Citrus Sinensis ID: 007512
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 600 | 2.2.26 [Sep-21-2011] | |||||||
| O04130 | 624 | D-3-phosphoglycerate dehy | no | no | 0.905 | 0.870 | 0.775 | 0.0 | |
| Q58424 | 524 | D-3-phosphoglycerate dehy | yes | no | 0.858 | 0.982 | 0.404 | 1e-108 | |
| P73821 | 554 | D-3-phosphoglycerate dehy | N/A | no | 0.868 | 0.940 | 0.402 | 1e-101 | |
| O27051 | 525 | D-3-phosphoglycerate dehy | yes | no | 0.873 | 0.998 | 0.389 | 1e-101 | |
| P35136 | 525 | D-3-phosphoglycerate dehy | yes | no | 0.848 | 0.969 | 0.393 | 1e-100 | |
| O29445 | 527 | D-3-phosphoglycerate dehy | yes | no | 0.868 | 0.988 | 0.391 | 1e-98 | |
| Q60HD7 | 533 | D-3-phosphoglycerate dehy | N/A | no | 0.635 | 0.714 | 0.452 | 4e-82 | |
| O08651 | 533 | D-3-phosphoglycerate dehy | yes | no | 0.618 | 0.696 | 0.462 | 5e-82 | |
| O43175 | 533 | D-3-phosphoglycerate dehy | yes | no | 0.635 | 0.714 | 0.450 | 6e-82 | |
| A5A6P1 | 533 | D-3-phosphoglycerate dehy | yes | no | 0.635 | 0.714 | 0.450 | 9e-82 |
| >sp|O04130|SERA_ARATH D-3-phosphoglycerate dehydrogenase, chloroplastic OS=Arabidopsis thaliana GN=At1g17745 PE=1 SV=2 | Back alignment and function desciption |
|---|
Score = 872 bits (2253), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 421/543 (77%), Positives = 488/543 (89%)
Query: 58 KPTVLIAEKLGQAGLDLLNEFANVDCAYNLSPEELCTKISLCDALIVRSGTKVNRDVFES 117
KP +L+ EKLG+AG++LL EF +VDC+Y+LSPE+L K++ DALIVRSGTKV R+VFE+
Sbjct: 82 KPRILVTEKLGEAGVNLLREFGDVDCSYDLSPEDLKKKVAESDALIVRSGTKVTREVFEA 141
Query: 118 SAGRLKVVGRAGVGIDNVDLAAATEFGCLVVNAPTANTVAAAEHGIALLAAMARNVAQAD 177
+ GRLKVVGRAGVGIDNVDL AATE GCLVVNAPTANTVAAAEHGIALLA+MARNVAQAD
Sbjct: 142 AKGRLKVVGRAGVGIDNVDLQAATEHGCLVVNAPTANTVAAAEHGIALLASMARNVAQAD 201
Query: 178 ASVKAGKWQRNKYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPADRARA 237
AS+KAGKW+R+KYVGVSLVGKTLAV+GFGKVG+EVARRAKGLGM VI+HDPYAPADRARA
Sbjct: 202 ASIKAGKWERSKYVGVSLVGKTLAVMGFGKVGTEVARRAKGLGMTVISHDPYAPADRARA 261
Query: 238 IGVDLVSFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVIDEEAL 297
+GVDLVSFD+AI+TADF+SLHMPLTPAT KV NDETF KMKKGVR+INVARGGVIDE+AL
Sbjct: 262 LGVDLVSFDQAISTADFVSLHMPLTPATKKVFNDETFSKMKKGVRLINVARGGVIDEDAL 321
Query: 298 VRALDSGRVAQAALDVFTEEPPPADSKLVQHERVTVTPHLGASTMEAQEGVAIEIAEAVV 357
VRALD+G VAQAALDVF EEPP DS+L+QHE VTVTPHLGAST EAQEGVAIEIAEAV
Sbjct: 322 VRALDAGIVAQAALDVFCEEPPSKDSRLIQHENVTVTPHLGASTKEAQEGVAIEIAEAVA 381
Query: 358 GALKGELAATAVNAPMVPAEVLTELKPFVELAEKLGRLAVQLVAGGSGVKTVKVSYASSR 417
GALKGEL+ATAVNAPMV EVL+EL P++ LAEKLGRLAVQL +GG GV++++V Y S+R
Sbjct: 382 GALKGELSATAVNAPMVAPEVLSELTPYIVLAEKLGRLAVQLASGGKGVQSIRVVYRSAR 441
Query: 418 APDDLDTRLLRAMITKGLIEPISDVFVNLVNADYTAKQRGLRLTEERILLDGSPESPLEF 477
DDLDTRLLRAMITKG+IEPISD +VNLVNAD+ AKQ+GLR++EER+++D SPE P++
Sbjct: 442 DRDDLDTRLLRAMITKGIIEPISDSYVNLVNADFIAKQKGLRISEERMVVDSSPEYPVDS 501
Query: 478 IQVQIANVESKFASAISESGEIKVEGRVKDGVPHLTKVGSFEVDVSLEGSIILCRQVDQP 537
IQVQI NVES FA A+S++G+I +EG+VK GVPHLT VGSF VDVSLEG++ILCRQVDQP
Sbjct: 502 IQVQILNVESNFAGAVSDAGDISIEGKVKYGVPHLTCVGSFGVDVSLEGNLILCRQVDQP 561
Query: 538 GMIGTVGSILGSENVNVSFMSVGRVAPRKHAVMAIGVDEQPRKETLKKIGDVPAIEEFVF 597
GMIG VG+ILG +NVNV+FMSVGR RK A+MAIGVDE+P +TL++IG V AIEEFVF
Sbjct: 562 GMIGQVGNILGEQNVNVNFMSVGRTVLRKQAIMAIGVDEEPDNKTLERIGGVSAIEEFVF 621
Query: 598 LKL 600
LKL
Sbjct: 622 LKL 624
|
Arabidopsis thaliana (taxid: 3702) EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: 9EC: 5 |
| >sp|Q58424|SERA_METJA D-3-phosphoglycerate dehydrogenase OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=serA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 394 bits (1013), Expect = e-108, Method: Compositional matrix adjust.
Identities = 221/546 (40%), Positives = 325/546 (59%), Gaps = 31/546 (5%)
Query: 61 VLIAEKLGQAGLDLLNEFANVDCAYNLSPEELCTKISLCDALIVRSGTKVNRDVFESSAG 120
+L+ + L + + +L E V+ A L+ EEL KI D L+VRSGTKV RDV E A
Sbjct: 4 ILVTDPLHEDAIKILEEVGEVEVATGLTKEELLEKIKDADVLVVRSGTKVTRDVIEK-AE 62
Query: 121 RLKVVGRAGVGIDNVDLAAATEFGCLVVNAPTANTVAAAEHGIALLAAMARNVAQADASV 180
+LKV+GRAGVG+DN+D+ AATE G +VVNAP A++++ AE + L+ A ARN+ QA AS+
Sbjct: 63 KLKVIGRAGVGVDNIDVEAATEKGIIVVNAPDASSISVAELTMGLMLAAARNIPQATASL 122
Query: 181 KAGKWQRNKYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPADRARAIGV 240
K G+W R ++ G+ L GKTL V+G G++G +V +RAK GM++I +DPY P + A ++GV
Sbjct: 123 KRGEWDRKRFKGIELYGKTLGVIGLGRIGQQVVKRAKAFGMNIIGYDPYIPKEVAESMGV 182
Query: 241 DLV-SFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVIDEEALVR 299
+LV +E ADFI+LH+PLTP T ++ E MKK I+N ARGG+IDE+AL
Sbjct: 183 ELVDDINELCKRADFITLHVPLTPKTRHIIGREQIALMKKNAIIVNCARGGLIDEKALYE 242
Query: 300 ALDSGRVAQAALDVFTEEPPPADSKLVQHERVTVTPHLGASTMEAQEGVAIEIAEAVVGA 359
AL G++ AALDVF EE PP D+ L+ + V TPH GAST EAQ+ +AE +
Sbjct: 243 ALKEGKIRAAALDVFEEE-PPKDNPLLTLDNVIGTPHQGASTEEAQKAAGTIVAEQIKKV 301
Query: 360 LKGELAATAVNAPMVPAEVLTELKPFVELAEKLGRLAVQLVAGGSGVKTVKVSYASSRAP 419
L+GELA VN P +P E L +LKP++ LAE LG + +Q++ G V V++ Y+ A
Sbjct: 302 LRGELAENVVNMPNIPQEKLGKLKPYMLLAEMLGNIVMQVLDG--SVNRVELIYSGELAK 359
Query: 420 DDLDTRLLRAMITKGLIEPISDVFVNLVNADYTAKQRGLRLTEERILLDGSPESPLEFIQ 479
+ D L++ KGL+ PI +NLVNA AK R + + E
Sbjct: 360 EKTD--LIKRAFLKGLLSPILLAGINLVNAPIIAKNRNINVVES---------------- 401
Query: 480 VQIANVESKFASAI-----SESGEIKVEGRVKDGVPHLTKVGSFEVDVSLEGSIILCRQV 534
+ E K+ +AI S+ + + G + + P + +V +EV EG + + + +
Sbjct: 402 ---STSEEKYGNAIKITAESDKKKFSIVGAIINNKPVILEVDGYEVSFIPEGVLAIIKHI 458
Query: 535 DQPGMIGTVGSILGSENVNVSFMSVGRVAPRKHAVMAIGVDEQPRKETLKKIGDVPAIEE 594
D+PG IG V LG +N++ M VGR P +VM + +D +E ++KI ++P I++
Sbjct: 459 DRPGTIGRVCITLGDYGINIASMQVGRKEPGGESVMLLNLDHTVPEEVIEKIKEIPNIKD 518
Query: 595 FVFLKL 600
+ L
Sbjct: 519 VAVINL 524
|
Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (taxid: 243232) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 9 EC: 5 |
| >sp|P73821|SERA_SYNY3 D-3-phosphoglycerate dehydrogenase OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=serA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 370 bits (951), Expect = e-101, Method: Compositional matrix adjust.
Identities = 218/542 (40%), Positives = 325/542 (59%), Gaps = 21/542 (3%)
Query: 61 VLIAEKLGQAGLDLLNEFANVDCAYNLSPEELCTKISLCDALIVRSGTKVNRDVFESSAG 120
VL+++ + Q G+D+L + A VD LS E+ + DA+++RS TKV + ++ +
Sbjct: 32 VLVSDSIDQVGIDILKQVAQVDVKTGLSEAEIIDIVPEYDAIMLRSATKVTEKIIQAGS- 90
Query: 121 RLKVVGRAGVGIDNVDLAAATEFGCLVVNAPTANTVAAAEHGIALLAAMARNVAQADASV 180
+LK++GRAGVG+DN+D+ AAT G +VVN+P NT+AAAEH +A++ A+AR++ A+ SV
Sbjct: 91 QLKIIGRAGVGVDNIDVPAATRQGIVVVNSPEGNTIAAAEHALAMMMALARHIPDANKSV 150
Query: 181 KAGKWQRNKYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPADRARAIGV 240
K KW+R +++G + KTL V+G GK+GS VA AK +GM ++A+DP+ +RA IG
Sbjct: 151 KESKWERKQFIGTEVYKKTLGVVGLGKIGSHVAGVAKAMGMKLLAYDPFISQERADQIGC 210
Query: 241 DLVSFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVIDEEALVRA 300
LV D + ADFI+LH+P TP T+ ++N ET KMK RIIN +RGG+IDEEALV A
Sbjct: 211 TLVDLDLLFSEADFITLHIPKTPETANLINAETLAKMKPTARIINCSRGGIIDEEALVTA 270
Query: 301 LDSGRVAQAALDVFTEEPPPADSKLVQHERVTVTPHLGASTMEAQEGVAIEIAEAVVGAL 360
+++ ++ AALDVF +E P +S+L + V +TPHLGAST EAQ VA+++AE + L
Sbjct: 271 IETAQIGGAALDVFAQE-PLGESRLREFSNVILTPHLGASTEEAQVNVAVDVAEQIRDVL 329
Query: 361 KGELAATAVNAPMVPAEVLTELKPFVELAEKLGRLAVQLVAGGSGVKTVKVSYASSRAPD 420
G A +AVN P + +V+ +L+P+++LAE LG L QL AGG + + V A
Sbjct: 330 LGLPARSAVNIPGLTPDVMEKLRPYLKLAETLGTLVGQL-AGGR-IDRLTVCLQGDLAEY 387
Query: 421 DLDTRLLRAMITKGLIEPISDVFVNLVNADYTAKQRGLRLTEERILLDGSPESPLEFIQV 480
L+ A I KGL+ VN VNA AK+RG+R+ E + D S + +
Sbjct: 388 TNSQPLVVAAI-KGLLSQALRERVNYVNAAIEAKERGIRVIETK---DASVRDYSGSLHL 443
Query: 481 QIANV--ESKFASAISESGEIKVEGRVKDGVPHLTKVGSFEVDVSLEGSIILCRQVDQPG 538
+ E A+ +GEI++ T V F ++V ++ D PG
Sbjct: 444 KATGTMGEHSATGALLSNGEIRI-----------TDVDEFPINVPPNNYMLFTLHRDMPG 492
Query: 539 MIGTVGSILGSENVNVSFMSVGRVAPRKHAVMAIGVDEQPRKETLKKIGDVPAIEEFVFL 598
+IG +GS+LGS NVN++ M VGR R A+MA+ +D+ L +I V I + +
Sbjct: 493 IIGKIGSLLGSFNVNIASMQVGRKIVRGDAIMALSLDDPLPDGLLSEITKVAGIRDAYTV 552
Query: 599 KL 600
KL
Sbjct: 553 KL 554
|
Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 9 EC: 5 |
| >sp|O27051|SERA_METTH D-3-phosphoglycerate dehydrogenase OS=Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) GN=serA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 370 bits (951), Expect = e-101, Method: Compositional matrix adjust.
Identities = 212/544 (38%), Positives = 324/544 (59%), Gaps = 20/544 (3%)
Query: 57 SKPTVLIAEKLGQAGLDLLNEFANVDCAYNLSPEELCTKISLCDALIVRSGTKVNRDVFE 116
S+ VLIA+ + + G+ L E A V ++PEEL I DA++VRS TKV R+V E
Sbjct: 2 SRMKVLIADSINEKGISELEEVAEVVVNTTITPEELLDAIKDFDAIVVRSRTKVTREVIE 61
Query: 117 SSAGRLKVVGRAGVGIDNVDLAAATEFGCLVVNAPTANTVAAAEHGIALLAAMARNVAQA 176
+ A RLK++ RAGVG+DNVD+ AAT+ G +V+NAP + ++ AEH I L+ A+AR +A A
Sbjct: 62 A-APRLKIIARAGVGVDNVDVKAATDRGIMVINAPESTSITVAEHSIGLMLALARKIAIA 120
Query: 177 DASVKAGKWQRNKYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPADRAR 236
D SVK GKW++N+++G+ L GKTL ++G G++GS+V R K GM ++ +DPY + A
Sbjct: 121 DRSVKEGKWEKNRFMGIELNGKTLGIIGMGRIGSQVVVRTKAFGMDIMVYDPYISKEAAE 180
Query: 237 AIGVDLVSFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVIDEEA 296
+GV + + + +D +++H+PLTP T +++++ F MK I+N ARGG+IDE+A
Sbjct: 181 EMGVTVTDLETLLRESDIVTIHVPLTPETRHLISEDEFKLMKDTAFIVNCARGGIIDEDA 240
Query: 297 LVRALDSGRVAQAALDVFTEEPPPADSKLVQHERVTVTPHLGASTMEAQEGVAIEIAEAV 356
L RAL G +A AALDVF EEPP S L++ E V +TPH+GAST EAQ AI +A +
Sbjct: 241 LYRALKDGEIAGAALDVFEEEPPEG-SPLLELENVVLTPHIGASTSEAQRDAAIIVANEI 299
Query: 357 VGALKGELAATAVNAPMVPAEVLTELKPFVELAEKLGRLAVQLVAGGSGVKTVKVSYASS 416
+G +N P++ +E LKP++ELAEK+G + Q + G ++ + V+Y
Sbjct: 300 KTVFQGGAPRNVLNMPVMDSETYKSLKPYIELAEKMGAIIAQALPG--NIEKLDVTYCGE 357
Query: 417 RAPDDLDTRLLRAMITKGLIEPISDVFVNLVNADYTAKQRGLRLTEERILLDGSPESPLE 476
A D L R M+ + ++ PI VNL+NA AK+RG+ +TE R ES
Sbjct: 358 LAEMQFDI-LTRTML-QAILNPILTEPVNLINAPSIAKKRGIMVTEAR-----RSESD-G 409
Query: 477 FIQVQIANVESKFASAISESGEIKVEGRVKDGVPHLTKVGSFEVDVSLEGSIILCRQVDQ 536
+ + IA ES E+ IK P + + + VDV EG++I+ R D
Sbjct: 410 YRSIIIATAESDRGGFSVEATHIK--------EPTIIGINGYRVDVKPEGTMIIARYRDL 461
Query: 537 PGMIGTVGSILGSENVNVSFMSVGRVAPRKHAVMAIGVDEQPRKETLKKIGDVPAIEEFV 596
PG IG +G+ LG +N++ M VGR AVM + VD+ E ++++ + +++ V
Sbjct: 462 PGTIGAIGTKLGQHGINIATMQVGRKEIGGEAVMVLKVDQSVPAEVIEEVKKLDNVDDAV 521
Query: 597 FLKL 600
+++
Sbjct: 522 AIEI 525
|
Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) (taxid: 187420) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 9 EC: 5 |
| >sp|P35136|SERA_BACSU D-3-phosphoglycerate dehydrogenase OS=Bacillus subtilis (strain 168) GN=serA PE=3 SV=3 | Back alignment and function description |
|---|
Score = 365 bits (936), Expect = e-100, Method: Compositional matrix adjust.
Identities = 211/536 (39%), Positives = 314/536 (58%), Gaps = 27/536 (5%)
Query: 61 VLIAEKLGQAGLDLLNEFANVDCAY-NLSPEELCTKISLCDALIVRSGTKVNRDVFESSA 119
VL+++K+ GL L E ++ N++ E ++ DAL+VRS TKV D+F
Sbjct: 4 VLVSDKMSNDGLQPLIESDFIEIVQKNVADAE--DELHTFDALLVRSATKVTEDLFNKMT 61
Query: 120 GRLKVVGRAGVGIDNVDLAAATEFGCLVVNAPTANTVAAAEHGIALLAAMARNVAQADAS 179
LK+VGRAGVG+DN+D+ AT+ G +V+NAP NT++ AEH A+++++ R++ QA+ S
Sbjct: 62 S-LKIVGRAGVGVDNIDIDEATKHGVIVINAPNGNTISTAEHTFAMISSLMRHIPQANIS 120
Query: 180 VKAGKWQRNKYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPADRARAIG 239
VK+ +W R YVG L GKTL ++G G++GSE+A+RA+ GM V DP+ +RA+ IG
Sbjct: 121 VKSREWNRTAYVGSELYGKTLGIVGLGRIGSEIAQRARAFGMTVHVFDPFLTEERAKKIG 180
Query: 240 VDLVSFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVIDEEALVR 299
V+ +F+E + +AD I++H PLT T +LN ET K KKGVR+IN ARGG+IDE AL+
Sbjct: 181 VNSRTFEEVLESADIITVHTPLTKETKGLLNKETIAKTKKGVRLINCARGGIIDEAALLE 240
Query: 300 ALDSGRVAQAALDVFTEEPPPADSKLVQHERVTVTPHLGASTMEAQEGVAIEIAEAVVGA 359
AL++G VA AALDVF E PP D+KLV H V TPHLGAST EAQ VA +++E V+
Sbjct: 241 ALENGHVAGAALDVF-EVEPPVDNKLVDHPLVIATPHLGASTKEAQLNVAAQVSEEVLQF 299
Query: 360 LKGELAATAVNAPMVPAEVLTELKPFVELAEKLGRLAVQLVAGGSGVKTVKVSYASSRAP 419
KG +A+N P + + ++KP+ ++A K+G L Q + V+ V + Y + A
Sbjct: 300 AKGLPVMSAINLPAMTKDEFAKIKPYHQIAGKIGSLVSQCMK--EPVQDVAIQYEGTIAK 357
Query: 420 DDLDTRLLRAMITKGLIEPISDVFVNLVNADYTAKQRGLRLTEERILLDGSPESPLEFIQ 479
L+T + + G ++P D VN VNA AK+RG+ +E+ + S I
Sbjct: 358 --LETSFITKALLSGFLKPRVDSTVNEVNAGGVAKERGISFSEK---ISSSESGYDNCIS 412
Query: 480 VQIANVESKF---ASAISESGEIKVEGRVKDGVPHLTKVGSFEVDVSLEGSIILCRQVDQ 536
V++ S F A+ I GE VE + F +D G ++ + D
Sbjct: 413 VKVTGDRSTFTVTATYIPHFGERIVE------------INGFNIDFYPTGHLVYIQHQDT 460
Query: 537 PGMIGTVGSILGSENVNVSFMSVGRVAPRKHAVMAIGVDEQPRKETLKKIGDVPAI 592
G+IG VG ILG ++N++ M VGR A+M + D + +K++ +VP I
Sbjct: 461 TGVIGRVGRILGDNDINIATMQVGRKEKGGEAIMMLSFDRHLEDKIVKELTNVPDI 516
|
Bacillus subtilis (strain 168) (taxid: 224308) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 9 EC: 5 |
| >sp|O29445|SERA_ARCFU D-3-phosphoglycerate dehydrogenase OS=Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) GN=serA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 361 bits (926), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 213/544 (39%), Positives = 326/544 (59%), Gaps = 23/544 (4%)
Query: 61 VLIAEKLGQAGLDLLNEFA-NVDCAYNLSPEELCTKISLCDALIVRSGTKVNRDVFESSA 119
VL+AE + + +D + + V+ +S EEL ++ +A++VRS TKV+ +V ++ A
Sbjct: 3 VLVAEPISEEAIDYMRKNGLEVEVKTGMSREELIREVPKYEAIVVRSQTKVDAEVIQA-A 61
Query: 120 GRLKVVGRAGVGIDNVDLAAATEFGCLVVNAPTANTVAAAEHGIALLAAMARNVAQADAS 179
LK++GRAGVG+DN+D+ AAT+ G +VVNAP NT++ AEH IAL+ A AR + QAD S
Sbjct: 62 KNLKIIGRAGVGVDNIDINAATQRGIVVVNAPGGNTISTAEHAIALMLAAARKIPQADRS 121
Query: 180 VKAGKWQRNKYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPADRARAIG 239
VK GKW+R K++G+ L GKT V+G G+VG EVA+R K L M+V+A+DP+ +RA IG
Sbjct: 122 VKEGKWERKKFMGIELRGKTAGVIGLGRVGFEVAKRCKALEMNVLAYDPFVSKERAEQIG 181
Query: 240 VDLVSFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVIDEEALVR 299
V LV FD +A++D I++H+P T T ++ F KMK GV ++N ARGG++DE AL
Sbjct: 182 VKLVDFDTLLASSDVITVHVPRTKETIGLIGKGQFEKMKDGVIVVNAARGGIVDEAALYE 241
Query: 300 ALDSGRVAQAALDVFTEEPPPADSKLVQHERVTVTPHLGASTMEAQEGVAIEIAEAVVGA 359
A+ +G+VA AALDV+ +EPP D+ L++ + V TPH+ AST EAQ V + IAE +V
Sbjct: 242 AIKAGKVAAAALDVYEKEPPSPDNPLLKLDNVVTTPHIAASTREAQLNVGMIIAEDIVNM 301
Query: 360 LKGELAATAVNAPMVPAEVLTELKPFVELAEKLGRLA-VQLVAGGSGVKTVKVSYASSRA 418
KG AVN P + + PF+ LAEK+G++A V+L G ++ VKV+ + A
Sbjct: 302 AKGLPVRNAVNLPSIEPSDFEFMMPFLTLAEKMGKIASVRL---GGAIRKVKVTCSGKLA 358
Query: 419 PDDLDTRLLRAMITKGLIEPISDVFVNLVNADYTAKQRGLRLTEERILLDGSPESPLEFI 478
+T + + KGL EPI +NLV+A A +RG+ + E ++ ES LE +
Sbjct: 359 TK--NTEFVTRALLKGLFEPILSNEINLVSAKPVAVERGITIEESKVESVEHYESLLE-V 415
Query: 479 QVQIANVESKFASAISESGEIKVEGRVKDGVPHLTKVGSFEVDVSLEGSIILCRQVDQPG 538
V+ S E+ + G + K+ + V+ +G I+ D+PG
Sbjct: 416 WVE------------SNGKEMYLAGTCFGNEYRILKIDVYNVNFVPKGHYIISLHEDKPG 463
Query: 539 MIGTVGSILGSENVNVSFMSVGRVA--PRKHAVMAIGVDEQPRKETLKKIGDVPAIEEFV 596
+IG VG++ G N+N++ M VGR P +M + VD+ P E L+++ + I +
Sbjct: 464 VIGRVGTLFGRNNINIAGMIVGRSGDKPGGIQLMLLLVDDPPTPEVLEEMTKLDGIIDAT 523
Query: 597 FLKL 600
+++L
Sbjct: 524 YVEL 527
|
Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) (taxid: 224325) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 9 EC: 5 |
| >sp|Q60HD7|SERA_MACFA D-3-phosphoglycerate dehydrogenase OS=Macaca fascicularis GN=PHGDH PE=2 SV=4 | Back alignment and function description |
|---|
Score = 306 bits (783), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 177/391 (45%), Positives = 231/391 (59%), Gaps = 10/391 (2%)
Query: 86 NLSPEELCTKISLCDALIVRSGTKVNRDVFESSAGRLKVVGRAGVGIDNVDLAAATEFGC 145
NLS EEL ++ C+ LIVRS TKV DV ++A +L+VVGRAG G+DNVDL AAT G
Sbjct: 35 NLSKEELIAELQDCEGLIVRSATKVTADVI-NAAEKLQVVGRAGTGVDNVDLEAATRKGV 93
Query: 146 LVVNAPTANTVAAAEHGIALLAAMARNVAQADASVKAGKWQRNKYVGVSLVGKTLAVLGF 205
LV+N P N+++AAE ++ +AR + QA AS+K GKW+R K++G L GKTL +LG
Sbjct: 94 LVMNTPNGNSLSAAELTCGMIMCLARQIPQATASMKDGKWERKKFMGTELNGKTLGILGL 153
Query: 206 GKVGSEVARRAKGLGMHVIAHDPYAPADRARAIGVDLVSFDEAIATADFISLHMPLTPAT 265
G++G EVA R + GM I +DP + + + GV + +E DFI++H PL P+T
Sbjct: 154 GRIGREVATRMQSFGMKTIGYDPIISPEVSASFGVQQLPLEEIWPLCDFITVHTPLLPST 213
Query: 266 SKVLNDETFGKMKKGVRIINVARGGVIDEEALVRALDSGRVAQAALDVFTEEPPPADSKL 325
+ +LND TF + KKGVR++N ARGG++DE AL+RAL SG+ A AALDVFTEE PP D L
Sbjct: 214 TGLLNDNTFAQCKKGVRVVNCARGGIVDEGALLRALQSGQCAGAALDVFTEE-PPRDRAL 272
Query: 326 VQHERVTVTPHLGASTMEAQEGVAIEIAEAVVGALKGELAATAVNAPMVPAEVLTELKPF 385
V HE V PHLGAST EAQ EIA V +KG+ A VNA + + KP+
Sbjct: 273 VDHENVISCPHLGASTKEAQSRCGEEIAVQFVDMVKGKSLAGVVNAQALTSAFSPHTKPW 332
Query: 386 VELAEKLGRLAVQLVAGGSGVKTVKVSYASSRAPDDLDTRLLRAMITKGLIEPISDVFVN 445
+ LAE LG L G V S + + L A+I L E VN
Sbjct: 333 IGLAEALGTLMRAWAGSPKGTIQVITQGTSLKNAGNC---LSPAVIVGLLKEASKQADVN 389
Query: 446 LVNADYTAKQRGLRLTEERILLDGSPESPLE 476
LVNA K+ GL +T SP +P E
Sbjct: 390 LVNAKLLVKEAGLDVTTSH-----SPAAPGE 415
|
Macaca fascicularis (taxid: 9541) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 9 EC: 5 |
| >sp|O08651|SERA_RAT D-3-phosphoglycerate dehydrogenase OS=Rattus norvegicus GN=Phgdh PE=1 SV=3 | Back alignment and function description |
|---|
Score = 305 bits (782), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 174/376 (46%), Positives = 225/376 (59%), Gaps = 5/376 (1%)
Query: 86 NLSPEELCTKISLCDALIVRSGTKVNRDVFESSAGRLKVVGRAGVGIDNVDLAAATEFGC 145
NLS EEL ++ C+ LIVRS TKV DV ++A +L+VVGRAG G+DNVDL AAT G
Sbjct: 35 NLSKEELIAELQDCEGLIVRSATKVTADVI-NAAEKLQVVGRAGTGVDNVDLEAATRKGV 93
Query: 146 LVVNAPTANTVAAAEHGIALLAAMARNVAQADASVKAGKWQRNKYVGVSLVGKTLAVLGF 205
LV+N P N+++AAE +L +AR + QA AS+K GKW R K++G L GKTL +LG
Sbjct: 94 LVMNTPNGNSLSAAELTCGMLMCLARQIPQATASMKDGKWDRKKFMGTELNGKTLGILGL 153
Query: 206 GKVGSEVARRAKGLGMHVIAHDPYAPADRARAIGVDLVSFDEAIATADFISLHMPLTPAT 265
G++G EVA R + GM + +DP + A + GV + +E DFI++H PL P+T
Sbjct: 154 GRIGREVAARMQAFGMKTVGYDPIISPEVAASFGVQQLPLEEIWPLCDFITVHTPLLPST 213
Query: 266 SKVLNDETFGKMKKGVRIINVARGGVIDEEALVRALDSGRVAQAALDVFTEEPPPADSKL 325
+ +LND TF + KKGVR++N ARGG++DE AL+RAL SG+ A AALDVFTEE PP D L
Sbjct: 214 TGLLNDSTFAQCKKGVRVVNCARGGIVDEGALLRALQSGQCAGAALDVFTEE-PPRDRAL 272
Query: 326 VQHERVTVTPHLGASTMEAQEGVAIEIAEAVVGALKGELAATAVNAPMVPAEVLTELKPF 385
V HE V PHLGAST EAQ EIA V +KG+ VNA + + KP+
Sbjct: 273 VDHENVISCPHLGASTKEAQSRCGEEIAVQFVDMVKGKSLTGVVNAQALTSAFSPHTKPW 332
Query: 386 VELAEKLGRLAVQLVAGGSGVKTVKVSYASSRAPDDLDTRLLRAMITKGLIEPISDVFVN 445
+ LAE LG L G V S + + T L A+I L E VN
Sbjct: 333 IGLAEALGTLMHAWAGSPKGTIQVVTQGTSLK---NAGTCLSPAVIVGLLREASKQADVN 389
Query: 446 LVNADYTAKQRGLRLT 461
LVNA K+ GL +T
Sbjct: 390 LVNAKLLVKEAGLNVT 405
|
Rattus norvegicus (taxid: 10116) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 9 EC: 5 |
| >sp|O43175|SERA_HUMAN D-3-phosphoglycerate dehydrogenase OS=Homo sapiens GN=PHGDH PE=1 SV=4 | Back alignment and function description |
|---|
Score = 305 bits (782), Expect = 6e-82, Method: Compositional matrix adjust.
Identities = 176/391 (45%), Positives = 230/391 (58%), Gaps = 10/391 (2%)
Query: 86 NLSPEELCTKISLCDALIVRSGTKVNRDVFESSAGRLKVVGRAGVGIDNVDLAAATEFGC 145
NLS EEL ++ C+ LIVRS TKV DV ++A +L+VVGRAG G+DNVDL AAT G
Sbjct: 35 NLSKEELIAELQDCEGLIVRSATKVTADVI-NAAEKLQVVGRAGTGVDNVDLEAATRKGI 93
Query: 146 LVVNAPTANTVAAAEHGIALLAAMARNVAQADASVKAGKWQRNKYVGVSLVGKTLAVLGF 205
LV+N P N+++AAE ++ +AR + QA AS+K GKW+R K++G L GKTL +LG
Sbjct: 94 LVMNTPNGNSLSAAELTCGMIMCLARQIPQATASMKDGKWERKKFMGTELNGKTLGILGL 153
Query: 206 GKVGSEVARRAKGLGMHVIAHDPYAPADRARAIGVDLVSFDEAIATADFISLHMPLTPAT 265
G++G EVA R + GM I +DP + + + GV + +E DFI++H PL P+T
Sbjct: 154 GRIGREVATRMQSFGMKTIGYDPIISPEVSASFGVQQLPLEEIWPLCDFITVHTPLLPST 213
Query: 266 SKVLNDETFGKMKKGVRIINVARGGVIDEEALVRALDSGRVAQAALDVFTEEPPPADSKL 325
+ +LND TF + KKGVR++N ARGG++DE AL+RAL SG+ A AALDVFTEE PP D L
Sbjct: 214 TGLLNDNTFAQCKKGVRVVNCARGGIVDEGALLRALQSGQCAGAALDVFTEE-PPRDRAL 272
Query: 326 VQHERVTVTPHLGASTMEAQEGVAIEIAEAVVGALKGELAATAVNAPMVPAEVLTELKPF 385
V HE V PHLGAST EAQ EIA V +KG+ VNA + + KP+
Sbjct: 273 VDHENVISCPHLGASTKEAQSRCGEEIAVQFVDMVKGKSLTGVVNAQALTSAFSPHTKPW 332
Query: 386 VELAEKLGRLAVQLVAGGSGVKTVKVSYASSRAPDDLDTRLLRAMITKGLIEPISDVFVN 445
+ LAE LG L G V S + + L A+I L E VN
Sbjct: 333 IGLAEALGTLMRAWAGSPKGTIQVITQGTSLKNAGNC---LSPAVIVGLLKEASKQADVN 389
Query: 446 LVNADYTAKQRGLRLTEERILLDGSPESPLE 476
LVNA K+ GL +T SP +P E
Sbjct: 390 LVNAKLLVKEAGLNVTTSH-----SPAAPGE 415
|
Homo sapiens (taxid: 9606) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 9 EC: 5 |
| >sp|A5A6P1|SERA_PANTR D-3-phosphoglycerate dehydrogenase OS=Pan troglodytes GN=PHGDH PE=2 SV=1 | Back alignment and function description |
|---|
Score = 305 bits (780), Expect = 9e-82, Method: Compositional matrix adjust.
Identities = 176/391 (45%), Positives = 230/391 (58%), Gaps = 10/391 (2%)
Query: 86 NLSPEELCTKISLCDALIVRSGTKVNRDVFESSAGRLKVVGRAGVGIDNVDLAAATEFGC 145
NLS EEL ++ C+ LIVRS TKV DV ++A +L+VVGRAG G+DNVDL AAT G
Sbjct: 35 NLSKEELIAELQDCEGLIVRSATKVTADVI-NAAEKLQVVGRAGTGVDNVDLEAATRKGI 93
Query: 146 LVVNAPTANTVAAAEHGIALLAAMARNVAQADASVKAGKWQRNKYVGVSLVGKTLAVLGF 205
LV+N P N+++AAE ++ +AR + QA AS+K GKW+R K++G L GKTL +LG
Sbjct: 94 LVMNTPNGNSLSAAELTCGMIMCLARQIPQATASMKDGKWERKKFMGTELNGKTLGILGL 153
Query: 206 GKVGSEVARRAKGLGMHVIAHDPYAPADRARAIGVDLVSFDEAIATADFISLHMPLTPAT 265
G++G EVA R + GM I +DP + + + GV + +E DFI++H PL P+T
Sbjct: 154 GRIGREVATRMQSFGMKTIGYDPIISPEVSASFGVQQLPLEEIWPLCDFITVHTPLLPST 213
Query: 266 SKVLNDETFGKMKKGVRIINVARGGVIDEEALVRALDSGRVAQAALDVFTEEPPPADSKL 325
+ +LND TF + KKGVR++N ARGG++DE AL+RAL SG+ A AALDVFTEE PP D L
Sbjct: 214 TGLLNDNTFAQCKKGVRVVNCARGGIVDEGALLRALQSGQCAGAALDVFTEE-PPRDRAL 272
Query: 326 VQHERVTVTPHLGASTMEAQEGVAIEIAEAVVGALKGELAATAVNAPMVPAEVLTELKPF 385
V HE V PHLGAST EAQ EIA V +KG+ VNA + + KP+
Sbjct: 273 VDHENVISCPHLGASTKEAQSRCGEEIAVQFVDMVKGKSLTGVVNAQALTSAFSPHTKPW 332
Query: 386 VELAEKLGRLAVQLVAGGSGVKTVKVSYASSRAPDDLDTRLLRAMITKGLIEPISDVFVN 445
+ LAE LG L G V S + + L A+I L E VN
Sbjct: 333 IGLAEALGTLMRAWAGSPKGTIQVITQGTSLKNAGNC---LSPAVIVGLLKEASKQADVN 389
Query: 446 LVNADYTAKQRGLRLTEERILLDGSPESPLE 476
LVNA K+ GL +T SP +P E
Sbjct: 390 LVNAKLLVKEAGLNVTTSH-----SPAAPGE 415
|
Pan troglodytes (taxid: 9598) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 9 EC: 5 |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 600 | ||||||
| 211906486 | 602 | phosphoglycerate dehydrogenase [Gossypiu | 0.985 | 0.981 | 0.886 | 0.0 | |
| 255555301 | 596 | d-3-phosphoglycerate dehydrogenase, puta | 0.991 | 0.998 | 0.851 | 0.0 | |
| 449445906 | 599 | PREDICTED: d-3-phosphoglycerate dehydrog | 0.945 | 0.946 | 0.893 | 0.0 | |
| 356536156 | 594 | PREDICTED: d-3-phosphoglycerate dehydrog | 0.986 | 0.996 | 0.860 | 0.0 | |
| 225428898 | 595 | PREDICTED: d-3-phosphoglycerate dehydrog | 0.955 | 0.963 | 0.883 | 0.0 | |
| 224060560 | 597 | predicted protein [Populus trichocarpa] | 0.96 | 0.964 | 0.865 | 0.0 | |
| 224105607 | 543 | predicted protein [Populus trichocarpa] | 0.905 | 1.0 | 0.909 | 0.0 | |
| 356574282 | 595 | PREDICTED: d-3-phosphoglycerate dehydrog | 0.943 | 0.951 | 0.870 | 0.0 | |
| 297798490 | 603 | hypothetical protein ARALYDRAFT_491252 [ | 0.971 | 0.966 | 0.838 | 0.0 | |
| 15235282 | 603 | D-3-phosphoglycerate dehydrogenase [Arab | 0.968 | 0.963 | 0.827 | 0.0 |
| >gi|211906486|gb|ACJ11736.1| phosphoglycerate dehydrogenase [Gossypium hirsutum] | Back alignment and taxonomy information |
|---|
Score = 1060 bits (2741), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 532/600 (88%), Positives = 560/600 (93%), Gaps = 9/600 (1%)
Query: 10 ASLRQPSLK---LSLSSKHSLSPLFSVSF----NHKRAPP--RLVIIASAAADGISSKPT 60
ASL+ P+LK +LSSK L FS +F R+ P R +I +A++ S+KPT
Sbjct: 3 ASLKTPTLKTPSFALSSKPRLPSAFSAAFPNTARFSRSQPQRRRFLIVTASSSSFSNKPT 62
Query: 61 VLIAEKLGQAGLDLLNEFANVDCAYNLSPEELCTKISLCDALIVRSGTKVNRDVFESSAG 120
VL+AEKLG+AGL LL EFANVDC+YNLSPEELCTKISLCDALIVRSGTKVNR+VFESS G
Sbjct: 63 VLVAEKLGEAGLTLLKEFANVDCSYNLSPEELCTKISLCDALIVRSGTKVNREVFESSGG 122
Query: 121 RLKVVGRAGVGIDNVDLAAATEFGCLVVNAPTANTVAAAEHGIALLAAMARNVAQADASV 180
RLKVVGRAGVGIDNVDL+AATE GCLVVNAPTANTVAAAEHGIALLAAMARNVAQADASV
Sbjct: 123 RLKVVGRAGVGIDNVDLSAATEHGCLVVNAPTANTVAAAEHGIALLAAMARNVAQADASV 182
Query: 181 KAGKWQRNKYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPADRARAIGV 240
KAGKWQRNKYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPADRARAIGV
Sbjct: 183 KAGKWQRNKYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPADRARAIGV 242
Query: 241 DLVSFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVIDEEALVRA 300
+LVSFDEAIATADFISLHMPLTPAT+K+LNDETF KMKKGVRI+NVARGGVIDEEALVRA
Sbjct: 243 ELVSFDEAIATADFISLHMPLTPATNKMLNDETFAKMKKGVRIVNVARGGVIDEEALVRA 302
Query: 301 LDSGRVAQAALDVFTEEPPPADSKLVQHERVTVTPHLGASTMEAQEGVAIEIAEAVVGAL 360
LD+G VAQAALDVF+EEPP DSKLVQHERVTVTPHLGASTMEAQEGVAIEIAEAVVGAL
Sbjct: 303 LDAGTVAQAALDVFSEEPPKQDSKLVQHERVTVTPHLGASTMEAQEGVAIEIAEAVVGAL 362
Query: 361 KGELAATAVNAPMVPAEVLTELKPFVELAEKLGRLAVQLVAGGSGVKTVKVSYASSRAPD 420
KGELAATAVNAPMVPAEVLTELKP+VELAEKLGRL VQLVAGGSGVKTVKVSYASSRAPD
Sbjct: 363 KGELAATAVNAPMVPAEVLTELKPYVELAEKLGRLGVQLVAGGSGVKTVKVSYASSRAPD 422
Query: 421 DLDTRLLRAMITKGLIEPISDVFVNLVNADYTAKQRGLRLTEERILLDGSPESPLEFIQV 480
DLDTRLLRAMITKG+IEPIS VFVNLVNADYTAKQRGLR+TEERILLDGSPESPLE IQV
Sbjct: 423 DLDTRLLRAMITKGIIEPISSVFVNLVNADYTAKQRGLRITEERILLDGSPESPLESIQV 482
Query: 481 QIANVESKFASAISESGEIKVEGRVKDGVPHLTKVGSFEVDVSLEGSIILCRQVDQPGMI 540
QIANVESKFASA+SESGEIKVEGRVKDG+PHLTKVGSFEVDVSLEGSIILCRQVDQPGMI
Sbjct: 483 QIANVESKFASAMSESGEIKVEGRVKDGIPHLTKVGSFEVDVSLEGSIILCRQVDQPGMI 542
Query: 541 GTVGSILGSENVNVSFMSVGRVAPRKHAVMAIGVDEQPRKETLKKIGDVPAIEEFVFLKL 600
GTVGSILG ENVNVSFMSVGRVAPRKHAVMAIGVDEQP KETLK+IG+VPAIEEFVFLKL
Sbjct: 543 GTVGSILGEENVNVSFMSVGRVAPRKHAVMAIGVDEQPSKETLKRIGEVPAIEEFVFLKL 602
|
Source: Gossypium hirsutum Species: Gossypium hirsutum Genus: Gossypium Family: Malvaceae Order: Malvales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255555301|ref|XP_002518687.1| d-3-phosphoglycerate dehydrogenase, putative [Ricinus communis] gi|223542068|gb|EEF43612.1| d-3-phosphoglycerate dehydrogenase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1033 bits (2670), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 512/601 (85%), Positives = 553/601 (92%), Gaps = 6/601 (0%)
Query: 1 MATSAASCAASLRQPSLKLSLSSK-HSLSPLFSVSFNHKRAPPRLVIIASAAADGISSKP 59
MA S + ++ + S++SK H LS FSV + R R +++ ++ + +KP
Sbjct: 1 MAISTTNLRTTVNRNLSSFSVASKTHKLST-FSVPLRNSRRNSRFIVLTAS----LDAKP 55
Query: 60 TVLIAEKLGQAGLDLLNEFANVDCAYNLSPEELCTKISLCDALIVRSGTKVNRDVFESSA 119
TVL+ EKLG+AGL+LL EFANVDC+YNLSPEELCTKISLCDALIVRSGTKVNR+VFESS
Sbjct: 56 TVLVTEKLGEAGLNLLKEFANVDCSYNLSPEELCTKISLCDALIVRSGTKVNREVFESSG 115
Query: 120 GRLKVVGRAGVGIDNVDLAAATEFGCLVVNAPTANTVAAAEHGIALLAAMARNVAQADAS 179
GRLKVVGRAGVGIDNVDL+AATE GCLVVNAPTANTVAAAEHGIALLAAMARNVAQADAS
Sbjct: 116 GRLKVVGRAGVGIDNVDLSAATEHGCLVVNAPTANTVAAAEHGIALLAAMARNVAQADAS 175
Query: 180 VKAGKWQRNKYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPADRARAIG 239
VKAGKWQRNKYVGVSLVGKTLAV+GFGKVGSEVARRAKGLGMHVIAHDPYAPADRARAIG
Sbjct: 176 VKAGKWQRNKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMHVIAHDPYAPADRARAIG 235
Query: 240 VDLVSFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVIDEEALVR 299
V+LVSFDEAI TADFISLHMPLTPATSK+LNDE F KMKKGVRI+NVARGGVIDE+ALVR
Sbjct: 236 VELVSFDEAIGTADFISLHMPLTPATSKILNDENFAKMKKGVRIVNVARGGVIDEDALVR 295
Query: 300 ALDSGRVAQAALDVFTEEPPPADSKLVQHERVTVTPHLGASTMEAQEGVAIEIAEAVVGA 359
A+D+G VAQAALDVFTEEPP DSKLVQHE+VTVTPHLGAST+EAQEGVAIEIAEAVVGA
Sbjct: 296 AIDAGIVAQAALDVFTEEPPAKDSKLVQHEKVTVTPHLGASTVEAQEGVAIEIAEAVVGA 355
Query: 360 LKGELAATAVNAPMVPAEVLTELKPFVELAEKLGRLAVQLVAGGSGVKTVKVSYASSRAP 419
LKGELAATAVNAPMVPAEVLTELKPFV LAEKLGRLAVQLVAGGSGVKTVKV+Y S+RAP
Sbjct: 356 LKGELAATAVNAPMVPAEVLTELKPFVMLAEKLGRLAVQLVAGGSGVKTVKVTYGSTRAP 415
Query: 420 DDLDTRLLRAMITKGLIEPISDVFVNLVNADYTAKQRGLRLTEERILLDGSPESPLEFIQ 479
DDLDTRLLRAMITKGLIEPIS VFVNLVNAD+TAKQRGLR+ EER+ LDGSPESPLEFIQ
Sbjct: 416 DDLDTRLLRAMITKGLIEPISSVFVNLVNADFTAKQRGLRIAEERVTLDGSPESPLEFIQ 475
Query: 480 VQIANVESKFASAISESGEIKVEGRVKDGVPHLTKVGSFEVDVSLEGSIILCRQVDQPGM 539
VQIANVESKFASAISESGEIKVEG+VKDG+PHLTKVGSFEVDVSLEGSIILCRQVDQPGM
Sbjct: 476 VQIANVESKFASAISESGEIKVEGKVKDGIPHLTKVGSFEVDVSLEGSIILCRQVDQPGM 535
Query: 540 IGTVGSILGSENVNVSFMSVGRVAPRKHAVMAIGVDEQPRKETLKKIGDVPAIEEFVFLK 599
IG VGSILG ENVNVSFMSVGR+APRK AVMAIGVD+QP+KE+LKKIGD+PAIEEFVFLK
Sbjct: 536 IGKVGSILGEENVNVSFMSVGRIAPRKQAVMAIGVDDQPKKESLKKIGDIPAIEEFVFLK 595
Query: 600 L 600
L
Sbjct: 596 L 596
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449445906|ref|XP_004140713.1| PREDICTED: d-3-phosphoglycerate dehydrogenase, chloroplastic-like [Cucumis sativus] gi|449501685|ref|XP_004161437.1| PREDICTED: d-3-phosphoglycerate dehydrogenase, chloroplastic-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1031 bits (2667), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 510/571 (89%), Positives = 542/571 (94%), Gaps = 4/571 (0%)
Query: 31 FSVSFNHKR-APPRLVIIASAAADGISSKPTVLIAEKLGQAGLDLLNEFANVDCAYNLSP 89
FSV+ + A PR V++ SA+ +++KPTVL+AEKLG+AGLDLL EFANVDC+YNLSP
Sbjct: 32 FSVNLRPRSVAAPRFVVLVSAS---LNAKPTVLVAEKLGEAGLDLLKEFANVDCSYNLSP 88
Query: 90 EELCTKISLCDALIVRSGTKVNRDVFESSAGRLKVVGRAGVGIDNVDLAAATEFGCLVVN 149
EELCTKISLCDALIVRSGTKV+R+VFESS GRLKVVGRAGVGIDNVDLAAATE GCLVVN
Sbjct: 89 EELCTKISLCDALIVRSGTKVSREVFESSGGRLKVVGRAGVGIDNVDLAAATEHGCLVVN 148
Query: 150 APTANTVAAAEHGIALLAAMARNVAQADASVKAGKWQRNKYVGVSLVGKTLAVLGFGKVG 209
APTANTVAAAEHGIALL AMARNVAQADASVKAGKWQRNKYVGVSLVGKTLAV+GFGKVG
Sbjct: 149 APTANTVAAAEHGIALLTAMARNVAQADASVKAGKWQRNKYVGVSLVGKTLAVMGFGKVG 208
Query: 210 SEVARRAKGLGMHVIAHDPYAPADRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVL 269
SEVARRAKGLGMHVIAHDPYAPADRARAIGV+LV F+EAIATADFISLHMPLTPATSK+L
Sbjct: 209 SEVARRAKGLGMHVIAHDPYAPADRARAIGVELVGFEEAIATADFISLHMPLTPATSKIL 268
Query: 270 NDETFGKMKKGVRIINVARGGVIDEEALVRALDSGRVAQAALDVFTEEPPPADSKLVQHE 329
NDE F KMKKGVRI+NVARGGVIDEEALVRALD+G VAQAALDVFT EPPP DSKL+QHE
Sbjct: 269 NDENFAKMKKGVRIVNVARGGVIDEEALVRALDAGIVAQAALDVFTVEPPPKDSKLIQHE 328
Query: 330 RVTVTPHLGASTMEAQEGVAIEIAEAVVGALKGELAATAVNAPMVPAEVLTELKPFVELA 389
VTVTPHLGASTMEAQEGVA+EIAEAVVGALKGELAATAVNAPMVPAEVLTELKPFVELA
Sbjct: 329 NVTVTPHLGASTMEAQEGVAVEIAEAVVGALKGELAATAVNAPMVPAEVLTELKPFVELA 388
Query: 390 EKLGRLAVQLVAGGSGVKTVKVSYASSRAPDDLDTRLLRAMITKGLIEPISDVFVNLVNA 449
EKLGRLAVQLVAGGSGVKTVKV+YASSRAPDDLDTRLLRAMITKGLIEPIS VFVNLVNA
Sbjct: 389 EKLGRLAVQLVAGGSGVKTVKVTYASSRAPDDLDTRLLRAMITKGLIEPISSVFVNLVNA 448
Query: 450 DYTAKQRGLRLTEERILLDGSPESPLEFIQVQIANVESKFASAISESGEIKVEGRVKDGV 509
D+TAKQRGLR+TEER+++DGSPE PLE+IQVQIANVESKFASAIS+SGEIKVEG VKDGV
Sbjct: 449 DFTAKQRGLRITEERVIIDGSPEKPLEYIQVQIANVESKFASAISDSGEIKVEGLVKDGV 508
Query: 510 PHLTKVGSFEVDVSLEGSIILCRQVDQPGMIGTVGSILGSENVNVSFMSVGRVAPRKHAV 569
PHLTKVGSFEVDVSLEGSIILCRQVDQPGMIG VGSILG ENVNVSFMSVGR+APRK AV
Sbjct: 509 PHLTKVGSFEVDVSLEGSIILCRQVDQPGMIGKVGSILGEENVNVSFMSVGRIAPRKQAV 568
Query: 570 MAIGVDEQPRKETLKKIGDVPAIEEFVFLKL 600
MAIGVDEQP KE+LK+IGDVPAIEEFVFLKL
Sbjct: 569 MAIGVDEQPSKESLKRIGDVPAIEEFVFLKL 599
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356536156|ref|XP_003536605.1| PREDICTED: d-3-phosphoglycerate dehydrogenase, chloroplastic-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1029 bits (2660), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 514/597 (86%), Positives = 556/597 (93%), Gaps = 5/597 (0%)
Query: 5 AASCAASLRQPSLKLSLSSKHSLSPLFSVSFN-HKRAPPRLVIIASAAADGISSKPTVLI 63
A + + +LR S LSLSSK LS FSVS +RA LV++ SA G+ +KPTVL+
Sbjct: 2 ATATSQTLRFQSPSLSLSSKIPLSA-FSVSLRPQRRASRHLVLVVSA---GLDAKPTVLV 57
Query: 64 AEKLGQAGLDLLNEFANVDCAYNLSPEELCTKISLCDALIVRSGTKVNRDVFESSAGRLK 123
AEKLG AGL LL +FANVDC+YNLS EELCTKISLCDALIVRSGTKV+R+VFESSAGRLK
Sbjct: 58 AEKLGDAGLKLLKDFANVDCSYNLSTEELCTKISLCDALIVRSGTKVSREVFESSAGRLK 117
Query: 124 VVGRAGVGIDNVDLAAATEFGCLVVNAPTANTVAAAEHGIALLAAMARNVAQADASVKAG 183
VVGRAGVGIDNVDLAAATE GCLVVNAPTANTVAAAEHGIALLAAMARNVAQADASVKAG
Sbjct: 118 VVGRAGVGIDNVDLAAATEHGCLVVNAPTANTVAAAEHGIALLAAMARNVAQADASVKAG 177
Query: 184 KWQRNKYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPADRARAIGVDLV 243
KWQRNKYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGM+VIAHDPYAPADRARAIGV+LV
Sbjct: 178 KWQRNKYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMNVIAHDPYAPADRARAIGVELV 237
Query: 244 SFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVIDEEALVRALDS 303
+FDEAIATADFISLHMPLT ATSK+LNDETF KMKKGVRI+NVARGGVIDE+ALVRALDS
Sbjct: 238 NFDEAIATADFISLHMPLTAATSKILNDETFAKMKKGVRIVNVARGGVIDEDALVRALDS 297
Query: 304 GRVAQAALDVFTEEPPPADSKLVQHERVTVTPHLGASTMEAQEGVAIEIAEAVVGALKGE 363
G VAQAALDVFTEEPPP DSKL+ HE VT TPHLGASTMEAQEGVAIEIAEAVVGALKGE
Sbjct: 298 GIVAQAALDVFTEEPPPKDSKLILHELVTATPHLGASTMEAQEGVAIEIAEAVVGALKGE 357
Query: 364 LAATAVNAPMVPAEVLTELKPFVELAEKLGRLAVQLVAGGSGVKTVKVSYASSRAPDDLD 423
LAATAVNAPMVP+EVLTELKPF++LAEKLGRLAVQLVAGGSGVKTVKV+YA+SR PDDLD
Sbjct: 358 LAATAVNAPMVPSEVLTELKPFIDLAEKLGRLAVQLVAGGSGVKTVKVTYATSRGPDDLD 417
Query: 424 TRLLRAMITKGLIEPISDVFVNLVNADYTAKQRGLRLTEERILLDGSPESPLEFIQVQIA 483
TRLLRAMITKGLIEPIS VFVNLVNAD+TAKQRG+R+TEE+++LDGSPE+PLEF+QVQIA
Sbjct: 418 TRLLRAMITKGLIEPISSVFVNLVNADFTAKQRGIRITEEKVILDGSPENPLEFVQVQIA 477
Query: 484 NVESKFASAISESGEIKVEGRVKDGVPHLTKVGSFEVDVSLEGSIILCRQVDQPGMIGTV 543
NVES+FASAIS+SGEIKVEGRVKDG+PHLTKVGSF+VDVSLEGSIILCRQVDQPGMIG V
Sbjct: 478 NVESRFASAISDSGEIKVEGRVKDGIPHLTKVGSFDVDVSLEGSIILCRQVDQPGMIGKV 537
Query: 544 GSILGSENVNVSFMSVGRVAPRKHAVMAIGVDEQPRKETLKKIGDVPAIEEFVFLKL 600
GS+LG ENVNVSFMSVGR+APRK AVMAIGVDEQP KE+LKKIGD+PA+EEFVFLKL
Sbjct: 538 GSVLGEENVNVSFMSVGRIAPRKQAVMAIGVDEQPSKESLKKIGDIPAVEEFVFLKL 594
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225428898|ref|XP_002285358.1| PREDICTED: d-3-phosphoglycerate dehydrogenase, chloroplastic-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1016 bits (2628), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 510/577 (88%), Positives = 543/577 (94%), Gaps = 4/577 (0%)
Query: 24 KHSLSPLFSVSFNHKRAPPRLVIIASAAADGISSKPTVLIAEKLGQAGLDLLNEFANVDC 83
K SL+P FSV+ R LV++A+A + +KPTVL+AEKLG AGLDLL +FANVDC
Sbjct: 23 KLSLAPAFSVAVVVPRRRRSLVVVATA----LDAKPTVLVAEKLGAAGLDLLKDFANVDC 78
Query: 84 AYNLSPEELCTKISLCDALIVRSGTKVNRDVFESSAGRLKVVGRAGVGIDNVDLAAATEF 143
AYNLSPEELCTKISLCDALIVRSGTKV+R+VFE+S+GRLKVVGRAGVGIDNVDLAAATE
Sbjct: 79 AYNLSPEELCTKISLCDALIVRSGTKVSREVFEASSGRLKVVGRAGVGIDNVDLAAATEH 138
Query: 144 GCLVVNAPTANTVAAAEHGIALLAAMARNVAQADASVKAGKWQRNKYVGVSLVGKTLAVL 203
GCLVVNAPTANTVAAAEHGIALL AMARNVAQADASVK+GKWQRNKYVGVSLVGKTLAV+
Sbjct: 139 GCLVVNAPTANTVAAAEHGIALLTAMARNVAQADASVKSGKWQRNKYVGVSLVGKTLAVM 198
Query: 204 GFGKVGSEVARRAKGLGMHVIAHDPYAPADRARAIGVDLVSFDEAIATADFISLHMPLTP 263
GFGKVGSEV RRAKGLGMHVIAHDPYA ADRARAIGV+LV FDEAI+TADFISLHMPLTP
Sbjct: 199 GFGKVGSEVTRRAKGLGMHVIAHDPYAAADRARAIGVELVGFDEAISTADFISLHMPLTP 258
Query: 264 ATSKVLNDETFGKMKKGVRIINVARGGVIDEEALVRALDSGRVAQAALDVFTEEPPPADS 323
ATSK+LNDETF KMKKGVRIINVARGGVIDEEALVRALD+G VAQAALDVFTEEPPP DS
Sbjct: 259 ATSKMLNDETFAKMKKGVRIINVARGGVIDEEALVRALDAGIVAQAALDVFTEEPPPKDS 318
Query: 324 KLVQHERVTVTPHLGASTMEAQEGVAIEIAEAVVGALKGELAATAVNAPMVPAEVLTELK 383
KL+ HE VTVTPHLGASTMEAQEGVAIEIAEAVVGALKGELAATAVNAPMVPAEVL+ELK
Sbjct: 319 KLILHENVTVTPHLGASTMEAQEGVAIEIAEAVVGALKGELAATAVNAPMVPAEVLSELK 378
Query: 384 PFVELAEKLGRLAVQLVAGGSGVKTVKVSYASSRAPDDLDTRLLRAMITKGLIEPISDVF 443
PFVELAEKLGRLAVQLV+GGSGVK+VKV+YAS+RAPDDLDTRLLRAMITKGLIEPIS VF
Sbjct: 379 PFVELAEKLGRLAVQLVSGGSGVKSVKVTYASARAPDDLDTRLLRAMITKGLIEPISSVF 438
Query: 444 VNLVNADYTAKQRGLRLTEERILLDGSPESPLEFIQVQIANVESKFASAISESGEIKVEG 503
VNLVNAD++AKQRGLR+TEER +LDGSPESPLEFIQVQIANVESKFASAISESGEI VEG
Sbjct: 439 VNLVNADFSAKQRGLRITEERSILDGSPESPLEFIQVQIANVESKFASAISESGEITVEG 498
Query: 504 RVKDGVPHLTKVGSFEVDVSLEGSIILCRQVDQPGMIGTVGSILGSENVNVSFMSVGRVA 563
RVKDG+PHLTKVGSFEVDVSLEGSIILCRQVDQPGMIG VGSILG ENVNVSFMSVGRVA
Sbjct: 499 RVKDGIPHLTKVGSFEVDVSLEGSIILCRQVDQPGMIGKVGSILGEENVNVSFMSVGRVA 558
Query: 564 PRKHAVMAIGVDEQPRKETLKKIGDVPAIEEFVFLKL 600
PRKHAVMAIGVDEQP K TLKKIG++PA+EEFVFLKL
Sbjct: 559 PRKHAVMAIGVDEQPSKVTLKKIGEIPAVEEFVFLKL 595
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224060560|ref|XP_002300235.1| predicted protein [Populus trichocarpa] gi|118485917|gb|ABK94804.1| unknown [Populus trichocarpa] gi|222847493|gb|EEE85040.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1016 bits (2628), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 504/582 (86%), Positives = 546/582 (93%), Gaps = 6/582 (1%)
Query: 19 LSLSSKHSLSPLFSVSFNHKRAPPRLVIIASAAADGISSKPTVLIAEKLGQAGLDLLNEF 78
LSL+S + L P FS R +V+ AS ++SKPTVL+AEKLG+AG++LL +F
Sbjct: 22 LSLTSANKL-PAFSPLLTSSRRQRFIVLSAS-----LNSKPTVLVAEKLGEAGINLLKDF 75
Query: 79 ANVDCAYNLSPEELCTKISLCDALIVRSGTKVNRDVFESSAGRLKVVGRAGVGIDNVDLA 138
ANVDC+YNLSP+ELCTKISLCDA+IVRSGTKV+R+VFESS GRLKVVGRAGVGIDNVDLA
Sbjct: 76 ANVDCSYNLSPDELCTKISLCDAIIVRSGTKVSREVFESSGGRLKVVGRAGVGIDNVDLA 135
Query: 139 AATEFGCLVVNAPTANTVAAAEHGIALLAAMARNVAQADASVKAGKWQRNKYVGVSLVGK 198
AATE GCLVVNAPTANTVAAAEHGIAL+AAMARNVAQADASVKAGKW+RNKYVGVSLVGK
Sbjct: 136 AATEHGCLVVNAPTANTVAAAEHGIALMAAMARNVAQADASVKAGKWERNKYVGVSLVGK 195
Query: 199 TLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPADRARAIGVDLVSFDEAIATADFISLH 258
TLAV+GFGKVGSEVARRAKGLGMHVIAHDPYAPADRARAIGV+LVSFDEAIATADFISLH
Sbjct: 196 TLAVMGFGKVGSEVARRAKGLGMHVIAHDPYAPADRARAIGVELVSFDEAIATADFISLH 255
Query: 259 MPLTPATSKVLNDETFGKMKKGVRIINVARGGVIDEEALVRALDSGRVAQAALDVFTEEP 318
MPLTPAT+K+LNDETF KMKKGVRI+NVARGGVIDE+ALVRALD+G VAQAALDVFT EP
Sbjct: 256 MPLTPATAKILNDETFAKMKKGVRIVNVARGGVIDEDALVRALDAGIVAQAALDVFTVEP 315
Query: 319 PPADSKLVQHERVTVTPHLGASTMEAQEGVAIEIAEAVVGALKGELAATAVNAPMVPAEV 378
PP DSKLVQHERVTVTPHLGAST EAQEGVAIEIAEAVVGALKGELA+T+VNAPMVPAEV
Sbjct: 316 PPQDSKLVQHERVTVTPHLGASTKEAQEGVAIEIAEAVVGALKGELASTSVNAPMVPAEV 375
Query: 379 LTELKPFVELAEKLGRLAVQLVAGGSGVKTVKVSYASSRAPDDLDTRLLRAMITKGLIEP 438
LTELKP+VELAEKLGRLAVQLV+GGSGVK VKV+YAS+RAPDDLDTR+LRAMITKGLIEP
Sbjct: 376 LTELKPYVELAEKLGRLAVQLVSGGSGVKDVKVTYASARAPDDLDTRVLRAMITKGLIEP 435
Query: 439 ISDVFVNLVNADYTAKQRGLRLTEERILLDGSPESPLEFIQVQIANVESKFASAISESGE 498
IS VFVNLVNAD++AKQRGLR++EERIL DGSPESPL FIQVQIANVESKFASAISE+GE
Sbjct: 436 ISSVFVNLVNADFSAKQRGLRISEERILGDGSPESPLHFIQVQIANVESKFASAISENGE 495
Query: 499 IKVEGRVKDGVPHLTKVGSFEVDVSLEGSIILCRQVDQPGMIGTVGSILGSENVNVSFMS 558
IKVEGRVKDG+PHLTKVGSFEVDVSLEGSIILCRQVDQPGMIG VGS+LG ENVNVSFMS
Sbjct: 496 IKVEGRVKDGIPHLTKVGSFEVDVSLEGSIILCRQVDQPGMIGKVGSVLGVENVNVSFMS 555
Query: 559 VGRVAPRKHAVMAIGVDEQPRKETLKKIGDVPAIEEFVFLKL 600
VGR+APRK AVMAIGVDEQP KETLKKIGD+PA+EEFVFLKL
Sbjct: 556 VGRIAPRKQAVMAIGVDEQPSKETLKKIGDIPAVEEFVFLKL 597
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224105607|ref|XP_002313870.1| predicted protein [Populus trichocarpa] gi|222850278|gb|EEE87825.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1014 bits (2622), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 494/543 (90%), Positives = 530/543 (97%)
Query: 58 KPTVLIAEKLGQAGLDLLNEFANVDCAYNLSPEELCTKISLCDALIVRSGTKVNRDVFES 117
KPTVL+AEKLG+AG++LL +FANVDC+YNLSP+ELCTKISLCDALIVRSGTKV+R+VFES
Sbjct: 1 KPTVLVAEKLGEAGINLLKDFANVDCSYNLSPDELCTKISLCDALIVRSGTKVSREVFES 60
Query: 118 SAGRLKVVGRAGVGIDNVDLAAATEFGCLVVNAPTANTVAAAEHGIALLAAMARNVAQAD 177
S GRLKVVGRAGVGIDNVDLAAATE GCLVVNAPTANT+AAAEHGIALLAAMARNVAQAD
Sbjct: 61 SGGRLKVVGRAGVGIDNVDLAAATEHGCLVVNAPTANTIAAAEHGIALLAAMARNVAQAD 120
Query: 178 ASVKAGKWQRNKYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPADRARA 237
ASVKAGKWQRNKYVGVSLVGKTLAV+GFGKVGSEVARRAKGLGMHVIAHDPYAPADRARA
Sbjct: 121 ASVKAGKWQRNKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMHVIAHDPYAPADRARA 180
Query: 238 IGVDLVSFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVIDEEAL 297
IGV+LVSFDEA+ATADFISLHMPLTPAT+K+LNDETF KMKKGVRI+NVARGGVIDE+AL
Sbjct: 181 IGVELVSFDEALATADFISLHMPLTPATAKILNDETFVKMKKGVRIVNVARGGVIDEDAL 240
Query: 298 VRALDSGRVAQAALDVFTEEPPPADSKLVQHERVTVTPHLGASTMEAQEGVAIEIAEAVV 357
VRALD+G VAQAALDVFT EPPP DSKLVQHERVTVTPHLGASTMEAQEGVAIEIAEAVV
Sbjct: 241 VRALDAGIVAQAALDVFTVEPPPQDSKLVQHERVTVTPHLGASTMEAQEGVAIEIAEAVV 300
Query: 358 GALKGELAATAVNAPMVPAEVLTELKPFVELAEKLGRLAVQLVAGGSGVKTVKVSYASSR 417
GALKGELA+TAVNAPMVPAEVLTELKPFVELAEKLGRLAVQLV+GGSGVK VKV+YAS+R
Sbjct: 301 GALKGELASTAVNAPMVPAEVLTELKPFVELAEKLGRLAVQLVSGGSGVKDVKVTYASAR 360
Query: 418 APDDLDTRLLRAMITKGLIEPISDVFVNLVNADYTAKQRGLRLTEERILLDGSPESPLEF 477
APDDLDTR+LRAMITKGLIEPIS VFVNLVNAD++AKQRGLR++EERILLDGSPESPL+F
Sbjct: 361 APDDLDTRVLRAMITKGLIEPISSVFVNLVNADFSAKQRGLRISEERILLDGSPESPLDF 420
Query: 478 IQVQIANVESKFASAISESGEIKVEGRVKDGVPHLTKVGSFEVDVSLEGSIILCRQVDQP 537
IQVQIANVESKFASAISE+GEIKVEGRVKDG+PHLT+VGSFEVDVSLEGSIILCRQVDQP
Sbjct: 421 IQVQIANVESKFASAISETGEIKVEGRVKDGIPHLTRVGSFEVDVSLEGSIILCRQVDQP 480
Query: 538 GMIGTVGSILGSENVNVSFMSVGRVAPRKHAVMAIGVDEQPRKETLKKIGDVPAIEEFVF 597
GMIG VGS+LG +NVNVSFMSVGR+APRK AVMAIGVDEQP KETLKKIGD+PA+EEFVF
Sbjct: 481 GMIGKVGSVLGGQNVNVSFMSVGRIAPRKQAVMAIGVDEQPSKETLKKIGDIPAVEEFVF 540
Query: 598 LKL 600
LKL
Sbjct: 541 LKL 543
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356574282|ref|XP_003555278.1| PREDICTED: d-3-phosphoglycerate dehydrogenase, chloroplastic-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1008 bits (2607), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 498/572 (87%), Positives = 541/572 (94%), Gaps = 6/572 (1%)
Query: 31 FSVSFN--HKRAPPRLVIIASAAADGISSKPTVLIAEKLGQAGLDLLNEFANVDCAYNLS 88
FSVS H+ + P LV++ SA G+ +KPTVL+AEKLG AGL LL +FANVDC+YNLS
Sbjct: 28 FSVSLRPRHRGSRP-LVLVVSA---GLDAKPTVLVAEKLGDAGLKLLKDFANVDCSYNLS 83
Query: 89 PEELCTKISLCDALIVRSGTKVNRDVFESSAGRLKVVGRAGVGIDNVDLAAATEFGCLVV 148
EELCTKISLCDALIVRSGTKV+R+VFESSAGRLKVVGRAGVGIDNVDLAAATE GCLVV
Sbjct: 84 TEELCTKISLCDALIVRSGTKVSREVFESSAGRLKVVGRAGVGIDNVDLAAATEHGCLVV 143
Query: 149 NAPTANTVAAAEHGIALLAAMARNVAQADASVKAGKWQRNKYVGVSLVGKTLAVLGFGKV 208
NAPTANTVAAAEHGIALLAAMARN+AQADASVKAGKWQRNKYVGVSLVGKTLA+LGFGKV
Sbjct: 144 NAPTANTVAAAEHGIALLAAMARNIAQADASVKAGKWQRNKYVGVSLVGKTLAILGFGKV 203
Query: 209 GSEVARRAKGLGMHVIAHDPYAPADRARAIGVDLVSFDEAIATADFISLHMPLTPATSKV 268
GSEVARRAKGLGM VIAHDPYAPADRARA+GV+LV+F+EAIATADFISLHMPLT ATSK+
Sbjct: 204 GSEVARRAKGLGMTVIAHDPYAPADRARAVGVELVTFEEAIATADFISLHMPLTAATSKM 263
Query: 269 LNDETFGKMKKGVRIINVARGGVIDEEALVRALDSGRVAQAALDVFTEEPPPADSKLVQH 328
LNDETF KMKKGVRI+NVARGGVIDE+ALVRALDSG VAQAALDVFTEEPPP DSKL+ H
Sbjct: 264 LNDETFAKMKKGVRIVNVARGGVIDEDALVRALDSGIVAQAALDVFTEEPPPKDSKLILH 323
Query: 329 ERVTVTPHLGASTMEAQEGVAIEIAEAVVGALKGELAATAVNAPMVPAEVLTELKPFVEL 388
E VT TPHLGASTMEAQEGVAIEIAEAV+GALKGELAATAVNAPMVP+EVLTELKPFV+L
Sbjct: 324 ELVTATPHLGASTMEAQEGVAIEIAEAVLGALKGELAATAVNAPMVPSEVLTELKPFVDL 383
Query: 389 AEKLGRLAVQLVAGGSGVKTVKVSYASSRAPDDLDTRLLRAMITKGLIEPISDVFVNLVN 448
AEKLGRLAVQLVAGGSGVKTVKV+YA+SRAPDDLDTRLLRAMITKGLIEPIS VFVNLVN
Sbjct: 384 AEKLGRLAVQLVAGGSGVKTVKVTYATSRAPDDLDTRLLRAMITKGLIEPISSVFVNLVN 443
Query: 449 ADYTAKQRGLRLTEERILLDGSPESPLEFIQVQIANVESKFASAISESGEIKVEGRVKDG 508
AD+TAKQRG+R+TEER++LDGSPE+PLEFIQVQIANVES+FASAIS+SGEIKVEGRVKD
Sbjct: 444 ADFTAKQRGIRITEERVILDGSPENPLEFIQVQIANVESRFASAISDSGEIKVEGRVKDD 503
Query: 509 VPHLTKVGSFEVDVSLEGSIILCRQVDQPGMIGTVGSILGSENVNVSFMSVGRVAPRKHA 568
+PHLTKVGSF+VDVSLEGSIILCRQVDQPGMIG VGS+LG ENVNVSFMSVGR+APRK A
Sbjct: 504 IPHLTKVGSFDVDVSLEGSIILCRQVDQPGMIGKVGSVLGEENVNVSFMSVGRIAPRKQA 563
Query: 569 VMAIGVDEQPRKETLKKIGDVPAIEEFVFLKL 600
VMAIGVDEQP KE+LKKIG++P++EEFVFLKL
Sbjct: 564 VMAIGVDEQPSKESLKKIGEIPSVEEFVFLKL 595
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297798490|ref|XP_002867129.1| hypothetical protein ARALYDRAFT_491252 [Arabidopsis lyrata subsp. lyrata] gi|297312965|gb|EFH43388.1| hypothetical protein ARALYDRAFT_491252 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 996 bits (2574), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 494/589 (83%), Positives = 543/589 (92%), Gaps = 6/589 (1%)
Query: 16 SLK-LSLSSKHSLSPLFSVSF---NHKRAPPRLVIIASAAADGISSKPTVLIAEKLGQAG 71
SLK ++LSS+ L SV+F RLV+++ A DG SKPT+L+AEKLG+AG
Sbjct: 17 SLKNVTLSSRSPLPSAISVAFPSRGRNTLQRRLVLVSCTAGDG--SKPTILVAEKLGEAG 74
Query: 72 LDLLNEFANVDCAYNLSPEELCTKISLCDALIVRSGTKVNRDVFESSAGRLKVVGRAGVG 131
+ LL +FANVDC+YN++PEEL TKISLCDALIVRSGTKV R+VFESS GRLKVVGRAGVG
Sbjct: 75 VKLLEDFANVDCSYNMTPEELNTKISLCDALIVRSGTKVGREVFESSRGRLKVVGRAGVG 134
Query: 132 IDNVDLAAATEFGCLVVNAPTANTVAAAEHGIALLAAMARNVAQADASVKAGKWQRNKYV 191
IDNVDL+AATEFGCLVVNAPTANT+AAAEHGIAL+AAMARNVAQADASVKAG+W+RNKYV
Sbjct: 135 IDNVDLSAATEFGCLVVNAPTANTIAAAEHGIALMAAMARNVAQADASVKAGEWKRNKYV 194
Query: 192 GVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPADRARAIGVDLVSFDEAIAT 251
GVSLVGKTLAVLGFGKVG+EVARRAKGLGM VIAHDPYAPADRA AIGVDLVSFDEA+AT
Sbjct: 195 GVSLVGKTLAVLGFGKVGTEVARRAKGLGMRVIAHDPYAPADRAHAIGVDLVSFDEALAT 254
Query: 252 ADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVIDEEALVRALDSGRVAQAAL 311
ADFISLHMPLTP TSK+LNDETF KMKKGVRI+NVARGGVIDE+ALVRALDSG VAQAAL
Sbjct: 255 ADFISLHMPLTPTTSKILNDETFAKMKKGVRIVNVARGGVIDEDALVRALDSGIVAQAAL 314
Query: 312 DVFTEEPPPADSKLVQHERVTVTPHLGASTMEAQEGVAIEIAEAVVGALKGELAATAVNA 371
DVFT+EPP DSKLVQHERVTVTPHLGASTMEAQEGVAIEIAEAVVGAL GELAATAVNA
Sbjct: 315 DVFTKEPPAKDSKLVQHERVTVTPHLGASTMEAQEGVAIEIAEAVVGALNGELAATAVNA 374
Query: 372 PMVPAEVLTELKPFVELAEKLGRLAVQLVAGGSGVKTVKVSYASSRAPDDLDTRLLRAMI 431
PMV AEVLTELKP+V LAEKLGRLAVQLVAGGSGVK VK++YAS+RA DDLDTRLLRAMI
Sbjct: 375 PMVSAEVLTELKPYVVLAEKLGRLAVQLVAGGSGVKNVKITYASARATDDLDTRLLRAMI 434
Query: 432 TKGLIEPISDVFVNLVNADYTAKQRGLRLTEERILLDGSPESPLEFIQVQIANVESKFAS 491
TKG+IEPISDV+VNLVNAD+TAKQRGLRL+EER+LLDGSPESPLE I VQ++NVESKFAS
Sbjct: 435 TKGIIEPISDVYVNLVNADFTAKQRGLRLSEERVLLDGSPESPLETITVQLSNVESKFAS 494
Query: 492 AISESGEIKVEGRVKDGVPHLTKVGSFEVDVSLEGSIILCRQVDQPGMIGTVGSILGSEN 551
++SESGE+KVEGRVKDGVPHLTKVGSFEVDV+LEGSIILCRQVDQPGMIGTVGSILG N
Sbjct: 495 SLSESGEVKVEGRVKDGVPHLTKVGSFEVDVTLEGSIILCRQVDQPGMIGTVGSILGESN 554
Query: 552 VNVSFMSVGRVAPRKHAVMAIGVDEQPRKETLKKIGDVPAIEEFVFLKL 600
VNV+FMSVGR+APRK A+MAIGVD+ P K+TLKKIG++PAIEEFVFLKL
Sbjct: 555 VNVNFMSVGRIAPRKQAIMAIGVDDIPSKDTLKKIGEIPAIEEFVFLKL 603
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15235282|ref|NP_195146.1| D-3-phosphoglycerate dehydrogenase [Arabidopsis thaliana] gi|2911042|emb|CAA17552.1| Phosphoglycerate dehydrogenase-like protein [Arabidopsis thaliana] gi|7270370|emb|CAB80137.1| Phosphoglycerate dehydrogenase-like protein [Arabidopsis thaliana] gi|17380672|gb|AAL36166.1| putative phosphoglycerate dehydrogenase [Arabidopsis thaliana] gi|23297595|gb|AAN12903.1| putative phosphoglycerate dehydrogenase [Arabidopsis thaliana] gi|332660939|gb|AEE86339.1| D-3-phosphoglycerate dehydrogenase [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 984 bits (2545), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 485/586 (82%), Positives = 536/586 (91%), Gaps = 5/586 (0%)
Query: 18 KLSLSSKHSLSPLFSVSF---NHKRAPPRLVIIASAAADGISSKPTVLIAEKLGQAGLDL 74
++LSS+ L SV+F RLV+++ + DG SKPT+L+AEKLG AG+ L
Sbjct: 20 NVTLSSRSPLPSAISVAFPSRGRNTLQRRLVLVSCSTGDG--SKPTILVAEKLGDAGIKL 77
Query: 75 LNEFANVDCAYNLSPEELCTKISLCDALIVRSGTKVNRDVFESSAGRLKVVGRAGVGIDN 134
L + ANVDC+YN++PEEL KISLCDALIVRSGTKV R+VFESS GRLKVVGRAGVGIDN
Sbjct: 78 LEDVANVDCSYNMTPEELNIKISLCDALIVRSGTKVGREVFESSHGRLKVVGRAGVGIDN 137
Query: 135 VDLAAATEFGCLVVNAPTANTVAAAEHGIALLAAMARNVAQADASVKAGKWQRNKYVGVS 194
VDL+AATEFGCLVVNAPTANT+AAAEHGIAL+AAMARNVAQADASVKAG+W+RNKYVGVS
Sbjct: 138 VDLSAATEFGCLVVNAPTANTIAAAEHGIALMAAMARNVAQADASVKAGEWKRNKYVGVS 197
Query: 195 LVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPADRARAIGVDLVSFDEAIATADF 254
LVGKTLAVLGFGKVG+EVARRAKGLGM VIAHDPYAPADRA AIGVDLVSFDEA+ATADF
Sbjct: 198 LVGKTLAVLGFGKVGTEVARRAKGLGMRVIAHDPYAPADRAHAIGVDLVSFDEALATADF 257
Query: 255 ISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVIDEEALVRALDSGRVAQAALDVF 314
ISLHMPLTP TSK+LNDETF KMKKGVRI+NVARGGVIDE+ALVRALD+G VAQAALDVF
Sbjct: 258 ISLHMPLTPTTSKILNDETFAKMKKGVRIVNVARGGVIDEDALVRALDAGIVAQAALDVF 317
Query: 315 TEEPPPADSKLVQHERVTVTPHLGASTMEAQEGVAIEIAEAVVGALKGELAATAVNAPMV 374
T+EPP DSKLVQHERVTVTPHLGASTMEAQEGVAIEIAEAVVGAL GELAATAVNAPMV
Sbjct: 318 TKEPPAKDSKLVQHERVTVTPHLGASTMEAQEGVAIEIAEAVVGALNGELAATAVNAPMV 377
Query: 375 PAEVLTELKPFVELAEKLGRLAVQLVAGGSGVKTVKVSYASSRAPDDLDTRLLRAMITKG 434
AEVLTELKP+V LAEKLGRLAVQLVAGGSGVK K++YAS+RA DDLDTRLLRAMITKG
Sbjct: 378 SAEVLTELKPYVVLAEKLGRLAVQLVAGGSGVKNAKITYASARATDDLDTRLLRAMITKG 437
Query: 435 LIEPISDVFVNLVNADYTAKQRGLRLTEERILLDGSPESPLEFIQVQIANVESKFASAIS 494
+IEPISDV+VNLVNAD+TAKQRGLRL+EER+LLDGSPESPLE I VQ++NVESKFAS++S
Sbjct: 438 IIEPISDVYVNLVNADFTAKQRGLRLSEERVLLDGSPESPLETITVQLSNVESKFASSLS 497
Query: 495 ESGEIKVEGRVKDGVPHLTKVGSFEVDVSLEGSIILCRQVDQPGMIGTVGSILGSENVNV 554
ESGE+KVEG+VKDGVPHLTKVGSFEVDV+LEGSIILCRQVDQPGMIGTVGSILG NVNV
Sbjct: 498 ESGEVKVEGKVKDGVPHLTKVGSFEVDVTLEGSIILCRQVDQPGMIGTVGSILGESNVNV 557
Query: 555 SFMSVGRVAPRKHAVMAIGVDEQPRKETLKKIGDVPAIEEFVFLKL 600
+FMSVGR+APRK A+MAIGVD+ P KETLKKIG++PA+EEFVFLKL
Sbjct: 558 NFMSVGRIAPRKQAIMAIGVDDIPSKETLKKIGEIPAVEEFVFLKL 603
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| O29445 | SERA_ARCFU | 1, ., 1, ., 1, ., 9, 5 | 0.3915 | 0.8683 | 0.9886 | yes | no |
| O04130 | SERA_ARATH | 1, ., 1, ., 1, ., 9, 5 | 0.7753 | 0.905 | 0.8701 | no | no |
| P35136 | SERA_BACSU | 1, ., 1, ., 1, ., 9, 5 | 0.3936 | 0.8483 | 0.9695 | yes | no |
| O27051 | SERA_METTH | 1, ., 1, ., 1, ., 9, 5 | 0.3897 | 0.8733 | 0.9980 | yes | no |
| Q58424 | SERA_METJA | 1, ., 1, ., 1, ., 9, 5 | 0.4047 | 0.8583 | 0.9828 | yes | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| Your Input: | |||||||||||
| GSVIVG00036649001 | SubName- Full=Chromosome chr3 scaffold_8, whole genome shotgun sequence; (653 aa) | ||||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| GSVIVG00011750001 | SubName- Full=Chromosome undetermined scaffold_334, whole genome shotgun sequence (Chromosome u [...] (330 aa) | • | • | • | • | 0.955 | |||||
| GSVIVG00022240001 | SubName- Full=Chromosome chr6 scaffold_25, whole genome shotgun sequence; (401 aa) | • | • | • | 0.725 | ||||||
| GSVIVG00008369001 | SubName- Full=Chromosome undetermined scaffold_334, whole genome shotgun sequence (Chromosome u [...] (330 aa) | • | • | • | • | 0.585 | |||||
| GSVIVG00020486001 | SubName- Full=Chromosome chr5 scaffold_2, whole genome shotgun sequence; (564 aa) | • | • | 0.439 | |||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 600 | |||
| PRK13581 | 526 | PRK13581, PRK13581, D-3-phosphoglycerate dehydroge | 0.0 | |
| TIGR01327 | 525 | TIGR01327, PGDH, D-3-phosphoglycerate dehydrogenas | 1e-179 | |
| cd12173 | 304 | cd12173, PGDH_4, Phosphoglycerate dehydrogenases, | 1e-159 | |
| cd05303 | 301 | cd05303, PGDH_2, Phosphoglycerate dehydrogenase (P | 1e-115 | |
| COG0111 | 324 | COG0111, SerA, Phosphoglycerate dehydrogenase and | 1e-110 | |
| cd12172 | 306 | cd12172, PGDH_like_2, Putative D-3-Phosphoglycerat | 1e-106 | |
| pfam00389 | 312 | pfam00389, 2-Hacid_dh, D-isomer specific 2-hydroxy | 3e-96 | |
| cd05198 | 302 | cd05198, formate_dh_like, Formate/glycerate and re | 3e-93 | |
| cd05301 | 309 | cd05301, GDH, D-glycerate dehydrogenase/hydroxypyr | 5e-92 | |
| cd05299 | 312 | cd05299, CtBP_dh, C-terminal binding protein (CtBP | 5e-91 | |
| COG1052 | 324 | COG1052, LdhA, Lactate dehydrogenase and related d | 2e-89 | |
| cd12175 | 311 | cd12175, 2-Hacid_dh_11, Putative D-isomer specific | 1e-88 | |
| cd12178 | 317 | cd12178, 2-Hacid_dh_13, Putative D-isomer specific | 2e-85 | |
| cd12174 | 305 | cd12174, PGDH_like_3, Putative D-3-Phosphoglycerat | 2e-83 | |
| cd12177 | 321 | cd12177, 2-Hacid_dh_12, Putative D-isomer specific | 6e-82 | |
| cd12171 | 310 | cd12171, 2-Hacid_dh_10, Putative D-isomer specific | 1e-80 | |
| pfam02826 | 175 | pfam02826, 2-Hacid_dh_C, D-isomer specific 2-hydro | 2e-78 | |
| cd12162 | 307 | cd12162, 2-Hacid_dh_4, Putative D-isomer specific | 7e-78 | |
| cd12169 | 308 | cd12169, PGDH_like_1, Putative D-3-Phosphoglycerat | 3e-72 | |
| PRK13243 | 333 | PRK13243, PRK13243, glyoxylate reductase; Reviewed | 3e-71 | |
| cd12168 | 321 | cd12168, Mand_dh_like, D-Mandelate Dehydrogenase-l | 2e-70 | |
| cd01619 | 323 | cd01619, LDH_like, D-Lactate and related Dehydroge | 4e-69 | |
| cd12176 | 304 | cd12176, PGDH_3, Phosphoglycerate dehydrogenases, | 2e-67 | |
| cd12179 | 306 | cd12179, 2-Hacid_dh_14, Putative D-isomer specific | 3e-65 | |
| cd12157 | 318 | cd12157, PTDH, Thermostable Phosphite Dehydrogenas | 2e-62 | |
| cd12187 | 329 | cd12187, LDH_like_1, D-Lactate and related Dehydro | 3e-62 | |
| cd12167 | 330 | cd12167, 2-Hacid_dh_8, Putative D-isomer specific | 1e-59 | |
| PRK11790 | 409 | PRK11790, PRK11790, D-3-phosphoglycerate dehydroge | 2e-59 | |
| cd05300 | 313 | cd05300, 2-Hacid_dh_1, Putative D-isomer specific | 4e-59 | |
| cd12183 | 328 | cd12183, LDH_like_2, D-Lactate and related Dehydro | 2e-57 | |
| cd12161 | 315 | cd12161, GDH_like_1, Putative glycerate dehydrogen | 6e-57 | |
| cd12186 | 329 | cd12186, LDH, D-Lactate dehydrogenase and D-2-Hydr | 1e-54 | |
| PRK06487 | 317 | PRK06487, PRK06487, glycerate dehydrogenase; Provi | 2e-49 | |
| PRK15409 | 323 | PRK15409, PRK15409, bifunctional glyoxylate/hydrox | 3e-49 | |
| cd12165 | 314 | cd12165, 2-Hacid_dh_6, Putative D-isomer specific | 5e-48 | |
| cd12158 | 343 | cd12158, ErythrP_dh, D-Erythronate-4-Phosphate Deh | 5e-48 | |
| cd12156 | 301 | cd12156, HPPR, Hydroxy(phenyl)pyruvate Reductase, | 6e-48 | |
| cd12155 | 314 | cd12155, PGDH_1, Phosphoglycerate Dehydrogenase, 2 | 2e-47 | |
| cd05302 | 348 | cd05302, FDH, NAD-dependent Formate Dehydrogenase | 3e-45 | |
| PRK08410 | 311 | PRK08410, PRK08410, 2-hydroxyacid dehydrogenase; P | 2e-44 | |
| cd12185 | 322 | cd12185, HGDH_LDH_like, Putative Lactate dehydroge | 7e-44 | |
| PRK06932 | 314 | PRK06932, PRK06932, glycerate dehydrogenase; Provi | 1e-43 | |
| PLN02928 | 347 | PLN02928, PLN02928, oxidoreductase family protein | 3e-43 | |
| PRK07574 | 385 | PRK07574, PRK07574, formate dehydrogenase; Provisi | 8e-43 | |
| cd12180 | 308 | cd12180, 2-Hacid_dh_15, Putative D-isomer specific | 8e-41 | |
| cd12184 | 330 | cd12184, HGDH_like, (R)-2-Hydroxyglutarate Dehydro | 3e-40 | |
| cd12164 | 306 | cd12164, GDH_like_2, Putative glycerate dehydrogen | 2e-36 | |
| PRK00257 | 381 | PRK00257, PRK00257, erythronate-4-phosphate dehydr | 2e-33 | |
| PRK08605 | 332 | PRK08605, PRK08605, D-lactate dehydrogenase; Valid | 4e-33 | |
| PLN02306 | 386 | PLN02306, PLN02306, hydroxypyruvate reductase | 4e-32 | |
| PLN03139 | 386 | PLN03139, PLN03139, formate dehydrogenase; Provisi | 1e-31 | |
| cd12166 | 300 | cd12166, 2-Hacid_dh_7, Putative D-isomer specific | 2e-31 | |
| cd12159 | 303 | cd12159, 2-Hacid_dh_2, Putative D-isomer specific | 3e-30 | |
| PRK12480 | 330 | PRK12480, PRK12480, D-lactate dehydrogenase; Provi | 4e-27 | |
| PRK06436 | 303 | PRK06436, PRK06436, glycerate dehydrogenase; Provi | 1e-26 | |
| cd12163 | 334 | cd12163, 2-Hacid_dh_5, Putative D-isomer specific | 2e-26 | |
| cd12160 | 310 | cd12160, 2-Hacid_dh_3, Putative D-isomer specific | 2e-24 | |
| PRK15438 | 378 | PRK15438, PRK15438, erythronate-4-phosphate dehydr | 1e-23 | |
| cd04902 | 73 | cd04902, ACT_3PGDH-xct, C-terminal ACT (regulatory | 2e-19 | |
| PRK15469 | 312 | PRK15469, ghrA, bifunctional glyoxylate/hydroxypyr | 9e-19 | |
| cd12154 | 310 | cd12154, FDH_GDH_like, Formate/glycerate dehydroge | 1e-17 | |
| cd04879 | 71 | cd04879, ACT_3PGDH-like, ACT_3PGDH-like CD include | 1e-15 | |
| cd04903 | 71 | cd04903, ACT_LSD, C-terminal ACT domain of the L-s | 3e-10 | |
| smart00997 | 162 | smart00997, AdoHcyase_NAD, S-adenosyl-L-homocystei | 1e-09 | |
| COG0499 | 420 | COG0499, SAM1, S-adenosylhomocysteine hydrolase [C | 7e-07 | |
| TIGR00936 | 407 | TIGR00936, ahcY, adenosylhomocysteinase | 8e-06 | |
| cd00401 | 402 | cd00401, SAHH, S-Adenosylhomocysteine Hydrolase, N | 1e-05 | |
| PRK05476 | 425 | PRK05476, PRK05476, S-adenosyl-L-homocysteine hydr | 1e-05 | |
| PRK08306 | 296 | PRK08306, PRK08306, dipicolinate synthase subunit | 2e-04 | |
| cd02116 | 60 | cd02116, ACT, ACT domains are commonly involved in | 7e-04 | |
| PTZ00075 | 476 | PTZ00075, PTZ00075, Adenosylhomocysteinase; Provis | 0.002 | |
| TIGR03026 | 409 | TIGR03026, NDP-sugDHase, nucleotide sugar dehydrog | 0.002 | |
| pfam01842 | 66 | pfam01842, ACT, ACT domain | 0.003 | |
| pfam05221 | 430 | pfam05221, AdoHcyase, S-adenosyl-L-homocysteine hy | 0.004 | |
| cd12170 | 294 | cd12170, 2-Hacid_dh_9, Putative D-isomer specific | 0.004 |
| >gnl|CDD|237436 PRK13581, PRK13581, D-3-phosphoglycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 632 bits (1633), Expect = 0.0
Identities = 260/550 (47%), Positives = 350/550 (63%), Gaps = 32/550 (5%)
Query: 59 PTVLIAEKLGQAGLDLLNEFA--NVDCAYNLSPEELCTKISLCDALIVRSGTKVNRDVFE 116
VL+++ + AGL++L + VD L EEL I DALIVRS TKV +V E
Sbjct: 1 MKVLVSDPISPAGLEILKDAPGVEVDVKTGLDKEELLEIIGDYDALIVRSATKVTAEVLE 60
Query: 117 SSAGRLKVVGRAGVGIDNVDLAAATEFGCLVVNAPTANTVAAAEHGIALLAAMARNVAQA 176
+ A LKV+GRAGVG+DNVD+ AAT G +VVNAPT NT++AAEH IAL+ A+ARN+ QA
Sbjct: 61 A-AKNLKVIGRAGVGVDNVDVPAATRRGIIVVNAPTGNTISAAEHTIALMLALARNIPQA 119
Query: 177 DASVKAGKWQRNKYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPADRAR 236
AS+KAGKW+R K++GV L GKTL ++G G++GSEVA+RAK GM VIA+DPY +RA
Sbjct: 120 HASLKAGKWERKKFMGVELYGKTLGIIGLGRIGSEVAKRAKAFGMKVIAYDPYISPERAA 179
Query: 237 AIGVDLVSFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVIDEEA 296
+GV+LVS DE +A ADFI+LH PLTP T ++ E KMK GVRIIN ARGG+IDE A
Sbjct: 180 QLGVELVSLDELLARADFITLHTPLTPETRGLIGAEELAKMKPGVRIINCARGGIIDEAA 239
Query: 297 LVRALDSGRVAQAALDVFTEEPPPADSKLVQHERVTVTPHLGASTMEAQEGVAIEIAEAV 356
L AL SG+VA AALDVF +EPP DS L + V VTPHLGAST EAQE VAI++AE V
Sbjct: 240 LAEALKSGKVAGAALDVFEKEPPT-DSPLFELPNVVVTPHLGASTAEAQENVAIQVAEQV 298
Query: 357 VGALKGELAATAVNAPMVPAEVLTELKPFVELAEKLGRLAVQLVAGGSGVKTVKVSYASS 416
+ AL+G AVN P + AE +LKP+++LAEKLG LA QL +K+V+++Y
Sbjct: 299 IDALRGGPVPNAVNLPSITAEEAEKLKPYLDLAEKLGSLAAQLA--DGPIKSVEITYRGE 356
Query: 417 RAPDDLDTRLLRAMITKGLIEPISDVFVNLVNADYTAKQRGLRLTEERILLDGSPESPLE 476
A + DT L A KGL+ P+ VN VNA AK+RG+ + E + S ESP
Sbjct: 357 LA--EEDTEPLTAAALKGLLSPVLGERVNYVNAPLLAKERGIEVEESK-----SEESP-- 407
Query: 477 FIQVQIANVESKFASAI-----SESGEIKVEGRV-KDGVPHLTKVGSFEVDVSLEGSIIL 530
+++ I ++ GE V G V DG P + ++ + VD EG +++
Sbjct: 408 -----------DYSNLITVTVTTDDGERSVAGTVFGDGEPRIVEIDGYRVDAKPEGHMLI 456
Query: 531 CRQVDQPGMIGTVGSILGSENVNVSFMSVGRVAPRKHAVMAIGVDEQPRKETLKKIGDVP 590
R D+PG+IG VG++LG +N++ M +GR A+M + VD+ +E L+++ +P
Sbjct: 457 IRNRDRPGVIGKVGTLLGEAGINIAGMQLGRREAGGEALMVLSVDDPVPEEVLEELRALP 516
Query: 591 AIEEFVFLKL 600
I ++L
Sbjct: 517 GILSAKAVEL 526
|
Length = 526 |
| >gnl|CDD|233358 TIGR01327, PGDH, D-3-phosphoglycerate dehydrogenase | Back alignment and domain information |
|---|
Score = 518 bits (1335), Expect = e-179
Identities = 244/548 (44%), Positives = 341/548 (62%), Gaps = 32/548 (5%)
Query: 61 VLIAEKLGQAGLDLL-NEFANVDCAYNLSPEELCTKISLCDALIVRSGTKVNRDVFESSA 119
VLIA+ + G+D+L + VD LS EEL I DALIVRS TKV +V + A
Sbjct: 2 VLIADPISPDGIDILEDVGVEVDVQTGLSREELLEIIPDYDALIVRSATKVTEEVIAA-A 60
Query: 120 GRLKVVGRAGVGIDNVDLAAATEFGCLVVNAPTANTVAAAEHGIALLAAMARNVAQADAS 179
+LKV+GRAGVG+DN+D+ AAT G LVVNAPT NT++AAEH +A+L A ARN+ QADAS
Sbjct: 61 PKLKVIGRAGVGVDNIDIEAATARGILVVNAPTGNTISAAEHALAMLLAAARNIPQADAS 120
Query: 180 VKAGKWQRNKYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPADRARAIG 239
+K G+W R ++G L GKTL V+G G++GS VA+RAK GM V+A+DPY +RA +G
Sbjct: 121 LKEGEWDRKAFMGTELYGKTLGVIGLGRIGSIVAKRAKAFGMKVLAYDPYISPERAEQLG 180
Query: 240 VDLV-SFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVIDEEALV 298
V+LV DE +A ADFI++H PLTP T ++ E KMKKGV I+N ARGG+IDE AL
Sbjct: 181 VELVDDLDELLARADFITVHTPLTPETRGLIGAEELAKMKKGVIIVNCARGGIIDEAALY 240
Query: 299 RALDSGRVAQAALDVFTEEPPPADSKLVQHERVTVTPHLGASTMEAQEGVAIEIAEAVVG 358
AL+ G V AALDVF +EPP D+ L + V TPHLGAST EAQE VA ++AE V+
Sbjct: 241 EALEEGHVRAAALDVFEKEPPT-DNPLFDLDNVIATPHLGASTREAQENVATQVAEQVLD 299
Query: 359 ALKGELAATAVNAPMVPAEVLTELKPFVELAEKLGRLAVQLVAGGSGVKTVKVSYASSRA 418
ALKG AVNAP + A+V+ +LKP+++LAEKLG+LA QL+ G V++V+V+Y A
Sbjct: 300 ALKGLPVPNAVNAPGIDADVMEKLKPYLDLAEKLGKLAGQLLDG--AVQSVEVTYRGELA 357
Query: 419 PDDLDTRLLRAMITKGLIEPISDVFVNLVNADYTAKQRGLRLTEERILLDGSPESPLEFI 478
++ L KGL+ P+ D VN+VNA AK+RG+ + E +
Sbjct: 358 --TENSEPLTRAALKGLLSPVLDDEVNMVNAPAVAKERGITVEESK-------------- 401
Query: 479 QVQIANVESKFASAIS-----ESGEIKVEGRV-KDGVPHLTKVGSFEVDVSLEGSIILCR 532
+ + + +S +SG + V G V P + ++ F VD+ EG +++
Sbjct: 402 ----SESSPDYKNYLSVTVTGDSGTVSVAGTVFGGFSPRIVEIDGFHVDLEPEGIMLIIL 457
Query: 533 QVDQPGMIGTVGSILGSENVNVSFMSVGRVAPRKHAVMAIGVDEQPRKETLKKIGDVPAI 592
+D+PG+IG VG++LG+ +N++ M +GR A+M + +D+ E L++I +P I
Sbjct: 458 HLDKPGVIGKVGTLLGTAGINIASMQLGRKEKGGEALMLLSLDQPVPDEVLEEIKAIPDI 517
Query: 593 EEFVFLKL 600
+ L
Sbjct: 518 LSVFVVDL 525
|
This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli [Amino acid biosynthesis, Serine family]. Length = 525 |
| >gnl|CDD|240650 cd12173, PGDH_4, Phosphoglycerate dehydrogenases, NAD-binding and catalytic domains | Back alignment and domain information |
|---|
Score = 456 bits (1176), Expect = e-159
Identities = 179/304 (58%), Positives = 223/304 (73%), Gaps = 2/304 (0%)
Query: 61 VLIAEKLGQAGLDLLNEF-ANVDCAYNLSPEELCTKISLCDALIVRSGTKVNRDVFESSA 119
VL+ + + + GL+LL E VD A LS EEL I+ DALIVRS TKV +V E+ A
Sbjct: 2 VLVTDPIDEEGLELLREAGIEVDVAPGLSEEELLAIIADADALIVRSATKVTAEVIEA-A 60
Query: 120 GRLKVVGRAGVGIDNVDLAAATEFGCLVVNAPTANTVAAAEHGIALLAAMARNVAQADAS 179
RLKV+GRAGVG+DN+D+ AAT G LVVNAP ANT++ AEH IAL+ A+ARN+ QADAS
Sbjct: 61 PRLKVIGRAGVGVDNIDVEAATARGILVVNAPGANTISVAEHTIALMLALARNIPQADAS 120
Query: 180 VKAGKWQRNKYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPADRARAIG 239
++AGKW R K++GV L GKTL ++G G++G EVARRA+ GM V+A+DPY A+RA A G
Sbjct: 121 LRAGKWDRKKFMGVELRGKTLGIVGLGRIGREVARRARAFGMKVLAYDPYISAERAAAGG 180
Query: 240 VDLVSFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVIDEEALVR 299
V+LVS DE +A ADFISLH PLTP T ++N E KMK G +IN ARGG++DE AL
Sbjct: 181 VELVSLDELLAEADFISLHTPLTPETRGLINAEELAKMKPGAILINTARGGIVDEAALAD 240
Query: 300 ALDSGRVAQAALDVFTEEPPPADSKLVQHERVTVTPHLGASTMEAQEGVAIEIAEAVVGA 359
AL SG++A AALDVF +EPPPADS L+ V +TPHLGAST EAQE VA++ AE V+
Sbjct: 241 ALKSGKIAGAALDVFEQEPPPADSPLLGLPNVILTPHLGASTEEAQERVAVDAAEQVLAV 300
Query: 360 LKGE 363
L GE
Sbjct: 301 LAGE 304
|
Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases. PGDH in E. coli and Mycobacterium tuberculosis form tetramers, with subunits containing a Rossmann-fold NAD binding domain. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Length = 304 |
| >gnl|CDD|240628 cd05303, PGDH_2, Phosphoglycerate dehydrogenase (PGDH) NAD-binding and catalytic domains | Back alignment and domain information |
|---|
Score = 345 bits (888), Expect = e-115
Identities = 141/301 (46%), Positives = 203/301 (67%), Gaps = 3/301 (0%)
Query: 61 VLIAEKLGQAGLDLLNEFA-NVDCAYNLSPEELCTKISLCDALIVRSGTKVNRDVFESSA 119
+LI + + + ++ L E VD ++ EEL KI D LIVRS TKV ++V ++ A
Sbjct: 3 ILITDGIDEIAIEKLEEAGFEVDYEPLIAKEELLEKIKDYDVLIVRSRTKVTKEVIDA-A 61
Query: 120 GRLKVVGRAGVGIDNVDLAAATEFGCLVVNAPTANTVAAAEHGIALLAAMARNVAQADAS 179
LK++ RAGVG+DN+D+ A + G V+N P A++ + AE I L+ ++AR + +A+
Sbjct: 62 KNLKIIARAGVGLDNIDVEYAKKKGIKVINTPGASSNSVAELVIGLMLSLARFIHRANRE 121
Query: 180 VKAGKWQRNKYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPADRARAIG 239
+K GKW + KY G+ L GKTL ++GFG++G EVA+ A+ LGM+VIA+DPY ++A +G
Sbjct: 122 MKLGKWNKKKYKGIELRGKTLGIIGFGRIGREVAKIARALGMNVIAYDPYPKDEQAVELG 181
Query: 240 VDLVSFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVIDEEALVR 299
V VS +E + +DFISLH+PLTP T ++N + MK G IIN +RGGVIDEEAL+
Sbjct: 182 VKTVSLEELLKNSDFISLHVPLTPETKHMINKKELELMKDGAIIINTSRGGVIDEEALLE 241
Query: 300 ALDSGRVAQAALDVFTEEPPPADSKLVQHERVTVTPHLGASTMEAQEGVAIEIAEAVVGA 359
AL SG++A AALDVF EPPP SKL++ V++TPH+GAST EAQE + E+A ++
Sbjct: 242 ALKSGKLAGAALDVFENEPPPG-SKLLELPNVSLTPHIGASTKEAQERIGEELANKIIEF 300
Query: 360 L 360
L
Sbjct: 301 L 301
|
Phosphoglycerate dehydrogenase (PGDH) catalyzes the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDH comes in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases. PGDH in E. coli and Mycobacterium tuberculosis form tetramers, with subunits containing a Rossmann-fold NAD binding domain. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Length = 301 |
| >gnl|CDD|223189 COG0111, SerA, Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 332 bits (854), Expect = e-110
Identities = 155/327 (47%), Positives = 202/327 (61%), Gaps = 7/327 (2%)
Query: 56 SSKPTVLIAEKLGQAGLDLLNEFANVDC--AYNLSPEELCTKISLCDALIVRSGTKVNRD 113
VL+ + L L+ L +V+ +L EEL ++ DALIV S T V +
Sbjct: 1 KMMIKVLVTDPLAPDALEELLAAYDVEVPDGPDLDEEELLEALADADALIV-SVTPVTEE 59
Query: 114 VFESSAGRLKVVGRAGVGIDNVDLAAATEFGCLVVNAPTANTVAAAEHGIALLAAMARNV 173
V + A LK +GRAG G+DN+DL AAT+ G LVVNAP N ++ AE +ALL A+AR +
Sbjct: 60 VLAA-APNLKAIGRAGAGVDNIDLEAATKRGILVVNAPGGNAISVAELVLALLLALARRI 118
Query: 174 AQADASVKAGKWQRNKYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPAD 233
ADAS + G+W R + G L GKT+ ++G G++G VA+R K GM VI +DPY+P +
Sbjct: 119 PDADASQRRGEWDRKAFRGTELAGKTVGIIGLGRIGRAVAKRLKAFGMKVIGYDPYSPRE 178
Query: 234 RARAIGVDLV-SFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVI 292
RA GV V S DE +A AD ++LH+PLTP T ++N E KMK G +IN ARGGV+
Sbjct: 179 RAGVDGVVGVDSLDELLAEADILTLHLPLTPETRGLINAEELAKMKPGAILINAARGGVV 238
Query: 293 DEEALVRALDSGRVAQAALDVFTEEPPPADSKLVQHERVTVTPHLGASTMEAQEGVAIEI 352
DE+AL+ ALDSG++A AALDVF EEP PADS L V +TPH+G ST EAQE VA +
Sbjct: 239 DEDALLAALDSGKIAGAALDVFEEEPLPADSPLWDLPNVILTPHIGGSTDEAQERVAEIV 298
Query: 353 AEAVVGALKGELAATAVNAPMVPAEVL 379
AE +V L G NAP V E
Sbjct: 299 AENIVRYLAGG--PVVNNAPEVDLERG 323
|
Length = 324 |
| >gnl|CDD|240649 cd12172, PGDH_like_2, Putative D-3-Phosphoglycerate Dehydrogenases, NAD-binding and catalytic domains | Back alignment and domain information |
|---|
Score = 322 bits (827), Expect = e-106
Identities = 135/301 (44%), Positives = 181/301 (60%), Gaps = 10/301 (3%)
Query: 66 KLGQAGLDLLNEF-ANVDCA---YNLSPEELCTKISLCDALIVRSGT-KVNRDVFESSAG 120
K + +LL V L+ EEL + D +I G + +V + A
Sbjct: 11 KYSEEAKELLEAAGFEVVLNPLGRPLTEEELIELLKDADGVIA--GLDPITEEVLAA-AP 67
Query: 121 RLKVVGRAGVGIDNVDLAAATEFGCLVVNAPTANTVAAAEHGIALLAAMARNVAQADASV 180
RLKV+ R GVG DN+DL AA + G +V N P AN+ + AE I L+ A+AR + QAD V
Sbjct: 68 RLKVISRYGVGYDNIDLEAAKKRGIVVTNTPGANSNSVAELTIGLMLALARQIPQADREV 127
Query: 181 KAGKWQRNKYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPADRARAIGV 240
+AG W ++ VG L GKTL ++G G++G VARR G GM V+A+DPY + A+ GV
Sbjct: 128 RAGGW--DRPVGTELYGKTLGIIGLGRIGKAVARRLSGFGMKVLAYDPYPDEEFAKEHGV 185
Query: 241 DLVSFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVIDEEALVRA 300
+ VS +E + +DFISLH+PLTP T ++N MK G +IN ARGG++DEEAL A
Sbjct: 186 EFVSLEELLKESDFISLHLPLTPETRHLINAAELALMKPGAILINTARGGLVDEEALYEA 245
Query: 301 LDSGRVAQAALDVFTEEPPPADSKLVQHERVTVTPHLGASTMEAQEGVAIEIAEAVVGAL 360
L SGR+A AALDVF EEPPPADS L++ V +TPH+GAST EA + A+ V+ L
Sbjct: 246 LKSGRIAGAALDVFEEEPPPADSPLLELPNVILTPHIGASTKEAVLRMGTMAAQNVIDVL 305
Query: 361 K 361
Sbjct: 306 A 306
|
Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily, which also include groups such as L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Many, not all, members of this family are dimeric. Length = 306 |
| >gnl|CDD|215893 pfam00389, 2-Hacid_dh, D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain | Back alignment and domain information |
|---|
Score = 296 bits (760), Expect = 3e-96
Identities = 134/313 (42%), Positives = 178/313 (56%), Gaps = 4/313 (1%)
Query: 61 VLIAEKLGQAGLDLLNEFANVDCAYNLSPEELCTKISLCDALIVRSGTKVNRDVFESSAG 120
VLI + L L+LL E V+ L EEL DALIVRS T V +V E+ A
Sbjct: 1 VLITDPLRPEELELLKEGGEVEVHDELLTEELLEAAKDADALIVRSTTPVTAEVLEA-AP 59
Query: 121 RLKVVGRAGVGIDNVDLAAATEFGCLVVNAPTANTVAAAEHGIALLAAMARNVAQADASV 180
LKV+ R GVG+DN+DL AATE G LV N P +T + AE + L+ A+AR + +ADASV
Sbjct: 60 GLKVIARRGVGVDNIDLDAATERGILVTNVPGYSTESVAELTVGLILALARRIPEADASV 119
Query: 181 KAGKWQRNKYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPADRARAIGV 240
+AG W++ +G+ L GKTL V+G G +G A AK LGM V+A+DPY +RA GV
Sbjct: 120 RAGDWKKGGPIGLELYGKTLGVIGGGGIGGIGAAIAKALGMGVVAYDPYPNPERAEEGGV 179
Query: 241 DLVSFDEAI---ATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVIDEEAL 297
+++ D + +D + P T + + M K IN ARGG + EEA
Sbjct: 180 EVLLLDLLLLDLKESDDLINLAPPTTMKTGHIIINEARGMLKDAVAINNARGGGVIEEAA 239
Query: 298 VRALDSGRVAQAALDVFTEEPPPADSKLVQHERVTVTPHLGASTMEAQEGVAIEIAEAVV 357
+ AL +A AALDV EEPPP +S L+ V +TPH+ +T EAQE +A E AE ++
Sbjct: 240 LDALLEEGIAAAALDVVEEEPPPVNSPLLDLPNVILTPHIAGATEEAQENMAEEAAENLL 299
Query: 358 GALKGELAATAVN 370
LKG AVN
Sbjct: 300 AFLKGGTPPNAVN 312
|
This family represents the largest portion of the catalytic domain of 2-hydroxyacid dehydrogenases as the NAD binding domain is inserted within the structural domain. Length = 312 |
| >gnl|CDD|240622 cd05198, formate_dh_like, Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxy acid dehydrogenase family | Back alignment and domain information |
|---|
Score = 288 bits (739), Expect = 3e-93
Identities = 117/278 (42%), Positives = 168/278 (60%), Gaps = 2/278 (0%)
Query: 81 VDCAYNLSPEELCTKISLCDALIVRSGTKVNRDVFESSAGRLKVVGRAGVGIDNVDLAAA 140
V A +L +EL ++ DALIV S T V +V A +LK + AG G+DN+DL AA
Sbjct: 24 VIVADDLLADELEALLADADALIVSSTTPVTAEVLAK-APKLKFIQVAGAGVDNIDLDAA 82
Query: 141 TEFGCLVVNAPTANTVAAAEHGIALLAAMARNVAQADASVKAGK-WQRNKYVGVSLVGKT 199
+ G V N P AN A AEH + LL A+ R + +ADA+V+ G W + G L GKT
Sbjct: 83 KKRGITVTNVPGANAEAVAEHALGLLLALLRRLPRADAAVRRGWGWLWAGFPGYELEGKT 142
Query: 200 LAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPADRARAIGVDLVSFDEAIATADFISLHM 259
+ ++G G++G VA+R + GM V+ +D + +G +VS DE +A +D + LH+
Sbjct: 143 VGIVGLGRIGQRVAKRLQAFGMKVLYYDRTRKPEPEEDLGFRVVSLDELLAQSDVVVLHL 202
Query: 260 PLTPATSKVLNDETFGKMKKGVRIINVARGGVIDEEALVRALDSGRVAQAALDVFTEEPP 319
PLTP T ++N+E MK G ++N ARGG++DE+AL+RAL SG++A AALDVF EP
Sbjct: 203 PLTPETRHLINEEELALMKPGAVLVNTARGGLVDEDALLRALKSGKIAGAALDVFEPEPL 262
Query: 320 PADSKLVQHERVTVTPHLGASTMEAQEGVAIEIAEAVV 357
PAD L++ V +TPH+ T EA+E +A E +
Sbjct: 263 PADHPLLELPNVILTPHIAGYTEEARERMAEIAVENLE 300
|
Formate dehydrogenase, D-specific 2-hydroxy acid dehydrogenase, Phosphoglycerate Dehydrogenase, Lactate dehydrogenase, Thermostable Phosphite Dehydrogenase, and Hydroxy(phenyl)pyruvate reductase, among others, share a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. 2-hydroxyacid dehydrogenases are enzymes that catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of formate ion to carbon dioxide with the concomitant reduction of NAD+ to NADH. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. FDHs are found in all methylotrophic microorganisms in energy production and in the stress responses of plants. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase, among others. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 302 |
| >gnl|CDD|240626 cd05301, GDH, D-glycerate dehydrogenase/hydroxypyruvate reductase (GDH) | Back alignment and domain information |
|---|
Score = 285 bits (732), Expect = 5e-92
Identities = 122/310 (39%), Positives = 173/310 (55%), Gaps = 7/310 (2%)
Query: 59 PTVLIAEKLGQAGLDLLNEFANVDCA---YNLSPEELCTKISLCDALIVRSGTKVNRDVF 115
P VL+ +L + L LL E V+ L EEL D L+ K++ ++
Sbjct: 1 PKVLVTRRLPEEALALLREGFEVEVWDEDRPLPREELLEAAKGADGLLCTLTDKIDAELL 60
Query: 116 ESSAGRLKVVGRAGVGIDNVDLAAATEFGCLVVNAPTANTVAAAEHGIALLAAMARNVAQ 175
++ A LKV+ VG D++D+ AA G V N P T A A+ ALL A AR V +
Sbjct: 61 DA-APPLKVIANYSVGYDHIDVDAAKARGIPVTNTPDVLTDATADLAFALLLAAARRVVE 119
Query: 176 ADASVKAGKWQRNK---YVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPA 232
D V+AG+W+ +G L GKTL ++G G++G VARRAKG GM ++ H+
Sbjct: 120 GDRFVRAGEWKGWSPTLLLGTDLHGKTLGIVGMGRIGQAVARRAKGFGMKILYHNRSRKP 179
Query: 233 DRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVI 292
+ +G VS DE +A +DF+SLH PLTP T ++N E MK +IN ARGGV+
Sbjct: 180 EAEEELGARYVSLDELLAESDFVSLHCPLTPETRHLINAERLALMKPTAILINTARGGVV 239
Query: 293 DEEALVRALDSGRVAQAALDVFTEEPPPADSKLVQHERVTVTPHLGASTMEAQEGVAIEI 352
DE+ALV AL SG++A A LDVF EP PAD L+ V + PH+G++T+E + +A
Sbjct: 240 DEDALVEALKSGKIAGAGLDVFEPEPLPADHPLLTLPNVVLLPHIGSATVETRTAMAELA 299
Query: 353 AEAVVGALKG 362
A+ ++ L G
Sbjct: 300 ADNLLAVLAG 309
|
D-glycerate dehydrogenase (GDH, also known as hydroxypyruvate reductase, HPR) catalyzes the reversible reaction of (R)-glycerate + NAD+ to hydroxypyruvate + NADH + H+. In humans, HPR deficiency causes primary hyperoxaluria type 2, characterized by over-excretion of L-glycerate and oxalate in the urine, possibly due to an imbalance in competition with L-lactate dehydrogenase, another formate dehydrogenase (FDH)-like enzyme. GDH, like FDH and other members of the D-specific hydroxyacid dehydrogenase family that also includes L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase, typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form, despite often low sequence identity. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 309 |
| >gnl|CDD|240624 cd05299, CtBP_dh, C-terminal binding protein (CtBP), D-isomer-specific 2-hydroxyacid dehydrogenases related repressor | Back alignment and domain information |
|---|
Score = 283 bits (726), Expect = 5e-91
Identities = 124/276 (44%), Positives = 165/276 (59%), Gaps = 7/276 (2%)
Query: 88 SPEELCTKISLCDALIVRSGTKVNRDVFESSAGRLKVVGRAGVGIDNVDLAAATEFGCLV 147
+ +EL + DAL+V+ V +V E+ RLKV+ R GVG+DNVD+AAATE G V
Sbjct: 34 TEDELIEAAADADALLVQY-APVTAEVIEALP-RLKVIVRYGVGVDNVDVAAATERGIPV 91
Query: 148 VNAPTANTVAAAEHGIALLAAMARNVAQADASVKAGKWQRNKYVGV-SLVGKTLAVLGFG 206
N P T A+H +AL+ A+AR + D +V+AG W + L G TL ++GFG
Sbjct: 92 CNVPDYCTEEVADHALALILALARKLPFLDRAVRAGGWDWTVGGPIRRLRGLTLGLVGFG 151
Query: 207 KVGSEVARRAKGLGMHVIAHDPYAPADRARAIGVDLVSFDEAIATADFISLHMPLTPATS 266
++G VA+RAK G VIA+DPY P A GV +VS DE +A +D +SLH PLTP T
Sbjct: 152 RIGRAVAKRAKAFGFRVIAYDPYVPDGVAALGGVRVVSLDELLARSDVVSLHCPLTPETR 211
Query: 267 KVLNDETFGKMKKGVRIINVARGGVIDEEALVRALDSGRVAQAALDVFTEEPPPADSKLV 326
+++ E MK G ++N ARGG++DE AL RAL SGR+A AALDV EEPPPADS L+
Sbjct: 212 HLIDAEALALMKPGAFLVNTARGGLVDEAALARALKSGRIAGAALDVLEEEPPPADSPLL 271
Query: 327 QHERVTVTPHLG----ASTMEAQEGVAIEIAEAVVG 358
V +TPH S E + A E+ + G
Sbjct: 272 SAPNVILTPHAAWYSEESLAELRRKAAEEVVRVLRG 307
