
Confidence 666542 11345566666666666666666666666665432 2445555555555555555555555555544433 12
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHH
Q 007461 364 DCISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAM 443 (603)
Q Consensus 364 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 443 (603)
..++..+...+.+.|++++|+..|+++. +.+ +.+..+|..+...
T Consensus 237 ~~~~~~l~~~~~~~g~~~~A~~~~~~al-----------------------------------~~~-p~~~~~~~~l~~~ 280 (388)
T 1w3b_A 237 AVVHGNLACVYYEQGLIDLAIDTYRRAI-----------------------------------ELQ-PHFPDAYCNLANA 280 (388)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH-----------------------------------HTC-SSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH-----------------------------------hhC-CCCHHHHHHHHHH
Confidence 3344444444444444444444444444 432 2233444444445
Q ss_pred HHccCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 007461 444 YGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNRAREFDMC 523 (603)
Q Consensus 444 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a 523 (603)
+.+.|++++|.+.++++.+. .+.+..+|..+...+...|++++|...++++.+.. +.+..++..+..+|.+.|++++|
T Consensus 281 ~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 358 (388)
T 1w3b_A 281 LKEKGSVAEAEDCYNTALRL-CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEA 358 (388)
T ss_dssp HHHHSCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHH
T ss_pred HHHcCCHHHHHHHHHHHHhh-CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHH
Confidence 55555555555555554443 13344445555555555555555555555554321 12234455555555555555555
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 007461 524 VKFYNEFRMNGGVIDRAIAGIMVGVFSKL 552 (603)
Q Consensus 524 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 552 (603)
.+.++++.+.... +...|..+...+...
T Consensus 359 ~~~~~~a~~~~p~-~~~a~~~lg~~~~~~ 386 (388)
T 1w3b_A 359 LMHYKEAIRISPT-FADAYSNMGNTLKEM 386 (388)
T ss_dssp HHHHHHHHTTCTT-CHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhCCC-CHHHHHhHHHHHHHc
Confidence 5555555443211 334444444444433
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=8.7e-27 Score=231.99 Aligned_cols=380 Identities=12% Similarity=0.043 Sum_probs=265.6
Q ss_pred HHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCHHHH
Q 007461 161 SCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKV 240 (603)
Q Consensus 161 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a 240 (603)
.+.+.|++++|.+.++.+....|.+...+..+...+...|++++|...++...+.. +.+..+|..+...|.+.|++++|
T Consensus 8 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~~A 86 (388)
T 1w3b_A 8 REYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEA 86 (388)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHH
Confidence 34455666666666666655555555555555555555666666665555555432 22445555555555555555555
Q ss_pred HHHHHHHHhCCCCCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 007461 241 AALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEKGILEDPSIYASLICSFASITEVKLAEELFKEA 320 (603)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 320 (603)
.+.|+++...++. +..+|..+..++.+.|++++|++.|+++.+. .|+
T Consensus 87 ~~~~~~al~~~p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~--------------------------- 133 (388)
T 1w3b_A 87 IEHYRHALRLKPD----FIDGYINLAAALVAAGDMEGAVQAYVSALQY--NPD--------------------------- 133 (388)
T ss_dssp HHHHHHHHHHCTT----CHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--CTT---------------------------
T ss_pred HHHHHHHHHcCcc----hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCC---------------------------
Confidence 5555555443322 1234555555555555555555555555443 222
Q ss_pred HHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 007461 321 EEKGMLRDPEVCLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQV 400 (603)
Q Consensus 321 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ 400 (603)
+...+..+...+...|++++|.+.|+++.+.++ .+..+|..+...+...|++++|+..|+++.+.+ +.+..
T Consensus 134 -------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~ 204 (388)
T 1w3b_A 134 -------LYCVRSDLGNLLKALGRLEEAKACYLKAIETQP-NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLD 204 (388)
T ss_dssp -------CTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHH
T ss_pred -------cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHH
Confidence 233444455555555555555555555555443 234556666667777777777777777776654 33566
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHH
Q 007461 401 TYASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHG 480 (603)
Q Consensus 401 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 480 (603)
.+..+...+...|++++|...+++..+.. +.+..++..+...|.+.|++++|.+.|+++.+.. +.+..+|..+...+.
T Consensus 205 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 282 (388)
T 1w3b_A 205 AYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALK 282 (388)
T ss_dssp HHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHH
Confidence 78888888999999999999999988875 5568899999999999999999999999999862 335788999999999
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 007461 481 RAKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNRAREFDMCVKFYNEFRMNGGVIDRAIAGIMVGVFSKLSQIEELVK 560 (603)
Q Consensus 481 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 560 (603)
+.|++++|...++++.+.. +.+..++..+...+...|++++|.+.++++.+... .+...+..+..+|.+.|++++|.+
T Consensus 283 ~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~ 360 (388)
T 1w3b_A 283 EKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFP-EFAAAHSNLASVLQQQGKLQEALM 360 (388)
T ss_dssp HHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCT-TCHHHHHHHHHHHHTTTCCHHHHH
T ss_pred HcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999999998753 45778899999999999999999999999987642 357789999999999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 007461 561 LLQDMKSEGTKLDERLYHSAMNALRDAG 588 (603)
Q Consensus 561 ~~~~m~~~g~~~~~~~~~~ll~a~~~~g 588 (603)
.++++.+.. +.+...|..+...+...|
T Consensus 361 ~~~~a~~~~-p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 361 HYKEAIRIS-PTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HHHHHHTTC-TTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHhhC-CCCHHHHHhHHHHHHHcc
Confidence 999999752 234677777777777655
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=9.2e-24 Score=218.53 Aligned_cols=445 Identities=9% Similarity=-0.016 Sum_probs=307.7
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhh
Q 007461 117 KSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGY 196 (603)
Q Consensus 117 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 196 (603)
...+..+...+.+.|++++|+..|+++.+.+ |+..+|..+..++.+.|++++|...++++.+..|.+..+|..+..+|
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 83 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASAN 83 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHH
Confidence 4466777888888999999999999988876 68888888999999999999999999999888888888999999999
Q ss_pred hhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccCCHH
Q 007461 197 NKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAF 276 (603)
Q Consensus 197 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 276 (603)
.+.|++++|+..|+++.+.+. ++......++..+.+......+.+.+..+......+... .++.-...........
T Consensus 84 ~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 159 (514)
T 2gw1_A 84 EGLGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTEL---STQPAKERKDKQENLP 159 (514)
T ss_dssp HHTTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC------------------------------CCC
T ss_pred HHHhhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc---cCChhhHHHhhccCCc
Confidence 999999999999999888753 344455555555554444444433332222111111000 0000000000001111
Q ss_pred HHHHHHHHHHHCCCC--------C-CHHHHHHHHHHHHc---cCCHHHHHHHHHHHHH-----cCC--------CCCHHH
Q 007461 277 EALKFFRDMKEKGIL--------E-DPSIYASLICSFAS---ITEVKLAEELFKEAEE-----KGM--------LRDPEV 331 (603)
Q Consensus 277 ~A~~~~~~m~~~g~~--------p-~~~~~~~ll~~~~~---~g~~~~a~~~~~~~~~-----~~~--------~~~~~~ 331 (603)
....+...+...... | +...+......+.. .|++++|...++++.+ ... +.+..+
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (514)
T 2gw1_A 160 SVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAIS 239 (514)
T ss_dssp CHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHH
T ss_pred hhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHH
Confidence 111111111111000 2 13334334343443 7888888888888777 311 123456
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 007461 332 CLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINAYCR 411 (603)
Q Consensus 332 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 411 (603)
+..+...+...|++++|...|+.+.+.++. ...+..+...+...|++++|+..++++.... +.+...+..+...+..
T Consensus 240 ~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 316 (514)
T 2gw1_A 240 LEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFI 316 (514)
T ss_dssp HHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHH
Confidence 777888888888888888888888877654 6778888888888888888888888887754 3456677888888888
Q ss_pred cCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHH
Q 007461 412 IALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKL 491 (603)
Q Consensus 412 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~ 491 (603)
.|++++|...+++..+.. +.+...+..+...|.+.|++++|...++++.+.. +.+...+..+...+...|++++|...
T Consensus 317 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~ 394 (514)
T 2gw1_A 317 LQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQ 394 (514)
T ss_dssp TTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 899999999998888765 4467788888888888999999999998887752 33567788888888889999999998
Q ss_pred HHHHHhCCCC-CC----HHHHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 007461 492 WKEMERRKVT-PD----KVSYTTVISAYNR---AREFDMCVKFYNEFRMNGGVIDRAIAGIMVGVFSKLSQIEELVKLLQ 563 (603)
Q Consensus 492 ~~~m~~~~~~-p~----~~~~~~li~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 563 (603)
++++.+.... ++ ...+..+...+.. .|++++|...++++.+.... +...+..+..+|.+.|++++|.+.++
T Consensus 395 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~ 473 (514)
T 2gw1_A 395 YDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPR-SEQAKIGLAQMKLQQEDIDEAITLFE 473 (514)
T ss_dssp HHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 8888653211 11 2378888888888 89999999999988876433 56778888888999999999999999
Q ss_pred HHHhCCCCCCHH
Q 007461 564 DMKSEGTKLDER 575 (603)
Q Consensus 564 ~m~~~g~~~~~~ 575 (603)
++.+. .|+..
T Consensus 474 ~a~~~--~~~~~ 483 (514)
T 2gw1_A 474 ESADL--ARTME 483 (514)
T ss_dssp HHHHH--CSSHH
T ss_pred HHHHh--ccccH
Confidence 88875 35443
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.6e-23 Score=215.18 Aligned_cols=442 Identities=11% Similarity=-0.015 Sum_probs=330.2
Q ss_pred hhHHHHHHhcCCCChHHHHHHHHHHhhCCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 007461 83 FDSFLHGMLKDPQTQELAYDYYNEAKKLPEFRPEKSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASC 162 (603)
Q Consensus 83 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 162 (603)
+......+...++..+ |...|+.+.+. .|+...|..+..++.+.|++++|+..++.+.+.+ +.+..++..+..++
T Consensus 9 ~~~~g~~~~~~g~~~~-A~~~~~~al~~---~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 83 (514)
T 2gw1_A 9 LKDKGNQFFRNKKYDD-AIKYYNWALEL---KEDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASAN 83 (514)
T ss_dssp HHHHHHHHHHTSCHHH-HHHHHHHHHHH---CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHH-HHHHHHHHHhc---CccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHH
Confidence 4555666778888877 99999999986 3799999999999999999999999999999886 66788999999999
Q ss_pred HccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHc---CCHHH
Q 007461 163 VRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKI---GDSEK 239 (603)
Q Consensus 163 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~---g~~~~ 239 (603)
...|++++|...|+.+...++.+......++..+........+.+.+..+...+..|+...+..-....... .....
T Consensus 84 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (514)
T 2gw1_A 84 EGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTS 163 (514)
T ss_dssp HHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHH
T ss_pred HHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHH
Confidence 999999999999999999888777776667666666555555555444433332222222111111111111 11111
Q ss_pred HHHHHHHHHhCC---CCCCCccHHHHHHHHHHHhc---cCCHHHHHHHHHHHHH-----CCCCC--------CHHHHHHH
Q 007461 240 VAALFLECKSRK---LDSTPFSTHMYKILCDSLGK---SGRAFEALKFFRDMKE-----KGILE--------DPSIYASL 300 (603)
Q Consensus 240 a~~~~~~~~~~~---~~~~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~-----~g~~p--------~~~~~~~l 300 (603)
+...+....... ....+.+...+......+.. .|++++|+..|+++.+ ....| +...+..+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (514)
T 2gw1_A 164 MASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHT 243 (514)
T ss_dssp HHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHH
Confidence 111111111000 00012234455555555554 8999999999999987 31122 34577788
Q ss_pred HHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCH
Q 007461 301 ICSFASITEVKLAEELFKEAEEKGMLRDPEVCLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRRGY 380 (603)
Q Consensus 301 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 380 (603)
...+...|++++|...++.+.+.... ...+..+...|...|++++|.+.++.+.+..+. +..++..+...+...|++
T Consensus 244 ~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~ 320 (514)
T 2gw1_A 244 GIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSN-NSSVYYHRGQMNFILQNY 320 (514)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTT-CTHHHHHHHHHHHHTTCT
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcC-CHHHHHHHHHHHHHhCCH
Confidence 88899999999999999999987644 888899999999999999999999999887663 566889999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCCHHHHHHHHHHH
Q 007461 381 WAAVKVYEQLISQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKM 460 (603)
Q Consensus 381 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 460 (603)
++|+..+++..+.. +.+...+..+...+...|++++|...++.+.+.. +.+...+..+...|.+.|++++|...++++
T Consensus 321 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 398 (514)
T 2gw1_A 321 DQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLA 398 (514)
T ss_dssp THHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 99999999998865 3356788888999999999999999999998874 556788999999999999999999999998
Q ss_pred HHcCC-CCC----HhHHHHHHHHHHh---cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007461 461 KAKGC-EPN----VWIYNSLMDMHGR---AKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNRAREFDMCVKFYNEFRM 532 (603)
Q Consensus 461 ~~~~~-~p~----~~~~~~li~~~~~---~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 532 (603)
.+..- .++ ...|..+...+.. .|++++|...++++.+.. +.+..++..+...|...|++++|.+.++++.+
T Consensus 399 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 477 (514)
T 2gw1_A 399 IELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEESAD 477 (514)
T ss_dssp HHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 76411 111 3388899999999 999999999999998653 33567889999999999999999999999998
Q ss_pred CCC
Q 007461 533 NGG 535 (603)
Q Consensus 533 ~~~ 535 (603)
...
T Consensus 478 ~~~ 480 (514)
T 2gw1_A 478 LAR 480 (514)
T ss_dssp HCS
T ss_pred hcc
Confidence 643
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.93 E-value=6.3e-22 Score=201.07 Aligned_cols=327 Identities=14% Similarity=-0.004 Sum_probs=170.1
Q ss_pred HHHHHHHHhhCCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHH
Q 007461 100 AYDYYNEAKKLPEFRPEKSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFI 179 (603)
Q Consensus 100 a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 179 (603)
+...+..+.... +.+...+..++..+.+.|++++|+.+|+.+.+.. +.+..++..+...+...|++++|...|+++.
T Consensus 11 ~~~~~~~~~~~~--p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 87 (450)
T 2y4t_A 11 VDLGTENLYFQS--MADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVI 87 (450)
T ss_dssp --------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cccccccccccc--HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 444444444332 4455667777777777777777777777776654 4556677777777777777777777777777
Q ss_pred hcCCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCCh---hhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCC
Q 007461 180 TDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDS---GCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTP 256 (603)
Q Consensus 180 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 256 (603)
+.++.+..++..+...|.+.|++++|.+.|+++.+.+.. +. ..+..+...+..
T Consensus 88 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~----------------------- 143 (450)
T 2y4t_A 88 QLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPS-ENEEKEAQSQLIKSDEM----------------------- 143 (450)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHH-----------------------
T ss_pred hcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHHHHH-----------------------
Confidence 766666667777777777777777777777776664321 22 344444443111
Q ss_pred ccHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 007461 257 FSTHMYKILCDSLGKSGRAFEALKFFRDMKEKGILEDPSIYASLICSFASITEVKLAEELFKEAEEKGMLRDPEVCLKLV 336 (603)
Q Consensus 257 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 336 (603)
..+..+...+...|++++|++.|+++.+.. +.+...+..+..++...|++++|.+.++.+.+.. +.+..++..+.
T Consensus 144 ---~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 218 (450)
T 2y4t_A 144 ---QRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKIS 218 (450)
T ss_dssp ---HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHH
T ss_pred ---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 012233344555566666666666655432 2244455555555555556555555555555442 22455555556
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHH------------HHHHHhcCCHHHHHHHHHHHHHcCCCCC-----H
Q 007461 337 LMYIEEGLVEKTLDVVESMKNAKLKISDCISCAI------------VNGFSKRRGYWAAVKVYEQLISQGCIPG-----Q 399 (603)
Q Consensus 337 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l------------i~~~~~~~~~~~a~~~~~~m~~~g~~p~-----~ 399 (603)
..|...|++++|.+.|+++.+..+. +...+..+ ...+.+.|++++|+..|+++.+.. |+ .
T Consensus 219 ~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~ 295 (450)
T 2y4t_A 219 TLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSIAEYTV 295 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CSSHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcchHHHH
Confidence 6666666666666666655544331 22222222 344444444555555444444422 22 1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 007461 400 VTYASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKA 462 (603)
Q Consensus 400 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 462 (603)
..+..+...+.+.|++++|...++++.+.. +.+...|..+..+|.+.|++++|...+++..+
T Consensus 296 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 357 (450)
T 2y4t_A 296 RSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQE 357 (450)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 234444444444444444444444444432 22344444444444444444444444444444
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.92 E-value=6.7e-22 Score=200.87 Aligned_cols=329 Identities=12% Similarity=0.046 Sum_probs=219.4
Q ss_pred CCCh-hchhHHHHHHhcCCCChHHHHHHHHHHhhCCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 007461 77 VPDA-KKFDSFLHGMLKDPQTQELAYDYYNEAKKLPEFRPEKSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTC 155 (603)
Q Consensus 77 ~p~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 155 (603)
.|+. ..+..+...+...++..+ |..+|+.+.+.. +.+...|..+...+...|++++|+..++.+.+.+ +.+..++
T Consensus 22 ~p~~~~~~~~~~~~~~~~g~~~~-A~~~~~~~l~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~ 97 (450)
T 2y4t_A 22 SMADVEKHLELGKKLLAAGQLAD-ALSQFHAAVDGD--PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAAR 97 (450)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHH-HHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred cHHHHHHHHHHHHHHHHCCCHHH-HHHHHHHHHHhC--CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHH
Confidence 4443 337777888888888877 999999998753 5678899999999999999999999999999886 5678899
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHhcCCcch---hhHHHHHhh------------hhhcCcHHHHHHHHHHHHhCCCCCC
Q 007461 156 SRLVASCVRARKFKIANTLLQVFITDGEIAL---LAFNSAMGG------------YNKLHMYYSTILVYEKMKSAGIVLD 220 (603)
Q Consensus 156 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~l~~~------------~~~~~~~~~a~~~~~~m~~~~~~p~ 220 (603)
..+...|.+.|++++|...|+++....+.+. .++..++.. +...|++++|+..|+++.+... .+
T Consensus 98 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~ 176 (450)
T 2y4t_A 98 LQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCV-WD 176 (450)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CC
Confidence 9999999999999999999999999888777 888887655 5555555555555555554322 24
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHH-HHHH
Q 007461 221 SGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEKGILEDPS-IYAS 299 (603)
Q Consensus 221 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ 299 (603)
..++..+..+|.+.|++++|.+.|+++...++. +..+|..++..|...|++++|++.|+++... .|+.. .+..
T Consensus 177 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~ 250 (450)
T 2y4t_A 177 AELRELRAECFIKEGEPRKAISDLKAASKLKND----NTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAH 250 (450)
T ss_dssp HHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCS----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCChHHHHHH
Confidence 445555555555555555555555555443221 2344555555555555555555555555443 22221 1111
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC---HhhHHHHHHHHHh
Q 007461 300 LICSFASITEVKLAEELFKEAEEKGMLRDPEVCLKLVLMYIEEGLVEKTLDVVESMKNAKLKIS---DCISCAIVNGFSK 376 (603)
Q Consensus 300 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~ 376 (603)
+ .... .......+...+.+.|++++|.+.|+.+.+..+... ...|..+...+.+
T Consensus 251 ~-~~~~----------------------~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~ 307 (450)
T 2y4t_A 251 Y-KQVK----------------------KLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSK 307 (450)
T ss_dssp H-HHHH----------------------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHT
T ss_pred H-HHHH----------------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHH
Confidence 1 0000 000112236677777888888888877776543211 2356777777888
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHH
Q 007461 377 RRGYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMV 441 (603)
Q Consensus 377 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 441 (603)
.|++++|+..++++.+.. +.+...+..+..+|...|++++|...|+++.+.. +.+...+..+.
T Consensus 308 ~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 370 (450)
T 2y4t_A 308 DEKPVEAIRVCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHN-ENDQQIREGLE 370 (450)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence 888888888888877653 3456777888888888888888888888887753 33444554444
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.92 E-value=3.3e-21 Score=200.54 Aligned_cols=401 Identities=8% Similarity=0.003 Sum_probs=175.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhh
Q 007461 119 TLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNK 198 (603)
Q Consensus 119 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 198 (603)
.|..+...+.+.|++++|+..|+++.+.. +.+..++..+..++.+.|++++|...++++...+|.+..++..+...+..
T Consensus 27 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 105 (537)
T 3fp2_A 27 QLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANES 105 (537)
T ss_dssp HHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence 34444555555555555555555555443 33445555555555555555555555555555555555555555555555
Q ss_pred cCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCC--------------------------
Q 007461 199 LHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKL-------------------------- 252 (603)
Q Consensus 199 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-------------------------- 252 (603)
.|++++|+..|+.+ .. .|+ .....+..+...+....|...++.+....+
T Consensus 106 ~g~~~~A~~~~~~~-~~--~~~--~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (537)
T 3fp2_A 106 LGNFTDAMFDLSVL-SL--NGD--FDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEV 180 (537)
T ss_dssp HTCHHHHHHHHHHH-C---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHH
T ss_pred cCCHHHHHHHHHHH-hc--CCC--CChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHH
Confidence 55555555555322 11 111 111112233333344445555544433211
Q ss_pred -------CCCCccHHHHHHHHHHHhcc--------CCHHHHHHHHHHHHHCCCCCC--------HHHHHHHHHHHHccCC
Q 007461 253 -------DSTPFSTHMYKILCDSLGKS--------GRAFEALKFFRDMKEKGILED--------PSIYASLICSFASITE 309 (603)
Q Consensus 253 -------~~~~~~~~~~~~li~~~~~~--------g~~~~A~~~~~~m~~~g~~p~--------~~~~~~ll~~~~~~g~ 309 (603)
...+.....+..+...+... |++++|+.+|+++.+. .|+ ..++..+...+...|+
T Consensus 181 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~ 258 (537)
T 3fp2_A 181 SSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSA--NTVDDPLRENAALALCYTGIFHFLKNN 258 (537)
T ss_dssp HTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH--CCCcchhhHHHHHHHHHHHHHHHhccc
Confidence 11110111122222222211 2455555555555443 222 1123333344444555
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 007461 310 VKLAEELFKEAEEKGMLRDPEVCLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQ 389 (603)
Q Consensus 310 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 389 (603)
+++|...++.+.+.. |+...+..+...|...|++++|.+.++.+.+..+ .+..+|..+...+...|++++|+..+++
T Consensus 259 ~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 335 (537)
T 3fp2_A 259 LLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNP-EYPPTYYHRGQMYFILQDYKNAKEDFQK 335 (537)
T ss_dssp HHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 555555555555442 2344455555555555555555555555544433 1334455555555555555555555555
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcC-----
Q 007461 390 LISQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKG----- 464 (603)
Q Consensus 390 m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~----- 464 (603)
..+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+.+.|++++|...++++.+..
T Consensus 336 a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 413 (537)
T 3fp2_A 336 AQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEK 413 (537)
T ss_dssp HHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSS
T ss_pred HHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchh
Confidence 54432 1223444445555555555555555555554442 3334445555555555555555555555544321
Q ss_pred CCCCHhHHHHHHHHHHhc----------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 007461 465 CEPNVWIYNSLMDMHGRA----------KNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNRAREFDMCVKFYNEFRMN 533 (603)
Q Consensus 465 ~~p~~~~~~~li~~~~~~----------g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 533 (603)
.......+..+...+... |++++|...++++.+.. +.+...+..+...|...|++++|.+.|+++.+.
T Consensus 414 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 414 IHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAIL 491 (537)
T ss_dssp CSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 000111122223334444 55555555555554331 113344445555555555555555555555443
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.92 E-value=1.2e-21 Score=203.76 Aligned_cols=402 Identities=11% Similarity=0.037 Sum_probs=308.5
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 007461 152 AHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAY 231 (603)
Q Consensus 152 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 231 (603)
...+..+...+.+.|++++|+..|+++....|.+..+|..+..+|.+.|++++|++.|+++.+.+.. +..++..+..++
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~ 103 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPD-HSKALLRRASAN 103 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHHH
Confidence 4567778888999999999999999999999999999999999999999999999999999987533 778899999999
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHC------CCCCCHHHH--------
Q 007461 232 YKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEK------GILEDPSIY-------- 297 (603)
Q Consensus 232 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~~~~~-------- 297 (603)
...|++++|...|+.+ ...+.. .+..+..+...+...+|...++++... ...|+....
T Consensus 104 ~~~g~~~~A~~~~~~~-~~~~~~-------~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (537)
T 3fp2_A 104 ESLGNFTDAMFDLSVL-SLNGDF-------DGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFD 175 (537)
T ss_dssp HHHTCHHHHHHHHHHH-C------------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSC
T ss_pred HHcCCHHHHHHHHHHH-hcCCCC-------ChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcC
Confidence 9999999999999743 333222 223344555566677888888888543 112222221
Q ss_pred ----------------------HHHHHHHHc--------cCCHHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHH
Q 007461 298 ----------------------ASLICSFAS--------ITEVKLAEELFKEAEEKGMLRDP-------EVCLKLVLMYI 340 (603)
Q Consensus 298 ----------------------~~ll~~~~~--------~g~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~ 340 (603)
..+...+.. .|++++|..+++.+.+.... +. .++..+...+.
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~g~~~~ 254 (537)
T 3fp2_A 176 SHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTV-DDPLRENAALALCYTGIFHF 254 (537)
T ss_dssp HHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CC-CHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCC-cchhhHHHHHHHHHHHHHHH
Confidence 112112111 24788888888888876422 32 34666777888
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 007461 341 EEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIALYSKAEK 420 (603)
Q Consensus 341 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~ 420 (603)
..|++++|.+.|+...+.++. ..++..+...+...|++++|+..++++.+.. +.+..++..+...+...|++++|..
T Consensus 255 ~~~~~~~A~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~ 331 (537)
T 3fp2_A 255 LKNNLLDAQVLLQESINLHPT--PNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKE 331 (537)
T ss_dssp HTTCHHHHHHHHHHHHHHCCC--HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hcccHHHHHHHHHHHHhcCCC--chHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHH
Confidence 899999999999999887654 6778888899999999999999999988765 3467788888999999999999999
Q ss_pred HHHHHHHcCCCcCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 007461 421 VFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEMERRKV 500 (603)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 500 (603)
.+++..+.. +.+...+..+...|.+.|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+...
T Consensus 332 ~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 409 (537)
T 3fp2_A 332 DFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEE 409 (537)
T ss_dssp HHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC
Confidence 999998875 4567788899999999999999999999998762 44567888899999999999999999999865421
Q ss_pred -----CCCHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 007461 501 -----TPDKVSYTTVISAYNRA----------REFDMCVKFYNEFRMNGGVIDRAIAGIMVGVFSKLSQIEELVKLLQDM 565 (603)
Q Consensus 501 -----~p~~~~~~~li~~~~~~----------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 565 (603)
......+......+... |++++|...++++.+.... +...+..+..+|.+.|++++|.+.+++.
T Consensus 410 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a 488 (537)
T 3fp2_A 410 VQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPR-SEQAKIGLAQLKLQMEKIDEAIELFEDS 488 (537)
T ss_dssp HCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 11122244555667777 9999999999999886443 6678888999999999999999999999
Q ss_pred HhCC
Q 007461 566 KSEG 569 (603)
Q Consensus 566 ~~~g 569 (603)
.+..
T Consensus 489 l~~~ 492 (537)
T 3fp2_A 489 AILA 492 (537)
T ss_dssp HHHC
T ss_pred HHhC
Confidence 8763
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.87 E-value=2.3e-18 Score=168.89 Aligned_cols=332 Identities=10% Similarity=-0.023 Sum_probs=194.1
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhh
Q 007461 116 EKSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGG 195 (603)
Q Consensus 116 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 195 (603)
++..+..+...+...|++++|+..|+.+.+.. +.+..++..+...+...|++++|...++++....+.+..+|..+...
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 80 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHH
Confidence 34566777777788888888888888877765 45677777777778888888888888888777777777778888888
Q ss_pred hhhcCcHHHHHHHHHHHHhCCCC--CChhhHHHH------------HHHHHHcCCHHHHHHHHHHHHhCCCCCCCccHHH
Q 007461 196 YNKLHMYYSTILVYEKMKSAGIV--LDSGCYCQI------------MEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHM 261 (603)
Q Consensus 196 ~~~~~~~~~a~~~~~~m~~~~~~--p~~~~~~~l------------l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 261 (603)
+...|++++|...|++..+.... .+...+..+ ...+...|++++|.+.++++....+. +..+
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~ 156 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVW----DAEL 156 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----CHHH
T ss_pred HHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC----chHH
Confidence 88888888888888877765320 123333333 24444455555555555554443322 1234
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 007461 262 YKILCDSLGKSGRAFEALKFFRDMKEKGILEDPSIYASLICSFASITEVKLAEELFKEAEEKGMLRDPEVCLKLVLMYIE 341 (603)
Q Consensus 262 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 341 (603)
+..+...+...|++++|++.+++..+.. +.+...+..+...+...|++++|...++.+.+.... +...+..+..
T Consensus 157 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~---- 230 (359)
T 3ieg_A 157 RELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQ---- 230 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH----
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-chHHHHHHHH----
Confidence 4444555555555555555555444431 113344444444444444444444444444433211 1111111000
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCChHH
Q 007461 342 EGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQ----VTYASIINAYCRIALYSK 417 (603)
Q Consensus 342 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~----~~~~~ll~~~~~~g~~~~ 417 (603)
+. .......+...+.+.|++++|+..++++.+.... +. ..+..+...+...|++++
T Consensus 231 -------------~~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~ 290 (359)
T 3ieg_A 231 -------------VK------KLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVE 290 (359)
T ss_dssp -------------HH------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred -------------HH------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHH
Confidence 00 0000112355566777777777777776664311 22 224445667777788888
Q ss_pred HHHHHHHHHHcCCCcCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHHh
Q 007461 418 AEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEP-NVWIYNSLMDMHGR 481 (603)
Q Consensus 418 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~ 481 (603)
|...++...+.. +.+...+..+...|.+.|++++|.+.|++..+. .| +...+..+..+...
T Consensus 291 A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~~~ 352 (359)
T 3ieg_A 291 AIRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH--NENDQQIREGLEKAQRL 352 (359)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCChHHHHHHHHHHHH
Confidence 888888777764 446777777888888888888888888887765 34 35555555555443
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.86 E-value=4.9e-18 Score=166.51 Aligned_cols=334 Identities=9% Similarity=0.005 Sum_probs=224.4
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 007461 151 DAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEA 230 (603)
Q Consensus 151 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 230 (603)
+...+..+...+...|++++|...|+.+....+.+..++..+...+...|++++|+..|+++.+.... +...+..+...
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~ 80 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMD-FTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-cchHHHHHHHH
Confidence 34566677777888888888888888888877777888888888888888888888888887775322 55677778888
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCH
Q 007461 231 YYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEKGILEDPSIYASLICSFASITEV 310 (603)
Q Consensus 231 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~ 310 (603)
+...|++++|...|+++....+... .+...+..+...+. ...+..+...+...|++
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~~ 136 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKSNPSEQ-EEKEAESQLVKADE-----------------------MQRLRSQALDAFDGADY 136 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTSCCCHH-HHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTCH
T ss_pred HHHcCChHHHHHHHHHHHhcCCccc-ChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccCH
Confidence 8888888888888887776543100 12233333311100 00112223444555555
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 007461 311 KLAEELFKEAEEKGMLRDPEVCLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQL 390 (603)
Q Consensus 311 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 390 (603)
++|.+.++.+.+.. +.+...+..+...+...|++++|.+.++.+.+..+ .+..++..+...+...|++++|+..+++.
T Consensus 137 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a 214 (359)
T 3ieg_A 137 TAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKS-DNTEAFYKISTLYYQLGDHELSLSEVREC 214 (359)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCS-CCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 66665555555543 23455555666666666666666666666655543 24455666666666666666666666666
Q ss_pred HHcCCCCCHHHH------------HHHHHHHHhcCChHHHHHHHHHHHHcCCCcCH----hhHHHHHHHHHccCCHHHHH
Q 007461 391 ISQGCIPGQVTY------------ASIINAYCRIALYSKAEKVFIEMQQKGFDKCV----VAYSSMVAMYGKTGRIRDAM 454 (603)
Q Consensus 391 ~~~g~~p~~~~~------------~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~ 454 (603)
.+.. +.+...+ ..+...+.+.|++++|...++++.+.. +.+. ..+..+...+.+.|++++|.
T Consensus 215 ~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~~~~~~A~ 292 (359)
T 3ieg_A 215 LKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE-PSVAEYTVRSKERICHCFSKDEKPVEAI 292 (359)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSSHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HhhC-ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHccCHHHHH
Confidence 5543 1222222 233667889999999999999998875 2233 33556888999999999999
Q ss_pred HHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHh
Q 007461 455 WLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPD-KVSYTTVISAYNR 516 (603)
Q Consensus 455 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~ 516 (603)
..+++..+.. +.+..+|..+...+...|++++|...|+++.+. .|+ ...+..+..+...
T Consensus 293 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~~~ 352 (359)
T 3ieg_A 293 RICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH--NENDQQIREGLEKAQRL 352 (359)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCChHHHHHHHHHHHH
Confidence 9999998862 447889999999999999999999999999965 455 4556666665543
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.84 E-value=5e-16 Score=159.07 Aligned_cols=364 Identities=12% Similarity=0.063 Sum_probs=248.9
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHc----cCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhh----cCcHHHHHHH
Q 007461 137 VSLSEDFKIYNVLPDAHTCSRLVASCVR----ARKFKIANTLLQVFITDGEIALLAFNSAMGGYNK----LHMYYSTILV 208 (603)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~ 208 (603)
...++...+ ..+..++..+...|.. .++++.|...|++..+. .+..++..|...|.. .+++++|++.
T Consensus 27 ~~~~~~~a~---~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~ 101 (490)
T 2xm6_A 27 LEQLKQKAE---SGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ--GYTPAEYVLGLRYMNGEGVPQDYAQAVIW 101 (490)
T ss_dssp HHHHHHHHH---TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred HHHHHHHHH---CCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 344444443 3466777777777776 67888888888887765 356677777777777 7788888888
Q ss_pred HHHHHhCCCCCChhhHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhc----cCCHHHHHH
Q 007461 209 YEKMKSAGIVLDSGCYCQIMEAYYK----IGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGK----SGRAFEALK 280 (603)
Q Consensus 209 ~~~m~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~ 280 (603)
|++..+.| +...+..|...|.. .+++++|.+.|++....+. ..++..|...|.. .+++++|++
T Consensus 102 ~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~------~~a~~~Lg~~y~~g~g~~~d~~~A~~ 172 (490)
T 2xm6_A 102 YKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGR------DSGQQSMGDAYFEGDGVTRDYVMARE 172 (490)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC------HHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred HHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC------HHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 88877764 55667777777777 6788888888887776542 3467777777766 677888888
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCCHHHHHHHH
Q 007461 281 FFRDMKEKGILEDPSIYASLICSFAS----ITEVKLAEELFKEAEEKGMLRDPEVCLKLVLMYIE----EGLVEKTLDVV 352 (603)
Q Consensus 281 ~~~~m~~~g~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~ 352 (603)
.|++..+.| +...+..+...+.. .++.++|.+++++..+.+ ++..+..+...|.. .+++++|.++|
T Consensus 173 ~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~ 246 (490)
T 2xm6_A 173 WYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLF 246 (490)
T ss_dssp HHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred HHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 888777654 56666667666666 677888888887777754 56667777777775 67777777777
Q ss_pred HHHHhCCCCCCHhhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-----CChHHHHHHHH
Q 007461 353 ESMKNAKLKISDCISCAIVNGFSK----RRGYWAAVKVYEQLISQGCIPGQVTYASIINAYCRI-----ALYSKAEKVFI 423 (603)
Q Consensus 353 ~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~-----g~~~~a~~~~~ 423 (603)
++..+.+. ...+..+...+.. .++.++|+..|++..+.| +...+..+...|... ++.++|...|+
T Consensus 247 ~~a~~~~~---~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~ 320 (490)
T 2xm6_A 247 SQSAEQGN---SIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYT 320 (490)
T ss_dssp HHHHTTTC---HHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHH
T ss_pred HHHHHCCC---HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHH
Confidence 77766542 3355556666666 677777777777776554 344555566666655 67777777777
Q ss_pred HHHHcCCCcCHhhHHHHHHHHHccC---CHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHh----cCCHHHHHHHHHHHH
Q 007461 424 EMQQKGFDKCVVAYSSMVAMYGKTG---RIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGR----AKNLRQVEKLWKEME 496 (603)
Q Consensus 424 ~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~ 496 (603)
+..+.+ +...+..+...|.+.| ++++|.+.|++..+.| +...+..|...|.. .+++++|...|++..
T Consensus 321 ~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~ 394 (490)
T 2xm6_A 321 KSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAA 394 (490)
T ss_dssp HHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred HHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 776654 3455666666666545 5667777777776653 55666666666666 677777777777776
Q ss_pred hCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCC
Q 007461 497 RRKVTPDKVSYTTVISAYNR----AREFDMCVKFYNEFRMNGG 535 (603)
Q Consensus 497 ~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~ 535 (603)
+.+ +...+..|...|.. .+++++|...|++..+.+.
T Consensus 395 ~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 395 EQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp HTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred hCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 654 45566666666666 6777777777777776653
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.84 E-value=7e-17 Score=167.18 Aligned_cols=133 Identities=10% Similarity=0.048 Sum_probs=79.6
Q ss_pred CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHH
Q 007461 114 RPEKSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAM 193 (603)
Q Consensus 114 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 193 (603)
+-+...|..++. +.+.|++++|..+|+.+.+.. +.+...|...+..+.+.|+++.|..+|+++....| +...|...+
T Consensus 10 P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p-~~~lw~~~~ 86 (530)
T 2ooe_A 10 PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVL-HIDLWKCYL 86 (530)
T ss_dssp TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCC-CHHHHHHHH
T ss_pred CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-ChHHHHHHH
Confidence 345666777776 356677777777777776653 45566677777777777777777777777766654 555666655
Q ss_pred hhh-hhcCcHHHHHH----HHHHHHh-CCCCC-ChhhHHHHHHHHHH---------cCCHHHHHHHHHHHHh
Q 007461 194 GGY-NKLHMYYSTIL----VYEKMKS-AGIVL-DSGCYCQIMEAYYK---------IGDSEKVAALFLECKS 249 (603)
Q Consensus 194 ~~~-~~~~~~~~a~~----~~~~m~~-~~~~p-~~~~~~~ll~~~~~---------~g~~~~a~~~~~~~~~ 249 (603)
... ...|++++|.+ +|++..+ .|..| +...|...+....+ .|+++.|..+|++...
T Consensus 87 ~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~ 158 (530)
T 2ooe_A 87 SYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCV 158 (530)
T ss_dssp HHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHh
Confidence 432 23455555544 5555443 24333 34455555555544 4566666666666555
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.84 E-value=2.1e-16 Score=163.62 Aligned_cols=127 Identities=9% Similarity=0.069 Sum_probs=79.3
Q ss_pred chhHHHHHHhcCCCChHHHHHHHHHHhhCCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 007461 82 KFDSFLHGMLKDPQTQELAYDYYNEAKKLPEFRPEKSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVAS 161 (603)
Q Consensus 82 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 161 (603)
.|..++. +.+.++..+ |..+|+.+.+. ++.+...|...+..+.+.|++++|..+|+.+.+.. |+...|...+..
T Consensus 15 ~w~~l~~-~~~~~~~~~-a~~~~e~al~~--~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~~~~ 88 (530)
T 2ooe_A 15 AWSILIR-EAQNQPIDK-ARKTYERLVAQ--FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCYLSY 88 (530)
T ss_dssp HHHHHHH-HHHSSCHHH-HHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHHHHH
T ss_pred HHHHHHH-HHHhCCHHH-HHHHHHHHHHH--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHHHHH
Confidence 3666665 344555444 77777777764 35566677777777777777777777777777654 566666666543
Q ss_pred H-HccCChHHHHH----HHHHHHhc---CCcchhhHHHHHhhhhh---------cCcHHHHHHHHHHHHh
Q 007461 162 C-VRARKFKIANT----LLQVFITD---GEIALLAFNSAMGGYNK---------LHMYYSTILVYEKMKS 214 (603)
Q Consensus 162 ~-~~~~~~~~a~~----~~~~~~~~---~~~~~~~~~~l~~~~~~---------~~~~~~a~~~~~~m~~ 214 (603)
. ...|+.+.|.+ +|+..... .+.+...|...+....+ .|++++|..+|++.++
T Consensus 89 ~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~ 158 (530)
T 2ooe_A 89 VRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCV 158 (530)
T ss_dssp HHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTT
T ss_pred HHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHh
Confidence 2 33456555544 55555432 12355667666665544 5677777777777776
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.84 E-value=7.1e-16 Score=157.91 Aligned_cols=365 Identities=12% Similarity=0.056 Sum_probs=284.7
Q ss_pred HHHHHHHHhhCCCCCCCHHhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----cCChHHH
Q 007461 100 AYDYYNEAKKLPEFRPEKSTLKLLIRYLVQ----SKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVR----ARKFKIA 171 (603)
Q Consensus 100 a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a 171 (603)
+++.+....+. .++..+..+...|.. .+++++|..+|+...+.| +..++..|...|.. .+++++|
T Consensus 26 ~~~~~~~~a~~----g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A 98 (490)
T 2xm6_A 26 NLEQLKQKAES----GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQA 98 (490)
T ss_dssp CHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred HHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 56777766653 367788888888887 788899999998887764 56677778888887 7888999
Q ss_pred HHHHHHHHhcCCcchhhHHHHHhhhhh----cCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHH----cCCHHHHHHH
Q 007461 172 NTLLQVFITDGEIALLAFNSAMGGYNK----LHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYK----IGDSEKVAAL 243 (603)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~ 243 (603)
..+|++....+ +..++..|...|.. .+++++|+..|++..+.| +...+..+...|.. .++.++|.+.
T Consensus 99 ~~~~~~a~~~~--~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~ 173 (490)
T 2xm6_A 99 VIWYKKAALKG--LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREW 173 (490)
T ss_dssp HHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred HHHHHHHHHCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 99888887754 56677778777877 778899999998888765 56677788888877 7889999999
Q ss_pred HHHHHhCCCCCCCccHHHHHHHHHHHhc----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----cCCHHHHHH
Q 007461 244 FLECKSRKLDSTPFSTHMYKILCDSLGK----SGRAFEALKFFRDMKEKGILEDPSIYASLICSFAS----ITEVKLAEE 315 (603)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~g~~~~a~~ 315 (603)
|++..+.+ +..++..+...|.. .+++++|++.|++..+.| +...+..+...+.. .++.++|..
T Consensus 174 ~~~a~~~~------~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~ 244 (490)
T 2xm6_A 174 YSKAAEQG------NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRV 244 (490)
T ss_dssp HHHHHHTT------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred HHHHHHCC------CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 98887764 23578888888877 788999999998888764 55667777777765 778899999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhc-----CCHHHHHHH
Q 007461 316 LFKEAEEKGMLRDPEVCLKLVLMYIE----EGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSKR-----RGYWAAVKV 386 (603)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----~~~~~a~~~ 386 (603)
+++...+.+ +...+..+..+|.. .++.++|.+.|++..+.+ +...+..+...|... +++++|+..
T Consensus 245 ~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~ 318 (490)
T 2xm6_A 245 LFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISW 318 (490)
T ss_dssp HHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHH
T ss_pred HHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHH
Confidence 988888764 56777778888887 888899999998887764 344667777777776 888999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcC---ChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHc----cCCHHHHHHHHHH
Q 007461 387 YEQLISQGCIPGQVTYASIINAYCRIA---LYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGK----TGRIRDAMWLVAK 459 (603)
Q Consensus 387 ~~~m~~~g~~p~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~ 459 (603)
|++..+.| +...+..+...|...| +.++|.+.|++..+.+ +...+..+...|.. .+++++|...|++
T Consensus 319 ~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~ 392 (490)
T 2xm6_A 319 YTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRK 392 (490)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred HHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 98888765 4456666777776655 7788888888888764 56778888888887 7888999999988
Q ss_pred HHHcCCCCCHhHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCC
Q 007461 460 MKAKGCEPNVWIYNSLMDMHGR----AKNLRQVEKLWKEMERRKV 500 (603)
Q Consensus 460 m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~ 500 (603)
..+.| +...+..|...|.. .++.++|...|++..+.+.
T Consensus 393 A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 393 AAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp HHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred HHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 88764 56777778888877 7889999999998887653
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.83 E-value=7.6e-18 Score=163.11 Aligned_cols=194 Identities=12% Similarity=0.076 Sum_probs=78.8
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHc
Q 007461 155 CSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKI 234 (603)
Q Consensus 155 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 234 (603)
+..+...+...|++++|..+++++....+.+..++..++..+...|++++|..+++++.+... .+...+..+...+...
T Consensus 25 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~ 103 (330)
T 3hym_B 25 VVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYP-SNPVSWFAVGCYYLMV 103 (330)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TSTHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHh
Confidence 333334444444444444444444444444444444444444444444444444444443321 1333444444444444
Q ss_pred C-CHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHH
Q 007461 235 G-DSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEKGILEDPSIYASLICSFASITEVKLA 313 (603)
Q Consensus 235 g-~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a 313 (603)
| ++++|.+.|++....++.. ...|..+...+...|++++|++.|++..+... .+...+..+...+...|++++|
T Consensus 104 ~~~~~~A~~~~~~a~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A 178 (330)
T 3hym_B 104 GHKNEHARRYLSKATTLEKTY----GPAWIAYGHSFAVESEHDQAMAAYFTAAQLMK-GCHLPMLYIGLEYGLTNNSKLA 178 (330)
T ss_dssp CSCHHHHHHHHHHHHTTCTTC----THHHHHHHHHHHHHTCHHHHHHHHHHHHHHTT-TCSHHHHHHHHHHHHTTCHHHH
T ss_pred hhhHHHHHHHHHHHHHhCCcc----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHhhHHHH
Confidence 4 4444444444444332211 12344444444444444444444444443311 1222333333334444444444
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 007461 314 EELFKEAEEKGMLRDPEVCLKLVLMYIEEGLVEKTLDVVESM 355 (603)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 355 (603)
...++.+.+.. +.+..++..+...|...|++++|...+++.
T Consensus 179 ~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 219 (330)
T 3hym_B 179 ERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDA 219 (330)
T ss_dssp HHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 44444443332 113334444444444444444444444433
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.83 E-value=8.8e-18 Score=162.63 Aligned_cols=288 Identities=11% Similarity=-0.022 Sum_probs=218.2
Q ss_pred CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHH
Q 007461 113 FRPEKSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSA 192 (603)
Q Consensus 113 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l 192 (603)
++.+...+..++..+...|++++|+.+++.+.+.. +.+...+..++..+...|++++|..+++++....+.+..+|..+
T Consensus 18 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 96 (330)
T 3hym_B 18 LQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAV 96 (330)
T ss_dssp --CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHH
T ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHH
Confidence 34566677888888888899999999999888775 45566677777888888999999999999888888888889999
Q ss_pred HhhhhhcC-cHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhc
Q 007461 193 MGGYNKLH-MYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGK 271 (603)
Q Consensus 193 ~~~~~~~~-~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 271 (603)
...+...| ++++|.+.|++..+.... +...+..+...+...|++++|.+.|++.....+.. ...+..+...+..
T Consensus 97 ~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~l~~~~~~ 171 (330)
T 3hym_B 97 GCYYLMVGHKNEHARRYLSKATTLEKT-YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGC----HLPMLYIGLEYGL 171 (330)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHTTCTT-CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTC----SHHHHHHHHHHHH
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcccc----HHHHHHHHHHHHH
Confidence 99999998 899999999988876432 56778888889999999999999998887765442 2467778888999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcC--------CCCCHHHHHHHHHHHHHcC
Q 007461 272 SGRAFEALKFFRDMKEKGILEDPSIYASLICSFASITEVKLAEELFKEAEEKG--------MLRDPEVCLKLVLMYIEEG 343 (603)
Q Consensus 272 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g 343 (603)
.|++++|.+.|++..+.. +.+...+..+...+...|++++|...++++.+.. .+....++..+...|.+.|
T Consensus 172 ~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g 250 (330)
T 3hym_B 172 TNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLK 250 (330)
T ss_dssp TTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTT
T ss_pred HhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhc
Confidence 999999999999988763 3356788888888889999999999998887642 1234567777777777777
Q ss_pred CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 007461 344 LVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINAY 409 (603)
Q Consensus 344 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 409 (603)
++++|.+.+++..+.++. +..++..+...+.+.|++++|...|++..+.. +.+...+..+..++
T Consensus 251 ~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 314 (330)
T 3hym_B 251 KYAEALDYHRQALVLIPQ-NASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCI 314 (330)
T ss_dssp CHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhCcc-chHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHH
Confidence 777777777777665542 44566666677777777777777777665543 22444555555544
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.81 E-value=1.4e-17 Score=163.93 Aligned_cols=307 Identities=9% Similarity=0.008 Sum_probs=172.1
Q ss_pred HcCCHHHHHH-HHHHHHhCCCCCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHH
Q 007461 233 KIGDSEKVAA-LFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEKGILEDPSIYASLICSFASITEVK 311 (603)
Q Consensus 233 ~~g~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~ 311 (603)
-.|++++|.. .|++...........+...+..+...+.+.|++++|+..|+++.+.. +.+...+..+..++...|+++
T Consensus 37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~ 115 (368)
T 1fch_A 37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQEL 115 (368)
T ss_dssp ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHH
Confidence 3467777776 66654433222111123456677777777888888888887777653 235566777777777777777
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007461 312 LAEELFKEAEEKGMLRDPEVCLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLI 391 (603)
Q Consensus 312 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 391 (603)
+|...++.+.+.. +.+..++..+...|...|++++|.+.++++....+... ..+..+... .. .
T Consensus 116 ~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~~~-------~~-------~- 178 (368)
T 1fch_A 116 LAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYA-HLVTPAEEG-------AG-------G- 178 (368)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTG-GGCC-----------------------
T ss_pred HHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-HHHHHHHHH-------hh-------h-
Confidence 7777777777664 33667777777777888888888888877776654321 111111000 00 0
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCc-CHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHh
Q 007461 392 SQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQKGFDK-CVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVW 470 (603)
Q Consensus 392 ~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 470 (603)
..+. ..+. .+..+...|++++|...|+++.+..... +..++..+...|.+.|++++|...+++..+.. +.+..
T Consensus 179 ---~~~~-~~~~-~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~ 252 (368)
T 1fch_A 179 ---AGLG-PSKR-ILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYL 252 (368)
T ss_dssp -----------C-TTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHH
T ss_pred ---hccc-HHHH-HHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHH
Confidence 0000 0011 1122225566666666666665543111 35566666666666666666666666665541 23455
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC----------CHH
Q 007461 471 IYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNRAREFDMCVKFYNEFRMNGGVI----------DRA 540 (603)
Q Consensus 471 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~----------~~~ 540 (603)
.|..+...+...|++++|...++++.+.. +.+...+..+..+|.+.|++++|...++++.+..... ...
T Consensus 253 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 331 (368)
T 1fch_A 253 LWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSEN 331 (368)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhH
Confidence 66666666666666666666666665432 2234556666666666667777766666665432211 145
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHH
Q 007461 541 IAGIMVGVFSKLSQIEELVKLLQD 564 (603)
Q Consensus 541 ~~~~l~~~~~~~g~~~~A~~~~~~ 564 (603)
.|..+..+|.+.|++++|..++++
T Consensus 332 ~~~~l~~~~~~~g~~~~A~~~~~~ 355 (368)
T 1fch_A 332 IWSTLRLALSMLGQSDAYGAADAR 355 (368)
T ss_dssp HHHHHHHHHHHHTCGGGHHHHHTT
T ss_pred HHHHHHHHHHHhCChHhHHHhHHH
Confidence 666677777777777776666553
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.80 E-value=8.2e-15 Score=157.14 Aligned_cols=383 Identities=9% Similarity=0.125 Sum_probs=275.9
Q ss_pred CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHH
Q 007461 115 PEKSTLKLLIRYLVQSKKWDSIVSLSEDFKIYN--VLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSA 192 (603)
Q Consensus 115 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l 192 (603)
-++.-....+++|...|.+.+|++++++....+ +..+....+.++....+. +..+..+......... ...+
T Consensus 983 ~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d------~~eI 1055 (1630)
T 1xi4_A 983 QDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD------APDI 1055 (1630)
T ss_pred cCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc------HHHH
Confidence 455556677788888999999999999887332 113455666677666666 4555655555544221 3346
Q ss_pred HhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhcc
Q 007461 193 MGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKS 272 (603)
Q Consensus 193 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 272 (603)
...+...|.+++|..+|++... .....+.++ -..|++++|.++.+++.. ..+|..+..++.+.
T Consensus 1056 A~Iai~lglyEEAf~IYkKa~~-----~~~A~~VLi---e~i~nldrAiE~Aervn~---------p~vWsqLAKAql~~ 1118 (1630)
T 1xi4_A 1056 ANIAISNELFEEAFAIFRKFDV-----NTSAVQVLI---EHIGNLDRAYEFAERCNE---------PAVWSQLAKAQLQK 1118 (1630)
T ss_pred HHHHHhCCCHHHHHHHHHHcCC-----HHHHHHHHH---HHHhhHHHHHHHHHhcCC---------HHHHHHHHHHHHhC
Confidence 7778889999999999988521 111222232 277889999998886522 25799999999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 007461 273 GRAFEALKFFRDMKEKGILEDPSIYASLICSFASITEVKLAEELFKEAEEKGMLRDPEVCLKLVLMYIEEGLVEKTLDVV 352 (603)
Q Consensus 273 g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 352 (603)
|++++|++.|.+. -|...|..++.++.+.|++++|.+.+....+.. +++.+.+.++.+|++.+++++.....
T Consensus 1119 G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI 1190 (1630)
T 1xi4_A 1119 GMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI 1190 (1630)
T ss_pred CCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH
Confidence 9999999999653 367788889999999999999999998877764 34444456888999999888644442
Q ss_pred HHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCc
Q 007461 353 ESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQKGFDK 432 (603)
Q Consensus 353 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 432 (603)
+ .++...|..+...|...|++++|..+|... ..|..+...+.+.|++++|.+.+++. .
T Consensus 1191 ----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~ 1248 (1630)
T 1xi4_A 1191 ----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------N 1248 (1630)
T ss_pred ----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------C
Confidence 1 234556777889999999999999999885 36888999999999999999998876 3
Q ss_pred CHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHH
Q 007461 433 CVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDK-VSYTTVI 511 (603)
Q Consensus 433 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~-~~~~~li 511 (603)
+..+|..+-.+|...|++..|......+ ..+...+..++..|.+.|.+++|+.+++..+. +.|.. ..|+-+.
T Consensus 1249 n~~aWkev~~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~--LeraH~gmftELa 1321 (1630)
T 1xi4_A 1249 STRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALG--LERAHMGMFTELA 1321 (1630)
T ss_pred CHHHHHHHHHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc--cChhHhHHHHHHH
Confidence 4688888888898899988888876643 34666677888999999999999999988773 34333 4566666
Q ss_pred HHHHhc--CCHHHHHHHHHHHHHCCCC------CCHHHHHHHHHHHHccCCHHHHHH
Q 007461 512 SAYNRA--REFDMCVKFYNEFRMNGGV------IDRAIAGIMVGVFSKLSQIEELVK 560 (603)
Q Consensus 512 ~~~~~~--g~~~~a~~~~~~~~~~~~~------~~~~~~~~l~~~~~~~g~~~~A~~ 560 (603)
..|++. ++..++.++|..-.. +. -+...|.-++..|.+.|+++.|..
T Consensus 1322 iLyaKy~peklmEhlk~f~~rin--i~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1322 ILYSKFKPQKMREHLELFWSRVN--IPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred HHHHhCCHHHHHHHHHHHHHhcc--cchHhHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 666654 344444444442211 11 134568888889999999998883
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.80 E-value=1.4e-17 Score=164.13 Aligned_cols=302 Identities=9% Similarity=-0.062 Sum_probs=166.8
Q ss_pred cCChHHHHH-HHHHHHhcCCc----chhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCHHH
Q 007461 165 ARKFKIANT-LLQVFITDGEI----ALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEK 239 (603)
Q Consensus 165 ~~~~~~a~~-~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~ 239 (603)
.|+++.|.. .+++.....+. +...+..+...+.+.|++++|+..|+++.+... .+..++..+...+.+.|++++
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~ 116 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDP-KHMEAWQYLGTTQAENEQELL 116 (368)
T ss_dssp --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCcCHHH
Confidence 356666666 66654443332 345566777777777777777777777776542 255667777777777777777
Q ss_pred HHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 007461 240 VAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEKGILEDPSIYASLICSFASITEVKLAEELFKE 319 (603)
Q Consensus 240 a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 319 (603)
|...|+++...++. +..+|..+...+...|++++|++.|+++...... +...+..+... ..
T Consensus 117 A~~~~~~al~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~-------~~------- 177 (368)
T 1fch_A 117 AISALRRCLELKPD----NQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEG-------AG------- 177 (368)
T ss_dssp HHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------------
T ss_pred HHHHHHHHHhcCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHH-------hh-------
Confidence 77777777665432 2456777777777777777777777777665321 11111111000 00
Q ss_pred HHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 007461 320 AEEKGMLRDPEVCLKLVLMYIEEGLVEKTLDVVESMKNAKLKI-SDCISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPG 398 (603)
Q Consensus 320 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~ 398 (603)
... ....+..+...+ ..|++++|...|+++.+.++.. +..++..+...+...|++++|+..|+++.... +.+
T Consensus 178 ----~~~-~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~ 250 (368)
T 1fch_A 178 ----GAG-LGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PND 250 (368)
T ss_dssp -------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC
T ss_pred ----hhc-ccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCC
Confidence 000 000011111222 5555666666666555544321 34455566666666666666666666655543 234
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCC----------CC
Q 007461 399 QVTYASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCE----------PN 468 (603)
Q Consensus 399 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~----------p~ 468 (603)
...+..+...+...|++++|...|+++.+.. +.+...+..+...|.+.|++++|...|++..+..-. ..
T Consensus 251 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 329 (368)
T 1fch_A 251 YLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMS 329 (368)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchh
Confidence 5566666666666666666666666666553 444566666666666667777777666666543100 01
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHH
Q 007461 469 VWIYNSLMDMHGRAKNLRQVEKLWKE 494 (603)
Q Consensus 469 ~~~~~~li~~~~~~g~~~~a~~~~~~ 494 (603)
..+|..+..+|...|+.++|..++++
T Consensus 330 ~~~~~~l~~~~~~~g~~~~A~~~~~~ 355 (368)
T 1fch_A 330 ENIWSTLRLALSMLGQSDAYGAADAR 355 (368)
T ss_dssp HHHHHHHHHHHHHHTCGGGHHHHHTT
T ss_pred hHHHHHHHHHHHHhCChHhHHHhHHH
Confidence 45666677777777777776666553
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.80 E-value=1.6e-14 Score=154.96 Aligned_cols=447 Identities=14% Similarity=0.102 Sum_probs=319.1
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHhhC---CCCCCCHHhHHHHHHHHHhcCCHH---HHH--------HHHHHHHhCCC--
Q 007461 85 SFLHGMLKDPQTQELAYDYYNEAKKL---PEFRPEKSTLKLLIRYLVQSKKWD---SIV--------SLSEDFKIYNV-- 148 (603)
Q Consensus 85 ~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~p~~~~~~~l~~~~~~~~~~~---~a~--------~~~~~~~~~~~-- 148 (603)
.++..+|...+.. +|.-.|++-.-. -.+.-....|....+.++++.+.+ .++ ++.+......+
T Consensus 903 ~~vgkyce~rDp~-la~iay~~g~~d~eli~vt~~n~l~k~~arylv~r~d~~lW~~vl~~~n~~RR~Lidqv~a~aL~e 981 (1630)
T 1xi4_A 903 RVVGKYCEKRDPH-LACVAYERGQCDLELINVCNENSLFKSLSRYLVRRKDPELWGSVLLESNPYRRPLIDQVVQTALSE 981 (1630)
T ss_pred HHHHHHHHhcCcc-hHHHHhcccCCcHHHHHHHhcchhHHHHHHHHHHhcCHHHHHHHhcCCcHHHHHHHHHHHHhhccc
Confidence 4456677665543 466666531000 001223345666666666665533 221 22222222211
Q ss_pred CCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCC---cchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHH
Q 007461 149 LPDAHTCSRLVASCVRARKFKIANTLLQVFITDGE---IALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYC 225 (603)
Q Consensus 149 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~ 225 (603)
.-++.--...+++|...|.+.+|+++++++.-.+. .+...-+.++.+..+. +..+..+..++.... ...
T Consensus 982 ~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~-------d~~ 1053 (1630)
T 1xi4_A 982 TQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY-------DAP 1053 (1630)
T ss_pred ccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc-------cHH
Confidence 23444556678888899999999999999985544 3455566677766666 556666666655422 234
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 007461 226 QIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEKGILEDPSIYASLICSFA 305 (603)
Q Consensus 226 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 305 (603)
-+...+...|.+++|..+|++.... ..+.+.++. ..|++++|.++.++. -+..+|..+..++.
T Consensus 1054 eIA~Iai~lglyEEAf~IYkKa~~~--------~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql 1116 (1630)
T 1xi4_A 1054 DIANIAISNELFEEAFAIFRKFDVN--------TSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQL 1116 (1630)
T ss_pred HHHHHHHhCCCHHHHHHHHHHcCCH--------HHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHH
Confidence 4778888999999999999986310 122333332 778899999998865 24678999999999
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHH
Q 007461 306 SITEVKLAEELFKEAEEKGMLRDPEVCLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRRGYWAAVK 385 (603)
Q Consensus 306 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 385 (603)
..|++++|.+.|.+. -|...|..++..+.+.|++++|.+.+....+....+. ..+.++.+|++.+++++...
T Consensus 1117 ~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~--Idt~LafaYAKl~rleele~ 1188 (1630)
T 1xi4_A 1117 QKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESY--VETELIFALAKTNRLAELEE 1188 (1630)
T ss_pred hCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccccc--ccHHHHHHHHhhcCHHHHHH
Confidence 999999999999664 4788889999999999999999999998777653322 34458999999999886444
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCC
Q 007461 386 VYEQLISQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGC 465 (603)
Q Consensus 386 ~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 465 (603)
+. . .++...|..+...|...|++++|..+|... ..|..+...|.+.|++++|.+.+++..
T Consensus 1189 fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~---- 1248 (1630)
T 1xi4_A 1189 FI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN---- 1248 (1630)
T ss_pred HH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC----
Confidence 32 2 456677888999999999999999999984 489999999999999999999998763
Q ss_pred CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 007461 466 EPNVWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNRAREFDMCVKFYNEFRMNGGVIDRAIAGIM 545 (603)
Q Consensus 466 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 545 (603)
+..+|..+-.+|...|++..|......+ ..+...+..++..|.+.|.+++|+.+++...... .-....|+-+
T Consensus 1249 --n~~aWkev~~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftEL 1320 (1630)
T 1xi4_A 1249 --STRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTEL 1320 (1630)
T ss_pred --CHHHHHHHHHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHH
Confidence 6789999999999999999998876653 2355667799999999999999999998887654 2244566666
Q ss_pred HHHHHcc--CCHHHHHHHHHHHHhCCCCC------CHHHHHHHHHHHHhcCcHHHHHH
Q 007461 546 VGVFSKL--SQIEELVKLLQDMKSEGTKL------DERLYHSAMNALRDAGLQMQAQW 595 (603)
Q Consensus 546 ~~~~~~~--g~~~~A~~~~~~m~~~g~~~------~~~~~~~ll~a~~~~g~~~~a~~ 595 (603)
...|.+. ++..++.++|..-. .+++ +...|..++-.|.+.|+++.|..
T Consensus 1321 aiLyaKy~peklmEhlk~f~~ri--ni~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1321 AILYSKFKPQKMREHLELFWSRV--NIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred HHHHHhCCHHHHHHHHHHHHHhc--ccchHhHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 6666653 45566666655332 2322 46779999999999999999884
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.79 E-value=6.2e-17 Score=155.82 Aligned_cols=330 Identities=11% Similarity=0.110 Sum_probs=118.3
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhh
Q 007461 118 STLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYN 197 (603)
Q Consensus 118 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 197 (603)
.+|..|+.++.+.|++++|++.|.+ .+|..+|..++..+...|++++|+..++...+. .+++.+.+.++.+|.
T Consensus 33 ~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~-~~~~~i~~~Li~~Y~ 105 (449)
T 1b89_A 33 AVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQMARKK-ARESYVETELIFALA 105 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh-CccchhHHHHHHHHH
Confidence 4666666666666666666666643 245555666666666666666666655544442 333455555666666
Q ss_pred hcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccCCHHH
Q 007461 198 KLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFE 277 (603)
Q Consensus 198 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 277 (603)
+.|+++++.++++ .|+..+|..+...|...|.+++|...|..+. .|..++.++.+.|++++
T Consensus 106 Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a~------------n~~~LA~~L~~Lg~yq~ 166 (449)
T 1b89_A 106 KTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS------------NFGRLASTLVHLGEYQA 166 (449)
T ss_dssp ---CHHHHTTTTT-------CC----------------CTTTHHHHHHHTT------------CHHHHHHHHHTTTCHHH
T ss_pred HhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHhh------------hHHHHHHHHHHhccHHH
Confidence 6666665555553 2444456666666666666666666665441 25666666666666666
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 007461 278 ALKFFRDMKEKGILEDPSIYASLICSFASITEVKLAEELFKEAEEKGMLRDPEVCLKLVLMYIEEGLVEKTLDVVESMKN 357 (603)
Q Consensus 278 A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 357 (603)
|++.++++ .+..+|..++.+|...|+++.|...... +..++.-...++..|.+.|.+++|..+++....
T Consensus 167 AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~ 235 (449)
T 1b89_A 167 AVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALG 235 (449)
T ss_dssp HHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred HHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhC
Confidence 66666555 1455566666666666666655332221 222333333445555555555555555555444
Q ss_pred CCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCc-----
Q 007461 358 AKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQKGFDK----- 432 (603)
Q Consensus 358 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~----- 432 (603)
.+ +-....|+-+.-.|++- +.+++.+.++.|.. +.+++|
T Consensus 236 le-~ah~~~ftel~il~~ky---------------------------------~p~k~~ehl~~~~~--~ini~k~~~~~ 279 (449)
T 1b89_A 236 LE-RAHMGMFTELAILYSKF---------------------------------KPQKMREHLELFWS--RVNIPKVLRAA 279 (449)
T ss_dssp ST-TCCHHHHHHHHHHHHTT---------------------------------CHHHHHHHHHHHST--TSCHHHHHHHH
T ss_pred Cc-HHHHHHHHHHHHHHHhc---------------------------------CHHHHHHHHHHHHH--HhcCcHHHHHH
Confidence 33 22333333333333321 12222223332221 112222
Q ss_pred -CHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 007461 433 -CVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDKVSYTTVI 511 (603)
Q Consensus 433 -~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li 511 (603)
+...|..++..|.+.++++.|..+ |.++ +|+..--..+.....+..+.+--.+...-.++. .| ..++-|+
T Consensus 280 ~~~~~w~e~~~ly~~~~e~d~A~~t---m~~h--~~~a~~~~~f~~~~~kv~n~elyYkai~fyl~~--~p--~~l~~ll 350 (449)
T 1b89_A 280 EQAHLWAELVFLYDKYEEYDNAIIT---MMNH--PTDAWKEGQFKDIITKVANVELYYRAIQFYLEF--KP--LLLNDLL 350 (449)
T ss_dssp HTTTCHHHHHHHHHHTTCHHHHHHH---HHHS--TTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHH--CG--GGHHHHH
T ss_pred HHHHHHHHHHHHHHhhchHHHHHHH---HHhC--ChhhhhhHHHHHHHhchhHHHHHHHHHHHHHhc--CH--HHHHHHH
Confidence 356788888888888888888763 4443 344444444455555555555544444444422 22 3355566
Q ss_pred HHHHhcCCHHHHHHHHHH
Q 007461 512 SAYNRAREFDMCVKFYNE 529 (603)
Q Consensus 512 ~~~~~~g~~~~a~~~~~~ 529 (603)
.++...=|..++..+|++
T Consensus 351 ~~l~~~ld~~r~v~~~~~ 368 (449)
T 1b89_A 351 MVLSPRLDHTRAVNYFSK 368 (449)
T ss_dssp HHHGGGCCHHHHHHHHHH
T ss_pred HHHHhccCcHHHHHHHHH
Confidence 666555555555555543
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.78 E-value=9.6e-17 Score=154.53 Aligned_cols=236 Identities=11% Similarity=0.127 Sum_probs=113.3
Q ss_pred CChhchhHHHHHHhcCCCChHHHHHHHHHHhhCCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 007461 78 PDAKKFDSFLHGMLKDPQTQELAYDYYNEAKKLPEFRPEKSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSR 157 (603)
Q Consensus 78 p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 157 (603)
+++..|..+..++.+.++..+ |.+.|.+ .+|...|..++..+...|++++|+.+++..++. .+++.+.+.
T Consensus 30 ~~~~vWs~La~A~l~~g~~~e-AIdsfik-------a~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~--~~~~~i~~~ 99 (449)
T 1b89_A 30 NEPAVWSQLAKAQLQKGMVKE-AIDSYIK-------ADDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETE 99 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CChHHHHHHHHHHHHcCCHHH-HHHHHHc-------CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CccchhHHH
Confidence 444579999999999999988 9999964 257779999999999999999999988877764 566888999
Q ss_pred HHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCH
Q 007461 158 LVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDS 237 (603)
Q Consensus 158 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~ 237 (603)
++.+|.+.|+++++.++++ .|+..+|+.+...|...|.+++|...|..+ ..|..++.++.+.|++
T Consensus 100 Li~~Y~Klg~l~e~e~f~~------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~~Lg~y 164 (449)
T 1b89_A 100 LIFALAKTNRLAELEEFIN------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEY 164 (449)
T ss_dssp ---------CHHHHTTTTT------CC----------------CTTTHHHHHHHT---------TCHHHHHHHHHTTTCH
T ss_pred HHHHHHHhCCHHHHHHHHc------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHHHHHHHhccH
Confidence 9999999999999988774 356679999999999999999999999976 3799999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 007461 238 EKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEKGILEDPSIYASLICSFASITEVKLAEELF 317 (603)
Q Consensus 238 ~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 317 (603)
++|.+.++++. ++.+|..++.+|...|+++.|......+. +.| .-...++..|.+.|.++++..++
T Consensus 165 q~AVea~~KA~---------~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~---~~a--d~l~~lv~~Yek~G~~eEai~lL 230 (449)
T 1b89_A 165 QAAVDGARKAN---------STRTWKEVCFACVDGKEFRLAQMCGLHIV---VHA--DELEELINYYQDRGYFEELITML 230 (449)
T ss_dssp HHHHHHHHHHT---------CHHHHHHHHHHHHHTTCHHHHHHTTTTTT---TCH--HHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHcC---------CchhHHHHHHHHHHcCcHHHHHHHHHHHH---hCH--hhHHHHHHHHHHCCCHHHHHHHH
Confidence 99999999881 24789999999999999999977655432 234 44557889999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHHc--CCHHHHHHHHH
Q 007461 318 KEAEEKGMLRDPEVCLKLVLMYIEE--GLVEKTLDVVE 353 (603)
Q Consensus 318 ~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~a~~~~~ 353 (603)
+...... +-....|+-|.-.|++- +++.+.++.|.
T Consensus 231 e~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~ 267 (449)
T 1b89_A 231 EAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFW 267 (449)
T ss_dssp HHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHS
T ss_pred HHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 9998765 55678888887777764 34445555444
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.77 E-value=3.8e-17 Score=160.77 Aligned_cols=233 Identities=11% Similarity=0.028 Sum_probs=121.7
Q ss_pred chhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccHHHHHH
Q 007461 185 ALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKI 264 (603)
Q Consensus 185 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 264 (603)
+...|..+...+.+.|++++|+..|+++.+... .+..++..+...|.+.|++++|...|+++...++. +..+|..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~ 138 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDP-GDAEAWQFLGITQAENENEQAAIVALQRCLELQPN----NLKALMA 138 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----CHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC----CHHHHHH
Confidence 445566777777777777777777777766532 25666777777777777777777777776665432 2456777
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHCCCCCCH-----------HHHHHHHHHHHccCCHHHHHHHHHHHHHcCCC-CCHHHH
Q 007461 265 LCDSLGKSGRAFEALKFFRDMKEKGILEDP-----------SIYASLICSFASITEVKLAEELFKEAEEKGML-RDPEVC 332 (603)
Q Consensus 265 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-----------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~ 332 (603)
+...|...|++++|++.|+++.+. .|+. ..+..+...+...|++++|...++++.+.... .+..++
T Consensus 139 l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 216 (365)
T 4eqf_A 139 LAVSYTNTSHQQDACEALKNWIKQ--NPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQ 216 (365)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHH
T ss_pred HHHHHHccccHHHHHHHHHHHHHh--CccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHH
Confidence 777777777777777777777653 2221 11222344444555555555555555544321 134445
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 007461 333 LKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINAYCRI 412 (603)
Q Consensus 333 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 412 (603)
..+...|.+.|++++|.+.|++..+..+ .+..+|..+...+...|++++|+..|++..+.. +.+..++..+...|...
T Consensus 217 ~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~ 294 (365)
T 4eqf_A 217 TGLGVLFHLSGEFNRAIDAFNAALTVRP-EDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINL 294 (365)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHC
Confidence 5555555555555555555555444333 133344444444444444444444444444332 12233444444444444
Q ss_pred CChHHHHHHHHHHH
Q 007461 413 ALYSKAEKVFIEMQ 426 (603)
Q Consensus 413 g~~~~a~~~~~~~~ 426 (603)
|++++|...|+++.
T Consensus 295 g~~~~A~~~~~~al 308 (365)
T 4eqf_A 295 GAYREAVSNFLTAL 308 (365)
T ss_dssp TCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 44444444444443
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.77 E-value=8.2e-17 Score=158.34 Aligned_cols=263 Identities=9% Similarity=-0.057 Sum_probs=164.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 007461 332 CLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINAYCR 411 (603)
Q Consensus 332 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 411 (603)
+..+...+.+.|++++|.+.|+++.+.++ .+..+|..+...+...|++++|+..|+++.+.. +.+..++..+...|..
T Consensus 68 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~ 145 (365)
T 4eqf_A 68 AFEEGLKRLKEGDLPVTILFMEAAILQDP-GDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSYTN 145 (365)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHc
Confidence 44444445555555555555555544433 234445555555555555555555555555432 2334555555555666
Q ss_pred cCChHHHHHHHHHHHHcCCCc----------CHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCC-CCHhHHHHHHHHHH
Q 007461 412 IALYSKAEKVFIEMQQKGFDK----------CVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCE-PNVWIYNSLMDMHG 480 (603)
Q Consensus 412 ~g~~~~a~~~~~~~~~~~~~~----------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~~~~~~~li~~~~ 480 (603)
.|++++|...|+++.+.. +. ....+..+...+.+.|++++|...++++.+..-. ++..+|..+...|.
T Consensus 146 ~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~ 224 (365)
T 4eqf_A 146 TSHQQDACEALKNWIKQN-PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFH 224 (365)
T ss_dssp TTCHHHHHHHHHHHHHHC-HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhC-ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHH
Confidence 666666666666555432 11 1223344577777888888888888888775211 15777888888888
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 007461 481 RAKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNRAREFDMCVKFYNEFRMNGGVIDRAIAGIMVGVFSKLSQIEELVK 560 (603)
Q Consensus 481 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 560 (603)
..|++++|...++++.+.. +.+..+|..+..+|...|++++|+..++++.+.... +...+..+..+|.+.|++++|.+
T Consensus 225 ~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~ 302 (365)
T 4eqf_A 225 LSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPG-FIRSRYNLGISCINLGAYREAVS 302 (365)
T ss_dssp HHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHCCCHHHHHH
Confidence 8888888888888887643 235677888888888888888888888888776432 46778888888888888888888
Q ss_pred HHHHHHhCCCC-----------CCHHHHHHHHHHHHhcCcHHHHHHHHhh
Q 007461 561 LLQDMKSEGTK-----------LDERLYHSAMNALRDAGLQMQAQWLQQN 599 (603)
Q Consensus 561 ~~~~m~~~g~~-----------~~~~~~~~ll~a~~~~g~~~~a~~~~~~ 599 (603)
.++++.+..-. .+..+|..+..++...|+.+.+..+.++
T Consensus 303 ~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 303 NFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 88887764210 1356788888888889999888887764
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.75 E-value=7.9e-16 Score=148.61 Aligned_cols=276 Identities=10% Similarity=-0.028 Sum_probs=159.2
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHH
Q 007461 296 IYASLICSFASITEVKLAEELFKEAEEKGMLRDPEVCLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFS 375 (603)
Q Consensus 296 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 375 (603)
.+..+...+...|++++|..+++++.+... .+...+..+...+...|++++|.+.++++.+.++ .+..++..+...+.
T Consensus 23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~ 100 (327)
T 3cv0_A 23 NPMEEGLSMLKLANLAEAALAFEAVCQAAP-EREEAWRSLGLTQAENEKDGLAIIALNHARMLDP-KDIAVHAALAVSHT 100 (327)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc-CCHHHHHHHHHHHH
Confidence 344455555556666666666666555432 2445555555555555555555555555554433 23344444555555
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHH-HH-HHHccCCHHHH
Q 007461 376 KRRGYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSM-VA-MYGKTGRIRDA 453 (603)
Q Consensus 376 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l-i~-~~~~~g~~~~A 453 (603)
..|++++|+..++++.+... .+...+..+... .|+......+ .. .+...|++++|
T Consensus 101 ~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~A 157 (327)
T 3cv0_A 101 NEHNANAALASLRAWLLSQP-QYEQLGSVNLQA----------------------DVDIDDLNVQSEDFFFAAPNEYREC 157 (327)
T ss_dssp HTTCHHHHHHHHHHHHHTST-TTTTC------------------------------------------CCTTSHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCC-ccHHHHHHHhHH----------------------HHHHHHHHHHHHhHHHHHcccHHHH
Confidence 55555555555555444321 111111111000 0000000011 22 25566777777
Q ss_pred HHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 007461 454 MWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNRAREFDMCVKFYNEFRMN 533 (603)
Q Consensus 454 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 533 (603)
.+.++++.+.. +.+...+..+...|...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.
T Consensus 158 ~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 235 (327)
T 3cv0_A 158 RTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDI 235 (327)
T ss_dssp HHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 77777776652 3356677777777777777777777777776542 224566777777777888888888888877765
Q ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC-----------CHHHHHHHHHHHHhcCcHHHHHHHHhh
Q 007461 534 GGVIDRAIAGIMVGVFSKLSQIEELVKLLQDMKSEGTKL-----------DERLYHSAMNALRDAGLQMQAQWLQQN 599 (603)
Q Consensus 534 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~-----------~~~~~~~ll~a~~~~g~~~~a~~~~~~ 599 (603)
... +...+..+..++.+.|++++|.+.++++.+..... +...|..+..++.+.|+.++|..++++
T Consensus 236 ~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 311 (327)
T 3cv0_A 236 NPG-YVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQ 311 (327)
T ss_dssp CTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTC
T ss_pred CCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 432 56677777778888888888888888777642111 356777777888888888888877764
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.75 E-value=4.5e-16 Score=150.33 Aligned_cols=96 Identities=6% Similarity=-0.162 Sum_probs=53.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhh
Q 007461 119 TLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNK 198 (603)
Q Consensus 119 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 198 (603)
.+..+...+...|++++|+.+++++.+.. +.+..++..+...+...|++++|...++++....+.+..++..+...+..
T Consensus 23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~ 101 (327)
T 3cv0_A 23 NPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 101 (327)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHH
Confidence 34445555555566666666665555543 33455555555555555566666655555555555555555555555555
Q ss_pred cCcHHHHHHHHHHHHhC
Q 007461 199 LHMYYSTILVYEKMKSA 215 (603)
Q Consensus 199 ~~~~~~a~~~~~~m~~~ 215 (603)
.|++++|++.++++.+.
T Consensus 102 ~~~~~~A~~~~~~~~~~ 118 (327)
T 3cv0_A 102 EHNANAALASLRAWLLS 118 (327)
T ss_dssp TTCHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 55555555555555543
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.75 E-value=2.6e-18 Score=178.24 Aligned_cols=117 Identities=12% Similarity=0.243 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHH---cCCCcCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhHHHHHH
Q 007461 400 VTYASIINAYCRIALYSKAEKVFIEMQQ---KGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLM 476 (603)
Q Consensus 400 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li 476 (603)
.||+++|++|++.|++++|.++|++|.+ .|+.||+.+||+||++|++.|++++|.++|++|.+.|+.||..|||+||
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI 207 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAAL 207 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 4566666666666666666666655542 3556666666666666666666666666666666666666666666666
Q ss_pred HHHHhcCC-HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 007461 477 DMHGRAKN-LRQVEKLWKEMERRKVTPDKVSYTTVISAYNR 516 (603)
Q Consensus 477 ~~~~~~g~-~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 516 (603)
.++++.|+ .++|.++|++|.+.|+.||..+|+.++.++.+
T Consensus 208 ~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR 248 (1134)
T 3spa_A 208 QCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR 248 (1134)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHH
T ss_pred HHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhH
Confidence 66666665 35566666666666666666666666654443
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.74 E-value=9.6e-15 Score=148.98 Aligned_cols=390 Identities=12% Similarity=0.044 Sum_probs=202.3
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHhc---------CCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHhC-----C-
Q 007461 152 AHTCSRLVASCVRARKFKIANTLLQVFITD---------GEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSA-----G- 216 (603)
Q Consensus 152 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-----~- 216 (603)
...|+.|...+...|++++|++.|++..+. .+....+|+.+...|...|++++|...+++..+. +
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 456677777777777777777777765432 1223455666666666666666666666655431 0
Q ss_pred CCC-ChhhHHHHHHHHHHcC--CHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHH---HhccCCHHHHHHHHHHHHHCCC
Q 007461 217 IVL-DSGCYCQIMEAYYKIG--DSEKVAALFLECKSRKLDSTPFSTHMYKILCDS---LGKSGRAFEALKFFRDMKEKGI 290 (603)
Q Consensus 217 ~~p-~~~~~~~ll~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~---~~~~g~~~~A~~~~~~m~~~g~ 290 (603)
..+ ...++..+..++...| ++++|.+.|++..+.++. +...+..+... +...++.++|++.|++..+..
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~----~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~- 205 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK----NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN- 205 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT----CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-
T ss_pred cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-
Confidence 011 2334444444444433 466666666666555432 12334433333 233455566666666655432
Q ss_pred CCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhh
Q 007461 291 LEDPSIYASLICSFAS----ITEVKLAEELFKEAEEKGMLRDPEVCLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCI 366 (603)
Q Consensus 291 ~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 366 (603)
+.+...+..+...+.. .|+.++|.+.+++..+.. +.+..++..+...|...|++++|.+.+++..+..+. +..+
T Consensus 206 p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~ 283 (472)
T 4g1t_A 206 PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN-NAYL 283 (472)
T ss_dssp SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHH
T ss_pred CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-hHHH
Confidence 1133344433333332 344555666666655543 234555566666666666666666666666555442 3334
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHc
Q 007461 367 SCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGK 446 (603)
Q Consensus 367 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 446 (603)
+..+...|...+.... ... ...........+..++|...++...+.. +.+...+..+...|.+
T Consensus 284 ~~~lg~~y~~~~~~~~---------~~~-------~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~ 346 (472)
T 4g1t_A 284 HCQIGCCYRAKVFQVM---------NLR-------ENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHAL 346 (472)
T ss_dssp HHHHHHHHHHHHHHHH---------HC-------------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhh---------hHH-------HHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHH
Confidence 4444433322111000 000 0000000111233567888888877765 5566788888999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHh--HHHHHHH-HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 007461 447 TGRIRDAMWLVAKMKAKGCEPNVW--IYNSLMD-MHGRAKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNRAREFDMC 523 (603)
Q Consensus 447 ~g~~~~A~~~~~~m~~~~~~p~~~--~~~~li~-~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a 523 (603)
.|++++|.+.|++..+....+... .+..+.. .....|+.++|+..|++.++. .|+..... +..+.+
T Consensus 347 ~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i--~~~~~~~~---------~~~~~l 415 (472)
T 4g1t_A 347 ADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI--NQKSREKE---------KMKDKL 415 (472)
T ss_dssp TTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS--CCCCHHHH---------HHHHHH
T ss_pred hccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHH---------HHHHHH
Confidence 999999999999988753322211 1222222 234678999999999998854 45543222 223445
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCC-CCCCHHHH
Q 007461 524 VKFYNEFRMNGGVIDRAIAGIMVGVFSKLSQIEELVKLLQDMKSEG-TKLDERLY 577 (603)
Q Consensus 524 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g-~~~~~~~~ 577 (603)
.++++...+.+.. +..+|..+..+|...|++++|++.|++.++.| ..|+...|
T Consensus 416 ~~~~~~~l~~~p~-~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~ 469 (472)
T 4g1t_A 416 QKIAKMRLSKNGA-DSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSW 469 (472)
T ss_dssp HHHHHHHHHHCC--CTTHHHHHHHHHHHHHHCC----------------------
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhc
Confidence 5566666655433 56788889999999999999999999988764 23444433
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.7e-15 Score=142.99 Aligned_cols=246 Identities=10% Similarity=0.049 Sum_probs=139.6
Q ss_pred hhcCcHHHHHHHHHHHHhCCCCCC--hhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccCC
Q 007461 197 NKLHMYYSTILVYEKMKSAGIVLD--SGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGR 274 (603)
Q Consensus 197 ~~~~~~~~a~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 274 (603)
...|+++.|+..++..... .|+ ......+.++|...|+++.|...++. ..+++..++..+...+...|+
T Consensus 10 ~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~-------~~~~~~~a~~~la~~~~~~~~ 80 (291)
T 3mkr_A 10 FYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP-------SSAPELQAVRMFAEYLASHSR 80 (291)
T ss_dssp HHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT-------TSCHHHHHHHHHHHHHHCSTT
T ss_pred HHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc-------cCChhHHHHHHHHHHHcCCCc
Confidence 3456666666666554332 222 22444556677777777776654432 123345666667777777777
Q ss_pred HHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 007461 275 AFEALKFFRDMKEKGILED-PSIYASLICSFASITEVKLAEELFKEAEEKGMLRDPEVCLKLVLMYIEEGLVEKTLDVVE 353 (603)
Q Consensus 275 ~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 353 (603)
.++|++.++++...+..|+ ...+..+...+...|++++|.+.++. +.+...+..++..|.+.|++++|.+.|+
T Consensus 81 ~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~ 154 (291)
T 3mkr_A 81 RDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELK 154 (291)
T ss_dssp HHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 7777777777766654453 33444455566666777777666665 3456666666666666666666666666
Q ss_pred HHHhCCCCCCHhhHHH----HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 007461 354 SMKNAKLKISDCISCA----IVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQKG 429 (603)
Q Consensus 354 ~~~~~~~~~~~~~~~~----li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 429 (603)
.+.+.++ +. +... ++..+...|++++|+.+|+++.+.. +.+...++.+..++.+.|++++|...|++..+..
T Consensus 155 ~~~~~~p--~~-~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~ 230 (291)
T 3mkr_A 155 KMQDQDE--DA-TLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD 230 (291)
T ss_dssp HHHHHCT--TC-HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHhhCc--Cc-HHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 6665542 21 1111 1222223355666666666665542 3455555556666666666666666666655553
Q ss_pred CCcCHhhHHHHHHHHHccCCHHH-HHHHHHHHHH
Q 007461 430 FDKCVVAYSSMVAMYGKTGRIRD-AMWLVAKMKA 462 (603)
Q Consensus 430 ~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~ 462 (603)
+.+..++..++..+...|+.++ +.++++++.+
T Consensus 231 -p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~ 263 (291)
T 3mkr_A 231 -SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKD 263 (291)
T ss_dssp -TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred -CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 3455555566666666666544 3455555554
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=4.5e-18 Score=176.52 Aligned_cols=138 Identities=12% Similarity=0.140 Sum_probs=116.6
Q ss_pred CcCHhhHHHHHHHHHccCCHHHHHHHHHHHHH---cCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 007461 431 DKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKA---KGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDKVSY 507 (603)
Q Consensus 431 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~ 507 (603)
..-..+|++||++|++.|++++|.++|++|.+ .|+.||+.|||+||++|++.|++++|.++|++|.+.|+.||..||
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY 203 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY 203 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Confidence 44467899999999999999999999988764 488999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC
Q 007461 508 TTVISAYNRARE-FDMCVKFYNEFRMNGGVIDRAIAGIMVGVFSKLSQIEELVKLLQDMKSEGTKLD 573 (603)
Q Consensus 508 ~~li~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~ 573 (603)
|++|.++++.|+ .++|.++|++|.+.|+.||..+|++++....+. ..++.++++ ..++.|+
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~ 265 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLP 265 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCC
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCC
Confidence 999999999987 478899999999999999999999888655443 445555555 3355554
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.7e-15 Score=142.94 Aligned_cols=251 Identities=12% Similarity=0.027 Sum_probs=166.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcH
Q 007461 125 RYLVQSKKWDSIVSLSEDFKIYNVLPDA--HTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMY 202 (603)
Q Consensus 125 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 202 (603)
+-....|++..|+..++...... |+. .....+.++|...|+++.|+..++. ..+++..++..+...+...++.
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~~--p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~~~~~~~a~~~la~~~~~~~~~ 81 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPSS--PERDVERDVFLYRAYLAQRKYGVVLDEIKP---SSAPELQAVRMFAEYLASHSRR 81 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCS--HHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---TSCHHHHHHHHHHHHHHCSTTH
T ss_pred HHHHHHHHHHHHHHHHHhcccCC--chhhHHHHHHHHHHHHHCCCHHHHHHHhcc---cCChhHHHHHHHHHHHcCCCcH
Confidence 44556778888888777654432 332 3455667778888888777765543 3455677777777888888888
Q ss_pred HHHHHHHHHHHhCCCCC-ChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccCCHHHHHHH
Q 007461 203 YSTILVYEKMKSAGIVL-DSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKF 281 (603)
Q Consensus 203 ~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 281 (603)
++|++.++++...+..| +...+..+...+...|++++|.+.+++ +.+..++..++..+.+.|++++|.+.
T Consensus 82 ~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~---------~~~~~~~~~l~~~~~~~g~~~~A~~~ 152 (291)
T 3mkr_A 82 DAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ---------GDSLECMAMTVQILLKLDRLDLARKE 152 (291)
T ss_dssp HHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT---------CCSHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC---------CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 88888888877765444 445556666778888888888888765 12345777788888888888888888
Q ss_pred HHHHHHCCCCCCHHHH---HHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 007461 282 FRDMKEKGILEDPSIY---ASLICSFASITEVKLAEELFKEAEEKGMLRDPEVCLKLVLMYIEEGLVEKTLDVVESMKNA 358 (603)
Q Consensus 282 ~~~m~~~g~~p~~~~~---~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 358 (603)
|+++.+. .|+.... ...+..+...|++++|..+++++.+.. +.++.+++.+..++.+.|++++|.+.|++..+.
T Consensus 153 l~~~~~~--~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~ 229 (291)
T 3mkr_A 153 LKKMQDQ--DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDK 229 (291)
T ss_dssp HHHHHHH--CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhh--CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 8888765 3443211 122233344567777777777777663 346677777777777777777777777776666
Q ss_pred CCCCCHhhHHHHHHHHHhcCCHHH-HHHHHHHHHHc
Q 007461 359 KLKISDCISCAIVNGFSKRRGYWA-AVKVYEQLISQ 393 (603)
Q Consensus 359 ~~~~~~~~~~~li~~~~~~~~~~~-a~~~~~~m~~~ 393 (603)
++ -+..++..++..+...|+.++ +.++++++.+.
T Consensus 230 ~p-~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 230 DS-GHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp CT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CC-CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 54 255566666666666666654 45666666654
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=7.7e-15 Score=149.69 Aligned_cols=386 Identities=10% Similarity=-0.070 Sum_probs=244.2
Q ss_pred CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC--------CCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCC--
Q 007461 114 RPEKSTLKLLIRYLVQSKKWDSIVSLSEDFKIY--------NVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGE-- 183 (603)
Q Consensus 114 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-- 183 (603)
......||.|...+...|++++|++.|++..+. ..+....+|..+..+|...|++++|...+++.....+
T Consensus 48 ~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~ 127 (472)
T 4g1t_A 48 EFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKF 127 (472)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhc
Confidence 334567999999999999999999999987643 1133467888999999999999999999988765321
Q ss_pred ------cchhhHHHHHhhhhhc--CcHHHHHHHHHHHHhCCCCCChhhHHHHHHH---HHHcCCHHHHHHHHHHHHhCCC
Q 007461 184 ------IALLAFNSAMGGYNKL--HMYYSTILVYEKMKSAGIVLDSGCYCQIMEA---YYKIGDSEKVAALFLECKSRKL 252 (603)
Q Consensus 184 ------~~~~~~~~l~~~~~~~--~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~---~~~~g~~~~a~~~~~~~~~~~~ 252 (603)
....++..+..++... +++++|++.|++..+.... ++..+..+..+ +...++.++|.+.+++....++
T Consensus 128 ~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~-~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p 206 (472)
T 4g1t_A 128 SSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK-NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNP 206 (472)
T ss_dssp CCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCS
T ss_pred ccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCC
Confidence 2345666666555554 5799999999998886432 45555555544 3456777888888888776654
Q ss_pred CCCCccHHHHHHHHHHHh----ccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCC
Q 007461 253 DSTPFSTHMYKILCDSLG----KSGRAFEALKFFRDMKEKGILEDPSIYASLICSFASITEVKLAEELFKEAEEKGMLRD 328 (603)
Q Consensus 253 ~~~~~~~~~~~~li~~~~----~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 328 (603)
. +..++..+...+. ..|++++|.+.+++..... +.+...+..+...+...|++++|...++++.+... .+
T Consensus 207 ~----~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~ 280 (472)
T 4g1t_A 207 D----NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIP-NN 280 (472)
T ss_dssp S----CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TC
T ss_pred c----chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCC-Ch
Confidence 3 2345655554444 3567889999999887763 33667888899999999999999999999988753 36
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 007461 329 PEVCLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINA 408 (603)
Q Consensus 329 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 408 (603)
..++..+...|...+....+ .. ...........+..+.|+..+++..+.. +.+..++..+...
T Consensus 281 ~~~~~~lg~~y~~~~~~~~~---------~~-------~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~ 343 (472)
T 4g1t_A 281 AYLHCQIGCCYRAKVFQVMN---------LR-------ENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASL 343 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHHH---------C-------------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhh---------HH-------HHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHH
Confidence 67777777666432211111 00 0011111122234567788888777654 3344567777888
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCcCHh--hHHHHHH-HHHccCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCH
Q 007461 409 YCRIALYSKAEKVFIEMQQKGFDKCVV--AYSSMVA-MYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNL 485 (603)
Q Consensus 409 ~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~li~-~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 485 (603)
+...|++++|...|++..+....+... .+..+.. .+.+.|+.++|+..|++..+. .|+...... ..
T Consensus 344 ~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i--~~~~~~~~~---------~~ 412 (472)
T 4g1t_A 344 HALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI--NQKSREKEK---------MK 412 (472)
T ss_dssp HHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS--CCCCHHHHH---------HH
T ss_pred HHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHH---------HH
Confidence 888888888888888887764333211 2222222 234678888898888888774 555433222 23
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 007461 486 RQVEKLWKEMERRKVTPDKVSYTTVISAYNRAREFDMCVKFYNEFRMNGG 535 (603)
Q Consensus 486 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 535 (603)
..+.++++..++.. +.+..+|..+..+|...|++++|++.|++.++.+.
T Consensus 413 ~~l~~~~~~~l~~~-p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~ 461 (472)
T 4g1t_A 413 DKLQKIAKMRLSKN-GADSEALHVLAFLQELNEKMQQADEDSERGLESGS 461 (472)
T ss_dssp HHHHHHHHHHHHHC-C-CTTHHHHHHHHHHHHHHCC--------------
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 34455666665443 33567888888899999999999999998887654
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.64 E-value=5.9e-14 Score=141.41 Aligned_cols=346 Identities=9% Similarity=-0.008 Sum_probs=155.5
Q ss_pred HHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcH---HHHHHHHHHHHhCCCCCChhhHHHHHHHHHHc
Q 007461 158 LVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMY---YSTILVYEKMKSAGIVLDSGCYCQIMEAYYKI 234 (603)
Q Consensus 158 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 234 (603)
+...+.+.|++++|.++|++..+.+ +..++..|...|...|+. ++|+..|++..+. ++..+..+...+...
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g--~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~ 82 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG--YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAAK 82 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT--CCTGGGTCC--------------------------------CHHHHHHHHHTC
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHhC
Confidence 4455566677777777777766543 444555566666666666 6777777766643 344555555544444
Q ss_pred C-----CHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccCCHHH---HHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 007461 235 G-----DSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFE---ALKFFRDMKEKGILEDPSIYASLICSFAS 306 (603)
Q Consensus 235 g-----~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~---A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 306 (603)
| +.++|...|++....+... ++..|...|...+..++ +.+.+......| +......+...+..
T Consensus 83 ~~~~~~~~~~A~~~~~~Aa~~g~~~------A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~ 153 (452)
T 3e4b_A 83 PGATEAEHHEAESLLKKAFANGEGN------TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRT 153 (452)
T ss_dssp --CCHHHHHHHHHHHHHHHHTTCSS------CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHH
T ss_pred CCCCCcCHHHHHHHHHHHHHCCCHH------HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHc
Confidence 4 5667777777666654332 45566666655544332 333333333333 23344444444544
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhc----CC
Q 007461 307 ITEVKLAEELFKEAEEKGMLRDPEVCLKLVLMYIEEG---LVEKTLDVVESMKNAKLKISDCISCAIVNGFSKR----RG 379 (603)
Q Consensus 307 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~----~~ 379 (603)
.+.++.+........+.-...++..+..|..+|.+.| +.++|.+.|+...+.+. ++...+..+...|... ++
T Consensus 154 ~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~-~~a~~~~~Lg~~y~~g~~~~~d 232 (452)
T 3e4b_A 154 QGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGT-VTAQRVDSVARVLGDATLGTPD 232 (452)
T ss_dssp HTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-SCHHHHHHHHHHHTCGGGSSCC
T ss_pred CCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCCCCCC
Confidence 4433322222222221111122225555555555566 55566666666555554 2333333444444332 45
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHH-H--HhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccC-----CHH
Q 007461 380 YWAAVKVYEQLISQGCIPGQVTYASIINA-Y--CRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTG-----RIR 451 (603)
Q Consensus 380 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~-~--~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-----~~~ 451 (603)
+++|+..|++.. .| +...+..+... + ...++.++|...|++..+.| +...+..|...|. .| +++
T Consensus 233 ~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~ 304 (452)
T 3e4b_A 233 EKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAK 304 (452)
T ss_dssp HHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHH
T ss_pred HHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHH
Confidence 556666655554 22 22333333333 2 33555556666665555544 3444445554444 23 555
Q ss_pred HHHHHHHHHHHcCCCCCHhHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHH
Q 007461 452 DAMWLVAKMKAKGCEPNVWIYNSLMDMHGR----AKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNR----AREFDMC 523 (603)
Q Consensus 452 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a 523 (603)
+|.+.|++.. . -+...+..|...|.. ..+.++|...|++..+.|. ......|...|.. ..++++|
T Consensus 305 ~A~~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~~~A 377 (452)
T 3e4b_A 305 AAEAHFEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQGKGTKPDPLNA 377 (452)
T ss_dssp HHHHHHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBCCCHHHH
T ss_pred HHHHHHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCCCCHHHH
Confidence 5555555544 2 234444444444443 2255555555555554432 2233344444432 2355555
Q ss_pred HHHHHHHHHCC
Q 007461 524 VKFYNEFRMNG 534 (603)
Q Consensus 524 ~~~~~~~~~~~ 534 (603)
..+|+...+.|
T Consensus 378 ~~~~~~A~~~g 388 (452)
T 3e4b_A 378 YVFSQLAKAQD 388 (452)
T ss_dssp HHHHHHHHTTC
T ss_pred HHHHHHHHHCC
Confidence 55555555544
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.64 E-value=7e-14 Score=140.86 Aligned_cols=346 Identities=8% Similarity=-0.056 Sum_probs=200.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCh---HHHHHHHHHHHhcCCcchhhHHHHHhhhhhc
Q 007461 123 LIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKF---KIANTLLQVFITDGEIALLAFNSAMGGYNKL 199 (603)
Q Consensus 123 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 199 (603)
+...+.+.|++++|.++|+...+.| +..++..|...|...|+. ++|..+|++..+. ++.++..+...+...
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~---~~~A~~~Lg~~~~~~ 82 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT---SPRAQARLGRLLAAK 82 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC-------------------------------CHHHHHHHHHTC
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC---CHHHHHHHHHHHHhC
Confidence 5566677788888888888777665 233344455555566666 7777777777654 556666666644443
Q ss_pred C-----cHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCHHH---HHHHHHHHHhCCCCCCCccHHHHHHHHHHHhc
Q 007461 200 H-----MYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEK---VAALFLECKSRKLDSTPFSTHMYKILCDSLGK 271 (603)
Q Consensus 200 ~-----~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~---a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 271 (603)
+ ++++|+..|++..+.|.. ..+..|...|...+..+. +.+.+......+.. ..+..|...|..
T Consensus 83 ~~~~~~~~~~A~~~~~~Aa~~g~~---~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~------~a~~~Lg~~y~~ 153 (452)
T 3e4b_A 83 PGATEAEHHEAESLLKKAFANGEG---NTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYP------EAGLAQVLLYRT 153 (452)
T ss_dssp --CCHHHHHHHHHHHHHHHHTTCS---SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCT------THHHHHHHHHHH
T ss_pred CCCCCcCHHHHHHHHHHHHHCCCH---HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCH------HHHHHHHHHHHc
Confidence 3 677788888877776532 366677777776665443 33344443333332 356777777777
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC---CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc----CC
Q 007461 272 SGRAFEALKFFRDMKEKGILEDPSIYASLICSFASIT---EVKLAEELFKEAEEKGMLRDPEVCLKLVLMYIEE----GL 344 (603)
Q Consensus 272 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~ 344 (603)
.+.++++.+....+.+.-...+...+..+...+...| +.++|.+.++...+.|. ++...+..|..+|... ++
T Consensus 154 ~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~-~~a~~~~~Lg~~y~~g~~~~~d 232 (452)
T 3e4b_A 154 QGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGT-VTAQRVDSVARVLGDATLGTPD 232 (452)
T ss_dssp HTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-SCHHHHHHHHHHHTCGGGSSCC
T ss_pred CCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCCCCCC
Confidence 7755555554333332222223336667777777777 77778888887777763 3555556666666544 67
Q ss_pred HHHHHHHHHHHHhCCCCCCHhhHHHHHHH-H--HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-----ChH
Q 007461 345 VEKTLDVVESMKNAKLKISDCISCAIVNG-F--SKRRGYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIA-----LYS 416 (603)
Q Consensus 345 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~--~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g-----~~~ 416 (603)
+++|.+.|++.. . -+...+..+... + ...+++++|+..|++..+.| +...+..+...|. .| +++
T Consensus 233 ~~~A~~~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~ 304 (452)
T 3e4b_A 233 EKTAQALLEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAK 304 (452)
T ss_dssp HHHHHHHHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHH
T ss_pred HHHHHHHHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHH
Confidence 788888887776 2 233455555555 3 45777888888888877765 4555666666655 44 778
Q ss_pred HHHHHHHHHHHcCCCcCHhhHHHHHHHHHc----cCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHh----cCCHHHH
Q 007461 417 KAEKVFIEMQQKGFDKCVVAYSSMVAMYGK----TGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGR----AKNLRQV 488 (603)
Q Consensus 417 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a 488 (603)
+|...|++.. .| +...+..|...|.. ..++++|...|++..+.| +......|...|.. ..+.++|
T Consensus 305 ~A~~~~~~Aa-~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~G~g~~~d~~~A 377 (452)
T 3e4b_A 305 AAEAHFEKAV-GR---EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG---QNSADFAIAQLFSQGKGTKPDPLNA 377 (452)
T ss_dssp HHHHHHHTTT-TT---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT---CTTHHHHHHHHHHSCTTBCCCHHHH
T ss_pred HHHHHHHHHh-CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC---hHHHHHHHHHHHHhCCCCCCCHHHH
Confidence 8888877766 33 45666666666665 337788888888777665 33344555555543 4577777
Q ss_pred HHHHHHHHhCC
Q 007461 489 EKLWKEMERRK 499 (603)
Q Consensus 489 ~~~~~~m~~~~ 499 (603)
...|+...+.|
T Consensus 378 ~~~~~~A~~~g 388 (452)
T 3e4b_A 378 YVFSQLAKAQD 388 (452)
T ss_dssp HHHHHHHHTTC
T ss_pred HHHHHHHHHCC
Confidence 77777777665
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.4e-13 Score=127.57 Aligned_cols=93 Identities=11% Similarity=-0.016 Sum_probs=39.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 007461 472 YNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNRAREFDMCVKFYNEFRMNGGVIDRAIAGIMVGVFSK 551 (603)
Q Consensus 472 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 551 (603)
+..+...+...|++++|...++++.+.. +.+...+..+...|...|++++|...++++.+.... +...|..+..++.+
T Consensus 142 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~ 219 (258)
T 3uq3_A 142 ARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATAQIA 219 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHH-HHHHHHHHHHHHHH
Confidence 3334444444444444444444443321 112333444444444444444444444444443211 23344444444444
Q ss_pred cCCHHHHHHHHHHHH
Q 007461 552 LSQIEELVKLLQDMK 566 (603)
Q Consensus 552 ~g~~~~A~~~~~~m~ 566 (603)
.|++++|.+.+++..
T Consensus 220 ~g~~~~A~~~~~~a~ 234 (258)
T 3uq3_A 220 VKEYASALETLDAAR 234 (258)
T ss_dssp TTCHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHH
Confidence 444444444444444
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.4e-13 Score=127.61 Aligned_cols=223 Identities=12% Similarity=0.027 Sum_probs=103.6
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCC--CC----HHHHHH
Q 007461 261 MYKILCDSLGKSGRAFEALKFFRDMKEKGILEDPSIYASLICSFASITEVKLAEELFKEAEEKGML--RD----PEVCLK 334 (603)
Q Consensus 261 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~--~~----~~~~~~ 334 (603)
.|..+...+...|++++|++.|++..+.. .+...+..+...+...|++++|...++.+.+.... ++ ..++..
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 45555555555555555555555555443 44445555555555555555555555554443210 11 344444
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 007461 335 LVLMYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIAL 414 (603)
Q Consensus 335 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 414 (603)
+...|.+.|++++|.+.|++..+.... ...+... |+
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~~~~~---------~~~~~~~-----------------------------------~~ 120 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLTEHRT---------ADILTKL-----------------------------------RN 120 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCC---------HHHHHHH-----------------------------------HH
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCch---------hHHHHHH-----------------------------------hH
Confidence 444555555555555555544443221 1122333 33
Q ss_pred hHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHH
Q 007461 415 YSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKE 494 (603)
Q Consensus 415 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 494 (603)
+++|...++.+.+.. +.+...+..+...+...|++++|...+++..+.. +.+...|..+...|...|++++|...+++
T Consensus 121 ~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 198 (258)
T 3uq3_A 121 AEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNK 198 (258)
T ss_dssp HHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 444444444444332 2233344444444444555555555555444431 22344444455555555555555555555
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007461 495 MERRKVTPDKVSYTTVISAYNRAREFDMCVKFYNEFRM 532 (603)
Q Consensus 495 m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 532 (603)
..+.. +.+...+..+..++...|++++|.+.++++.+
T Consensus 199 al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 235 (258)
T 3uq3_A 199 AIEKD-PNFVRAYIRKATAQIAVKEYASALETLDAART 235 (258)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 44331 11234445555555555555555555555444
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.62 E-value=6.6e-14 Score=126.08 Aligned_cols=198 Identities=14% Similarity=0.059 Sum_probs=115.5
Q ss_pred CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHH
Q 007461 114 RPEKSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAM 193 (603)
Q Consensus 114 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 193 (603)
+++...+..+...+.+.|++++|+..|+...+.. +.+...+..+...+.+.|++++|+..+++..+..|.+..+|..+.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg 80 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLS 80 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 3456667777777777777777777777777665 456677777777777777777777777777777777777777777
Q ss_pred hhhhhc-----------CcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccHHHH
Q 007461 194 GGYNKL-----------HMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMY 262 (603)
Q Consensus 194 ~~~~~~-----------~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 262 (603)
..+... |++++|+..|++..+.... +...+..+..++...|++++|+..|++..+.+ . +...+
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~----~~~~~ 154 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR-YAPLHLQRGLVYALLGERDKAEASLKQALALE-D----TPEIR 154 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-C----CHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-c----chHHH
Confidence 777776 6666666666666554322 44455555666666666666666666655544 1 13455
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 007461 263 KILCDSLGKSGRAFEALKFFRDMKEKGILEDPSIYASLICSFASITEVKLAEELFKE 319 (603)
Q Consensus 263 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 319 (603)
..+...|...|++++|+..|++..+.. +.+...+..+...+...|+.++|...+++
T Consensus 155 ~~la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 210 (217)
T 2pl2_A 155 SALAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAAL 210 (217)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC-------------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 556666666666666666666555432 11344445555555555555555555544
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.62 E-value=4.7e-14 Score=127.05 Aligned_cols=199 Identities=14% Similarity=0.083 Sum_probs=128.6
Q ss_pred CCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHH
Q 007461 149 LPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIM 228 (603)
Q Consensus 149 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll 228 (603)
+++...+..+...+.+.|++++|...|++..+..|.+..+|..+...+.+.|++++|+..|++..+.... +...+..+.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg 80 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPR-YLGGYMVLS 80 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHH
Confidence 4566677777778888888888888888888888888888888888888888888888888888775432 566777777
Q ss_pred HHHHHc-----------CCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHH
Q 007461 229 EAYYKI-----------GDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEKGILEDPSIY 297 (603)
Q Consensus 229 ~~~~~~-----------g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 297 (603)
..+.+. |++++|...|++..+.++. +...|..+...+...|++++|++.|++..+.. .+...+
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~ 154 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR----YAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIR 154 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc----cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHH
Confidence 777777 7777777777766665433 23466666667777777777777777666654 455666
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 007461 298 ASLICSFASITEVKLAEELFKEAEEKGMLRDPEVCLKLVLMYIEEGLVEKTLDVVESM 355 (603)
Q Consensus 298 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 355 (603)
..+..++...|++++|...++.+.+.. +.+...+..+...+.+.|++++|.+.|++.
T Consensus 155 ~~la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 155 SALAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 666666666666666666666666653 224555666666666666666666665544
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.60 E-value=3.8e-11 Score=124.97 Aligned_cols=147 Identities=9% Similarity=0.011 Sum_probs=88.8
Q ss_pred HHHHHHHHhhCCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCC---hHHHHHHHH
Q 007461 100 AYDYYNEAKKLPEFRPEKSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARK---FKIANTLLQ 176 (603)
Q Consensus 100 a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~---~~~a~~~~~ 176 (603)
.+..|+.....+ +-|...|..++..+.+.+.++.+..+|+.+...- +.....|..-+..-.+.++ ++.+..+|+
T Consensus 51 ~i~~lE~~l~~n--p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~f-P~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfe 127 (679)
T 4e6h_A 51 VIGKLNDMIEEQ--PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRF-PLMANIWCMRLSLEFDKMEELDAAVIEPVLA 127 (679)
T ss_dssp HHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTC--CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHC--cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhhCCcchHHHHHHHHH
Confidence 444445444432 4577778888887777777778888888777663 5566677777777667677 777777777
Q ss_pred HHHhcCC--cchhhHHHHHhhhhhcCcH--------HHHHHHHHHHHh-CCC-CCC-hhhHHHHHHHHHH---------c
Q 007461 177 VFITDGE--IALLAFNSAMGGYNKLHMY--------YSTILVYEKMKS-AGI-VLD-SGCYCQIMEAYYK---------I 234 (603)
Q Consensus 177 ~~~~~~~--~~~~~~~~l~~~~~~~~~~--------~~a~~~~~~m~~-~~~-~p~-~~~~~~ll~~~~~---------~ 234 (603)
+.....+ +++..|...+....+.++. +...++|+..+. .|. .++ ...|...+..... .
T Consensus 128 Ral~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq 207 (679)
T 4e6h_A 128 RCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQ 207 (679)
T ss_dssp HHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHH
T ss_pred HHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHH
Confidence 7777653 6666777766655554432 223356665443 344 443 3455555555442 2
Q ss_pred CCHHHHHHHHHHHHh
Q 007461 235 GDSEKVAALFLECKS 249 (603)
Q Consensus 235 g~~~~a~~~~~~~~~ 249 (603)
++++.+..+|+....
T Consensus 208 ~~~~~~R~iy~raL~ 222 (679)
T 4e6h_A 208 QRVQYIRKLYKTLLC 222 (679)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHh
Confidence 345566666666553
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.60 E-value=2.8e-13 Score=132.09 Aligned_cols=247 Identities=9% Similarity=0.023 Sum_probs=190.9
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCC-hHHHHHHHHHHHhcCCcchhhHHHHHhh
Q 007461 117 KSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARK-FKIANTLLQVFITDGEIALLAFNSAMGG 195 (603)
Q Consensus 117 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 195 (603)
...|+.+...+.+.|++++|+..++.+.+.+ +.+..+|..+..++...|+ +++|+..|+++....+.+..+|+.+..+
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~ 175 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 4567778888888999999999999988876 5667888888888888886 9999999999999888899999999999
Q ss_pred hhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhc-cCC
Q 007461 196 YNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGK-SGR 274 (603)
Q Consensus 196 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~ 274 (603)
+...|++++|+..|+++++.+.. +...|..+..++.+.|++++|+..|+++...++. +..+|+.+..++.. .|.
T Consensus 176 ~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~----~~~a~~~lg~~l~~l~~~ 250 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR----NNSVWNQRYFVISNTTGY 250 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCS
T ss_pred HHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHhcCc
Confidence 99999999999999998886543 7778888888999999999999999988887654 35688888888888 566
Q ss_pred HHHH-----HHHHHHHHHCCCCC-CHHHHHHHHHHHHccC--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC---
Q 007461 275 AFEA-----LKFFRDMKEKGILE-DPSIYASLICSFASIT--EVKLAEELFKEAEEKGMLRDPEVCLKLVLMYIEEG--- 343 (603)
Q Consensus 275 ~~~A-----~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--- 343 (603)
.++| ++.|++.+.. .| +...|..+...+...| +.++|.+.+..+ +. .+.+...+..+...|.+.|
T Consensus 251 ~~eA~~~~el~~~~~Al~l--~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~ 326 (382)
T 2h6f_A 251 NDRAVLEREVQYTLEMIKL--VPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQ 326 (382)
T ss_dssp CSHHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTT
T ss_pred chHHHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhccc
Confidence 5777 4778777765 34 5567777777777777 577888877776 32 2446677778888887764
Q ss_pred ------CHHHHHHHHHHH-HhCCCCCCHhhHHHHHHHH
Q 007461 344 ------LVEKTLDVVESM-KNAKLKISDCISCAIVNGF 374 (603)
Q Consensus 344 ------~~~~a~~~~~~~-~~~~~~~~~~~~~~li~~~ 374 (603)
.+++|.++|+++ .+.++ .....|..+...+
T Consensus 327 ~~~~~~~~~~A~~~~~~l~~~~DP-~r~~~w~~~~~~l 363 (382)
T 2h6f_A 327 CDNKEDILNKALELCEILAKEKDT-IRKEYWRYIGRSL 363 (382)
T ss_dssp CSSHHHHHHHHHHHHHHHHHTTCG-GGHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHhCc-hhHHHHHHHHHHH
Confidence 247788888887 55554 2333455444443
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.58 E-value=6.9e-12 Score=117.45 Aligned_cols=224 Identities=12% Similarity=0.038 Sum_probs=133.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 007461 328 DPEVCLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSK----RRGYWAAVKVYEQLISQGCIPGQVTYA 403 (603)
Q Consensus 328 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~ 403 (603)
++..+..+...|...|++++|.+.|++..+.+ +...+..+...+.. .+++++|+..|++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 34445555555555556666665555555522 23345555555555 666666666666655543 445555
Q ss_pred HHHHHHHh----cCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHc----cCCHHHHHHHHHHHHHcCCCCCHhHHHHH
Q 007461 404 SIINAYCR----IALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGK----TGRIRDAMWLVAKMKAKGCEPNVWIYNSL 475 (603)
Q Consensus 404 ~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 475 (603)
.+...|.. .+++++|...|++..+.+ +...+..+...|.+ .+++++|.+.|++..+.+ +...+..+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 152 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence 55555655 666666666666666553 45556666666666 666666666666666543 44555555
Q ss_pred HHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 007461 476 MDMHGR----AKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNR----AREFDMCVKFYNEFRMNGGVIDRAIAGIMVG 547 (603)
Q Consensus 476 i~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 547 (603)
...|.. .+++++|...+++..+.+ +...+..+...|.. .+++++|+..+++..+.+ +...+..+..
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~ 226 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGA 226 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHH
Confidence 566655 666666666666666543 34555666666666 667777777776666653 2445555666
Q ss_pred HHHc----cCCHHHHHHHHHHHHhCC
Q 007461 548 VFSK----LSQIEELVKLLQDMKSEG 569 (603)
Q Consensus 548 ~~~~----~g~~~~A~~~~~~m~~~g 569 (603)
.|.+ .+++++|.+.+++..+.|
T Consensus 227 ~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 227 MQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 6666 666777777776666554
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.57 E-value=2.3e-13 Score=127.64 Aligned_cols=245 Identities=9% Similarity=-0.026 Sum_probs=123.1
Q ss_pred CCHHHHHHHHHHHHhCCCC---CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHH
Q 007461 343 GLVEKTLDVVESMKNAKLK---ISDCISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIALYSKAE 419 (603)
Q Consensus 343 g~~~~a~~~~~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~ 419 (603)
|++++|.+.|+++.+.... .+..++..+...+...|++++|+..|+++.+.. +.+..++..+...+...|++++|.
T Consensus 19 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~ 97 (275)
T 1xnf_A 19 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAY 97 (275)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred chHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHHH
Confidence 3444444444444443210 122334445555555555555555555555443 223455555555555666666666
Q ss_pred HHHHHHHHcCCCcCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 007461 420 KVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEMERRK 499 (603)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 499 (603)
..|++..+.. +.+...+..+...|.+.|++++|...++++.+. .|+.......+..+...|++++|...+++.....
T Consensus 98 ~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 174 (275)
T 1xnf_A 98 EAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS 174 (275)
T ss_dssp HHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 6666555543 334555666666666666666666666666553 3333333333344445566666666665554431
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHH
Q 007461 500 VTPDKVSYTTVISAYNRAREFDMCVKFYNEFRMNGGVI---DRAIAGIMVGVFSKLSQIEELVKLLQDMKSEGTKLDERL 576 (603)
Q Consensus 500 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~ 576 (603)
+++...+ .++..+...++.++|...++++.+..... +...+..+...|.+.|++++|...++++.+. .|+.
T Consensus 175 -~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~-- 248 (275)
T 1xnf_A 175 -DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN--NVHN-- 248 (275)
T ss_dssp -CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CCTT--
T ss_pred -CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--Cchh--
Confidence 2222222 24445555556666666666554432110 1345566666666667777777777666643 2322
Q ss_pred HHHHHHHHHhcCcHHHHHHHH
Q 007461 577 YHSAMNALRDAGLQMQAQWLQ 597 (603)
Q Consensus 577 ~~~ll~a~~~~g~~~~a~~~~ 597 (603)
+.....++...|++++|++.+
T Consensus 249 ~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 249 FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp CHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHhhHHHH
Confidence 222234555566666665543
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.56 E-value=2e-12 Score=119.47 Aligned_cols=198 Identities=10% Similarity=0.067 Sum_probs=110.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHc
Q 007461 367 SCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGK 446 (603)
Q Consensus 367 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 446 (603)
|..+...+...|++++|+..|+++.+.. +.+...+..+...+...|++++|.+.++++.+.. +.+...+..+...|.+
T Consensus 40 ~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~ 117 (252)
T 2ho1_A 40 YIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFLYE 117 (252)
T ss_dssp HHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHH
Confidence 4444444444555555555555544432 2234455555555555566666666655555543 3345555566666666
Q ss_pred cCCHHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 007461 447 TGRIRDAMWLVAKMKAKGCEP-NVWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNRAREFDMCVK 525 (603)
Q Consensus 447 ~g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 525 (603)
.|++++|.+.++++.+.+..| +...+..+...+...|++++|...++++.+.. +.+...+..+...|...|++++|..
T Consensus 118 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~ 196 (252)
T 2ho1_A 118 QKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVPARQ 196 (252)
T ss_dssp TTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHHHH
Confidence 666666666666665522223 34455555666666666666666666665432 1234556666666666666666666
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 007461 526 FYNEFRMNGGVIDRAIAGIMVGVFSKLSQIEELVKLLQDMKSE 568 (603)
Q Consensus 526 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 568 (603)
.++++.+... .+...+..+...+.+.|++++|.+.++++.+.
T Consensus 197 ~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 197 YYDLFAQGGG-QNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHTTSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCc-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 6666665432 24455566666666666666666666666654
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.2e-12 Score=122.46 Aligned_cols=230 Identities=12% Similarity=0.010 Sum_probs=114.0
Q ss_pred HHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCC--hhhHHHHHHHHHHcC
Q 007461 158 LVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLD--SGCYCQIMEAYYKIG 235 (603)
Q Consensus 158 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~g 235 (603)
....+...|++++|+..|+++.+..+.+..++..+...|...|++++|+..+++..+.+..++ ...|..+...+...|
T Consensus 9 ~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~ 88 (272)
T 3u4t_A 9 YADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKG 88 (272)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcc
Confidence 344455555555555555555555555555555555555555555556555555555221111 112555555566666
Q ss_pred CHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 007461 236 DSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEKGILEDPSIYASLICSFASITEVKLAEE 315 (603)
Q Consensus 236 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~ 315 (603)
++++|.+.|++....++.. ..+|..+...|...|++++|++.|++..+.. +.+...+..+...+...+++++|.+
T Consensus 89 ~~~~A~~~~~~a~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~ 163 (272)
T 3u4t_A 89 QDSLAIQQYQAAVDRDTTR----LDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKADS 163 (272)
T ss_dssp CHHHHHHHHHHHHHHSTTC----THHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cHHHHHHHHHHHHhcCccc----HHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666555543321 2355566666666666666666665555441 1133344444412233345666666
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhCC-CCCC------HhhHHHHHHHHHhcCCHHHHHH
Q 007461 316 LFKEAEEKGMLRDPEVCLKLVLMYIEEGL---VEKTLDVVESMKNAK-LKIS------DCISCAIVNGFSKRRGYWAAVK 385 (603)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~-~~~~------~~~~~~li~~~~~~~~~~~a~~ 385 (603)
.++.+.+... .+...+..+...+...|+ +++|...+++..+.. ..|+ ..+|..+...|...|++++|+.
T Consensus 164 ~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 242 (272)
T 3u4t_A 164 SFVKVLELKP-NIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADA 242 (272)
T ss_dssp HHHHHHHHST-TCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHhCc-cchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 6665555431 234445555555555555 555555555443321 0011 1234444445555555555555
Q ss_pred HHHHHHHc
Q 007461 386 VYEQLISQ 393 (603)
Q Consensus 386 ~~~~m~~~ 393 (603)
.|++..+.
T Consensus 243 ~~~~al~~ 250 (272)
T 3u4t_A 243 AWKNILAL 250 (272)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhc
Confidence 55554443
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.5e-12 Score=121.89 Aligned_cols=245 Identities=9% Similarity=0.023 Sum_probs=174.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHH
Q 007461 331 VCLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPG--QVTYASIINA 408 (603)
Q Consensus 331 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~ll~~ 408 (603)
.+......+...|++++|...|++..+.++. +...+..+...+...|++++|+..+++..+.+..++ ...|..+...
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKYN-SPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI 83 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCC-CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 3445566777778888888888877776553 444677777788888888888888888776331121 2347778888
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHH
Q 007461 409 YCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQV 488 (603)
Q Consensus 409 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a 488 (603)
+...|++++|...|++..+.. +.+...+..+...|.+.|++++|...+++..+. .+.+...|..+...+...+++++|
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~l~~~~~~~~~~~~A 161 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP-TTTDPKVFYELGQAYYYNKEYVKA 161 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS-SCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc-CCCcHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888888764 456678888888888889999999888888775 233566666666344445588999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCC-CCC------HHHHHHHHHHHHccCCHHHH
Q 007461 489 EKLWKEMERRKVTPDKVSYTTVISAYNRARE---FDMCVKFYNEFRMNGG-VID------RAIAGIMVGVFSKLSQIEEL 558 (603)
Q Consensus 489 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~~~-~~~------~~~~~~l~~~~~~~g~~~~A 558 (603)
.+.++++.+.. +.+...+..+..++...|+ +++|...++++.+... .|+ ...|..+...|.+.|++++|
T Consensus 162 ~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 240 (272)
T 3u4t_A 162 DSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKA 240 (272)
T ss_dssp HHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHH
Confidence 99998887643 2235667777777877777 7788888888765421 122 14677788888889999999
Q ss_pred HHHHHHHHhCCCCCC-HHHHHHHH
Q 007461 559 VKLLQDMKSEGTKLD-ERLYHSAM 581 (603)
Q Consensus 559 ~~~~~~m~~~g~~~~-~~~~~~ll 581 (603)
.+.++++.+. .|+ ...+..+.