|
The transcriptional corepressor CtBP is a dehydrogenase with sequence and structural similarity to the d2-hydroxyacid dehydrogenase family. CtBP was initially identified as a protein that bound the PXDLS sequence at the adenovirus E1A C terminus, causing the loss of CR-1-mediated transactivation. CtBP binds NAD(H) within a deep cleft, undergoes a conformational change upon NAD binding, and has NAD-dependent dehydrogenase activity. Length = 312 |
| >gnl|CDD|223980 COG1052, LdhA, Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only] | Back alignment and domain information |
|---|
Score = 279 bits (716), Expect = 2e-89
Identities = 120/323 (37%), Positives = 170/323 (52%), Gaps = 10/323 (3%)
Query: 58 KPTVLIAEKLGQAGLDLLNEFANVDCAYNLSPE--ELCTKISLCDALIVRSGTKVNRDVF 115
K VL KL L+ L E V+ + EL ++ DA+I +++ +V
Sbjct: 2 KIVVLSTRKLPPEVLERLKEKFEVERYEDDLTPDTELAERLKDADAVITFVNDRIDAEVL 61
Query: 116 ESSAGRLKVVGRAGVGIDNVDLAAATEFGCLVVNAPTANTVAAAEHGIALLAAMARNVAQ 175
E LK++ G DNVDL AA E G V N P +T A AEH +AL+ A+AR + +
Sbjct: 62 EK-LPGLKLIATRSAGYDNVDLEAAKERGITVTNVPGYSTEAVAEHAVALILALARRIHE 120
Query: 176 ADASVKAGKWQRNKYV----GVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAP 231
D V+ G W + G L GKTL ++G G++G VARR KG GM V+ +D
Sbjct: 121 GDRRVREGNWSLSGGPDPLLGFDLRGKTLGIIGLGRIGQAVARRLKGFGMKVLYYDRSPN 180
Query: 232 ADRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGV 291
+ + +G V DE +A +D ISLH PLTP T ++N E KMK G ++N ARGG+
Sbjct: 181 PEAEKELGARYVDLDELLAESDIISLHCPLTPETRHLINAEELAKMKPGAILVNTARGGL 240
Query: 292 IDEEALVRALDSGRVAQAALDVFTEEPPPADSKL---VQHERVTVTPHLGASTMEAQEGV 348
+DE+AL+ AL SG++A A LDVF EP D L V +TPH+ ++T EA++ +
Sbjct: 241 VDEQALIDALKSGKIAGAGLDVFENEPALFDHPLLRLDNFPNVVLTPHIASATEEARKAM 300
Query: 349 AIEIAEAVVGALKGELAATAVNA 371
A E + G + VN
Sbjct: 301 AELALENLEAFFDGGVPPNEVNP 323
|
Length = 324 |
| >gnl|CDD|240652 cd12175, 2-Hacid_dh_11, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains | Back alignment and domain information |
|---|
Score = 276 bits (709), Expect = 1e-88
Identities = 112/311 (36%), Positives = 172/311 (55%), Gaps = 7/311 (2%)
Query: 60 TVLIAEKLGQAGLD----LLNEFANVDCAYNLSPEELCTKISLCDALIVRSGTKVNRDVF 115
VL + LL V+ +E ++ D L+ ++ ++
Sbjct: 1 KVLFLGPEFPDAEELLRALLPPAPGVEVVTAAELDEEAALLADADVLVPGMRKVIDAEL- 59
Query: 116 ESSAGRLKVVGRAGVGIDNVDLAAATEFGCLVVNAPTANTVAAAEHGIALLAAMARNVAQ 175
++A RL+++ + GVG+D VDL AAT G V N P N + AEH + L+ A+ R + +
Sbjct: 60 LAAAPRLRLIQQPGVGLDGVDLEAATARGIPVANIPGGNAESVAEHAVMLMLALLRRLPE 119
Query: 176 ADASVKAGKWQRNKY-VGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYA-PAD 233
AD ++AG+W R + L GKT+ ++G G +G VARR +G G+ VI +D + P
Sbjct: 120 ADRELRAGRWGRPEGRPSRELSGKTVGIVGLGNIGRAVARRLRGFGVEVIYYDRFRDPEA 179
Query: 234 RARAIGVDLVSFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVID 293
+ +GV V DE +A +D +SLH+PLTP T ++ E MK G +IN ARGG++D
Sbjct: 180 EEKDLGVRYVELDELLAESDVVSLHVPLTPETRHLIGAEELAAMKPGAILINTARGGLVD 239
Query: 294 EEALVRALDSGRVAQAALDVFTEEPPPADSKLVQHERVTVTPHLGASTMEAQEGVAIEIA 353
EEAL+ AL SG +A A LDVF +EP P D L++ + V +TPH+ T E+ + +A +A
Sbjct: 240 EEALLAALRSGHLAGAGLDVFWQEPLPPDDPLLRLDNVILTPHIAGVTDESYQRMAAIVA 299
Query: 354 EAVVGALKGEL 364
E + L+GE
Sbjct: 300 ENIARLLRGEP 310
|
2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 311 |
| >gnl|CDD|240655 cd12178, 2-Hacid_dh_13, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains | Back alignment and domain information |
|---|
Score = 268 bits (687), Expect = 2e-85
Identities = 113/318 (35%), Positives = 179/318 (56%), Gaps = 9/318 (2%)
Query: 60 TVLIAEKLGQAGLDLLNEFANVDCA---YNLSPEELCTKISLCDALIVRSGTKVNRDVFE 116
VL+ + + L+ L E V +S EEL +I+ DALI T V++++ +
Sbjct: 2 KVLVTGWIPKEALEELEENFEVTYYDGLGLISKEELLERIADYDALITPLSTPVDKEIID 61
Query: 117 SSAGRLKVVGRAGVGIDNVDLAAATEFGCLVVNAPTANTVAAAEHGIALLAAMARNVAQA 176
+ A LK++ G G DN+D+ A E G V N P +T AE L+ A+AR +A+
Sbjct: 62 A-AKNLKIIANYGAGFDNIDVDYAKEKGIPVTNTPAVSTEPTAELTFGLILALARRIAEG 120
Query: 177 DASVKAGK---WQRNKYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPY-APA 232
D ++ G W ++G L GKTL ++G G++G VARRAK GM ++ ++ +
Sbjct: 121 DRLMRRGGFLGWAPLFFLGHELAGKTLGIIGMGRIGQAVARRAKAFGMKILYYNRHRLSE 180
Query: 233 DRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVI 292
+ + +G V DE + +DF+SLH P TP T +++ F MK +IN ARG ++
Sbjct: 181 ETEKELGATYVDLDELLKESDFVSLHAPYTPETHHLIDAAAFKLMKPTAYLINAARGPLV 240
Query: 293 DEEALVRALDSGRVAQAALDVFTEEPPPADSKLVQHERVTVTPHLGASTMEAQEGVAIEI 352
DE+ALV AL +G +A AALDVF EP + +L + + V +TPH+G +T+EA++ +A E
Sbjct: 241 DEKALVDALKTGEIAGAALDVFEFEPEVSP-ELKKLDNVILTPHIGNATVEARDAMAKEA 299
Query: 353 AEAVVGALKGELAATAVN 370
A+ ++ L+G+ VN
Sbjct: 300 ADNIISFLEGKRPKNIVN 317
|
2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 317 |
| >gnl|CDD|240651 cd12174, PGDH_like_3, Putative D-3-Phosphoglycerate Dehydrogenases, NAD-binding and catalytic domains | Back alignment and domain information |
|---|
Score = 262 bits (673), Expect = 2e-83
Identities = 118/323 (36%), Positives = 171/323 (52%), Gaps = 31/323 (9%)
Query: 60 TVLIAEKLGQAGLDLLNEFANVDCAYNLSPEELCTKISLCDALIVRSGTKVNRDVFESSA 119
+L A K+ + GL+ Y + E+ DALIVRS + +
Sbjct: 2 KILTANKISKKGLERFK-----KDKYEVK-EDALED---PDALIVRSD---KLHDMDFAP 49
Query: 120 GRLKVVGRAGVGIDNVDLAAATEFGCLVVNAPTANTVAAAEHGIALLAAMARNVAQA--- 176
LK + RAG G++N+D+ AA++ G +V N P AN A AE IA++ A++RN+ QA
Sbjct: 50 S-LKAIARAGAGVNNIDVDAASKRGIVVFNTPGANANAVAELVIAMMLALSRNIIQAIKW 108
Query: 177 ------DASVKAGKWQRNKYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYA 230
D K + + ++VG L GKTL V+G G +G VA A LGM VI +DPY
Sbjct: 109 VTNGDGDDISKGVEKGKKQFVGTELRGKTLGVIGLGNIGRLVANAALALGMKVIGYDPYL 168
Query: 231 PADRARAIGVDLV---SFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVA 287
+ A + V++ S +E +ATAD+I+LH+PLT T ++N E KMK G ++N A
Sbjct: 169 SVEAAWKLSVEVQRVTSLEELLATADYITLHVPLTDETRGLINAELLAKMKPGAILLNFA 228
Query: 288 RGGVIDEEALVRALDSGRVAQAALDVFTEEPPPADSKLVQHERVTVTPHLGASTMEAQEG 347
RG ++DEEAL+ ALD G++ D P + L V TPHLGAST EA+E
Sbjct: 229 RGEIVDEEALLEALDEGKLGGYVTDF------PEPALLGHLPNVIATPHLGASTEEAEEN 282
Query: 348 VAIEIAEAVVGALKGELAATAVN 370
A+ A ++ L+ +VN
Sbjct: 283 CAVMAARQIMDFLETGNITNSVN 305
|
Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily, which also include groups such as L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Many, not all, members of this family are dimeric. Length = 305 |
| >gnl|CDD|240654 cd12177, 2-Hacid_dh_12, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains | Back alignment and domain information |
|---|
Score = 259 bits (665), Expect = 6e-82
Identities = 122/309 (39%), Positives = 178/309 (57%), Gaps = 9/309 (2%)
Query: 65 EKLGQAGLDLLNEFANVDCAYNLSPEELCTKISLCDALIVRSGTKVNRDVFESSAGRLKV 124
++L + G + V ++S + L K+ D +I +++ FE LK+
Sbjct: 19 QRLKKIGYV---DRFEVP--PDISGKALAEKLKGYDIIIASVTPNFDKEFFEY-NDGLKL 72
Query: 125 VGRAGVGIDNVDLAAATEFGCLVVNAPTA-NTVAAAEHGIALLAAMARNVAQADASVKAG 183
+ R G+G DNVDL AATE G +V P A A AEH +AL+ + R + QA +VK G
Sbjct: 73 IARHGIGYDNVDLKAATEHGVIVTRVPGAVERDAVAEHAVALILTVLRKINQASEAVKEG 132
Query: 184 KWQ-RNKYVGVSLVGKTLAVLGFGKVGSEVARRAK-GLGMHVIAHDPYAPADRARAIGVD 241
KW R +VG L GKT+ ++G+G +GS VA K G V+A+DPY + + G
Sbjct: 133 KWTERANFVGHELSGKTVGIIGYGNIGSRVAEILKEGFNAKVLAYDPYVSEEVIKKKGAK 192
Query: 242 LVSFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVIDEEALVRAL 301
VS +E +A +D ISLH PLT T ++N++ F KMKKGV ++N ARG +IDEEAL+ AL
Sbjct: 193 PVSLEELLAESDIISLHAPLTEETYHMINEKAFSKMKKGVILVNTARGELIDEEALIEAL 252
Query: 302 DSGRVAQAALDVFTEEPPPADSKLVQHERVTVTPHLGASTMEAQEGVAIEIAEAVVGALK 361
SG++A A LDV EEP AD L+ +E V +TPH+GA T E+ G+ ++ + + L
Sbjct: 253 KSGKIAGAGLDVLEEEPIKADHPLLHYENVVITPHIGAYTYESLYGMGEKVVDDIEDFLA 312
Query: 362 GELAATAVN 370
G+ +N
Sbjct: 313 GKEPKGILN 321
|
2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 321 |
| >gnl|CDD|240648 cd12171, 2-Hacid_dh_10, Putative D-isomer specific 2-hydroxyacid dehydrogenases | Back alignment and domain information |
|---|
Score = 256 bits (656), Expect = 1e-80
Identities = 108/262 (41%), Positives = 156/262 (59%), Gaps = 10/262 (3%)
Query: 89 PEELCTKISLCDALIVRSGTKVNRDVFESSAGRLKVVG--RAGVGIDNVDLAAATEFGCL 146
EEL + D LI V + V E+ A +LK++G R G +NVD+ AATE G
Sbjct: 37 EEELLEALKDADILITHFAP-VTKKVIEA-APKLKLIGVCRGGP--ENVDVEAATERGIP 92
Query: 147 VVNAPTANTVAAAEHGIALLAAMARNVAQADASVKAGKWQRNKY----VGVSLVGKTLAV 202
V+N P N A AE + L+ A RN+A+A A++K G+W+++ Y G L GKT+ +
Sbjct: 93 VLNTPGRNAEAVAEFTVGLMLAETRNIARAHAALKDGEWRKDYYNYDGYGPELRGKTVGI 152
Query: 203 LGFGKVGSEVARRAKGLGMHVIAHDPYAPADRARAIGVDLVSFDEAIATADFISLHMPLT 262
+GFG +G VA+R K G V+ +DPY ++ A GV VS +E + +D +SLH LT
Sbjct: 153 VGFGAIGRRVAKRLKAFGAEVLVYDPYVDPEKIEADGVKKVSLEELLKRSDVVSLHARLT 212
Query: 263 PATSKVLNDETFGKMKKGVRIINVARGGVIDEEALVRALDSGRVAQAALDVFTEEPPPAD 322
P T ++ E F MK IN AR G++DE+AL+ AL+ G++ AALDVF EEP PAD
Sbjct: 213 PETRGMIGAEEFALMKPTAYFINTARAGLVDEDALIEALEEGKIGGAALDVFPEEPLPAD 272
Query: 323 SKLVQHERVTVTPHLGASTMEA 344
L++ + VT+TPH+ +T +
Sbjct: 273 HPLLKLDNVTLTPHIAGATRDV 294
|
2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 310 |
| >gnl|CDD|217244 pfam02826, 2-Hacid_dh_C, D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain | Back alignment and domain information |
|---|
Score = 245 bits (627), Expect = 2e-78
Identities = 86/176 (48%), Positives = 118/176 (67%), Gaps = 1/176 (0%)
Query: 163 IALLAAMARNVAQADASVKAGKWQRNKYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMH 222
+ALL A+AR + +AD V+AG+W+ + +G L GKT+ ++G G++G VARR K GM
Sbjct: 1 LALLLALARRIPEADRQVRAGRWRPDALLGRELSGKTVGIIGLGRIGRAVARRLKAFGMK 60
Query: 223 VIAHDPYAPADRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVR 282
VIA+D Y P A A+G VS DE +A +D +SLH+PLTP T ++N E MK G
Sbjct: 61 VIAYDRY-PKAEAEALGARYVSLDELLAESDVVSLHLPLTPETRHLINAERLALMKPGAI 119
Query: 283 IINVARGGVIDEEALVRALDSGRVAQAALDVFTEEPPPADSKLVQHERVTVTPHLG 338
+IN ARGG++DE+AL+ AL SGR+A AALDVF EP P D L++ V +TPH+
Sbjct: 120 LINTARGGLVDEDALIAALKSGRIAGAALDVFEPEPLPPDHPLLELPNVILTPHIA 175
|
This domain is inserted into the catalytic domain, the large dehydrogenase and D-lactate dehydrogenase families in SCOP. N-terminal portion of which is represented by family pfam00389. Length = 175 |
| >gnl|CDD|240639 cd12162, 2-Hacid_dh_4, Putative D-isomer specific 2-hydroxyacid dehydrogenases | Back alignment and domain information |
|---|
Score = 248 bits (637), Expect = 7e-78
Identities = 110/282 (39%), Positives = 160/282 (56%), Gaps = 13/282 (4%)
Query: 72 LDLLNEFANVDCAYNLSPEELCTKISLCDALIVRSGTKVNRDVFESSAGRLKVVGRAGVG 131
D L + SPEE+ +I D +I + ++ +V LK++G G
Sbjct: 18 WDPLEFLGELTVYDRTSPEEVVERIKDADIVIT-NKVVLDAEVLAQ-LPNLKLIGVLATG 75
Query: 132 IDNVDLAAATEFGCLVVNAPTANTVAAAEHGIALLAAMARNVAQADASVKAGKWQRN--- 188
+NVDLAAA E G V N P +T + A+H ALL A+AR VA + VKAG+WQ++
Sbjct: 76 YNNVDLAAAKERGITVTNVPGYSTDSVAQHTFALLLALARLVAYHNDVVKAGEWQKSPDF 135
Query: 189 ---KYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPADRARAIGVDLVSF 245
Y + L GKTL ++G+G +G VAR A+ GM V+ + VS
Sbjct: 136 CFWDYPIIELAGKTLGIIGYGNIGQAVARIARAFGMKVLFAERKGAPPL----REGYVSL 191
Query: 246 DEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVIDEEALVRALDSGR 305
DE +A +D ISLH PLTP T ++N E KMK G +IN ARGG++DE+AL AL+SG+
Sbjct: 192 DELLAQSDVISLHCPLTPETRNLINAEELAKMKPGAILINTARGGLVDEQALADALNSGK 251
Query: 306 VAQAALDVFTEEPPPADSKLVQ-HERVTVTPHLGASTMEAQE 346
+A A LDV ++EPP AD+ L++ + +TPH+ ++ EA++
Sbjct: 252 IAGAGLDVLSQEPPRADNPLLKAAPNLIITPHIAWASREARQ 293
|
2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine yydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 307 |
| >gnl|CDD|240646 cd12169, PGDH_like_1, Putative D-3-Phosphoglycerate Dehydrogenases | Back alignment and domain information |
|---|
Score = 233 bits (598), Expect = 3e-72
Identities = 107/278 (38%), Positives = 156/278 (56%), Gaps = 6/278 (2%)
Query: 87 LSPEELCTKISLCDALIV-RSGTKVNRDVFESSAGRLKVVGRAGVGIDNVDLAAATEFGC 145
L + L +++ DA+++ R T + E LK++ G+ ++DLAAA E G
Sbjct: 35 LDEDALAERLAPFDAIVLMRERTPFPAALLER-LPNLKLLVTTGMRNASIDLAAAKERGI 93
Query: 146 LVVNAPTANTVAAAEHGIALLAAMARNVAQADASVKAGKWQRNKYVGVSLVGKTLAVLGF 205
+V A AE AL+ A+ARN+ + DA+++AG WQ +G L GKTL ++G
Sbjct: 94 VVCGTG-GGPTATAELTWALILALARNLPEEDAALRAGGWQTT--LGTGLAGKTLGIVGL 150
Query: 206 GKVGSEVARRAKGLGMHVIAHDPYAPADRARAIGVDL-VSFDEAIATADFISLHMPLTPA 264
G++G+ VAR + GM VIA A+RA A GV+ VS +E AT+D +SLH+ L+
Sbjct: 151 GRIGARVARIGQAFGMRVIAWSSNLTAERAAAAGVEAAVSKEELFATSDVVSLHLVLSDR 210
Query: 265 TSKVLNDETFGKMKKGVRIINVARGGVIDEEALVRALDSGRVAQAALDVFTEEPPPADSK 324
T ++ E MK ++N +RG ++DE AL+ AL +GR+A AALDVF EP PAD
Sbjct: 211 TRGLVGAEDLALMKPTALLVNTSRGPLVDEGALLAALRAGRIAGAALDVFDVEPLPADHP 270
Query: 325 LVQHERVTVTPHLGASTMEAQEGVAIEIAEAVVGALKG 362
L V +TPH+G T EA EG + E + L G
Sbjct: 271 LRGLPNVLLTPHIGYVTEEAYEGFYGQAVENIAAWLAG 308
|
Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily, which also include groups such as L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Many, not all, members of this family are dimeric. Length = 308 |
| >gnl|CDD|183914 PRK13243, PRK13243, glyoxylate reductase; Reviewed | Back alignment and domain information |
|---|
Score = 232 bits (593), Expect = 3e-71
Identities = 119/328 (36%), Positives = 189/328 (57%), Gaps = 12/328 (3%)
Query: 57 SKPTVLIAEKLGQAGLDLLNEFANVDCAYNLSP---EELCTKISLCDALIVRSGTKVNRD 113
KP V I ++ + G+++L E V+ + E L K+ DAL+ +++ +
Sbjct: 1 MKPKVFITREIPENGIEMLEEHFEVEVWEDEREIPREVLLEKVRDVDALVTMLSERIDCE 60
Query: 114 VFESSAGRLKVVGRAGVGIDNVDLAAATEFGCLVVNAPTANTVAAAEHGIALLAAMARNV 173
VFE+ A RL++V VG DN+D+ AT G V N P T A A+ ALL A AR +
Sbjct: 61 VFEA-APRLRIVANYAVGYDNIDVEEATRRGIYVTNTPGVLTEATADFAWALLLATARRL 119
Query: 174 AQADASVKAGKWQRNK-------YVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAH 226
+AD V++G+W+R ++G + GKT+ ++GFG++G VARRAKG GM ++ +
Sbjct: 120 VEADHFVRSGEWKRRGVAWHPLMFLGYDVYGKTIGIIGFGRIGQAVARRAKGFGMRILYY 179
Query: 227 DPYAPADRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINV 286
+ + +G + +E + +DF+SLH+PLT T ++N+E MK ++N
Sbjct: 180 SRTRKPEAEKELGAEYRPLEELLRESDFVSLHVPLTKETYHMINEERLKLMKPTAILVNT 239
Query: 287 ARGGVIDEEALVRALDSGRVAQAALDVFTEEPPPADSKLVQHERVTVTPHLGASTMEAQE 346
ARG V+D +ALV+AL G +A A LDVF EEP + +L + V + PH+G++T EA+E
Sbjct: 240 ARGKVVDTKALVKALKEGWIAGAGLDVFEEEPYY-NEELFSLKNVVLAPHIGSATFEARE 298
Query: 347 GVAIEIAEAVVGALKGELAATAVNAPMV 374
G+A +AE ++ +GE+ T VN +V
Sbjct: 299 GMAELVAENLIAFKRGEVPPTLVNREVV 326
|
Length = 333 |
| >gnl|CDD|240645 cd12168, Mand_dh_like, D-Mandelate Dehydrogenase-like dehydrogenases | Back alignment and domain information |
|---|
Score = 229 bits (587), Expect = 2e-70
Identities = 102/243 (41%), Positives = 145/243 (59%), Gaps = 9/243 (3%)
Query: 122 LKVVGRAGVGIDNVDLAAATEFGCLVVNAPTANTVAAAEHGIAL-LAAMARNVAQADASV 180
LK++ AG G D +D+ A T+ G V N P A A A+ + L L A+ RN ++A+ S
Sbjct: 77 LKIIAHAGAGYDQIDVDALTKRGIQVSNTPGAVDEATADTALFLILGAL-RNFSRAERSA 135
Query: 181 KAGKWQRNK--YVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPY-APADRARA 237
+AGKW+ + GKTL +LG G +G +AR+A GM +I H+ P + +A
Sbjct: 136 RAGKWRGFLDLTLAHDPRGKTLGILGLGGIGKAIARKAAAFGMKIIYHNRSRLPEELEKA 195
Query: 238 IGVDLVSFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVIDEEAL 297
+ VS DE +A +D +SL+ PLT AT ++N + F KMK GV I+N ARG VIDE+AL
Sbjct: 196 LATYYVSLDELLAQSDVVSLNCPLTAATRHLINKKEFAKMKDGVIIVNTARGAVIDEDAL 255
Query: 298 VRALDSGRVAQAALDVFTEEPPPADSKLVQHERVTVTPHLGASTMEAQ---EGVAIEIAE 354
V AL+SG+VA A LDVF EP + L++ VT+ PH+G T+E Q E + +E E
Sbjct: 256 VDALESGKVASAGLDVFENEPEV-NPGLLKMPNVTLLPHMGTLTVETQEKMEELVLENIE 314
Query: 355 AVV 357
A +
Sbjct: 315 AFL 317
|
D-Mandelate dehydrogenase (D-ManDH), identified as an enzyme that interconverts benzoylformate and D-mandelate, is a D-2-hydroxyacid dehydrogenase family member that catalyzes the conversion of c3-branched 2-ketoacids. D-ManDH exhibits broad substrate specificities for 2-ketoacids with large hydrophobic side chains, particularly those with C3-branched side chains. 2-hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Glycerate dehydrogenase catalyzes the reaction (R)-glycerate + NAD+ to hydroxypyruvate + NADH + H+. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 321 |
| >gnl|CDD|240620 cd01619, LDH_like, D-Lactate and related Dehydrogenases, NAD-binding and catalytic domains | Back alignment and domain information |
|---|
Score = 226 bits (578), Expect = 4e-69
Identities = 109/295 (36%), Positives = 154/295 (52%), Gaps = 15/295 (5%)
Query: 83 CAYNLSPEELCTKISLCDALIVRSGTKVNRDVFESSAGRLKVVGRAGVGIDNVDLAAATE 142
Y L+ +E DA++ K++ ++ + + G LK + G DN+DL A E
Sbjct: 30 VTYLLNDDETAELAKGADAILTAFTDKIDAELLDKAPG-LKFISLRATGYDNIDLDYAKE 88
Query: 143 FGCLVVNAPTANTVAAAEHGIALLAAMARNVAQADASVKAGKWQRNKYVGVSLVGKTLAV 202
G V N P + A AEH IAL+ A+ RN D K Q +G L +T+ V
Sbjct: 89 LGIGVTNVPEYSPNAVAEHTIALILALLRNRKYIDERDKNQDLQDAGVIGRELEDQTVGV 148
Query: 203 LGFGKVGSEVARRAKGLGMHVIAHDPYAPADRARAIGVDLVSFDEAIATADFISLHMPLT 262
+G GK+G VA+RAKG GM VIA+DP+ + GV VS +E +D ISLH+PLT
Sbjct: 149 VGTGKIGRAVAQRAKGFGMKVIAYDPFRNPELE-DKGVKYVSLEELFKNSDIISLHVPLT 207
Query: 263 PATSKVLNDETFGKMKKGVRIINVARGGVIDEEALVRALDSGRVAQAALDVFTEEPP--- 319
P ++N+E F MKKGV IIN ARG ++D EAL+ ALDSG++ A LDV +E P
Sbjct: 208 PENHHMINEEAFKLMKKGVIIINTARGSLVDTEALIEALDSGKIFGAGLDVLEDETPDLL 267
Query: 320 ----------PADSKLVQHERVTVTPHLGASTMEAQEGVAIEIAEAVVGALKGEL 364
++ L + V +TPH T +A + + E +V L+GE
Sbjct: 268 KDLEGEIFKDALNALLGRRPNVIITPHTAFYTDDALKNMVEISCENIVDFLEGEE 322
|
D-Lactate dehydrogenase (LDH) catalyzes the interconversion of pyruvate and lactate, and is a member of the 2-hydroxyacid dehydrogenase family. LDH is homologous to D-2-Hydroxyisocaproic acid dehydrogenase (D-HicDH) and shares the 2 domain structure of formate dehydrogenase. D-HicDH is a NAD-dependent member of the hydroxycarboxylate dehydrogenase family, and shares the Rossmann fold typical of many NAD binding proteins. D-HicDH from Lactobacillus casei forms a monomer and catalyzes the reaction R-CO-COO(-) + NADH + H+ to R-COH-COO(-) + NAD+. Similar to the structurally distinct L-HicDH, D-HicDH exhibits low side-chain R specificity, accepting a wide range of 2-oxocarboxylic acid side chains. (R)-2-hydroxyglutarate dehydrogenase (HGDH) catalyzes the NAD-dependent reduction of 2-oxoglutarate to (R)-2-hydroxyglutarate. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 323 |
| >gnl|CDD|240653 cd12176, PGDH_3, Phosphoglycerate dehydrogenases, NAD-binding and catalytic domains | Back alignment and domain information |
|---|
Score = 221 bits (566), Expect = 2e-67
Identities = 108/305 (35%), Positives = 168/305 (55%), Gaps = 13/305 (4%)
Query: 61 VLIAEKLGQAGLDLLNE-FANVDCAYN-LSPEELCTKISLCDALIVRSGTKVNRDVFESS 118
+L+ E + + +L V+ L +EL + L +RS T++ +V E+
Sbjct: 3 ILLLENIHPSADELFRAGGIEVERLKGALDEDELIEALKDVHLLGIRSKTQLTEEVLEA- 61
Query: 119 AGRLKVVGRAGVGIDNVDLAAATEFGCLVVNAPTANTVAAAEHGIALLAAMARNVAQADA 178
A +L +G +G + VDL AA + G V NAP +NT + AE I + +AR + +A
Sbjct: 62 APKLLAIGCFCIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGEIIMLARRLPDRNA 121
Query: 179 SVKAGKWQRNKYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPADRARAI 238
+ G W ++ + GKTL ++G+G +GS+++ A+ LGM VI +D +
Sbjct: 122 AAHRGIWNKSATGSHEVRGKTLGIIGYGHIGSQLSVLAEALGMRVIFYD----IAEKLPL 177
Query: 239 G--VDLVSFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVIDEEA 296
G + S +E +A ADF++LH+P TP+T ++ E +MKKG +IN +RG V+D +A
Sbjct: 178 GNARQVSSLEELLAEADFVTLHVPATPSTKNMIGAEEIAQMKKGAILINASRGTVVDIDA 237
Query: 297 LVRALDSGRVAQAALDVFTEEP----PPADSKLVQHERVTVTPHLGASTMEAQEGVAIEI 352
L AL SG +A AA+DVF EEP P S L V +TPH+G ST EAQE + +E+
Sbjct: 238 LAEALRSGHLAGAAVDVFPEEPASNGEPFSSPLQGLPNVILTPHIGGSTEEAQENIGLEV 297
Query: 353 AEAVV 357
A +V
Sbjct: 298 AGKLV 302
|
Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases. PGDH in E. coli and Mycobacterium tuberculosis form tetramers, with subunits containing a Rossmann-fold NAD binding domain. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Length = 304 |
| >gnl|CDD|240656 cd12179, 2-Hacid_dh_14, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains | Back alignment and domain information |
|---|
Score = 215 bits (550), Expect = 3e-65
Identities = 107/304 (35%), Positives = 157/304 (51%), Gaps = 14/304 (4%)
Query: 61 VLIAEKLGQAGLDLLNEFA-NVDCAYNLSPEELCTKISLCDALIVRSGTKVNRDVFESSA 119
+LI +K + +LL VD +S EE+ I D LI+RS ++++ E A
Sbjct: 2 ILIIDKNHPSLTELLEALGFEVDYDPTISREEILAIIPQYDGLIIRSRFPIDKEFIEK-A 60
Query: 120 GRLKVVGRAGVGIDNVDLAAATEFGCLVVNAPTANTVAAAEHGIALLAAMARNVAQADAS 179
LK + RAG G++N+DL A E G + NAP N A EH + +L A+ + +AD
Sbjct: 61 TNLKFIARAGAGLENIDLEYAKEKGIELFNAPEGNRDAVGEHALGMLLALFNKLNRADQE 120
Query: 180 VKAGKWQRNKYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPADRARAIG 239
V+ G W R GV L+GKT+ ++G+G +G A+R G G VIA+D Y A A
Sbjct: 121 VRNGIWDREGNRGVELMGKTVGIIGYGNMGKAFAKRLSGFGCKVIAYDKYKNFGDAYAEQ 180
Query: 240 VDLVSFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVIDEEALVR 299
V L + AD +SLH+PLTP T ++N E KK IN ARG V+ + LV+
Sbjct: 181 VSL---ETLFKEADILSLHIPLTPETRGMVNKEFISSFKKPFYFINTARGKVVVTKDLVK 237
Query: 300 ALDSGRVAQAALDVF--------TEEPPPAD-SKLVQHERVTVTPHLGASTMEAQEGVAI 350
AL SG++ A LDV + P L++ +V +TPH+ T E+ E +A
Sbjct: 238 ALKSGKILGACLDVLEYEKASFESIFNQPEAFEYLIKSPKVILTPHIAGWTFESYEKIAE 297
Query: 351 EIAE 354
+ +
Sbjct: 298 VLVD 301
|
2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 306 |
| >gnl|CDD|240634 cd12157, PTDH, Thermostable Phosphite Dehydrogenase | Back alignment and domain information |
|---|
Score = 208 bits (532), Expect = 2e-62
Identities = 108/319 (33%), Positives = 162/319 (50%), Gaps = 15/319 (4%)
Query: 58 KPTVLIAEKLGQAGLDLLNEFANVDCAYN---LSPEELCTKISLCDALIVRSGTKVNRDV 114
KP V+I K+ L+LL V LS EEL + D L+ +++ D
Sbjct: 1 KPKVVITHKVHPEVLELLKPHCEVISNQTDEPLSREELLRRCKDADGLMAFMPDRIDADF 60
Query: 115 FESSAGRLKVVGRAGVGIDNVDLAAATEFGCLVVNAPTANTVAAAEHGIALLAAMARNVA 174
++ RLK++ A G DN D+ A T G V P T AE I LL + R++
Sbjct: 61 LDA-CPRLKIIACALKGYDNFDVEACTARGIWVTIVPDLLTEPTAELTIGLLIGLGRHIL 119
Query: 175 QADASVKAGKWQ--RNKYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYA-P 231
D V++GK+ R K+ G L GKT+ +LG G +G +ARR G G ++ +DP+
Sbjct: 120 AGDRFVRSGKFGGWRPKFYGTGLDGKTVGILGMGALGRAIARRLSGFGATLLYYDPHPLD 179
Query: 232 ADRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGV 291
+A+ + V DE + ++DF+ L +PLTP T ++N E KMK G ++N RG V
Sbjct: 180 QAEEQALNLRRVELDELLESSDFLVLALPLTPDTLHLINAEALAKMKPGALLVNPCRGSV 239
Query: 292 IDEEALVRALDSGRVAQAALDVFTEEP------PPA--DSKLVQHERVTVTPHLGASTME 343
+DE A+ AL SG + A DVF E P + L QH+R TPH+G++ E
Sbjct: 240 VDEAAVAEALKSGHLGGYAADVFEMEDWARPDRPRSIPQELLDQHDRTVFTPHIGSAVDE 299
Query: 344 AQEGVAIEIAEAVVGALKG 362
+ + +E A ++ AL+G
Sbjct: 300 VRLEIELEAALNILQALQG 318
|
Phosphite dehydrogenase (PTDH), a member of the D-specific 2-hydroxyacid dehydrogenase family, catalyzes the NAD-dependent formation of phosphate from phosphite (hydrogen phosphonate). PTDH has been suggested as a potential enzyme for cofactor regeneration systems. The D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD-binding domain. Length = 318 |
| >gnl|CDD|240663 cd12187, LDH_like_1, D-Lactate and related Dehydrogenase like proteins, NAD-binding and catalytic domains | Back alignment and domain information |
|---|
Score = 208 bits (531), Expect = 3e-62
Identities = 97/257 (37%), Positives = 137/257 (53%), Gaps = 21/257 (8%)
Query: 108 TKVNRDVFESSAGRLKVVGRAGVGIDNVDLAAATEFGCLVVNAPTANTVAAAEHGIALLA 167
++++ +V E RLK++ G D++DL A E G V N P AEH ALL
Sbjct: 51 SRLDAEVLEKLP-RLKLIATRSTGFDHIDLEACRERGIAVCNVPDYGEATVAEHAFALLL 109
Query: 168 AMARNVAQADASVKAGKWQRNKYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHD 227
A++R + +A + G + + G L GKTL V+G G++G VAR A+G GM V+A+D
Sbjct: 110 ALSRKLREAIERTRRGDFSQAGLRGFELAGKTLGVVGTGRIGRRVARIARGFGMKVLAYD 169
Query: 228 PYAPADRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVA 287
+ A +G VS +E + +D ISLH+P TP T ++N E F MK G +IN A
Sbjct: 170 VVPDEELAERLGFRYVSLEELLQESDIISLHVPYTPQTHHLINRENFALMKPGAVLINTA 229
Query: 288 RGGVIDEEALVRALDSGRVAQAALDVFTEEP-------------PP-------ADSKLVQ 327
RG V+D EALVRAL G++A A LDV +E P AD L++
Sbjct: 230 RGAVVDTEALVRALKEGKLAGAGLDVLEQEEVLREEAELFREDVSPEDLKKLLADHALLR 289
Query: 328 HERVTVTPHLGASTMEA 344
V +TPH+ +T EA
Sbjct: 290 KPNVIITPHVAYNTKEA 306
|
D-Lactate dehydrogenase (LDH) catalyzes the interconversion of pyruvate and lactate, and is a member of the 2-hydroxyacid dehydrogenase family. LDH is homologous to D-2-Hydroxyisocaproic acid dehydrogenase(D-HicDH) and shares the 2 domain structure of formate dehydrogenase. D-2-hydroxyisocaproate dehydrogenase-like (HicDH) proteins are NAD-dependent members of the hydroxycarboxylate dehydrogenase family, and share the Rossmann fold typical of many NAD binding proteins. HicDH from Lactobacillus casei forms a monomer and catalyzes the reaction R-CO-COO(-) + NADH + H+ to R-COH-COO(-) + NAD+. D-HicDH, like the structurally distinct L-HicDH, exhibits low side-chain R specificity, accepting a wide range of 2-oxocarboxylic acid side chains. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 329 |
| >gnl|CDD|240644 cd12167, 2-Hacid_dh_8, Putative D-isomer specific 2-hydroxyacid dehydrogenases | Back alignment and domain information |
|---|
Score = 201 bits (514), Expect = 1e-59
Identities = 97/275 (35%), Positives = 142/275 (51%), Gaps = 6/275 (2%)
Query: 72 LDLLNEFANV---DCAYNLSPEELCTKISLCDALIVRSGTKVNRDVFESSAGRLKVVGRA 128
L L A V + + EEL ++ + L+ GT + A RL+ V A
Sbjct: 20 LARLAALAEVLPPTPDADFAAEELRALLAGVEVLVTGWGTPPLDAELLARAPRLRAVVHA 79
Query: 129 GVGIDNVDLAAATEFGCLVVNAPTANTVAAAEHGIALLAAMARNVAQADASVKAGKWQ-- 186
+ + A E G LV +A AN AE +A + R + + A+ +AG+
Sbjct: 80 AGSVRGLVTDAVWERGILVTSAADANAEPVAEFTLAAILLALRRIPRFAAAYRAGRDWGW 139
Query: 187 RNKYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPADRARAIGVDLVSFD 246
+ G L G+T+ ++GFG++G V + G+ V+ +DPY PA A A+GV+LVS D
Sbjct: 140 PTRRGGRGLYGRTVGIVGFGRIGRAVVELLRPFGLRVLVYDPYLPAAEAAALGVELVSLD 199
Query: 247 EAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVIDEEALVRALDSGRV 306
E +A +D +SLH PLTP T +++ M+ G IN ARG ++DE AL+ L SGR+
Sbjct: 200 ELLARSDVVSLHAPLTPETRGMIDARLLALMRDGATFINTARGALVDEAALLAELRSGRL 259
Query: 307 AQAALDVFTEEPPPADSKLVQHERVTVTPHLGAST 341
+AALDV EP P DS L V +TPH+ ST
Sbjct: 260 -RAALDVTDPEPLPPDSPLRTLPNVLLTPHIAGST 293
|
2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 330 |
| >gnl|CDD|236985 PRK11790, PRK11790, D-3-phosphoglycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 203 bits (518), Expect = 2e-59
Identities = 111/327 (33%), Positives = 174/327 (53%), Gaps = 14/327 (4%)
Query: 57 SKPTVLIAEKLGQAGLDLLNE--FANVDC-AYNLSPEELCTKISLCDALIVRSGTKVNRD 113
K L+ E + Q+ +++L + N++ L EEL I + +RS T++ +
Sbjct: 9 DKIKFLLLEGVHQSAVEVLRAAGYTNIEYHKGALDEEELIEAIKDAHFIGIRSRTQLTEE 68
Query: 114 VFESSAGRLKVVGRAGVGIDNVDLAAATEFGCLVVNAPTANTVAAAEHGIALLAAMARNV 173
V + A +L +G +G + VDL AA + G V NAP +NT + AE I + + R +
Sbjct: 69 VLAA-AEKLVAIGCFCIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGEIILLLRGI 127
Query: 174 AQADASVKAGKWQRNKYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYA--P 231
+ +A G W ++ + GKTL ++G+G +G++++ A+ LGM V +D P
Sbjct: 128 PEKNAKAHRGGWNKSAAGSFEVRGKTLGIVGYGHIGTQLSVLAESLGMRVYFYDIEDKLP 187
Query: 232 ADRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGV 291
AR +G S +E +A +D +SLH+P TP+T ++ E MK G +IN +RG V
Sbjct: 188 LGNARQVG----SLEELLAQSDVVSLHVPETPSTKNMIGAEELALMKPGAILINASRGTV 243
Query: 292 IDEEALVRALDSGRVAQAALDVFTEEPPPAD----SKLVQHERVTVTPHLGASTMEAQEG 347
+D +AL AL SG +A AA+DVF EP S L + V +TPH+G ST EAQE
Sbjct: 244 VDIDALADALKSGHLAGAAIDVFPVEPKSNGDPFESPLRGLDNVILTPHIGGSTQEAQEN 303
Query: 348 VAIEIAEAVVGALKGELAATAVNAPMV 374
+ +E+A +V +AVN P V
Sbjct: 304 IGLEVAGKLVKYSDNGSTLSAVNFPEV 330
|
Length = 409 |
| >gnl|CDD|240625 cd05300, 2-Hacid_dh_1, Putative D-isomer specific 2-hydroxyacid dehydrogenase | Back alignment and domain information |
|---|
Score = 199 bits (509), Expect = 4e-59
Identities = 99/294 (33%), Positives = 143/294 (48%), Gaps = 10/294 (3%)
Query: 59 PTVLIAEKLGQAGLDLLNEFANVDCAYNLSPEELCTKISLCDALIVRSGTKVNRDVFESS 118
+L+ L L+ L A ++ EEL +++ D L+ G ++ +
Sbjct: 1 MKILVLSPLDDEHLERLRAAAPGAELRVVTAEELTEELADADVLL---GNPPLPELLPA- 56
Query: 119 AGRLKVVGRAGVGIDNVDLAAATEFGCLVVNAPTANTVAAAEHGIALLAAMARNVAQADA 178
A RL+ + G+D + E ++ NA AE+ + + A AR + +
Sbjct: 57 APRLRWIQSTSAGVDALLFPELLERDVVLTNARGIFGPPIAEYVLGYMLAFARKLPRYAR 116
Query: 179 SVKAGKWQRNKYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIA---HDPYAPADRA 235
+ +WQR V L GKT+ ++G G +G E+ARRAK GM VI AP
Sbjct: 117 NQAERRWQRRGPVR-ELAGKTVLIVGLGDIGREIARRAKAFGMRVIGVRRSGRPAPPVVD 175
Query: 236 RAIGVDLVSFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVIDEE 295
D DE + AD++ +PLTP T + N E F MK G +INV RG V+DE+
Sbjct: 176 EVYTPD--ELDELLPEADYVVNALPLTPETRGLFNAERFAAMKPGAVLINVGRGSVVDED 233
Query: 296 ALVRALDSGRVAQAALDVFTEEPPPADSKLVQHERVTVTPHLGASTMEAQEGVA 349
AL+ AL+SGR+A AALDVF EEP PADS L V +TPH+ + E V
Sbjct: 234 ALIEALESGRIAGAALDVFEEEPLPADSPLWDLPNVIITPHISGDSPSYPERVV 287
|
2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomains but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of formate ion to carbon dioxide with the concomitant reduction of NAD+ to NADH. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of the hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. FDHs are found in all methylotrophic microorganisms in energy production and in the stress responses of plants. Length = 313 |
| >gnl|CDD|240659 cd12183, LDH_like_2, D-Lactate and related Dehydrogenases, NAD-binding and catalytic domains | Back alignment and domain information |
|---|
Score = 195 bits (499), Expect = 2e-57
Identities = 104/270 (38%), Positives = 144/270 (53%), Gaps = 19/270 (7%)
Query: 99 CDALIVRSGTKVNRDVFES-SAGRLKVVGRAGVGIDNVDLAAATEFGCLVVNAPTANTVA 157
DA+ V ++ V E + +K++ G +NVDL AA E G VV P + A
Sbjct: 45 FDAVCVFVNDDLDAPVLEKLAELGVKLIALRCAGFNNVDLKAAKELGITVVRVPAYSPYA 104
Query: 158 AAEHGIALLAAMARNVAQADASVKAGKWQRNKYVGVSLVGKTLAVLGFGKVGSEVARRAK 217
AEH +ALL A+ R + +A V+ G + + +G L GKT+ V+G GK+G AR K
Sbjct: 105 VAEHAVALLLALNRKIHRAYNRVREGNFSLDGLLGFDLHGKTVGVIGTGKIGQAFARILK 164
Query: 218 GLGMHVIAHDPYAPADRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVLNDETFGKM 277
G G V+A+DPY P +GV+ V DE +A +D ISLH PLTP T ++N ET KM
Sbjct: 165 GFGCRVLAYDPY-PNPELAKLGVEYVDLDELLAESDIISLHCPLTPETHHLINAETIAKM 223
Query: 278 KKGVRIINVARGGVIDEEALVRALDSGRVAQAALDVFTEE-----------PPPAD--SK 324
K GV +IN +RGG+ID +AL+ AL SG++ LDV+ EE D ++
Sbjct: 224 KDGVMLINTSRGGLIDTKALIEALKSGKIGGLGLDVYEEEAGLFFEDHSDEIIQDDVLAR 283
Query: 325 LVQHERVTVTPHLGASTMEAQEGVAIEIAE 354
L+ V +T H T EA IAE
Sbjct: 284 LLSFPNVLITGHQAFFTKEALT----NIAE 309
|
D-Lactate dehydrogenase (LDH) catalyzes the interconversion of pyruvate and lactate, and is a member of the 2-hydroxyacid dehydrogenase family. LDH is homologous to D-2-hydroxyisocaproic acid dehydrogenase (D-HicDH) and shares the 2-domain structure of formate dehydrogenase. D-2-hydroxyisocaproate dehydrogenase-like (HicDH) proteins are NAD-dependent members of the hydroxycarboxylate dehydrogenase family, and share the Rossmann fold typical of many NAD binding proteins. HicDH from Lactobacillus casei forms a monomer and catalyzes the reaction R-CO-COO(-) + NADH + H+ to R-COH-COO(-) + NAD+. D-HicDH, like the structurally distinct L-HicDH, exhibits low side-chain R specificity, accepting a wide range of 2-oxocarboxylic acid side chains. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 328 |
| >gnl|CDD|240638 cd12161, GDH_like_1, Putative glycerate dehydrogenase and related proteins of the D-specific 2-hydroxy dehydrogenase family | Back alignment and domain information |
|---|
Score = 193 bits (494), Expect = 6e-57
Identities = 103/288 (35%), Positives = 154/288 (53%), Gaps = 16/288 (5%)
Query: 63 IAEKLGQAGLDLLNEFANVDCAYN---LSPEELCTKISLCDALIVRSGTKVNRDVFESSA 119
+A L + G +EF Y+ EL + D +++ + + +V E+
Sbjct: 18 LAAPLEEQG----HEFV----YYDTKTTDTAELIERSKDADIVMI-ANMPLPGEVIEA-C 67
Query: 120 GRLKVVGRAGVGIDNVDLAAATEFGCLVVNAPTANTVAAAEHGIALLAAMARNVAQADAS 179
LK++ A G+D+VDL A E G V NA +T A AE I L + RN+ DA+
Sbjct: 68 KNLKMISVAFTGVDHVDLEACKERGITVSNAAGYSTEAVAELTIGLAIDLLRNIVPCDAA 127
Query: 180 VKAGKWQRNKYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPADRARAIG 239
V+AG + +G L GKT+ ++G G +G VAR K G V+A+ + A+A+G
Sbjct: 128 VRAGG-TKAGLIGRELAGKTVGIVGTGAIGLRVARLFKAFGCKVLAYSRS-EKEEAKALG 185
Query: 240 VDLVSFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVIDEEALVR 299
++ VS DE +A +D +SLH+PL T ++ E MK+ +IN ARG V+D EAL
Sbjct: 186 IEYVSLDELLAESDIVSLHLPLNDETKGLIGKEKLALMKESAILINTARGPVVDNEALAD 245
Query: 300 ALDSGRVAQAALDVFTEEPP-PADSKLVQHERVTVTPHLGASTMEAQE 346
AL+ G++A A +DVF EPP PAD L+ +TPH+ +T EA E
Sbjct: 246 ALNEGKIAGAGIDVFDMEPPLPADYPLLHAPNTILTPHVAFATEEAME 293
|
This group contains a variety of proteins variously identified as glycerate dehydrogenase (GDH, aka Hydroxypyruvate Reductase) and other enzymes of the 2-hydroxyacid dehydrogenase family. GDH catalyzes the reversible reaction of (R)-glycerate + NAD+ to hydroxypyruvate + NADH + H+. 2-hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 315 |
| >gnl|CDD|240662 cd12186, LDH, D-Lactate dehydrogenase and D-2-Hydroxyisocaproic acid dehydrogenase (D-HicDH), NAD-binding and catalytic domains | Back alignment and domain information |
|---|
Score = 188 bits (479), Expect = 1e-54
Identities = 83/265 (31%), Positives = 130/265 (49%), Gaps = 24/265 (9%)
Query: 99 CDALIVRSGTKVNRDVFES-SAGRLKVVGRAGVGIDNVDLAAATEFGCLVVNAPTANTVA 157
D ++V+ + +V+E + +K + G+D +DL A E G + N P + A
Sbjct: 45 YDGVVVQQTLPYDEEVYEKLAEYGIKQIALRSAGVDMIDLDLAKENGLKITNVPAYSPRA 104
Query: 158 AAEHGIALLAAMARNVAQADASVKAGKWQRNKYVGVSLVGK-----TLAVLGFGKVGSEV 212
AE + + RN + D V G ++ L+G+ T+ ++G G++GS
Sbjct: 105 IAEFAVTQALNLLRNTPEIDRRVAKGDFRWAP----GLIGREIRDLTVGIIGTGRIGSAA 160
Query: 213 ARRAKGLGMHVIAHDPYAPADRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVLNDE 272
A+ KG G VIA+DPY P + S ++ + AD ISLH+PLT ++N E
Sbjct: 161 AKIFKGFGAKVIAYDPY-PNPELEKFLLYYDSLEDLLKQADIISLHVPLTKENHHLINAE 219
Query: 273 TFGKMKKGVRIINVARGGVIDEEALVRALDSGRVAQAALDVFTEE-------------PP 319
F KMK G ++N ARGG++D +AL+ ALDSG++A AALD + E
Sbjct: 220 AFAKMKDGAILVNAARGGLVDTKALIDALDSGKIAGAALDTYENETGYFNKDWSGKEIED 279
Query: 320 PADSKLVQHERVTVTPHLGASTMEA 344
+L+ V +TPH+ T A
Sbjct: 280 EVLKELIAMPNVLITPHIAFYTDTA 304
|
D-Lactate dehydrogenase (LDH) catalyzes the interconversion of pyruvate and lactate, and is a member of the 2-hydroxyacid dehydrogenases family. LDH is homologous to D-2-hydroxyisocaproic acid dehydrogenase(D-HicDH) and shares the 2 domain structure of formate dehydrogenase. D-HicDH is a NAD-dependent member of the hydroxycarboxylate dehydrogenase family, and shares the Rossmann fold typical of many NAD binding proteins. HicDH from Lactobacillus casei forms a monomer and catalyzes the reaction R-CO-COO(-) + NADH + H+ to R-COH-COO(-) + NAD+. D-HicDH, like the structurally distinct L-HicDH, exhibits low side-chain R specificity, accepting a wide range of 2-oxocarboxylic acid side chains. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 329 |
| >gnl|CDD|180588 PRK06487, PRK06487, glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 173 bits (441), Expect = 2e-49
Identities = 94/256 (36%), Positives = 135/256 (52%), Gaps = 15/256 (5%)
Query: 117 SSAGRLKVVGRAGVGIDNVDLAAATEFGCLVVNAPTANTVAAAEHGIALLAAMARNVAQA 176
++A +LK++ A G +NVDLAAA E G V N T + A+H +ALL A+A +
Sbjct: 62 AAAPQLKLILVAATGTNNVDLAAARERGITVCNCQGYGTPSVAQHTLALLLALATRLPDY 121
Query: 177 DASVKAGKWQRNKYVG------VSLVGKTLAVLGFGKVGSEVARRAKGLGMHV-IAHDPY 229
+V AG+WQ++ V L GKTL +LG G++G VAR A+ GM V I P
Sbjct: 122 QQAVAAGRWQQSSQFCLLDFPIVELEGKTLGLLGHGELGGAVARLAEAFGMRVLIGQLP- 180
Query: 230 APADRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARG 289
R D + DE + D ++LH PLT T ++ MK G +IN ARG
Sbjct: 181 -----GRPARPDRLPLDELLPQVDALTLHCPLTEHTRHLIGARELALMKPGALLINTARG 235
Query: 290 GVIDEEALVRALDSGRVAQAALDVFTEEPPPADSKLVQ--HERVTVTPHLGASTMEAQEG 347
G++DE+AL AL SG + AA DV + EPP + L+ R+ VTPH + EA++
Sbjct: 236 GLVDEQALADALRSGHLGGAATDVLSVEPPVNGNPLLAPDIPRLIVTPHSAWGSREARQR 295
Query: 348 VAIEIAEAVVGALKGE 363
+ ++AE G+
Sbjct: 296 IVGQLAENARAFFAGK 311
|
Length = 317 |
| >gnl|CDD|185307 PRK15409, PRK15409, bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional | Back alignment and domain information |
|---|
Score = 173 bits (440), Expect = 3e-49
Identities = 107/325 (32%), Positives = 162/325 (49%), Gaps = 19/325 (5%)
Query: 58 KPTVLIAEKLGQAGLDLLNEFANVDCAYNLSPEELCTKISLCDAL-----IVRSGTKVNR 112
KP+V++ + L L L E V NLSPE T A ++ SG KV+
Sbjct: 2 KPSVILYKALPDDLLQRLEEHFTVTQVANLSPE---TVEQHAAAFAEAEGLLGSGEKVDA 58
Query: 113 DVFESSAGRLKVVGRAGVGIDNVDLAAATEFGCLVVNAPTANTVAAAEHGIALLAAMARN 172
+ E +L+ VG DN D+ A T L+++ PT T A+ +AL+ + AR
Sbjct: 59 ALLEK-MPKLRAASTISVGYDNFDVDALTARKILLMHTPTVLTETVADTLMALVLSTARR 117
Query: 173 VAQADASVKAGKWQRN---KYVGVSLVGKTLAVLGFGKVGSEVARRAK-GLGMHVI--AH 226
V + VKAG+W + + G + KTL ++G G++G +A+RA G M ++ A
Sbjct: 118 VVEVAERVKAGEWTASIGPDWFGTDVHHKTLGIVGMGRIGMALAQRAHFGFNMPILYNAR 177
Query: 227 DPYAPAD-RARAIGVDLVSFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIIN 285
+ A+ R A DL D + +DF+ + +PLT T + E F KMK IN
Sbjct: 178 RHHKEAEERFNARYCDL---DTLLQESDFVCIILPLTDETHHLFGAEQFAKMKSSAIFIN 234
Query: 286 VARGGVIDEEALVRALDSGRVAQAALDVFTEEPPPADSKLVQHERVTVTPHLGASTMEAQ 345
RG V+DE AL+ AL G + A LDVF +EP DS L+ V PH+G++T E +
Sbjct: 235 AGRGPVVDENALIAALQKGEIHAAGLDVFEQEPLSVDSPLLSLPNVVAVPHIGSATHETR 294
Query: 346 EGVAIEIAEAVVGALKGELAATAVN 370
+A + ++ AL+G++ VN
Sbjct: 295 YNMAACAVDNLIDALQGKVEKNCVN 319
|
Length = 323 |
| >gnl|CDD|240642 cd12165, 2-Hacid_dh_6, Putative D-isomer specific 2-hydroxyacid dehydrogenases | Back alignment and domain information |
|---|
Score = 170 bits (432), Expect = 5e-48
Identities = 81/254 (31%), Positives = 119/254 (46%), Gaps = 15/254 (5%)
Query: 121 RLKVVGRAGVGIDNVDLAAATEFGCLVVNAPTANTVAAAEHGIALLAAMARNVAQADASV 180
RLK++ G+D++ L E G +V N N+ A AEH +AL+ A+A+ + + D +
Sbjct: 60 RLKLIQVPSAGVDHLPLERLPE-GVVVANNH-GNSPAVAEHALALILALAKRIVEYDNDL 117
Query: 181 KAGKWQR---NKYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIA--HDPYAPADRA 235
+ G W + L GKT+ +LG+G +G E+AR K GM VI P
Sbjct: 118 RRGIWHGRAGEEPESKELRGKTVGILGYGHIGREIARLLKAFGMRVIGVSRSPKEDEGAD 177
Query: 236 RAIGVDLVSFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVIDEE 295
+ DEA+ AD + + +PLT T ++ MK G ++NV RG V+DEE
Sbjct: 178 FVGTLS--DLDEALEQADVVVVALPLTKQTRGLIGAAELAAMKPGAILVNVGRGPVVDEE 235
Query: 296 ALVRALDSGRVAQAALDVFTEEPPPADSKLVQH------ERVTVTPHLGASTMEAQEGVA 349
AL AL +A AA+DV+ P D V ++PH T E
Sbjct: 236 ALYEALKERPIAGAAIDVWWRYPSRGDPVAPSRYPFHELPNVIMSPHNAGWTEETFRRRI 295
Query: 350 IEIAEAVVGALKGE 363
E AE + L+GE
Sbjct: 296 DEAAENIRRYLRGE 309
|
2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 314 |
| >gnl|CDD|240635 cd12158, ErythrP_dh, D-Erythronate-4-Phosphate Dehydrogenase NAD-binding and catalytic domains | Back alignment and domain information |
|---|
Score = 170 bits (434), Expect = 5e-48
Identities = 88/242 (36%), Positives = 127/242 (52%), Gaps = 31/242 (12%)
Query: 100 DALIVRSGTKVNRDVFESSAGRLKVVGRAGVGIDNVDLAAATEFGCLVVNAPTANTVAAA 159
D L+VRS TKVN + E S ++K VG A +G D++D E G NAP N + A
Sbjct: 38 DVLLVRSVTKVNEALLEGS--KVKFVGTATIGTDHIDTDYLKERGIGFANAPGCNANSVA 95
Query: 160 EHGIALLAAMARNVAQADASVKAGKWQRNKYVGVSLVGKTLAVLGFGKVGSEVARRAKGL 219
E+ ++ L +A QR G SL GKT+ ++G G VGS +ARR + L
Sbjct: 96 EYVLSALLVLA---------------QRQ---GFSLKGKTVGIVGVGNVGSRLARRLEAL 137
Query: 220 GMHVIAHDPYAPADRARAIGVDLVSFDEAIATADFISLHMPLTP----ATSKVLNDETFG 275
GM+V+ DP VS +E +A AD I+LH+PLT T +L+++
Sbjct: 138 GMNVLLCDPPRAE---AEGDPGFVSLEELLAEADIITLHVPLTRDGEHPTYHLLDEDFLA 194
Query: 276 KMKKGVRIINVARGGVIDEEALVRALDSGRVAQAALDVFTEEPPPADSKLVQHERVT-VT 334
+K G +IN +RG VID +AL+ L G+ + LDV+ EP D +L+ ++V T
Sbjct: 195 ALKPGQILINASRGAVIDNQALLALLQRGKDLRVVLDVWENEPEI-DLELL--DKVDIAT 251
Query: 335 PH 336
PH
Sbjct: 252 PH 253
|
D-Erythronate-4-phosphate Dehydrogenase (E. coli gene PdxB), a D-specific 2-hydroxyacid dehydrogenase family member, catalyzes the NAD-dependent oxidation of erythronate-4-phosphate, which is followed by transamination to form 4-hydroxy-L-threonine-4-phosphate within the de novo biosynthesis pathway of vitamin B6. D-Erythronate-4-phosphate dehydrogenase has the common architecture shared with D-isomer specific 2-hydroxyacid dehydrogenases but contains an additional C-terminal dimerization domain in addition to an NAD-binding domain and the "lid" domain. The lid domain corresponds to the catalytic domain of phosphoglycerate dehydrogenase and other proteins of the D-isomer specific 2-hydroxyacid dehydrogenase family, which include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Length = 343 |
| >gnl|CDD|240633 cd12156, HPPR, Hydroxy(phenyl)pyruvate Reductase, D-isomer-specific 2-hydroxyacid-related dehydrogenase | Back alignment and domain information |
|---|
Score = 169 bits (430), Expect = 6e-48
Identities = 80/248 (32%), Positives = 127/248 (51%), Gaps = 12/248 (4%)
Query: 101 ALIVRSGTKVNRDVFESSAGRLKVVGRAGVGIDNVDLAAATEFGCLVVNAPTANTVAAAE 160
A++ T ++ + + L+++ GVG D +DL AA G V N P T A+
Sbjct: 45 AVVTNGETGLSAALIAA-LPALELIASFGVGYDGIDLDAARARGIRVTNTPGVLTDDVAD 103
Query: 161 HGIALLAAMARNVAQADASVKAGKWQRNKY-VGVSLVGKTLAVLGFGKVGSEVARRAKGL 219
+ LL A+ R + AD V+AG+W + + + + GK + ++G G++G +ARR +
Sbjct: 104 LAVGLLLAVLRRIPAADRFVRAGRWPKGAFPLTRKVSGKRVGIVGLGRIGRAIARRLEAF 163
Query: 220 GMHVIAHDPYAPADRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVLNDETFGKM-K 278
GM + H D L+ +D + + P PAT ++N E +
Sbjct: 164 GMEIAYHGRRPKPDVPYRYYASLLELAAE---SDVLVVACPGGPATRHLVNAEVLEALGP 220
Query: 279 KGVRIINVARGGVIDEEALVRALDSGRVAQAALDVFTEEP--PPADSKLVQHERVTVTPH 336
GV ++NVARG V+DE AL+ AL GR+A A LDVF EP P A L+ + V +TPH
Sbjct: 221 DGV-LVNVARGSVVDEAALIAALQEGRIAGAGLDVFENEPNVPAA---LLDLDNVVLTPH 276
Query: 337 LGASTMEA 344
+ ++T+E
Sbjct: 277 IASATVET 284
|
Hydroxy(phenyl)pyruvate reductase (HPPR) catalyzes the NADP-dependent reduction of hydroxyphenylpyruvates, hydroxypyruvate, or pyruvate to its respective lactate. HPPR acts as a dimer and is related to D-isomer-specific 2-hydroxyacid dehydrogenases, a superfamily that includes groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 301 |
| >gnl|CDD|240632 cd12155, PGDH_1, Phosphoglycerate Dehydrogenase, 2-hydroxyacid dehydrogenase family | Back alignment and domain information |
|---|
Score = 168 bits (428), Expect = 2e-47
Identities = 75/229 (32%), Positives = 117/229 (51%), Gaps = 13/229 (5%)
Query: 114 VFESSAGRLKVVGRAGVGIDNVDLAAATEFGCLVVNAPTANTVAAAEHGIALLAAMARNV 173
+ + LK + G+D + L + G L+ N +++ AE + + + + +
Sbjct: 53 LDLAKMKNLKWIQLYSAGVDYLPLEYIKKKGILLTNNSGIHSIPIAEWIVGYILEIYKGL 112
Query: 174 AQADASVKAGKWQRNKYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIA-----HD- 227
+A + K KW+ + + L GKT+ LG G +G E+A+R K GM VI D
Sbjct: 113 KKAYKNQKEKKWKMDS-SLLELYGKTILFLGTGSIGQEIAKRLKAFGMKVIGVNTSGRDV 171
Query: 228 PYAPADRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVA 287
Y D+ + +L DE + AD + +PLT T + ++ F +MKKG INV
Sbjct: 172 EYF--DKCYPLE-EL---DEVLKEADIVVNVLPLTEETHHLFDEAFFEQMKKGALFINVG 225
Query: 288 RGGVIDEEALVRALDSGRVAQAALDVFTEEPPPADSKLVQHERVTVTPH 336
RG +DE+AL+ AL + ++ AALDVF EEP P DS L + V +TPH
Sbjct: 226 RGPSVDEDALIEALKNKQIRGAALDVFEEEPLPKDSPLWDLDNVLITPH 274
|
Phosphoglycerate Dehydrogenase (PGDH) catalyzes the NAD-dependent conversion of 3-phosphoglycerate into 3-phosphohydroxypyruvate, which is the first step in serine biosynthesis. Over-expression of PGDH has been implicated as supporting proliferation of certain breast cancers, while PGDH deficiency is linked to defects in mammalian central nervous system development. PGDH is a member of the 2-hydroxyacid dehydrogenase family, enzymes that catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 314 |
| >gnl|CDD|240627 cd05302, FDH, NAD-dependent Formate Dehydrogenase (FDH) | Back alignment and domain information |
|---|
Score = 163 bits (414), Expect = 3e-45
Identities = 76/240 (31%), Positives = 123/240 (51%), Gaps = 10/240 (4%)
Query: 117 SSAGRLKVVGRAGVGIDNVDLAAATEFGCLVVNAPTANTVAAAEHGIALLAAMARNVAQA 176
+ A LK+ AG+G D+VDL AA + G V +N V+ AEH + ++ + RN
Sbjct: 80 AKAKNLKLALTAGIGSDHVDLQAANDRGITVAEVTGSNVVSVAEHVVMMILILVRNYVPG 139
Query: 177 DASVKAGKWQ-----RNKYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYA- 230
G W + Y L GKT+ +G G++G V RR K +H++ +D +
Sbjct: 140 HEQAIEGGWNVADVVKRAY---DLEGKTVGTVGAGRIGLRVLRRLKPFDVHLLYYDRHRL 196
Query: 231 PADRARAIGVDLV-SFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARG 289
P + + +G+ ++ ++ D ++++ PL P T + N E KMKKG ++N ARG
Sbjct: 197 PEEVEKELGLTRHADLEDMVSKCDVVTINCPLHPETEGLFNKELLSKMKKGAYLVNTARG 256
Query: 290 GVIDEEALVRALDSGRVAQAALDVFTEEPPPADSKLVQHERVTVTPHLGASTMEAQEGVA 349
+ D EA+ AL+SG +A A DV+ +P P D +TPH+ +T++AQ A
Sbjct: 257 KICDREAVAEALESGHLAGYAGDVWFPQPAPKDHPWRTMPNNAMTPHISGTTLDAQARYA 316
|
NAD-dependent formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of a formate anion to carbon dioxide coupled with the reduction of NAD+ to NADH. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxy acid dehydrogenase family have 2 highly similar subdomains of the alpha/beta form, with NAD binding occurring in the cleft between subdomains. NAD contacts are primarily to the Rossmann-fold NAD-binding domain which is inserted within the linear sequence of the more diverse flavodoxin-like catalytic subdomain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of the hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. FDHs are found in all methylotrophic microorganisms in energy production from C1 compounds such as methanol, and in the stress responses of plants. NAD-dependent FDH is useful in cofactor regeneration in asymmetrical biocatalytic reduction processes, where FDH irreversibly oxidizes formate to carbon dioxide, while reducing the oxidized form of the cofactor to the reduced form. Length = 348 |
| >gnl|CDD|181414 PRK08410, PRK08410, 2-hydroxyacid dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 160 bits (406), Expect = 2e-44
Identities = 90/317 (28%), Positives = 164/317 (51%), Gaps = 19/317 (5%)
Query: 58 KPTVLIAEKLGQAGLDLLNEFANVDCAYNL-SPEELCTKISLCDA-LIVRSGTKVNRDVF 115
K +L A+ LG L + EF + Y SPEE+ +I DA +I+ + ++++V
Sbjct: 2 KIVILDAKTLGDKDLSVFEEFGDFQ-IYPTTSPEEVIERIK--DANIIITNKVVIDKEVL 58
Query: 116 ESSAGRLKVVGRAGVGIDNVDLAAATEFGCLVVNAPTANTVAAAEHGIALLAAMARNVAQ 175
S LK++ G +NVD+ A + G V N +T + A+H A+L ++ +
Sbjct: 59 -SQLPNLKLICITATGTNNVDIEYAKKKGIAVKNVAGYSTESVAQHTFAMLLSLLGRINY 117
Query: 176 ADASVKAGKWQRNK-YVGVS-----LVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPY 229
D VK+G++ + + +S + GK ++G G +G VA+ A+ G V+ Y
Sbjct: 118 YDRYVKSGEYSESPIFTHISRPLGEIKGKKWGIIGLGTIGKRVAKIAQAFGAKVVY---Y 174
Query: 230 APADRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARG 289
+ + + + + VS +E + T+D IS+H PL T ++ + +K G +INV RG
Sbjct: 175 STSGKNKNEEYERVSLEELLKTSDIISIHAPLNEKTKNLIAYKELKLLKDGAILINVGRG 234
Query: 290 GVIDEEALVRALDSGRVAQAALDVFTEEPPPADSKLVQ---HERVTVTPHLGASTMEAQE 346
G+++E+ L +ALD + A LDV +EP + L+ E++ +TPH+ ++ EA++
Sbjct: 235 GIVNEKDLAKALDEKDIY-AGLDVLEKEPMEKNHPLLSIKNKEKLLITPHIAWASKEARK 293
Query: 347 GVAIEIAEAVVGALKGE 363
+ ++ E + L+G
Sbjct: 294 TLIEKVKENIKDFLEGG 310
|
Length = 311 |
| >gnl|CDD|240661 cd12185, HGDH_LDH_like, Putative Lactate dehydrogenase and (R)-2-Hydroxyglutarate Dehydrogenase-like proteins, NAD-binding and catalytic domains | Back alignment and domain information |
|---|
Score = 158 bits (403), Expect = 7e-44
Identities = 79/261 (30%), Positives = 124/261 (47%), Gaps = 19/261 (7%)
Query: 99 CDALIVRSGTKVNRDVFES-SAGRLKVVGRAGVGIDNVDLAAATEFGCLVVNAPTA-NTV 156
D + + +K++ ++ E +K + +G D++DL AA E G V N + N+V
Sbjct: 45 YDGISILGKSKISAELLEKLKEAGVKYISTRSIGYDHIDLDAAKELGIKVSNVTYSPNSV 104
Query: 157 AAAEHGIALLAAMARNVAQADASVKAGKWQRNKYVGVSLVGKTLAVLGFGKVGSEVARRA 216
A ++ + L+ R Q + + G L T+ V+G G++G V +
Sbjct: 105 A--DYTVMLMLMALRKYKQIMKRAEVNDYSLGGLQGRELRNLTVGVIGTGRIGQAVIKNL 162
Query: 217 KGLGMHVIAHDPYAPADRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVLNDETFGK 276
G G ++A+DPY P + + + V D +D I+LH PLT T ++N E+ K
Sbjct: 163 SGFGCKILAYDPY-PNEEVK-KYAEYVDLDTLYKESDIITLHTPLTEETYHLINKESIAK 220
Query: 277 MKKGVRIINVARGGVIDEEALVRALDSGRVAQAALDVFTEE-------------PPPADS 323
MK GV IIN ARG +ID EAL+ L+SG++ AALDV E +
Sbjct: 221 MKDGVIIINTARGELIDTEALIEGLESGKIGGAALDVIEGEDGIYYNDRKGDILSNRELA 280
Query: 324 KLVQHERVTVTPHLGASTMEA 344
L V +TPH+ T +A
Sbjct: 281 ILRSFPNVILTPHMAFYTDQA 301
|
This group contains various putative dehydrogenases related to D-lactate dehydrogenase (LDH), (R)-2-hydroxyglutarate dehydrogenase (HGDH), and related enzymes, members of the 2-hydroxyacid dehydrogenases family. LDH catalyzes the interconversion of pyruvate and lactate, and HGDH catalyzes the NAD-dependent reduction of 2-oxoglutarate to (R)-2-hydroxyglutarate. Despite often low sequence identity within this 2-hydroxyacid dehydrogenase family, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 322 |
| >gnl|CDD|235890 PRK06932, PRK06932, glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 158 bits (400), Expect = 1e-43
Identities = 83/260 (31%), Positives = 131/260 (50%), Gaps = 16/260 (6%)
Query: 88 SPEELCTKISLCDALIVRSGTKVNRDVFESSAGRLKVVGRAGVGIDNVDLAAATEFGCLV 147
S E+ + D +++ S R+ + +LK++ G +NVDL AA E G V
Sbjct: 34 SAEQTIERAKDAD-IVITSKVLFTRETL-AQLPKLKLIAITATGTNNVDLVAAKELGIAV 91
Query: 148 VNAPTANTVAAAEHGIALLAAMARNVAQADASVKAGKWQRNK------YVGVSLVGKTLA 201
N ++ EH + ++ A+ ++ + +W K Y + G TL
Sbjct: 92 KNVTGYSSTTVPEHVLGMIFALKHSLMGWYRDQLSDRWATCKQFCYFDYPITDVRGSTLG 151
Query: 202 VLGFGKVGSEVARRAKGLGMHVIAHDPYAPADRARAIGVDLVSFDEAIATADFISLHMPL 261
V G G +G+EV R A+ LGM V+ YA A F+E + AD ++LH PL
Sbjct: 152 VFGKGCLGTEVGRLAQALGMKVL----YAEHKGASVCREGYTPFEEVLKQADIVTLHCPL 207
Query: 262 TPATSKVLNDETFGKMKKGVRIINVARGGVIDEEALVRALDSGRVAQAALDVFTEEPPPA 321
T T ++N ET MK +IN RG ++DE+AL+ AL++G++A AALDV +EPP
Sbjct: 208 TETTQNLINAETLALMKPTAFLINTGRGPLVDEQALLDALENGKIAGAALDVLVKEPPEK 267
Query: 322 DSKLVQHER----VTVTPHL 337
D+ L+Q + + +TPH+
Sbjct: 268 DNPLIQAAKRLPNLLITPHI 287
|
Length = 314 |
| >gnl|CDD|215501 PLN02928, PLN02928, oxidoreductase family protein | Back alignment and domain information |
|---|
Score = 157 bits (400), Expect = 3e-43
Identities = 80/277 (28%), Positives = 141/277 (50%), Gaps = 24/277 (8%)
Query: 81 VDCAYNLSPEELCTKISLCDALIVRSGTKVNRDVFESSAGRLKVVGRAGVGIDNVDLAAA 140
A P+ I+ D + + +++ D+ + A ++K++ + GVG++ VD+ AA
Sbjct: 48 DAVAREDVPDV----IANYDICVPKM-MRLDADII-ARASQMKLIMQFGVGLEGVDVDAA 101
Query: 141 TEFGCLVVNAP---TANTVAAAEHGIALLAAMARNVAQADASVKAGKWQRNKYVGVSLVG 197
T+ G V P T N + AE I L+ + R + S+KA + + +G +L G
Sbjct: 102 TKHGIKVARIPSEGTGNAASCAEMAIYLMLGLLRKQNEMQISLKARRL--GEPIGDTLFG 159
Query: 198 KTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPADRARAIGVDLVSFD----------- 246
KT+ +LG+G +G E+A+R + G+ ++A ++ + + D
Sbjct: 160 KTVFILGYGAIGIELAKRLRPFGVKLLATRRSWTSEPEDGLLIPNGDVDDLVDEKGGHED 219
Query: 247 --EAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVIDEEALVRALDSG 304
E AD + L LT T+ ++NDE MKKG ++N+ARGG++D +A++ AL+SG
Sbjct: 220 IYEFAGEADIVVLCCTLTKETAGIVNDEFLSSMKKGALLVNIARGGLLDYDAVLAALESG 279
Query: 305 RVAQAALDVFTEEPPPADSKLVQHERVTVTPHLGAST 341
+ A+DV EP D +++H V +TPH+ T
Sbjct: 280 HLGGLAIDVAWSEPFDPDDPILKHPNVIITPHVAGVT 316
|
Length = 347 |
| >gnl|CDD|181041 PRK07574, PRK07574, formate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 157 bits (400), Expect = 8e-43
Identities = 79/231 (34%), Positives = 128/231 (55%), Gaps = 4/231 (1%)
Query: 119 AGRLKVVGRAGVGIDNVDLAAATEFGCLVVNAPTANTVAAAEHGIALLAAMARNVAQADA 178
A LK+ AG+G D+VDL AA+E G V +N+++ AEH + ++ A+ RN +
Sbjct: 112 APNLKLAITAGIGSDHVDLQAASEHGITVAEVTGSNSISVAEHVVMMILALVRNYEPSHR 171
Query: 179 SVKAGKWQRNKYVGVS--LVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPY-APADRA 235
G W V S L G T+ ++G G++G V RR K + + D + P +
Sbjct: 172 QAVEGGWNIADCVSRSYDLEGMTVGIVGAGRIGLAVLRRLKPFDVKLHYTDRHRLPEEVE 231
Query: 236 RAIGVDL-VSFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVIDE 294
+ +G+ VSFD ++ D +++H PL P T + + + +MK+G ++N ARG ++D
Sbjct: 232 QELGLTYHVSFDSLVSVCDVVTIHCPLHPETEHLFDADVLSRMKRGSYLVNTARGKIVDR 291
Query: 295 EALVRALDSGRVAQAALDVFTEEPPPADSKLVQHERVTVTPHLGASTMEAQ 345
+A+VRAL+SG +A A DV+ +P PAD R +TPH+ +T+ AQ
Sbjct: 292 DAVVRALESGHLAGYAGDVWFPQPAPADHPWRTMPRNGMTPHISGTTLSAQ 342
|
Length = 385 |
| >gnl|CDD|240657 cd12180, 2-Hacid_dh_15, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains | Back alignment and domain information |
|---|
Score = 150 bits (380), Expect = 8e-41
Identities = 87/242 (35%), Positives = 122/242 (50%), Gaps = 20/242 (8%)
Query: 120 GRLKVVGRAGVGIDNV--DLAAATEFGCLVVNAPTANTVAAAEHGIALLAAMARNVAQAD 177
GRL+ V GID L G +V A A AE +A + A A+ + +
Sbjct: 63 GRLRWVQLVSSGIDYYPDWLFE----GPVVTCARGVAAEAIAEFVLAAILAAAKRLP--E 116
Query: 178 ASVK-AGKWQRNKYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPADRAR 236
VK A +W+R SL G TL ++GFG +G +ARRA LGM V+A R
Sbjct: 117 IWVKGAEQWRREP--LGSLAGSTLGIVGFGAIGQALARRALALGMRVLA-----LRRSGR 169
Query: 237 AIGVDLVS----FDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVI 292
V V E A +D + L PLTP T ++N + + K G+ +IN+ARGG++
Sbjct: 170 PSDVPGVEAAADLAELFARSDHLVLAAPLTPETRHLINADVLAQAKPGLHLINIARGGLV 229
Query: 293 DEEALVRALDSGRVAQAALDVFTEEPPPADSKLVQHERVTVTPHLGASTMEAQEGVAIEI 352
D+EAL+ ALDSGR++ A+LDV EP P L H RV ++PH A + + +A
Sbjct: 230 DQEALLEALDSGRISLASLDVTDPEPLPEGHPLYTHPRVRLSPHTSAIAPDGRRNLADRF 289
Query: 353 AE 354
E
Sbjct: 290 LE 291
|
2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 308 |
| >gnl|CDD|240660 cd12184, HGDH_like, (R)-2-Hydroxyglutarate Dehydrogenase and related dehydrogenases, NAD-binding and catalytic domains | Back alignment and domain information |
|---|
Score = 149 bits (378), Expect = 3e-40
Identities = 92/272 (33%), Positives = 132/272 (48%), Gaps = 37/272 (13%)
Query: 99 CDALIVRSGTKVNRDVFESSAGR-LKVVGRAGVGIDNVDLAAATEFGCLVVNAPTANTVA 157
DA+IVR +++ E +K V VG +++DL AA E G + P+ + A
Sbjct: 45 HDAVIVRGNCFADKENLEIYKEYGIKYVFTRTVGFNHIDLEAAKELGFKMARVPSYSPNA 104
Query: 158 AAE----HGIALL---AAMARNVAQADASVKA---GKWQRNKYVGVSLVGKTLAVLGFGK 207
AE + L A A A + V K RN VG+ +G G+
Sbjct: 105 IAELAFTLAMTLSRHTAYTASRTANKNFKVDPFMFSKEIRNSTVGI---------IGTGR 155
Query: 208 VGSEVARRAKGLGMHVIAHDPYAPADRARAIGVDLVSFDEAIATADFISLHMPLTPATS- 266
+G A+ KGLG VI +D Y P+D A+ + V VS DE + +D ISLH+P +
Sbjct: 156 IGLTAAKLFKGLGAKVIGYDIY-PSDAAKDV-VTFVSLDELLKKSDIISLHVPYIKGKND 213
Query: 267 KVLNDETFGKMKKGVRIINVARGGVIDEEALVRALDSGRVAQAALDVFTEE--------- 317
K++N E KMK G +IN ARG + DEEA++ AL+SG++A DV E
Sbjct: 214 KLINKEFISKMKDGAILINTARGELQDEEAILEALESGKLAGFGTDVLNNEKEIFFKDFD 273
Query: 318 ----PPPADSKLVQ-HERVTVTPHLGASTMEA 344
P KL+ + RV +TPH+G+ T EA
Sbjct: 274 GDKIEDPVVEKLLDLYPRVLLTPHIGSYTDEA 305
|
(R)-2-hydroxyglutarate dehydrogenase (HGDH) catalyzes the NAD-dependent reduction of 2-oxoglutarate to (R)-2-hydroxyglutarate. HGDH is a member of the D-2-hydroxyacid NAD(+)-dependent dehydrogenase family; these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 330 |
| >gnl|CDD|240641 cd12164, GDH_like_2, Putative glycerate dehydrogenase and related proteins of the D-specific 2-hydroxy dehydrogenase family | Back alignment and domain information |
|---|
Score = 138 bits (349), Expect = 2e-36
Identities = 81/254 (31%), Positives = 120/254 (47%), Gaps = 26/254 (10%)
Query: 121 RLKVVGRAGVGIDNVDLAAATEFG---CLVVNAPTANTVAAAEHGIALLAAMA--RNVAQ 175
LK + G G+D++ LA +V+ A +A L A + R++ +
Sbjct: 58 NLKAIFSLGAGVDHL-LADPDLPDVPIVRLVDPGLAQGMAEY----VLAAVLRLHRDMDR 112
Query: 176 ADASVKAGKWQRNKYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPADRA 235
A + G W+ + + VLG G++G+ VARR LG V +
Sbjct: 113 YAAQQRRGVWKPLPQRPAAER--RVGVLGLGELGAAVARRLAALGFPVSGW-----SRSP 165
Query: 236 RAI-GVDLVS----FDEAIATADF-ISLHMPLTPATSKVLNDETFGKMKKGVRIINVARG 289
+ I GV D +A D + L +PLTP T +LN E ++ +G +INV RG
Sbjct: 166 KDIEGVTCFHGEEGLDAFLAQTDILVCL-LPLTPETRGILNAELLARLPRGAALINVGRG 224
Query: 290 GVIDEEALVRALDSGRVAQAALDVFTEEPPPADSKLVQHERVTVTPHLGASTMEAQEGVA 349
+ E L+ ALDSG ++ A LDVF +EP PAD L +H RVTVTPH+ A+ + A
Sbjct: 225 PHLVEADLLAALDSGHLSGAVLDVFEQEPLPADHPLWRHPRVTVTPHI-AAITDPDSAAA 283
Query: 350 IEIAEAVVGALKGE 363
+AE + GE
Sbjct: 284 Q-VAENIRRLEAGE 296
|
This group contains a variety of proteins variously identified as glycerate dehydrogenase (GDH, also known as hydroxypyruvate reductase) and other enzymes of the 2-hydroxyacid dehydrogenase family. GDH catalyzes the reversible reaction of (R)-glycerate + NAD+ to hydroxypyruvate + NADH + H+. 2-hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 306 |
| >gnl|CDD|166874 PRK00257, PRK00257, erythronate-4-phosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 131 bits (331), Expect = 2e-33
Identities = 93/303 (30%), Positives = 135/303 (44%), Gaps = 35/303 (11%)
Query: 100 DALIVRSGTKVNRDVFESSAGRLKVVGRAGVGIDNVDLAAATEFGCLVVNAPTANTVAAA 159
D L+VRS T+V+R + E S R++ VG +G D++DL E G +AP N
Sbjct: 39 DVLLVRSVTRVDRALLEGS--RVRFVGTCTIGTDHLDLDYFAEAGITWSSAPGCNARGVV 96
Query: 160 EHGIALLAAMARNVAQADASVKAGKWQRNKYVGVSLVGKTLAVLGFGKVGSEVARRAKGL 219
++ + L +A GV L +T V+G G VG + R +GL
Sbjct: 97 DYVLGSLLTLAERE------------------GVDLAERTYGVVGAGHVGGRLVRVLRGL 138
Query: 220 GMHVIAHDPYAPADRARAIGVDLVSFDEAIATADFISLHMPLTP----ATSKVLNDETFG 275
G V+ DP P A G D VS + + D ISLH PLT T +L++
Sbjct: 139 GWKVLVCDP--PRQEAEGDG-DFVSLERILEECDVISLHTPLTKEGEHPTRHLLDEAFLA 195
Query: 276 KMKKGVRIINVARGGVIDEEALVRALDSGRVAQAALDVFTEEPPPADSKLVQHERVTVTP 335
++ G +IN +RG V+D +AL AL SG A LDV+ E P D +L + TP
Sbjct: 196 SLRPGAWLINASRGAVVDNQALREALLSGEDLDAVLDVWEGE-PQIDLELADLCTIA-TP 253
Query: 336 HL-GASTMEAQEGVAIEIAEAVVGALKGELAATAVNAPMVPAEVL--TELKPFVELAEKL 392
H+ G S G A +I +A+ + A ++P L +L + A L
Sbjct: 254 HIAGYSLDGKARGTA-QIYQALCRFFG--IPARVSLTDLLPPPWLAQIDLDASADPAWAL 310
Query: 393 GRL 395
L
Sbjct: 311 ATL 313
|
Length = 381 |
| >gnl|CDD|181499 PRK08605, PRK08605, D-lactate dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 129 bits (325), Expect = 4e-33
Identities = 78/265 (29%), Positives = 132/265 (49%), Gaps = 18/265 (6%)
Query: 122 LKVVGRAGVGIDNVDLAAATEFGCLVVNAPTANTVAAAEHGIALLAAMARNVAQADASVK 181
+K + + G D DL AT++ ++ N P+ + + AE + + R+ Q V+
Sbjct: 70 IKQIAQRSAGFDTYDLELATKYNLIISNVPSYSPESIAEFTVTQAINLVRHFNQIQTKVR 129
Query: 182 AG--KWQRNKYVGVSLVGKTLAVLGFGKVGSEVAR-RAKGLGMHVIAHDPYAPADRARAI 238
+W+ + S+ +AV+G G++G VA+ AKG G V+A+DP+ P +A
Sbjct: 130 EHDFRWEPP-ILSRSIKDLKVAVIGTGRIGLAVAKIFAKGYGSDVVAYDPF-PNAKAATY 187
Query: 239 GVDLVSFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVIDEEALV 298
+ +EA+ AD ++LHMP T + N + F KKG +N ARG ++D +AL+
Sbjct: 188 VDYKDTIEEAVEGADIVTLHMPATKYNHYLFNADLFKHFKKGAVFVNCARGSLVDTKALL 247
Query: 299 RALDSGRVAQAALDVFTEEPP--PADSK-----------LVQHERVTVTPHLGASTMEAQ 345
ALD+G + AALD + E P P+D + L+ E V +TPH+ T A
Sbjct: 248 DALDNGLIKGAALDTYEFERPLFPSDQRGQTINDPLLESLINREDVILTPHIAFYTDAAV 307
Query: 346 EGVAIEIAEAVVGALKGELAATAVN 370
+ + ++ +A + L+ VN
Sbjct: 308 KNLIVDALDATLEVLQTGTTRLRVN 332
|
Length = 332 |
| >gnl|CDD|177941 PLN02306, PLN02306, hydroxypyruvate reductase | Back alignment and domain information |
|---|
Score = 128 bits (322), Expect = 4e-32
Identities = 89/254 (35%), Positives = 129/254 (50%), Gaps = 23/254 (9%)
Query: 130 VGIDNVDLAAATEFGCLVVNAPTANTVAAAEHGIALLAAMARNVAQADASVKAGK---WQ 186
VG +NVD+ AA ++G V N P T AE +L A AR + +AD ++AG W
Sbjct: 95 VGYNNVDVEAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYEGWL 154
Query: 187 RNKYVGVSLVGKTLAVLGFGKVGSEVARR-AKGLGMHVIAHDPYAPADR----ARAIGVD 241
+ +VG L G+T+ V+G G++GS AR +G M++I +D Y + R A G
Sbjct: 155 PHLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLY-QSTRLEKFVTAYGQF 213
Query: 242 L-------------VSFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVAR 288
L S +E + AD ISLH L T ++N E MKK ++N +R
Sbjct: 214 LKANGEQPVTWKRASSMEEVLREADVISLHPVLDKTTYHLINKERLALMKKEAVLVNASR 273
Query: 289 GGVIDEEALVRALDSGRVAQAALDVFTEEPPPADSKLVQHERVTVTPHLGASTMEAQEGV 348
G VIDE ALV L + + + LDVF +E P L + V PH+ +++ +EG+
Sbjct: 274 GPVIDEVALVEHLKANPMFRVGLDVFEDE-PYMKPGLADMKNAVVVPHIASASKWTREGM 332
Query: 349 AIEIAEAVVGALKG 362
A A V+G LKG
Sbjct: 333 ATLAALNVLGKLKG 346
|
Length = 386 |
| >gnl|CDD|178684 PLN03139, PLN03139, formate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 126 bits (318), Expect = 1e-31
Identities = 73/249 (29%), Positives = 118/249 (47%), Gaps = 4/249 (1%)
Query: 119 AGRLKVVGRAGVGIDNVDLAAATEFGCLVVNAPTANTVAAAEHGIALLAAMARNVAQADA 178
A L+++ AG+G D++DL AA G V +N V+ AE + + + RN
Sbjct: 119 AKNLELLLTAGIGSDHIDLPAAAAAGLTVAEVTGSNVVSVAEDELMRILILLRNFLPGYH 178
Query: 179 SVKAGKWQRNK--YVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYA-PADRA 235
V +G+W Y L GKT+ +G G++G + +R K +++ HD +
Sbjct: 179 QVVSGEWNVAGIAYRAYDLEGKTVGTVGAGRIGRLLLQRLKPFNCNLLYHDRLKMDPELE 238
Query: 236 RAIGVDLVS-FDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVIDE 294
+ G D + D + ++ PLT T + N E KMKKGV I+N ARG ++D
Sbjct: 239 KETGAKFEEDLDAMLPKCDVVVINTPLTEKTRGMFNKERIAKMKKGVLIVNNARGAIMDT 298
Query: 295 EALVRALDSGRVAQAALDVFTEEPPPADSKLVQHERVTVTPHLGASTMEAQEGVAIEIAE 354
+A+ A SG + DV+ +P P D +TPH+ +T++AQ A + +
Sbjct: 299 QAVADACSSGHIGGYGGDVWYPQPAPKDHPWRYMPNHAMTPHISGTTIDAQLRYAAGVKD 358
Query: 355 AVVGALKGE 363
+ KGE
Sbjct: 359 MLDRYFKGE 367
|
Length = 386 |
| >gnl|CDD|240643 cd12166, 2-Hacid_dh_7, Putative D-isomer specific 2-hydroxyacid dehydrogenases | Back alignment and domain information |
|---|
Score = 123 bits (311), Expect = 2e-31
Identities = 73/224 (32%), Positives = 109/224 (48%), Gaps = 14/224 (6%)
Query: 121 RLKVVGRAGVGIDNVDLAAATEFGCLVVNAPTANTVAAAEHGIALLAAMARNVAQADASV 180
RL+VV G D V L E G + NA + + AE +AL+ A R + + +
Sbjct: 60 RLRVVQTLSAGYDGV-LPLLPE-GVTLCNARGVHDASTAELAVALILASLRGLPRFVRAQ 117
Query: 181 KAGKWQRNKYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPADRARAIGV 240
G+W+ SL + + ++G+G +G + RR + V A AR G
Sbjct: 118 ARGRWEPR--RTPSLADRRVLIVGYGSIGRAIERRLAPFEVRVTR-----VARTARP-GE 169
Query: 241 DLVSFDEA---IATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVIDEEAL 297
+ DE + AD + L +PLT T +++ E +M G ++NVARG V+D +AL
Sbjct: 170 QVHGIDELPALLPEADVVVLIVPLTDETRGLVDAEFLARMPDGALLVNVARGPVVDTDAL 229
Query: 298 VRALDSGRVAQAALDVFTEEPPPADSKLVQHERVTVTPHLGAST 341
V L SGR+ +AALDV EP P L V +TPH+G +T
Sbjct: 230 VAELASGRL-RAALDVTDPEPLPPGHPLWSAPGVLITPHVGGAT 272
|
2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 300 |
| >gnl|CDD|240636 cd12159, 2-Hacid_dh_2, Putative D-isomer specific 2-hydroxyacid dehydrogenases | Back alignment and domain information |
|---|
Score = 120 bits (303), Expect = 3e-30
Identities = 75/225 (33%), Positives = 100/225 (44%), Gaps = 15/225 (6%)
Query: 153 ANTVAAAEHGIALLAAMARNVAQADASVKAGKWQRNKYV--GVSLVGKTLAVLGFGKVGS 210
A TVA EH +ALL A R Q A +A W + L G T+A++G G +G
Sbjct: 84 AETVA--EHALALLLAGLR---QLPARARATTWDPAEEDDLVTLLRGSTVAIVGAGGIGR 138
Query: 211 EVARRAKGLGMHVIA----HDPYAPADRARAIGVDLVSFDEAIATADFISLHMPLTPATS 266
+ G VIA P AD V DE AD + L PLTP T
Sbjct: 139 ALIPLLAPFGAKVIAVNRSGRPVEGADET----VPADRLDEVWPDADHVVLAAPLTPETR 194
Query: 267 KVLNDETFGKMKKGVRIINVARGGVIDEEALVRALDSGRVAQAALDVFTEEPPPADSKLV 326
+++ MK ++NVARG ++D +ALV AL SG +A AALDV EP P L
Sbjct: 195 HLVDAAALAAMKPHAWLVNVARGPLVDTDALVDALRSGEIAGAALDVTDPEPLPDGHPLW 254
Query: 327 QHERVTVTPHLGASTMEAQEGVAIEIAEAVVGALKGELAATAVNA 371
+TPH+ + + +A +AE V GE V+
Sbjct: 255 SLPNALITPHVANTPEVIRPLLAERVAENVRAFAAGEPLLGVVDP 299
|
2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 303 |
| >gnl|CDD|183550 PRK12480, PRK12480, D-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 112 bits (281), Expect = 4e-27
Identities = 66/242 (27%), Positives = 115/242 (47%), Gaps = 26/242 (10%)
Query: 122 LKVVGRAGVGIDNVDLAAATEFGCLVVNAPTANTVAAAEHGIALLAAMARNVAQADASVK 181
+K + + G D DL A + ++ N P+ + AE+ +++ + R + V+
Sbjct: 70 IKQIAQRTAGFDMYDLDLAKKHNIVISNVPSYSPETIAEYSVSIALQLVRRFPDIERRVQ 129
Query: 182 AG--KWQRNKYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPADRARAIG 239
A WQ + + + T+A++G G++G+ A+ G G + A+D Y P
Sbjct: 130 AHDFTWQ-AEIMSKPVKNMTVAIIGTGRIGAATAKIYAGFGATITAYDAY-PNK-----D 182
Query: 240 VDLV----SFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVIDEE 295
+D + S EAI AD ISLH+P + + + F +KKG ++N ARG VI+
Sbjct: 183 LDFLTYKDSVKEAIKDADIISLHVPANKESYHLFDKAMFDHVKKGAILVNAARGAVINTP 242
Query: 296 ALVRALDSGRVAQAALDVFTEEPP-------------PADSKLVQHERVTVTPHLGASTM 342
L+ A++ G + AA+D + E +L++HER+ VTPH+ +
Sbjct: 243 DLIAAVNDGTLLGAAIDTYENEAAYFTNDWTNKDIDDKTLLELIEHERILVTPHIAFFSD 302
Query: 343 EA 344
EA
Sbjct: 303 EA 304
|
Length = 330 |
| >gnl|CDD|235800 PRK06436, PRK06436, glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 109 bits (275), Expect = 1e-26
Identities = 63/233 (27%), Positives = 118/233 (50%), Gaps = 9/233 (3%)
Query: 121 RLKVVGRAGVGIDNVDLAAATEFGCLVVNAPTANTVAAAEHGIALLAAMARNVAQADASV 180
+ K++ G+D++D++ E L NA A +++ AEH ALL A A+N+ + + ++
Sbjct: 49 KTKMIQSLSAGVDHIDVSGIPENVVLCSNA-GAYSISVAEHAFALLLAWAKNICENNYNM 107
Query: 181 KAGKWQRNKYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPADRARAIGV 240
K G ++++ L K+L +LG+G +G VA AK GM++ A Y + I
Sbjct: 108 KNGNFKQSPTK--LLYNKSLGILGYGGIGRRVALLAKAFGMNIYA---YTRSYVNDGISS 162
Query: 241 DLVSFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVIDEEALVRA 300
+ ++ + +DF+ + +PLT T ++N + +KG+ IINVAR V+D+ ++
Sbjct: 163 IYMEPEDIMKKSDFVLISLPLTDETRGMINSKMLSLFRKGLAIINVARADVVDKNDMLNF 222
Query: 301 LDSGRVAQAALDVFTEEPPPADSKLVQHERVTVTPHLGASTMEAQEGVAIEIA 353
L + DV+ EP ++ + V ++PH+ A+ +A
Sbjct: 223 LRNHNDKYYLSDVWWNEPIITETNP---DNVILSPHVAGGMSGEIMQPAVALA 272
|
Length = 303 |
| >gnl|CDD|240640 cd12163, 2-Hacid_dh_5, Putative D-isomer specific 2-hydroxyacid dehydrogenases | Back alignment and domain information |
|---|
Score = 110 bits (277), Expect = 2e-26
Identities = 64/196 (32%), Positives = 93/196 (47%), Gaps = 28/196 (14%)
Query: 181 KAGKWQRNKYV--GVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAH------DPYAPA 232
K W R + VGK + +LG+G +G + AR A+ LGM V A+ P +
Sbjct: 115 KEQTWGRRQEAYSVEDSVGKRVGILGYGSIGRQTARLAQALGMEVYAYTRSPRPTPESRK 174
Query: 233 DRARAI----------------GVDLVSFDEAIATA-DFISLHMPLTPATSKVLNDETFG 275
D + G D S E + D + + +PLTPAT +L E F
Sbjct: 175 DDGYIVPGTGDPDGSIPSAWFSGTDKASLHEFLRQDLDLLVVSLPLTPATKHLLGAEEF- 233
Query: 276 KM--KKGVRIINVARGGVIDEEALVRALDSGRVAQAALDVFTEEPPPADSKLVQHERVTV 333
++ K+ + N+ARG ++D +ALV AL+SG++ AALDV EP PAD L V +
Sbjct: 234 EILAKRKTFVSNIARGSLVDTDALVAALESGQIRGAALDVTDPEPLPADHPLWSAPNVII 293
Query: 334 TPHLGASTMEAQEGVA 349
TPH+ T E +
Sbjct: 294 TPHVSWQTQEYFDRAL 309
|
2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 334 |
| >gnl|CDD|240637 cd12160, 2-Hacid_dh_3, Putative D-isomer specific 2-hydroxyacid dehydrogenases | Back alignment and domain information |
|---|
Score = 103 bits (259), Expect = 2e-24
Identities = 61/190 (32%), Positives = 93/190 (48%), Gaps = 16/190 (8%)
Query: 159 AEHGIALLAAMARNVAQADASVKAGKWQ---------RNKYVGVSLVGKTLAVLGFGKVG 209
AEH +AL+ A R + + + + +W R +L+G + + GFG +G
Sbjct: 96 AEHTLALILAAVRRLDEMREAQREHRWAGELGGLQPLRPAGRLTTLLGARVLIWGFGSIG 155
Query: 210 SEVARRAKGLGMHVIAHDPYAPADRARAIGVDLVS---FDEAIATADFISLHMPLTPATS 266
+A LG V A + RA G +V+ E + D + + +P TP+T+
Sbjct: 156 QRLAPLLTALGARVT---GVARSAGERA-GFPVVAEDELPELLPETDVLVMILPATPSTA 211
Query: 267 KVLNDETFGKMKKGVRIINVARGGVIDEEALVRALDSGRVAQAALDVFTEEPPPADSKLV 326
L+ E + K ++NV RG +DE+ALV AL+SGR+ AALDV EP PA S L
Sbjct: 212 HALDAEVLAALPKHAWVVNVGRGATVDEDALVAALESGRLGGAALDVTATEPLPASSPLW 271
Query: 327 QHERVTVTPH 336
+ +TPH
Sbjct: 272 DAPNLILTPH 281
|
2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 310 |
| >gnl|CDD|185335 PRK15438, PRK15438, erythronate-4-phosphate dehydrogenase PdxB; Provisional | Back alignment and domain information |
|---|
Score = 102 bits (256), Expect = 1e-23
Identities = 82/261 (31%), Positives = 122/261 (46%), Gaps = 31/261 (11%)
Query: 100 DALIVRSGTKVNRDVFESSAGRLKVVGRAGVGIDNVDLAAATEFGCLVVNAPTANTVAAA 159
DAL+VRS TKVN + +K VG A G D+VD A + G AP N +A
Sbjct: 39 DALMVRSVTKVNESLLAGKP--IKFVGTATAGTDHVDEAWLKQAGIGFSAAPGCNAIAVV 96
Query: 160 EHGIALLAAMARNVAQADASVKAGKWQRNKYVGVSLVGKTLAVLGFGKVGSEVARRAKGL 219
E+ + L +A +R+ G SL +T+ ++G G VG + R + L
Sbjct: 97 EYVFSSLLMLA---------------ERD---GFSLHDRTVGIVGVGNVGRRLQARLEAL 138
Query: 220 GMHVIAHDPYAPADRARAIGVDLVSFDEAIATADFISLHMPL---TPATSKVLNDETF-G 275
G+ + DP ADR D S DE + AD ++ H PL P + L DE
Sbjct: 139 GIKTLLCDP-PRADRGDE--GDFRSLDELVQEADILTFHTPLFKDGPYKTLHLADEKLIR 195
Query: 276 KMKKGVRIINVARGGVIDEEALVRALDSGRVAQAALDVFTEEPPPADSKLVQHERVTV-T 334
+K G +IN RG V+D AL+ L+ G+ LDV+ EP + + ++V + T
Sbjct: 196 SLKPGAILINACRGAVVDNTALLTCLNEGQKLSVVLDVWEGEP---ELNVELLKKVDIGT 252
Query: 335 PHLGASTMEAQEGVAIEIAEA 355
PH+ T+E + ++ EA
Sbjct: 253 PHIAGYTLEGKARGTTQVFEA 273
|
Length = 378 |
| >gnl|CDD|153174 cd04902, ACT_3PGDH-xct, C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH) | Back alignment and domain information |
|---|
Score = 82.5 bits (205), Expect = 2e-19
Identities = 27/72 (37%), Positives = 43/72 (59%)
Query: 529 ILCRQVDQPGMIGTVGSILGSENVNVSFMSVGRVAPRKHAVMAIGVDEQPRKETLKKIGD 588
++ R D+PG+IG VG+ILG +N++ M VGR P A+M + VDE E L+++
Sbjct: 2 LVVRNTDRPGVIGKVGTILGEAGINIAGMQVGRDEPGGEALMVLSVDEPVPDEVLEELRA 61
Query: 589 VPAIEEFVFLKL 600
+P I ++L
Sbjct: 62 LPGILSAKVVEL 73
|
The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between identical domains in the asymmetric unit. How this asymmetry influences the mechanism of effector inhibition is still unknown. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 73 |
| >gnl|CDD|185366 PRK15469, ghrA, bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional | Back alignment and domain information |
|---|
Score = 87.2 bits (216), Expect = 9e-19
Identities = 64/180 (35%), Positives = 96/180 (53%), Gaps = 18/180 (10%)
Query: 199 TLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPADRARAIGVDLVSF---DEAIA----T 251
T+ +LG G +GS+VA+ + G P R+R + SF +E A T
Sbjct: 138 TIGILGAGVLGSKVAQSLQTWGF------PLRCWSRSRKSWPGVQSFAGREELSAFLSQT 191
Query: 252 ADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVIDEEALVRALDSGRVAQAAL 311
I+L +P TP T ++N + ++ G ++N+ARG + E+ L+ ALDSG+V A L
Sbjct: 192 RVLINL-LPNTPETVGIINQQLLEQLPDGAYLLNLARGVHVVEDDLLAALDSGKVKGAML 250
Query: 312 DVFTEEPPPADSKLVQHERVTVTPHLGASTMEAQEGVAIE-IAEAVVGALKGELAATAVN 370
DVF+ EP P +S L QH RV +TPH+ A T A+ A+E I+ + KGE V+
Sbjct: 251 DVFSREPLPPESPLWQHPRVAITPHVAAVTRPAE---AVEYISRTIAQLEKGERVCGQVD 307
|
Length = 312 |
| >gnl|CDD|240631 cd12154, FDH_GDH_like, Formate/glycerate dehydrogenases, D-specific 2-hydroxy acid dehydrogenases and related dehydrogenases | Back alignment and domain information |
|---|
Score = 83.8 bits (207), Expect = 1e-17
Identities = 56/243 (23%), Positives = 86/243 (35%), Gaps = 23/243 (9%)
Query: 91 ELCTKISLCDALIVRSGTKVNRDVFESSAGRLKVVGRAGVGIDNVDLA-AATEFGCLVVN 149
L + D ++ N + +++ +G D+ DL A G +
Sbjct: 57 TLAKALWSLDVVLKVKEPLTNAEYALIQKLGDRLLFTYTIGADHRDLTEALARAGLTAIA 116
Query: 150 APTA-------NTVAAAEHGIALLAAMARNVAQADASVKAGKWQRNKYVGVSLVGKTLAV 202
N++ A E + +A + GKT+ V
Sbjct: 117 VEGVELPLLTSNSIGAGELSVQFIARFLEVQQPGRLGGAPD-----------VAGKTVVV 165
Query: 203 LGFGKVGSEVARRAKGLGMHVIAHD--PYAPADRARAIGVDLVSFDEAIATADFISLHMP 260
+G G VG E A+ +GLG V+ D A G ++ +EA+A AD I
Sbjct: 166 VGAGVVGKEAAQMLRGLGAQVLITDINVEALEQLEELGGKNVEELEEALAEADVIVTTTL 225
Query: 261 LTPATSKVLNDET-FGKMKKGVRIINVARGGVIDEEALVR-ALDSGRVAQAALDVFTEEP 318
L + +L E +MK G I+NVA G V +AL L+ G DV P
Sbjct: 226 LPGKRAGILVPEELVEQMKPGSVIVNVAVGAVGCVQALHTQLLEEGHGVVHYGDVNMPGP 285
Query: 319 PPA 321
A
Sbjct: 286 GCA 288
|
The formate/glycerate dehydrogenase like family contains a diverse group of enzymes such as formate dehydrogenase (FDH), glycerate dehydrogenase (GDH), D-lactate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine hydrolase, that share a common 2-domain structure. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar domains of the alpha/beta Rossmann fold NAD+ binding form. The NAD(P) binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD(P) is bound, primarily to the C-terminal portion of the 2nd (internal) domain. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. 2-hydroxyacid dehydrogenases are enzymes that catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of formate ion to carbon dioxide with the concomitant reduction of NAD+ to NADH. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of a hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. Length = 310 |
| >gnl|CDD|153151 cd04879, ACT_3PGDH-like, ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH) | Back alignment and domain information |
|---|
Score = 71.7 bits (177), Expect = 1e-15
Identities = 24/70 (34%), Positives = 37/70 (52%)
Query: 529 ILCRQVDQPGMIGTVGSILGSENVNVSFMSVGRVAPRKHAVMAIGVDEQPRKETLKKIGD 588
+L D PG+IG VG+ILG +N++ M VGR A M + VD +E L+++
Sbjct: 2 LLIVHKDVPGVIGKVGTILGEHGINIAAMQVGRKEKGGIAYMVLDVDSPVPEEVLEELKA 61
Query: 589 VPAIEEFVFL 598
+P I +
Sbjct: 62 LPGIIRVRLI 71
|
ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-exposed active site cleft. This CD also includes the C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillus, and Treponema species. LSD enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in E. coli, and other Enterobacteriales, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 71 |
| >gnl|CDD|153175 cd04903, ACT_LSD, C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit | Back alignment and domain information |
|---|
Score = 56.0 bits (136), Expect = 3e-10
Identities = 21/59 (35%), Positives = 33/59 (55%)
Query: 535 DQPGMIGTVGSILGSENVNVSFMSVGRVAPRKHAVMAIGVDEQPRKETLKKIGDVPAIE 593
D+PG I V S+L +N++FM V R A+M I VD+ +E +++I +P I
Sbjct: 8 DKPGAIAKVTSVLADHEINIAFMRVSRKEKGDQALMVIEVDQPIDEEVIEEIKKIPNIH 66
|
The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 71 |
| >gnl|CDD|198065 smart00997, AdoHcyase_NAD, S-adenosyl-L-homocysteine hydrolase, NAD binding domain | Back alignment and domain information |
|---|
Score = 56.7 bits (138), Expect = 1e-09
Identities = 35/102 (34%), Positives = 47/102 (46%), Gaps = 17/102 (16%)
Query: 192 GVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPADRARAI-----GVDLVSFD 246
V L GK + V G+G VG VA R +GLG VI + D RA+ G +++ +
Sbjct: 18 NVLLAGKNVVVAGYGDVGKGVAARLRGLGARVIVTE----IDPIRALEAAMDGFEVMKME 73
Query: 247 EAIATADFISLHMPLTPAT--SKVLNDETFGKMKKGVRIINV 286
EA AD +T AT V+ E F MK G + N
Sbjct: 74 EAAKRADIF-----VT-ATGNKDVITREHFRAMKDGAILANA 109
|
Length = 162 |
| >gnl|CDD|223573 COG0499, SAM1, S-adenosylhomocysteine hydrolase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 51.5 bits (124), Expect = 7e-07
Identities = 33/96 (34%), Positives = 46/96 (47%), Gaps = 9/96 (9%)
Query: 193 VSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAH--DPYAPADRARAIGVDLVSFDEAIA 250
V L GK + V G+G VG +A R +G+G VI DP A A G +++ +EA
Sbjct: 205 VLLAGKNVVVAGYGWVGRGIAMRLRGMGARVIVTEVDP-IRALEAAMDGFRVMTMEEAAK 263
Query: 251 TAD-FISLHMPLTPATSKVLNDETFGKMKKGVRIIN 285
T D F++ V+ E F KMK G + N
Sbjct: 264 TGDIFVT-----ATGNKDVIRKEHFEKMKDGAILAN 294
|
Length = 420 |
| >gnl|CDD|213572 TIGR00936, ahcY, adenosylhomocysteinase | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 8e-06
Identities = 36/107 (33%), Positives = 51/107 (47%), Gaps = 10/107 (9%)
Query: 195 LVGKTLAVLGFGKVGSEVARRAKGLGMHVIAH--DPYAPADRARAIGVDLVSFDEAIATA 252
+ GKT+ V G+G G +A RA+G+G VI DP A A G +++ +EA
Sbjct: 194 IAGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDP-IRALEAAMDGFRVMTMEEAAKIG 252
Query: 253 D-FISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGV-IDEEAL 297
D FI+ V+ E F MK G + N+ V ID +AL
Sbjct: 253 DIFIT-----ATGNKDVIRGEHFENMKDGAIVANIGHFDVEIDVKAL 294
|
This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704) [Energy metabolism, Amino acids and amines]. Length = 407 |
| >gnl|CDD|240619 cd00401, SAHH, S-Adenosylhomocysteine Hydrolase, NAD-binding and catalytic domains | Back alignment and domain information |
|---|
Score = 47.5 bits (114), Expect = 1e-05
Identities = 34/94 (36%), Positives = 46/94 (48%), Gaps = 13/94 (13%)
Query: 193 VSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAH--DPYAPADRARAIGVDLVSFDEAIA 250
V + GK + V G+G VG A RA+GLG VI DP A +A G +++ +EA
Sbjct: 191 VLIAGKVVVVAGYGWVGKGCAMRARGLGARVIVTEVDPIC-ALQAAMDGFEVMPMEEAAK 249
Query: 251 TAD-FISLHMPLTPAT--SKVLNDETFGKMKKGV 281
D F++ AT V+ E F KMK G
Sbjct: 250 IGDIFVT-------ATGNKDVIRGEHFEKMKDGA 276
|
S-adenosyl-L-homocysteine hydrolase (SAHH, AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homotetramers, with each monomer binding one molecule of NAD+. Length = 402 |
| >gnl|CDD|235488 PRK05476, PRK05476, S-adenosyl-L-homocysteine hydrolase; Provisional | Back alignment and domain information |
|---|
Score = 47.4 bits (114), Expect = 1e-05
Identities = 31/94 (32%), Positives = 44/94 (46%), Gaps = 13/94 (13%)
Query: 193 VSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAH--DPYAPADRARAIGVDLVSFDEAIA 250
V + GK + V G+G VG A+R +GLG VI DP A +A G +++ +EA
Sbjct: 208 VLIAGKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPIC-ALQAAMDGFRVMTMEEAAE 266
Query: 251 TAD-FISLHMPLTPATS--KVLNDETFGKMKKGV 281
D F++ AT V+ E MK G
Sbjct: 267 LGDIFVT-------ATGNKDVITAEHMEAMKDGA 293
|
Length = 425 |
| >gnl|CDD|181371 PRK08306, PRK08306, dipicolinate synthase subunit A; Reviewed | Back alignment and domain information |
|---|
Score = 43.7 bits (104), Expect = 2e-04
Identities = 32/104 (30%), Positives = 43/104 (41%), Gaps = 17/104 (16%)
Query: 197 GKTLAVLGFGKVGSEVARRAKGLGMH--VIAHDPYAPADRARA--IGVDLVSFD---EAI 249
G + VLGFG+ G +AR K LG + V A A AR +G+ E +
Sbjct: 152 GSNVLVLGFGRTGMTLARTLKALGANVTVGARK---SAHLARITEMGLSPFHLSELAEEV 208
Query: 250 ATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVAR--GGV 291
D I +P + VL E KM II++A GG
Sbjct: 209 GKIDIIFNTIP-----ALVLTKEVLSKMPPEALIIDLASKPGGT 247
|
Length = 296 |
| >gnl|CDD|153139 cd02116, ACT, ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme | Back alignment and domain information |
|---|
Score = 37.7 bits (88), Expect = 7e-04
Identities = 13/51 (25%), Positives = 23/51 (45%)
Query: 535 DQPGMIGTVGSILGSENVNVSFMSVGRVAPRKHAVMAIGVDEQPRKETLKK 585
D+PG++ V S+L +N++ + A + I VD E L +
Sbjct: 7 DRPGLLAKVLSVLAEAGINITSIEQRTSGDGGEADIFIVVDGDGDLEKLLE 57
|
Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-prephenate dehydratase enzyme (P-protein), respectively. Aspartokinases typically consist of two C-terminal ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. ACT domain repeats have been shown to have nonequivalent ligand-binding sites with complex regulatory patterns such as those seen in the bifunctional enzyme, aspartokinase-homoserine dehydrogenase (ThrA). In other enzymes, such as phenylalanine hydroxylases, the ACT domain appears to function as a flexible small module providing allosteric regulation via transmission of conformational changes, these conformational changes are not necessarily initiated by regulatory ligand binding at the ACT domain itself. ACT domains are present either singularly, N- or C-terminal, or in pairs present C-terminal or between two catalytic domains. Unique to cyanobacteria are four ACT domains C-terminal to an aspartokinase domain. A few proteins are composed almost entirely of ACT domain repeats as seen in the four ACT domain protein, the ACR protein, found in higher plants; and the two ACT domain protein, the glycine cleavage system transcriptional repressor (GcvR) protein, found in some bacteria. Also seen are single ACT domain proteins similar to the Streptococcus pneumoniae ACT domain protein (uncharacterized pdb structure 1ZPV) found in both bacteria and archaea. Purportedly, the ACT domain is an evolutionarily mobile ligand binding regulatory module that has been fused to different enzymes at various times. Length = 60 |
| >gnl|CDD|240258 PTZ00075, PTZ00075, Adenosylhomocysteinase; Provisional | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 0.002
Identities = 32/112 (28%), Positives = 51/112 (45%), Gaps = 12/112 (10%)
Query: 193 VSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAH--DPYAPADRARAIGVDLVSFDEAIA 250
V + GKT+ V G+G VG A+ +G G V+ DP A +A G +V+ ++ +
Sbjct: 250 VMIAGKTVVVCGYGDVGKGCAQALRGFGARVVVTEIDPIC-ALQAAMEGYQVVTLEDVVE 308
Query: 251 TAD-FISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVIDEEALVRAL 301
TAD F++ ++ E +MK + N+ G D E V L
Sbjct: 309 TADIFVT-----ATGNKDIITLEHMRRMKNNAIVGNI---GHFDNEIQVAEL 352
|
Length = 476 |
| >gnl|CDD|234094 TIGR03026, NDP-sugDHase, nucleotide sugar dehydrogenase | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 0.002
Identities = 25/104 (24%), Positives = 46/104 (44%), Gaps = 15/104 (14%)
Query: 193 VSLVGKTLAVLGFG-KVGS---------EVARRAKGLGMHVIAHDPYAPADRARAIGVDL 242
+L GKT+ +LG K + ++ K G V A+DP P + + + +
Sbjct: 307 GALKGKTVLILGLAFKPNTDDVRESPALDIIELLKEKGAKVKAYDPLVPEEEVKGLP-SI 365
Query: 243 VSFDEAIATADFISLHMPLTP-ATSKVLNDETFGKMKKGVRIIN 285
+EA+ AD + + LT + K L+ E + KG +++
Sbjct: 366 DDLEEALKGADALVI---LTDHSEFKDLDLEKIKDLMKGKVVVD 406
|
Enzymes in this family catalyze the NAD-dependent alcohol-to-acid oxidation of nucleotide-linked sugars. Examples include UDP-glucose 6-dehydrogenase (1.1.1.22) , GDP-mannose 6-dehydrogenase (1.1.1.132) , UDP-N-acetylglucosamine 6-dehydrogenase (1.1.1.136), UDP-N-acetyl-D-galactosaminuronic acid dehydrogenase and UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase. These enzymes are most often involved in the biosynthesis of polysaccharides and are often found in operons devoted to that purpose. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively. Length = 409 |
| >gnl|CDD|190133 pfam01842, ACT, ACT domain | Back alignment and domain information |
|---|
Score = 36.2 bits (84), Expect = 0.003
Identities = 11/66 (16%), Positives = 28/66 (42%), Gaps = 1/66 (1%)
Query: 527 SIILCRQVDQPGMIGTVGSILGSENVNVSFMSVGRVAPRKH-AVMAIGVDEQPRKETLKK 585
+++ D+PG++ V L +N+ +S + + + VDE+ + L+
Sbjct: 1 TVLEVGVPDRPGLLAEVFGALADRGINIESISQSTSGDKAGIVFIVVVVDEEDLEAALEA 60
Query: 586 IGDVPA 591
+ +
Sbjct: 61 LKKLLG 66
|
This family of domains generally have a regulatory role. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. The ACT domain is found in: D-3-phosphoglycerate dehydrogenase EC:1.1.1.95, which is inhibited by serine. Aspartokinase EC:2.7.2.4, which is regulated by lysine. Acetolactate synthase small regulatory subunit, which is inhibited by valine. Phenylalanine-4-hydroxylase EC:1.14.16.1, which is regulated by phenylalanine. Prephenate dehydrogenase EC:4.2.1.51. formyltetrahydrofolate deformylase EC:3.5.1.10, which is activated by methionine and inhibited by glycine. GTP pyrophosphokinase EC:2.7.6.5. Length = 66 |
| >gnl|CDD|218507 pfam05221, AdoHcyase, S-adenosyl-L-homocysteine hydrolase | Back alignment and domain information |
|---|
Score = 39.7 bits (93), Expect = 0.004
Identities = 28/96 (29%), Positives = 40/96 (41%), Gaps = 7/96 (7%)
Query: 193 VSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAH--DPYAPADRARAIGVDLVSFDEAIA 250
V + GK V G+G VG A +G G VI DP A +A G +V+ +E +
Sbjct: 206 VMIAGKVAVVCGYGDVGKGCAASLRGQGARVIVTEIDPIC-ALQAAMEGYQVVTLEEVVK 264
Query: 251 TADFISLHMPLTPATSKVLNDETFGKMKKGVRIINV 286
AD T ++ F MKK + N+
Sbjct: 265 DADIFV----TTTGCVDIIVGRHFMNMKKDAIVCNI 296
|
Length = 430 |
| >gnl|CDD|240647 cd12170, 2-Hacid_dh_9, Putative D-isomer specific 2-hydroxyacid dehydrogenases | Back alignment and domain information |
|---|
Score = 39.2 bits (92), Expect = 0.004
Identities = 36/157 (22%), Positives = 58/157 (36%), Gaps = 13/157 (8%)
Query: 193 VSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPADR---ARAIGVDLVSFDEAI 249
L G + ++G G G +A G V Y R A A G+ + +E +
Sbjct: 134 RELTGLKVGIIGLGTTGQMIADALSFFGADVY----YYSRTRKPDAEAKGIRYLPLNELL 189
Query: 250 ATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVIDEEALVRALDSGRVAQA 309
T D I + P +L +E F + G + N + G + EAL + L +
Sbjct: 190 KTVDVICTCL---PKNVILLGEEEFELLGDGKILFNTSLGPSFEVEALKKWLKASGYNIF 246
Query: 310 ALDVFTEEPPPADSKLVQHERVTVTPHLGASTMEAQE 346
D D +L+++ V T T +A E
Sbjct: 247 DCDTAGALG---DEELLRYPNVICTNKSAGWTRQAFE 280
|
2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 294 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 600 | |||
| TIGR01327 | 525 | PGDH D-3-phosphoglycerate dehydrogenase. This mode | 100.0 | |
| PRK13581 | 526 | D-3-phosphoglycerate dehydrogenase; Provisional | 100.0 | |
| KOG0068 | 406 | consensus D-3-phosphoglycerate dehydrogenase, D-is | 100.0 | |
| PRK11790 | 409 | D-3-phosphoglycerate dehydrogenase; Provisional | 100.0 | |
| COG0111 | 324 | SerA Phosphoglycerate dehydrogenase and related de | 100.0 | |
| PRK15409 | 323 | bifunctional glyoxylate/hydroxypyruvate reductase | 100.0 | |
| COG1052 | 324 | LdhA Lactate dehydrogenase and related dehydrogena | 100.0 | |
| PRK08410 | 311 | 2-hydroxyacid dehydrogenase; Provisional | 100.0 | |
| PRK13243 | 333 | glyoxylate reductase; Reviewed | 100.0 | |
| PRK06487 | 317 | glycerate dehydrogenase; Provisional | 100.0 | |
| PLN02306 | 386 | hydroxypyruvate reductase | 100.0 | |
| PRK06932 | 314 | glycerate dehydrogenase; Provisional | 100.0 | |
| PLN02928 | 347 | oxidoreductase family protein | 100.0 | |
| PLN03139 | 386 | formate dehydrogenase; Provisional | 100.0 | |
| PRK07574 | 385 | formate dehydrogenase; Provisional | 100.0 | |
| PRK08605 | 332 | D-lactate dehydrogenase; Validated | 100.0 | |
| PRK12480 | 330 | D-lactate dehydrogenase; Provisional | 100.0 | |
| PRK15438 | 378 | erythronate-4-phosphate dehydrogenase PdxB; Provis | 100.0 | |
| KOG0069 | 336 | consensus Glyoxylate/hydroxypyruvate reductase (D- | 100.0 | |
| PRK00257 | 381 | erythronate-4-phosphate dehydrogenase; Validated | 100.0 | |
| PRK15469 | 312 | ghrA bifunctional glyoxylate/hydroxypyruvate reduc | 100.0 | |
| PRK06436 | 303 | glycerate dehydrogenase; Provisional | 100.0 | |
| PF02826 | 178 | 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy | 100.0 | |
| TIGR00719 | 208 | sda_beta L-serine dehydratase, iron-sulfur-depende | 100.0 | |
| KOG0067 | 435 | consensus Transcription factor CtBP [Transcription | 99.96 | |
| PRK06545 | 359 | prephenate dehydrogenase; Validated | 99.92 | |
| PRK08818 | 370 | prephenate dehydrogenase; Provisional | 99.88 | |
| PF00389 | 133 | 2-Hacid_dh: D-isomer specific 2-hydroxyacid dehydr | 99.86 | |
| PTZ00075 | 476 | Adenosylhomocysteinase; Provisional | 99.84 | |
| TIGR02853 | 287 | spore_dpaA dipicolinic acid synthetase, A subunit. | 99.77 | |
| PRK07417 | 279 | arogenate dehydrogenase; Reviewed | 99.68 | |
| COG0287 | 279 | TyrA Prephenate dehydrogenase [Amino acid transpor | 99.61 | |
| PRK07502 | 307 | cyclohexadienyl dehydrogenase; Validated | 99.61 | |
| PLN02256 | 304 | arogenate dehydrogenase | 99.6 | |
| PRK08306 | 296 | dipicolinate synthase subunit A; Reviewed | 99.58 | |
| PRK08507 | 275 | prephenate dehydrogenase; Validated | 99.58 | |
| PLN02494 | 477 | adenosylhomocysteinase | 99.55 | |
| PRK08655 | 437 | prephenate dehydrogenase; Provisional | 99.49 | |
| TIGR00936 | 406 | ahcY adenosylhomocysteinase. This enzyme hydrolyze | 99.47 | |
| PRK13403 | 335 | ketol-acid reductoisomerase; Provisional | 99.45 | |
| PLN02712 | 667 | arogenate dehydrogenase | 99.44 | |
| COG1760 | 262 | SdaA L-serine deaminase [Amino acid transport and | 99.44 | |
| PRK11199 | 374 | tyrA bifunctional chorismate mutase/prephenate deh | 99.39 | |
| PRK05476 | 425 | S-adenosyl-L-homocysteine hydrolase; Provisional | 99.33 | |
| PRK14806 | 735 | bifunctional cyclohexadienyl dehydrogenase/ 3-phos | 99.32 | |
| PLN02712 | 667 | arogenate dehydrogenase | 99.31 | |
| PF02153 | 258 | PDH: Prephenate dehydrogenase; InterPro: IPR003099 | 99.28 | |
| PF00670 | 162 | AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase | 99.27 | |
| PF03446 | 163 | NAD_binding_2: NAD binding domain of 6-phosphogluc | 99.23 | |
| COG2084 | 286 | MmsB 3-hydroxyisobutyrate dehydrogenase and relate | 99.16 | |
| PRK11559 | 296 | garR tartronate semialdehyde reductase; Provisiona | 99.12 | |
| TIGR01505 | 291 | tartro_sem_red 2-hydroxy-3-oxopropionate reductase | 99.1 | |
| PRK15461 | 296 | NADH-dependent gamma-hydroxybutyrate dehydrogenase | 99.06 | |
| cd00401 | 413 | AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado | 99.04 | |
| PRK12490 | 299 | 6-phosphogluconate dehydrogenase-like protein; Rev | 99.02 | |
| PRK05479 | 330 | ketol-acid reductoisomerase; Provisional | 99.0 | |
| PRK09599 | 301 | 6-phosphogluconate dehydrogenase-like protein; Rev | 98.93 | |
| cd04902 | 73 | ACT_3PGDH-xct C-terminal ACT (regulatory) domain o | 98.88 | |
| PRK15059 | 292 | tartronate semialdehyde reductase; Provisional | 98.88 | |
| PF03315 | 157 | SDH_beta: Serine dehydratase beta chain; InterPro: | 98.87 | |
| PLN02350 | 493 | phosphogluconate dehydrogenase (decarboxylating) | 98.86 | |
| PRK08293 | 287 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 98.86 | |
| PRK07066 | 321 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 98.83 | |
| PLN02545 | 295 | 3-hydroxybutyryl-CoA dehydrogenase | 98.81 | |
| TIGR00465 | 314 | ilvC ketol-acid reductoisomerase. This is the seco | 98.78 | |
| TIGR00872 | 298 | gnd_rel 6-phosphogluconate dehydrogenase (decarbox | 98.76 | |
| PRK05225 | 487 | ketol-acid reductoisomerase; Validated | 98.75 | |
| PRK09260 | 288 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 98.74 | |
| PRK15040 | 454 | L-serine dehydratase TdcG; Provisional | 98.73 | |
| COG0499 | 420 | SAM1 S-adenosylhomocysteine hydrolase [Coenzyme me | 98.71 | |
| PF07991 | 165 | IlvN: Acetohydroxy acid isomeroreductase, catalyti | 98.71 | |
| PLN02858 | 1378 | fructose-bisphosphate aldolase | 98.7 | |
| PRK11861 | 673 | bifunctional prephenate dehydrogenase/3-phosphoshi | 98.7 | |
| TIGR01692 | 288 | HIBADH 3-hydroxyisobutyrate dehydrogenase. This en | 98.68 | |
| PTZ00142 | 470 | 6-phosphogluconate dehydrogenase; Provisional | 98.67 | |
| PLN02858 | 1378 | fructose-bisphosphate aldolase | 98.66 | |
| KOG0409 | 327 | consensus Predicted dehydrogenase [General functio | 98.66 | |
| PRK15023 | 454 | L-serine deaminase; Provisional | 98.59 | |
| PRK11064 | 415 | wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro | 98.59 | |
| PRK07819 | 286 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 98.58 | |
| PRK07530 | 292 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 98.58 | |
| cd04901 | 69 | ACT_3PGDH C-terminal ACT (regulatory) domain of D- | 98.56 | |
| TIGR00873 | 467 | gnd 6-phosphogluconate dehydrogenase, decarboxylat | 98.55 | |
| cd01075 | 200 | NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l | 98.55 | |
| PRK15182 | 425 | Vi polysaccharide biosynthesis protein TviB; Provi | 98.53 | |
| PRK14619 | 308 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 98.53 | |
| PRK06129 | 308 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 98.52 | |
| PLN02688 | 266 | pyrroline-5-carboxylate reductase | 98.51 | |
| PRK05808 | 282 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 98.51 | |
| PF03807 | 96 | F420_oxidored: NADP oxidoreductase coenzyme F420-d | 98.5 | |
| KOG1370 | 434 | consensus S-adenosylhomocysteine hydrolase [Coenzy | 98.48 | |
| PRK06444 | 197 | prephenate dehydrogenase; Provisional | 98.45 | |
| PRK14194 | 301 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 98.42 | |
| PRK06130 | 311 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 98.42 | |
| TIGR00561 | 511 | pntA NAD(P) transhydrogenase, alpha subunit. In so | 98.42 | |
| PRK06035 | 291 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 98.41 | |
| TIGR00518 | 370 | alaDH alanine dehydrogenase. The family of known L | 98.41 | |
| PRK08268 | 507 | 3-hydroxy-acyl-CoA dehydrogenase; Validated | 98.41 | |
| PRK12491 | 272 | pyrroline-5-carboxylate reductase; Reviewed | 98.4 | |
| cd04903 | 71 | ACT_LSD C-terminal ACT domain of the L-serine dehy | 98.39 | |
| cd04879 | 71 | ACT_3PGDH-like ACT_3PGDH-like CD includes the C-te | 98.39 | |
| cd01065 | 155 | NAD_bind_Shikimate_DH NAD(P) binding domain of Shi | 98.38 | |
| PRK07531 | 495 | bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe | 98.36 | |
| TIGR03026 | 411 | NDP-sugDHase nucleotide sugar dehydrogenase. All o | 98.35 | |
| PRK07679 | 279 | pyrroline-5-carboxylate reductase; Reviewed | 98.28 | |
| TIGR02279 | 503 | PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa | 98.27 | |
| PRK14189 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 98.24 | |
| PRK13302 | 271 | putative L-aspartate dehydrogenase; Provisional | 98.24 | |
| PF01842 | 66 | ACT: ACT domain; InterPro: IPR002912 The ACT domai | 98.22 | |
| PRK14188 | 296 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 98.2 | |
| PRK14618 | 328 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 98.19 | |
| PRK00094 | 325 | gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr | 98.17 | |
| COG1023 | 300 | Gnd Predicted 6-phosphogluconate dehydrogenase [Ca | 98.16 | |
| PRK14179 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 98.16 | |
| PRK11880 | 267 | pyrroline-5-carboxylate reductase; Reviewed | 98.12 | |
| TIGR00720 | 455 | sda_mono L-serine dehydratase, iron-sulfur-depende | 98.1 | |
| PRK15057 | 388 | UDP-glucose 6-dehydrogenase; Provisional | 98.08 | |
| PRK09424 | 509 | pntA NAD(P) transhydrogenase subunit alpha; Provis | 98.07 | |
| TIGR01724 | 341 | hmd_rel H2-forming N(5),N(10)-methenyltetrahydrome | 98.06 | |
| PRK07680 | 273 | late competence protein ComER; Validated | 98.06 | |
| PRK06476 | 258 | pyrroline-5-carboxylate reductase; Reviewed | 98.06 | |
| cd01080 | 168 | NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of | 98.05 | |
| COG0059 | 338 | IlvC Ketol-acid reductoisomerase [Amino acid trans | 98.01 | |
| KOG2380 | 480 | consensus Prephenate dehydrogenase (NADP+) [Amino | 98.0 | |
| PF03721 | 185 | UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen | 97.97 | |
| PRK08229 | 341 | 2-dehydropantoate 2-reductase; Provisional | 97.95 | |
| PRK14175 | 286 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.94 | |
| PF02737 | 180 | 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind | 97.92 | |
| PRK06928 | 277 | pyrroline-5-carboxylate reductase; Reviewed | 97.91 | |
| cd04878 | 72 | ACT_AHAS N-terminal ACT domain of the Escherichia | 97.89 | |
| COG2085 | 211 | Predicted dinucleotide-binding enzymes [General fu | 97.88 | |
| PF01488 | 135 | Shikimate_DH: Shikimate / quinate 5-dehydrogenase; | 97.86 | |
| PF10727 | 127 | Rossmann-like: Rossmann-like domain; InterPro: IPR | 97.85 | |
| cd05191 | 86 | NAD_bind_amino_acid_DH NAD(P) binding domain of am | 97.85 | |
| PF02882 | 160 | THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl | 97.83 | |
| PRK05472 | 213 | redox-sensing transcriptional repressor Rex; Provi | 97.81 | |
| TIGR01915 | 219 | npdG NADPH-dependent F420 reductase. This model re | 97.78 | |
| COG0677 | 436 | WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenas | 97.77 | |
| TIGR01546 | 333 | GAPDH-II_archae glyceraldehyde-3-phosphate dehydro | 97.75 | |
| PF01210 | 157 | NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate | 97.75 | |
| PRK13304 | 265 | L-aspartate dehydrogenase; Reviewed | 97.72 | |
| cd05213 | 311 | NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain | 97.72 | |
| cd01079 | 197 | NAD_bind_m-THF_DH NAD binding domain of methylene- | 97.71 | |
| PF01262 | 168 | AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal | 97.7 | |
| cd04889 | 56 | ACT_PDH-BS-like C-terminal ACT domain of the monof | 97.7 | |
| TIGR01035 | 417 | hemA glutamyl-tRNA reductase. This enzyme, togethe | 97.69 | |
| PRK10792 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.67 | |
| cd04874 | 72 | ACT_Af1403 N-terminal ACT domain of the yet unchar | 97.67 | |
| PRK09287 | 459 | 6-phosphogluconate dehydrogenase; Validated | 97.67 | |
| PRK07634 | 245 | pyrroline-5-carboxylate reductase; Reviewed | 97.65 | |
| cd05212 | 140 | NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom | 97.63 | |
| PRK14191 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.63 | |
| PTZ00431 | 260 | pyrroline carboxylate reductase; Provisional | 97.63 | |
| PRK06522 | 304 | 2-dehydropantoate 2-reductase; Reviewed | 97.61 | |
| COG0345 | 266 | ProC Pyrroline-5-carboxylate reductase [Amino acid | 97.61 | |
| PRK00045 | 423 | hemA glutamyl-tRNA reductase; Reviewed | 97.61 | |
| PRK12921 | 305 | 2-dehydropantoate 2-reductase; Provisional | 97.6 | |
| PRK14178 | 279 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.59 | |
| PRK14176 | 287 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.59 | |
| PRK11730 | 715 | fadB multifunctional fatty acid oxidation complex | 97.59 | |
| PRK08577 | 136 | hypothetical protein; Provisional | 97.58 | |
| PRK13562 | 84 | acetolactate synthase 1 regulatory subunit; Provis | 97.56 | |
| cd05311 | 226 | NAD_bind_2_malic_enz NAD(P) binding domain of mali | 97.55 | |
| PF13291 | 80 | ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A. | 97.55 | |
| PRK14192 | 283 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.53 | |
| PLN00203 | 519 | glutamyl-tRNA reductase | 97.52 | |
| TIGR02437 | 714 | FadB fatty oxidation complex, alpha subunit FadB. | 97.51 | |
| PRK14183 | 281 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.49 | |
| PRK08178 | 96 | acetolactate synthase 1 regulatory subunit; Review | 97.47 | |
| PRK11152 | 76 | ilvM acetolactate synthase 2 regulatory subunit; P | 97.47 | |
| PRK12557 | 342 | H(2)-dependent methylenetetrahydromethanopterin de | 97.46 | |
| PRK06249 | 313 | 2-dehydropantoate 2-reductase; Provisional | 97.45 | |
| PLN02353 | 473 | probable UDP-glucose 6-dehydrogenase | 97.44 | |
| TIGR02440 | 699 | FadJ fatty oxidation complex, alpha subunit FadJ. | 97.43 | |
| PRK06737 | 76 | acetolactate synthase 1 regulatory subunit; Valida | 97.42 | |
| cd04908 | 66 | ACT_Bt0572_1 N-terminal ACT domain of a novel prot | 97.39 | |
| cd01078 | 194 | NAD_bind_H4MPT_DH NADP binding domain of methylene | 97.38 | |
| cd04883 | 72 | ACT_AcuB C-terminal ACT domain of the Bacillus sub | 97.36 | |
| PRK11154 | 708 | fadJ multifunctional fatty acid oxidation complex | 97.35 | |
| TIGR02441 | 737 | fa_ox_alpha_mit fatty acid oxidation complex, alph | 97.35 | |
| cd04882 | 65 | ACT_Bt0572_2 C-terminal ACT domain of a novel prot | 97.35 | |
| PRK14190 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.34 | |
| PRK14170 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.34 | |
| TIGR02371 | 325 | ala_DH_arch alanine dehydrogenase, Archaeoglobus f | 97.33 | |
| PRK00258 | 278 | aroE shikimate 5-dehydrogenase; Reviewed | 97.33 | |
| PRK14186 | 297 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.32 | |
| PF03720 | 106 | UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogen | 97.31 | |
| PRK14169 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.3 | |
| PRK14982 | 340 | acyl-ACP reductase; Provisional | 97.3 | |
| PLN02516 | 299 | methylenetetrahydrofolate dehydrogenase (NADP+) | 97.3 | |
| PRK14177 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.29 | |
| PRK14166 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.29 | |
| cd04888 | 76 | ACT_PheB-BS C-terminal ACT domain of a small (~147 | 97.28 | |
| PRK14172 | 278 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.26 | |
| PRK14187 | 294 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.24 | |
| PRK14173 | 287 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.24 | |
| PLN02897 | 345 | tetrahydrofolate dehydrogenase/cyclohydrolase, put | 97.23 | |
| cd04881 | 79 | ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-termin | 97.23 | |
| PRK14180 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.23 | |
| PRK14182 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.2 | |
| PRK14171 | 288 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.18 | |
| PRK14181 | 287 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.17 | |
| TIGR00119 | 157 | acolac_sm acetolactate synthase, small subunit. ac | 97.16 | |
| COG0686 | 371 | Ald Alanine dehydrogenase [Amino acid transport an | 97.15 | |
| PLN02616 | 364 | tetrahydrofolate dehydrogenase/cyclohydrolase, put | 97.14 | |
| PRK06141 | 314 | ornithine cyclodeaminase; Validated | 97.14 | |
| PRK11895 | 161 | ilvH acetolactate synthase 3 regulatory subunit; R | 97.13 | |
| PRK14193 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.11 | |
| PF13710 | 63 | ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B. | 97.07 | |
| PRK07340 | 304 | ornithine cyclodeaminase; Validated | 97.05 | |
| COG1250 | 307 | FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabo | 97.03 | |
| cd01076 | 227 | NAD_bind_1_Glu_DH NAD(P) binding domain of glutama | 97.03 | |
| PRK14185 | 293 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.01 | |
| COG0190 | 283 | FolD 5,10-methylene-tetrahydrofolate dehydrogenase | 97.01 | |
| PF13241 | 103 | NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_ | 97.01 | |
| PRK00194 | 90 | hypothetical protein; Validated | 96.99 | |
| TIGR01763 | 305 | MalateDH_bact malate dehydrogenase, NAD-dependent. | 96.97 | |
| TIGR00507 | 270 | aroE shikimate 5-dehydrogenase. This model finds p | 96.96 | |
| TIGR01921 | 324 | DAP-DH diaminopimelate dehydrogenase. This model r | 96.93 | |
| PRK06349 | 426 | homoserine dehydrogenase; Provisional | 96.93 | |
| PRK06718 | 202 | precorrin-2 dehydrogenase; Reviewed | 96.92 | |
| PRK14184 | 286 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.9 | |
| PF01408 | 120 | GFO_IDH_MocA: Oxidoreductase family, NAD-binding R | 96.88 | |
| PRK14168 | 297 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.88 | |
| cd04887 | 74 | ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-te | 96.88 | |
| PRK12439 | 341 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 96.85 | |
| PRK08618 | 325 | ornithine cyclodeaminase; Validated | 96.85 | |
| cd04877 | 74 | ACT_TyrR N-terminal ACT domain of the TyrR protein | 96.84 | |
| PRK13940 | 414 | glutamyl-tRNA reductase; Provisional | 96.84 | |
| PRK14174 | 295 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.84 | |
| COG0362 | 473 | Gnd 6-phosphogluconate dehydrogenase [Carbohydrate | 96.84 | |
| smart00859 | 122 | Semialdhyde_dh Semialdehyde dehydrogenase, NAD bin | 96.82 | |
| TIGR01470 | 205 | cysG_Nterm siroheme synthase, N-terminal domain. T | 96.81 | |
| CHL00100 | 174 | ilvH acetohydroxyacid synthase small subunit | 96.8 | |
| PRK14167 | 297 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.79 | |
| PRK09310 | 477 | aroDE bifunctional 3-dehydroquinate dehydratase/sh | 96.76 | |
| TIGR02992 | 326 | ectoine_eutC ectoine utilization protein EutC. Mem | 96.74 | |
| PRK14620 | 326 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 96.73 | |
| COG0373 | 414 | HemA Glutamyl-tRNA reductase [Coenzyme metabolism] | 96.72 | |
| TIGR02354 | 200 | thiF_fam2 thiamine biosynthesis protein ThiF, fami | 96.71 | |
| COG4747 | 142 | ACT domain-containing protein [General function pr | 96.7 | |
| TIGR03376 | 342 | glycerol3P_DH glycerol-3-phosphate dehydrogenase ( | 96.69 | |
| COG0240 | 329 | GpsA Glycerol-3-phosphate dehydrogenase [Energy pr | 96.68 | |
| PRK14031 | 444 | glutamate dehydrogenase; Provisional | 96.63 | |
| PTZ00345 | 365 | glycerol-3-phosphate dehydrogenase; Provisional | 96.61 | |
| cd04869 | 81 | ACT_GcvR_2 ACT domains that comprise the Glycine C | 96.59 | |
| PRK06046 | 326 | alanine dehydrogenase; Validated | 96.59 | |
| PF02423 | 313 | OCD_Mu_crystall: Ornithine cyclodeaminase/mu-cryst | 96.57 | |
| PRK06719 | 157 | precorrin-2 dehydrogenase; Validated | 96.57 | |
| PTZ00117 | 319 | malate dehydrogenase; Provisional | 96.56 | |
| cd04875 | 74 | ACT_F4HF-DF N-terminal ACT domain of formyltetrahy | 96.55 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 96.52 | |
| PRK12549 | 284 | shikimate 5-dehydrogenase; Reviewed | 96.52 | |
| PRK08269 | 314 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 96.51 | |
| TIGR00670 | 301 | asp_carb_tr aspartate carbamoyltransferase. Ornith | 96.51 | |
| PRK00779 | 304 | ornithine carbamoyltransferase; Provisional | 96.5 | |
| cd04909 | 69 | ACT_PDH-BS C-terminal ACT domain of the monofuncti | 96.46 | |
| PRK01713 | 334 | ornithine carbamoyltransferase; Provisional | 96.45 | |
| cd05313 | 254 | NAD_bind_2_Glu_DH NAD(P) binding domain of glutama | 96.44 | |
| PRK09414 | 445 | glutamate dehydrogenase; Provisional | 96.44 | |
| PRK04435 | 147 | hypothetical protein; Provisional | 96.44 | |
| PRK13301 | 267 | putative L-aspartate dehydrogenase; Provisional | 96.43 | |
| cd04893 | 77 | ACT_GcvR_1 ACT domains that comprise the Glycine C | 96.43 | |
| TIGR00658 | 304 | orni_carb_tr ornithine carbamoyltransferase. Most | 96.39 | |
| cd04876 | 71 | ACT_RelA-SpoT ACT domain found C-terminal of the R | 96.37 | |
| PRK06823 | 315 | ornithine cyclodeaminase; Validated | 96.37 | |
| COG2423 | 330 | Predicted ornithine cyclodeaminase, mu-crystallin | 96.35 | |
| COG2150 | 167 | Predicted regulator of amino acid metabolism, cont | 96.34 | |
| cd04886 | 73 | ACT_ThrD-II-like C-terminal ACT domain of biodegra | 96.34 | |
| cd05211 | 217 | NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of | 96.33 | |
| PRK14030 | 445 | glutamate dehydrogenase; Provisional | 96.31 | |
| cd04884 | 72 | ACT_CBS C-terminal ACT domain of the cystathionine | 96.31 | |
| PF01118 | 121 | Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi | 96.3 | |
| PF02558 | 151 | ApbA: Ketopantoate reductase PanE/ApbA; InterPro: | 96.28 | |
| COG1712 | 255 | Predicted dinucleotide-utilizing enzyme [General f | 96.28 | |
| PRK01710 | 458 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 96.26 | |
| PRK06199 | 379 | ornithine cyclodeaminase; Validated | 96.25 | |
| cd04870 | 75 | ACT_PSP_1 CT domains found N-terminal of phosphose | 96.24 | |
| PRK06407 | 301 | ornithine cyclodeaminase; Provisional | 96.23 | |
| PLN02527 | 306 | aspartate carbamoyltransferase | 96.21 | |
| PRK00683 | 418 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 96.21 | |
| PRK02255 | 338 | putrescine carbamoyltransferase; Provisional | 96.2 | |
| PRK00676 | 338 | hemA glutamyl-tRNA reductase; Validated | 96.15 | |
| cd05291 | 306 | HicDH_like L-2-hydroxyisocapronate dehydrogenases | 96.15 | |
| cd04926 | 72 | ACT_ACR_4 C-terminal ACT domain, of a novel type o | 96.12 | |
| PF00208 | 244 | ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Val | 96.12 | |
| TIGR03026 | 411 | NDP-sugDHase nucleotide sugar dehydrogenase. All o | 96.12 | |
| cd04872 | 88 | ACT_1ZPV ACT domain proteins similar to the yet un | 96.1 | |
| PRK13303 | 265 | L-aspartate dehydrogenase; Provisional | 96.07 | |
| PRK07589 | 346 | ornithine cyclodeaminase; Validated | 96.07 | |
| PRK08291 | 330 | ectoine utilization protein EutC; Validated | 96.0 | |
| COG1004 | 414 | Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en | 96.0 | |
| PLN02353 | 473 | probable UDP-glucose 6-dehydrogenase | 95.99 | |
| PLN02477 | 410 | glutamate dehydrogenase | 95.98 | |
| TIGR01850 | 346 | argC N-acetyl-gamma-glutamyl-phosphate reductase, | 95.97 | |
| PRK04207 | 341 | glyceraldehyde-3-phosphate dehydrogenase; Provisio | 95.93 | |
| PRK03515 | 336 | ornithine carbamoyltransferase subunit I; Provisio | 95.92 | |
| PRK06223 | 307 | malate dehydrogenase; Reviewed | 95.89 | |
| PRK00856 | 305 | pyrB aspartate carbamoyltransferase catalytic subu | 95.88 | |
| PF00185 | 158 | OTCace: Aspartate/ornithine carbamoyltransferase, | 95.86 | |
| PRK04284 | 332 | ornithine carbamoyltransferase; Provisional | 95.85 | |
| PF13740 | 76 | ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A. | 95.84 | |
| PRK03369 | 488 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 95.79 | |
| COG1748 | 389 | LYS9 Saccharopine dehydrogenase and related protei | 95.79 | |
| TIGR02356 | 202 | adenyl_thiF thiazole biosynthesis adenylyltransfer | 95.78 | |
| PRK13814 | 310 | pyrB aspartate carbamoyltransferase catalytic subu | 95.74 | |
| cd00650 | 263 | LDH_MDH_like NAD-dependent, lactate dehydrogenase- | 95.72 | |
| PLN02342 | 348 | ornithine carbamoyltransferase | 95.72 | |
| cd04905 | 80 | ACT_CM-PDT C-terminal ACT domain of the bifunction | 95.66 | |
| COG0026 | 375 | PurK Phosphoribosylaminoimidazole carboxylase (NCA | 95.65 | |
| PRK11064 | 415 | wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro | 95.64 | |
| PRK08300 | 302 | acetaldehyde dehydrogenase; Validated | 95.63 | |
| PRK11891 | 429 | aspartate carbamoyltransferase; Provisional | 95.63 | |
| PRK14804 | 311 | ornithine carbamoyltransferase; Provisional | 95.61 | |
| COG0569 | 225 | TrkA K+ transport systems, NAD-binding component [ | 95.6 | |
| TIGR00655 | 280 | PurU formyltetrahydrofolate deformylase. This mode | 95.58 | |
| PRK02102 | 331 | ornithine carbamoyltransferase; Validated | 95.58 | |
| PRK00048 | 257 | dihydrodipicolinate reductase; Provisional | 95.54 | |
| PRK13010 | 289 | purU formyltetrahydrofolate deformylase; Reviewed | 95.54 | |
| TIGR03316 | 357 | ygeW probable carbamoyltransferase YgeW. Members o | 95.52 | |
| PRK12562 | 334 | ornithine carbamoyltransferase subunit F; Provisio | 95.48 | |
| TIGR03215 | 285 | ac_ald_DH_ac acetaldehyde dehydrogenase (acetylati | 95.43 | |
| PRK15182 | 425 | Vi polysaccharide biosynthesis protein TviB; Provi | 95.41 | |
| TIGR01809 | 282 | Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO | 95.4 | |
| PRK01390 | 460 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 95.35 | |
| COG1648 | 210 | CysG Siroheme synthase (precorrin-2 oxidase/ferroc | 95.35 | |
| COG5322 | 351 | Predicted dehydrogenase [General function predicti | 95.32 | |
| COG0281 | 432 | SfcA Malic enzyme [Energy production and conversio | 95.28 | |
| cd04900 | 73 | ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, | 95.25 | |
| COG0334 | 411 | GdhA Glutamate dehydrogenase/leucine dehydrogenase | 95.24 | |
| cd05312 | 279 | NAD_bind_1_malic_enz NAD(P) binding domain of mali | 95.21 | |
| PF01113 | 124 | DapB_N: Dihydrodipicolinate reductase, N-terminus; | 95.2 | |
| cd00762 | 254 | NAD_bind_malic_enz NAD(P) binding domain of malic | 95.2 | |
| PTZ00082 | 321 | L-lactate dehydrogenase; Provisional | 95.19 | |
| cd05292 | 308 | LDH_2 A subgroup of L-lactate dehydrogenases. L-la | 95.14 | |
| PRK14106 | 450 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 95.08 | |
| COG1707 | 218 | ACT domain-containing protein [General function pr | 95.07 | |
| cd00300 | 300 | LDH_like L-lactate dehydrogenase-like enzymes. Mem | 95.06 | |
| PRK06270 | 341 | homoserine dehydrogenase; Provisional | 95.05 | |
| KOG0023 | 360 | consensus Alcohol dehydrogenase, class V [Secondar | 95.05 | |
| COG0771 | 448 | MurD UDP-N-acetylmuramoylalanine-D-glutamate ligas | 95.05 | |
| cd04873 | 70 | ACT_UUR-ACR-like ACT domains of the bacterial sign | 95.01 | |
| cd00757 | 228 | ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1 | 95.0 | |
| PRK07232 | 752 | bifunctional malic enzyme oxidoreductase/phosphotr | 94.99 | |
| PRK11579 | 346 | putative oxidoreductase; Provisional | 94.99 | |
| cd05293 | 312 | LDH_1 A subgroup of L-lactate dehydrogenases. L-la | 94.97 | |
| cd04928 | 68 | ACT_TyrKc Uncharacterized, N-terminal ACT domain o | 94.96 | |
| PRK12548 | 289 | shikimate 5-dehydrogenase; Provisional | 94.93 | |
| PRK00421 | 461 | murC UDP-N-acetylmuramate--L-alanine ligase; Provi | 94.9 | |
| PRK00141 | 473 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 94.88 | |
| PLN02520 | 529 | bifunctional 3-dehydroquinate dehydratase/shikimat | 94.85 | |
| PRK02006 | 498 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 94.85 | |
| PRK02472 | 447 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 94.83 | |
| PRK00066 | 315 | ldh L-lactate dehydrogenase; Reviewed | 94.82 | |
| COG1004 | 414 | Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en | 94.8 | |
| PTZ00079 | 454 | NADP-specific glutamate dehydrogenase; Provisional | 94.78 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 94.78 | |
| PF02254 | 116 | TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg | 94.74 | |
| PRK06019 | 372 | phosphoribosylaminoimidazole carboxylase ATPase su | 94.74 | |
| PRK04523 | 335 | N-acetylornithine carbamoyltransferase; Reviewed | 94.71 | |
| cd02116 | 60 | ACT ACT domains are commonly involved in specifica | 94.63 | |
| cd04925 | 74 | ACT_ACR_2 ACT domain-containing protein which is c | 94.62 | |
| COG0788 | 287 | PurU Formyltetrahydrofolate hydrolase [Nucleotide | 94.6 | |
| PRK09880 | 343 | L-idonate 5-dehydrogenase; Provisional | 94.6 | |
| cd01339 | 300 | LDH-like_MDH L-lactate dehydrogenase-like malate d | 94.58 | |
| cd04899 | 70 | ACT_ACR-UUR-like_2 C-terminal ACT domains of the b | 94.57 | |
| TIGR02964 | 246 | xanthine_xdhC xanthine dehydrogenase accessory pro | 94.57 | |
| PRK00436 | 343 | argC N-acetyl-gamma-glutamyl-phosphate reductase; | 94.54 | |
| PRK12475 | 338 | thiamine/molybdopterin biosynthesis MoeB-like prot | 94.5 | |
| PF00056 | 141 | Ldh_1_N: lactate/malate dehydrogenase, NAD binding | 94.45 | |
| cd04880 | 75 | ACT_AAAH-PDT-like ACT domain of the nonheme iron-d | 94.44 | |
| PRK08192 | 338 | aspartate carbamoyltransferase; Provisional | 94.41 | |
| KOG2304 | 298 | consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t | 94.37 | |
| PRK12749 | 288 | quinate/shikimate dehydrogenase; Reviewed | 94.36 | |
| PRK03659 | 601 | glutathione-regulated potassium-efflux system prot | 94.34 | |
| PRK12862 | 763 | malic enzyme; Reviewed | 94.34 | |
| PRK10669 | 558 | putative cation:proton antiport protein; Provision | 94.32 | |
| PLN02968 | 381 | Probable N-acetyl-gamma-glutamyl-phosphate reducta | 94.28 | |
| cd08230 | 355 | glucose_DH Glucose dehydrogenase. Glucose dehydrog | 94.2 | |
| PRK08306 | 296 | dipicolinate synthase subunit A; Reviewed | 94.2 | |
| PRK01438 | 480 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 94.19 | |
| PRK06027 | 286 | purU formyltetrahydrofolate deformylase; Reviewed | 94.18 | |
| KOG2653 | 487 | consensus 6-phosphogluconate dehydrogenase [Carboh | 94.13 | |
| PRK07200 | 395 | aspartate/ornithine carbamoyltransferase family pr | 94.11 | |
| PRK05690 | 245 | molybdopterin biosynthesis protein MoeB; Provision | 94.07 | |
| cd05297 | 423 | GH4_alpha_glucosidase_galactosidase Glycoside Hydr | 94.03 | |
| PRK13011 | 286 | formyltetrahydrofolate deformylase; Reviewed | 94.0 | |
| COG3288 | 356 | PntA NAD/NADP transhydrogenase alpha subunit [Ener | 93.98 | |
| PRK10637 | 457 | cysG siroheme synthase; Provisional | 93.94 | |
| PRK05708 | 305 | 2-dehydropantoate 2-reductase; Provisional | 93.89 | |
| PRK11589 | 190 | gcvR glycine cleavage system transcriptional repre | 93.89 | |
| COG0440 | 163 | IlvH Acetolactate synthase, small (regulatory) sub | 93.82 | |
| COG0673 | 342 | MviM Predicted dehydrogenases and related proteins | 93.8 | |
| PLN02819 | 1042 | lysine-ketoglutarate reductase/saccharopine dehydr | 93.78 | |
| PRK05562 | 223 | precorrin-2 dehydrogenase; Provisional | 93.72 | |
| PF13380 | 116 | CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5 | 93.7 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 93.69 | |
| PRK12861 | 764 | malic enzyme; Reviewed | 93.64 | |
| PLN02602 | 350 | lactate dehydrogenase | 93.63 | |
| PRK13376 | 525 | pyrB bifunctional aspartate carbamoyltransferase c | 93.63 | |
| PRK04308 | 445 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 93.62 | |
| PRK07688 | 339 | thiamine/molybdopterin biosynthesis ThiF/MoeB-like | 93.6 | |
| PRK03803 | 448 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 93.59 | |
| KOG0022 | 375 | consensus Alcohol dehydrogenase, class III [Second | 93.59 | |
| TIGR00036 | 266 | dapB dihydrodipicolinate reductase. | 93.53 | |
| PF02629 | 96 | CoA_binding: CoA binding domain; InterPro: IPR0037 | 93.33 | |
| TIGR03366 | 280 | HpnZ_proposed putative phosphonate catabolism asso | 93.3 | |
| COG0169 | 283 | AroE Shikimate 5-dehydrogenase [Amino acid transpo | 93.28 | |
| PRK14027 | 283 | quinate/shikimate dehydrogenase; Provisional | 93.17 | |
| PRK04690 | 468 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 93.16 | |
| TIGR02355 | 240 | moeB molybdopterin synthase sulfurylase MoeB. This | 93.14 | |
| TIGR02822 | 329 | adh_fam_2 zinc-binding alcohol dehydrogenase famil | 93.1 | |
| PF13478 | 136 | XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2 | 93.09 | |
| PLN02948 | 577 | phosphoribosylaminoimidazole carboxylase | 93.05 | |
| PRK08644 | 212 | thiamine biosynthesis protein ThiF; Provisional | 93.04 | |
| PRK05086 | 312 | malate dehydrogenase; Provisional | 93.02 | |
| TIGR01851 | 310 | argC_other N-acetyl-gamma-glutamyl-phosphate reduc | 92.83 | |
| PRK10206 | 344 | putative oxidoreductase; Provisional | 92.74 | |
| PF03447 | 117 | NAD_binding_3: Homoserine dehydrogenase, NAD bindi | 92.73 | |
| PRK14805 | 302 | ornithine carbamoyltransferase; Provisional | 92.72 | |
| TIGR01761 | 343 | thiaz-red thiazolinyl imide reductase. This reduct | 92.68 | |
| PRK03806 | 438 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 92.62 | |
| PRK03815 | 401 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 92.58 | |
| PRK03562 | 621 | glutathione-regulated potassium-efflux system prot | 92.58 | |
| cd01486 | 307 | Apg7 Apg7 is an E1-like protein, that activates tw | 92.5 | |
| PF03435 | 386 | Saccharop_dh: Saccharopine dehydrogenase ; InterPr | 92.46 | |
| cd05294 | 309 | LDH-like_MDH_nadp A lactate dehydrogenases-like st | 92.43 | |
| TIGR01161 | 352 | purK phosphoribosylaminoimidazole carboxylase, Pur | 92.39 | |
| cd04927 | 76 | ACT_ACR-like_2 Second ACT domain, of a novel type | 92.38 | |
| PRK01368 | 454 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 92.36 | |
| PRK07877 | 722 | hypothetical protein; Provisional | 92.32 | |
| PF13460 | 183 | NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X | 92.32 | |
| COG1893 | 307 | ApbA Ketopantoate reductase [Coenzyme metabolism] | 92.31 | |
| PRK08762 | 376 | molybdopterin biosynthesis protein MoeB; Validated | 92.3 | |
| PRK05600 | 370 | thiamine biosynthesis protein ThiF; Validated | 92.29 | |
| cd05188 | 271 | MDR Medium chain reductase/dehydrogenase (MDR)/zin | 92.27 | |
| PRK10872 | 743 | relA (p)ppGpp synthetase I/GTP pyrophosphokinase; | 92.25 | |
| TIGR01087 | 433 | murD UDP-N-acetylmuramoylalanine--D-glutamate liga | 92.24 | |
| PLN02586 | 360 | probable cinnamyl alcohol dehydrogenase | 92.24 | |
| TIGR01532 | 325 | E4PD_g-proteo D-erythrose-4-phosphate dehydrogenas | 92.2 | |
| PRK08223 | 287 | hypothetical protein; Validated | 92.12 | |
| TIGR01381 | 664 | E1_like_apg7 E1-like protein-activating enzyme Gsa | 92.1 | |
| COG3830 | 90 | ACT domain-containing protein [Signal transduction | 91.99 | |
| COG2716 | 176 | GcvR Glycine cleavage system regulatory protein [A | 91.98 | |
| PTZ00325 | 321 | malate dehydrogenase; Provisional | 91.87 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 91.86 | |
| PRK06392 | 326 | homoserine dehydrogenase; Provisional | 91.86 | |
| COG1063 | 350 | Tdh Threonine dehydrogenase and related Zn-depende | 91.85 | |
| PRK11863 | 313 | N-acetyl-gamma-glutamyl-phosphate reductase; Provi | 91.83 | |
| PRK05597 | 355 | molybdopterin biosynthesis protein MoeB; Validated | 91.8 | |
| CHL00194 | 317 | ycf39 Ycf39; Provisional | 91.76 | |
| TIGR03201 | 349 | dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co | 91.7 | |
| COG0078 | 310 | ArgF Ornithine carbamoyltransferase [Amino acid tr | 91.59 | |
| PLN02178 | 375 | cinnamyl-alcohol dehydrogenase | 91.37 | |
| PF05368 | 233 | NmrA: NmrA-like family; InterPro: IPR008030 NmrA i | 91.3 | |
| cd04895 | 72 | ACT_ACR_1 ACT domain-containing protein which is c | 91.26 | |
| cd04896 | 75 | ACT_ACR-like_3 ACT domain-containing protein which | 91.24 | |
| cd08281 | 371 | liver_ADH_like1 Zinc-dependent alcohol dehydrogena | 91.17 | |
| cd08239 | 339 | THR_DH_like L-threonine dehydrogenase (TDH)-like. | 91.14 | |
| PRK11589 | 190 | gcvR glycine cleavage system transcriptional repre | 91.11 | |
| KOG4230 | 935 | consensus C1-tetrahydrofolate synthase [Coenzyme t | 91.04 | |
| PLN02272 | 421 | glyceraldehyde-3-phosphate dehydrogenase | 91.01 | |
| COG0540 | 316 | PyrB Aspartate carbamoyltransferase, catalytic cha | 90.94 | |
| cd05283 | 337 | CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnam | 90.87 | |
| cd01487 | 174 | E1_ThiF_like E1_ThiF_like. Member of superfamily o | 90.78 | |
| KOG2663 | 309 | consensus Acetolactate synthase, small subunit [Am | 90.78 | |
| TIGR01772 | 312 | MDH_euk_gproteo malate dehydrogenase, NAD-dependen | 90.72 | |
| PRK12550 | 272 | shikimate 5-dehydrogenase; Reviewed | 90.71 | |
| cd01336 | 325 | MDH_cytoplasmic_cytosolic Cytoplasmic and cytosoli | 90.61 | |
| PRK07411 | 390 | hypothetical protein; Validated | 90.52 | |
| cd01337 | 310 | MDH_glyoxysomal_mitochondrial Glyoxysomal and mito | 90.45 | |
| cd01338 | 322 | MDH_choloroplast_like Chloroplast-like malate dehy | 90.45 | |
| TIGR02853 | 287 | spore_dpaA dipicolinic acid synthetase, A subunit. | 90.41 | |
| PLN00106 | 323 | malate dehydrogenase | 90.33 | |
| cd05290 | 307 | LDH_3 A subgroup of L-lactate dehydrogenases. L-la | 90.23 | |
| PRK14573 | 809 | bifunctional D-alanyl-alanine synthetase A/UDP-N-a | 90.2 | |
| cd00704 | 323 | MDH Malate dehydrogenase. Malate dehydrogenase (MD | 90.2 | |
| cd04906 | 85 | ACT_ThrD-I_1 First of two tandem C-terminal ACT do | 90.18 | |
| PRK15076 | 431 | alpha-galactosidase; Provisional | 90.17 | |
| cd08237 | 341 | ribitol-5-phosphate_DH ribitol-5-phosphate dehydro | 90.15 | |
| PRK08664 | 349 | aspartate-semialdehyde dehydrogenase; Reviewed | 90.11 | |
| PRK02705 | 459 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 90.08 | |
| PRK11092 | 702 | bifunctional (p)ppGpp synthetase II/ guanosine-3', | 90.06 | |
| PRK15057 | 388 | UDP-glucose 6-dehydrogenase; Provisional | 89.95 | |
| PRK12769 | 654 | putative oxidoreductase Fe-S binding subunit; Revi | 89.93 | |
| PLN02740 | 381 | Alcohol dehydrogenase-like | 89.93 | |
| PRK04663 | 438 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 89.88 | |
| COG4007 | 340 | Predicted dehydrogenase related to H2-forming N5,N | 89.86 | |
| PRK06382 | 406 | threonine dehydratase; Provisional | 89.75 | |
| TIGR03451 | 358 | mycoS_dep_FDH mycothiol-dependent formaldehyde deh | 89.73 | |
| TIGR01082 | 448 | murC UDP-N-acetylmuramate--alanine ligase. UDP-N-a | 89.71 | |
| PF00899 | 135 | ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a | 89.6 | |
| PRK12809 | 639 | putative oxidoreductase Fe-S binding subunit; Revi | 89.45 | |
| TIGR01759 | 323 | MalateDH-SF1 malate dehydrogenase. This model repr | 89.21 | |
| PRK07878 | 392 | molybdopterin biosynthesis-like protein MoeZ; Vali | 89.15 | |
| TIGR01202 | 308 | bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl | 89.1 | |
| PF04016 | 147 | DUF364: Domain of unknown function (DUF364); Inter | 89.0 | |
| PRK08374 | 336 | homoserine dehydrogenase; Provisional | 88.83 | |
| PRK05442 | 326 | malate dehydrogenase; Provisional | 88.81 | |
| PRK08040 | 336 | putative semialdehyde dehydrogenase; Provisional | 88.79 |
| >TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-110 Score=926.06 Aligned_cols=522 Identities=47% Similarity=0.746 Sum_probs=492.6
Q ss_pred eEEEecCCCHhHHHHhccc-CcEEEccCCCHhHHhhhcCCceEEEEcCCCCCCHHHHhccCCCceEEEEcCcccCccChh
Q 007512 60 TVLIAEKLGQAGLDLLNEF-ANVDCAYNLSPEELCTKISLCDALIVRSGTKVNRDVFESSAGRLKVVGRAGVGIDNVDLA 138 (600)
Q Consensus 60 ~ilv~~~l~~~~~~~l~~~-~~v~~~~~~~~~el~~~i~~~d~li~~~~~~~~~~~l~~~~~~Lk~I~~~g~G~d~iD~~ 138 (600)
||++++++.++.++.|++. .++.+....+++++.+.++++|++++++.+++++++++++ |+||||+++|+|+||||++
T Consensus 1 ~vli~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~li~~~~~~~~~~~l~~~-~~Lk~I~~~~~G~d~id~~ 79 (525)
T TIGR01327 1 KVLIADPISPDGIDILEDVGVEVDVQTGLSREELLEIIPDYDALIVRSATKVTEEVIAAA-PKLKVIGRAGVGVDNIDIE 79 (525)
T ss_pred CEEEeCCCCHHHHHHHHhcCcEEEeCCCCCHHHHHHHhcCCCEEEEcCCCCcCHHHHhhC-CCceEEEECCcccchhcHH
Confidence 5889999999999988765 3666555567889999999999999998889999999987 6999999999999999999
Q ss_pred HHHhCCceeecCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCccccccccceeccCCEEEEEecChhHHHHHHHhhc
Q 007512 139 AATEFGCLVVNAPTANTVAAAEHGIALLAAMARNVAQADASVKAGKWQRNKYVGVSLVGKTLAVLGFGKVGSEVARRAKG 218 (600)
Q Consensus 139 aa~~~GI~V~n~p~~~~~~vAE~~l~lll~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktiGIIGlG~IG~~vA~~l~~ 218 (600)
+|+++||.|+|+||+|+.+||||+++|||+++|+++++++.+++|+|.+..+.|.+|+||||||||+|.||+++|++|++
T Consensus 80 ~~~~~gI~V~n~pg~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~~~~g~~l~gktvgIiG~G~IG~~vA~~l~~ 159 (525)
T TIGR01327 80 AATARGILVVNAPTGNTISAAEHALAMLLAAARNIPQADASLKEGEWDRKAFMGTELYGKTLGVIGLGRIGSIVAKRAKA 159 (525)
T ss_pred HHHHCCCEEEeCCCcChHHHHHHHHHHHHHHhcCHHHHHHHHHcCCccccccCccccCCCEEEEECCCHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999987677899999999999999999999999999
Q ss_pred CCCEEEEECCCCChhHHHHcCCccc-CHHHHhccCCEEEEecCCCccccccccHhHhccCCCceEEEEccCCccccHHHH
Q 007512 219 LGMHVIAHDPYAPADRARAIGVDLV-SFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVIDEEAL 297 (600)
Q Consensus 219 ~g~~V~~~d~~~~~~~a~~~g~~~~-~l~ell~~aDvV~l~~Pl~~~t~~li~~~~l~~mk~gailvNvarg~ivde~aL 297 (600)
|||+|++|||+.+.+.+.+.|+..+ ++++++++||+|++|+|++++|+++++++.|++||+|++|||+|||+++|++||
T Consensus 160 fG~~V~~~d~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL 239 (525)
T TIGR01327 160 FGMKVLAYDPYISPERAEQLGVELVDDLDELLARADFITVHTPLTPETRGLIGAEELAKMKKGVIIVNCARGGIIDEAAL 239 (525)
T ss_pred CCCEEEEECCCCChhHHHhcCCEEcCCHHHHHhhCCEEEEccCCChhhccCcCHHHHhcCCCCeEEEEcCCCceeCHHHH
Confidence 9999999999876666677787765 899999999999999999999999999999999999999999999999999999
Q ss_pred HHhHhcCCceEEEEeccCCCCCCCCCccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCccccCCCCChh
Q 007512 298 VRALDSGRVAQAALDVFTEEPPPADSKLVQHERVTVTPHLGASTMEAQEGVAIEIAEAVVGALKGELAATAVNAPMVPAE 377 (600)
Q Consensus 298 ~~aL~~g~i~ga~lDv~~~EP~~~~~~L~~~~nvilTPH~~~~t~ea~~~~~~~~~~~l~~~l~g~~~~~~vn~~~i~~~ 377 (600)
++||++|+|+||+||||+.||+ .++|||++||+++|||+|++|.|++++++..+++|+.+|++|+.+.+.||.|.++.+
T Consensus 240 ~~aL~~g~i~gAaLDVf~~EP~-~~~pL~~~~nvi~TPHia~~t~e~~~~~~~~~~~ni~~~~~g~~~~~~vn~~~~~~~ 318 (525)
T TIGR01327 240 YEALEEGHVRAAALDVFEKEPP-TDNPLFDLDNVIATPHLGASTREAQENVATQVAEQVLDALKGLPVPNAVNAPGIDAD 318 (525)
T ss_pred HHHHHcCCeeEEEEecCCCCCC-CCChhhcCCCeEECCCccccHHHHHHHHHHHHHHHHHHHHcCCCCCceeeCCCCCch
Confidence 9999999999999999999996 589999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcccchHHHHHHHHHHHHHHhcCCCCceEEEEEEeecCCCCccccccccHHHHHhhchhhhccchhhccHHHHHhhcC
Q 007512 378 VLTELKPFVELAEKLGRLAVQLVAGGSGVKTVKVSYASSRAPDDLDTRLLRAMITKGLIEPISDVFVNLVNADYTAKQRG 457 (600)
Q Consensus 378 ~~~~~~p~~~la~~lG~l~~qL~~g~~~~k~v~i~~~Gs~a~~~~~~~~~~~a~l~GlL~~~~~~~vn~vnA~~~A~e~G 457 (600)
.++.++||+.||+|||++++||+++ .+++++++|+|||+ . +++|++++|+++|+|+...++++|++||+.+|+++|
T Consensus 319 ~~~~~~~~~~la~riG~~a~ql~~~--~~~~v~i~~~GsfA-~-~~~~~~~~a~l~GlL~~~~~~d~~~~nA~~iA~e~G 394 (525)
T TIGR01327 319 VMEKLKPYLDLAEKLGKLAGQLLDG--AVQSVEVTYRGELA-T-ENSEPLTRAALKGLLSPVLDDEVNMVNAPAVAKERG 394 (525)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHcCC--CceEEEEEEEcchh-c-ccccHHHHHHHHHhCccccCCCccccCHHHHHHHcC
Confidence 9999999999999999999999998 89999999999998 4 599999999999999888776799999999999999
Q ss_pred ceEEEEEeecCCCCCCCCceEEEEEeecccccccccCCCcEEEEEEEEe-CCceEEEEEcceEEEeecCccEEEEEecCC
Q 007512 458 LRLTEERILLDGSPESPLEFIQVQIANVESKFASAISESGEIKVEGRVK-DGVPHLTKVGSFEVDVSLEGSIILCRQVDQ 536 (600)
Q Consensus 458 I~v~~~~~~~~~~~~~~~n~i~v~~~~~~~~~~~~~~~~~~~~v~Gsv~-gG~~~I~~Idgf~v~~~g~~~~Liv~~~D~ 536 (600)
|++.|.+.+.+ ..|||++++++++ ++++++|.|+++ ||+++|++||||+|+++|++|+|++.|.|+
T Consensus 395 I~v~~~~~~~~---~~hpNtv~i~l~~----------~~~~~~v~G~s~gGg~~~I~~ing~~v~~~~~~~~li~~~~D~ 461 (525)
T TIGR01327 395 ITVEESKSESS---PDYKNYLSVTVTG----------DSGTVSVAGTVFGGFSPRIVEIDGFHVDLEPEGIMLIILHLDK 461 (525)
T ss_pred CEEEEEEccCC---CCCCCEEEEEEEe----------CCcEEEEEEEEecCCcEEEEEECCEEEEEecCccEEEEEecCc
Confidence 99999887644 3899999999984 678999999655 579999999999999999999999999999
Q ss_pred CCChhhHHhhhhcCCccccceEeeeecCCCcEEEEEEeCCCCcHHHHHHHhcCCCcceEEEeeC
Q 007512 537 PGMIGTVGSILGSENVNVSFMSVGRVAPRKHAVMAIGVDEQPRKETLKKIGDVPAIEEFVFLKL 600 (600)
Q Consensus 537 pG~Ia~V~~iL~~~~INIa~m~v~R~~~g~~al~~i~~D~~~~~~~l~~l~~~~~v~~v~~i~l 600 (600)
||+|+.|+++|++++|||++|+++|..+|++|+|+|++|++++++++++|+++++|.++++++|
T Consensus 462 pG~I~~v~~~L~~~~iNIa~m~~~R~~~g~~al~~i~~D~~v~~~~l~~i~~~~~i~~v~~i~~ 525 (525)
T TIGR01327 462 PGVIGKVGTLLGTAGINIASMQLGRKEKGGEALMLLSLDQPVPDEVLEEIKAIPDILSVFVVDL 525 (525)
T ss_pred CCcchHHHhHHhhcCCChHHcEeecCCCCCeEEEEEEcCCCCCHHHHHHHhcCCCccEEEEEeC
Confidence 9999999999999999999999999999999999999999999999999999999999999986
|
This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli. |
| >PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-109 Score=917.66 Aligned_cols=523 Identities=49% Similarity=0.761 Sum_probs=492.6
Q ss_pred CeEEEecCCCHhHHHHhccc--CcEEEccCCCHhHHhhhcCCceEEEEcCCCCCCHHHHhccCCCceEEEEcCcccCccC
Q 007512 59 PTVLIAEKLGQAGLDLLNEF--ANVDCAYNLSPEELCTKISLCDALIVRSGTKVNRDVFESSAGRLKVVGRAGVGIDNVD 136 (600)
Q Consensus 59 ~~ilv~~~l~~~~~~~l~~~--~~v~~~~~~~~~el~~~i~~~d~li~~~~~~~~~~~l~~~~~~Lk~I~~~g~G~d~iD 136 (600)
|||++++++.+..++.|++. .++.+....+++++.+.++++|++++++.+++++++++++ |+||||+++|+|+||||
T Consensus 1 m~ili~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~-~~Lk~I~~~~~G~d~id 79 (526)
T PRK13581 1 MKVLVSDPISPAGLEILKDAPGVEVDVKTGLDKEELLEIIGDYDALIVRSATKVTAEVLEAA-KNLKVIGRAGVGVDNVD 79 (526)
T ss_pred CeEEEeCCCCHHHHHHHhccCCeEEEeCCCCCHHHHHHHhcCCCEEEEcCCCCCCHHHHhhC-CCCeEEEECCccccccc
Confidence 47999999999998988875 3555444567889999999999999988789999999987 69999999999999999
Q ss_pred hhHHHhCCceeecCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCccccccccceeccCCEEEEEecChhHHHHHHHh
Q 007512 137 LAAATEFGCLVVNAPTANTVAAAEHGIALLAAMARNVAQADASVKAGKWQRNKYVGVSLVGKTLAVLGFGKVGSEVARRA 216 (600)
Q Consensus 137 ~~aa~~~GI~V~n~p~~~~~~vAE~~l~lll~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktiGIIGlG~IG~~vA~~l 216 (600)
+++|+++||.|+|+|++|+.+||||++++||+++|+++++++.+++|+|.+..+.|.+|+||||||||+|.||+.+|+++
T Consensus 80 ~~~~~~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~W~~~~~~g~~l~gktvgIiG~G~IG~~vA~~l 159 (526)
T PRK13581 80 VPAATRRGIIVVNAPTGNTISAAEHTIALMLALARNIPQAHASLKAGKWERKKFMGVELYGKTLGIIGLGRIGSEVAKRA 159 (526)
T ss_pred HHHHHHCCCEEEeCCCCChHHHHHHHHHHHHHHHcCHHHHHHHHHcCCCCccCccccccCCCEEEEECCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998766678999999999999999999999999
Q ss_pred hcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEecCCCccccccccHhHhccCCCceEEEEccCCccccHHH
Q 007512 217 KGLGMHVIAHDPYAPADRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVIDEEA 296 (600)
Q Consensus 217 ~~~g~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Pl~~~t~~li~~~~l~~mk~gailvNvarg~ivde~a 296 (600)
++|||+|++|||+.+.+.+...|+..+++++++++||+|++|+|++++|+++++++.|++||+|++|||+|||+++|++|
T Consensus 160 ~~fG~~V~~~d~~~~~~~~~~~g~~~~~l~ell~~aDiV~l~lP~t~~t~~li~~~~l~~mk~ga~lIN~aRG~~vde~a 239 (526)
T PRK13581 160 KAFGMKVIAYDPYISPERAAQLGVELVSLDELLARADFITLHTPLTPETRGLIGAEELAKMKPGVRIINCARGGIIDEAA 239 (526)
T ss_pred HhCCCEEEEECCCCChhHHHhcCCEEEcHHHHHhhCCEEEEccCCChHhhcCcCHHHHhcCCCCeEEEECCCCceeCHHH
Confidence 99999999999987666667778888899999999999999999999999999999999999999999999999999999
Q ss_pred HHHhHhcCCceEEEEeccCCCCCCCCCccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCccccCCCCCh
Q 007512 297 LVRALDSGRVAQAALDVFTEEPPPADSKLVQHERVTVTPHLGASTMEAQEGVAIEIAEAVVGALKGELAATAVNAPMVPA 376 (600)
Q Consensus 297 L~~aL~~g~i~ga~lDv~~~EP~~~~~~L~~~~nvilTPH~~~~t~ea~~~~~~~~~~~l~~~l~g~~~~~~vn~~~i~~ 376 (600)
|++||++|+|+||++|||+.||++ ++|||++||+++|||+|++|.|++++++..+++|+.+|++|+++.+.||.|.+++
T Consensus 240 L~~aL~~g~i~gAaLDVf~~EP~~-~~pL~~~~nvilTPHia~~t~e~~~~~~~~~~~ni~~~~~g~~~~~~vn~~~~~~ 318 (526)
T PRK13581 240 LAEALKSGKVAGAALDVFEKEPPT-DSPLFELPNVVVTPHLGASTAEAQENVAIQVAEQVIDALRGGPVPNAVNLPSITA 318 (526)
T ss_pred HHHHHhcCCeeEEEEecCCCCCCC-CchhhcCCCeeEcCccccchHHHHHHHHHHHHHHHHHHHcCCCcCceeeCCCCch
Confidence 999999999999999999999975 8999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcccchHHHHHHHHHHHHHHhcCCCCceEEEEEEeecCCCCccccccccHHHHHhhchhhhccchhhccHHHHHhhc
Q 007512 377 EVLTELKPFVELAEKLGRLAVQLVAGGSGVKTVKVSYASSRAPDDLDTRLLRAMITKGLIEPISDVFVNLVNADYTAKQR 456 (600)
Q Consensus 377 ~~~~~~~p~~~la~~lG~l~~qL~~g~~~~k~v~i~~~Gs~a~~~~~~~~~~~a~l~GlL~~~~~~~vn~vnA~~~A~e~ 456 (600)
+..++++||+.+|+|||++++||+++ .+++++++|+|||+ .++. +++++|+++|+|+...++++|++||+.+|+++
T Consensus 319 ~~~~~~~~~~~la~riG~~a~ql~~~--~~~~v~i~~~Gsfa-~t~~-~~~d~A~l~GlLg~~~dd~~~~~nA~~iA~e~ 394 (526)
T PRK13581 319 EEAEKLKPYLDLAEKLGSLAAQLADG--PIKSVEITYRGELA-EEDT-EPLTAAALKGLLSPVLGERVNYVNAPLLAKER 394 (526)
T ss_pred hhhHHhHHHHHHHHHHHHHHHHHcCC--CceEEEEEEecccc-cccc-cHHHHHHHHHhCccccCCCccccCHHHHHHHc
Confidence 99999999999999999999999988 89999999999998 7776 49999999999988776669999999999999
Q ss_pred CceEEEEEeecCCCCCCCCceEEEEEeecccccccccCCCcEEEEEEEEe-CCceEEEEEcceEEEeecCccEEEEEecC
Q 007512 457 GLRLTEERILLDGSPESPLEFIQVQIANVESKFASAISESGEIKVEGRVK-DGVPHLTKVGSFEVDVSLEGSIILCRQVD 535 (600)
Q Consensus 457 GI~v~~~~~~~~~~~~~~~n~i~v~~~~~~~~~~~~~~~~~~~~v~Gsv~-gG~~~I~~Idgf~v~~~g~~~~Liv~~~D 535 (600)
||+++|.+.+.+ ..|||++++++++ ++++++|.|+++ ||.++|++||||+|+++|++|+|++.|+|
T Consensus 395 GI~~~~~~~~~~---~~hpNtv~i~l~~----------~~~~~~v~G~s~ggg~~~I~~ing~~v~~~~~~~~li~~~~D 461 (526)
T PRK13581 395 GIEVEESKSEES---PDYSNLITVTVTT----------DDGERSVAGTVFGDGEPRIVEIDGYRVDAKPEGHMLIIRNRD 461 (526)
T ss_pred CCEEEEEEecCC---CCCCCEEEEEEEe----------CCeEEEEEEEEecCCceEEEEECCEEEEeeCCceEEEEEeCC
Confidence 999999888644 3899999999984 667999999655 57899999999999999999999999999
Q ss_pred CCCChhhHHhhhhcCCccccceEeeeecCCCcEEEEEEeCCCCcHHHHHHHhcCCCcceEEEeeC
Q 007512 536 QPGMIGTVGSILGSENVNVSFMSVGRVAPRKHAVMAIGVDEQPRKETLKKIGDVPAIEEFVFLKL 600 (600)
Q Consensus 536 ~pG~Ia~V~~iL~~~~INIa~m~v~R~~~g~~al~~i~~D~~~~~~~l~~l~~~~~v~~v~~i~l 600 (600)
+||+|+.|+++|++++|||++|+++|..+|+.|+|+|++|++++++++++|+++++|.++++++|
T Consensus 462 ~pG~I~~v~~~L~~~~iNIa~m~~~r~~~g~~al~~i~~D~~v~~~~l~~i~~~~~i~~~~~i~~ 526 (526)
T PRK13581 462 RPGVIGKVGTLLGEAGINIAGMQLGRREAGGEALMVLSVDDPVPEEVLEELRALPGILSAKAVEL 526 (526)
T ss_pred cCChhHHHHHHHhhcCCCchhcEeccCCCCCeEEEEEECCCCCCHHHHHHHhcCCCcceEEEEeC
Confidence 99999999999999999999999999999999999999999999999999999999999999986
|
|
| >KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-86 Score=669.56 Aligned_cols=396 Identities=62% Similarity=0.881 Sum_probs=381.2
Q ss_pred eEEEecCCCHhHHHHhcccC-cEEEccCCCHhHHhhhcCCceEEEEcCCCCCCHHHHhccCCCceEEEEcCcccCccChh
Q 007512 60 TVLIAEKLGQAGLDLLNEFA-NVDCAYNLSPEELCTKISLCDALIVRSGTKVNRDVFESSAGRLKVVGRAGVGIDNVDLA 138 (600)
Q Consensus 60 ~ilv~~~l~~~~~~~l~~~~-~v~~~~~~~~~el~~~i~~~d~li~~~~~~~~~~~l~~~~~~Lk~I~~~g~G~d~iD~~ 138 (600)
+||+++++++.++++|++.+ +|++.+.++.||+...++++|++++|+.|++|+++|+.+..+||+|+|+|+|+||+|++
T Consensus 8 ~il~~e~~~~~~~~~l~~~g~~v~~~~~~~~eel~~~i~~~~aviVrs~tkvtadvl~aa~~~lkvVgrag~G~dNVDL~ 87 (406)
T KOG0068|consen 8 KILVAESLDQACIEILKDNGYQVEFKKNLSLEELIEKIKDCDALIVRSKTKVTADVLEAAAGGLKVVGRAGIGVDNVDLK 87 (406)
T ss_pred eEEEecccchHHHHHHHhcCceEEEeccCCHHHHHHHhccCCEEEEEeCCeecHHHHHhhcCCeEEEEecccCccccChh
Confidence 89999999999999999987 89999999999999999999999999999999999996667999999999999999999
Q ss_pred HHHhCCceeecCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCccccccccceeccCCEEEEEecChhHHHHHHHhhc
Q 007512 139 AATEFGCLVVNAPTANTVAAAEHGIALLAAMARNVAQADASVKAGKWQRNKYVGVSLVGKTLAVLGFGKVGSEVARRAKG 218 (600)
Q Consensus 139 aa~~~GI~V~n~p~~~~~~vAE~~l~lll~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktiGIIGlG~IG~~vA~~l~~ 218 (600)
+|+++||.|+|+|.+|+.++|||+++++++++|+++++..+||+|+|++..+.|.+|+|||+||+|+|+||+.+|+++++
T Consensus 88 AAte~gi~Vvn~P~~Ns~saAEltigli~SLaR~i~~A~~s~k~g~wnr~~~~G~el~GKTLgvlG~GrIGseVA~r~k~ 167 (406)
T KOG0068|consen 88 AATENGILVVNTPTANSRSAAELTIGLILSLARQIGQASASMKEGKWNRVKYLGWELRGKTLGVLGLGRIGSEVAVRAKA 167 (406)
T ss_pred hHHhCCeEEEeCCCCChHHHHHHHHHHHHHHhhhcchhheeeecCceeecceeeeEEeccEEEEeecccchHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEecCCCccccccccHhHhccCCCceEEEEccCCccccHHHHH
Q 007512 219 LGMHVIAHDPYAPADRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVIDEEALV 298 (600)
Q Consensus 219 ~g~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Pl~~~t~~li~~~~l~~mk~gailvNvarg~ivde~aL~ 298 (600)
+||+|++|||..+.+.+.+.|++.++++|+++.||||++|+|++|+|++|+|.+.|++||+|+.+||++||++||+.+|+
T Consensus 168 ~gm~vI~~dpi~~~~~~~a~gvq~vsl~Eil~~ADFitlH~PLtP~T~~lin~~tfA~mKkGVriIN~aRGGvVDe~ALv 247 (406)
T KOG0068|consen 168 MGMHVIGYDPITPMALAEAFGVQLVSLEEILPKADFITLHVPLTPSTEKLLNDETFAKMKKGVRIINVARGGVVDEPALV 247 (406)
T ss_pred cCceEEeecCCCchHHHHhccceeeeHHHHHhhcCEEEEccCCCcchhhccCHHHHHHhhCCcEEEEecCCceechHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHhcCCceEEEEeccCCCCCCC--CCccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCccccCCCCCh
Q 007512 299 RALDSGRVAQAALDVFTEEPPPA--DSKLVQHERVTVTPHLGASTMEAQEGVAIEIAEAVVGALKGELAATAVNAPMVPA 376 (600)
Q Consensus 299 ~aL~~g~i~ga~lDv~~~EP~~~--~~~L~~~~nvilTPH~~~~t~ea~~~~~~~~~~~l~~~l~g~~~~~~vn~~~i~~ 376 (600)
+||++|+++||++|||+.||+.. ++.|..+|||++|||+|++|.|+|.+++.++++++.+|++| .....||.|.++.
T Consensus 248 ~Al~sG~vaGaAlDVy~~Epp~~~~~~~Lv~hpnVi~TpHlgasT~EAq~~iaievaea~~~~~~~-~~~g~Vna~~v~~ 326 (406)
T KOG0068|consen 248 RALDSGQVAGAALDVYPEEPPKNGWDSELVSHPNVIVTPHLGASTEEAQSRIAIEVAEAVSDYING-NSAGSVNAPEVAL 326 (406)
T ss_pred HHHhcCcccceeeecccCCCCccchhHHHhcCCceeecCccccchHHHHHHHHHHHHHHHHHHhcc-Cccceechhhhhh
Confidence 99999999999999999999754 78999999999999999999999999999999999999999 6789999999999
Q ss_pred hhhhcccchHHHHHHHHHHHHHHhcCCCCceEEEEEEeecCCCCccccccccHHHHHhhchhhhccchhhccHHHHHhhc
Q 007512 377 EVLTELKPFVELAEKLGRLAVQLVAGGSGVKTVKVSYASSRAPDDLDTRLLRAMITKGLIEPISDVFVNLVNADYTAKQR 456 (600)
Q Consensus 377 ~~~~~~~p~~~la~~lG~l~~qL~~g~~~~k~v~i~~~Gs~a~~~~~~~~~~~a~l~GlL~~~~~~~vn~vnA~~~A~e~ 456 (600)
+...+++||+.+++++||++.|++.|.++...+..+|.+.- +.+++++.+.+.+|+.+++.+-.+|++|+..++++|
T Consensus 327 ~~l~~~~~~~~~a~~l~r~~~~~~~~~~~~~~~~~~~~s~~---~~d~~~l~A~i~~~~~e~i~~~~~nLvn~~~~~k~r 403 (406)
T KOG0068|consen 327 ESLTELKPNIVLAEKLGRLVPGVLKGVNGVLSVHNIYKSFS---DGDIALLRADISKGIIEPIKDIYVNLVNADAKAKQR 403 (406)
T ss_pred hhhhccCchhHHHHHHhhhhHHHhcCCccceeeeehhhhcc---ccceeeeHHHHhccCcchHHHHHHHHhccchhhhhh
Confidence 99999999999999999999999998767777777776543 478999999999999999999899999999999999
Q ss_pred Cce
Q 007512 457 GLR 459 (600)
Q Consensus 457 GI~ 459 (600)
|++
T Consensus 404 ~l~ 406 (406)
T KOG0068|consen 404 GLY 406 (406)
T ss_pred ccC
Confidence 974
|
|
| >PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-74 Score=619.05 Aligned_cols=394 Identities=30% Similarity=0.455 Sum_probs=352.8
Q ss_pred CCCCCeEEEecCCCHhHHHHhccc-C-cEEEc-cCCCHhHHhhhcCCceEEEEcCCCCCCHHHHhccCCCceEEEEcCcc
Q 007512 55 ISSKPTVLIAEKLGQAGLDLLNEF-A-NVDCA-YNLSPEELCTKISLCDALIVRSGTKVNRDVFESSAGRLKVVGRAGVG 131 (600)
Q Consensus 55 ~~~~~~ilv~~~l~~~~~~~l~~~-~-~v~~~-~~~~~~el~~~i~~~d~li~~~~~~~~~~~l~~~~~~Lk~I~~~g~G 131 (600)
++.|+||++++.+.++..+.|++. . ++... ...+++++.+.+.++|++++++.+++++++++++ |+||||+++|+|
T Consensus 7 ~~~~~~ili~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~l~~~-~~Lk~I~~~~~G 85 (409)
T PRK11790 7 PKDKIKFLLLEGVHQSAVEVLRAAGYTNIEYHKGALDEEELIEAIKDAHFIGIRSRTQLTEEVLAAA-EKLVAIGCFCIG 85 (409)
T ss_pred CCCCeEEEEECCCCHHHHHHHHhcCCceEEECCCCCCHHHHHHHcCCCCEEEEeCCCCCCHHHHhhC-CCCeEEEECcee
Confidence 556789999999999988888765 3 55443 2356788989999999998888788999999987 699999999999
Q ss_pred cCccChhHHHhCCceeecCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCccccccccceeccCCEEEEEecChhHHH
Q 007512 132 IDNVDLAAATEFGCLVVNAPTANTVAAAEHGIALLAAMARNVAQADASVKAGKWQRNKYVGVSLVGKTLAVLGFGKVGSE 211 (600)
Q Consensus 132 ~d~iD~~aa~~~GI~V~n~p~~~~~~vAE~~l~lll~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktiGIIGlG~IG~~ 211 (600)
+||||+++|+++||.|+|+||+|+.+||||++++||+++|+++++++.+++|+|.+..+.|.+|+|||+||||+|.||+.
T Consensus 86 ~d~id~~~~~~~gI~V~n~pg~~~~aVAE~~i~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~L~gktvGIiG~G~IG~~ 165 (409)
T PRK11790 86 TNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGEIILLLRGIPEKNAKAHRGGWNKSAAGSFEVRGKTLGIVGYGHIGTQ 165 (409)
T ss_pred cccccHHHHHhCCCEEEeCCCCChHHHHHHHHHHHHHHHcChHHHHHHHHcCcccccccCcccCCCCEEEEECCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999987656689999999999999999999
Q ss_pred HHHHhhcCCCEEEEECCCCChhHHHHcCCcc-cCHHHHhccCCEEEEecCCCccccccccHhHhccCCCceEEEEccCCc
Q 007512 212 VARRAKGLGMHVIAHDPYAPADRARAIGVDL-VSFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGG 290 (600)
Q Consensus 212 vA~~l~~~g~~V~~~d~~~~~~~a~~~g~~~-~~l~ell~~aDvV~l~~Pl~~~t~~li~~~~l~~mk~gailvNvarg~ 290 (600)
+|+++++|||+|++|||+... ...++.. .++++++++||+|++|+|++++|+++++++.|++||+|++|||+|||+
T Consensus 166 vA~~~~~fGm~V~~~d~~~~~---~~~~~~~~~~l~ell~~sDiVslh~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~ 242 (409)
T PRK11790 166 LSVLAESLGMRVYFYDIEDKL---PLGNARQVGSLEELLAQSDVVSLHVPETPSTKNMIGAEELALMKPGAILINASRGT 242 (409)
T ss_pred HHHHHHHCCCEEEEECCCccc---ccCCceecCCHHHHHhhCCEEEEcCCCChHHhhccCHHHHhcCCCCeEEEECCCCc
Confidence 999999999999999986421 1123443 489999999999999999999999999999999999999999999999
Q ss_pred cccHHHHHHhHhcCCceEEEEeccCCCCCCC----CCccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCC
Q 007512 291 VIDEEALVRALDSGRVAQAALDVFTEEPPPA----DSKLVQHERVTVTPHLGASTMEAQEGVAIEIAEAVVGALKGELAA 366 (600)
Q Consensus 291 ivde~aL~~aL~~g~i~ga~lDv~~~EP~~~----~~~L~~~~nvilTPH~~~~t~ea~~~~~~~~~~~l~~~l~g~~~~ 366 (600)
+||++||+++|++|+|+||++|||+.||++. ++|||.+||+++|||+|++|.|++++++..+++|+.+|++|+.+.
T Consensus 243 ~vde~aL~~aL~~g~i~gaalDVf~~EP~~~~~~~~~pL~~~~nvilTPHia~~t~ea~~~~~~~~~~nl~~~~~~~~~~ 322 (409)
T PRK11790 243 VVDIDALADALKSGHLAGAAIDVFPVEPKSNGDPFESPLRGLDNVILTPHIGGSTQEAQENIGLEVAGKLVKYSDNGSTL 322 (409)
T ss_pred ccCHHHHHHHHHcCCceEEEEcCCCCCCCCccccccchhhcCCCEEECCcCCCCHHHHHHHHHHHHHHHHHHHHcCCCcC
Confidence 9999999999999999999999999999876 369999999999999999999999999999999999999988887
Q ss_pred ccccCCCCChhhhhcccchHHHHHHHHHHHHHHhcCCCCceEEEEEEeecCCCCccccccccHHHHHhhchhhhccchhh
Q 007512 367 TAVNAPMVPAEVLTELKPFVELAEKLGRLAVQLVAGGSGVKTVKVSYASSRAPDDLDTRLLRAMITKGLIEPISDVFVNL 446 (600)
Q Consensus 367 ~~vn~~~i~~~~~~~~~p~~~la~~lG~l~~qL~~g~~~~k~v~i~~~Gs~a~~~~~~~~~~~a~l~GlL~~~~~~~vn~ 446 (600)
+.||.|
T Consensus 323 ~~vn~~-------------------------------------------------------------------------- 328 (409)
T PRK11790 323 SAVNFP-------------------------------------------------------------------------- 328 (409)
T ss_pred cceecc--------------------------------------------------------------------------
Confidence 777752
Q ss_pred ccHHHHHhhcCceEEEEEeecCCCCCCCCceEEEEEeecccccccccCCCcEEEEEEEEeCCceEEEEEcceEEEeecCc
Q 007512 447 VNADYTAKQRGLRLTEERILLDGSPESPLEFIQVQIANVESKFASAISESGEIKVEGRVKDGVPHLTKVGSFEVDVSLEG 526 (600)
Q Consensus 447 vnA~~~A~e~GI~v~~~~~~~~~~~~~~~n~i~v~~~~~~~~~~~~~~~~~~~~v~Gsv~gG~~~I~~Idgf~v~~~g~~ 526 (600)
.+ ..+ .. ...
T Consensus 329 ------------~~-----~~~----~~-------------------------------------------------~~~ 338 (409)
T PRK11790 329 ------------EV-----SLP----EH-------------------------------------------------PGG 338 (409)
T ss_pred ------------cc-----ccC----CC-------------------------------------------------CCC
Confidence 00 000 00 016
Q ss_pred cEEEEEecCCCCChhhHHhhhhcCCccccceEeeeecCCCcEEEEEEeCCCCcHHHHHHHhcCCCcceEEEe
Q 007512 527 SIILCRQVDQPGMIGTVGSILGSENVNVSFMSVGRVAPRKHAVMAIGVDEQPRKETLKKIGDVPAIEEFVFL 598 (600)
Q Consensus 527 ~~Liv~~~D~pG~Ia~V~~iL~~~~INIa~m~v~R~~~g~~al~~i~~D~~~~~~~l~~l~~~~~v~~v~~i 598 (600)
|.|++.|+|+||+|++|+++|++++|||++|++.| +++.|+|+|++|++++++++++|+++++|.+++++
T Consensus 339 ~rlii~h~d~pG~ia~it~~l~~~~iNI~~m~~~~--~~~~A~~iie~D~~~~~~~~~~i~~i~~v~~v~~~ 408 (409)
T PRK11790 339 HRLLHIHENRPGVLAAINQIFAEQGINIAAQYLQT--DGEIGYVVIDVDADYAEEALDALKAIPGTIRARLL 408 (409)
T ss_pred ceEEEEeCCCCCHHHHHHHHHHhcCCCHHHheecc--CCCEEEEEEEeCCCCcHHHHHHHHcCCCeEEEEEe
Confidence 78899999999999999999999999999999975 45899999999999999999999999999999876
|
|
| >COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-71 Score=578.66 Aligned_cols=316 Identities=48% Similarity=0.713 Sum_probs=293.3
Q ss_pred CCCeEEEecCCCHhHHHHhcccC--cEEEccCCCHhHHhhhcCCceEEEEcCCCCCCHHHHhccCCCceEEEEcCcccCc
Q 007512 57 SKPTVLIAEKLGQAGLDLLNEFA--NVDCAYNLSPEELCTKISLCDALIVRSGTKVNRDVFESSAGRLKVVGRAGVGIDN 134 (600)
Q Consensus 57 ~~~~ilv~~~l~~~~~~~l~~~~--~v~~~~~~~~~el~~~i~~~d~li~~~~~~~~~~~l~~~~~~Lk~I~~~g~G~d~ 134 (600)
.++++++++.+.+..++.+.... ++......+.+++.+.+.++|++++ +.+++++++++.+ ++||+|+++|+|+||
T Consensus 2 ~~~~vl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~d~~~~-~~~~v~~~~l~~~-~~Lk~I~~~g~Gvd~ 79 (324)
T COG0111 2 MMIKVLVTDPLAPDALEELLAAYDVEVPDGPDLDEEELLEALADADALIV-SVTPVTEEVLAAA-PNLKAIGRAGAGVDN 79 (324)
T ss_pred CcceeeccCccCHHHHHHHHhccccccccccccchHHHHhhcccCcEEEE-ecCCCCHHHHhhC-CCceEEEEccccccc
Confidence 57899999999999999887642 3333455677888999999999999 8899999999997 699999999999999
Q ss_pred cChhHHHhCCceeecCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCccccccccceeccCCEEEEEecChhHHHHHH
Q 007512 135 VDLAAATEFGCLVVNAPTANTVAAAEHGIALLAAMARNVAQADASVKAGKWQRNKYVGVSLVGKTLAVLGFGKVGSEVAR 214 (600)
Q Consensus 135 iD~~aa~~~GI~V~n~p~~~~~~vAE~~l~lll~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktiGIIGlG~IG~~vA~ 214 (600)
||+++++++||.|+|+|++|+.+||||+++++|+++|+++.+++++++|.|++..+.|.+|+|||+||||+|.||+.+|+
T Consensus 80 id~~~~~~~gi~V~nap~~na~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~~g~el~gkTvGIiG~G~IG~~va~ 159 (324)
T COG0111 80 IDLEAATKRGILVVNAPGGNAISVAELVLALLLALARRIPDADASQRRGEWDRKAFRGTELAGKTVGIIGLGRIGRAVAK 159 (324)
T ss_pred cCHHHHhhcCCEEEeCCCcchHHHHHHHHHHHHHHhcCchhhHHHHHcCCccccccccccccCCEEEEECCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999778899999999999999999999999
Q ss_pred HhhcCCCEEEEECCCCChhHHHHcCCc-ccCHHHHhccCCEEEEecCCCccccccccHhHhccCCCceEEEEccCCcccc
Q 007512 215 RAKGLGMHVIAHDPYAPADRARAIGVD-LVSFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVID 293 (600)
Q Consensus 215 ~l~~~g~~V~~~d~~~~~~~a~~~g~~-~~~l~ell~~aDvV~l~~Pl~~~t~~li~~~~l~~mk~gailvNvarg~ivd 293 (600)
++++|||+|++|||+.+.+.+...++. ..+|+++|++||||++|+|+|++|++|||++.|++||+|++|||||||++||
T Consensus 160 ~l~afgm~v~~~d~~~~~~~~~~~~~~~~~~Ld~lL~~sDiv~lh~PlT~eT~g~i~~~~~a~MK~gailIN~aRG~vVd 239 (324)
T COG0111 160 RLKAFGMKVIGYDPYSPRERAGVDGVVGVDSLDELLAEADILTLHLPLTPETRGLINAEELAKMKPGAILINAARGGVVD 239 (324)
T ss_pred HHHhCCCeEEEECCCCchhhhccccceecccHHHHHhhCCEEEEcCCCCcchhcccCHHHHhhCCCCeEEEECCCcceec
Confidence 999999999999998866655555554 4579999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhHhcCCceEEEEeccCCCCCCCCCccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCccccCCC
Q 007512 294 EEALVRALDSGRVAQAALDVFTEEPPPADSKLVQHERVTVTPHLGASTMEAQEGVAIEIAEAVVGALKGELAATAVNAPM 373 (600)
Q Consensus 294 e~aL~~aL~~g~i~ga~lDv~~~EP~~~~~~L~~~~nvilTPH~~~~t~ea~~~~~~~~~~~l~~~l~g~~~~~~vn~~~ 373 (600)
++||++||++|+|+||++|||+.||++.++|||++|||++|||+|++|.|++++++.++++|+.+|++|..+.+ |.|.