T Consensus 241 ~~~~~~al~~--~p~~~~a~~~l~ 262 (272)
T 3u4t_A 241 DAAWKNILAL--DPTNKKAIDGLK 262 (272)
T ss_dssp HHHHHHHHHH--CTTCHHHHHHHC
T ss_pred HHHHHHHHhc--CccHHHHHHHhh
Confidence 9999988875 344 44444433
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.55 E-value=2.3e-13 Score=127.58 Aligned_cols=216 Identities=6% Similarity=-0.159 Sum_probs=145.2
Q ss_pred HHHHHHHHHhhCCCCC--CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHH
Q 007461 99 LAYDYYNEAKKLPEFR--PEKSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQ 176 (603)
Q Consensus 99 ~a~~~~~~~~~~~~~~--p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 176 (603)
.|+..|+.+.+..... .+...+..+...+...|++++|+..++++.+.+ +.+..++..+...+...|++++|...++
T Consensus 23 ~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~ 101 (275)
T 1xnf_A 23 VILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFD 101 (275)
T ss_dssp HHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 4888888887652211 245667888888888888888888888888775 5567888888888888888888888888
Q ss_pred HHHhcCCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCC
Q 007461 177 VFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTP 256 (603)
Q Consensus 177 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 256 (603)
++....+.+..+|..+...|...|++++|...|+++.+. .|+.......+..+...|++++|...++..........
T Consensus 102 ~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~- 178 (275)
T 1xnf_A 102 SVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQ- 178 (275)
T ss_dssp HHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCS-
T ss_pred HHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcch-
Confidence 888877777888888888888888888888888888774 34444444455555667888888888876665543321
Q ss_pred ccHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 007461 257 FSTHMYKILCDSLGKSGRAFEALKFFRDMKEKGILE---DPSIYASLICSFASITEVKLAEELFKEAEE 322 (603)
Q Consensus 257 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 322 (603)
..+ .++..+...++.++|++.+++........ +...+..+...+...|++++|...++.+.+
T Consensus 179 ---~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 243 (275)
T 1xnf_A 179 ---WGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVA 243 (275)
T ss_dssp ---THH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred ---HHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 223 36666677777777777777765431110 023334444444444444444444444443
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.55 E-value=3.3e-12 Score=115.52 Aligned_cols=200 Identities=9% Similarity=0.057 Sum_probs=120.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHH
Q 007461 366 ISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYG 445 (603)
Q Consensus 366 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 445 (603)
.+..+...+...|++++|+..++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...|.
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~ 87 (225)
T 2vq2_A 10 IKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFLC 87 (225)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHHH
Confidence 34455555555555555555555555432 2334555556666666666666666666665553 344556666666666
Q ss_pred cc-CCHHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 007461 446 KT-GRIRDAMWLVAKMKAKGCEP-NVWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNRAREFDMC 523 (603)
Q Consensus 446 ~~-g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a 523 (603)
.. |++++|...++++.+.+..| +...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A 166 (225)
T 2vq2_A 88 GRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLGDA 166 (225)
T ss_dssp TTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHHHH
Confidence 66 77777777776666522222 24556666666677777777777777666532 22355666666777777777777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 007461 524 VKFYNEFRMNGGVIDRAIAGIMVGVFSKLSQIEELVKLLQDMKSE 568 (603)
Q Consensus 524 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 568 (603)
.+.++++.+.....+...+..+...+...|+.++|..+++.+.+.
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 167 DYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 777777666543135555666666666777777777777766543
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.55 E-value=2.7e-12 Score=118.61 Aligned_cols=198 Identities=9% Similarity=-0.022 Sum_probs=93.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhh
Q 007461 119 TLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNK 198 (603)
Q Consensus 119 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 198 (603)
.|..+...+...|++++|+..++++.+.. +.+..++..+...+...|++++|.+.++++....+.+..++..+...|..
T Consensus 39 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~ 117 (252)
T 2ho1_A 39 AYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYE 117 (252)
T ss_dssp HHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHH
Confidence 34444455555555555555555554443 33444555555555555555555555555554444444455555555555
Q ss_pred cCcHHHHHHHHHHHHhCCCCC-ChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccCCHHH
Q 007461 199 LHMYYSTILVYEKMKSAGIVL-DSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFE 277 (603)
Q Consensus 199 ~~~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 277 (603)
.|++++|++.++++.+.+..| +...+..+...+...|++++|.+.|++.....+. +..++..+...+...|++++
T Consensus 118 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 118 QKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRN----QPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp TTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC----CHHHHHHHHHHHHHTTCHHH
T ss_pred HhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcc----cHHHHHHHHHHHHHcCCHHH
Confidence 555555555555554421122 2334444444555555555555555544443321 12344444555555555555
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 007461 278 ALKFFRDMKEKGILEDPSIYASLICSFASITEVKLAEELFKEAEE 322 (603)
Q Consensus 278 A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 322 (603)
|.+.++++.+.. ..+...+..+...+...|+.++|.+.++.+.+
T Consensus 194 A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 237 (252)
T 2ho1_A 194 ARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKR 237 (252)
T ss_dssp HHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 555555444331 12333344444444444444444444444444
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.55 E-value=2.2e-11 Score=114.01 Aligned_cols=218 Identities=12% Similarity=0.066 Sum_probs=122.6
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 007461 299 SLICSFASITEVKLAEELFKEAEEKGMLRDPEVCLKLVLMYIE----EGLVEKTLDVVESMKNAKLKISDCISCAIVNGF 374 (603)
Q Consensus 299 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 374 (603)
.+...+...|++++|.+.+++..+. .+...+..+...|.. .+++++|.+.|++..+.+ +...+..+...|
T Consensus 11 ~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~ 84 (273)
T 1ouv_A 11 GLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLGNLY 84 (273)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHH
Confidence 3333333444444444444444331 133334444444444 444555555444444443 333444455555
Q ss_pred Hh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHc
Q 007461 375 SK----RRGYWAAVKVYEQLISQGCIPGQVTYASIINAYCR----IALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGK 446 (603)
Q Consensus 375 ~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 446 (603)
.. .+++++|+..|++..+.+ +...+..+...|.. .+++++|...|++..+.+ +...+..+...|..
T Consensus 85 ~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~ 158 (273)
T 1ouv_A 85 YSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSLYDA 158 (273)
T ss_dssp HHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHH
T ss_pred hCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHc
Confidence 55 555555555555555543 44555555555555 666666666666666554 34455556666665
Q ss_pred ----cCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh--
Q 007461 447 ----TGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGR----AKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNR-- 516 (603)
Q Consensus 447 ----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~-- 516 (603)
.+++++|...|++..+.+ +...+..+...|.. .+++++|...+++..+.+ +...+..+...|..
T Consensus 159 ~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~~~~~g~ 232 (273)
T 1ouv_A 159 GRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAMQYNGE 232 (273)
T ss_dssp TSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTS
T ss_pred CCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCC
Confidence 667777777777766643 45556666666666 777777777777776653 24556666667776
Q ss_pred --cCCHHHHHHHHHHHHHCC
Q 007461 517 --AREFDMCVKFYNEFRMNG 534 (603)
Q Consensus 517 --~g~~~~a~~~~~~~~~~~ 534 (603)
.+++++|.+.+++..+.+
T Consensus 233 ~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 233 GVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp SSSCCSTTHHHHHHHHHHHT
T ss_pred CcccCHHHHHHHHHHHHHcC
Confidence 777777777777776654
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.55 E-value=6.6e-10 Score=115.69 Aligned_cols=425 Identities=10% Similarity=0.031 Sum_probs=257.3
Q ss_pred hchhHHHHHHhcCCCChHHHHHHHHHHhhCCCCCCCHHhHHHHHHHHHhcCC---HHHHHHHHHHHHhCC-CCCCHHHHH
Q 007461 81 KKFDSFLHGMLKDPQTQELAYDYYNEAKKLPEFRPEKSTLKLLIRYLVQSKK---WDSIVSLSEDFKIYN-VLPDAHTCS 156 (603)
Q Consensus 81 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~-~~~~~~~~~ 156 (603)
..|..++..+.+.+.... +..+|+.+... ++.+...|..-+..-.+.++ .+.+..+|+...... .+|+...|.
T Consensus 67 ~~W~~yi~~~~~~~~~~~-aR~vyEraL~~--fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW~ 143 (679)
T 4e6h_A 67 FLYVKLLKHHVSLKQWKQ-VYETFDKLHDR--FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLWL 143 (679)
T ss_dssp HHHHHHHHHHHHTTCHHH-HHHHHHHHHHH--CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHHH
T ss_pred HHHHHHHHHHHhcCcHHH-HHHHHHHHHHH--CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHHH
Confidence 448888888777766654 99999999875 46778889998888888888 999999999988664 248888888
Q ss_pred HHHHHHHccCCh--------HHHHHHHHHHHhc----CCcchhhHHHHHhhhhh---------cCcHHHHHHHHHHHHhC
Q 007461 157 RLVASCVRARKF--------KIANTLLQVFITD----GEIALLAFNSAMGGYNK---------LHMYYSTILVYEKMKSA 215 (603)
Q Consensus 157 ~ll~~~~~~~~~--------~~a~~~~~~~~~~----~~~~~~~~~~l~~~~~~---------~~~~~~a~~~~~~m~~~ 215 (603)
.-+....+.++. +...++|+..... .+.....|...+..... .++++.+..+|++.+..
T Consensus 144 ~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~i 223 (679)
T 4e6h_A 144 SYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQ 223 (679)
T ss_dssp HHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHhC
Confidence 877766655543 3345777776542 23355688888766442 34567788889888853
Q ss_pred CCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHH--CCCC--
Q 007461 216 GIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKE--KGIL-- 291 (603)
Q Consensus 216 ~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~g~~-- 291 (603)
....-..+|......--..+. ..+.+++.+. ...++.|...+.++.. .++.
T Consensus 224 P~~~~~~~w~~Y~~fe~~~~~-~~a~~~~~e~------------------------~~~y~~Ar~~~~e~~~~~~~l~r~ 278 (679)
T 4e6h_A 224 PMDCLESMWQRYTQWEQDVNQ-LTARRHIGEL------------------------SAQYMNARSLYQDWLNITKGLKRN 278 (679)
T ss_dssp CCSSHHHHHHHHHHHHHHHCT-TTHHHHHHHH------------------------HHHHHHHHHHHHHHHHHTTTCCCC
T ss_pred ccHHHHHHHHHHHHHHHhcCc-chHHHHHHHh------------------------hHHHHHHHHHHHHHHHHHHhHhhc
Confidence 211111222222211111110 0111111110 1123333333333221 0110
Q ss_pred -------------C-----C---HHHHHHHHHHHHccC-------CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 007461 292 -------------E-----D---PSIYASLICSFASIT-------EVKLAEELFKEAEEKGMLRDPEVCLKLVLMYIEEG 343 (603)
Q Consensus 292 -------------p-----~---~~~~~~ll~~~~~~g-------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 343 (603)
| + ...|...+.---..+ ..+.+..+|++++... +.+..+|...+..+.+.|
T Consensus 279 ~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~ 357 (679)
T 4e6h_A 279 LPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKN 357 (679)
T ss_dssp CCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHS
T ss_pred cccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcC
Confidence 1 0 122333333222221 1234556677776653 347777877777777888
Q ss_pred CHHHHH-HHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC---------CCC------------HHH
Q 007461 344 LVEKTL-DVVESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLISQGC---------IPG------------QVT 401 (603)
Q Consensus 344 ~~~~a~-~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~---------~p~------------~~~ 401 (603)
+.++|. ++|+......+ .+...|-..+....+.|++++|..+|+++..... .|+ ...
T Consensus 358 ~~~~a~r~il~rAi~~~P-~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~v 436 (679)
T 4e6h_A 358 TDSTVITKYLKLGQQCIP-NSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYV 436 (679)
T ss_dssp CCTTHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHH
Confidence 888886 88888776443 3555566677777778888888888887765310 131 234
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHcc-CCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHH
Q 007461 402 YASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKT-GRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHG 480 (603)
Q Consensus 402 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 480 (603)
|...+....+.|..+.|..+|....+.........|...+..-.+. ++.+.|.++|+...+. ++-+...|...++...
T Consensus 437 Wi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~ 515 (679)
T 4e6h_A 437 YCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLI 515 (679)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHH
Confidence 6666666677788888888888887651122233443333333344 4478888888888776 4446666677777777
Q ss_pred hcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 007461 481 RAKNLRQVEKLWKEMERRKVTP--DKVSYTTVISAYNRAREFDMCVKFYNEFRMNGGV 536 (603)
Q Consensus 481 ~~g~~~~a~~~~~~m~~~~~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 536 (603)
..|+.+.|..+|++.+.....+ ....|...+..-...|+.+.+..+.+++.+..+.
T Consensus 516 ~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~ 573 (679)
T 4e6h_A 516 YVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPE 573 (679)
T ss_dssp HHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTT
T ss_pred hCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 7888888888888887653222 2245777777777788888888888888776433
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.54 E-value=3.5e-12 Score=115.35 Aligned_cols=97 Identities=6% Similarity=-0.125 Sum_probs=44.1
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhh
Q 007461 117 KSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGY 196 (603)
Q Consensus 117 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 196 (603)
...+..+...+...|++++|+..++.+.+.. +.+...+..+...+...|++++|...++++....+.+..++..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~ 86 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFL 86 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 3344444444555555555555555444433 233444444444444444444444444444444443444444444444
Q ss_pred hhc-CcHHHHHHHHHHHHh
Q 007461 197 NKL-HMYYSTILVYEKMKS 214 (603)
Q Consensus 197 ~~~-~~~~~a~~~~~~m~~ 214 (603)
... |++++|...++++.+
T Consensus 87 ~~~~~~~~~A~~~~~~~~~ 105 (225)
T 2vq2_A 87 CGRLNRPAESMAYFDKALA 105 (225)
T ss_dssp HTTTCCHHHHHHHHHHHHT
T ss_pred HHhcCcHHHHHHHHHHHHc
Confidence 444 444444444444443
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.54 E-value=1.4e-12 Score=127.18 Aligned_cols=230 Identities=9% Similarity=-0.008 Sum_probs=183.5
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCc-HHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 007461 152 AHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHM-YYSTILVYEKMKSAGIVLDSGCYCQIMEA 230 (603)
Q Consensus 152 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 230 (603)
..+|..+...+...|++++|+..++++....+.+..+|+.+...+...|+ +++|+..|++.++.... +...|..+..+
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g~~ 175 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHH
Confidence 46677788888899999999999999999999999999999999999997 99999999999987544 77889999999
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc-cCC
Q 007461 231 YYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEKGILEDPSIYASLICSFAS-ITE 309 (603)
Q Consensus 231 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~-~g~ 309 (603)
+...|++++|+..|+++...++. +..+|..+..++.+.|++++|++.|+++++... -+...|+.+..++.. .|.
T Consensus 176 ~~~~g~~~eAl~~~~kal~ldP~----~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P-~~~~a~~~lg~~l~~l~~~ 250 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQDAK----NYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDV-RNNSVWNQRYFVISNTTGY 250 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHCTT----CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCS
T ss_pred HHHccCHHHHHHHHHHHHHhCcc----CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCc
Confidence 99999999999999999887654 357899999999999999999999999988632 266788888888887 555
Q ss_pred HHHH-----HHHHHHHHHcCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcC----
Q 007461 310 VKLA-----EELFKEAEEKGMLRDPEVCLKLVLMYIEEG--LVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRR---- 378 (603)
Q Consensus 310 ~~~a-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~---- 378 (603)
.++| .+.++.+++.. +-+...|..+...+.+.| ++++|.+.+..+ +.++ .+...+..+...|.+.|
T Consensus 251 ~~eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p-~~~~al~~La~~~~~~~~~~~ 327 (382)
T 2h6f_A 251 NDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSH-SSPYLIAFLVDIYEDMLENQC 327 (382)
T ss_dssp CSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTC-CCHHHHHHHHHHHHHHHHTTC
T ss_pred chHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCC-CCHHHHHHHHHHHHHHhcccc
Confidence 4666 47777777765 236777777777777777 577888777777 3333 34556667777776653
Q ss_pred -----CHHHHHHHHHHH
Q 007461 379 -----GYWAAVKVYEQL 390 (603)
Q Consensus 379 -----~~~~a~~~~~~m 390 (603)
..++|+++|+++
T Consensus 328 ~~~~~~~~~A~~~~~~l 344 (382)
T 2h6f_A 328 DNKEDILNKALELCEIL 344 (382)
T ss_dssp SSHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHH
Confidence 246777777776
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.53 E-value=1.2e-12 Score=120.04 Aligned_cols=197 Identities=10% Similarity=0.026 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 007461 331 VCLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINAYC 410 (603)
Q Consensus 331 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 410 (603)
.+..+...+...|++++|...|+++.+..+ .+...+..+...+...|++++|+..++++.+.. +.+...+..+...+.
T Consensus 25 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~ 102 (243)
T 2q7f_A 25 TGGQQMGRGSEFGDYEKAAEAFTKAIEENK-EDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNVYV 102 (243)
T ss_dssp -----------------CCTTHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHHHH
Confidence 344444444555555555555555544333 133344444444444444444444444444332 123344444444444
Q ss_pred hcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHH
Q 007461 411 RIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEK 490 (603)
Q Consensus 411 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 490 (603)
..|++++|...++++.+.. +.+...+..+...+.+.|++++|...++++.+.. +.+...+..+...+...|++++|..
T Consensus 103 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~ 180 (243)
T 2q7f_A 103 VKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEALS 180 (243)
T ss_dssp HTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHH
T ss_pred HhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHHHH
Confidence 4444444444444444432 2333444444444444444444444444444331 2233344444444444444444444
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007461 491 LWKEMERRKVTPDKVSYTTVISAYNRAREFDMCVKFYNEFRM 532 (603)
Q Consensus 491 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 532 (603)
.++++.+.. +.+..++..+..+|...|++++|.+.++++.+
T Consensus 181 ~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 221 (243)
T 2q7f_A 181 QFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAID 221 (243)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHc
Confidence 444443321 11233344444444444444444444444443
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.52 E-value=1e-12 Score=120.66 Aligned_cols=211 Identities=9% Similarity=0.025 Sum_probs=163.2
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHH
Q 007461 363 SDCISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVA 442 (603)
Q Consensus 363 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 442 (603)
....|..+...+...|++++|+..|+++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+..
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 99 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGN 99 (243)
T ss_dssp --------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHH
Confidence 44567788888999999999999999998754 4567888889999999999999999999998875 557889999999
Q ss_pred HHHccCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 007461 443 MYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNRAREFDM 522 (603)
Q Consensus 443 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 522 (603)
.|...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 177 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDE 177 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHH
Confidence 9999999999999999998863 4577889999999999999999999999998653 3367788999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 007461 523 CVKFYNEFRMNGGVIDRAIAGIMVGVFSKLSQIEELVKLLQDMKSEGTKLDERLYHS 579 (603)
Q Consensus 523 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ 579 (603)
|.+.++++.+.... +...+..+..+|.+.|++++|.+.++++.+.. +.+...+..
T Consensus 178 A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~ 232 (243)
T 2q7f_A 178 ALSQFAAVTEQDPG-HADAFYNAGVTYAYKENREKALEMLDKAIDIQ-PDHMLALHA 232 (243)
T ss_dssp HHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HHHHHHHHHHhCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHccC-cchHHHHHH
Confidence 99999999886433 67789999999999999999999999998763 223444443
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.1e-12 Score=131.11 Aligned_cols=235 Identities=11% Similarity=0.029 Sum_probs=128.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHccCChHHHHHHHHHHHhc------CCcchhhH
Q 007461 120 LKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDA----HTCSRLVASCVRARKFKIANTLLQVFITD------GEIALLAF 189 (603)
Q Consensus 120 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~ 189 (603)
+..+...+...|++++|+..|+++.+.+ +.+. .++..+...+...|++++|...+++.... .+....++
T Consensus 51 l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 129 (411)
T 4a1s_A 51 LALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSS 129 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHH
Confidence 3445555666666777777666666553 2222 35555666666666666666666665543 12345566
Q ss_pred HHHHhhhhhcCcHHHHHHHHHHHHhC----C-CCCChhhHHHHHHHHHHcCC-----------------HHHHHHHHHHH
Q 007461 190 NSAMGGYNKLHMYYSTILVYEKMKSA----G-IVLDSGCYCQIMEAYYKIGD-----------------SEKVAALFLEC 247 (603)
Q Consensus 190 ~~l~~~~~~~~~~~~a~~~~~~m~~~----~-~~p~~~~~~~ll~~~~~~g~-----------------~~~a~~~~~~~ 247 (603)
..+...|...|++++|...+++..+. + ......++..+...|...|+ +++|.+.+++.
T Consensus 130 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~a 209 (411)
T 4a1s_A 130 GNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQEN 209 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHH
Confidence 66666666777777777666665442 1 01123355666666677777 66666666554
Q ss_pred HhCC--CCCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHccCCHHHHHHHHHHH
Q 007461 248 KSRK--LDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEKGIL-ED----PSIYASLICSFASITEVKLAEELFKEA 320 (603)
Q Consensus 248 ~~~~--~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~ 320 (603)
.... ....+....++..+...|...|++++|++.+++..+.... ++ ...+..+...+...|++++|...++++
T Consensus 210 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 289 (411)
T 4a1s_A 210 LKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRT 289 (411)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 3211 0000112345667777777777777777777766543100 01 124555556666666666666666655
Q ss_pred HHcCCC-C----CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 007461 321 EEKGML-R----DPEVCLKLVLMYIEEGLVEKTLDVVESM 355 (603)
Q Consensus 321 ~~~~~~-~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 355 (603)
.+.... . ...++..+...|...|++++|.+.+++.
T Consensus 290 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 329 (411)
T 4a1s_A 290 LALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRH 329 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 543110 0 1234444555555555555555555544
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.47 E-value=3.3e-12 Score=127.18 Aligned_cols=206 Identities=15% Similarity=0.050 Sum_probs=125.2
Q ss_pred CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHccCChHHHHHHHHHHHhcC------Cc
Q 007461 115 PEKSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPD----AHTCSRLVASCVRARKFKIANTLLQVFITDG------EI 184 (603)
Q Consensus 115 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~------~~ 184 (603)
.....+......+...|++++|+..++++.+.+ +.+ ..++..+...+...|++++|...+++..... +.
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 85 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG 85 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence 445566677777888888888888888887764 233 3466777777888888888888877765431 12
Q ss_pred chhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCC-CC----hhhHHHHHHHHHHcCC--------------------HHH
Q 007461 185 ALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIV-LD----SGCYCQIMEAYYKIGD--------------------SEK 239 (603)
Q Consensus 185 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-p~----~~~~~~ll~~~~~~g~--------------------~~~ 239 (603)
...++..+...|...|++++|+..+++..+.... ++ ..++..+...|...|+ +++
T Consensus 86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~ 165 (406)
T 3sf4_A 86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQA 165 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHH
Confidence 3566777777888888888888877766543100 11 3356667777777777 777
Q ss_pred HHHHHHHHHhCC--CCCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHccCCHHH
Q 007461 240 VAALFLECKSRK--LDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEKGI-LED----PSIYASLICSFASITEVKL 312 (603)
Q Consensus 240 a~~~~~~~~~~~--~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~~~~~ll~~~~~~g~~~~ 312 (603)
|...+++..... ....+....++..+...+...|++++|++.+++..+... .++ ..++..+...+...|++++
T Consensus 166 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 245 (406)
T 3sf4_A 166 AVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFET 245 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHH
Confidence 777766543321 011111234566666677777777777777666643200 011 1244445555555555555
Q ss_pred HHHHHHHHH
Q 007461 313 AEELFKEAE 321 (603)
Q Consensus 313 a~~~~~~~~ 321 (603)
|...+++..
T Consensus 246 A~~~~~~al 254 (406)
T 3sf4_A 246 ASEYYKKTL 254 (406)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555555544
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.47 E-value=2.1e-12 Score=128.62 Aligned_cols=305 Identities=13% Similarity=0.004 Sum_probs=167.5
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHC----CCCC-CH
Q 007461 220 DSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEK----GILE-DP 294 (603)
Q Consensus 220 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~ 294 (603)
....+......+...|++++|...|++.....+.....-..+|..+...+...|++++|+..+++.... +-.| ..
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 87 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 87 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHH
Confidence 344455556666666666666666666665533211111235566666666666666666666655322 1111 12
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 007461 295 SIYASLICSFASITEVKLAEELFKEAEEKGM-LRDPEVCLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVNG 373 (603)
Q Consensus 295 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 373 (603)
.++..+...+...|++++|...++++.+... ..+ ......++..+...
T Consensus 88 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-------------------------------~~~~~~~~~~l~~~ 136 (406)
T 3sf4_A 88 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELND-------------------------------KVGEARALYNLGNV 136 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC-------------------------------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccc-------------------------------ccchHHHHHHHHHH
Confidence 2344444445555555555555554443210 001 00011234444455
Q ss_pred HHhcCC--------------------HHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 007461 374 FSKRRG--------------------YWAAVKVYEQLISQ----GCIP-GQVTYASIINAYCRIALYSKAEKVFIEMQQK 428 (603)
Q Consensus 374 ~~~~~~--------------------~~~a~~~~~~m~~~----g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 428 (603)
+...|+ +++|+..+++.... +..+ ...++..+...+...|++++|...+++..+.
T Consensus 137 ~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 216 (406)
T 3sf4_A 137 YHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLI 216 (406)
T ss_dssp HHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHH
T ss_pred HHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 555555 55555555543321 1011 1235566666777777777777777776543
Q ss_pred C----C-CcCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCC-CCC----HhHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 007461 429 G----F-DKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGC-EPN----VWIYNSLMDMHGRAKNLRQVEKLWKEMERR 498 (603)
Q Consensus 429 ~----~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 498 (603)
. . ......+..+...|...|++++|...+++..+..- .++ ..++..+...|...|++++|...+++..+.
T Consensus 217 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 296 (406)
T 3sf4_A 217 AKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI 296 (406)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 1 0 01123677777788888888888888877654200 011 456677777888888888888888776542
Q ss_pred CC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHccCCH
Q 007461 499 KV-TPD----KVSYTTVISAYNRAREFDMCVKFYNEFRMN----GGVI-DRAIAGIMVGVFSKLSQI 555 (603)
Q Consensus 499 ~~-~p~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~ 555 (603)
.. .++ ..++..+...|...|++++|.+.+++..+. +..+ ...++..+...+...|+.
T Consensus 297 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 297 AQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence 11 011 345777777888888888888888876543 1111 123455666666666654
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.47 E-value=2.2e-12 Score=124.60 Aligned_cols=278 Identities=14% Similarity=0.036 Sum_probs=147.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHccCChHHHHHHHHHHHhc------CCcchhh
Q 007461 119 TLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPD----AHTCSRLVASCVRARKFKIANTLLQVFITD------GEIALLA 188 (603)
Q Consensus 119 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~ 188 (603)
.+......+...|++++|+.+++++.+.. +.+ ...+..+...+...|++++|...+++.... .+....+
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 85 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 85 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 44455666777888888888888877764 223 356667777777788888887777765543 1123556
Q ss_pred HHHHHhhhhhcCcHHHHHHHHHHHHhCCCC-CC----hhhHHHHHHHHHHcCC--------------------HHHHHHH
Q 007461 189 FNSAMGGYNKLHMYYSTILVYEKMKSAGIV-LD----SGCYCQIMEAYYKIGD--------------------SEKVAAL 243 (603)
Q Consensus 189 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-p~----~~~~~~ll~~~~~~g~--------------------~~~a~~~ 243 (603)
+..+...+...|++++|...+++..+.... ++ ..++..+...+...|+ +++|.+.
T Consensus 86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 165 (338)
T 3ro2_A 86 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDL 165 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHH
Confidence 677777777777777777777765542110 11 2355666666667777 6666666
Q ss_pred HHHHHhCC--CCCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHCC----CCC-CHHHHHHHHHHHHccCCHHHHHHH
Q 007461 244 FLECKSRK--LDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEKG----ILE-DPSIYASLICSFASITEVKLAEEL 316 (603)
Q Consensus 244 ~~~~~~~~--~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g----~~p-~~~~~~~ll~~~~~~g~~~~a~~~ 316 (603)
+++..... ....+....++..+...+...|++++|.+.+++..+.. ..+ ...++..+...+...|++++|...
T Consensus 166 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 245 (338)
T 3ro2_A 166 YEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEY 245 (338)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 65543210 00001112345566666666666666666666554320 000 012344444444455555555555
Q ss_pred HHHHHHcCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc--
Q 007461 317 FKEAEEKGML-RDPEVCLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLISQ-- 393 (603)
Q Consensus 317 ~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-- 393 (603)
+++..+.... .+. .....++..+...+...|++++|...+++....
T Consensus 246 ~~~al~~~~~~~~~-------------------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 294 (338)
T 3ro2_A 246 YKKTLLLARQLKDR-------------------------------AVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQ 294 (338)
T ss_dssp HHHHHHHHHHTTCH-------------------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcch-------------------------------hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 5444332100 010 000223444445555555555555555544331
Q ss_pred --CCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 007461 394 --GCI-PGQVTYASIINAYCRIALYSKAEKVFIEMQQK 428 (603)
Q Consensus 394 --g~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 428 (603)
+.. ....++..+...+...|++++|...+++..+.
T Consensus 295 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 295 ELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred hcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 100 01234555566666666666666666666543
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.5e-12 Score=129.94 Aligned_cols=132 Identities=12% Similarity=-0.022 Sum_probs=65.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCC---C--cCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcC--CC---CCHh
Q 007461 401 TYASIINAYCRIALYSKAEKVFIEMQQKGF---D--KCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKG--CE---PNVW 470 (603)
Q Consensus 401 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~---~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~---p~~~ 470 (603)
++..+...+...|++++|...+++..+... . .....+..+...|...|++++|...+++..+.. .. ....
T Consensus 225 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 304 (411)
T 4a1s_A 225 ACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQ 304 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 445555556666666666666665543210 0 012255556666666666666666666554320 00 0133
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007461 471 IYNSLMDMHGRAKNLRQVEKLWKEMERRKVT-PD----KVSYTTVISAYNRAREFDMCVKFYNEFRM 532 (603)
Q Consensus 471 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-p~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 532 (603)
++..+...|...|++++|...+++..+.... ++ ..++..+...|...|++++|.+.+++..+
T Consensus 305 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 305 SCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4455555555566666666555555322100 01 12344555555555555555555555544
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.44 E-value=1.9e-11 Score=106.70 Aligned_cols=167 Identities=14% Similarity=0.090 Sum_probs=135.9
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhh
Q 007461 116 EKSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGG 195 (603)
Q Consensus 116 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 195 (603)
++.+|..+...+.+.|++++|+..|++..+.+ +.+..++..+...+.+.|++++|...+.......+.+..++..+...
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSA 82 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence 56778888888888888888888888888776 55778888888888888888888888888888888888888888888
Q ss_pred hhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccCCH
Q 007461 196 YNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRA 275 (603)
Q Consensus 196 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 275 (603)
+...++++.|...+.+..+.... +...+..+...|.+.|++++|++.|++..+.++. +..+|..+..+|.+.|++
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~----~~~~~~~lg~~~~~~g~~ 157 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIALNTV-YADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG----FIRAYQSIGLAYEGKGLR 157 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCH
T ss_pred HHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHhCCchhHHHHHHHHHHhcch----hhhHHHHHHHHHHHCCCH
Confidence 88888888888888887775432 6677888888888888888888888888776543 346788888888888888
Q ss_pred HHHHHHHHHHHHC
Q 007461 276 FEALKFFRDMKEK 288 (603)
Q Consensus 276 ~~A~~~~~~m~~~ 288 (603)
++|++.|++.++.
T Consensus 158 ~~A~~~~~~al~~ 170 (184)
T 3vtx_A 158 DEAVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhC
Confidence 8888888888764
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.44 E-value=8.1e-11 Score=112.18 Aligned_cols=79 Identities=11% Similarity=0.062 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHh-cCCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCC-hh-hHHHHHHHHHHcCCHHHHHHHHH
Q 007461 169 KIANTLLQVFIT-DGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLD-SG-CYCQIMEAYYKIGDSEKVAALFL 245 (603)
Q Consensus 169 ~~a~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~-~~~~ll~~~~~~g~~~~a~~~~~ 245 (603)
++|..+|++... ..+.+...|..++..+.+.|++++|..+|++..+. .|+ .. +|..++..+.+.|++++|..+|+
T Consensus 81 ~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 158 (308)
T 2ond_A 81 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFK 158 (308)
T ss_dssp HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 445555555544 23444444555555555555555555555554442 221 21 44444444444455555555554
Q ss_pred HHHh
Q 007461 246 ECKS 249 (603)
Q Consensus 246 ~~~~ 249 (603)
+..+
T Consensus 159 ~a~~ 162 (308)
T 2ond_A 159 KARE 162 (308)
T ss_dssp HHHT
T ss_pred HHHh
Confidence 4444
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.43 E-value=3.8e-12 Score=122.93 Aligned_cols=133 Identities=11% Similarity=0.083 Sum_probs=70.3
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHc----CCC-CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----HH
Q 007461 436 AYSSMVAMYGKTGRIRDAMWLVAKMKAK----GCE-PNVWIYNSLMDMHGRAKNLRQVEKLWKEMERRKV-TPD----KV 505 (603)
Q Consensus 436 ~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~p~----~~ 505 (603)
.+..+...+...|++++|...+++..+. +.. ....++..+...+...|++++|...+++..+... .++ ..
T Consensus 185 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 264 (338)
T 3ro2_A 185 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 264 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHH
Confidence 4444455555555555555555544321 000 0122455555555666666666666555532110 011 23
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 007461 506 SYTTVISAYNRAREFDMCVKFYNEFRMNGGV-ID----RAIAGIMVGVFSKLSQIEELVKLLQDMKSE 568 (603)
Q Consensus 506 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 568 (603)
++..+...|...|++++|...++++.+.... .+ ...+..+...|.+.|++++|.+.+++..+.
T Consensus 265 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 265 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 4566666667777777777777666542111 11 235566777777777777777777777654
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.42 E-value=3.4e-10 Score=107.81 Aligned_cols=218 Identities=9% Similarity=0.006 Sum_probs=102.3
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-------ccCCH-------HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 007461 276 FEALKFFRDMKEKGILEDPSIYASLICSFA-------SITEV-------KLAEELFKEAEEKGMLRDPEVCLKLVLMYIE 341 (603)
Q Consensus 276 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~-------~~g~~-------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 341 (603)
++|+.+|++.+... +-+...|..+...+. +.|++ ++|..++++..+.-.+.+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 45666666665531 124445555544443 23543 5566666665552112244455555555666
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HhcCChHHHHH
Q 007461 342 EGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINAY-CRIALYSKAEK 420 (603)
Q Consensus 342 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~-~~~g~~~~a~~ 420 (603)
.|++++|.++|++..+..+.-...+|..+...+.+.|++++|..+|++..+.. +.+...|....... ...|+.++|..
T Consensus 112 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~ 190 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFK 190 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHH
Confidence 66666666666665554321111145555555555555555555555555432 11222222221111 11355555555
Q ss_pred HHHHHHHcCCCcCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcC-CCC--CHhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007461 421 VFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKG-CEP--NVWIYNSLMDMHGRAKNLRQVEKLWKEME 496 (603)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 496 (603)
+|+...+.. +.+...|..++..+.+.|++++|..+|++..... +.| ....|..++..+.+.|+.+.|..+++++.
T Consensus 191 ~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~ 268 (308)
T 2ond_A 191 IFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 555544432 2334445555555555555555555555554431 222 23344444444444555555555555544
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.41 E-value=2.3e-11 Score=120.15 Aligned_cols=164 Identities=8% Similarity=0.010 Sum_probs=83.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHc----CC-CcCHhhHHHHHHHHHccCCHHHHHHHHHHHHHc----CC-CCCHh
Q 007461 401 TYASIINAYCRIALYSKAEKVFIEMQQK----GF-DKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAK----GC-EPNVW 470 (603)
Q Consensus 401 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~-~p~~~ 470 (603)
++..+...|...|++++|...|++..+. +- .....++..+...|...|++++|.+.+++..+. +. +....
T Consensus 186 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 265 (383)
T 3ulq_A 186 CHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQ 265 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHH
Confidence 4444555555555555555555554432 10 001234555556666666666666666555441 11 22344
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCC---CCC-HHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCCC-HHHH
Q 007461 471 IYNSLMDMHGRAKNLRQVEKLWKEMERRKV---TPD-KVSYTTVISAYNRARE---FDMCVKFYNEFRMNGGVID-RAIA 542 (603)
Q Consensus 471 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~---~p~-~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~~~~~~-~~~~ 542 (603)
++..+...|...|++++|...+++..+... .|. ...+..+...|...|+ +++|+.++++. +..++ ...+
T Consensus 266 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~ 342 (383)
T 3ulq_A 266 AYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFA 342 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHH
Confidence 455555666666666666666655533210 111 1224455555666666 55555555544 22222 2345
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHh
Q 007461 543 GIMVGVFSKLSQIEELVKLLQDMKS 567 (603)
Q Consensus 543 ~~l~~~~~~~g~~~~A~~~~~~m~~ 567 (603)
..+...|...|++++|.+.+++..+
T Consensus 343 ~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 343 IDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 5666667777777777777666554
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.40 E-value=2.8e-11 Score=122.58 Aligned_cols=195 Identities=10% Similarity=-0.033 Sum_probs=95.8
Q ss_pred CHHHHHHHHHHHHhcCCh-HHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhHHHHHH
Q 007461 398 GQVTYASIINAYCRIALY-SKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLM 476 (603)
Q Consensus 398 ~~~~~~~ll~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li 476 (603)
+...+..+...+...|++ ++|...|++..+.. +.+...|..+...|.+.|++++|.+.|++..+. .|+...+..+.
T Consensus 101 ~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~lg 177 (474)
T 4abn_A 101 EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFSGALTH--CKNKVSLQNLS 177 (474)
T ss_dssp CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCHHHHHHHH
Confidence 344444444555555555 55555555554443 333445555555555555555555555555543 34444555555
Q ss_pred HHHHhc---------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc--------CCHHHHHHHHHHHHHCCCC--C
Q 007461 477 DMHGRA---------KNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNRA--------REFDMCVKFYNEFRMNGGV--I 537 (603)
Q Consensus 477 ~~~~~~---------g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~--------g~~~~a~~~~~~~~~~~~~--~ 537 (603)
..|... |++++|+..+++..+.. +-+...|..+..+|... |++++|++.|+++.+.... -
T Consensus 178 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 256 (474)
T 4abn_A 178 MVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASS 256 (474)
T ss_dssp HHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGG
T ss_pred HHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCccc
Confidence 555555 55555555555554332 11234455555555544 5555555555555543220 1
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHH
Q 007461 538 DRAIAGIMVGVFSKLSQIEELVKLLQDMKSEGTKLDERLYHSAMNALRDAGLQMQAQWLQ 597 (603)
Q Consensus 538 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~a~~~~g~~~~a~~~~ 597 (603)
+...|..+..+|...|++++|.+.|++..+.. +.+...+..+..++...|+.++|.+.+
T Consensus 257 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 257 NPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44455555555555555555555555555432 123334444455555555555555433
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.40 E-value=4e-11 Score=118.34 Aligned_cols=197 Identities=8% Similarity=-0.026 Sum_probs=113.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcC--C----CcCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCC-CCC----H
Q 007461 401 TYASIINAYCRIALYSKAEKVFIEMQQKG--F----DKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGC-EPN----V 469 (603)
Q Consensus 401 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~----~ 469 (603)
++..+...+...|++++|...+.+..+.- . +....+++.+...|...|++++|.+.+++..+..- .++ .
T Consensus 145 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 224 (383)
T 3ulq_A 145 FFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMG 224 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHH
Confidence 44555555556666666666665554320 0 11134566677777777777777777776654200 011 2
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC---HH
Q 007461 470 WIYNSLMDMHGRAKNLRQVEKLWKEMERR----KV-TPDKVSYTTVISAYNRAREFDMCVKFYNEFRMNGGV-ID---RA 540 (603)
Q Consensus 470 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-~~---~~ 540 (603)
.++..+...|...|++++|...+++..+. +. +....++..+...|...|++++|...+++..+.... .+ ..
T Consensus 225 ~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 304 (383)
T 3ulq_A 225 RTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLS 304 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 35666777777777777777777776541 22 222345667777777777777777777766543110 11 12
Q ss_pred HHHHHHHHHHccCC---HHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCcHHHHHHHHhhc
Q 007461 541 IAGIMVGVFSKLSQ---IEELVKLLQDMKSEGTKLD-ERLYHSAMNALRDAGLQMQAQWLQQNF 600 (603)
Q Consensus 541 ~~~~l~~~~~~~g~---~~~A~~~~~~m~~~g~~~~-~~~~~~ll~a~~~~g~~~~a~~~~~~~ 600 (603)
.+..+...+...|+ +++|+.++++. +..|+ ...+..+...+...|++++|...+++.
T Consensus 305 ~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~a 365 (383)
T 3ulq_A 305 EFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDVAKYYHERKNFQKASAYFLKV 365 (383)
T ss_dssp HHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 34556666777777 56666666554 22222 335556666777777777777766653
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.39 E-value=9.1e-11 Score=102.38 Aligned_cols=167 Identities=12% Similarity=0.022 Sum_probs=101.9
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhHHHHHHH
Q 007461 398 GQVTYASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMD 477 (603)
Q Consensus 398 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 477 (603)
+...|..+...+...|++++|...|++..+.. +-+...+..+...|.+.|++++|...++...... +.+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 34455666666666666666666666666554 4455566666666666666666666666665542 234455555556
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHH
Q 007461 478 MHGRAKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNRAREFDMCVKFYNEFRMNGGVIDRAIAGIMVGVFSKLSQIEE 557 (603)
Q Consensus 478 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 557 (603)
.+...++++.+...+.+..+.. +-+...+..+...|...|++++|++.|++..+.... +...|..+..+|.+.|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG-FIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcch-hhhHHHHHHHHHHHCCCHHH
Confidence 6666666666666666665432 223455666666666667777777777666665332 45566666666777777777
Q ss_pred HHHHHHHHHhC
Q 007461 558 LVKLLQDMKSE 568 (603)
Q Consensus 558 A~~~~~~m~~~ 568 (603)
|++.|++.++.
T Consensus 160 A~~~~~~al~~ 170 (184)
T 3vtx_A 160 AVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhC
Confidence 77777666653
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.38 E-value=1.9e-11 Score=123.90 Aligned_cols=210 Identities=10% Similarity=-0.049 Sum_probs=118.9
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCh-HHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHHHHHH
Q 007461 133 WDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKF-KIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEK 211 (603)
Q Consensus 133 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 211 (603)
+++++..++...... +.+...+..+...+...|++ ++|+..|++..+..+.+..+|..+...|...|++++|++.|++
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 445555555544332 34556666666666666666 6666666666666666666666666666666666666666666
Q ss_pred HHhCCCCCChhhHHHHHHHHHHc---------CCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhcc--------CC
Q 007461 212 MKSAGIVLDSGCYCQIMEAYYKI---------GDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKS--------GR 274 (603)
Q Consensus 212 m~~~~~~p~~~~~~~ll~~~~~~---------g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~--------g~ 274 (603)
..+.. |+...+..+...|... |++++|.+.|++..+.++. +...|..+..+|... |+
T Consensus 163 al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~lg~~~~~~~~~~~~~~g~ 236 (474)
T 4abn_A 163 ALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL----DGRSWYILGNAYLSLYFNTGQNPKI 236 (474)
T ss_dssp HHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred HHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHHHHhhccccch
Confidence 66543 4455666666666666 6666666666666554432 234566666666555 55
Q ss_pred HHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 007461 275 AFEALKFFRDMKEKGIL--EDPSIYASLICSFASITEVKLAEELFKEAEEKGMLRDPEVCLKLVLMYIEEGLVEKTLD 350 (603)
Q Consensus 275 ~~~A~~~~~~m~~~g~~--p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 350 (603)
+++|++.|++..+.... -+...|..+..++...|++++|.+.++++.+... .+...+..+...+...|++++|.+
T Consensus 237 ~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~a~~~l~~~~~~lg~~~eAi~ 313 (474)
T 4abn_A 237 SQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDP-AWPEPQQREQQLLEFLSRLTSLLE 313 (474)
T ss_dssp HHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666665553110 1444555555555555555555555555555431 234444455555555555555444
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.36 E-value=2.6e-12 Score=122.71 Aligned_cols=171 Identities=14% Similarity=0.049 Sum_probs=107.1
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhc--------
Q 007461 117 KSTLKLLIRYLVQSKKWDSIVSLSEDFKIY-------NVLPDAHTCSRLVASCVRARKFKIANTLLQVFITD-------- 181 (603)
Q Consensus 117 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-------- 181 (603)
..++..+...+...|++++|+.+++++.+. ..+....++..+...+...|++++|...+++....
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 445666666666777777777777666653 22233455666666666777777777766666543
Q ss_pred CCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHhC------CC-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCC---
Q 007461 182 GEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSA------GI-VLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRK--- 251 (603)
Q Consensus 182 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~------~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--- 251 (603)
.+....++..+...|...|++++|...+++..+. +. .....++..+...+...|++++|.+.|++.....
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 186 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTK 186 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 1234566667777777777777777777766543 11 1133456667777777777777777777665430
Q ss_pred -CCCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 007461 252 -LDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKE 287 (603)
Q Consensus 252 -~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 287 (603)
....+....++..+...|...|++++|.+.|+++.+
T Consensus 187 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 187 LGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 011222345677777788888888888888877764
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.34 E-value=1.1e-11 Score=118.25 Aligned_cols=172 Identities=15% Similarity=0.081 Sum_probs=122.5
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHhc--------CCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHhC------C
Q 007461 151 DAHTCSRLVASCVRARKFKIANTLLQVFITD--------GEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSA------G 216 (603)
Q Consensus 151 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~------~ 216 (603)
+..++..+...+...|++++|..+++++... .+....++..+...|...|++++|...+++..+. +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 4567788888889999999999999888773 3456778888888888899999988888887653 1
Q ss_pred -CCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCC----CCCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHC---
Q 007461 217 -IVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRK----LDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEK--- 288 (603)
Q Consensus 217 -~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~----~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--- 288 (603)
......++..+...|...|++++|...|++..... ....+....++..+...+...|++++|++.|++..+.
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 12234567778888888888888888887776531 0111223456777788888888888888888777653
Q ss_pred ---CCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 007461 289 ---GILE-DPSIYASLICSFASITEVKLAEELFKEAEE 322 (603)
Q Consensus 289 ---g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 322 (603)
+..| ...++..+...+...|++++|...++++.+
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1122 234566667777777777777777777665
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.30 E-value=5.2e-10 Score=110.05 Aligned_cols=165 Identities=6% Similarity=-0.055 Sum_probs=87.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCC--CCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHC----CC-CC-CHHHHH
Q 007461 227 IMEAYYKIGDSEKVAALFLECKSRKLD--STPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEK----GI-LE-DPSIYA 298 (603)
Q Consensus 227 ll~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~-~p-~~~~~~ 298 (603)
....+...|++++|...|++....... ..+....++..+...|...|++++|+..+++..+. +. .+ ...++.
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 344455667777777777766543211 11122456667777777777777777777666532 10 11 133455
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHcC--CC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----CCCCCCHhhHH
Q 007461 299 SLICSFASITEVKLAEELFKEAEEKG--ML---RDPEVCLKLVLMYIEEGLVEKTLDVVESMKN-----AKLKISDCISC 368 (603)
Q Consensus 299 ~ll~~~~~~g~~~~a~~~~~~~~~~~--~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~~~~ 368 (603)
.+...+...|++++|.+.+++..+.. .. ....++..+...|...|++++|.+.+++..+ ..+.. ..++.
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~-~~~~~ 265 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLL-PKVLF 265 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGH-HHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhH-HHHHH
Confidence 56666666677777666666655421 00 0123444555555666666666665555544 22211 33444
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Q 007461 369 AIVNGFSKRRGYWAAVKVYEQLIS 392 (603)
Q Consensus 369 ~li~~~~~~~~~~~a~~~~~~m~~ 392 (603)
.+...+.+.|++++|...+++..+
T Consensus 266 ~la~~~~~~g~~~~A~~~~~~al~ 289 (378)
T 3q15_A 266 GLSWTLCKAGQTQKAFQFIEEGLD 289 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH
Confidence 444455555555555555554443
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.30 E-value=4e-10 Score=110.92 Aligned_cols=164 Identities=12% Similarity=0.056 Sum_probs=77.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHc----CCC-cCHhhHHHHHHHHHccCCHHHHHHHHHHHHHc----CCCCCHhH
Q 007461 401 TYASIINAYCRIALYSKAEKVFIEMQQK----GFD-KCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAK----GCEPNVWI 471 (603)
Q Consensus 401 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~~~~ 471 (603)
++..+...|...|++++|...|++..+. +.+ ....++..+...|...|++++|.+.+++..+. +.+....+
T Consensus 184 ~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 263 (378)
T 3q15_A 184 SLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKV 263 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHH
Confidence 3444444555555555555555444331 100 11234555555555555555555555555440 11122444
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCC---CCC-HHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCCCH-HHHH
Q 007461 472 YNSLMDMHGRAKNLRQVEKLWKEMERRKV---TPD-KVSYTTVISAYNRARE---FDMCVKFYNEFRMNGGVIDR-AIAG 543 (603)
Q Consensus 472 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~---~p~-~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~~~~~~~-~~~~ 543 (603)
+..+...|.+.|++++|...+++..+... .|. ...+..+...|...++ +++|+..+++ .+..++. ..+.
T Consensus 264 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~---~~~~~~~~~~~~ 340 (378)
T 3q15_A 264 LFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK---KNLHAYIEACAR 340 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH---TTCHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh---CCChhHHHHHHH
Confidence 55555555666666666666655543211 111 1224444444445555 4455554444 2112221 2444
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHh
Q 007461 544 IMVGVFSKLSQIEELVKLLQDMKS 567 (603)
Q Consensus 544 ~l~~~~~~~g~~~~A~~~~~~m~~ 567 (603)
.+...|...|++++|.+.+++..+
T Consensus 341 ~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 341 SAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH
Confidence 566666666666666666665543
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.30 E-value=8.7e-10 Score=108.30 Aligned_cols=166 Identities=10% Similarity=-0.125 Sum_probs=96.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH----HHHHHHHHHHccCChHHHHHHHHHHHhcCC--c----chhhHHH
Q 007461 122 LLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAH----TCSRLVASCVRARKFKIANTLLQVFITDGE--I----ALLAFNS 191 (603)
Q Consensus 122 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~----~~~~~~~ 191 (603)
.+...+...|++++|...+++........+.. ++..+...+...|++++|...+++.....+ . ...+++.
T Consensus 19 ~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 98 (373)
T 1hz4_A 19 LRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQ 98 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 34445566788888888888776654222222 345555666677778777777776654322 1 1233455
Q ss_pred HHhhhhhcCcHHHHHHHHHHHHhC----CCC--C-ChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCC-ccHHHHH
Q 007461 192 AMGGYNKLHMYYSTILVYEKMKSA----GIV--L-DSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTP-FSTHMYK 263 (603)
Q Consensus 192 l~~~~~~~~~~~~a~~~~~~m~~~----~~~--p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~~ 263 (603)
+...+...|++++|...+++..+. +.. | ....+..+...+...|++++|...+++.........+ ....+|.
T Consensus 99 la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 178 (373)
T 1hz4_A 99 QSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLA 178 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHH
Confidence 666667777777777777665542 111 1 1234455666667777777777777666543322111 1224556
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHH
Q 007461 264 ILCDSLGKSGRAFEALKFFRDMKE 287 (603)
Q Consensus 264 ~li~~~~~~g~~~~A~~~~~~m~~ 287 (603)
.+...+...|++++|...+++...
T Consensus 179 ~la~~~~~~g~~~~A~~~l~~a~~ 202 (373)
T 1hz4_A 179 MLIQCSLARGDLDNARSQLNRLEN 202 (373)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 666666667777777776666643
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.29 E-value=1.3e-09 Score=106.95 Aligned_cols=270 Identities=9% Similarity=-0.068 Sum_probs=187.4
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHcCCCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-CC----HhhHHH
Q 007461 299 SLICSFASITEVKLAEELFKEAEEKGMLRDPE----VCLKLVLMYIEEGLVEKTLDVVESMKNAKLK-IS----DCISCA 369 (603)
Q Consensus 299 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~~ 369 (603)
.....+...|++++|...+++........+.. +++.+...+...|++++|.+.+++....... .+ ..++..
T Consensus 19 ~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 98 (373)
T 1hz4_A 19 LRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQ 98 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 34445567899999999999988765333332 4566777888899999999999887643211 11 122556
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHc----CCC--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC----cCHhhHH
Q 007461 370 IVNGFSKRRGYWAAVKVYEQLISQ----GCI--P-GQVTYASIINAYCRIALYSKAEKVFIEMQQKGFD----KCVVAYS 438 (603)
Q Consensus 370 li~~~~~~~~~~~a~~~~~~m~~~----g~~--p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~----~~~~~~~ 438 (603)
+...+...|++++|+..+++..+. +.. | ....+..+...+...|++++|...+++..+.... .....+.
T Consensus 99 la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 178 (373)
T 1hz4_A 99 QSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLA 178 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHH
Confidence 777888899999999999887653 221 2 2345566777888899999999999988764321 1235677
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHcCCCCC-HhHHH-----HHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHH
Q 007461 439 SMVAMYGKTGRIRDAMWLVAKMKAKGCEPN-VWIYN-----SLMDMHGRAKNLRQVEKLWKEMERRKVTPD---KVSYTT 509 (603)
Q Consensus 439 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~-----~li~~~~~~g~~~~a~~~~~~m~~~~~~p~---~~~~~~ 509 (603)
.+...+...|++++|...+++.....-.++ ...+. ..+..+...|++++|...+++.......+. ...+..
T Consensus 179 ~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 258 (373)
T 1hz4_A 179 MLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRN 258 (373)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHH
Confidence 788888899999999999998865311111 11222 233447788999999999988865432211 224667
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC----CCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 007461 510 VISAYNRAREFDMCVKFYNEFRMN----GGVIDR-AIAGIMVGVFSKLSQIEELVKLLQDMKSE 568 (603)
Q Consensus 510 li~~~~~~g~~~~a~~~~~~~~~~----~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 568 (603)
+...+...|++++|...+++.... +..++. ..+..+..++...|+.++|...+++....
T Consensus 259 la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~ 322 (373)
T 1hz4_A 259 IARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL 322 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 778888899999999999887643 211122 25566777888899999999999998865
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.27 E-value=3.6e-10 Score=98.40 Aligned_cols=166 Identities=14% Similarity=0.100 Sum_probs=116.6
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhh
Q 007461 117 KSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGY 196 (603)
Q Consensus 117 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 196 (603)
...+..+...+...|++++|+..++.+.+.. +.+..++..+...+...|++++|...++++....+.+..++..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 3456666777777788888888887776554 446667777777777778888888888777777666777777777777
Q ss_pred hhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccCCHH
Q 007461 197 NKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAF 276 (603)
Q Consensus 197 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 276 (603)
...|++++|.+.++++.+... .+...+..+...+...|++++|.+.+++.....+. +..++..+...+...|+++
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~~~~la~~~~~~~~~~ 161 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEANP-INFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPN----EGKVHRAIAFSYEQMGRHE 161 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHH
T ss_pred HHhcCHHHHHHHHHHHHhcCc-HhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCcc----chHHHHHHHHHHHHcCCHH
Confidence 777777777777777766532 35566667777777777777777777776655432 2356777777777777777
Q ss_pred HHHHHHHHHHHC
Q 007461 277 EALKFFRDMKEK 288 (603)
Q Consensus 277 ~A~~~~~~m~~~ 288 (603)
+|.+.+++..+.
T Consensus 162 ~A~~~~~~~~~~ 173 (186)
T 3as5_A 162 EALPHFKKANEL 173 (186)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc
Confidence 777777766543
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=1.8e-10 Score=121.41 Aligned_cols=166 Identities=11% Similarity=0.000 Sum_probs=145.2
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhh
Q 007461 116 EKSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGG 195 (603)
Q Consensus 116 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 195 (603)
+...|+.|...+.+.|++++|+..|++..+.. +.+..+|..+..+|.+.|++++|+..|++..+..+.+..+|+.+...
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~ 86 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 46679999999999999999999999998876 55688899999999999999999999999999888899999999999
Q ss_pred hhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccCCH
Q 007461 196 YNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRA 275 (603)
Q Consensus 196 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 275 (603)
|...|++++|++.|++.++.... +...|..+..+|.+.|++++|++.|++..+.++. +..+|..+...+...|++
T Consensus 87 l~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~----~~~a~~~L~~~l~~~g~~ 161 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALKLKPD----FPDAYCNLAHCLQIVCDW 161 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC----CHHHHHHHHHHHHHTTCC
T ss_pred HHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----ChHHHhhhhhHHHhcccH
Confidence 99999999999999998886433 6778999999999999999999999998877644 356899999999999999
Q ss_pred HHHHHHHHHHHH
Q 007461 276 FEALKFFRDMKE 287 (603)
Q Consensus 276 ~~A~~~~~~m~~ 287 (603)
++|.+.+++..+
T Consensus 162 ~~A~~~~~kal~ 173 (723)
T 4gyw_A 162 TDYDERMKKLVS 173 (723)
T ss_dssp TTHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999998888754
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.22 E-value=1.8e-09 Score=93.84 Aligned_cols=127 Identities=9% Similarity=0.034 Sum_probs=51.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHh
Q 007461 402 YASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGR 481 (603)
Q Consensus 402 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 481 (603)
+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.++++.+. .+.+...+..+...+..
T Consensus 45 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~a~~~~~ 122 (186)
T 3as5_A 45 ALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEA-NPINFNVRFRLGVALDN 122 (186)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-CcHhHHHHHHHHHHHHH
Confidence 3333333333444444444444333332 223333444444444444444444444444332 12233344444444444
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007461 482 AKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNRAREFDMCVKFYNEFR 531 (603)
Q Consensus 482 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 531 (603)
.|++++|...++++.+.. +.+...+..+...+...|++++|.+.++++.
T Consensus 123 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 171 (186)
T 3as5_A 123 LGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALPHFKKAN 171 (186)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 444444444444443321 1123344444444444444444444444443
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.20 E-value=2.2e-09 Score=97.20 Aligned_cols=209 Identities=14% Similarity=0.075 Sum_probs=151.8
Q ss_pred CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHh
Q 007461 115 PEKSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMG 194 (603)
Q Consensus 115 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 194 (603)
.++..+......+...|++++|+..|+...+...+++...+..+...+...|++++|+..+++.....+.+..+|..+..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 45678888888888999999999999988887633777777778888888999999999999998888888888999999
Q ss_pred hhhhcCcHHHHHHHHHHHHhCCCCCCh-------hhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHH
Q 007461 195 GYNKLHMYYSTILVYEKMKSAGIVLDS-------GCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCD 267 (603)
Q Consensus 195 ~~~~~~~~~~a~~~~~~m~~~~~~p~~-------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~ 267 (603)
.|...|++++|+..+++..+.... +. ..|..+...+...|++++|.+.|++....++. ..+..+|..+..
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~~~l~~ 161 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSK--KWKTDALYSLGV 161 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCH--HHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCC--cccHHHHHHHHH
Confidence 999999999999999988875322 34 45777788888899999999999988766432 003457777777
Q ss_pred HHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 007461 268 SLGKSGRAFEALKFFRDMKEKGILEDPSIYASLICSFASITEVKLAEELFKEAEEKGMLRDPEVCLKL 335 (603)
Q Consensus 268 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 335 (603)
.|...|+ ..++++...+ ..+...|..... ...+.+++|...+++..+... .+..+...+
T Consensus 162 ~~~~~~~-----~~~~~a~~~~-~~~~~~~~~~~~--~~~~~~~~A~~~~~~a~~l~p-~~~~~~~~l 220 (228)
T 4i17_A 162 LFYNNGA-----DVLRKATPLA-SSNKEKYASEKA--KADAAFKKAVDYLGEAVTLSP-NRTEIKQMQ 220 (228)
T ss_dssp HHHHHHH-----HHHHHHGGGT-TTCHHHHHHHHH--HHHHHHHHHHHHHHHHHHHCT-TCHHHHHHH
T ss_pred HHHHHHH-----HHHHHHHhcc-cCCHHHHHHHHH--HHHHHHHHHHHHHHHHhhcCC-CCHHHHHHH
Confidence 7765443 3445554442 223344443332 234567888888888888652 244444443
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=6e-10 Score=117.45 Aligned_cols=167 Identities=11% Similarity=0.048 Sum_probs=149.1
Q ss_pred CCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHH
Q 007461 149 LPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIM 228 (603)
Q Consensus 149 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll 228 (603)
+.+..+|+.|...+.+.|++++|++.|++..+..+.+..+|+.+..+|.+.|++++|++.|++.++.... +...|..+.
T Consensus 6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nLg 84 (723)
T 4gyw_A 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMG 84 (723)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHH
Confidence 3456789999999999999999999999999999999999999999999999999999999999986433 678999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHcc
Q 007461 229 EAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEKGILE-DPSIYASLICSFASI 307 (603)
Q Consensus 229 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~ 307 (603)
.+|.+.|++++|++.|++..+.++. +..+|+.+...|.+.|++++|++.|++.++. .| +...+..+..++...
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~l~P~----~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l--~P~~~~a~~~L~~~l~~~ 158 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQINPA----FADAHSNLASIHKDSGNIPEAIASYRTALKL--KPDFPDAYCNLAHCLQIV 158 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHhhhhhHHHhc
Confidence 9999999999999999999887644 3578999999999999999999999999886 45 567889999999999
Q ss_pred CCHHHHHHHHHHHHH
Q 007461 308 TEVKLAEELFKEAEE 322 (603)
Q Consensus 308 g~~~~a~~~~~~~~~ 322 (603)
|++++|.+.++++.+
T Consensus 159 g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 159 CDWTDYDERMKKLVS 173 (723)
T ss_dssp TCCTTHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHH
Confidence 999999988888765
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.17 E-value=7e-09 Score=93.85 Aligned_cols=191 Identities=13% Similarity=0.020 Sum_probs=91.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHH
Q 007461 366 ISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYG 445 (603)
Q Consensus 366 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 445 (603)
.+......+...|++++|+..|++..+....++...+..+..++...|++++|...|++..+.. +.+...|..+...|.
T Consensus 9 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 87 (228)
T 4i17_A 9 QLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKSAAYR 87 (228)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHHHHHH
Confidence 3444444444444445555544444443322344444445555555555555555555555443 223445555555555
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCCH-------hHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHH
Q 007461 446 KTGRIRDAMWLVAKMKAKGCEPNV-------WIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPD---KVSYTTVISAYN 515 (603)
Q Consensus 446 ~~g~~~~A~~~~~~m~~~~~~p~~-------~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~---~~~~~~li~~~~ 515 (603)
+.|++++|...+++..+.. +.+. ..|..+...+...|++++|+..|++.++. .|+ ...+..+..+|.
T Consensus 88 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~~~~~ 164 (228)
T 4i17_A 88 DMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLGVLFY 164 (228)
T ss_dssp HTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHHHHHH
T ss_pred HcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHHHHHH
Confidence 5555555555555555431 1122 23455555555666666666666666532 343 234444444443
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 007461 516 RAREFDMCVKFYNEFRMNGGVIDRAIAGIMVGVFSKLSQIEELVKLLQDMKSE 568 (603)
Q Consensus 516 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 568 (603)
.. +..+++++...+.. +...|.... ....+.+++|+..+++..+.