T Consensus 240 e~aL~~AL~~G~i~gA~lDVf~~EPl~~~~pL~~~pnV~~TPHia~~T~ea~~~~~~~~~~~i~~~l~g~~~~~--~~~~ 317 (324)
T COG0111 240 EDALLAALDSGKIAGAALDVFEEEPLPADSPLWDLPNVILTPHIGGSTDEAQERVAEIVAENIVRYLAGGPVVN--NAPE 317 (324)
T ss_pred HHHHHHHHHcCCcceEEecCCCCCCCCCCChhhcCCCeEECCcccccCHHHHHHHHHHHHHHHHHHHcCCCCCC--Cccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999877 6665
Q ss_pred CCh
Q 007512 374 VPA 376 (600)
Q Consensus 374 i~~ 376 (600)
++.
T Consensus 318 v~~ 320 (324)
T COG0111 318 VDL 320 (324)
T ss_pred ccc
Confidence 543
|
|
| >PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-68 Score=558.75 Aligned_cols=312 Identities=30% Similarity=0.499 Sum_probs=288.6
Q ss_pred CCeEEEecCCCHhHHHHhcccCcEEEcc---CCCHhHHhhhcCCceEEEEcCCCCCCHHHHhccCCCceEEEEcCcccCc
Q 007512 58 KPTVLIAEKLGQAGLDLLNEFANVDCAY---NLSPEELCTKISLCDALIVRSGTKVNRDVFESSAGRLKVVGRAGVGIDN 134 (600)
Q Consensus 58 ~~~ilv~~~l~~~~~~~l~~~~~v~~~~---~~~~~el~~~i~~~d~li~~~~~~~~~~~l~~~~~~Lk~I~~~g~G~d~ 134 (600)
+|||++++++.++..+.|++..++.... ..+.+++.+.+.++|++++++ .++++++++++ |+||+|++.|+|+||
T Consensus 2 ~~~vl~~~~~~~~~~~~l~~~~~v~~~~~~~~~~~~~~~~~~~~ad~li~~~-~~~~~~~l~~~-p~Lk~I~~~g~G~d~ 79 (323)
T PRK15409 2 KPSVILYKALPDDLLQRLEEHFTVTQVANLSPETVEQHAAAFAEAEGLLGSG-EKVDAALLEKM-PKLRAASTISVGYDN 79 (323)
T ss_pred CceEEEeCCCCHHHHHHHHhcCcEEEcCCCCCCCHHHHHHHhcCCeEEEEcC-CCCCHHHHhhC-CCCeEEEECceeccc
Confidence 6899999999999889888766665432 235678888999999999864 58999999987 699999999999999
Q ss_pred cChhHHHhCCceeecCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCccccc---cccceeccCCEEEEEecChhHHH
Q 007512 135 VDLAAATEFGCLVVNAPTANTVAAAEHGIALLAAMARNVAQADASVKAGKWQRN---KYVGVSLVGKTLAVLGFGKVGSE 211 (600)
Q Consensus 135 iD~~aa~~~GI~V~n~p~~~~~~vAE~~l~lll~~~R~i~~~~~~~~~g~W~~~---~~~g~~l~gktiGIIGlG~IG~~ 211 (600)
||+++|+++||.|+|+|++|+.+||||++++||+++|+++++++.+++|+|.+. .+.|.+|+|||+||||+|.||+.
T Consensus 80 id~~~~~~~gI~V~n~~~~~~~~VAE~~~~l~L~~~R~i~~~~~~~~~g~w~~~~~~~~~g~~L~gktvGIiG~G~IG~~ 159 (323)
T PRK15409 80 FDVDALTARKILLMHTPTVLTETVADTLMALVLSTARRVVEVAERVKAGEWTASIGPDWFGTDVHHKTLGIVGMGRIGMA 159 (323)
T ss_pred ccHHHHHHCCCEEEeCCCCCchHHHHHHHHHHHHHHcCHHHHHHHHHcCCCcccCccccccCCCCCCEEEEEcccHHHHH
Confidence 999999999999999999999999999999999999999999999999999743 23588999999999999999999
Q ss_pred HHHHhh-cCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEecCCCccccccccHhHhccCCCceEEEEccCCc
Q 007512 212 VARRAK-GLGMHVIAHDPYAPADRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGG 290 (600)
Q Consensus 212 vA~~l~-~~g~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Pl~~~t~~li~~~~l~~mk~gailvNvarg~ 290 (600)
+|++++ +|||+|++||++.+.+.....++.++++++++++||+|++|+|+|++|+++|+++.|++||||++|||+|||+
T Consensus 160 va~~l~~~fgm~V~~~~~~~~~~~~~~~~~~~~~l~ell~~sDvv~lh~plt~~T~~li~~~~l~~mk~ga~lIN~aRG~ 239 (323)
T PRK15409 160 LAQRAHFGFNMPILYNARRHHKEAEERFNARYCDLDTLLQESDFVCIILPLTDETHHLFGAEQFAKMKSSAIFINAGRGP 239 (323)
T ss_pred HHHHHHhcCCCEEEEECCCCchhhHHhcCcEecCHHHHHHhCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEEECCCcc
Confidence 999998 9999999999986554445667788899999999999999999999999999999999999999999999999
Q ss_pred cccHHHHHHhHhcCCceEEEEeccCCCCCCCCCccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCcccc
Q 007512 291 VIDEEALVRALDSGRVAQAALDVFTEEPPPADSKLVQHERVTVTPHLGASTMEAQEGVAIEIAEAVVGALKGELAATAVN 370 (600)
Q Consensus 291 ivde~aL~~aL~~g~i~ga~lDv~~~EP~~~~~~L~~~~nvilTPH~~~~t~ea~~~~~~~~~~~l~~~l~g~~~~~~vn 370 (600)
+||++||++||++|+|+||+||||+.||++.++|||++||+++|||+|+.|.|++.++...+++|+.+|++|+++.+.||
T Consensus 240 vVde~AL~~AL~~g~i~gAaLDVf~~EP~~~~~pL~~~~nvilTPHia~~t~e~~~~~~~~~~~ni~~~~~g~~~~~~vn 319 (323)
T PRK15409 240 VVDENALIAALQKGEIHAAGLDVFEQEPLSVDSPLLSLPNVVAVPHIGSATHETRYNMAACAVDNLIDALQGKVEKNCVN 319 (323)
T ss_pred ccCHHHHHHHHHcCCeeEEEeecCCCCCCCCCchhhcCCCEEEcCcCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCcccC
Confidence 99999999999999999999999999999889999999999999999999999999999999999999999999999888
Q ss_pred C
Q 007512 371 A 371 (600)
Q Consensus 371 ~ 371 (600)
+
T Consensus 320 ~ 320 (323)
T PRK15409 320 P 320 (323)
T ss_pred c
Confidence 5
|
|
| >COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-66 Score=539.30 Aligned_cols=314 Identities=38% Similarity=0.599 Sum_probs=289.9
Q ss_pred CCCeEEEecCCCHhHHHHhcccCcEEEccCC-C-HhHHhhhcCCceEEEEcCCCCCCHHHHhccCCCceEEEEcCcccCc
Q 007512 57 SKPTVLIAEKLGQAGLDLLNEFANVDCAYNL-S-PEELCTKISLCDALIVRSGTKVNRDVFESSAGRLKVVGRAGVGIDN 134 (600)
Q Consensus 57 ~~~~ilv~~~l~~~~~~~l~~~~~v~~~~~~-~-~~el~~~i~~~d~li~~~~~~~~~~~l~~~~~~Lk~I~~~g~G~d~ 134 (600)
.|++++.+.++.++..+.|.+.+++...... + ..++.+..+++|++++...+++++++++++ |+||+|+..|+||||
T Consensus 1 mk~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~i~~~~l~~~-p~LKlIa~~~~G~D~ 79 (324)
T COG1052 1 MKIVVLSTRKLPPEVLERLKEKFEVERYEDDLTPDTELAERLKDADAVITFVNDRIDAEVLEKL-PGLKLIATRSAGYDN 79 (324)
T ss_pred CCcEEEecCcCCHHHHHHhhccEEEEEeccCCccchHHHHHhcCCcEEEEcCCCCcCHHHHHhC-CCcEEEEEeccccCc
Confidence 3678999999999988888877666553322 1 126788899999999987788999999998 799999999999999
Q ss_pred cChhHHHhCCceeecCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCcccccc----ccceeccCCEEEEEecChhHH
Q 007512 135 VDLAAATEFGCLVVNAPTANTVAAAEHGIALLAAMARNVAQADASVKAGKWQRNK----YVGVSLVGKTLAVLGFGKVGS 210 (600)
Q Consensus 135 iD~~aa~~~GI~V~n~p~~~~~~vAE~~l~lll~~~R~i~~~~~~~~~g~W~~~~----~~g~~l~gktiGIIGlG~IG~ 210 (600)
||+++|+++||.|+|+|++++++||||+++|||++.|++.++++.+|+|+|.... ..|.+++|||+||||+|+||+
T Consensus 80 vDl~aa~~~gI~Vtnvp~~~t~sVAe~~~aLiLa~~R~~~~~~~~~r~g~w~~~~~~~~~~~~~l~gktvGIiG~GrIG~ 159 (324)
T COG1052 80 VDLEAAKERGITVTNVPGYSTEAVAEHAVALILALARRIHEGDRRVREGNWSLSGGPDPLLGFDLRGKTLGIIGLGRIGQ 159 (324)
T ss_pred ccHHHHHHCCcEEEeCCCCCchHHHHHHHHHHHHHhhchHHHHHHHhcCcccccCCcccccccCCCCCEEEEECCCHHHH
Confidence 9999999999999999999999999999999999999999999999999998864 568899999999999999999
Q ss_pred HHHHHhhcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEecCCCccccccccHhHhccCCCceEEEEccCCc
Q 007512 211 EVARRAKGLGMHVIAHDPYAPADRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGG 290 (600)
Q Consensus 211 ~vA~~l~~~g~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Pl~~~t~~li~~~~l~~mk~gailvNvarg~ 290 (600)
.+|+++++|||+|++||++..++.....++.++++++++++||+|++|||++++|+|+||++.|++||+|++|||+|||+
T Consensus 160 avA~r~~~Fgm~v~y~~~~~~~~~~~~~~~~y~~l~ell~~sDii~l~~Plt~~T~hLin~~~l~~mk~ga~lVNtaRG~ 239 (324)
T COG1052 160 AVARRLKGFGMKVLYYDRSPNPEAEKELGARYVDLDELLAESDIISLHCPLTPETRHLINAEELAKMKPGAILVNTARGG 239 (324)
T ss_pred HHHHHHhcCCCEEEEECCCCChHHHhhcCceeccHHHHHHhCCEEEEeCCCChHHhhhcCHHHHHhCCCCeEEEECCCcc
Confidence 99999999999999999998755556666888899999999999999999999999999999999999999999999999
Q ss_pred cccHHHHHHhHhcCCceEEEEeccCCCCCCCCCccccCCc---EEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCc
Q 007512 291 VIDEEALVRALDSGRVAQAALDVFTEEPPPADSKLVQHER---VTVTPHLGASTMEAQEGVAIEIAEAVVGALKGELAAT 367 (600)
Q Consensus 291 ivde~aL~~aL~~g~i~ga~lDv~~~EP~~~~~~L~~~~n---vilTPH~~~~t~ea~~~~~~~~~~~l~~~l~g~~~~~ 367 (600)
+||++||++||++|+|+|||+|||+.||.+.++||+..+| +++|||+|+.|.|++.+++..+++|+.+|++|+.+.+
T Consensus 240 ~VDe~ALi~AL~~g~i~gaglDV~e~Ep~~~d~~l~~l~~~~~vvltPHia~at~ea~~~m~~~~~~nl~~~~~g~~~~~ 319 (324)
T COG1052 240 LVDEQALIDALKSGKIAGAGLDVFENEPALFDHPLLRLDNFPNVVLTPHIASATEEARKAMAELALENLEAFFDGGVPPN 319 (324)
T ss_pred ccCHHHHHHHHHhCCcceEEeeecCCCCCCCChhHhhccCCCCEEEccccccccHHHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 9999999999999999999999999999877899998777 9999999999999999999999999999999999988
Q ss_pred cccC
Q 007512 368 AVNA 371 (600)
Q Consensus 368 ~vn~ 371 (600)
.||+
T Consensus 320 ~v~~ 323 (324)
T COG1052 320 EVNP 323 (324)
T ss_pred CCCC
Confidence 8874
|
|
| >PRK08410 2-hydroxyacid dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-65 Score=535.48 Aligned_cols=298 Identities=28% Similarity=0.469 Sum_probs=271.6
Q ss_pred eEEEecC--CCHhHHHHhcccCcEEEccCCCHhHHhhhcCCceEEEEcCCCCCCHHHHhccCCCceEEEEcCcccCccCh
Q 007512 60 TVLIAEK--LGQAGLDLLNEFANVDCAYNLSPEELCTKISLCDALIVRSGTKVNRDVFESSAGRLKVVGRAGVGIDNVDL 137 (600)
Q Consensus 60 ~ilv~~~--l~~~~~~~l~~~~~v~~~~~~~~~el~~~i~~~d~li~~~~~~~~~~~l~~~~~~Lk~I~~~g~G~d~iD~ 137 (600)
||++++. +.+..++.|++.+++......+++++.+.+.++|+++++ .+++++++++++ |+||+|+++|+|+||||+
T Consensus 2 ki~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~-~~~~~~~~l~~~-~~Lk~I~~~~~G~d~id~ 79 (311)
T PRK08410 2 KIVILDAKTLGDKDLSVFEEFGDFQIYPTTSPEEVIERIKDANIIITN-KVVIDKEVLSQL-PNLKLICITATGTNNVDI 79 (311)
T ss_pred eEEEEecCCCChhhHHHHhhCceEEEeCCCCHHHHHHHhCCCCEEEEC-CCCCCHHHHhhC-CCCeEEEEcccccccccH
Confidence 5777776 677778888876666544344578888999999999876 568999999997 699999999999999999
Q ss_pred hHHHhCCceeecCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCccccccc------cceeccCCEEEEEecChhHHH
Q 007512 138 AAATEFGCLVVNAPTANTVAAAEHGIALLAAMARNVAQADASVKAGKWQRNKY------VGVSLVGKTLAVLGFGKVGSE 211 (600)
Q Consensus 138 ~aa~~~GI~V~n~p~~~~~~vAE~~l~lll~~~R~i~~~~~~~~~g~W~~~~~------~g~~l~gktiGIIGlG~IG~~ 211 (600)
++|+++||.|+|+||+|+.+||||++++||+++|+++.+++.+++|+|.+... .+.+|+|||+||||+|.||+.
T Consensus 80 ~~~~~~gI~v~n~~g~~~~~VAE~a~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~~L~gktvGIiG~G~IG~~ 159 (311)
T PRK08410 80 EYAKKKGIAVKNVAGYSTESVAQHTFAMLLSLLGRINYYDRYVKSGEYSESPIFTHISRPLGEIKGKKWGIIGLGTIGKR 159 (311)
T ss_pred HHHHhCCCEEEcCCCCCChHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCcCCCccccCccccccCCCEEEEECCCHHHHH
Confidence 99999999999999999999999999999999999999999999999985421 257999999999999999999
Q ss_pred HHHHhhcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEecCCCccccccccHhHhccCCCceEEEEccCCcc
Q 007512 212 VARRAKGLGMHVIAHDPYAPADRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGV 291 (600)
Q Consensus 212 vA~~l~~~g~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Pl~~~t~~li~~~~l~~mk~gailvNvarg~i 291 (600)
+|+++++|||+|++|||+... ...++..+++++++++||+|++|+|+|++|+++||++.|++||||++|||+|||++
T Consensus 160 vA~~~~~fgm~V~~~d~~~~~---~~~~~~~~~l~ell~~sDvv~lh~Plt~~T~~li~~~~~~~Mk~~a~lIN~aRG~v 236 (311)
T PRK08410 160 VAKIAQAFGAKVVYYSTSGKN---KNEEYERVSLEELLKTSDIISIHAPLNEKTKNLIAYKELKLLKDGAILINVGRGGI 236 (311)
T ss_pred HHHHHhhcCCEEEEECCCccc---cccCceeecHHHHhhcCCEEEEeCCCCchhhcccCHHHHHhCCCCeEEEECCCccc
Confidence 999999999999999997532 12456678999999999999999999999999999999999999999999999999
Q ss_pred ccHHHHHHhHhcCCceEEEEeccCCCCCCCCCccccC---CcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCC
Q 007512 292 IDEEALVRALDSGRVAQAALDVFTEEPPPADSKLVQH---ERVTVTPHLGASTMEAQEGVAIEIAEAVVGALKGE 363 (600)
Q Consensus 292 vde~aL~~aL~~g~i~ga~lDv~~~EP~~~~~~L~~~---~nvilTPH~~~~t~ea~~~~~~~~~~~l~~~l~g~ 363 (600)
||++||++||++|+|+ |++|||++||++.++|||.+ |||++|||+|++|.|+++++...+++|+.+|++|+
T Consensus 237 VDe~AL~~AL~~g~i~-AaLDV~~~EP~~~~~pL~~~~~~~NvilTPH~a~~t~e~~~~~~~~~~~nl~~~~~g~ 310 (311)
T PRK08410 237 VNEKDLAKALDEKDIY-AGLDVLEKEPMEKNHPLLSIKNKEKLLITPHIAWASKEARKTLIEKVKENIKDFLEGG 310 (311)
T ss_pred cCHHHHHHHHHcCCeE-EEEecCCCCCCCCCChhhccCCCCCEEECCccccCCHHHHHHHHHHHHHHHHHHHcCC
Confidence 9999999999999999 99999999999999999986 89999999999999999999999999999999885
|
|
| >PRK13243 glyoxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-65 Score=536.42 Aligned_cols=313 Identities=37% Similarity=0.638 Sum_probs=287.5
Q ss_pred CCeEEEecCCCHhHHHHhcccCcEEEcc---CCCHhHHhhhcCCceEEEEcCCCCCCHHHHhccCCCceEEEEcCcccCc
Q 007512 58 KPTVLIAEKLGQAGLDLLNEFANVDCAY---NLSPEELCTKISLCDALIVRSGTKVNRDVFESSAGRLKVVGRAGVGIDN 134 (600)
Q Consensus 58 ~~~ilv~~~l~~~~~~~l~~~~~v~~~~---~~~~~el~~~i~~~d~li~~~~~~~~~~~l~~~~~~Lk~I~~~g~G~d~ 134 (600)
||||++++.+.+...+.|++..++.... ..+.+++.+.++++|++++++.+++++++++++ |+||||+++|+|+||
T Consensus 2 ~~kil~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~-p~Lk~I~~~~~G~d~ 80 (333)
T PRK13243 2 KPKVFITREIPENGIEMLEEHFEVEVWEDEREIPREVLLEKVRDVDALVTMLSERIDCEVFEAA-PRLRIVANYAVGYDN 80 (333)
T ss_pred CceEEEECCCCHHHHHHHhcCceEEEecCCCCCCHHHHHHHhCCCcEEEEeCCCCCCHHHHhhC-CCCeEEEecCccccc
Confidence 6899999999888888887765554332 246788889999999999987678999999987 699999999999999
Q ss_pred cChhHHHhCCceeecCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCcccccc-------ccceeccCCEEEEEecCh
Q 007512 135 VDLAAATEFGCLVVNAPTANTVAAAEHGIALLAAMARNVAQADASVKAGKWQRNK-------YVGVSLVGKTLAVLGFGK 207 (600)
Q Consensus 135 iD~~aa~~~GI~V~n~p~~~~~~vAE~~l~lll~~~R~i~~~~~~~~~g~W~~~~-------~~g~~l~gktiGIIGlG~ 207 (600)
||+++|+++||.|+|+||+|+.+||||++++||+++|+++.+++.+++|.|.+.. +.|.+|+||||||||+|.
T Consensus 81 id~~~~~~~gI~v~n~~g~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~~~g~~L~gktvgIiG~G~ 160 (333)
T PRK13243 81 IDVEEATRRGIYVTNTPGVLTEATADFAWALLLATARRLVEADHFVRSGEWKRRGVAWHPLMFLGYDVYGKTIGIIGFGR 160 (333)
T ss_pred cCHHHHHHcCCEEEECCCCChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCccccccccccccccCCCCCEEEEECcCH
Confidence 9999999999999999999999999999999999999999999999999997521 257899999999999999
Q ss_pred hHHHHHHHhhcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEecCCCccccccccHhHhccCCCceEEEEcc
Q 007512 208 VGSEVARRAKGLGMHVIAHDPYAPADRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVA 287 (600)
Q Consensus 208 IG~~vA~~l~~~g~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Pl~~~t~~li~~~~l~~mk~gailvNva 287 (600)
||+.+|++|++|||+|++||++.........++...++++++++||+|++|+|++++|+++++++.|++||+|++|||+|
T Consensus 161 IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lP~t~~T~~~i~~~~~~~mk~ga~lIN~a 240 (333)
T PRK13243 161 IGQAVARRAKGFGMRILYYSRTRKPEAEKELGAEYRPLEELLRESDFVSLHVPLTKETYHMINEERLKLMKPTAILVNTA 240 (333)
T ss_pred HHHHHHHHHHHCCCEEEEECCCCChhhHHHcCCEecCHHHHHhhCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEEECc
Confidence 99999999999999999999987544445567777799999999999999999999999999999999999999999999
Q ss_pred CCccccHHHHHHhHhcCCceEEEEeccCCCCCCCCCccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCc
Q 007512 288 RGGVIDEEALVRALDSGRVAQAALDVFTEEPPPADSKLVQHERVTVTPHLGASTMEAQEGVAIEIAEAVVGALKGELAAT 367 (600)
Q Consensus 288 rg~ivde~aL~~aL~~g~i~ga~lDv~~~EP~~~~~~L~~~~nvilTPH~~~~t~ea~~~~~~~~~~~l~~~l~g~~~~~ 367 (600)
||+++|+++|+++|++|+|+||+||||+.||++ ++|||++|||++|||+|++|.|++.++...+++|+.+|++|+.+.+
T Consensus 241 Rg~~vd~~aL~~aL~~g~i~gAaLDV~~~EP~~-~~pL~~~~nvilTPHia~~t~e~~~~~~~~~~~ni~~~~~g~~~~~ 319 (333)
T PRK13243 241 RGKVVDTKALVKALKEGWIAGAGLDVFEEEPYY-NEELFSLKNVVLAPHIGSATFEAREGMAELVAENLIAFKRGEVPPT 319 (333)
T ss_pred CchhcCHHHHHHHHHcCCeEEEEeccCCCCCCC-CchhhcCCCEEECCcCCcCHHHHHHHHHHHHHHHHHHHHcCCCCCc
Confidence 999999999999999999999999999999987 8999999999999999999999999999999999999999998888
Q ss_pred cccCC
Q 007512 368 AVNAP 372 (600)
Q Consensus 368 ~vn~~ 372 (600)
.||+.
T Consensus 320 ~v~~~ 324 (333)
T PRK13243 320 LVNRE 324 (333)
T ss_pred ccCHH
Confidence 88743
|
|
| >PRK06487 glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-64 Score=526.00 Aligned_cols=302 Identities=32% Similarity=0.482 Sum_probs=268.9
Q ss_pred eEEEecCC----CHhHHHHhccc-CcEEEccCCCHhHHhhhcCCceEEEEcCCCCCCHHHHhccCCCceEEEEcCcccCc
Q 007512 60 TVLIAEKL----GQAGLDLLNEF-ANVDCAYNLSPEELCTKISLCDALIVRSGTKVNRDVFESSAGRLKVVGRAGVGIDN 134 (600)
Q Consensus 60 ~ilv~~~l----~~~~~~~l~~~-~~v~~~~~~~~~el~~~i~~~d~li~~~~~~~~~~~l~~~~~~Lk~I~~~g~G~d~ 134 (600)
||++++.. .+...+.|++. .++.+....+.+++.+.+.++|+++++ .+++++++++++ |+||+|+++|+|+||
T Consensus 2 ~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~-~~~~~~~~l~~~-~~Lk~I~~~~~G~d~ 79 (317)
T PRK06487 2 RAVFLDHDSLDLGDLDLSPLEQAFDELQLHDATTPEQVAERLRGAQVAISN-KVALDAAALAAA-PQLKLILVAATGTNN 79 (317)
T ss_pred eEEEEccccCCccccchhHHHhhCCeEEEecCCCHHHHHHHhCCCeEEEEe-CCCCCHHHHhhC-CCCeEEEEcCccccc
Confidence 57776552 23445566543 455554455678899999999998875 468999999987 699999999999999
Q ss_pred cChhHHHhCCceeecCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCcccccc------ccceeccCCEEEEEecChh
Q 007512 135 VDLAAATEFGCLVVNAPTANTVAAAEHGIALLAAMARNVAQADASVKAGKWQRNK------YVGVSLVGKTLAVLGFGKV 208 (600)
Q Consensus 135 iD~~aa~~~GI~V~n~p~~~~~~vAE~~l~lll~~~R~i~~~~~~~~~g~W~~~~------~~g~~l~gktiGIIGlG~I 208 (600)
||+++|+++||.|+|+||+++.+||||++++||+++|+++++++.+++|+|.+.. +.+.+|+|||+||||+|.|
T Consensus 80 id~~~~~~~gI~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~~~~~l~gktvgIiG~G~I 159 (317)
T PRK06487 80 VDLAAARERGITVCNCQGYGTPSVAQHTLALLLALATRLPDYQQAVAAGRWQQSSQFCLLDFPIVELEGKTLGLLGHGEL 159 (317)
T ss_pred cCHHHHHHCCCEEEeCCCCCcchHHHHHHHHHHHHHcCHHHHHHHHHcCCCccCcccccccCcccccCCCEEEEECCCHH
Confidence 9999999999999999999999999999999999999999999999999998642 2357999999999999999
Q ss_pred HHHHHHHhhcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEecCCCccccccccHhHhccCCCceEEEEccC
Q 007512 209 GSEVARRAKGLGMHVIAHDPYAPADRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVAR 288 (600)
Q Consensus 209 G~~vA~~l~~~g~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Pl~~~t~~li~~~~l~~mk~gailvNvar 288 (600)
|+.+|+++++|||+|++||++.... ....++|++++++||+|++|+|+|++|+++||++.|++||+|++|||+||
T Consensus 160 G~~vA~~l~~fgm~V~~~~~~~~~~-----~~~~~~l~ell~~sDiv~l~lPlt~~T~~li~~~~~~~mk~ga~lIN~aR 234 (317)
T PRK06487 160 GGAVARLAEAFGMRVLIGQLPGRPA-----RPDRLPLDELLPQVDALTLHCPLTEHTRHLIGARELALMKPGALLINTAR 234 (317)
T ss_pred HHHHHHHHhhCCCEEEEECCCCCcc-----cccccCHHHHHHhCCEEEECCCCChHHhcCcCHHHHhcCCCCeEEEECCC
Confidence 9999999999999999999864321 23456899999999999999999999999999999999999999999999
Q ss_pred CccccHHHHHHhHhcCCceEEEEeccCCCCCCCCCcccc--CCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCC
Q 007512 289 GGVIDEEALVRALDSGRVAQAALDVFTEEPPPADSKLVQ--HERVTVTPHLGASTMEAQEGVAIEIAEAVVGALKGELAA 366 (600)
Q Consensus 289 g~ivde~aL~~aL~~g~i~ga~lDv~~~EP~~~~~~L~~--~~nvilTPH~~~~t~ea~~~~~~~~~~~l~~~l~g~~~~ 366 (600)
|++||++||++||++|+|+||+||||+.||++.++|||. +||+++|||+|++|.|+++++...+++|+.+|++|++.
T Consensus 235 G~vVde~AL~~AL~~g~i~gAaLDVf~~EP~~~~~pl~~~~~pnvilTPHia~~t~e~~~~~~~~~~~ni~~~~~g~~~- 313 (317)
T PRK06487 235 GGLVDEQALADALRSGHLGGAATDVLSVEPPVNGNPLLAPDIPRLIVTPHSAWGSREARQRIVGQLAENARAFFAGKPL- 313 (317)
T ss_pred ccccCHHHHHHHHHcCCeeEEEeecCCCCCCCCCCchhhcCCCCEEECCccccCCHHHHHHHHHHHHHHHHHHHcCCCC-
Confidence 999999999999999999999999999999988999995 89999999999999999999999999999999999753
Q ss_pred ccc
Q 007512 367 TAV 369 (600)
Q Consensus 367 ~~v 369 (600)
+.|
T Consensus 314 ~~v 316 (317)
T PRK06487 314 RVV 316 (317)
T ss_pred cCC
Confidence 444
|
|
| >PLN02306 hydroxypyruvate reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-63 Score=527.39 Aligned_cols=338 Identities=31% Similarity=0.425 Sum_probs=289.9
Q ss_pred CCCCCeEEEecCCCHh-HHHHhccc-CcEEEcc----CCCHhHHhhhc-CCceEEEEcCCCCCCHHHHhccCC-CceEEE
Q 007512 55 ISSKPTVLIAEKLGQA-GLDLLNEF-ANVDCAY----NLSPEELCTKI-SLCDALIVRSGTKVNRDVFESSAG-RLKVVG 126 (600)
Q Consensus 55 ~~~~~~ilv~~~l~~~-~~~~l~~~-~~v~~~~----~~~~~el~~~i-~~~d~li~~~~~~~~~~~l~~~~~-~Lk~I~ 126 (600)
+..|++|++++.+.++ .++.|++. .++.... .++.+++.+.+ .++|+++++..++++++++++++. +||+|+
T Consensus 12 ~~~~~~v~~~~~~~~~~~~~~L~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~i~~~~l~~~~~l~lk~I~ 91 (386)
T PLN02306 12 PNGKYRVVSTKPMPGTRWINLLVDQDCRVEICTEKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFSALSKAGGKAFS 91 (386)
T ss_pred CCCCceEEEeCCCCcHHHHHHHHhcCceEEecCCcCCCCCHHHHHHHhhcCCcEEEEcCCCCcCHHHHHhCCcCCceEEE
Confidence 5679999999999774 67888765 4665422 25788898887 579999998777899999999842 479999
Q ss_pred EcCcccCccChhHHHhCCceeecCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCcccccc---ccceeccCCEEEEE
Q 007512 127 RAGVGIDNVDLAAATEFGCLVVNAPTANTVAAAEHGIALLAAMARNVAQADASVKAGKWQRNK---YVGVSLVGKTLAVL 203 (600)
Q Consensus 127 ~~g~G~d~iD~~aa~~~GI~V~n~p~~~~~~vAE~~l~lll~~~R~i~~~~~~~~~g~W~~~~---~~g~~l~gktiGII 203 (600)
+.|+|+||||+++|+++||.|+|+||+++.+||||++++||+++|+++++++.+++|.|.++. ..|.+|.|||+|||
T Consensus 92 ~~~~G~D~iD~~aa~~~gI~V~n~pg~~~~~VAE~al~liLal~R~i~~~~~~~~~g~w~~~~~~~~~g~~L~gktvGIi 171 (386)
T PLN02306 92 NMAVGYNNVDVEAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYEGWLPHLFVGNLLKGQTVGVI 171 (386)
T ss_pred ECCcccccccHHHHHHCCCEEEECCCcCHHHHHHHHHHHHHHHHhChHHHHHHHHcCCCccccccccCCcCCCCCEEEEE
Confidence 999999999999999999999999999999999999999999999999999999999986432 35789999999999
Q ss_pred ecChhHHHHHHHhh-cCCCEEEEECCCCChhHH---HHcC------------Cc-ccCHHHHhccCCEEEEecCCCcccc
Q 007512 204 GFGKVGSEVARRAK-GLGMHVIAHDPYAPADRA---RAIG------------VD-LVSFDEAIATADFISLHMPLTPATS 266 (600)
Q Consensus 204 GlG~IG~~vA~~l~-~~g~~V~~~d~~~~~~~a---~~~g------------~~-~~~l~ell~~aDvV~l~~Pl~~~t~ 266 (600)
|+|.||+.+|++++ +|||+|++|||+...+.. ...| +. ..+|++++++||+|++|+|+|++|+
T Consensus 172 G~G~IG~~vA~~l~~~fGm~V~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~ell~~sDiV~lh~Plt~~T~ 251 (386)
T PLN02306 172 GAGRIGSAYARMMVEGFKMNLIYYDLYQSTRLEKFVTAYGQFLKANGEQPVTWKRASSMEEVLREADVISLHPVLDKTTY 251 (386)
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEECCCCchhhhhhhhhhcccccccccccccccccCCHHHHHhhCCEEEEeCCCChhhh
Confidence 99999999999985 999999999998643211 1121 12 2489999999999999999999999
Q ss_pred ccccHhHhccCCCceEEEEccCCccccHHHHHHhHhcCCceEEEEeccCCCCCCCCCccccCCcEEEcCCCCCCcHHHHH
Q 007512 267 KVLNDETFGKMKKGVRIINVARGGVIDEEALVRALDSGRVAQAALDVFTEEPPPADSKLVQHERVTVTPHLGASTMEAQE 346 (600)
Q Consensus 267 ~li~~~~l~~mk~gailvNvarg~ivde~aL~~aL~~g~i~ga~lDv~~~EP~~~~~~L~~~~nvilTPH~~~~t~ea~~ 346 (600)
+||+++.|++||+|++|||+|||++||++||++||++|+|+||+||||++||++ ++|||++|||++|||+|++|.++++
T Consensus 252 ~lin~~~l~~MK~ga~lIN~aRG~lVDe~AL~~AL~sg~i~gAaLDVf~~EP~~-~~~L~~~pNVilTPHiag~T~e~~~ 330 (386)
T PLN02306 252 HLINKERLALMKKEAVLVNASRGPVIDEVALVEHLKANPMFRVGLDVFEDEPYM-KPGLADMKNAVVVPHIASASKWTRE 330 (386)
T ss_pred hhcCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHhCCeeEEEEeCCCCCCCC-cchHhhCCCEEECCccccCcHHHHH
Confidence 999999999999999999999999999999999999999999999999999974 5789999999999999999999999
Q ss_pred HHHHHHHHHHHHHHcCCCCCcccc--CCCCChh-hhhcccchHHHHHHHH
Q 007512 347 GVAIEIAEAVVGALKGELAATAVN--APMVPAE-VLTELKPFVELAEKLG 393 (600)
Q Consensus 347 ~~~~~~~~~l~~~l~g~~~~~~vn--~~~i~~~-~~~~~~p~~~la~~lG 393 (600)
++...+++|+.+|++|+.+.+.|| .+.+... --+..+|-+..+..+|
T Consensus 331 ~~~~~~~~ni~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (386)
T PLN02306 331 GMATLAALNVLGKLKGYPVWGDPNRVEPFLNENAPPPAASPSIVNAKALG 380 (386)
T ss_pred HHHHHHHHHHHHHHcCCCCcccccchhhcccccCCCCcCCcceechhhhC
Confidence 999999999999999999999999 3333321 1122345555444443
|
|
| >PRK06932 glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-62 Score=514.17 Aligned_cols=272 Identities=30% Similarity=0.473 Sum_probs=251.4
Q ss_pred CCCHhHHhhhcCCceEEEEcCCCCCCHHHHhccCCCceEEEEcCcccCccChhHHHhCCceeecCCCCChHHHHHHHHHH
Q 007512 86 NLSPEELCTKISLCDALIVRSGTKVNRDVFESSAGRLKVVGRAGVGIDNVDLAAATEFGCLVVNAPTANTVAAAEHGIAL 165 (600)
Q Consensus 86 ~~~~~el~~~i~~~d~li~~~~~~~~~~~l~~~~~~Lk~I~~~g~G~d~iD~~aa~~~GI~V~n~p~~~~~~vAE~~l~l 165 (600)
..+++|+.+.++++|++++. .+++++++++++ |+||+|++.|+|+||||+++|+++||.|+|+||+++.+||||++++
T Consensus 32 ~~~~~~~~~~~~~~d~ii~~-~~~~~~~~l~~~-~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~g~~~~~vAE~~i~l 109 (314)
T PRK06932 32 HTSAEQTIERAKDADIVITS-KVLFTRETLAQL-PKLKLIAITATGTNNVDLVAAKELGIAVKNVTGYSSTTVPEHVLGM 109 (314)
T ss_pred CCChHHHHHHhCCCcEEEEe-CCCCCHHHHhhC-cCCeEEEEecccccccCHHHHHhCCCEEEeCCCCChhHHHHHHHHH
Confidence 45678899999999988774 568999999987 6999999999999999999999999999999999999999999999
Q ss_pred HHHHHhchHHHHHHHHcCcccccc------ccceeccCCEEEEEecChhHHHHHHHhhcCCCEEEEECCCCChhHHHHcC
Q 007512 166 LAAMARNVAQADASVKAGKWQRNK------YVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPADRARAIG 239 (600)
Q Consensus 166 ll~~~R~i~~~~~~~~~g~W~~~~------~~g~~l~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~~~~a~~~g 239 (600)
||+++|+++.+++.+++|+|.+.. +.+.+|+|||+||||+|.||+.+|+++++|||+|++||++.... ..
T Consensus 110 ~l~~~R~~~~~~~~~~~~~W~~~~~~~~~~~~~~~l~gktvgIiG~G~IG~~va~~l~~fg~~V~~~~~~~~~~----~~ 185 (314)
T PRK06932 110 IFALKHSLMGWYRDQLSDRWATCKQFCYFDYPITDVRGSTLGVFGKGCLGTEVGRLAQALGMKVLYAEHKGASV----CR 185 (314)
T ss_pred HHHHHhChHHHHHHHHcCCCCcCccccccCCcccccCCCEEEEECCCHHHHHHHHHHhcCCCEEEEECCCcccc----cc
Confidence 999999999999999999997532 23579999999999999999999999999999999999764211 12
Q ss_pred CcccCHHHHhccCCEEEEecCCCccccccccHhHhccCCCceEEEEccCCccccHHHHHHhHhcCCceEEEEeccCCCCC
Q 007512 240 VDLVSFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVIDEEALVRALDSGRVAQAALDVFTEEPP 319 (600)
Q Consensus 240 ~~~~~l~ell~~aDvV~l~~Pl~~~t~~li~~~~l~~mk~gailvNvarg~ivde~aL~~aL~~g~i~ga~lDv~~~EP~ 319 (600)
..+.+|++++++||+|++|+|+|++|+++||++.|++||||++|||+|||++||++||++||++|+|+||++|||+.||+
T Consensus 186 ~~~~~l~ell~~sDiv~l~~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~~Vde~AL~~aL~~g~i~gAaLDV~~~EP~ 265 (314)
T PRK06932 186 EGYTPFEEVLKQADIVTLHCPLTETTQNLINAETLALMKPTAFLINTGRGPLVDEQALLDALENGKIAGAALDVLVKEPP 265 (314)
T ss_pred cccCCHHHHHHhCCEEEEcCCCChHHhcccCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHcCCccEEEEecCCCCCC
Confidence 23568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccc----cCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCC
Q 007512 320 PADSKLV----QHERVTVTPHLGASTMEAQEGVAIEIAEAVVGALKGE 363 (600)
Q Consensus 320 ~~~~~L~----~~~nvilTPH~~~~t~ea~~~~~~~~~~~l~~~l~g~ 363 (600)
+.++||| ++|||++|||+|++|.|+++++...+++|+.+|++|+
T Consensus 266 ~~~~pl~~~~~~~pnvilTPHia~~t~e~~~~~~~~~~~ni~~~~~~g 313 (314)
T PRK06932 266 EKDNPLIQAAKRLPNLLITPHIAWASDSAVTTLVNKVAQNIEEFVQQG 313 (314)
T ss_pred CCCChhhHhhcCCCCEEECCccccCcHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999998 4899999999999999999999999999999999875
|
|
| >PLN02928 oxidoreductase family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-61 Score=512.74 Aligned_cols=309 Identities=27% Similarity=0.413 Sum_probs=274.4
Q ss_pred CCCCCCeEEEecCCCHhH----HHHhcccCcEEEccCCCHhHHhhhcCCceEEEEcCCCCCCHHHHhccCCCceEEEEcC
Q 007512 54 GISSKPTVLIAEKLGQAG----LDLLNEFANVDCAYNLSPEELCTKISLCDALIVRSGTKVNRDVFESSAGRLKVVGRAG 129 (600)
Q Consensus 54 ~~~~~~~ilv~~~l~~~~----~~~l~~~~~v~~~~~~~~~el~~~i~~~d~li~~~~~~~~~~~l~~~~~~Lk~I~~~g 129 (600)
+.+.|||||++.+..+.. .+.++....+. ....+.+|+.+.+.++|+++++ ..++++++++++ |+||||++.|
T Consensus 14 ~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~~~~d~~i~~-~~~~~~~~l~~~-~~Lk~I~~~~ 90 (347)
T PLN02928 14 SDMRPTRVLFCGPEFPASYSYTREYLQKYPFIQ-VDAVAREDVPDVIANYDICVPK-MMRLDADIIARA-SQMKLIMQFG 90 (347)
T ss_pred CCCCCCEEEEECCCchhHHHHHHHHhhcCCeeE-ecCCCHHHHHHHhcCCcEEEEC-CCCCCHHHHhcC-CCceEEEECC
Confidence 366789999998777653 34444443332 2345678888999999998876 458999999987 6999999999
Q ss_pred cccCccChhHHHhCCceeecCCCC---ChHHHHHHHHHHHHHHHhchHHHHHHHHcCccccccccceeccCCEEEEEecC
Q 007512 130 VGIDNVDLAAATEFGCLVVNAPTA---NTVAAAEHGIALLAAMARNVAQADASVKAGKWQRNKYVGVSLVGKTLAVLGFG 206 (600)
Q Consensus 130 ~G~d~iD~~aa~~~GI~V~n~p~~---~~~~vAE~~l~lll~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktiGIIGlG 206 (600)
+|+||+|+++|.++||.|+|+|++ |+.+||||++++||+++|+++.+++.+++|.|.+ ..+.+|+|||+||||+|
T Consensus 91 ~G~d~id~~~~~~~gi~v~n~~~~~~~~~~~vAE~av~l~L~~~R~~~~~~~~~~~~~w~~--~~~~~l~gktvGIiG~G 168 (347)
T PLN02928 91 VGLEGVDVDAATKHGIKVARIPSEGTGNAASCAEMAIYLMLGLLRKQNEMQISLKARRLGE--PIGDTLFGKTVFILGYG 168 (347)
T ss_pred cccCcCcHHHHHhCCCEEEECCCCCCcChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCccc--ccccCCCCCEEEEECCC
Confidence 999999999999999999999985 8899999999999999999999999999999975 35789999999999999
Q ss_pred hhHHHHHHHhhcCCCEEEEECCCCChhHHHH-------------cCCcccCHHHHhccCCEEEEecCCCccccccccHhH
Q 007512 207 KVGSEVARRAKGLGMHVIAHDPYAPADRARA-------------IGVDLVSFDEAIATADFISLHMPLTPATSKVLNDET 273 (600)
Q Consensus 207 ~IG~~vA~~l~~~g~~V~~~d~~~~~~~a~~-------------~g~~~~~l~ell~~aDvV~l~~Pl~~~t~~li~~~~ 273 (600)
.||+.+|++|++|||+|++||++........ .+....+|++++++||+|++|+|+|++|+++|+++.
T Consensus 169 ~IG~~vA~~l~afG~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ell~~aDiVvl~lPlt~~T~~li~~~~ 248 (347)
T PLN02928 169 AIGIELAKRLRPFGVKLLATRRSWTSEPEDGLLIPNGDVDDLVDEKGGHEDIYEFAGEADIVVLCCTLTKETAGIVNDEF 248 (347)
T ss_pred HHHHHHHHHHhhCCCEEEEECCCCChhhhhhhccccccccccccccCcccCHHHHHhhCCEEEECCCCChHhhcccCHHH
Confidence 9999999999999999999999753322111 112456899999999999999999999999999999
Q ss_pred hccCCCceEEEEccCCccccHHHHHHhHhcCCceEEEEeccCCCCCCCCCccccCCcEEEcCCCCCCcHHHHHHHHHHHH
Q 007512 274 FGKMKKGVRIINVARGGVIDEEALVRALDSGRVAQAALDVFTEEPPPADSKLVQHERVTVTPHLGASTMEAQEGVAIEIA 353 (600)
Q Consensus 274 l~~mk~gailvNvarg~ivde~aL~~aL~~g~i~ga~lDv~~~EP~~~~~~L~~~~nvilTPH~~~~t~ea~~~~~~~~~ 353 (600)
|++||+|++|||+|||++||++||++||++|+|+||+||||+.||+++++|||++||+++|||+|+.|.++++++...++
T Consensus 249 l~~Mk~ga~lINvaRG~lVde~AL~~AL~~g~i~gAaLDV~~~EP~~~~~pL~~~~nviiTPHia~~t~~~~~~~~~~~~ 328 (347)
T PLN02928 249 LSSMKKGALLVNIARGGLLDYDAVLAALESGHLGGLAIDVAWSEPFDPDDPILKHPNVIITPHVAGVTEYSYRSMGKIVG 328 (347)
T ss_pred HhcCCCCeEEEECCCccccCHHHHHHHHHcCCeeEEEEccCCCCCCCCCChhhcCCCEEECCcCCCChHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCCCc
Q 007512 354 EAVVGALKGELAAT 367 (600)
Q Consensus 354 ~~l~~~l~g~~~~~ 367 (600)
+|+.+|++|++..+
T Consensus 329 ~nl~~~~~g~~~~~ 342 (347)
T PLN02928 329 DAALQLHAGRPLTG 342 (347)
T ss_pred HHHHHHHCCCCCCc
Confidence 99999999987654
|
|
| >PLN03139 formate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-61 Score=514.44 Aligned_cols=294 Identities=27% Similarity=0.401 Sum_probs=267.1
Q ss_pred HHHHhcccC-cEEEcc--CCCHhHHhhhcCCceEEEEcC--CCCCCHHHHhccCCCceEEEEcCcccCccChhHHHhCCc
Q 007512 71 GLDLLNEFA-NVDCAY--NLSPEELCTKISLCDALIVRS--GTKVNRDVFESSAGRLKVVGRAGVGIDNVDLAAATEFGC 145 (600)
Q Consensus 71 ~~~~l~~~~-~v~~~~--~~~~~el~~~i~~~d~li~~~--~~~~~~~~l~~~~~~Lk~I~~~g~G~d~iD~~aa~~~GI 145 (600)
..++|++.+ ++.... ..+.+++.+.++++|++|+.. .+++++++++++ |+||||+++|+|+||||+++|+++||
T Consensus 67 ~~~~l~~~g~~~v~~~~~~~~~~~~~~~l~dadili~~~~~~~~~~~e~l~~a-p~LK~I~~~g~G~D~iDl~aa~~~gI 145 (386)
T PLN03139 67 IRDWLESQGHQYIVTDDKEGPDCELEKHIPDLHVLITTPFHPAYVTAERIKKA-KNLELLLTAGIGSDHIDLPAAAAAGL 145 (386)
T ss_pred HHHHHHhcCCeEEEeCCCCCCHHHHHHHhCCCeEEEEcCccCCCCCHHHHhhC-CCccEEEECCccccccCHHHHHHCCe
Confidence 345666653 444433 235678899999999999863 357999999997 69999999999999999999999999
Q ss_pred eeecCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCccccc--cccceeccCCEEEEEecChhHHHHHHHhhcCCCEE
Q 007512 146 LVVNAPTANTVAAAEHGIALLAAMARNVAQADASVKAGKWQRN--KYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHV 223 (600)
Q Consensus 146 ~V~n~p~~~~~~vAE~~l~lll~~~R~i~~~~~~~~~g~W~~~--~~~g~~l~gktiGIIGlG~IG~~vA~~l~~~g~~V 223 (600)
.|+|+||+|+.+||||++++||++.|++.++++.+++|.|... ...+.+|.||||||||+|+||+.+|++|++|||+|
T Consensus 146 ~V~n~~g~na~sVAE~al~liL~l~R~~~~~~~~~~~g~W~~~~~~~~~~~L~gktVGIVG~G~IG~~vA~~L~afG~~V 225 (386)
T PLN03139 146 TVAEVTGSNVVSVAEDELMRILILLRNFLPGYHQVVSGEWNVAGIAYRAYDLEGKTVGTVGAGRIGRLLLQRLKPFNCNL 225 (386)
T ss_pred EEEECCCcCcHHHHHHHHHHHHHHHcCcHHHHHHHHhCCCccccccCCCcCCCCCEEEEEeecHHHHHHHHHHHHCCCEE
Confidence 9999999999999999999999999999999999999999853 23578999999999999999999999999999999
Q ss_pred EEECCCC-ChhHHHHcCCccc-CHHHHhccCCEEEEecCCCccccccccHhHhccCCCceEEEEccCCccccHHHHHHhH
Q 007512 224 IAHDPYA-PADRARAIGVDLV-SFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVIDEEALVRAL 301 (600)
Q Consensus 224 ~~~d~~~-~~~~a~~~g~~~~-~l~ell~~aDvV~l~~Pl~~~t~~li~~~~l~~mk~gailvNvarg~ivde~aL~~aL 301 (600)
++||++. ..+...+.|+... ++++++++||+|++|+|++++|+++++++.|++||+|++|||+|||+++|+++|+++|
T Consensus 226 ~~~d~~~~~~~~~~~~g~~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL 305 (386)
T PLN03139 226 LYHDRLKMDPELEKETGAKFEEDLDAMLPKCDVVVINTPLTEKTRGMFNKERIAKMKKGVLIVNNARGAIMDTQAVADAC 305 (386)
T ss_pred EEECCCCcchhhHhhcCceecCCHHHHHhhCCEEEEeCCCCHHHHHHhCHHHHhhCCCCeEEEECCCCchhhHHHHHHHH
Confidence 9999985 4444556677654 8999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCceEEEEeccCCCCCCCCCccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCC
Q 007512 302 DSGRVAQAALDVFTEEPPPADSKLVQHERVTVTPHLGASTMEAQEGVAIEIAEAVVGALKGELA 365 (600)
Q Consensus 302 ~~g~i~ga~lDv~~~EP~~~~~~L~~~~nvilTPH~~~~t~ea~~~~~~~~~~~l~~~l~g~~~ 365 (600)
++|+|+||++|||++||++.++|||.+||+++|||+||.|.+++++++..+++|+.+|++|+..
T Consensus 306 ~sG~l~GAaLDV~~~EPlp~d~pL~~~pNvilTPHiag~t~~~~~r~~~~~~~nl~~~~~G~~~ 369 (386)
T PLN03139 306 SSGHIGGYGGDVWYPQPAPKDHPWRYMPNHAMTPHISGTTIDAQLRYAAGVKDMLDRYFKGEDF 369 (386)
T ss_pred HcCCceEEEEcCCCCCCCCCCChhhcCCCeEEcccccccCHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999753
|
|
| >PRK07574 formate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-60 Score=509.00 Aligned_cols=295 Identities=28% Similarity=0.474 Sum_probs=268.8
Q ss_pred HHhcccC-cEEEcc--CCCHhHHhhhcCCceEEEEcC--CCCCCHHHHhccCCCceEEEEcCcccCccChhHHHhCCcee
Q 007512 73 DLLNEFA-NVDCAY--NLSPEELCTKISLCDALIVRS--GTKVNRDVFESSAGRLKVVGRAGVGIDNVDLAAATEFGCLV 147 (600)
Q Consensus 73 ~~l~~~~-~v~~~~--~~~~~el~~~i~~~d~li~~~--~~~~~~~~l~~~~~~Lk~I~~~g~G~d~iD~~aa~~~GI~V 147 (600)
+.|++.+ ++.+.. ..+.+++.+.+.++|++|++. ..++++++++++ |+||||+++|+|+||||+++|+++||.|
T Consensus 62 ~~l~~~g~e~~~~~~~~~~~~~~~~~l~dadili~~~~~~~~~~~e~l~~~-p~LK~I~~~g~G~D~id~~aa~~~gI~V 140 (385)
T PRK07574 62 KFLEERGHELVVTSDKDGPDSDFEKELPDADVVISQPFWPAYLTAERIAKA-PNLKLAITAGIGSDHVDLQAASEHGITV 140 (385)
T ss_pred HHHHhcCcEEEEeCCCCCCHHHHHHHcCCCeEEEEecCCCCCCCHHHHhhC-CCCcEEEECCcccccccHHHHHHCCcEE
Confidence 5566653 555432 235688899999999999863 467999999997 6999999999999999999999999999
Q ss_pred ecCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCcccccc--ccceeccCCEEEEEecChhHHHHHHHhhcCCCEEEE
Q 007512 148 VNAPTANTVAAAEHGIALLAAMARNVAQADASVKAGKWQRNK--YVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIA 225 (600)
Q Consensus 148 ~n~p~~~~~~vAE~~l~lll~~~R~i~~~~~~~~~g~W~~~~--~~g~~l~gktiGIIGlG~IG~~vA~~l~~~g~~V~~ 225 (600)
+|+|++|+.+||||++++||+++|++..+++.+++|.|.+.. ..+.+|+||||||||+|.||+.+|++|++|||+|++
T Consensus 141 ~n~~g~~a~~VAE~al~l~L~l~R~~~~~~~~~~~g~W~~~~~~~~~~~L~gktVGIvG~G~IG~~vA~~l~~fG~~V~~ 220 (385)
T PRK07574 141 AEVTGSNSISVAEHVVMMILALVRNYEPSHRQAVEGGWNIADCVSRSYDLEGMTVGIVGAGRIGLAVLRRLKPFDVKLHY 220 (385)
T ss_pred EcCCCCchHHHHHHHHHHHHHHHcCHHHHHHHHHhCCCCcccccccceecCCCEEEEECCCHHHHHHHHHHHhCCCEEEE
Confidence 999999999999999999999999999999999999998643 257899999999999999999999999999999999
Q ss_pred ECCCC-ChhHHHHcCCc-ccCHHHHhccCCEEEEecCCCccccccccHhHhccCCCceEEEEccCCccccHHHHHHhHhc
Q 007512 226 HDPYA-PADRARAIGVD-LVSFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVIDEEALVRALDS 303 (600)
Q Consensus 226 ~d~~~-~~~~a~~~g~~-~~~l~ell~~aDvV~l~~Pl~~~t~~li~~~~l~~mk~gailvNvarg~ivde~aL~~aL~~ 303 (600)
||++. +.+.....|+. ..++++++++||+|++|+|++++|+++++++.|++||+|++|||+|||+++|+++|++||++
T Consensus 221 ~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~s 300 (385)
T PRK07574 221 TDRHRLPEEVEQELGLTYHVSFDSLVSVCDVVTIHCPLHPETEHLFDADVLSRMKRGSYLVNTARGKIVDRDAVVRALES 300 (385)
T ss_pred ECCCCCchhhHhhcCceecCCHHHHhhcCCEEEEcCCCCHHHHHHhCHHHHhcCCCCcEEEECCCCchhhHHHHHHHHHh
Confidence 99986 44444556765 46899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceEEEEeccCCCCCCCCCccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCcc
Q 007512 304 GRVAQAALDVFTEEPPPADSKLVQHERVTVTPHLGASTMEAQEGVAIEIAEAVVGALKGELAATA 368 (600)
Q Consensus 304 g~i~ga~lDv~~~EP~~~~~~L~~~~nvilTPH~~~~t~ea~~~~~~~~~~~l~~~l~g~~~~~~ 368 (600)
|+|+||++|||++||++.++|||.+||+++|||+|++|.|++++++..+++|+.+|++|+++.+.
T Consensus 301 G~i~GAaLDV~~~EPlp~d~pL~~~pNvilTPHiag~T~e~~~~~~~~~~~ni~~~~~G~~~~~~ 365 (385)
T PRK07574 301 GHLAGYAGDVWFPQPAPADHPWRTMPRNGMTPHISGTTLSAQARYAAGTREILECFFEGRPIRDE 365 (385)
T ss_pred CCccEEEEecCCCCCCCCCChHHhCCCeEECCccccCcHHHHHHHHHHHHHHHHHHHcCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999877654
|
|
| >PRK08605 D-lactate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-58 Score=486.08 Aligned_cols=311 Identities=26% Similarity=0.423 Sum_probs=275.5
Q ss_pred CCCeEEEecCCCHhHHHHhcccCcEEE--ccCCCHhHHhhhcCCceEEEEcCCCCCCHHHHhccCCC--ceEEEEcCccc
Q 007512 57 SKPTVLIAEKLGQAGLDLLNEFANVDC--AYNLSPEELCTKISLCDALIVRSGTKVNRDVFESSAGR--LKVVGRAGVGI 132 (600)
Q Consensus 57 ~~~~ilv~~~l~~~~~~~l~~~~~v~~--~~~~~~~el~~~i~~~d~li~~~~~~~~~~~l~~~~~~--Lk~I~~~g~G~ 132 (600)
.|++|+.+++.....++.+.+..++++ ......+|+.+.+.++|++++++.+++++++++++ |+ ||+|+++|+|+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~lk~I~~~~~G~ 80 (332)
T PRK08605 2 TKIKIMSVRDEDAPYIKAWAEKHHVEVDLTKEALTDDNVEEVEGFDGLSLSQQIPLSEAIYKLL-NELGIKQIAQRSAGF 80 (332)
T ss_pred cEEEEEecCHHHHHHHHHHHHhcCeEEEEecCCCCHHHHHHhcCCCEEEEecCCCCCHHHHHhh-hhcCceEEEEccccc
Confidence 567889988888888887765444432 22223455668899999999988889999999998 45 99999999999
Q ss_pred CccChhHHHhCCceeecCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCccccc-cccceeccCCEEEEEecChhHHH
Q 007512 133 DNVDLAAATEFGCLVVNAPTANTVAAAEHGIALLAAMARNVAQADASVKAGKWQRN-KYVGVSLVGKTLAVLGFGKVGSE 211 (600)
Q Consensus 133 d~iD~~aa~~~GI~V~n~p~~~~~~vAE~~l~lll~~~R~i~~~~~~~~~g~W~~~-~~~g~~l~gktiGIIGlG~IG~~ 211 (600)
||||+++|+++||.|+|+|++++.+||||++++||+++|++...++.+++|.|... ...|++|+|++|||||+|.||++
T Consensus 81 d~id~~~~~~~gi~v~n~~~~~~~~vAE~~~~~~l~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~g~~VgIIG~G~IG~~ 160 (332)
T PRK08605 81 DTYDLELATKYNLIISNVPSYSPESIAEFTVTQAINLVRHFNQIQTKVREHDFRWEPPILSRSIKDLKVAVIGTGRIGLA 160 (332)
T ss_pred chhhHHHHHHCCCEEEeCCCCChHHHHHHHHHHHHHHhcChHHHHHHHHhCCcccccccccceeCCCEEEEECCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999988532 23588999999999999999999
Q ss_pred HHHHh-hcCCCEEEEECCCCChhHHHHcCCccc-CHHHHhccCCEEEEecCCCccccccccHhHhccCCCceEEEEccCC
Q 007512 212 VARRA-KGLGMHVIAHDPYAPADRARAIGVDLV-SFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARG 289 (600)
Q Consensus 212 vA~~l-~~~g~~V~~~d~~~~~~~a~~~g~~~~-~l~ell~~aDvV~l~~Pl~~~t~~li~~~~l~~mk~gailvNvarg 289 (600)
+|++| ++|||+|++||++..... ..++... ++++++++||+|++|+|++++|+++++++.++.||+|++|||++||
T Consensus 161 vA~~L~~~~g~~V~~~d~~~~~~~--~~~~~~~~~l~ell~~aDvIvl~lP~t~~t~~li~~~~l~~mk~gailIN~sRG 238 (332)
T PRK08605 161 VAKIFAKGYGSDVVAYDPFPNAKA--ATYVDYKDTIEEAVEGADIVTLHMPATKYNHYLFNADLFKHFKKGAVFVNCARG 238 (332)
T ss_pred HHHHHHhcCCCEEEEECCCccHhH--HhhccccCCHHHHHHhCCEEEEeCCCCcchhhhcCHHHHhcCCCCcEEEECCCC
Confidence 99999 789999999999864322 2234443 8999999999999999999999999999999999999999999999
Q ss_pred ccccHHHHHHhHhcCCceEEEEeccCCCC--CCCCC-----------ccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHH
Q 007512 290 GVIDEEALVRALDSGRVAQAALDVFTEEP--PPADS-----------KLVQHERVTVTPHLGASTMEAQEGVAIEIAEAV 356 (600)
Q Consensus 290 ~ivde~aL~~aL~~g~i~ga~lDv~~~EP--~~~~~-----------~L~~~~nvilTPH~~~~t~ea~~~~~~~~~~~l 356 (600)
.++|+++|+++|++|+|+||++|||+.|| +|.++ +||.+||+++|||+|++|.|+++++...+++|+
T Consensus 239 ~~vd~~aL~~aL~~g~i~gaalDV~~~Ep~~~~~~~~~~~~~~~~~~~L~~~~nvilTPHia~~t~e~~~~~~~~~~~n~ 318 (332)
T PRK08605 239 SLVDTKALLDALDNGLIKGAALDTYEFERPLFPSDQRGQTINDPLLESLINREDVILTPHIAFYTDAAVKNLIVDALDAT 318 (332)
T ss_pred cccCHHHHHHHHHhCCeeEEEEecccCCCCccccccccccccchhhHHHhcCCCEEECCcccccHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998 34443 499999999999999999999999999999999
Q ss_pred HHHHcCCCCCcccc
Q 007512 357 VGALKGELAATAVN 370 (600)
Q Consensus 357 ~~~l~g~~~~~~vn 370 (600)
.+|++|+...+.+|
T Consensus 319 ~~~~~g~~~~~~~~ 332 (332)
T PRK08605 319 LEVLQTGTTRLRVN 332 (332)
T ss_pred HHHHcCCCCCCCcC
Confidence 99999999888775
|
|
| >PRK12480 D-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-58 Score=483.65 Aligned_cols=308 Identities=24% Similarity=0.367 Sum_probs=268.1
Q ss_pred CeEEEecCCCHh---HHHHhcccC-cEEEc-cCCCHhHHhhhcCCceEEEEcCCCCCCHHHHhccC-CCceEEEEcCccc
Q 007512 59 PTVLIAEKLGQA---GLDLLNEFA-NVDCA-YNLSPEELCTKISLCDALIVRSGTKVNRDVFESSA-GRLKVVGRAGVGI 132 (600)
Q Consensus 59 ~~ilv~~~l~~~---~~~~l~~~~-~v~~~-~~~~~~el~~~i~~~d~li~~~~~~~~~~~l~~~~-~~Lk~I~~~g~G~ 132 (600)
+||++.+.-..+ ..+++++.. ++... ..++ +|+.+.+.++|+++++..++++++++++++ ++||+|++.|+|+
T Consensus 2 ~~i~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~ii~~~~~~~~~~~l~~~~~~~Lk~I~~~~~G~ 80 (330)
T PRK12480 2 TKIMFFGTRDYEKEMALNWGKKNNVEVTTSKELLS-SATVDQLKDYDGVTTMQFGKLENDVYPKLESYGIKQIAQRTAGF 80 (330)
T ss_pred cEEEEEeCcHHHHHHHHHHHHhcCeEEEEcCCCCC-HHHHHHhCCCCEEEEecCCCCCHHHHHhhhhcCceEEEeccccc
Confidence 788877654332 334455543 44442 2344 445889999999998866789999999984 3899999999999
Q ss_pred CccChhHHHhCCceeecCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCccccc-cccceeccCCEEEEEecChhHHH
Q 007512 133 DNVDLAAATEFGCLVVNAPTANTVAAAEHGIALLAAMARNVAQADASVKAGKWQRN-KYVGVSLVGKTLAVLGFGKVGSE 211 (600)
Q Consensus 133 d~iD~~aa~~~GI~V~n~p~~~~~~vAE~~l~lll~~~R~i~~~~~~~~~g~W~~~-~~~g~~l~gktiGIIGlG~IG~~ 211 (600)
||||+++|+++||.|+|+|++++.+||||++++||+++|+++.+++.+++|.|... ...|++|+|++|||||+|.||++
T Consensus 81 d~id~~~~~~~gI~v~n~~~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~~~~~w~~~~~~~~l~g~~VgIIG~G~IG~~ 160 (330)
T PRK12480 81 DMYDLDLAKKHNIVISNVPSYSPETIAEYSVSIALQLVRRFPDIERRVQAHDFTWQAEIMSKPVKNMTVAIIGTGRIGAA 160 (330)
T ss_pred chhhHHHHHHCCCEEEeCCCCChHHHHHHHHHHHHHHHHhHHHHHHHHHhCCcccccccCccccCCCEEEEECCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999976432 24578999999999999999999
Q ss_pred HHHHhhcCCCEEEEECCCCChhHHHHcCCcc-cCHHHHhccCCEEEEecCCCccccccccHhHhccCCCceEEEEccCCc
Q 007512 212 VARRAKGLGMHVIAHDPYAPADRARAIGVDL-VSFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGG 290 (600)
Q Consensus 212 vA~~l~~~g~~V~~~d~~~~~~~a~~~g~~~-~~l~ell~~aDvV~l~~Pl~~~t~~li~~~~l~~mk~gailvNvarg~ 290 (600)
+|++|++|||+|++||++...... .... .++++++++||+|++|+|++++|+++++++.|+.||+|++|||+|||.
T Consensus 161 vA~~L~~~G~~V~~~d~~~~~~~~---~~~~~~~l~ell~~aDiVil~lP~t~~t~~li~~~~l~~mk~gavlIN~aRG~ 237 (330)
T PRK12480 161 TAKIYAGFGATITAYDAYPNKDLD---FLTYKDSVKEAIKDADIISLHVPANKESYHLFDKAMFDHVKKGAILVNAARGA 237 (330)
T ss_pred HHHHHHhCCCEEEEEeCChhHhhh---hhhccCCHHHHHhcCCEEEEeCCCcHHHHHHHhHHHHhcCCCCcEEEEcCCcc
Confidence 999999999999999988632211 1223 379999999999999999999999999999999999999999999999
Q ss_pred cccHHHHHHhHhcCCceEEEEeccCCCCCC-------------CCCccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHH
Q 007512 291 VIDEEALVRALDSGRVAQAALDVFTEEPPP-------------ADSKLVQHERVTVTPHLGASTMEAQEGVAIEIAEAVV 357 (600)
Q Consensus 291 ivde~aL~~aL~~g~i~ga~lDv~~~EP~~-------------~~~~L~~~~nvilTPH~~~~t~ea~~~~~~~~~~~l~ 357 (600)
++|+++|+++|++|+|+||+||||+.||++ ..+|||++|||++|||+|+.|.|+++++...+++|+.
T Consensus 238 ~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~~~~~~~~~~~~~~~~L~~~~nvilTPHia~~t~~~~~~~~~~~~~n~~ 317 (330)
T PRK12480 238 VINTPDLIAAVNDGTLLGAAIDTYENEAAYFTNDWTNKDIDDKTLLELIEHERILVTPHIAFFSDEAVQNLVEGGLNAAL 317 (330)
T ss_pred ccCHHHHHHHHHcCCeeEEEEeccCCCCccccccccccccCchhhHHHhcCCCEEECCcccccHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999962 1247999999999999999999999999999999999
Q ss_pred HHHcCCCCCcccc
Q 007512 358 GALKGELAATAVN 370 (600)
Q Consensus 358 ~~l~g~~~~~~vn 370 (600)
++++|+...+.+|
T Consensus 318 ~~~~~~~~~~~~~ 330 (330)
T PRK12480 318 SVINTGTCETRLN 330 (330)
T ss_pred HHHhCCCCcccCC
Confidence 9999999888776
|
|
| >PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-55 Score=464.42 Aligned_cols=273 Identities=29% Similarity=0.445 Sum_probs=244.6
Q ss_pred CeEEEecCCCHhHHHHhcccCcEEEccC--CCHhHHhhhcCCceEEEEcCCCCCCHHHHhccCCCceEEEEcCcccCccC
Q 007512 59 PTVLIAEKLGQAGLDLLNEFANVDCAYN--LSPEELCTKISLCDALIVRSGTKVNRDVFESSAGRLKVVGRAGVGIDNVD 136 (600)
Q Consensus 59 ~~ilv~~~l~~~~~~~l~~~~~v~~~~~--~~~~el~~~i~~~d~li~~~~~~~~~~~l~~~~~~Lk~I~~~g~G~d~iD 136 (600)
|||++.+.++ ...+.+++++++.+... .+.+ .++++|++++++.+++++++++ . ++||+|+++++|+||||
T Consensus 1 mkIl~d~~~~-~~~~~~~~~~ev~~~~~~~~~~~----~l~daD~liv~s~t~v~~~ll~-~-~~Lk~I~~~~~G~D~iD 73 (378)
T PRK15438 1 MKILVDENMP-YARELFSRLGEVKAVPGRPIPVA----QLADADALMVRSVTKVNESLLA-G-KPIKFVGTATAGTDHVD 73 (378)
T ss_pred CEEEEeCCcc-hHHHHHhhcCcEEEeCCCCCCHH----HhCCCcEEEEcCCCCCCHHHhc-C-CCCeEEEECcccccccC
Confidence 5799988774 66778887778876543 2333 4789999999998999999996 4 59999999999999999
Q ss_pred hhHHHhCCceeecCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCccccccccceeccCCEEEEEecChhHHHHHHHh
Q 007512 137 LAAATEFGCLVVNAPTANTVAAAEHGIALLAAMARNVAQADASVKAGKWQRNKYVGVSLVGKTLAVLGFGKVGSEVARRA 216 (600)
Q Consensus 137 ~~aa~~~GI~V~n~p~~~~~~vAE~~l~lll~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktiGIIGlG~IG~~vA~~l 216 (600)
+++|+++||.|+|+||+|+.+||||++++||+++|+ .|.+|.||||||||+|+||+.+|+++
T Consensus 74 ~~~~~~~gI~v~napg~na~aVAE~~~~~lL~l~r~------------------~g~~L~gktvGIIG~G~IG~~vA~~l 135 (378)
T PRK15438 74 EAWLKQAGIGFSAAPGCNAIAVVEYVFSSLLMLAER------------------DGFSLHDRTVGIVGVGNVGRRLQARL 135 (378)
T ss_pred HHHHHHCCCEEEECCCcCchHHHHHHHHHHHHHhcc------------------CCCCcCCCEEEEECcCHHHHHHHHHH
Confidence 999999999999999999999999999999999985 24589999999999999999999999
Q ss_pred hcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEecCCCcc----ccccccHhHhccCCCceEEEEccCCccc
Q 007512 217 KGLGMHVIAHDPYAPADRARAIGVDLVSFDEAIATADFISLHMPLTPA----TSKVLNDETFGKMKKGVRIINVARGGVI 292 (600)
Q Consensus 217 ~~~g~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Pl~~~----t~~li~~~~l~~mk~gailvNvarg~iv 292 (600)
++|||+|++|||..... .....+.+|++++++||+|++|+|+|++ |++|++++.|++||+|++|||+|||++|
T Consensus 136 ~a~G~~V~~~dp~~~~~---~~~~~~~~L~ell~~sDiI~lh~PLt~~g~~~T~~li~~~~l~~mk~gailIN~aRG~vV 212 (378)
T PRK15438 136 EALGIKTLLCDPPRADR---GDEGDFRSLDELVQEADILTFHTPLFKDGPYKTLHLADEKLIRSLKPGAILINACRGAVV 212 (378)
T ss_pred HHCCCEEEEECCccccc---ccccccCCHHHHHhhCCEEEEeCCCCCCcccccccccCHHHHhcCCCCcEEEECCCchhc
Confidence 99999999999864221 1223467899999999999999999996 9999999999999999999999999999
Q ss_pred cHHHHHHhHhcCCceEEEEeccCCCCCCCCCccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHc
Q 007512 293 DEEALVRALDSGRVAQAALDVFTEEPPPADSKLVQHERVTVTPHLGASTMEAQEGVAIEIAEAVVGALK 361 (600)
Q Consensus 293 de~aL~~aL~~g~i~ga~lDv~~~EP~~~~~~L~~~~nvilTPH~~~~t~ea~~~~~~~~~~~l~~~l~ 361 (600)
|++||+++|++|++.||+||||++||+ .+++|+.+++ ++|||+||+|.|++.+...++++++.+++.
T Consensus 213 De~AL~~aL~~g~~~ga~LDV~e~EP~-~~~~Ll~~~~-i~TPHiAg~s~e~~~~~~~~~~~~l~~~~~ 279 (378)
T PRK15438 213 DNTALLTCLNEGQKLSVVLDVWEGEPE-LNVELLKKVD-IGTPHIAGYTLEGKARGTTQVFEAYSKFIG 279 (378)
T ss_pred CHHHHHHHHHhCCCcEEEEecCCCCCC-CchhhhhcCC-EECCccCcCcHHHHHHHHHHHHHHHHHHHc
Confidence 999999999999999999999999996 5778988776 899999999999999999999999999984
|
|
| >KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-55 Score=452.44 Aligned_cols=282 Identities=33% Similarity=0.543 Sum_probs=256.4
Q ss_pred CCHhHHhhhcCCceEEEEcCCC-CCCHHHHhccCCCceEEEEcCcccCccChhHHHhCCceeecCCCCChHHHHHHHHHH
Q 007512 87 LSPEELCTKISLCDALIVRSGT-KVNRDVFESSAGRLKVVGRAGVGIDNVDLAAATEFGCLVVNAPTANTVAAAEHGIAL 165 (600)
Q Consensus 87 ~~~~el~~~i~~~d~li~~~~~-~~~~~~l~~~~~~Lk~I~~~g~G~d~iD~~aa~~~GI~V~n~p~~~~~~vAE~~l~l 165 (600)
.+.+++...+.++...+....+ ..+.+++.+..|+||+|..+|+|+||||+++|++|||.|+|+|+.++.+|||+++++
T Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~p~lK~i~t~~vG~D~vDl~a~~krgI~V~nvp~~~~~~vAd~~~~l 128 (336)
T KOG0069|consen 49 LIKTDFLKRIADSRIAISVPFTGAFTKELISALSPNLKLIVTMSVGYDHVDLEAARKRGIRVANVPDVLTDDVADLAVSL 128 (336)
T ss_pred cchhhhhhhccceeeeeecccchHHhHhhhhhcCCCeeEEEEeecccchhhHHHHHhcCceEeccCCcchHHHHHHHHHH
Confidence 3445566677776665554333 478888888778999999999999999999999999999999999999999999999
Q ss_pred HHHHHhchHHHHHHHHcCccccc--cccceeccCCEEEEEecChhHHHHHHHhhcCCCEEEEECCCC-ChhHHHHcCCcc
Q 007512 166 LAAMARNVAQADASVKAGKWQRN--KYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYA-PADRARAIGVDL 242 (600)
Q Consensus 166 ll~~~R~i~~~~~~~~~g~W~~~--~~~g~~l~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~-~~~~a~~~g~~~ 242 (600)
+|.+.|++..+++.+++|+|... ...|..+.||||||+|+|+||+.+|+||++||+.+.++.++. ..+.+.+.+.+.
T Consensus 129 il~~~R~~~~g~~~~~~g~w~~~~~~~~g~~~~gK~vgilG~G~IG~~ia~rL~~Fg~~i~y~~r~~~~~~~~~~~~~~~ 208 (336)
T KOG0069|consen 129 LLALLRRFSEGNEMVRNGGWGWAGGWPLGYDLEGKTVGILGLGRIGKAIAKRLKPFGCVILYHSRTQLPPEEAYEYYAEF 208 (336)
T ss_pred HHHHHhhhhhhhhhhhcCCccccCCccccccccCCEEEEecCcHHHHHHHHhhhhccceeeeecccCCchhhHHHhcccc
Confidence 99999999999999999999321 235778999999999999999999999999998888888866 567777777788
Q ss_pred cCHHHHhccCCEEEEecCCCccccccccHhHhccCCCceEEEEccCCccccHHHHHHhHhcCCceEEEEeccCCCCCCCC
Q 007512 243 VSFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVIDEEALVRALDSGRVAQAALDVFTEEPPPAD 322 (600)
Q Consensus 243 ~~l~ell~~aDvV~l~~Pl~~~t~~li~~~~l~~mk~gailvNvarg~ivde~aL~~aL~~g~i~ga~lDv~~~EP~~~~ 322 (600)
+++++++++||+|++|||+|++|++++|++.|.+||+|++|||+|||+++|++++++||++|+|+|||+|||++|| +.+
T Consensus 209 ~d~~~~~~~sD~ivv~~pLt~~T~~liNk~~~~~mk~g~vlVN~aRG~iide~~l~eaL~sG~i~~aGlDVf~~EP-~~~ 287 (336)
T KOG0069|consen 209 VDIEELLANSDVIVVNCPLTKETRHLINKKFIEKMKDGAVLVNTARGAIIDEEALVEALKSGKIAGAGLDVFEPEP-PVD 287 (336)
T ss_pred cCHHHHHhhCCEEEEecCCCHHHHHHhhHHHHHhcCCCeEEEeccccccccHHHHHHHHhcCCcccccccccCCCC-CCC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999999999 789
Q ss_pred CccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCccc
Q 007512 323 SKLVQHERVTVTPHLGASTMEAQEGVAIEIAEAVVGALKGELAATAV 369 (600)
Q Consensus 323 ~~L~~~~nvilTPH~~~~t~ea~~~~~~~~~~~l~~~l~g~~~~~~v 369 (600)
++|++++|+++|||+|+.|.+++++++..++.|+.+++.|++....+
T Consensus 288 ~~l~~~dnvv~~PHigs~t~~t~~~m~~~v~~n~~~~~~g~~~~~~~ 334 (336)
T KOG0069|consen 288 HPLLTLDNVVILPHIGSATLETREKMAEIVLNNLLAFFSGKPLLTPV 334 (336)
T ss_pred cchhcccceeEecccccCcHHHHHHHHHHHHHHHHHHHccCCCCCcC
Confidence 99999999999999999999999999999999999999999876544
|
|
| >PRK00257 erythronate-4-phosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-54 Score=460.24 Aligned_cols=282 Identities=28% Similarity=0.419 Sum_probs=249.1
Q ss_pred CeEEEecCCCHhHHHHhcccCcEEEccCCCHhHHhhhcCCceEEEEcCCCCCCHHHHhccCCCceEEEEcCcccCccChh
Q 007512 59 PTVLIAEKLGQAGLDLLNEFANVDCAYNLSPEELCTKISLCDALIVRSGTKVNRDVFESSAGRLKVVGRAGVGIDNVDLA 138 (600)
Q Consensus 59 ~~ilv~~~l~~~~~~~l~~~~~v~~~~~~~~~el~~~i~~~d~li~~~~~~~~~~~l~~~~~~Lk~I~~~g~G~d~iD~~ 138 (600)
|||++.+.++ ...+.+++++++.+.... +...+.++++|++++++.+++++++++. ++||+|+++++|+||||++
T Consensus 1 mkI~~d~~~p-~~~~~~~~~~~v~~~~~~--~~~~~~l~daD~liv~~~t~v~~~ll~~--~~Lk~I~~~~~G~D~iD~~ 75 (381)
T PRK00257 1 MKIVADENIP-LLDAFFAGFGEIRRLPGR--AFDRAAVRDADVLLVRSVTRVDRALLEG--SRVRFVGTCTIGTDHLDLD 75 (381)
T ss_pred CEEEEecCch-hHHHHHhhCCcEEEcCCc--ccCHHHhCCceEEEEeCCCCCCHHHhcC--CCCeEEEECCccccccCHH
Confidence 6899888874 446667777777654321 1123467999999999989999999984 5899999999999999999
Q ss_pred HHHhCCceeecCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCccccccccceeccCCEEEEEecChhHHHHHHHhhc
Q 007512 139 AATEFGCLVVNAPTANTVAAAEHGIALLAAMARNVAQADASVKAGKWQRNKYVGVSLVGKTLAVLGFGKVGSEVARRAKG 218 (600)
Q Consensus 139 aa~~~GI~V~n~p~~~~~~vAE~~l~lll~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktiGIIGlG~IG~~vA~~l~~ 218 (600)
+|+++||.|+|+||+|+.+||||++++||+++|+ .|.++.||||||||+|.||+.+|+++++
T Consensus 76 ~~~~~gI~v~napg~na~aVAE~v~~~lL~l~r~------------------~g~~l~gktvGIIG~G~IG~~va~~l~a 137 (381)
T PRK00257 76 YFAEAGITWSSAPGCNARGVVDYVLGSLLTLAER------------------EGVDLAERTYGVVGAGHVGGRLVRVLRG 137 (381)
T ss_pred HHHHCCCEEEECCCcChHHHHHHHHHHHHHHhcc------------------cCCCcCcCEEEEECCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999884 2568999999999999999999999999
Q ss_pred CCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEecCCCc----cccccccHhHhccCCCceEEEEccCCccccH
Q 007512 219 LGMHVIAHDPYAPADRARAIGVDLVSFDEAIATADFISLHMPLTP----ATSKVLNDETFGKMKKGVRIINVARGGVIDE 294 (600)
Q Consensus 219 ~g~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Pl~~----~t~~li~~~~l~~mk~gailvNvarg~ivde 294 (600)
|||+|++|||.... ...+....++++++++||+|++|+|+|+ .|+++++++.|++||+|++|||+|||++||+
T Consensus 138 ~G~~V~~~Dp~~~~---~~~~~~~~~l~ell~~aDiV~lh~Plt~~g~~~T~~li~~~~l~~mk~gailIN~aRG~vVde 214 (381)
T PRK00257 138 LGWKVLVCDPPRQE---AEGDGDFVSLERILEECDVISLHTPLTKEGEHPTRHLLDEAFLASLRPGAWLINASRGAVVDN 214 (381)
T ss_pred CCCEEEEECCcccc---cccCccccCHHHHHhhCCEEEEeCcCCCCccccccccCCHHHHhcCCCCeEEEECCCCcccCH
Confidence 99999999986431 1223456789999999999999999998 5999999999999999999999999999999
Q ss_pred HHHHHhHhcCCceEEEEeccCCCCCCCCCccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCcc
Q 007512 295 EALVRALDSGRVAQAALDVFTEEPPPADSKLVQHERVTVTPHLGASTMEAQEGVAIEIAEAVVGALKGELAATA 368 (600)
Q Consensus 295 ~aL~~aL~~g~i~ga~lDv~~~EP~~~~~~L~~~~nvilTPH~~~~t~ea~~~~~~~~~~~l~~~l~g~~~~~~ 368 (600)
+||+++|++|++.||+||||++||+ .+++|+.. |+++|||+||+|.|++.+...++++++.+|+.+......
T Consensus 215 ~AL~~aL~~g~i~~a~LDV~e~EP~-~~~~L~~~-nvi~TPHiAg~s~e~~~r~~~~~~~nl~~~~~~~~~~~~ 286 (381)
T PRK00257 215 QALREALLSGEDLDAVLDVWEGEPQ-IDLELADL-CTIATPHIAGYSLDGKARGTAQIYQALCRFFGIPARVSL 286 (381)
T ss_pred HHHHHHHHhCCCcEEEEeCCCCCCC-CChhhhhC-CEEEcCccccCCHHHHHHHHHHHHHHHHHHHcCCCccch
Confidence 9999999999999999999999996 57889975 999999999999999999999999999999988765443
|
|
| >PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-54 Score=447.69 Aligned_cols=267 Identities=24% Similarity=0.306 Sum_probs=235.7
Q ss_pred cCCceEEEEcCCCCCCHHHHhccCCCceEEEEcCcccCccChhH-----HHhCCceeecCCC-CChHHHHHHHHHHHHHH
Q 007512 96 ISLCDALIVRSGTKVNRDVFESSAGRLKVVGRAGVGIDNVDLAA-----ATEFGCLVVNAPT-ANTVAAAEHGIALLAAM 169 (600)
Q Consensus 96 i~~~d~li~~~~~~~~~~~l~~~~~~Lk~I~~~g~G~d~iD~~a-----a~~~GI~V~n~p~-~~~~~vAE~~l~lll~~ 169 (600)
..++|+++++.. +.++++ . ++||||++.|+|+|++|... +..+||.|+|+++ +++.+||||++++||++
T Consensus 36 ~~~a~~~~~~~~---~~~~l~-~-~~Lk~I~~~~aG~d~i~~~~~~~~~~~~~~i~v~~~~~~~~~~~vAE~~l~~~L~~ 110 (312)
T PRK15469 36 NDPADYALVWHP---PVEMLA-G-RDLKAVFALGAGVDSILSKLQAHPEMLDPSVPLFRLEDTGMGEQMQEYAVSQVLHW 110 (312)
T ss_pred CccCeEEEEeCC---ChHHhc-c-CCceEEEEcccccchhhhhhccccccCCCCceEEEecCCcccHHHHHHHHHHHHHH
Confidence 478999998653 457776 3 59999999999999998322 3458999999874 78999999999999999
Q ss_pred HhchHHHHHHHHcCccccccccceeccCCEEEEEecChhHHHHHHHhhcCCCEEEEECCCCChhHHHHcCCcccCHHHHh
Q 007512 170 ARNVAQADASVKAGKWQRNKYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPADRARAIGVDLVSFDEAI 249 (600)
Q Consensus 170 ~R~i~~~~~~~~~g~W~~~~~~g~~l~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~~~~a~~~g~~~~~l~ell 249 (600)
+|+++++.+.+++|.|.+. .+.++.||||||||+|.||+.+|++|++|||+|++||++.........-....++++++
T Consensus 111 ~r~~~~~~~~~~~~~w~~~--~~~~l~g~tvgIvG~G~IG~~vA~~l~afG~~V~~~~~~~~~~~~~~~~~~~~~l~e~l 188 (312)
T PRK15469 111 FRRFDDYQALQNSSHWQPL--PEYHREDFTIGILGAGVLGSKVAQSLQTWGFPLRCWSRSRKSWPGVQSFAGREELSAFL 188 (312)
T ss_pred HcChHHHHHHHHhCCcCCC--CCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCCCCceeecccccHHHHH
Confidence 9999999999999999753 45689999999999999999999999999999999998653211000111345899999
Q ss_pred ccCCEEEEecCCCccccccccHhHhccCCCceEEEEccCCccccHHHHHHhHhcCCceEEEEeccCCCCCCCCCccccCC
Q 007512 250 ATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVIDEEALVRALDSGRVAQAALDVFTEEPPPADSKLVQHE 329 (600)
Q Consensus 250 ~~aDvV~l~~Pl~~~t~~li~~~~l~~mk~gailvNvarg~ivde~aL~~aL~~g~i~ga~lDv~~~EP~~~~~~L~~~~ 329 (600)
++||+|++|+|+|++|+++++++.|++||+|++|||+|||++||+++|++||++|+++||++|||++||++.++|||.+|
T Consensus 189 ~~aDvvv~~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~vVde~aL~~aL~~g~i~gaalDVf~~EPl~~~~pl~~~~ 268 (312)
T PRK15469 189 SQTRVLINLLPNTPETVGIINQQLLEQLPDGAYLLNLARGVHVVEDDLLAALDSGKVKGAMLDVFSREPLPPESPLWQHP 268 (312)
T ss_pred hcCCEEEECCCCCHHHHHHhHHHHHhcCCCCcEEEECCCccccCHHHHHHHHhcCCeeeEEecCCCCCCCCCCChhhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCccccC
Q 007512 330 RVTVTPHLGASTMEAQEGVAIEIAEAVVGALKGELAATAVNA 371 (600)
Q Consensus 330 nvilTPH~~~~t~ea~~~~~~~~~~~l~~~l~g~~~~~~vn~ 371 (600)
|+++|||+|++|.+. ++...+++|+.+|++|+++.+.|+.
T Consensus 269 nvi~TPHiag~t~~~--~~~~~~~~n~~~~~~g~~~~~~V~~ 308 (312)
T PRK15469 269 RVAITPHVAAVTRPA--EAVEYISRTIAQLEKGERVCGQVDR 308 (312)
T ss_pred CeEECCcCCCCcCHH--HHHHHHHHHHHHHHcCCCCcccCCc
Confidence 999999999999875 4678889999999999999888874
|
|
| >PRK06436 glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-53 Score=440.87 Aligned_cols=283 Identities=24% Similarity=0.390 Sum_probs=244.8
Q ss_pred eEEEecCCCHhHHHHhccc---CcEEEccCCCHhHHhhhcCCceEEEEcCCCCCCHHHHhccCCCceEEEEcCcccCccC
Q 007512 60 TVLIAEKLGQAGLDLLNEF---ANVDCAYNLSPEELCTKISLCDALIVRSGTKVNRDVFESSAGRLKVVGRAGVGIDNVD 136 (600)
Q Consensus 60 ~ilv~~~l~~~~~~~l~~~---~~v~~~~~~~~~el~~~i~~~d~li~~~~~~~~~~~l~~~~~~Lk~I~~~g~G~d~iD 136 (600)
++++..++.+...+.+.+. .++.+.. ...++|++++++. . -.+ ++||||+++|+|+||||
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~a~~~~~~~~------~-~~~-~~Lk~I~~~~aG~D~id 64 (303)
T PRK06436 2 NVYVNFPMSKKLLEICRDILDLDDVHWYP---------DYYDAEAILIKGR------Y-VPG-KKTKMIQSLSAGVDHID 64 (303)
T ss_pred eEEEEccCCHHHHHHHHhhcccceeEecc---------ccCCCCEEEecCC------c-CCC-CCeEEEEECCcccCccc
Confidence 4667788888887765432 2333211 2568888876542 1 223 58999999999999999
Q ss_pred hhHHHhCCceeecCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCccccccccceeccCCEEEEEecChhHHHHHHHh
Q 007512 137 LAAATEFGCLVVNAPTANTVAAAEHGIALLAAMARNVAQADASVKAGKWQRNKYVGVSLVGKTLAVLGFGKVGSEVARRA 216 (600)
Q Consensus 137 ~~aa~~~GI~V~n~p~~~~~~vAE~~l~lll~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktiGIIGlG~IG~~vA~~l 216 (600)
+++|+++||.+.|. |+++.+||||++++||+++|+++++++.+++|+|.+. .+.+|+||||||||+|.||+.+|+++
T Consensus 65 ~~~~~~~~i~~~~~-g~~~~~VAE~~l~l~L~l~R~i~~~~~~~~~g~w~~~--~~~~L~gktvgIiG~G~IG~~vA~~l 141 (303)
T PRK06436 65 VSGIPENVVLCSNA-GAYSISVAEHAFALLLAWAKNICENNYNMKNGNFKQS--PTKLLYNKSLGILGYGGIGRRVALLA 141 (303)
T ss_pred HHHHHhCCeEEEcC-CCCcHHHHHHHHHHHHHHHcChHHHHHHHHcCCCCCC--CCCCCCCCEEEEECcCHHHHHHHHHH
Confidence 99999998887775 8999999999999999999999999999999999864 46899999999999999999999999
Q ss_pred hcCCCEEEEECCCCChhHHHHcCC--cccCHHHHhccCCEEEEecCCCccccccccHhHhccCCCceEEEEccCCccccH
Q 007512 217 KGLGMHVIAHDPYAPADRARAIGV--DLVSFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVIDE 294 (600)
Q Consensus 217 ~~~g~~V~~~d~~~~~~~a~~~g~--~~~~l~ell~~aDvV~l~~Pl~~~t~~li~~~~l~~mk~gailvNvarg~ivde 294 (600)
++|||+|++||++... .++ ...++++++++||+|++|+|++++|+++++++.|++||+|++|||+|||+++|+
T Consensus 142 ~afG~~V~~~~r~~~~-----~~~~~~~~~l~ell~~aDiv~~~lp~t~~T~~li~~~~l~~mk~ga~lIN~sRG~~vd~ 216 (303)
T PRK06436 142 KAFGMNIYAYTRSYVN-----DGISSIYMEPEDIMKKSDFVLISLPLTDETRGMINSKMLSLFRKGLAIINVARADVVDK 216 (303)
T ss_pred HHCCCEEEEECCCCcc-----cCcccccCCHHHHHhhCCEEEECCCCCchhhcCcCHHHHhcCCCCeEEEECCCccccCH
Confidence 9999999999987532 122 245899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhHhcCCceEEEEeccCCCCCCCCCccccCCcEEEcCCCC-CCcHHHHHHHHHHHHHHHHHHHcCCCCCccccC
Q 007512 295 EALVRALDSGRVAQAALDVFTEEPPPADSKLVQHERVTVTPHLG-ASTMEAQEGVAIEIAEAVVGALKGELAATAVNA 371 (600)
Q Consensus 295 ~aL~~aL~~g~i~ga~lDv~~~EP~~~~~~L~~~~nvilTPH~~-~~t~ea~~~~~~~~~~~l~~~l~g~~~~~~vn~ 371 (600)
++|+++|++|++.||++|||+.||++.++ .+||+++|||++ +.|.|+++++...+++|+.+|++|++ .+.|+.
T Consensus 217 ~aL~~aL~~g~i~~a~lDV~~~EP~~~~~---~~~nviiTPHi~g~~t~e~~~~~~~~~~~ni~~~~~g~~-~~~V~~ 290 (303)
T PRK06436 217 NDMLNFLRNHNDKYYLSDVWWNEPIITET---NPDNVILSPHVAGGMSGEIMQPAVALAFENIKNFFEGKP-KNIVRK 290 (303)
T ss_pred HHHHHHHHcCCceEEEEccCCCCCCCccC---CCCCEEECCccccccCHHHHHHHHHHHHHHHHHHHcCCC-CceEch
Confidence 99999999999999999999999987665 589999999976 58999999999999999999999876 566653
|
|
| >PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-45 Score=351.55 Aligned_cols=176 Identities=46% Similarity=0.791 Sum_probs=159.4
Q ss_pred HHHHHHHHhchHHHHHHHHcCcc-ccccccceeccCCEEEEEecChhHHHHHHHhhcCCCEEEEECCCCChhH-HHHcCC
Q 007512 163 IALLAAMARNVAQADASVKAGKW-QRNKYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPADR-ARAIGV 240 (600)
Q Consensus 163 l~lll~~~R~i~~~~~~~~~g~W-~~~~~~g~~l~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~~~~-a~~~g~ 240 (600)
+++||+++|+++++++.+++|.| .+....+.+++|+||||||+|.||+.+|+++++|||+|++|||+..... +...++
T Consensus 1 i~l~L~~~R~~~~~~~~~~~~~W~~~~~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~~~~ 80 (178)
T PF02826_consen 1 IALMLALLRRLPEYHEAQRNGEWASRERFPGRELRGKTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPEEGADEFGV 80 (178)
T ss_dssp HHHHHHHHTTHHHHHHHHHTTBHHHHTTTTBS-STTSEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHHHHHHHTTE
T ss_pred ChHHHHHHhCHHHHHHHHHcCCCCCCcCCCccccCCCEEEEEEEcCCcCeEeeeeecCCceeEEecccCChhhhcccccc
Confidence 58999999999999999999999 3345678999999999999999999999999999999999999985544 667788
Q ss_pred cccCHHHHhccCCEEEEecCCCccccccccHhHhccCCCceEEEEccCCccccHHHHHHhHhcCCceEEEEeccCCCCCC
Q 007512 241 DLVSFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVIDEEALVRALDSGRVAQAALDVFTEEPPP 320 (600)
Q Consensus 241 ~~~~l~ell~~aDvV~l~~Pl~~~t~~li~~~~l~~mk~gailvNvarg~ivde~aL~~aL~~g~i~ga~lDv~~~EP~~ 320 (600)
...++++++++||+|++|+|+|++|+++|+++.|++||+|++|||+|||++||++||+++|++|+++||++|||+.||++
T Consensus 81 ~~~~l~ell~~aDiv~~~~plt~~T~~li~~~~l~~mk~ga~lvN~aRG~~vde~aL~~aL~~g~i~ga~lDV~~~EP~~ 160 (178)
T PF02826_consen 81 EYVSLDELLAQADIVSLHLPLTPETRGLINAEFLAKMKPGAVLVNVARGELVDEDALLDALESGKIAGAALDVFEPEPLP 160 (178)
T ss_dssp EESSHHHHHHH-SEEEE-SSSSTTTTTSBSHHHHHTSTTTEEEEESSSGGGB-HHHHHHHHHTTSEEEEEESS-SSSSSS
T ss_pred eeeehhhhcchhhhhhhhhccccccceeeeeeeeeccccceEEEeccchhhhhhhHHHHHHhhccCceEEEECCCCCCCC
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccccCCcEEEcCCCC
Q 007512 321 ADSKLVQHERVTVTPHLG 338 (600)
Q Consensus 321 ~~~~L~~~~nvilTPH~~ 338 (600)
.++||+++||+++|||+|
T Consensus 161 ~~~~l~~~~nvi~TPH~a 178 (178)
T PF02826_consen 161 ADSPLWDLPNVILTPHIA 178 (178)
T ss_dssp TTHHHHTSTTEEEESS-T
T ss_pred CCChHHcCCCEEEeCccC
Confidence 899999999999999985
|
All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A .... |
| >TIGR00719 sda_beta L-serine dehydratase, iron-sulfur-dependent, beta subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-39 Score=317.04 Aligned_cols=188 Identities=15% Similarity=0.207 Sum_probs=173.0
Q ss_pred cchHHHHHHHHHHHHHHhcCCCCceEEEEEEeecCCCCccccccccHHHHHhhchhhhccchhhccHHHHHhhcCceEEE
Q 007512 383 KPFVELAEKLGRLAVQLVAGGSGVKTVKVSYASSRAPDDLDTRLLRAMITKGLIEPISDVFVNLVNADYTAKQRGLRLTE 462 (600)
Q Consensus 383 ~p~~~la~~lG~l~~qL~~g~~~~k~v~i~~~Gs~a~~~~~~~~~~~a~l~GlL~~~~~~~vn~vnA~~~A~e~GI~v~~ 462 (600)
+.|-.+++|||++++||+++ .+++++++|+|+++ .++++|++++|+++|+|++..++ +|++||+.+|+++||++.|
T Consensus 19 ssht~laerlG~l~~ql~~~--~~~~I~i~~~Gsla-~t~~~~~~~~A~l~GlL~~~~~~-vn~vNA~~iAkerGI~v~~ 94 (208)
T TIGR00719 19 SSHTAGAAKIANVARSIFGN--EPEQIEFQFHGSFA-ETFKGHGTDRAIIGGILDFDPDD-DRIKTAFEIAEAAGIDIEF 94 (208)
T ss_pred hhHHHHHHHHHHHHHHHhcC--CCcEEEEEEEeeec-ccCCCchHHHHHHhhhcCCCCCc-hHHHHHHhhhhhcCceEEE
Confidence 35899999999999999998 89999999999998 77999999999999999888875 9999999999999999999
Q ss_pred EEeecCCCCC-CCCceEEEEEeecccccccccCCCcEEEEEEEEe-CCceEEEEEcceEEEeecCccEEEEEecCCCCCh
Q 007512 463 ERILLDGSPE-SPLEFIQVQIANVESKFASAISESGEIKVEGRVK-DGVPHLTKVGSFEVDVSLEGSIILCRQVDQPGMI 540 (600)
Q Consensus 463 ~~~~~~~~~~-~~~n~i~v~~~~~~~~~~~~~~~~~~~~v~Gsv~-gG~~~I~~Idgf~v~~~g~~~~Liv~~~D~pG~I 540 (600)
.+.+.. . .|+|++++++++ .++..+++.|+++ ||.+||++||||+||+.|++|+|++.|.|+||+|
T Consensus 95 ~~~~~~---~~~~~n~v~i~v~~---------~~g~~~~v~Gts~ggg~~riv~idg~~vd~~~~g~~L~~~~~D~PG~I 162 (208)
T TIGR00719 95 RTEDAG---DNVHPNSAKITFSD---------EKGEEEELIGISIGGGAIEITEINGFAIEFRGEHPAILLEHNDKFGTI 162 (208)
T ss_pred EECCCC---CCCCCCeEEEEEEc---------CCCCEEEEEEEEeCCCeEEEEEECCEEEEecCCccEEEEEeCCCCChH
Confidence 876532 3 699999999974 2334489999776 5789999999999999999999999999999999
Q ss_pred hhHHhhhhcCCccccceEeeeecCCCcEEEEEEeCCCCcHHHHHHH
Q 007512 541 GTVGSILGSENVNVSFMSVGRVAPRKHAVMAIGVDEQPRKETLKKI 586 (600)
Q Consensus 541 a~V~~iL~~~~INIa~m~v~R~~~g~~al~~i~~D~~~~~~~l~~l 586 (600)
++|+++|++++|||++|+++|..+|++|+|+|++|+++|++++++|
T Consensus 163 g~vg~~Lg~~~iNIa~m~v~r~~~g~~Ai~vl~vD~~v~~~vl~~i 208 (208)
T TIGR00719 163 AGVANLLAGFEINIEHLETAKKDIGNIALLTIEIDKNIDDHIKDAI 208 (208)
T ss_pred HHHHHHHHhCCccEEEEEEEecCCCCEEEEEEEeCCCCCHHHHhhC
Confidence 9999999999999999999999999999999999999999999975
|
This family of enzymes is not homologous to the pyridoxal phosphate-dependent threonine deaminases and eukaryotic serine deaminases. |
| >KOG0067 consensus Transcription factor CtBP [Transcription] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.6e-29 Score=259.09 Aligned_cols=288 Identities=29% Similarity=0.439 Sum_probs=244.7
Q ss_pred hcccCcEEEccCCCHhHHhhhc-CCceEEEEcCCCCCCHHHHhccCCCceEEEEcCcccCccChhHHHhCCceeecCCCC
Q 007512 75 LNEFANVDCAYNLSPEELCTKI-SLCDALIVRSGTKVNRDVFESSAGRLKVVGRAGVGIDNVDLAAATEFGCLVVNAPTA 153 (600)
Q Consensus 75 l~~~~~v~~~~~~~~~el~~~i-~~~d~li~~~~~~~~~~~l~~~~~~Lk~I~~~g~G~d~iD~~aa~~~GI~V~n~p~~ 153 (600)
|+....+-++...+..|+.+++ .++-+-+......++++.+++.+ -||++.+.|.|+||+|+.+|.+-||.|+|.|+.
T Consensus 49 lk~~atvafcdaqstqeIhekvLneavgam~yh~i~l~reDlEkfk-alRv~~rig~g~dn~dikaAseL~iavC~ip~~ 127 (435)
T KOG0067|consen 49 LKDLATVAFCDAQSTQEIHEKVLNEAVGAMMYHTITLPREDLEKFK-ALRVIVRIGSGYDNIDIKAASELGIAVCNIPSD 127 (435)
T ss_pred hhcchheeeecccchHHHHHHHHHHhhhcceeeecccchhhHHHhh-hhceeeeeccccchhhhhhhhhheeeeecccch
Confidence 4444556666666666666533 33333332234568999999985 799999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHHHHhchHHHHHHHHcCccccccc-------cceeccCCEEEEEecChhHHHHHHHhhcCCCEEEEE
Q 007512 154 NTVAAAEHGIALLAAMARNVAQADASVKAGKWQRNKY-------VGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAH 226 (600)
Q Consensus 154 ~~~~vAE~~l~lll~~~R~i~~~~~~~~~g~W~~~~~-------~g~~l~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~ 226 (600)
.-+.+|+-++.++|.++|+-....+.+++|.|..... -....+|.++|++|+|++|..++.++++||+.|+.|
T Consensus 128 ~Ve~~a~stl~hIl~l~rrntw~cq~l~eg~~~q~~~q~~e~a~g~~~~~G~~~g~~g~gr~g~av~~~A~afg~~~ify 207 (435)
T KOG0067|consen 128 AVEETADSTLCHILNLYRRNTWLCQALREGTCTQGLEQVREAACGLARIRGPTLGLIGFGRTGQAVALRAKAFGFVVIFY 207 (435)
T ss_pred hHHHHHHHHHHHHHhhhcccchhhhhhcccceeechhhhhhhhhccccccccceeeeccccccceehhhhhcccceeeee
Confidence 9999999999999999999999999999999975322 234689999999999999999999999999999999
Q ss_pred CCCCChhHHHHcCCccc-CHHHHhccCCEEEEecCCCccccccccHhHhccCCCceEEEEccCCccccHHHHHHhHhcCC
Q 007512 227 DPYAPADRARAIGVDLV-SFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVIDEEALVRALDSGR 305 (600)
Q Consensus 227 d~~~~~~~a~~~g~~~~-~l~ell~~aDvV~l~~Pl~~~t~~li~~~~l~~mk~gailvNvarg~ivde~aL~~aL~~g~ 305 (600)
||+...-.-+.+|...+ ++++++.++|.+++||-+++.+.++++.-.+.+|+.|+.++|++||+++|+.+|.++|++|+
T Consensus 208 dp~~~~g~~~~lg~~rVytlqd~~~~sd~~S~hc~~~~~~h~lin~~tikqm~qGaflvnta~gglvdekaLaqaLk~G~ 287 (435)
T KOG0067|consen 208 DPYLIDGIDKSLGLQRVYTLQDLLYQSDCVSLHCNLNEHNHELINDFTIKQMRQGAFLVNTARGGLVDEKALAQALKSGR 287 (435)
T ss_pred cchhhhhhhhhcccceecccchhhhhccceeeecccCcccccccccccceeecccceEeeecccccCChHHHHhhhccCc
Confidence 99986555566777654 79999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEeccCCCCC-CCCCccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCC---cccc
Q 007512 306 VAQAALDVFTEEPP-PADSKLVQHERVTVTPHLGASTMEAQEGVAIEIAEAVVGALKGELAA---TAVN 370 (600)
Q Consensus 306 i~ga~lDv~~~EP~-~~~~~L~~~~nvilTPH~~~~t~ea~~~~~~~~~~~l~~~l~g~~~~---~~vn 370 (600)
+.|++ |. -...||.+.||.++|||.++++..+..++....+..+...+.|..+. +.||
T Consensus 288 i~~aa-------~~~~~~~~l~d~pn~ic~~~ta~~~e~~~~e~re~aa~eiR~ai~g~ip~~l~~cvn 349 (435)
T KOG0067|consen 288 IRGAA-------PRSFKQGPLKDAPNLICTPHTAWYSEAASVELREVAALEIRRAITGRIPDSLRNCVN 349 (435)
T ss_pred eeccc-------CcccccccccCCCCCCCCcccchhhHHHHHHHHHHHhhhhhhccCCCCchhHHHHHh
Confidence 99887 11 13468889999999999999999998888888889999888886553 4455
|
|
| >PRK06545 prephenate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.4e-26 Score=243.06 Aligned_cols=331 Identities=20% Similarity=0.203 Sum_probs=235.8
Q ss_pred CEEEEEecChhHHHHHHHhhcCCCEEEEECCCCCh-hHHHHcCCc-----ccCHHHHhccCCEEEEecCCCccccccccH
Q 007512 198 KTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPA-DRARAIGVD-----LVSFDEAIATADFISLHMPLTPATSKVLND 271 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~~-~~a~~~g~~-----~~~l~ell~~aDvV~l~~Pl~~~t~~li~~ 271 (600)
++|+|||+|+||+++|+.++..|++|.+|+++... ..+...+.. ..++++++++||+|++|+|. ..+..++.+
T Consensus 1 ~~I~iIG~GliG~siA~~L~~~G~~v~i~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~aDlVilavP~-~~~~~vl~~ 79 (359)
T PRK06545 1 RTVLIVGLGLIGGSLALAIKAAGPDVFIIGYDPSAAQLARALGFGVIDELAADLQRAAAEADLIVLAVPV-DATAALLAE 79 (359)
T ss_pred CeEEEEEeCHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHhcCCCCcccccCHHHHhcCCCEEEEeCCH-HHHHHHHHH
Confidence 47999999999999999999999887777765532 222233332 23678889999999999995 456666633
Q ss_pred hHhc-cCCCceEEEEccCCccccHHHHHHhHhcC--CceE---EEEeccCCCCCCCCCccccCCcEEEcCCCCCCcHHHH
Q 007512 272 ETFG-KMKKGVRIINVARGGVIDEEALVRALDSG--RVAQ---AALDVFTEEPPPADSKLVQHERVTVTPHLGASTMEAQ 345 (600)
Q Consensus 272 ~~l~-~mk~gailvNvarg~ivde~aL~~aL~~g--~i~g---a~lDv~~~EP~~~~~~L~~~~nvilTPH~~~~t~ea~ 345 (600)
... .++++++|+|+++.+.-..+++.+.+..+ ++++ +|.+..+.+ .+...||++.++++||+-... .+.