T Consensus 165 ~~-----~~~~~~~a~~~~~~-~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l 209 (228)
T 4i17_A 165 NN-----GADVLRKATPLASS-NKEKYASEK--AKADAAFKKAVDYLGEAVTL 209 (228)
T ss_dssp HH-----HHHHHHHHGGGTTT-CHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
T ss_pred HH-----HHHHHHHHHhcccC-CHHHHHHHH--HHHHHHHHHHHHHHHHHhhc
Confidence 32 22333443333211 233332222 22334566777777766654
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.14 E-value=5.2e-10 Score=104.88 Aligned_cols=144 Identities=15% Similarity=0.083 Sum_probs=69.7
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhC------CC-CCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhH
Q 007461 117 KSTLKLLIRYLVQSKKWDSIVSLSEDFKIY------NV-LPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAF 189 (603)
Q Consensus 117 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 189 (603)
..++..+...+...|++++|+..++++.+. +- +....++..+...+...|++++|...+++.....
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~------- 115 (283)
T 3edt_B 43 ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIR------- 115 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH-------
Confidence 445666666666777777777776666543 11 1123445555555555566666655555544330
Q ss_pred HHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCCCCCccHHHHHHH
Q 007461 190 NSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSR----KLDSTPFSTHMYKIL 265 (603)
Q Consensus 190 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~~~~~~l 265 (603)
++......+....++..+...|...|++++|...|++.... .....+....++..+
T Consensus 116 --------------------~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 175 (283)
T 3edt_B 116 --------------------EKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNL 175 (283)
T ss_dssp --------------------HHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHH
T ss_pred --------------------HHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 00000000112234444445555555555555555444332 001111123455555
Q ss_pred HHHHhccCCHHHHHHHHHHHHH
Q 007461 266 CDSLGKSGRAFEALKFFRDMKE 287 (603)
Q Consensus 266 i~~~~~~g~~~~A~~~~~~m~~ 287 (603)
...|...|++++|.+.|++..+
T Consensus 176 a~~~~~~g~~~~A~~~~~~~l~ 197 (283)
T 3edt_B 176 ASCYLKQGKYQDAETLYKEILT 197 (283)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 6666666666666666655543
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.12 E-value=9.1e-10 Score=103.19 Aligned_cols=201 Identities=11% Similarity=0.138 Sum_probs=103.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHc------CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHc------C-CC
Q 007461 366 ISCAIVNGFSKRRGYWAAVKVYEQLISQ------GCIP-GQVTYASIINAYCRIALYSKAEKVFIEMQQK------G-FD 431 (603)
Q Consensus 366 ~~~~li~~~~~~~~~~~a~~~~~~m~~~------g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~------~-~~ 431 (603)
++..+...+...|++++|+..+++..+. +-.| ...++..+...+...|++++|...+++..+. . .+
T Consensus 45 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 124 (283)
T 3edt_B 45 MLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHP 124 (283)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCCh
Confidence 3444555555555555555555544432 1111 2334555666666666666666666665543 1 12
Q ss_pred cCHhhHHHHHHHHHccCCHHHHHHHHHHHHHc------CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhC------
Q 007461 432 KCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAK------GCEP-NVWIYNSLMDMHGRAKNLRQVEKLWKEMERR------ 498 (603)
Q Consensus 432 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------ 498 (603)
.....+..+...|...|++++|...+++..+. +-.| ...++..+...|...|++++|...+++..+.
T Consensus 125 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~ 204 (283)
T 3edt_B 125 DVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEF 204 (283)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Confidence 23556666677777777777777777766543 1112 2445666667777777777777777766542
Q ss_pred -CCCCCH-HHHHHHHHHHHhcCCHHHHHH------HHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 007461 499 -KVTPDK-VSYTTVISAYNRAREFDMCVK------FYNEFRMNGGVIDRAIAGIMVGVFSKLSQIEELVKLLQDMKS 567 (603)
Q Consensus 499 -~~~p~~-~~~~~li~~~~~~g~~~~a~~------~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 567 (603)
...+.. ..+..+...+...+....+.. .++..... .......+..+...|...|++++|.+++++..+
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 205 GSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVD-SPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp SSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCC-CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 112222 223333333333222222222 11111100 011223566777777888888888888877664
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.06 E-value=8.4e-09 Score=84.13 Aligned_cols=128 Identities=15% Similarity=0.131 Sum_probs=70.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhh
Q 007461 119 TLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNK 198 (603)
Q Consensus 119 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 198 (603)
.|..+...+...|++++|+.+++.+.+.+ +.+...+..+...+...|++++|...++++....+.+...+..+...+..
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 34555566666666666666666665543 33455555555556666666666666666555555555555555555555
Q ss_pred cCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007461 199 LHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECK 248 (603)
Q Consensus 199 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 248 (603)
.|++++|.+.++++.+... .+..++..+...+.+.|++++|...|+++.
T Consensus 82 ~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 130 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKAL 130 (136)
T ss_dssp TTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 5555555555555554321 133444445555555555555555555443
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.05 E-value=5.4e-08 Score=89.88 Aligned_cols=60 Identities=8% Similarity=-0.091 Sum_probs=26.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 007461 368 CAIVNGFSKRRGYWAAVKVYEQLISQGC-IPGQVTYASIINAYCRIALYSKAEKVFIEMQQ 427 (603)
Q Consensus 368 ~~li~~~~~~~~~~~a~~~~~~m~~~g~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 427 (603)
..+..++...|++++|++++.+....|. .-+...+..++..+.+.|+.+.|.+.++.|.+
T Consensus 104 ~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 104 YLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 3444444444555555555444433321 01223344444444444445555544444444
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.05 E-value=1.3e-08 Score=94.16 Aligned_cols=171 Identities=11% Similarity=-0.002 Sum_probs=101.3
Q ss_pred CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHccCChHHHHHHHHHHHhcCC---cchhh
Q 007461 115 PEKSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPD---AHTCSRLVASCVRARKFKIANTLLQVFITDGE---IALLA 188 (603)
Q Consensus 115 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~ 188 (603)
.+...+-.+...+.+.|++++|+..|+.+.+.. +.+ ..++..+..++.+.|++++|+..|+.+....| ....+
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 345566666777777777777777777777654 223 55666677777777777777777777777644 23456
Q ss_pred HHHHHhhhhh--------cCcHHHHHHHHHHHHhCCCCCChhhH-----------------HHHHHHHHHcCCHHHHHHH
Q 007461 189 FNSAMGGYNK--------LHMYYSTILVYEKMKSAGIVLDSGCY-----------------CQIMEAYYKIGDSEKVAAL 243 (603)
Q Consensus 189 ~~~l~~~~~~--------~~~~~~a~~~~~~m~~~~~~p~~~~~-----------------~~ll~~~~~~g~~~~a~~~ 243 (603)
+..+..++.. .|++++|+..|+++++.... +.... ..+...|.+.|++++|...
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 170 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN-HELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVT 170 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT-CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHH
Confidence 6666677766 77777777777777764321 22222 3344555555555555555
Q ss_pred HHHHHhCCCCCCCccHHHHHHHHHHHhcc----------CCHHHHHHHHHHHHHC
Q 007461 244 FLECKSRKLDSTPFSTHMYKILCDSLGKS----------GRAFEALKFFRDMKEK 288 (603)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~----------g~~~~A~~~~~~m~~~ 288 (603)
|+.+....+... .....+..+..+|... |++++|+..|+++.+.
T Consensus 171 ~~~~l~~~p~~~-~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 171 YEAVFDAYPDTP-WADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHHHHCTTST-THHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCc-hHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 555554433211 1223444455555443 5555555555555543
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.05 E-value=9.5e-08 Score=88.23 Aligned_cols=79 Identities=11% Similarity=0.101 Sum_probs=32.6
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007461 278 ALKFFRDMKEKGILEDPSIYASLICSFASITEVKLAEELFKEAEEKGM-LRDPEVCLKLVLMYIEEGLVEKTLDVVESMK 356 (603)
Q Consensus 278 A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 356 (603)
|+..|+++...+ .++..++..+..++...|++++|.+++...+..+. .-+...+..++..+.+.|+.+.|.+.++.|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 344444443332 22333333444444444444444444444433321 1133334444444444444444444444443
Q ss_pred h
Q 007461 357 N 357 (603)
Q Consensus 357 ~ 357 (603)
+
T Consensus 164 ~ 164 (310)
T 3mv2_B 164 N 164 (310)
T ss_dssp H
T ss_pred h
Confidence 3
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.04 E-value=1.3e-08 Score=95.94 Aligned_cols=203 Identities=8% Similarity=-0.025 Sum_probs=116.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC---Cc--CHhhHHHH
Q 007461 371 VNGFSKRRGYWAAVKVYEQLISQ----GCIPG-QVTYASIINAYCRIALYSKAEKVFIEMQQKGF---DK--CVVAYSSM 440 (603)
Q Consensus 371 i~~~~~~~~~~~a~~~~~~m~~~----g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~---~~--~~~~~~~l 440 (603)
...|...|++++|+..|++.... |-.++ ..+|+.+...|.+.|++++|...+++..+... .+ -..+++.+
T Consensus 44 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~l 123 (292)
T 1qqe_A 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFEL 123 (292)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 56677777777777777766542 21111 34667777777777777777777777665421 11 13456667
Q ss_pred HHHHHcc-CCHHHHHHHHHHHHHcCCCC---C----HhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH------HH
Q 007461 441 VAMYGKT-GRIRDAMWLVAKMKAKGCEP---N----VWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDK------VS 506 (603)
Q Consensus 441 i~~~~~~-g~~~~A~~~~~~m~~~~~~p---~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~------~~ 506 (603)
...|... |++++|+..|++..+. .| + ..++..+...+...|++++|...|++..+....... ..
T Consensus 124 g~~~~~~lg~~~~A~~~~~~Al~~--~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 201 (292)
T 1qqe_A 124 GEILENDLHDYAKAIDCYELAGEW--YAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDY 201 (292)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHH--HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHH
T ss_pred HHHHHHhhcCHHHHHHHHHHHHHH--HHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHH
Confidence 7777775 7777777777776653 11 1 245666677777777777777777777654322211 13
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHH---HHHHHHHHHH--ccCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 007461 507 YTTVISAYNRAREFDMCVKFYNEFRMNGGVI-DRA---IAGIMVGVFS--KLSQIEELVKLLQDMKSEGTKLDERLYHS 579 (603)
Q Consensus 507 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~---~~~~l~~~~~--~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ 579 (603)
|..+..++...|++++|...+++..+..... +.. .+..++..+. ..+++++|++.|+++ +..|...-..
T Consensus 202 ~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~----~~l~~~~~~~ 276 (292)
T 1qqe_A 202 FLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNF----MRLDKWKITI 276 (292)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTS----SCCCHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccC----CccHHHHHHH
Confidence 5556666677777777777777766532221 111 2233444443 345566666666544 2345544333
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=99.02 E-value=8.4e-07 Score=89.67 Aligned_cols=100 Identities=13% Similarity=0.103 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCc-HHHHHHHHHH
Q 007461 133 WDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHM-YYSTILVYEK 211 (603)
Q Consensus 133 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~ 211 (603)
.+.|..+|+.+...- |. ++++.+..+|++....- |+...|...+....+.+. .+....+|+.
T Consensus 11 i~~aR~vyer~l~~~--P~--------------~~~e~~~~iferal~~~-ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~ 73 (493)
T 2uy1_A 11 LSSPSAIMEHARRLY--MS--------------KDYRSLESLFGRCLKKS-YNLDLWMLYIEYVRKVSQKKFKLYEVYEF 73 (493)
T ss_dssp -CCHHHHHHHHHHHH--HT--------------TCHHHHHHHHHHHSTTC-CCHHHHHHHHHHHHHHC----CTHHHHHH
T ss_pred hHHHHHHHHHHHHHC--CC--------------CCHHHHHHHHHHHhccC-CCHHHHHHHHHHHHHhCchHHHHHHHHHH
Confidence 566666666655431 22 67777777777777643 466677777766666553 3445556665
Q ss_pred HHhC-CCCC-ChhhHHHHHHHHH----HcCCHHHHHHHHHHHHh
Q 007461 212 MKSA-GIVL-DSGCYCQIMEAYY----KIGDSEKVAALFLECKS 249 (603)
Q Consensus 212 m~~~-~~~p-~~~~~~~ll~~~~----~~g~~~~a~~~~~~~~~ 249 (603)
.+.. |..| +...|...+..+. ..|+++.+.++|++...
T Consensus 74 al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~ 117 (493)
T 2uy1_A 74 TLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQ 117 (493)
T ss_dssp HHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHT
T ss_pred HHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHh
Confidence 5542 3222 4455555555443 23556667777776665
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.98 E-value=1e-08 Score=108.64 Aligned_cols=165 Identities=9% Similarity=-0.121 Sum_probs=89.9
Q ss_pred HHHHHHHHh--------hCCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHH
Q 007461 100 AYDYYNEAK--------KLPEFRPEKSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIA 171 (603)
Q Consensus 100 a~~~~~~~~--------~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 171 (603)
|++.|+.+. +.. +.+...+..+...+.+.|++++|+..++++.+.+ +.+...|..+..++...|++++|
T Consensus 410 A~~~~~~al~~~~~~~~~~~--p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A 486 (681)
T 2pzi_A 410 TLDSLRAARHGALDADGVDF--SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLTGDYDSA 486 (681)
T ss_dssp HHHHHHHHHTC-------CC--TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHhhhhccccccccc--ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHcCCHHHH
Confidence 666666555 221 3344455555666666666666666666655543 34455555555566666666666
Q ss_pred HHHHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 007461 172 NTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRK 251 (603)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 251 (603)
+..|++..+..+.+..+|..+..+|.+.|++++ ++.|++..+.+.. +...|..+..++.+.|++++|.+.|++..+.+
T Consensus 487 ~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~ 564 (681)
T 2pzi_A 487 TKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG-VISAAFGLARARSAEGDRVGAVRTLDEVPPTS 564 (681)
T ss_dssp HHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTS
T ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc-hHHHHHHHHHHHHHcCCHHHHHHHHHhhcccC
Confidence 666666666555556666666666666666666 6666665554322 44455556666666666666666665544333
Q ss_pred CCCCCccHHHHHHHHHHHhccC
Q 007461 252 LDSTPFSTHMYKILCDSLGKSG 273 (603)
Q Consensus 252 ~~~~~~~~~~~~~li~~~~~~g 273 (603)
+. +..+|..+..++...+
T Consensus 565 P~----~~~a~~~~~~~~~~~~ 582 (681)
T 2pzi_A 565 RH----FTTARLTSAVTLLSGR 582 (681)
T ss_dssp TT----HHHHHHHHHHHTC---
T ss_pred cc----cHHHHHHHHHHHHccC
Confidence 22 2344555555554433
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.98 E-value=2.9e-08 Score=91.85 Aligned_cols=106 Identities=15% Similarity=0.085 Sum_probs=83.2
Q ss_pred CCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcc---hhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCC-C-Chhh
Q 007461 149 LPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIA---LLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIV-L-DSGC 223 (603)
Q Consensus 149 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-p-~~~~ 223 (603)
+.+...+-.+...+.+.|++++|...|+.+....|.+ ..++..+..+|.+.|++++|+..|++..+.... | ....
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 3456667777778888999999999999998887765 778888889999999999999999998875321 1 2345
Q ss_pred HHHHHHHHHH--------cCCHHHHHHHHHHHHhCCCCC
Q 007461 224 YCQIMEAYYK--------IGDSEKVAALFLECKSRKLDS 254 (603)
Q Consensus 224 ~~~ll~~~~~--------~g~~~~a~~~~~~~~~~~~~~ 254 (603)
+..+..++.. .|++++|...|+++....+..
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~ 130 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNH 130 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCc
Confidence 6677778888 889999999998888766543
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.98 E-value=3.1e-07 Score=85.74 Aligned_cols=180 Identities=6% Similarity=-0.013 Sum_probs=107.9
Q ss_pred HHHHhcCCCChHHHHHHHHHHhhCCCCCCCHHhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH--
Q 007461 87 LHGMLKDPQTQELAYDYYNEAKKLPEFRPEKSTLKLLIRYLVQSK--KWDSIVSLSEDFKIYNVLPDAHTCSRLVASC-- 162 (603)
Q Consensus 87 l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~-- 162 (603)
+.+..+.+...+.|+++++.++... +-+...|+..-..+...| ++++++.+++.+...+ +-+..+|+.--..+
T Consensus 39 ~~a~~~~~e~s~~aL~~t~~~L~~n--P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~ 115 (306)
T 3dra_A 39 LLALMKAEEYSERALHITELGINEL--ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQ 115 (306)
T ss_dssp HHHHHHTTCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHC--cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHH
Confidence 3444445555555888888888653 334445777777777777 7888888888777765 44555565554444
Q ss_pred --Hcc---CChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHH--HHHHHHHHHHhCCCCCChhhHHHHHHHHHHcC
Q 007461 163 --VRA---RKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYY--STILVYEKMKSAGIVLDSGCYCQIMEAYYKIG 235 (603)
Q Consensus 163 --~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g 235 (603)
... +++++++.+++.+...++.+..+|+.-.-.+.+.|.++ ++++.++++.+.++. |...|+.-...+.+.|
T Consensus 116 ~~~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~ 194 (306)
T 3dra_A 116 IMELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKK 194 (306)
T ss_dssp HHHHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSG
T ss_pred HHHhccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcc
Confidence 444 56677777777777777777777776666666666666 666666666665443 5555555555454444
Q ss_pred C------HHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccCC
Q 007461 236 D------SEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGR 274 (603)
Q Consensus 236 ~------~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 274 (603)
. ++++.+.++.+...++. |..+|+.+...+.+.|+
T Consensus 195 ~~~~~~~~~eEl~~~~~aI~~~p~----n~SaW~y~~~ll~~~~~ 235 (306)
T 3dra_A 195 HLATDNTIDEELNYVKDKIVKCPQ----NPSTWNYLLGIHERFDR 235 (306)
T ss_dssp GGCCHHHHHHHHHHHHHHHHHCSS----CHHHHHHHHHHHHHTTC
T ss_pred ccchhhhHHHHHHHHHHHHHhCCC----CccHHHHHHHHHHhcCC
Confidence 4 45555555554444332 23345444444444444
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.97 E-value=1.9e-08 Score=89.46 Aligned_cols=168 Identities=10% Similarity=0.016 Sum_probs=102.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH----------------HHHHHHccCChHHHHHHHHHHHhcC
Q 007461 119 TLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSR----------------LVASCVRARKFKIANTLLQVFITDG 182 (603)
Q Consensus 119 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----------------ll~~~~~~~~~~~a~~~~~~~~~~~ 182 (603)
.+-.....+...|++++|+..|+...+.. +.+...|.. +...+.+.|++++|+..|++..+..
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 84 (208)
T 3urz_A 6 EMLQKVSAAIEAGQNGQAVSYFRQTIALN-IDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA 84 (208)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence 34444556667777777777777777654 223444555 6667777777777777777777777
Q ss_pred CcchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCC--HHHHHHHHHHHHhCCCCCCCccHH
Q 007461 183 EIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGD--SEKVAALFLECKSRKLDSTPFSTH 260 (603)
Q Consensus 183 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~--~~~a~~~~~~~~~~~~~~~~~~~~ 260 (603)
|.+..+|..+...|...|++++|+..|++.++.... +..++..+...|...|+ .+.+...++.... +.+ ...
T Consensus 85 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~----~~~-~~~ 158 (208)
T 3urz_A 85 PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD-NLAANIFLGNYYYLTAEQEKKKLETDYKKLSS----PTK-MQY 158 (208)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHC---C----CCH-HHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC----CCc-hhH
Confidence 777777777777777777777777777777765432 55666666666655543 2333444443321 111 112
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHH
Q 007461 261 MYKILCDSLGKSGRAFEALKFFRDMKEKGILEDPS 295 (603)
Q Consensus 261 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 295 (603)
.+..+..++...|++++|+..|++.++. .|+..
T Consensus 159 a~~~~g~~~~~~~~~~~A~~~~~~al~l--~P~~~ 191 (208)
T 3urz_A 159 ARYRDGLSKLFTTRYEKARNSLQKVILR--FPSTE 191 (208)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHTTT--SCCHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCHH
Confidence 3344455556667777777777777654 45543
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.97 E-value=3.6e-08 Score=92.83 Aligned_cols=207 Identities=12% Similarity=0.009 Sum_probs=144.7
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCCC-CHhhHHHHHHHHHhcCCHHHH
Q 007461 309 EVKLAEELFKEAEEKGMLRDPEVCLKLVLMYIEEGLVEKTLDVVESMKNA----KLKI-SDCISCAIVNGFSKRRGYWAA 383 (603)
Q Consensus 309 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~~~~~~a 383 (603)
++++|...+..+ ...|...|++++|.+.|.+..+. +-.+ ...+|+.+...|.+.|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 377777777665 34567788888888888776543 2111 135678888888888999998
Q ss_pred HHHHHHHHHcCC---CC--CHHHHHHHHHHHHhc-CChHHHHHHHHHHHHcCC---Cc--CHhhHHHHHHHHHccCCHHH
Q 007461 384 VKVYEQLISQGC---IP--GQVTYASIINAYCRI-ALYSKAEKVFIEMQQKGF---DK--CVVAYSSMVAMYGKTGRIRD 452 (603)
Q Consensus 384 ~~~~~~m~~~g~---~p--~~~~~~~ll~~~~~~-g~~~~a~~~~~~~~~~~~---~~--~~~~~~~li~~~~~~g~~~~ 452 (603)
+..|++..+... .+ -..++..+...|... |++++|...|++..+... .+ ...++..+...|.+.|++++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 176 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence 888887665311 11 134677888888886 999999999998876421 11 13568889999999999999
Q ss_pred HHHHHHHHHHcCCCCCH------hHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH------HHHHHHHHHH--hcC
Q 007461 453 AMWLVAKMKAKGCEPNV------WIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDKV------SYTTVISAYN--RAR 518 (603)
Q Consensus 453 A~~~~~~m~~~~~~p~~------~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~------~~~~li~~~~--~~g 518 (603)
|...|++..+....... ..|..+..++...|++++|...|++..+ +.|+.. .+..++.+|. ..+
T Consensus 177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--l~p~~~~~~~~~~l~~l~~~~~~~~~~ 254 (292)
T 1qqe_A 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS--EDPNFADSRESNFLKSLIDAVNEGDSE 254 (292)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC--C---------HHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCCCcHHHHHHHHHHHHHHcCCHH
Confidence 99999999885322211 1567778889999999999999999874 344422 2445566665 456
Q ss_pred CHHHHHHHHHHHHH
Q 007461 519 EFDMCVKFYNEFRM 532 (603)
Q Consensus 519 ~~~~a~~~~~~~~~ 532 (603)
++++|+..|+.+..
T Consensus 255 ~~~~A~~~~~~~~~ 268 (292)
T 1qqe_A 255 QLSEHCKEFDNFMR 268 (292)
T ss_dssp THHHHHHHHTTSSC
T ss_pred HHHHHHHHhccCCc
Confidence 78888888876644
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.96 E-value=6.3e-08 Score=78.80 Aligned_cols=123 Identities=14% Similarity=0.190 Sum_probs=48.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCC
Q 007461 370 IVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGR 449 (603)
Q Consensus 370 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 449 (603)
+...+...|++++|+.+++++.+.+ +.+...+..+...+...|++++|...++++.+.+ +.+...+..+...+.+.|+
T Consensus 7 l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~ 84 (136)
T 2fo7_A 7 LGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGD 84 (136)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHHhcC
Confidence 3333444444444444444433322 1223333333444444444444444444443332 2233334444444444444
Q ss_pred HHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007461 450 IRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEM 495 (603)
Q Consensus 450 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 495 (603)
+++|.+.++++.+.. +.+...+..+...+...|++++|...++++
T Consensus 85 ~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 129 (136)
T 2fo7_A 85 YDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKA 129 (136)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence 444444444443321 122333333444444444444444444443
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.96 E-value=3.4e-07 Score=85.51 Aligned_cols=233 Identities=11% Similarity=-0.025 Sum_probs=187.7
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC--ChHHHHHHHHHHHhcCCcchhhHHHHHhhh----hhc---CcH
Q 007461 132 KWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRAR--KFKIANTLLQVFITDGEIALLAFNSAMGGY----NKL---HMY 202 (603)
Q Consensus 132 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~----~~~---~~~ 202 (603)
..++|+.+++.+...+ +-+..+|+.--..+...+ +++++++.++.+....|.+..+|+.-...+ ... +++
T Consensus 48 ~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~ 126 (306)
T 3dra_A 48 YSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDP 126 (306)
T ss_dssp CSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCT
T ss_pred CCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCH
Confidence 3468999999999887 556778888888888888 999999999999999999999998776666 555 789
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCHH--HHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccCC------
Q 007461 203 YSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSE--KVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGR------ 274 (603)
Q Consensus 203 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~--~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~------ 274 (603)
++++.+++.+.+.... |..+|+.-...+.+.|.++ ++.+.++.+.+.++. |-.+|+.-...+...++
T Consensus 127 ~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~----N~sAW~~R~~ll~~l~~~~~~~~ 201 (306)
T 3dra_A 127 YREFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK----NNSAWSHRFFLLFSKKHLATDNT 201 (306)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHSSGGGCCHHH
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHhccccchhhh
Confidence 9999999999987644 8888988888888899888 999999999987765 45689888888888777
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC-HHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 007461 275 AFEALKFFRDMKEKGILEDPSIYASLICSFASITE-VKLAEELFKEAEEKG--MLRDPEVCLKLVLMYIEEGLVEKTLDV 351 (603)
Q Consensus 275 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~-~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~ 351 (603)
++++++.+++++...+ -|...|+-+-..+.+.|. .+.+..+..++.+.+ -..++..+..+.+.|.+.|+.++|.++
T Consensus 202 ~~eEl~~~~~aI~~~p-~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~ 280 (306)
T 3dra_A 202 IDEELNYVKDKIVKCP-QNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTV 280 (306)
T ss_dssp HHHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCC-CCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Confidence 9999999999988743 377888888888877776 444555666655433 245788999999999999999999999
Q ss_pred HHHHHh-CCCCCCHhhHHHHHH
Q 007461 352 VESMKN-AKLKISDCISCAIVN 372 (603)
Q Consensus 352 ~~~~~~-~~~~~~~~~~~~li~ 372 (603)
++.+.+ .++ .....|+..++
T Consensus 281 ~~~l~~~~Dp-ir~~yW~~~~~ 301 (306)
T 3dra_A 281 YDLLKSKYNP-IRSNFWDYQIS 301 (306)
T ss_dssp HHHHHHTTCG-GGHHHHHHHHH
T ss_pred HHHHHhccCh-HHHHHHHHHHh
Confidence 999987 454 34555655443
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.95 E-value=9.2e-08 Score=86.15 Aligned_cols=184 Identities=9% Similarity=0.004 Sum_probs=103.1
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-C-CHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchh---hHHH
Q 007461 117 KSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVL-P-DAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALL---AFNS 191 (603)
Q Consensus 117 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~ 191 (603)
...+..+...+.+.|++++|+..|+.+.+.... | ....+..+..++.+.|++++|+..|+++.+..|.+.. ++..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 344555666677777777777777777765311 1 1345666677777777777777777777776654332 4444
Q ss_pred HHhhhhh------------------cCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC
Q 007461 192 AMGGYNK------------------LHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLD 253 (603)
Q Consensus 192 l~~~~~~------------------~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 253 (603)
+...+.. .|++++|+..|+++++.... +...+...... + .+...+.
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~-~~~a~~a~~~l----~------~~~~~~~----- 147 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPN-SQYTTDATKRL----V------FLKDRLA----- 147 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTT-CTTHHHHHHHH----H------HHHHHHH-----
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcC-ChhHHHHHHHH----H------HHHHHHH-----
Confidence 4444433 45667777777766664211 12222111000 0 0000000
Q ss_pred CCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHccCCHHHHHHHHHHHHHcC
Q 007461 254 STPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEKGILED----PSIYASLICSFASITEVKLAEELFKEAEEKG 324 (603)
Q Consensus 254 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 324 (603)
.....+...|.+.|++++|+..|+++++. .|+ ...+..+..++.+.|+.++|.+.++.+...+
T Consensus 148 ------~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 148 ------KYEYSVAEYYTERGAWVAVVNRVEGMLRD--YPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp ------HHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred ------HHHHHHHHHHHHcCcHHHHHHHHHHHHHH--CcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 01234556666777777777777777654 232 2356666667777777777777777666553
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.93 E-value=1.3e-08 Score=87.82 Aligned_cols=162 Identities=12% Similarity=0.094 Sum_probs=95.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhh-hhh
Q 007461 120 LKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGG-YNK 198 (603)
Q Consensus 120 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~-~~~ 198 (603)
+..+...+.+.|++++|+..++...+.. +.+...+..+...+...|++++|+..++.+....+ +...+..+... +..
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~ 86 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKLELHQ 86 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHHHh
Confidence 4455566666777777777777665543 44556666666667777777777777776665554 44333222211 112
Q ss_pred cCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccCCHHHH
Q 007461 199 LHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEA 278 (603)
Q Consensus 199 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 278 (603)
.+...+|+..+++..+.... +...+..+...+...|++++|...|+++...++.+. +...+..+...+...|+.++|
T Consensus 87 ~~~~~~a~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~--~~~a~~~l~~~~~~~g~~~~A 163 (176)
T 2r5s_A 87 QAAESPELKRLEQELAANPD-NFELACELAVQYNQVGRDEEALELLWNILKVNLGAQ--DGEVKKTFMDILSALGQGNAI 163 (176)
T ss_dssp HHTSCHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTT--TTHHHHHHHHHHHHHCSSCHH
T ss_pred hcccchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccC--hHHHHHHHHHHHHHhCCCCcH
Confidence 22233456666666654322 456666677777777777777777777666554321 123566677777777777777
Q ss_pred HHHHHHHH
Q 007461 279 LKFFRDMK 286 (603)
Q Consensus 279 ~~~~~~m~ 286 (603)
...|++.+
T Consensus 164 ~~~y~~al 171 (176)
T 2r5s_A 164 ASKYRRQL 171 (176)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77776554
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.93 E-value=5e-06 Score=83.99 Aligned_cols=123 Identities=10% Similarity=0.038 Sum_probs=72.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHcc-CCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHH
Q 007461 401 TYASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKT-GRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMH 479 (603)
Q Consensus 401 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 479 (603)
.|...+....+.+..+.|..+|+.. +.. ..+...|......-.+. ++.+.|..+|+...+. .+-+...|...++..
T Consensus 288 lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~-~~~~~~~~~~yid~e 364 (493)
T 2uy1_A 288 LRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLK-HPDSTLLKEEFFLFL 364 (493)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHH-CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 4455555555566677777777777 221 12333443222222222 3577778888777764 222344455566666
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007461 480 GRAKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNRAREFDMCVKFYNEFR 531 (603)
Q Consensus 480 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 531 (603)
...|+.+.|..+|+++. .....|...+..=...|+.+.+..++++..
T Consensus 365 ~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 365 LRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKM 411 (493)
T ss_dssp HHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 67777777777777762 134556666665566677777777777665
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=3.3e-08 Score=92.80 Aligned_cols=166 Identities=11% Similarity=0.041 Sum_probs=95.9
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhh
Q 007461 116 EKSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGG 195 (603)
Q Consensus 116 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 195 (603)
+...+..+...+.+.|++++|+..|+...+.. +.+...+..+...+.+.|++++|...++++....+............
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~ 194 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIE 194 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHH
Confidence 34455556666666666666666666666554 44555666666666666666666666666655544333333333333
Q ss_pred hhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccCCH
Q 007461 196 YNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRA 275 (603)
Q Consensus 196 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 275 (603)
+...++.++|+..+++..+... .+...+..+...+...|++++|...|+++...++... +...+..++..+...|+.
T Consensus 195 l~~~~~~~~a~~~l~~al~~~P-~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~--~~~a~~~l~~~~~~~g~~ 271 (287)
T 3qou_A 195 LLXQAADTPEIQQLQQQVAENP-EDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAA--DGQTRXTFQEILAALGTG 271 (287)
T ss_dssp HHHHHTSCHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGG--GGHHHHHHHHHHHHHCTT
T ss_pred HHhhcccCccHHHHHHHHhcCC-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccc--cchHHHHHHHHHHHcCCC
Confidence 5555556666666666655432 2455566666666666666666666666665543321 134566666666666666
Q ss_pred HHHHHHHHHH
Q 007461 276 FEALKFFRDM 285 (603)
Q Consensus 276 ~~A~~~~~~m 285 (603)
++|...|++.
T Consensus 272 ~~a~~~~r~a 281 (287)
T 3qou_A 272 DALASXYRRQ 281 (287)
T ss_dssp CHHHHHHHHH
T ss_pred CcHHHHHHHH
Confidence 6666666554
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.89 E-value=7e-08 Score=85.69 Aligned_cols=96 Identities=13% Similarity=0.083 Sum_probs=57.0
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHH----------------HHhhhhhcCcHHHHHHHHHHHHhCCCC
Q 007461 155 CSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNS----------------AMGGYNKLHMYYSTILVYEKMKSAGIV 218 (603)
Q Consensus 155 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----------------l~~~~~~~~~~~~a~~~~~~m~~~~~~ 218 (603)
+......+...|++++|+..|++.....|.+..+|.. +...|.+.|++++|+..|++.++....
T Consensus 7 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 86 (208)
T 3urz_A 7 MLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPN 86 (208)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
Confidence 3344556678899999999999998887767766666 555555555555555555555443221
Q ss_pred CChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 007461 219 LDSGCYCQIMEAYYKIGDSEKVAALFLECKSRK 251 (603)
Q Consensus 219 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 251 (603)
+...+..+...+...|++++|...|++....+
T Consensus 87 -~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 118 (208)
T 3urz_A 87 -NVDCLEACAEMQVCRGQEKDALRMYEKILQLE 118 (208)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred -CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 34444455555555555555555555544433
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.87 E-value=1.8e-08 Score=106.86 Aligned_cols=153 Identities=7% Similarity=-0.107 Sum_probs=77.6
Q ss_pred HhcCCHHHHHHHHHHHH--------hCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhc
Q 007461 128 VQSKKWDSIVSLSEDFK--------IYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKL 199 (603)
Q Consensus 128 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 199 (603)
...|++++|++.++... +.. +.+...+..+...+...|++++|+..|+++.+..+.+..+|..+..+|...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence 44555555555555554 222 233444555555555555555555555555555555555555555555555
Q ss_pred CcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccCCHHHHH
Q 007461 200 HMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEAL 279 (603)
Q Consensus 200 ~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 279 (603)
|++++|+..|++..+.... +...+..+..+|.+.|++++ .+.|++..+.++. +..+|..+..++.+.|++++|+
T Consensus 481 g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~----~~~a~~~lg~~~~~~g~~~~A~ 554 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG----VISAAFGLARARSAEGDRVGAV 554 (681)
T ss_dssp TCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc----hHHHHHHHHHHHHHcCCHHHHH
Confidence 5555555555555543221 34445555555555555555 5555555444332 1234555555555555555555
Q ss_pred HHHHHHHH
Q 007461 280 KFFRDMKE 287 (603)
Q Consensus 280 ~~~~~m~~ 287 (603)
+.|++..+
T Consensus 555 ~~~~~al~ 562 (681)
T 2pzi_A 555 RTLDEVPP 562 (681)
T ss_dssp HHHHTSCT
T ss_pred HHHHhhcc
Confidence 55555443
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.85 E-value=4.2e-08 Score=93.19 Aligned_cols=159 Identities=9% Similarity=-0.004 Sum_probs=79.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCC---CC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCc--CHhhHHH
Q 007461 371 VNGFSKRRGYWAAVKVYEQLISQGC---IP--GQVTYASIINAYCRIALYSKAEKVFIEMQQK----GFDK--CVVAYSS 439 (603)
Q Consensus 371 i~~~~~~~~~~~a~~~~~~m~~~g~---~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~~--~~~~~~~ 439 (603)
...|...|++++|...|.+..+... .+ -..+|..+...|...|++++|...|++..+. | .+ ...++..
T Consensus 43 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g-~~~~~a~~~~~ 121 (307)
T 2ifu_A 43 AVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENG-TPDTAAMALDR 121 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTT-CHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcC-CHHHHHHHHHH
Confidence 3445566666666666665543210 00 0234555556666666666666666655432 1 11 1234555
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHcCC---CC--CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC-HHHHHH
Q 007461 440 MVAMYGKTGRIRDAMWLVAKMKAKGC---EP--NVWIYNSLMDMHGRAKNLRQVEKLWKEMERR----KVTPD-KVSYTT 509 (603)
Q Consensus 440 li~~~~~~g~~~~A~~~~~~m~~~~~---~p--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p~-~~~~~~ 509 (603)
+...|.+ |++++|+..+++..+..- .+ ...++..+...|...|++++|+..|++..+. +..+. ...+..
T Consensus 122 lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 200 (307)
T 2ifu_A 122 AGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIA 200 (307)
T ss_dssp HHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHH
Confidence 5555555 666666666665543200 00 0234555555556666666666666555432 11111 113444
Q ss_pred HHHHHHhcCCHHHHHHHHHHHH
Q 007461 510 VISAYNRAREFDMCVKFYNEFR 531 (603)
Q Consensus 510 li~~~~~~g~~~~a~~~~~~~~ 531 (603)
+..++...|++++|...|++..
T Consensus 201 ~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 201 QVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHHHHh
Confidence 4444555566666666665555
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.84 E-value=5.3e-07 Score=80.20 Aligned_cols=177 Identities=12% Similarity=0.028 Sum_probs=106.3
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccC----CHHHHHHHH
Q 007461 382 AAVKVYEQLISQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTG----RIRDAMWLV 457 (603)
Q Consensus 382 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g----~~~~A~~~~ 457 (603)
+|++.|++..+.| +...+..+...|...+++++|...|++..+.| +...+..|...|.. + ++++|.+.|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 3455555555543 44555556666666666667776666666654 34555566666655 4 667777777
Q ss_pred HHHHHcCCCCCHhHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHh----cCCHHHHHHHHH
Q 007461 458 AKMKAKGCEPNVWIYNSLMDMHGR----AKNLRQVEKLWKEMERRKVT-PDKVSYTTVISAYNR----AREFDMCVKFYN 528 (603)
Q Consensus 458 ~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~-p~~~~~~~li~~~~~----~g~~~~a~~~~~ 528 (603)
++..+.| +...+..|...|.. .+++++|.+.|++..+.+.. .+...+..|...|.. .+++++|+.+|+
T Consensus 77 ~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 153 (212)
T 3rjv_A 77 EKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK 153 (212)
T ss_dssp HHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 7666543 45555666666655 66777777777777654321 014556666666666 567777777777
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHcc-C-----CHHHHHHHHHHHHhCCC
Q 007461 529 EFRMNGGVIDRAIAGIMVGVFSKL-S-----QIEELVKLLQDMKSEGT 570 (603)
Q Consensus 529 ~~~~~~~~~~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~m~~~g~ 570 (603)
+..+.+ .+...+..|...|... | ++++|..++++..+.|.
T Consensus 154 ~A~~~~--~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 154 GSSSLS--RTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHTS--CTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHcC--CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 776651 1333455555555432 2 67777777777776653
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=2.8e-08 Score=82.99 Aligned_cols=133 Identities=8% Similarity=-0.119 Sum_probs=67.5
Q ss_pred HHHHHHHHHhhCCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHH
Q 007461 99 LAYDYYNEAKKLPEFRPEKSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVF 178 (603)
Q Consensus 99 ~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 178 (603)
.|+..++.+.... +-+...+-.+...|.+.|++++|++.|++..+.+ +.+..+|..+...+...|++++|+..|++.
T Consensus 15 ~ai~~~~~a~~~~--p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~a 91 (150)
T 4ga2_A 15 RYIASVQGSTPSP--RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTDKAVECYRRS 91 (150)
T ss_dssp HHHHHHHHHSCSH--HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhcccC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchHHHHHHHHHH
Confidence 3555555554321 1122234445555556666666666666555554 344555555555555556666666666655
Q ss_pred HhcCCcchhhHHHHHhhhhhcCcHHHHHHH-HHHHHhCCCCCChhhHHHHHHHHHHcC
Q 007461 179 ITDGEIALLAFNSAMGGYNKLHMYYSTILV-YEKMKSAGIVLDSGCYCQIMEAYYKIG 235 (603)
Q Consensus 179 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~-~~~m~~~~~~p~~~~~~~ll~~~~~~g 235 (603)
.+..|.+..+|..+...|.+.|++++|.+. +++..+..+. ++.+|......+.+.|
T Consensus 92 l~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~-~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 92 VELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPG-SPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTCC
T ss_pred HHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhC
Confidence 555555555555555555555555544433 3444443211 3344444444444333
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=1e-08 Score=85.60 Aligned_cols=108 Identities=9% Similarity=-0.006 Sum_probs=48.9
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHHHH
Q 007461 130 SKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVY 209 (603)
Q Consensus 130 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 209 (603)
.|++++|+..++...... +.+...+-.+...|.+.|++++|++.|++..+..|.+..+|..+...|.+.|++++|+..|
T Consensus 10 ~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~ 88 (150)
T 4ga2_A 10 KADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVECY 88 (150)
T ss_dssp HHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHHHH
Confidence 344445555444443221 1122233344444555555555555555555544444555555555555555555555555
Q ss_pred HHHHhCCCCCChhhHHHHHHHHHHcCCHHH
Q 007461 210 EKMKSAGIVLDSGCYCQIMEAYYKIGDSEK 239 (603)
Q Consensus 210 ~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~ 239 (603)
++..+.... +..++..+...|.+.|+.++
T Consensus 89 ~~al~~~p~-~~~~~~~la~~~~~~~~~~~ 117 (150)
T 4ga2_A 89 RRSVELNPT-QKDLVLKIAELLCKNDVTDG 117 (150)
T ss_dssp HHHHHHCTT-CHHHHHHHHHHHHHHCSSSS
T ss_pred HHHHHhCCC-CHHHHHHHHHHHHHcCChHH
Confidence 544443211 33444444444444444443
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.82 E-value=4.2e-07 Score=81.77 Aligned_cols=188 Identities=5% Similarity=-0.126 Sum_probs=127.3
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcc---hhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCCh--hhHHH
Q 007461 152 AHTCSRLVASCVRARKFKIANTLLQVFITDGEIA---LLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDS--GCYCQ 226 (603)
Q Consensus 152 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~--~~~~~ 226 (603)
...+-.+...+.+.|++++|+..|+.+....|.+ ..++..+..+|.+.|++++|+..|+++.+....... ..+..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 3445556667888899999999999998876643 467888899999999999999999999875432111 13444
Q ss_pred HHHHHHH------------------cCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 007461 227 IMEAYYK------------------IGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEK 288 (603)
Q Consensus 227 ll~~~~~------------------~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 288 (603)
+..++.+ .|+.++|...|+++....+.... ++...... ..+...+.
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~----a~~a~~~l----------~~~~~~~~-- 147 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQY----TTDATKRL----------VFLKDRLA-- 147 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTT----HHHHHHHH----------HHHHHHHH--
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChh----HHHHHHHH----------HHHHHHHH--
Confidence 5555544 35666666666666665544321 22111100 00000000
Q ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC
Q 007461 289 GILEDPSIYASLICSFASITEVKLAEELFKEAEEKGMLR--DPEVCLKLVLMYIEEGLVEKTLDVVESMKNAKLK 361 (603)
Q Consensus 289 g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 361 (603)
.....+...+.+.|++++|...++.+.+..... ....+..+..+|.+.|+.++|.+.++.+...++.
T Consensus 148 ------~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~ 216 (225)
T 2yhc_A 148 ------KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSN 216 (225)
T ss_dssp ------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSC
T ss_pred ------HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC
Confidence 112345667889999999999999999875321 1356888999999999999999999999887653
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.81 E-value=4.1e-08 Score=84.62 Aligned_cols=161 Identities=9% Similarity=0.022 Sum_probs=127.7
Q ss_pred hhHHHHHHhcCCCChHHHHHHHHHHhhCCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-
Q 007461 83 FDSFLHGMLKDPQTQELAYDYYNEAKKLPEFRPEKSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVAS- 161 (603)
Q Consensus 83 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~- 161 (603)
+......+...++..+ |...|+.+.+.. +.+...+..+...+.+.|++++|+..++...+.. |+...+..+...
T Consensus 9 ~~~~a~~~~~~g~~~~-A~~~~~~al~~~--P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~ 83 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQ-ALNVIQTLSDEL--QSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLE 83 (176)
T ss_dssp HHHHHHHHHHTTCHHH-HHHHHHTSCHHH--HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHH-HHHHHHHHHHHC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHH
Confidence 4445556677788776 999999987653 4567889999999999999999999999987665 355444333222
Q ss_pred HHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCC-ChhhHHHHHHHHHHcCCHHHH
Q 007461 162 CVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVL-DSGCYCQIMEAYYKIGDSEKV 240 (603)
Q Consensus 162 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~a 240 (603)
+...++...|...+++.....|.+..++..+...+...|++++|+..|+++.+....+ +...+..+...+...|+.++|
T Consensus 84 ~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A 163 (176)
T 2r5s_A 84 LHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI 163 (176)
T ss_dssp HHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred HHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence 2222334457899999999989899999999999999999999999999999876543 356888999999999999999
Q ss_pred HHHHHHHH
Q 007461 241 AALFLECK 248 (603)
Q Consensus 241 ~~~~~~~~ 248 (603)
...|++..
T Consensus 164 ~~~y~~al 171 (176)
T 2r5s_A 164 ASKYRRQL 171 (176)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998654
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.80 E-value=7.9e-08 Score=90.17 Aligned_cols=167 Identities=9% Similarity=-0.036 Sum_probs=116.2
Q ss_pred CCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHH-HH
Q 007461 149 LPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYC-QI 227 (603)
Q Consensus 149 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~-~l 227 (603)
+.+...+..+...+...|++++|...|++.....|.+..++..+...+.+.|++++|...++++... .|+..... ..
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~~ 191 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLVA 191 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHHH
Confidence 4455666777777888888888888888888888888888888888888888888888888877664 34433222 22
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHc
Q 007461 228 MEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEKGILE-DPSIYASLICSFAS 306 (603)
Q Consensus 228 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~ 306 (603)
...+.+.++.+.|.+.|++....++. +...+..+...+...|++++|++.|+++.+..... +...+..++..+..
T Consensus 192 ~~~l~~~~~~~~a~~~l~~al~~~P~----~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~ 267 (287)
T 3qou_A 192 QIELLXQAADTPEIQQLQQQVAENPE----DAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAA 267 (287)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHH
T ss_pred HHHHHhhcccCccHHHHHHHHhcCCc----cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHH
Confidence 23355667777777777777666543 34567777888888888888888888777653221 24566667777777
Q ss_pred cCCHHHHHHHHHHHH
Q 007461 307 ITEVKLAEELFKEAE 321 (603)
Q Consensus 307 ~g~~~~a~~~~~~~~ 321 (603)
.|+.+++...+++..
T Consensus 268 ~g~~~~a~~~~r~al 282 (287)
T 3qou_A 268 LGTGDALASXYRRQL 282 (287)
T ss_dssp HCTTCHHHHHHHHHH
T ss_pred cCCCCcHHHHHHHHH
Confidence 777666666665543
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.78 E-value=1.3e-06 Score=77.73 Aligned_cols=176 Identities=14% Similarity=0.082 Sum_probs=93.5
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccC----CHHHHH
Q 007461 204 STILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSG----RAFEAL 279 (603)
Q Consensus 204 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g----~~~~A~ 279 (603)
+|++.|++..+.| ++..+..+...|...+++++|.+.|++..+.+. ..++..|...|.. + ++++|+
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~------~~a~~~lg~~y~~-~g~~~~~~~A~ 73 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGD------GDALALLAQLKIR-NPQQADYPQAR 73 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTC------HHHHHHHHHHTTS-STTSCCHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCC------HHHHHHHHHHHHc-CCCCCCHHHHH
Confidence 3445555555543 445566666666666666666666666655432 2355556666655 4 566666
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHH----cCCHHHHHH
Q 007461 280 KFFRDMKEKGILEDPSIYASLICSFAS----ITEVKLAEELFKEAEEKGML-RDPEVCLKLVLMYIE----EGLVEKTLD 350 (603)
Q Consensus 280 ~~~~~m~~~g~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~g~~~~a~~ 350 (603)
+.|++..+.| +...+..+...+.. .++.++|.+++++..+.+.. .++..+..|..+|.. .+++++|..
T Consensus 74 ~~~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~ 150 (212)
T 3rjv_A 74 QLAEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASE 150 (212)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHH
T ss_pred HHHHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 6666665543 44455555555544 55666666666666554411 014555555555555 555666666
Q ss_pred HHHHHHhCCCCCCHhhHHHHHHHHHhc-C-----CHHHHHHHHHHHHHcC
Q 007461 351 VVESMKNAKLKISDCISCAIVNGFSKR-R-----GYWAAVKVYEQLISQG 394 (603)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~li~~~~~~-~-----~~~~a~~~~~~m~~~g 394 (603)
.|++..+.+. +...+..|...|... | +.++|+..|++..+.|
T Consensus 151 ~~~~A~~~~~--~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 151 YFKGSSSLSR--TGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHHHTSC--TTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCC--CHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 6665554411 122344444444332 1 4555555555555544
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.78 E-value=1.1e-07 Score=98.82 Aligned_cols=156 Identities=7% Similarity=-0.099 Sum_probs=116.4
Q ss_pred CCChHHHHHHHHHHhhCCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHH
Q 007461 94 PQTQELAYDYYNEAKKLPEFRPEKSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANT 173 (603)
Q Consensus 94 ~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 173 (603)
++..+ |.+.|+++.+.. +.+...|..+...+.+.|++++|+..+++..+.. +.+..++..+...+...|++++|.+
T Consensus 3 g~~~~-A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~ 78 (568)
T 2vsy_A 3 ADGPR-ELLQLRAAVRHR--PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAV 78 (568)
T ss_dssp ---------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ccHHH-HHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 34444 888888887653 4457788888899999999999999999988775 5567888888888999999999999
Q ss_pred HHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHc---CCHHHHHHHHHHHHhC
Q 007461 174 LLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKI---GDSEKVAALFLECKSR 250 (603)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~---g~~~~a~~~~~~~~~~ 250 (603)
.+++..+..+.+..++..+...|.+.|++++|.+.|++..+.... +...+..+...+... |+.++|.+.+++..+.
T Consensus 79 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 79 LLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE-EPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 999988888888888999999999999999999999988876432 567788888888888 8999999999888877
Q ss_pred CCCC
Q 007461 251 KLDS 254 (603)
Q Consensus 251 ~~~~ 254 (603)
++..
T Consensus 158 ~p~~ 161 (568)
T 2vsy_A 158 GVGA 161 (568)
T ss_dssp TCCC
T ss_pred CCcc
Confidence 6553
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.78 E-value=1.6e-07 Score=89.10 Aligned_cols=127 Identities=11% Similarity=0.067 Sum_probs=67.8
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCC--ccHHHHHHHHHHHhccCCHHHHHHHHHHHHHCC---CCCC--HHHHHHHH
Q 007461 229 EAYYKIGDSEKVAALFLECKSRKLDSTP--FSTHMYKILCDSLGKSGRAFEALKFFRDMKEKG---ILED--PSIYASLI 301 (603)
Q Consensus 229 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---~~p~--~~~~~~ll 301 (603)
..|...|++++|...|.+.......... .-..+|+.+...|...|++++|++.|++..+.- -.+. ..++..+.
T Consensus 44 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg 123 (307)
T 2ifu_A 44 VAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAG 123 (307)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3455666666666666554432111000 113456777777777778888777777665321 0111 23455555
Q ss_pred HHHHccCCHHHHHHHHHHHHHcCCCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007461 302 CSFASITEVKLAEELFKEAEEKGMLR-----DPEVCLKLVLMYIEEGLVEKTLDVVESMK 356 (603)
Q Consensus 302 ~~~~~~g~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 356 (603)
..+.. |++++|...+++..+..... ...++..+...|.+.|++++|...|++..
T Consensus 124 ~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 182 (307)
T 2ifu_A 124 KLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEK 182 (307)
T ss_dssp HHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 56655 67777766666655431100 12344555555666666666665555544
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.78 E-value=1.6e-07 Score=97.72 Aligned_cols=152 Identities=9% Similarity=-0.124 Sum_probs=84.7
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHHHHH
Q 007461 131 KKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYE 210 (603)
Q Consensus 131 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 210 (603)
|++++|+..+++..+.. +.+...+..+...+...|++++|.+.+++..+..+.+..+|..+...|...|++++|.+.++
T Consensus 3 g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 81 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ 81 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 55666666666665543 33456666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhcc---CCHHHHHHHHHHHHH
Q 007461 211 KMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKS---GRAFEALKFFRDMKE 287 (603)
Q Consensus 211 ~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~m~~ 287 (603)
+..+.... +...+..+...|.+.|++++|.+.|++..+.++. +...+..+...+... |++++|.+.+++..+
T Consensus 82 ~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 82 QASDAAPE-HPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE----EPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 66654322 4556666666666666666666666666555432 234566666666666 666666666666665
Q ss_pred C
Q 007461 288 K 288 (603)
Q Consensus 288 ~ 288 (603)
.
T Consensus 157 ~ 157 (568)
T 2vsy_A 157 Q 157 (568)
T ss_dssp H
T ss_pred c
Confidence 4
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.74 E-value=4.7e-06 Score=78.58 Aligned_cols=161 Identities=7% Similarity=-0.014 Sum_probs=103.6
Q ss_pred HHHHhcCCCChHHHHHHHHHHhhCCCCCCCHHhHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcc
Q 007461 87 LHGMLKDPQTQELAYDYYNEAKKLPEFRPEKSTLKLLIRYLVQSK-KWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRA 165 (603)
Q Consensus 87 l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 165 (603)
++++.+.+...+.|+++++.++... +-+...|+..-..+...| .+++++.+++.+...+ +-+..+|+.-...+.+.
T Consensus 60 ~r~~~~~~e~se~AL~lt~~~L~~n--P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l 136 (349)
T 3q7a_A 60 FRAIAAKEEKSERALELTEIIVRMN--PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRI 136 (349)
T ss_dssp HHHHHHTTCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHhC--chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHh
Confidence 3444444444444888888888753 334556788777777777 4888888888888776 56677777776666665
Q ss_pred -C-ChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHH--------HHHHHHHHHHhCCCCCChhhHHHHHHHHHHcC
Q 007461 166 -R-KFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYY--------STILVYEKMKSAGIVLDSGCYCQIMEAYYKIG 235 (603)
Q Consensus 166 -~-~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g 235 (603)
+ ++++++++++.+...++.+..+|+.-.-.+.+.+.++ ++++.++++++.++. |...|+.....+.+.+
T Consensus 137 ~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~ 215 (349)
T 3q7a_A 137 SPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRP 215 (349)
T ss_dssp CCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTST
T ss_pred cCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcc
Confidence 5 7778888888888777777778777666666665555 566666666655433 5555555555555555
Q ss_pred C-------HHHHHHHHHHHHhCC
Q 007461 236 D-------SEKVAALFLECKSRK 251 (603)
Q Consensus 236 ~-------~~~a~~~~~~~~~~~ 251 (603)
. ++++.+.+++....+
T Consensus 216 ~~~~~~~~~~eELe~~~~aI~~~ 238 (349)
T 3q7a_A 216 GAETSSRSLQDELIYILKSIHLI 238 (349)
T ss_dssp TCCCCHHHHHHHHHHHHHHHHHC
T ss_pred ccccchHHHHHHHHHHHHHHHhC
Confidence 4 344444444444433
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.70 E-value=7.4e-06 Score=77.24 Aligned_cols=235 Identities=9% Similarity=-0.054 Sum_probs=176.2
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC-ChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhc-C-cHHHHHH
Q 007461 131 KKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRAR-KFKIANTLLQVFITDGEIALLAFNSAMGGYNKL-H-MYYSTIL 207 (603)
Q Consensus 131 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-~~~~a~~ 207 (603)
+..++|+++++.+...+ +-+..+|+.--..+...| ++++++..++.+....+.+..+|+.-...+... + +++++++
T Consensus 68 e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~ 146 (349)
T 3q7a_A 68 EKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIE 146 (349)
T ss_dssp CCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHH
T ss_pred CCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHH
Confidence 34568999999999887 566778888888887888 599999999999999999999999988888777 7 8899999
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHHHHcCCHH--------HHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccCC-----
Q 007461 208 VYEKMKSAGIVLDSGCYCQIMEAYYKIGDSE--------KVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGR----- 274 (603)
Q Consensus 208 ~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~--------~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----- 274 (603)
+++++.+.... |..+|+.-...+.+.|.++ ++.+.++++.+.++. |-.+|+.....+.+.++
T Consensus 147 ~~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~----N~SAW~~R~~lL~~l~~~~~~~ 221 (349)
T 3q7a_A 147 YIHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR----NNSAWGWRWYLRVSRPGAETSS 221 (349)
T ss_dssp HHHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHTTSTTCCCCH
T ss_pred HHHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHhccccccch
Confidence 99999987644 7778887666666666655 899999999887754 45689999999888886
Q ss_pred --HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCH--------------------HHHHHHHHHHHHcC-----CCC
Q 007461 275 --AFEALKFFRDMKEKGILEDPSIYASLICSFASITEV--------------------KLAEELFKEAEEKG-----MLR 327 (603)
Q Consensus 275 --~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~--------------------~~a~~~~~~~~~~~-----~~~ 327 (603)
++++++.+++.+... .-|...|+-+-..+.+.|.. ....+....+...+ ..+
T Consensus 222 ~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (349)
T 3q7a_A 222 RSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLP 300 (349)
T ss_dssp HHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSC
T ss_pred HHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCC
Confidence 799999999998863 22677777766666555442 33333333333222 146
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 007461 328 DPEVCLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVN 372 (603)
Q Consensus 328 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 372 (603)
++.....|++.|...|+.++|.++++.+.+.--+....-|+-.+.
T Consensus 301 s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~~~~ 345 (349)
T 3q7a_A 301 VPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEFRRR 345 (349)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHHHHH
Confidence 788999999999999999999999999975422234444554443
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.69 E-value=3e-06 Score=79.63 Aligned_cols=129 Identities=11% Similarity=0.009 Sum_probs=68.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCCcc--HHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCC-CC----HHHHHHH
Q 007461 228 MEAYYKIGDSEKVAALFLECKSRKLDSTPFS--THMYKILCDSLGKSGRAFEALKFFRDMKEKGIL-ED----PSIYASL 300 (603)
Q Consensus 228 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~~~~~l 300 (603)
+..+...|++++|..++++............ ...+..+...+...|++++|+..|++....... ++ ..+++.+
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l 161 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI 161 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 5556677777777777777665332111000 112334556666666777777777777653222 12 1245666
Q ss_pred HHHHHccCCHHHHHHHHHHHHHc-----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007461 301 ICSFASITEVKLAEELFKEAEEK-----GMLR-DPEVCLKLVLMYIEEGLVEKTLDVVESMK 356 (603)
Q Consensus 301 l~~~~~~g~~~~a~~~~~~~~~~-----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 356 (603)
...+...|++++|...++++.+. +..+ ...++..+...|.+.|++++|.+.+++..
T Consensus 162 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al 223 (293)
T 3u3w_A 162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAI 223 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 66666666666666666666531 1000 12244455555555555555555555443
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.66 E-value=5.5e-06 Score=77.83 Aligned_cols=163 Identities=9% Similarity=0.015 Sum_probs=110.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcC-CCcCH----hhHHHHHHHHHccCCHHHHHHHHHHHHHcCCC-CC----HhHHHH
Q 007461 405 IINAYCRIALYSKAEKVFIEMQQKG-FDKCV----VAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCE-PN----VWIYNS 474 (603)
Q Consensus 405 ll~~~~~~g~~~~a~~~~~~~~~~~-~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~----~~~~~~ 474 (603)
.+..+...|++++|..++++..+.. ..|+. ..+..+...+...|++++|...+++..+.... ++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 3556677788888888888876642 12221 13334666666777888888888888763222 22 235788
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHh----C-CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC-HHHHH
Q 007461 475 LMDMHGRAKNLRQVEKLWKEMER----R-KVTPDK-VSYTTVISAYNRAREFDMCVKFYNEFRMN----GGVID-RAIAG 543 (603)
Q Consensus 475 li~~~~~~g~~~~a~~~~~~m~~----~-~~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~~~-~~~~~ 543 (603)
+...|...|++++|...++++.+ . +..+.. .++..+...|.+.|++++|++.+++..+. +..+. ...|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 88888888888888888888763 1 111222 35778888888889999998888877643 22222 45778
Q ss_pred HHHHHHHccC-CHHHHHHHHHHHHh
Q 007461 544 IMVGVFSKLS-QIEELVKLLQDMKS 567 (603)
Q Consensus 544 ~l~~~~~~~g-~~~~A~~~~~~m~~ 567 (603)
.+..+|.+.| .+++|.+.+++...
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 8888888888 46888888887754
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.65 E-value=9e-07 Score=74.99 Aligned_cols=128 Identities=13% Similarity=0.017 Sum_probs=85.9
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhh
Q 007461 118 STLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYN 197 (603)
Q Consensus 118 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 197 (603)
..+..+...+...|++++|...++...+.. +.+..++..+...+...|++++|...+++.....+.+..+|..+...+.
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 356666677777778888888777777654 4456677777777777777777777777777776667777777777777
Q ss_pred hcCcHHHHHHHHHHHHhCCCCCChhhHH--HHHHHHHHcCCHHHHHHHHHHH
Q 007461 198 KLHMYYSTILVYEKMKSAGIVLDSGCYC--QIMEAYYKIGDSEKVAALFLEC 247 (603)
Q Consensus 198 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~--~ll~~~~~~g~~~~a~~~~~~~ 247 (603)
..|++++|...|++..+.... +...+. .++..+.+.|++++|.+.++..
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 777777777777777664322 333332 2333355667777776666554
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.65 E-value=6.5e-07 Score=71.91 Aligned_cols=96 Identities=9% Similarity=-0.022 Sum_probs=59.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhh
Q 007461 119 TLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNK 198 (603)
Q Consensus 119 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 198 (603)
.+......+.+.|++++|+..|++..+.+ +.+..+|..+..++.+.|++++|+..+++..+.++.+..+|..+..+|..
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~ 93 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVA 93 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 45555666666666666666666666554 44556666666666666666666666666666666666666666666666
Q ss_pred cCcHHHHHHHHHHHHhC
Q 007461 199 LHMYYSTILVYEKMKSA 215 (603)
Q Consensus 199 ~~~~~~a~~~~~~m~~~ 215 (603)
.|++++|++.|++.++.
T Consensus 94 ~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 94 MREWSKAQRAYEDALQV 110 (126)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 66666666666666553
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.64 E-value=1.5e-06 Score=77.30 Aligned_cols=128 Identities=13% Similarity=0.054 Sum_probs=90.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhh
Q 007461 119 TLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNK 198 (603)
Q Consensus 119 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 198 (603)
.+..+...+...|++++|+..+++.. .|+..++..+...+...|++++|...+++.....+.+..+|..+...|..