T Consensus 80 -l~~~~l~~~~ivtDv~SvK~~i~~~~~~~~~~~~~~ig~HPMaG~e~sG~~--aa~~~lf~g~~~il~~~~~~~-~~~- 154 (359)
T PRK06545 80 -LADLELKPGVIVTDVGSVKGAILAEAEALLGDLIRFVGGHPMAGSHKSGVA--AARADLFENAPWVLTPDDHTD-PDA- 154 (359)
T ss_pred -HhhcCCCCCcEEEeCccccHHHHHHHHHhcCCCCeEEeeCCcCcCchhhHH--HhcHHHHCCCcEEEecCCCCC-HHH-
Confidence 233 47899999999987654344443332221 2222 222222222 334679999999999975433 222
Q ss_pred HHHHHHHHHHHHHHHcCCCCCccccCCCCChhhhhccc--chHHH---HHHHH---HHHHHHhcCCCCceEEEEEEeecC
Q 007512 346 EGVAIEIAEAVVGALKGELAATAVNAPMVPAEVLTELK--PFVEL---AEKLG---RLAVQLVAGGSGVKTVKVSYASSR 417 (600)
Q Consensus 346 ~~~~~~~~~~l~~~l~g~~~~~~vn~~~i~~~~~~~~~--p~~~l---a~~lG---~l~~qL~~g~~~~k~v~i~~~Gs~ 417 (600)
.+.+.++++..+.......+..++..+..++ ||+.. +..++ ..+.+|+++ +|+++++.+.+++
T Consensus 155 -------~~~v~~l~~~lGa~~v~~~~~~HD~~~A~vshlPh~ia~al~~~~~~~~~~~~~la~~--gfrd~tRia~~~p 225 (359)
T PRK06545 155 -------VAELKDLLSGTGAKFVVLDAEEHDRAVALVSHLPHILASSLAARLAGEHPLALRLAAG--GFRDITRIASSDP 225 (359)
T ss_pred -------HHHHHHHHHHcCCEEEECCHHHHhHHHhHhccHHHHHHHHHHHhhccCchHHHhhhcc--cccCCccccCCCH
Confidence 2455556655555554455666777777777 77643 33332 245788888 9999999999999
Q ss_pred CCCccccccccHHHHHhhchhhhccchhhccHHHHHhhcCceEEEEEeecCCCCCCCCceEEEEEeecccccccccCCCc
Q 007512 418 APDDLDTRLLRAMITKGLIEPISDVFVNLVNADYTAKQRGLRLTEERILLDGSPESPLEFIQVQIANVESKFASAISESG 497 (600)
Q Consensus 418 a~~~~~~~~~~~a~l~GlL~~~~~~~vn~vnA~~~A~e~GI~v~~~~~~~~~~~~~~~n~i~v~~~~~~~~~~~~~~~~~ 497 (600)
. +|.++...|+..+...|+.+..+...+.++..-.+...|.-.|+..+ .+++.+...-.
T Consensus 226 ~-~w~di~~~N~~~~~~~l~~~~~~l~~~~~~l~~~d~~~l~~~~~~~~------~~r~~~~~~~~-------------- 284 (359)
T PRK06545 226 G-MWRDILESNAEALLDALDEWIEDLDRARDALESGDAEAIAELFDAGK------AGRDRLPGKHG-------------- 284 (359)
T ss_pred H-HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH------HHHHhCccccC--------------
Confidence 8 99999999999999999999988778888887666666666665543 34444332211
Q ss_pred EEEEEEEEeCCceEEEEEcceEEEeecCccEEEEEecCCCCChhhHHhhhhcCCccccceEeeeecCCCcEEEEEEeCCC
Q 007512 498 EIKVEGRVKDGVPHLTKVGSFEVDVSLEGSIILCRQVDQPGMIGTVGSILGSENVNVSFMSVGRVAPRKHAVMAIGVDEQ 577 (600)
Q Consensus 498 ~~~v~Gsv~gG~~~I~~Idgf~v~~~g~~~~Liv~~~D~pG~Ia~V~~iL~~~~INIa~m~v~R~~~g~~al~~i~~D~~ 577 (600)
| ..+.++.++|..+|+||.|+.|+++|+++||||.++++.+.+++..+++.|.+++.
T Consensus 285 -----~------------------~~~~~~~~~v~v~d~pg~~~~~~~~~~~~~i~i~~~~i~~~~~~~~g~~~~~~~~~ 341 (359)
T PRK06545 285 -----G------------------AIPSFYDLYVDVPDEPGVIARVTAILGEEGISIENLRILEAREDIHGVLQISFKNE 341 (359)
T ss_pred -----C------------------CCCcceEEEEeCCCCCCHHHHHHHHHHHcCCCeecceeeeccCCcCceEEEEeCCH
Confidence 1 23458999999999999999999999999999999999999888889999999988
Q ss_pred CcHHHHHHHh
Q 007512 578 PRKETLKKIG 587 (600)
Q Consensus 578 ~~~~~l~~l~ 587 (600)
.+.+...++.
T Consensus 342 ~~~~~~~~~~ 351 (359)
T PRK06545 342 EDRERAKALL 351 (359)
T ss_pred HHHHHHHHHH
Confidence 7776655554
|
|
| >PRK08818 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.8e-23 Score=218.25 Aligned_cols=318 Identities=15% Similarity=0.160 Sum_probs=220.0
Q ss_pred cCCEEEEEec-ChhHHHHHHHhhc-CCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEecCCCccccccccHh-
Q 007512 196 VGKTLAVLGF-GKVGSEVARRAKG-LGMHVIAHDPYAPADRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVLNDE- 272 (600)
Q Consensus 196 ~gktiGIIGl-G~IG~~vA~~l~~-~g~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Pl~~~t~~li~~~- 272 (600)
.-.||+|||+ |+||+++|+.++. ++.+|++||+... ...++++.+++||+|++|+|.. .+..++.+-
T Consensus 3 ~~~~I~IIGl~GliGgslA~alk~~~~~~V~g~D~~d~---------~~~~~~~~v~~aDlVilavPv~-~~~~~l~~l~ 72 (370)
T PRK08818 3 AQPVVGIVGSAGAYGRWLARFLRTRMQLEVIGHDPADP---------GSLDPATLLQRADVLIFSAPIR-HTAALIEEYV 72 (370)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhcCCCEEEEEcCCcc---------ccCCHHHHhcCCCEEEEeCCHH-HHHHHHHHHh
Confidence 4579999999 9999999999995 5999999998421 1235788899999999999954 355555332
Q ss_pred Hh-ccCCCceEEEEccCCccccHHHHHHhHhcCCceEEEEeccCCCCCCC--CCccccCCcEEEcCCCCCCcHHHHHHHH
Q 007512 273 TF-GKMKKGVRIINVARGGVIDEEALVRALDSGRVAQAALDVFTEEPPPA--DSKLVQHERVTVTPHLGASTMEAQEGVA 349 (600)
Q Consensus 273 ~l-~~mk~gailvNvarg~ivde~aL~~aL~~g~i~ga~lDv~~~EP~~~--~~~L~~~~nvilTPH~~~~t~ea~~~~~ 349 (600)
.+ ..+|++++|+|+++-+---.+++.. .. .. +-+.-|... .+.+|++.+|++||.- ..+.
T Consensus 73 ~~~~~l~~~~iVtDVgSvK~~i~~~~~~-~~-~~-------fVG~HPMaG~E~s~lf~g~~~iltp~~---~~~~----- 135 (370)
T PRK08818 73 ALAGGRAAGQLWLDVTSIKQAPVAAMLA-SQ-AE-------VVGLHPMTAPPKSPTLKGRVMVVCEAR---LQHW----- 135 (370)
T ss_pred hhhcCCCCCeEEEECCCCcHHHHHHHHh-cC-CC-------EEeeCCCCCCCCCcccCCCeEEEeCCC---chhH-----
Confidence 11 2479999999999866422233321 11 11 223344421 2468999999999962 1111
Q ss_pred HHHHHHHHHHHcCCCCCccccCCCCChhhhhccc--ch---HHHHHHHH-------HHHH--HHhcCCCCce----EEEE
Q 007512 350 IEIAEAVVGALKGELAATAVNAPMVPAEVLTELK--PF---VELAEKLG-------RLAV--QLVAGGSGVK----TVKV 411 (600)
Q Consensus 350 ~~~~~~l~~~l~g~~~~~~vn~~~i~~~~~~~~~--p~---~~la~~lG-------~l~~--qL~~g~~~~k----~v~i 411 (600)
.+.+.++++..+.......|..|+..+..++ || +.++..+. .+.. .+.++ +|+ .+++
T Consensus 136 ---~~~v~~l~~~~Ga~v~~~~aeeHD~~~A~vS~LsHl~~l~~~~~~~~~~~~~~~~~~~~~f~~~--gFr~d~t~iTR 210 (370)
T PRK08818 136 ---SPWVQSLCSALQAECVYATPEHHDRVMALVQAMVHATHLAQAGVLRDYAPLLGELRALMPYRSA--SFELDTAVIAR 210 (370)
T ss_pred ---HHHHHHHHHHcCCEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhhhhccccch--hhHHHhhhcch
Confidence 2345566666667777788889999999998 55 44443331 1111 34444 677 6689
Q ss_pred EEeecCCCCccccccccHHHHHhhchhhhccchhhccHHHHHhhcCceEE---EEEeecCCCCCCC-CceEE-----EEE
Q 007512 412 SYASSRAPDDLDTRLLRAMITKGLIEPISDVFVNLVNADYTAKQRGLRLT---EERILLDGSPESP-LEFIQ-----VQI 482 (600)
Q Consensus 412 ~~~Gs~a~~~~~~~~~~~a~l~GlL~~~~~~~vn~vnA~~~A~e~GI~v~---~~~~~~~~~~~~~-~n~i~-----v~~ 482 (600)
++++++. ||.+++..|+ .+...|+.+......+.++..--+..+|.-. |..++.. .+ ++.++ .+-
T Consensus 211 IAss~P~-mW~dI~~~N~-~i~~~l~~~~~~L~~l~~~i~~~D~~~~~~~~~~f~~a~~~----~~~r~~~~~~~~~~~~ 284 (370)
T PRK08818 211 ILSLNPS-IYEDIQFGNP-YVGEMLDRLLAQLQELRALVAQGDDAARARFRAQFLHANAQ----ALQEDALAAGNYTYER 284 (370)
T ss_pred hhcCCHH-HHHHHHHhCH-HHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhh----hcchhhCCcccccccc
Confidence 9999998 9999999999 7778888888877788888776666666555 5544310 14 45444 221
Q ss_pred eecccccccccCCCcEEEEEEEEeCCceEEEEEcceEEEeecCccEEEEEec-CCCCChhhHHhhhhcCCccccceEeee
Q 007512 483 ANVESKFASAISESGEIKVEGRVKDGVPHLTKVGSFEVDVSLEGSIILCRQV-DQPGMIGTVGSILGSENVNVSFMSVGR 561 (600)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~v~Gsv~gG~~~I~~Idgf~v~~~g~~~~Liv~~~-D~pG~Ia~V~~iL~~~~INIa~m~v~R 561 (600)
+ |.+.+ |+ -+.+.|++.-+ |+||.|+.|.++|++++|||.++++.+
T Consensus 285 ~-------------------g~~~~-------------~~-~~~~~l~~~v~~d~pG~L~~vl~~la~~~INit~Ies~~ 331 (370)
T PRK08818 285 V-------------------GYLLA-------------DL-TEPLTLSVYLPEDRPGSLRTLLHVFEQHGVNLSSIHSSR 331 (370)
T ss_pred c-------------------ccccC-------------CC-CcceEEEEECCCCCCChHHHHHHHHHHcCcccceEEEec
Confidence 1 22221 00 04788888885 999999999999999999999999988
Q ss_pred ecCCCcEEEEEEeCCCCcHHHHHH
Q 007512 562 VAPRKHAVMAIGVDEQPRKETLKK 585 (600)
Q Consensus 562 ~~~g~~al~~i~~D~~~~~~~l~~ 585 (600)
.++++.. ..|++....+...+.+
T Consensus 332 ~r~~~y~-f~i~~~~~~~~~~~~~ 354 (370)
T PRK08818 332 TPAGELH-FRIGFEPGSDRAALAR 354 (370)
T ss_pred ccCceEE-EEEEEeccccHHHHHH
Confidence 8888877 8889888766655544
|
|
| >PF00389 2-Hacid_dh: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; InterPro: IPR006139 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related | Back alignment and domain information |
|---|
Probab=99.86 E-value=7.6e-21 Score=175.13 Aligned_cols=101 Identities=40% Similarity=0.558 Sum_probs=91.4
Q ss_pred EEEecCCCHhHHHHhcccCcEEEccCCCHhHHhhhcCCceEEEEcCCCCCCHHHHhccCCCceEEEEcCcccCccChhHH
Q 007512 61 VLIAEKLGQAGLDLLNEFANVDCAYNLSPEELCTKISLCDALIVRSGTKVNRDVFESSAGRLKVVGRAGVGIDNVDLAAA 140 (600)
Q Consensus 61 ilv~~~l~~~~~~~l~~~~~v~~~~~~~~~el~~~i~~~d~li~~~~~~~~~~~l~~~~~~Lk~I~~~g~G~d~iD~~aa 140 (600)
||++++++++.+++|++..++.+....+.+++.+.++++|++++++.+++++++++++ |+||||++.|+|+||||+++|
T Consensus 1 ili~~~~~~~~~~~l~~~~~v~~~~~~~~~~~~~~l~~~d~ii~~~~~~~~~~~l~~~-~~Lk~I~~~~~G~d~id~~~a 79 (133)
T PF00389_consen 1 ILITDPLPDEEIERLEEGFEVEFCDSPSEEELAERLKDADAIIVGSGTPLTAEVLEAA-PNLKLISTAGAGVDNIDLEAA 79 (133)
T ss_dssp EEESSS-SHHHHHHHHHTSEEEEESSSSHHHHHHHHTTESEEEESTTSTBSHHHHHHH-TT-SEEEESSSSCTTB-HHHH
T ss_pred eEEeccCCHHHHHHHHCCceEEEeCCCCHHHHHHHhCCCeEEEEcCCCCcCHHHHhcc-ceeEEEEEcccccCcccHHHH
Confidence 7999999999999999922888888888999999999999999998777999999998 699999999999999999999
Q ss_pred HhCCceeecCCCCChHHHHHHH
Q 007512 141 TEFGCLVVNAPTANTVAAAEHG 162 (600)
Q Consensus 141 ~~~GI~V~n~p~~~~~~vAE~~ 162 (600)
+++||.|+|+||+++.+||||+
T Consensus 80 ~~~gI~V~n~~g~~~~aVAE~a 101 (133)
T PF00389_consen 80 KERGIPVTNVPGYNAEAVAEHA 101 (133)
T ss_dssp HHTTSEEEE-TTTTHHHHHHHH
T ss_pred hhCeEEEEEeCCcCCcchhccc
Confidence 9999999999999999999999
|
The catalytic domain contains a number of conserved charged residues which may play a role in the catalytic mechanism. The NAD-binding domain is described in IPR006140 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 2DLD_A 2G76_B 3DC2_B 1YGY_B 3DDN_A 3KB6_B 3K5P_A 3EVT_A 1WWK_B 1GDH_A .... |
| >PTZ00075 Adenosylhomocysteinase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.2e-20 Score=201.47 Aligned_cols=170 Identities=20% Similarity=0.307 Sum_probs=140.6
Q ss_pred EcCcccCccC-hhHHHhCCceeecCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCccccccccceeccCCEEEEEec
Q 007512 127 RAGVGIDNVD-LAAATEFGCLVVNAPTANTVAAAEHGIALLAAMARNVAQADASVKAGKWQRNKYVGVSLVGKTLAVLGF 205 (600)
Q Consensus 127 ~~g~G~d~iD-~~aa~~~GI~V~n~p~~~~~~vAE~~l~lll~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktiGIIGl 205 (600)
-.++|+..+- ++..-+-||+|+|+|++++.+++|+++++++++.. ..+|.+ +..+.||+++|+|+
T Consensus 197 eTttGv~rl~~m~~~g~L~iPV~nv~d~~tk~~aD~~~G~~~s~~d------~~~R~~--------~~~LaGKtVgVIG~ 262 (476)
T PTZ00075 197 ETTTGVHRLYKMLKKGELLFPAINVNDSVTKSKFDNIYGCRHSLID------GIFRAT--------DVMIAGKTVVVCGY 262 (476)
T ss_pred cchHHHHHHHHHHHCCCCCceEEEeCCcchHHHHHHHHHHHHHHHH------HHHHhc--------CCCcCCCEEEEECC
Confidence 3678887652 33334468999999999999999999999998883 333333 46899999999999
Q ss_pred ChhHHHHHHHhhcCCCEEEEECCCCC-hhHHHHcCCcccCHHHHhccCCEEEEecCCCccccccccHhHhccCCCceEEE
Q 007512 206 GKVGSEVARRAKGLGMHVIAHDPYAP-ADRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRII 284 (600)
Q Consensus 206 G~IG~~vA~~l~~~g~~V~~~d~~~~-~~~a~~~g~~~~~l~ell~~aDvV~l~~Pl~~~t~~li~~~~l~~mk~gailv 284 (600)
|.||+.+|+++++|||+|+++++++. ...+...|+..+++++++++||+|++|+ .++++|+.+.|+.||+|++|+
T Consensus 263 G~IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A~~~G~~~~~leell~~ADIVI~at----Gt~~iI~~e~~~~MKpGAiLI 338 (476)
T PTZ00075 263 GDVGKGCAQALRGFGARVVVTEIDPICALQAAMEGYQVVTLEDVVETADIFVTAT----GNKDIITLEHMRRMKNNAIVG 338 (476)
T ss_pred CHHHHHHHHHHHHCCCEEEEEeCCchhHHHHHhcCceeccHHHHHhcCCEEEECC----CcccccCHHHHhccCCCcEEE
Confidence 99999999999999999999976652 2245557888889999999999999985 378899999999999999999
Q ss_pred EccCCccccHHHHHHhHhcCCceEEEEeccCCCCCCC
Q 007512 285 NVARGGVIDEEALVRALDSGRVAQAALDVFTEEPPPA 321 (600)
Q Consensus 285 Nvarg~ivde~aL~~aL~~g~i~ga~lDv~~~EP~~~ 321 (600)
|+||+ |++.+.++|+.+. ++|+++.+|...
T Consensus 339 NvGr~---d~Ei~i~aL~~~~----~vdv~evep~v~ 368 (476)
T PTZ00075 339 NIGHF---DNEIQVAELEAYP----GIEIVEIKPQVD 368 (476)
T ss_pred EcCCC---chHHhHHHHHhcC----CceeecccCCCC
Confidence 99999 6777777887643 789999998753
|
|
| >TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.2e-18 Score=180.78 Aligned_cols=151 Identities=25% Similarity=0.387 Sum_probs=127.0
Q ss_pred CCCHHHHhccCCCceEEEEcCcccCccChh-HHHhCCceee------cCCCCChHHHHHHHHHHHHHHHhchHHHHHHHH
Q 007512 109 KVNRDVFESSAGRLKVVGRAGVGIDNVDLA-AATEFGCLVV------NAPTANTVAAAEHGIALLAAMARNVAQADASVK 181 (600)
Q Consensus 109 ~~~~~~l~~~~~~Lk~I~~~g~G~d~iD~~-aa~~~GI~V~------n~p~~~~~~vAE~~l~lll~~~R~i~~~~~~~~ 181 (600)
+++++++++++ .++...+|++|.|++ +|+++||.|+ |++.+|+.++||+++.+++..
T Consensus 81 ~l~~~~l~~~~----~~~~~~~G~~~~~l~~~a~~~gi~v~~~~~~~~va~~n~~~~Ae~ai~~al~~------------ 144 (287)
T TIGR02853 81 VLTPELLESTK----GHCTIYVGISNPYLEQLAADAGVKLIELFERDDVAIYNSIPTAEGAIMMAIEH------------ 144 (287)
T ss_pred cccHHHHHhcC----CCCEEEEecCCHHHHHHHHHCCCeEEEEEeccceEEEccHhHHHHHHHHHHHh------------
Confidence 46788888763 366788889999998 9999999999 999999999999999877732
Q ss_pred cCccccccccceeccCCEEEEEecChhHHHHHHHhhcCCCEEEEECCCC-ChhHHHHcCCccc---CHHHHhccCCEEEE
Q 007512 182 AGKWQRNKYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYA-PADRARAIGVDLV---SFDEAIATADFISL 257 (600)
Q Consensus 182 ~g~W~~~~~~g~~l~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~-~~~~a~~~g~~~~---~l~ell~~aDvV~l 257 (600)
.+.+++|++++|+|+|.||+.+|++|+++|++|.+++++. ....+.+.|.... +++++++++|+|++
T Consensus 145 ---------~~~~l~gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~~~~~~~~~~g~~~~~~~~l~~~l~~aDiVin 215 (287)
T TIGR02853 145 ---------TDFTIHGSNVMVLGFGRTGMTIARTFSALGARVFVGARSSADLARITEMGLIPFPLNKLEEKVAEIDIVIN 215 (287)
T ss_pred ---------cCCCCCCCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCeeecHHHHHHHhccCCEEEE
Confidence 2458899999999999999999999999999999999876 2334445565433 57788999999999
Q ss_pred ecCCCccccccccHhHhccCCCceEEEEccCC
Q 007512 258 HMPLTPATSKVLNDETFGKMKKGVRIINVARG 289 (600)
Q Consensus 258 ~~Pl~~~t~~li~~~~l~~mk~gailvNvarg 289 (600)
|+|.. +++++.++.||+++++||++..
T Consensus 216 t~P~~-----ii~~~~l~~~k~~aliIDlas~ 242 (287)
T TIGR02853 216 TIPAL-----VLTADVLSKLPKHAVIIDLASK 242 (287)
T ss_pred CCChH-----HhCHHHHhcCCCCeEEEEeCcC
Confidence 99954 6788899999999999999973
|
This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA. |
| >PRK07417 arogenate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=99.68 E-value=5.9e-17 Score=167.67 Aligned_cols=246 Identities=11% Similarity=0.080 Sum_probs=165.4
Q ss_pred CEEEEEecChhHHHHHHHhhcCCCEEEEECCCC-ChhHHHHcCCc--ccCHHHHhccCCEEEEecCCCccccccccHhHh
Q 007512 198 KTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYA-PADRARAIGVD--LVSFDEAIATADFISLHMPLTPATSKVLNDETF 274 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~-~~~~a~~~g~~--~~~l~ell~~aDvV~l~~Pl~~~t~~li~~~~l 274 (600)
++|||||+|.||+++|+.|+..|++|.+||++. ..+.+.+.|.. ..+..+.+++||+|++|+|... ...++ ++..
T Consensus 1 m~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~~~~~~a~~~g~~~~~~~~~~~~~~aDlVilavp~~~-~~~~~-~~l~ 78 (279)
T PRK07417 1 MKIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRESTCERAIERGLVDEASTDLSLLKDCDLVILALPIGL-LLPPS-EQLI 78 (279)
T ss_pred CeEEEEeecHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCcccccCCHhHhcCCCEEEEcCCHHH-HHHHH-HHHH
Confidence 379999999999999999998899999999876 34555666642 2222356899999999999443 33433 4455
Q ss_pred ccCCCceEEEEccCCccccHHHHHHhHhcCCceEEEEe-ccCCCC---CCCCCccccCCcEEEcCCCCCCcHHHHHHHHH
Q 007512 275 GKMKKGVRIINVARGGVIDEEALVRALDSGRVAQAALD-VFTEEP---PPADSKLVQHERVTVTPHLGASTMEAQEGVAI 350 (600)
Q Consensus 275 ~~mk~gailvNvarg~ivde~aL~~aL~~g~i~ga~lD-v~~~EP---~~~~~~L~~~~nvilTPH~~~~t~ea~~~~~~ 350 (600)
..++++++++|+++.+.-..+++.+. ....++ .+ .++.|. ..+...||..+++++||+-.+. .+.
T Consensus 79 ~~l~~~~ii~d~~Svk~~~~~~~~~~-~~~~v~---~HPm~G~~~~g~~~a~~~lf~g~~~~l~p~~~~~-~~~------ 147 (279)
T PRK07417 79 PALPPEAIVTDVGSVKAPIVEAWEKL-HPRFVG---SHPMAGTAESGVEAGQRGLFKNRPWVLTPTENTD-LNA------ 147 (279)
T ss_pred HhCCCCcEEEeCcchHHHHHHHHHHh-hCCcee---eCCcCCCCcchHHHhhHHHhCCCcEEEccCCCCC-HHH------
Confidence 66899999999987654333333221 122222 11 122221 0223458889999999986443 332
Q ss_pred HHHHHHHHHHcCCCCCccccCCCCChhhhhccc--chHHHHHHHHHHH-----------HHHhcCCCCceEEEEEEeecC
Q 007512 351 EIAEAVVGALKGELAATAVNAPMVPAEVLTELK--PFVELAEKLGRLA-----------VQLVAGGSGVKTVKVSYASSR 417 (600)
Q Consensus 351 ~~~~~l~~~l~g~~~~~~vn~~~i~~~~~~~~~--p~~~la~~lG~l~-----------~qL~~g~~~~k~v~i~~~Gs~ 417 (600)
.+.+..+++..+.......+.-++..+..++ |++.....+..+. ..+++| +||++|+++.+++
T Consensus 148 --~~~v~~l~~~lG~~~v~~~~~~hD~~~a~~shlp~~~a~~l~~~~~~~~~~~~~~~~~~~~~~--gfrd~tRia~~~p 223 (279)
T PRK07417 148 --LAIVEELAVSLGSKIYTADPEEHDRAVALISHLPVMVSAALIQTCGTEKDPSVLKLAQNLASS--GFADTSRVGGGNP 223 (279)
T ss_pred --HHHHHHHHHHcCCEEEEcCHHHHHHHHHHHcchHHHHHHHHHHHHhhcccchhhHHhhhhccC--cccccccccCCCh
Confidence 2344444544444444455667777777776 7776655544432 357777 8999999999999
Q ss_pred CCCccccccccHHHHHhhchhhhccchhhccHHHHHhhcCceEE
Q 007512 418 APDDLDTRLLRAMITKGLIEPISDVFVNLVNADYTAKQRGLRLT 461 (600)
Q Consensus 418 a~~~~~~~~~~~a~l~GlL~~~~~~~vn~vnA~~~A~e~GI~v~ 461 (600)
. +|.++...|+..+...|+.+..+...+.++..--++.++.-.
T Consensus 224 ~-~w~~i~~~N~~~i~~~l~~~~~~l~~~~~~l~~~d~~~l~~~ 266 (279)
T PRK07417 224 E-LGVMMAEYNRAALLRSLASYRQSLDQLEELIEQENWSALEQK 266 (279)
T ss_pred H-HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 8 999999999988878888888876777777765555555433
|
|
| >COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.5e-15 Score=156.65 Aligned_cols=225 Identities=25% Similarity=0.287 Sum_probs=164.3
Q ss_pred CCEEEEEecChhHHHHHHHhhcCCCEE--EEECCCC-ChhHHHHcCCcc---cCH-HHHhccCCEEEEecCCCccccccc
Q 007512 197 GKTLAVLGFGKVGSEVARRAKGLGMHV--IAHDPYA-PADRARAIGVDL---VSF-DEAIATADFISLHMPLTPATSKVL 269 (600)
Q Consensus 197 gktiGIIGlG~IG~~vA~~l~~~g~~V--~~~d~~~-~~~~a~~~g~~~---~~l-~ell~~aDvV~l~~Pl~~~t~~li 269 (600)
-++|+|+|+|.||+++|+.++..|..+ +++|++. ..+.+.+.|+.. .+. .+....||+|++++|.. .|..++
T Consensus 3 ~~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~lgv~d~~~~~~~~~~~~~aD~VivavPi~-~~~~~l 81 (279)
T COG0287 3 SMKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALELGVIDELTVAGLAEAAAEADLVIVAVPIE-ATEEVL 81 (279)
T ss_pred CcEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhcCcccccccchhhhhcccCCEEEEeccHH-HHHHHH
Confidence 468999999999999999999888765 6667665 445566677632 233 67788899999999944 466665
Q ss_pred cHhHhccCCCceEEEEccCCccccHHHHHHhHhcC-CceEEEEeccCCCCCC---CCCccccCCcEEEcCCCCCCcHHHH
Q 007512 270 NDETFGKMKKGVRIINVARGGVIDEEALVRALDSG-RVAQAALDVFTEEPPP---ADSKLVQHERVTVTPHLGASTMEAQ 345 (600)
Q Consensus 270 ~~~~l~~mk~gailvNvarg~ivde~aL~~aL~~g-~i~ga~lDv~~~EP~~---~~~~L~~~~nvilTPH~~~~t~ea~ 345 (600)
. +....+|+|++|+|+++-+--..+++.+.+.+. ++ -+.-|.. ++.+||++..||+||.-...
T Consensus 82 ~-~l~~~l~~g~iv~Dv~S~K~~v~~a~~~~~~~~~~~-------vg~HPM~G~~~~~~lf~~~~~vltp~~~~~----- 148 (279)
T COG0287 82 K-ELAPHLKKGAIVTDVGSVKSSVVEAMEKYLPGDVRF-------VGGHPMFGPEADAGLFENAVVVLTPSEGTE----- 148 (279)
T ss_pred H-HhcccCCCCCEEEecccccHHHHHHHHHhccCCCee-------EecCCCCCCcccccccCCCEEEEcCCCCCC-----
Confidence 3 333379999999999986654455555444332 22 2223332 35789999999999964322
Q ss_pred HHHHHHHHHHHHHHHcCCCCCccccCCCCChhhhhccc--chHHHHHHHH---H------HHHHHhcCCCCceEEEEEEe
Q 007512 346 EGVAIEIAEAVVGALKGELAATAVNAPMVPAEVLTELK--PFVELAEKLG---R------LAVQLVAGGSGVKTVKVSYA 414 (600)
Q Consensus 346 ~~~~~~~~~~l~~~l~g~~~~~~vn~~~i~~~~~~~~~--p~~~la~~lG---~------l~~qL~~g~~~~k~v~i~~~ 414 (600)
.+.++++.+++.+.+.+.....|..|+..+..++ ||+......+ . ++..+++| +|+++++++.
T Consensus 149 ----~~~~~~~~~~~~~~ga~~v~~~~eeHD~~~a~vshLpH~~a~al~~~~~~~~~~~~~~~~~as~--~frd~tRia~ 222 (279)
T COG0287 149 ----KEWVEEVKRLWEALGARLVEMDAEEHDRVMAAVSHLPHAAALALANALAKLETEELLVLKLASG--GFRDITRIAS 222 (279)
T ss_pred ----HHHHHHHHHHHHHcCCEEEEcChHHHhHHHHHHHHHHHHHHHHHHHHHHhcCcchhHHHhcccc--chhhHHHHHc
Confidence 3345788899998888888889999999999998 7764433332 2 24567777 8999999999
Q ss_pred ecCCCCccccccccHHHHHhhchhhhcc
Q 007512 415 SSRAPDDLDTRLLRAMITKGLIEPISDV 442 (600)
Q Consensus 415 Gs~a~~~~~~~~~~~a~l~GlL~~~~~~ 442 (600)
+++. +|.+++..|...+...++.+..+
T Consensus 223 ~~P~-m~~dI~~~N~~~~l~~i~~~~~~ 249 (279)
T COG0287 223 SDPE-MYADIQLSNKEALLEAIERFAKS 249 (279)
T ss_pred CChH-HHHHHHHhCcHHHHHHHHHHHHH
Confidence 9998 99999999999655556565554
|
|
| >PRK07502 cyclohexadienyl dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.4e-15 Score=159.40 Aligned_cols=253 Identities=21% Similarity=0.215 Sum_probs=169.3
Q ss_pred CCEEEEEecChhHHHHHHHhhcCC--CEEEEECCCC-ChhHHHHcCCc---ccCHHHHhccCCEEEEecCCCcccccccc
Q 007512 197 GKTLAVLGFGKVGSEVARRAKGLG--MHVIAHDPYA-PADRARAIGVD---LVSFDEAIATADFISLHMPLTPATSKVLN 270 (600)
Q Consensus 197 gktiGIIGlG~IG~~vA~~l~~~g--~~V~~~d~~~-~~~~a~~~g~~---~~~l~ell~~aDvV~l~~Pl~~~t~~li~ 270 (600)
.++|+|||+|.||+++|+.++..| .+|++||++. ..+.+.+.|+. ..++++.+++||+|++|+|.. .+..++
T Consensus 6 ~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvViiavp~~-~~~~v~- 83 (307)
T PRK07502 6 FDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARELGLGDRVTTSAAEAVKGADLVILCVPVG-ASGAVA- 83 (307)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCCCCceecCCHHHHhcCCCEEEECCCHH-HHHHHH-
Confidence 468999999999999999999777 4899999976 34555666642 236788899999999999953 233333
Q ss_pred HhHhccCCCceEEEEccCCccccHHHHHHhHhcC-CceEEEEeccCCC---CCCCCCccccCCcEEEcCCCCCCcHHHHH
Q 007512 271 DETFGKMKKGVRIINVARGGVIDEEALVRALDSG-RVAQAALDVFTEE---PPPADSKLVQHERVTVTPHLGASTMEAQE 346 (600)
Q Consensus 271 ~~~l~~mk~gailvNvarg~ivde~aL~~aL~~g-~i~ga~lDv~~~E---P~~~~~~L~~~~nvilTPH~~~~t~ea~~ 346 (600)
+.....++++.+++|++..+.-..+++.+.+..+ ++.++ -=+++.| |..+...|+...++++||+.++. .++.
T Consensus 84 ~~l~~~l~~~~iv~dvgs~k~~~~~~~~~~~~~~~~~v~~-hPm~g~e~~G~~~a~~~l~~g~~~~l~~~~~~~-~~~~- 160 (307)
T PRK07502 84 AEIAPHLKPGAIVTDVGSVKASVIAAMAPHLPEGVHFIPG-HPLAGTEHSGPDAGFAELFENRWCILTPPEGTD-PAAV- 160 (307)
T ss_pred HHHHhhCCCCCEEEeCccchHHHHHHHHHhCCCCCeEEeC-CCCCCCcccchhhcCHHHHCCCeEEEeCCCCCC-HHHH-
Confidence 3344568999999999875543334444433332 12111 0112211 11234588999999999976543 3322
Q ss_pred HHHHHHHHHHHHHHcCCCCCccccCCCCChhhhhccc--chHHHHHHHHHH----------HHHHhcCCCCceEEEEEEe
Q 007512 347 GVAIEIAEAVVGALKGELAATAVNAPMVPAEVLTELK--PFVELAEKLGRL----------AVQLVAGGSGVKTVKVSYA 414 (600)
Q Consensus 347 ~~~~~~~~~l~~~l~g~~~~~~vn~~~i~~~~~~~~~--p~~~la~~lG~l----------~~qL~~g~~~~k~v~i~~~ 414 (600)
+.+.++++..+....+..+..++..+..++ ||+.....++.+ ...+.+| +|++.++++.
T Consensus 161 -------~~~~~l~~~lG~~~~~~~~~~hD~~~A~~s~lph~~a~~l~~~~~~~~~~~~~~~~~~~~~--gfrd~tRia~ 231 (307)
T PRK07502 161 -------ARLTAFWRALGARVEEMDPEHHDLVLAITSHLPHLIAYTIVGTADDLERVTESEVIKYSAS--GFRDFTRIAA 231 (307)
T ss_pred -------HHHHHHHHHcCCEEEEcCHHHHhHHHHHHhhHHHHHHHHHHHHHhhhcccchHHHHHhccc--cccccccccc
Confidence 344555555555555556677777777777 776444433322 2356677 8999999999
Q ss_pred ecCCCCccccccccHHHHHhhchhhhccchhhccHHHHHhhcCceEEEEE
Q 007512 415 SSRAPDDLDTRLLRAMITKGLIEPISDVFVNLVNADYTAKQRGLRLTEER 464 (600)
Q Consensus 415 Gs~a~~~~~~~~~~~a~l~GlL~~~~~~~vn~vnA~~~A~e~GI~v~~~~ 464 (600)
+++. +|.++...|+..+...|+.+......+.++..-.++..+.-.|++
T Consensus 232 ~~~~-~w~~i~~~N~~~~~~~l~~~~~~l~~~~~~l~~~d~~~l~~~~~~ 280 (307)
T PRK07502 232 SDPT-MWRDVFLHNKDAVLEMLGRFTEDLAALQRAIRWGDGDALFDLFTR 280 (307)
T ss_pred CChH-HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9998 999999999988777787777776677777765555555444443
|
|
| >PLN02256 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.60 E-value=6.7e-16 Score=161.51 Aligned_cols=236 Identities=14% Similarity=0.101 Sum_probs=162.3
Q ss_pred eccCCEEEEEecChhHHHHHHHhhcCCCEEEEECCCCChhHHHHcCCcc-cCHHHHh-ccCCEEEEecCCCccccccccH
Q 007512 194 SLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPADRARAIGVDL-VSFDEAI-ATADFISLHMPLTPATSKVLND 271 (600)
Q Consensus 194 ~l~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~~~~a~~~g~~~-~~l~ell-~~aDvV~l~~Pl~~~t~~li~~ 271 (600)
+-++++|||||+|.||+++|+.++..|++|++||++...+.+...|+.. .++++++ .+||+|++|+|. ..+..++.+
T Consensus 33 ~~~~~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~~~~~~a~~~gv~~~~~~~e~~~~~aDvVilavp~-~~~~~vl~~ 111 (304)
T PLN02256 33 KSRKLKIGIVGFGNFGQFLAKTFVKQGHTVLATSRSDYSDIAAELGVSFFRDPDDFCEEHPDVVLLCTSI-LSTEAVLRS 111 (304)
T ss_pred cCCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECccHHHHHHHcCCeeeCCHHHHhhCCCCEEEEecCH-HHHHHHHHh
Confidence 3467899999999999999999999999999999886445566677754 3677776 479999999994 456777655
Q ss_pred hHhccCCCceEEEEccCCccccHHHHHHhHhcC-CceE----EEEeccCCCCCCCCCccccCCcEEEcCCC---CCCcHH
Q 007512 272 ETFGKMKKGVRIINVARGGVIDEEALVRALDSG-RVAQ----AALDVFTEEPPPADSKLVQHERVTVTPHL---GASTME 343 (600)
Q Consensus 272 ~~l~~mk~gailvNvarg~ivde~aL~~aL~~g-~i~g----a~lDv~~~EP~~~~~~L~~~~nvilTPH~---~~~t~e 343 (600)
-....++++++|+|+++++-...+++.+.+..+ ++.| +|..+. ...+...+++++|+. .....+
T Consensus 112 l~~~~l~~~~iviDv~SvK~~~~~~~~~~l~~~~~~V~~HPmaG~e~~--------~~~~~~~~~~~~~~~i~~~~~~~~ 183 (304)
T PLN02256 112 LPLQRLKRSTLFVDVLSVKEFPKNLLLQVLPEEFDILCTHPMFGPESG--------KGGWAGLPFVYDKVRIGDEGEREA 183 (304)
T ss_pred hhhhccCCCCEEEecCCchHHHHHHHHHhCCCCCeEEecCCCCCCCCC--------ccccCCCeEEEecceecCCCCCHH
Confidence 435568999999999997655566666666543 2322 333222 123444445555432 222222
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCccccCCCCChhhhhccc--chHHHHHHHHHHH---HHHhcCCCCceEEEEEEe----
Q 007512 344 AQEGVAIEIAEAVVGALKGELAATAVNAPMVPAEVLTELK--PFVELAEKLGRLA---VQLVAGGSGVKTVKVSYA---- 414 (600)
Q Consensus 344 a~~~~~~~~~~~l~~~l~g~~~~~~vn~~~i~~~~~~~~~--p~~~la~~lG~l~---~qL~~g~~~~k~v~i~~~---- 414 (600)
+ .+.+.++++..+.+.....|..|+..+..++ ||+. |..|.... ..+++| +|++.++...
T Consensus 184 ~--------~~~l~~l~~~lGa~v~~~~~eeHD~~vA~iShLpH~l-a~~L~~~~~~~~~~~~~--gfrd~tria~r~~~ 252 (304)
T PLN02256 184 R--------CERFLDIFEEEGCRMVEMSCEEHDRYAAGSQFITHTV-GRILGKMELESTPINTK--GYETLLRLVENTSS 252 (304)
T ss_pred H--------HHHHHHHHHHCCCEEEEeCHHHHhHHHHhhhhHHHHH-HHHHHHcCCcccccccc--cHHHHHHHHHhhcC
Confidence 2 2455666666667777778888888888887 7764 33333222 256667 8999888776
Q ss_pred ecCCCCccccccccHHHHHhhchhhhccchhhccHHH
Q 007512 415 SSRAPDDLDTRLLRAMITKGLIEPISDVFVNLVNADY 451 (600)
Q Consensus 415 Gs~a~~~~~~~~~~~a~l~GlL~~~~~~~vn~vnA~~ 451 (600)
+++. +|.+++..|+..+ ..++.+......+.++..
T Consensus 253 ~~p~-lw~dI~~~N~~~~-~~i~~~~~~l~~~~~~l~ 287 (304)
T PLN02256 253 DSFD-LYYGLFMYNPNAT-EELERLELAFDSVKKQLF 287 (304)
T ss_pred CCHH-HHHHHHHHChHHH-HHHHHHHHHHHHHHHHHH
Confidence 9998 9999999999888 777777766555555443
|
|
| >PRK08306 dipicolinate synthase subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.6e-14 Score=149.11 Aligned_cols=165 Identities=24% Similarity=0.340 Sum_probs=131.8
Q ss_pred hcCCceEEEEcCC----------------CCCCHHHHhccCCCceEEEEcCcccCccChhHHHhCCceeecCCCC-----
Q 007512 95 KISLCDALIVRSG----------------TKVNRDVFESSAGRLKVVGRAGVGIDNVDLAAATEFGCLVVNAPTA----- 153 (600)
Q Consensus 95 ~i~~~d~li~~~~----------------~~~~~~~l~~~~~~Lk~I~~~g~G~d~iD~~aa~~~GI~V~n~p~~----- 153 (600)
.+.++|+++.--. ..++++.++.++ ++..+. .|.+.+++| +.|.++||.+++.+..
T Consensus 52 ~~~~ad~ii~~~p~~~~~~~i~~~~~~~~~~~~~~~l~~l~-~~~~v~-~G~~~~~~~-~~~~~~gi~~~~~~~~~~~~~ 128 (296)
T PRK08306 52 ALSDVDVIILPVPGTNDEGNVDTVFSNEKLVLTEELLELTP-EHCTIF-SGIANPYLK-ELAKETNRKLVELFERDDVAI 128 (296)
T ss_pred HhccCCEEEECCccccCCceeeccccccCCcchHHHHHhcC-CCCEEE-EecCCHHHH-HHHHHCCCeEEEEeccchhhh
Confidence 4688998885411 124678899884 676444 588899988 8899999999998864
Q ss_pred -ChHHHHHHHHHHHHHHHhchHHHHHHHHcCccccccccceeccCCEEEEEecChhHHHHHHHhhcCCCEEEEECCCC-C
Q 007512 154 -NTVAAAEHGIALLAAMARNVAQADASVKAGKWQRNKYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYA-P 231 (600)
Q Consensus 154 -~~~~vAE~~l~lll~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~-~ 231 (600)
|+.++||.++.+.+. ..+.++.|++++|+|+|.+|+.+++.|+++|++|.++|++. .
T Consensus 129 ~ns~~~aegav~~a~~---------------------~~~~~l~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~~ 187 (296)
T PRK08306 129 LNSIPTAEGAIMMAIE---------------------HTPITIHGSNVLVLGFGRTGMTLARTLKALGANVTVGARKSAH 187 (296)
T ss_pred hccHhHHHHHHHHHHH---------------------hCCCCCCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHH
Confidence 888999997765431 12356789999999999999999999999999999999986 3
Q ss_pred hhHHHHcCCccc---CHHHHhccCCEEEEecCCCccccccccHhHhccCCCceEEEEccC
Q 007512 232 ADRARAIGVDLV---SFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVAR 288 (600)
Q Consensus 232 ~~~a~~~g~~~~---~l~ell~~aDvV~l~~Pl~~~t~~li~~~~l~~mk~gailvNvar 288 (600)
.+.+.+.|+... ++.+.++++|+|+.++|. .+++++.++.|++++++||++.
T Consensus 188 ~~~~~~~G~~~~~~~~l~~~l~~aDiVI~t~p~-----~~i~~~~l~~~~~g~vIIDla~ 242 (296)
T PRK08306 188 LARITEMGLSPFHLSELAEEVGKIDIIFNTIPA-----LVLTKEVLSKMPPEALIIDLAS 242 (296)
T ss_pred HHHHHHcCCeeecHHHHHHHhCCCCEEEECCCh-----hhhhHHHHHcCCCCcEEEEEcc
Confidence 455667777654 466889999999999983 4678889999999999999985
|
|
| >PRK08507 prephenate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.58 E-value=3.2e-15 Score=154.37 Aligned_cols=235 Identities=17% Similarity=0.151 Sum_probs=152.2
Q ss_pred CEEEEEecChhHHHHHHHhhcCC--CEEEEECCCC-ChhHHHHcCCc--ccCHHHHhccCCEEEEecCCCccccccccHh
Q 007512 198 KTLAVLGFGKVGSEVARRAKGLG--MHVIAHDPYA-PADRARAIGVD--LVSFDEAIATADFISLHMPLTPATSKVLNDE 272 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~g--~~V~~~d~~~-~~~~a~~~g~~--~~~l~ell~~aDvV~l~~Pl~~~t~~li~~~ 272 (600)
++|+|||+|.||+++|+.|+..| .+|++||++. ..+.+.+.|+. ..+++++. +||+|++|+|.. .+..++ .+
T Consensus 1 m~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~~g~~~~~~~~~~~~-~aD~Vilavp~~-~~~~~~-~~ 77 (275)
T PRK08507 1 MKIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKALELGLVDEIVSFEELK-KCDVIFLAIPVD-AIIEIL-PK 77 (275)
T ss_pred CEEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHCCCCcccCCHHHHh-cCCEEEEeCcHH-HHHHHH-HH
Confidence 37999999999999999999766 4899999876 34455666753 33677765 599999999954 344444 33
Q ss_pred HhccCCCceEEEEccCCccccHHHHHHhHhcCCceE----EEEeccCCCCCCCCCccccCCcEEEcCCCCCCcHHHHHHH
Q 007512 273 TFGKMKKGVRIINVARGGVIDEEALVRALDSGRVAQ----AALDVFTEEPPPADSKLVQHERVTVTPHLGASTMEAQEGV 348 (600)
Q Consensus 273 ~l~~mk~gailvNvarg~ivde~aL~~aL~~g~i~g----a~lDv~~~EP~~~~~~L~~~~nvilTPH~~~~t~ea~~~~ 348 (600)
... ++++++|+|++.-..--.+.+.+. ..+++.+ +|.+.++++ .+...|++...++++|.-++ +.+..
T Consensus 78 l~~-l~~~~iv~d~gs~k~~i~~~~~~~-~~~~~v~~hPmaG~e~~Gp~--~a~~~l~~g~~~il~~~~~~-~~~~~--- 149 (275)
T PRK08507 78 LLD-IKENTTIIDLGSTKAKIIESVPKH-IRKNFIAAHPMAGTENSGPK--AAIKGLYEGKVVVLCDVEKS-GEKHQ--- 149 (275)
T ss_pred Hhc-cCCCCEEEECccchHHHHHHHHHh-cCCCEEecCCcCcCchhhHH--hccHHHhCCCeEEEecCCCC-CHHHH---
Confidence 445 889999999876432222222221 1122222 222222222 33345788888899996432 22222
Q ss_pred HHHHHHHHHHHHcCCCCCccccCCCCChhhhhccc--chHHHHHHHHHHH---------HHHhcCCCCceEEEEEEeecC
Q 007512 349 AIEIAEAVVGALKGELAATAVNAPMVPAEVLTELK--PFVELAEKLGRLA---------VQLVAGGSGVKTVKVSYASSR 417 (600)
Q Consensus 349 ~~~~~~~l~~~l~g~~~~~~vn~~~i~~~~~~~~~--p~~~la~~lG~l~---------~qL~~g~~~~k~v~i~~~Gs~ 417 (600)
+.+..+++..+.......+.-+++.+..++ ||+ ++.-++..+ ..++++ +|++.++++.+++
T Consensus 150 -----~~v~~l~~~~G~~~~~~~~~~hD~~~a~vs~lph~-~a~~l~~~~~~~~~~~~~~~~~~~--gfrd~tria~~~p 221 (275)
T PRK08507 150 -----ERAKEIFSGLGMRIVYMDAKEHDLHAAYISHLPHI-ISFALANTVLKEEDERNIFDLAGG--GFRSMSRLAKSSP 221 (275)
T ss_pred -----HHHHHHHHHhCCEEEEeCHHHHHHHHHHHhHHHHH-HHHHHHHHHHhcCChHHHHhhccc--chhhhhhcccCCH
Confidence 334444444444445556677788887777 874 333333222 356677 8999999999999
Q ss_pred CCCccccccccHHHHHhhchhhhccchhhccHHHH
Q 007512 418 APDDLDTRLLRAMITKGLIEPISDVFVNLVNADYT 452 (600)
Q Consensus 418 a~~~~~~~~~~~a~l~GlL~~~~~~~vn~vnA~~~ 452 (600)
. +|.++...|+..+...|+.+......+.++..-
T Consensus 222 ~-l~~~i~~~N~~~~~~~l~~~~~~l~~~~~~l~~ 255 (275)
T PRK08507 222 A-MWSDIFKQNKENVLEAIDEFIKELEQFKQLIEN 255 (275)
T ss_pred H-HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 8 999999999987777787777765556555543
|
|
| >PLN02494 adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.1e-14 Score=158.01 Aligned_cols=121 Identities=21% Similarity=0.305 Sum_probs=107.2
Q ss_pred ceeccCCEEEEEecChhHHHHHHHhhcCCCEEEEECCCCC-hhHHHHcCCcccCHHHHhccCCEEEEecCCCcccccccc
Q 007512 192 GVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAP-ADRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVLN 270 (600)
Q Consensus 192 g~~l~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~-~~~a~~~g~~~~~l~ell~~aDvV~l~~Pl~~~t~~li~ 270 (600)
+..+.||+++|+|+|.||+.+|+++++||++|+++|+++. ...+...|+..++++++++.+|+|+.+ ..++++++
T Consensus 249 ~i~LaGKtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA~~~G~~vv~leEal~~ADVVI~t----TGt~~vI~ 324 (477)
T PLN02494 249 DVMIAGKVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPICALQALMEGYQVLTLEDVVSEADIFVTT----TGNKDIIM 324 (477)
T ss_pred CCccCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhHHHHhcCCeeccHHHHHhhCCEEEEC----CCCccchH
Confidence 3458999999999999999999999999999999988763 356777888777899999999999984 34788999
Q ss_pred HhHhccCCCceEEEEccC-CccccHHHHHHh--HhcCCceEEEEeccCCC
Q 007512 271 DETFGKMKKGVRIINVAR-GGVIDEEALVRA--LDSGRVAQAALDVFTEE 317 (600)
Q Consensus 271 ~~~l~~mk~gailvNvar-g~ivde~aL~~a--L~~g~i~ga~lDv~~~E 317 (600)
.+.|+.||+|++|+|+|| +..||+++|.++ ++.+.+. +++|+|..+
T Consensus 325 ~e~L~~MK~GAiLiNvGr~~~eID~~aL~~~~~l~~~~i~-~~vd~y~~~ 373 (477)
T PLN02494 325 VDHMRKMKNNAIVCNIGHFDNEIDMLGLETYPGVKRITIK-PQTDRWVFP 373 (477)
T ss_pred HHHHhcCCCCCEEEEcCCCCCccCHHHHhhccccceeccC-CCceEEEcC
Confidence 999999999999999999 678999999987 8888886 999999987
|
|
| >PRK08655 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=5e-14 Score=154.57 Aligned_cols=233 Identities=17% Similarity=0.196 Sum_probs=160.8
Q ss_pred CEEEEEe-cChhHHHHHHHhhcCCCEEEEECCCCCh--hHHHHcCCccc-CHHHHhccCCEEEEecCCCccccccccHhH
Q 007512 198 KTLAVLG-FGKVGSEVARRAKGLGMHVIAHDPYAPA--DRARAIGVDLV-SFDEAIATADFISLHMPLTPATSKVLNDET 273 (600)
Q Consensus 198 ktiGIIG-lG~IG~~vA~~l~~~g~~V~~~d~~~~~--~~a~~~g~~~~-~l~ell~~aDvV~l~~Pl~~~t~~li~~~~ 273 (600)
++|+||| +|.||+++|+.|+..|++|.+||++... +.+.+.|+... ++.+.+.+||+|++|+|.. .+..++ ++.
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~G~~V~v~~r~~~~~~~~a~~~gv~~~~~~~e~~~~aDvVIlavp~~-~~~~vl-~~l 78 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEKGFEVIVTGRDPKKGKEVAKELGVEYANDNIDAAKDADIVIISVPIN-VTEDVI-KEV 78 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHcCCeeccCHHHHhccCCEEEEecCHH-HHHHHH-HHH
Confidence 4799997 9999999999999999999999987632 44556677543 6788899999999999953 455555 344
Q ss_pred hccCCCceEEEEccCCccccHHHHHHhHhcCCceEEEEeccCCCCCC-CCCccccCCcEEEcCCCCCCcHHHHHHHHHHH
Q 007512 274 FGKMKKGVRIINVARGGVIDEEALVRALDSGRVAQAALDVFTEEPPP-ADSKLVQHERVTVTPHLGASTMEAQEGVAIEI 352 (600)
Q Consensus 274 l~~mk~gailvNvarg~ivde~aL~~aL~~g~i~ga~lDv~~~EP~~-~~~~L~~~~nvilTPH~~~~t~ea~~~~~~~~ 352 (600)
...++++++++|+++.+....+++.+.+..+. .+.+.-|.. +..+++....+++||+-+. +.+ .
T Consensus 79 ~~~l~~~~iViDvsSvK~~~~~~l~~~~~~~~------~~V~~HPmaGp~~~~~~g~~~il~p~~~~-~~~--------~ 143 (437)
T PRK08655 79 APHVKEGSLLMDVTSVKERPVEAMEEYAPEGV------EILPTHPMFGPRTPSLKGQVVILTPTEKR-SNP--------W 143 (437)
T ss_pred HhhCCCCCEEEEcccccHHHHHHHHHhcCCCC------EEEEcCCCCCCCCcccCCCEEEEecCCCC-CHH--------H
Confidence 56689999999999866555566655554321 111223321 2246888899999997532 222 2
Q ss_pred HHHHHHHHcCCCCCccccCCCCChhhhhccc--chHHHH---HHH---H---HHHHHHhcCCCCceEE----EEEEeecC
Q 007512 353 AEAVVGALKGELAATAVNAPMVPAEVLTELK--PFVELA---EKL---G---RLAVQLVAGGSGVKTV----KVSYASSR 417 (600)
Q Consensus 353 ~~~l~~~l~g~~~~~~vn~~~i~~~~~~~~~--p~~~la---~~l---G---~l~~qL~~g~~~~k~v----~i~~~Gs~ 417 (600)
++.+.++++..+.......|..|+..+..++ ||+... ..+ | ..+.+++++ +|++. ++++.+++
T Consensus 144 ~~~v~~ll~~~G~~v~~~~~e~HD~~~a~vs~lph~~a~al~~~l~~~g~~~~~~~~~a~~--~frd~~~~~tRIa~~~p 221 (437)
T PRK08655 144 FDKVKNFLEKEGARVIVTSPEEHDRIMSVVQGLTHFAYISIASTLKRLGVDIKESRKFASP--IYELMIDIIGRILGQNP 221 (437)
T ss_pred HHHHHHHHHHcCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhhcCh--hhHHHHHHHHHHhcCCH
Confidence 3455566655555555566667777787776 765422 222 2 223457777 89985 99999999
Q ss_pred CCCccccccccHHHHHhhchhhhccchhhccHHH
Q 007512 418 APDDLDTRLLRAMITKGLIEPISDVFVNLVNADY 451 (600)
Q Consensus 418 a~~~~~~~~~~~a~l~GlL~~~~~~~vn~vnA~~ 451 (600)
. +|.+++..|+ .+...++.+..+.-.+.++..
T Consensus 222 ~-lw~dI~~~N~-~~~~~l~~~~~~l~~l~~~l~ 253 (437)
T PRK08655 222 Y-LYASIQMNNP-QIPEIHETFIKECEELSELVK 253 (437)
T ss_pred H-HHHHHHHhCH-HHHHHHHHHHHHHHHHHHHHH
Confidence 8 9999999999 466777777666555555554
|
|
| >TIGR00936 ahcY adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.5e-13 Score=148.11 Aligned_cols=227 Identities=21% Similarity=0.244 Sum_probs=151.4
Q ss_pred HhHHHHhcccC-cEEEccCCCHhHHhhh----cC-CceEEEEcCCCCCCHHHHhcc---CCCceE-EEEcCcccCccC-h
Q 007512 69 QAGLDLLNEFA-NVDCAYNLSPEELCTK----IS-LCDALIVRSGTKVNRDVFESS---AGRLKV-VGRAGVGIDNVD-L 137 (600)
Q Consensus 69 ~~~~~~l~~~~-~v~~~~~~~~~el~~~----i~-~~d~li~~~~~~~~~~~l~~~---~~~Lk~-I~~~g~G~d~iD-~ 137 (600)
+.....|.+.+ .|.-....+.+|.... +. ..|. ++..+..++.-+-... .++++= +=-.++|+...- +
T Consensus 71 d~vaaaL~~~gi~v~a~~~~~~~ey~~~~~~~l~~~p~~-iiDdGgdl~~~~~~~~~~~~~~~~G~~EeTttGv~rl~~~ 149 (406)
T TIGR00936 71 DDVAAALAKAGIPVFAWRGETNEEYYWAIEQVLDHEPNI-IIDDGADLIFLLHTERPELLEKIIGGSEETTTGVIRLRAM 149 (406)
T ss_pred HHHHHHHHhCCceEEEecCCCHHHHHHHHHHHhcCCCCE-EEecccHHHHHHHHhhhhhhhccEEEeecchHHHHHHHHH
Confidence 44555666544 4444455566664332 22 3444 3343433433222211 112322 234677776652 2
Q ss_pred hHHHhCCceeecCCCCChHHHHH--HHHHHHHHHHhchHHHHHHHHcCccccccccceeccCCEEEEEecChhHHHHHHH
Q 007512 138 AAATEFGCLVVNAPTANTVAAAE--HGIALLAAMARNVAQADASVKAGKWQRNKYVGVSLVGKTLAVLGFGKVGSEVARR 215 (600)
Q Consensus 138 ~aa~~~GI~V~n~p~~~~~~vAE--~~l~lll~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktiGIIGlG~IG~~vA~~ 215 (600)
+...+-..+|+++..+.+....| |..+.- ....+ + + ..+..+.|++++|+|+|.||+.+|++
T Consensus 150 ~~~~~L~~Pvi~vnds~~K~~fDn~yg~g~s--~~~~i------~------r--~t~~~l~Gk~VvViG~G~IG~~vA~~ 213 (406)
T TIGR00936 150 EAEGVLKFPAINVNDAYTKSLFDNRYGTGQS--TIDGI------L------R--ATNLLIAGKTVVVAGYGWCGKGIAMR 213 (406)
T ss_pred HHcCCCCCcEEEecchhhchhhhcccccchh--HHHHH------H------H--hcCCCCCcCEEEEECCCHHHHHHHHH
Confidence 33334567788777665555555 222211 00000 0 0 12446899999999999999999999
Q ss_pred hhcCCCEEEEECCCC-ChhHHHHcCCcccCHHHHhccCCEEEEecCCCccccccccHhHhccCCCceEEEEccCCcc-cc
Q 007512 216 AKGLGMHVIAHDPYA-PADRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGV-ID 293 (600)
Q Consensus 216 l~~~g~~V~~~d~~~-~~~~a~~~g~~~~~l~ell~~aDvV~l~~Pl~~~t~~li~~~~l~~mk~gailvNvarg~i-vd 293 (600)
++++|++|+++|.++ ....+...|+...+++++++.+|+|+.++. +.++++...|..||+|++++|+||+.+ +|
T Consensus 214 ak~~Ga~ViV~d~dp~r~~~A~~~G~~v~~leeal~~aDVVItaTG----~~~vI~~~~~~~mK~GailiN~G~~~~eId 289 (406)
T TIGR00936 214 ARGMGARVIVTEVDPIRALEAAMDGFRVMTMEEAAKIGDIFITATG----NKDVIRGEHFENMKDGAIVANIGHFDVEID 289 (406)
T ss_pred HhhCcCEEEEEeCChhhHHHHHhcCCEeCCHHHHHhcCCEEEECCC----CHHHHHHHHHhcCCCCcEEEEECCCCceeC
Confidence 999999999997665 334566778877788999999999988654 678899999999999999999999998 99
Q ss_pred HHHHHHhHhcCCceEEEEeccCC
Q 007512 294 EEALVRALDSGRVAQAALDVFTE 316 (600)
Q Consensus 294 e~aL~~aL~~g~i~ga~lDv~~~ 316 (600)
.++|.+++.+....+..+|+|.-
T Consensus 290 ~~aL~~~~~~~~~~~~~v~~~~~ 312 (406)
T TIGR00936 290 VKALEELAVEKRNVRPQVDEYIL 312 (406)
T ss_pred HHHHHHHHhhccccccceEEEEe
Confidence 99999988887777899999884
|
This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704). |
| >PRK13403 ketol-acid reductoisomerase; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.4e-13 Score=142.91 Aligned_cols=94 Identities=26% Similarity=0.392 Sum_probs=82.8
Q ss_pred ceeccCCEEEEEecChhHHHHHHHhhcCCCEEEEECCCC-ChhHHHHcCCcccCHHHHhccCCEEEEecCCCcccccccc
Q 007512 192 GVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYA-PADRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVLN 270 (600)
Q Consensus 192 g~~l~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~-~~~~a~~~g~~~~~l~ell~~aDvV~l~~Pl~~~t~~li~ 270 (600)
-..|+||||||||+|.||+.+|++|+++|++|++||+.. +.+.+...|+...++++++++||+|++|+|. ++++++++
T Consensus 11 ~~~LkgKtVGIIG~GsIG~amA~nL~d~G~~ViV~~r~~~s~~~A~~~G~~v~sl~Eaak~ADVV~llLPd-~~t~~V~~ 89 (335)
T PRK13403 11 VELLQGKTVAVIGYGSQGHAQAQNLRDSGVEVVVGVRPGKSFEVAKADGFEVMSVSEAVRTAQVVQMLLPD-EQQAHVYK 89 (335)
T ss_pred hhhhCcCEEEEEeEcHHHHHHHHHHHHCcCEEEEEECcchhhHHHHHcCCEECCHHHHHhcCCEEEEeCCC-hHHHHHHH
Confidence 357999999999999999999999999999999996543 4455667788878999999999999999996 67899999
Q ss_pred HhHhccCCCceEEEEc
Q 007512 271 DETFGKMKKGVRIINV 286 (600)
Q Consensus 271 ~~~l~~mk~gailvNv 286 (600)
.+.+..||+|++|+-.
T Consensus 90 ~eil~~MK~GaiL~f~ 105 (335)
T PRK13403 90 AEVEENLREGQMLLFS 105 (335)
T ss_pred HHHHhcCCCCCEEEEC
Confidence 9999999999988753
|
|
| >PLN02712 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.44 E-value=9.1e-14 Score=159.29 Aligned_cols=242 Identities=14% Similarity=0.109 Sum_probs=159.2
Q ss_pred cceeccCCEEEEEecChhHHHHHHHhhcCCCEEEEECCCCChhHHHHcCCccc-CHHHHhc-cCCEEEEecCCCcccccc
Q 007512 191 VGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPADRARAIGVDLV-SFDEAIA-TADFISLHMPLTPATSKV 268 (600)
Q Consensus 191 ~g~~l~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~~~~a~~~g~~~~-~l~ell~-~aDvV~l~~Pl~~~t~~l 268 (600)
.|.++.+++|||||+|+||+++|++++.+|++|++||+....+.+.+.|+... ++++++. +||+|++|+| ...+..+
T Consensus 363 ~~~~~~~~kIgIIGlG~mG~slA~~L~~~G~~V~~~dr~~~~~~a~~~Gv~~~~~~~el~~~~aDvVILavP-~~~~~~v 441 (667)
T PLN02712 363 CVNDGSKLKIAIVGFGNFGQFLAKTMVKQGHTVLAYSRSDYSDEAQKLGVSYFSDADDLCEEHPEVILLCTS-ILSTEKV 441 (667)
T ss_pred ccCCCCCCEEEEEecCHHHHHHHHHHHHCcCEEEEEECChHHHHHHHcCCeEeCCHHHHHhcCCCEEEECCC-hHHHHHH
Confidence 46788999999999999999999999999999999998764455666777543 7888776 5999999999 4567888
Q ss_pred ccHhHhccCCCceEEEEccCCccccHHHHHHhHhcC-Cce-E---EEEeccCCCCCCCCCccccCCcEEEcCCCCCCcHH
Q 007512 269 LNDETFGKMKKGVRIINVARGGVIDEEALVRALDSG-RVA-Q---AALDVFTEEPPPADSKLVQHERVTVTPHLGASTME 343 (600)
Q Consensus 269 i~~~~l~~mk~gailvNvarg~ivde~aL~~aL~~g-~i~-g---a~lDv~~~EP~~~~~~L~~~~nvilTPH~~~~t~e 343 (600)
+.+.....||+|++++|+++++-...+.+.+.+..+ .+. + +|..+-... .....-|++. .++.++ .+
T Consensus 442 i~~l~~~~lk~g~ivvDv~SvK~~~~~~~~~~l~~~~~~v~~HPm~G~e~~~~G-~~~~~~lf~~-~~v~~~------~~ 513 (667)
T PLN02712 442 LKSLPFQRLKRSTLFVDVLSVKEFPRNLFLQHLPQDFDILCTHPMFGPESGKNG-WNNLAFVFDK-VRIGSD------DR 513 (667)
T ss_pred HHHHHHhcCCCCcEEEECCCccHHHHHHHHHhccCCCceEeeCCCCCccccccc-hhhhhhhccC-cEeCCC------cc
Confidence 876555569999999999998754555555555443 122 2 222221000 0011124443 222111 11
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCccccCCCCChhhhhccc--chHHHHHHHHHHH---HHHhcCCCCceEEE----EEEe
Q 007512 344 AQEGVAIEIAEAVVGALKGELAATAVNAPMVPAEVLTELK--PFVELAEKLGRLA---VQLVAGGSGVKTVK----VSYA 414 (600)
Q Consensus 344 a~~~~~~~~~~~l~~~l~g~~~~~~vn~~~i~~~~~~~~~--p~~~la~~lG~l~---~qL~~g~~~~k~v~----i~~~ 414 (600)
. .+.++.+.+++...+.+.....+..|+..+..++ ||+ ++..|..+. ..+.++ +|+.++ +++.
T Consensus 514 ~-----~~~~~~l~~l~~~lGa~vv~ms~eeHD~~~A~vShLpHl-la~~L~~~~~~~~~~~~~--gfr~l~~Li~Ria~ 585 (667)
T PLN02712 514 R-----VSRCDSFLDIFAREGCRMVEMSCAEHDWHAAGSQFITHT-MGRLLEKLGLESTPINTK--GYETLLNLVENTAG 585 (667)
T ss_pred h-----HHHHHHHHHHHHHcCCEEEEeCHHHHHHHHHHHHHHHHH-HHHHHHHCCCcccccccH--HHHHHHHHHHhhcC
Confidence 1 2223455566655566666667777777777666 653 222222111 123344 688877 9999
Q ss_pred ecCCCCccccccccHHHHHhhchhhhccchhhccHHH
Q 007512 415 SSRAPDDLDTRLLRAMITKGLIEPISDVFVNLVNADY 451 (600)
Q Consensus 415 Gs~a~~~~~~~~~~~a~l~GlL~~~~~~~vn~vnA~~ 451 (600)
+++. +|+++...|+.. ...|+.+......+.++..
T Consensus 586 ~~p~-l~~dI~~~N~~a-~~~l~~f~~~l~~~~~~l~ 620 (667)
T PLN02712 586 DSFD-LYYGLFMYNVNA-MEQLERLDLAFESLKKQLF 620 (667)
T ss_pred CCHH-HHHHHHHHChHH-HHHHHHHHHHHHHHHHHHH
Confidence 9998 999999999988 6677777766555555543
|
|
| >COG1760 SdaA L-serine deaminase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.44 E-value=3.7e-16 Score=156.34 Aligned_cols=198 Identities=18% Similarity=0.125 Sum_probs=177.7
Q ss_pred cchHHHHHHHHHHHHHHhcCCCC---ceEEEEEEeecCCCCccccccccHHHHHhhchhhhccchhhccHHHHHhhcCce
Q 007512 383 KPFVELAEKLGRLAVQLVAGGSG---VKTVKVSYASSRAPDDLDTRLLRAMITKGLIEPISDVFVNLVNADYTAKQRGLR 459 (600)
Q Consensus 383 ~p~~~la~~lG~l~~qL~~g~~~---~k~v~i~~~Gs~a~~~~~~~~~~~a~l~GlL~~~~~~~vn~vnA~~~A~e~GI~ 459 (600)
+.+..-+.|+|+.+++|.+. . ++++.+.++++++ .++.++.++.|.+.|.+ ++.+++.++.+.+..+.+.||.
T Consensus 51 s~~~aGa~rigr~A~~l~~~--~~~~~~~v~~~a~a~~e-ena~Gg~~~~Apt~Ga~-G~~P~vl~~~~~~~~a~~~~i~ 126 (262)
T COG1760 51 SSHTAGALRIGRRARALFGE--LKNVPDWVNIYAYASFE-ENAAGGGTVTAPTAGAL-GIIPAVLRIKESFEIAAEKGIK 126 (262)
T ss_pred cccCcccceechhHHHHHHH--HhhhhHHHHHHHHHhhH-hhccCCcEeeeccCccc-cCCcchHHHHHHhhhhhhhhhH
Confidence 34555677899999999877 5 8899999999998 99999999999999999 6666679999999999999999
Q ss_pred EEEEEeecCCCCCCCCceEEEEEeecccccccccCCCcEEEEEE-EEeCCceEEEEEcceEEEeecCccEEEEEecCCCC
Q 007512 460 LTEERILLDGSPESPLEFIQVQIANVESKFASAISESGEIKVEG-RVKDGVPHLTKVGSFEVDVSLEGSIILCRQVDQPG 538 (600)
Q Consensus 460 v~~~~~~~~~~~~~~~n~i~v~~~~~~~~~~~~~~~~~~~~v~G-sv~gG~~~I~~Idgf~v~~~g~~~~Liv~~~D~pG 538 (600)
.++..+...+ ..|+|+.+|... +++...+.| +.++|.+.|++++|+.+++.+..+++++.|. +|
T Consensus 127 ~fl~~a~aig--~~~~nnAsIsga-----------e~gcq~evGsa~~maaa~l~el~Ggs~~q~~~a~~i~~~h~--lG 191 (262)
T COG1760 127 IFLLTAGAIG--ALHPNNASISGA-----------EGGCQGEVGSAIGMGAAALTELNGGSPEQSGNAPEIAMEHN--LG 191 (262)
T ss_pred hhhhhccccc--ccccCcceEEec-----------cCceEEEeehhhhhHHHHHHHHhCCChHHhccccHHHHhcC--CC
Confidence 9988776543 379999998874 588999999 5666899999999999999999999999998 99
Q ss_pred Chhh-HHhhhhcCCccccceEeeeecCCCcEEEEEEeCCCCcHHHHHHHhcCCCcceEEEee
Q 007512 539 MIGT-VGSILGSENVNVSFMSVGRVAPRKHAVMAIGVDEQPRKETLKKIGDVPAIEEFVFLK 599 (600)
Q Consensus 539 ~Ia~-V~~iL~~~~INIa~m~v~R~~~g~~al~~i~~D~~~~~~~l~~l~~~~~v~~v~~i~ 599 (600)
++.. |+.++....||++.|...|...+.++.|+++.|..+.+++++.+++.+....++|.+
T Consensus 192 ltcdpVaglV~vpcI~rnam~a~rai~aa~~am~~~~~~~~~DevI~tM~~~g~~m~~~y~e 253 (262)
T COG1760 192 LTCDPVAGLVQVPCINRNAMGAVRAINGAKAAMAIEVDQRPLDEVIETMYETGKDMNVKYRE 253 (262)
T ss_pred ceehhhhchhhhhhhhHHHHHHHHHhhhhhhhheecCCCCChHHHHHHHHHhhhhcchhhee
Confidence 9999 999999999999999999999999999999999999999999999999998888764
|
|
| >PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=7.1e-13 Score=142.78 Aligned_cols=260 Identities=12% Similarity=0.056 Sum_probs=167.0
Q ss_pred HHHHHHHHHHHHHHHhchHHHHHHHHcCccccccccceeccCCEEEEEe-cChhHHHHHHHhhcCCCEEEEECCCCChhH
Q 007512 156 VAAAEHGIALLAAMARNVAQADASVKAGKWQRNKYVGVSLVGKTLAVLG-FGKVGSEVARRAKGLGMHVIAHDPYAPADR 234 (600)
Q Consensus 156 ~~vAE~~l~lll~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktiGIIG-lG~IG~~vA~~l~~~g~~V~~~d~~~~~~~ 234 (600)
...++..+-.++..+|...+ .. |-+ ...-..++|+||| +|.||+++|+.|+..|..|.+||+...
T Consensus 68 ~~~~~~i~~~i~~~s~~~q~------~~-~~~----~~~~~~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~~~--- 133 (374)
T PRK11199 68 PDLIEDVLRRVMRESYSSEN------DK-GFK----TLNPDLRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQDDW--- 133 (374)
T ss_pred HHHHHHHHHHHHHHHHHHhH------Hh-ccc----ccCcccceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCCcc---
Confidence 33455566666666664332 11 111 1122458999999 999999999999999999999997531
Q ss_pred HHHcCCcccCHHHHhccCCEEEEecCCCccccccccHhHhccCCCceEEEEccCCccccHHHHHHhHhcCCceEEEEe-c
Q 007512 235 ARAIGVDLVSFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVIDEEALVRALDSGRVAQAALD-V 313 (600)
Q Consensus 235 a~~~g~~~~~l~ell~~aDvV~l~~Pl~~~t~~li~~~~l~~mk~gailvNvarg~ivde~aL~~aL~~g~i~ga~lD-v 313 (600)
.+.++++++||+|++|+|... +..++. + +..+++|++|+|+++.+.....++.+.+.. ++ .+.+ .
T Consensus 134 --------~~~~~~~~~aDlVilavP~~~-~~~~~~-~-l~~l~~~~iv~Dv~SvK~~~~~~~~~~~~~-~f--vg~HPm 199 (374)
T PRK11199 134 --------DRAEDILADAGMVIVSVPIHL-TEEVIA-R-LPPLPEDCILVDLTSVKNAPLQAMLAAHSG-PV--LGLHPM 199 (374)
T ss_pred --------hhHHHHHhcCCEEEEeCcHHH-HHHHHH-H-HhCCCCCcEEEECCCccHHHHHHHHHhCCC-CE--EeeCCC
Confidence 246778899999999999654 555553 3 444899999999988654334455443332 22 2222 2
Q ss_pred cCCCCCCCCCccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCccccCCCCChhhhhccc--chHHHHHH
Q 007512 314 FTEEPPPADSKLVQHERVTVTPHLGASTMEAQEGVAIEIAEAVVGALKGELAATAVNAPMVPAEVLTELK--PFVELAEK 391 (600)
Q Consensus 314 ~~~EP~~~~~~L~~~~nvilTPH~~~~t~ea~~~~~~~~~~~l~~~l~g~~~~~~vn~~~i~~~~~~~~~--p~~~la~~ 391 (600)
++.+ ...+....++++|+ ...++. +.+.++++..+.......|.-|+..+..++ ||+.....
T Consensus 200 ~G~~-----~~~~~~~~vv~~~~---~~~~~~--------~~~~~l~~~lG~~v~~~~~~~HD~~~a~vshLpH~~a~al 263 (374)
T PRK11199 200 FGPD-----VGSLAKQVVVVCDG---RQPEAY--------QWLLEQIQVWGARLHRISAVEHDQNMAFIQALRHFATFAY 263 (374)
T ss_pred CCCC-----CcccCCCEEEEcCC---CCchHH--------HHHHHHHHHCCCEEEECCHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222 22355566778774 222222 233444444445555566777788887777 66543332
Q ss_pred HHHHH---------HHHhcCCCCceE----EEEEEeecCCCCccccccccHHHHHhhchhhhccchhhccHHHHHhhcCc
Q 007512 392 LGRLA---------VQLVAGGSGVKT----VKVSYASSRAPDDLDTRLLRAMITKGLIEPISDVFVNLVNADYTAKQRGL 458 (600)
Q Consensus 392 lG~l~---------~qL~~g~~~~k~----v~i~~~Gs~a~~~~~~~~~~~a~l~GlL~~~~~~~vn~vnA~~~A~e~GI 458 (600)
...++ ..+.++ +|++ +++++++++. +|.+++..|+..+ ..|+.+..+...+.++..-.++..+
T Consensus 264 ~~~l~~~~~~~~~~~~~~~~--~fr~~la~~tRia~~~p~-lw~dI~~~N~~~~-~~l~~~~~~l~~l~~~l~~~d~~~l 339 (374)
T PRK11199 264 GLHLAKENVDLEQLLALSSP--IYRLELAMVGRLFAQDPQ-LYADIIMSSPENL-ALIKRYYQRFGEALELLEQGDKQAF 339 (374)
T ss_pred HHHHHHcCCCHHHHHHhcCh--HHHHHHHHHHHHHcCCHH-HHHHHHHhChhHH-HHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 22221 234455 7888 9999999998 9999999999888 8888888776677777765555555
Q ss_pred eEEEE
Q 007512 459 RLTEE 463 (600)
Q Consensus 459 ~v~~~ 463 (600)
.-.|.
T Consensus 340 ~~~~~ 344 (374)
T PRK11199 340 IDSFR 344 (374)
T ss_pred HHHHH
Confidence 44443
|
|
| >PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=4.1e-12 Score=137.89 Aligned_cols=211 Identities=21% Similarity=0.234 Sum_probs=141.0
Q ss_pred HhHHHHhcccC-cEEEccCCCHhHHhh----hc--CCceEEEEcCCCCCCHHHHhcc---CCCceEE-EEcCcccCcc-C
Q 007512 69 QAGLDLLNEFA-NVDCAYNLSPEELCT----KI--SLCDALIVRSGTKVNRDVFESS---AGRLKVV-GRAGVGIDNV-D 136 (600)
Q Consensus 69 ~~~~~~l~~~~-~v~~~~~~~~~el~~----~i--~~~d~li~~~~~~~~~~~l~~~---~~~Lk~I-~~~g~G~d~i-D 136 (600)
+.....|.+.+ .|.-....+.+|... .+ ...|+ |+.-+..++.-+-... .++++=+ =-.++|+..+ .
T Consensus 87 d~vaaaL~~~gi~v~a~~~~~~~ey~~~~~~~l~~~~p~i-iiDdGgdl~~~~~~~~~~~~~~i~G~~EeTttGv~rl~~ 165 (425)
T PRK05476 87 DDVAAALAAAGIPVFAWKGETLEEYWECIERALDGHGPNM-ILDDGGDLTLLVHTERPELLANIKGVTEETTTGVHRLYA 165 (425)
T ss_pred HHHHHHHHHCCceEEecCCCCHHHHHHHHHHHhcCCCCCE-EEecccHHHHHHHHHhhHhHhccEeeeecchHHHHHHHH
Confidence 45566676543 443334456665432 23 23454 4444444433332221 1233333 2467888775 3
Q ss_pred hhHHHhCCceeecCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCccccc-cccceeccCCEEEEEecChhHHHHHHH
Q 007512 137 LAAATEFGCLVVNAPTANTVAAAEHGIALLAAMARNVAQADASVKAGKWQRN-KYVGVSLVGKTLAVLGFGKVGSEVARR 215 (600)
Q Consensus 137 ~~aa~~~GI~V~n~p~~~~~~vAE~~l~lll~~~R~i~~~~~~~~~g~W~~~-~~~g~~l~gktiGIIGlG~IG~~vA~~ 215 (600)
+....+.+++|+|++.+++....|...+.-- +-|+.- ...+..+.|++++|+|+|.||+.+|++
T Consensus 166 ~~~~~~l~~Pv~~vn~s~~K~~~dn~~gt~~---------------s~~~ai~rat~~~l~Gk~VlViG~G~IG~~vA~~ 230 (425)
T PRK05476 166 MAKDGALKFPAINVNDSVTKSKFDNRYGTGE---------------SLLDGIKRATNVLIAGKVVVVAGYGDVGKGCAQR 230 (425)
T ss_pred HHHcCCCCCCEEecCCcccCccccccHHHHh---------------hhHHHHHHhccCCCCCCEEEEECCCHHHHHHHHH
Confidence 3344567899999999998886553332222 223210 012446899999999999999999999
Q ss_pred hhcCCCEEEEECCCC-ChhHHHHcCCcccCHHHHhccCCEEEEecCCCccccccccHhHhccCCCceEEEEccCCcc-cc
Q 007512 216 AKGLGMHVIAHDPYA-PADRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGV-ID 293 (600)
Q Consensus 216 l~~~g~~V~~~d~~~-~~~~a~~~g~~~~~l~ell~~aDvV~l~~Pl~~~t~~li~~~~l~~mk~gailvNvarg~i-vd 293 (600)
++++|++|+++|+.+ ....+...|+...+++++++.+|+|+.++. +.++++...+..||+|++++|+|+... +|
T Consensus 231 lr~~Ga~ViV~d~dp~ra~~A~~~G~~v~~l~eal~~aDVVI~aTG----~~~vI~~~~~~~mK~GailiNvG~~d~Eid 306 (425)
T PRK05476 231 LRGLGARVIVTEVDPICALQAAMDGFRVMTMEEAAELGDIFVTATG----NKDVITAEHMEAMKDGAILANIGHFDNEID 306 (425)
T ss_pred HHhCCCEEEEEcCCchhhHHHHhcCCEecCHHHHHhCCCEEEECCC----CHHHHHHHHHhcCCCCCEEEEcCCCCCccC
Confidence 999999999999876 334455668877789999999999988763 567899999999999999999999765 56
Q ss_pred HHHHHH
Q 007512 294 EEALVR 299 (600)
Q Consensus 294 e~aL~~ 299 (600)
.++|.+
T Consensus 307 ~~~L~~ 312 (425)
T PRK05476 307 VAALEE 312 (425)
T ss_pred hHHHhh
Confidence 676643
|
|
| >PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=5.1e-12 Score=147.57 Aligned_cols=225 Identities=22% Similarity=0.220 Sum_probs=147.6
Q ss_pred CEEEEEecChhHHHHHHHhhcCC--CEEEEECCCC-ChhHHHHcCCc---ccCHHHHhccCCEEEEecCCCccccccccH
Q 007512 198 KTLAVLGFGKVGSEVARRAKGLG--MHVIAHDPYA-PADRARAIGVD---LVSFDEAIATADFISLHMPLTPATSKVLND 271 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~g--~~V~~~d~~~-~~~~a~~~g~~---~~~l~ell~~aDvV~l~~Pl~~~t~~li~~ 271 (600)
++|||||+|.||+++|+.++..| .+|++||++. ..+.+.+.|+. ..++++++.+||+|++|+|.. ....++.
T Consensus 4 ~~I~IIG~G~mG~ala~~l~~~G~~~~V~~~d~~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvVilavp~~-~~~~vl~- 81 (735)
T PRK14806 4 GRVVVIGLGLIGGSFAKALRERGLAREVVAVDRRAKSLELAVSLGVIDRGEEDLAEAVSGADVIVLAVPVL-AMEKVLA- 81 (735)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCCEEEEEECChhHHHHHHHCCCCCcccCCHHHHhcCCCEEEECCCHH-HHHHHHH-
Confidence 68999999999999999999877 5899999986 34556667763 346888899999999999953 3444442
Q ss_pred hHhccCCCceEEEEccCCccccHHHHHHhHhcCCceEEEEeccCCCCC---------CCCCccccCCcEEEcCCCCCCcH
Q 007512 272 ETFGKMKKGVRIINVARGGVIDEEALVRALDSGRVAQAALDVFTEEPP---------PADSKLVQHERVTVTPHLGASTM 342 (600)
Q Consensus 272 ~~l~~mk~gailvNvarg~ivde~aL~~aL~~g~i~ga~lDv~~~EP~---------~~~~~L~~~~nvilTPH~~~~t~ 342 (600)
.....++++++|+|++..+....+.+.+.+....+ .+...-|. +++..||...++++||+.... .
T Consensus 82 ~l~~~~~~~~ii~d~~svk~~~~~~l~~~~~~~~~-----r~~~~hPm~G~~~~g~~~a~~~l~~~~~~~~~~~~~~~-~ 155 (735)
T PRK14806 82 DLKPLLSEHAIVTDVGSTKGNVVDAARAVFGELPA-----GFVPGHPIAGSEKSGVHAANADLFRNHKVILTPLAETD-P 155 (735)
T ss_pred HHHHhcCCCcEEEEcCCCchHHHHHHHHhccccCC-----eEEecCCcCcCCcchhhhhhhHHhCCCeEEEECCCCCC-H
Confidence 23345688999999997553334445444433211 11222221 245579999999999975433 3
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCCCccccCCCCChhhhhccc--chH---HHHHHHH-----HHHHHHhcCCCCceEEEEE
Q 007512 343 EAQEGVAIEIAEAVVGALKGELAATAVNAPMVPAEVLTELK--PFV---ELAEKLG-----RLAVQLVAGGSGVKTVKVS 412 (600)
Q Consensus 343 ea~~~~~~~~~~~l~~~l~g~~~~~~vn~~~i~~~~~~~~~--p~~---~la~~lG-----~l~~qL~~g~~~~k~v~i~ 412 (600)
+.. +.+.++++..+....+..+..++..+...+ ||+ .+++.+. ..+..++++ +|++.++.
T Consensus 156 ~~~--------~~~~~l~~~~G~~~~~~~~~~hD~~~a~~~~~ph~~~~~l~~~l~~~~~~~~~~~~a~~--~f~~~tRi 225 (735)
T PRK14806 156 AAL--------ARVDRLWRAVGADVLHMDVAHHDEVLAATSHLPHLLAFSLVDQLANREDNLDIFRYAAG--GFRDFTRI 225 (735)
T ss_pred HHH--------HHHHHHHHHcCCEEEEcCHHHHhHHHHHhcchHHHHHHHHHHHHhhcCChhHHHhhhcc--chhccccc
Confidence 322 334445544444343444555566665555 763 2223331 234578887 89999999
Q ss_pred EeecCCCCccccccccHHHHHhhchhhhc
Q 007512 413 YASSRAPDDLDTRLLRAMITKGLIEPISD 441 (600)
Q Consensus 413 ~~Gs~a~~~~~~~~~~~a~l~GlL~~~~~ 441 (600)
+.+++. +|.++..++...+...|+.+..
T Consensus 226 a~~~p~-~~~di~~~n~~~~~~~l~~~~~ 253 (735)
T PRK14806 226 AASDPV-MWHDIFLANKEAVLRALDHFRD 253 (735)
T ss_pred ccCCHH-HHHHHHHHhHHHHHHHHHHHHH
Confidence 999998 9999998888766444444433
|
|
| >PLN02712 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.31 E-value=3.7e-12 Score=146.11 Aligned_cols=240 Identities=15% Similarity=0.146 Sum_probs=155.8
Q ss_pred eccCCEEEEEecChhHHHHHHHhhcCCCEEEEECCCCChhHHHHcCCcc-cCHHHHh-ccCCEEEEecCCCccccccccH
Q 007512 194 SLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPADRARAIGVDL-VSFDEAI-ATADFISLHMPLTPATSKVLND 271 (600)
Q Consensus 194 ~l~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~~~~a~~~g~~~-~~l~ell-~~aDvV~l~~Pl~~~t~~li~~ 271 (600)
.-+.++|||||+|+||+++|+.++.+|++|++||++.....+.+.|+.. .++++++ .+||+|++|+|. ..+..++..
T Consensus 49 ~~~~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~~~~A~~~Gv~~~~d~~e~~~~~aDvViLavP~-~~~~~vl~~ 127 (667)
T PLN02712 49 NTTQLKIAIIGFGNYGQFLAKTLISQGHTVLAHSRSDHSLAARSLGVSFFLDPHDLCERHPDVILLCTSI-ISTENVLKS 127 (667)
T ss_pred cCCCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHcCCEEeCCHHHHhhcCCCEEEEcCCH-HHHHHHHHh
Confidence 3445789999999999999999999999999999886555677778754 3677866 569999999994 467777766
Q ss_pred hHhccCCCceEEEEccCCccccHHHHHHhHhcCC-ceEEEEe-ccCCCCCCCCCccccCCcEEEcCCCCCCcHHHHHHHH
Q 007512 272 ETFGKMKKGVRIINVARGGVIDEEALVRALDSGR-VAQAALD-VFTEEPPPADSKLVQHERVTVTPHLGASTMEAQEGVA 349 (600)
Q Consensus 272 ~~l~~mk~gailvNvarg~ivde~aL~~aL~~g~-i~ga~lD-v~~~EP~~~~~~L~~~~nvilTPH~~~~t~ea~~~~~ 349 (600)
..+..|++|++|+|+++-+..-.+++.+.+..+. +.+ .+ -|+.|. ..+ -|..-.++++|.+.+...+ .
T Consensus 128 l~~~~l~~g~iVvDv~SvK~~~~~~l~~~l~~~~~~v~--~HPMaG~e~--~~~-g~~~~~~~~~~~~~~~~~~-----~ 197 (667)
T PLN02712 128 LPLQRLKRNTLFVDVLSVKEFAKNLLLDYLPEDFDIIC--SHPMFGPQS--AKH-GWDGLRFVYEKVRIGNEEL-----R 197 (667)
T ss_pred hhhhcCCCCeEEEECCCCcHHHHHHHHHhcCCCCeEEe--eCCcCCCcc--ccc-hhccCcEEEeeccCCCccc-----c
Confidence 5445689999999998766433445555554432 222 11 123331 111 1233346777655322111 1
Q ss_pred HHHHHHHHHHHcCCCCCccccCCCCChhhhhccc--chHHHHHHHHHHHHHHhcCCCC---------ceEEEEEEeecCC
Q 007512 350 IEIAEAVVGALKGELAATAVNAPMVPAEVLTELK--PFVELAEKLGRLAVQLVAGGSG---------VKTVKVSYASSRA 418 (600)
Q Consensus 350 ~~~~~~l~~~l~g~~~~~~vn~~~i~~~~~~~~~--p~~~la~~lG~l~~qL~~g~~~---------~k~v~i~~~Gs~a 418 (600)
.+.++.+.++++..+.+.....+..|+..+..++ ||+ +|..| ..+.-+..+ ++-+++++.+++.
T Consensus 198 ~~~~~~l~~l~~~lGa~v~~ms~eeHD~~~A~vshLpH~-la~~L----~~~~~~~~~~~~~~~~~~l~l~~Ria~~~p~ 272 (667)
T PLN02712 198 VSRCKSFLEVFEREGCKMVEMSCTEHDKYAAESQFITHT-VGRVL----EMLKLESTPINTKGYESLLDLVENTCGDSFD 272 (667)
T ss_pred HHHHHHHHHHHHHcCCEEEEeCHHHHHHHHHHHHHHHHH-HHHHH----HHhcccccccCCccHHHHHHHHHHHhcCCHH
Confidence 2233455566665566667777788888888888 665 33333 222210001 1224678889998
Q ss_pred CCccccccccHHHHHhhchhhhccchhhccHHH
Q 007512 419 PDDLDTRLLRAMITKGLIEPISDVFVNLVNADY 451 (600)
Q Consensus 419 ~~~~~~~~~~~a~l~GlL~~~~~~~vn~vnA~~ 451 (600)
+|+++...|+ .+...|+.+......+..+..
T Consensus 273 -L~~dI~~~N~-~~~~~l~~~~~~l~~~~~~l~ 303 (667)
T PLN02712 273 -LYYGLFMYNK-NSLEMLERLDLAFEALRKQLF 303 (667)
T ss_pred -HHHHHHHhCH-HHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999 555678787777666666654
|
|
| >PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1 | Back alignment and domain information |
|---|
Probab=99.28 E-value=6.1e-13 Score=136.28 Aligned_cols=224 Identities=19% Similarity=0.137 Sum_probs=151.2
Q ss_pred HHHHhhcCC--CEEEEECCCC-ChhHHHHcCCcc--cCHHHHhccCCEEEEecCCCccccccccHhHhccCCCceEEEEc
Q 007512 212 VARRAKGLG--MHVIAHDPYA-PADRARAIGVDL--VSFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINV 286 (600)
Q Consensus 212 vA~~l~~~g--~~V~~~d~~~-~~~~a~~~g~~~--~~l~ell~~aDvV~l~~Pl~~~t~~li~~~~l~~mk~gailvNv 286 (600)
+|+.|+..| .+|++||++. ..+.+.+.|+.. .+-.+.+++||+|++|+|.. .+..++ ++....+++|++|+|+
T Consensus 1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~~~g~~~~~~~~~~~~~~~DlvvlavP~~-~~~~~l-~~~~~~~~~~~iv~Dv 78 (258)
T PF02153_consen 1 IALALRKAGPDVEVYGYDRDPETLEAALELGIIDEASTDIEAVEDADLVVLAVPVS-AIEDVL-EEIAPYLKPGAIVTDV 78 (258)
T ss_dssp HHHHHHHTTTTSEEEEE-SSHHHHHHHHHTTSSSEEESHHHHGGCCSEEEE-S-HH-HHHHHH-HHHHCGS-TTSEEEE-
T ss_pred ChHHHHhCCCCeEEEEEeCCHHHHHHHHHCCCeeeccCCHhHhcCCCEEEEcCCHH-HHHHHH-HHhhhhcCCCcEEEEe
Confidence 577787666 8999999987 556677888743 23257899999999999944 355555 3344458999999999
Q ss_pred cCCccccHHHHHHhHhc--CCceE---EEEeccCCCCCCCCCccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHc
Q 007512 287 ARGGVIDEEALVRALDS--GRVAQ---AALDVFTEEPPPADSKLVQHERVTVTPHLGASTMEAQEGVAIEIAEAVVGALK 361 (600)
Q Consensus 287 arg~ivde~aL~~aL~~--g~i~g---a~lDv~~~EP~~~~~~L~~~~nvilTPH~~~~t~ea~~~~~~~~~~~l~~~l~ 361 (600)
++-+---.+++.+.+.. .++++ +|-+..+.+ .++..||+..++++||+-... .+..+.+.++++
T Consensus 79 ~SvK~~~~~~~~~~~~~~~~~v~~HPM~G~e~~G~~--~a~~~lf~g~~~il~p~~~~~---------~~~~~~~~~l~~ 147 (258)
T PF02153_consen 79 GSVKAPIVEAMERLLPEGVRFVGGHPMAGPEKSGPE--AADADLFEGRNWILCPGEDTD---------PEALELVEELWE 147 (258)
T ss_dssp -S-CHHHHHHHHHHHTSSGEEEEEEESCSTSSSSGG--G-TTTTTTTSEEEEEECTTS----------HHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHhcCcccceeecCCCCCCccccch--hhcccccCCCeEEEeCCCCCh---------HHHHHHHHHHHH
Confidence 98766555666666662 23433 555555555 567899999999999986422 223356666666
Q ss_pred CCCCCccccCCCCChhhhhccc--chHHHHHHHH---------HHHHHHhcCCCCceEEEEEEeecCCCCccccccccHH
Q 007512 362 GELAATAVNAPMVPAEVLTELK--PFVELAEKLG---------RLAVQLVAGGSGVKTVKVSYASSRAPDDLDTRLLRAM 430 (600)
Q Consensus 362 g~~~~~~vn~~~i~~~~~~~~~--p~~~la~~lG---------~l~~qL~~g~~~~k~v~i~~~Gs~a~~~~~~~~~~~a 430 (600)
..+.+.....+..|+..+..++ ||+....... ....+++++ +|+++++++.+++. +|.+++..|+.
T Consensus 148 ~~Ga~~~~~~~eeHD~~~A~vshlpH~~a~al~~~~~~~~~~~~~~~~~a~~--~frd~tRia~~~p~-l~~~I~~~N~~ 224 (258)
T PF02153_consen 148 ALGARVVEMDAEEHDRIMAYVSHLPHLLASALANTLAELSSDDPDILRLAGG--GFRDMTRIASSDPE-LWADIFLSNPE 224 (258)
T ss_dssp HCT-EEEE--HHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHGTH--HHHHHHGGGGS-HH-HHHHHHHHTHH
T ss_pred HCCCEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHhhcch--hHHhhcccccCChH-HHHHHHHHCHH
Confidence 6666667777888899998888 8876554443 123467777 89999999999997 99999999999
Q ss_pred HHHhhchhhhccchhhccHHH
Q 007512 431 ITKGLIEPISDVFVNLVNADY 451 (600)
Q Consensus 431 ~l~GlL~~~~~~~vn~vnA~~ 451 (600)
.+...|+.+.....++.++..
T Consensus 225 ~~~~~l~~~~~~L~~l~~~l~ 245 (258)
T PF02153_consen 225 NLLEALDEFIKELNELREALE 245 (258)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 777778787776556655554
|
3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D. |
| >PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3 | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.8e-11 Score=115.77 Aligned_cols=104 Identities=33% Similarity=0.512 Sum_probs=77.8
Q ss_pred cceeccCCEEEEEecChhHHHHHHHhhcCCCEEEEECCCC-ChhHHHHcCCcccCHHHHhccCCEEEEecCCCccccccc
Q 007512 191 VGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYA-PADRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVL 269 (600)
Q Consensus 191 ~g~~l~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~-~~~~a~~~g~~~~~l~ell~~aDvV~l~~Pl~~~t~~li 269 (600)
....+.||++.|+|||.+|+.+|++|+++|++|++++.++ ..-+|...|++..+++++++++|+++.++- .+.++
T Consensus 17 t~~~l~Gk~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DPi~alqA~~dGf~v~~~~~a~~~adi~vtaTG----~~~vi 92 (162)
T PF00670_consen 17 TNLMLAGKRVVVIGYGKVGKGIARALRGLGARVTVTEIDPIRALQAAMDGFEVMTLEEALRDADIFVTATG----NKDVI 92 (162)
T ss_dssp H-S--TTSEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTT-EEE-HHHHTTT-SEEEE-SS----SSSSB
T ss_pred CceeeCCCEEEEeCCCcccHHHHHHHhhCCCEEEEEECChHHHHHhhhcCcEecCHHHHHhhCCEEEECCC----Ccccc
Confidence 3568999999999999999999999999999999999877 556677889998999999999999998865 46678
Q ss_pred cHhHhccCCCceEEEEccCCcc-ccHHHHH
Q 007512 270 NDETFGKMKKGVRIINVARGGV-IDEEALV 298 (600)
Q Consensus 270 ~~~~l~~mk~gailvNvarg~i-vde~aL~ 298 (600)
..+.|.+||+|+++.|++.-.. +|.+.|.
T Consensus 93 ~~e~~~~mkdgail~n~Gh~d~Eid~~~L~ 122 (162)
T PF00670_consen 93 TGEHFRQMKDGAILANAGHFDVEIDVDALE 122 (162)
T ss_dssp -HHHHHHS-TTEEEEESSSSTTSBTHHHHH
T ss_pred CHHHHHHhcCCeEEeccCcCceeEeecccc
Confidence 9999999999999999987443 3555543
|
3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C .... |
| >PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.1e-11 Score=116.28 Aligned_cols=113 Identities=25% Similarity=0.322 Sum_probs=86.5
Q ss_pred CEEEEEecChhHHHHHHHhhcCCCEEEEECCCC-ChhHHHHcCCcc-cCHHHHhccCCEEEEecCCCccccccccH-hHh
Q 007512 198 KTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYA-PADRARAIGVDL-VSFDEAIATADFISLHMPLTPATSKVLND-ETF 274 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~-~~~~a~~~g~~~-~~l~ell~~aDvV~l~~Pl~~~t~~li~~-~~l 274 (600)
++|||||+|.||+.+|++|.+.|++|.+||+.. ..+...+.|+.. .++.|++++||+|++|+|..++++.++.. ..+
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~g~~~~~s~~e~~~~~dvvi~~v~~~~~v~~v~~~~~i~ 81 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSPEKAEALAEAGAEVADSPAEAAEQADVVILCVPDDDAVEAVLFGENIL 81 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSHHHHHHHHHTTEEEESSHHHHHHHBSEEEE-SSSHHHHHHHHHCTTHG
T ss_pred CEEEEEchHHHHHHHHHHHHhcCCeEEeeccchhhhhhhHHhhhhhhhhhhhHhhcccceEeecccchhhhhhhhhhHHh
Confidence 589999999999999999999999999999876 334556667754 48999999999999999987777776532 267
Q ss_pred ccCCCceEEEEccCCccccHHHHHHhHhcCCceEEEEe
Q 007512 275 GKMKKGVRIINVARGGVIDEEALVRALDSGRVAQAALD 312 (600)
Q Consensus 275 ~~mk~gailvNvarg~ivde~aL~~aL~~g~i~ga~lD 312 (600)
..+++|.++||++....-....+.+.+.+..+ ..+|
T Consensus 82 ~~l~~g~iiid~sT~~p~~~~~~~~~~~~~g~--~~vd 117 (163)
T PF03446_consen 82 AGLRPGKIIIDMSTISPETSRELAERLAAKGV--RYVD 117 (163)
T ss_dssp GGS-TTEEEEE-SS--HHHHHHHHHHHHHTTE--EEEE
T ss_pred hccccceEEEecCCcchhhhhhhhhhhhhccc--eeee
Confidence 78999999999999888888888888876544 4444
|
1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A .... |
| >COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=99.16 E-value=1e-10 Score=120.49 Aligned_cols=113 Identities=26% Similarity=0.295 Sum_probs=97.2
Q ss_pred CEEEEEecChhHHHHHHHhhcCCCEEEEECCCCC--hhHHHHcCCccc-CHHHHhccCCEEEEecCCCcccccccc--Hh
Q 007512 198 KTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAP--ADRARAIGVDLV-SFDEAIATADFISLHMPLTPATSKVLN--DE 272 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~--~~~a~~~g~~~~-~l~ell~~aDvV~l~~Pl~~~t~~li~--~~ 272 (600)
.+|||||||.||..+|++|.+.|++|.+||+.+. .+.+.+.|.... +..|+.++||+|++|+|..++.+.++. ..
T Consensus 1 ~kIafIGLG~MG~pmA~~L~~aG~~v~v~~r~~~ka~~~~~~~Ga~~a~s~~eaa~~aDvVitmv~~~~~V~~V~~g~~g 80 (286)
T COG2084 1 MKIAFIGLGIMGSPMAANLLKAGHEVTVYNRTPEKAAELLAAAGATVAASPAEAAAEADVVITMLPDDAAVRAVLFGENG 80 (286)
T ss_pred CeEEEEcCchhhHHHHHHHHHCCCEEEEEeCChhhhhHHHHHcCCcccCCHHHHHHhCCEEEEecCCHHHHHHHHhCccc
Confidence 4899999999999999999999999999999873 345556687654 788999999999999999998888774 56
Q ss_pred HhccCCCceEEEEccCCccccHHHHHHhHhcCCceEEEEe
Q 007512 273 TFGKMKKGVRIINVARGGVIDEEALVRALDSGRVAQAALD 312 (600)
Q Consensus 273 ~l~~mk~gailvNvarg~ivde~aL~~aL~~g~i~ga~lD 312 (600)
.++.||+|.++||++.-.......+.+++++..+ -.+|
T Consensus 81 ~~~~~~~G~i~IDmSTisp~~a~~~a~~~~~~G~--~~lD 118 (286)
T COG2084 81 LLEGLKPGAIVIDMSTISPETARELAAALAAKGL--EFLD 118 (286)
T ss_pred hhhcCCCCCEEEECCCCCHHHHHHHHHHHHhcCC--cEEe
Confidence 8888999999999999998888889998988765 4445
|
|
| >PRK11559 garR tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.9e-10 Score=119.86 Aligned_cols=109 Identities=16% Similarity=0.281 Sum_probs=89.6
Q ss_pred CEEEEEecChhHHHHHHHhhcCCCEEEEECCCC-ChhHHHHcCCccc-CHHHHhccCCEEEEecCCCcccccccc--HhH
Q 007512 198 KTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYA-PADRARAIGVDLV-SFDEAIATADFISLHMPLTPATSKVLN--DET 273 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~-~~~~a~~~g~~~~-~l~ell~~aDvV~l~~Pl~~~t~~li~--~~~ 273 (600)
++|||||+|.||+.+|+.+...|++|++||++. ..+.+.+.|+... ++++++++||+|++|+|....++.++. ...
T Consensus 3 ~~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~~g~~~~~~~~e~~~~~d~vi~~vp~~~~~~~v~~~~~~~ 82 (296)
T PRK11559 3 MKVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNPEAVAEVIAAGAETASTAKAVAEQCDVIITMLPNSPHVKEVALGENGI 82 (296)
T ss_pred ceEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCeecCCHHHHHhcCCEEEEeCCCHHHHHHHHcCcchH
Confidence 589999999999999999999999999999986 3344556676543 789999999999999998777776653 235
Q ss_pred hccCCCceEEEEccCCccccHHHHHHhHhcCCc
Q 007512 274 FGKMKKGVRIINVARGGVIDEEALVRALDSGRV 306 (600)
Q Consensus 274 l~~mk~gailvNvarg~ivde~aL~~aL~~g~i 306 (600)
+..+++|.+++|+++......+++.+.+.+..+
T Consensus 83 ~~~~~~g~iiid~st~~~~~~~~l~~~~~~~g~ 115 (296)
T PRK11559 83 IEGAKPGTVVIDMSSIAPLASREIAAALKAKGI 115 (296)
T ss_pred hhcCCCCcEEEECCCCCHHHHHHHHHHHHHcCC
Confidence 677899999999999998777788887776544
|
|
| >TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase | Back alignment and domain information |
|---|
Probab=99.10 E-value=2.5e-10 Score=118.86 Aligned_cols=108 Identities=18% Similarity=0.260 Sum_probs=88.7
Q ss_pred EEEEEecChhHHHHHHHhhcCCCEEEEECCCC-ChhHHHHcCCc-ccCHHHHhccCCEEEEecCCCccccccc-c-HhHh
Q 007512 199 TLAVLGFGKVGSEVARRAKGLGMHVIAHDPYA-PADRARAIGVD-LVSFDEAIATADFISLHMPLTPATSKVL-N-DETF 274 (600)
Q Consensus 199 tiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~-~~~~a~~~g~~-~~~l~ell~~aDvV~l~~Pl~~~t~~li-~-~~~l 274 (600)
+|||||+|.||+.+|+++...|++|.+||++. ..+.+.+.|.. ..+..+++++||+|++|+|..+.++.++ . ...+
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~v~~~~~~~~ 80 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGPEVADELLAAGAVTAETARQVTEQADVIFTMVPDSPQVEEVAFGENGII 80 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCcccCCHHHHHhcCCEEEEecCCHHHHHHHHcCcchHh
Confidence 48999999999999999999999999999886 33445566664 3478899999999999999877776664 3 2356
Q ss_pred ccCCCceEEEEccCCccccHHHHHHhHhcCCc
Q 007512 275 GKMKKGVRIINVARGGVIDEEALVRALDSGRV 306 (600)
Q Consensus 275 ~~mk~gailvNvarg~ivde~aL~~aL~~g~i 306 (600)
..+++|+++||+++....+.+++.+.+++..+
T Consensus 81 ~~~~~g~iivd~st~~~~~~~~l~~~l~~~g~ 112 (291)
T TIGR01505 81 EGAKPGKTLVDMSSISPIESKRFAKAVKEKGI 112 (291)
T ss_pred hcCCCCCEEEECCCCCHHHHHHHHHHHHHcCC
Confidence 77899999999999998888888888887533
|
This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism. |
| >PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=6.1e-10 Score=116.41 Aligned_cols=109 Identities=18% Similarity=0.269 Sum_probs=90.0
Q ss_pred CEEEEEecChhHHHHHHHhhcCCCEEEEECCCCC-hhHHHHcCCcc-cCHHHHhccCCEEEEecCCCcccccccc--HhH
Q 007512 198 KTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAP-ADRARAIGVDL-VSFDEAIATADFISLHMPLTPATSKVLN--DET 273 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~-~~~a~~~g~~~-~~l~ell~~aDvV~l~~Pl~~~t~~li~--~~~ 273 (600)
++|||||+|.||..+|+.|...|++|.+||++.. .+.+.+.|... .+..+++++||+|++|+|....++.++. ...
T Consensus 2 ~~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~~~~~~~~~~g~~~~~s~~~~~~~aDvVi~~vp~~~~~~~vl~~~~~i 81 (296)
T PRK15461 2 AAIAFIGLGQMGSPMASNLLKQGHQLQVFDVNPQAVDALVDKGATPAASPAQAAAGAEFVITMLPNGDLVRSVLFGENGV 81 (296)
T ss_pred CeEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcCCcccCCHHHHHhcCCEEEEecCCHHHHHHHHcCcccH
Confidence 4799999999999999999999999999999873 34445556643 4788999999999999997766666653 235
Q ss_pred hccCCCceEEEEccCCccccHHHHHHhHhcCCc
Q 007512 274 FGKMKKGVRIINVARGGVIDEEALVRALDSGRV 306 (600)
Q Consensus 274 l~~mk~gailvNvarg~ivde~aL~~aL~~g~i 306 (600)
+..+++|.++||++++.+.....+.+.+.+..+
T Consensus 82 ~~~l~~g~lvid~sT~~p~~~~~l~~~l~~~g~ 114 (296)
T PRK15461 82 CEGLSRDALVIDMSTIHPLQTDKLIADMQAKGF 114 (296)
T ss_pred hhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCC
Confidence 667899999999999999888889888887655
|
|
| >cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy) | Back alignment and domain information |
|---|
Probab=99.04 E-value=7.7e-10 Score=119.97 Aligned_cols=104 Identities=28% Similarity=0.449 Sum_probs=89.9
Q ss_pred cceeccCCEEEEEecChhHHHHHHHhhcCCCEEEEECCCC-ChhHHHHcCCcccCHHHHhccCCEEEEecCCCccccccc
Q 007512 191 VGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYA-PADRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVL 269 (600)
Q Consensus 191 ~g~~l~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~-~~~~a~~~g~~~~~l~ell~~aDvV~l~~Pl~~~t~~li 269 (600)
.+..+.|++++|+|+|.||..+|++++++|++|+++|+++ ..+.+...|+..+++++.+..+|+|+.|+. +.+++
T Consensus 196 t~~~l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~~G~~~~~~~e~v~~aDVVI~atG----~~~~i 271 (413)
T cd00401 196 TDVMIAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAMEGYEVMTMEEAVKEGDIFVTTTG----NKDII 271 (413)
T ss_pred cCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHhcCCEEccHHHHHcCCCEEEECCC----CHHHH
Confidence 3567899999999999999999999999999999998876 456788889877788899999999998764 45678
Q ss_pred cHhHhccCCCceEEEEccCCcc-ccHHHHH
Q 007512 270 NDETFGKMKKGVRIINVARGGV-IDEEALV 298 (600)
Q Consensus 270 ~~~~l~~mk~gailvNvarg~i-vde~aL~ 298 (600)
+...+..||+|++++|+|+..+ +|...|.
T Consensus 272 ~~~~l~~mk~GgilvnvG~~~~eId~~~L~ 301 (413)
T cd00401 272 TGEHFEQMKDGAIVCNIGHFDVEIDVKGLK 301 (413)
T ss_pred HHHHHhcCCCCcEEEEeCCCCCccCHHHHH
Confidence 8888999999999999999875 6666664
|
The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+. |
| >PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.2e-09 Score=114.26 Aligned_cols=111 Identities=21% Similarity=0.348 Sum_probs=91.1
Q ss_pred EEEEEecChhHHHHHHHhhcCCCEEEEECCCCC-hhHHHHcCCcc-cCHHHHhcc---CCEEEEecCCCccccccccHhH
Q 007512 199 TLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAP-ADRARAIGVDL-VSFDEAIAT---ADFISLHMPLTPATSKVLNDET 273 (600)
Q Consensus 199 tiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~-~~~a~~~g~~~-~~l~ell~~---aDvV~l~~Pl~~~t~~li~~~~ 273 (600)
+|||||+|.||+.+|++|...|++|.+||++.. .+.+.+.|+.. .++++++++ +|+|++|+|..+.++.+++ ..
T Consensus 2 ~Ig~IGlG~mG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g~~~~~s~~~~~~~~~~advVi~~vp~~~~~~~v~~-~i 80 (299)
T PRK12490 2 KLGLIGLGKMGGNMAERLREDGHEVVGYDVNQEAVDVAGKLGITARHSLEELVSKLEAPRTIWVMVPAGEVTESVIK-DL 80 (299)
T ss_pred EEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHCCCeecCCHHHHHHhCCCCCEEEEEecCchHHHHHHH-HH
Confidence 799999999999999999999999999998763 34445567654 378888876 6999999997767777773 56
Q ss_pred hccCCCceEEEEccCCccccHHHHHHhHhcCCceEEEEe
Q 007512 274 FGKMKKGVRIINVARGGVIDEEALVRALDSGRVAQAALD 312 (600)
Q Consensus 274 l~~mk~gailvNvarg~ivde~aL~~aL~~g~i~ga~lD 312 (600)
+..+++|.++||+++....+..++.+.+.+..+ ..+|
T Consensus 81 ~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~--~~vd 117 (299)
T PRK12490 81 YPLLSPGDIVVDGGNSRYKDDLRRAEELAERGI--HYVD 117 (299)
T ss_pred hccCCCCCEEEECCCCCchhHHHHHHHHHHcCC--eEEe
Confidence 677899999999999999888889888877655 3466
|
|
| >PRK05479 ketol-acid reductoisomerase; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=8.5e-10 Score=116.25 Aligned_cols=122 Identities=25% Similarity=0.309 Sum_probs=90.9
Q ss_pred ceeccCCEEEEEecChhHHHHHHHhhcCCCEEEEECCCC--ChhHHHHcCCcccCHHHHhccCCEEEEecCCCccccccc
Q 007512 192 GVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYA--PADRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVL 269 (600)
Q Consensus 192 g~~l~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~--~~~~a~~~g~~~~~l~ell~~aDvV~l~~Pl~~~t~~li 269 (600)
-..|.|++|||||+|.||+++|+.|+.+|++|+++++.. ....+.+.|+...+.++++++||+|++++|.+.. ..++
T Consensus 12 ~~~L~gktIgIIG~GsmG~AlA~~L~~sG~~Vvv~~r~~~~s~~~A~~~G~~~~s~~eaa~~ADVVvLaVPd~~~-~~V~ 90 (330)
T PRK05479 12 LSLIKGKKVAIIGYGSQGHAHALNLRDSGVDVVVGLREGSKSWKKAEADGFEVLTVAEAAKWADVIMILLPDEVQ-AEVY 90 (330)
T ss_pred hhhhCCCEEEEEeeHHHHHHHHHHHHHCCCEEEEEECCchhhHHHHHHCCCeeCCHHHHHhcCCEEEEcCCHHHH-HHHH
Confidence 357899999999999999999999999999999876653 4455667788777999999999999999996654 6777
Q ss_pred cHhHhccCCCceEEEEccCCccccHHHHHHhHhcCCceEEEEeccCCCCCCCCC
Q 007512 270 NDETFGKMKKGVRIINVARGGVIDEEALVRALDSGRVAQAALDVFTEEPPPADS 323 (600)
Q Consensus 270 ~~~~l~~mk~gailvNvarg~ivde~aL~~aL~~g~i~ga~lDv~~~EP~~~~~ 323 (600)
+++.+..|++|++| -.+.|--+ ..+. ..-+...||+-..|-.+.+
T Consensus 91 ~~~I~~~Lk~g~iL-~~a~G~~i--~~~~------~~p~~~~~Vi~vaPn~Pg~ 135 (330)
T PRK05479 91 EEEIEPNLKEGAAL-AFAHGFNI--HFGQ------IVPPADVDVIMVAPKGPGH 135 (330)
T ss_pred HHHHHhcCCCCCEE-EECCCCCh--hhce------eccCCCCcEEEeCCCCCch
Confidence 67778889999988 55555221 1110 0113456777777654333
|
|
| >PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=98.93 E-value=4.5e-09 Score=110.11 Aligned_cols=112 Identities=21% Similarity=0.287 Sum_probs=91.0
Q ss_pred CEEEEEecChhHHHHHHHhhcCCCEEEEECCCC-ChhHHHHcCCccc-CHHHHhcc---CCEEEEecCCCccccccccHh
Q 007512 198 KTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYA-PADRARAIGVDLV-SFDEAIAT---ADFISLHMPLTPATSKVLNDE 272 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~-~~~~a~~~g~~~~-~l~ell~~---aDvV~l~~Pl~~~t~~li~~~ 272 (600)
++|||||+|.||+.+|++|...|.+|.+||++. ..+.+.+.|+... +++++++. +|+|++++|..+.+..++ ..
T Consensus 1 m~Ig~IGlG~MG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g~~~~~~~~e~~~~~~~~dvvi~~v~~~~~~~~v~-~~ 79 (301)
T PRK09599 1 MQLGMIGLGRMGGNMARRLLRGGHEVVGYDRNPEAVEALAEEGATGADSLEELVAKLPAPRVVWLMVPAGEITDATI-DE 79 (301)
T ss_pred CEEEEEcccHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHCCCeecCCHHHHHhhcCCCCEEEEEecCCcHHHHHH-HH
Confidence 379999999999999999999999999999986 3344556677654 78888876 699999999776677766 35
Q ss_pred HhccCCCceEEEEccCCccccHHHHHHhHhcCCceEEEEe
Q 007512 273 TFGKMKKGVRIINVARGGVIDEEALVRALDSGRVAQAALD 312 (600)
Q Consensus 273 ~l~~mk~gailvNvarg~ivde~aL~~aL~~g~i~ga~lD 312 (600)
.+..+++|.++||++++.......+.+.+++..+ ..+|
T Consensus 80 l~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~--~~~d 117 (301)
T PRK09599 80 LAPLLSPGDIVIDGGNSYYKDDIRRAELLAEKGI--HFVD 117 (301)
T ss_pred HHhhCCCCCEEEeCCCCChhHHHHHHHHHHHcCC--EEEe
Confidence 6677899999999999998888888888887665 3456
|
|
| >cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH) | Back alignment and domain information |
|---|
Probab=98.88 E-value=6.8e-09 Score=84.78 Aligned_cols=72 Identities=38% Similarity=0.669 Sum_probs=67.3
Q ss_pred EEEEecCCCCChhhHHhhhhcCCccccceEeeeecCCCcEEEEEEeCCCCcHHHHHHHhcCCCcceEEEeeC
Q 007512 529 ILCRQVDQPGMIGTVGSILGSENVNVSFMSVGRVAPRKHAVMAIGVDEQPRKETLKKIGDVPAIEEFVFLKL 600 (600)
Q Consensus 529 Liv~~~D~pG~Ia~V~~iL~~~~INIa~m~v~R~~~g~~al~~i~~D~~~~~~~l~~l~~~~~v~~v~~i~l 600 (600)
+++.+.|+||.+++++++|+++|+||.+|.+.+...++.+.+++.+|.+.+++++++|+++++|.++++++|
T Consensus 2 l~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~i~v~~~~~~~~~~~l~~~~~v~~v~~~~~ 73 (73)
T cd04902 2 LVVRNTDRPGVIGKVGTILGEAGINIAGMQVGRDEPGGEALMVLSVDEPVPDEVLEELRALPGILSAKVVEL 73 (73)
T ss_pred EEEEeCCCCCHHHHHHHHHHHcCcChhheEeeccCCCCEEEEEEEeCCCCCHHHHHHHHcCCCccEEEEEeC
Confidence 577899999999999999999999999999987767788999999999999999999999999999999875
|
The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden |
| >PRK15059 tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=6.8e-09 Score=108.37 Aligned_cols=108 Identities=19% Similarity=0.246 Sum_probs=87.0
Q ss_pred EEEEEecChhHHHHHHHhhcCCCEEEEECCCCChhHHHHcCCcc-cCHHHHhccCCEEEEecCCCccccccccH--hHhc
Q 007512 199 TLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPADRARAIGVDL-VSFDEAIATADFISLHMPLTPATSKVLND--ETFG 275 (600)
Q Consensus 199 tiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~~~~a~~~g~~~-~~l~ell~~aDvV~l~~Pl~~~t~~li~~--~~l~ 275 (600)
+|||||+|.||+.+|++|...|++|.+||+....+...+.|... .+..+++++||+|++|+|..+..+..+.. ..+.
T Consensus 2 ~Ig~IGlG~MG~~ma~~L~~~G~~v~v~~~~~~~~~~~~~g~~~~~s~~~~~~~advVi~~v~~~~~v~~v~~~~~g~~~ 81 (292)
T PRK15059 2 KLGFIGLGIMGTPMAINLARAGHQLHVTTIGPVADELLSLGAVSVETARQVTEASDIIFIMVPDTPQVEEVLFGENGCTK 81 (292)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCeEEEEeCCHhHHHHHHcCCeecCCHHHHHhcCCEEEEeCCChHHHHHHHcCCcchhc
Confidence 79999999999999999999999999999876444455667654 47888999999999999977666666532 2466
Q ss_pred cCCCceEEEEccCCccccHHHHHHhHhcCCc
Q 007512 276 KMKKGVRIINVARGGVIDEEALVRALDSGRV 306 (600)
Q Consensus 276 ~mk~gailvNvarg~ivde~aL~~aL~~g~i 306 (600)
.+++|.++||++....-....+.+.+.+..+
T Consensus 82 ~~~~g~ivvd~sT~~p~~~~~~~~~~~~~G~ 112 (292)
T PRK15059 82 ASLKGKTIVDMSSISPIETKRFARQVNELGG 112 (292)
T ss_pred cCCCCCEEEECCCCCHHHHHHHHHHHHHcCC
Confidence 6899999999999888777777777776533
|
|
| >PF03315 SDH_beta: Serine dehydratase beta chain; InterPro: IPR005131 L-serine dehydratase is found as a heterodimer of alpha and beta chain or as a fusion of the two chains in a single protein | Back alignment and domain information |
|---|
Probab=98.87 E-value=7.3e-10 Score=105.02 Aligned_cols=120 Identities=13% Similarity=0.002 Sum_probs=77.2
Q ss_pred hHHHHHHHHHHHHHHhcCC---CCceEEEEEEeecCCCCccccccccHHHHHhhchhhhccchhhc------------cH
Q 007512 385 FVELAEKLGRLAVQLVAGG---SGVKTVKVSYASSRAPDDLDTRLLRAMITKGLIEPISDVFVNLV------------NA 449 (600)
Q Consensus 385 ~~~la~~lG~l~~qL~~g~---~~~k~v~i~~~Gs~a~~~~~~~~~~~a~l~GlL~~~~~~~vn~v------------nA 449 (600)
|-.=.-|+|+.++|++.+. ..+.+|++.++||++ .++++|++|+|++.|||+. ..+++++. |.
T Consensus 16 HT~Gpmra~~~f~~~l~~~~~l~~~~~v~v~l~GSla-~Tg~GHgTD~Av~~GLlG~-~p~~~~~~~~~~~~~~~~~~~~ 93 (157)
T PF03315_consen 16 HTVGPMRAARRFRQLLGEQGLLPQVARVRVDLYGSLA-ATGKGHGTDRAVLAGLLGE-DPEDVDPDSIPERLERIREENR 93 (157)
T ss_dssp TTHHHHHHHHHHHHHHHHTT-TTT--EEEEEEEHHHH-HT-TTSSHHHHHHHHCTT---TTTS-GGGHHHHHHHHHHHTE
T ss_pred ccHHHHHHHHHHHHHHHhcCCCCCcEEEEEEeechhH-HhCCCcccchhheeccccc-CCcccchhhhHHHHHHhhcCCE
Confidence 3344568888888888762 148899999999999 9999999999999999954 55558888 33
Q ss_pred HHHHhhcCceEE------EEEeecCCCCCCCCceEEEEEeecccccccccCCCcEEEEEE-EEeCCceEEEEEcc
Q 007512 450 DYTAKQRGLRLT------EERILLDGSPESPLEFIQVQIANVESKFASAISESGEIKVEG-RVKDGVPHLTKVGS 517 (600)
Q Consensus 450 ~~~A~e~GI~v~------~~~~~~~~~~~~~~n~i~v~~~~~~~~~~~~~~~~~~~~v~G-sv~gG~~~I~~Idg 517 (600)
+.++.++.|.+. |...... ..|||++++++.+ ..++..+++++ ||+||.+++.++||
T Consensus 94 L~l~~~~~i~f~~~~dI~f~~~~~~---~~HPNtm~~~a~d--------~~g~~~~~~t~ySIGGGfI~~~~~~~ 157 (157)
T PF03315_consen 94 LRLAGEREIPFDPERDIIFHPEEFL---PFHPNTMRFEAYD--------ADGGELLEETYYSIGGGFIVIEEENG 157 (157)
T ss_dssp EEETTTEEEE--HHHHEEEETT------SS-SSEEEEEEE---------TTS-EEEEEEEEEETTTEEEETTTT-
T ss_pred EEECCCcccccccCCCeEEEeccCC---CCCCCEEEEEEEe--------CCCCEEEEEEEEEeCCeEEEEeeecC
Confidence 333333333222 2222211 2799999999974 13456789999 88899998877664
|
This enzyme catalyses the deamination of serine to form pyruvate and is part of the gluconeogenesis pathway.; GO: 0003941 L-serine ammonia-lyase activity, 0051539 4 iron, 4 sulfur cluster binding, 0006094 gluconeogenesis; PDB: 2IQQ_A 2IAF_A. |
| >PLN02350 phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.4e-08 Score=112.60 Aligned_cols=120 Identities=11% Similarity=0.110 Sum_probs=96.2
Q ss_pred EEEEEecChhHHHHHHHhhcCCCEEEEECCCCCh-hHHHH----cCCc----ccCHHHHhcc---CCEEEEecCCCcccc
Q 007512 199 TLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPA-DRARA----IGVD----LVSFDEAIAT---ADFISLHMPLTPATS 266 (600)
Q Consensus 199 tiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~~-~~a~~----~g~~----~~~l~ell~~---aDvV~l~~Pl~~~t~ 266 (600)
+|||||||.||+.+|++|...|++|.+||+.... +...+ .|.. ..+++++++. +|+|++|+|..+.++
T Consensus 8 ~IG~IGLG~MG~~mA~nL~~~G~~V~V~NRt~~k~~~l~~~~~~~Ga~~~~~a~s~~e~v~~l~~~dvIi~~v~~~~aV~ 87 (493)
T PLN02350 8 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGNLPLYGFKDPEDFVLSIQKPRSVIILVKAGAPVD 87 (493)
T ss_pred CEEEEeeHHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhhhcCCcccccCCCHHHHHhcCCCCCEEEEECCCcHHHH
Confidence 6999999999999999999999999999987632 22222 1532 3478888876 999999999888888
Q ss_pred ccccHhHhccCCCceEEEEccCCccccHHHHHHhHhcCCceEEEEeccCCCCC
Q 007512 267 KVLNDETFGKMKKGVRIINVARGGVIDEEALVRALDSGRVAQAALDVFTEEPP 319 (600)
Q Consensus 267 ~li~~~~l~~mk~gailvNvarg~ivde~aL~~aL~~g~i~ga~lDv~~~EP~ 319 (600)
.++ ...+..|++|.++||++....-+...+.+.+++..+.....=|++.++.
T Consensus 88 ~Vi-~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l~~~Gi~fldapVSGG~~g 139 (493)
T PLN02350 88 QTI-KALSEYMEPGDCIIDGGNEWYENTERRIKEAAEKGLLYLGMGVSGGEEG 139 (493)
T ss_pred HHH-HHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeCCCcCCHHH
Confidence 887 4577889999999999999888888888888887665455556776653
|
|
| >PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.86 E-value=3.9e-08 Score=102.31 Aligned_cols=174 Identities=20% Similarity=0.224 Sum_probs=111.5
Q ss_pred CEEEEEecChhHHHHHHHhhcCCCEEEEECCCCC-hhHHHH-------------------------cCCc-ccCHHHHhc
Q 007512 198 KTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAP-ADRARA-------------------------IGVD-LVSFDEAIA 250 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~-~~~a~~-------------------------~g~~-~~~l~ell~ 250 (600)
++|+|||.|.+|.++|..+...|.+|..||++.. .+.+.+ .++. ..++++.++
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~a~~ 83 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTDLAEAVK 83 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCCHHHHhc
Confidence 5899999999999999999988999999998752 222211 1111 236888899
Q ss_pred cCCEEEEecCCCccccccccHhHhccCCCceEEEEccCCccccHHHHHHhHhc-CCceEEEEeccCCCCCCCCCccccCC
Q 007512 251 TADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVIDEEALVRALDS-GRVAQAALDVFTEEPPPADSKLVQHE 329 (600)
Q Consensus 251 ~aDvV~l~~Pl~~~t~~li~~~~l~~mk~gailvNvarg~ivde~aL~~aL~~-g~i~ga~lDv~~~EP~~~~~~L~~~~ 329 (600)
.||+|+.|+|...+.+.-+-++....++++++|++.+++- ....+.+.++. .++ .+++.| +|.+..+
T Consensus 84 ~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~sntSt~--~~~~~~~~~~~~~r~--vg~Hf~--------~p~~~~~ 151 (287)
T PRK08293 84 DADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFATNSSTL--LPSQFAEATGRPEKF--LALHFA--------NEIWKNN 151 (287)
T ss_pred CCCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEEECcccC--CHHHHHhhcCCcccE--EEEcCC--------CCCCcCC
Confidence 9999999999655444443344555678999886544443 33445554443 234 334322 2344668
Q ss_pred cEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCccccCCCCChhhhhccc-chHHHHHHH
Q 007512 330 RVTVTPHLGASTMEAQEGVAIEIAEAVVGALKGELAATAVNAPMVPAEVLTELK-PFVELAEKL 392 (600)
Q Consensus 330 nvilTPH~~~~t~ea~~~~~~~~~~~l~~~l~g~~~~~~vn~~~i~~~~~~~~~-p~~~la~~l 392 (600)
.+.++|+...+ . ++.+.+.++++......++..+..+..+.+.+. +++..|.+|
T Consensus 152 lvevv~~~~t~-~--------~~~~~~~~~~~~~Gk~pv~v~~d~pgfi~nRi~~~~~~ea~~l 206 (287)
T PRK08293 152 TAEIMGHPGTD-P--------EVFDTVVAFAKAIGMVPIVLKKEQPGYILNSLLVPFLSAALAL 206 (287)
T ss_pred eEEEeCCCCCC-H--------HHHHHHHHHHHHcCCeEEEecCCCCCHhHHHHHHHHHHHHHHH
Confidence 88899976543 2 334555555555444444444566667777654 777777666
|
|
| >PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.83 E-value=5.9e-08 Score=102.41 Aligned_cols=174 Identities=24% Similarity=0.234 Sum_probs=112.2
Q ss_pred CEEEEEecChhHHHHHHHhhcCCCEEEEECCCCCh-hHHH-----------HcC---------Ccc-cCHHHHhccCCEE
Q 007512 198 KTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPA-DRAR-----------AIG---------VDL-VSFDEAIATADFI 255 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~~-~~a~-----------~~g---------~~~-~~l~ell~~aDvV 255 (600)
++|||||.|.||..+|..+...|++|..||+.... +.+. +.| +.. .++++.+++||+|
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l~~av~~aDlV 87 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVATIEACVADADFI 87 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCHHHHhcCCCEE
Confidence 68999999999999999999999999999997632 1111 111 122 3788999999999
Q ss_pred EEecCCCccccccccHhHhccCCCceEEEEccCCccccHHHHHHhHhc-CCceEEEEeccCCCCCCCCCccccCCcEEEc
Q 007512 256 SLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVIDEEALVRALDS-GRVAQAALDVFTEEPPPADSKLVQHERVTVT 334 (600)
Q Consensus 256 ~l~~Pl~~~t~~li~~~~l~~mk~gailvNvarg~ivde~aL~~aL~~-g~i~ga~lDv~~~EP~~~~~~L~~~~nvilT 334 (600)
+-|+|...+.++.+-++.-+.++++++ +.++..++ ...++.+.++. .++ .+++-|.+-+ .-||.| ++-+
T Consensus 88 iEavpE~l~vK~~lf~~l~~~~~~~aI-laSnTS~l-~~s~la~~~~~p~R~--~g~HffnP~~---~~pLVE---Vv~g 157 (321)
T PRK07066 88 QESAPEREALKLELHERISRAAKPDAI-IASSTSGL-LPTDFYARATHPERC--VVGHPFNPVY---LLPLVE---VLGG 157 (321)
T ss_pred EECCcCCHHHHHHHHHHHHHhCCCCeE-EEECCCcc-CHHHHHHhcCCcccE--EEEecCCccc---cCceEE---EeCC
Confidence 999999988888777777788999984 44444443 55666666654 455 4555553322 246664 3333
Q ss_pred CCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCccccCCCCChhhhhccc-chHHHHHHH
Q 007512 335 PHLGASTMEAQEGVAIEIAEAVVGALKGELAATAVNAPMVPAEVLTELK-PFVELAEKL 392 (600)
Q Consensus 335 PH~~~~t~ea~~~~~~~~~~~l~~~l~g~~~~~~vn~~~i~~~~~~~~~-p~~~la~~l 392 (600)
|+. + .++++.+.+++...+-..++-....+--+.+.++ +++..|-+|
T Consensus 158 ~~T---~--------~e~~~~~~~f~~~lGk~pV~v~kd~pGFi~NRl~~a~~~EA~~l 205 (321)
T PRK07066 158 ERT---A--------PEAVDAAMGIYRALGMRPLHVRKEVPGFIADRLLEALWREALHL 205 (321)
T ss_pred CCC---C--------HHHHHHHHHHHHHcCCEeEecCCCCccHHHHHHHHHHHHHHHHH
Confidence 332 2 2334555555554443333332344455666665 677666665
|
|
| >PLN02545 3-hydroxybutyryl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=98.81 E-value=6.8e-08 Score=100.82 Aligned_cols=106 Identities=26% Similarity=0.265 Sum_probs=76.6
Q ss_pred CEEEEEecChhHHHHHHHhhcCCCEEEEECCCCCh-hH-----------HHHcC-------------CcccCHHHHhccC
Q 007512 198 KTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPA-DR-----------ARAIG-------------VDLVSFDEAIATA 252 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~~-~~-----------a~~~g-------------~~~~~l~ell~~a 252 (600)
++|||||+|.||..+|+.+...|++|++||++... +. ..+.| ....+-.+.+++|
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~a 84 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTTNLEELRDA 84 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeCCHHHhCCC
Confidence 68999999999999999999999999999987632 21 11122 1222333568999
Q ss_pred CEEEEecCCCccccccccHhHhccCCCceEEE-EccCCccccHHHHHHhHhc-CCc
Q 007512 253 DFISLHMPLTPATSKVLNDETFGKMKKGVRII-NVARGGVIDEEALVRALDS-GRV 306 (600)
Q Consensus 253 DvV~l~~Pl~~~t~~li~~~~l~~mk~gailv-Nvarg~ivde~aL~~aL~~-g~i 306 (600)
|+|+.|+|..++.+..+-.+....++++++|+ |++.-.+ ..+.+.+.. .++
T Consensus 85 D~Vieav~e~~~~k~~v~~~l~~~~~~~~il~s~tS~i~~---~~l~~~~~~~~r~ 137 (295)
T PLN02545 85 DFIIEAIVESEDLKKKLFSELDRICKPSAILASNTSSISI---TRLASATQRPQQV 137 (295)
T ss_pred CEEEEcCccCHHHHHHHHHHHHhhCCCCcEEEECCCCCCH---HHHHhhcCCCcce
Confidence 99999999888888777666666789999886 7766543 344444443 344
|
|
| >TIGR00465 ilvC ketol-acid reductoisomerase | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.7e-08 Score=106.32 Aligned_cols=95 Identities=27% Similarity=0.366 Sum_probs=73.6
Q ss_pred ccCCEEEEEecChhHHHHHHHhhcCCCEEEEECCCC--ChhHHHHcCCcccCHHHHhccCCEEEEecCCCccccccccHh
Q 007512 195 LVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYA--PADRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVLNDE 272 (600)
Q Consensus 195 l~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~--~~~~a~~~g~~~~~l~ell~~aDvV~l~~Pl~~~t~~li~~~ 272 (600)
|.||+|||||+|+||+++|+.|+.+|++|+++++.. +.+.+.+.|+...+..+++++||+|++++|.... ...+.++
T Consensus 1 l~~kkIgiIG~G~mG~AiA~~L~~sG~~Viv~~~~~~~~~~~a~~~Gv~~~s~~ea~~~ADiVvLaVpp~~~-~~~v~~e 79 (314)
T TIGR00465 1 LKGKTVAIIGYGSQGHAQALNLRDSGLNVIVGLRKGGASWKKATEDGFKVGTVEEAIPQADLIMNLLPDEVQ-HEVYEAE 79 (314)
T ss_pred CCcCEEEEEeEcHHHHHHHHHHHHCCCeEEEEECcChhhHHHHHHCCCEECCHHHHHhcCCEEEEeCCcHhH-HHHHHHH
Confidence 579999999999999999999999999987654432 3345557788777888999999999999994422 3344455
Q ss_pred HhccCCCceEEEEccCCcc
Q 007512 273 TFGKMKKGVRIINVARGGV 291 (600)
Q Consensus 273 ~l~~mk~gailvNvarg~i 291 (600)
....|+++. +|.++.|=-
T Consensus 80 i~~~l~~g~-iVs~aaG~~ 97 (314)
T TIGR00465 80 IQPLLKEGK-TLGFSHGFN 97 (314)
T ss_pred HHhhCCCCc-EEEEeCCcc
Confidence 667788885 788877754
|
This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway |
| >TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=98.76 E-value=2.8e-08 Score=104.00 Aligned_cols=107 Identities=17% Similarity=0.258 Sum_probs=83.3
Q ss_pred CEEEEEecChhHHHHHHHhhcCCCEEEEECCCC-ChhHHHHcCCcc-cCHHHH---hccCCEEEEecCCCccccccccHh
Q 007512 198 KTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYA-PADRARAIGVDL-VSFDEA---IATADFISLHMPLTPATSKVLNDE 272 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~-~~~~a~~~g~~~-~~l~el---l~~aDvV~l~~Pl~~~t~~li~~~ 272 (600)
++|||||+|.||..+|+.|...|++|.+||++. ..+...+.|... .+++++ +.++|+|++|+|.. .++.++ ++
T Consensus 1 M~Ig~IGlG~mG~~la~~L~~~g~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~~~~~dvIi~~vp~~-~~~~v~-~~ 78 (298)
T TIGR00872 1 MQLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQDAVKAMKEDRTTGVANLRELSQRLSAPRVVWVMVPHG-IVDAVL-EE 78 (298)
T ss_pred CEEEEEcchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCcccCCHHHHHhhcCCCCEEEEEcCch-HHHHHH-HH
Confidence 379999999999999999999999999999886 334444555532 355554 46789999999966 677777 45
Q ss_pred HhccCCCceEEEEccCCccccHHHHHHhHhcCCc
Q 007512 273 TFGKMKKGVRIINVARGGVIDEEALVRALDSGRV 306 (600)
Q Consensus 273 ~l~~mk~gailvNvarg~ivde~aL~~aL~~g~i 306 (600)
....+++|.++||++.+...+...+.+.+++..+
T Consensus 79 l~~~l~~g~ivid~st~~~~~t~~~~~~~~~~g~ 112 (298)
T TIGR00872 79 LAPTLEKGDIVIDGGNSYYKDSLRRYKLLKEKGI 112 (298)
T ss_pred HHhhCCCCCEEEECCCCCcccHHHHHHHHHhcCC
Confidence 5677899999999998877777777777776544
|
This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle. |
| >PRK05225 ketol-acid reductoisomerase; Validated | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.1e-08 Score=110.46 Aligned_cols=99 Identities=20% Similarity=0.283 Sum_probs=80.1
Q ss_pred ccccccc-cc-eeccCCEEEEEecChhHHHHHHHhhcCCCEEE------EECCCC-ChhHHHHcCCcccCHHHHhccCCE
Q 007512 184 KWQRNKY-VG-VSLVGKTLAVLGFGKVGSEVARRAKGLGMHVI------AHDPYA-PADRARAIGVDLVSFDEAIATADF 254 (600)
Q Consensus 184 ~W~~~~~-~g-~~l~gktiGIIGlG~IG~~vA~~l~~~g~~V~------~~d~~~-~~~~a~~~g~~~~~l~ell~~aDv 254 (600)
-|.+..| .+ ..|+||||+|||+|.+|+.-|..|+..|++|+ +.|.+. +.+.|.+.|+...+++|++++||+
T Consensus 21 ~~~r~ef~~~~~~LkgKtIaIIGyGSqG~AqAlNLrdSGvnVvvglr~~~id~~~~s~~kA~~dGF~v~~~~Ea~~~ADv 100 (487)
T PRK05225 21 FMDRDEFADGASYLKGKKIVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATENGFKVGTYEELIPQADL 100 (487)
T ss_pred ecchhhccchhHHhCCCEEEEEccCHHHHHHhCCCccccceeEEeccccccccccchHHHHHhcCCccCCHHHHHHhCCE
Confidence 4877665 23 47999999999999999987777777788777 333333 455677789988899999999999
Q ss_pred EEEecCCCccccccccHhHhccCCCceEEE
Q 007512 255 ISLHMPLTPATSKVLNDETFGKMKKGVRII 284 (600)
Q Consensus 255 V~l~~Pl~~~t~~li~~~~l~~mk~gailv 284 (600)
|++.+|.+ . .+.+.++.+..||+|+.|.
T Consensus 101 VviLlPDt-~-q~~v~~~i~p~LK~Ga~L~ 128 (487)
T PRK05225 101 VINLTPDK-Q-HSDVVRAVQPLMKQGAALG 128 (487)
T ss_pred EEEcCChH-H-HHHHHHHHHhhCCCCCEEE
Confidence 99999988 3 7777799999999998875
|
|
| >PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.5e-07 Score=98.05 Aligned_cols=173 Identities=18% Similarity=0.146 Sum_probs=104.1
Q ss_pred CEEEEEecChhHHHHHHHhhcCCCEEEEECCCCC-hhHHHH-------cC-----------------Cc-ccCHHHHhcc
Q 007512 198 KTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAP-ADRARA-------IG-----------------VD-LVSFDEAIAT 251 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~-~~~a~~-------~g-----------------~~-~~~l~ell~~ 251 (600)
++|+|||+|.||+.+|..+...|++|++||++.. .+.+.+ .+ +. ..++++.+++
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~ 81 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKAAVAD 81 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHHHhhcC
Confidence 5899999999999999999988999999998762 222111 11 11 2367889999
Q ss_pred CCEEEEecCCCccccccccHhHhccCCCceEE-EEccCCccccHHHHHHhHhcCCceEEEEeccCCCCCCCCCccccCCc
Q 007512 252 ADFISLHMPLTPATSKVLNDETFGKMKKGVRI-INVARGGVIDEEALVRALDSGRVAQAALDVFTEEPPPADSKLVQHER 330 (600)
Q Consensus 252 aDvV~l~~Pl~~~t~~li~~~~l~~mk~gail-vNvarg~ivde~aL~~aL~~g~i~ga~lDv~~~EP~~~~~~L~~~~n 330 (600)
||+|+.|+|...+.+..+-.+....+++++++ +|++.-.+ ..+.+.++. .-.-.+++.+ .|. ...+ -
T Consensus 82 aD~Vi~avpe~~~~k~~~~~~l~~~~~~~~il~~~tSt~~~---~~l~~~~~~-~~r~~g~h~~--~Pv-~~~~-----L 149 (288)
T PRK09260 82 ADLVIEAVPEKLELKKAVFETADAHAPAECYIATNTSTMSP---TEIASFTKR-PERVIAMHFF--NPV-HKMK-----L 149 (288)
T ss_pred CCEEEEeccCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCH---HHHHhhcCC-cccEEEEecC--CCc-ccCc-----e
Confidence 99999999977665554434455668999877 78877544 345444432 2222566666 344 2233 4
Q ss_pred EEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCccccCCCCChhhhhccc-chHHHHHHH
Q 007512 331 VTVTPHLGASTMEAQEGVAIEIAEAVVGALKGELAATAVNAPMVPAEVLTELK-PFVELAEKL 392 (600)
Q Consensus 331 vilTPH~~~~t~ea~~~~~~~~~~~l~~~l~g~~~~~~vn~~~i~~~~~~~~~-p~~~la~~l 392 (600)
+.+.|+-.+. .+ +.+.+..+++.......+- ...+--+.+.+. +++..|.+|
T Consensus 150 ve~v~g~~t~-~~--------~~~~~~~~l~~lg~~~v~v-~d~~Gf~~nRl~~~~~~ea~~~ 202 (288)
T PRK09260 150 VELIRGLETS-DE--------TVQVAKEVAEQMGKETVVV-NEFPGFVTSRISALVGNEAFYM 202 (288)
T ss_pred EEEeCCCCCC-HH--------HHHHHHHHHHHcCCeEEEe-cCcccHHHHHHHHHHHHHHHHH
Confidence 4577764333 22 2344444444333222211 233344455443 677666555
|
|
| >PRK15040 L-serine dehydratase TdcG; Provisional | Back alignment and domain information |
|---|
Probab=98.73 E-value=5.8e-08 Score=105.16 Aligned_cols=151 Identities=12% Similarity=0.032 Sum_probs=103.1
Q ss_pred hHHHHHHHHHH-HHHHhcCC--CCceEEEEEEeecCCCCccccccccHHHHHhhchhhhccchhhccH---HHHHhhc--
Q 007512 385 FVELAEKLGRL-AVQLVAGG--SGVKTVKVSYASSRAPDDLDTRLLRAMITKGLIEPISDVFVNLVNA---DYTAKQR-- 456 (600)
Q Consensus 385 ~~~la~~lG~l-~~qL~~g~--~~~k~v~i~~~Gs~a~~~~~~~~~~~a~l~GlL~~~~~~~vn~vnA---~~~A~e~-- 456 (600)
|-.=+.|+|+. +++|.... +.+++++++++|||+ .|+++|++|+|++.||+ ++.++++++.++ +..++++
T Consensus 18 HTvGPmraa~~F~~~L~~~~~l~~~~~v~i~LyGSLA-~TGkGHgTD~Avl~GLl-G~~Pd~~~~~~~~~~~~~~~~~~~ 95 (454)
T PRK15040 18 HTVGPMNAGKSFIDRLESSGLLTATSHIVVDLYGSLS-LTGKGHATDVAIIMGLA-GNSPQDVVIDEIPAFIELVTRSGR 95 (454)
T ss_pred HHHHHHHHHHHHHHHHhhccccCCccEEEEEEEchhh-hcCCCccccHHHHHhhc-cCCcccCChhhhHHHHHHHHHcCc
Confidence 44445677765 66776520 168999999999999 99999999999999999 556667999998 6667776
Q ss_pred -----Cc---------eEEEEEeecCCCCCCCCceEEEEEeecccccccccCCCcEEEEEE-EEeCCceEEEEEcceEEE
Q 007512 457 -----GL---------RLTEERILLDGSPESPLEFIQVQIANVESKFASAISESGEIKVEG-RVKDGVPHLTKVGSFEVD 521 (600)
Q Consensus 457 -----GI---------~v~~~~~~~~~~~~~~~n~i~v~~~~~~~~~~~~~~~~~~~~v~G-sv~gG~~~I~~Idgf~v~ 521 (600)
|+ ++.|.....+ .|||++++++.+ .++..++.++ ||+||.+++-+ ++.-+
T Consensus 96 l~l~~G~~~i~f~~~~di~f~~~~lp----~HPN~m~~~a~~---------~~~~~~e~~~ySIGGGfI~~~~--~~~~~ 160 (454)
T PRK15040 96 LPVASGAHIVDFPVAKNIIFHPEMLP----RHENGMRITAWK---------GQEELLSKTYYSVGGGFIVEEE--HFGLS 160 (454)
T ss_pred cccCCCCccccCCCCCceEECCCCCC----CCCCeeEEEEEc---------CCCcEEEEEEEEcCCceeeecc--ccccc
Confidence 76 6777644332 699999999984 2335568899 88888887642 11111
Q ss_pred eecCccEEEEEecCCC---CChhhHHhhhhcCCccccceEee
Q 007512 522 VSLEGSIILCRQVDQP---GMIGTVGSILGSENVNVSFMSVG 560 (600)
Q Consensus 522 ~~g~~~~Liv~~~D~p---G~Ia~V~~iL~~~~INIa~m~v~ 560 (600)
- .. ..+.| -....+...-.+++++|..+-+.
T Consensus 161 ~-~~-------~~~~py~f~s~~ell~~c~~~~~~i~e~v~~ 194 (454)
T PRK15040 161 H-DV-------ETSVPYDFHSAGELLKMCDYNGLSISGLMMH 194 (454)
T ss_pred c-CC-------CCCCCcCCCCHHHHHHHHHHhCCCHHHHHHH
Confidence 0 00 11222 22344666667778888877553
|
|
| >COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.71 E-value=4.8e-08 Score=101.69 Aligned_cols=101 Identities=34% Similarity=0.479 Sum_probs=86.6
Q ss_pred eeccCCEEEEEecChhHHHHHHHhhcCCCEEEEECCCC-ChhHHHHcCCcccCHHHHhccCCEEEEecCCCccccccccH
Q 007512 193 VSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYA-PADRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVLND 271 (600)
Q Consensus 193 ~~l~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~-~~~~a~~~g~~~~~l~ell~~aDvV~l~~Pl~~~t~~li~~ 271 (600)
.-+.||++.|.|||..|+.+|.++++.|++|++..-.+ ..-+|.-.|++.+++++....+|+++.++- ++++|..
T Consensus 205 ~liaGK~vVV~GYG~vGrG~A~~~rg~GA~ViVtEvDPI~AleA~MdGf~V~~m~~Aa~~gDifiT~TG----nkdVi~~ 280 (420)
T COG0499 205 VLLAGKNVVVAGYGWVGRGIAMRLRGMGARVIVTEVDPIRALEAAMDGFRVMTMEEAAKTGDIFVTATG----NKDVIRK 280 (420)
T ss_pred eeecCceEEEecccccchHHHHHhhcCCCeEEEEecCchHHHHHhhcCcEEEEhHHhhhcCCEEEEccC----CcCccCH
Confidence 46899999999999999999999999999999975554 445577789999999999999999999765 6788999
Q ss_pred hHhccCCCceEEEEccCCcc-ccHHHH
Q 007512 272 ETFGKMKKGVRIINVARGGV-IDEEAL 297 (600)
Q Consensus 272 ~~l~~mk~gailvNvarg~i-vde~aL 297 (600)
+.|..||+|+++-|.|.=.+ +|...|
T Consensus 281 eh~~~MkDgaIl~N~GHFd~EI~~~~L 307 (420)
T COG0499 281 EHFEKMKDGAILANAGHFDVEIDVAGL 307 (420)
T ss_pred HHHHhccCCeEEecccccceeccHHHH
Confidence 99999999999999986444 355554
|
|
| >PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.9e-08 Score=94.93 Aligned_cols=90 Identities=30% Similarity=0.465 Sum_probs=67.4
Q ss_pred ccCCEEEEEecChhHHHHHHHhhcCCCEEEEECCCC--ChhHHHHcCCcccCHHHHhccCCEEEEecCCCccccccccHh
Q 007512 195 LVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYA--PADRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVLNDE 272 (600)
Q Consensus 195 l~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~--~~~~a~~~g~~~~~l~ell~~aDvV~l~~Pl~~~t~~li~~~ 272 (600)
|+||+|+|||||..|...|..||..|++|++-.+.. +.+.|++.|++..++.|+.++||+|++.+|. +....++.++
T Consensus 2 l~~k~IAViGyGsQG~a~AlNLrDSG~~V~Vglr~~s~s~~~A~~~Gf~v~~~~eAv~~aDvV~~L~PD-~~q~~vy~~~ 80 (165)
T PF07991_consen 2 LKGKTIAVIGYGSQGHAHALNLRDSGVNVIVGLREGSASWEKAKADGFEVMSVAEAVKKADVVMLLLPD-EVQPEVYEEE 80 (165)
T ss_dssp HCTSEEEEES-SHHHHHHHHHHHHCC-EEEEEE-TTCHHHHHHHHTT-ECCEHHHHHHC-SEEEE-S-H-HHHHHHHHHH
T ss_pred cCCCEEEEECCChHHHHHHHHHHhCCCCEEEEecCCCcCHHHHHHCCCeeccHHHHHhhCCEEEEeCCh-HHHHHHHHHH
Confidence 679999999999999999999999999998755443 5678999999999999999999999999993 3334455667
Q ss_pred HhccCCCceEEEE
Q 007512 273 TFGKMKKGVRIIN 285 (600)
Q Consensus 273 ~l~~mk~gailvN 285 (600)
....||+|..|+=
T Consensus 81 I~p~l~~G~~L~f 93 (165)
T PF07991_consen 81 IAPNLKPGATLVF 93 (165)
T ss_dssp HHHHS-TT-EEEE
T ss_pred HHhhCCCCCEEEe
Confidence 7778999987653
|
This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C. |
| >PLN02858 fructose-bisphosphate aldolase | Back alignment and domain information |
|---|
Probab=98.70 E-value=5e-08 Score=120.07 Aligned_cols=109 Identities=17% Similarity=0.191 Sum_probs=91.9
Q ss_pred CCEEEEEecChhHHHHHHHhhcCCCEEEEECCCCC-hhHHHHcCCcc-cCHHHHhccCCEEEEecCCCccccccc--cHh
Q 007512 197 GKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAP-ADRARAIGVDL-VSFDEAIATADFISLHMPLTPATSKVL--NDE 272 (600)
Q Consensus 197 gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~-~~~a~~~g~~~-~~l~ell~~aDvV~l~~Pl~~~t~~li--~~~ 272 (600)
.++|||||+|.||..||++|...|++|.+||+... .+...+.|... .+..++.++||+|++|+|..+..+.++ ...
T Consensus 4 ~~~IGfIGLG~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~~~Ga~~~~s~~e~a~~advVi~~l~~~~~v~~V~~g~~g 83 (1378)
T PLN02858 4 AGVVGFVGLDSLSFELASSLLRSGFKVQAFEISTPLMEKFCELGGHRCDSPAEAAKDAAALVVVLSHPDQVDDVFFGDEG 83 (1378)
T ss_pred CCeEEEEchhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEEcCChHHHHHHHhchhh
Confidence 56899999999999999999999999999999873 34455667754 489999999999999999888878776 345
Q ss_pred HhccCCCceEEEEccCCccccHHHHHHhHhcCC
Q 007512 273 TFGKMKKGVRIINVARGGVIDEEALVRALDSGR 305 (600)
Q Consensus 273 ~l~~mk~gailvNvarg~ivde~aL~~aL~~g~ 305 (600)
.+..+++|.++||++....-....+.+.+.+..
T Consensus 84 ~~~~l~~g~iivd~STi~p~~~~~la~~l~~~g 116 (1378)
T PLN02858 84 AAKGLQKGAVILIRSTILPLQLQKLEKKLTERK 116 (1378)
T ss_pred HHhcCCCcCEEEECCCCCHHHHHHHHHHHHhcC
Confidence 677899999999999988877888888887654
|
|
| >PRK11861 bifunctional prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.70 E-value=6.9e-09 Score=120.10 Aligned_cols=181 Identities=16% Similarity=0.080 Sum_probs=131.5
Q ss_pred EEEecCCCccccccccHhHhccCCCceEEEEccCCccccHHHHHHhHhc---CCceE---EEEeccCCCCCCCCCccccC
Q 007512 255 ISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVIDEEALVRALDS---GRVAQ---AALDVFTEEPPPADSKLVQH 328 (600)
Q Consensus 255 V~l~~Pl~~~t~~li~~~~l~~mk~gailvNvarg~ivde~aL~~aL~~---g~i~g---a~lDv~~~EP~~~~~~L~~~ 328 (600)
|++|+|.. .+..++. +....++++++|+|+++-+---.++..+.+.. .+|+| ||.++.+.+ .++..||++
T Consensus 1 vila~Pv~-~~~~~~~-~~~~~~~~~~~vtDv~SvK~~i~~~~~~~l~~~~~~fvg~HPMaG~e~~G~~--~a~~~Lf~~ 76 (673)
T PRK11861 1 VLLAAPVA-QTGPLLA-RIAPFLDASTIVTDAGSTKSDVVAAARAALGARIGQFVPGHPIAGRESSGVD--AALADLYVG 76 (673)
T ss_pred CEEEcCHH-HHHHHHH-HHhhhCCCCcEEEecCcccHHHHHHHHHhccccCCeEEecCCcCcCcchhhh--hhChhHhCC
Confidence 68999944 4555553 33456899999999997554333344444443 25655 999998888 778899999
Q ss_pred CcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCccccCCCCChhhhhccc--chHHHHHHHHHH--------HHH
Q 007512 329 ERVTVTPHLGASTMEAQEGVAIEIAEAVVGALKGELAATAVNAPMVPAEVLTELK--PFVELAEKLGRL--------AVQ 398 (600)
Q Consensus 329 ~nvilTPH~~~~t~ea~~~~~~~~~~~l~~~l~g~~~~~~vn~~~i~~~~~~~~~--p~~~la~~lG~l--------~~q 398 (600)
.++|+||.-... .++ .+.+.+++...+.+.....|..|++.+..++ ||+........+ +.+
T Consensus 77 ~~~il~p~~~~~-~~~--------~~~~~~l~~~~Ga~~~~~~~~~HD~~~A~iShlpH~~a~~l~~~~~~~~~~~~~~~ 147 (673)
T PRK11861 77 RNVVLCALPENA-PDA--------LARVEAMWRAARADVRAMSAEQHDRVFAAVSHLPHVLSFALVEQILGESDAELKFS 147 (673)
T ss_pred CeEEEecCCCCC-HHH--------HHHHHHHHHHcCCEEEECCHHHHHHHHHHHhhHHHHHHHHHHHHHhhccChhHHHH
Confidence 999999964322 222 2345555555566777778889999999998 888666555544 347
Q ss_pred HhcCCCCceEEEEEEeecCCCCccccccccHHHHHhhchhhhccchhhccHHH
Q 007512 399 LVAGGSGVKTVKVSYASSRAPDDLDTRLLRAMITKGLIEPISDVFVNLVNADY 451 (600)
Q Consensus 399 L~~g~~~~k~v~i~~~Gs~a~~~~~~~~~~~a~l~GlL~~~~~~~vn~vnA~~ 451 (600)
|++| +||++|+++.+++. +|.++...|+..+...|+.+..+...+.++..
T Consensus 148 ~a~~--gfrd~tRia~~~p~-lw~di~~~N~~~i~~~l~~~~~~l~~~~~~l~ 197 (673)
T PRK11861 148 YAAG--GFRDFTRIAASSPE-MWRDVCLANRAALLDELDAYTAVLARLRAAID 197 (673)
T ss_pred hccc--chhcccccccCCHH-HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888 89999999999998 99999999999887778777766555555554
|
|
| >TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase | Back alignment and domain information |
|---|
Probab=98.68 E-value=5e-08 Score=101.55 Aligned_cols=105 Identities=21% Similarity=0.250 Sum_probs=82.7
Q ss_pred EEecChhHHHHHHHhhcCCCEEEEECCCC-ChhHHHHcCCcc-cCHHHHhccCCEEEEecCCCcccccccc--HhHhccC
Q 007512 202 VLGFGKVGSEVARRAKGLGMHVIAHDPYA-PADRARAIGVDL-VSFDEAIATADFISLHMPLTPATSKVLN--DETFGKM 277 (600)
Q Consensus 202 IIGlG~IG~~vA~~l~~~g~~V~~~d~~~-~~~~a~~~g~~~-~~l~ell~~aDvV~l~~Pl~~~t~~li~--~~~l~~m 277 (600)
|||+|.||..+|++|...|++|.+||++. ..+...+.|+.. .++.+++++||+|++|+|..+..+.++. ...+..+
T Consensus 1 ~IGlG~mG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~~~~~~advVil~vp~~~~~~~v~~g~~~l~~~~ 80 (288)
T TIGR01692 1 FIGLGNMGGPMAANLLKAGHPVRVFDLFPDAVEEAVAAGAQAAASPAEAAEGADRVITMLPAGQHVISVYSGDEGILPKV 80 (288)
T ss_pred CCcccHhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEeCCChHHHHHHHcCcchHhhcC
Confidence 68999999999999999999999999886 334455667654 3789999999999999997666666652 3456678
Q ss_pred CCceEEEEccCCccccHHHHHHhHhcCCc
Q 007512 278 KKGVRIINVARGGVIDEEALVRALDSGRV 306 (600)
Q Consensus 278 k~gailvNvarg~ivde~aL~~aL~~g~i 306 (600)
++|.++||++....-....+.+.+.+..+
T Consensus 81 ~~g~~vid~st~~p~~~~~~~~~~~~~g~ 109 (288)
T TIGR01692 81 AKGSLLIDCSTIDPDSARKLAELAAAHGA 109 (288)
T ss_pred CCCCEEEECCCCCHHHHHHHHHHHHHcCC
Confidence 99999999997666556667676665433
|
This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446). |
| >PTZ00142 6-phosphogluconate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=6.2e-08 Score=107.25 Aligned_cols=119 Identities=13% Similarity=0.186 Sum_probs=92.9
Q ss_pred CEEEEEecChhHHHHHHHhhcCCCEEEEECCCCCh-hHHHH----cCCc---ccCHHHHhc---cCCEEEEecCCCcccc
Q 007512 198 KTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPA-DRARA----IGVD---LVSFDEAIA---TADFISLHMPLTPATS 266 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~~-~~a~~----~g~~---~~~l~ell~---~aDvV~l~~Pl~~~t~ 266 (600)
.+|||||+|.||+.+|++|...|++|.+||+.... +...+ .|.. ..++++++. ++|+|++++|..+.++
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~i~~~~s~~e~v~~l~~~d~Iil~v~~~~~v~ 81 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIASRGFKISVYNRTYEKTEEFVKKAKEGNTRVKGYHTLEELVNSLKKPRKVILLIKAGEAVD 81 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhhhhcCCcceecCCHHHHHhcCCCCCEEEEEeCChHHHH
Confidence 47999999999999999999999999999988633 22222 1432 347888886 5999999999888888
Q ss_pred ccccHhHhccCCCceEEEEccCCccccHHHHHHhHhcCCceEEEEeccCCC
Q 007512 267 KVLNDETFGKMKKGVRIINVARGGVIDEEALVRALDSGRVAQAALDVFTEE 317 (600)
Q Consensus 267 ~li~~~~l~~mk~gailvNvarg~ivde~aL~~aL~~g~i~ga~lDv~~~E 317 (600)
.++ +..+..+++|.+|||++.+..-+...+.+.+.+..+.....=|++.+
T Consensus 82 ~vi-~~l~~~L~~g~iIID~gn~~~~dt~~r~~~l~~~Gi~fldapVSGG~ 131 (470)
T PTZ00142 82 ETI-DNLLPLLEKGDIIIDGGNEWYLNTERRIKRCEEKGILYLGMGVSGGE 131 (470)
T ss_pred HHH-HHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEcCCCCCCH
Confidence 888 45677799999999999998888888888888876643333355544
|
|
| >PLN02858 fructose-bisphosphate aldolase | Back alignment and domain information |
|---|
Probab=98.66 E-value=7.6e-08 Score=118.54 Aligned_cols=107 Identities=20% Similarity=0.171 Sum_probs=89.3
Q ss_pred CCEEEEEecChhHHHHHHHhhcCCCEEEEECCCCC-hhHHHHcCCc-ccCHHHHhccCCEEEEecCCCccccccc--cHh
Q 007512 197 GKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAP-ADRARAIGVD-LVSFDEAIATADFISLHMPLTPATSKVL--NDE 272 (600)
Q Consensus 197 gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~-~~~a~~~g~~-~~~l~ell~~aDvV~l~~Pl~~~t~~li--~~~ 272 (600)
.++|||||+|.||..||++|...|++|.+||++.. .+...+.|.. ..+..+++++||+|++|+|..++++.++ +..
T Consensus 324 ~~~IGfIGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~Ga~~~~s~~e~~~~aDvVi~~V~~~~~v~~Vl~g~~g 403 (1378)
T PLN02858 324 VKRIGFIGLGAMGFGMASHLLKSNFSVCGYDVYKPTLVRFENAGGLAGNSPAEVAKDVDVLVIMVANEVQAENVLFGDLG 403 (1378)
T ss_pred CCeEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEecCChHHHHHHHhchhh
Confidence 47899999999999999999999999999998763 3344555654 3488999999999999999888888776 345
Q ss_pred HhccCCCceEEEEccCCccccHHHHHHhHhc
Q 007512 273 TFGKMKKGVRIINVARGGVIDEEALVRALDS 303 (600)
Q Consensus 273 ~l~~mk~gailvNvarg~ivde~aL~~aL~~ 303 (600)
.+..+++|.++||++....-....+.+.+.+
T Consensus 404 ~~~~l~~g~ivVd~STvsP~~~~~la~~l~~ 434 (1378)
T PLN02858 404 AVSALPAGASIVLSSTVSPGFVIQLERRLEN 434 (1378)
T ss_pred HHhcCCCCCEEEECCCCCHHHHHHHHHHHHh
Confidence 6788999999999999887777778777776
|
|
| >KOG0409 consensus Predicted dehydrogenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.66 E-value=7.3e-08 Score=98.53 Aligned_cols=111 Identities=14% Similarity=0.225 Sum_probs=90.5
Q ss_pred ccCCEEEEEecChhHHHHHHHhhcCCCEEEEECCCCC-hhHHHHcCCccc-CHHHHhccCCEEEEecCCCccccccccH-
Q 007512 195 LVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAP-ADRARAIGVDLV-SFDEAIATADFISLHMPLTPATSKVLND- 271 (600)
Q Consensus 195 l~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~-~~~a~~~g~~~~-~l~ell~~aDvV~l~~Pl~~~t~~li~~- 271 (600)
...++||+||+|.||..++..|-+.|++|++||++.+ .....+.|.+.. +..|+.+.||+|+.++|.....+.++..
T Consensus 33 ~s~~~iGFIGLG~MG~~M~~nLik~G~kVtV~dr~~~k~~~f~~~Ga~v~~sPaeVae~sDvvitmv~~~~~v~~v~~g~ 112 (327)
T KOG0409|consen 33 PSKTRIGFIGLGNMGSAMVSNLIKAGYKVTVYDRTKDKCKEFQEAGARVANSPAEVAEDSDVVITMVPNPKDVKDVLLGK 112 (327)
T ss_pred cccceeeEEeeccchHHHHHHHHHcCCEEEEEeCcHHHHHHHHHhchhhhCCHHHHHhhcCEEEEEcCChHhhHHHhcCC
Confidence 3578999999999999999999999999999999884 345677788654 7999999999999999988777776633
Q ss_pred -hHhccCCCceEE-EEccCCccccHHHHHHhHhcCC
Q 007512 272 -ETFGKMKKGVRI-INVARGGVIDEEALVRALDSGR 305 (600)
Q Consensus 272 -~~l~~mk~gail-vNvarg~ivde~aL~~aL~~g~ 305 (600)
..|..+++|... ||.+.-..--...+.+++....
T Consensus 113 ~Gvl~g~~~g~~~~vDmSTidp~~s~ei~~~i~~~~ 148 (327)
T KOG0409|consen 113 SGVLSGIRPGKKATVDMSTIDPDTSLEIAKAISNKG 148 (327)
T ss_pred CcceeeccCCCceEEeccccCHHHHHHHHHHHHhCC
Confidence 366667787776 8998877666777777777653
|
|
| >PRK15023 L-serine deaminase; Provisional | Back alignment and domain information |
|---|
Probab=98.59 E-value=2e-07 Score=101.11 Aligned_cols=150 Identities=14% Similarity=-0.026 Sum_probs=99.6
Q ss_pred hHHHHHHHHHH-HHHHhcC--CCCceEEEEEEeecCCCCccccccccHHHHHhhchhhhccch------------hhccH
Q 007512 385 FVELAEKLGRL-AVQLVAG--GSGVKTVKVSYASSRAPDDLDTRLLRAMITKGLIEPISDVFV------------NLVNA 449 (600)
Q Consensus 385 ~~~la~~lG~l-~~qL~~g--~~~~k~v~i~~~Gs~a~~~~~~~~~~~a~l~GlL~~~~~~~v------------n~vnA 449 (600)
|-.=+.|+|+. +++|... .+.+++++++++|||+ .|+++|++|+|++.||++ +.++++ +..++
T Consensus 18 HTvGPmraa~~F~~~L~~~~~l~~~~rv~v~LyGSLA-~TGkGHGTD~Avl~GL~G-~~Pd~~d~~~~~~~~~~~~~~~~ 95 (454)
T PRK15023 18 HTVGPMKAGKQFVDDLVEKGLLDSVTRVAVDVYGSLS-LTGKGHHTDIAIIMGLAG-NEPATVDIDSIPGFIRDVEERER 95 (454)
T ss_pred hHHHHHHHHHHHHHHHhhccccCCccEEEEEEEchhh-hcCCCccccHHHHhhhcc-CCCCCcChhhhHHHHHHHhhcCc
Confidence 44455677876 7888632 1268999999999999 999999999999999994 445556 56788
Q ss_pred HHHHhhcCceEEEE--------EeecCCCCCCCCceEEEEEeecccccccccCCCcEEEEEE-EEeCCceEEEEEcceEE
Q 007512 450 DYTAKQRGLRLTEE--------RILLDGSPESPLEFIQVQIANVESKFASAISESGEIKVEG-RVKDGVPHLTKVGSFEV 520 (600)
Q Consensus 450 ~~~A~e~GI~v~~~--------~~~~~~~~~~~~n~i~v~~~~~~~~~~~~~~~~~~~~v~G-sv~gG~~~I~~Idgf~v 520 (600)
+.+++++ +.+.|. .... ..|||++++++.+ .++...+.++ ||+||.+++-+=.+.+-
T Consensus 96 l~la~~~-~~i~F~~~~di~f~~~~l----p~HPN~m~f~a~~---------~~~~~~e~~~ySIGGGfI~~~~~~~~~~ 161 (454)
T PRK15023 96 LLLAQGR-HEVDFPRDNGMRFHNGNL----PLHENGMQIHAYN---------GDEVVYSKTYYSIGGGFIVDEEHFGQDA 161 (454)
T ss_pred cccCCCC-ceeecCcccceeECCCCC----CCCCCeeEEEEEe---------CCCcEEEEEEEEcCCceeeecccccccc
Confidence 8887664 666662 2222 2699999999984 2334568999 88889888753111110
Q ss_pred EeecCccEEEEEecCCCCC---hhhHHhhhhcCCccccceEee
Q 007512 521 DVSLEGSIILCRQVDQPGM---IGTVGSILGSENVNVSFMSVG 560 (600)
Q Consensus 521 ~~~g~~~~Liv~~~D~pG~---Ia~V~~iL~~~~INIa~m~v~ 560 (600)
.. ..+.|-. ...+...-.++++.|..+-+.
T Consensus 162 ---~~-------~~~~py~f~s~~ell~~c~~~~~~i~e~v~~ 194 (454)
T PRK15023 162 ---AN-------EVSVPYPFKSATELLAYCNETGYSLSGLAMQ 194 (454)
T ss_pred ---cC-------CCCCCcCCCCHHHHHHHHHHhCCCHHHHHHH
Confidence 01 1122322 334555556777777766553
|
|
| >PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.59 E-value=2.1e-07 Score=101.94 Aligned_cols=106 Identities=23% Similarity=0.195 Sum_probs=73.4
Q ss_pred CEEEEEecChhHHHHHHHhhcCCCEEEEECCCCChhHHHHcCCcc---cCHHHH---------------hccCCEEEEec
Q 007512 198 KTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPADRARAIGVDL---VSFDEA---------------IATADFISLHM 259 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~~~~a~~~g~~~---~~l~el---------------l~~aDvV~l~~ 259 (600)
++|+|||+|.||..+|..|...|++|++||++...-.+...|... ..++++ +++||+|++|+
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~l~~~~~~g~l~~~~~~~~aDvvii~v 83 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQKQVIGVDINQHAVDTINRGEIHIVEPDLDMVVKTAVEGGYLRATTTPEPADAFLIAV 83 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHHHHHHHHCCCCCcCCCCHHHHHHHHhhcCceeeecccccCCEEEEEc
Confidence 689999999999999999999999999999876433333333311 134444 34799999999
Q ss_pred CCC------ccccccc--cHhHhccCCCceEEEEccCCccccHHHHHHhHhc
Q 007512 260 PLT------PATSKVL--NDETFGKMKKGVRIINVARGGVIDEEALVRALDS 303 (600)
Q Consensus 260 Pl~------~~t~~li--~~~~l~~mk~gailvNvarg~ivde~aL~~aL~~ 303 (600)
|.. ++...+. -+.....+++|.++|+.+...+-..+.+...+.+
T Consensus 84 ptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pgtt~~~~~~l~~ 135 (415)
T PRK11064 84 PTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILESTSPVGATEQMAEWLAE 135 (415)
T ss_pred CCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCCCCCCHHHHHHHHHHH
Confidence 953 1112222 2345566899999999988665555555544443
|
|
| >PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.58 E-value=7e-07 Score=93.06 Aligned_cols=170 Identities=18% Similarity=0.208 Sum_probs=104.1
Q ss_pred CEEEEEecChhHHHHHHHhhcCCCEEEEECCCCCh-hH-----------HHHcCC-------------cc-cCHHHHhcc
Q 007512 198 KTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPA-DR-----------ARAIGV-------------DL-VSFDEAIAT 251 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~~-~~-----------a~~~g~-------------~~-~~l~ell~~ 251 (600)
++|||||.|.||+.+|..+...|++|+.||+.... +. ..+.|. .. .++ +.+++
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~-~~~~~ 84 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTDL-GDFAD 84 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCCH-HHhCC
Confidence 48999999999999999999899999999988732 22 222232 11 256 55899
Q ss_pred CCEEEEecCCCccccccccHhHhccC-CCceEEEEccCCccccHHHHHHhHhc-CCceEEEEeccCCCCCCCCCccccCC
Q 007512 252 ADFISLHMPLTPATSKVLNDETFGKM-KKGVRIINVARGGVIDEEALVRALDS-GRVAQAALDVFTEEPPPADSKLVQHE 329 (600)
Q Consensus 252 aDvV~l~~Pl~~~t~~li~~~~l~~m-k~gailvNvarg~ivde~aL~~aL~~-g~i~ga~lDv~~~EP~~~~~~L~~~~ 329 (600)
||+|+-|+|-..+.+..+-...-..+ +++++|.+.+++-.+. ++..++.. .++ .+++.|.+-| ..+|.
T Consensus 85 ~d~ViEav~E~~~~K~~l~~~l~~~~~~~~~il~snTS~~~~~--~la~~~~~~~r~--~g~hf~~P~~---~~~lv--- 154 (286)
T PRK07819 85 RQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLASNTSSIPIM--KLAAATKRPGRV--LGLHFFNPVP---VLPLV--- 154 (286)
T ss_pred CCEEEEecccCHHHHHHHHHHHHHhhCCCCcEEEECCCCCCHH--HHHhhcCCCccE--EEEecCCCcc---cCceE---
Confidence 99999999988887776655433444 8899998887765443 33333322 344 5666665332 23444
Q ss_pred cEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHc---CCCCCccccCCCCChhhhhcc-cchHHHHHHH
Q 007512 330 RVTVTPHLGASTMEAQEGVAIEIAEAVVGALK---GELAATAVNAPMVPAEVLTEL-KPFVELAEKL 392 (600)
Q Consensus 330 nvilTPH~~~~t~ea~~~~~~~~~~~l~~~l~---g~~~~~~vn~~~i~~~~~~~~-~p~~~la~~l 392 (600)
=++|+.+++ .++++.+..++. |+.+.. ++ ..+--..+.+ .|++..|.+|
T Consensus 155 --Elv~~~~T~---------~~~~~~~~~~~~~~lgk~pv~-v~--d~pGfi~nRi~~~~~~Ea~~l 207 (286)
T PRK07819 155 --ELVPTLVTS---------EATVARAEEFASDVLGKQVVR-AQ--DRSGFVVNALLVPYLLSAIRM 207 (286)
T ss_pred --EEeCCCCCC---------HHHHHHHHHHHHHhCCCCceE-ec--CCCChHHHHHHHHHHHHHHHH
Confidence 466665444 233445555533 222222 22 2223344443 4777776665
|
|
| >PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.58 E-value=7.3e-07 Score=92.95 Aligned_cols=129 Identities=19% Similarity=0.292 Sum_probs=83.9
Q ss_pred CEEEEEecChhHHHHHHHhhcCCCEEEEECCCCC-hhHHHH-----------cC-------------Ccc-cCHHHHhcc
Q 007512 198 KTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAP-ADRARA-----------IG-------------VDL-VSFDEAIAT 251 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~-~~~a~~-----------~g-------------~~~-~~l~ell~~ 251 (600)
++|+|||.|.||..+|..+...|++|.+||++.. .+.+.+ .| +.. .+++ .+++
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~ 83 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTATDLE-DLAD 83 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeCCHH-HhcC
Confidence 6899999999999999999999999999998752 222111 13 122 2454 5789
Q ss_pred CCEEEEecCCCccccccccHhHhccCCCceEEE-EccCCccccHHHHHHhHhc-CCceEEEEeccCCCCCCCCCccccCC
Q 007512 252 ADFISLHMPLTPATSKVLNDETFGKMKKGVRII-NVARGGVIDEEALVRALDS-GRVAQAALDVFTEEPPPADSKLVQHE 329 (600)
Q Consensus 252 aDvV~l~~Pl~~~t~~li~~~~l~~mk~gailv-Nvarg~ivde~aL~~aL~~-g~i~ga~lDv~~~EP~~~~~~L~~~~ 329 (600)
||+|+.|+|...+.+..+-++....++++++|+ |++.-.+ ..+.+.+.. .++ .+++.+. |.+ -.++.
T Consensus 84 aD~Vieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~---s~la~~~~~~~r~--~g~h~~~--p~~-~~~~v--- 152 (292)
T PRK07530 84 CDLVIEAATEDETVKRKIFAQLCPVLKPEAILATNTSSISI---TRLASATDRPERF--IGIHFMN--PVP-VMKLV--- 152 (292)
T ss_pred CCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCH---HHHHhhcCCcccE--EEeeccC--Ccc-cCceE---
Confidence 999999999776655444345556689999887 6655443 356555532 233 4555555 332 23443
Q ss_pred cEEEcCCCCCC
Q 007512 330 RVTVTPHLGAS 340 (600)
Q Consensus 330 nvilTPH~~~~ 340 (600)
-+.|+.+++
T Consensus 153 --ei~~g~~t~ 161 (292)
T PRK07530 153 --ELIRGIATD 161 (292)
T ss_pred --EEeCCCCCC
Confidence 356665443
|
|
| >cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria | Back alignment and domain information |
|---|
Probab=98.56 E-value=1.2e-07 Score=76.56 Aligned_cols=68 Identities=22% Similarity=0.424 Sum_probs=61.3
Q ss_pred EEEEecCCCCChhhHHhhhhcCCccccceEeeeecCCCcEEEEEEeCCCCcHHHHHHHhcCCCcceEEEe
Q 007512 529 ILCRQVDQPGMIGTVGSILGSENVNVSFMSVGRVAPRKHAVMAIGVDEQPRKETLKKIGDVPAIEEFVFL 598 (600)
Q Consensus 529 Liv~~~D~pG~Ia~V~~iL~~~~INIa~m~v~R~~~g~~al~~i~~D~~~~~~~l~~l~~~~~v~~v~~i 598 (600)
+++.+.|+||+++.+++.|+++++||.+|.... .++.+++.++++.+..++++++|+++++|.+++++
T Consensus 2 ~~~~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~--~~~~a~~~~~~~~~~l~~li~~l~~~~~V~~v~~~ 69 (69)
T cd04901 2 ILHIHKNVPGVLGQINTILAEHNINIAAQYLQT--RGEIGYVVIDIDSEVSEELLEALRAIPGTIRVRLL 69 (69)
T ss_pred EEEEecCCCcHHHHHHHHHHHcCCCHHHHhccC--CCCEEEEEEEcCCCCCHHHHHHHHcCCCeEEEEEC
Confidence 567899999999999999999999999997642 34889999999999899999999999999999875
|
The C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In Escherichia coli, the SerA 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. In the homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent- |
| >TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating | Back alignment and domain information |
|---|
Probab=98.55 E-value=2.2e-07 Score=102.99 Aligned_cols=118 Identities=20% Similarity=0.229 Sum_probs=87.8
Q ss_pred EEEEEecChhHHHHHHHhhcCCCEEEEECCCCC-hhHHHHc---C--Cc-ccCHHHHh---ccCCEEEEecCCCcccccc
Q 007512 199 TLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAP-ADRARAI---G--VD-LVSFDEAI---ATADFISLHMPLTPATSKV 268 (600)
Q Consensus 199 tiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~-~~~a~~~---g--~~-~~~l~ell---~~aDvV~l~~Pl~~~t~~l 268 (600)
.|||||+|.||+.+|++|...|++|.+||+... .+...+. | +. ..+++++. +++|+|++++|..+.+..+
T Consensus 1 ~IG~IGLG~MG~~mA~nL~~~G~~V~v~drt~~~~~~l~~~~~~g~~~~~~~s~~e~v~~l~~~dvIil~v~~~~~v~~V 80 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMADHGFTVSVYNRTPEKTDEFLAEHAKGKKIVGAYSIEEFVQSLERPRKIMLMVKAGAPVDAV 80 (467)
T ss_pred CEEEEeeHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHhhccCCCCceecCCHHHHHhhcCCCCEEEEECCCcHHHHHH
Confidence 389999999999999999999999999998763 2333333 2 32 23666655 5699999999977777777
Q ss_pred ccHhHhccCCCceEEEEccCCccccHHHHHHhHhcCCceEEEEeccCCC
Q 007512 269 LNDETFGKMKKGVRIINVARGGVIDEEALVRALDSGRVAQAALDVFTEE 317 (600)
Q Consensus 269 i~~~~l~~mk~gailvNvarg~ivde~aL~~aL~~g~i~ga~lDv~~~E 317 (600)
+ ...+..+++|.+|||++....-+.....+.+.+..+.....=|++.+
T Consensus 81 i-~~l~~~L~~g~iIID~gns~~~~t~~~~~~l~~~gi~fvdapVsGG~ 128 (467)
T TIGR00873 81 I-NQLLPLLEKGDIIIDGGNSHYPDTERRYKELKAKGILFVGSGVSGGE 128 (467)
T ss_pred H-HHHHhhCCCCCEEEECCCcCHHHHHHHHHHHHhcCCEEEcCCCCCCH
Confidence 7 45667789999999999888777777777787765643333344443
|
This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason. |
| >cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase | Back alignment and domain information |
|---|
Probab=98.55 E-value=3.8e-07 Score=90.14 Aligned_cols=108 Identities=31% Similarity=0.374 Sum_probs=79.9
Q ss_pred ceeccCCEEEEEecChhHHHHHHHhhcCCCEEEEECCCCCh-hHH-HHcCCcccCHHHHhc-cCCEEEEecCCCcccccc
Q 007512 192 GVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPA-DRA-RAIGVDLVSFDEAIA-TADFISLHMPLTPATSKV 268 (600)
Q Consensus 192 g~~l~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~~-~~a-~~~g~~~~~l~ell~-~aDvV~l~~Pl~~~t~~l 268 (600)
+.++.||+++|+|+|.+|+.+|+.|..+|++|+++|++... ... ...|...++.++++. +||+++.|.. .++
T Consensus 23 ~~~l~gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~~~~~~~~~~~g~~~v~~~~l~~~~~Dv~vp~A~-----~~~ 97 (200)
T cd01075 23 TDSLEGKTVAVQGLGKVGYKLAEHLLEEGAKLIVADINEEAVARAAELFGATVVAPEEIYSVDADVFAPCAL-----GGV 97 (200)
T ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHcCCEEEcchhhccccCCEEEeccc-----ccc
Confidence 56789999999999999999999999999999999987632 222 233666666677775 7999987765 357
Q ss_pred ccHhHhccCCCceEEEEccCCccccHHHHHHhHhcCCc
Q 007512 269 LNDETFGKMKKGVRIINVARGGVIDEEALVRALDSGRV 306 (600)
Q Consensus 269 i~~~~l~~mk~gailvNvarg~ivde~aL~~aL~~g~i 306 (600)
+++..+..|+. -+++.-+-+.+-+.++ .+.|++..|
T Consensus 98 I~~~~~~~l~~-~~v~~~AN~~~~~~~~-~~~L~~~Gi 133 (200)
T cd01075 98 INDDTIPQLKA-KAIAGAANNQLADPRH-GQMLHERGI 133 (200)
T ss_pred cCHHHHHHcCC-CEEEECCcCccCCHhH-HHHHHHCCC
Confidence 88888888874 4777777777654332 344555544
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc |
| >PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional | Back alignment and domain information |
|---|
Probab=98.53 E-value=4.5e-07 Score=99.49 Aligned_cols=134 Identities=17% Similarity=0.170 Sum_probs=87.5
Q ss_pred CEEEEEecChhHHHHHHHhhcCCCEEEEECCCCChhHHHHcCCc-----------------ccCHHHHhccCCEEEEecC
Q 007512 198 KTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPADRARAIGVD-----------------LVSFDEAIATADFISLHMP 260 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~~~~a~~~g~~-----------------~~~l~ell~~aDvV~l~~P 260 (600)
++|||||+|.||..+|..+.. |++|++||.+...-.....|.. ..+..+.+++||++++|+|
T Consensus 7 mkI~vIGlGyvGlpmA~~la~-~~~V~g~D~~~~~ve~l~~G~~~~~e~~~~~l~~~g~l~~t~~~~~~~~advvii~Vp 85 (425)
T PRK15182 7 VKIAIIGLGYVGLPLAVEFGK-SRQVVGFDVNKKRILELKNGVDVNLETTEEELREARYLKFTSEIEKIKECNFYIITVP 85 (425)
T ss_pred CeEEEECcCcchHHHHHHHhc-CCEEEEEeCCHHHHHHHHCcCCCCCCCCHHHHHhhCCeeEEeCHHHHcCCCEEEEEcC
Confidence 689999999999999999877 6999999988744333334432 2233457899999999999
Q ss_pred CCc------cccccc--cHhHhccCCCceEEEEccCCccccHHHHH-HhHhc--CCceE-EEEeccCCCCCCCC---Ccc
Q 007512 261 LTP------ATSKVL--NDETFGKMKKGVRIINVARGGVIDEEALV-RALDS--GRVAQ-AALDVFTEEPPPAD---SKL 325 (600)
Q Consensus 261 l~~------~t~~li--~~~~l~~mk~gailvNvarg~ivde~aL~-~aL~~--g~i~g-a~lDv~~~EP~~~~---~~L 325 (600)
... +...+. .+.....+++|.++|+.+.-.+-..+.++ ..+++ |.-.+ .-.=+|-+||.... ..+
T Consensus 86 tp~~~~~~~dl~~v~~a~~~i~~~l~~g~lVI~~STv~pgtt~~~~~~~l~~~~g~~~~~~~~~~~~PE~v~~G~a~~~~ 165 (425)
T PRK15182 86 TPINTYKQPDLTPLIKASETVGTVLNRGDIVVYESTVYPGCTEEECVPILARMSGMTFNQDFYVGYSPERINPGDKKHRL 165 (425)
T ss_pred CCCCCCCCcchHHHHHHHHHHHHhcCCCCEEEEecCCCCcchHHHHHHHHHhccCCCcCCCeeEeeCCCcCCCCcccccc
Confidence 542 223443 23455678999999999987765555443 33333 22111 11113556776433 456
Q ss_pred ccCCcEE
Q 007512 326 VQHERVT 332 (600)
Q Consensus 326 ~~~~nvi 332 (600)
...+.++
T Consensus 166 ~~~~riv 172 (425)
T PRK15182 166 TNIKKIT 172 (425)
T ss_pred cCCCeEE
Confidence 6667773
|
|
| >PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.53 E-value=2e-07 Score=97.98 Aligned_cols=83 Identities=24% Similarity=0.267 Sum_probs=67.5
Q ss_pred cCCEEEEEecChhHHHHHHHhhcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEecCCCccccccccHhHhc
Q 007512 196 VGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPADRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVLNDETFG 275 (600)
Q Consensus 196 ~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Pl~~~t~~li~~~~l~ 275 (600)
.+++|||||+|.+|+.+|++|...|++|.+||++.. .++++++++||+|++++|. +..+.+++.-...
T Consensus 3 ~~m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~~-----------~~~~~~~~~advvi~~vp~-~~~~~v~~~l~~~ 70 (308)
T PRK14619 3 QPKTIAILGAGAWGSTLAGLASANGHRVRVWSRRSG-----------LSLAAVLADADVIVSAVSM-KGVRPVAEQVQAL 70 (308)
T ss_pred CCCEEEEECccHHHHHHHHHHHHCCCEEEEEeCCCC-----------CCHHHHHhcCCEEEEECCh-HHHHHHHHHHHHh
Confidence 357899999999999999999999999999998742 3578889999999999996 4666666432122
Q ss_pred cCCCceEEEEccCCc
Q 007512 276 KMKKGVRIINVARGG 290 (600)
Q Consensus 276 ~mk~gailvNvarg~ 290 (600)
.+++++++|++++|-
T Consensus 71 ~~~~~~ivi~~s~gi 85 (308)
T PRK14619 71 NLPPETIIVTATKGL 85 (308)
T ss_pred cCCCCcEEEEeCCcc
Confidence 478899999998743
|
|
| >PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.52 E-value=1.7e-06 Score=91.00 Aligned_cols=104 Identities=20% Similarity=0.203 Sum_probs=68.5
Q ss_pred CEEEEEecChhHHHHHHHhhcCCCEEEEECCCCC-hhHH-----------HHcCC-------------c-ccCHHHHhcc
Q 007512 198 KTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAP-ADRA-----------RAIGV-------------D-LVSFDEAIAT 251 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~-~~~a-----------~~~g~-------------~-~~~l~ell~~ 251 (600)
++|+|||+|.||.++|..+...|++|++||+... .+.+ .+.|. . ..++++++++
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~~~~~~a~~~ 82 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARAGHEVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVTDSLADAVAD 82 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHCCCeeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEECcHHHhhCC
Confidence 4799999999999999999999999999998752 2221 13342 2 2378889999
Q ss_pred CCEEEEecCCCccccccccHhHhccCCCceEEEEccCCccccHHHHHHhHhc
Q 007512 252 ADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVIDEEALVRALDS 303 (600)
Q Consensus 252 aDvV~l~~Pl~~~t~~li~~~~l~~mk~gailvNvarg~ivde~aL~~aL~~ 303 (600)
||+|+.|+|...+.+..+-...-..+++++++....+ . .....+.+.+..
T Consensus 83 ad~Vi~avpe~~~~k~~~~~~l~~~~~~~~ii~ssts-~-~~~~~la~~~~~ 132 (308)
T PRK06129 83 ADYVQESAPENLELKRALFAELDALAPPHAILASSTS-A-LLASAFTEHLAG 132 (308)
T ss_pred CCEEEECCcCCHHHHHHHHHHHHHhCCCcceEEEeCC-C-CCHHHHHHhcCC
Confidence 9999999996644333332222223455555543333 3 235556666644
|
|
| >PLN02688 pyrroline-5-carboxylate reductase | Back alignment and domain information |
|---|
Probab=98.51 E-value=1.2e-06 Score=89.94 Aligned_cols=101 Identities=23% Similarity=0.282 Sum_probs=74.9
Q ss_pred CEEEEEecChhHHHHHHHhhcCCC----EEEEE-CCCC-ChhHHHHcCCccc-CHHHHhccCCEEEEecCCCcccccccc
Q 007512 198 KTLAVLGFGKVGSEVARRAKGLGM----HVIAH-DPYA-PADRARAIGVDLV-SFDEAIATADFISLHMPLTPATSKVLN 270 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~g~----~V~~~-d~~~-~~~~a~~~g~~~~-~l~ell~~aDvV~l~~Pl~~~t~~li~ 270 (600)
++|||||+|.||+++++.|...|+ +|++| |+.. ..+.+.+.|+... +..+++++||+|++|+| .+....++.
T Consensus 1 ~kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~~~~~~~~g~~~~~~~~e~~~~aDvVil~v~-~~~~~~vl~ 79 (266)
T PLN02688 1 FRVGFIGAGKMAEAIARGLVASGVVPPSRISTADDSNPARRDVFQSLGVKTAASNTEVVKSSDVIILAVK-PQVVKDVLT 79 (266)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCCCHHHHHHHHHcCCEEeCChHHHHhcCCEEEEEEC-cHHHHHHHH
Confidence 479999999999999999998787 89999 7765 2344555677543 77888999999999997 555666653
Q ss_pred HhHhccCCCceEEEEccCCccccHHHHHHhHh
Q 007512 271 DETFGKMKKGVRIINVARGGVIDEEALVRALD 302 (600)
Q Consensus 271 ~~~l~~mk~gailvNvarg~ivde~aL~~aL~ 302 (600)
.....++++.++|++..|- ..+.+.+.+.
T Consensus 80 -~l~~~~~~~~~iIs~~~g~--~~~~l~~~~~ 108 (266)
T PLN02688 80 -ELRPLLSKDKLLVSVAAGI--TLADLQEWAG 108 (266)
T ss_pred -HHHhhcCCCCEEEEecCCC--cHHHHHHHcC
Confidence 3445578899888886553 5555554443
|
|
| >PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.51 E-value=1.3e-06 Score=90.52 Aligned_cols=172 Identities=20% Similarity=0.216 Sum_probs=101.2
Q ss_pred CEEEEEecChhHHHHHHHhhcCCCEEEEECCCCChh------------HHHHcC-------------Cccc-CHHHHhcc
Q 007512 198 KTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPAD------------RARAIG-------------VDLV-SFDEAIAT 251 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~~~------------~a~~~g-------------~~~~-~l~ell~~ 251 (600)
++|+|||.|.||.++|..+...|++|++||++.... ...+.| +... +++ .+++
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~~~-~~~~ 82 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTDLD-DLKD 82 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHH-Hhcc
Confidence 579999999999999999999999999999876321 122233 1112 444 4799
Q ss_pred CCEEEEecCCCccccccccHhHhccCCCceEEEEccCCccccHHHHHHhHhc-CCceEEEEeccCCCCCCCCCccccCCc
Q 007512 252 ADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVIDEEALVRALDS-GRVAQAALDVFTEEPPPADSKLVQHER 330 (600)
Q Consensus 252 aDvV~l~~Pl~~~t~~li~~~~l~~mk~gailvNvarg~ivde~aL~~aL~~-g~i~ga~lDv~~~EP~~~~~~L~~~~n 330 (600)
||+|++|+|-..+.+.-+-++....++++++|+....| +....+.+.+.. .++ .+.+-+ .|.+ -.++.+
T Consensus 83 aDlVi~av~e~~~~k~~~~~~l~~~~~~~~il~s~ts~--~~~~~la~~~~~~~r~--ig~h~~--~P~~-~~~~ve--- 152 (282)
T PRK05808 83 ADLVIEAATENMDLKKKIFAQLDEIAKPEAILATNTSS--LSITELAAATKRPDKV--IGMHFF--NPVP-VMKLVE--- 152 (282)
T ss_pred CCeeeecccccHHHHHHHHHHHHhhCCCCcEEEECCCC--CCHHHHHHhhCCCcce--EEeecc--CCcc-cCccEE---
Confidence 99999999976665544444455568999988433333 344466666643 244 333333 3322 234553
Q ss_pred EEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCccccCCCCChhhhhcc-cchHHHHHHH
Q 007512 331 VTVTPHLGASTMEAQEGVAIEIAEAVVGALKGELAATAVNAPMVPAEVLTEL-KPFVELAEKL 392 (600)
Q Consensus 331 vilTPH~~~~t~ea~~~~~~~~~~~l~~~l~g~~~~~~vn~~~i~~~~~~~~-~p~~~la~~l 392 (600)
++|+-+.. .|. .+.+..+++..+....+- ...+-...+.+ .+++..|.+|
T Consensus 153 --v~~g~~t~-~e~--------~~~~~~l~~~lGk~pv~~-~d~~g~i~~Ri~~~~~~ea~~~ 203 (282)
T PRK05808 153 --IIRGLATS-DAT--------HEAVEALAKKIGKTPVEV-KNAPGFVVNRILIPMINEAIFV 203 (282)
T ss_pred --EeCCCCCC-HHH--------HHHHHHHHHHcCCeeEEe-cCccChHHHHHHHHHHHHHHHH
Confidence 66664333 333 244444554333222222 34444555544 3666666665
|
|
| >PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.5e-07 Score=81.34 Aligned_cols=88 Identities=28% Similarity=0.420 Sum_probs=64.2
Q ss_pred EEEEEecChhHHHHHHHhhcCC---CEEE-EECCCCC--hhHHHHcCCccc--CHHHHhccCCEEEEecCCCcccccccc
Q 007512 199 TLAVLGFGKVGSEVARRAKGLG---MHVI-AHDPYAP--ADRARAIGVDLV--SFDEAIATADFISLHMPLTPATSKVLN 270 (600)
Q Consensus 199 tiGIIGlG~IG~~vA~~l~~~g---~~V~-~~d~~~~--~~~a~~~g~~~~--~l~ell~~aDvV~l~~Pl~~~t~~li~ 270 (600)
||||||.|+||..+++.+...| .+|+ +++++.. .+.+.+.++... +..+++++||+|++|+|. .....++.
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~advvilav~p-~~~~~v~~ 79 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEYGVQATADDNEEAAQEADVVILAVKP-QQLPEVLS 79 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHCTTEEESEEHHHHHHHTSEEEE-S-G-GGHHHHHH
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhhccccccCChHHhhccCCEEEEEECH-HHHHHHHH
Confidence 7999999999999999999999 8999 5588763 234456666533 689999999999999993 33344433
Q ss_pred HhHhccCCCceEEEEccCC
Q 007512 271 DETFGKMKKGVRIINVARG 289 (600)
Q Consensus 271 ~~~l~~mk~gailvNvarg 289 (600)
.- ....++.++|++.-|
T Consensus 80 ~i--~~~~~~~~vis~~ag 96 (96)
T PF03807_consen 80 EI--PHLLKGKLVISIAAG 96 (96)
T ss_dssp HH--HHHHTTSEEEEESTT
T ss_pred HH--hhccCCCEEEEeCCC
Confidence 22 446788999988643
|
It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D .... |
| >KOG1370 consensus S-adenosylhomocysteine hydrolase [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.48 E-value=3.3e-07 Score=93.40 Aligned_cols=95 Identities=27% Similarity=0.426 Sum_probs=82.4
Q ss_pred eeccCCEEEEEecChhHHHHHHHhhcCCCEEEEECCCC-ChhHHHHcCCcccCHHHHhccCCEEEEecCCCccccccccH
Q 007512 193 VSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYA-PADRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVLND 271 (600)
Q Consensus 193 ~~l~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~-~~~~a~~~g~~~~~l~ell~~aDvV~l~~Pl~~~t~~li~~ 271 (600)
.-+.||.+.|-|||.+|+..|+.|++||.+|++..-.+ ...+|.-.|++.++++|+++++|+++.++- ++.+|..
T Consensus 210 vM~aGKv~Vv~GYGdVGKgCaqaLkg~g~~VivTEiDPI~ALQAaMeG~~V~tm~ea~~e~difVTtTG----c~dii~~ 285 (434)
T KOG1370|consen 210 VMIAGKVAVVCGYGDVGKGCAQALKGFGARVIVTEIDPICALQAAMEGYEVTTLEEAIREVDIFVTTTG----CKDIITG 285 (434)
T ss_pred heecccEEEEeccCccchhHHHHHhhcCcEEEEeccCchHHHHHHhhccEeeeHHHhhhcCCEEEEccC----CcchhhH
Confidence 45789999999999999999999999999999964443 455677789999999999999999998654 7888999
Q ss_pred hHhccCCCceEEEEccCCcc
Q 007512 272 ETFGKMKKGVRIINVARGGV 291 (600)
Q Consensus 272 ~~l~~mk~gailvNvarg~i 291 (600)
+.|.+||+++++-|+|.-.+
T Consensus 286 ~H~~~mk~d~IvCN~Ghfd~ 305 (434)
T KOG1370|consen 286 EHFDQMKNDAIVCNIGHFDT 305 (434)
T ss_pred HHHHhCcCCcEEeccccccc
Confidence 99999999999999987544
|
|
| >PRK06444 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.45 E-value=2e-08 Score=98.79 Aligned_cols=181 Identities=13% Similarity=0.168 Sum_probs=109.0
Q ss_pred CEEEEEec-ChhHHHHHHHhhcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEecCCCccccccccHhHhcc
Q 007512 198 KTLAVLGF-GKVGSEVARRAKGLGMHVIAHDPYAPADRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVLNDETFGK 276 (600)
Q Consensus 198 ktiGIIGl-G~IG~~vA~~l~~~g~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Pl~~~t~~li~~~~l~~ 276 (600)
.+++|||- |.+|+-+++.++..|+.|. +++||+|++|+|... +..++ ..
T Consensus 1 ~~~~iiG~~G~mG~~~~~~~~~~g~~v~------------------------~~~~DlVilavPv~~-~~~~i-----~~ 50 (197)
T PRK06444 1 MMEIIIGKNGRLGRVLCSILDDNGLGVY------------------------IKKADHAFLSVPIDA-ALNYI-----ES 50 (197)
T ss_pred CEEEEEecCCcHHHHHHHHHHhCCCEEE------------------------ECCCCEEEEeCCHHH-HHHHH-----HH
Confidence 37999988 9999999999999999985 368999999999543 33333 33
Q ss_pred CCCceEEEEccCCccccHHHHHHhHhcCCceEEEEe-ccCCCCCCCCCccccCCcEEEcCCCCCCcHHHHHHHHHHHHHH
Q 007512 277 MKKGVRIINVARGGVIDEEALVRALDSGRVAQAALD-VFTEEPPPADSKLVQHERVTVTPHLGASTMEAQEGVAIEIAEA 355 (600)
Q Consensus 277 mk~gailvNvarg~ivde~aL~~aL~~g~i~ga~lD-v~~~EP~~~~~~L~~~~nvilTPH~~~~t~ea~~~~~~~~~~~ 355 (600)
+. .+|+|+++-+-- +.++ ....+++ + -|+ |..+...|+ .++++++.. ...++ .+.
T Consensus 51 ~~--~~v~Dv~SvK~~----i~~~-~~~~vg~---HPMfG--p~~a~~~lf--~~~iv~~~~--~~~~~--------~~~ 106 (197)
T PRK06444 51 YD--NNFVEISSVKWP----FKKY-SGKIVSI---HPLFG--PMSYNDGVH--RTVIFINDI--SRDNY--------LNE 106 (197)
T ss_pred hC--CeEEeccccCHH----HHHh-cCCEEec---CCCCC--CCcCccccc--ceEEEECCC--CCHHH--------HHH
Confidence 33 379999975541 2221 1112221 0 012 223344566 466665431 22222 234
Q ss_pred HHHHHcCCCCCccccCCCCChhhhhccc--chHHHHHHHHHHHHHHhcCCCCceEEEEEE----eecCCCCccccccccH
Q 007512 356 VVGALKGELAATAVNAPMVPAEVLTELK--PFVELAEKLGRLAVQLVAGGSGVKTVKVSY----ASSRAPDDLDTRLLRA 429 (600)
Q Consensus 356 l~~~l~g~~~~~~vn~~~i~~~~~~~~~--p~~~la~~lG~l~~qL~~g~~~~k~v~i~~----~Gs~a~~~~~~~~~~~ 429 (600)
+.++++| .......|..|++.+..++ ||+. +..+..+-..+.++ +|++.++.. .+++. +|.++...|.
T Consensus 107 ~~~l~~G--~~~~~~t~eeHD~~~A~ishLpH~i-a~al~~~~~~~~t~--~fr~l~ria~~~~~~~p~-lw~dI~~~N~ 180 (197)
T PRK06444 107 INEMFRG--YHFVEMTADEHDLLMSEIMVKPYII-SMILKDIKSDIKTG--SFDKLLEVSEIKEKENWE-VFNDTIIYNP 180 (197)
T ss_pred HHHHHcC--CEEEEeCHHHHHHHHHHHHHHHHHH-HHHHccCCCCCCCc--cHHHHHHHHHHhccCCHH-HHHHHHHHCc
Confidence 5555664 4555667888888888887 7763 22222221244444 688777666 77776 8888877776
Q ss_pred HHHHhhchhhh
Q 007512 430 MITKGLIEPIS 440 (600)
Q Consensus 430 a~l~GlL~~~~ 440 (600)
-. +.+..+.
T Consensus 181 ~a--~~~~~~~ 189 (197)
T PRK06444 181 YT--NVINDLI 189 (197)
T ss_pred hH--HHHHHHH
Confidence 54 4454433
|
|
| >PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=98.42 E-value=5.9e-07 Score=93.49 Aligned_cols=81 Identities=19% Similarity=0.208 Sum_probs=68.5
Q ss_pred cceeccCCEEEEEecC-hhHHHHHHHhhcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEecCCCccccccc
Q 007512 191 VGVSLVGKTLAVLGFG-KVGSEVARRAKGLGMHVIAHDPYAPADRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVL 269 (600)
Q Consensus 191 ~g~~l~gktiGIIGlG-~IG~~vA~~l~~~g~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Pl~~~t~~li 269 (600)
.+.++.||+|+|||.| .+|+.+|.+|...|+.|..|++... ++.++.++||+|+++++.. +++
T Consensus 153 ~~i~l~Gk~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~~t~------------~l~e~~~~ADIVIsavg~~----~~v 216 (301)
T PRK14194 153 TCGDLTGKHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRST------------DAKALCRQADIVVAAVGRP----RLI 216 (301)
T ss_pred hCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEECCCCC------------CHHHHHhcCCEEEEecCCh----hcc
Confidence 4679999999999996 9999999999999999999986542 5889999999999999944 345
Q ss_pred cHhHhccCCCceEEEEccCCc
Q 007512 270 NDETFGKMKKGVRIINVARGG 290 (600)
Q Consensus 270 ~~~~l~~mk~gailvNvarg~ 290 (600)
.... +|+|+++||+|-..
T Consensus 217 ~~~~---ik~GaiVIDvgin~ 234 (301)
T PRK14194 217 DADW---LKPGAVVIDVGINR 234 (301)
T ss_pred cHhh---ccCCcEEEEecccc
Confidence 5443 79999999998543
|
|
| >PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.42 E-value=4.1e-06 Score=88.02 Aligned_cols=109 Identities=22% Similarity=0.327 Sum_probs=70.7
Q ss_pred CEEEEEecChhHHHHHHHhhcCCCEEEEECCCCC-hhHHHH-----cC--------------Ccc-cCHHHHhccCCEEE
Q 007512 198 KTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAP-ADRARA-----IG--------------VDL-VSFDEAIATADFIS 256 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~-~~~a~~-----~g--------------~~~-~~l~ell~~aDvV~ 256 (600)
++|+|||+|.||+++|..+...|++|++||++.. .+.+.+ .+ +.. .++++.+++||+|+
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~aDlVi 84 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGLQVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRMEAGLAAAVSGADLVI 84 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEEeCCHHHHhccCCEEE
Confidence 5899999999999999999988999999998762 222221 12 122 35778899999999
Q ss_pred EecCCCcccc-ccccHhHhccCCCceEEEEccCCccccHHHHHHhHhc-CCceEE
Q 007512 257 LHMPLTPATS-KVLNDETFGKMKKGVRIINVARGGVIDEEALVRALDS-GRVAQA 309 (600)
Q Consensus 257 l~~Pl~~~t~-~li~~~~l~~mk~gailvNvarg~ivde~aL~~aL~~-g~i~ga 309 (600)
+|+|...+.. .++ .+.-..++++++|+....|- ....+.+.+.. .++.|+
T Consensus 85 ~av~~~~~~~~~v~-~~l~~~~~~~~ii~s~tsg~--~~~~l~~~~~~~~~~ig~ 136 (311)
T PRK06130 85 EAVPEKLELKRDVF-ARLDGLCDPDTIFATNTSGL--PITAIAQAVTRPERFVGT 136 (311)
T ss_pred EeccCcHHHHHHHH-HHHHHhCCCCcEEEECCCCC--CHHHHHhhcCCcccEEEE
Confidence 9999654323 333 22223467777764333332 34566665543 344343
|
|
| >TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit | Back alignment and domain information |
|---|
Probab=98.42 E-value=7.4e-06 Score=91.20 Aligned_cols=179 Identities=17% Similarity=0.219 Sum_probs=113.9
Q ss_pred CceEEE-EcCCCCCCHHHHhccCCCceEEEEcCcccCccChhHHHhCCceeecCCCCC--h--------HHHHHHHHHHH
Q 007512 98 LCDALI-VRSGTKVNRDVFESSAGRLKVVGRAGVGIDNVDLAAATEFGCLVVNAPTAN--T--------VAAAEHGIALL 166 (600)
Q Consensus 98 ~~d~li-~~~~~~~~~~~l~~~~~~Lk~I~~~g~G~d~iD~~aa~~~GI~V~n~p~~~--~--------~~vAE~~l~ll 166 (600)
++|+++ ++ +.+.+.++.++++--+|+...-.-|.=-++++.++||.+..--... + .++++.+
T Consensus 64 ~adiIlkV~---~P~~~e~~~l~~g~tli~~l~p~~n~~ll~~l~~k~it~ia~E~vprisraq~~d~lssma~iA---- 136 (511)
T TIGR00561 64 QSDIILKVN---APSDAEIAELPAGKALVSFIWPAQNPELMEKLAAKNITVLAMDAVPRISRAQKLDALSSMANIA---- 136 (511)
T ss_pred cCCEEEEeC---CCCHHHHHhcCCCCEEEEEcCccCCHHHHHHHHHcCCEEEEeecccccccCCccCcchhhHHHH----
Confidence 578766 33 2344556666666677777665555444688889999887633211 1 1122222
Q ss_pred HHHHhchHHHHHHHHcCcccccc-ccceeccCCEEEEEecChhHHHHHHHhhcCCCEEEEECCCC-ChhHHHHcCCccc-
Q 007512 167 AAMARNVAQADASVKAGKWQRNK-YVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYA-PADRARAIGVDLV- 243 (600)
Q Consensus 167 l~~~R~i~~~~~~~~~g~W~~~~-~~g~~l~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~-~~~~a~~~g~~~~- 243 (600)
-.|-+.++.+.+ |++.... ..-..+.+.++.|+|.|.+|...++.++.+|.+|+++|.+. ..+.++++|.+.+
T Consensus 137 --Gy~Avi~Aa~~l--gr~~~g~~taag~vp~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~lGa~~v~ 212 (511)
T TIGR00561 137 --GYRAIIEAAHEF--GRFFTGQITAAGKVPPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSMGAEFLE 212 (511)
T ss_pred --HHHHHHHHHHHh--hhhcCCceecCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEe
Confidence 122222221111 1111100 00013457899999999999999999999999999999887 4566677776541
Q ss_pred -C--------------------------HHHHhccCCEEEEec--CCCccccccccHhHhccCCCceEEEEccC
Q 007512 244 -S--------------------------FDEAIATADFISLHM--PLTPATSKVLNDETFGKMKKGVRIINVAR 288 (600)
Q Consensus 244 -~--------------------------l~ell~~aDvV~l~~--Pl~~~t~~li~~~~l~~mk~gailvNvar 288 (600)
+ +.+.++++|+|+.++ |-. ....++.++.++.||+|+++||++-
T Consensus 213 v~~~e~g~~~~gYa~~~s~~~~~~~~~~~~e~~~~~DIVI~TalipG~-~aP~Lit~emv~~MKpGsvIVDlA~ 285 (511)
T TIGR00561 213 LDFKEEGGSGDGYAKVMSEEFIAAEMELFAAQAKEVDIIITTALIPGK-PAPKLITEEMVDSMKAGSVIVDLAA 285 (511)
T ss_pred ccccccccccccceeecCHHHHHHHHHHHHHHhCCCCEEEECcccCCC-CCCeeehHHHHhhCCCCCEEEEeee
Confidence 1 345678899998887 221 1346789999999999999999974
|
In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff. |
| >PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.41 E-value=5.2e-06 Score=86.58 Aligned_cols=115 Identities=22% Similarity=0.251 Sum_probs=77.1
Q ss_pred CEEEEEecChhHHHHHHHhhcCCCEEEEECCCCC-hhHHHH--------------cCC-------------ccc-CHHHH
Q 007512 198 KTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAP-ADRARA--------------IGV-------------DLV-SFDEA 248 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~-~~~a~~--------------~g~-------------~~~-~l~el 248 (600)
++|+|||.|.||..+|..+...|++|++||++.. .+.+.+ .|. ... ++ +.
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 82 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTSTSY-ES 82 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEeeCCH-HH
Confidence 6899999999999999999999999999998762 221111 111 111 34 56
Q ss_pred hccCCEEEEecCCCccccccccHhHhccCCCceEEEEccCCccccHHHHHHhHhc-CCceEEEEeccCCC
Q 007512 249 IATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVIDEEALVRALDS-GRVAQAALDVFTEE 317 (600)
Q Consensus 249 l~~aDvV~l~~Pl~~~t~~li~~~~l~~mk~gailvNvarg~ivde~aL~~aL~~-g~i~ga~lDv~~~E 317 (600)
+++||+|+.|+|...+.+.-+-++.-..++++++|+.+.+|- ....+.+.+.. .++ .+++-|.+-
T Consensus 83 ~~~aDlVieav~e~~~~k~~~~~~l~~~~~~~~il~S~tsg~--~~~~la~~~~~~~r~--ig~hf~~P~ 148 (291)
T PRK06035 83 LSDADFIVEAVPEKLDLKRKVFAELERNVSPETIIASNTSGI--MIAEIATALERKDRF--IGMHWFNPA 148 (291)
T ss_pred hCCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEEcCCCC--CHHHHHhhcCCcccE--EEEecCCCc
Confidence 799999999999665444433334445578999998877764 44556555543 344 455555443
|
|
| >TIGR00518 alaDH alanine dehydrogenase | Back alignment and domain information |
|---|
Probab=98.41 E-value=6.9e-07 Score=96.36 Aligned_cols=94 Identities=23% Similarity=0.372 Sum_probs=74.5
Q ss_pred eccCCEEEEEecChhHHHHHHHhhcCCCEEEEECCCCCh-hHH-HHcCCc-------ccCHHHHhccCCEEEEecCCC-c
Q 007512 194 SLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPA-DRA-RAIGVD-------LVSFDEAIATADFISLHMPLT-P 263 (600)
Q Consensus 194 ~l~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~~-~~a-~~~g~~-------~~~l~ell~~aDvV~l~~Pl~-~ 263 (600)
.+.++++.|+|.|.+|+.+++.++.+|++|.++|++... +.+ ...+.. ..++.+.++++|+|+.+++.+ .