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH
Confidence 34556667777888888888887663 56777788888888888888888888888877777777778888888888
Q ss_pred cCcHHHHHHHHHHHHhCCCCCCh----------------hhHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 007461 199 LHMYYSTILVYEKMKSAGIVLDS----------------GCYCQIMEAYYKIGDSEKVAALFLECKSRK 251 (603)
Q Consensus 199 ~~~~~~a~~~~~~m~~~~~~p~~----------------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 251 (603)
.|++++|++.|++..+.... +. ..+..+..+|.+.|++++|.+.|+......
T Consensus 84 ~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRG-NQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTT-CSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred cccHHHHHHHHHHHHHhCCC-ccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 88888888888777764321 11 455556666666666666666666665544
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.60 E-value=1.4e-06 Score=69.58 Aligned_cols=98 Identities=13% Similarity=0.047 Sum_probs=62.7
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhh
Q 007461 117 KSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGY 196 (603)
Q Consensus 117 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 196 (603)
...+..+...+...|++++|..+++++.+.. +.+..++..+...+...|++++|...++++....+.+..++..+...+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 87 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 4456666666667777777777777666554 345556666666666666666666666666665555566666666666
Q ss_pred hhcCcHHHHHHHHHHHHhC
Q 007461 197 NKLHMYYSTILVYEKMKSA 215 (603)
Q Consensus 197 ~~~~~~~~a~~~~~~m~~~ 215 (603)
...|++++|...|+++.+.
T Consensus 88 ~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHh
Confidence 6666666666666666554
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.59 E-value=2.4e-06 Score=77.80 Aligned_cols=189 Identities=8% Similarity=-0.059 Sum_probs=123.0
Q ss_pred ccCChHHHHHHHHHHHhcCCcchhhHHHH-------HhhhhhcCcHHHHHHHHHHHHhCCCCCC----------------
Q 007461 164 RARKFKIANTLLQVFITDGEIALLAFNSA-------MGGYNKLHMYYSTILVYEKMKSAGIVLD---------------- 220 (603)
Q Consensus 164 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~a~~~~~~m~~~~~~p~---------------- 220 (603)
..++...|.+.|.++...+|.....|+.+ ...+.+.++..+++..+..-.+ +.|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccccc
Confidence 46888888888888888888888888888 5666666666666666655544 1121
Q ss_pred ------hhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCC-
Q 007461 221 ------SGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEKGILED- 293 (603)
Q Consensus 221 ------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~- 293 (603)
..........+...|++++|.++|+.+...++ .+. ....+...+.+.+++++|+..|+...... .|.
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p----~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~ 169 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGS----EHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFL 169 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTC----HHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC----chH-HHHHHHHHHHHcCCHHHHHHHHHHhhccC-Cccc
Confidence 11233456677788888888888877665432 123 55566667888888888888887544321 111
Q ss_pred -HHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 007461 294 -PSIYASLICSFASITEVKLAEELFKEAEEKGMLRD--PEVCLKLVLMYIEEGLVEKTLDVVESMKNAKL 360 (603)
Q Consensus 294 -~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 360 (603)
...+..+..++...|++++|...|++.......|. .........++.+.|+.++|..+|+++...++
T Consensus 170 ~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P 239 (282)
T 4f3v_A 170 AGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHP 239 (282)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 23556666677777777777777777764332132 33455566666777777777777777766554
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.58 E-value=5.3e-07 Score=79.45 Aligned_cols=157 Identities=8% Similarity=-0.012 Sum_probs=74.9
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHh------cCCcchhhHHHHHhhhhhcCcH
Q 007461 129 QSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFIT------DGEIALLAFNSAMGGYNKLHMY 202 (603)
Q Consensus 129 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~~ 202 (603)
..|++++|.++++.+.. .......++..+...+...|++++|...+++... ..+....++..+...|...|++
T Consensus 4 ~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 4 EAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ---CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 45566666664433322 1112344555555556666666666666655544 1122344555555666666666
Q ss_pred HHHHHHHHHHHhC----CCCC--ChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCC--ccHHHHHHHHHHHhccCC
Q 007461 203 YSTILVYEKMKSA----GIVL--DSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTP--FSTHMYKILCDSLGKSGR 274 (603)
Q Consensus 203 ~~a~~~~~~m~~~----~~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~ 274 (603)
++|...+++..+. +-.+ ....+..+...+...|++++|...+++.......... ....++..+...+...|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 6666655554432 1011 1233455555666666666666666554422110000 012234455555555666
Q ss_pred HHHHHHHHHHHH
Q 007461 275 AFEALKFFRDMK 286 (603)
Q Consensus 275 ~~~A~~~~~~m~ 286 (603)
+++|.+.+++..
T Consensus 163 ~~~A~~~~~~al 174 (203)
T 3gw4_A 163 LLEAQQHWLRAR 174 (203)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 666655555543
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.58 E-value=5e-06 Score=73.82 Aligned_cols=124 Identities=14% Similarity=0.090 Sum_probs=70.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccC
Q 007461 369 AIVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTG 448 (603)
Q Consensus 369 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 448 (603)
.+...+...|++++|+..|++.. .|+...+..+...+...|++++|...|++..+.. +.+...|..+..+|.+.|
T Consensus 11 ~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~ 85 (213)
T 1hh8_A 11 NEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTE 85 (213)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcc
Confidence 34444555555555555555442 3455555555666666666666666666655543 344555666666666666
Q ss_pred CHHHHHHHHHHHHHcCCCCC----------------HhHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 007461 449 RIRDAMWLVAKMKAKGCEPN----------------VWIYNSLMDMHGRAKNLRQVEKLWKEMERR 498 (603)
Q Consensus 449 ~~~~A~~~~~~m~~~~~~p~----------------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 498 (603)
++++|.+.|++..+.. +.+ ...+..+..+|...|++++|...|++..+.
T Consensus 86 ~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 86 KYDLAIKDLKEALIQL-RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp CHHHHHHHHHHHHHTT-TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHhC-CCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 6666666666665531 111 245556666666666666666666666643
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.57 E-value=1.3e-06 Score=70.66 Aligned_cols=97 Identities=14% Similarity=0.077 Sum_probs=46.7
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhh
Q 007461 117 KSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGY 196 (603)
Q Consensus 117 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 196 (603)
...+..+...+.+.|++++|...+++..+.. +.+...+..+...+...|++++|...+++.....+.+..++..+...+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 94 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAAL 94 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 3344444455555555555555555544432 223444444444444455555555555554444444444444444444
Q ss_pred hhcCcHHHHHHHHHHHHh
Q 007461 197 NKLHMYYSTILVYEKMKS 214 (603)
Q Consensus 197 ~~~~~~~~a~~~~~~m~~ 214 (603)
...|++++|++.|++..+
T Consensus 95 ~~~~~~~~A~~~~~~~~~ 112 (133)
T 2lni_A 95 EAMKDYTKAMDVYQKALD 112 (133)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHH
Confidence 455555555555444443
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.56 E-value=1.6e-06 Score=69.56 Aligned_cols=99 Identities=5% Similarity=-0.022 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 007461 153 HTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYY 232 (603)
Q Consensus 153 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 232 (603)
..+......|.+.|++++|+..|++..+..|.+..+|..+..+|.+.|++++|+..|++.++.+.. +...|..+..+|.
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~ 92 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK-FIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh-hhHHHHHHHHHHH
Confidence 455556666777777777777777777766666777777777777777777777777766664322 4556666666666
Q ss_pred HcCCHHHHHHHHHHHHhCCC
Q 007461 233 KIGDSEKVAALFLECKSRKL 252 (603)
Q Consensus 233 ~~g~~~~a~~~~~~~~~~~~ 252 (603)
..|++++|.+.|++..+.++
T Consensus 93 ~~~~~~~A~~~~~~al~l~P 112 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQVDP 112 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHCT
T ss_pred HCCCHHHHHHHHHHHHHHCc
Confidence 66777777766666665543
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.56 E-value=3.9e-07 Score=75.60 Aligned_cols=98 Identities=11% Similarity=0.020 Sum_probs=65.1
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhh
Q 007461 117 KSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGY 196 (603)
Q Consensus 117 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 196 (603)
...+..+...+.+.|++++|+..|+...+.+ +.+...|..+..+|...|++++|+..|++.....|.++.+|..+..+|
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~ 114 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQ 114 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHH
Confidence 3455666666666777777777777666654 445666666666666667777777777766666666666666666666
Q ss_pred hhcCcHHHHHHHHHHHHhC
Q 007461 197 NKLHMYYSTILVYEKMKSA 215 (603)
Q Consensus 197 ~~~~~~~~a~~~~~~m~~~ 215 (603)
...|++++|+..|++..+.
T Consensus 115 ~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 115 LRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 6666666666666666654
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.56 E-value=5.6e-05 Score=70.93 Aligned_cols=190 Identities=8% Similarity=-0.054 Sum_probs=127.4
Q ss_pred hcCCCChHHHHHHHHHHhhCCCCCCCHHhHHHHHHHHHhcCC----------HHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 007461 91 LKDPQTQELAYDYYNEAKKLPEFRPEKSTLKLLIRYLVQSKK----------WDSIVSLSEDFKIYNVLPDAHTCSRLVA 160 (603)
Q Consensus 91 ~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 160 (603)
.+.+...+.|+++++.+.... +-+...|+.--..+...+. +++++.+++.+...+ +-+..+|+.-..
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~n--P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~w 116 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGAN--PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCW 116 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTTC--TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 345666656888888888753 3334457765554444333 567888888887765 567778877777
Q ss_pred HHHccC--ChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCc-HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHc---
Q 007461 161 SCVRAR--KFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHM-YYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKI--- 234 (603)
Q Consensus 161 ~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~--- 234 (603)
.+.+.+ ++++++.+++.+...++.+..+|+.-.-.+...|. ++++++.++.+++.++. |...|+.....+.+.
T Consensus 117 lL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SAW~~R~~ll~~l~~~ 195 (331)
T 3dss_A 117 LLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQ 195 (331)
T ss_dssp HHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHHSCC
T ss_pred HHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhhhc
Confidence 777766 47888888888888888888888877777777777 57888888888876554 667777666666554
Q ss_pred -----------CCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhcc-----------CCHHHHHHHHHHHHHC
Q 007461 235 -----------GDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKS-----------GRAFEALKFFRDMKEK 288 (603)
Q Consensus 235 -----------g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----------g~~~~A~~~~~~m~~~ 288 (603)
+.++++.+.++.....++. |..+|+-+-..+.+. +.++++++.++++.+.
T Consensus 196 ~~~~~~~~~~~~~~~eEle~~~~ai~~~P~----d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~ 267 (331)
T 3dss_A 196 PDSGPQGRLPENVLLKELELVQNAFFTDPN----DQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQEL 267 (331)
T ss_dssp C------CCCHHHHHHHHHHHHHHHHHSTT----CHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccchHHHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhh
Confidence 3466777777766665543 344666555554444 3456666666666654
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.55 E-value=6.6e-06 Score=77.29 Aligned_cols=168 Identities=9% Similarity=-0.058 Sum_probs=91.4
Q ss_pred hhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCC-----hhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCc--cH
Q 007461 187 LAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLD-----SGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPF--ST 259 (603)
Q Consensus 187 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~ 259 (603)
..+...+..+...|++++|.+.+++..+.....+ ...+..+...+...|++++|...+++........... ..
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 3444455666667777777777766655422111 0122334455566677777777777665433221111 13
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHH---C-CCCC--CHHHHHHHHHHHHccCCHHHHHHHHHHHHHcC----CCC-C
Q 007461 260 HMYKILCDSLGKSGRAFEALKFFRDMKE---K-GILE--DPSIYASLICSFASITEVKLAEELFKEAEEKG----MLR-D 328 (603)
Q Consensus 260 ~~~~~li~~~~~~g~~~~A~~~~~~m~~---~-g~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~----~~~-~ 328 (603)
.+|+.+...|...|++++|+..|++..+ . +..+ ...++..+...|...|++++|...+++..+.. ... -
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 4667777777777777777777776652 1 1111 11355666666666666666666666655431 000 1
Q ss_pred HHHHHHHHHHHHHcCCHHHH-HHHHHH
Q 007461 329 PEVCLKLVLMYIEEGLVEKT-LDVVES 354 (603)
Q Consensus 329 ~~~~~~l~~~~~~~g~~~~a-~~~~~~ 354 (603)
..++..+...|.+.|++++| ...+++
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~ 262 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKK 262 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 34555566666666666666 444444
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.54 E-value=1.5e-06 Score=69.95 Aligned_cols=118 Identities=12% Similarity=0.002 Sum_probs=70.9
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhh
Q 007461 117 KSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGY 196 (603)
Q Consensus 117 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 196 (603)
...+..+...+...|++++|...++...+.. +.+...+..+...+...|++++|...++......+.+..++..+...+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 4455566666666677777777776666553 345556666666666666666666666666665555566666666666
Q ss_pred hhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCC
Q 007461 197 NKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGD 236 (603)
Q Consensus 197 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~ 236 (603)
...|++++|...|++..+.... +...+..+..++.+.|+
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELDPD-NETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTT
T ss_pred HHhCCHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHhc
Confidence 6666666666666665554321 44445555555554443
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.53 E-value=1.9e-07 Score=77.59 Aligned_cols=98 Identities=7% Similarity=-0.024 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 007461 153 HTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYY 232 (603)
Q Consensus 153 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 232 (603)
..+..+...+.+.|++++|...|+++...+|.+...|..+..+|...|++++|+..|++..+.... ++..|..+..+|.
T Consensus 37 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~-~~~~~~~lg~~~~ 115 (151)
T 3gyz_A 37 DDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN-DYTPVFHTGQCQL 115 (151)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS-CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHH
Confidence 344455555555566666666666665555555555555555555566666666655555554322 3445555555555
Q ss_pred HcCCHHHHHHHHHHHHhCC
Q 007461 233 KIGDSEKVAALFLECKSRK 251 (603)
Q Consensus 233 ~~g~~~~a~~~~~~~~~~~ 251 (603)
+.|++++|...|++.....
T Consensus 116 ~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 116 RLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HTTCHHHHHHHHHHHHHHC
T ss_pred HcCCHHHHHHHHHHHHHhC
Confidence 5555555555555554443
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.53 E-value=5.2e-06 Score=77.99 Aligned_cols=168 Identities=15% Similarity=0.024 Sum_probs=107.3
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHhcCCcch------hhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCC---CC--hhh
Q 007461 155 CSRLVASCVRARKFKIANTLLQVFITDGEIAL------LAFNSAMGGYNKLHMYYSTILVYEKMKSAGIV---LD--SGC 223 (603)
Q Consensus 155 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~---p~--~~~ 223 (603)
+...+..+...|++++|.+.++......+... ..+..+...+...|++++|+..+++..+.... +. ..+
T Consensus 78 l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 2qfc_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 33444555666666666666666555433211 22334555566777788888877777653211 11 346
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh---CCCCCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHCC----CCC-CHH
Q 007461 224 YCQIMEAYYKIGDSEKVAALFLECKS---RKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEKG----ILE-DPS 295 (603)
Q Consensus 224 ~~~ll~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g----~~p-~~~ 295 (603)
++.+...|...|++++|...|++... ...........+|+.+...|...|++++|++.+++..+.. ... -..
T Consensus 158 ~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~ 237 (293)
T 2qfc_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQ 237 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 77788888888888888888887762 2221111122578888888889999999998888876431 111 156
Q ss_pred HHHHHHHHHHccCCHHHH-HHHHHHHHH
Q 007461 296 IYASLICSFASITEVKLA-EELFKEAEE 322 (603)
Q Consensus 296 ~~~~ll~~~~~~g~~~~a-~~~~~~~~~ 322 (603)
+|..+...+...|+.++| ...+++...
T Consensus 238 ~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 238 LYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 778888888899999888 776776654
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.53 E-value=1.2e-06 Score=79.85 Aligned_cols=190 Identities=12% Similarity=-0.072 Sum_probs=129.3
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHH-------HHHHHccCChHHHHHHHHHHHhcCCc------c----------
Q 007461 129 QSKKWDSIVSLSEDFKIYNVLPDAHTCSRL-------VASCVRARKFKIANTLLQVFITDGEI------A---------- 185 (603)
Q Consensus 129 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-------l~~~~~~~~~~~a~~~~~~~~~~~~~------~---------- 185 (603)
..++...|.+.|.++.+.. +-....|..+ ...+.+.++..++...++.-....+. +
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~ 96 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITY 96 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEE
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccc
Confidence 4678888888888887776 5566777766 45555555555555555555443331 1
Q ss_pred -----hhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCc-cH
Q 007461 186 -----LLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPF-ST 259 (603)
Q Consensus 186 -----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~ 259 (603)
...+..+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...... ++. ..
T Consensus 97 ~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~---d~~~~~ 171 (282)
T 4f3v_A 97 PVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP---DKFLAG 171 (282)
T ss_dssp ECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS---CHHHHH
T ss_pred ccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC---CcccHH
Confidence 2233456677888889999999988877654 433355566667888899999999987443321 111 12
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHHHHcC
Q 007461 260 HMYKILCDSLGKSGRAFEALKFFRDMKEKGILED--PSIYASLICSFASITEVKLAEELFKEAEEKG 324 (603)
Q Consensus 260 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 324 (603)
.++..+..++...|++++|++.|++.......|. .........++.+.|+.++|..+|+++....
T Consensus 172 ~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 172 AAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 3677788888999999999999998874432253 3355666677778899999999999988865
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.53 E-value=2.5e-06 Score=72.21 Aligned_cols=128 Identities=9% Similarity=-0.013 Sum_probs=81.5
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 007461 153 HTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYY 232 (603)
Q Consensus 153 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 232 (603)
..+..+...+...|+++.|...|+......+.+..+|..+...+...|++++|+..+++..+... .+...+..+...+.
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHH
Confidence 34555666666777777777777777776666677777777777777777777777777666532 24556666677777
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCCccHHHH--HHHHHHHhccCCHHHHHHHHHHH
Q 007461 233 KIGDSEKVAALFLECKSRKLDSTPFSTHMY--KILCDSLGKSGRAFEALKFFRDM 285 (603)
Q Consensus 233 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~--~~li~~~~~~g~~~~A~~~~~~m 285 (603)
..|++++|...|++.....+.. ...+ -.++..+...|++++|++.+...
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p~~----~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKPHD----KDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTC----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 7777777777777666554321 1233 22333355566666666666554
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.50 E-value=1.2e-06 Score=75.31 Aligned_cols=121 Identities=8% Similarity=0.059 Sum_probs=74.0
Q ss_pred hcCCCChHHHHHHHHHHhhCCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHccCCh-
Q 007461 91 LKDPQTQELAYDYYNEAKKLPEFRPEKSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVAS-CVRARKF- 168 (603)
Q Consensus 91 ~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~-~~~~~~~- 168 (603)
...++..+ |...|+.+.+.. +.+...|..+...+...|++++|+..+++..+.. +.+...+..+... +...|++
T Consensus 21 ~~~~~~~~-A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~ 96 (177)
T 2e2e_A 21 ASQQNPEA-QLQALQDKIRAN--PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHM 96 (177)
T ss_dssp C-----CC-CCHHHHHHHHHC--CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCC
T ss_pred hhccCHHH-HHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcc
Confidence 34445544 666676666542 3455666677777777777777777777766554 3455566666666 5566666
Q ss_pred -HHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHhC
Q 007461 169 -KIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSA 215 (603)
Q Consensus 169 -~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 215 (603)
++|...++......+.+..++..+...|...|++++|...|++..+.
T Consensus 97 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 97 TAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 66777766666666666666666666666666666666666666654
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.49 E-value=1.3e-06 Score=81.40 Aligned_cols=95 Identities=11% Similarity=-0.079 Sum_probs=42.8
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhh
Q 007461 118 STLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYN 197 (603)
Q Consensus 118 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 197 (603)
..+..+...+.+.|++++|+..|+...+.. +.+...|..+...+.+.|++++|...+++..+..+.+..++..+..+|.
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (281)
T 2c2l_A 5 QELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQL 83 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 344444444444445555544444444432 2234444444444444444444444444444444444444444444444
Q ss_pred hcCcHHHHHHHHHHHH
Q 007461 198 KLHMYYSTILVYEKMK 213 (603)
Q Consensus 198 ~~~~~~~a~~~~~~m~ 213 (603)
..|++++|+..|++..
T Consensus 84 ~~g~~~~A~~~~~~al 99 (281)
T 2c2l_A 84 EMESYDEAIANLQRAY 99 (281)
T ss_dssp HTTCHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHH
Confidence 4444444444444433
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.48 E-value=1.6e-06 Score=76.37 Aligned_cols=124 Identities=11% Similarity=0.018 Sum_probs=71.9
Q ss_pred HccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHhC----CCC-CChhhHHHHHHHHHHcCCH
Q 007461 163 VRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSA----GIV-LDSGCYCQIMEAYYKIGDS 237 (603)
Q Consensus 163 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~-p~~~~~~~ll~~~~~~g~~ 237 (603)
...|++++|.+.++.+...+.....++..+...+...|++++|...+++..+. +.. ....++..+...+...|++
T Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred cccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 34677888887555555443356677777777788888888888777776551 111 1234556666667777777
Q ss_pred HHHHHHHHHHHhC---CCCCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 007461 238 EKVAALFLECKSR---KLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMK 286 (603)
Q Consensus 238 ~~a~~~~~~~~~~---~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 286 (603)
++|.+.+++.... ..........++..+...+...|++++|.+.+++..
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 134 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSL 134 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 7777776665432 110000123445566666666666666666666554
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.48 E-value=3.6e-07 Score=85.34 Aligned_cols=195 Identities=9% Similarity=0.030 Sum_probs=119.8
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 007461 151 DAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEA 230 (603)
Q Consensus 151 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 230 (603)
+...+..+...+.+.|++++|...|++.....+.+...|..+...|.+.|++++|+..+++..+.... +...+..+..+
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~ 81 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQC 81 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 45566777777888888888888888888877778888888888888888888888888888775432 56677788888
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCH
Q 007461 231 YYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEKGILEDPSIYASLICSFASITEV 310 (603)
Q Consensus 231 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~ 310 (603)
|...|++++|...|++....++.... .+...+....+ ..++.. +..........+......+ ..+ ..|+.
T Consensus 82 ~~~~g~~~~A~~~~~~al~l~p~~~~----~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~i~~~l-~~l-~~~~~ 151 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYSLAKEQRL----NFGDDIPSALR---IAKKKR-WNSIEERRIHQESELHSYL-TRL-IAAER 151 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTC----CCCSHHHHHHH---HHHHHH-HHHHHHTCCCCCCHHHHHH-HHH-HHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCccchh----hHHHHHHHHHH---HHHHHH-HHHHHHHHHhhhHHHHHHH-HHH-HHHHH
Confidence 88888888888888776654321100 01111111111 111111 1222222233333333333 222 25777
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHh
Q 007461 311 KLAEELFKEAEEKGMLRDPEVCLKLVLMYIEE-GLVEKTLDVVESMKN 357 (603)
Q Consensus 311 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~ 357 (603)
++|.+.++...+.. +.+......+...+.+. +.+++|.++|....+
T Consensus 152 ~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 152 ERELEECQRNHEGH-EDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHHHTTTSGGGTTT-SCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHhhhccc-cchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 88887777766543 12333444444445554 667788888887664
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.47 E-value=6.4e-07 Score=74.34 Aligned_cols=48 Identities=13% Similarity=0.054 Sum_probs=17.5
Q ss_pred ccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHHHHHH
Q 007461 164 RARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEK 211 (603)
Q Consensus 164 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 211 (603)
..|++++|...|+.+....+.+...|..+..+|...|++++|+..|++
T Consensus 33 ~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 80 (148)
T 2vgx_A 33 QSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSY 80 (148)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 333333333333333333333333333333333333333333333333
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.47 E-value=1.9e-06 Score=71.47 Aligned_cols=109 Identities=8% Similarity=-0.129 Sum_probs=94.1
Q ss_pred HHHHhhCCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCC
Q 007461 104 YNEAKKLPEFRPEKSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGE 183 (603)
Q Consensus 104 ~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 183 (603)
|+.+.... +.+...+..+...+.+.|++++|+..|+.....+ +.+...|..+..++...|++++|+..|++.....|
T Consensus 10 ~~~al~~~--p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p 86 (148)
T 2vgx_A 10 IAMLNEIS--SDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI 86 (148)
T ss_dssp HHHHTTCC--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHcCC--HhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 44555432 3355677888899999999999999999998876 66888999999999999999999999999999988
Q ss_pred cchhhHHHHHhhhhhcCcHHHHHHHHHHHHhC
Q 007461 184 IALLAFNSAMGGYNKLHMYYSTILVYEKMKSA 215 (603)
Q Consensus 184 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 215 (603)
.+..+|..+..+|...|++++|+..|++..+.
T Consensus 87 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 87 XEPRFPFHAAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 89999999999999999999999999988774
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.46 E-value=1.6e-06 Score=74.45 Aligned_cols=125 Identities=6% Similarity=-0.040 Sum_probs=106.3
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhh-hhhcCcH--HH
Q 007461 128 VQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGG-YNKLHMY--YS 204 (603)
Q Consensus 128 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~--~~ 204 (603)
...|++++|+..++...+.. +.+...|..+...|...|++++|...|++.....+.+...+..+... +...|++ ++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHH
Confidence 45788999999999988776 56788999999999999999999999999999888889999999999 8899998 99
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC
Q 007461 205 TILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDS 254 (603)
Q Consensus 205 a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 254 (603)
|+..+++..+.+.. +...+..+...|...|++++|...|+......+..
T Consensus 100 A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 148 (177)
T 2e2e_A 100 TRAMIDKALALDSN-EITALMLLASDAFMQANYAQAIELWQKVMDLNSPR 148 (177)
T ss_dssp HHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTT
T ss_pred HHHHHHHHHHhCCC-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC
Confidence 99999999886432 57788899999999999999999999998877654
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.46 E-value=2.6e-06 Score=68.88 Aligned_cols=119 Identities=10% Similarity=-0.004 Sum_probs=82.9
Q ss_pred CCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 007461 150 PDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIME 229 (603)
Q Consensus 150 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 229 (603)
.+...+..+...+...|++++|...+++.....+.+..++..+...+...|++++|+..+++..+... .+...+..+..
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~ 92 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEP-TFIKGYTRKAA 92 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CchHHHHHHHH
Confidence 34567777777777888888888888888777777777788888888888888888888877776532 25666777777
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccC
Q 007461 230 AYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSG 273 (603)
Q Consensus 230 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 273 (603)
.+.+.|++++|.+.|++.....+. +...+..+...+...|
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~~p~----~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDLDSS----CKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCGG----GTHHHHHHHHHHHHHT
T ss_pred HHHHHhhHHHHHHHHHHHHHhCCC----chHHHHHHHHHHHHhc
Confidence 777777777777777776655432 1234555555554433
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.46 E-value=4.9e-06 Score=66.20 Aligned_cols=99 Identities=17% Similarity=0.172 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 007461 152 AHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAY 231 (603)
Q Consensus 152 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 231 (603)
...+..+...+...|++++|...++++....+.+..++..+...+...|++++|+..++++.+... .+..++..+...+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~ 87 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHH
Confidence 345555666666666666666666666665555556666666666666666666666666655422 2444555555666
Q ss_pred HHcCCHHHHHHHHHHHHhCC
Q 007461 232 YKIGDSEKVAALFLECKSRK 251 (603)
Q Consensus 232 ~~~g~~~~a~~~~~~~~~~~ 251 (603)
...|++++|...|+++....
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~ 107 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELD 107 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHC
T ss_pred HHhcCHHHHHHHHHHHHHhC
Confidence 66666666666666555443
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.44 E-value=3.7e-06 Score=80.66 Aligned_cols=123 Identities=7% Similarity=-0.054 Sum_probs=75.6
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--------------HHHHHHHHHHHHccCChHHHHHHHHHHHhcC
Q 007461 117 KSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPD--------------AHTCSRLVASCVRARKFKIANTLLQVFITDG 182 (603)
Q Consensus 117 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 182 (603)
...+..+...+.+.|++++|+..|++..+...... ..+|..+..++.+.|++++|+..+++.....
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 226 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD 226 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 45666777777777777777777777776541111 3555666666666666666666666666665
Q ss_pred CcchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCHHHH
Q 007461 183 EIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKV 240 (603)
Q Consensus 183 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a 240 (603)
+.+..+|..+..+|...|++++|+..|++..+.... +...+..+..++.+.|+.++|
T Consensus 227 p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 227 SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHH
Confidence 556666666666666666666666666666554322 444555555556566665555
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.42 E-value=1.7e-06 Score=71.28 Aligned_cols=99 Identities=13% Similarity=-0.092 Sum_probs=78.6
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhh
Q 007461 116 EKSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGG 195 (603)
Q Consensus 116 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 195 (603)
+...+..+...+.+.|++++|+..|+.....+ +.+...|..+..++...|++++|...|+......|.+..+|..+..+
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 95 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAEC 95 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHH
Confidence 34456667777888888888888888887765 55677777888888888888888888888888877788888888888
Q ss_pred hhhcCcHHHHHHHHHHHHhC
Q 007461 196 YNKLHMYYSTILVYEKMKSA 215 (603)
Q Consensus 196 ~~~~~~~~~a~~~~~~m~~~ 215 (603)
|...|++++|+..|+...+.
T Consensus 96 ~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 96 HLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh
Confidence 88888888888888877764
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.41 E-value=4.3e-06 Score=67.07 Aligned_cols=98 Identities=13% Similarity=0.077 Sum_probs=70.2
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhh
Q 007461 117 KSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGY 196 (603)
Q Consensus 117 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 196 (603)
...|..+...+.+.|++++|+..|++..+.. +.+...|..+..++.+.|++++|+..+++.....+.+..+|..+..++
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 3456666677777777777777777777665 455667777777777777777777777777777776777777777777
Q ss_pred hhcCcHHHHHHHHHHHHhC
Q 007461 197 NKLHMYYSTILVYEKMKSA 215 (603)
Q Consensus 197 ~~~~~~~~a~~~~~~m~~~ 215 (603)
...|++++|+..|++..+.
T Consensus 83 ~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 83 IAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHh
Confidence 7777777777777766654
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.40 E-value=5.1e-06 Score=66.78 Aligned_cols=118 Identities=14% Similarity=0.060 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 007461 152 AHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAY 231 (603)
Q Consensus 152 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 231 (603)
...+..+...+...|+++.|...+++.....+.+..++..+...+...|++++|+..+++..+... .+...+..+...+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDP-AYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCc-cCHHHHHHHHHHH
Confidence 344555555666666666666666666665555556666666666666666666666666555422 1344555555566
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccCC
Q 007461 232 YKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGR 274 (603)
Q Consensus 232 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 274 (603)
.+.|++++|...|++.....+. +...+..+...+.+.|+
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~p~----~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELDPD----NETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTT----CHHHHHHHHHHHHHHTT
T ss_pred HHhCCHHHHHHHHHHHHhcCcc----chHHHHHHHHHHHHHhc
Confidence 6666666666666555544322 12344444444444443
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.40 E-value=9.3e-06 Score=63.79 Aligned_cols=98 Identities=9% Similarity=-0.067 Sum_probs=61.0
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhh
Q 007461 117 KSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGY 196 (603)
Q Consensus 117 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 196 (603)
...+..+...+...|++++|...++...... +.+...+..+...+...|++++|...+++.....+.+...+..+...+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 3455566666666666777776666666554 345556666666666666666666666666665555566666666666
Q ss_pred hhcCcHHHHHHHHHHHHhC
Q 007461 197 NKLHMYYSTILVYEKMKSA 215 (603)
Q Consensus 197 ~~~~~~~~a~~~~~~m~~~ 215 (603)
...|++++|...+++..+.
T Consensus 83 ~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTT
T ss_pred HHHhhHHHHHHHHHHHHHc
Confidence 6666666666666665554
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.36 E-value=0.00044 Score=64.85 Aligned_cols=166 Identities=10% Similarity=0.001 Sum_probs=108.8
Q ss_pred HhcCCHH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCC----------hHHHHHHHHHHHhcCCcchhhHHHHHhhh
Q 007461 128 VQSKKWD-SIVSLSEDFKIYNVLPDAHTCSRLVASCVRARK----------FKIANTLLQVFITDGEIALLAFNSAMGGY 196 (603)
Q Consensus 128 ~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 196 (603)
.+.|.+. +|+.+++.+...+ +-+..+|+.--..+...++ +++++.+++.+....|.+..+|+.-.-.+
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~n-P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL 118 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLL 118 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 3455554 7888888888776 4455566654444433332 56778888888888888888888777777
Q ss_pred hhcCc--HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCC-HHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhcc-
Q 007461 197 NKLHM--YYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGD-SEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKS- 272 (603)
Q Consensus 197 ~~~~~--~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~- 272 (603)
...+. +++++.+++.+.+.+.. |...|+.-...+...|. ++++.+.++.+...++. |..+|+.....+.+.
T Consensus 119 ~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~----N~SAW~~R~~ll~~l~ 193 (331)
T 3dss_A 119 SRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS----NYSSWHYRSCLLPQLH 193 (331)
T ss_dssp HHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC----CHHHHHHHHHHHHHHS
T ss_pred hccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC----CHHHHHHHHHHHHHhh
Confidence 77763 77888888888876544 67777777777777777 57888888887776544 345666665555443
Q ss_pred -------------CCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 007461 273 -------------GRAFEALKFFRDMKEKGILEDPSIYASL 300 (603)
Q Consensus 273 -------------g~~~~A~~~~~~m~~~g~~p~~~~~~~l 300 (603)
+.++++++.++...... +-|...|+-+
T Consensus 194 ~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~ 233 (331)
T 3dss_A 194 PQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYH 233 (331)
T ss_dssp CCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHH
T ss_pred hccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 34566666666666542 1144455433
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.36 E-value=4.6e-06 Score=64.92 Aligned_cols=99 Identities=7% Similarity=-0.060 Sum_probs=64.6
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCc--chhhHHHHH
Q 007461 116 EKSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEI--ALLAFNSAM 193 (603)
Q Consensus 116 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~l~ 193 (603)
+...+..+...+...|++++|...++...+.. +.+...+..+...+...|++++|...+++.....+. +..+|..+.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~ 83 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKA 83 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHH
Confidence 34455566666666777777777777666554 345566666666666667777777777766666655 666666666
Q ss_pred hhhhhc-CcHHHHHHHHHHHHhC
Q 007461 194 GGYNKL-HMYYSTILVYEKMKSA 215 (603)
Q Consensus 194 ~~~~~~-~~~~~a~~~~~~m~~~ 215 (603)
..+... |++++|++.+++..+.
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHHhCCHHHHHHHHHHHhhc
Confidence 666666 6666666666666654
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.32 E-value=3.3e-06 Score=69.47 Aligned_cols=96 Identities=15% Similarity=0.104 Sum_probs=53.6
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHH
Q 007461 154 TCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYK 233 (603)
Q Consensus 154 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 233 (603)
.+..+...+.+.|++++|...|+.+....|.+...|..+..+|...|++++|+..|++..+.+.. +...+..+..+|..
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~ 98 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN-EPRFPFHAAECHLQ 98 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHHHHHH
Confidence 34444455555666666666666666555555556666666666666666666666655554322 44455555555555
Q ss_pred cCCHHHHHHHHHHHHhC
Q 007461 234 IGDSEKVAALFLECKSR 250 (603)
Q Consensus 234 ~g~~~~a~~~~~~~~~~ 250 (603)
.|++++|.+.|+.....
T Consensus 99 ~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 99 LGDLDGAESGFYSARAL 115 (142)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 55555555555554443
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.32 E-value=1.8e-05 Score=75.86 Aligned_cols=86 Identities=10% Similarity=0.005 Sum_probs=43.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHH
Q 007461 366 ISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYG 445 (603)
Q Consensus 366 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 445 (603)
+|..+..++.+.|++++|+..+++..+.. +.+...+..+..++...|++++|...|++..+.. +.+...+..+..++.
T Consensus 198 ~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~ 275 (336)
T 1p5q_A 198 SHLNLAMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQ 275 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHH
Confidence 34444555555555555555555544432 2234445555555555555555555555555543 334445555555555
Q ss_pred ccCCHHHH
Q 007461 446 KTGRIRDA 453 (603)
Q Consensus 446 ~~g~~~~A 453 (603)
+.|+.++|
T Consensus 276 ~~~~~~~a 283 (336)
T 1p5q_A 276 RIRRQLAR 283 (336)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555554
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.29 E-value=1.2e-05 Score=64.31 Aligned_cols=97 Identities=8% Similarity=0.011 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 007461 153 HTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYY 232 (603)
Q Consensus 153 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 232 (603)
..+..+...+.+.|++++|...|++.....+.+..+|..+..+|.+.|++++|+..+++..+.+.. +...|..+..++.
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~ 83 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHH
Confidence 445556666667777777777777777766666777777777777777777777777776665322 4556666666666
Q ss_pred HcCCHHHHHHHHHHHHhC
Q 007461 233 KIGDSEKVAALFLECKSR 250 (603)
Q Consensus 233 ~~g~~~~a~~~~~~~~~~ 250 (603)
..|++++|...|++....
T Consensus 84 ~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 84 AVKEYASALETLDAARTK 101 (126)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHh
Confidence 777777777666665544
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.29 E-value=9.8e-07 Score=77.52 Aligned_cols=95 Identities=12% Similarity=-0.082 Sum_probs=44.0
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHhcCCcch----------------hhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCC
Q 007461 155 CSRLVASCVRARKFKIANTLLQVFITDGEIAL----------------LAFNSAMGGYNKLHMYYSTILVYEKMKSAGIV 218 (603)
Q Consensus 155 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~ 218 (603)
+..+...+...|++++|...|++.....+.+. .+|..+..+|...|++++|+..+++..+...
T Consensus 41 ~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p- 119 (198)
T 2fbn_A 41 IKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDK- 119 (198)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-
Confidence 33344444444555555555555444333222 3444444455555555555555554444321
Q ss_pred CChhhHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 007461 219 LDSGCYCQIMEAYYKIGDSEKVAALFLECKSR 250 (603)
Q Consensus 219 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 250 (603)
.+...+..+..+|...|++++|.+.|++....
T Consensus 120 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 151 (198)
T 2fbn_A 120 NNVKALYKLGVANMYFGFLEEAKENLYKAASL 151 (198)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 13344444555555555555555555544443
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.28 E-value=7.8e-06 Score=64.97 Aligned_cols=95 Identities=6% Similarity=-0.161 Sum_probs=70.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhc
Q 007461 120 LKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKL 199 (603)
Q Consensus 120 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 199 (603)
+..+...+.+.|++++|+..++...+.. +.+...|..+..++...|++++|+..|++.....|.+..++..+...|...
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 4455666777778888888887777665 456677777777777777888888877777777777777777777777777
Q ss_pred CcHHHHHHHHHHHHhC
Q 007461 200 HMYYSTILVYEKMKSA 215 (603)
Q Consensus 200 ~~~~~a~~~~~~m~~~ 215 (603)
|++++|+..+++.++.
T Consensus 99 g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 99 HNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHC-
T ss_pred CCHHHHHHHHHHHHHh
Confidence 7777777777777654
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.28 E-value=1.6e-05 Score=64.70 Aligned_cols=99 Identities=12% Similarity=-0.043 Sum_probs=61.5
Q ss_pred CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHh
Q 007461 115 PEKSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMG 194 (603)
Q Consensus 115 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 194 (603)
.+...|..+...+...|++++|+..|+...+.. +.+...+..+...+...|++++|...++......+.+..+|..+..
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 85 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 85 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence 345566666666666666666666666666554 3445566666666666666666666666666655555666666666
Q ss_pred hhhhcCcHHHHHHHHHHHHh
Q 007461 195 GYNKLHMYYSTILVYEKMKS 214 (603)
Q Consensus 195 ~~~~~~~~~~a~~~~~~m~~ 214 (603)
.|...|++++|+..|++..+
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHH
Confidence 66666666666666665544
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.26 E-value=1.5e-05 Score=67.31 Aligned_cols=101 Identities=15% Similarity=0.015 Sum_probs=85.1
Q ss_pred CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHh
Q 007461 115 PEKSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMG 194 (603)
Q Consensus 115 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 194 (603)
.+...+..+...+.+.|++++|+..|++..+.. +.+...|..+..+|...|++++|+..|++.....+.+..+|..+..
T Consensus 9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 87 (164)
T 3sz7_A 9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 345677788888888999999999999888775 5577888888888888999999999999988888888888888999
Q ss_pred hhhhcCcHHHHHHHHHHHHhCC
Q 007461 195 GYNKLHMYYSTILVYEKMKSAG 216 (603)
Q Consensus 195 ~~~~~~~~~~a~~~~~~m~~~~ 216 (603)
+|...|++++|+..|++..+..
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhC
Confidence 9999999999999988887753
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.26 E-value=3.3e-05 Score=60.55 Aligned_cols=98 Identities=10% Similarity=-0.060 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 007461 153 HTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYY 232 (603)
Q Consensus 153 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 232 (603)
..+..+...+...|++++|...++......+.+...+..+...+...|++++|...+++..+... .+...+..+..++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP-DWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHH
Confidence 44555566666667777777777776666666666666666666666666666666666665432 14555566666666
Q ss_pred HcCCHHHHHHHHHHHHhCC
Q 007461 233 KIGDSEKVAALFLECKSRK 251 (603)
Q Consensus 233 ~~g~~~~a~~~~~~~~~~~ 251 (603)
..|++++|.+.|+.....+
T Consensus 84 ~~~~~~~A~~~~~~~~~~~ 102 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKHE 102 (118)
T ss_dssp HTTCHHHHHHHHHHHHTTC
T ss_pred HHhhHHHHHHHHHHHHHcC
Confidence 6666666666666665543
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.26 E-value=1.4e-05 Score=64.09 Aligned_cols=95 Identities=12% Similarity=0.046 Sum_probs=57.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcc-------hhhHHH
Q 007461 119 TLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIA-------LLAFNS 191 (603)
Q Consensus 119 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-------~~~~~~ 191 (603)
.+..+...+.+.|++++|+..|++..+.. +.+..+|..+..+|...|++++|+..+++..+..+.+ ..+|..
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 45556666666777777777777666654 4455666666666666677777766666665543321 134455
Q ss_pred HHhhhhhcCcHHHHHHHHHHHHh
Q 007461 192 AMGGYNKLHMYYSTILVYEKMKS 214 (603)
Q Consensus 192 l~~~~~~~~~~~~a~~~~~~m~~ 214 (603)
+...+...|++++|++.|++.++
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Confidence 55555566666666666665554
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.25 E-value=1.3e-05 Score=70.26 Aligned_cols=128 Identities=7% Similarity=-0.084 Sum_probs=88.1
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----------------HHHHHHHHHHHHccCChHHHHHHHHHHHhc
Q 007461 118 STLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPD----------------AHTCSRLVASCVRARKFKIANTLLQVFITD 181 (603)
Q Consensus 118 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----------------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 181 (603)
..+..+...+.+.|++++|+..|++..+.. +.+ ...+..+..++...|++++|+..++.....
T Consensus 39 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 117 (198)
T 2fbn_A 39 FDIKEEGNEFFKKNEINEAIVKYKEALDFF-IHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI 117 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-TTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-hcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 345666677777888888888888777653 112 266777777788888888888888888887
Q ss_pred CCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCHHHHH-HHHHHH
Q 007461 182 GEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVA-ALFLEC 247 (603)
Q Consensus 182 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~-~~~~~~ 247 (603)
.+.+..++..+..+|...|++++|+..|++..+.... +...+..+..++...++.+++. ..|..+
T Consensus 118 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 183 (198)
T 2fbn_A 118 DKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN-NLDIRNSYELCVNKLKEARKKDKLTFGGM 183 (198)
T ss_dssp STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHC---------
T ss_pred CcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7778888888888888888888888888887775322 5556666776666666665555 344433
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.23 E-value=9.6e-06 Score=65.14 Aligned_cols=97 Identities=16% Similarity=0.124 Sum_probs=65.1
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcc-------hhhHH
Q 007461 118 STLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIA-------LLAFN 190 (603)
Q Consensus 118 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-------~~~~~ 190 (603)
..+..+...+...|++++|...++...+.. +.+...+..+...+...|++++|...++......+.+ ..++.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 456666777777777777777777776654 4456666667777777777777777777766654433 55666
Q ss_pred HHHhhhhhcCcHHHHHHHHHHHHhC
Q 007461 191 SAMGGYNKLHMYYSTILVYEKMKSA 215 (603)
Q Consensus 191 ~l~~~~~~~~~~~~a~~~~~~m~~~ 215 (603)
.+...+...|++++|.+.|++..+.
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHh
Confidence 6666666667777777776666654
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.22 E-value=4e-05 Score=64.66 Aligned_cols=99 Identities=6% Similarity=-0.128 Sum_probs=62.3
Q ss_pred CHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 007461 433 CVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDKVSYTTVIS 512 (603)
Q Consensus 433 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 512 (603)
+...+..+...+.+.|++++|+..|++..+.. +.+...|..+..+|...|++++|+..+++.++.. +-+...|..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 34556666666667777777777777666542 2355666666666666777777777776666542 123455666666
Q ss_pred HHHhcCCHHHHHHHHHHHHHC
Q 007461 513 AYNRAREFDMCVKFYNEFRMN 533 (603)
Q Consensus 513 ~~~~~g~~~~a~~~~~~~~~~ 533 (603)
+|...|++++|+..|++..+.
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHh
Confidence 666666777776666666654
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.22 E-value=1.1e-05 Score=62.64 Aligned_cols=101 Identities=15% Similarity=0.063 Sum_probs=56.9
Q ss_pred chhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccHHHHHH
Q 007461 185 ALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKI 264 (603)
Q Consensus 185 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 264 (603)
+..+|..+...+...|++++|...|++..+... .+...+..+...+...|++++|.+.|++.....+. ..+...|..
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~--~~~~~~~~~ 81 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDP-EESKYWLMKGKALYNLERYEEAVDCYNYVINVIED--EYNKDVWAA 81 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCC--TTCHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc--cchHHHHHH
Confidence 344455555555555666666666655555422 24445555666666666666666666666554432 112345666
Q ss_pred HHHHHhcc-CCHHHHHHHHHHHHHC
Q 007461 265 LCDSLGKS-GRAFEALKFFRDMKEK 288 (603)
Q Consensus 265 li~~~~~~-g~~~~A~~~~~~m~~~ 288 (603)
+...+... |++++|++.+++....
T Consensus 82 l~~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 82 KADALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHHHHhCCHHHHHHHHHHHhhc
Confidence 66666666 6666666666666554
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.21 E-value=2.9e-05 Score=62.20 Aligned_cols=104 Identities=16% Similarity=0.197 Sum_probs=56.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CC----HHHHHH
Q 007461 471 IYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNRAREFDMCVKFYNEFRMNGGV--ID----RAIAGI 544 (603)
Q Consensus 471 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~--~~----~~~~~~ 544 (603)
.+..+...+.+.|++++|+..|++.++.. +-+...|..+..+|...|++++|++.+++.++.+.. .+ ..+|..
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 34445555666666666666666655432 113445556666666666666666666665543211 11 124555
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHH
Q 007461 545 MVGVFSKLSQIEELVKLLQDMKSEGTKLDERLY 577 (603)
Q Consensus 545 l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~ 577 (603)
+..++...|++++|++.|++.++. .||..+.
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~ 119 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLSE--FRDPELV 119 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--SCCHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhh--CcCHHHH
Confidence 666666677777777777766653 3454443
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.21 E-value=3.4e-05 Score=63.54 Aligned_cols=103 Identities=11% Similarity=-0.030 Sum_probs=50.5
Q ss_pred hhHHHHHHhcCCCChHHHHHHHHHHhhCCCCCCC----HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 007461 83 FDSFLHGMLKDPQTQELAYDYYNEAKKLPEFRPE----KSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRL 158 (603)
Q Consensus 83 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 158 (603)
+..+...+...++..+ |.+.|+.+.+. .|+ ...|..+...+...|++++|+..++...+.. +.+...+..+
T Consensus 31 ~~~~a~~~~~~~~~~~-A~~~~~~a~~~---~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~ 105 (148)
T 2dba_A 31 LRKEGNELFKCGDYGG-ALAAYTQALGL---DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALYRR 105 (148)
T ss_dssp HHHHHHHHHTTTCHHH-HHHHHHHHHTS---CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHHHH
T ss_pred HHHHHHHHHHhCCHHH-HHHHHHHHHHH---cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHHHH
Confidence 3444444444444444 55555555543 233 3445555555555555555555555554443 2334444455
Q ss_pred HHHHHccCChHHHHHHHHHHHhcCCcchhhHH
Q 007461 159 VASCVRARKFKIANTLLQVFITDGEIALLAFN 190 (603)
Q Consensus 159 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 190 (603)
...+...|++++|...|++.....+.+..++.
T Consensus 106 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 137 (148)
T 2dba_A 106 SQALEKLGRLDQAVLDLQRCVSLEPKNKVFQE 137 (148)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHH
Confidence 55555555555555555555544444443333
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.20 E-value=1.1e-05 Score=64.20 Aligned_cols=97 Identities=7% Similarity=-0.115 Sum_probs=68.3
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHc
Q 007461 155 CSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKI 234 (603)
Q Consensus 155 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 234 (603)
+..+...+.+.|++++|+..|++.....|.+..+|..+..++...|++++|+..|++..+.... +...+..+..++.+.
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTNE 98 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHc
Confidence 3445556667778888888888877777777777777777777778888887777777765432 556677777777777
Q ss_pred CCHHHHHHHHHHHHhCCC
Q 007461 235 GDSEKVAALFLECKSRKL 252 (603)
Q Consensus 235 g~~~~a~~~~~~~~~~~~ 252 (603)
|++++|...|++....++
T Consensus 99 g~~~~A~~~~~~al~~~P 116 (121)
T 1hxi_A 99 HNANAALASLRAWLLSQP 116 (121)
T ss_dssp HHHHHHHHHHHHHHC---
T ss_pred CCHHHHHHHHHHHHHhCc
Confidence 777777777777665443
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.18 E-value=2.9e-05 Score=63.04 Aligned_cols=99 Identities=11% Similarity=0.037 Sum_probs=59.2
Q ss_pred CCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 007461 150 PDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIME 229 (603)
Q Consensus 150 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 229 (603)
.+...+..+...+...|++++|...|+......+.+..+|..+...+...|++++|+..+++..+.+.. +...+..+..
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~ 85 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQ 85 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch-hHHHHHHHHH
Confidence 345556666666666666666666666666665556666666666666666666666666666554322 4445555555
Q ss_pred HHHHcCCHHHHHHHHHHHHh
Q 007461 230 AYYKIGDSEKVAALFLECKS 249 (603)
Q Consensus 230 ~~~~~g~~~~a~~~~~~~~~ 249 (603)
++...|++++|...|++...
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHH
Confidence 66666666666665555443
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.17 E-value=8.4e-05 Score=61.09 Aligned_cols=97 Identities=11% Similarity=-0.039 Sum_probs=53.4
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 007461 469 VWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPD----KVSYTTVISAYNRAREFDMCVKFYNEFRMNGGVIDRAIAGI 544 (603)
Q Consensus 469 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 544 (603)
...+..+...+...|++++|...|++..+. .|+ ...+..+..+|...|++++|+..+++..+.... +...+..
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~ 104 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG-DVKALYR 104 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC-CHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc-CHHHHHH
Confidence 444555555555555555555555555532 333 344555555566666666666666665554222 3445555
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhC
Q 007461 545 MVGVFSKLSQIEELVKLLQDMKSE 568 (603)
Q Consensus 545 l~~~~~~~g~~~~A~~~~~~m~~~ 568 (603)
+..++...|++++|.+.+++..+.
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHc
Confidence 566666666666666666666543
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.14 E-value=0.00017 Score=71.82 Aligned_cols=198 Identities=12% Similarity=-0.033 Sum_probs=106.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCC----------------HHHHHHHHHHHHccCChHHHHHHHHHHHhcCC--c-
Q 007461 124 IRYLVQSKKWDSIVSLSEDFKIYNVLPD----------------AHTCSRLVASCVRARKFKIANTLLQVFITDGE--I- 184 (603)
Q Consensus 124 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~----------------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~- 184 (603)
.+.+.+.|++++|++.|..+.+...... ..++..+...|...|++++|.+.+..+..... .
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 3455667777777777777665431110 12355666777777777777777766554221 1
Q ss_pred ---chhhHHHHHhhhhhcCcHHHHHHHHHHHHh----CCCCC-ChhhHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCCC
Q 007461 185 ---ALLAFNSAMGGYNKLHMYYSTILVYEKMKS----AGIVL-DSGCYCQIMEAYYKIGDSEKVAALFLECKSR--KLDS 254 (603)
Q Consensus 185 ---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~----~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~--~~~~ 254 (603)
...+.+.+...+...|++++|..+++.... .+..+ -..++..+...|...|++++|..+++++... ....
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 112334444455556677777776665543 22222 2335566777777777777777777665432 1222
Q ss_pred CCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 007461 255 TPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEK----GILED--PSIYASLICSFASITEVKLAEELFKEAE 321 (603)
Q Consensus 255 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 321 (603)
.+....+|..++..|...|++++|..++++.... +..+. ...+..+...+...|+++.|...+.+..
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 2223455666666677777777776666655421 11111 1233334444445555555555554443
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.13 E-value=0.0002 Score=71.33 Aligned_cols=165 Identities=6% Similarity=-0.098 Sum_probs=83.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHH----HHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCc-CHhh
Q 007461 367 SCAIVNGFSKRRGYWAAVKVYEQLISQG-CIPGQV----TYASIINAYCRIALYSKAEKVFIEMQQK----GFDK-CVVA 436 (603)
Q Consensus 367 ~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~----~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~ 436 (603)
+..+...|...|++++|.+.+.++...- ..++.. ..+.+-..+...|+.+++..++...... +..+ -..+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 4445555666666666666655544311 011111 1122222233456666666666655432 1111 1345
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHc--CCC--C-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCC-C-C--HH
Q 007461 437 YSSMVAMYGKTGRIRDAMWLVAKMKAK--GCE--P-NVWIYNSLMDMHGRAKNLRQVEKLWKEMERR--KVT-P-D--KV 505 (603)
Q Consensus 437 ~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~--p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~-p-~--~~ 505 (603)
+..+...|...|++++|..++++.... +.. + ...+|..++..|...|++++|..++++.... .+. | . ..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 566666666677777777766665432 111 1 1345666666677777777777766665321 111 1 1 12
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007461 506 SYTTVISAYNRAREFDMCVKFYNEFR 531 (603)
Q Consensus 506 ~~~~li~~~~~~g~~~~a~~~~~~~~ 531 (603)
.+..+...+...|++++|...|.+..
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 34555555566677777766665554
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.13 E-value=1.6e-05 Score=80.14 Aligned_cols=118 Identities=12% Similarity=0.026 Sum_probs=64.7
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHHHH
Q 007461 126 YLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYST 205 (603)
Q Consensus 126 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 205 (603)
.+.+.|++++|++.+++..+.. +.+..+|..+..+|.+.|++++|+..+++..+..+.+..+|..+..+|...|++++|
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA 93 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAA 93 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 3445566666666666665553 334555666666666666666666666666666555666666666666666666666
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHH--HHHcCCHHHHHHHHH
Q 007461 206 ILVYEKMKSAGIVLDSGCYCQIMEA--YYKIGDSEKVAALFL 245 (603)
Q Consensus 206 ~~~~~~m~~~~~~p~~~~~~~ll~~--~~~~g~~~~a~~~~~ 245 (603)
++.|++..+.... +...+..+..+ +.+.|++++|.+.++
T Consensus 94 ~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 94 LRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHSTT-CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 6666665554221 23334444333 555566666666665
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.08 E-value=4.8e-05 Score=60.93 Aligned_cols=93 Identities=18% Similarity=0.203 Sum_probs=38.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC--CcC----HhhHHHHHH
Q 007461 369 AIVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQKGF--DKC----VVAYSSMVA 442 (603)
Q Consensus 369 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--~~~----~~~~~~li~ 442 (603)
.+...+...|++++|+..|++..... +.+...+..+...+...|++++|...++...+... .++ ...+..+..
T Consensus 9 ~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~ 87 (131)
T 1elr_A 9 ELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGN 87 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHH
Confidence 33344444444444444444443332 12333344444444444444444444444433210 011 334444444
Q ss_pred HHHccCCHHHHHHHHHHHHH
Q 007461 443 MYGKTGRIRDAMWLVAKMKA 462 (603)
Q Consensus 443 ~~~~~g~~~~A~~~~~~m~~ 462 (603)
.|.+.|++++|.+.|++..+
T Consensus 88 ~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 88 SYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHH
Confidence 44445555555555544444
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.06 E-value=0.00012 Score=75.04 Aligned_cols=181 Identities=7% Similarity=-0.086 Sum_probs=140.3
Q ss_pred HHhcCCCChHHHHHHHHHHhhCCCCCCCHHhHHHHHHHHHhcCC----------HHHHHHHHHHHHhCCCCCCHHHHHHH
Q 007461 89 GMLKDPQTQELAYDYYNEAKKLPEFRPEKSTLKLLIRYLVQSKK----------WDSIVSLSEDFKIYNVLPDAHTCSRL 158 (603)
Q Consensus 89 ~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l 158 (603)
++.+.+...+.|++.++.+.+.. +-+...|+..-..+.+.|+ +++++..++.+.+.+ +-+..+|..-
T Consensus 37 ~~~~~~~~~eeal~~~~~~l~~n--P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR 113 (567)
T 1dce_A 37 QKRQAGELDESVLELTSQILGAN--PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHR 113 (567)
T ss_dssp HHHHTTCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHcCCCCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 34455666666999999998753 3455668887777777777 899999999998876 6678888888
Q ss_pred HHHHHccC--ChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcC-cHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHc-
Q 007461 159 VASCVRAR--KFKIANTLLQVFITDGEIALLAFNSAMGGYNKLH-MYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKI- 234 (603)
Q Consensus 159 l~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~- 234 (603)
...+.+.+ +++++++.++++.+.++.+..+|+.-...+.+.| .++++++.++++++.++. |...|+.....+.+.
T Consensus 114 ~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~ 192 (567)
T 1dce_A 114 CWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLH 192 (567)
T ss_dssp HHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHS
T ss_pred HHHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhc
Confidence 88888888 6699999999999999999999998888888888 888999999988887654 777888777776663
Q ss_pred -------------CCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccCCHHH
Q 007461 235 -------------GDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFE 277 (603)
Q Consensus 235 -------------g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 277 (603)
+.++++.+.+++....++. +..+|+.+...+.+.++.++
T Consensus 193 ~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~----~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 193 PQPDSGPQGRLPENVLLKELELVQNAFFTDPN----DQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSS----CSHHHHHHHHHHSCCCCCSC
T ss_pred ccccccccccccHHHHHHHHHHHHHHHhhCCC----CccHHHHHHHHHhcCCCccc
Confidence 4567888888777766543 23578877777777776444
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.04 E-value=9.8e-05 Score=59.08 Aligned_cols=93 Identities=10% Similarity=-0.016 Sum_probs=55.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHccCChHHHHHHHHHHHhcCCcc---hhhHHHHHhh
Q 007461 122 LLIRYLVQSKKWDSIVSLSEDFKIYNVLPDA---HTCSRLVASCVRARKFKIANTLLQVFITDGEIA---LLAFNSAMGG 195 (603)
Q Consensus 122 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~l~~~ 195 (603)
.+...+...|++++|...|+.+.+.. +.+. ..+..+...+...|++++|...|+.+....+.+ ..++..+...
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHH
Confidence 34555666666777776666666543 2222 355555566666666666666666666655544 4556666666
Q ss_pred hhhcCcHHHHHHHHHHHHhC
Q 007461 196 YNKLHMYYSTILVYEKMKSA 215 (603)
Q Consensus 196 ~~~~~~~~~a~~~~~~m~~~ 215 (603)
+...|++++|...|+.+.+.
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 66666666666666666554
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.01 E-value=7.5e-05 Score=74.85 Aligned_cols=121 Identities=10% Similarity=-0.025 Sum_probs=60.7
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---------------HHHHHHHHHHHHccCChHHHHHHHHHHHhcC
Q 007461 118 STLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPD---------------AHTCSRLVASCVRARKFKIANTLLQVFITDG 182 (603)
Q Consensus 118 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---------------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 182 (603)
..|..+...+.+.|++++|+..|++..+.. +.+ ..+|..+..+|.+.|++++|+..++++....
T Consensus 269 ~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~-p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 347 (457)
T 1kt0_A 269 AIVKEKGTVYFKGGKYMQAVIQYGKIVSWL-EMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 347 (457)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-TTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHh-cccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 356666667777777777777777766543 111 3444444444555555555555555555444
Q ss_pred CcchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCHHHH
Q 007461 183 EIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKV 240 (603)
Q Consensus 183 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a 240 (603)
+.+..+|..+..+|...|++++|+..|++..+.... +...+..+..++.+.++.+++
T Consensus 348 p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a 404 (457)
T 1kt0_A 348 SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ-NKAARLQISMCQKKAKEHNER 404 (457)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHH
Confidence 444444555555555555555555555544443211 233444444444444444433
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.00 E-value=5.9e-05 Score=63.04 Aligned_cols=133 Identities=10% Similarity=0.065 Sum_probs=75.9
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHcCC-CCC----HhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----H
Q 007461 435 VAYSSMVAMYGKTGRIRDAMWLVAKMKAKGC-EPN----VWIYNSLMDMHGRAKNLRQVEKLWKEMERRKV-TPD----K 504 (603)
Q Consensus 435 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~p~----~ 504 (603)
.++..+...+...|++++|...+++..+..- .++ ..++..+...+...|++++|...+++..+... .++ .
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 3455555566666666666666665543200 011 13455566666666777777766666543210 011 2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 007461 505 VSYTTVISAYNRAREFDMCVKFYNEFRMN----GGVI-DRAIAGIMVGVFSKLSQIEELVKLLQDMKS 567 (603)
Q Consensus 505 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 567 (603)
..+..+...+...|++++|.+.+++..+. +..+ ....+..+...+...|++++|.+.+++..+
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 34566666777777777777777766532 1111 123456677777777888888777777654
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=97.98 E-value=2e-05 Score=79.36 Aligned_cols=119 Identities=8% Similarity=-0.030 Sum_probs=91.1
Q ss_pred HHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCHHH
Q 007461 160 ASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEK 239 (603)
Q Consensus 160 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~ 239 (603)
..+.+.|++++|.+.+++..+..+.+..+|..+..+|.+.|++++|++.+++..+.... +...+..+..+|.+.|++++
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~~~~~g~~~e 92 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMALGKFRA 92 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHH
Confidence 34556788999999999988888888888999999999999999999999988886433 66788888888999999999
Q ss_pred HHHHHHHHHhCCCCCCCccHHHHHHHHHH--HhccCCHHHHHHHHH
Q 007461 240 VAALFLECKSRKLDSTPFSTHMYKILCDS--LGKSGRAFEALKFFR 283 (603)
Q Consensus 240 a~~~~~~~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~A~~~~~ 283 (603)
|.+.|++..+..+... .++..+..+ +.+.|++++|++.++
T Consensus 93 A~~~~~~al~~~p~~~----~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 93 ALRDYETVVKVKPHDK----DAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHSTTCT----THHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHhCCCCH----HHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999988877654332 356656555 778888888888887
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.97 E-value=4.5e-05 Score=63.74 Aligned_cols=64 Identities=14% Similarity=0.064 Sum_probs=27.8
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHhCCC--CCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 007461 223 CYCQIMEAYYKIGDSEKVAALFLECKSRKL--DSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMK 286 (603)
Q Consensus 223 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 286 (603)
++..+...+...|++++|.+.+++...... ........++..+...+...|++++|.+.+++..