T Consensus 164 ~l~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~g~~v~~~~~~~~~l~~~l~~aDvVI~a~~~~g~ 243 (370)
T TIGR00518 164 GVEPGDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQLDAEFGGRIHTRYSNAYEIEDAVKRADLLIGAVLIPGA 243 (370)
T ss_pred CCCCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhcCceeEeccCCHHHHHHHHccCCEEEEccccCCC
Confidence 367789999999999999999999999999999987522 222 223321 124677889999999998653 2
Q ss_pred cccccccHhHhccCCCceEEEEcc
Q 007512 264 ATSKVLNDETFGKMKKGVRIINVA 287 (600)
Q Consensus 264 ~t~~li~~~~l~~mk~gailvNva 287 (600)
.+..+++++.++.||++++|+|++
T Consensus 244 ~~p~lit~~~l~~mk~g~vIvDva 267 (370)
T TIGR00518 244 KAPKLVSNSLVAQMKPGAVIVDVA 267 (370)
T ss_pred CCCcCcCHHHHhcCCCCCEEEEEe
Confidence 356688999999999999999997
|
The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP. |
| >PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.41 E-value=3.1e-06 Score=94.99 Aligned_cols=116 Identities=24% Similarity=0.294 Sum_probs=83.2
Q ss_pred CEEEEEecChhHHHHHHHhhcCCCEEEEECCCCC-hhHH-----------HHcC-------------Ccc-cCHHHHhcc
Q 007512 198 KTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAP-ADRA-----------RAIG-------------VDL-VSFDEAIAT 251 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~-~~~a-----------~~~g-------------~~~-~~l~ell~~ 251 (600)
++|||||+|.||+.||..+...|++|+.||+... .+.+ .+.| +.. .++++ +++
T Consensus 8 ~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~-~~~ 86 (507)
T PRK08268 8 ATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPVEALAD-LAD 86 (507)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHH-hCC
Confidence 6899999999999999999988999999998763 2221 2334 222 35655 679
Q ss_pred CCEEEEecCCCccccccccHhHhccCCCceEE-EEccCCccccHHHHHHhHhc-CCceEEEEeccCCCCC
Q 007512 252 ADFISLHMPLTPATSKVLNDETFGKMKKGVRI-INVARGGVIDEEALVRALDS-GRVAQAALDVFTEEPP 319 (600)
Q Consensus 252 aDvV~l~~Pl~~~t~~li~~~~l~~mk~gail-vNvarg~ivde~aL~~aL~~-g~i~ga~lDv~~~EP~ 319 (600)
||+|+-|+|...+.+..+-.+.-..++++++| +|++.-.+ ..+..++.. .++ .|++.|.+-|.
T Consensus 87 aDlViEav~E~~~vK~~vf~~l~~~~~~~ailasntStl~i---~~la~~~~~p~r~--~G~hff~Pa~v 151 (507)
T PRK08268 87 CDLVVEAIVERLDVKQALFAQLEAIVSPDCILATNTSSLSI---TAIAAALKHPERV--AGLHFFNPVPL 151 (507)
T ss_pred CCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCH---HHHHhhcCCcccE--EEEeecCCccc
Confidence 99999999988887776655544457899999 69987665 245555443 344 56676764443
|
|
| >PRK12491 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=98.40 E-value=6.3e-07 Score=92.71 Aligned_cols=102 Identities=20% Similarity=0.346 Sum_probs=75.6
Q ss_pred CCEEEEEecChhHHHHHHHhhcCCC----EEEEECCCCC-hhHHH-HcCCccc-CHHHHhccCCEEEEecCCCccccccc
Q 007512 197 GKTLAVLGFGKVGSEVARRAKGLGM----HVIAHDPYAP-ADRAR-AIGVDLV-SFDEAIATADFISLHMPLTPATSKVL 269 (600)
Q Consensus 197 gktiGIIGlG~IG~~vA~~l~~~g~----~V~~~d~~~~-~~~a~-~~g~~~~-~l~ell~~aDvV~l~~Pl~~~t~~li 269 (600)
.++|||||+|+||+++++.|...|+ +|++||+... .+.+. +.|+... +..+++.+||+|++|+| ......++
T Consensus 2 ~~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~~~g~~~~~~~~e~~~~aDiIiLavk-P~~~~~vl 80 (272)
T PRK12491 2 NKQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASDKYGITITTNNNEVANSADILILSIK-PDLYSSVI 80 (272)
T ss_pred CCeEEEECccHHHHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHHhcCcEEeCCcHHHHhhCCEEEEEeC-hHHHHHHH
Confidence 3589999999999999999986553 7999998763 33333 3677543 67888999999999999 45556555
Q ss_pred cHhHhccCCCceEEEEccCCccccHHHHHHhHh
Q 007512 270 NDETFGKMKKGVRIINVARGGVIDEEALVRALD 302 (600)
Q Consensus 270 ~~~~l~~mk~gailvNvarg~ivde~aL~~aL~ 302 (600)
. +....++++.++|++.-|- +.+.|.+.+.
T Consensus 81 ~-~l~~~~~~~~lvISi~AGi--~i~~l~~~l~ 110 (272)
T PRK12491 81 N-QIKDQIKNDVIVVTIAAGK--SIKSTENEFD 110 (272)
T ss_pred H-HHHHhhcCCcEEEEeCCCC--cHHHHHHhcC
Confidence 3 3334468889999998775 4566655554
|
|
| >cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit | Back alignment and domain information |
|---|
Probab=98.39 E-value=1.3e-06 Score=70.19 Aligned_cols=71 Identities=30% Similarity=0.593 Sum_probs=62.1
Q ss_pred EEEEEecCCCCChhhHHhhhhcCCccccceEeeeecCCCcEEEEEEeCCCCcHHHHHHHhcCCCcceEEEe
Q 007512 528 IILCRQVDQPGMIGTVGSILGSENVNVSFMSVGRVAPRKHAVMAIGVDEQPRKETLKKIGDVPAIEEFVFL 598 (600)
Q Consensus 528 ~Liv~~~D~pG~Ia~V~~iL~~~~INIa~m~v~R~~~g~~al~~i~~D~~~~~~~l~~l~~~~~v~~v~~i 598 (600)
+|.+...|+||+++.++..|+++++||.+|.......++.+.+.+.+++...++++++|++++++.+++++
T Consensus 1 ~l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~i~i~v~~~~~~~~i~~l~~~~~v~~v~~~ 71 (71)
T cd04903 1 TLIVVHKDKPGAIAKVTSVLADHEINIAFMRVSRKEKGDQALMVIEVDQPIDEEVIEEIKKIPNIHQVILI 71 (71)
T ss_pred CEEEEeCCCCChHHHHHHHHHHcCcCeeeeEEEeccCCCeEEEEEEeCCCCCHHHHHHHHcCCCceEEEEC
Confidence 46778999999999999999999999999987653346678888999988788999999999999999875
|
The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains. |
| >cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH) | Back alignment and domain information |
|---|
Probab=98.39 E-value=1.2e-06 Score=70.20 Aligned_cols=70 Identities=34% Similarity=0.584 Sum_probs=62.6
Q ss_pred EEEEecCCCCChhhHHhhhhcCCccccceEeeeecCCCcEEEEEEeCCCCcHHHHHHHhcCCCcceEEEe
Q 007512 529 ILCRQVDQPGMIGTVGSILGSENVNVSFMSVGRVAPRKHAVMAIGVDEQPRKETLKKIGDVPAIEEFVFL 598 (600)
Q Consensus 529 Liv~~~D~pG~Ia~V~~iL~~~~INIa~m~v~R~~~g~~al~~i~~D~~~~~~~l~~l~~~~~v~~v~~i 598 (600)
+.+...|+||+++.|+++|+++++||.++...+...++.+.+.+.+++....+++++|+++++|.+++++
T Consensus 2 l~v~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~l~~~~~V~~v~~~ 71 (71)
T cd04879 2 LLIVHKDVPGVIGKVGTILGEHGINIAAMQVGRKEKGGIAYMVLDVDSPVPEEVLEELKALPGIIRVRLI 71 (71)
T ss_pred EEEEecCCCCHHHHHHHHHHhcCCCeeeEEEeccCCCCEEEEEEEcCCCCCHHHHHHHHcCCCeEEEEEC
Confidence 6778999999999999999999999999999765445788899999888777999999999999999874
|
ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active |
| >cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase | Back alignment and domain information |
|---|
Probab=98.38 E-value=2.1e-06 Score=80.42 Aligned_cols=107 Identities=21% Similarity=0.292 Sum_probs=76.2
Q ss_pred eeccCCEEEEEecChhHHHHHHHhhcCC-CEEEEECCCCCh-h-HHHHcCC-----cccCHHHHhccCCEEEEecCCCcc
Q 007512 193 VSLVGKTLAVLGFGKVGSEVARRAKGLG-MHVIAHDPYAPA-D-RARAIGV-----DLVSFDEAIATADFISLHMPLTPA 264 (600)
Q Consensus 193 ~~l~gktiGIIGlG~IG~~vA~~l~~~g-~~V~~~d~~~~~-~-~a~~~g~-----~~~~l~ell~~aDvV~l~~Pl~~~ 264 (600)
..+.+++++|+|.|.||+.+++.+...| .+|.++|++... + .+.+.+. ...+++++++++|+|++|+|....
T Consensus 15 ~~~~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvi~~~~~~~~ 94 (155)
T cd01065 15 IELKGKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGELGIAIAYLDLEELLAEADLIINTTPVGMK 94 (155)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhcccceeecchhhccccCCEEEeCcCCCCC
Confidence 3466899999999999999999999885 789999987632 2 2333342 344777889999999999996653
Q ss_pred -ccc-cccHhHhccCCCceEEEEccCCccccHHHHHHhHhcC
Q 007512 265 -TSK-VLNDETFGKMKKGVRIINVARGGVIDEEALVRALDSG 304 (600)
Q Consensus 265 -t~~-li~~~~l~~mk~gailvNvarg~ivde~aL~~aL~~g 304 (600)
... .+.. ..++++.+++|++..+... .+.+.+++.
T Consensus 95 ~~~~~~~~~---~~~~~~~~v~D~~~~~~~~--~l~~~~~~~ 131 (155)
T cd01065 95 PGDELPLPP---SLLKPGGVVYDVVYNPLET--PLLKEARAL 131 (155)
T ss_pred CCCCCCCCH---HHcCCCCEEEEcCcCCCCC--HHHHHHHHC
Confidence 112 2222 2368999999998765432 565555554
|
Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann |
| >PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated | Back alignment and domain information |
|---|
Probab=98.36 E-value=6.2e-06 Score=92.41 Aligned_cols=104 Identities=23% Similarity=0.254 Sum_probs=72.5
Q ss_pred CEEEEEecChhHHHHHHHhhcCCCEEEEECCCCCh-hHHH-------------------HcC-Ccc-cCHHHHhccCCEE
Q 007512 198 KTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPA-DRAR-------------------AIG-VDL-VSFDEAIATADFI 255 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~~-~~a~-------------------~~g-~~~-~~l~ell~~aDvV 255 (600)
++|||||+|.||+.+|..+...|++|.+||+.... +... ..| +.. .++++++++||+|
T Consensus 5 ~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~~~~~~ea~~~aD~V 84 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLLAGIDVAVFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTFCASLAEAVAGADWI 84 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEeeCCHHHHhcCCCEE
Confidence 58999999999999999999999999999997632 1111 112 333 3788999999999
Q ss_pred EEecCCCccccccccHhHhccCCCceEEEEccCCccccHHHHHHhHhc
Q 007512 256 SLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVIDEEALVRALDS 303 (600)
Q Consensus 256 ~l~~Pl~~~t~~li~~~~l~~mk~gailvNvarg~ivde~aL~~aL~~ 303 (600)
+.|+|...+.+..+-.+.-..++++++| +++..++ ....+.+.+..
T Consensus 85 ieavpe~~~vk~~l~~~l~~~~~~~~iI-~SsTsgi-~~s~l~~~~~~ 130 (495)
T PRK07531 85 QESVPERLDLKRRVLAEIDAAARPDALI-GSSTSGF-LPSDLQEGMTH 130 (495)
T ss_pred EEcCcCCHHHHHHHHHHHHhhCCCCcEE-EEcCCCC-CHHHHHhhcCC
Confidence 9999977655554333344457888754 5544443 34566665544
|
|
| >TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase | Back alignment and domain information |
|---|
Probab=98.35 E-value=3.3e-06 Score=92.35 Aligned_cols=101 Identities=24% Similarity=0.289 Sum_probs=70.3
Q ss_pred CEEEEEecChhHHHHHHHhhcCCCEEEEECCCCChhHHHH--------------------cC-Ccc-cCHHHHhccCCEE
Q 007512 198 KTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPADRARA--------------------IG-VDL-VSFDEAIATADFI 255 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~~~~a~~--------------------~g-~~~-~~l~ell~~aDvV 255 (600)
++|||||+|.+|..+|..|...|++|++||++...-.... .| +.. .++++++++||+|
T Consensus 1 mkI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~~~~~~~~~~~advv 80 (411)
T TIGR03026 1 MKIAVIGLGYVGLPLAALLADLGHEVTGVDIDQEKVDKLNKGKSPIYEPGLDELLAKALAAGRLRATTDYEDAIRDADVI 80 (411)
T ss_pred CEEEEECCCchhHHHHHHHHhcCCeEEEEECCHHHHHHhhcCCCCCCCCCHHHHHHHhhhcCCeEEECCHHHHHhhCCEE
Confidence 3799999999999999999999999999998763221111 23 222 3678889999999
Q ss_pred EEecCCCccc------cccc--cHhHhccCCCceEEEEccCCccccHHHHH
Q 007512 256 SLHMPLTPAT------SKVL--NDETFGKMKKGVRIINVARGGVIDEEALV 298 (600)
Q Consensus 256 ~l~~Pl~~~t------~~li--~~~~l~~mk~gailvNvarg~ivde~aL~ 298 (600)
++|+|..... ..+. -......+++|.++|+++.-.+=..+.+.
T Consensus 81 ii~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g~lvi~~STv~pgt~~~l~ 131 (411)
T TIGR03026 81 IICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVVLESTVPPGTTEEVV 131 (411)
T ss_pred EEEeCCCCCCCCCcChHHHHHHHHHHHHhcCCCCEEEEeCcCCCCchHHHH
Confidence 9999954321 1121 13345568999999999864443344454
|
All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively. |
| >PRK07679 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=98.28 E-value=2.4e-06 Score=88.60 Aligned_cols=102 Identities=14% Similarity=0.161 Sum_probs=73.0
Q ss_pred CCEEEEEecChhHHHHHHHhhcCC----CEEEEECCCCC-h-hH-HHHcCCcc-cCHHHHhccCCEEEEecCCCcccccc
Q 007512 197 GKTLAVLGFGKVGSEVARRAKGLG----MHVIAHDPYAP-A-DR-ARAIGVDL-VSFDEAIATADFISLHMPLTPATSKV 268 (600)
Q Consensus 197 gktiGIIGlG~IG~~vA~~l~~~g----~~V~~~d~~~~-~-~~-a~~~g~~~-~~l~ell~~aDvV~l~~Pl~~~t~~l 268 (600)
+++|||||+|.||+++|+.|...| .+|++||+... . +. ....|+.. .+..+++.+||+|++|+| .......
T Consensus 3 ~mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~v~~r~~~~~~~~l~~~~g~~~~~~~~e~~~~aDvVilav~-p~~~~~v 81 (279)
T PRK07679 3 IQNISFLGAGSIAEAIIGGLLHANVVKGEQITVSNRSNETRLQELHQKYGVKGTHNKKELLTDANILFLAMK-PKDVAEA 81 (279)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCCHHHHHHHHHhcCceEeCCHHHHHhcCCEEEEEeC-HHHHHHH
Confidence 468999999999999999998766 78999998652 1 22 23347654 367888999999999999 4444444
Q ss_pred ccHhHhccCCCceEEEEccCCccccHHHHHHhHh
Q 007512 269 LNDETFGKMKKGVRIINVARGGVIDEEALVRALD 302 (600)
Q Consensus 269 i~~~~l~~mk~gailvNvarg~ivde~aL~~aL~ 302 (600)
+ ......++++.+||++..|- ..+.+.+.+.
T Consensus 82 l-~~l~~~~~~~~liIs~~aGi--~~~~l~~~~~ 112 (279)
T PRK07679 82 L-IPFKEYIHNNQLIISLLAGV--STHSIRNLLQ 112 (279)
T ss_pred H-HHHHhhcCCCCEEEEECCCC--CHHHHHHHcC
Confidence 4 33344567899999986553 4555555443
|
|
| >TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC | Back alignment and domain information |
|---|
Probab=98.27 E-value=1.2e-05 Score=90.04 Aligned_cols=117 Identities=22% Similarity=0.230 Sum_probs=81.2
Q ss_pred CEEEEEecChhHHHHHHHhhcCCCEEEEECCCCC-hhH-----------HHHcCC-------------c-ccCHHHHhcc
Q 007512 198 KTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAP-ADR-----------ARAIGV-------------D-LVSFDEAIAT 251 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~-~~~-----------a~~~g~-------------~-~~~l~ell~~ 251 (600)
++|||||+|.||+.||..+...|++|..||++.. .+. ..+.|. . ..++++ +++
T Consensus 6 ~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~-l~~ 84 (503)
T TIGR02279 6 VTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPVTDLHA-LAD 84 (503)
T ss_pred cEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEeCCHHH-hCC
Confidence 5799999999999999999999999999998762 221 122231 1 235655 579
Q ss_pred CCEEEEecCCCccccccccHhHhccCCCceEEE-EccCCccccHHHHHHhHhcCCceEEEEeccCCCCC
Q 007512 252 ADFISLHMPLTPATSKVLNDETFGKMKKGVRII-NVARGGVIDEEALVRALDSGRVAQAALDVFTEEPP 319 (600)
Q Consensus 252 aDvV~l~~Pl~~~t~~li~~~~l~~mk~gailv-Nvarg~ivde~aL~~aL~~g~i~ga~lDv~~~EP~ 319 (600)
||+|+.|+|-..+.+..+-.+.-..++++++|. |++.-.+ ..+.+++.. .-...|++.|.+-|.
T Consensus 85 aDlVIEav~E~~~vK~~vf~~l~~~~~~~~IlasnTStl~i---~~iA~~~~~-p~r~~G~HFf~Papv 149 (503)
T TIGR02279 85 AGLVIEAIVENLEVKKALFAQLEELCPADTIIASNTSSLSI---TAIAAGLAR-PERVAGLHFFNPAPV 149 (503)
T ss_pred CCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCCCH---HHHHHhcCc-ccceEEEeccCcccc
Confidence 999999999887777665555445688888876 7765444 345555543 222367777765544
|
This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families. |
| >PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=98.24 E-value=2.6e-06 Score=88.16 Aligned_cols=81 Identities=21% Similarity=0.311 Sum_probs=69.1
Q ss_pred cceeccCCEEEEEecChh-HHHHHHHhhcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEecCCCccccccc
Q 007512 191 VGVSLVGKTLAVLGFGKV-GSEVARRAKGLGMHVIAHDPYAPADRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVL 269 (600)
Q Consensus 191 ~g~~l~gktiGIIGlG~I-G~~vA~~l~~~g~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Pl~~~t~~li 269 (600)
.+.++.||++.|||.|.+ |+.+|..|...|+.|..++.+. -++.+.+++||+|+.++| +.+++
T Consensus 152 ~~i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVt~~hs~t------------~~l~~~~~~ADIVV~avG----~~~~i 215 (285)
T PRK14189 152 IGIPLRGAHAVVIGRSNIVGKPMAMLLLQAGATVTICHSKT------------RDLAAHTRQADIVVAAVG----KRNVL 215 (285)
T ss_pred cCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEecCCC------------CCHHHHhhhCCEEEEcCC----CcCcc
Confidence 467999999999999999 9999999999999999886432 257889999999999999 35678
Q ss_pred cHhHhccCCCceEEEEccCCc
Q 007512 270 NDETFGKMKKGVRIINVARGG 290 (600)
Q Consensus 270 ~~~~l~~mk~gailvNvarg~ 290 (600)
+. +.+|+|+++||+|-..
T Consensus 216 ~~---~~ik~gavVIDVGin~ 233 (285)
T PRK14189 216 TA---DMVKPGATVIDVGMNR 233 (285)
T ss_pred CH---HHcCCCCEEEEccccc
Confidence 76 4479999999998544
|
|
| >PRK13302 putative L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.24 E-value=3e-06 Score=87.60 Aligned_cols=103 Identities=17% Similarity=0.261 Sum_probs=73.9
Q ss_pred CCEEEEEecChhHHHHHHHhhc--CCCEEE-EECCCCCh--hHHHHcCC--cccCHHHHhccCCEEEEecCCCccccccc
Q 007512 197 GKTLAVLGFGKVGSEVARRAKG--LGMHVI-AHDPYAPA--DRARAIGV--DLVSFDEAIATADFISLHMPLTPATSKVL 269 (600)
Q Consensus 197 gktiGIIGlG~IG~~vA~~l~~--~g~~V~-~~d~~~~~--~~a~~~g~--~~~~l~ell~~aDvV~l~~Pl~~~t~~li 269 (600)
..+|||||+|.||+.+++.+.. .++++. +||+.... +.+...|. .+.+++++++++|+|++|+|... ..-+
T Consensus 6 ~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~~~~a~~~a~~~g~~~~~~~~eell~~~D~Vvi~tp~~~--h~e~ 83 (271)
T PRK13302 6 ELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRDPQRHADFIWGLRRPPPVVPLDQLATHADIVVEAAPASV--LRAI 83 (271)
T ss_pred eeEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCCHHHHHHHHHhcCCCcccCCHHHHhcCCCEEEECCCcHH--HHHH
Confidence 4789999999999999999985 488886 57876532 23344453 24589999999999999999442 2112
Q ss_pred cHhHhccCCCceEEEEccCCccccHHHHHHhHhcC
Q 007512 270 NDETFGKMKKGVRIINVARGGVIDEEALVRALDSG 304 (600)
Q Consensus 270 ~~~~l~~mk~gailvNvarg~ivde~aL~~aL~~g 304 (600)
. ...++.|.-++..+.+.+.+.++|.++.+++
T Consensus 84 ~---~~aL~aGk~Vi~~s~gal~~~~~L~~~A~~~ 115 (271)
T PRK13302 84 V---EPVLAAGKKAIVLSVGALLRNEDLIDLARQN 115 (271)
T ss_pred H---HHHHHcCCcEEEecchhHHhHHHHHHHHHHc
Confidence 2 2334666666667788877788888877664
|
|
| >PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold | Back alignment and domain information |
|---|
Probab=98.22 E-value=1.6e-06 Score=69.01 Aligned_cols=65 Identities=22% Similarity=0.331 Sum_probs=56.5
Q ss_pred cEEEEEecCCCCChhhHHhhhhcCCccccceEeeeecC-CCcEEEEEEeCCCCcHHHHHHHhcCCC
Q 007512 527 SIILCRQVDQPGMIGTVGSILGSENVNVSFMSVGRVAP-RKHAVMAIGVDEQPRKETLKKIGDVPA 591 (600)
Q Consensus 527 ~~Liv~~~D~pG~Ia~V~~iL~~~~INIa~m~v~R~~~-g~~al~~i~~D~~~~~~~l~~l~~~~~ 591 (600)
|.+.+..+|+||+++.|+++|+++|+||..+...+... ....++.+..|....+.++++|+++++
T Consensus 1 ~~v~v~~~drpG~l~~v~~~la~~~inI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 66 (66)
T PF01842_consen 1 YRVRVIVPDRPGILADVTEILADHGINIDSISQSSDKDGVGIVFIVIVVDEEDLEKLLEELEALPG 66 (66)
T ss_dssp EEEEEEEETSTTHHHHHHHHHHHTTEEEEEEEEEEESSTTEEEEEEEEEEGHGHHHHHHHHHHHTT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcCCCHHHeEEEecCCCceEEEEEEECCCCCHHHHHHHHHcccC
Confidence 46778899999999999999999999999999998766 445778888888889999999998764
|
ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C .... |
| >PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=98.20 E-value=4.1e-06 Score=87.29 Aligned_cols=81 Identities=19% Similarity=0.221 Sum_probs=66.8
Q ss_pred cceeccCCEEEEEe-cChhHHHHHHHhhcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEecCCCccccccc
Q 007512 191 VGVSLVGKTLAVLG-FGKVGSEVARRAKGLGMHVIAHDPYAPADRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVL 269 (600)
Q Consensus 191 ~g~~l~gktiGIIG-lG~IG~~vA~~l~~~g~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Pl~~~t~~li 269 (600)
.+.++.||+++||| .|.+|+.+|.+|...|+.|.+|+.+.. ++++++++||+|+++++..+ ++
T Consensus 152 ~~i~~~Gk~V~viGrs~~mG~PmA~~L~~~g~tVtv~~~rT~------------~l~e~~~~ADIVIsavg~~~----~v 215 (296)
T PRK14188 152 VHGDLSGLNAVVIGRSNLVGKPMAQLLLAANATVTIAHSRTR------------DLPAVCRRADILVAAVGRPE----MV 215 (296)
T ss_pred hCCCCCCCEEEEEcCCcchHHHHHHHHHhCCCEEEEECCCCC------------CHHHHHhcCCEEEEecCChh----hc
Confidence 35689999999999 999999999999999999999964321 47889999999999999543 34
Q ss_pred cHhHhccCCCceEEEEccCCc
Q 007512 270 NDETFGKMKKGVRIINVARGG 290 (600)
Q Consensus 270 ~~~~l~~mk~gailvNvarg~ 290 (600)
.... +|+|+++||+|--.
T Consensus 216 ~~~~---lk~GavVIDvGin~ 233 (296)
T PRK14188 216 KGDW---IKPGATVIDVGINR 233 (296)
T ss_pred chhe---ecCCCEEEEcCCcc
Confidence 4433 89999999998544
|
|
| >PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.19 E-value=5.1e-06 Score=88.06 Aligned_cols=87 Identities=29% Similarity=0.373 Sum_probs=68.1
Q ss_pred CCEEEEEecChhHHHHHHHhhcCCCEEEEECCCCC-hhHHHHc--------C------Cc-ccCHHHHhccCCEEEEecC
Q 007512 197 GKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAP-ADRARAI--------G------VD-LVSFDEAIATADFISLHMP 260 (600)
Q Consensus 197 gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~-~~~a~~~--------g------~~-~~~l~ell~~aDvV~l~~P 260 (600)
.++|+|||+|.||..+|.+|...|++|.+|+++.. .+..... | +. ..++++.++.||+|++++|
T Consensus 4 ~m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~aD~Vi~~v~ 83 (328)
T PRK14618 4 GMRVAVLGAGAWGTALAVLAASKGVPVRLWARRPEFAAALAAERENREYLPGVALPAELYPTADPEEALAGADFAVVAVP 83 (328)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhCcccccCCCCcCCCCeEEeCCHHHHHcCCCEEEEECc
Confidence 35899999999999999999999999999999753 2222222 3 21 2378888899999999999
Q ss_pred CCccccccccHhHhccCCCceEEEEccCC
Q 007512 261 LTPATSKVLNDETFGKMKKGVRIINVARG 289 (600)
Q Consensus 261 l~~~t~~li~~~~l~~mk~gailvNvarg 289 (600)
... + ++.++.++++.++++++.|
T Consensus 84 ~~~-~-----~~v~~~l~~~~~vi~~~~G 106 (328)
T PRK14618 84 SKA-L-----RETLAGLPRALGYVSCAKG 106 (328)
T ss_pred hHH-H-----HHHHHhcCcCCEEEEEeec
Confidence 553 2 5556778999999999987
|
|
| >PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.17 E-value=3.6e-06 Score=88.61 Aligned_cols=91 Identities=25% Similarity=0.264 Sum_probs=68.3
Q ss_pred CEEEEEecChhHHHHHHHhhcCCCEEEEECCCCC-hhHHHHc--------------CCcc-cCHHHHhccCCEEEEecCC
Q 007512 198 KTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAP-ADRARAI--------------GVDL-VSFDEAIATADFISLHMPL 261 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~-~~~a~~~--------------g~~~-~~l~ell~~aDvV~l~~Pl 261 (600)
++|+|||+|.||..+|.+|...|.+|.+||+... .+..... ++.. .++++.+++||+|++|+|.
T Consensus 2 mkI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~v~~ 81 (325)
T PRK00094 2 MKIAVLGAGSWGTALAIVLARNGHDVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRATTDLAEALADADLILVAVPS 81 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEEeCCHHHHHhCCCEEEEeCCH
Confidence 4799999999999999999999999999998752 2333332 2222 3677889999999999995
Q ss_pred CccccccccHhHhccCCCceEEEEccCCc
Q 007512 262 TPATSKVLNDETFGKMKKGVRIINVARGG 290 (600)
Q Consensus 262 ~~~t~~li~~~~l~~mk~gailvNvarg~ 290 (600)
..+..++. .....++++.++|++..|-
T Consensus 82 -~~~~~v~~-~l~~~~~~~~~vi~~~ngv 108 (325)
T PRK00094 82 -QALREVLK-QLKPLLPPDAPIVWATKGI 108 (325)
T ss_pred -HHHHHHHH-HHHhhcCCCCEEEEEeecc
Confidence 44555553 3445578899999997553
|
|
| >COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.16 E-value=1.1e-05 Score=80.27 Aligned_cols=115 Identities=21% Similarity=0.308 Sum_probs=89.2
Q ss_pred CEEEEEecChhHHHHHHHhhcCCCEEEEECCCC-ChhHHHHcCCcc-cCHHHH---hccCCEEEEecCCCccccccccHh
Q 007512 198 KTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYA-PADRARAIGVDL-VSFDEA---IATADFISLHMPLTPATSKVLNDE 272 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~-~~~~a~~~g~~~-~~l~el---l~~aDvV~l~~Pl~~~t~~li~~~ 272 (600)
++||.||||+||..++++|+..|.+|++||.++ ..+.+...|+.. .+++++ |..--+|-+.+|-.+-|..+++ +
T Consensus 1 M~iGmiGLGrMG~n~v~rl~~~ghdvV~yD~n~~av~~~~~~ga~~a~sl~el~~~L~~pr~vWlMvPag~it~~vi~-~ 79 (300)
T COG1023 1 MQIGMIGLGRMGANLVRRLLDGGHDVVGYDVNQTAVEELKDEGATGAASLDELVAKLSAPRIVWLMVPAGDITDAVID-D 79 (300)
T ss_pred CcceeeccchhhHHHHHHHHhCCCeEEEEcCCHHHHHHHHhcCCccccCHHHHHHhcCCCcEEEEEccCCCchHHHHH-H
Confidence 479999999999999999999999999999988 456677777653 366665 5667999999998866666664 3
Q ss_pred HhccCCCceEEEEccCCccccHHHHHHhHhcCCceEEEEeccC
Q 007512 273 TFGKMKKGVRIINVARGGVIDEEALVRALDSGRVAQAALDVFT 315 (600)
Q Consensus 273 ~l~~mk~gailvNvarg~ivde~aL~~aL~~g~i~ga~lDv~~ 315 (600)
.-..|.+|=++||-+...--|....++.|++..| ..+||-.
T Consensus 80 la~~L~~GDivIDGGNS~y~Ds~rr~~~l~~kgi--~flD~GT 120 (300)
T COG1023 80 LAPLLSAGDIVIDGGNSNYKDSLRRAKLLAEKGI--HFLDVGT 120 (300)
T ss_pred HHhhcCCCCEEEECCccchHHHHHHHHHHHhcCC--eEEeccC
Confidence 4556889999999877665565556666777766 5666644
|
|
| >PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=98.16 E-value=5.7e-06 Score=85.60 Aligned_cols=81 Identities=22% Similarity=0.278 Sum_probs=67.2
Q ss_pred cceeccCCEEEEEec-ChhHHHHHHHhhcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEecCCCccccccc
Q 007512 191 VGVSLVGKTLAVLGF-GKVGSEVARRAKGLGMHVIAHDPYAPADRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVL 269 (600)
Q Consensus 191 ~g~~l~gktiGIIGl-G~IG~~vA~~l~~~g~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Pl~~~t~~li 269 (600)
.+.++.||+++|||. |.+|+.+|.+|...|+.|..|.... .++.+..++||+|+.+++.. +++
T Consensus 152 ~~i~l~Gk~v~vIG~S~ivG~Pla~lL~~~gatVtv~~s~t------------~~l~~~~~~ADIVI~avg~~----~~v 215 (284)
T PRK14179 152 YNVELEGKHAVVIGRSNIVGKPMAQLLLDKNATVTLTHSRT------------RNLAEVARKADILVVAIGRG----HFV 215 (284)
T ss_pred hCCCCCCCEEEEECCCCcCcHHHHHHHHHCCCEEEEECCCC------------CCHHHHHhhCCEEEEecCcc----ccC
Confidence 467999999999999 9999999999999999999995332 15888999999999999944 345
Q ss_pred cHhHhccCCCceEEEEccCCc
Q 007512 270 NDETFGKMKKGVRIINVARGG 290 (600)
Q Consensus 270 ~~~~l~~mk~gailvNvarg~ 290 (600)
.... +|+|+++||+|--.
T Consensus 216 ~~~~---ik~GavVIDvgin~ 233 (284)
T PRK14179 216 TKEF---VKEGAVVIDVGMNR 233 (284)
T ss_pred CHHH---ccCCcEEEEeccee
Confidence 5543 79999999998433
|
|
| >PRK11880 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=98.12 E-value=5.7e-05 Score=77.55 Aligned_cols=99 Identities=23% Similarity=0.323 Sum_probs=67.0
Q ss_pred CEEEEEecChhHHHHHHHhhcCC---CEEEEECCCC-ChhHHHH-cCCcc-cCHHHHhccCCEEEEecCCCccccccccH
Q 007512 198 KTLAVLGFGKVGSEVARRAKGLG---MHVIAHDPYA-PADRARA-IGVDL-VSFDEAIATADFISLHMPLTPATSKVLND 271 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~g---~~V~~~d~~~-~~~~a~~-~g~~~-~~l~ell~~aDvV~l~~Pl~~~t~~li~~ 271 (600)
++|+|||+|.||+.+++.+...| .+|.+||++. ..+...+ .|+.. .+.++++.+||+|++|+|. .....++..
T Consensus 3 m~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r~~~~~~~~~~~~g~~~~~~~~~~~~~advVil~v~~-~~~~~v~~~ 81 (267)
T PRK11880 3 KKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDPSPEKRAALAEEYGVRAATDNQEAAQEADVVVLAVKP-QVMEEVLSE 81 (267)
T ss_pred CEEEEEechHHHHHHHHHHHhCCCCcceEEEEcCCHHHHHHHHHhcCCeecCChHHHHhcCCEEEEEcCH-HHHHHHHHH
Confidence 58999999999999999998777 7899999876 2233333 36644 3677888999999999983 334443322
Q ss_pred hHhccCCCceEEEEccCCccccHHHHHHhHh
Q 007512 272 ETFGKMKKGVRIINVARGGVIDEEALVRALD 302 (600)
Q Consensus 272 ~~l~~mk~gailvNvarg~ivde~aL~~aL~ 302 (600)
....+ +..|+.+.-|- ..+.+.+.+.
T Consensus 82 -l~~~~--~~~vvs~~~gi--~~~~l~~~~~ 107 (267)
T PRK11880 82 -LKGQL--DKLVVSIAAGV--TLARLERLLG 107 (267)
T ss_pred -HHhhc--CCEEEEecCCC--CHHHHHHhcC
Confidence 12223 35666665543 4556655554
|
|
| >TIGR00720 sda_mono L-serine dehydratase, iron-sulfur-dependent, single chain form | Back alignment and domain information |
|---|
Probab=98.10 E-value=1.2e-05 Score=87.38 Aligned_cols=135 Identities=16% Similarity=0.002 Sum_probs=86.3
Q ss_pred CceEEEEEEeecCCCCccccccccHHHHHhhchhhhccchhhccH------------HHHHhhcCceEEEEEeec-C-CC
Q 007512 405 GVKTVKVSYASSRAPDDLDTRLLRAMITKGLIEPISDVFVNLVNA------------DYTAKQRGLRLTEERILL-D-GS 470 (600)
Q Consensus 405 ~~k~v~i~~~Gs~a~~~~~~~~~~~a~l~GlL~~~~~~~vn~vnA------------~~~A~e~GI~v~~~~~~~-~-~~ 470 (600)
.+++++++++|||+ .|.++|++|+|++.||++ +.+++++.... +.++.+++|.+.+..... . ..
T Consensus 41 ~~~rv~v~LyGSLA-~TGkGHgTD~Avl~GL~G-~~P~~vd~~~~~~~~~~~~~~~~l~l~~~~~i~f~~~~di~f~~~~ 118 (455)
T TIGR00720 41 QVTRVQVDLYGSLA-LTGKGHLTDIAILMGLAG-IYPNTVDIDTKKGFLHEVLENKVLKLAGQHHVPFDYANDLIFHNKP 118 (455)
T ss_pred CCcEEEEEEEchhh-hcCCCccccHHHHHHhcC-CCCCCcChhhhHHHHHHHHhcCeeecCCCCccccCcccceeeCCCC
Confidence 58999999999999 999999999999999994 44555655533 334556788776543211 0 11
Q ss_pred CCCCCceEEEEEeecccccccccCCCcE-EEEEE-EEeCCceEEEEEcceEEEeecCccEEEEEecCCC---CChhhHHh
Q 007512 471 PESPLEFIQVQIANVESKFASAISESGE-IKVEG-RVKDGVPHLTKVGSFEVDVSLEGSIILCRQVDQP---GMIGTVGS 545 (600)
Q Consensus 471 ~~~~~n~i~v~~~~~~~~~~~~~~~~~~-~~v~G-sv~gG~~~I~~Idgf~v~~~g~~~~Liv~~~D~p---G~Ia~V~~ 545 (600)
...|||+++++..+ .++.. .+.++ ||+||.++.-+=.+.+. .. ..+.| -....+..
T Consensus 119 lp~HPNgm~f~a~d---------~~g~~l~~~t~ySIGGGfI~~~~~~~~~~---~~-------~~~~p~~f~s~~ell~ 179 (455)
T TIGR00720 119 LPLHENGMTITAFN---------SKNEVLYEETYYSVGGGFIVTEKHFGSEE---DN-------NVSVAYPFKSAKELLE 179 (455)
T ss_pred CCCCCCeeEEEEEe---------CCCCEEEEEEEEEcCCceeeecccccccc---cc-------CCCCCcCCCCHHHHHH
Confidence 12699999999985 23333 47888 88888776432111110 00 01222 22444666
Q ss_pred hhhcCCccccceEee
Q 007512 546 ILGSENVNVSFMSVG 560 (600)
Q Consensus 546 iL~~~~INIa~m~v~ 560 (600)
...++++.|..+-+.
T Consensus 180 ~~~~~~~~i~e~v~~ 194 (455)
T TIGR00720 180 LCQKHGKSISEIALL 194 (455)
T ss_pred HHHHhCCCHHHHHHH
Confidence 667788888877554
|
This enzyme is also called serine deaminase and L-serine dehydratase 1. L-serine ammonia-lyase converts serine into pyruvate in the gluconeogenesis pathway from serine. This enzyme is comprised of a single chain in Escherichia coli, Mycobacterium tuberculosis, and several other species, but has separate alpha and beta chains in Bacillus subtilis and related species. The beta and alpha chains are homologous to the N-terminal and C-terminal regions, respectively, but are rather deeply branched in a UPGMA tree. This enzyme requires iron and dithiothreitol for activation in vitro, and is a predicted 4Fe-4S protein. Escherichia coli Pseudomonas aeruginosa have two copies of this protein. |
| >PRK15057 UDP-glucose 6-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.08 E-value=2.1e-05 Score=85.46 Aligned_cols=129 Identities=14% Similarity=0.149 Sum_probs=82.0
Q ss_pred CEEEEEecChhHHHHHHHhhcCCCEEEEECCCCChhHHHHc-----------------CCcc---cCHHHHhccCCEEEE
Q 007512 198 KTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPADRARAI-----------------GVDL---VSFDEAIATADFISL 257 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~~~~a~~~-----------------g~~~---~~l~ell~~aDvV~l 257 (600)
++|+|||+|.+|..+|..+. .|++|++||.+...-..... +... .+..++.++||+|++
T Consensus 1 mkI~VIGlGyvGl~~A~~lA-~G~~VigvD~d~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~~t~~~~~~~~~ad~vii 79 (388)
T PRK15057 1 MKITISGTGYVGLSNGLLIA-QNHEVVALDILPSRVAMLNDRISPIVDKEIQQFLQSDKIHFNATLDKNEAYRDADYVII 79 (388)
T ss_pred CEEEEECCCHHHHHHHHHHH-hCCcEEEEECCHHHHHHHHcCCCCCCCcCHHHHHHhCCCcEEEecchhhhhcCCCEEEE
Confidence 37999999999999997766 49999999987633222122 2222 135677899999999
Q ss_pred ecCCCcccc-cccc-----H--hHhccCCCceEEEEccCCccccHHHHHHhHhcCCceEEEEeccCCCCCCCC---Cccc
Q 007512 258 HMPLTPATS-KVLN-----D--ETFGKMKKGVRIINVARGGVIDEEALVRALDSGRVAQAALDVFTEEPPPAD---SKLV 326 (600)
Q Consensus 258 ~~Pl~~~t~-~li~-----~--~~l~~mk~gailvNvarg~ivde~aL~~aL~~g~i~ga~lDv~~~EP~~~~---~~L~ 326 (600)
|+|...+-+ +..+ . +.+..+++|.++|+.+.-.+=..+.+.+.+.+..+ +|.+|.+... +.++
T Consensus 80 ~Vpt~~~~k~~~~dl~~v~~v~~~i~~~~~g~lVV~~STv~pgtt~~l~~~~~~~~v------~~~PE~l~~G~a~~d~~ 153 (388)
T PRK15057 80 ATPTDYDPKTNYFNTSSVESVIKDVVEINPYAVMVIKSTVPVGFTAAMHKKYRTENI------IFSPEFLREGKALYDNL 153 (388)
T ss_pred eCCCCCccCCCCcChHHHHHHHHHHHhcCCCCEEEEeeecCCchHHHHHHHhhcCcE------EECcccccCCccccccc
Confidence 999542111 1111 1 22333799999999998776567777666655333 1456654322 3455
Q ss_pred cCCcEEE
Q 007512 327 QHERVTV 333 (600)
Q Consensus 327 ~~~nvil 333 (600)
..|.+++
T Consensus 154 ~p~rvv~ 160 (388)
T PRK15057 154 HPSRIVI 160 (388)
T ss_pred CCCEEEE
Confidence 5566643
|
|
| >PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=98.07 E-value=3.6e-05 Score=85.98 Aligned_cols=186 Identities=19% Similarity=0.234 Sum_probs=113.9
Q ss_pred CceEEE-EcCCCCCCHHHHhccCCCceEEEEcCcccCccChhHHHhCCceeecCCCCC--hHHHHHHHHHHHHH--HHhc
Q 007512 98 LCDALI-VRSGTKVNRDVFESSAGRLKVVGRAGVGIDNVDLAAATEFGCLVVNAPTAN--TVAAAEHGIALLAA--MARN 172 (600)
Q Consensus 98 ~~d~li-~~~~~~~~~~~l~~~~~~Lk~I~~~g~G~d~iD~~aa~~~GI~V~n~p~~~--~~~vAE~~l~lll~--~~R~ 172 (600)
++|+++ ++. .+.+.++.++++--+|+......|.=-++++.++||.+..-.... +++-.=.+++-|-. -.|-
T Consensus 65 ~~diilkV~~---P~~~e~~~l~~g~~li~~l~p~~~~~l~~~l~~~~it~ia~e~vpr~sraq~~d~lssma~IAGy~A 141 (509)
T PRK09424 65 QSDIILKVNA---PSDDEIALLREGATLVSFIWPAQNPELLEKLAARGVTVLAMDAVPRISRAQSLDALSSMANIAGYRA 141 (509)
T ss_pred cCCEEEEeCC---CCHHHHHhcCCCCEEEEEeCcccCHHHHHHHHHcCCEEEEeecccccccCCCcccccchhhhhHHHH
Confidence 578777 432 344556666666677777766555555788899999887632211 00000011111111 1222
Q ss_pred hHHHHHHHHcCcccccc-ccceeccCCEEEEEecChhHHHHHHHhhcCCCEEEEECCCC-ChhHHHHcCCccc--CH---
Q 007512 173 VAQADASVKAGKWQRNK-YVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYA-PADRARAIGVDLV--SF--- 245 (600)
Q Consensus 173 i~~~~~~~~~g~W~~~~-~~g~~l~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~-~~~~a~~~g~~~~--~l--- 245 (600)
+..+.+.. ++..... .......|.++.|+|.|.+|...++.++.+|.+|+++|.+. ..+.++++|.+.+ +.
T Consensus 142 v~~aa~~~--~~~~~g~~taaG~~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aeslGA~~v~i~~~e~ 219 (509)
T PRK09424 142 VIEAAHEF--GRFFTGQITAAGKVPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVESMGAEFLELDFEEE 219 (509)
T ss_pred HHHHHHHh--cccCCCceeccCCcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEEeccccc
Confidence 22221111 1111100 00013469999999999999999999999999999999987 5677888887632 11
Q ss_pred -----------------------HHHhccCCEEEEecCCCcc-ccccccHhHhccCCCceEEEEccC
Q 007512 246 -----------------------DEAIATADFISLHMPLTPA-TSKVLNDETFGKMKKGVRIINVAR 288 (600)
Q Consensus 246 -----------------------~ell~~aDvV~l~~Pl~~~-t~~li~~~~l~~mk~gailvNvar 288 (600)
.+.+..+|+|+.|+..... ...++.++.++.||+|.+++|+|-
T Consensus 220 ~~~~~gya~~~s~~~~~~~~~~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 220 GGSGDGYAKVMSEEFIKAEMALFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred cccccchhhhcchhHHHHHHHHHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEcc
Confidence 1112569999999864221 234557889999999999999983
|
|
| >TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein | Back alignment and domain information |
|---|
Probab=98.06 E-value=1.9e-05 Score=82.35 Aligned_cols=91 Identities=20% Similarity=0.233 Sum_probs=71.7
Q ss_pred HHHHHHHhhcCCCEEEEECCCCCh------hHHHHcCCccc-CHHHHhccCCEEEEecCCCccccccccHhHhccCCCce
Q 007512 209 GSEVARRAKGLGMHVIAHDPYAPA------DRARAIGVDLV-SFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGV 281 (600)
Q Consensus 209 G~~vA~~l~~~g~~V~~~d~~~~~------~~a~~~g~~~~-~l~ell~~aDvV~l~~Pl~~~t~~li~~~~l~~mk~ga 281 (600)
|+.+|++|...|++|++||++... +...+.|+..+ +..+++++||+|++|+|..+.++.++ ...+..+++|+
T Consensus 32 GspMArnLlkAGheV~V~Drnrsa~e~e~~e~LaeaGA~~AaS~aEAAa~ADVVIL~LPd~aaV~eVl-~GLaa~L~~Ga 110 (341)
T TIGR01724 32 GSRMAIEFAMAGHDVVLAEPNREFMSDDLWKKVEDAGVKVVSDDKEAAKHGEIHVLFTPFGKGTFSIA-RTIIEHVPENA 110 (341)
T ss_pred HHHHHHHHHHCCCEEEEEeCChhhhhhhhhHHHHHCCCeecCCHHHHHhCCCEEEEecCCHHHHHHHH-HHHHhcCCCCC
Confidence 889999999999999999986531 23566787655 68999999999999999877777777 45788899999
Q ss_pred EEEEccCCccccHHHHHHhHhc
Q 007512 282 RIINVARGGVIDEEALVRALDS 303 (600)
Q Consensus 282 ilvNvarg~ivde~aL~~aL~~ 303 (600)
++||++.... +.++..|+.
T Consensus 111 IVID~STIsP---~t~~~~~e~ 129 (341)
T TIGR01724 111 VICNTCTVSP---VVLYYSLEK 129 (341)
T ss_pred EEEECCCCCH---HHHHHHHHH
Confidence 9999977554 444444443
|
This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown. |
| >PRK07680 late competence protein ComER; Validated | Back alignment and domain information |
|---|
Probab=98.06 E-value=8.6e-06 Score=84.15 Aligned_cols=100 Identities=13% Similarity=0.230 Sum_probs=71.5
Q ss_pred EEEEEecChhHHHHHHHhhcCC----CEEEEECCCCC-hhHHHH-c-CCccc-CHHHHhccCCEEEEecCCCcccccccc
Q 007512 199 TLAVLGFGKVGSEVARRAKGLG----MHVIAHDPYAP-ADRARA-I-GVDLV-SFDEAIATADFISLHMPLTPATSKVLN 270 (600)
Q Consensus 199 tiGIIGlG~IG~~vA~~l~~~g----~~V~~~d~~~~-~~~a~~-~-g~~~~-~l~ell~~aDvV~l~~Pl~~~t~~li~ 270 (600)
+|||||+|.||+.+++.|...| .+|.+||++.. .+...+ . |+... +..+++.+||+|++|+| ......++
T Consensus 2 ~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~aDiVilav~-p~~~~~vl- 79 (273)
T PRK07680 2 NIGFIGTGNMGTILIEAFLESGAVKPSQLTITNRTPAKAYHIKERYPGIHVAKTIEEVISQSDLIFICVK-PLDIYPLL- 79 (273)
T ss_pred EEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCHHHHHHHHHHcCCeEEECCHHHHHHhCCEEEEecC-HHHHHHHH-
Confidence 6999999999999999998776 37999998762 222222 2 55443 67888999999999998 33345544
Q ss_pred HhHhccCCCceEEEEccCCccccHHHHHHhHh
Q 007512 271 DETFGKMKKGVRIINVARGGVIDEEALVRALD 302 (600)
Q Consensus 271 ~~~l~~mk~gailvNvarg~ivde~aL~~aL~ 302 (600)
+.....++++.+||+++-|- ..+.|.+.+.
T Consensus 80 ~~l~~~l~~~~~iis~~ag~--~~~~L~~~~~ 109 (273)
T PRK07680 80 QKLAPHLTDEHCLVSITSPI--SVEQLETLVP 109 (273)
T ss_pred HHHHhhcCCCCEEEEECCCC--CHHHHHHHcC
Confidence 23334577888999998543 5666655544
|
|
| >PRK06476 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=98.06 E-value=1e-05 Score=82.85 Aligned_cols=99 Identities=16% Similarity=0.269 Sum_probs=69.6
Q ss_pred EEEEEecChhHHHHHHHhhcCCC---EEEEECCCCCh-hHH-HHc-CCcc-cCHHHHhccCCEEEEecCCCccccccccH
Q 007512 199 TLAVLGFGKVGSEVARRAKGLGM---HVIAHDPYAPA-DRA-RAI-GVDL-VSFDEAIATADFISLHMPLTPATSKVLND 271 (600)
Q Consensus 199 tiGIIGlG~IG~~vA~~l~~~g~---~V~~~d~~~~~-~~a-~~~-g~~~-~~l~ell~~aDvV~l~~Pl~~~t~~li~~ 271 (600)
+|||||+|+||+++++.|...|. .+.+||++... +.. ... ++.. .+.++++++||+|++|+| .+....++..
T Consensus 2 ~IgiIG~G~mG~aia~~L~~~g~~~~~i~v~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~aDvVilav~-p~~~~~vl~~ 80 (258)
T PRK06476 2 KIGFIGTGAITEAMVTGLLTSPADVSEIIVSPRNAQIAARLAERFPKVRIAKDNQAVVDRSDVVFLAVR-PQIAEEVLRA 80 (258)
T ss_pred eEEEECcCHHHHHHHHHHHhCCCChheEEEECCCHHHHHHHHHHcCCceEeCCHHHHHHhCCEEEEEeC-HHHHHHHHHH
Confidence 79999999999999999986664 35788876522 222 223 3543 478888999999999999 4444444432
Q ss_pred hHhccCCCceEEEEccCCccccHHHHHHhHhc
Q 007512 272 ETFGKMKKGVRIINVARGGVIDEEALVRALDS 303 (600)
Q Consensus 272 ~~l~~mk~gailvNvarg~ivde~aL~~aL~~ 303 (600)
+ .++++.++|.+.- + +..+.|.+.++.
T Consensus 81 --l-~~~~~~~vis~~a-g-~~~~~l~~~~~~ 107 (258)
T PRK06476 81 --L-RFRPGQTVISVIA-A-TDRAALLEWIGH 107 (258)
T ss_pred --h-ccCCCCEEEEECC-C-CCHHHHHHHhCC
Confidence 3 2578889999873 3 467777666654
|
|
| >cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
Probab=98.05 E-value=1.8e-05 Score=76.16 Aligned_cols=82 Identities=21% Similarity=0.315 Sum_probs=68.6
Q ss_pred eeccCCEEEEEecChh-HHHHHHHhhcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEecCCCccccccccH
Q 007512 193 VSLVGKTLAVLGFGKV-GSEVARRAKGLGMHVIAHDPYAPADRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVLND 271 (600)
Q Consensus 193 ~~l~gktiGIIGlG~I-G~~vA~~l~~~g~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Pl~~~t~~li~~ 271 (600)
..+.||++.|||.|.+ |..+|+.|...|.+|...+++. .++.+.+.+||+|+.+++.. ++++.
T Consensus 40 ~~l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~------------~~l~~~l~~aDiVIsat~~~----~ii~~ 103 (168)
T cd01080 40 IDLAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKT------------KNLKEHTKQADIVIVAVGKP----GLVKG 103 (168)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCc------------hhHHHHHhhCCEEEEcCCCC----ceecH
Confidence 4789999999999996 8889999999999999888753 24778899999999999843 26777
Q ss_pred hHhccCCCceEEEEccCCcccc
Q 007512 272 ETFGKMKKGVRIINVARGGVID 293 (600)
Q Consensus 272 ~~l~~mk~gailvNvarg~ivd 293 (600)
+. ++++.++||+|...-+|
T Consensus 104 ~~---~~~~~viIDla~prdvd 122 (168)
T cd01080 104 DM---VKPGAVVIDVGINRVPD 122 (168)
T ss_pred HH---ccCCeEEEEccCCCccc
Confidence 64 58899999999877666
|
NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a |
| >COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.01 E-value=1.1e-05 Score=82.75 Aligned_cols=88 Identities=25% Similarity=0.408 Sum_probs=70.4
Q ss_pred eccCCEEEEEecChhHHHHHHHhhcCCCEEEEE-CCCC-ChhHHHHcCCcccCHHHHhccCCEEEEecCCCccccccccH
Q 007512 194 SLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAH-DPYA-PADRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVLND 271 (600)
Q Consensus 194 ~l~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~-d~~~-~~~~a~~~g~~~~~l~ell~~aDvV~l~~Pl~~~t~~li~~ 271 (600)
-|.||||+|||||.-|..=|..|+..|.+|++- .+.. +-+.|.+.|++..+.+|+.++||+|.+-+|... -..++.+
T Consensus 15 ~LkgK~iaIIGYGsQG~ahalNLRDSGlnViiGlr~g~~s~~kA~~dGf~V~~v~ea~k~ADvim~L~PDe~-q~~vy~~ 93 (338)
T COG0059 15 LLKGKKVAIIGYGSQGHAQALNLRDSGLNVIIGLRKGSSSWKKAKEDGFKVYTVEEAAKRADVVMILLPDEQ-QKEVYEK 93 (338)
T ss_pred HhcCCeEEEEecChHHHHHHhhhhhcCCcEEEEecCCchhHHHHHhcCCEeecHHHHhhcCCEEEEeCchhh-HHHHHHH
Confidence 689999999999999999999999999988653 3333 467899999999999999999999999999443 3334444
Q ss_pred hHhccCCCceE
Q 007512 272 ETFGKMKKGVR 282 (600)
Q Consensus 272 ~~l~~mk~gai 282 (600)
+.-..||+|..
T Consensus 94 ~I~p~Lk~G~a 104 (338)
T COG0059 94 EIAPNLKEGAA 104 (338)
T ss_pred HhhhhhcCCce
Confidence 55555777663
|
|
| >KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.00 E-value=7.3e-05 Score=77.71 Aligned_cols=163 Identities=16% Similarity=0.213 Sum_probs=111.6
Q ss_pred CCEEEEEecChhHHHHHHHhhcCCCEEEEECCCCChhHHHHcCCc-ccCHHHHh-ccCCEEEEecCCCccccccccHhHh
Q 007512 197 GKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPADRARAIGVD-LVSFDEAI-ATADFISLHMPLTPATSKVLNDETF 274 (600)
Q Consensus 197 gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~~~~a~~~g~~-~~~l~ell-~~aDvV~l~~Pl~~~t~~li~~~~l 274 (600)
-.+|||||+|.+|+-+|+.+...|..++.+|+....+.+...|.. +..+.+++ +..|+|.+|+.-. .+..++-.--+
T Consensus 52 tl~IaIIGfGnmGqflAetli~aGh~li~hsRsdyssaa~~yg~~~ft~lhdlcerhpDvvLlctsil-siekilatypf 130 (480)
T KOG2380|consen 52 TLVIAIIGFGNMGQFLAETLIDAGHGLICHSRSDYSSAAEKYGSAKFTLLHDLCERHPDVVLLCTSIL-SIEKILATYPF 130 (480)
T ss_pred ceEEEEEecCcHHHHHHHHHHhcCceeEecCcchhHHHHHHhcccccccHHHHHhcCCCEEEEEehhh-hHHHHHHhcCc
Confidence 358999999999999999999999999999987755666777775 34577776 4699999998732 34455544456
Q ss_pred ccCCCceEEEEccCCccccHHHHHHhHhcCCceEEEEeccCCCCCCCCCccccCCcEEEcCCCCCCcHHHHHHHHHHHHH
Q 007512 275 GKMKKGVRIINVARGGVIDEEALVRALDSGRVAQAALDVFTEEPPPADSKLVQHERVTVTPHLGASTMEAQEGVAIEIAE 354 (600)
Q Consensus 275 ~~mk~gailvNvarg~ivde~aL~~aL~~g~i~ga~lDv~~~EP~~~~~~L~~~~nvilTPH~~~~t~ea~~~~~~~~~~ 354 (600)
+.+|.|++++++-+-+...-+++.+-|.+-.-.=..=-.|+++ ..++.+-.+|-|+.--.+|.. +...+-.+
T Consensus 131 qrlrrgtlfvdvlSvKefek~lfekYLPkdfDIlctHpmfGPk--svnh~wqglpfVydkvRig~~------~~r~ercE 202 (480)
T KOG2380|consen 131 QRLRRGTLFVDVLSVKEFEKELFEKYLPKDFDILCTHPMFGPK--SVNHEWQGLPFVYDKVRIGYA------ASRPERCE 202 (480)
T ss_pred hhhccceeEeeeeecchhHHHHHHHhCccccceEeecCCcCCC--cCCCccccCceEEEEeecccc------ccchHHHH
Confidence 7799999999999888777777777776643212222235555 456677778888776655421 11123335
Q ss_pred HHHHHHcCCCCCcc
Q 007512 355 AVVGALKGELAATA 368 (600)
Q Consensus 355 ~l~~~l~g~~~~~~ 368 (600)
-+.+.+.......+
T Consensus 203 ~fleIf~cegckmV 216 (480)
T KOG2380|consen 203 FFLEIFACEGCKMV 216 (480)
T ss_pred HHHHHHHhcCCeEE
Confidence 55555555444433
|
|
| >PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ] | Back alignment and domain information |
|---|
Probab=97.97 E-value=2.2e-05 Score=76.67 Aligned_cols=134 Identities=21% Similarity=0.222 Sum_probs=71.7
Q ss_pred CEEEEEecChhHHHHHHHhhcCCCEEEEECCCCChhHHHHcCC---------------------cc-cCHHHHhccCCEE
Q 007512 198 KTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPADRARAIGV---------------------DL-VSFDEAIATADFI 255 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~~~~a~~~g~---------------------~~-~~l~ell~~aDvV 255 (600)
++|+|||+|.+|..+|..+...|++|++||.+...-.....|. .. .+.++.+.+||++
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t~~~~~ai~~adv~ 80 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRATTDIEEAIKDADVV 80 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEESEHHHHHHH-SEE
T ss_pred CEEEEECCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhhhhhhhhhhccceE
Confidence 5899999999999999999999999999997653222222221 11 2566778999999
Q ss_pred EEecCCCcccc-ccccH--------hHhccCCCceEEEEccCCccccHH-HHHHhHhcCCceEEEEe-ccCCCCCCCC--
Q 007512 256 SLHMPLTPATS-KVLND--------ETFGKMKKGVRIINVARGGVIDEE-ALVRALDSGRVAQAALD-VFTEEPPPAD-- 322 (600)
Q Consensus 256 ~l~~Pl~~~t~-~li~~--------~~l~~mk~gailvNvarg~ivde~-aL~~aL~~g~i~ga~lD-v~~~EP~~~~-- 322 (600)
++|+| ||... +..|- .....++++.++|.-+.-.+=..+ -+...|++..-.+.-.+ +|-+|=+...
T Consensus 81 ~I~Vp-TP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~STvppGtt~~~~~~ile~~~~~~~~f~la~~PErl~~G~a 159 (185)
T PF03721_consen 81 FICVP-TPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIESTVPPGTTEELLKPILEKRSGKKEDFHLAYSPERLREGRA 159 (185)
T ss_dssp EE-----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESSSSSTTHHHHHHHHHHHHHCCTTTCEEEEE------TTSH
T ss_pred EEecC-CCccccCCccHHHHHHHHHHHHHHHhhcceEEEccEEEEeeehHhhhhhhhhhcccccCCeEEECCCccCCCCc
Confidence 99999 44222 22222 334458999999999876554444 23334443110000000 1445533322
Q ss_pred -CccccCCcEE
Q 007512 323 -SKLVQHERVT 332 (600)
Q Consensus 323 -~~L~~~~nvi 332 (600)
..+...+++|
T Consensus 160 ~~d~~~~~rvV 170 (185)
T PF03721_consen 160 IEDFRNPPRVV 170 (185)
T ss_dssp HHHHHSSSEEE
T ss_pred chhccCCCEEE
Confidence 3566778885
|
The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D .... |
| >PRK08229 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.95 E-value=3.4e-05 Score=82.03 Aligned_cols=106 Identities=26% Similarity=0.365 Sum_probs=73.8
Q ss_pred CEEEEEecChhHHHHHHHhhcCCCEEEEECCCCChhHHHHcCCcc-----------------cCHHHHhccCCEEEEecC
Q 007512 198 KTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPADRARAIGVDL-----------------VSFDEAIATADFISLHMP 260 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~~~~a~~~g~~~-----------------~~l~ell~~aDvV~l~~P 260 (600)
++|+|||.|.||+.+|.+|...|.+|.+||+....+...+.|... .+-.+.++.+|+|++++|
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vil~vk 82 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAAGADVTLIGRARIGDELRAHGLTLTDYRGRDVRVPPSAIAFSTDPAALATADLVLVTVK 82 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCcEEEEecHHHHHHHHhcCceeecCCCcceecccceeEeccChhhccCCCEEEEEec
Confidence 579999999999999999998899999999754333334444321 112256789999999999
Q ss_pred CCccccccccHhHhccCCCceEEEEccCCccccHHHHHHhHhcCCc
Q 007512 261 LTPATSKVLNDETFGKMKKGVRIINVARGGVIDEEALVRALDSGRV 306 (600)
Q Consensus 261 l~~~t~~li~~~~l~~mk~gailvNvarg~ivde~aL~~aL~~g~i 306 (600)
.. +....+ +.....++++.+|+++..| +-..+.+.+.+...++
T Consensus 83 ~~-~~~~~~-~~l~~~~~~~~iii~~~nG-~~~~~~l~~~~~~~~~ 125 (341)
T PRK08229 83 SA-ATADAA-AALAGHARPGAVVVSFQNG-VRNADVLRAALPGATV 125 (341)
T ss_pred Cc-chHHHH-HHHHhhCCCCCEEEEeCCC-CCcHHHHHHhCCCCcE
Confidence 44 445444 3344557889999988654 3345566666665544
|
|
| >PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.94 E-value=2.5e-05 Score=80.99 Aligned_cols=81 Identities=21% Similarity=0.283 Sum_probs=68.2
Q ss_pred cceeccCCEEEEEecCh-hHHHHHHHhhcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEecCCCccccccc
Q 007512 191 VGVSLVGKTLAVLGFGK-VGSEVARRAKGLGMHVIAHDPYAPADRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVL 269 (600)
Q Consensus 191 ~g~~l~gktiGIIGlG~-IG~~vA~~l~~~g~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Pl~~~t~~li 269 (600)
.+..+.||++.|||.|. +|+.+|..|...|++|..++.+. .++.+.+++||+|+.+++. .+++
T Consensus 152 ~~i~l~Gk~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~t------------~~l~~~~~~ADIVIsAvg~----p~~i 215 (286)
T PRK14175 152 ADIDLEGKNAVVIGRSHIVGQPVSKLLLQKNASVTILHSRS------------KDMASYLKDADVIVSAVGK----PGLV 215 (286)
T ss_pred cCCCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCc------------hhHHHHHhhCCEEEECCCC----Cccc
Confidence 45689999999999998 99999999999999999987642 2578899999999999984 3467
Q ss_pred cHhHhccCCCceEEEEccCCc
Q 007512 270 NDETFGKMKKGVRIINVARGG 290 (600)
Q Consensus 270 ~~~~l~~mk~gailvNvarg~ 290 (600)
..+. +|+|+++||+|-..
T Consensus 216 ~~~~---vk~gavVIDvGi~~ 233 (286)
T PRK14175 216 TKDV---VKEGAVIIDVGNTP 233 (286)
T ss_pred CHHH---cCCCcEEEEcCCCc
Confidence 7754 69999999998543
|
|
| >PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=97.92 E-value=3e-05 Score=75.36 Aligned_cols=127 Identities=24% Similarity=0.282 Sum_probs=77.4
Q ss_pred EEEEEecChhHHHHHHHhhcCCCEEEEECCCCC-hhHH-----------HHcCC-------------cc-cCHHHHhccC
Q 007512 199 TLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAP-ADRA-----------RAIGV-------------DL-VSFDEAIATA 252 (600)
Q Consensus 199 tiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~-~~~a-----------~~~g~-------------~~-~~l~ell~~a 252 (600)
+|+|||.|.||+.+|..+...|++|..||++.. .+.+ .+.|. .+ .+++++. +|
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~~~-~a 79 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDLEEAV-DA 79 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSGGGGC-TE
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCHHHHh-hh
Confidence 699999999999999999999999999998763 2111 11111 11 3677777 99
Q ss_pred CEEEEecCCCccccccccHhHhccCCCceEEEEccCCccccHHHHHHhHhc-CCceEEEEeccCCCCCCCCCccccCCcE
Q 007512 253 DFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVIDEEALVRALDS-GRVAQAALDVFTEEPPPADSKLVQHERV 331 (600)
Q Consensus 253 DvV~l~~Pl~~~t~~li~~~~l~~mk~gailvNvarg~ivde~aL~~aL~~-g~i~ga~lDv~~~EP~~~~~~L~~~~nv 331 (600)
|+|+=++|-..+.+.-+-++.-+.++++++|...+++= ....|...+.. .++ .|++.|. |+ ...||.+ +
T Consensus 80 dlViEai~E~l~~K~~~~~~l~~~~~~~~ilasnTSsl--~i~~la~~~~~p~R~--ig~Hf~~--P~-~~~~lVE---v 149 (180)
T PF02737_consen 80 DLVIEAIPEDLELKQELFAELDEICPPDTILASNTSSL--SISELAAALSRPERF--IGMHFFN--PP-HLMPLVE---V 149 (180)
T ss_dssp SEEEE-S-SSHHHHHHHHHHHHCCS-TTSEEEE--SSS---HHHHHTTSSTGGGE--EEEEE-S--ST-TT--EEE---E
T ss_pred heehhhccccHHHHHHHHHHHHHHhCCCceEEecCCCC--CHHHHHhccCcCceE--EEEeccc--cc-ccCceEE---E
Confidence 99999999777766655566666688998887665543 34555555543 345 5666664 33 2456765 4
Q ss_pred EEcCC
Q 007512 332 TVTPH 336 (600)
Q Consensus 332 ilTPH 336 (600)
+..|+
T Consensus 150 v~~~~ 154 (180)
T PF02737_consen 150 VPGPK 154 (180)
T ss_dssp EE-TT
T ss_pred eCCCC
Confidence 44444
|
1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B .... |
| >PRK06928 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=97.91 E-value=4.9e-05 Score=78.83 Aligned_cols=105 Identities=13% Similarity=0.224 Sum_probs=71.8
Q ss_pred CEEEEEecChhHHHHHHHhhcCC----CEEEEECCCCCh--hHH-HHc-CCc-ccCHHHHhccCCEEEEecCCCcccccc
Q 007512 198 KTLAVLGFGKVGSEVARRAKGLG----MHVIAHDPYAPA--DRA-RAI-GVD-LVSFDEAIATADFISLHMPLTPATSKV 268 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~g----~~V~~~d~~~~~--~~a-~~~-g~~-~~~l~ell~~aDvV~l~~Pl~~~t~~l 268 (600)
.+|+|||+|.||+.+++.+...| .+|++|+++... ... ... ++. ..+..+++.+||+|++|+| ......+
T Consensus 2 ~~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r~~~~~~~~l~~~~~~~~~~~~~~e~~~~aDvVilavp-p~~~~~v 80 (277)
T PRK06928 2 EKIGFIGYGSMADMIATKLLETEVATPEEIILYSSSKNEHFNQLYDKYPTVELADNEAEIFTKCDHSFICVP-PLAVLPL 80 (277)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcccEEEEeCCcHHHHHHHHHHcCCeEEeCCHHHHHhhCCEEEEecC-HHHHHHH
Confidence 47999999999999999998766 689999876422 111 122 233 2467888999999999999 3334443
Q ss_pred ccHhHhccCCCceEEEEccCCccccHHHHHHhHhcCCc
Q 007512 269 LNDETFGKMKKGVRIINVARGGVIDEEALVRALDSGRV 306 (600)
Q Consensus 269 i~~~~l~~mk~gailvNvarg~ivde~aL~~aL~~g~i 306 (600)
+ .+....++++..||.+.-| +..+.|.+.+...++
T Consensus 81 l-~~l~~~l~~~~~ivS~~aG--i~~~~l~~~~~~~~v 115 (277)
T PRK06928 81 L-KDCAPVLTPDRHVVSIAAG--VSLDDLLEITPGLQV 115 (277)
T ss_pred H-HHHHhhcCCCCEEEEECCC--CCHHHHHHHcCCCCE
Confidence 3 2222346778899998777 456677665543334
|
|
| >cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS) | Back alignment and domain information |
|---|
Probab=97.89 E-value=3.2e-05 Score=61.95 Aligned_cols=69 Identities=12% Similarity=0.284 Sum_probs=56.8
Q ss_pred cEEEEEecCCCCChhhHHhhhhcCCccccceEeeeecCCCcEEEEEEeCCC--CcHHHHHHHhcCCCcceE
Q 007512 527 SIILCRQVDQPGMIGTVGSILGSENVNVSFMSVGRVAPRKHAVMAIGVDEQ--PRKETLKKIGDVPAIEEF 595 (600)
Q Consensus 527 ~~Liv~~~D~pG~Ia~V~~iL~~~~INIa~m~v~R~~~g~~al~~i~~D~~--~~~~~l~~l~~~~~v~~v 595 (600)
|+|.+...|+||+++.++++|+++++||..+...+...++.+.+.+.++.. .-.+++++|+++++|.+|
T Consensus 1 ~~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~v~~v 71 (72)
T cd04878 1 HTLSVLVENEPGVLNRISGLFARRGFNIESLTVGPTEDPGISRITIVVEGDDDVIEQIVKQLNKLVDVLKV 71 (72)
T ss_pred CEEEEEEcCCCcHHHHHHHHHHhCCCCEEEEEeeecCCCCeEEEEEEEECCHHHHHHHHHHHhCCccEEEe
Confidence 578889999999999999999999999999998654346667788887753 344778899999988776
|
ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of |
| >COG2085 Predicted dinucleotide-binding enzymes [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.88 E-value=3.8e-05 Score=75.64 Aligned_cols=88 Identities=28% Similarity=0.389 Sum_probs=63.9
Q ss_pred CEEEEEecChhHHHHHHHhhcCCCEEEEECCCCCh-h--HHHHcC--CcccCHHHHhccCCEEEEecCCCccccccccHh
Q 007512 198 KTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPA-D--RARAIG--VDLVSFDEAIATADFISLHMPLTPATSKVLNDE 272 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~~-~--~a~~~g--~~~~~l~ell~~aDvV~l~~Pl~~~t~~li~~~ 272 (600)
++++|+|.|+||+.+|++|...|.+|+.-.++.+. . .+...+ ++..+.++..+.||+|++++|... .... .++
T Consensus 2 ~~~~i~GtGniG~alA~~~a~ag~eV~igs~r~~~~~~a~a~~l~~~i~~~~~~dA~~~aDVVvLAVP~~a-~~~v-~~~ 79 (211)
T COG2085 2 MIIAIIGTGNIGSALALRLAKAGHEVIIGSSRGPKALAAAAAALGPLITGGSNEDAAALADVVVLAVPFEA-IPDV-LAE 79 (211)
T ss_pred cEEEEeccChHHHHHHHHHHhCCCeEEEecCCChhHHHHHHHhhccccccCChHHHHhcCCEEEEeccHHH-HHhH-HHH
Confidence 58999999999999999999999999887655432 2 222333 234578999999999999999654 2222 234
Q ss_pred HhccCCCceEEEEccC
Q 007512 273 TFGKMKKGVRIINVAR 288 (600)
Q Consensus 273 ~l~~mk~gailvNvar 288 (600)
....++ |.++||+.-
T Consensus 80 l~~~~~-~KIvID~tn 94 (211)
T COG2085 80 LRDALG-GKIVIDATN 94 (211)
T ss_pred HHHHhC-CeEEEecCC
Confidence 444454 789998864
|
|
| >PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases | Back alignment and domain information |
|---|
Probab=97.86 E-value=2.2e-05 Score=72.65 Aligned_cols=94 Identities=22% Similarity=0.329 Sum_probs=69.0
Q ss_pred eccCCEEEEEecChhHHHHHHHhhcCCCE-EEEECCCCCh--hHHHHc---CCcc---cCHHHHhccCCEEEEecCCCcc
Q 007512 194 SLVGKTLAVLGFGKVGSEVARRAKGLGMH-VIAHDPYAPA--DRARAI---GVDL---VSFDEAIATADFISLHMPLTPA 264 (600)
Q Consensus 194 ~l~gktiGIIGlG~IG~~vA~~l~~~g~~-V~~~d~~~~~--~~a~~~---g~~~---~~l~ell~~aDvV~l~~Pl~~~ 264 (600)
.+.|+++.|||.|.+|+.++..|...|++ |..+++.... ..+... .+.. .++.+.+.++|+|+.++|...
T Consensus 9 ~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~~~~~~~~~~~~~~~~~~~~DivI~aT~~~~- 87 (135)
T PF01488_consen 9 DLKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEFGGVNIEAIPLEDLEEALQEADIVINATPSGM- 87 (135)
T ss_dssp TGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHTGCSEEEEEGGGHCHHHHTESEEEE-SSTTS-
T ss_pred CcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcCccccceeeHHHHHHHHhhCCeEEEecCCCC-
Confidence 78999999999999999999999999985 9999987522 223333 2222 356667899999999999653
Q ss_pred ccccccHhHhccCCCce-EEEEccCCc
Q 007512 265 TSKVLNDETFGKMKKGV-RIINVARGG 290 (600)
Q Consensus 265 t~~li~~~~l~~mk~ga-ilvNvarg~ 290 (600)
..+.++.+...++.. +++|.+...
T Consensus 88 --~~i~~~~~~~~~~~~~~v~Dla~Pr 112 (135)
T PF01488_consen 88 --PIITEEMLKKASKKLRLVIDLAVPR 112 (135)
T ss_dssp --TSSTHHHHTTTCHHCSEEEES-SS-
T ss_pred --cccCHHHHHHHHhhhhceeccccCC
Confidence 367888887665544 899997543
|
Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C .... |
| >PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins | Back alignment and domain information |
|---|
Probab=97.85 E-value=1.8e-05 Score=72.50 Aligned_cols=90 Identities=22% Similarity=0.414 Sum_probs=54.9
Q ss_pred cCCEEEEEecChhHHHHHHHhhcCCCEEEEE-CCCC-ChhHHHH-cC-CcccCHHHHhccCCEEEEecCCCccccccccH
Q 007512 196 VGKTLAVLGFGKVGSEVARRAKGLGMHVIAH-DPYA-PADRARA-IG-VDLVSFDEAIATADFISLHMPLTPATSKVLND 271 (600)
Q Consensus 196 ~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~-d~~~-~~~~a~~-~g-~~~~~l~ell~~aDvV~l~~Pl~~~t~~li~~ 271 (600)
...+|||||.|++|..+++.|+..|+.|.++ ++.. +.+++.. .+ ....++++++.+||++++++|... ...+. +
T Consensus 9 ~~l~I~iIGaGrVG~~La~aL~~ag~~v~~v~srs~~sa~~a~~~~~~~~~~~~~~~~~~aDlv~iavpDda-I~~va-~ 86 (127)
T PF10727_consen 9 ARLKIGIIGAGRVGTALARALARAGHEVVGVYSRSPASAERAAAFIGAGAILDLEEILRDADLVFIAVPDDA-IAEVA-E 86 (127)
T ss_dssp ---EEEEECTSCCCCHHHHHHHHTTSEEEEESSCHH-HHHHHHC--TT-----TTGGGCC-SEEEE-S-CCH-HHHHH-H
T ss_pred CccEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCcccccccccccccccccccccccccCCEEEEEechHH-HHHHH-H
Confidence 3568999999999999999999999999886 4433 2233322 22 234578899999999999999543 33332 2
Q ss_pred hHhcc--CCCceEEEEcc
Q 007512 272 ETFGK--MKKGVRIINVA 287 (600)
Q Consensus 272 ~~l~~--mk~gailvNva 287 (600)
..-.. .++|.+++-|+
T Consensus 87 ~La~~~~~~~g~iVvHtS 104 (127)
T PF10727_consen 87 QLAQYGAWRPGQIVVHTS 104 (127)
T ss_dssp HHHCC--S-TT-EEEES-
T ss_pred HHHHhccCCCCcEEEECC
Confidence 22222 68999999985
|
This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A. |
| >cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins | Back alignment and domain information |
|---|
Probab=97.85 E-value=6.9e-05 Score=63.76 Aligned_cols=67 Identities=33% Similarity=0.486 Sum_probs=56.7
Q ss_pred eeccCCEEEEEecChhHHHHHHHhhcC-CCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEecCCCccccccccH
Q 007512 193 VSLVGKTLAVLGFGKVGSEVARRAKGL-GMHVIAHDPYAPADRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVLND 271 (600)
Q Consensus 193 ~~l~gktiGIIGlG~IG~~vA~~l~~~-g~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Pl~~~t~~li~~ 271 (600)
..+.+++++|+|.|.+|+.++..+... +.+|..||+ |+++.++|.. +.+.+
T Consensus 19 ~~~~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r------------------------di~i~~~~~~----~~~~~ 70 (86)
T cd05191 19 KSLKGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR------------------------DILVTATPAG----VPVLE 70 (86)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC------------------------CEEEEcCCCC----CCchH
Confidence 457899999999999999999999987 678999987 9999999843 34555
Q ss_pred hHhccCCCceEEEEcc
Q 007512 272 ETFGKMKKGVRIINVA 287 (600)
Q Consensus 272 ~~l~~mk~gailvNva 287 (600)
+....++++++++|++
T Consensus 71 ~~~~~~~~~~~v~~~a 86 (86)
T cd05191 71 EATAKINEGAVVIDLA 86 (86)
T ss_pred HHHHhcCCCCEEEecC
Confidence 5677899999999974
|
Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al |
| >PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF) | Back alignment and domain information |
|---|
Probab=97.83 E-value=6.8e-05 Score=71.46 Aligned_cols=82 Identities=23% Similarity=0.318 Sum_probs=59.3
Q ss_pred cceeccCCEEEEEecCh-hHHHHHHHhhcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEecCCCccccccc
Q 007512 191 VGVSLVGKTLAVLGFGK-VGSEVARRAKGLGMHVIAHDPYAPADRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVL 269 (600)
Q Consensus 191 ~g~~l~gktiGIIGlG~-IG~~vA~~l~~~g~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Pl~~~t~~li 269 (600)
.+.++.||++.|||-+. +|+.++..|...|+.|..++.+. .++++.+++||+|+.+++. .+++
T Consensus 30 ~~~~l~Gk~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~T------------~~l~~~~~~ADIVVsa~G~----~~~i 93 (160)
T PF02882_consen 30 YGIDLEGKKVVVVGRSNIVGKPLAMLLLNKGATVTICHSKT------------KNLQEITRRADIVVSAVGK----PNLI 93 (160)
T ss_dssp TT-STTT-EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TTS------------SSHHHHHTTSSEEEE-SSS----TT-B
T ss_pred cCCCCCCCEEEEECCcCCCChHHHHHHHhCCCeEEeccCCC------------CcccceeeeccEEeeeecc----cccc
Confidence 46789999999999995 99999999999999999988663 2478889999999999983 4556
Q ss_pred cHhHhccCCCceEEEEccCCcc
Q 007512 270 NDETFGKMKKGVRIINVARGGV 291 (600)
Q Consensus 270 ~~~~l~~mk~gailvNvarg~i 291 (600)
..+ .+|+|+++||+|.-..
T Consensus 94 ~~~---~ik~gavVIDvG~~~~ 112 (160)
T PF02882_consen 94 KAD---WIKPGAVVIDVGINYV 112 (160)
T ss_dssp -GG---GS-TTEEEEE--CEEE
T ss_pred ccc---cccCCcEEEecCCccc
Confidence 655 3599999999987554
|
Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A .... |
| >PRK05472 redox-sensing transcriptional repressor Rex; Provisional | Back alignment and domain information |
|---|
Probab=97.81 E-value=2.2e-05 Score=78.33 Aligned_cols=127 Identities=13% Similarity=0.220 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHHhchHHHHHHHHcCccccccccceeccCCEEEEEecChhHHHHHHHh--hcCCCEEEE-ECCCCChhHH
Q 007512 159 AEHGIALLAAMARNVAQADASVKAGKWQRNKYVGVSLVGKTLAVLGFGKVGSEVARRA--KGLGMHVIA-HDPYAPADRA 235 (600)
Q Consensus 159 AE~~l~lll~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktiGIIGlG~IG~~vA~~l--~~~g~~V~~-~d~~~~~~~a 235 (600)
++|.+..++...|++.. |. ..++++|||+|.+|+.+++.+ ...|+++.+ +|+++.....
T Consensus 64 ~gy~v~~l~~~~~~~l~---------~~---------~~~rV~IIGaG~iG~~l~~~~~~~~~g~~ivgv~D~d~~~~~~ 125 (213)
T PRK05472 64 VGYNVEELLEFIEKILG---------LD---------RTWNVALVGAGNLGRALLNYNGFEKRGFKIVAAFDVDPEKIGT 125 (213)
T ss_pred CCeeHHHHHHHHHHHhC---------CC---------CCcEEEEECCCHHHHHHHHhhhcccCCcEEEEEEECChhhcCC
Confidence 34888888888886652 22 245899999999999999863 356899887 5665321110
Q ss_pred HHcCCc---ccCHHHHhcc--CCEEEEecCCCcc---ccccccHhHhccCCCceEEEEccCCccccHHHHHHhHhc
Q 007512 236 RAIGVD---LVSFDEAIAT--ADFISLHMPLTPA---TSKVLNDETFGKMKKGVRIINVARGGVIDEEALVRALDS 303 (600)
Q Consensus 236 ~~~g~~---~~~l~ell~~--aDvV~l~~Pl~~~---t~~li~~~~l~~mk~gailvNvarg~ivde~aL~~aL~~ 303 (600)
.-.|+. ..++.+++++ .|.+++|+|.... ...+.......-|...++.+|+.+|.+++.++|..+|..
T Consensus 126 ~i~g~~v~~~~~l~~li~~~~iD~ViIa~P~~~~~~i~~~l~~~Gi~~il~~~p~~~~v~~~~~v~~~~l~~~l~~ 201 (213)
T PRK05472 126 KIGGIPVYHIDELEEVVKENDIEIGILTVPAEAAQEVADRLVEAGIKGILNFAPVRLSVPEDVIVRNVDLTVELQT 201 (213)
T ss_pred EeCCeEEcCHHHHHHHHHHCCCCEEEEeCCchhHHHHHHHHHHcCCCEEeecCceeecCCCCCEEEEechHHHHHH
Confidence 111221 2357777765 9999999997653 122222223333566678899999999999988887764
|
|
| >TIGR01915 npdG NADPH-dependent F420 reductase | Back alignment and domain information |
|---|
Probab=97.78 E-value=4.5e-05 Score=76.27 Aligned_cols=90 Identities=26% Similarity=0.249 Sum_probs=61.5
Q ss_pred CEEEEEe-cChhHHHHHHHhhcCCCEEEEECCCCCh-hHHHH--------cCC----cccCHHHHhccCCEEEEecCCCc
Q 007512 198 KTLAVLG-FGKVGSEVARRAKGLGMHVIAHDPYAPA-DRARA--------IGV----DLVSFDEAIATADFISLHMPLTP 263 (600)
Q Consensus 198 ktiGIIG-lG~IG~~vA~~l~~~g~~V~~~d~~~~~-~~a~~--------~g~----~~~~l~ell~~aDvV~l~~Pl~~ 263 (600)
++|+||| .|.||+.+|+.|...|.+|..++++... +.... .|+ ...+..+.+++||+|++|+|..
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~ea~~~aDvVilavp~~- 79 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDLEKAEEAAAKALEELGHGGSDIKVTGADNAEAAKRADVVILAVPWD- 79 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCHHHHHHHHHHHHhhccccCCCceEEEeChHHHHhcCCEEEEECCHH-
Confidence 4799997 9999999999999889999999886522 11111 122 1236678899999999999944
Q ss_pred cccccccHhHhccCCCceEEEEccCCc
Q 007512 264 ATSKVLNDETFGKMKKGVRIINVARGG 290 (600)
Q Consensus 264 ~t~~li~~~~l~~mk~gailvNvarg~ 290 (600)
....++. ..-..++ +.++|++.-|-
T Consensus 80 ~~~~~l~-~l~~~l~-~~vvI~~~ngi 104 (219)
T TIGR01915 80 HVLKTLE-SLRDELS-GKLVISPVVPL 104 (219)
T ss_pred HHHHHHH-HHHHhcc-CCEEEEeccCc
Confidence 2333332 1112233 47999997653
|
This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase. |
| >COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00029 Score=75.17 Aligned_cols=143 Identities=23% Similarity=0.257 Sum_probs=87.6
Q ss_pred CEEEEEecChhHHHHHHHhhcCCCEEEEECCCCChhH--------------------HHHcC-CcccCHHHHhccCCEEE
Q 007512 198 KTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPADR--------------------ARAIG-VDLVSFDEAIATADFIS 256 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~~~~--------------------a~~~g-~~~~~l~ell~~aDvV~ 256 (600)
.+|||||||-||-.+|..+...|++|+|||-+...-. +.+.| .+..+--+.++.||+++
T Consensus 10 ~~I~ViGLGYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~~g~lraTtd~~~l~~~dv~i 89 (436)
T COG0677 10 ATIGVIGLGYVGLPLAAAFASAGFKVIGVDINQKKVDKLNRGESYIEEPDLDEVVKEAVESGKLRATTDPEELKECDVFI 89 (436)
T ss_pred eEEEEEccccccHHHHHHHHHcCCceEeEeCCHHHHHHHhCCcceeecCcHHHHHHHHHhcCCceEecChhhcccCCEEE
Confidence 6999999999999999999999999999997642221 12222 12221123456999999
Q ss_pred EecCCCccccc-ccc--------HhHhccCCCceEEEEccCCccccHHHHHHhHhcC--CceEEEEec---cCCCCCCC-
Q 007512 257 LHMPLTPATSK-VLN--------DETFGKMKKGVRIINVARGGVIDEEALVRALDSG--RVAQAALDV---FTEEPPPA- 321 (600)
Q Consensus 257 l~~Pl~~~t~~-li~--------~~~l~~mk~gailvNvarg~ivde~aL~~aL~~g--~i~ga~lDv---~~~EP~~~- 321 (600)
+|+| ||-+.+ --+ +..-.-||+|.++|==+....=..+.++..+.+. .+ ..+-|. |.+|-..+
T Consensus 90 I~VP-TPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle~~sgL-~~~~Df~laysPERv~PG 167 (436)
T COG0677 90 ICVP-TPLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLLEERSGL-KFGEDFYLAYSPERVLPG 167 (436)
T ss_pred EEec-CCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHhhcCCC-cccceeeEeeCccccCCC
Confidence 9999 553332 111 1123348999988877764443455554444332 11 122332 34443222
Q ss_pred --CCccccCCcEEEcCCCCCCcHHHHHH
Q 007512 322 --DSKLVQHERVTVTPHLGASTMEAQEG 347 (600)
Q Consensus 322 --~~~L~~~~nvilTPH~~~~t~ea~~~ 347 (600)
...+.++|+| +||.|+++-+.
T Consensus 168 ~~~~el~~~~kV-----IgG~tp~~~e~ 190 (436)
T COG0677 168 NVLKELVNNPKV-----IGGVTPKCAEL 190 (436)
T ss_pred chhhhhhcCCce-----eecCCHHHHHH
Confidence 3456678888 78888776543
|
|
| >TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II | Back alignment and domain information |
|---|
Probab=97.75 E-value=9.4e-05 Score=78.41 Aligned_cols=85 Identities=16% Similarity=0.276 Sum_probs=64.0
Q ss_pred EEEEecChhHHHHHHHhhcC-CCEEEEE-CCCCCh--hHHHHcCCcc-------------------cCHHHHhccCCEEE
Q 007512 200 LAVLGFGKVGSEVARRAKGL-GMHVIAH-DPYAPA--DRARAIGVDL-------------------VSFDEAIATADFIS 256 (600)
Q Consensus 200 iGIIGlG~IG~~vA~~l~~~-g~~V~~~-d~~~~~--~~a~~~g~~~-------------------~~l~ell~~aDvV~ 256 (600)
|||+|+|+||+.+++.+... ++++++. |+.+.. ..+...|+.. .++++++.++|+|+
T Consensus 1 VaInG~GrIGr~varav~~~~d~elVaVnD~~~~~~a~lA~~lgyds~~~~~~~~~~~~~~~l~v~g~~eeLl~~vDiVv 80 (333)
T TIGR01546 1 VGVNGYGTIGKRVADAVTKQDDMKLVGVTKTSPDFEAYRAKELGIPVYAASEEFIPRFEEAGIEVAGTLEDLLEKVDIVV 80 (333)
T ss_pred CEEECCcHHHHHHHHHHhhCCCcEEEEEecCChHHHHHHHHHhCCCEEeecCCcceEeccCceEecCCHHHHhhcCCEEE
Confidence 69999999999999998744 7999875 433221 2333334321 15889999999999
Q ss_pred EecCCCccccccccHhHhccCCCceEEEEcc
Q 007512 257 LHMPLTPATSKVLNDETFGKMKKGVRIINVA 287 (600)
Q Consensus 257 l~~Pl~~~t~~li~~~~l~~mk~gailvNva 287 (600)
.|+| .+.+..+.+.+.+|+++++|+-.-
T Consensus 81 e~Tp---~~~~~~na~~~~~~GakaVl~~~p 108 (333)
T TIGR01546 81 DATP---GGIGAKNKPLYEKAGVKAIFQGGE 108 (333)
T ss_pred ECCC---CCCChhhHHHHHhCCcCEEEECCC
Confidence 9977 446788999999999999998754
|
All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's. |
| >PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate | Back alignment and domain information |
|---|
Probab=97.75 E-value=6.6e-05 Score=71.21 Aligned_cols=89 Identities=25% Similarity=0.377 Sum_probs=61.4
Q ss_pred EEEEEecChhHHHHHHHhhcCCCEEEEECCCCC-hhHHHHcC--------C------c-ccCHHHHhccCCEEEEecCCC
Q 007512 199 TLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAP-ADRARAIG--------V------D-LVSFDEAIATADFISLHMPLT 262 (600)
Q Consensus 199 tiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~-~~~a~~~g--------~------~-~~~l~ell~~aDvV~l~~Pl~ 262 (600)
+|+|+|.|..|..+|..|...|.+|..|++... .+...+.+ + . ..+++++++.||+|++++|..
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~~~ad~IiiavPs~ 80 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKATTDLEEALEDADIIIIAVPSQ 80 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEEESSHHHHHTT-SEEEE-S-GG
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCcccccccCHHHHhCcccEEEecccHH
Confidence 689999999999999999999999999998752 12111111 1 1 137899999999999999944
Q ss_pred ccccccccHhHhccCCCceEEEEccCC
Q 007512 263 PATSKVLNDETFGKMKKGVRIINVARG 289 (600)
Q Consensus 263 ~~t~~li~~~~l~~mk~gailvNvarg 289 (600)
. .+.++ ++....++++..++++..|
T Consensus 81 ~-~~~~~-~~l~~~l~~~~~ii~~~KG 105 (157)
T PF01210_consen 81 A-HREVL-EQLAPYLKKGQIIISATKG 105 (157)
T ss_dssp G-HHHHH-HHHTTTSHTT-EEEETS-S
T ss_pred H-HHHHH-HHHhhccCCCCEEEEecCC
Confidence 3 34333 3344457889999999865
|
This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A .... |
| >PRK13304 L-aspartate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.72 E-value=9.3e-05 Score=76.34 Aligned_cols=101 Identities=15% Similarity=0.240 Sum_probs=65.3
Q ss_pred CEEEEEecChhHHHHHHHhhcC--CCEEE-EECCCCCh-h-HHHHcCCc-ccCHHHHhccCCEEEEecCCCccccccccH
Q 007512 198 KTLAVLGFGKVGSEVARRAKGL--GMHVI-AHDPYAPA-D-RARAIGVD-LVSFDEAIATADFISLHMPLTPATSKVLND 271 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~--g~~V~-~~d~~~~~-~-~a~~~g~~-~~~l~ell~~aDvV~l~~Pl~~~t~~li~~ 271 (600)
.+|||||+|.||+.+++.+... ++++. ++|++... + .+...+.. +.++++++.++|+|++|+|... .. +
T Consensus 2 mrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~~~~a~~~a~~~~~~~~~~~~ell~~~DvVvi~a~~~~-~~----~ 76 (265)
T PRK13304 2 LKIGIVGCGAIASLITKAILSGRINAELYAFYDRNLEKAENLASKTGAKACLSIDELVEDVDLVVECASVNA-VE----E 76 (265)
T ss_pred CEEEEECccHHHHHHHHHHHcCCCCeEEEEEECCCHHHHHHHHHhcCCeeECCHHHHhcCCCEEEEcCChHH-HH----H
Confidence 4799999999999999998864 57754 58887632 2 22334444 3479999999999999998332 11 1
Q ss_pred hHhccCCCceEEEEccCCccccH---HHHHHhHhc
Q 007512 272 ETFGKMKKGVRIINVARGGVIDE---EALVRALDS 303 (600)
Q Consensus 272 ~~l~~mk~gailvNvarg~ivde---~aL~~aL~~ 303 (600)
-....|+.|.-++..+-|.+.|. +.|.++.++
T Consensus 77 ~~~~al~~Gk~Vvv~s~gAl~d~~~~~~L~~aA~~ 111 (265)
T PRK13304 77 VVPKSLENGKDVIIMSVGALADKELFLKLYKLAKE 111 (265)
T ss_pred HHHHHHHcCCCEEEEchHHhcCHHHHHHHHHHHHH
Confidence 11223455555555666766653 345554444
|
|
| >cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=97.72 E-value=9.9e-05 Score=77.89 Aligned_cols=92 Identities=22% Similarity=0.307 Sum_probs=66.5
Q ss_pred ccCCEEEEEecChhHHHHHHHhhcCC-CEEEEECCCCC--hhHHHHcCCccc---CHHHHhccCCEEEEecCCCcccccc
Q 007512 195 LVGKTLAVLGFGKVGSEVARRAKGLG-MHVIAHDPYAP--ADRARAIGVDLV---SFDEAIATADFISLHMPLTPATSKV 268 (600)
Q Consensus 195 l~gktiGIIGlG~IG~~vA~~l~~~g-~~V~~~d~~~~--~~~a~~~g~~~~---~l~ell~~aDvV~l~~Pl~~~t~~l 268 (600)
+.|++|+|||.|.||+.+++.++..| .+|+++|+... .+.+.+.|.... ++.+.+.++|+|+.++|... ...+
T Consensus 176 l~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~l~~aDvVi~at~~~~-~~~~ 254 (311)
T cd05213 176 LKGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEELAKELGGNAVPLDELLELLNEADVVISATGAPH-YAKI 254 (311)
T ss_pred ccCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcCCeEEeHHHHHHHHhcCCEEEECCCCCc-hHHH
Confidence 67999999999999999999999765 68999998763 245566666443 35677889999999999443 3222
Q ss_pred ccHhHhccC-CCceEEEEccC
Q 007512 269 LNDETFGKM-KKGVRIINVAR 288 (600)
Q Consensus 269 i~~~~l~~m-k~gailvNvar 288 (600)
+ +..++.. +++.+++|.+.
T Consensus 255 ~-~~~~~~~~~~~~~viDlav 274 (311)
T cd05213 255 V-ERAMKKRSGKPRLIVDLAV 274 (311)
T ss_pred H-HHHHhhCCCCCeEEEEeCC
Confidence 2 2223222 36788999885
|
Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, |
| >cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00014 Score=71.04 Aligned_cols=98 Identities=20% Similarity=0.236 Sum_probs=69.7
Q ss_pred ccccccccceeccCCEEEEEecCh-hHHHHHHHhhcCCCEEEEECCCCChhHH--HHcCCcc---cC----HHHHhccCC
Q 007512 184 KWQRNKYVGVSLVGKTLAVLGFGK-VGSEVARRAKGLGMHVIAHDPYAPADRA--RAIGVDL---VS----FDEAIATAD 253 (600)
Q Consensus 184 ~W~~~~~~g~~l~gktiGIIGlG~-IG~~vA~~l~~~g~~V~~~d~~~~~~~a--~~~g~~~---~~----l~ell~~aD 253 (600)
-|++....+.++.||++.|||-+. +|+.+|..|...|+.|..+|.+.-..+. .+..-.. .+ +.+.+++||
T Consensus 49 i~~~~~~~~~~l~GK~vvVIGrS~iVGkPla~lL~~~~AtVti~~~~~~~~~~~~~~~~hs~t~~~~~~~~l~~~~~~AD 128 (197)
T cd01079 49 IYNKILPYGNRLYGKTITIINRSEVVGRPLAALLANDGARVYSVDINGIQVFTRGESIRHEKHHVTDEEAMTLDCLSQSD 128 (197)
T ss_pred CcccccccCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEEecCcccccccccccccccccccchhhHHHHHhhhCC
Confidence 344444457899999999999985 6999999999999999999743211000 0000001 12 778999999
Q ss_pred EEEEecCCCcccccc-ccHhHhccCCCceEEEEccC
Q 007512 254 FISLHMPLTPATSKV-LNDETFGKMKKGVRIINVAR 288 (600)
Q Consensus 254 vV~l~~Pl~~~t~~l-i~~~~l~~mk~gailvNvar 288 (600)
+|+.+++. .++ +..+.+ |+|+++||+|-
T Consensus 129 IVIsAvG~----~~~~i~~d~i---k~GavVIDVGi 157 (197)
T cd01079 129 VVITGVPS----PNYKVPTELL---KDGAICINFAS 157 (197)
T ss_pred EEEEccCC----CCCccCHHHc---CCCcEEEEcCC
Confidence 99999993 344 666654 89999999983
|
The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional |
| >PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1 | Back alignment and domain information |
|---|
Probab=97.70 E-value=8.2e-05 Score=71.38 Aligned_cols=95 Identities=26% Similarity=0.384 Sum_probs=68.8
Q ss_pred eeccCCEEEEEecChhHHHHHHHhhcCCCEEEEECCCCC-hhHHHHcCCc---c--------------------c----C
Q 007512 193 VSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAP-ADRARAIGVD---L--------------------V----S 244 (600)
Q Consensus 193 ~~l~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~-~~~a~~~g~~---~--------------------~----~ 244 (600)
..+...++.|+|.|..|...++.++++|++|..+|.+.. .......+.. . . .
T Consensus 16 ~~~~p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (168)
T PF01262_consen 16 GGVPPAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERPERLRQLESLGAYFIEVDYEDHLERKDFDKADYYEHPESYESN 95 (168)
T ss_dssp TEE-T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTTEESEETTTTTTTSB-CCHHHCHHHCCHHHHH
T ss_pred CCCCCeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCHHHHHhhhcccCceEEEcccccccccccchhhhhHHHHHhHHH
Confidence 357778999999999999999999999999999998763 2233333321 1 0 3
Q ss_pred HHHHhccCCEEEEecC-CCccccccccHhHhccCCCceEEEEcc
Q 007512 245 FDEAIATADFISLHMP-LTPATSKVLNDETFGKMKKGVRIINVA 287 (600)
Q Consensus 245 l~ell~~aDvV~l~~P-l~~~t~~li~~~~l~~mk~gailvNva 287 (600)
|.+.++.+|+|+.++- -.+..-.++.++.++.|||+.+|+|++
T Consensus 96 f~~~i~~~d~vI~~~~~~~~~~P~lvt~~~~~~m~~gsvIvDis 139 (168)
T PF01262_consen 96 FAEFIAPADIVIGNGLYWGKRAPRLVTEEMVKSMKPGSVIVDIS 139 (168)
T ss_dssp HHHHHHH-SEEEEHHHBTTSS---SBEHHHHHTSSTTEEEEETT
T ss_pred HHHHHhhCcEEeeecccCCCCCCEEEEhHHhhccCCCceEEEEE
Confidence 6678899999986443 255677899999999999999999986
|
4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A .... |
| >cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate | Back alignment and domain information |
|---|
Probab=97.70 E-value=8.3e-05 Score=57.69 Aligned_cols=45 Identities=16% Similarity=0.355 Sum_probs=41.6
Q ss_pred EEecCCCCChhhHHhhhhcCCccccceEeeeecCCCcEEEEEEeCC
Q 007512 531 CRQVDQPGMIGTVGSILGSENVNVSFMSVGRVAPRKHAVMAIGVDE 576 (600)
Q Consensus 531 v~~~D~pG~Ia~V~~iL~~~~INIa~m~v~R~~~g~~al~~i~~D~ 576 (600)
+..+|+||.++++++.|+++++||.+|.+.+.. ++.+++.+.+|.
T Consensus 3 v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~-~~~~~~~~~v~~ 47 (56)
T cd04889 3 VFVENKPGRLAEVTEILAEAGINIKAISIAETR-GEFGILRLIFSD 47 (56)
T ss_pred EEeCCCCChHHHHHHHHHHcCCCEeeEEEEEcc-CCcEEEEEEECC
Confidence 578999999999999999999999999998765 788999999987
|
Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A |
| >TIGR01035 hemA glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00012 Score=80.51 Aligned_cols=92 Identities=23% Similarity=0.333 Sum_probs=69.3
Q ss_pred eccCCEEEEEecChhHHHHHHHhhcCC-CEEEEECCCCCh--hHHHHcCCcc---cCHHHHhccCCEEEEecCCCccccc
Q 007512 194 SLVGKTLAVLGFGKVGSEVARRAKGLG-MHVIAHDPYAPA--DRARAIGVDL---VSFDEAIATADFISLHMPLTPATSK 267 (600)
Q Consensus 194 ~l~gktiGIIGlG~IG~~vA~~l~~~g-~~V~~~d~~~~~--~~a~~~g~~~---~~l~ell~~aDvV~l~~Pl~~~t~~ 267 (600)
.+.|++++|||.|.||..+++.|+..| .+|+++++.... +.+...|... .++.+.+.++|+|+.|++.+ ..
T Consensus 177 ~l~~~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs~~ra~~la~~~g~~~i~~~~l~~~l~~aDvVi~aT~s~---~~ 253 (417)
T TIGR01035 177 SLKGKKALLIGAGEMGELVAKHLLRKGVGKILIANRTYERAEDLAKELGGEAVKFEDLEEYLAEADIVISSTGAP---HP 253 (417)
T ss_pred CccCCEEEEECChHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCeEeeHHHHHHHHhhCCEEEECCCCC---Cc
Confidence 477999999999999999999999999 789999987632 2444555432 35667889999999998733 45
Q ss_pred cccHhHhccCC----CceEEEEccC
Q 007512 268 VLNDETFGKMK----KGVRIINVAR 288 (600)
Q Consensus 268 li~~~~l~~mk----~gailvNvar 288 (600)
+++.+.+..+. ...+++|.+.
T Consensus 254 ii~~e~l~~~~~~~~~~~~viDla~ 278 (417)
T TIGR01035 254 IVSKEDVERALRERTRPLFIIDIAV 278 (417)
T ss_pred eEcHHHHHHHHhcCCCCeEEEEeCC
Confidence 67777776542 2458888874
|
This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA. |
| >PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00013 Score=75.57 Aligned_cols=79 Identities=19% Similarity=0.295 Sum_probs=66.1
Q ss_pred cceeccCCEEEEEecCh-hHHHHHHHhhcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEecCCCccccccc
Q 007512 191 VGVSLVGKTLAVLGFGK-VGSEVARRAKGLGMHVIAHDPYAPADRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVL 269 (600)
Q Consensus 191 ~g~~l~gktiGIIGlG~-IG~~vA~~l~~~g~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Pl~~~t~~li 269 (600)
.+.++.||++.|||-|. +|+.+|..|...|+.|..++.+. -++.+.+++||+|+.+++.. +++
T Consensus 153 ~~i~l~Gk~vvViGrs~iVG~Pla~lL~~~~atVtv~hs~T------------~~l~~~~~~ADIvi~avG~p----~~v 216 (285)
T PRK10792 153 YGIDTYGLNAVVVGASNIVGRPMSLELLLAGCTVTVCHRFT------------KNLRHHVRNADLLVVAVGKP----GFI 216 (285)
T ss_pred cCCCCCCCEEEEECCCcccHHHHHHHHHHCCCeEEEEECCC------------CCHHHHHhhCCEEEEcCCCc----ccc
Confidence 46789999999999999 99999999999999999987642 15888999999999999622 346
Q ss_pred cHhHhccCCCceEEEEccC
Q 007512 270 NDETFGKMKKGVRIINVAR 288 (600)
Q Consensus 270 ~~~~l~~mk~gailvNvar 288 (600)
..+ .+|+|+++||+|-
T Consensus 217 ~~~---~vk~gavVIDvGi 232 (285)
T PRK10792 217 PGE---WIKPGAIVIDVGI 232 (285)
T ss_pred cHH---HcCCCcEEEEccc
Confidence 553 4699999999984
|
|
| >cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00017 Score=57.84 Aligned_cols=68 Identities=12% Similarity=0.255 Sum_probs=56.9
Q ss_pred EEEEecCCCCChhhHHhhhhcCCccccceEeeeecCCCcEEEEEEeCCC-CcHHHHHHHhcCCCcceEEE
Q 007512 529 ILCRQVDQPGMIGTVGSILGSENVNVSFMSVGRVAPRKHAVMAIGVDEQ-PRKETLKKIGDVPAIEEFVF 597 (600)
Q Consensus 529 Liv~~~D~pG~Ia~V~~iL~~~~INIa~m~v~R~~~g~~al~~i~~D~~-~~~~~l~~l~~~~~v~~v~~ 597 (600)
+.+..+|+||+++++.+.|.++++||.+|..... .++.+.+.+.++.. ...+++++|++.+++..++.