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 156 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 156 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 344444455555555555555544332110 0000112334445555555555555555554443
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.97 E-value=6.2e-05 Score=72.94 Aligned_cols=138 Identities=9% Similarity=0.000 Sum_probs=68.7
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhh
Q 007461 118 STLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYN 197 (603)
Q Consensus 118 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 197 (603)
..+..+...+.+.|++++|+..|++..+.- +.. ..... .+......+.+..+|..+..+|.
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~--~~~----------~~~~~-------~~~~~~~~~~~~~~~~nla~~~~ 284 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYV--EGS----------RAAAE-------DADGAKLQPVALSCVLNIGACKL 284 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHH----------HHHSC-------HHHHGGGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHh--hcC----------ccccC-------hHHHHHHHHHHHHHHHHHHHHHH
Confidence 346777788888888888888888876521 000 00000 00111112223444555555555
Q ss_pred hcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccCCHHH
Q 007461 198 KLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFE 277 (603)
Q Consensus 198 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 277 (603)
+.|++++|+..+++.++.... +...+..+..+|...|++++|.+.|++..+..+. +...+..+...+...++.++
T Consensus 285 ~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~----~~~~~~~l~~~~~~~~~~~~ 359 (370)
T 1ihg_A 285 KMSDWQGAVDSCLEALEIDPS-NTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE----DKAIQAELLKVKQKIKAQKD 359 (370)
T ss_dssp HTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555543221 3444555555555555555555555555444322 22345555555555555544
Q ss_pred HH
Q 007461 278 AL 279 (603)
Q Consensus 278 A~ 279 (603)
+.
T Consensus 360 a~ 361 (370)
T 1ihg_A 360 KE 361 (370)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.93 E-value=0.0001 Score=61.87 Aligned_cols=99 Identities=7% Similarity=-0.068 Sum_probs=70.7
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhC--------C---------CCCCHHHHHHHHHHHHccCChHHHHHHHHHHH
Q 007461 117 KSTLKLLIRYLVQSKKWDSIVSLSEDFKIY--------N---------VLPDAHTCSRLVASCVRARKFKIANTLLQVFI 179 (603)
Q Consensus 117 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------~---------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 179 (603)
...+......+.+.|++++|+..|+..... . -+.+...|..+..+|.+.|++++|+..++...
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 445677777888888888888888887764 1 01223566666677777777777777777777
Q ss_pred hcCCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHhC
Q 007461 180 TDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSA 215 (603)
Q Consensus 180 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 215 (603)
..++.+..+|..+..+|...|++++|+..|++..+.
T Consensus 91 ~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 91 KREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 777777777777777777777777777777777664
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.92 E-value=0.00014 Score=58.22 Aligned_cols=93 Identities=11% Similarity=0.094 Sum_probs=50.3
Q ss_pred HHHHHHccCChHHHHHHHHHHHhcCCcch---hhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCC---hhhHHHHHHHH
Q 007461 158 LVASCVRARKFKIANTLLQVFITDGEIAL---LAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLD---SGCYCQIMEAY 231 (603)
Q Consensus 158 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~---~~~~~~ll~~~ 231 (603)
+...+...|++++|...|+.+....+.+. .++..+...+...|++++|+..|++..+.... + ...+..+..++
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~la~~~ 86 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT-HDKAAGGLLKLGLSQ 86 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-STTHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHH
Confidence 33445556666666666666665544433 45555555666666666666666655553211 1 33444555555
Q ss_pred HHcCCHHHHHHHHHHHHhCC
Q 007461 232 YKIGDSEKVAALFLECKSRK 251 (603)
Q Consensus 232 ~~~g~~~~a~~~~~~~~~~~ 251 (603)
.+.|++++|...|+.+....
T Consensus 87 ~~~g~~~~A~~~~~~~~~~~ 106 (129)
T 2xev_A 87 YGEGKNTEAQQTLQQVATQY 106 (129)
T ss_dssp HHTTCHHHHHHHHHHHHHHS
T ss_pred HHcCCHHHHHHHHHHHHHHC
Confidence 55555555555555555443
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.92 E-value=9.2e-05 Score=74.22 Aligned_cols=123 Identities=15% Similarity=0.030 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcc---------------hhhHHHHHhhhhhcCcHHHHHHHHHHHHhCC
Q 007461 152 AHTCSRLVASCVRARKFKIANTLLQVFITDGEIA---------------LLAFNSAMGGYNKLHMYYSTILVYEKMKSAG 216 (603)
Q Consensus 152 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 216 (603)
...+..+...+.+.|++++|...|++.....+.+ ..+|..+..+|.+.|++++|+..+++.++..
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 347 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 347 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 4466667777778888888888888877755544 4566666666666666666666666666543
Q ss_pred CCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccCCHHHHH
Q 007461 217 IVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEAL 279 (603)
Q Consensus 217 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 279 (603)
.. +...|..+..+|...|++++|...|++..+.++.. ..++..+..++.+.++.+++.
T Consensus 348 p~-~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~----~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 348 SA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQN----KAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp TT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--------CHHHHHHHHHHHHHHHHHHH
T ss_pred Cc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHHHHHHHHH
Confidence 22 45556666666666666666666666665544322 235555555555555555544
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.89 E-value=2.1e-05 Score=62.01 Aligned_cols=84 Identities=11% Similarity=-0.124 Sum_probs=40.6
Q ss_pred CCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHHH
Q 007461 131 KKWDSIVSLSEDFKIYN--VLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILV 208 (603)
Q Consensus 131 ~~~~~a~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 208 (603)
|++++|+..|++..+.+ -+.+..++..+...|...|++++|+..|++..+..|.+..++..+..++...|++++|+..
T Consensus 4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 83 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVEL 83 (117)
T ss_dssp ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHH
Confidence 44555555555554432 1222344444555555555555555555555555554555555555555555555555555
Q ss_pred HHHHHh
Q 007461 209 YEKMKS 214 (603)
Q Consensus 209 ~~~m~~ 214 (603)
|++..+
T Consensus 84 ~~~al~ 89 (117)
T 3k9i_A 84 LLKIIA 89 (117)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555444
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.88 E-value=0.00018 Score=58.95 Aligned_cols=97 Identities=9% Similarity=-0.063 Sum_probs=60.7
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC------CH-----HHHHHHHHHHHccCChHHHHHHHHHHHhc-----
Q 007461 118 STLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLP------DA-----HTCSRLVASCVRARKFKIANTLLQVFITD----- 181 (603)
Q Consensus 118 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~------~~-----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----- 181 (603)
..+......+.+.|++++|+..|++..+..... +. ..|..+..++.+.|++++|+..+++.+..
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~ 91 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRG 91 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc
Confidence 345566677778888888888888877664210 12 25666666666666666666666666665
Q ss_pred --CCcchhhH----HHHHhhhhhcCcHHHHHHHHHHHHh
Q 007461 182 --GEIALLAF----NSAMGGYNKLHMYYSTILVYEKMKS 214 (603)
Q Consensus 182 --~~~~~~~~----~~l~~~~~~~~~~~~a~~~~~~m~~ 214 (603)
+|.+..+| .....++...|++++|+..|++.++
T Consensus 92 e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 92 ELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp CTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 55555555 5555566666666666666555543
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.85 E-value=2.9e-05 Score=61.20 Aligned_cols=86 Identities=14% Similarity=0.048 Sum_probs=51.9
Q ss_pred cCCHHHHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHH
Q 007461 482 AKNLRQVEKLWKEMERRKV-TP-DKVSYTTVISAYNRAREFDMCVKFYNEFRMNGGVIDRAIAGIMVGVFSKLSQIEELV 559 (603)
Q Consensus 482 ~g~~~~a~~~~~~m~~~~~-~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 559 (603)
.|++++|+..|++.++.+. .| +...+..+..+|...|++++|+..++++.+.... +...+..+..++.+.|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHHHHH
Confidence 4566666777776664321 12 2345666666677777777777777777665433 4556666677777777777777
Q ss_pred HHHHHHHhC
Q 007461 560 KLLQDMKSE 568 (603)
Q Consensus 560 ~~~~~m~~~ 568 (603)
+.+++..+.
T Consensus 82 ~~~~~al~~ 90 (117)
T 3k9i_A 82 ELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 777766654
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.85 E-value=4.1e-05 Score=73.37 Aligned_cols=148 Identities=11% Similarity=0.016 Sum_probs=65.8
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhh
Q 007461 118 STLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYN 197 (603)
Q Consensus 118 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 197 (603)
..+..+...+.+.|++++|+..|+...... |+... +...++.+++...+ ...+|+.+..+|.
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~-------~~~~~~~~~~~~~l---------~~~~~~nla~~~~ 241 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDFM-------FQLYGKYQDMALAV---------KNPCHLNIAACLI 241 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHHH-------HTCCHHHHHHHHHH---------HTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccchh-------hhhcccHHHHHHHH---------HHHHHHHHHHHHH
Confidence 345566666677777777777777766543 33221 11112222222111 1135666666777
Q ss_pred hcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHH-HhccCCHH
Q 007461 198 KLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDS-LGKSGRAF 276 (603)
Q Consensus 198 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~~~ 276 (603)
+.|++++|+..+++.++... .+...|..+..+|...|++++|...|++.....+. +..++..+... ....+..+
T Consensus 242 ~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~----~~~a~~~L~~l~~~~~~~~~ 316 (338)
T 2if4_A 242 KLKRYDEAIGHCNIVLTEEE-KNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPD----DKAIRRELRALAEQEKALYQ 316 (338)
T ss_dssp TTTCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------------------
T ss_pred HcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC----CHHHHHHHHHHHHHHHHHHH
Confidence 77777777777776666432 25566667777777777777777777766554332 12345555544 33445566
Q ss_pred HHHHHHHHHHHC
Q 007461 277 EALKFFRDMKEK 288 (603)
Q Consensus 277 ~A~~~~~~m~~~ 288 (603)
++.++|..|...
T Consensus 317 ~a~~~~~~~l~~ 328 (338)
T 2if4_A 317 KQKEMYKGIFKG 328 (338)
T ss_dssp ------------
T ss_pred HHHHHHHHhhCC
Confidence 666777776544
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.84 E-value=0.00015 Score=70.18 Aligned_cols=137 Identities=14% Similarity=0.034 Sum_probs=96.3
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHH
Q 007461 154 TCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYK 233 (603)
Q Consensus 154 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 233 (603)
.+..+...+.+.|++++|+..|++.....+... .....+ ...+.. ..+..+|..+..+|.+
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~-----------~~~~~~-------~~~~~~-~~~~~~~~nla~~~~~ 285 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSR-----------AAAEDA-------DGAKLQ-PVALSCVLNIGACKLK 285 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH-----------HHSCHH-------HHGGGH-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCc-----------cccChH-------HHHHHH-HHHHHHHHHHHHHHHh
Confidence 355566677778888888887777664211000 000011 111110 1145688899999999
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCCHHH
Q 007461 234 IGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEKGILE-DPSIYASLICSFASITEVKL 312 (603)
Q Consensus 234 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~ 312 (603)
.|++++|++.+++..+.++. +..+|..+..+|...|++++|++.|++..+. .| +...+..+..++...++.++
T Consensus 286 ~g~~~~A~~~~~~al~~~p~----~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l--~P~~~~~~~~l~~~~~~~~~~~~ 359 (370)
T 1ihg_A 286 MSDWQGAVDSCLEALEIDPS----NTKALYRRAQGWQGLKEYDQALADLKKAQEI--APEDKAIQAELLKVKQKIKAQKD 359 (370)
T ss_dssp TTCHHHHHHHHHHHHTTCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHhCch----hHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999886543 4578999999999999999999999999886 44 56677777777777777776
Q ss_pred HHH
Q 007461 313 AEE 315 (603)
Q Consensus 313 a~~ 315 (603)
+.+
T Consensus 360 a~k 362 (370)
T 1ihg_A 360 KEK 362 (370)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.82 E-value=0.001 Score=68.16 Aligned_cols=171 Identities=9% Similarity=-0.027 Sum_probs=126.5
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCC----------hHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcC
Q 007461 131 KKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARK----------FKIANTLLQVFITDGEIALLAFNSAMGGYNKLH 200 (603)
Q Consensus 131 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 200 (603)
...++|++.++.+.+.+ +-+..+|+.--..+...|+ ++++.+.++.+.+..+.+..+|+.-.-.+.+.+
T Consensus 43 ~~~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 43 ELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLP 121 (567)
T ss_dssp CCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCS
T ss_pred CCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc
Confidence 34468899999998876 5566777777666666666 889999999999998999999998888888888
Q ss_pred --cHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcC-CHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhcc-----
Q 007461 201 --MYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIG-DSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKS----- 272 (603)
Q Consensus 201 --~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~----- 272 (603)
+++++++.++++.+.+.. |...|+.-..++.+.| .++++.+.++++.+.++. +..+|+.....+.+.
T Consensus 122 ~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~----n~saW~~r~~ll~~l~~~~~ 196 (567)
T 1dce_A 122 EPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS----NYSSWHYRSCLLPQLHPQPD 196 (567)
T ss_dssp SCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC----CHHHHHHHHHHHHHHSCCCC
T ss_pred cccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC----CccHHHHHHHHHHhhccccc
Confidence 669999999999987655 7788888888888888 888888888887766543 456777776666553
Q ss_pred ---------CCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCC
Q 007461 273 ---------GRAFEALKFFRDMKEKGILE-DPSIYASLICSFASITE 309 (603)
Q Consensus 273 ---------g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~ 309 (603)
+.++++++.+++.... .| |...|.-.-..+.+.+.
T Consensus 197 ~~~~~~~~~~~~~eel~~~~~ai~~--~P~~~saW~y~~~ll~~~~~ 241 (567)
T 1dce_A 197 SGPQGRLPENVLLKELELVQNAFFT--DPNDQSAWFYHRWLLGRAEP 241 (567)
T ss_dssp SSSCCSSCHHHHHHHHHHHHHHHHH--CSSCSHHHHHHHHHHSCCCC
T ss_pred ccccccccHHHHHHHHHHHHHHHhh--CCCCccHHHHHHHHHhcCCC
Confidence 4456777777666654 23 44555555555444443
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.79 E-value=0.00014 Score=61.04 Aligned_cols=115 Identities=10% Similarity=-0.001 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 007461 153 HTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYY 232 (603)
Q Consensus 153 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 232 (603)
..+......+.+.|++++|+..|......-+. ........... ...+. +.+...|..+..+|.
T Consensus 12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~-----------~~~~~~~~~~~--~~~~~----~~~~~~~~nla~~~~ 74 (162)
T 3rkv_A 12 EALRQKGNELFVQKDYKEAIDAYRDALTRLDT-----------LILREKPGEPE--WVELD----RKNIPLYANMSQCYL 74 (162)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-----------HHHTSCTTSHH--HHHHH----HTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH-----------hcccCCCCHHH--HHHHH----HHHHHHHHHHHHHHH
Confidence 45566667777888888888888877654000 00000000000 00000 012335555566666
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 007461 233 KIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEK 288 (603)
Q Consensus 233 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 288 (603)
+.|++++|...++.....++. +..+|..+..+|...|++++|+..|++....
T Consensus 75 ~~~~~~~A~~~~~~al~~~p~----~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 75 NIGDLHEAEETSSEVLKREET----NEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHTCHHHHHHHHHHHHHHSTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hcCcHHHHHHHHHHHHhcCCc----chHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 666666666666665554322 2345666666666666666666666666554
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.71 E-value=2.7e-05 Score=60.47 Aligned_cols=89 Identities=8% Similarity=-0.088 Sum_probs=48.5
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcc------hhhHH
Q 007461 117 KSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIA------LLAFN 190 (603)
Q Consensus 117 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~ 190 (603)
...+..+...+...|++++|+..|++..+.. +.+...+..+..++...|++++|+..+++.....+.+ ..++.
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 4455555566666666666666666665553 3345555555566666666666666666665555443 33444
Q ss_pred HHHhhhhhcCcHHHHH
Q 007461 191 SAMGGYNKLHMYYSTI 206 (603)
Q Consensus 191 ~l~~~~~~~~~~~~a~ 206 (603)
.+..++...|+++.|+
T Consensus 83 ~~~~~~~~~~~~~~a~ 98 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPV 98 (111)
T ss_dssp HHHHHHHHHHCCCCCS
T ss_pred HHHHHHHHHHhHhhhH
Confidence 4444444444444433
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.70 E-value=0.00037 Score=57.08 Aligned_cols=111 Identities=12% Similarity=0.015 Sum_probs=59.7
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHH
Q 007461 154 TCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYK 233 (603)
Q Consensus 154 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 233 (603)
.+......+.+.|++++|+..|++..+..|..+.. ++... .+.+...|..+..++.+
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~---------------~a~~~--------~~~~a~a~~n~g~al~~ 69 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPE---------------EAFDH--------AGFDAFCHAGLAEALAG 69 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTT---------------SCCCH--------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcch---------------hhhhh--------ccchHHHHHHHHHHHHH
Confidence 34445555666777777777777776655431110 00000 00011255555555666
Q ss_pred cCCHHHHHHHHHHHHhC---CCCCCCccHHHH----HHHHHHHhccCCHHHHHHHHHHHHH
Q 007461 234 IGDSEKVAALFLECKSR---KLDSTPFSTHMY----KILCDSLGKSGRAFEALKFFRDMKE 287 (603)
Q Consensus 234 ~g~~~~a~~~~~~~~~~---~~~~~~~~~~~~----~~li~~~~~~g~~~~A~~~~~~m~~ 287 (603)
.|++++|+..+++..+. ....+|.+..+| .....++...|++++|+..|++.++
T Consensus 70 Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 70 LRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 66666666655555543 000011234566 7777777778888888887777754
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.68 E-value=0.00015 Score=69.37 Aligned_cols=147 Identities=12% Similarity=0.035 Sum_probs=67.3
Q ss_pred hhHHHHHHhcCCCChHHHHHHHHHHhhCCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 007461 83 FDSFLHGMLKDPQTQELAYDYYNEAKKLPEFRPEKSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASC 162 (603)
Q Consensus 83 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 162 (603)
+...-..+.+.++..+ |...|+.+.+. .|+... +...++.+++...+. ...|..+..+|
T Consensus 182 ~~~~g~~~~~~g~~~~-A~~~y~~Al~~---~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~~ 240 (338)
T 2if4_A 182 RKMDGNSLFKEEKLEE-AMQQYEMAIAY---MGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAACL 240 (338)
T ss_dssp HHHHHHHTCSSSCCHH-HHHHHHHHHHH---SCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHH-HHHHHHHHHHH---hccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHHH
Confidence 4555566667788877 99999998864 344321 111222222222111 12455566666
Q ss_pred HccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHH-HHHcCCHHHHH
Q 007461 163 VRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEA-YYKIGDSEKVA 241 (603)
Q Consensus 163 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~-~~~~g~~~~a~ 241 (603)
.+.|++++|+..+++.....+.+..+|..+..+|...|++++|+..|++..+.... +...+..+... ....+..+.+.
T Consensus 241 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~-~~~a~~~L~~l~~~~~~~~~~a~ 319 (338)
T 2if4_A 241 IKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPD-DKAIRRELRALAEQEKALYQKQK 319 (338)
T ss_dssp HTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------------------
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHH
Confidence 66677777777777766666666666777777777777777777777666554221 33344444433 22344556666
Q ss_pred HHHHHHHhCC
Q 007461 242 ALFLECKSRK 251 (603)
Q Consensus 242 ~~~~~~~~~~ 251 (603)
.+|..+....
T Consensus 320 ~~~~~~l~~~ 329 (338)
T 2if4_A 320 EMYKGIFKGK 329 (338)
T ss_dssp ----------
T ss_pred HHHHHhhCCC
Confidence 6666665443
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.67 E-value=0.0015 Score=52.92 Aligned_cols=110 Identities=11% Similarity=0.030 Sum_probs=58.6
Q ss_pred CHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHH
Q 007461 449 RIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNR----AREFDMCV 524 (603)
Q Consensus 449 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~ 524 (603)
++++|.+.|++..+.| .|+.. |...|...+.+++|.+.|++..+.| +...+..|...|.. .+++++|.
T Consensus 10 d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 4455555555555544 22222 4444444455555555555555543 44455555555555 45666666
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHHhCC
Q 007461 525 KFYNEFRMNGGVIDRAIAGIMVGVFSK----LSQIEELVKLLQDMKSEG 569 (603)
Q Consensus 525 ~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~g 569 (603)
++|++..+.| ++..+..|...|.. .+++++|.+++++..+.|
T Consensus 82 ~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 82 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 6666665543 34445555555555 556666666666665554
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.65 E-value=0.00014 Score=59.49 Aligned_cols=98 Identities=13% Similarity=0.051 Sum_probs=71.3
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCC----------hHHHHHHHHHHHhcCCcchhhHHHHHhhhhh
Q 007461 129 QSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARK----------FKIANTLLQVFITDGEIALLAFNSAMGGYNK 198 (603)
Q Consensus 129 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 198 (603)
+.+.+++|++.++...+.+ +.+...|..+..++...++ +++|+..|++..+.+|....+|..+..+|..
T Consensus 14 r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence 4455667777777776665 5566666666666666554 4588888888888888888888888888887
Q ss_pred cC-----------cHHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 007461 199 LH-----------MYYSTILVYEKMKSAGIVLDSGCYCQIME 229 (603)
Q Consensus 199 ~~-----------~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 229 (603)
.| ++++|++.|++.++. .|+...|..-+.
T Consensus 93 lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al~ 132 (158)
T 1zu2_A 93 FAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLE 132 (158)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred hcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 64 788999999888874 566655554444
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.63 E-value=0.00054 Score=53.42 Aligned_cols=80 Identities=5% Similarity=-0.110 Sum_probs=59.7
Q ss_pred HHHHHHHHhhCCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHH
Q 007461 100 AYDYYNEAKKLPEFRPEKSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFI 179 (603)
Q Consensus 100 a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 179 (603)
|++.|+.+.+.. +.+...+..+...+...|++++|+..++...+.. +.+...|..+..++...|++++|...|++..
T Consensus 4 a~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 4 ITERLEAMLAQG--TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp HHHHHHHHHTTT--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC--CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 667777777643 4466777888888888888888888888887765 4556777777778888888888888888776
Q ss_pred hcC
Q 007461 180 TDG 182 (603)
Q Consensus 180 ~~~ 182 (603)
...
T Consensus 81 ~~~ 83 (115)
T 2kat_A 81 AAA 83 (115)
T ss_dssp HHH
T ss_pred Hhc
Confidence 543
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.61 E-value=0.00023 Score=55.65 Aligned_cols=80 Identities=11% Similarity=-0.051 Sum_probs=61.4
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHh
Q 007461 135 SIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKS 214 (603)
Q Consensus 135 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 214 (603)
.|+..++...+.. +.+...+..+...+...|++++|+..|++.....+.+..+|..+...|...|++++|...|++..+
T Consensus 3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4666777776654 456777777888888888888888888888887777777888888888888888888888877765
Q ss_pred C
Q 007461 215 A 215 (603)
Q Consensus 215 ~ 215 (603)
.
T Consensus 82 ~ 82 (115)
T 2kat_A 82 A 82 (115)
T ss_dssp H
T ss_pred h
Confidence 3
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.61 E-value=0.0024 Score=51.68 Aligned_cols=110 Identities=11% Similarity=0.021 Sum_probs=59.1
Q ss_pred ChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHh----cCCHHHHH
Q 007461 414 LYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGR----AKNLRQVE 489 (603)
Q Consensus 414 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~ 489 (603)
+.++|.+.|++..+.| .+... |...|...+.+++|.+.|++..+.| +...+..|...|.. .++.++|.
T Consensus 10 d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 3455555555555554 22221 4444444455555555555555542 44455555555554 55666666
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCC
Q 007461 490 KLWKEMERRKVTPDKVSYTTVISAYNR----AREFDMCVKFYNEFRMNG 534 (603)
Q Consensus 490 ~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~ 534 (603)
+.|++..+.| +...+..|...|.. .+++++|.++|++..+.|
T Consensus 82 ~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 82 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 6666665543 44455555555555 566666666666666554
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.60 E-value=0.00058 Score=50.35 Aligned_cols=80 Identities=9% Similarity=-0.045 Sum_probs=48.2
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhh
Q 007461 117 KSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGY 196 (603)
Q Consensus 117 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 196 (603)
...+..+...+...|++++|+..+++..+.. +.+...+..+...+...|++++|...+++.....+.+..++..+...+
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 87 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 3455566666666666666666666666554 334555666666666666666666666666665555555555555444
Q ss_pred h
Q 007461 197 N 197 (603)
Q Consensus 197 ~ 197 (603)
.
T Consensus 88 ~ 88 (91)
T 1na3_A 88 Q 88 (91)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.58 E-value=4.3e-05 Score=59.25 Aligned_cols=89 Identities=12% Similarity=0.025 Sum_probs=63.7
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCC-------hhh
Q 007461 151 DAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLD-------SGC 223 (603)
Q Consensus 151 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-------~~~ 223 (603)
+...+..+...+...|++++|...|++.....+.+..+|..+..++...|++++|+..+++..+.. |+ ...
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~ 80 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT--STAEHVAIRSKL 80 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC--SSTTSHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCccHHHHHHHH
Confidence 455677777788888888888888888888877788888888888888888888888888887753 33 333
Q ss_pred HHHHHHHHHHcCCHHHHH
Q 007461 224 YCQIMEAYYKIGDSEKVA 241 (603)
Q Consensus 224 ~~~ll~~~~~~g~~~~a~ 241 (603)
+..+..++...|+.+.|.
T Consensus 81 ~~~~~~~~~~~~~~~~a~ 98 (111)
T 2l6j_A 81 QYRLELAQGAVGSVQIPV 98 (111)
T ss_dssp HHHHHHHHHHHHCCCCCS
T ss_pred HHHHHHHHHHHHhHhhhH
Confidence 444444444444444443
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.45 E-value=0.001 Score=48.94 Aligned_cols=80 Identities=15% Similarity=0.037 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 007461 152 AHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAY 231 (603)
Q Consensus 152 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 231 (603)
...+..+...+...|++++|...+++.....+.+..++..+...+.+.|++++|+..|++..+.... +...+..+..++
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~l~~~~ 87 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CHHHHHHHHHHH
Confidence 3455555566666666666666666666665556666666666666666666666666666554221 334444444444
Q ss_pred H
Q 007461 232 Y 232 (603)
Q Consensus 232 ~ 232 (603)
.
T Consensus 88 ~ 88 (91)
T 1na3_A 88 Q 88 (91)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.40 E-value=0.0013 Score=65.71 Aligned_cols=26 Identities=4% Similarity=-0.248 Sum_probs=12.1
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHH
Q 007461 260 HMYKILCDSLGKSGRAFEALKFFRDM 285 (603)
Q Consensus 260 ~~~~~li~~~~~~g~~~~A~~~~~~m 285 (603)
.+++.|...|...|++++|+.+|++.
T Consensus 394 ~~l~nLa~~~~~~G~~~eA~~~~~~A 419 (490)
T 3n71_A 394 MAVMRAGLTNWHAGHIEVGHGMICKA 419 (490)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 34444444444444444444444443
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.38 E-value=0.00084 Score=67.16 Aligned_cols=92 Identities=14% Similarity=0.073 Sum_probs=50.1
Q ss_pred HHHcCCHHHHHHHHHHHHhC---CCCCCC-ccHHHHHHHHHHHhccCCHHHHHHHHHHHHHC-----CC-CCC-HHHHHH
Q 007461 231 YYKIGDSEKVAALFLECKSR---KLDSTP-FSTHMYKILCDSLGKSGRAFEALKFFRDMKEK-----GI-LED-PSIYAS 299 (603)
Q Consensus 231 ~~~~g~~~~a~~~~~~~~~~---~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g~-~p~-~~~~~~ 299 (603)
+...|++++|+.++++.... -..++. ....+++.|...|...|++++|+.++++.++. |. .|+ ..+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 34567777777776655432 111221 12456666777777777777777766665421 11 121 234555
Q ss_pred HHHHHHccCCHHHHHHHHHHHHH
Q 007461 300 LICSFASITEVKLAEELFKEAEE 322 (603)
Q Consensus 300 ll~~~~~~g~~~~a~~~~~~~~~ 322 (603)
|...|...|++++|..+++++.+
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~ 421 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYA 421 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH
Confidence 56666666666666666655543
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.25 E-value=0.0014 Score=49.52 Aligned_cols=64 Identities=14% Similarity=-0.049 Sum_probs=41.0
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHh
Q 007461 116 EKSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFIT 180 (603)
Q Consensus 116 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 180 (603)
+...+..+...+.+.|++++|+..|+...+.+ +.+..+|..+..+|...|++++|...|++...
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 45566666666666677777777777666654 33455666666666666666666666666554
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.25 E-value=0.0011 Score=50.16 Aligned_cols=66 Identities=14% Similarity=0.065 Sum_probs=54.5
Q ss_pred CCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHh
Q 007461 149 LPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKS 214 (603)
Q Consensus 149 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 214 (603)
+.+...+..+...+...|++++|+..|++..+..+.+..+|..+..+|...|++++|++.|++..+
T Consensus 4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 4 PEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 346677788888888888888888888888888887888888888888888888888888887665
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.07 E-value=0.0019 Score=52.75 Aligned_cols=71 Identities=13% Similarity=0.031 Sum_probs=49.2
Q ss_pred ccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHH----------HHHHHHHHHHhCCCCCChhhHHHHHHHHHH
Q 007461 164 RARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYY----------STILVYEKMKSAGIVLDSGCYCQIMEAYYK 233 (603)
Q Consensus 164 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----------~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 233 (603)
+.+.+++|++.++...+..|.+..+|+.+..++...++++ +|+..|++.++.+.. +..+|..+..+|..
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHH
Confidence 3456788888888888888888888888888888777654 666666666664322 44556666666655
Q ss_pred cC
Q 007461 234 IG 235 (603)
Q Consensus 234 ~g 235 (603)
.|
T Consensus 93 lg 94 (158)
T 1zu2_A 93 FA 94 (158)
T ss_dssp HH
T ss_pred hc
Confidence 53
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.87 E-value=0.0036 Score=46.95 Aligned_cols=65 Identities=11% Similarity=-0.001 Sum_probs=37.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhH
Q 007461 124 IRYLVQSKKWDSIVSLSEDFKIYNVLPDAH-TCSRLVASCVRARKFKIANTLLQVFITDGEIALLAF 189 (603)
Q Consensus 124 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 189 (603)
...+.+.|++++|+..++...+.. +.+.. .+..+..++...|++++|...|++.....+.+..++
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 344555666666666666665553 33444 555556666666666666666666665555444443
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.77 E-value=0.063 Score=50.59 Aligned_cols=71 Identities=13% Similarity=-0.028 Sum_probs=40.5
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHH
Q 007461 220 DSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEKGILEDPSIY 297 (603)
Q Consensus 220 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 297 (603)
++.+|..+...+...|++++|...+++....+. +...|..+...+.-.|++++|.+.|++.... .|...+|
T Consensus 276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~-----s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t~ 346 (372)
T 3ly7_A 276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLEM-----SWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANTL 346 (372)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHHH
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcChH
Confidence 455555555555555666666666666665541 2234555556666666666666666666554 3444444
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=96.53 E-value=0.034 Score=50.17 Aligned_cols=92 Identities=8% Similarity=0.037 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHcc-----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc-CCH
Q 007461 275 AFEALKFFRDMKEKGILED---PSIYASLICSFASI-----TEVKLAEELFKEAEEKGMLRDPEVCLKLVLMYIEE-GLV 345 (603)
Q Consensus 275 ~~~A~~~~~~m~~~g~~p~---~~~~~~ll~~~~~~-----g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~ 345 (603)
...|..++++.++. .|+ ...|..+...|... |+.++|++.|++.++.+..-+..++....+.++.. |+.
T Consensus 179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 45566666666664 444 45677777777773 88888888888888876433467777777777774 888
Q ss_pred HHHHHHHHHHHhCCCC--CCHhhHH
Q 007461 346 EKTLDVVESMKNAKLK--ISDCISC 368 (603)
Q Consensus 346 ~~a~~~~~~~~~~~~~--~~~~~~~ 368 (603)
+++.+.+++....++. |+....+
T Consensus 257 ~~a~~~L~kAL~a~p~~~P~~~lan 281 (301)
T 3u64_A 257 AGFDEALDRALAIDPESVPHNKLLV 281 (301)
T ss_dssp HHHHHHHHHHHHCCGGGCSSCHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCChhHHH
Confidence 8888888888877766 5543333
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.51 E-value=0.0055 Score=45.89 Aligned_cols=58 Identities=14% Similarity=0.174 Sum_probs=42.9
Q ss_pred HHHHHccCChHHHHHHHHHHHhcCCcchh-hHHHHHhhhhhcCcHHHHHHHHHHHHhCC
Q 007461 159 VASCVRARKFKIANTLLQVFITDGEIALL-AFNSAMGGYNKLHMYYSTILVYEKMKSAG 216 (603)
Q Consensus 159 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 216 (603)
...+.+.|++++|...++++....+.+.. +|..+...|...|++++|++.|++..+.+
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 34556677788888888887777776777 77777777777778888887777777653
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.46 E-value=0.084 Score=49.75 Aligned_cols=64 Identities=13% Similarity=0.010 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 007461 294 PSIYASLICSFASITEVKLAEELFKEAEEKGMLRDPEVCLKLVLMYIEEGLVEKTLDVVESMKNAK 359 (603)
Q Consensus 294 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 359 (603)
..+|..+...+...|++++|...++++...+ |+...|..+...+.-.|++++|.+.|++....+
T Consensus 277 a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~ 340 (372)
T 3ly7_A 277 SIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNLR 340 (372)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 3344433333333445555555555444443 344444444444445555555555555444443
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.44 E-value=0.014 Score=57.21 Aligned_cols=86 Identities=6% Similarity=0.016 Sum_probs=53.8
Q ss_pred cCCHHHHHHHHHHHHhC---CCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CC-CCCH-HHHHHHHH
Q 007461 482 AKNLRQVEKLWKEMERR---KVTPDK----VSYTTVISAYNRAREFDMCVKFYNEFRMN-----GG-VIDR-AIAGIMVG 547 (603)
Q Consensus 482 ~g~~~~a~~~~~~m~~~---~~~p~~----~~~~~li~~~~~~g~~~~a~~~~~~~~~~-----~~-~~~~-~~~~~l~~ 547 (603)
.|++++|+.++++.++. -+.|+. .+++.|..+|...|++++|+.++++.++- |. .|+. .+++.|..
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 45667777666665431 122332 35777777777777777777777766532 22 1332 35677777
Q ss_pred HHHccCCHHHHHHHHHHHHh
Q 007461 548 VFSKLSQIEELVKLLQDMKS 567 (603)
Q Consensus 548 ~~~~~g~~~~A~~~~~~m~~ 567 (603)
.|...|++++|..++++..+
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHH
Confidence 77788888888777777654
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.39 E-value=0.053 Score=58.68 Aligned_cols=157 Identities=13% Similarity=0.114 Sum_probs=110.2
Q ss_pred HHHHHhcCCHHHHHH-HHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCC
Q 007461 371 VNGFSKRRGYWAAVK-VYEQLISQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGR 449 (603)
Q Consensus 371 i~~~~~~~~~~~a~~-~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 449 (603)
.......+++++|.+ ++..+ ++......++..+.+.|..++|.++.+.-. .-.......|+
T Consensus 606 ~~~~~~~~~~~~a~~~~l~~i------~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~ 667 (814)
T 3mkq_A 606 FQTLTLRGEIEEAIENVLPNV------EGKDSLTKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQ 667 (814)
T ss_dssp HHHHHHTTCHHHHHHHTGGGC------CCHHHHHHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTC
T ss_pred HhHHHHhCCHHHHHHHHHhcC------CchHHHHHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCC
Confidence 344456788888877 55221 212334777888888999998887663211 11234566799
Q ss_pred HHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 007461 450 IRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNRAREFDMCVKFYNE 529 (603)
Q Consensus 450 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 529 (603)
+++|.++.+.+ .+...|..+...+.+.|+++.|++.|.++. | |..+...|...|+.+...++.+.
T Consensus 668 ~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~------d---~~~l~~l~~~~~~~~~~~~~~~~ 732 (814)
T 3mkq_A 668 LTLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAH------D---LESLFLLHSSFNNKEGLVTLAKD 732 (814)
T ss_dssp HHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHT------C---HHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHcc------C---hhhhHHHHHHcCCHHHHHHHHHH
Confidence 99999886543 477899999999999999999999999885 2 33555556668888887777776
Q ss_pred HHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 007461 530 FRMNGGVIDRAIAGIMVGVFSKLSQIEELVKLLQDMK 566 (603)
Q Consensus 530 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 566 (603)
....|. ++.-..+|.+.|++++|++++.++.
T Consensus 733 a~~~~~------~~~A~~~~~~~g~~~~a~~~~~~~~ 763 (814)
T 3mkq_A 733 AETTGK------FNLAFNAYWIAGDIQGAKDLLIKSQ 763 (814)
T ss_dssp HHHTTC------HHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHcCc------hHHHHHHHHHcCCHHHHHHHHHHcC
Confidence 666542 3444556777899999999887763
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=96.34 E-value=0.045 Score=40.33 Aligned_cols=67 Identities=9% Similarity=-0.051 Sum_probs=40.3
Q ss_pred CCHHHHHHHHHHHHccCC---hHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCC
Q 007461 150 PDAHTCSRLVASCVRARK---FKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAG 216 (603)
Q Consensus 150 ~~~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 216 (603)
.+...+..+..++...++ .++|..++++....+|.++.+...+...+.+.|++++|+..|+++.+..
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 445555555555443332 4666666666666666666666666666666666666666666666543
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.29 E-value=0.023 Score=55.81 Aligned_cols=90 Identities=8% Similarity=-0.090 Sum_probs=54.7
Q ss_pred HHHhcCCHHHHHHHHHHHHhCC---CCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CC-CCCH-HHHH
Q 007461 478 MHGRAKNLRQVEKLWKEMERRK---VTPDK----VSYTTVISAYNRAREFDMCVKFYNEFRMN-----GG-VIDR-AIAG 543 (603)
Q Consensus 478 ~~~~~g~~~~a~~~~~~m~~~~---~~p~~----~~~~~li~~~~~~g~~~~a~~~~~~~~~~-----~~-~~~~-~~~~ 543 (603)
.+...|++++|+.++++..+.. +.|+. .+++.+..+|...|++++|+.+++++++- |. .|+. .+++
T Consensus 296 ~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~ 375 (429)
T 3qwp_A 296 ELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVM 375 (429)
T ss_dssp HHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHH
T ss_pred HHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHH
Confidence 3445566666666666665321 22322 34677777777777777777777766532 21 1222 3566
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHh
Q 007461 544 IMVGVFSKLSQIEELVKLLQDMKS 567 (603)
Q Consensus 544 ~l~~~~~~~g~~~~A~~~~~~m~~ 567 (603)
.|...|...|++++|..++++..+
T Consensus 376 nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 376 KVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Confidence 777777777777777777776654
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.26 E-value=0.28 Score=40.59 Aligned_cols=99 Identities=10% Similarity=0.077 Sum_probs=56.8
Q ss_pred HccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCHHHHHH
Q 007461 163 VRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAA 242 (603)
Q Consensus 163 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~ 242 (603)
...|+++.|.++.+.+ .+...|..|.......|+++-|..+|.+... +..+.-.|.-.|+.+...+
T Consensus 16 L~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHH
T ss_pred HhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHH
Confidence 3456666666555543 2455666666666666666666666655432 3344445555666666655
Q ss_pred HHHHHHhCCCCCCCccHHHHHHHHHHHhccCCHHHHHHHHHH
Q 007461 243 LFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRD 284 (603)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 284 (603)
+-+....++- ++.....+.-.|++++++++|.+
T Consensus 82 la~iA~~~g~---------~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 82 MQNIAQTRED---------FGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHHHTTC---------HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHCcc---------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 5554444432 55555666666777777776644
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=96.25 E-value=0.00068 Score=65.11 Aligned_cols=232 Identities=11% Similarity=0.108 Sum_probs=131.5
Q ss_pred hhHHHHHHhcCCCChHHHHHHHHHHhhCCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 007461 83 FDSFLHGMLKDPQTQELAYDYYNEAKKLPEFRPEKSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASC 162 (603)
Q Consensus 83 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 162 (603)
|..+|....+.+..++ ...++..+++. ..++.+=+.|+-+|++.++..+..+.+. .|+..-...+.+-|
T Consensus 86 y~eVi~~A~~~~~~ed-Lv~yL~MaRk~---~ke~~IDteLi~ayAk~~rL~elEefl~-------~~N~A~iq~VGDrc 154 (624)
T 3lvg_A 86 YMEVVQAANTSGNWEE-LVKYLQMARKK---ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRC 154 (624)
T ss_dssp SSHHHHHTTTSSCCTT-HHHHHHTTSTT---CCSTTTTHHHHHHHHTSCSSSTTTSTTS-------CCSSSCTHHHHHHH
T ss_pred HHHHHHHHHhCCCHHH-HHHHHHHHHHH---hcccccHHHHHHHHHhhCcHHHHHHHHc-------CCCcccHHHHHHHH
Confidence 5556666555555554 44444444432 2233334455556666555444333221 24444445555555
Q ss_pred HccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCHHHHHH
Q 007461 163 VRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAA 242 (603)
Q Consensus 163 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~ 242 (603)
...|.++.|.-+|. +..-|..|...+.+.|+++.|.+.-++ .-++.||..+-.+|...+++.-|.-
T Consensus 155 f~e~lYeAAKilys--------~isN~akLAstLV~L~~yq~AVdaArK------Ans~ktWKeV~~ACvd~~EfrLAqi 220 (624)
T 3lvg_A 155 YDEKMYDAAKLLYN--------NVSNFGRLASTLVHLGEYQAAVDGARK------ANSTRTWKEVCFACVDGKEFRLAQM 220 (624)
T ss_dssp HHSCCSTTSSTTGG--------GSCCCTTTSSSSSSCSGGGSSTTTTTT------CCSSCSHHHHTHHHHHSCTTTTTTH
T ss_pred HHccCHHHHHHHHH--------hCccHHHHHHHHHHHHHHHHHHHHHHh------cCChhHHHHHHHHHhCchHHHHHHH
Confidence 55555555544443 333455666677777777777654332 2356689999999999998877755
Q ss_pred HHHHHHhCCCCCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 007461 243 LFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEKGILEDPSIYASLICSFASITEVKLAEELFKEAEE 322 (603)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 322 (603)
.--.+.-..-. ...++..|-..|.+++-+.+++.-... -+.....|+-|.-.|++- ..++..+-++..-.
T Consensus 221 cGLniIvhade--------L~elv~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTELaILYsKY-~PeKlmEHlklf~s 290 (624)
T 3lvg_A 221 CGLHIVVHADE--------LEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKF-KPQKMREHLELFWS 290 (624)
T ss_dssp HHHHHHCCSSC--------CSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSS
T ss_pred hcchhcccHHH--------HHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhHHHHHHHHHHHHhc-CHHHHHHHHHHHHH
Confidence 44333322211 334677888899999999988877632 133556677777667654 33433333332211
Q ss_pred c-CCCC------CHHHHHHHHHHHHHcCCHHHHH
Q 007461 323 K-GMLR------DPEVCLKLVLMYIEEGLVEKTL 349 (603)
Q Consensus 323 ~-~~~~------~~~~~~~l~~~~~~~g~~~~a~ 349 (603)
+ +++- ....|.-++-.|.+-.+++.|.
T Consensus 291 riNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 291 RVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp SSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred hccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 1 2211 2345667777777777777664
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=96.19 E-value=0.31 Score=37.82 Aligned_cols=59 Identities=17% Similarity=0.162 Sum_probs=23.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcC
Q 007461 405 IINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKG 464 (603)
Q Consensus 405 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 464 (603)
.++.+...|.-++-.+++..+... .+|++...-.+..+|.+.|+..+|.+++.+.-+.|
T Consensus 97 ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 97 ALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 333344444444444444443221 13333344444444444444444444444444333
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.18 E-value=0.065 Score=57.97 Aligned_cols=132 Identities=11% Similarity=0.150 Sum_probs=85.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhh
Q 007461 119 TLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNK 198 (603)
Q Consensus 119 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 198 (603)
....++..+.+.|.++.|+++.++.. .-.......|++++|.++.+.+ .+...|..+...+.+
T Consensus 631 ~~~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~~~A~~~~~~~-----~~~~~W~~la~~al~ 693 (814)
T 3mkq_A 631 SLTKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQLTLARDLLTDE-----SAEMKWRALGDASLQ 693 (814)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCHHHHHHHHTTC-----CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCHHHHHHHHHhh-----CcHhHHHHHHHHHHH
Confidence 34667777777888888776553211 1123345568888887775432 466788888888888
Q ss_pred cCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccCCHHHH
Q 007461 199 LHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEA 278 (603)
Q Consensus 199 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 278 (603)
.++++.|.++|.++.. |..+...|...|+.+...++-+.....+. ++.....|.+.|++++|
T Consensus 694 ~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~~---------~~~A~~~~~~~g~~~~a 755 (814)
T 3mkq_A 694 RFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTGK---------FNLAFNAYWIAGDIQGA 755 (814)
T ss_dssp TTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHH
T ss_pred cCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcCc---------hHHHHHHHHHcCCHHHH
Confidence 8888888888887643 44555566667777766666555555432 55555566667777777
Q ss_pred HHHHHHH
Q 007461 279 LKFFRDM 285 (603)
Q Consensus 279 ~~~~~~m 285 (603)
+++|.++
T Consensus 756 ~~~~~~~ 762 (814)
T 3mkq_A 756 KDLLIKS 762 (814)
T ss_dssp HHHHHHT
T ss_pred HHHHHHc
Confidence 7766554
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=96.18 E-value=0.063 Score=39.48 Aligned_cols=70 Identities=13% Similarity=0.031 Sum_probs=48.7
Q ss_pred CCCHHhHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCc
Q 007461 114 RPEKSTLKLLIRYLVQSKK---WDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEI 184 (603)
Q Consensus 114 ~p~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 184 (603)
+.++..+..+..++...++ .++|..++++..+.+ +.+..+...+...+.+.|++++|+..|+.+....+.
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 3566667777776654444 577777777777765 556667777777777777777777777777776554
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.13 E-value=0.029 Score=55.03 Aligned_cols=86 Identities=7% Similarity=-0.044 Sum_probs=56.0
Q ss_pred cCCHHHHHHHHHHHHHc---CCCCC----HhHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----C-CCCCH-HHHHHHHH
Q 007461 447 TGRIRDAMWLVAKMKAK---GCEPN----VWIYNSLMDMHGRAKNLRQVEKLWKEMERR-----K-VTPDK-VSYTTVIS 512 (603)
Q Consensus 447 ~g~~~~A~~~~~~m~~~---~~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----~-~~p~~-~~~~~li~ 512 (603)
.|++++|+.++++.++. -+.|+ ..+++.|..+|...|++++|+.++++.++. | -.|+. .+++.|..
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 46677777777665442 12222 356677777777777777777777766431 2 12333 35888888
Q ss_pred HHHhcCCHHHHHHHHHHHHH
Q 007461 513 AYNRAREFDMCVKFYNEFRM 532 (603)
Q Consensus 513 ~~~~~g~~~~a~~~~~~~~~ 532 (603)
.|...|++++|+.+++++.+
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHH
Confidence 88888888888888887754
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=95.93 E-value=0.071 Score=48.10 Aligned_cols=106 Identities=8% Similarity=0.081 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHh-----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc-CCH
Q 007461 485 LRQVEKLWKEMERRKVTPD---KVSYTTVISAYNR-----AREFDMCVKFYNEFRMNGGVIDRAIAGIMVGVFSKL-SQI 555 (603)
Q Consensus 485 ~~~a~~~~~~m~~~~~~p~---~~~~~~li~~~~~-----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~ 555 (603)
...|...+++.++. .|+ ...|..+...|.+ .|+.++|.+.|++.++.+..-+..++..+.+.+++. |+.
T Consensus 179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 45566666666643 455 3456777777776 377777777777777754432355556667777663 777
Q ss_pred HHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCcHHHHHHHHhhc
Q 007461 556 EELVKLLQDMKSEGTK--LDERLYHSAMNALRDAGLQMQAQWLQQNF 600 (603)
Q Consensus 556 ~~A~~~~~~m~~~g~~--~~~~~~~~ll~a~~~~g~~~~a~~~~~~~ 600 (603)
+++.+.+++.+..... |+....+ .+..++|++++++.
T Consensus 257 ~~a~~~L~kAL~a~p~~~P~~~lan--------~~~q~eA~~LL~~~ 295 (301)
T 3u64_A 257 AGFDEALDRALAIDPESVPHNKLLV--------ILSQKRARWLKAHV 295 (301)
T ss_dssp HHHHHHHHHHHHCCGGGCSSCHHHH--------HHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHcCCCCCCCChhHHH--------HHHHHHHHHHHHHh
Confidence 7777777777776554 5433322 23345555555543
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=95.87 E-value=0.067 Score=52.54 Aligned_cols=90 Identities=7% Similarity=-0.002 Sum_probs=49.6
Q ss_pred HHHhccCCHHHHHHHHHHHHHCC---CCCC----HHHHHHHHHHHHccCCHHHHHHHHHHHHHc-----CC-CC-CHHHH
Q 007461 267 DSLGKSGRAFEALKFFRDMKEKG---ILED----PSIYASLICSFASITEVKLAEELFKEAEEK-----GM-LR-DPEVC 332 (603)
Q Consensus 267 ~~~~~~g~~~~A~~~~~~m~~~g---~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-----~~-~~-~~~~~ 332 (603)
..+.+.|++++|+.++++.++.. +.|+ ..+++.+..+|...|++++|..+++++++. |. .| ...++
T Consensus 295 e~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l 374 (429)
T 3qwp_A 295 EELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQV 374 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH
T ss_pred HHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHH
Confidence 33445556666666666655321 1111 234556666666666666666666655532 21 11 13445
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Q 007461 333 LKLVLMYIEEGLVEKTLDVVESMK 356 (603)
Q Consensus 333 ~~l~~~~~~~g~~~~a~~~~~~~~ 356 (603)
+.|...|...|++++|..++++..
T Consensus 375 ~nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 375 MKVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHH
Confidence 666667777777777777666654
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.85 E-value=0.3 Score=40.47 Aligned_cols=131 Identities=13% Similarity=0.093 Sum_probs=97.2
Q ss_pred HHHHHccCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 007461 441 VAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNRAREF 520 (603)
Q Consensus 441 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 520 (603)
.....+.|+++.|.++.+++ .+...|..|.......|+++-|++.|.+.. | +..+.-.|...|+.
T Consensus 12 F~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~------D---~~~L~~Ly~~tg~~ 76 (177)
T 3mkq_B 12 FDLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQH------S---FDKLSFLYLVTGDV 76 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT------C---HHHHHHHHHHHTCH
T ss_pred HHHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhC------C---HHHHHHHHHHhCCH
Confidence 34456789999999998765 478899999999999999999999999875 3 33445556667888
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHhhc
Q 007461 521 DMCVKFYNEFRMNGGVIDRAIAGIMVGVFSKLSQIEELVKLLQDMKSEGTKLDERLYHSAMNALRDAGLQMQAQWLQQNF 600 (603)
Q Consensus 521 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~a~~~~g~~~~a~~~~~~~ 600 (603)
+...++-+.....|- ++.-...+.-.|+++++++++.+. |-.| ...-.....|..+.|.++.+++
T Consensus 77 e~L~kla~iA~~~g~------~n~af~~~l~lGdv~~~i~lL~~~---~r~~------eA~~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 77 NKLSKMQNIAQTRED------FGSMLLNTFYNNSTKERSSIFAEG---GSLP------LAYAVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHHT---TCHH------HHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCcc------HHHHHHHHHHcCCHHHHHHHHHHC---CChH------HHHHHHHHcCcHHHHHHHHHHh
Confidence 887777776665531 445555677789999999999665 4322 2222345588899999998876
Q ss_pred c
Q 007461 601 E 601 (603)
Q Consensus 601 ~ 601 (603)
.
T Consensus 142 ~ 142 (177)
T 3mkq_B 142 E 142 (177)
T ss_dssp T
T ss_pred C
Confidence 4
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=95.80 E-value=0.11 Score=41.89 Aligned_cols=77 Identities=13% Similarity=0.028 Sum_probs=37.6
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHccC---ChHHHHHHHHHHHhcC-C-cchhhHHHHHhhhhhcCcHHHHHHHHHH
Q 007461 137 VSLSEDFKIYNVLPDAHTCSRLVASCVRAR---KFKIANTLLQVFITDG-E-IALLAFNSAMGGYNKLHMYYSTILVYEK 211 (603)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~-~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 211 (603)
.+-|++..+.+ +++..+.-.+..++++++ +.++++.+|+.+.+.+ | .....+-.+.-+|.+.|++++|++.++.
T Consensus 18 ~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~ 96 (152)
T 1pc2_A 18 EKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRG 96 (152)
T ss_dssp HHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 33333333333 244444444555555554 3345555555555544 2 2344444455555555555555555555
Q ss_pred HHh
Q 007461 212 MKS 214 (603)
Q Consensus 212 m~~ 214 (603)
+++
T Consensus 97 lL~ 99 (152)
T 1pc2_A 97 LLQ 99 (152)
T ss_dssp HHH
T ss_pred HHh
Confidence 555
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=95.76 E-value=0.097 Score=39.46 Aligned_cols=73 Identities=8% Similarity=-0.105 Sum_probs=44.4
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC------CCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhh
Q 007461 116 EKSTLKLLIRYLVQSKKWDSIVSLSEDFKIYN------VLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLA 188 (603)
Q Consensus 116 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 188 (603)
+...+..+...+.+.|++..|..+++...+.. ..+....+..+..++.+.|+++.|...++++....|.+..+
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~ 82 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRA 82 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHH
Confidence 44555666777777777777777777665431 12334556666666666666666666666666655544443
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=95.59 E-value=3.1 Score=44.51 Aligned_cols=271 Identities=10% Similarity=-0.005 Sum_probs=135.3
Q ss_pred HccCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-------CCCHhhHHHHHHHHH
Q 007461 305 ASITEVKLAEELFKEAEEKGMLRDP--EVCLKLVLMYIEEGLVEKTLDVVESMKNAKL-------KISDCISCAIVNGFS 375 (603)
Q Consensus 305 ~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-------~~~~~~~~~li~~~~ 375 (603)
...|+.+++..+++.....+-..+. ..-..+.-+...+|..+++.+++......+- .+....-.++.-+++
T Consensus 385 Ih~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla 464 (963)
T 4ady_A 385 IHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLA 464 (963)
T ss_dssp HTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHH
T ss_pred hccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHH
Confidence 3556666666666554432101222 2333444556666666667776665443211 011111223333333
Q ss_pred hcCC-HHHHHHHHHHHHHcCCCCCHHH--HH--HHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCCH
Q 007461 376 KRRG-YWAAVKVYEQLISQGCIPGQVT--YA--SIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRI 450 (603)
Q Consensus 376 ~~~~-~~~a~~~~~~m~~~g~~p~~~~--~~--~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 450 (603)
-.|. -+++.+.+..+.... +... .. .+...+...|+.+....++..+.+.. ..+..-...+.-++.-.|+.
T Consensus 465 ~~GS~~eev~e~L~~~L~dd---~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~-~e~vrR~aalgLGll~~g~~ 540 (963)
T 4ady_A 465 AMGSANIEVYEALKEVLYND---SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ-HGNITRGLAVGLALINYGRQ 540 (963)
T ss_dssp STTCCCHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCG
T ss_pred hcCCCCHHHHHHHHHHHhcC---CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC-cHHHHHHHHHHHHhhhCCCh
Confidence 3332 245566666655432 2211 11 22233445677777777777766542 22222223333334467888
Q ss_pred HHHHHHHHHHHHcCCCCCHhHHH--HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 007461 451 RDAMWLVAKMKAKGCEPNVWIYN--SLMDMHGRAKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNRAREFDMCVKFYN 528 (603)
Q Consensus 451 ~~A~~~~~~m~~~~~~p~~~~~~--~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 528 (603)
+.+..+++.+... -.|....-. ++.-+|+-.|+.....+++..+.+. ...+......+.-++...|+.+.+.++++
T Consensus 541 e~~~~li~~L~~~-~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d-~~d~VRraAViaLGlI~~g~~e~v~rlv~ 618 (963)
T 4ady_A 541 ELADDLITKMLAS-DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD-SNDDVRRAAVIALGFVLLRDYTTVPRIVQ 618 (963)
T ss_dssp GGGHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTSSSCSSHHHHTT
T ss_pred HHHHHHHHHHHhC-CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC-CcHHHHHHHHHHHHhhccCCHHHHHHHHH
Confidence 8888888887763 122222222 2334567778887777788888764 22233333333344555677777777776
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHccCCH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 007461 529 EFRMNGGVIDRAIAGIMVGVFSKLSQI-EELVKLLQDMKSEGTKLDERLYHSAMNALR 585 (603)
Q Consensus 529 ~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~m~~~g~~~~~~~~~~ll~a~~ 585 (603)
.+.+.+ .|....--.+.-+....|.. .+++.++..+... +|..+-...+-++.
T Consensus 619 ~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~D---~d~~Vrq~Ai~ALG 672 (963)
T 4ady_A 619 LLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTKD---PVDFVRQAAMIALS 672 (963)
T ss_dssp TGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHTC---SSHHHHHHHHHHHH
T ss_pred HHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHccC---CCHHHHHHHHHHHH
Confidence 555532 23333223333344444432 6788888888642 45444444444443
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=95.44 E-value=0.14 Score=41.28 Aligned_cols=78 Identities=13% Similarity=0.115 Sum_probs=33.5
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHccCCHHHHHHHH
Q 007461 488 VEKLWKEMERRKVTPDKVSYTTVISAYNRAR---EFDMCVKFYNEFRMNGGVI--DRAIAGIMVGVFSKLSQIEELVKLL 562 (603)
Q Consensus 488 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g---~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~ 562 (603)
+++-|.+....+. ++..+...+..++++.+ +.++++.++++..+.+ .| ....+-.+.-++.+.|++++|.+.+
T Consensus 17 ~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~ 94 (152)
T 1pc2_A 17 FEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKYV 94 (152)
T ss_dssp HHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHHHH
Confidence 3334443333332 34444444444444444 3345555555554432 11 1122223333445555555555555
Q ss_pred HHHHh
Q 007461 563 QDMKS 567 (603)
Q Consensus 563 ~~m~~ 567 (603)
+.+++
T Consensus 95 ~~lL~ 99 (152)
T 1pc2_A 95 RGLLQ 99 (152)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 55553
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.38 E-value=2.3 Score=41.76 Aligned_cols=94 Identities=12% Similarity=0.069 Sum_probs=50.8
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHc--CCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHh----CCCCCC--Hhh
Q 007461 298 ASLICSFASITEVKLAEELFKEAEEK--GMLRD---PEVCLKLVLMYIEEGLVEKTLDVVESMKN----AKLKIS--DCI 366 (603)
Q Consensus 298 ~~ll~~~~~~g~~~~a~~~~~~~~~~--~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~--~~~ 366 (603)
..|...+...|++.+|..++..+... +.... ...+..-++.|...+++.+|..++.++.. ....|+ ...
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~ 220 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEY 220 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHH
Confidence 34555556666666666666665432 11111 23455556666677777777666666532 111111 122
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 007461 367 SCAIVNGFSKRRGYWAAVKVYEQLI 391 (603)
Q Consensus 367 ~~~li~~~~~~~~~~~a~~~~~~m~ 391 (603)
+..++..+...+++.+|-+.|.+..
T Consensus 221 ~~~~~~~~~~e~~y~~a~~~y~e~~ 245 (445)
T 4b4t_P 221 YNLLVKISLHKREYLEVAQYLQEIY 245 (445)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 4555666666777777766666554
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=95.07 E-value=0.25 Score=37.08 Aligned_cols=64 Identities=2% Similarity=-0.057 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCC------CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 007461 505 VSYTTVISAYNRAREFDMCVKFYNEFRMNG------GVIDRAIAGIMVGVFSKLSQIEELVKLLQDMKSE 568 (603)
Q Consensus 505 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 568 (603)
.-+..+...+...|+++.|...++.+.+.. ..+...++..+..++.+.|++++|+..++++.+.
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 334455666666666666666666655431 1123445666666777777777777777766653
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=94.78 E-value=1.1 Score=34.86 Aligned_cols=67 Identities=12% Similarity=0.053 Sum_probs=39.7
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 007461 469 VWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNRAREFDMCVKFYNEFRMNGGV 536 (603)
Q Consensus 469 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 536 (603)
.......++.....|+-++-.+++.++.. +.+|+....-.+..+|.+.|+..++.+++.++-++|++
T Consensus 91 se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 91 NEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 33445555566666666666666666433 33555666666666666666666666666666666543
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=94.76 E-value=0.37 Score=38.35 Aligned_cols=114 Identities=15% Similarity=0.129 Sum_probs=69.4
Q ss_pred CHhHHHHHHHHHHhcCCH------HHHHHHHHHHHhCCCCCCHH----HHHHHHH---HHHhcCCHHHHHHHHHHHHHCC
Q 007461 468 NVWIYNSLMDMHGRAKNL------RQVEKLWKEMERRKVTPDKV----SYTTVIS---AYNRAREFDMCVKFYNEFRMNG 534 (603)
Q Consensus 468 ~~~~~~~li~~~~~~g~~------~~a~~~~~~m~~~~~~p~~~----~~~~li~---~~~~~g~~~~a~~~~~~~~~~~ 534 (603)
|..+|-..+....+.|++ ++..++|++... .++|+.. .|-.+.- .+...+++++|.++|+.+++..
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia-~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~h 90 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIE-ALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARANC 90 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHH-HSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHH-cCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 555555555555555665 566666666654 2444421 1111111 1123378888888888887654
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 007461 535 GVIDRAIAGIMVGVFSKLSQIEELVKLLQDMKSEGTKLDERLYHSAMNAL 584 (603)
Q Consensus 535 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~a~ 584 (603)
-+. ..+|-.....-.+.|++..|.+++.+.+..+.+ +...+...++-+
T Consensus 91 KkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k-~~~~le~a~~nl 138 (161)
T 4h7y_A 91 KKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAV-PLEMLEIALRNL 138 (161)
T ss_dssp TTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB-CHHHHHHHHHHH
T ss_pred HHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC-cHHHHHHHHHhh
Confidence 344 667777777777889999999999888876644 345555555444
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=94.13 E-value=1.8 Score=34.54 Aligned_cols=54 Identities=7% Similarity=-0.032 Sum_probs=32.4
Q ss_pred CcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC
Q 007461 200 HMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDS 254 (603)
Q Consensus 200 ~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 254 (603)
+++++|.++|+.+++.+-.- ...|......-.+.|+++.|++++......++.|
T Consensus 74 ~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred cCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 56666666666665542222 4555555566666777777777777666655543
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=92.99 E-value=6.2e-05 Score=72.05 Aligned_cols=262 Identities=13% Similarity=0.125 Sum_probs=152.8
Q ss_pred chhHHHHHHhcCCCChHHHHHHHHHHhhCCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 007461 82 KFDSFLHGMLKDPQTQELAYDYYNEAKKLPEFRPEKSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVAS 161 (603)
Q Consensus 82 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 161 (603)
.|..+-++....+...+ |++-| ++ .-|+..|..++....+.|.+++.+..+...++.. .++..=+.|+-+
T Consensus 56 VWs~LgkAqL~~~~v~e-AIdsy---Ik----A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi~a 125 (624)
T 3lvg_A 56 VWSQLAKAQLQKGMVKE-AIDSY---IK----ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFA 125 (624)
T ss_dssp CSSSHHHHTTTSSSCTT-TTTSS---CC----CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHHHH
T ss_pred HHHHHHHHHHccCchHH-HHHHH---Hh----CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHHHH
Confidence 37777777777766655 54433 11 2356677778888888888888777777665543 333444467777
Q ss_pred HHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCHHHHH
Q 007461 162 CVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVA 241 (603)
Q Consensus 162 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~ 241 (603)
|++.+++.+..+.+ ..++..-...+..-|...|.++.|.-+|..+. -|..|...+.+.|++..|.
T Consensus 126 yAk~~rL~elEefl------~~~N~A~iq~VGDrcf~e~lYeAAKilys~is---------N~akLAstLV~L~~yq~AV 190 (624)
T 3lvg_A 126 LAKTNRLAELEEFI------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS---------NFGRLASTLVHLGEYQAAV 190 (624)
T ss_dssp HHTSCSSSTTTSTT------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSC---------CCTTTSSSSSSCSGGGSST
T ss_pred HHhhCcHHHHHHHH------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCc---------cHHHHHHHHHHHHHHHHHH
Confidence 77777655433221 12444445556666666666666665554332 2333444555566655554
Q ss_pred HHHHHHHhCCCCCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 007461 242 ALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEKGILEDPSIYASLICSFASITEVKLAEELFKEAE 321 (603)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 321 (603)
+.-++ ..++.+|-.+..+|...+.+.-|.-+--.++-. || -...++..|.+.|.+++...+++...
T Consensus 191 daArK---------Ans~ktWKeV~~ACvd~~EfrLAqicGLniIvh---ad--eL~elv~~YE~~G~f~ELIsLlEagl 256 (624)
T 3lvg_A 191 DGARK---------ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH---AD--ELEELINYYQDRGYFEELITMLEAAL 256 (624)
T ss_dssp TTTTT---------CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC---SS--CCSGGGSSSSTTCCCTTSTTTHHHHT
T ss_pred HHHHh---------cCChhHHHHHHHHHhCchHHHHHHHhcchhccc---HH--HHHHHHHHHHhCCCHHHHHHHHHHHh
Confidence 33211 112357999999999999888776665444422 11 23345666778899998888888776
Q ss_pred HcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-CCCC------CCHhhHHHHHHHHHhcCCHHHHH
Q 007461 322 EKGMLRDPEVCLKLVLMYIEEGLVEKTLDVVESMKN-AKLK------ISDCISCAIVNGFSKRRGYWAAV 384 (603)
Q Consensus 322 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~------~~~~~~~~li~~~~~~~~~~~a~ 384 (603)
... ......|+-|.-.|++- +.++..+.++..-. .+++ -....|.-++-.|.+-.++|.|.
T Consensus 257 glE-rAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 257 GLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp TST-TCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred CCC-chhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 322 45778888888888875 34444443332211 1221 01223666666666666666554
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=92.37 E-value=0.63 Score=35.99 Aligned_cols=26 Identities=12% Similarity=0.138 Sum_probs=12.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCC
Q 007461 226 QIMEAYYKIGDSEKVAALFLECKSRK 251 (603)
Q Consensus 226 ~ll~~~~~~g~~~~a~~~~~~~~~~~ 251 (603)
.|.-++.+.|++++|++.++.+.+..
T Consensus 79 ~LAvg~yklg~Y~~A~~~~~~lL~~e 104 (126)
T 1nzn_A 79 YLAVGNYRLKEYEKALKYVRGLLQTE 104 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhC
Confidence 34444555555555555555554443
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=92.01 E-value=1.2 Score=34.47 Aligned_cols=80 Identities=11% Similarity=-0.008 Sum_probs=37.1
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHH---HHHHHHHHHHcCCC-cCHhhHHHHHHHHHccCCHHHHHHHHH
Q 007461 383 AVKVYEQLISQGCIPGQVTYASIINAYCRIALYSK---AEKVFIEMQQKGFD-KCVVAYSSMVAMYGKTGRIRDAMWLVA 458 (603)
Q Consensus 383 a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~---a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~ 458 (603)
+.+-|......|. ++..+--.+..++.+..+... ++.+++.+.+.+.+ -.....-.|.-++.+.|++++|.+.++
T Consensus 20 ~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~ 98 (126)
T 1nzn_A 20 FEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVR 98 (126)
T ss_dssp HHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 3333443333332 444444444445555444333 55555555544311 122333344445556666666666666
Q ss_pred HHHHc
Q 007461 459 KMKAK 463 (603)
Q Consensus 459 ~m~~~ 463 (603)
.+++.
T Consensus 99 ~lL~~ 103 (126)
T 1nzn_A 99 GLLQT 103 (126)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 65553
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.64 E-value=11 Score=36.95 Aligned_cols=255 Identities=11% Similarity=0.106 Sum_probs=141.9
Q ss_pred HHHHHHHHHh----hCCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH----ccCChHH
Q 007461 99 LAYDYYNEAK----KLPEFRPEKSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCV----RARKFKI 170 (603)
Q Consensus 99 ~a~~~~~~~~----~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~----~~~~~~~ 170 (603)
.|++-+-.+. ...+..........++..|...|+|+...+.+..+.+..... ..+...+++.+. .....+.
T Consensus 34 ~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~ql-k~ai~~~V~~~~~~l~~~~~~d~ 112 (445)
T 4b4t_P 34 SALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQL-KLSIQYMIQKVMEYLKSSKSLDL 112 (445)
T ss_dssp HHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTS-HHHHHHHHHHHHHHHHHHCTTHH
T ss_pred HHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHhcCCchhH
Confidence 3666553332 233445567778889999999999999988887766543222 222334443332 2332221
Q ss_pred --HHHHHHHHHhc--CCc-----chhhHHHHHhhhhhcCcHHHHHHHHHHHHhC--CCCCC---hhhHHHHHHHHHHcCC
Q 007461 171 --ANTLLQVFITD--GEI-----ALLAFNSAMGGYNKLHMYYSTILVYEKMKSA--GIVLD---SGCYCQIMEAYYKIGD 236 (603)
Q Consensus 171 --a~~~~~~~~~~--~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~--~~~p~---~~~~~~ll~~~~~~g~ 236 (603)
-..+.+.+... +.. .......|...|...|++.+|..++..+... |.... ...+...++.|...++
T Consensus 113 ~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d 192 (445)
T 4b4t_P 113 NTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGD 192 (445)
T ss_dssp HHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCC
Confidence 12222221111 111 2234467788899999999999999987642 22111 3456777888999999
Q ss_pred HHHHHHHHHHHHhC---CCCCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHC-CCCCCHHHHHH-----HHHHHHcc
Q 007461 237 SEKVAALFLECKSR---KLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEK-GILEDPSIYAS-----LICSFASI 307 (603)
Q Consensus 237 ~~~a~~~~~~~~~~---~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~-----ll~~~~~~ 307 (603)
+..|..+++++... ...+...-...+...+..+...+++.+|.+.|.+.... ....|...+.. ++.... .
T Consensus 193 ~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~iL-a 271 (445)
T 4b4t_P 193 YSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLVL-S 271 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH-S
T ss_pred HHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHh-C
Confidence 99999999887532 11111112345677788888899999999888877542 11112222221 121111 1
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHH
Q 007461 308 TEVKLAEELFKEAEEKGMLRDPEVCLKLVLMYIEE--GLVEKTLDVVESM 355 (603)
Q Consensus 308 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~a~~~~~~~ 355 (603)
+....-..++.........++...+..++.+|... .+++...+.|...
T Consensus 272 ~~~~~~~~ll~~~~~~~~~~~l~~~~~L~k~f~~~~L~~~~~~~~~~~~~ 321 (445)
T 4b4t_P 272 PYGNLQNDLIHKIQNDNNLKKLESQESLVKLFTTNELMRWPIVQKTYEPV 321 (445)
T ss_dssp SCSSTTHHHHHSHHHHSSCHHHHHHHHHHHHHHHCCSSSHHHHHHHTCSS
T ss_pred CCCchHHHHHHHHhhcccccccHHHHHHHHHHHhchHhhhHHHHHHHHHH
Confidence 11111122222222222224566777777777654 3456665555543
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.54 E-value=1.1 Score=46.89 Aligned_cols=126 Identities=9% Similarity=-0.054 Sum_probs=75.9
Q ss_pred HHHHHHHhcCC-HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCC-hHHHHHHHHHHHh--------cCCcch-----
Q 007461 122 LLIRYLVQSKK-WDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARK-FKIANTLLQVFIT--------DGEIAL----- 186 (603)
Q Consensus 122 ~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~--------~~~~~~----- 186 (603)
.++..+.-.++ .+.|..+++++.+.....+......++..+...++ --+|.+++.+..+ ....+.
T Consensus 253 ~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~ 332 (754)
T 4gns_B 253 SLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARL 332 (754)
T ss_dssp HHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHH
T ss_pred HHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccc
Confidence 34444444555 57899999998877522222223334444333332 2234444444332 111111
Q ss_pred -----hhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007461 187 -----LAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECK 248 (603)
Q Consensus 187 -----~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 248 (603)
...+.=...+...|+++-|+++-++.+..- +-+-.+|..|..+|...|+++.|+-.++.++
T Consensus 333 ~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 333 MNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred cCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 122233456677889999999988887753 2256789999999999999999998888875
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=91.51 E-value=1.1 Score=32.70 Aligned_cols=59 Identities=14% Similarity=0.231 Sum_probs=29.5
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHH
Q 007461 135 SIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAM 193 (603)
Q Consensus 135 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 193 (603)
++.+-++.+-..++.|++....+.+++|.+-+++..|.++|+.+...-.....+|..++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~l 86 (109)
T 1v54_E 28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVI 86 (109)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHHH
Confidence 33444444444455555555555555555555555555555555544333333344443
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=90.25 E-value=0.92 Score=43.72 Aligned_cols=96 Identities=6% Similarity=-0.012 Sum_probs=45.0
Q ss_pred HHhHHHHHHHH---HhcCCHHHHHHHHHHHHhC--C-CCCCH------H------------HHHHHHHHHHccCChHHHH
Q 007461 117 KSTLKLLIRYL---VQSKKWDSIVSLSEDFKIY--N-VLPDA------H------------TCSRLVASCVRARKFKIAN 172 (603)
Q Consensus 117 ~~~~~~l~~~~---~~~~~~~~a~~~~~~~~~~--~-~~~~~------~------------~~~~ll~~~~~~~~~~~a~ 172 (603)
...|..++... ...|+.+.|...++++... | +-++. . +...++..+...|+++++.
T Consensus 112 ~~~f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~ 191 (388)
T 2ff4_A 112 LGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVI 191 (388)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 33455544432 2357888888888777654 2 11111 0 1112222333444444444
Q ss_pred HHHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHHHHHHH
Q 007461 173 TLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKM 212 (603)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m 212 (603)
..+..+....|.+...|-.+|.++.+.|+..+|++.|+..
T Consensus 192 ~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~ 231 (388)
T 2ff4_A 192 AELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRV 231 (388)
T ss_dssp HHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4444444444444444455555555555555554444443
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=89.36 E-value=1.8 Score=41.58 Aligned_cols=70 Identities=7% Similarity=0.032 Sum_probs=40.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh-----CCCCCCHHHHH
Q 007461 508 TTVISAYNRAREFDMCVKFYNEFRMNGGVIDRAIAGIMVGVFSKLSQIEELVKLLQDMKS-----EGTKLDERLYH 578 (603)
Q Consensus 508 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~g~~~~~~~~~ 578 (603)
..++.++...|++++++..++.+..... .+...|..++.++.+.|+..+|++.|++..+ .|+.|+..+-.
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~P-~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~ 249 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEHP-YREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 249 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 3445555566666666666666655432 2555666666666666666666666665433 26666655433
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=88.80 E-value=2.5 Score=44.25 Aligned_cols=51 Identities=8% Similarity=-0.013 Sum_probs=43.1
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 007461 536 VIDRAIAGIMVGVFSKLSQIEELVKLLQDMKSEGTKLDERLYHSAMNALRDAG 588 (603)
Q Consensus 536 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~a~~~~g 588 (603)
+-...-|.+|.....|.+++++|.+.|+..+.. +.+...+..|++-|.+.+
T Consensus 610 kks~lEWEiLGlla~RL~h~~EA~~a~~~~l~~--RFs~ka~~kLLeiY~~~~ 660 (754)
T 4gns_B 610 KHSGLEWELLGLIMLRTWHWEDAVACLRTSIVA--RFDPVSCQQLLKIYLQPP 660 (754)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHSS--SCCHHHHHHHHHHHHSCC
T ss_pred ccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--ccCHHHHHHHHHHHHhcC
Confidence 345566899999999999999999999999864 678899999999998876
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=88.73 E-value=5 Score=29.29 Aligned_cols=50 Identities=12% Similarity=0.217 Sum_probs=35.0
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 007461 484 NLRQVEKLWKEMERRKVTPDKVSYTTVISAYNRAREFDMCVKFYNEFRMN 533 (603)
Q Consensus 484 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 533 (603)
+.-+..+-++.+....+-|++....+.+++|.+.+++..|+++++-++.+
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K 74 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 74 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 45556666666666667777777777777777777777777777766654
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=88.12 E-value=36 Score=38.06 Aligned_cols=53 Identities=15% Similarity=0.105 Sum_probs=30.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 007461 225 CQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDM 285 (603)
Q Consensus 225 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 285 (603)
..++..+...+..+-+.++....... ...--.+..+|...|++++|.++|++.
T Consensus 816 ~~l~~~l~~~~~~~~~~~l~~~~~~~--------~~~~yl~g~~~L~~ge~~~A~~~F~ka 868 (1139)
T 4fhn_B 816 TELVEKLFLFKQYNACMQLIGWLNSD--------PIAVYLKALIYLKSKEAVKAVRCFKTT 868 (1139)
T ss_dssp HHHHHHHHHHSCTTHHHHHHHHSCCC--------HHHHHHHHHHHHHTTCHHHHHHHHHTC
T ss_pred HHHHHHHHHhhhHHHHHHHhhhccCC--------cHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 34555566667666666654432211 122334556677777777777777654
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=87.46 E-value=2.8 Score=32.41 Aligned_cols=56 Identities=14% Similarity=0.237 Sum_probs=25.7
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHH
Q 007461 138 SLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAM 193 (603)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 193 (603)
+-++.+...++.|++......+++|.+-+|+..|.++|+-+...-.....+|..++
T Consensus 74 rglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~y~l 129 (152)
T 2y69_E 74 KGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVI 129 (152)
T ss_dssp HHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred HHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHHHHH
Confidence 33334444444555555555555555555555555555554443333333344333
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=85.28 E-value=36 Score=34.85 Aligned_cols=119 Identities=9% Similarity=0.038 Sum_probs=64.8
Q ss_pred CHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 007461 236 DSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEKGILEDPSIYASLICSFASITEVKLAEE 315 (603)
Q Consensus 236 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~ 315 (603)
+.+.|..++.................+..++..+...+...++...+....... ++.......+....+.|+++.|..
T Consensus 229 d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~a~~ 306 (618)
T 1qsa_A 229 DAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGLNT 306 (618)
T ss_dssp CHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCHHHHHH
Confidence 677777777776543322211112233444444455553445555665554432 333333444444456678888888
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 007461 316 LFKEAEEKGMLRDPEVCLKLVLMYIEEGLVEKTLDVVESMKN 357 (603)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 357 (603)
.+..+..... ....-.--+..++...|+.++|..+|..+..
T Consensus 307 ~~~~l~~~~~-~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 307 WLARLPMEAK-EKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHSCTTGG-GSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHcccccc-ccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 7776654221 1233333455566777888888887777654
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=84.76 E-value=9 Score=29.71 Aligned_cols=50 Identities=12% Similarity=0.217 Sum_probs=35.9
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 007461 484 NLRQVEKLWKEMERRKVTPDKVSYTTVISAYNRAREFDMCVKFYNEFRMN 533 (603)
Q Consensus 484 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 533 (603)
|.-+..+-++.+....+-|+.....+.+++|.+.+|+..|+++|+-++.+
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K 117 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 117 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 34455666666666677777777777788888888888888887777654
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=83.63 E-value=4.3 Score=36.07 Aligned_cols=115 Identities=11% Similarity=0.018 Sum_probs=67.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCc---chhhHHHHHhhhhhcCc
Q 007461 125 RYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEI---ALLAFNSAMGGYNKLHM 201 (603)
Q Consensus 125 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~ 201 (603)
..+.+.|++++++.....-++.. +.|...-..++..++-.|++++|.+-++.+.+..+. ....|-.+|.+-..
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~aE~~--- 80 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQA--- 80 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHH---
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHHH---
Confidence 34566778888888877777765 667777777888888888888888877777776552 23344444443211
Q ss_pred HHHHHHHHHHHHhCCCCC-----ChhhHHHHHHHHH--HcCCHHHHHHHHHHHHhC
Q 007461 202 YYSTILVYEKMKSAGIVL-----DSGCYCQIMEAYY--KIGDSEKVAALFLECKSR 250 (603)
Q Consensus 202 ~~~a~~~~~~m~~~~~~p-----~~~~~~~ll~~~~--~~g~~~~a~~~~~~~~~~ 250 (603)
=.++...+-.| ...-...++.+.. ..|+.++|.++-....+.
T Consensus 81 -------R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ 129 (273)
T 1zbp_A 81 -------RKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 129 (273)
T ss_dssp -------HHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred -------HHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc
Confidence 11111111111 1223334444443 347888777777666443
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=83.20 E-value=13 Score=41.50 Aligned_cols=84 Identities=13% Similarity=0.053 Sum_probs=50.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 007461 507 YTTVISAYNRAREFDMCVKFYNEFRMNGGVIDR----AIAGIMVGVFSKLSQIEELVKLLQDMKSEGTKLDERLYHSAMN 582 (603)
Q Consensus 507 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~ 582 (603)
|..++..+.+.|.++.+.++-+.+++....-+. ..|..+.+.....|++++|...+-.+.....+ ...+..|+.
T Consensus 902 Y~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r--~~cLr~LV~ 979 (1139)
T 4fhn_B 902 YLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK--KSCLLDFVN 979 (1139)
T ss_dssp HHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC--HHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH--HHHHHHHHH
Confidence 556666666777777777776666554322122 14666677777777777777777666654332 455666666
Q ss_pred HHHhcCcHHH
Q 007461 583 ALRDAGLQMQ 592 (603)
Q Consensus 583 a~~~~g~~~~ 592 (603)
.++..|..+.
T Consensus 980 ~lce~~~~~~ 989 (1139)
T 4fhn_B 980 QLTKQGKINQ 989 (1139)
T ss_dssp HHHHHCCHHH
T ss_pred HHHhCCChhh
Confidence 6665555443
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=82.72 E-value=10 Score=30.79 Aligned_cols=129 Identities=12% Similarity=0.054 Sum_probs=65.8
Q ss_pred CCCCCHHh--HHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCH-------HHHHHHHHHHHccCChHHHHHHHHHHHhc
Q 007461 112 EFRPEKST--LKLLIRYLVQSKKWDSIVSLSEDFKIYN-VLPDA-------HTCSRLVASCVRARKFKIANTLLQVFITD 181 (603)
Q Consensus 112 ~~~p~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~-------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 181 (603)
|+.|.... +-.-++.+...|.++.|+-+.+.+.... ..|+. .++..+.+++...+++.+|...|++..+.
T Consensus 13 ~~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~ 92 (167)
T 3ffl_A 13 GLVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQ 92 (167)
T ss_dssp --------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 45555444 3345677888888998888888765442 12331 25556667778888888888888886543
Q ss_pred CC---cchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC
Q 007461 182 GE---IALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLD 253 (603)
Q Consensus 182 ~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 253 (603)
.. .+..+...+. . ...... ......+...--.+..+|.+.+++++|+.+++.++.+...
T Consensus 93 ~k~l~k~~s~~~~~~-~---~ss~p~---------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~Rt 154 (167)
T 3ffl_A 93 KKALSKTSKVRPSTG-N---SASTPQ---------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSRQRT 154 (167)
T ss_dssp HHCC---------------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGGCC
T ss_pred HHHHhcCCCcccccc-c---cCCCcc---------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCchhcC
Confidence 21 1111110010 0 000000 0011223344445677778888888888888776554433
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=82.13 E-value=30 Score=31.65 Aligned_cols=166 Identities=9% Similarity=-0.007 Sum_probs=90.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHH----HHHHHHHcCCCCCHHHHHHHHH
Q 007461 332 CLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRRGYWAAVK----VYEQLISQGCIPGQVTYASIIN 407 (603)
Q Consensus 332 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~----~~~~m~~~g~~p~~~~~~~ll~ 407 (603)
|.++..-|.+.+++++|.+++..-. ..+.+.|+...|.+ +.+...+.+.+++......++.
T Consensus 36 ~Rtl~~Ry~~~~~~~eAidlL~~ga---------------~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~ 100 (312)
T 2wpv_A 36 LRTIANRYVRSKSYEHAIELISQGA---------------LSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVR 100 (312)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH---------------HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHH---------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 3345555677777777776654321 22344455443333 4455556677777777777776
Q ss_pred HHHhcCChH-HHHHHHHHHHH----cC--CCcCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHH
Q 007461 408 AYCRIALYS-KAEKVFIEMQQ----KG--FDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHG 480 (603)
Q Consensus 408 ~~~~~g~~~-~a~~~~~~~~~----~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 480 (603)
.+.....-+ .=.++.+++.+ .| ..-++.....+...|.+.|++.+|...|-.-. .-|...+..++.-+.
T Consensus 101 l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~----~~s~~~~a~~l~~w~ 176 (312)
T 2wpv_A 101 LIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGT----HDSMIKYVDLLWDWL 176 (312)
T ss_dssp HHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSC----HHHHHHHHHHHHHHH
T ss_pred HHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCC----CccHHHHHHHHHHHH
Confidence 665533211 12334444432 22 12367788889999999999999887764111 113445554444444
Q ss_pred hc---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007461 481 RA---KNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNRAREFDMCVKFYNEFR 531 (603)
Q Consensus 481 ~~---g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 531 (603)
.. |...++--+ .-..++ -|.-.|+...|..+++...
T Consensus 177 ~~~~~~~~~e~dlf--------------~~RaVL-~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 177 CQVDDIEDSTVAEF--------------FSRLVF-NYLFISNISFAHESKDIFL 215 (312)
T ss_dssp HHTTCCCHHHHHHH--------------HHHHHH-HHHHTTBHHHHHHHHHHHH
T ss_pred HhcCCCCcchHHHH--------------HHHHHH-HHHHhcCHHHHHHHHHHHH
Confidence 33 433332211 112222 2445678888888887664
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=81.40 E-value=63 Score=34.78 Aligned_cols=313 Identities=7% Similarity=-0.038 Sum_probs=162.7
Q ss_pred HHHhccCCHHHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHccCCHHHHHHHHHHHHHcCC--C-----CCHHHHHHHHH
Q 007461 267 DSLGKSGRAFEALKFFRDMKEKGILEDPSI--YASLICSFASITEVKLAEELFKEAEEKGM--L-----RDPEVCLKLVL 337 (603)
Q Consensus 267 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~--~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--~-----~~~~~~~~l~~ 337 (603)
-+....|+.++++.+++.....+-..+..+ -..+.-+....|...++..++...+...- . +....-..+.-
T Consensus 382 LGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGL 461 (963)
T 4ady_A 382 LGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGI 461 (963)
T ss_dssp HHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHH
T ss_pred hhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHH
Confidence 345667788888877766554211123222 22333344556665667777777665421 0 11222223333
Q ss_pred HHHHcCC-HHHHHHHHHHHHhCCCCCCHhhHH--HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH--HHHhc
Q 007461 338 MYIEEGL-VEKTLDVVESMKNAKLKISDCISC--AIVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIIN--AYCRI 412 (603)
Q Consensus 338 ~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~--~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~--~~~~~ 412 (603)
+++-.|. -+++.+.+..+...+-. ...... +|...+.-.|+.+....++..+.+. .+......+.- ++...
T Consensus 462 Gla~~GS~~eev~e~L~~~L~dd~~-~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~---~~e~vrR~aalgLGll~~ 537 (963)
T 4ady_A 462 GLAAMGSANIEVYEALKEVLYNDSA-TSGEAAALGMGLCMLGTGKPEAIHDMFTYSQET---QHGNITRGLAVGLALINY 537 (963)
T ss_dssp HHHSTTCCCHHHHHHHHHHHHTCCH-HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHC---SCHHHHHHHHHHHHHHTT
T ss_pred HHHhcCCCCHHHHHHHHHHHhcCCH-HHHHHHHHHHhhhhcccCCHHHHHHHHHHHhcc---CcHHHHHHHHHHHHhhhC
Confidence 3333343 23555555555543221 111122 2333344667777777777776653 23333333333 34477
Q ss_pred CChHHHHHHHHHHHHcCCCcCHhhHH--HHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHH
Q 007461 413 ALYSKAEKVFIEMQQKGFDKCVVAYS--SMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEK 490 (603)
Q Consensus 413 g~~~~a~~~~~~~~~~~~~~~~~~~~--~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 490 (603)
|+.+.+..+.+.+.... .|....-. ++.-+|+..|+.....++++.+.+. ...++.-...+.-++...|+.+.+.+
T Consensus 538 g~~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d-~~d~VRraAViaLGlI~~g~~e~v~r 615 (963)
T 4ady_A 538 GRQELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD-SNDDVRRAAVIALGFVLLRDYTTVPR 615 (963)
T ss_dssp TCGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTSSSCSSHHH
T ss_pred CChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC-CcHHHHHHHHHHHHhhccCCHHHHHH
Confidence 89999999988887652 33332222 3344567788988888899988875 22334333333334555677777777
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHCCCCCCHHHHHHHHHHH--HccC-------CHHHHHH
Q 007461 491 LWKEMERRKVTPDKVSYTTVISAYNRAREF-DMCVKFYNEFRMNGGVIDRAIAGIMVGVF--SKLS-------QIEELVK 560 (603)
Q Consensus 491 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~g-------~~~~A~~ 560 (603)
++..+.+.+ .|....-..+.-+....|.. .++++++..+... +|..+-..-+.++ .-.| +....++
T Consensus 616 lv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~D---~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~ 691 (963)
T 4ady_A 616 IVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTKD---PVDFVRQAAMIALSMILIQQTEKLNPQVADINK 691 (963)
T ss_dssp HTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHTC---SSHHHHHHHHHHHHHHSTTCCTTTCTTHHHHHH
T ss_pred HHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHccC---CCHHHHHHHHHHHHHHhcCCccccchHHHHHHH
Confidence 777666543 44444334444444445543 6788888888752 3444332222222 2223 3444444
Q ss_pred HHHHHHhC-CCCCCHHHHHHHHHHHHhcCc
Q 007461 561 LLQDMKSE-GTKLDERLYHSAMNALRDAGL 589 (603)
Q Consensus 561 ~~~~m~~~-g~~~~~~~~~~ll~a~~~~g~ 589 (603)
.+...... .-.++...-..+..+..+.|.
T Consensus 692 ~L~~~~~dk~~d~~~~fga~iAqGll~aG~ 721 (963)
T 4ady_A 692 NFLSVITNKHQEGLAKFGACVAQGIMNAGG 721 (963)
T ss_dssp HHHHHHHCSSSCHHHHHHHHHHHHHHTTGG
T ss_pred HHHHHHhcccccHHHHHHHHHHHHHHhcCC
Confidence 44444332 223334444455556665553
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 603 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.93 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.92 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.58 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.58 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.25 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.17 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.16 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.16 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.15 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.13 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.99 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.97 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.95 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.95 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.5 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.49 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.48 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.45 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.45 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.38 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.37 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.36 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.35 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.31 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.31 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.31 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.29 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.17 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.1 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.09 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.0 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 97.97 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.92 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 97.81 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.78 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.77 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.75 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.72 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.71 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.71 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.71 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.69 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.68 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.67 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.63 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.59 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.57 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.55 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.42 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.15 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 96.85 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 96.83 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 96.75 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 96.28 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 96.02 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 95.72 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 95.7 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 94.99 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 93.8 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 91.17 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 90.88 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 89.56 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 88.99 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 84.78 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.93 E-value=2.7e-21 Score=189.42 Aligned_cols=218 Identities=12% Similarity=0.101 Sum_probs=91.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 007461 329 PEVCLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINA 408 (603)
Q Consensus 329 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 408 (603)
...+..+...+...|++++|...++...+.++. +..+|..+...+...|++++|+..+++....+ +.+...+..+...
T Consensus 169 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 246 (388)
T d1w3ba_ 169 AVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACV 246 (388)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHhhcccccccCcHHHHHHHHHHHHHhCcc-cHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhHHHHHHHHHHH
Confidence 333444444444444444444444444333321 22233334444444444444444444433332 1223333334444
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHH
Q 007461 409 YCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQV 488 (603)
Q Consensus 409 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a 488 (603)
+.+.|++++|...|++..+.. +.+...+..+...+.+.|++++|.+.++..... .+.+...+..+...+...|++++|
T Consensus 247 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A 324 (388)
T d1w3ba_ 247 YYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRL-CPTHADSLNNLANIKREQGNIEEA 324 (388)
T ss_dssp HHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTTTCHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhcc-CCccchhhhHHHHHHHHCCCHHHH
Confidence 444444444444444444432 223344444444444444444444444444433 123334444444444444444444
Q ss_pred HHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 007461 489 EKLWKEMERRKVTPD-KVSYTTVISAYNRAREFDMCVKFYNEFRMNGGVIDRAIAGIMVGVFSKLS 553 (603)
Q Consensus 489 ~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 553 (603)
++.+++.++. .|+ ..++..+..+|...|++++|.+.|+++++..+. +...|..+..+|.+.|
T Consensus 325 ~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~lg~~~~~~~ 387 (388)
T d1w3ba_ 325 VRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HHHHHHHTTS--CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcC
Confidence 4444444422 222 233444444444444444444444444443211 2334444444444433
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.92 E-value=9e-21 Score=185.69 Aligned_cols=383 Identities=14% Similarity=0.094 Sum_probs=305.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcH
Q 007461 123 LIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMY 202 (603)
Q Consensus 123 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 202 (603)
+...+.+.|++++|++.++++.+.. +-+..++..+...|.+.|++++|...++++.+..|.+..+|..+...|.+.|++
T Consensus 5 la~~~~~~G~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~~ 83 (388)
T d1w3ba_ 5 LAHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhccc
Confidence 4566778899999999999888775 456778888888888999999999999999888888888999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccCCHHHHHHHH
Q 007461 203 YSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFF 282 (603)
Q Consensus 203 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 282 (603)
++|+..+....+.... +..............+....+.............. ..............+....+...+
T Consensus 84 ~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 158 (388)
T d1w3ba_ 84 QEAIEHYRHALRLKPD-FIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDL----YCVRSDLGNLLKALGRLEEAKACY 158 (388)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTC----THHHHHHHHHHHTTSCHHHHHHHH
T ss_pred cccccccccccccccc-ccccccccccccccccccccccccccccccccccc----ccccccccccccccchhhhhHHHH
Confidence 9999999888876433 44455555555556666666665555554443332 235666777778888888888888
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC
Q 007461 283 RDMKEKGILEDPSIYASLICSFASITEVKLAEELFKEAEEKGMLRDPEVCLKLVLMYIEEGLVEKTLDVVESMKNAKLKI 362 (603)
Q Consensus 283 ~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 362 (603)
....... +-+...+..+...+...|+.+.|...++...+.. +.+...+..+...+...|++++|...+......+. .
T Consensus 159 ~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~ 235 (388)
T d1w3ba_ 159 LKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP-N 235 (388)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCT-T
T ss_pred HHhhccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhh-h
Confidence 8777652 2255677777888888999999999999888765 33677888899999999999999999999887765 3
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHH
Q 007461 363 SDCISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVA 442 (603)
Q Consensus 363 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 442 (603)
+...+..+...+.+.|++++|+..|++..+.. +-+..++..+...+...|++++|.+.++...... +.+...+..+..
T Consensus 236 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 313 (388)
T d1w3ba_ 236 HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLAN 313 (388)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccC-CccchhhhHHHH
Confidence 55678888889999999999999999988764 3456788888899999999999999999988775 677888899999
Q ss_pred HHHccCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCC
Q 007461 443 MYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPD-KVSYTTVISAYNRARE 519 (603)
Q Consensus 443 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~ 519 (603)
.+.+.|++++|++.|++..+.. +-+..++..+..+|...|++++|...|++.++. .|+ ...|..+..+|.+.||
T Consensus 314 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 314 IKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCC
Confidence 9999999999999999988752 335677888999999999999999999999854 554 5678888888887775
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.58 E-value=1.6e-12 Score=122.83 Aligned_cols=271 Identities=9% Similarity=-0.031 Sum_probs=154.9
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCC
Q 007461 300 LICSFASITEVKLAEELFKEAEEKGMLRDPEVCLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRRG 379 (603)
Q Consensus 300 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 379 (603)
....+.+.|++++|...|+.+++.. +.+...+..+...|...|++++|...|.+..+.++. +...|..+...+...|+
T Consensus 25 ~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~ 102 (323)
T d1fcha_ 25 EGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPD-NQTALMALAVSFTNESL 102 (323)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccc-ccccccccccccccccc
Confidence 3445566777777777777776654 225666666777777777777777777776665542 44556666666677777
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCCHHHHHHHHHH
Q 007461 380 YWAAVKVYEQLISQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAK 459 (603)
Q Consensus 380 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 459 (603)
+++|++.+++..... |+............. ..+.......+..+.+.+.+.+|.+.+.+
T Consensus 103 ~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 161 (323)
T d1fcha_ 103 QRQACEILRDWLRYT--PAYAHLVTPAEEGAG-------------------GAGLGPSKRILGSLLSDSLFLEVKELFLA 161 (323)
T ss_dssp HHHHHHHHHHHHHTS--TTTGGGCC----------------------------------CTTHHHHHHHHHHHHHHHHHH
T ss_pred ccccccchhhHHHhc--cchHHHHHhhhhhhh-------------------hcccccchhhHHHHHHhhHHHHHHHHHHH
Confidence 777777766665532 221110000000000 00000011111222334455666666666
Q ss_pred HHHcC-CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 007461 460 MKAKG-CEPNVWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNRAREFDMCVKFYNEFRMNGGVID 538 (603)
Q Consensus 460 m~~~~-~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 538 (603)
..+.. -.++..++..+...+...|++++|+..+++..... +-+...|..+..+|...|++++|++.|+++.+.... +
T Consensus 162 al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~ 239 (323)
T d1fcha_ 162 AVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPG-Y 239 (323)
T ss_dssp HHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-C
T ss_pred HHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccc-cccccchhhhhhcccccccchhHHHHHHHHHHHhhc-c
Confidence 65431 12345566667777777777777777777776542 123456777777777777777777777777765322 4
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHhC----------CCCCCHHHHHHHHHHHHhcCcHHHHHH
Q 007461 539 RAIAGIMVGVFSKLSQIEELVKLLQDMKSE----------GTKLDERLYHSAMNALRDAGLQMQAQW 595 (603)
Q Consensus 539 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----------g~~~~~~~~~~ll~a~~~~g~~~~a~~ 595 (603)
...|..++.+|.+.|++++|++.|++.++. ........|..+-.++...|+.+.+..
T Consensus 240 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~~ 306 (323)
T d1fcha_ 240 IRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGA 306 (323)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 556777777777777777777777776652 112223345555566666666554443
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.58 E-value=1.3e-12 Score=123.49 Aligned_cols=228 Identities=13% Similarity=-0.017 Sum_probs=122.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcH
Q 007461 123 LIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMY 202 (603)
Q Consensus 123 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 202 (603)
....+.+.|++++|+..|+.+.+.. +.+..+|..+..++...|++++|...+++..+..|.+...|..+...|...|++
T Consensus 25 ~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~ 103 (323)
T d1fcha_ 25 EGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQ 103 (323)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccccccccccccccccccccc
Confidence 3444555566666666666655554 334555555555566666666666666665555555555566666666666666
Q ss_pred HHHHHHHHHHHhCCCCCChh----------------hHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHH
Q 007461 203 YSTILVYEKMKSAGIVLDSG----------------CYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILC 266 (603)
Q Consensus 203 ~~a~~~~~~m~~~~~~p~~~----------------~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li 266 (603)
++|.+.++...... |+.. .....+..+...+..++|.+.|.+....++.. .+..++..+.
T Consensus 104 ~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~--~~~~~~~~l~ 179 (323)
T d1fcha_ 104 RQACEILRDWLRYT--PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTS--IDPDVQCGLG 179 (323)
T ss_dssp HHHHHHHHHHHHTS--TTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTS--CCHHHHHHHH
T ss_pred cccccchhhHHHhc--cchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcc--cccccchhhH
Confidence 66666665555432 1110 01111222333445555666665554443322 1234555666
Q ss_pred HHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHH
Q 007461 267 DSLGKSGRAFEALKFFRDMKEKGILEDPSIYASLICSFASITEVKLAEELFKEAEEKGMLRDPEVCLKLVLMYIEEGLVE 346 (603)
Q Consensus 267 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 346 (603)
..+...|++++|+..|++..... +-+...|..+...+...|++++|.+.++.+.+.. +-+..++..+...|.+.|+++
T Consensus 180 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~ 257 (323)
T d1fcha_ 180 VLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHR 257 (323)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHhhhhcccccccccc-cccccchhhhhhcccccccchhHHHHHHHHHHHh-hccHHHHHHHHHHHHHCCCHH
Confidence 66666666666666666655442 1134455555566666666666666666665543 224555556666666666666
Q ss_pred HHHHHHHHHHh
Q 007461 347 KTLDVVESMKN 357 (603)
Q Consensus 347 ~a~~~~~~~~~ 357 (603)
+|.+.|++..+
T Consensus 258 ~A~~~~~~al~ 268 (323)
T d1fcha_ 258 EAVEHFLEALN 268 (323)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66666665443
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.25 E-value=1.4e-09 Score=101.22 Aligned_cols=164 Identities=8% Similarity=0.047 Sum_probs=91.6
Q ss_pred hhHHHHHHhcCCCChHHHHHHHHHHhhCCCCCCCHHhHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 007461 83 FDSFLHGMLKDPQTQELAYDYYNEAKKLPEFRPEKSTLKLLIRYLVQSK-KWDSIVSLSEDFKIYNVLPDAHTCSRLVAS 161 (603)
Q Consensus 83 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 161 (603)
++.+-..+.+.+...+ |++.++.+++.. +-+...|+.....+...| ++++|+..++...+.+ +-+..+|..+...
T Consensus 46 ~~~~~~~~~~~e~~~~-Al~~~~~ai~ln--P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~~~ 121 (315)
T d2h6fa1 46 YDYFRAVLQRDERSER-AFKLTRDAIELN--AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVL 121 (315)
T ss_dssp HHHHHHHHHHTCCCHH-HHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHhCCchHH-HHHHHHHHHHHC--CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHHHhHH
Confidence 3333333444444444 666666666542 334445666666655554 3666666666666554 4455666666666
Q ss_pred HHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCC-----
Q 007461 162 CVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGD----- 236 (603)
Q Consensus 162 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~----- 236 (603)
+.+.|++++|+..++++.+..|.+..+|..+...+...|++++|++.++++++.++. +...|+.+...+.+.+.
T Consensus 122 ~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~-n~~a~~~r~~~l~~~~~~~~~~ 200 (315)
T d2h6fa1 122 VEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYNDRA 200 (315)
T ss_dssp HHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCSHH
T ss_pred HHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCc-cHHHHHHHHHHHHHccccchhh
Confidence 666666666666666666666666666666666666666666666666666664332 44455555444444433
Q ss_pred -HHHHHHHHHHHHhCC
Q 007461 237 -SEKVAALFLECKSRK 251 (603)
Q Consensus 237 -~~~a~~~~~~~~~~~ 251 (603)
+++|.+.+......+
T Consensus 201 ~~~~ai~~~~~al~~~ 216 (315)
T d2h6fa1 201 VLEREVQYTLEMIKLV 216 (315)
T ss_dssp HHHHHHHHHHHHHHHS
T ss_pred hhHHhHHHHHHHHHhC
Confidence 344444444444443
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.17 E-value=9.1e-09 Score=95.51 Aligned_cols=185 Identities=10% Similarity=0.031 Sum_probs=107.2
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 007461 310 VKLAEELFKEAEEKGMLRDPEVCLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQ 389 (603)
Q Consensus 310 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 389 (603)
.+.+..+++..++...+.+...+...+..+.+.|+++.|..+|+.+.+..+.....+|...+..+.+.|+.+.|.++|++
T Consensus 80 ~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~ 159 (308)
T d2onda1 80 SDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKK 159 (308)
T ss_dssp HHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 45666666666655444456666666667777777777777777766655443444566666666666667777777766
Q ss_pred HHHcCCCCCHHHHHHHHH-HHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcC-CCC
Q 007461 390 LISQGCIPGQVTYASIIN-AYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKG-CEP 467 (603)
Q Consensus 390 m~~~g~~p~~~~~~~ll~-~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p 467 (603)
+.+.+.. +...|..... -+...|+.+.|..+|+.+.+.. +.+...|...++.+.+.|+++.|..+|++..... ..|
T Consensus 160 al~~~~~-~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~-p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~ 237 (308)
T d2onda1 160 AREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPP 237 (308)
T ss_dssp HHTSTTC-CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCG
T ss_pred HHHhCCC-cHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh
Confidence 6654421 2222222222 1233456666666666666542 4445566666666666666666666666655541 222
Q ss_pred C--HhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007461 468 N--VWIYNSLMDMHGRAKNLRQVEKLWKEME 496 (603)
Q Consensus 468 ~--~~~~~~li~~~~~~g~~~~a~~~~~~m~ 496 (603)
+ ...|...+..-...|+.+.+.++++++.
T Consensus 238 ~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~ 268 (308)
T d2onda1 238 EKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp GGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 2 2355555555555666666666666554
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.16 E-value=3e-09 Score=98.87 Aligned_cols=233 Identities=7% Similarity=0.012 Sum_probs=184.3
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC-ChHHHHHHHHHHHhcCCcchhhHHHHHhh
Q 007461 117 KSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRAR-KFKIANTLLQVFITDGEIALLAFNSAMGG 195 (603)
Q Consensus 117 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 195 (603)
...++.+...+.+.+.+++|+.+++++++.+ |-+..+|+....++...| ++++|+..++.+....|.+..+|+.+...
T Consensus 43 ~~a~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~ 121 (315)
T d2h6fa1 43 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVL 121 (315)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHH
Confidence 4456667777888899999999999999987 667788999988888876 58999999999999999999999999999
Q ss_pred hhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccCC-
Q 007461 196 YNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGR- 274 (603)
Q Consensus 196 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~- 274 (603)
+.+.|++++|++.++++.+.... +...|..+...+.+.|++++|.+.|+.+.+.++. +..+|+.+...+.+.+.
T Consensus 122 ~~~l~~~~eAl~~~~kal~~dp~-n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~----n~~a~~~r~~~l~~~~~~ 196 (315)
T d2h6fa1 122 VEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR----NNSVWNQRYFVISNTTGY 196 (315)
T ss_dssp HHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCS
T ss_pred HHhhccHHHHHHHHhhhhhhhhc-chHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCc----cHHHHHHHHHHHHHcccc
Confidence 99999999999999999987544 7889999999999999999999999999987654 35688888777666555
Q ss_pred -----HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHc--CC--
Q 007461 275 -----AFEALKFFRDMKEKGILEDPSIYASLICSFASITEVKLAEELFKEAEEKGML-RDPEVCLKLVLMYIEE--GL-- 344 (603)
Q Consensus 275 -----~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~--g~-- 344 (603)
+++|++.+...++.. +.+...|..+...+.. ...+++.+.++...+.... .+...+..++..|... +.
T Consensus 197 ~~~~~~~~ai~~~~~al~~~-P~~~~~~~~l~~ll~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~~~~~~~~ 274 (315)
T d2h6fa1 197 NDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQD-RGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCD 274 (315)
T ss_dssp CSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTT-TCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCS
T ss_pred chhhhhHHhHHHHHHHHHhC-CCchHHHHHHHHHHHh-cChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHhcCHH
Confidence 678999999888763 2256677766665544 4467777888877765433 3566777777777553 33
Q ss_pred -----HHHHHHHHHHHHh
Q 007461 345 -----VEKTLDVVESMKN 357 (603)
Q Consensus 345 -----~~~a~~~~~~~~~ 357 (603)
+++|.+++..+.+
T Consensus 275 ~~~~~~~ka~~l~~~l~~ 292 (315)
T d2h6fa1 275 NKEDILNKALELCEILAK 292 (315)
T ss_dssp SHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 4555556555443
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.16 E-value=4.4e-08 Score=92.75 Aligned_cols=192 Identities=8% Similarity=-0.010 Sum_probs=106.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcC----CCcCHhhHHHHHHHHHccCCHHHHHHHHHHHHHc--CCCC----CHhH
Q 007461 402 YASIINAYCRIALYSKAEKVFIEMQQKG----FDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAK--GCEP----NVWI 471 (603)
Q Consensus 402 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~p----~~~~ 471 (603)
+..+...+...|+++.+...+....... .......+..+...+...++..++...+.+.... .... ....
T Consensus 136 ~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~ 215 (366)
T d1hz4a_ 136 VRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNA 215 (366)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHH
T ss_pred HHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHH
Confidence 3444555666677777776666655431 1222334445555566667777766666554432 0111 1223
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCCH-HHHH
Q 007461 472 YNSLMDMHGRAKNLRQVEKLWKEMERRKVTPD---KVSYTTVISAYNRAREFDMCVKFYNEFRMN----GGVIDR-AIAG 543 (603)
Q Consensus 472 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~~~~-~~~~ 543 (603)
+..+...+...|++++|...+++........+ ...+..+..++...|++++|...++++... +..|+. ..+.
T Consensus 216 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 295 (366)
T d1hz4a_ 216 NKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLL 295 (366)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHH
Confidence 44455566677777777777776654322222 233455666777777777777777766532 222322 3566
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhC----CCC----CCHHHHHHHHHHHHhcCcHHHH
Q 007461 544 IMVGVFSKLSQIEELVKLLQDMKSE----GTK----LDERLYHSAMNALRDAGLQMQA 593 (603)
Q Consensus 544 ~l~~~~~~~g~~~~A~~~~~~m~~~----g~~----~~~~~~~~ll~a~~~~g~~~~a 593 (603)
.+..+|.+.|++++|.+.+++..+. |.. .....+..++..+...|..+++
T Consensus 296 ~la~~~~~~g~~~~A~~~l~~Al~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~e~ 353 (366)
T d1hz4a_ 296 LLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPEL 353 (366)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHHCCCHHHHTTHHHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHHHHHhcCCChHH
Confidence 6777777778877777777766542 321 1223445555566666655444
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.15 E-value=6.7e-08 Score=91.45 Aligned_cols=271 Identities=13% Similarity=-0.020 Sum_probs=124.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHccCChHHHHHHHHHHHhcCC------cchhhHH
Q 007461 121 KLLIRYLVQSKKWDSIVSLSEDFKIYNVLPD----AHTCSRLVASCVRARKFKIANTLLQVFITDGE------IALLAFN 190 (603)
Q Consensus 121 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~------~~~~~~~ 190 (603)
......+...|++++|++++++..+.....+ ..++..+...+...|++++|...+++.....+ ....++.
T Consensus 16 ~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 95 (366)
T d1hz4a_ 16 ALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI 95 (366)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHH
Confidence 3344555666666676666666655431111 12444455555566666666666655543211 0122233
Q ss_pred HHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHh----CCCCCCCccHHHHHHHH
Q 007461 191 SAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKS----RKLDSTPFSTHMYKILC 266 (603)
Q Consensus 191 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~~~~~~~~li 266 (603)
. +...+...|++..+...+..... ............+..+.
T Consensus 96 ~-----------------------------------~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la 140 (366)
T d1hz4a_ 96 Q-----------------------------------QSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRA 140 (366)
T ss_dssp H-----------------------------------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHH
T ss_pred H-----------------------------------HHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHH
Confidence 3 33444444555544444443321 11111111122334444
Q ss_pred HHHhccCCHHHHHHHHHHHHHCC----CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcC--CCC----CHHHHHHHH
Q 007461 267 DSLGKSGRAFEALKFFRDMKEKG----ILEDPSIYASLICSFASITEVKLAEELFKEAEEKG--MLR----DPEVCLKLV 336 (603)
Q Consensus 267 ~~~~~~g~~~~A~~~~~~m~~~g----~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--~~~----~~~~~~~l~ 336 (603)
..+...|+++.+...+....... .......+......+...++...+...+....... ... ....+..+.
T Consensus 141 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 220 (366)
T d1hz4a_ 141 QLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRV 220 (366)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHH
T ss_pred HHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHH
Confidence 45555555555555555444321 11112233333344444555555555554443321 011 112333444
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCC---HhhHHHHHHHHHhcCCHHHHHHHHHHHHH----cCCCCC-HHHHHHHHHH
Q 007461 337 LMYIEEGLVEKTLDVVESMKNAKLKIS---DCISCAIVNGFSKRRGYWAAVKVYEQLIS----QGCIPG-QVTYASIINA 408 (603)
Q Consensus 337 ~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~----~g~~p~-~~~~~~ll~~ 408 (603)
..+...|++++|...+..........+ ...+..+...+...|++++|...+++... .+..|+ ..++..+...
T Consensus 221 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 300 (366)
T d1hz4a_ 221 IYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQL 300 (366)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHH
Confidence 555566666666666655443322211 22234455556666666666666655442 122222 2344555556
Q ss_pred HHhcCChHHHHHHHHHHH
Q 007461 409 YCRIALYSKAEKVFIEMQ 426 (603)
Q Consensus 409 ~~~~g~~~~a~~~~~~~~ 426 (603)
+...|++++|.+.+++..
T Consensus 301 ~~~~g~~~~A~~~l~~Al 318 (366)
T d1hz4a_ 301 YWQAGRKSDAQRVLLDAL 318 (366)
T ss_dssp HHHHTCHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHH
Confidence 666666666666666543
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.13 E-value=1.7e-08 Score=93.62 Aligned_cols=187 Identities=13% Similarity=0.032 Sum_probs=122.1
Q ss_pred cHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccCCHHHHHH
Q 007461 201 MYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALK 280 (603)
Q Consensus 201 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 280 (603)
..++|..+|++.++...+.+...|...+..+.+.|+++.|..+|+.+....+.. ...+|...+..+.+.|+.++|.+
T Consensus 79 ~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~---~~~~w~~~~~~~~~~~~~~~ar~ 155 (308)
T d2onda1 79 FSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDID---PTLVYIQYMKFARRAEGIKSGRM 155 (308)
T ss_dssp HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSC---THHHHHHHHHHHHHHHCHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCC---hHHHHHHHHHHHHHcCChHHHHH
Confidence 456777777777765444455567777777778888888888888776644332 12457777777778888888888
Q ss_pred HHHHHHHCCCCCCHHHHHHHHH-HHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 007461 281 FFRDMKEKGILEDPSIYASLIC-SFASITEVKLAEELFKEAEEKGMLRDPEVCLKLVLMYIEEGLVEKTLDVVESMKNAK 359 (603)
Q Consensus 281 ~~~~m~~~g~~p~~~~~~~ll~-~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 359 (603)
+|++..+.+.. +...|..... -+...|+.+.|..+++.+.+.. +.+...+...++.+.+.|+++.|+.+|++.....
T Consensus 156 i~~~al~~~~~-~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~-p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~ 233 (308)
T d2onda1 156 IFKKAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG 233 (308)
T ss_dssp HHHHHHTSTTC-CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSS
T ss_pred HHHHHHHhCCC-cHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Confidence 88887765322 2333333322 2334577788888888777753 3457777777777778888888888888776654
Q ss_pred C-CCC--HhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007461 360 L-KIS--DCISCAIVNGFSKRRGYWAAVKVYEQLIS 392 (603)
Q Consensus 360 ~-~~~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 392 (603)
. .|. ...|...+.--...|+.+.+..+++++.+
T Consensus 234 ~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~ 269 (308)
T d2onda1 234 SLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp SSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3 222 23566666655666777777776666544
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.99 E-value=2e-08 Score=90.52 Aligned_cols=150 Identities=7% Similarity=-0.201 Sum_probs=110.2
Q ss_pred HHHHHHHHhhCCCCCC--CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHH
Q 007461 100 AYDYYNEAKKLPEFRP--EKSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQV 177 (603)
Q Consensus 100 a~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 177 (603)
++.-++++.......+ ...+|..+...|.+.|++++|+..|++..+.. +.+..+|..+..++.+.|++++|+..|++
T Consensus 18 al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 96 (259)
T d1xnfa_ 18 ILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDS 96 (259)
T ss_dssp HHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhhhhH
Confidence 5556666665433322 23467777888888999999999999988876 56788888888889999999999999999
Q ss_pred HHhcCCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 007461 178 FITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRK 251 (603)
Q Consensus 178 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 251 (603)
+....|.+..+|..+...|...|++++|++.|+...+.... +......+...+.+.+..+.+..+........
T Consensus 97 al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (259)
T d1xnfa_ 97 VLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPN-DPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSD 169 (259)
T ss_dssp HHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSC
T ss_pred HHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhccc-cHHHHHHHHHHHHHhhhHHHHHHHHHHhhccc
Confidence 98888888888888888888999999999999888875432 44444444455556666665555555555443
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.97 E-value=2.9e-09 Score=100.34 Aligned_cols=59 Identities=10% Similarity=0.019 Sum_probs=25.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 007461 369 AIVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQK 428 (603)
Q Consensus 369 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 428 (603)
.+...+...++.++|+..+.+..... +-+..++..+...+...|+.++|.+.++...+.
T Consensus 247 ~l~~~~~~~~~~~~a~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~l 305 (334)
T d1dcea1 247 LSVEKSTVLQSELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 305 (334)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhhC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 33344444444444444444443322 112233344444444455555555555554443
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.95 E-value=2.9e-09 Score=100.33 Aligned_cols=215 Identities=7% Similarity=-0.080 Sum_probs=113.5
Q ss_pred ChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCc--HHHHHHHHHHHHhCCCCCChhhHH-HHHHHHHHcCCHHHHHHH
Q 007461 167 KFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHM--YYSTILVYEKMKSAGIVLDSGCYC-QIMEAYYKIGDSEKVAAL 243 (603)
Q Consensus 167 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~m~~~~~~p~~~~~~-~ll~~~~~~g~~~~a~~~ 243 (603)
++++|+..++.+....|.+...|..+..++...+. +++|+..++++.+.... +...+. .....+...|..++|...
T Consensus 88 ~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~~~Al~~ 166 (334)
T d1dcea1 88 LVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAF 166 (334)
T ss_dssp HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCch-hhhhhhhHHHHHHHhccccHHHHHH
Confidence 34555666666665555555565555555444433 55666666665554222 333332 233444455666666666
Q ss_pred HHHHHhCCCCCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 007461 244 FLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEKGILEDPSIYASLICSFASITEVKLAEELFKEAEEK 323 (603)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 323 (603)
++.+...++. +..+|+.+...+.+.|++++|...++..... .|+. ..+...+...+..+++...+......
T Consensus 167 ~~~~i~~~p~----~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~---~~~~~~~~~l~~~~~a~~~~~~~l~~ 237 (334)
T d1dcea1 167 TDSLITRNFS----NYSSWHYRSCLLPQLHPQPDSGPQGRLPENV--LLKE---LELVQNAFFTDPNDQSAWFYHRWLLG 237 (334)
T ss_dssp HHTTTTTTCC----CHHHHHHHHHHHHHHSCCCCSSSCCSSCHHH--HHHH---HHHHHHHHHHCSSCSHHHHHHHHHHS
T ss_pred HHHHHHcCCC----CHHHHHHHHHHHHHhcCHHHHHHHHHHhHHh--HHHH---HHHHHHHHHhcchhHHHHHHHHHHHh
Confidence 6555444332 3445666666666666665554444332221 1111 11122233344444555555555544
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 007461 324 GMLRDPEVCLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLISQ 393 (603)
Q Consensus 324 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 393 (603)
. +++...+..+...+...|+.++|...+.+..+.++ .+..+|..+...+...|++++|++.+++..+.
T Consensus 238 ~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~l 305 (334)
T d1dcea1 238 R-AEPLFRCELSVEKSTVLQSELESCKELQELEPENK-WCLLTIILLMRALDPLLYEKETLQYFSTLKAV 305 (334)
T ss_dssp C-CCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCH-HHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHH
T ss_pred C-cchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCc-hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 3 22333444555566666677777777776665554 24455666667777777777777777777664
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.95 E-value=2e-08 Score=90.59 Aligned_cols=151 Identities=9% Similarity=-0.100 Sum_probs=107.9
Q ss_pred HHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHHHH
Q 007461 133 WDSIVSLSEDFKIYNVLP---DAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVY 209 (603)
Q Consensus 133 ~~~a~~~~~~~~~~~~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 209 (603)
.+.++.-+++........ ...+|..+...|.+.|++++|+..|++.....|.++.+|+.+..+|.+.|++++|+..|
T Consensus 15 ~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~ 94 (259)
T d1xnfa_ 15 QEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAF 94 (259)
T ss_dssp HHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhh
Confidence 345555556655442111 23466667788888999999999999999988888999999999999999999999999
Q ss_pred HHHHhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 007461 210 EKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEK 288 (603)
Q Consensus 210 ~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 288 (603)
++..+.... +..++..+..+|...|++++|.+.|+...+..+.. ......+...+.+.+..+.+..+.......
T Consensus 95 ~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (259)
T d1xnfa_ 95 DSVLELDPT-YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPND----PFRSLWLYLAEQKLDEKQAKEVLKQHFEKS 168 (259)
T ss_dssp HHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHCHHHHHHHHHHHHHHS
T ss_pred hHHHHHHhh-hhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhcccc----HHHHHHHHHHHHHhhhHHHHHHHHHHhhcc
Confidence 998886433 56678888888999999999999998887765432 233333444455555555555555555443
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.50 E-value=2.2e-06 Score=65.71 Aligned_cols=91 Identities=8% Similarity=-0.077 Sum_probs=51.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHH
Q 007461 124 IRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYY 203 (603)
Q Consensus 124 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 203 (603)
...+.+.|++++|+..|++.++.. +.+...|..+..++...|++++|+..+.......|.+..+|..+..++...|+++
T Consensus 10 g~~~~~~g~~~eAi~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~ 88 (117)
T d1elwa_ 10 GNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFE 88 (117)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcC-CcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCHH
Confidence 444555566666666666555554 4445555555555555556666655555555555555555555555555555555
Q ss_pred HHHHHHHHHHhC
Q 007461 204 STILVYEKMKSA 215 (603)
Q Consensus 204 ~a~~~~~~m~~~ 215 (603)
+|+..|++..+.
T Consensus 89 ~A~~~~~~a~~~ 100 (117)
T d1elwa_ 89 EAKRTYEEGLKH 100 (117)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHh
Confidence 555555555543
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.49 E-value=3.3e-06 Score=71.30 Aligned_cols=120 Identities=15% Similarity=0.108 Sum_probs=59.0
Q ss_pred HHccCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 007461 444 YGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNRAREFDMC 523 (603)
Q Consensus 444 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a 523 (603)
+...|++++|++.|+++. +|+..+|..+..+|...|++++|++.|++.++... -+...|..+..+|.+.|++++|
T Consensus 15 ~~~~~d~~~Al~~~~~i~----~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp-~~~~a~~~~g~~~~~~g~~~~A 89 (192)
T d1hh8a_ 15 AADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK-HLAVAYFQRGMLYYQTEKYDLA 89 (192)
T ss_dssp HHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHCCCHHHHHHHHHhcC----CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhh-hhhhhHHHHHHHHHhhccHHHH
Confidence 344455555555554321 34444555555555555555555555555554321 1233455555555555555555
Q ss_pred HHHHHHHHHCCC--------------CCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 007461 524 VKFYNEFRMNGG--------------VID-RAIAGIMVGVFSKLSQIEELVKLLQDMKSE 568 (603)
Q Consensus 524 ~~~~~~~~~~~~--------------~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 568 (603)
++.|++...... .++ ..++..+..++.+.|++++|.+.++...+.
T Consensus 90 ~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~ 149 (192)
T d1hh8a_ 90 IKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 149 (192)
T ss_dssp HHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 555555443210 001 123344555566666666666666666544
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.48 E-value=3.2e-06 Score=71.36 Aligned_cols=124 Identities=13% Similarity=0.046 Sum_probs=84.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHH
Q 007461 124 IRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYY 203 (603)
Q Consensus 124 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 203 (603)
...+...|+++.|++.|+.+ .+|+..+|..+...+...|++++|++.|++..+.++....+|..+..+|.+.|+++
T Consensus 12 g~~~~~~~d~~~Al~~~~~i----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~~ 87 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYD 87 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHCCCHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhccHH
Confidence 45566778888888888754 25677777778888888888888888888888888878888888888888888888
Q ss_pred HHHHHHHHHHhCCCCCC---------------hhhHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 007461 204 STILVYEKMKSAGIVLD---------------SGCYCQIMEAYYKIGDSEKVAALFLECKSRK 251 (603)
Q Consensus 204 ~a~~~~~~m~~~~~~p~---------------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 251 (603)
+|+..|++.+....... ..++..+..++.+.|++++|.+.|+......
T Consensus 88 ~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~ 150 (192)
T d1hh8a_ 88 LAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 150 (192)
T ss_dssp HHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 88888887665311100 1233344555555566666655555554433
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.45 E-value=5.9e-06 Score=75.16 Aligned_cols=127 Identities=12% Similarity=0.005 Sum_probs=59.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhC----C-CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCC-CCHHHHHHH
Q 007461 336 VLMYIEEGLVEKTLDVVESMKNA----K-LKISDCISCAIVNGFSKRRGYWAAVKVYEQLISQ----GCI-PGQVTYASI 405 (603)
Q Consensus 336 ~~~~~~~g~~~~a~~~~~~~~~~----~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~-p~~~~~~~l 405 (603)
...|...|++++|.+.|.+..+. + ......+|..+...|.+.|++++|+..+++.... |.. ....++..+
T Consensus 44 a~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l 123 (290)
T d1qqea_ 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFEL 123 (290)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHH
Confidence 45666777777777777665432 1 1111234555566666666666666666554331 100 001223333
Q ss_pred HHHHH-hcCChHHHHHHHHHHHHc----CCCc-CHhhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 007461 406 INAYC-RIALYSKAEKVFIEMQQK----GFDK-CVVAYSSMVAMYGKTGRIRDAMWLVAKMKA 462 (603)
Q Consensus 406 l~~~~-~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 462 (603)
...|. ..|++++|...+.+..+. +.++ ...++..+...|.+.|++++|...|++...
T Consensus 124 ~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~ 186 (290)
T d1qqea_ 124 GEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIK 186 (290)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHH
Confidence 33332 235555555555544321 1011 122344455555555555555555555443
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.45 E-value=3e-06 Score=69.19 Aligned_cols=95 Identities=11% Similarity=0.054 Sum_probs=70.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcC
Q 007461 121 KLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLH 200 (603)
Q Consensus 121 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 200 (603)
......+.+.|++++|+..|++..+.+ +.+...|..+...|...|++++|...|++..+..+.+..+|..+..++...|
T Consensus 14 ~~~gn~~~~~~~y~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g 92 (159)
T d1a17a_ 14 KTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALG 92 (159)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCHHHHHHHhhhccccc-hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcC
Confidence 344556677777888888877777765 5567777777777777777777777777777777777777777777777777
Q ss_pred cHHHHHHHHHHHHhCC
Q 007461 201 MYYSTILVYEKMKSAG 216 (603)
Q Consensus 201 ~~~~a~~~~~~m~~~~ 216 (603)
++++|+..+++..+..
T Consensus 93 ~~~eA~~~~~~a~~~~ 108 (159)
T d1a17a_ 93 KFRAALRDYETVVKVK 108 (159)
T ss_dssp CHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHcC
Confidence 7777777777777653
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.38 E-value=1.1e-05 Score=73.35 Aligned_cols=200 Identities=9% Similarity=0.009 Sum_probs=103.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHc----C-CCcCHh
Q 007461 366 ISCAIVNGFSKRRGYWAAVKVYEQLISQ----GCIP-GQVTYASIINAYCRIALYSKAEKVFIEMQQK----G-FDKCVV 435 (603)
Q Consensus 366 ~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~-~~~~~~ 435 (603)
.|......|...+++++|++.|.+..+. +-.+ -..+|..+...|.+.|++++|...++...+. | ......
T Consensus 39 ~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 118 (290)
T d1qqea_ 39 LCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGAN 118 (290)
T ss_dssp HHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHH
Confidence 4566666666677777777777665542 1111 1235666666666777777777776665432 1 111133
Q ss_pred hHHHHHHHHH-ccCCHHHHHHHHHHHHHc----CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-----
Q 007461 436 AYSSMVAMYG-KTGRIRDAMWLVAKMKAK----GCEP-NVWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDK----- 504 (603)
Q Consensus 436 ~~~~li~~~~-~~g~~~~A~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~----- 504 (603)
++..+...|. ..|++++|.+.+++..+. +..+ -..++..+...+...|++++|...|+++.........
T Consensus 119 ~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~ 198 (290)
T d1qqea_ 119 FKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSL 198 (290)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGH
T ss_pred HHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhH
Confidence 4445555553 346777777777665432 1111 1234555666667777777777777766543221110
Q ss_pred -HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCH---HHHHHHHHHHHc--cCCHHHHHHHHHHH
Q 007461 505 -VSYTTVISAYNRAREFDMCVKFYNEFRMNGGV-IDR---AIAGIMVGVFSK--LSQIEELVKLLQDM 565 (603)
Q Consensus 505 -~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-~~~---~~~~~l~~~~~~--~g~~~~A~~~~~~m 565 (603)
..+...+..+...|+++.|...+++..+.... ++. .....++.++.. .+.+++|+..|+++
T Consensus 199 ~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~ 266 (290)
T d1qqea_ 199 KDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNF 266 (290)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 11233344455566777777777666554322 111 133444554443 23466666665543
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.37 E-value=6.3e-06 Score=63.03 Aligned_cols=94 Identities=11% Similarity=-0.048 Sum_probs=71.1
Q ss_pred HHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCHH
Q 007461 159 VASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSE 238 (603)
Q Consensus 159 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~ 238 (603)
...+.+.|++++|+..|++..+..|.+..+|..+..+|...|++++|+..+....+.+.. +...|..+..++...|+++
T Consensus 10 g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~g~~~~~~~~~~ 88 (117)
T d1elwa_ 10 GNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKAAALEFLNRFE 88 (117)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccc-hhhHHHHHHHHHHHccCHH
Confidence 455667788888888888888877777788888888888888888888888877776433 6677777777788888888
Q ss_pred HHHHHHHHHHhCCCC
Q 007461 239 KVAALFLECKSRKLD 253 (603)
Q Consensus 239 ~a~~~~~~~~~~~~~ 253 (603)
+|...|+.....++.
T Consensus 89 ~A~~~~~~a~~~~p~ 103 (117)
T d1elwa_ 89 EAKRTYEEGLKHEAN 103 (117)
T ss_dssp HHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHHhCCC
Confidence 888888777765543
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.36 E-value=4.6e-06 Score=68.04 Aligned_cols=94 Identities=9% Similarity=0.004 Sum_probs=72.4
Q ss_pred HHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCH
Q 007461 158 LVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDS 237 (603)
Q Consensus 158 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~ 237 (603)
....|.+.|++++|+..|++..+.+|.+...|..+...|...|++++|+..|++.++.... +..+|..+..++...|++
T Consensus 16 ~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~-~~~a~~~~g~~~~~~g~~ 94 (159)
T d1a17a_ 16 QANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMALGKF 94 (159)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHccc-chHHHHHHHHHHHHcCCH
Confidence 3456677888888888888888888888888888888888888888888888888775432 556777788888888888
Q ss_pred HHHHHHHHHHHhCCC
Q 007461 238 EKVAALFLECKSRKL 252 (603)
Q Consensus 238 ~~a~~~~~~~~~~~~ 252 (603)
++|...+++....++
T Consensus 95 ~eA~~~~~~a~~~~p 109 (159)
T d1a17a_ 95 RAALRDYETVVKVKP 109 (159)
T ss_dssp HHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHcCC
Confidence 888888887776653
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.35 E-value=2.8e-06 Score=72.62 Aligned_cols=98 Identities=11% Similarity=-0.051 Sum_probs=48.7
Q ss_pred CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHh
Q 007461 115 PEKSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMG 194 (603)
Q Consensus 115 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 194 (603)
|+...+......+.+.|++++|+..|++..+.. +.+...|..+..+|.+.|+++.|+..|+...+..|.+..+|..+..
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~ 80 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 80 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHH
Confidence 344444444555555555555555555554443 3344445445555555555555555555555444444444555555
Q ss_pred hhhhcCcHHHHHHHHHHHH
Q 007461 195 GYNKLHMYYSTILVYEKMK 213 (603)
Q Consensus 195 ~~~~~~~~~~a~~~~~~m~ 213 (603)
+|.+.|++++|+..|++..
T Consensus 81 ~~~~l~~~~~A~~~~~~al 99 (201)
T d2c2la1 81 CQLEMESYDEAIANLQRAY 99 (201)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHH
Confidence 5555555555555444443
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.31 E-value=3.9e-06 Score=71.63 Aligned_cols=99 Identities=11% Similarity=0.037 Sum_probs=77.9
Q ss_pred CCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 007461 150 PDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIME 229 (603)
Q Consensus 150 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 229 (603)
|+...+......+.+.|++++|+..|++.....|.+..+|+.+..+|.+.|++++|+..|++.++.... +..+|..+..
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~-~~~a~~~lg~ 80 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQ 80 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCC-cHHHHHHHHH
Confidence 666667777788888888888888888888888888888888888888888888888888888765322 5667777888
Q ss_pred HHHHcCCHHHHHHHHHHHHh
Q 007461 230 AYYKIGDSEKVAALFLECKS 249 (603)
Q Consensus 230 ~~~~~g~~~~a~~~~~~~~~ 249 (603)
+|.+.|++++|...|++...
T Consensus 81 ~~~~l~~~~~A~~~~~~al~ 100 (201)
T d2c2la1 81 CQLEMESYDEAIANLQRAYS 100 (201)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHH
Confidence 88888888888888876654
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.31 E-value=0.0011 Score=59.99 Aligned_cols=136 Identities=13% Similarity=0.153 Sum_probs=74.5
Q ss_pred CChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 007461 219 LDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEALKFFRDMKEKGILEDPSIYA 298 (603)
Q Consensus 219 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 298 (603)
||..-...+.+.|.+.|.++.|..+|..+.. |..++..+.+.++++.|.+++.+.. +..+|.
T Consensus 12 ~n~~d~~~i~~~c~~~~lye~A~~lY~~~~d------------~~rl~~~~v~l~~~~~avd~~~k~~------~~~~~k 73 (336)
T d1b89a_ 12 PNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN------------FGRLASTLVHLGEYQAAVDGARKAN------STRTWK 73 (336)
T ss_dssp C----------------CTTTHHHHHHHTTC------------HHHHHHHHHTTTCHHHHHHHHHHHT------CHHHHH
T ss_pred CCcCCHHHHHHHHHHCCCHHHHHHHHHhCCC------------HHHHHHHHHhhccHHHHHHHHHHcC------CHHHHH
Confidence 3443444566667777777777777764421 6667777777777777777665431 455677
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcC
Q 007461 299 SLICSFASITEVKLAEELFKEAEEKGMLRDPEVCLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRR 378 (603)
Q Consensus 299 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 378 (603)
.+..+|.+......+ .+.......++.....++..|-..|.+++...+++...... ..+...++.++..|++.+
T Consensus 74 ~~~~~l~~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~-~~~~~~~~~L~~lyak~~ 147 (336)
T d1b89a_ 74 EVCFACVDGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFK 147 (336)
T ss_dssp HHHHHHHHTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCC-ccchHHHHHHHHHHHHhC
Confidence 777777666555432 12223334456666677777777777777777777665432 245556677777776643
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.31 E-value=0.00096 Score=58.99 Aligned_cols=222 Identities=11% Similarity=0.024 Sum_probs=107.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 007461 331 VCLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSK----RRGYWAAVKVYEQLISQGCIPGQVTYASII 406 (603)
Q Consensus 331 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll 406 (603)
.+..|...+...|++++|.+.|++..+.| +...+..|...|.. ..+...|...+......+. ......+.
T Consensus 4 ~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~~---~~a~~~l~ 77 (265)
T d1ouva_ 4 ELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNY---SNGCHLLG 77 (265)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC---HHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccccc---cchhhccc
Confidence 33334444444444444444444444433 22223333333333 3345555555555444331 12222222
Q ss_pred HHHH----hcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHH----ccCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHH
Q 007461 407 NAYC----RIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYG----KTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDM 478 (603)
Q Consensus 407 ~~~~----~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~----~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 478 (603)
..+. ...+.+.|...++...+.|.. .....+...+. .......+...+...... .+...+..|...
T Consensus 78 ~~~~~~~~~~~~~~~a~~~~~~a~~~g~~---~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~L~~~ 151 (265)
T d1ouva_ 78 NLYYSGQGVSQNTNKALQYYSKACDLKYA---EGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL---NDGDGCTILGSL 151 (265)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT---TCHHHHHHHHHH
T ss_pred cccccccccchhhHHHHHHHhhhhhhhhh---hHHHhhcccccCCCcccchhHHHHHHhhhhhcc---cccchhhhhhhh
Confidence 2221 134455566666655555421 11122222222 133445555555555442 345555555555
Q ss_pred HHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 007461 479 HGR----AKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNR----AREFDMCVKFYNEFRMNGGVIDRAIAGIMVGVFS 550 (603)
Q Consensus 479 ~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 550 (603)
|.. ..+...+...++...+.| +......+...|.. ..++++|+.+|++..+.| ++..+..|...|.
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~LG~~y~ 225 (265)
T d1ouva_ 152 YDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAMQY 225 (265)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH
T ss_pred hccCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccchhhhhhhHhhhhccc---CHHHHHHHHHHHH
Confidence 553 345566666666666543 44444445444443 456777777777777664 3445555666555
Q ss_pred c----cCCHHHHHHHHHHHHhCCC
Q 007461 551 K----LSQIEELVKLLQDMKSEGT 570 (603)
Q Consensus 551 ~----~g~~~~A~~~~~~m~~~g~ 570 (603)
+ ..+.++|.++|++..+.|.
T Consensus 226 ~G~g~~~n~~~A~~~~~kAa~~g~ 249 (265)
T d1ouva_ 226 NGEGVTRNEKQAIENFKKGCKLGA 249 (265)
T ss_dssp TTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred cCCCCccCHHHHHHHHHHHHHCcC
Confidence 4 2356677777777766663
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.29 E-value=4.1e-06 Score=63.51 Aligned_cols=90 Identities=7% Similarity=-0.145 Sum_probs=63.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCc
Q 007461 122 LLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHM 201 (603)
Q Consensus 122 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 201 (603)
.+...+.+.|++++|+..|++..+.+ +-+..+|..+..++.+.|++++|+..|++..+..|.+..+|..+...|...|+
T Consensus 21 ~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g~ 99 (112)
T d1hxia_ 21 EEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHN 99 (112)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHhhhcccc-cccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCCC
Confidence 34555666777777777777776665 44566777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHH
Q 007461 202 YYSTILVYEKM 212 (603)
Q Consensus 202 ~~~a~~~~~~m 212 (603)
+++|++.+++.
T Consensus 100 ~~~A~~~l~~~ 110 (112)
T d1hxia_ 100 ANAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77777777654
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.17 E-value=5.7e-06 Score=62.69 Aligned_cols=89 Identities=8% Similarity=-0.090 Sum_probs=59.2
Q ss_pred HHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCH
Q 007461 158 LVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDS 237 (603)
Q Consensus 158 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~ 237 (603)
+...+.+.|++++|+..|+++....|.+..+|..+..++.+.|++++|+..|++.++.... +..++..+...|...|++
T Consensus 22 ~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~la~~y~~~g~~ 100 (112)
T d1hxia_ 22 EGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTNEHNA 100 (112)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccc-cccchHHHHHHHHHCCCH
Confidence 3444566677777777777777766666777777777777777777777777776665322 455666666666677777
Q ss_pred HHHHHHHHHH
Q 007461 238 EKVAALFLEC 247 (603)
Q Consensus 238 ~~a~~~~~~~ 247 (603)
++|.+.|++.
T Consensus 101 ~~A~~~l~~~ 110 (112)
T d1hxia_ 101 NAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7776666654
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.10 E-value=0.0027 Score=55.94 Aligned_cols=227 Identities=13% Similarity=0.040 Sum_probs=122.0
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 007461 260 HMYKILCDSLGKSGRAFEALKFFRDMKEKGILEDPSIYASLICSFAS----ITEVKLAEELFKEAEEKGMLRDPEVCLKL 335 (603)
Q Consensus 260 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 335 (603)
..+..|...+.+.+++++|++.|++..+.| +...+..|-..+.. ..+...+...+....+.+ ++.....+
T Consensus 3 ~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~~~l 76 (265)
T d1ouva_ 3 KELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLL 76 (265)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchhhcc
Confidence 455666666666677777777777666654 33444444444433 335555555555555443 22223333
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH----h
Q 007461 336 VLMYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINAYC----R 411 (603)
Q Consensus 336 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~----~ 411 (603)
...+... .....+.+.|...++...+.|.. .....+...+. .
T Consensus 77 ~~~~~~~-------------------------------~~~~~~~~~a~~~~~~a~~~g~~---~a~~~l~~~~~~~~~~ 122 (265)
T d1ouva_ 77 GNLYYSG-------------------------------QGVSQNTNKALQYYSKACDLKYA---EGCASLGGIYHDGKVV 122 (265)
T ss_dssp HHHHHHT-------------------------------SSSCCCHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHCSSS
T ss_pred ccccccc-------------------------------cccchhhHHHHHHHhhhhhhhhh---hHHHhhcccccCCCcc
Confidence 2222210 00123445555555555544321 11111111111 1
Q ss_pred cCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHc----cCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHh----cC
Q 007461 412 IALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGK----TGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGR----AK 483 (603)
Q Consensus 412 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g 483 (603)
......+...+......+ +...+..|...|.. ..+...+...++...+.| +......+...|.. ..
T Consensus 123 ~~~~~~a~~~~~~~~~~~---~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~ 196 (265)
T d1ouva_ 123 TRDFKKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATK 196 (265)
T ss_dssp CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCC
T ss_pred cchhHHHHHHhhhhhccc---ccchhhhhhhhhccCCCcccccccchhhhhcccccc---ccccccchhhhcccCccccc
Confidence 233455555555544433 34555556555554 345666777777666643 44555555545543 56
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCC
Q 007461 484 NLRQVEKLWKEMERRKVTPDKVSYTTVISAYNR----AREFDMCVKFYNEFRMNGG 535 (603)
Q Consensus 484 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~ 535 (603)
+.++|...|++..+.| +...+..|...|.+ ..+.++|.++|++..+.|.
T Consensus 197 d~~~A~~~~~~aa~~g---~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~ 249 (265)
T d1ouva_ 197 NFKEALARYSKACELE---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA 249 (265)
T ss_dssp CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred chhhhhhhHhhhhccc---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcC
Confidence 7888888888888776 45566667766664 3478889999888877663
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.09 E-value=6.6e-06 Score=63.15 Aligned_cols=95 Identities=9% Similarity=0.032 Sum_probs=54.1
Q ss_pred HHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcC---cHHHHHHHHHHHHhCCCCCC-hhhHHHHHHHHH
Q 007461 157 RLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLH---MYYSTILVYEKMKSAGIVLD-SGCYCQIMEAYY 232 (603)
Q Consensus 157 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~ 232 (603)
.+++.+...+++++|++.|+.....+|.++.++..+..++.+.+ ++++|+.+|+++.+.+..|+ ..++..+..+|.
T Consensus 4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~ 83 (122)
T d1nzna_ 4 AVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNY 83 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHH
Confidence 34455555566666666666666666666666666666655433 33456666666655443332 224555666666
Q ss_pred HcCCHHHHHHHHHHHHhCC
Q 007461 233 KIGDSEKVAALFLECKSRK 251 (603)
Q Consensus 233 ~~g~~~~a~~~~~~~~~~~ 251 (603)
+.|++++|++.|+++.+.+
T Consensus 84 ~~g~~~~A~~~~~~aL~~~ 102 (122)
T d1nzna_ 84 RLKEYEKALKYVRGLLQTE 102 (122)
T ss_dssp HTTCHHHHHHHHHHHHHHC
T ss_pred HHhhhHHHHHHHHHHHHhC
Confidence 6666666666666665544
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.00 E-value=3.1e-05 Score=59.29 Aligned_cols=94 Identities=14% Similarity=0.031 Sum_probs=73.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCh---HHHHHHHHHHHhcCCcc--hhhHHHHHhh
Q 007461 121 KLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKF---KIANTLLQVFITDGEIA--LLAFNSAMGG 195 (603)
Q Consensus 121 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~---~~a~~~~~~~~~~~~~~--~~~~~~l~~~ 195 (603)
..++..+...+++++|.+.|+.....+ +.+..++..+..++.+.++. ++|+.+|+++...++.+ ..+|..+..+
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~ 81 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG 81 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence 456777888888888988888888876 66778888888888765544 46888888887766532 4578888888
Q ss_pred hhhcCcHHHHHHHHHHHHhC
Q 007461 196 YNKLHMYYSTILVYEKMKSA 215 (603)
Q Consensus 196 ~~~~~~~~~a~~~~~~m~~~ 215 (603)
|.+.|++++|++.|++.++.
T Consensus 82 y~~~g~~~~A~~~~~~aL~~ 101 (122)
T d1nzna_ 82 NYRLKEYEKALKYVRGLLQT 101 (122)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHh
Confidence 88899999999999888885
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.97 E-value=0.00011 Score=60.07 Aligned_cols=97 Identities=6% Similarity=-0.048 Sum_probs=57.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-C-------------CHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCc
Q 007461 119 TLKLLIRYLVQSKKWDSIVSLSEDFKIYNVL-P-------------DAHTCSRLVASCVRARKFKIANTLLQVFITDGEI 184 (603)
Q Consensus 119 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~-------------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 184 (603)
.+......+.+.|++++|+..|++.++.... + -..+|+.+..+|.+.|++++|+..++.....+|.
T Consensus 15 ~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~ 94 (170)
T d1p5qa1 15 IVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSN 94 (170)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhcccc
Confidence 4445566777788888888888777654210 0 0123444445555666666666666666666665
Q ss_pred chhhHHHHHhhhhhcCcHHHHHHHHHHHHhC
Q 007461 185 ALLAFNSAMGGYNKLHMYYSTILVYEKMKSA 215 (603)
Q Consensus 185 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 215 (603)
++.+|..+..+|...|++++|+..|+...+.
T Consensus 95 ~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 125 (170)
T d1p5qa1 95 NEKGLSRRGEAHLAVNDFELARADFQKVLQL 125 (170)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred chhhhHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 6666666666666666666666666666554
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.92 E-value=0.0072 Score=54.56 Aligned_cols=261 Identities=8% Similarity=0.133 Sum_probs=152.0
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 007461 262 YKILCDSLGKSGRAFEALKFFRDMKEKGILEDPSIYASLICSFASITEVKLAEELFKEAEEKGMLRDPEVCLKLVLMYIE 341 (603)
Q Consensus 262 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 341 (603)
-..+++.|.+.|.++.|..+|..+.. |..++..+.+.++++.|.+.+... .+..+|..+...+.+
T Consensus 17 ~~~i~~~c~~~~lye~A~~lY~~~~d---------~~rl~~~~v~l~~~~~avd~~~k~------~~~~~~k~~~~~l~~ 81 (336)
T d1b89a_ 17 IQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVD 81 (336)
T ss_dssp ------------CTTTHHHHHHHTTC---------HHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhCCC---------HHHHHHHHHhhccHHHHHHHHHHc------CCHHHHHHHHHHHHh
Confidence 44567778899999999999986643 677888888999999988877654 367788888888888
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 007461 342 EGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIALYSKAEKV 421 (603)
Q Consensus 342 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~ 421 (603)
.....-+ .+.......+......++..|-..|.+++.+.+++..... -..+...++-++..|++.+ .++..+.
T Consensus 82 ~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak~~-~~kl~e~ 154 (336)
T d1b89a_ 82 GKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKFK-PQKMREH 154 (336)
T ss_dssp TTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTTC-HHHHHHH
T ss_pred CcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHHHHHhC-hHHHHHH
Confidence 7766543 2223333345555678889999999999999999987643 2466777888888888865 3443333
Q ss_pred HHHHHHcCCCc--------CHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHH
Q 007461 422 FIEMQQKGFDK--------CVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWK 493 (603)
Q Consensus 422 ~~~~~~~~~~~--------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 493 (603)
+..... .+.+ ....|.-++..|.+.|++++|..+. .++ .++..-....+..+.+.++.+...++..
T Consensus 155 l~~~s~-~y~~~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~~---i~~--~~~~~~~~~f~e~~~k~~N~e~~~~~i~ 228 (336)
T d1b89a_ 155 LELFWS-RVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITM---MNH--PTDAWKEGQFKDIITKVANVELYYRAIQ 228 (336)
T ss_dssp HHHHST-TSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHH---HHS--TTTTCCHHHHHHHHHHCSSTHHHHHHHH
T ss_pred HHhccc-cCCHHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHH---HHc--chhhhhHHHHHHHHHccCChHHHHHHHH
Confidence 333211 0111 1223455666666666666665443 222 3344444455666666666666666666
Q ss_pred HHHhCCCCCCHHHHHHHH-------------HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHH
Q 007461 494 EMERRKVTPDKVSYTTVI-------------SAYNRAREFDMCVKFYNEFRMNGGVIDRAIAGIMVGVFSKLSQIEE 557 (603)
Q Consensus 494 ~m~~~~~~p~~~~~~~li-------------~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 557 (603)
...+. .|+ ..+.++ ..+.+.+++.....+++.....+ +..+.+++.+.|...++++.
T Consensus 229 ~yL~~--~p~--~i~~lL~~v~~~~d~~r~V~~~~k~~~l~li~p~Le~v~~~n---~~~vn~al~~lyie~~d~~~ 298 (336)
T d1b89a_ 229 FYLEF--KPL--LLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHN---NKSVNESLNNLFITEEDYQA 298 (336)
T ss_dssp HHHHH--CGG--GHHHHHHHHGGGCCHHHHHHHHHHTTCTTTTHHHHHHHHTTC---CHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHc--CHH--HHHHHHHHhccCCCHHHHHHHHHhcCCcHHHHHHHHHHHHcC---hHHHHHHHHHHHhCcchhHH
Confidence 55542 232 223333 33344444444444444444333 34566677777777777544
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.81 E-value=0.00025 Score=57.91 Aligned_cols=116 Identities=9% Similarity=0.008 Sum_probs=91.4
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHhhCCCCCCC-------------HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 007461 85 SFLHGMLKDPQTQELAYDYYNEAKKLPEFRPE-------------KSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPD 151 (603)
Q Consensus 85 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 151 (603)
..-..+.+.++..+ |+..|+.+++..+-.+. ..+|+.+..+|.+.|++++|+..++..++.+ +.+
T Consensus 18 ~~G~~~~~~~~~~~-Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~-p~~ 95 (170)
T d1p5qa1 18 ERGTVYFKEGKYKQ-ALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD-SNN 95 (170)
T ss_dssp HHHHHHHHHTCHHH-HHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC
T ss_pred HHHHHHHHcCCHHH-HHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhcc-ccc
Confidence 33445677788877 99999988754221111 2457778889999999999999999999887 668
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcH
Q 007461 152 AHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMY 202 (603)
Q Consensus 152 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 202 (603)
..++..+..+|...|++++|...|+...+.+|.+..+...+.....+.+..
T Consensus 96 ~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~ 146 (170)
T d1p5qa1 96 EKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQ 146 (170)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999888877777766655444433
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.78 E-value=0.00015 Score=56.02 Aligned_cols=94 Identities=17% Similarity=0.129 Sum_probs=56.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchh-------hHHHH
Q 007461 120 LKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALL-------AFNSA 192 (603)
Q Consensus 120 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~l 192 (603)
+..+...+.+.|++++|+..|++.++.+ +.+..++..+..+|.+.|++++|+..++++....+.+.. +|..+
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~l 85 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence 3345556666777777777777766665 445666666666677777777777777666654443322 33444
Q ss_pred HhhhhhcCcHHHHHHHHHHHHh
Q 007461 193 MGGYNKLHMYYSTILVYEKMKS 214 (603)
Q Consensus 193 ~~~~~~~~~~~~a~~~~~~m~~ 214 (603)
...+...+++++|++.|+....
T Consensus 86 g~~~~~~~~~~~A~~~~~kal~ 107 (128)
T d1elra_ 86 GNSYFKEEKYKDAIHFYNKSLA 107 (128)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHh
Confidence 4445555566666666655544
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.77 E-value=0.00028 Score=56.50 Aligned_cols=96 Identities=7% Similarity=-0.060 Sum_probs=50.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCC----CCC-----------HHHHHHHHHHHHccCChHHHHHHHHHHHhcCCc
Q 007461 120 LKLLIRYLVQSKKWDSIVSLSEDFKIYNV----LPD-----------AHTCSRLVASCVRARKFKIANTLLQVFITDGEI 184 (603)
Q Consensus 120 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~-----------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 184 (603)
+......+.+.|++.+|+..|++....-. .++ ..+|.-+..+|.+.|++++|+..++.+...+|.
T Consensus 20 ~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~ 99 (153)
T d2fbna1 20 IKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKN 99 (153)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhccccccch
Confidence 33444556666777777777666654310 011 123333444455555555555555555555555
Q ss_pred chhhHHHHHhhhhhcCcHHHHHHHHHHHHhC
Q 007461 185 ALLAFNSAMGGYNKLHMYYSTILVYEKMKSA 215 (603)
Q Consensus 185 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 215 (603)
+..+|..+..++...|++++|+..|+...+.
T Consensus 100 ~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l 130 (153)
T d2fbna1 100 NVKALYKLGVANMYFGFLEEAKENLYKAASL 130 (153)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred hhhhhHHhHHHHHHcCCHHHHHHHHHHHHHh
Confidence 5555555555555555555555555555543
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.75 E-value=0.00019 Score=58.68 Aligned_cols=94 Identities=12% Similarity=0.092 Sum_probs=45.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCC--------------C-CCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcc
Q 007461 121 KLLIRYLVQSKKWDSIVSLSEDFKIYN--------------V-LPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIA 185 (603)
Q Consensus 121 ~~l~~~~~~~~~~~~a~~~~~~~~~~~--------------~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 185 (603)
......+.+.|++++|+..|+++.+.. . +.....+..+..++.+.|++++|+..+..+.+..|.+
T Consensus 31 ~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~ 110 (169)
T d1ihga1 31 KNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSN 110 (169)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhh
Confidence 344555667788888877777664320 0 0112223333334444444444444444444444444
Q ss_pred hhhHHHHHhhhhhcCcHHHHHHHHHHHHh
Q 007461 186 LLAFNSAMGGYNKLHMYYSTILVYEKMKS 214 (603)
Q Consensus 186 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 214 (603)
+.+|..+..+|...|++++|++.|++..+
T Consensus 111 ~~a~~~~g~~~~~l~~~~~A~~~~~~al~ 139 (169)
T d1ihga1 111 TKALYRRAQGWQGLKEYDQALADLKKAQE 139 (169)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhHHHhHHHHHHHccCHHHHHHHHHHHHH
Confidence 44444444444444444444444444444
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.72 E-value=0.00033 Score=57.08 Aligned_cols=115 Identities=10% Similarity=-0.022 Sum_probs=73.3
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCC-----------HHHHHHHHHHHHccCChHHHHHHHHHHHhcCC
Q 007461 118 STLKLLIRYLVQSKKWDSIVSLSEDFKIY---NVLPD-----------AHTCSRLVASCVRARKFKIANTLLQVFITDGE 183 (603)
Q Consensus 118 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~-----------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 183 (603)
..+......+.+.|++.+|+..|++.... ....+ ...|.-+..+|.+.|++++|+..++.....+|
T Consensus 16 ~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p 95 (168)
T d1kt1a1 16 AIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDS 95 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhccc
Confidence 34555667777788888888888776532 11111 12344455566777777888777777777777
Q ss_pred cchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHH
Q 007461 184 IALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYK 233 (603)
Q Consensus 184 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 233 (603)
.+..+|..+..+|...|++++|+..|++.++..+. +......+-....+
T Consensus 96 ~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~-n~~~~~~l~~~~~~ 144 (168)
T d1kt1a1 96 ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ-NKAARLQIFMCQKK 144 (168)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 77777777777777778888888777777765322 44444444433333
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.71 E-value=0.00014 Score=56.29 Aligned_cols=58 Identities=12% Similarity=0.024 Sum_probs=36.6
Q ss_pred HHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHh
Q 007461 157 RLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKS 214 (603)
Q Consensus 157 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 214 (603)
.+...+.+.|++++|+..|.+.++.+|.+..+|..+..+|.+.|++++|++.++++++
T Consensus 9 ~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 66 (128)
T d1elra_ 9 ELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIE 66 (128)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHH
Confidence 3455566666666666666666666666666666666666666666666666666554
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.71 E-value=0.00026 Score=58.21 Aligned_cols=71 Identities=8% Similarity=0.052 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHh-----CCCCCChhh
Q 007461 153 HTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKS-----AGIVLDSGC 223 (603)
Q Consensus 153 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~-----~~~~p~~~~ 223 (603)
..+..+...+.+.|++++|+..++.+....|.+...|..++.+|.+.|+..+|++.|+++.+ .|+.|...+
T Consensus 68 ~a~~~la~~~~~~g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l 143 (179)
T d2ff4a2 68 LAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 143 (179)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHHHCCCchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence 34555666666777777777777777777777777777777777777777777777766533 466665543
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.71 E-value=0.00032 Score=56.09 Aligned_cols=112 Identities=13% Similarity=-0.027 Sum_probs=89.9
Q ss_pred hhHHHHHHhcCCCChHHHHHHHHHHhhCCCCCC---C-----------HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 007461 83 FDSFLHGMLKDPQTQELAYDYYNEAKKLPEFRP---E-----------KSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNV 148 (603)
Q Consensus 83 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p---~-----------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 148 (603)
+..-...+.+.+++.+ |+..|..+.......+ + ..+|+.+...|.+.|++++|+..++...+.+
T Consensus 20 ~~~~G~~~f~~~~y~~-A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~~- 97 (153)
T d2fbna1 20 IKEEGNEFFKKNEINE-AIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID- 97 (153)
T ss_dssp HHHHHHHHHHTTCHHH-HHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-
T ss_pred HHHHHHHHHHcCCHHH-HHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhcccccc-
Confidence 4444566778888887 9999998875322111 1 2356778889999999999999999999887
Q ss_pred CCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhh
Q 007461 149 LPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGY 196 (603)
Q Consensus 149 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 196 (603)
+.+..+|..+..++...|++++|+..|+...+.+|.+..+.+.+-.+.
T Consensus 98 p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~ 145 (153)
T d2fbna1 98 KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCV 145 (153)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred chhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 678899999999999999999999999999999888877776655443
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.69 E-value=4.6e-05 Score=74.88 Aligned_cols=109 Identities=7% Similarity=-0.116 Sum_probs=43.1
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh
Q 007461 297 YASLICSFASITEVKLAEELFKEAEEKGMLRDPEVCLKLVLMYIEEGLVEKTLDVVESMKNAKLKISDCISCAIVNGFSK 376 (603)
Q Consensus 297 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 376 (603)
+..+...+.+.|+.+.|...+....... ....+..+...+...|++++|...|.+..+..+. +...|+.+...+..
T Consensus 123 ~~~lg~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~-~~~~~~~Lg~~~~~ 198 (497)
T d1ya0a1 123 SSQLGIISNKQTHTSAIVKPQSSSCSYI---CQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPS-NGQPYNQLAILASS 198 (497)
T ss_dssp --------------------CCHHHHHH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-BSHHHHHHHHHHHH
T ss_pred HHHhHHHHHhCCCHHHHHHHHHHHhCCC---HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-chHHHHHHHHHHHH
Confidence 3333444444444444444443333211 1123444555555555555555555555554442 33455555555555
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 007461 377 RRGYWAAVKVYEQLISQGCIPGQVTYASIINAYC 410 (603)
Q Consensus 377 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 410 (603)
.|+..+|+..|.+..... +|-..++..|...+.
T Consensus 199 ~~~~~~A~~~y~ral~~~-~~~~~a~~nL~~~~~ 231 (497)
T d1ya0a1 199 KGDHLTTIFYYCRSIAVK-FPFPAASTNLQKALS 231 (497)
T ss_dssp TTCHHHHHHHHHHHHSSS-BCCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHH
Confidence 555555555555555433 344444555544443
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.68 E-value=4.6e-05 Score=67.31 Aligned_cols=125 Identities=13% Similarity=-0.063 Sum_probs=79.0
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHH
Q 007461 127 LVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTI 206 (603)
Q Consensus 127 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 206 (603)
..+.|++++|+..+++.++.. +.|...+..+...++..|++++|.+.|+...+..|.....+..+...+...+..+++.
T Consensus 6 aL~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a~ 84 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDFA 84 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHHHH
Confidence 345678888888888887776 6677788888888888888888888888888777766666666655554444333322
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 007461 207 LVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKL 252 (603)
Q Consensus 207 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 252 (603)
.-...-...+-.++...+......+.+.|+.++|.++++++.+..+
T Consensus 85 ~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p 130 (264)
T d1zbpa1 85 QGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQ 130 (264)
T ss_dssp TSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC
T ss_pred HHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC
Confidence 2111111111112223334445667777888888888887765543
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.67 E-value=0.0009 Score=54.85 Aligned_cols=125 Identities=8% Similarity=0.034 Sum_probs=83.8
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 007461 440 MVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNRARE 519 (603)
Q Consensus 440 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 519 (603)
........|++++|.+.|.+.... .+.... ......+-+...-..+... ....+..+..++...|+
T Consensus 17 ~g~~~~~~g~~e~A~~~~~~AL~l--~rG~~l--------~~~~~~~w~~~~r~~l~~~----~~~a~~~la~~~~~~g~ 82 (179)
T d2ff4a2 17 AGVHAAAAGRFEQASRHLSAALRE--WRGPVL--------DDLRDFQFVEPFATALVED----KVLAHTAKAEAEIACGR 82 (179)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTT--CCSSTT--------GGGTTSTTHHHHHHHHHHH----HHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhh--Cccccc--------ccCcchHHHHHHHHHHHHH----HHHHHHHHHHHHHHCCC
Confidence 345667788888888888888764 221110 0000101111111111111 12457778888999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh-----CCCCCCHHHHHH
Q 007461 520 FDMCVKFYNEFRMNGGVIDRAIAGIMVGVFSKLSQIEELVKLLQDMKS-----EGTKLDERLYHS 579 (603)
Q Consensus 520 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~g~~~~~~~~~~ 579 (603)
+++|+..++.+.+.... +...|..++.+|.+.|+.++|++.|+++.+ .|+.|...+-..
T Consensus 83 ~~~Al~~~~~al~~~P~-~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l~~l 146 (179)
T d2ff4a2 83 ASAVIAELEALTFEHPY-REPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRAL 146 (179)
T ss_dssp HHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHH
T ss_pred chHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHHHHH
Confidence 99999999999887544 778899999999999999999999998743 599998765433
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.63 E-value=3.8e-05 Score=75.51 Aligned_cols=108 Identities=11% Similarity=-0.081 Sum_probs=38.4
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 007461 262 YKILCDSLGKSGRAFEALKFFRDMKEKGILEDPSIYASLICSFASITEVKLAEELFKEAEEKGMLRDPEVCLKLVLMYIE 341 (603)
Q Consensus 262 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 341 (603)
+..+...+.+.|+.++|...++...... ...++..+...+...|++++|...+.++.+.. +.+...|+.|...|..
T Consensus 123 ~~~lg~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~-P~~~~~~~~Lg~~~~~ 198 (497)
T d1ya0a1 123 SSQLGIISNKQTHTSAIVKPQSSSCSYI---CQHCLVHLGDIARYRNQTSQAESYYRHAAQLV-PSNGQPYNQLAILASS 198 (497)
T ss_dssp --------------------CCHHHHHH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTBSHHHHHHHHHHHH
T ss_pred HHHhHHHHHhCCCHHHHHHHHHHHhCCC---HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHH
Confidence 4444444444444444444443332210 01233344444444555555555555554443 1233445555555555
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 007461 342 EGLVEKTLDVVESMKNAKLKISDCISCAIVNGF 374 (603)
Q Consensus 342 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 374 (603)
.|+..+|...|.+....+. |-..++..|...+
T Consensus 199 ~~~~~~A~~~y~ral~~~~-~~~~a~~nL~~~~ 230 (497)
T d1ya0a1 199 KGDHLTTIFYYCRSIAVKF-PFPAASTNLQKAL 230 (497)
T ss_dssp TTCHHHHHHHHHHHHSSSB-CCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhCCC-CCHHHHHHHHHHH
Confidence 5555555555555444433 2333444444433
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.59 E-value=0.0008 Score=54.70 Aligned_cols=118 Identities=9% Similarity=-0.040 Sum_probs=93.1
Q ss_pred hhHHHHHHhcCCCChHHHHHHHHHHhhCCCCCC--C-----------HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 007461 83 FDSFLHGMLKDPQTQELAYDYYNEAKKLPEFRP--E-----------KSTLKLLIRYLVQSKKWDSIVSLSEDFKIYNVL 149 (603)
Q Consensus 83 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p--~-----------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 149 (603)
+......+.+.++..+ |...|+.++......+ + ..+|+.+..++.+.|++++|+..++...+.+ +
T Consensus 18 ~~e~G~~~~~~~~~~~-A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~-p 95 (168)
T d1kt1a1 18 VKEKGTVYFKGGKYVQ-AVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD-S 95 (168)
T ss_dssp HHHHHHHHHHTTCHHH-HHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T
T ss_pred HHHHHHHHHHcCCHHH-HHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhcc-c
Confidence 4455666778888877 9999988764211111 1 1346667888899999999999999999886 7
Q ss_pred CCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcH
Q 007461 150 PDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMY 202 (603)
Q Consensus 150 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 202 (603)
.+..+|..+..++...|++++|...|+.+....|.+..++..+-....+.+..
T Consensus 96 ~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~ 148 (168)
T d1kt1a1 96 ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAKEH 148 (168)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhH
Confidence 78899999999999999999999999999999988888887776666555443
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.57 E-value=0.00077 Score=54.88 Aligned_cols=84 Identities=7% Similarity=-0.027 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 007461 505 VSYTTVISAYNRAREFDMCVKFYNEFRMNGGVIDRAIAGIMVGVFSKLSQIEELVKLLQDMKSEGTKLDERLYHSAMNAL 584 (603)
Q Consensus 505 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~a~ 584 (603)
..|..+..++.+.|++++|+..++++++.... +...|..+..+|.+.|++++|+..|++..+.. +.+......+....
T Consensus 78 ~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~-~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~-p~n~~~~~~l~~~~ 155 (169)
T d1ihga1 78 SCVLNIGACKLKMSDWQGAVDSCLEALEIDPS-NTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVK 155 (169)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcccchhhhhhhhhhhhhhh-hhhHHHhHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 45677778888899999999999998886543 66788888889999999999999999888753 23445555555444
Q ss_pred HhcCcH
Q 007461 585 RDAGLQ 590 (603)
Q Consensus 585 ~~~g~~ 590 (603)
.+....
T Consensus 156 ~~l~~~ 161 (169)
T d1ihga1 156 QKIKAQ 161 (169)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 443333
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.55 E-value=0.00024 Score=56.15 Aligned_cols=95 Identities=13% Similarity=0.045 Sum_probs=57.2
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcc----------CChHHHHHHHHHHHhcCCcchhhHHHHHhhhhh
Q 007461 129 QSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRA----------RKFKIANTLLQVFITDGEIALLAFNSAMGGYNK 198 (603)
Q Consensus 129 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~----------~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 198 (603)
+.+.+++|+..|+...+.. |.+..++..+..+|... +.+++|+..|++..+.+|.+..+|..+..+|..
T Consensus 9 r~~~fe~A~~~~e~al~~~-P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~ 87 (145)
T d1zu2a1 9 RILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS 87 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHccHHHHHHHHHHHHhhC-CcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHHHH
Confidence 3445667777777766665 55566666666555432 334567777777777777777777777777665
Q ss_pred cCc-----------HHHHHHHHHHHHhCCCCCChhhHHH
Q 007461 199 LHM-----------YYSTILVYEKMKSAGIVLDSGCYCQ 226 (603)
Q Consensus 199 ~~~-----------~~~a~~~~~~m~~~~~~p~~~~~~~ 226 (603)
.|+ +++|.+.|++.++. .|+...+..
T Consensus 88 ~g~~~~~~~~~~~~~~~A~~~~~kal~l--~P~~~~~~~ 124 (145)
T d1zu2a1 88 FAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLK 124 (145)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHH
T ss_pred cccchhhHHHHHHhHHHhhhhhhccccc--CCCHHHHHH
Confidence 443 45566666665553 344444443
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.42 E-value=0.00024 Score=56.21 Aligned_cols=125 Identities=14% Similarity=0.022 Sum_probs=66.2
Q ss_pred HccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhhcCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCHHHHHH
Q 007461 163 VRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNKLHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAA 242 (603)
Q Consensus 163 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~ 242 (603)
-+.+.+++|+..|+...+..|.+..++..+..++...+++..+.+ ..+.+++|+.
T Consensus 8 ~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e-------------------------~~~~~~~Ai~ 62 (145)
T d1zu2a1 8 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISD-------------------------AKQMIQEAIT 62 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHH-------------------------HHHHHHHHHH
T ss_pred HHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhH-------------------------HHHHHHHHHH
Confidence 344567778888888877777777777777777765443322211 1122233444
Q ss_pred HHHHHHhCCCCCCCccHHHHHHHHHHHhccC-----------CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHH
Q 007461 243 LFLECKSRKLDSTPFSTHMYKILCDSLGKSG-----------RAFEALKFFRDMKEKGILEDPSIYASLICSFASITEVK 311 (603)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-----------~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~ 311 (603)
.|++..+.++. +..+|..+..+|...| .+++|.+.|++..+. .|+...|..-+..+ .
T Consensus 63 ~~~kAl~l~P~----~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l--~P~~~~~~~~L~~~------~ 130 (145)
T d1zu2a1 63 KFEEALLIDPK----KDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLEMT------A 130 (145)
T ss_dssp HHHHHHHHCTT----CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHH------H
T ss_pred HHHHHHHhcch----hhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhccccc--CCCHHHHHHHHHHH------H
Confidence 44444433322 1234444444443322 356777777777664 56655555444443 3
Q ss_pred HHHHHHHHHHHcC
Q 007461 312 LAEELFKEAEEKG 324 (603)
Q Consensus 312 ~a~~~~~~~~~~~ 324 (603)
.+.+++.++.+.|
T Consensus 131 ka~~~~~e~~k~~ 143 (145)
T d1zu2a1 131 KAPQLHAEAYKQG 143 (145)
T ss_dssp THHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHh
Confidence 4455555555544
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.15 E-value=0.00043 Score=60.86 Aligned_cols=53 Identities=15% Similarity=0.053 Sum_probs=34.2
Q ss_pred HhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 007461 410 CRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAK 463 (603)
Q Consensus 410 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 463 (603)
.+.|++++|...+++..+.. +.+...+..+...|+..|++++|.+.++...+.
T Consensus 7 L~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l 59 (264)
T d1zbpa1 7 LSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL 59 (264)
T ss_dssp TTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 34566666666666666654 555666666666666666666666666666654
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.85 E-value=0.0047 Score=44.19 Aligned_cols=77 Identities=9% Similarity=-0.127 Sum_probs=54.2
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC-----CCCC-HHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhH
Q 007461 116 EKSTLKLLIRYLVQSKKWDSIVSLSEDFKIYN-----VLPD-AHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAF 189 (603)
Q Consensus 116 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 189 (603)
+...+-.+...+.+.|++++|+..|++..+.. ..++ ..++..+..++.+.|++++|+..++++.+..|.+..++
T Consensus 4 saddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~ 83 (95)
T d1tjca_ 4 TAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN 83 (95)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHH
Confidence 34455567778888888888888888776541 1112 45677777788888888888888888887777666666
Q ss_pred HHH
Q 007461 190 NSA 192 (603)
Q Consensus 190 ~~l 192 (603)
+.+
T Consensus 84 ~Nl 86 (95)
T d1tjca_ 84 GNL 86 (95)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=96.83 E-value=0.01 Score=47.09 Aligned_cols=90 Identities=10% Similarity=-0.019 Sum_probs=57.4
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCC-CCC----------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CCCCCH--
Q 007461 478 MHGRAKNLRQVEKLWKEMERRKV-TPD----------KVSYTTVISAYNRAREFDMCVKFYNEFRMN-----GGVIDR-- 539 (603)
Q Consensus 478 ~~~~~g~~~~a~~~~~~m~~~~~-~p~----------~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~-- 539 (603)
.+...|++++|+..|++.++... .|+ ...|+.+..+|...|++++|+..+++.++. ...++.
T Consensus 18 ~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~ 97 (156)
T d2hr2a1 18 RQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGK 97 (156)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccc
Confidence 34455666666666666643210 011 245777777888888888888887776642 111221
Q ss_pred ---HHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 007461 540 ---AIAGIMVGVFSKLSQIEELVKLLQDMKS 567 (603)
Q Consensus 540 ---~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 567 (603)
..+..+..+|...|++++|++.|++..+
T Consensus 98 ~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~ 128 (156)
T d2hr2a1 98 LWISAVYSRALALDGLGRGAEAMPEFKKVVE 128 (156)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 2456678888889999999988888765
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=96.75 E-value=0.0043 Score=49.41 Aligned_cols=26 Identities=12% Similarity=0.050 Sum_probs=16.0
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007461 223 CYCQIMEAYYKIGDSEKVAALFLECK 248 (603)
Q Consensus 223 ~~~~ll~~~~~~g~~~~a~~~~~~~~ 248 (603)
.+..+..+|...|++++|.+.|++..
T Consensus 102 a~~~~g~~~~~lg~~eeA~~~~~~Al 127 (156)
T d2hr2a1 102 AVYSRALALDGLGRGAEAMPEFKKVV 127 (156)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666666666544
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.28 E-value=0.009 Score=42.60 Aligned_cols=61 Identities=5% Similarity=-0.033 Sum_probs=33.6
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHhcCCc-------chhhHHHHHhhhhhcCcHHHHHHHHHHHHhC
Q 007461 155 CSRLVASCVRARKFKIANTLLQVFITDGEI-------ALLAFNSAMGGYNKLHMYYSTILVYEKMKSA 215 (603)
Q Consensus 155 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 215 (603)
+-.+...+.+.|+++.|+..|++..+..+. ...+++.+..++.+.|++++|+..+++.++.
T Consensus 8 c~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l 75 (95)
T d1tjca_ 8 SFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (95)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHh
Confidence 334555666667777776666665543211 1344555555555555555555555555553
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=96.02 E-value=0.14 Score=38.72 Aligned_cols=83 Identities=10% Similarity=0.050 Sum_probs=44.0
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----cC
Q 007461 482 AKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNR----AREFDMCVKFYNEFRMNGGVIDRAIAGIMVGVFSK----LS 553 (603)
Q Consensus 482 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g 553 (603)
..+.++|.+.+++..+.| +......|...|.. ..+.++|.++|++..+.| ++.....|...|.. ..
T Consensus 36 ~~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~ 109 (133)
T d1klxa_ 36 QINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVK 109 (133)
T ss_dssp TSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCC
T ss_pred ccCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHHHHHhhhhccC---cchHHHHHHHHHHcCCccCC
Confidence 345556666666655544 33344444444433 235666666666666654 33334444444443 34
Q ss_pred CHHHHHHHHHHHHhCCC
Q 007461 554 QIEELVKLLQDMKSEGT 570 (603)
Q Consensus 554 ~~~~A~~~~~~m~~~g~ 570 (603)
+.++|.+++++..+.|.
T Consensus 110 d~~~A~~~~~~Aa~~G~ 126 (133)
T d1klxa_ 110 NEKQAVKTFEKACRLGS 126 (133)
T ss_dssp CHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHCCC
Confidence 56667777766666553
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=95.72 E-value=0.22 Score=37.50 Aligned_cols=81 Identities=12% Similarity=0.012 Sum_probs=38.8
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCC
Q 007461 448 GRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGR----AKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNR----ARE 519 (603)
Q Consensus 448 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~ 519 (603)
.+.++|.+.+++..+.| +......|...|.. ..+.++|.++|++..+.| +......|...|.. ..+
T Consensus 37 ~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d 110 (133)
T d1klxa_ 37 INKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKN 110 (133)
T ss_dssp SCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCC
T ss_pred cCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHHHHHhhhhccC---cchHHHHHHHHHHcCCccCCC
Confidence 34445555555544443 22333333333322 335566666666665544 33333444444443 245
Q ss_pred HHHHHHHHHHHHHCC
Q 007461 520 FDMCVKFYNEFRMNG 534 (603)
Q Consensus 520 ~~~a~~~~~~~~~~~ 534 (603)
.++|.++|++..+.|
T Consensus 111 ~~~A~~~~~~Aa~~G 125 (133)
T d1klxa_ 111 EKQAVKTFEKACRLG 125 (133)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHCC
Confidence 666666666665554
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=95.70 E-value=0.23 Score=36.08 Aligned_cols=61 Identities=16% Similarity=0.175 Sum_probs=26.6
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcC
Q 007461 403 ASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKG 464 (603)
Q Consensus 403 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 464 (603)
...++.+...|+-++-.++++.+.+.+ ++++...-.+..+|.+.|...++.+++.+.-+.|
T Consensus 90 dlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe~G 150 (161)
T d1wy6a1 90 NKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKKG 150 (161)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHh
Confidence 333444444444444444444444332 3444444444444444444444444444444443
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=94.99 E-value=0.41 Score=34.73 Aligned_cols=139 Identities=11% Similarity=0.004 Sum_probs=71.2
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCCHHHHHH
Q 007461 376 KRRGYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMW 455 (603)
Q Consensus 376 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 455 (603)
-.|..++..+++.+.... .+..-||.+|--....-+-+-..+.++.+-+. + | ..++++......
T Consensus 14 ldG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~-F--D----------ls~C~Nlk~vv~ 77 (161)
T d1wy6a1 14 LDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY-F--D----------LDKCQNLKSVVE 77 (161)
T ss_dssp HTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG-S--C----------GGGCSCTHHHHH
T ss_pred HhhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhhh-c--C----------chhhhcHHHHHH
Confidence 345556666666655542 34445555555444444444444444444322 0 1 011222222222
Q ss_pred HHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 007461 456 LVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDKVSYTTVISAYNRAREFDMCVKFYNEFRMNGG 535 (603)
Q Consensus 456 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 535 (603)
.+-.+ ..+...+...++....+|+-++-.++++++.+. -+|++.....+..+|.+.|+..++-+++.++-++|.
T Consensus 78 C~~~~-----n~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn-~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~ 151 (161)
T d1wy6a1 78 CGVIN-----NTLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGE 151 (161)
T ss_dssp HHHHT-----TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHh-----cchHHHHHHHHHHHHHhccHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhH
Confidence 22111 123334455556666666766666776665553 355666666666677777777777777777666665
Q ss_pred C
Q 007461 536 V 536 (603)
Q Consensus 536 ~ 536 (603)
+
T Consensus 152 K 152 (161)
T d1wy6a1 152 K 152 (161)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=93.80 E-value=2.6 Score=39.15 Aligned_cols=355 Identities=10% Similarity=0.034 Sum_probs=182.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHHhhhhh
Q 007461 119 TLKLLIRYLVQSKKWDSIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAMGGYNK 198 (603)
Q Consensus 119 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 198 (603)
.-...+..+.+.+++...+..+. ..+.+...-.....+....|+...|...+..+-..+...+...+
T Consensus 74 lr~~~l~~L~~~~~w~~~~~~~~-----~~p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~~~p~~c~-------- 140 (450)
T d1qsaa1 74 LQSRFVNELARREDWRGLLAFSP-----EKPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPNACD-------- 140 (450)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHCC-----SCCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCTHHH--------
T ss_pred HHHHHHHHHHhccCHHHHHHhcc-----CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchHHH--------
Confidence 33445666777777766554332 22345554455666677777777777666655444333333322
Q ss_pred cCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhccCCHHHH
Q 007461 199 LHMYYSTILVYEKMKSAGIVLDSGCYCQIMEAYYKIGDSEKVAALFLECKSRKLDSTPFSTHMYKILCDSLGKSGRAFEA 278 (603)
Q Consensus 199 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 278 (603)
.+|..+.+.|. ++...+-.-+......|+...|..+...+.... .......+.........
T Consensus 141 --------~l~~~~~~~~~-lt~~~~~~R~~~~l~~~~~~~a~~l~~~l~~~~-------~~~~~a~~~l~~~p~~~--- 201 (450)
T d1qsaa1 141 --------KLFSVWRASGK-QDPLAYLERIRLAMKAGNTGLVTVLAGQMPADY-------QTIASAIISLANNPNTV--- 201 (450)
T ss_dssp --------HHHHHHHHTTC-SCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGG-------HHHHHHHHHHHHCGGGH---
T ss_pred --------HHHHHHHhcCC-CCHHHHHHHHHHHHHcCChhhHHHHHhhCChhH-------HHHHHHHHHHHhChHhH---
Confidence 23333444332 233333344445556677777777665432211 12233333333222222
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHc--cCCHHHHHHHHHHHHHcCCCCCHHHHHHH----HHHHHHcCCHHHHHHHH
Q 007461 279 LKFFRDMKEKGILEDPSIYASLICSFAS--ITEVKLAEELFKEAEEKGMLRDPEVCLKL----VLMYIEEGLVEKTLDVV 352 (603)
Q Consensus 279 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~--~g~~~~a~~~~~~~~~~~~~~~~~~~~~l----~~~~~~~g~~~~a~~~~ 352 (603)
.... ... .++......+..++.+ ..+.+.+..++......... +..-...+ .......+..+.+...+
T Consensus 202 ~~~~---~~~--~~~~~~~~~~~~~l~rla~~d~~~a~~~l~~~~~~~~~-~~~~~~~~~~~~a~~~~~~~~~~~a~~~~ 275 (450)
T d1qsaa1 202 LTFA---RTT--GATDFTRQMAAVAFASVARQDAENARLMIPSLAQAQQL-NEDQIQELRDIVAWRLMGNDVTDEQAKWR 275 (450)
T ss_dssp HHHH---HHS--CCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHTSCSTTCCHHHHHHH
T ss_pred HHHH---hcC--CCChhhhHHHHHHHHHHhccChhHHHHHHHhhhhcccc-cHHHHHHHHHHHHHHHHHcCchHHHHHHH
Confidence 2111 111 1222222233333332 24677777777776654322 22222222 22223346667777777
Q ss_pred HHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCc
Q 007461 353 ESMKNAKLKISDCISCAIVNGFSKRRGYWAAVKVYEQLISQGCIPGQVTYASIINAYCRIALYSKAEKVFIEMQQKGFDK 432 (603)
Q Consensus 353 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 432 (603)
........ +.....-.+......+++..+...++.|.... .......--+..++...|+.+.|...|...... +
T Consensus 276 ~~~~~~~~--~~~~~~w~~~~al~~~~~~~~~~~~~~l~~~~-~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~~---~ 349 (450)
T d1qsaa1 276 DDAIMRSQ--STSLIERRVRMALGTGDRRGLNTWLARLPMEA-KEKDEWRYWQADLLLERGREAEAKEILHQLMQQ---R 349 (450)
T ss_dssp HHHHHTCC--CHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTG-GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS---C
T ss_pred Hhhccccc--chHHHHHHHHHHHHcCChHHHHHHHHhcCccc-ccHHHHHHHHHHHHHHcCChhhHHHHHHHHhcC---C
Confidence 66665543 33333344555566788888888887764321 122334455667788888888888888887542 3
Q ss_pred CHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCC--CCH----hHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 007461 433 CVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCE--PNV----WIYNSLMDMHGRAKNLRQVEKLWKEMERRKVTPDKVS 506 (603)
Q Consensus 433 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--p~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~ 506 (603)
+ .|..|... +.|..-. +....+. +.. ..-..-+..+...|....|...|..+... . +...
T Consensus 350 ~--fYG~LAa~--~Lg~~~~-------~~~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~-~--~~~~ 415 (450)
T d1qsaa1 350 G--FYPMVAAQ--RIGEEYE-------LKIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS-K--SKTE 415 (450)
T ss_dssp S--HHHHHHHH--HTTCCCC-------CCCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT-C--CHHH
T ss_pred C--hHHHHHHH--HcCCCCC-------CCcCCCCccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhC-C--CHHH
Confidence 3 34333322 1221100 0000000 000 00112345567789999999998888753 2 4455
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 007461 507 YTTVISAYNRAREFDMCVKFYNEFR 531 (603)
Q Consensus 507 ~~~li~~~~~~g~~~~a~~~~~~~~ 531 (603)
...+.....+.|.++.|+.......
T Consensus 416 ~~~la~lA~~~g~~~~aI~a~~~~~ 440 (450)
T d1qsaa1 416 QAQLARYAFNNQWWDLSVQATIAGK 440 (450)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCChhHHHHHHHHHH
Confidence 6677777888899999887776653
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=91.17 E-value=0.6 Score=32.04 Aligned_cols=59 Identities=14% Similarity=0.231 Sum_probs=31.7
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchhhHHHHH
Q 007461 135 SIVSLSEDFKIYNVLPDAHTCSRLVASCVRARKFKIANTLLQVFITDGEIALLAFNSAM 193 (603)
Q Consensus 135 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 193 (603)
++.+-++.+...++.|++....+.+++|.+-+++..|.++|+.+......+...|..++
T Consensus 24 e~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~~~~k~~y~yil 82 (105)
T d1v54e_ 24 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVI 82 (105)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 44444455555555666666666666666666666666666655544333333444443
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.88 E-value=2 Score=31.22 Aligned_cols=72 Identities=10% Similarity=0.022 Sum_probs=39.5
Q ss_pred CCHHhHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHccCChHHHHHHHHHHHhcCCcchh
Q 007461 115 PEKSTLKLLIRYLVQSKK---WDSIVSLSEDFKIYNVLPDA-HTCSRLVASCVRARKFKIANTLLQVFITDGEIALL 187 (603)
Q Consensus 115 p~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 187 (603)
|++.+--...-+++++.+ .++++.+++++.+.+ +.+. ..+-.|.-+|.+.|+++.|++.++.+.+..|.+..
T Consensus 33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~-p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~q 108 (124)
T d2pqrb1 33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA-ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ 108 (124)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH
T ss_pred CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcC-chhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHH
Confidence 445554455555555433 346666666666543 2232 23334445566667777777777666666554433
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=89.56 E-value=0.99 Score=30.92 Aligned_cols=65 Identities=15% Similarity=0.139 Sum_probs=51.6
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 007461 519 EFDMCVKFYNEFRMNGGVIDRAIAGIMVGVFSKLSQIEELVKLLQDMKSEGTKLDERLYHSAMNAL 584 (603)
Q Consensus 519 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~a~ 584 (603)
|.-+..+-++.+...+..|++.+..+-+.+|.|.+++.-|+++++..+.+ ..++..+|..+++-+
T Consensus 21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K-~~~~k~~y~yilqel 85 (105)
T d1v54e_ 21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQEL 85 (105)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCcHHHHHHHHHHH
Confidence 55567777888888888899999999999999999999999999988765 334556777776544
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.99 E-value=3 Score=30.20 Aligned_cols=72 Identities=8% Similarity=0.011 Sum_probs=38.6
Q ss_pred CCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHH
Q 007461 502 PDKVSYTTVISAYNRA---REFDMCVKFYNEFRMNGGVIDR-AIAGIMVGVFSKLSQIEELVKLLQDMKSEGTKLDERL 576 (603)
Q Consensus 502 p~~~~~~~li~~~~~~---g~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~ 576 (603)
|...|--....++.++ .+.++++.+++++.+.+.. +. ..+-.|.-+|.+.|++++|.+.++.+++. .|+..-
T Consensus 33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~-~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~i--eP~n~q 108 (124)
T d2pqrb1 33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAES-RRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--ERNNKQ 108 (124)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGG-GHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHH
T ss_pred CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCch-hHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcc--CCCcHH
Confidence 3344433444444444 3445666677666654321 22 34445555666777777777777776653 455433
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=84.78 E-value=15 Score=33.71 Aligned_cols=82 Identities=10% Similarity=-0.021 Sum_probs=40.5
Q ss_pred cCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHH
Q 007461 412 IALYSKAEKVFIEMQQKGFDKCVVAYSSMVAMYGKTGRIRDAMWLVAKMKAKGCEPNVWIYNSLMDMHGRAKNLRQVEKL 491 (603)
Q Consensus 412 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~ 491 (603)
.+..+.+...+......+ .+.......+....+.+++..+...+..|.... .-...-.--+..++...|+.++|...
T Consensus 265 ~~~~~~a~~~~~~~~~~~--~~~~~~~w~~~~al~~~~~~~~~~~~~~l~~~~-~~~~r~~YW~gRa~~~~G~~~~A~~~ 341 (450)
T d1qsaa1 265 NDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGLNTWLARLPMEA-KEKDEWRYWQADLLLERGREAEAKEI 341 (450)
T ss_dssp TTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTG-GGSHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCchHHHHHHHHhhcccc--cchHHHHHHHHHHHHcCChHHHHHHHHhcCccc-ccHHHHHHHHHHHHHHcCChhhHHHH
Confidence 344555555555544433 222333334444445566666666666554321 11122222344556666666666666
Q ss_pred HHHHH
Q 007461 492 WKEME 496 (603)
Q Consensus 492 ~~~m~ 496 (603)
|....
T Consensus 342 ~~~~a 346 (450)
T d1qsaa1 342 LHQLM 346 (450)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 66664
|