T Consensus 3 l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~L~~~~~v~~v~~ 71 (72)
T cd04874 3 LSIIAEDKPGVLRDLTGVIAEHGGNITYTQQFIE-REGKARIYMELEGVGDIEELVEELRSLPIVREVEI 71 (72)
T ss_pred EEEEeCCCCChHHHHHHHHHhCCCCEEEEEEecc-CCCeEEEEEEEeccccHHHHHHHHhCCCCeEEEEe
Confidence 5677899999999999999999999999987643 35567777888876 55589999999999988775
|
a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains. |
| >PRK09287 6-phosphogluconate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00012 Score=81.25 Aligned_cols=109 Identities=17% Similarity=0.168 Sum_probs=84.5
Q ss_pred hHHHHHHHhhcCCCEEEEECCCCCh-hHHHHc-----CCc-ccCHHHHhcc---CCEEEEecCCCccccccccHhHhccC
Q 007512 208 VGSEVARRAKGLGMHVIAHDPYAPA-DRARAI-----GVD-LVSFDEAIAT---ADFISLHMPLTPATSKVLNDETFGKM 277 (600)
Q Consensus 208 IG~~vA~~l~~~g~~V~~~d~~~~~-~~a~~~-----g~~-~~~l~ell~~---aDvV~l~~Pl~~~t~~li~~~~l~~m 277 (600)
||+.+|++|...|++|.+||+.... +...+. |+. ..+++++++. +|+|++++|..+.+..++ ...+..|
T Consensus 1 MG~~mA~nL~~~G~~V~v~nrt~~~~~~l~~~~g~~~g~~~~~s~~e~v~~l~~~~~Ii~mv~~g~~v~~Vi-~~l~~~l 79 (459)
T PRK09287 1 MGKNLALNIASHGYTVAVYNRTPEKTDEFLAEEGKGKKIVPAYTLEEFVASLEKPRKILLMVKAGAPVDAVI-EQLLPLL 79 (459)
T ss_pred CcHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhCCCCCeEeeCCHHHHHhhCCCCCEEEEECCCchHHHHHH-HHHHhcC
Confidence 6899999999999999999998732 333332 343 3488888774 899999999888888888 4577889
Q ss_pred CCceEEEEccCCccccHHHHHHhHhcCCceEEEEeccCCC
Q 007512 278 KKGVRIINVARGGVIDEEALVRALDSGRVAQAALDVFTEE 317 (600)
Q Consensus 278 k~gailvNvarg~ivde~aL~~aL~~g~i~ga~lDv~~~E 317 (600)
.+|.++||++....-+...+.+.+++..+.....=|++.+
T Consensus 80 ~~GdiiID~gn~~~~~t~~~~~~l~~~Gi~fvdapVSGG~ 119 (459)
T PRK09287 80 EKGDIIIDGGNSNYKDTIRREKELAEKGIHFIGMGVSGGE 119 (459)
T ss_pred CCCCEEEECCCCCHHHHHHHHHHHHhcCCeEEecCCCCCH
Confidence 9999999999888888888888888776644444455544
|
|
| >PRK07634 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00019 Score=72.54 Aligned_cols=103 Identities=18% Similarity=0.305 Sum_probs=67.2
Q ss_pred CCEEEEEecChhHHHHHHHhhcCC---CE-EEEECCC-C-ChhH-HHHcCCcc-cCHHHHhccCCEEEEecCCCcccccc
Q 007512 197 GKTLAVLGFGKVGSEVARRAKGLG---MH-VIAHDPY-A-PADR-ARAIGVDL-VSFDEAIATADFISLHMPLTPATSKV 268 (600)
Q Consensus 197 gktiGIIGlG~IG~~vA~~l~~~g---~~-V~~~d~~-~-~~~~-a~~~g~~~-~~l~ell~~aDvV~l~~Pl~~~t~~l 268 (600)
+++|||||.|.+|+.+++.+...| .+ ++++++. . ..+. +...++.. .+++++++++|+|++|+|. ...+.+
T Consensus 4 ~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DiViiavp~-~~~~~v 82 (245)
T PRK07634 4 KHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRSNVEKLDQLQARYNVSTTTDWKQHVTSVDTIVLAMPP-SAHEEL 82 (245)
T ss_pred CCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCCCHHHHHHHHHHcCcEEeCChHHHHhcCCEEEEecCH-HHHHHH
Confidence 578999999999999999987554 33 7778764 2 2222 23356643 4788899999999999993 333333
Q ss_pred ccHhHhccCCCceEEEEccCCccccHHHHHHhHhcC
Q 007512 269 LNDETFGKMKKGVRIINVARGGVIDEEALVRALDSG 304 (600)
Q Consensus 269 i~~~~l~~mk~gailvNvarg~ivde~aL~~aL~~g 304 (600)
+.. .-..++ +.+||.++-| +..+.|.+.+..+
T Consensus 83 ~~~-l~~~~~-~~~vis~~~g--i~~~~l~~~~~~~ 114 (245)
T PRK07634 83 LAE-LSPLLS-NQLVVTVAAG--IGPSYLEERLPKG 114 (245)
T ss_pred HHH-HHhhcc-CCEEEEECCC--CCHHHHHHHcCCC
Confidence 321 111233 5688888765 3555566655543
|
|
| >cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00034 Score=65.27 Aligned_cols=81 Identities=25% Similarity=0.327 Sum_probs=67.2
Q ss_pred cceeccCCEEEEEecC-hhHHHHHHHhhcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEecCCCccccccc
Q 007512 191 VGVSLVGKTLAVLGFG-KVGSEVARRAKGLGMHVIAHDPYAPADRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVL 269 (600)
Q Consensus 191 ~g~~l~gktiGIIGlG-~IG~~vA~~l~~~g~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Pl~~~t~~li 269 (600)
.+.++.||++.|+|-+ .+|+.+|..|...|+.|..++.+. -++++.+++||+|+.+++.. +++
T Consensus 22 ~~~~~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t------------~~l~~~v~~ADIVvsAtg~~----~~i 85 (140)
T cd05212 22 EGVRLDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKT------------IQLQSKVHDADVVVVGSPKP----EKV 85 (140)
T ss_pred cCCCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCC------------cCHHHHHhhCCEEEEecCCC----Ccc
Confidence 4779999999999987 578999999999999999998643 15788899999999999844 457
Q ss_pred cHhHhccCCCceEEEEccCCc
Q 007512 270 NDETFGKMKKGVRIINVARGG 290 (600)
Q Consensus 270 ~~~~l~~mk~gailvNvarg~ 290 (600)
+.++ +|||++++|++...
T Consensus 86 ~~~~---ikpGa~Vidvg~~~ 103 (140)
T cd05212 86 PTEW---IKPGATVINCSPTK 103 (140)
T ss_pred CHHH---cCCCCEEEEcCCCc
Confidence 6655 58999999998654
|
NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional |
| >PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00017 Score=74.81 Aligned_cols=81 Identities=16% Similarity=0.271 Sum_probs=67.7
Q ss_pred cceeccCCEEEEEecC-hhHHHHHHHhhcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEecCCCccccccc
Q 007512 191 VGVSLVGKTLAVLGFG-KVGSEVARRAKGLGMHVIAHDPYAPADRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVL 269 (600)
Q Consensus 191 ~g~~l~gktiGIIGlG-~IG~~vA~~l~~~g~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Pl~~~t~~li 269 (600)
.+.++.||++.|||-| .+|+.+|..|...|+.|..++.+. .++.+.+++||+|+.+++ ..+++
T Consensus 151 ~~i~l~Gk~vvVvGrs~~VG~Pla~lL~~~gAtVtv~hs~t------------~~l~~~~~~ADIvV~AvG----~p~~i 214 (285)
T PRK14191 151 YHIEIKGKDVVIIGASNIVGKPLAMLMLNAGASVSVCHILT------------KDLSFYTQNADIVCVGVG----KPDLI 214 (285)
T ss_pred hCCCCCCCEEEEECCCchhHHHHHHHHHHCCCEEEEEeCCc------------HHHHHHHHhCCEEEEecC----CCCcC
Confidence 4679999999999999 999999999999999999886542 136788999999999997 24567
Q ss_pred cHhHhccCCCceEEEEccCCc
Q 007512 270 NDETFGKMKKGVRIINVARGG 290 (600)
Q Consensus 270 ~~~~l~~mk~gailvNvarg~ 290 (600)
..+++ |+|+++||+|-..
T Consensus 215 ~~~~v---k~GavVIDvGi~~ 232 (285)
T PRK14191 215 KASMV---KKGAVVVDIGINR 232 (285)
T ss_pred CHHHc---CCCcEEEEeeccc
Confidence 76655 9999999998544
|
|
| >PTZ00431 pyrroline carboxylate reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00013 Score=74.86 Aligned_cols=122 Identities=19% Similarity=0.206 Sum_probs=75.9
Q ss_pred CCEEEEEecChhHHHHHHHhhcCC----CEEEEECCCCChhHHHHcCCc-ccCHHHHhccCCEEEEecCCCccccccccH
Q 007512 197 GKTLAVLGFGKVGSEVARRAKGLG----MHVIAHDPYAPADRARAIGVD-LVSFDEAIATADFISLHMPLTPATSKVLND 271 (600)
Q Consensus 197 gktiGIIGlG~IG~~vA~~l~~~g----~~V~~~d~~~~~~~a~~~g~~-~~~l~ell~~aDvV~l~~Pl~~~t~~li~~ 271 (600)
.++|||||+|+||+++++.+..-+ -+++++|++... .++. ..+..+++.+||+|++|+| ...+..++.+
T Consensus 3 ~mkI~iIG~G~mG~ai~~~l~~~~~~~~~~i~~~~~~~~~-----~~~~~~~~~~~~~~~~D~Vilavk-p~~~~~vl~~ 76 (260)
T PTZ00431 3 NIRVGFIGLGKMGSALAYGIENSNIIGKENIYYHTPSKKN-----TPFVYLQSNEELAKTCDIIVLAVK-PDLAGKVLLE 76 (260)
T ss_pred CCEEEEECccHHHHHHHHHHHhCCCCCcceEEEECCChhc-----CCeEEeCChHHHHHhCCEEEEEeC-HHHHHHHHHH
Confidence 468999999999999999998654 359999886421 2332 2367778899999999998 4445555543
Q ss_pred hHhccCCCceEEEEccCCccccHHHHHHhHhcC-CceEEEEeccCCCCCCCCCccccCCcEEEcCCC
Q 007512 272 ETFGKMKKGVRIINVARGGVIDEEALVRALDSG-RVAQAALDVFTEEPPPADSKLVQHERVTVTPHL 337 (600)
Q Consensus 272 ~~l~~mk~gailvNvarg~ivde~aL~~aL~~g-~i~ga~lDv~~~EP~~~~~~L~~~~nvilTPH~ 337 (600)
....++++.+|.+++-- ..+.+.+.+... .+. . .-| .-.-++....++++|.-
T Consensus 77 -i~~~l~~~~iIS~~aGi---~~~~l~~~~~~~~~vv----r---~mP--n~p~~~g~g~t~i~~~~ 130 (260)
T PTZ00431 77 -IKPYLGSKLLISICGGL---NLKTLEEMVGVEAKIV----R---VMP--NTPSLVGQGSLVFCANN 130 (260)
T ss_pred -HHhhccCCEEEEEeCCc---cHHHHHHHcCCCCeEE----E---ECC--CchhHhcceeEEEEeCC
Confidence 22335566666665433 344444444332 221 1 222 11235666777888753
|
|
| >PRK06522 2-dehydropantoate 2-reductase; Reviewed | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.0004 Score=72.29 Aligned_cols=107 Identities=19% Similarity=0.185 Sum_probs=72.2
Q ss_pred CEEEEEecChhHHHHHHHhhcCCCEEEEECCCC-ChhHHHHcCCcc------------cCHHHHhccCCEEEEecCCCcc
Q 007512 198 KTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYA-PADRARAIGVDL------------VSFDEAIATADFISLHMPLTPA 264 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~-~~~~a~~~g~~~------------~~l~ell~~aDvV~l~~Pl~~~ 264 (600)
++|+|||.|.||+.+|..|...|.+|..++++. ..+...+.|... .+..++ +.+|+|++++|.. +
T Consensus 1 m~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~d~vila~k~~-~ 78 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALAQAGHDVTLVARRGAHLDALNENGLRLEDGEITVPVLAADDPAEL-GPQDLVILAVKAY-Q 78 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEECChHHHHHHHHcCCcccCCceeecccCCCChhHc-CCCCEEEEecccc-c
Confidence 379999999999999999998899999999854 333334445421 235554 8999999999944 3
Q ss_pred ccccccHhHhccCCCceEEEEccCCccccHHHHHHhHhcCCceE
Q 007512 265 TSKVLNDETFGKMKKGVRIINVARGGVIDEEALVRALDSGRVAQ 308 (600)
Q Consensus 265 t~~li~~~~l~~mk~gailvNvarg~ivde~aL~~aL~~g~i~g 308 (600)
+..++. .....+.+++.||...-| +-.++.+.+.+....+.+
T Consensus 79 ~~~~~~-~l~~~l~~~~~iv~~~nG-~~~~~~l~~~~~~~~i~~ 120 (304)
T PRK06522 79 LPAALP-SLAPLLGPDTPVLFLQNG-VGHLEELAAYIGPERVLG 120 (304)
T ss_pred HHHHHH-HHhhhcCCCCEEEEecCC-CCcHHHHHHhcCcccEEE
Confidence 444432 233346677888887766 223555666565555543
|
|
| >COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00033 Score=72.00 Aligned_cols=104 Identities=26% Similarity=0.335 Sum_probs=77.5
Q ss_pred CEEEEEecChhHHHHHHHhhcCC----CEEEEECCCCC-h-hHHHHcCCc-ccCHHHHhccCCEEEEecCCCcccccccc
Q 007512 198 KTLAVLGFGKVGSEVARRAKGLG----MHVIAHDPYAP-A-DRARAIGVD-LVSFDEAIATADFISLHMPLTPATSKVLN 270 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~g----~~V~~~d~~~~-~-~~a~~~g~~-~~~l~ell~~aDvV~l~~Pl~~~t~~li~ 270 (600)
++|||||.|+||+.++..|..-| .+|++.+|... . ..+.++|+. ..+.+++..++|+|++++. |+ .-
T Consensus 2 ~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e~~~~l~~~~g~~~~~~~~~~~~~advv~LavK--Pq----~~ 75 (266)
T COG0345 2 MKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNRSEEKRAALAAEYGVVTTTDNQEAVEEADVVFLAVK--PQ----DL 75 (266)
T ss_pred ceEEEEccCHHHHHHHHHHHhcCCCCcceEEEeCCCHHHHHHHHHHcCCcccCcHHHHHhhCCEEEEEeC--hH----hH
Confidence 58999999999999999999777 68999999873 2 255677776 3467789999999999996 32 12
Q ss_pred HhHhccCC---CceEEEEccCCccccHHHHHHhHhcCCceEE
Q 007512 271 DETFGKMK---KGVRIINVARGGVIDEEALVRALDSGRVAQA 309 (600)
Q Consensus 271 ~~~l~~mk---~gailvNvarg~ivde~aL~~aL~~g~i~ga 309 (600)
.+.+..++ ++.+||.++-|- ..+.|.+++.+.++..+
T Consensus 76 ~~vl~~l~~~~~~~lvISiaAGv--~~~~l~~~l~~~~vvR~ 115 (266)
T COG0345 76 EEVLSKLKPLTKDKLVISIAAGV--SIETLERLLGGLRVVRV 115 (266)
T ss_pred HHHHHHhhcccCCCEEEEEeCCC--CHHHHHHHcCCCceEEe
Confidence 44555565 688999998775 46666666664455433
|
|
| >PRK00045 hemA glutamyl-tRNA reductase; Reviewed | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00015 Score=79.76 Aligned_cols=92 Identities=20% Similarity=0.350 Sum_probs=67.5
Q ss_pred eccCCEEEEEecChhHHHHHHHhhcCCC-EEEEECCCCCh--hHHHHcCCccc---CHHHHhccCCEEEEecCCCccccc
Q 007512 194 SLVGKTLAVLGFGKVGSEVARRAKGLGM-HVIAHDPYAPA--DRARAIGVDLV---SFDEAIATADFISLHMPLTPATSK 267 (600)
Q Consensus 194 ~l~gktiGIIGlG~IG~~vA~~l~~~g~-~V~~~d~~~~~--~~a~~~g~~~~---~l~ell~~aDvV~l~~Pl~~~t~~ 267 (600)
.+.|++++|||.|.||+.+++.|+..|. +|+++++.... ..+...|.... ++.+.+.++|+|+.|+|.. ..
T Consensus 179 ~~~~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~l~~aDvVI~aT~s~---~~ 255 (423)
T PRK00045 179 DLSGKKVLVIGAGEMGELVAKHLAEKGVRKITVANRTLERAEELAEEFGGEAIPLDELPEALAEADIVISSTGAP---HP 255 (423)
T ss_pred CccCCEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcCCcEeeHHHHHHHhccCCEEEECCCCC---Cc
Confidence 3678999999999999999999999997 89999987632 24455554333 4566788999999998843 34
Q ss_pred cccHhHhccC-----CCceEEEEccC
Q 007512 268 VLNDETFGKM-----KKGVRIINVAR 288 (600)
Q Consensus 268 li~~~~l~~m-----k~gailvNvar 288 (600)
++..+.+..+ +.+.+++|.+-
T Consensus 256 ~i~~~~l~~~~~~~~~~~~vviDla~ 281 (423)
T PRK00045 256 IIGKGMVERALKARRHRPLLLVDLAV 281 (423)
T ss_pred EEcHHHHHHHHhhccCCCeEEEEeCC
Confidence 4666666543 24577777763
|
|
| >PRK12921 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00024 Score=74.15 Aligned_cols=108 Identities=20% Similarity=0.191 Sum_probs=72.8
Q ss_pred CEEEEEecChhHHHHHHHhhcCCCEEEEECCCCChhHHHHcCCc--------------ccCHHHHhccCCEEEEecCCCc
Q 007512 198 KTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPADRARAIGVD--------------LVSFDEAIATADFISLHMPLTP 263 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~~~~a~~~g~~--------------~~~l~ell~~aDvV~l~~Pl~~ 263 (600)
++|+|||.|.||..+|..|...|.+|..|++....+...+.|.. ..+.++....+|+|++|+|..
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vilavk~~- 79 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLEAGRDVTFLVRPKRAKALRERGLVIRSDHGDAVVPGPVITDPEELTGPFDLVILAVKAY- 79 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCceEEEecHHHHHHHHhCCeEEEeCCCeEEecceeecCHHHccCCCCEEEEEeccc-
Confidence 47999999999999999999889999999982233333444431 124556668999999999943
Q ss_pred cccccccHhHhccCCCceEEEEccCCccccHHHHHHhHhcCCceE
Q 007512 264 ATSKVLNDETFGKMKKGVRIINVARGGVIDEEALVRALDSGRVAQ 308 (600)
Q Consensus 264 ~t~~li~~~~l~~mk~gailvNvarg~ivde~aL~~aL~~g~i~g 308 (600)
.+...+ +.....++++.+|+.+.-| +-.++.+.+.+.+.++.+
T Consensus 80 ~~~~~~-~~l~~~~~~~~~ii~~~nG-~~~~~~l~~~~~~~~v~~ 122 (305)
T PRK12921 80 QLDAAI-PDLKPLVGEDTVIIPLQNG-IGQLEQLEPYFGRERVLG 122 (305)
T ss_pred CHHHHH-HHHHhhcCCCCEEEEeeCC-CChHHHHHHhCCcccEEE
Confidence 344433 2233345678888877655 334666766676655543
|
|
| >PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00014 Score=75.15 Aligned_cols=81 Identities=19% Similarity=0.247 Sum_probs=68.5
Q ss_pred cceeccCCEEEEEecC-hhHHHHHHHhhcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEecCCCccccccc
Q 007512 191 VGVSLVGKTLAVLGFG-KVGSEVARRAKGLGMHVIAHDPYAPADRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVL 269 (600)
Q Consensus 191 ~g~~l~gktiGIIGlG-~IG~~vA~~l~~~g~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Pl~~~t~~li 269 (600)
.+.++.|+++.|+|.+ ..|+.+|..+..+|..|..++.+. -++.+.+++||+|+.+++.. +++
T Consensus 146 ~~i~l~Gk~V~ViGrs~~vGrpla~lL~~~~atVtv~hs~t------------~~L~~~~~~ADIvI~Avgk~----~lv 209 (279)
T PRK14178 146 YKISIAGKRAVVVGRSIDVGRPMAALLLNADATVTICHSKT------------ENLKAELRQADILVSAAGKA----GFI 209 (279)
T ss_pred cCCCCCCCEEEEECCCccccHHHHHHHHhCCCeeEEEecCh------------hHHHHHHhhCCEEEECCCcc----ccc
Confidence 4679999999999999 999999999999999999887542 14788999999999999732 567
Q ss_pred cHhHhccCCCceEEEEccCCc
Q 007512 270 NDETFGKMKKGVRIINVARGG 290 (600)
Q Consensus 270 ~~~~l~~mk~gailvNvarg~ 290 (600)
.++.+ |||+++||+|-..
T Consensus 210 ~~~~v---k~GavVIDVgi~~ 227 (279)
T PRK14178 210 TPDMV---KPGATVIDVGINQ 227 (279)
T ss_pred CHHHc---CCCcEEEEeeccc
Confidence 77775 9999999998543
|
|
| >PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00021 Score=74.14 Aligned_cols=80 Identities=19% Similarity=0.316 Sum_probs=66.8
Q ss_pred cceeccCCEEEEEecCh-hHHHHHHHhhcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEecCCCccccccc
Q 007512 191 VGVSLVGKTLAVLGFGK-VGSEVARRAKGLGMHVIAHDPYAPADRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVL 269 (600)
Q Consensus 191 ~g~~l~gktiGIIGlG~-IG~~vA~~l~~~g~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Pl~~~t~~li 269 (600)
.+.++.||++.|||.|. +|+.+|..|...|+.|..++.+. -++.+..++||+|+.++.. .+++
T Consensus 158 ~~i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVtv~hs~T------------~~l~~~~~~ADIvv~AvG~----p~~i 221 (287)
T PRK14176 158 YGVDIEGKNAVIVGHSNVVGKPMAAMLLNRNATVSVCHVFT------------DDLKKYTLDADILVVATGV----KHLI 221 (287)
T ss_pred cCCCCCCCEEEEECCCcccHHHHHHHHHHCCCEEEEEeccC------------CCHHHHHhhCCEEEEccCC----cccc
Confidence 46799999999999999 99999999999999999988542 1478889999999998873 2456
Q ss_pred cHhHhccCCCceEEEEccCC
Q 007512 270 NDETFGKMKKGVRIINVARG 289 (600)
Q Consensus 270 ~~~~l~~mk~gailvNvarg 289 (600)
..+ .+|+|+++||+|--
T Consensus 222 ~~~---~vk~gavVIDvGin 238 (287)
T PRK14176 222 KAD---MVKEGAVIFDVGIT 238 (287)
T ss_pred CHH---HcCCCcEEEEeccc
Confidence 655 46999999999853
|
|
| >PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00056 Score=80.09 Aligned_cols=172 Identities=19% Similarity=0.205 Sum_probs=104.0
Q ss_pred CEEEEEecChhHHHHHHHhhcCCCEEEEECCCCC-hhHH-----------HHcC-------------Ccc-cCHHHHhcc
Q 007512 198 KTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAP-ADRA-----------RAIG-------------VDL-VSFDEAIAT 251 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~-~~~a-----------~~~g-------------~~~-~~l~ell~~ 251 (600)
++|+|||.|.||..||..+...|++|..||++.. .+.+ .+.| +.. .++ +.+++
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 392 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPTLDY-AGFER 392 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCH-HHhcC
Confidence 5899999999999999999988999999998762 2211 1111 111 245 45799
Q ss_pred CCEEEEecCCCccccccccHhHhccCCCceEEEEccCCccccHHHHHHhHhc-CCceEEEEeccCCCCCCCCCccccCCc
Q 007512 252 ADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVIDEEALVRALDS-GRVAQAALDVFTEEPPPADSKLVQHER 330 (600)
Q Consensus 252 aDvV~l~~Pl~~~t~~li~~~~l~~mk~gailvNvarg~ivde~aL~~aL~~-g~i~ga~lDv~~~EP~~~~~~L~~~~n 330 (600)
||+|+=++|-..+.++-+-.+.-..++++++|....++= ....|.+++.. .++ .+++-|.+- ..-||.|
T Consensus 393 aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl--~i~~la~~~~~p~r~--~g~Hff~P~---~~~~lVE--- 462 (715)
T PRK11730 393 VDVVVEAVVENPKVKAAVLAEVEQKVREDTILASNTSTI--SISLLAKALKRPENF--CGMHFFNPV---HRMPLVE--- 462 (715)
T ss_pred CCEEEecccCcHHHHHHHHHHHHhhCCCCcEEEEcCCCC--CHHHHHhhcCCCccE--EEEecCCcc---cccceEE---
Confidence 999999999888877766666666789998886654443 34455555543 345 566666433 2346664
Q ss_pred EEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCccccCCCCChhhhhccc-chHHHHHHH
Q 007512 331 VTVTPHLGASTMEAQEGVAIEIAEAVVGALKGELAATAVNAPMVPAEVLTELK-PFVELAEKL 392 (600)
Q Consensus 331 vilTPH~~~~t~ea~~~~~~~~~~~l~~~l~g~~~~~~vn~~~i~~~~~~~~~-p~~~la~~l 392 (600)
|+-.||. + .+ +++.+.++++......++- ...+--+.+.+. ||+..|.+|
T Consensus 463 vv~g~~T--~-~~--------~~~~~~~~~~~lgk~pv~v-~d~pGfv~nRi~~~~~~ea~~l 513 (715)
T PRK11730 463 VIRGEKT--S-DE--------TIATVVAYASKMGKTPIVV-NDCPGFFVNRVLFPYFAGFSQL 513 (715)
T ss_pred eeCCCCC--C-HH--------HHHHHHHHHHHhCCceEEe-cCcCchhHHHHHHHHHHHHHHH
Confidence 4434432 2 22 2333444443322222222 234444555554 777766555
|
|
| >PRK08577 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00075 Score=62.58 Aligned_cols=75 Identities=13% Similarity=0.232 Sum_probs=60.4
Q ss_pred ccEEEEEecCCCCChhhHHhhhhcCCccccceEeeeecCCCcE--EEEEEeCCC--CcHHHHHHHhcCCCcceEEEeeC
Q 007512 526 GSIILCRQVDQPGMIGTVGSILGSENVNVSFMSVGRVAPRKHA--VMAIGVDEQ--PRKETLKKIGDVPAIEEFVFLKL 600 (600)
Q Consensus 526 ~~~Liv~~~D~pG~Ia~V~~iL~~~~INIa~m~v~R~~~g~~a--l~~i~~D~~--~~~~~l~~l~~~~~v~~v~~i~l 600 (600)
.+.+-+...|+||+++.|++.|+++++||.+++......++.+ .+.+++++. .-.+++++|+++++|.+++++++
T Consensus 56 ~~~I~V~~~Dr~GvLa~I~~~l~~~~inI~~i~~~~~~~~~~~~i~l~vev~~~~~~l~~l~~~L~~l~~V~~V~~~~~ 134 (136)
T PRK08577 56 LVEIELVVEDRPGVLAKITGLLAEHGVDILATECEELKRGELAECVIIVDLSKSDIDLEELEEELKKLEEVKEVEIRQI 134 (136)
T ss_pred EEEEEEEEcCCCCHHHHHHHHHHHCCCCEEEEEEEEecCCCEEEEEEEEEeCCchhhHHHHHHHHHcCCCEEEEEEEEc
Confidence 4567788999999999999999999999999998655445544 444566654 23589999999999999998875
|
|
| >PRK13562 acetolactate synthase 1 regulatory subunit; Provisional | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00024 Score=60.07 Aligned_cols=74 Identities=18% Similarity=0.168 Sum_probs=60.8
Q ss_pred cEEEEEecCCCCChhhHHhhhhcCCccccceEeeeecCCCcEEEEEEeC---CCCcHHHHHHHhcCCCcceEEEeeC
Q 007512 527 SIILCRQVDQPGMIGTVGSILGSENVNVSFMSVGRVAPRKHAVMAIGVD---EQPRKETLKKIGDVPAIEEFVFLKL 600 (600)
Q Consensus 527 ~~Liv~~~D~pG~Ia~V~~iL~~~~INIa~m~v~R~~~g~~al~~i~~D---~~~~~~~l~~l~~~~~v~~v~~i~l 600 (600)
+++-+...|+||++++|++++...|+||.++.++..+..+-+=|.|.++ +..=+.+.++|.++..|.++..++|
T Consensus 3 ~~isvlVeN~~GVL~Rit~lFsRRg~NI~SLtvg~Te~~~iSRmtivv~~~d~~~ieqI~kQL~KlidVikV~~~~~ 79 (84)
T PRK13562 3 RILKLQVADQVSTLNRITSAFVRLQYNIDTLHVTHSEQPGISNMEIQVDIQDDTSLHILIKKLKQQINVLTVECYDL 79 (84)
T ss_pred EEEEEEEECCCCHHHHHHHHHhccCcCeeeEEecccCCCCceEEEEEEeCCCHHHHHHHHHHHhCCccEEEEEEeec
Confidence 6777888899999999999999999999999999888777777766664 2223478888999999998886654
|
|
| >cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2 | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0013 Score=66.25 Aligned_cols=153 Identities=19% Similarity=0.193 Sum_probs=97.7
Q ss_pred ceeccCCEEEEEecChhHHHHHHHhhcCCC---EEEEECCC----CCh---------hHHHHcCCc-c-cCHHHHhccCC
Q 007512 192 GVSLVGKTLAVLGFGKVGSEVARRAKGLGM---HVIAHDPY----APA---------DRARAIGVD-L-VSFDEAIATAD 253 (600)
Q Consensus 192 g~~l~gktiGIIGlG~IG~~vA~~l~~~g~---~V~~~d~~----~~~---------~~a~~~g~~-~-~~l~ell~~aD 253 (600)
+..+.++++.|+|.|..|+.+|..|...|+ +|+.+|++ ... +.++..+.. . .++.+.+.++|
T Consensus 20 g~~l~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~~~~~~~~~~~l~~~l~~~d 99 (226)
T cd05311 20 GKKIEEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKGVIYEGREDDLNPDKNEIAKETNPEKTGGTLKEALKGAD 99 (226)
T ss_pred CCCccCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCCccccccchhhhHHHHHHHHHhccCcccCCHHHHHhcCC
Confidence 456889999999999999999999998897 59999987 221 123333211 1 36778889999
Q ss_pred EEEEecCCCccccccccHhHhccCCCceEEEEccCCccccHHHHHHhHhcCC-ceEEEEeccCCCCCCCCCccccCCcEE
Q 007512 254 FISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVIDEEALVRALDSGR-VAQAALDVFTEEPPPADSKLVQHERVT 332 (600)
Q Consensus 254 vV~l~~Pl~~~t~~li~~~~l~~mk~gailvNvarg~ivde~aL~~aL~~g~-i~ga~lDv~~~EP~~~~~~L~~~~nvi 332 (600)
+|+.++| .++++.+.++.|+++.++.+.+.-. .+.-+.++.+.|- +..-| .+.+ ..+.-|++
T Consensus 100 vlIgaT~-----~G~~~~~~l~~m~~~~ivf~lsnP~--~e~~~~~A~~~ga~i~a~G-----~~~~-----~~Q~nn~~ 162 (226)
T cd05311 100 VFIGVSR-----PGVVKKEMIKKMAKDPIVFALANPV--PEIWPEEAKEAGADIVATG-----RSDF-----PNQVNNVL 162 (226)
T ss_pred EEEeCCC-----CCCCCHHHHHhhCCCCEEEEeCCCC--CcCCHHHHHHcCCcEEEeC-----CCCC-----ccccceee
Confidence 9999987 4678888999999999999888322 3333333333343 33333 1211 22456788
Q ss_pred EcCCCCCCcH-----HHHHHHHHHHHHHHHHHHc
Q 007512 333 VTPHLGASTM-----EAQEGVAIEIAEAVVGALK 361 (600)
Q Consensus 333 lTPH~~~~t~-----ea~~~~~~~~~~~l~~~l~ 361 (600)
+-|-+|--.. .--++|-..+++.+.++..
T Consensus 163 ~fPg~~~g~~~~~~~~i~~~m~~~aa~~la~~~~ 196 (226)
T cd05311 163 GFPGIFRGALDVRATKITEEMKLAAAEAIADLAE 196 (226)
T ss_pred ecchhhHHHHHcCCcCCCHHHHHHHHHHHHhhCC
Confidence 8887653211 1113444445555555544
|
Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph |
| >PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00021 Score=59.67 Aligned_cols=68 Identities=15% Similarity=0.357 Sum_probs=51.9
Q ss_pred EEEEecCCCCChhhHHhhhhcCCccccceEeeeecCCCcEEEEEEeCCCCcH---HHHHHHhcCCCcceEE
Q 007512 529 ILCRQVDQPGMIGTVGSILGSENVNVSFMSVGRVAPRKHAVMAIGVDEQPRK---ETLKKIGDVPAIEEFV 596 (600)
Q Consensus 529 Liv~~~D~pG~Ia~V~~iL~~~~INIa~m~v~R~~~g~~al~~i~~D~~~~~---~~l~~l~~~~~v~~v~ 596 (600)
|-+...|+||+++.|++.+++.++||.+++.....+++.+.+.+.++-.-.+ .++++|+++|+|.+|+
T Consensus 9 l~i~~~dr~GlL~dI~~~i~~~~~nI~~i~~~~~~~~~~~~~~l~v~V~d~~~L~~ii~~L~~i~~V~~V~ 79 (80)
T PF13291_consen 9 LRIEAEDRPGLLADITSVISENGVNIRSINARTNKDDGTARITLTVEVKDLEHLNQIIRKLRQIPGVISVE 79 (80)
T ss_dssp EEEEEE--TTHHHHHHHHHHCSSSEEEEEEEEE--ETTEEEEEEEEEESSHHHHHHHHHHHCTSTTEEEEE
T ss_pred EEEEEEcCCCHHHHHHHHHHHCCCCeEEEEeEEeccCCEEEEEEEEEECCHHHHHHHHHHHHCCCCeeEEE
Confidence 4566889999999999999999999999999875456677666665533222 7899999999999875
|
|
| >PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00029 Score=73.37 Aligned_cols=81 Identities=19% Similarity=0.283 Sum_probs=66.4
Q ss_pred cceeccCCEEEEEecCh-hHHHHHHHhhcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEecCCCccccccc
Q 007512 191 VGVSLVGKTLAVLGFGK-VGSEVARRAKGLGMHVIAHDPYAPADRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVL 269 (600)
Q Consensus 191 ~g~~l~gktiGIIGlG~-IG~~vA~~l~~~g~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Pl~~~t~~li 269 (600)
.+.++.||++.|||.|. .|+.+|..|...|++|..+++.. .++.+.+++||+|+.+++ .+ +++
T Consensus 153 ~~i~l~Gk~vvViG~gg~vGkpia~~L~~~gatVtv~~~~t------------~~L~~~~~~aDIvI~AtG-~~---~~v 216 (283)
T PRK14192 153 YNIELAGKHAVVVGRSAILGKPMAMMLLNANATVTICHSRT------------QNLPELVKQADIIVGAVG-KP---ELI 216 (283)
T ss_pred cCCCCCCCEEEEECCcHHHHHHHHHHHHhCCCEEEEEeCCc------------hhHHHHhccCCEEEEccC-CC---CcC
Confidence 46789999999999998 99999999999999999988632 146777899999999997 33 256
Q ss_pred cHhHhccCCCceEEEEccCCc
Q 007512 270 NDETFGKMKKGVRIINVARGG 290 (600)
Q Consensus 270 ~~~~l~~mk~gailvNvarg~ 290 (600)
+.+. +|+|++++|++-..
T Consensus 217 ~~~~---lk~gavViDvg~n~ 234 (283)
T PRK14192 217 KKDW---IKQGAVVVDAGFHP 234 (283)
T ss_pred CHHH---cCCCCEEEEEEEee
Confidence 6544 69999999998543
|
|
| >PLN00203 glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00019 Score=80.61 Aligned_cols=93 Identities=13% Similarity=0.148 Sum_probs=68.6
Q ss_pred eccCCEEEEEecChhHHHHHHHhhcCCC-EEEEECCCCCh--hHHHHc-CC--cc---cCHHHHhccCCEEEEecCCCcc
Q 007512 194 SLVGKTLAVLGFGKVGSEVARRAKGLGM-HVIAHDPYAPA--DRARAI-GV--DL---VSFDEAIATADFISLHMPLTPA 264 (600)
Q Consensus 194 ~l~gktiGIIGlG~IG~~vA~~l~~~g~-~V~~~d~~~~~--~~a~~~-g~--~~---~~l~ell~~aDvV~l~~Pl~~~ 264 (600)
.+.+++|+|||.|.||+.+++.|...|. +|+++++.... ..+... +. .. .++.+.+.+||+|+.|+|..
T Consensus 263 ~l~~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~~~~g~~i~~~~~~dl~~al~~aDVVIsAT~s~-- 340 (519)
T PLN00203 263 SHASARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSEERVAALREEFPDVEIIYKPLDEMLACAAEADVVFTSTSSE-- 340 (519)
T ss_pred CCCCCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhCCCceEeecHhhHHHHHhcCCEEEEccCCC--
Confidence 3779999999999999999999999996 79999987632 222333 22 11 25667889999999998743
Q ss_pred ccccccHhHhccCCC-------ceEEEEccCC
Q 007512 265 TSKVLNDETFGKMKK-------GVRIINVARG 289 (600)
Q Consensus 265 t~~li~~~~l~~mk~-------gailvNvarg 289 (600)
..++.++.++.+++ ..+|||.+-.
T Consensus 341 -~pvI~~e~l~~~~~~~~~~~~~~~~IDLAvP 371 (519)
T PLN00203 341 -TPLFLKEHVEALPPASDTVGGKRLFVDISVP 371 (519)
T ss_pred -CCeeCHHHHHHhhhcccccCCCeEEEEeCCC
Confidence 45678888877643 2478888743
|
|
| >TIGR02437 FadB fatty oxidation complex, alpha subunit FadB | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.0011 Score=77.70 Aligned_cols=172 Identities=19% Similarity=0.197 Sum_probs=105.6
Q ss_pred CEEEEEecChhHHHHHHHhhcCCCEEEEECCCCC-hhHH-----------HHcC-------------Ccc-cCHHHHhcc
Q 007512 198 KTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAP-ADRA-----------RAIG-------------VDL-VSFDEAIAT 251 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~-~~~a-----------~~~g-------------~~~-~~l~ell~~ 251 (600)
++|+|||.|.||..||..+...|++|..||++.. .+.+ .+.| +.. .++ +.+++
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 392 (714)
T TIGR02437 314 KQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPTLSY-AGFDN 392 (714)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCH-HHhcC
Confidence 5799999999999999999988999999998762 2211 1111 111 234 45799
Q ss_pred CCEEEEecCCCccccccccHhHhccCCCceEEEEccCCccccHHHHHHhHhc-CCceEEEEeccCCCCCCCCCccccCCc
Q 007512 252 ADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVIDEEALVRALDS-GRVAQAALDVFTEEPPPADSKLVQHER 330 (600)
Q Consensus 252 aDvV~l~~Pl~~~t~~li~~~~l~~mk~gailvNvarg~ivde~aL~~aL~~-g~i~ga~lDv~~~EP~~~~~~L~~~~n 330 (600)
||+|+=++|-..+.+.-+-.+.=+.++|+++|-...++= ...++...++. .++ .|++-|.+- ..-||.|
T Consensus 393 aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasnTS~l--~i~~ia~~~~~p~r~--ig~Hff~P~---~~~~lvE--- 462 (714)
T TIGR02437 393 VDIVVEAVVENPKVKAAVLAEVEQHVREDAILASNTSTI--SISLLAKALKRPENF--CGMHFFNPV---HRMPLVE--- 462 (714)
T ss_pred CCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCC--CHHHHHhhcCCcccE--EEEecCCCc---ccCceEe---
Confidence 999999999887777666566556789998876554433 44555555543 345 666666433 2356765
Q ss_pred EEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCccccCCCCChhhhhccc-chHHHHHHH
Q 007512 331 VTVTPHLGASTMEAQEGVAIEIAEAVVGALKGELAATAVNAPMVPAEVLTELK-PFVELAEKL 392 (600)
Q Consensus 331 vilTPH~~~~t~ea~~~~~~~~~~~l~~~l~g~~~~~~vn~~~i~~~~~~~~~-p~~~la~~l 392 (600)
+.||-..+ .++++.+.++++...-..++- ...+--+.+.+. ||+..|.+|
T Consensus 463 --vv~g~~Ts---------~~~~~~~~~~~~~lgk~pv~v-~d~pGfi~NRl~~~~~~ea~~l 513 (714)
T TIGR02437 463 --VIRGEKSS---------DETIATVVAYASKMGKTPIVV-NDCPGFFVNRVLFPYFGGFSKL 513 (714)
T ss_pred --ecCCCCCC---------HHHHHHHHHHHHHcCCEEEEe-CCcccchHHHHHHHHHHHHHHH
Confidence 34443222 223344444444333222222 234455666654 888777766
|
Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399. |
| >PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00034 Score=72.38 Aligned_cols=79 Identities=16% Similarity=0.291 Sum_probs=66.2
Q ss_pred cceeccCCEEEEEecC-hhHHHHHHHhhcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEecCCCccccccc
Q 007512 191 VGVSLVGKTLAVLGFG-KVGSEVARRAKGLGMHVIAHDPYAPADRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVL 269 (600)
Q Consensus 191 ~g~~l~gktiGIIGlG-~IG~~vA~~l~~~g~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Pl~~~t~~li 269 (600)
.+.++.||++.|||-+ .+|+.+|..|...|..|..+..+. -++.+..++||+|+.++. . .+++
T Consensus 151 ~~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~AtVti~hs~T------------~~l~~~~~~ADIvV~AvG-k---p~~i 214 (281)
T PRK14183 151 YEIDVKGKDVCVVGASNIVGKPMAALLLNANATVDICHIFT------------KDLKAHTKKADIVIVGVG-K---PNLI 214 (281)
T ss_pred cCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC------------cCHHHHHhhCCEEEEecC-c---cccc
Confidence 4679999999999999 899999999998899999886542 147788999999999997 2 3567
Q ss_pred cHhHhccCCCceEEEEccC
Q 007512 270 NDETFGKMKKGVRIINVAR 288 (600)
Q Consensus 270 ~~~~l~~mk~gailvNvar 288 (600)
..+++ |+|+++||+|-
T Consensus 215 ~~~~v---k~gavvIDvGi 230 (281)
T PRK14183 215 TEDMV---KEGAIVIDIGI 230 (281)
T ss_pred CHHHc---CCCcEEEEeec
Confidence 76655 89999999984
|
|
| >PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00048 Score=59.64 Aligned_cols=74 Identities=12% Similarity=0.175 Sum_probs=60.2
Q ss_pred CccEEEEEecCCCCChhhHHhhhhcCCccccceEeeeecCCCcEEEEEEeCC-CCcHHHHHHHhcCCCcceEEEe
Q 007512 525 EGSIILCRQVDQPGMIGTVGSILGSENVNVSFMSVGRVAPRKHAVMAIGVDE-QPRKETLKKIGDVPAIEEFVFL 598 (600)
Q Consensus 525 ~~~~Liv~~~D~pG~Ia~V~~iL~~~~INIa~m~v~R~~~g~~al~~i~~D~-~~~~~~l~~l~~~~~v~~v~~i 598 (600)
..++|-+...|+||++++|+++++..|+||.++.++.....+-+=|.|.+.+ ..=+.+.++|.++..|.++..+
T Consensus 7 ~~~tisvlv~N~pGVL~RIaglFsRRgyNIeSLtvg~te~~~iSRmtivv~~~~~i~Qi~kQL~KLidVikV~~l 81 (96)
T PRK08178 7 DNVILELTVRNHPGVMSHVCGLFARRAFNVEGILCLPIQDGDKSRIWLLVNDDQRLEQMISQIEKLEDVLKVRRN 81 (96)
T ss_pred CCEEEEEEEECCcCHHHHHHHHHhcCCcCeeeEEEeecCCCCceEEEEEEcCchHHHHHHHHHhCCcCEEEEEEC
Confidence 3578888889999999999999999999999999998887777666555553 2333777888889888888765
|
|
| >PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00052 Score=57.19 Aligned_cols=72 Identities=8% Similarity=0.141 Sum_probs=59.2
Q ss_pred ccEEEEEecCCCCChhhHHhhhhcCCccccceEeeeecCCCcEEEEEEeCC-CCcHHHHHHHhcCCCcceEEE
Q 007512 526 GSIILCRQVDQPGMIGTVGSILGSENVNVSFMSVGRVAPRKHAVMAIGVDE-QPRKETLKKIGDVPAIEEFVF 597 (600)
Q Consensus 526 ~~~Liv~~~D~pG~Ia~V~~iL~~~~INIa~m~v~R~~~g~~al~~i~~D~-~~~~~~l~~l~~~~~v~~v~~ 597 (600)
.|+|-+...++||++++|++++...|.||..|.++....++.+-|.+.+++ ..-+.+.++|.++.+|.+|.+
T Consensus 3 ~~~lsi~v~n~pGVL~Ri~~lf~rRGfnI~sl~v~~t~~~~~sriti~v~~~~~i~ql~kQL~KL~dV~~V~~ 75 (76)
T PRK11152 3 QHQLTIKARFRPEVLERVLRVVRHRGFQVCSMNMTQNTDAQNINIELTVASERPIDLLSSQLNKLVDVAHVEI 75 (76)
T ss_pred eEEEEEEEECCccHHHHHHHHHhcCCeeeeeEEeeecCCCCEEEEEEEECCCchHHHHHHHHhcCcCeEEEEE
Confidence 367888888999999999999999999999999998777777766665553 334478888999998888865
|
|
| >PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00032 Score=74.97 Aligned_cols=93 Identities=19% Similarity=0.226 Sum_probs=71.1
Q ss_pred HHHHHHHhhcCCCEEEEECCCCC------hhHHHHcCCccc-CHHHHhccCCEEEEecCCCccccccccHhHhccCCCce
Q 007512 209 GSEVARRAKGLGMHVIAHDPYAP------ADRARAIGVDLV-SFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGV 281 (600)
Q Consensus 209 G~~vA~~l~~~g~~V~~~d~~~~------~~~a~~~g~~~~-~l~ell~~aDvV~l~~Pl~~~t~~li~~~~l~~mk~ga 281 (600)
|..+|.+|...|++|++||++.. .+...+.|+... +..+++++||+|++|+|....++.++ ......++++.
T Consensus 32 G~~MA~~La~aG~~V~v~Dr~~~~l~~~~~~~l~~~Gi~~asd~~eaa~~ADvVIlaVP~~~~v~~Vl-~~L~~~L~~g~ 110 (342)
T PRK12557 32 GSRMAIEFAEAGHDVVLAEPNRSILSEELWKKVEDAGVKVVSDDAEAAKHGEIHILFTPFGKKTVEIA-KNILPHLPENA 110 (342)
T ss_pred HHHHHHHHHhCCCeEEEEECCHHHhhHHHHHHHHHCCCEEeCCHHHHHhCCCEEEEECCCcHHHHHHH-HHHHhhCCCCC
Confidence 78999999988999999998763 123455677643 77888999999999999554366666 35667789999
Q ss_pred EEEEccCCccccH-HHHHHhHh
Q 007512 282 RIINVARGGVIDE-EALVRALD 302 (600)
Q Consensus 282 ilvNvarg~ivde-~aL~~aL~ 302 (600)
++||++.+..... +.+.+.+.
T Consensus 111 IVId~ST~~~~~~s~~l~~~l~ 132 (342)
T PRK12557 111 VICNTCTVSPVVLYYSLEGELR 132 (342)
T ss_pred EEEEecCCCHHHHHHHHHHHhc
Confidence 9999999877554 55656554
|
|
| >PRK06249 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.0023 Score=67.49 Aligned_cols=108 Identities=14% Similarity=0.172 Sum_probs=72.9
Q ss_pred CEEEEEecChhHHHHHHHhhcCCCEEEEECCCCChhHHHHcCCcc--------------cCHHHHhccCCEEEEecCCCc
Q 007512 198 KTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPADRARAIGVDL--------------VSFDEAIATADFISLHMPLTP 263 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~~~~a~~~g~~~--------------~~l~ell~~aDvV~l~~Pl~~ 263 (600)
++|+|||.|.||+.+|.+|...|.+|..+.+.. .+.....|+.. .+..+....+|+|++|+|...
T Consensus 6 m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vilavK~~~ 84 (313)
T PRK06249 6 PRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD-YEAVRENGLQVDSVHGDFHLPPVQAYRSAEDMPPCDWVLVGLKTTA 84 (313)
T ss_pred cEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC-HHHHHhCCeEEEeCCCCeeecCceEEcchhhcCCCCEEEEEecCCC
Confidence 589999999999999999999999999887754 33333434321 112234678999999999543
Q ss_pred cccccccHhHhccCCCceEEEEccCCccccHHHHHHhHhcCCceEE
Q 007512 264 ATSKVLNDETFGKMKKGVRIINVARGGVIDEEALVRALDSGRVAQA 309 (600)
Q Consensus 264 ~t~~li~~~~l~~mk~gailvNvarg~ivde~aL~~aL~~g~i~ga 309 (600)
+...+ +.....++++..++...-| +-.++.+.+.+...++.++
T Consensus 85 -~~~~~-~~l~~~~~~~~~iv~lqNG-~~~~e~l~~~~~~~~v~~g 127 (313)
T PRK06249 85 -NALLA-PLIPQVAAPDAKVLLLQNG-LGVEEQLREILPAEHLLGG 127 (313)
T ss_pred -hHhHH-HHHhhhcCCCCEEEEecCC-CCcHHHHHHHCCCCcEEEE
Confidence 44333 2223346778888877665 3356777777766666554
|
|
| >PLN02353 probable UDP-glucose 6-dehydrogenase | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0024 Score=71.12 Aligned_cols=134 Identities=16% Similarity=0.159 Sum_probs=80.4
Q ss_pred CEEEEEecChhHHHHHHHhhcC--CCEEEEECCCCChhHHHHcC--------------------Ccc-cCHHHHhccCCE
Q 007512 198 KTLAVLGFGKVGSEVARRAKGL--GMHVIAHDPYAPADRARAIG--------------------VDL-VSFDEAIATADF 254 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~--g~~V~~~d~~~~~~~a~~~g--------------------~~~-~~l~ell~~aDv 254 (600)
++|+|||+|.+|..+|..|... |++|++||.+...-.....| ... .++++.+++||+
T Consensus 2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~t~~~~~~i~~adv 81 (473)
T PLN02353 2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFFSTDVEKHVAEADI 81 (473)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEEEcCHHHHHhcCCE
Confidence 5799999999999999999855 69999999765322221111 111 245677899999
Q ss_pred EEEecCCCcccc------------ccc--cHhHhccCCCceEEEEccCCccccHHHHHHhHhcCCceEEEEe-ccCCCCC
Q 007512 255 ISLHMPLTPATS------------KVL--NDETFGKMKKGVRIINVARGGVIDEEALVRALDSGRVAQAALD-VFTEEPP 319 (600)
Q Consensus 255 V~l~~Pl~~~t~------------~li--~~~~l~~mk~gailvNvarg~ivde~aL~~aL~~g~i~ga~lD-v~~~EP~ 319 (600)
+++|+| ||... ++. -+..-..+++|.++|.-+...+=..+.+...+.+.. .|.-.+ +|-+|=+
T Consensus 82 i~I~V~-TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~~STvp~Gtt~~~~~~l~~~~-~g~~f~v~~~PErl 159 (473)
T PLN02353 82 VFVSVN-TPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNS-KGINFQILSNPEFL 159 (473)
T ss_pred EEEEeC-CCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEEeCCCCCChHHHHHHHHHhhC-CCCCeEEEECCCcc
Confidence 999998 33211 111 122344579999999888744434455555555421 010011 1445543
Q ss_pred CC---CCccccCCcEEE
Q 007512 320 PA---DSKLVQHERVTV 333 (600)
Q Consensus 320 ~~---~~~L~~~~nvil 333 (600)
.. -+.++..|++|+
T Consensus 160 ~~G~a~~d~~~p~riVi 176 (473)
T PLN02353 160 AEGTAIEDLFKPDRVLI 176 (473)
T ss_pred CCCCcccccCCCCEEEE
Confidence 32 245666777753
|
|
| >TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0014 Score=76.52 Aligned_cols=172 Identities=16% Similarity=0.141 Sum_probs=103.4
Q ss_pred CEEEEEecChhHHHHHHHhh-cCCCEEEEECCCCC-hhHH-----------HHcC-------------Ccc-cCHHHHhc
Q 007512 198 KTLAVLGFGKVGSEVARRAK-GLGMHVIAHDPYAP-ADRA-----------RAIG-------------VDL-VSFDEAIA 250 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~-~~g~~V~~~d~~~~-~~~a-----------~~~g-------------~~~-~~l~ell~ 250 (600)
++|+|||.|.||..+|..+. ..|++|..||++.. .+.+ .+.| +.. .++ +.++
T Consensus 305 ~~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~ 383 (699)
T TIGR02440 305 KKVGILGGGLMGGGIASVTATKAGIPVRIKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITGTTDY-RGFK 383 (699)
T ss_pred cEEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEEeCCh-HHhc
Confidence 57999999999999999987 57999999998752 1111 1111 112 244 4679
Q ss_pred cCCEEEEecCCCccccccccHhHhccCCCceEEEEccCCccccHHHHHHhHhc-CCceEEEEeccCCCCCCCCCccccCC
Q 007512 251 TADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVIDEEALVRALDS-GRVAQAALDVFTEEPPPADSKLVQHE 329 (600)
Q Consensus 251 ~aDvV~l~~Pl~~~t~~li~~~~l~~mk~gailvNvarg~ivde~aL~~aL~~-g~i~ga~lDv~~~EP~~~~~~L~~~~ 329 (600)
+||+|+=++|-..+.++-+-.+.-..++++++|....++= ....+..+++. .++ .+++-|. |+ ..-||.|
T Consensus 384 ~adlViEav~E~l~~K~~v~~~l~~~~~~~~ilasnTS~l--~i~~la~~~~~p~r~--~g~Hffn--P~-~~~~lVE-- 454 (699)
T TIGR02440 384 DVDIVIEAVFEDLALKHQMVKDIEQECAAHTIFASNTSSL--PIGQIAAAASRPENV--IGLHYFS--PV-EKMPLVE-- 454 (699)
T ss_pred cCCEEEEeccccHHHHHHHHHHHHhhCCCCcEEEeCCCCC--CHHHHHHhcCCcccE--EEEecCC--cc-ccCceEE--
Confidence 9999999999888777666566556689998876554443 34445555543 455 5666664 32 2346664
Q ss_pred cEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCccccCCCCChhhhhccc-chHHHHHHH
Q 007512 330 RVTVTPHLGASTMEAQEGVAIEIAEAVVGALKGELAATAVNAPMVPAEVLTELK-PFVELAEKL 392 (600)
Q Consensus 330 nvilTPH~~~~t~ea~~~~~~~~~~~l~~~l~g~~~~~~vn~~~i~~~~~~~~~-p~~~la~~l 392 (600)
|+-+|+. + .+ +++.+.++++...-..++- ...+--+.+.+. ||+..|.+|
T Consensus 455 -vv~g~~T--~-~~--------~~~~~~~~~~~~gk~pv~v-~d~pGfi~nRl~~~~~~Ea~~l 505 (699)
T TIGR02440 455 -VIPHAGT--S-EQ--------TIATTVALAKKQGKTPIVV-ADKAGFYVNRILAPYMNEAARL 505 (699)
T ss_pred -EeCCCCC--C-HH--------HHHHHHHHHHHcCCeEEEE-ccccchHHHHHHHHHHHHHHHH
Confidence 4444442 2 22 3344444444333222222 233444555543 777777666
|
Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog. |
| >PRK06737 acetolactate synthase 1 regulatory subunit; Validated | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00049 Score=57.32 Aligned_cols=71 Identities=7% Similarity=0.090 Sum_probs=56.1
Q ss_pred cEEEEEecCCCCChhhHHhhhhcCCccccceEeeeecCCCcEEEEEEe--CCCCcHHHHHHHhcCCCcceEEE
Q 007512 527 SIILCRQVDQPGMIGTVGSILGSENVNVSFMSVGRVAPRKHAVMAIGV--DEQPRKETLKKIGDVPAIEEFVF 597 (600)
Q Consensus 527 ~~Liv~~~D~pG~Ia~V~~iL~~~~INIa~m~v~R~~~g~~al~~i~~--D~~~~~~~l~~l~~~~~v~~v~~ 597 (600)
|++-+...|+||++.+|++++...|+||.+|.++..+..+..-|.|.+ |+..-+.+.++|.++.+|.++.-
T Consensus 3 ~tisi~v~n~pGVL~Ri~~lf~rRgfNI~Sl~vg~te~~~~sriti~~~~~~~~i~qi~kQL~KLidV~~V~~ 75 (76)
T PRK06737 3 HTFSLVIHNDPSVLLRISGIFARRGYYISSLNLNERDTSGVSEMKLTAVCTENEATLLVSQLKKLINVLQVNK 75 (76)
T ss_pred EEEEEEEecCCCHHHHHHHHHhccCcceEEEEecccCCCCeeEEEEEEECCHHHHHHHHHHHhCCcCEEEEEe
Confidence 678888899999999999999999999999999977666665554443 33344478888888888887753
|
|
| >cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00039 Score=55.96 Aligned_cols=57 Identities=14% Similarity=0.324 Sum_probs=46.0
Q ss_pred EEEEEecCCCCChhhHHhhhhcCCccccceEeeeecCCCcEEEEEEeCCCCcHHHHHHHhc
Q 007512 528 IILCRQVDQPGMIGTVGSILGSENVNVSFMSVGRVAPRKHAVMAIGVDEQPRKETLKKIGD 588 (600)
Q Consensus 528 ~Liv~~~D~pG~Ia~V~~iL~~~~INIa~m~v~R~~~g~~al~~i~~D~~~~~~~l~~l~~ 588 (600)
-+.+..+|+||.+++|+++|+++|+||.+|......+ .+++++.+|+ ++.+.+.|++
T Consensus 3 ri~v~v~d~pG~La~v~~~l~~~~inI~~i~~~~~~~--~~~~rl~~~~--~~~~~~~L~~ 59 (66)
T cd04908 3 QLSVFLENKPGRLAAVTEILSEAGINIRALSIADTSE--FGILRLIVSD--PDKAKEALKE 59 (66)
T ss_pred EEEEEEcCCCChHHHHHHHHHHCCCCEEEEEEEecCC--CCEEEEEECC--HHHHHHHHHH
Confidence 3567889999999999999999999999999876433 5888888865 3566666665
|
Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains. |
| >cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0012 Score=64.59 Aligned_cols=98 Identities=22% Similarity=0.122 Sum_probs=66.6
Q ss_pred ceeccCCEEEEEec-ChhHHHHHHHhhcCCCEEEEECCCCCh-hH-HHHc----CCc-----cc---CHHHHhccCCEEE
Q 007512 192 GVSLVGKTLAVLGF-GKVGSEVARRAKGLGMHVIAHDPYAPA-DR-ARAI----GVD-----LV---SFDEAIATADFIS 256 (600)
Q Consensus 192 g~~l~gktiGIIGl-G~IG~~vA~~l~~~g~~V~~~d~~~~~-~~-a~~~----g~~-----~~---~l~ell~~aDvV~ 256 (600)
|..+.++++.|+|. |.+|+.+++.+...|.+|..++++... +. .... +.. .. ++.+.++++|+|+
T Consensus 23 ~~~l~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~diVi 102 (194)
T cd01078 23 GKDLKGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERAQKAADSLRARFGEGVGAVETSDDAARAAAIKGADVVF 102 (194)
T ss_pred CcCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhhcCCcEEEeeCCCHHHHHHHHhcCCEEE
Confidence 55678999999995 999999999999889999999876521 11 1111 221 11 2347788999999
Q ss_pred EecCCCccccccccHhHhccCCCceEEEEccCCcccc
Q 007512 257 LHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVID 293 (600)
Q Consensus 257 l~~Pl~~~t~~li~~~~l~~mk~gailvNvarg~ivd 293 (600)
.++|....+ .+.. -...+++.+++|+.+...++
T Consensus 103 ~at~~g~~~--~~~~--~~~~~~~~vv~D~~~~~~~~ 135 (194)
T cd01078 103 AAGAAGVEL--LEKL--AWAPKPLAVAADVNAVPPVG 135 (194)
T ss_pred ECCCCCcee--chhh--hcccCceeEEEEccCCCCCC
Confidence 999865431 1111 11245688999988776553
|
Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo |
| >cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.00052 Score=55.70 Aligned_cols=62 Identities=16% Similarity=0.290 Sum_probs=53.1
Q ss_pred EEEEEecCCCCChhhHHhhhhcCCccccceEeeeecCCCcEEEEEEeCCCCcHHHHHHHhcC
Q 007512 528 IILCRQVDQPGMIGTVGSILGSENVNVSFMSVGRVAPRKHAVMAIGVDEQPRKETLKKIGDV 589 (600)
Q Consensus 528 ~Liv~~~D~pG~Ia~V~~iL~~~~INIa~m~v~R~~~g~~al~~i~~D~~~~~~~l~~l~~~ 589 (600)
.+-+..+|+||.++.+...|+++++||.++...+..+++.+.+.+.++...++++.+.|++.
T Consensus 3 ~~~v~~~d~pG~l~~i~~~l~~~~inI~~i~~~~~~~~~~~~v~i~v~~~~~~~~~~~L~~~ 64 (72)
T cd04883 3 QIEVRVPDRPGQLADIAAIFKDRGVNIVSVLVYPSKEEDNKILVFRVQTMNPRPIIEDLRRA 64 (72)
T ss_pred EEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEeccCCCCeEEEEEEEecCCHHHHHHHHHHC
Confidence 35567899999999999999999999999988876667788899999876666888888764
|
This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains. |
| >PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0021 Score=75.19 Aligned_cols=172 Identities=19% Similarity=0.176 Sum_probs=104.4
Q ss_pred CEEEEEecChhHHHHHHHhh-cCCCEEEEECCCCC-hhHH-----------HHcC-------------Ccc-cCHHHHhc
Q 007512 198 KTLAVLGFGKVGSEVARRAK-GLGMHVIAHDPYAP-ADRA-----------RAIG-------------VDL-VSFDEAIA 250 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~-~~g~~V~~~d~~~~-~~~a-----------~~~g-------------~~~-~~l~ell~ 250 (600)
++|+|||.|.||..+|..+. ..|++|..||++.. .+.+ .+.| +.. .++ +.++
T Consensus 310 ~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~ 388 (708)
T PRK11154 310 NKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGTTDY-RGFK 388 (708)
T ss_pred cEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEeCCh-HHhc
Confidence 68999999999999999988 77999999998752 1111 1111 111 234 4679
Q ss_pred cCCEEEEecCCCccccccccHhHhccCCCceEEEEccCCccccHHHHHHhHhc-CCceEEEEeccCCCCCCCCCccccCC
Q 007512 251 TADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVIDEEALVRALDS-GRVAQAALDVFTEEPPPADSKLVQHE 329 (600)
Q Consensus 251 ~aDvV~l~~Pl~~~t~~li~~~~l~~mk~gailvNvarg~ivde~aL~~aL~~-g~i~ga~lDv~~~EP~~~~~~L~~~~ 329 (600)
+||+|+=++|-..+.+.-+-++.=+.++|+++|....++= ....|.+.+.. .++ .+++-|. |+ ..-||.|
T Consensus 389 ~aDlViEav~E~~~~K~~v~~~le~~~~~~~ilasnTS~l--~i~~la~~~~~p~r~--ig~Hff~--P~-~~~~lVE-- 459 (708)
T PRK11154 389 HADVVIEAVFEDLALKQQMVAEVEQNCAPHTIFASNTSSL--PIGQIAAAAARPEQV--IGLHYFS--PV-EKMPLVE-- 459 (708)
T ss_pred cCCEEeecccccHHHHHHHHHHHHhhCCCCcEEEECCCCC--CHHHHHHhcCcccce--EEEecCC--cc-ccCceEE--
Confidence 9999999999888777666566556689999987665543 34455555433 445 6666664 32 2346664
Q ss_pred cEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCccccCCCCChhhhhccc-chHHHHHHH
Q 007512 330 RVTVTPHLGASTMEAQEGVAIEIAEAVVGALKGELAATAVNAPMVPAEVLTELK-PFVELAEKL 392 (600)
Q Consensus 330 nvilTPH~~~~t~ea~~~~~~~~~~~l~~~l~g~~~~~~vn~~~i~~~~~~~~~-p~~~la~~l 392 (600)
+.||-..+ . ++++.+.++++......++- ...+--+.+.+. ||+..|.+|
T Consensus 460 ---vv~g~~Ts-~--------~~~~~~~~~~~~~gk~pv~v-~d~pGfi~nRl~~~~~~EA~~l 510 (708)
T PRK11154 460 ---VIPHAKTS-A--------ETIATTVALAKKQGKTPIVV-RDGAGFYVNRILAPYINEAARL 510 (708)
T ss_pred ---EECCCCCC-H--------HHHHHHHHHHHHcCCceEEE-eccCcHHHHHHHHHHHHHHHHH
Confidence 44543222 2 23344444443332222222 223344555544 777777666
|
|
| >TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0016 Score=76.38 Aligned_cols=172 Identities=16% Similarity=0.176 Sum_probs=104.1
Q ss_pred CEEEEEecChhHHHHHHHhhcCCCEEEEECCCCCh-hHH-----------HHcC-------------Ccc-cCHHHHhcc
Q 007512 198 KTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPA-DRA-----------RAIG-------------VDL-VSFDEAIAT 251 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~~-~~a-----------~~~g-------------~~~-~~l~ell~~ 251 (600)
++|+|||.|.||+.||..+...|++|+.||+.... +.+ .+.| +.. .+++ .+++
T Consensus 336 ~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~ 414 (737)
T TIGR02441 336 KTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPTLDYS-GFKN 414 (737)
T ss_pred cEEEEECCCHhHHHHHHHHHhCCCcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHH-Hhcc
Confidence 57999999999999999999889999999987521 211 1111 111 2453 5799
Q ss_pred CCEEEEecCCCccccccccHhHhccCCCceEEEEccCCccccHHHHHHhHhc-CCceEEEEeccCCCCCCCCCccccCCc
Q 007512 252 ADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVIDEEALVRALDS-GRVAQAALDVFTEEPPPADSKLVQHER 330 (600)
Q Consensus 252 aDvV~l~~Pl~~~t~~li~~~~l~~mk~gailvNvarg~ivde~aL~~aL~~-g~i~ga~lDv~~~EP~~~~~~L~~~~n 330 (600)
||+|+=++|-..+.+.-+-.+.=..++++++|....++ ++...+...+.. .++ .|++-|.+- ..-||.|
T Consensus 415 aDlViEAv~E~l~~K~~vf~~l~~~~~~~~ilasNTSs--l~i~~la~~~~~p~r~--ig~Hff~P~---~~m~LvE--- 484 (737)
T TIGR02441 415 ADMVIEAVFEDLSLKHKVIKEVEAVVPPHCIIASNTSA--LPIKDIAAVSSRPEKV--IGMHYFSPV---DKMQLLE--- 484 (737)
T ss_pred CCeehhhccccHHHHHHHHHHHHhhCCCCcEEEEcCCC--CCHHHHHhhcCCccce--EEEeccCCc---ccCceEE---
Confidence 99999999988877776666666678999887643332 345555555543 345 677766432 2346664
Q ss_pred EEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCccccCCCCChhhhhcc-cchHHHHHHH
Q 007512 331 VTVTPHLGASTMEAQEGVAIEIAEAVVGALKGELAATAVNAPMVPAEVLTEL-KPFVELAEKL 392 (600)
Q Consensus 331 vilTPH~~~~t~ea~~~~~~~~~~~l~~~l~g~~~~~~vn~~~i~~~~~~~~-~p~~~la~~l 392 (600)
|+-+|+. +.++ ++.+.++.+...-..++- ...+--+.+.+ .||+..|.+|
T Consensus 485 vv~g~~T---s~~~--------~~~~~~~~~~lgk~pv~v-~d~pGFi~NRi~~~~~~ea~~l 535 (737)
T TIGR02441 485 IITHDGT---SKDT--------LASAVAVGLKQGKVVIVV-KDGPGFYTTRCLGPMLAEVIRL 535 (737)
T ss_pred EeCCCCC---CHHH--------HHHHHHHHHHCCCeEEEE-CCcCCchHHHHHHHHHHHHHHH
Confidence 4445543 2222 233333333222222221 23334455554 4888887776
|
Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16). |
| >cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0005 Score=54.43 Aligned_cols=59 Identities=15% Similarity=0.293 Sum_probs=48.8
Q ss_pred EEEEecCCCCChhhHHhhhhcCCccccceEeeeecCCCcEEEEEEeCCCCcHHHHHHHhcC
Q 007512 529 ILCRQVDQPGMIGTVGSILGSENVNVSFMSVGRVAPRKHAVMAIGVDEQPRKETLKKIGDV 589 (600)
Q Consensus 529 Liv~~~D~pG~Ia~V~~iL~~~~INIa~m~v~R~~~g~~al~~i~~D~~~~~~~l~~l~~~ 589 (600)
+-+..+|+||.++++.++|+++|+||.++........+.+...+.++. .+.+++.|++.
T Consensus 2 i~v~~~d~pG~L~~i~~~l~~~~~nI~~i~~~~~~~~~~~~v~~~ve~--~~~~~~~L~~~ 60 (65)
T cd04882 2 LAVEVPDKPGGLHEILQILSEEGINIEYMYAFVEKKGGKALLIFRTED--IEKAIEVLQER 60 (65)
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCChhheEEEccCCCCeEEEEEEeCC--HHHHHHHHHHC
Confidence 346789999999999999999999999998876554567888899887 66788877763
|
Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains. |
| >PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.00085 Score=69.62 Aligned_cols=82 Identities=20% Similarity=0.288 Sum_probs=68.1
Q ss_pred cceeccCCEEEEEecC-hhHHHHHHHhhcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEecCCCccccccc
Q 007512 191 VGVSLVGKTLAVLGFG-KVGSEVARRAKGLGMHVIAHDPYAPADRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVL 269 (600)
Q Consensus 191 ~g~~l~gktiGIIGlG-~IG~~vA~~l~~~g~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Pl~~~t~~li 269 (600)
.+.++.||++.|||-+ .+|+.+|..|...|..|..++.+. .++.+.+++||+|+.+++. .+++
T Consensus 152 ~~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~atVt~chs~t------------~~l~~~~~~ADIvI~AvG~----p~~i 215 (284)
T PRK14190 152 YNIDISGKHVVVVGRSNIVGKPVGQLLLNENATVTYCHSKT------------KNLAELTKQADILIVAVGK----PKLI 215 (284)
T ss_pred cCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEEeCCc------------hhHHHHHHhCCEEEEecCC----CCcC
Confidence 4679999999999987 579999999998899999886532 2578899999999999972 3478
Q ss_pred cHhHhccCCCceEEEEccCCcc
Q 007512 270 NDETFGKMKKGVRIINVARGGV 291 (600)
Q Consensus 270 ~~~~l~~mk~gailvNvarg~i 291 (600)
+.+++ |+|+++||+|.-.+
T Consensus 216 ~~~~i---k~gavVIDvGi~~~ 234 (284)
T PRK14190 216 TADMV---KEGAVVIDVGVNRL 234 (284)
T ss_pred CHHHc---CCCCEEEEeecccc
Confidence 87766 89999999986553
|
|
| >PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0007 Score=70.16 Aligned_cols=81 Identities=22% Similarity=0.315 Sum_probs=67.1
Q ss_pred cceeccCCEEEEEecCh-hHHHHHHHhhcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEecCCCccccccc
Q 007512 191 VGVSLVGKTLAVLGFGK-VGSEVARRAKGLGMHVIAHDPYAPADRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVL 269 (600)
Q Consensus 191 ~g~~l~gktiGIIGlG~-IG~~vA~~l~~~g~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Pl~~~t~~li 269 (600)
.+.++.||++.|||-+. +|+.+|..|...|+.|..+.... .++.+.+++||+|+.+++. .+++
T Consensus 151 ~~i~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVtichs~T------------~~l~~~~~~ADIvI~AvG~----~~~i 214 (284)
T PRK14170 151 TGTQIEGKRAVVIGRSNIVGKPVAQLLLNENATVTIAHSRT------------KDLPQVAKEADILVVATGL----AKFV 214 (284)
T ss_pred hCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC------------CCHHHHHhhCCEEEEecCC----cCcc
Confidence 47799999999999885 69999999998899999887543 2478889999999999983 3467
Q ss_pred cHhHhccCCCceEEEEccCCc
Q 007512 270 NDETFGKMKKGVRIINVARGG 290 (600)
Q Consensus 270 ~~~~l~~mk~gailvNvarg~ 290 (600)
..+.+ |+|+++||+|--.
T Consensus 215 ~~~~v---k~GavVIDvGin~ 232 (284)
T PRK14170 215 KKDYI---KPGAIVIDVGMDR 232 (284)
T ss_pred CHHHc---CCCCEEEEccCcc
Confidence 76655 8999999998544
|
|
| >TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.00082 Score=71.41 Aligned_cols=88 Identities=15% Similarity=0.183 Sum_probs=64.7
Q ss_pred CCEEEEEecChhHHHHHHHhhc-C-CCEEEEECCCCCh-hH----HHHcCCc---ccCHHHHhccCCEEEEecCCCcccc
Q 007512 197 GKTLAVLGFGKVGSEVARRAKG-L-GMHVIAHDPYAPA-DR----ARAIGVD---LVSFDEAIATADFISLHMPLTPATS 266 (600)
Q Consensus 197 gktiGIIGlG~IG~~vA~~l~~-~-g~~V~~~d~~~~~-~~----a~~~g~~---~~~l~ell~~aDvV~l~~Pl~~~t~ 266 (600)
-+++||||.|.+|+..++.+.. + .-+|.+||++... +. ..+.|+. ..+.++++++||+|++|+|.. .
T Consensus 128 ~~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r~~~~~~~~~~~~~~~g~~v~~~~~~~eav~~aDiVitaT~s~---~ 204 (325)
T TIGR02371 128 SSVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCRTPSTREKFALRASDYEVPVRAATDPREAVEGCDILVTTTPSR---K 204 (325)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhhCCcEEEeCCHHHHhccCCEEEEecCCC---C
Confidence 4789999999999998877763 3 4689999998732 21 1234532 347999999999999999853 3
Q ss_pred ccccHhHhccCCCceEEEEccCCc
Q 007512 267 KVLNDETFGKMKKGVRIINVARGG 290 (600)
Q Consensus 267 ~li~~~~l~~mk~gailvNvarg~ 290 (600)
-++..+ .+|||+.+..+|...
T Consensus 205 P~~~~~---~l~~g~~v~~vGs~~ 225 (325)
T TIGR02371 205 PVVKAD---WVSEGTHINAIGADA 225 (325)
T ss_pred cEecHH---HcCCCCEEEecCCCC
Confidence 455544 359999999998543
|
This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity. |
| >PRK00258 aroE shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.00075 Score=70.08 Aligned_cols=96 Identities=20% Similarity=0.275 Sum_probs=63.3
Q ss_pred eeccCCEEEEEecChhHHHHHHHhhcCC-CEEEEECCCCCh-h-HHHHcC----Ccc-cCHHHHhccCCEEEEecCCCcc
Q 007512 193 VSLVGKTLAVLGFGKVGSEVARRAKGLG-MHVIAHDPYAPA-D-RARAIG----VDL-VSFDEAIATADFISLHMPLTPA 264 (600)
Q Consensus 193 ~~l~gktiGIIGlG~IG~~vA~~l~~~g-~~V~~~d~~~~~-~-~a~~~g----~~~-~~l~ell~~aDvV~l~~Pl~~~ 264 (600)
..+.++++.|+|.|.+|+.++..|...| .+|.+++++... + .+...+ +.. .++.+.+.++|+|+.++|..-.
T Consensus 119 ~~~~~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~DivInaTp~g~~ 198 (278)
T PRK00258 119 VDLKGKRILILGAGGAARAVILPLLDLGVAEITIVNRTVERAEELAKLFGALGKAELDLELQEELADFDLIINATSAGMS 198 (278)
T ss_pred CCCCCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhccceeecccchhccccCCEEEECCcCCCC
Confidence 4678999999999999999999999999 699999987532 1 222222 111 2345677899999999996532
Q ss_pred ccccccHhHhccCCCceEEEEccC
Q 007512 265 TSKVLNDETFGKMKKGVRIINVAR 288 (600)
Q Consensus 265 t~~li~~~~l~~mk~gailvNvar 288 (600)
...-...-.+..++++.+++|+.-
T Consensus 199 ~~~~~~~~~~~~l~~~~~v~DivY 222 (278)
T PRK00258 199 GELPLPPLPLSLLRPGTIVYDMIY 222 (278)
T ss_pred CCCCCCCCCHHHcCCCCEEEEeec
Confidence 110011112234566667777654
|
|
| >PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.00072 Score=70.54 Aligned_cols=82 Identities=17% Similarity=0.220 Sum_probs=67.4
Q ss_pred cceeccCCEEEEEecCh-hHHHHHHHhhcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEecCCCccccccc
Q 007512 191 VGVSLVGKTLAVLGFGK-VGSEVARRAKGLGMHVIAHDPYAPADRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVL 269 (600)
Q Consensus 191 ~g~~l~gktiGIIGlG~-IG~~vA~~l~~~g~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Pl~~~t~~li 269 (600)
.+.++.||++.|||-+. +|+.+|..|...|+.|..+.... -++.+.+++||+|+.+++. .+++
T Consensus 152 ~~i~l~Gk~vvVIGrS~iVGkPla~lL~~~~atVtv~hs~T------------~~l~~~~~~ADIvIsAvGk----p~~i 215 (297)
T PRK14186 152 QQIDIAGKKAVVVGRSILVGKPLALMLLAANATVTIAHSRT------------QDLASITREADILVAAAGR----PNLI 215 (297)
T ss_pred hCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCCC------------CCHHHHHhhCCEEEEccCC----cCcc
Confidence 46799999999999875 69999999999999999886542 1578889999999999983 3567
Q ss_pred cHhHhccCCCceEEEEccCCcc
Q 007512 270 NDETFGKMKKGVRIINVARGGV 291 (600)
Q Consensus 270 ~~~~l~~mk~gailvNvarg~i 291 (600)
..+++ |+|+++||+|--.+
T Consensus 216 ~~~~i---k~gavVIDvGin~~ 234 (297)
T PRK14186 216 GAEMV---KPGAVVVDVGIHRL 234 (297)
T ss_pred CHHHc---CCCCEEEEeccccc
Confidence 76655 89999999985543
|
|
| >PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ] | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0007 Score=59.99 Aligned_cols=78 Identities=24% Similarity=0.293 Sum_probs=57.2
Q ss_pred hHHHHHHHhhcCCCEEEEECCCCChhHHHH----cCCccc-CHHHHhccCCEEEEecCCCccccccccHhHhccCCCceE
Q 007512 208 VGSEVARRAKGLGMHVIAHDPYAPADRARA----IGVDLV-SFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVR 282 (600)
Q Consensus 208 IG~~vA~~l~~~g~~V~~~d~~~~~~~a~~----~g~~~~-~l~ell~~aDvV~l~~Pl~~~t~~li~~~~l~~mk~gai 282 (600)
-+..+++.|++.|++|.+|||+.+...... .+++.. ++++.++.+|+|+++++ .++-+.+--......|+++.+
T Consensus 18 p~~~l~~~L~~~g~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vvl~t~-h~~f~~l~~~~~~~~~~~~~~ 96 (106)
T PF03720_consen 18 PALELIEELKERGAEVSVYDPYVDEEEIKELGKLEGVEVCDDLEEALKGADAVVLATD-HDEFRELDWEEIAKLMRKPPV 96 (106)
T ss_dssp HHHHHHHHHHHTT-EEEEE-TTSHHHHHHHHCHHHCEEEESSHHHHHTTESEEEESS---GGGGCCGHHHHHHHSCSSEE
T ss_pred HHHHHHHHHHHCCCEEEEECCccChHHHHhhCCccceEEecCHHHHhcCCCEEEEEec-CHHHhccCHHHHHHhcCCCCE
Confidence 356789999999999999999996665555 456654 79999999999999998 444444333445566889999
Q ss_pred EEEc
Q 007512 283 IINV 286 (600)
Q Consensus 283 lvNv 286 (600)
|+|+
T Consensus 97 iiD~ 100 (106)
T PF03720_consen 97 IIDG 100 (106)
T ss_dssp EEES
T ss_pred EEEC
Confidence 9997
|
The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B .... |
| >PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.00078 Score=69.79 Aligned_cols=81 Identities=16% Similarity=0.295 Sum_probs=66.7
Q ss_pred cceeccCCEEEEEecCh-hHHHHHHHhhcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEecCCCccccccc
Q 007512 191 VGVSLVGKTLAVLGFGK-VGSEVARRAKGLGMHVIAHDPYAPADRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVL 269 (600)
Q Consensus 191 ~g~~l~gktiGIIGlG~-IG~~vA~~l~~~g~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Pl~~~t~~li 269 (600)
.+.++.||++.|||-+. +|+.+|..|...|+.|..+..+. -++.+..++||+|+.+++. .+++
T Consensus 150 ~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~atVtichs~T------------~~l~~~~~~ADIvI~AvG~----p~~i 213 (282)
T PRK14169 150 YDIDVAGKRVVIVGRSNIVGRPLAGLMVNHDATVTIAHSKT------------RNLKQLTKEADILVVAVGV----PHFI 213 (282)
T ss_pred hCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEECCCC------------CCHHHHHhhCCEEEEccCC----cCcc
Confidence 46799999999999875 69999999998899999886543 1478889999999999983 3567
Q ss_pred cHhHhccCCCceEEEEccCCc
Q 007512 270 NDETFGKMKKGVRIINVARGG 290 (600)
Q Consensus 270 ~~~~l~~mk~gailvNvarg~ 290 (600)
+.++ +|+|+++||+|--.
T Consensus 214 ~~~~---vk~GavVIDvGin~ 231 (282)
T PRK14169 214 GADA---VKPGAVVIDVGISR 231 (282)
T ss_pred CHHH---cCCCcEEEEeeccc
Confidence 7665 48999999998533
|
|
| >PRK14982 acyl-ACP reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0019 Score=68.77 Aligned_cols=98 Identities=24% Similarity=0.376 Sum_probs=71.2
Q ss_pred cceeccCCEEEEEec-ChhHHHHHHHhh-cCC-CEEEEECCCCC-hh-HHHHcC-CcccCHHHHhccCCEEEEecCCCcc
Q 007512 191 VGVSLVGKTLAVLGF-GKVGSEVARRAK-GLG-MHVIAHDPYAP-AD-RARAIG-VDLVSFDEAIATADFISLHMPLTPA 264 (600)
Q Consensus 191 ~g~~l~gktiGIIGl-G~IG~~vA~~l~-~~g-~~V~~~d~~~~-~~-~a~~~g-~~~~~l~ell~~aDvV~l~~Pl~~~ 264 (600)
.+..+.||++.|+|. |.||+.+++.|. ..| .+++.+++... .. .+.+.+ ....++++.++++|+|+.++-..
T Consensus 149 lg~~l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~La~el~~~~i~~l~~~l~~aDiVv~~ts~~-- 226 (340)
T PRK14982 149 LGIDLSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQELQAELGGGKILSLEEALPEADIVVWVASMP-- 226 (340)
T ss_pred hccCcCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHHHHHHhccccHHhHHHHHccCCEEEECCcCC--
Confidence 456789999999998 899999999997 456 48888887642 11 222332 23457889999999998776532
Q ss_pred ccc-cccHhHhccCCCceEEEEccCCccccH
Q 007512 265 TSK-VLNDETFGKMKKGVRIINVARGGVIDE 294 (600)
Q Consensus 265 t~~-li~~~~l~~mk~gailvNvarg~ivde 294 (600)
.. .++.+. ++++++++|.|+-.=||.
T Consensus 227 -~~~~I~~~~---l~~~~~viDiAvPRDVd~ 253 (340)
T PRK14982 227 -KGVEIDPET---LKKPCLMIDGGYPKNLDT 253 (340)
T ss_pred -cCCcCCHHH---hCCCeEEEEecCCCCCCc
Confidence 23 366654 489999999998765553
|
|
| >PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+) | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.00081 Score=70.17 Aligned_cols=81 Identities=19% Similarity=0.253 Sum_probs=67.3
Q ss_pred cceeccCCEEEEEecCh-hHHHHHHHhhcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEecCCCccccccc
Q 007512 191 VGVSLVGKTLAVLGFGK-VGSEVARRAKGLGMHVIAHDPYAPADRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVL 269 (600)
Q Consensus 191 ~g~~l~gktiGIIGlG~-IG~~vA~~l~~~g~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Pl~~~t~~li 269 (600)
.+.++.||++.|||-+. +|+.+|..|...|+.|..++.+. -++++.+++||+|+.++.. .+++
T Consensus 161 ~~i~l~Gk~vvVIGRS~iVGkPla~lL~~~~ATVtvchs~T------------~nl~~~~~~ADIvv~AvGk----~~~i 224 (299)
T PLN02516 161 SGIPIKGKKAVVVGRSNIVGLPVSLLLLKADATVTVVHSRT------------PDPESIVREADIVIAAAGQ----AMMI 224 (299)
T ss_pred hCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCCC------------CCHHHHHhhCCEEEEcCCC----cCcc
Confidence 46799999999999885 69999999998899999987542 1478899999999999973 3677
Q ss_pred cHhHhccCCCceEEEEccCCc
Q 007512 270 NDETFGKMKKGVRIINVARGG 290 (600)
Q Consensus 270 ~~~~l~~mk~gailvNvarg~ 290 (600)
..+++ |+|+++||+|--.
T Consensus 225 ~~~~v---k~gavVIDvGin~ 242 (299)
T PLN02516 225 KGDWI---KPGAAVIDVGTNA 242 (299)
T ss_pred CHHHc---CCCCEEEEeeccc
Confidence 77655 8999999998543
|
|
| >PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.00085 Score=69.53 Aligned_cols=79 Identities=15% Similarity=0.252 Sum_probs=66.1
Q ss_pred cceeccCCEEEEEecC-hhHHHHHHHhhcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEecCCCccccccc
Q 007512 191 VGVSLVGKTLAVLGFG-KVGSEVARRAKGLGMHVIAHDPYAPADRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVL 269 (600)
Q Consensus 191 ~g~~l~gktiGIIGlG-~IG~~vA~~l~~~g~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Pl~~~t~~li 269 (600)
.+.++.||++.|||-+ .+|+.+|..|...|+.|..++.+. -++.+..++||+|+.+++. .+++
T Consensus 153 y~i~l~Gk~vvViGrS~iVGkPla~lL~~~~atVt~chs~T------------~~l~~~~~~ADIvIsAvGk----~~~i 216 (284)
T PRK14177 153 YGIDVTGKNAVVVGRSPILGKPMAMLLTEMNATVTLCHSKT------------QNLPSIVRQADIIVGAVGK----PEFI 216 (284)
T ss_pred hCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC------------CCHHHHHhhCCEEEEeCCC----cCcc
Confidence 4679999999999987 469999999999999999988543 1478889999999999982 3567
Q ss_pred cHhHhccCCCceEEEEccC
Q 007512 270 NDETFGKMKKGVRIINVAR 288 (600)
Q Consensus 270 ~~~~l~~mk~gailvNvar 288 (600)
..+++ |+|+++||+|-
T Consensus 217 ~~~~i---k~gavVIDvGi 232 (284)
T PRK14177 217 KADWI---SEGAVLLDAGY 232 (284)
T ss_pred CHHHc---CCCCEEEEecC
Confidence 76654 89999999984
|
|
| >PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.00079 Score=69.75 Aligned_cols=79 Identities=22% Similarity=0.287 Sum_probs=66.3
Q ss_pred cceeccCCEEEEEecCh-hHHHHHHHhhcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEecCCCccccccc
Q 007512 191 VGVSLVGKTLAVLGFGK-VGSEVARRAKGLGMHVIAHDPYAPADRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVL 269 (600)
Q Consensus 191 ~g~~l~gktiGIIGlG~-IG~~vA~~l~~~g~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Pl~~~t~~li 269 (600)
.+.++.||++.|||-+. +|+.+|..|...|+.|..+..+. .++.+..++||+|+.++.. .+++
T Consensus 151 y~i~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVt~chs~T------------~nl~~~~~~ADIvIsAvGk----p~~i 214 (282)
T PRK14166 151 YEIDLEGKDAVIIGASNIVGRPMATMLLNAGATVSVCHIKT------------KDLSLYTRQADLIIVAAGC----VNLL 214 (282)
T ss_pred hCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC------------CCHHHHHhhCCEEEEcCCC----cCcc
Confidence 46789999999999875 69999999998899999887653 2478899999999999982 3567
Q ss_pred cHhHhccCCCceEEEEccC
Q 007512 270 NDETFGKMKKGVRIINVAR 288 (600)
Q Consensus 270 ~~~~l~~mk~gailvNvar 288 (600)
+.+++ |+|+++||+|-
T Consensus 215 ~~~~v---k~GavVIDvGi 230 (282)
T PRK14166 215 RSDMV---KEGVIVVDVGI 230 (282)
T ss_pred CHHHc---CCCCEEEEecc
Confidence 77654 89999999984
|
|
| >cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0011 Score=54.38 Aligned_cols=70 Identities=16% Similarity=0.259 Sum_probs=54.5
Q ss_pred EEEEEecCCCCChhhHHhhhhcCCccccceEeeeecCCCcEEEEEEeCCCC-c---HHHHHHHhcCCCcceEEEe
Q 007512 528 IILCRQVDQPGMIGTVGSILGSENVNVSFMSVGRVAPRKHAVMAIGVDEQP-R---KETLKKIGDVPAIEEFVFL 598 (600)
Q Consensus 528 ~Liv~~~D~pG~Ia~V~~iL~~~~INIa~m~v~R~~~g~~al~~i~~D~~~-~---~~~l~~l~~~~~v~~v~~i 598 (600)
.|.+...|+||.++.|.+.|+++++||..++..+ ..++.+-+.+.++..- . .+++++|+++|+|.+|+.+
T Consensus 2 ~l~i~~~d~~g~l~~I~~~la~~~inI~~i~~~~-~~~~~~~i~~~v~v~~~~~~l~~l~~~L~~i~~V~~v~~~ 75 (76)
T cd04888 2 TLSLLLEHRPGVLSKVLNTIAQVRGNVLTINQNI-PIHGRANVTISIDTSTMNGDIDELLEELREIDGVEKVELV 75 (76)
T ss_pred EEEEEecCCCchHHHHHHHHHHcCCCEEEEEeCC-CCCCeEEEEEEEEcCchHHHHHHHHHHHhcCCCeEEEEEe
Confidence 3667789999999999999999999999998753 2344555555554222 2 4789999999999999875
|
a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains. |
| >PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.00099 Score=68.89 Aligned_cols=79 Identities=23% Similarity=0.358 Sum_probs=66.0
Q ss_pred cceeccCCEEEEEecC-hhHHHHHHHhhcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEecCCCccccccc
Q 007512 191 VGVSLVGKTLAVLGFG-KVGSEVARRAKGLGMHVIAHDPYAPADRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVL 269 (600)
Q Consensus 191 ~g~~l~gktiGIIGlG-~IG~~vA~~l~~~g~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Pl~~~t~~li 269 (600)
.+.++.||++.|||-+ .+|+.+|..|...|+.|..++.+. -++.+..++||+|+.+++. .+++
T Consensus 152 ~~i~l~Gk~vvViGrS~~VGkPla~lL~~~~AtVt~chs~T------------~~l~~~~~~ADIvIsAvGk----p~~i 215 (278)
T PRK14172 152 LNIDIEGKEVVVIGRSNIVGKPVAQLLLNENATVTICHSKT------------KNLKEVCKKADILVVAIGR----PKFI 215 (278)
T ss_pred hCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCCC------------CCHHHHHhhCCEEEEcCCC----cCcc
Confidence 4679999999999987 479999999998899999987542 1578889999999999983 3467
Q ss_pred cHhHhccCCCceEEEEccC
Q 007512 270 NDETFGKMKKGVRIINVAR 288 (600)
Q Consensus 270 ~~~~l~~mk~gailvNvar 288 (600)
..++ .|+|+++||+|-
T Consensus 216 ~~~~---ik~gavVIDvGi 231 (278)
T PRK14172 216 DEEY---VKEGAIVIDVGT 231 (278)
T ss_pred CHHH---cCCCcEEEEeec
Confidence 7665 489999999974
|
|
| >PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.001 Score=69.32 Aligned_cols=81 Identities=20% Similarity=0.259 Sum_probs=67.1
Q ss_pred cceeccCCEEEEEecCh-hHHHHHHHhhcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEecCCCccccccc
Q 007512 191 VGVSLVGKTLAVLGFGK-VGSEVARRAKGLGMHVIAHDPYAPADRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVL 269 (600)
Q Consensus 191 ~g~~l~gktiGIIGlG~-IG~~vA~~l~~~g~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Pl~~~t~~li 269 (600)
.+.++.||++.|||-+. +|+.+|..|...|+.|..++.+. -++.+.+++||+|+.+++. .+++
T Consensus 154 ~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVt~chs~T------------~~l~~~~~~ADIvVsAvGk----p~~i 217 (294)
T PRK14187 154 ITRNLSGSDAVVIGRSNIVGKPMACLLLGENCTVTTVHSAT------------RDLADYCSKADILVAAVGI----PNFV 217 (294)
T ss_pred hCCCCCCCEEEEECCCccchHHHHHHHhhCCCEEEEeCCCC------------CCHHHHHhhCCEEEEccCC----cCcc
Confidence 46789999999999875 69999999999999999987643 2478889999999999983 3467
Q ss_pred cHhHhccCCCceEEEEccCCc
Q 007512 270 NDETFGKMKKGVRIINVARGG 290 (600)
Q Consensus 270 ~~~~l~~mk~gailvNvarg~ 290 (600)
..+++ |+|+++||+|-..
T Consensus 218 ~~~~i---k~gaiVIDVGin~ 235 (294)
T PRK14187 218 KYSWI---KKGAIVIDVGINS 235 (294)
T ss_pred CHHHc---CCCCEEEEecccc
Confidence 76655 8999999998433
|
|
| >PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0011 Score=68.89 Aligned_cols=82 Identities=20% Similarity=0.284 Sum_probs=67.6
Q ss_pred cceeccCCEEEEEecC-hhHHHHHHHhhcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEecCCCccccccc
Q 007512 191 VGVSLVGKTLAVLGFG-KVGSEVARRAKGLGMHVIAHDPYAPADRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVL 269 (600)
Q Consensus 191 ~g~~l~gktiGIIGlG-~IG~~vA~~l~~~g~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Pl~~~t~~li 269 (600)
.+.++.||++.|||-+ .+|+.+|..|...|..|..+..+. -++.+..++||+|+.++.. .+++
T Consensus 149 ~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVtichs~T------------~~l~~~~~~ADIvIsAvGk----p~~i 212 (287)
T PRK14173 149 YGIPLAGKEVVVVGRSNIVGKPLAALLLREDATVTLAHSKT------------QDLPAVTRRADVLVVAVGR----PHLI 212 (287)
T ss_pred cCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEeCCCC------------CCHHHHHhhCCEEEEecCC----cCcc
Confidence 4679999999999987 579999999998899999887543 1478889999999999982 3567
Q ss_pred cHhHhccCCCceEEEEccCCcc
Q 007512 270 NDETFGKMKKGVRIINVARGGV 291 (600)
Q Consensus 270 ~~~~l~~mk~gailvNvarg~i 291 (600)
+.+++ |+|+++||+|--.+
T Consensus 213 ~~~~v---k~GavVIDVGin~~ 231 (287)
T PRK14173 213 TPEMV---RPGAVVVDVGINRV 231 (287)
T ss_pred CHHHc---CCCCEEEEccCccc
Confidence 76655 89999999986543
|
|
| >PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0009 Score=70.86 Aligned_cols=81 Identities=19% Similarity=0.281 Sum_probs=66.7
Q ss_pred cceeccCCEEEEEecCh-hHHHHHHHhhcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEecCCCccccccc
Q 007512 191 VGVSLVGKTLAVLGFGK-VGSEVARRAKGLGMHVIAHDPYAPADRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVL 269 (600)
Q Consensus 191 ~g~~l~gktiGIIGlG~-IG~~vA~~l~~~g~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Pl~~~t~~li 269 (600)
.+.++.||++.|||-+. +|+.+|..|...|+.|..+..+. -++.+..++||+|+.+++. .+++
T Consensus 208 ~~i~l~GK~vvVIGRS~iVGkPla~LL~~~~ATVTicHs~T------------~nl~~~~~~ADIvIsAvGk----p~~v 271 (345)
T PLN02897 208 SGVEIAGKNAVVIGRSNIVGLPMSLLLQRHDATVSTVHAFT------------KDPEQITRKADIVIAAAGI----PNLV 271 (345)
T ss_pred hCCCCCCCEEEEECCCccccHHHHHHHHHCCCEEEEEcCCC------------CCHHHHHhhCCEEEEccCC----cCcc
Confidence 46799999999999875 69999999998899999887543 1478889999999999983 3567
Q ss_pred cHhHhccCCCceEEEEccCCc
Q 007512 270 NDETFGKMKKGVRIINVARGG 290 (600)
Q Consensus 270 ~~~~l~~mk~gailvNvarg~ 290 (600)
..+++ |+|+++||+|--.
T Consensus 272 ~~d~v---k~GavVIDVGin~ 289 (345)
T PLN02897 272 RGSWL---KPGAVVIDVGTTP 289 (345)
T ss_pred CHHHc---CCCCEEEEccccc
Confidence 76655 8999999998533
|
|
| >cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.00054 Score=55.79 Aligned_cols=70 Identities=16% Similarity=0.238 Sum_probs=52.8
Q ss_pred EEEEEecCCCCChhhHHhhhhcCCccccceEeeeecCCCcEEEEEEeCCC---CcHHHHHHHhcCCCcceEEE
Q 007512 528 IILCRQVDQPGMIGTVGSILGSENVNVSFMSVGRVAPRKHAVMAIGVDEQ---PRKETLKKIGDVPAIEEFVF 597 (600)
Q Consensus 528 ~Liv~~~D~pG~Ia~V~~iL~~~~INIa~m~v~R~~~g~~al~~i~~D~~---~~~~~l~~l~~~~~v~~v~~ 597 (600)
.+-+...|+||.++.+++.|+++++||.+|.......++.+.+.+.++.. .-++++++|+++++|.++..
T Consensus 2 yl~i~~~d~~g~l~~i~~~l~~~~i~I~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~i~~L~~~~~V~~~~~ 74 (79)
T cd04881 2 YLRLTVKDKPGVLAKITGILAEHGISIESVIQKEADGGETAPVVIVTHETSEAALNAALAEIEALDAVQGVPS 74 (79)
T ss_pred EEEEEeCCCCcHHHHHHHHHHHcCCCeEEEEEcccCCCCceeEEEEEccCCHHHHHHHHHHHHcCccccCCce
Confidence 35566789999999999999999999999987543333667776655433 23368899999999877543
|
The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains. |
| >PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0011 Score=68.84 Aligned_cols=79 Identities=18% Similarity=0.300 Sum_probs=65.7
Q ss_pred cceeccCCEEEEEecCh-hHHHHHHHhhcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEecCCCccccccc
Q 007512 191 VGVSLVGKTLAVLGFGK-VGSEVARRAKGLGMHVIAHDPYAPADRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVL 269 (600)
Q Consensus 191 ~g~~l~gktiGIIGlG~-IG~~vA~~l~~~g~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Pl~~~t~~li 269 (600)
.+.++.||++.|||-+. +|+.+|..|...|+.|..++.+. -++.+..++||+|+.+++. .+++
T Consensus 152 y~i~l~Gk~vvViGrS~~VGkPla~lL~~~~ATVt~chs~T------------~dl~~~~k~ADIvIsAvGk----p~~i 215 (282)
T PRK14180 152 YGIKTEGAYAVVVGASNVVGKPVSQLLLNAKATVTTCHRFT------------TDLKSHTTKADILIVAVGK----PNFI 215 (282)
T ss_pred hCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEEcCCC------------CCHHHHhhhcCEEEEccCC----cCcC
Confidence 46789999999999874 79999999998899999987543 1577889999999999983 3457
Q ss_pred cHhHhccCCCceEEEEccC
Q 007512 270 NDETFGKMKKGVRIINVAR 288 (600)
Q Consensus 270 ~~~~l~~mk~gailvNvar 288 (600)
..+++ |+|+++||+|-
T Consensus 216 ~~~~v---k~gavVIDvGi 231 (282)
T PRK14180 216 TADMV---KEGAVVIDVGI 231 (282)
T ss_pred CHHHc---CCCcEEEEecc
Confidence 76554 89999999984
|
|
| >PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0012 Score=68.26 Aligned_cols=81 Identities=19% Similarity=0.221 Sum_probs=66.8
Q ss_pred cceeccCCEEEEEecCh-hHHHHHHHhhcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEecCCCccccccc
Q 007512 191 VGVSLVGKTLAVLGFGK-VGSEVARRAKGLGMHVIAHDPYAPADRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVL 269 (600)
Q Consensus 191 ~g~~l~gktiGIIGlG~-IG~~vA~~l~~~g~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Pl~~~t~~li 269 (600)
.+.++.||++.|||-+. +|+.+|..|...+..|..+..+. -++.+..++||+|+.+++. .+++
T Consensus 151 ~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~AtVtichs~T------------~nl~~~~~~ADIvI~AvGk----~~~i 214 (282)
T PRK14182 151 ARVDPKGKRALVVGRSNIVGKPMAMMLLERHATVTIAHSRT------------ADLAGEVGRADILVAAIGK----AELV 214 (282)
T ss_pred hCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC------------CCHHHHHhhCCEEEEecCC----cCcc
Confidence 46789999999999875 69999999998899999987643 1477889999999999983 4567
Q ss_pred cHhHhccCCCceEEEEccCCc
Q 007512 270 NDETFGKMKKGVRIINVARGG 290 (600)
Q Consensus 270 ~~~~l~~mk~gailvNvarg~ 290 (600)
..+++ |+|+++||+|-..
T Consensus 215 ~~~~i---k~gaiVIDvGin~ 232 (282)
T PRK14182 215 KGAWV---KEGAVVIDVGMNR 232 (282)
T ss_pred CHHHc---CCCCEEEEeecee
Confidence 77655 8999999998443
|
|
| >PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0012 Score=68.46 Aligned_cols=79 Identities=18% Similarity=0.230 Sum_probs=65.9
Q ss_pred cceeccCCEEEEEecCh-hHHHHHHHhhcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEecCCCccccccc
Q 007512 191 VGVSLVGKTLAVLGFGK-VGSEVARRAKGLGMHVIAHDPYAPADRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVL 269 (600)
Q Consensus 191 ~g~~l~gktiGIIGlG~-IG~~vA~~l~~~g~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Pl~~~t~~li 269 (600)
.+.++.||++.|||-+. +|+.+|..|...|+.|..+..+. .+|.+..++||+|+.++. . .+++
T Consensus 153 y~i~l~GK~vvViGrS~iVGkPla~lL~~~~ATVtichs~T------------~~L~~~~~~ADIvV~AvG-k---p~~i 216 (288)
T PRK14171 153 YEPNLTGKNVVIIGRSNIVGKPLSALLLKENCSVTICHSKT------------HNLSSITSKADIVVAAIG-S---PLKL 216 (288)
T ss_pred hCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC------------CCHHHHHhhCCEEEEccC-C---CCcc
Confidence 46789999999999875 69999999998899999887542 247889999999999998 2 3577
Q ss_pred cHhHhccCCCceEEEEccC
Q 007512 270 NDETFGKMKKGVRIINVAR 288 (600)
Q Consensus 270 ~~~~l~~mk~gailvNvar 288 (600)
..+++ |+|+++||+|-
T Consensus 217 ~~~~v---k~GavVIDvGi 232 (288)
T PRK14171 217 TAEYF---NPESIVIDVGI 232 (288)
T ss_pred CHHHc---CCCCEEEEeec
Confidence 76655 89999999983
|
|
| >PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0014 Score=68.05 Aligned_cols=81 Identities=20% Similarity=0.288 Sum_probs=66.0
Q ss_pred cceeccCCEEEEEecCh-hHHHHHHHhhcC----CCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEecCCCccc
Q 007512 191 VGVSLVGKTLAVLGFGK-VGSEVARRAKGL----GMHVIAHDPYAPADRARAIGVDLVSFDEAIATADFISLHMPLTPAT 265 (600)
Q Consensus 191 ~g~~l~gktiGIIGlG~-IG~~vA~~l~~~----g~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Pl~~~t 265 (600)
.+.++.||++.|||-+. +|+.+|..|... +..|..+..+. -++.+.+++||+|+.+++.
T Consensus 147 ~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~AtVtvchs~T------------~~l~~~~~~ADIvV~AvG~---- 210 (287)
T PRK14181 147 YEIPLHGRHVAIVGRSNIVGKPLAALLMQKHPDTNATVTLLHSQS------------ENLTEILKTADIIIAAIGV---- 210 (287)
T ss_pred hCCCCCCCEEEEECCCccchHHHHHHHHhCcCCCCCEEEEeCCCC------------CCHHHHHhhCCEEEEccCC----
Confidence 46799999999999875 699999999876 78999886542 1588889999999999983
Q ss_pred cccccHhHhccCCCceEEEEccCCc
Q 007512 266 SKVLNDETFGKMKKGVRIINVARGG 290 (600)
Q Consensus 266 ~~li~~~~l~~mk~gailvNvarg~ 290 (600)
.+++..+++ |+|+++||+|--.
T Consensus 211 p~~i~~~~i---k~GavVIDvGin~ 232 (287)
T PRK14181 211 PLFIKEEMI---AEKAVIVDVGTSR 232 (287)
T ss_pred cCccCHHHc---CCCCEEEEecccc
Confidence 356777655 8999999998544
|
|
| >TIGR00119 acolac_sm acetolactate synthase, small subunit | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0011 Score=62.88 Aligned_cols=72 Identities=17% Similarity=0.262 Sum_probs=57.6
Q ss_pred cEEEEEecCCCCChhhHHhhhhcCCccccceEeeeecCCCcEEEEEEeCC--CCcHHHHHHHhcCCCcceEEEe
Q 007512 527 SIILCRQVDQPGMIGTVGSILGSENVNVSFMSVGRVAPRKHAVMAIGVDE--QPRKETLKKIGDVPAIEEFVFL 598 (600)
Q Consensus 527 ~~Liv~~~D~pG~Ia~V~~iL~~~~INIa~m~v~R~~~g~~al~~i~~D~--~~~~~~l~~l~~~~~v~~v~~i 598 (600)
|+|-+...|+||++++|+++++++|+||.++.++.....+...|.+.++. ..-+.+.++|.++..|.+|..+
T Consensus 2 ~~isI~ven~pGvL~rI~~lf~rrg~NI~Sl~v~~t~~~~~sriti~V~~d~~~i~qi~kQl~Kli~V~~V~~~ 75 (157)
T TIGR00119 2 HILSVLVENEPGVLSRVAGLFTRRGFNIESLTVGPTEDPDLSRMTIVVVGDDKVLEQITKQLNKLVDVIKVSDL 75 (157)
T ss_pred EEEEEEEcCCCcHHHHHHHHHHhCCceEEEEEEeecCCCCEEEEEEEEECCHHHHHHHHHHHhcCccEEEEEec
Confidence 57788899999999999999999999999999998765666777777765 2333667778888888777654
|
acetohydroxyacid synthase is a synonym. |
| >COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.00079 Score=69.71 Aligned_cols=94 Identities=29% Similarity=0.368 Sum_probs=72.5
Q ss_pred eccCCEEEEEecChhHHHHHHHhhcCCCEEEEECCCCChhHHH--HcCCc-------ccCHHHHhccCCEEEEecCC-Cc
Q 007512 194 SLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPADRAR--AIGVD-------LVSFDEAIATADFISLHMPL-TP 263 (600)
Q Consensus 194 ~l~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~~~~a~--~~g~~-------~~~l~ell~~aDvV~l~~Pl-~~ 263 (600)
.+..-++.|||.|-+|..-|+.+.++|.+|...|.+.+.-+.. ..+.+ ...+++.+.++|+|+-++=. ..
T Consensus 165 GV~~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~~rv~~~~st~~~iee~v~~aDlvIgaVLIpga 244 (371)
T COG0686 165 GVLPAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFGGRVHTLYSTPSNIEEAVKKADLVIGAVLIPGA 244 (371)
T ss_pred CCCCccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhCceeEEEEcCHHHHHHHhhhccEEEEEEEecCC
Confidence 3566789999999999999999999999999998775322111 11222 12488999999999976542 33
Q ss_pred cccccccHhHhccCCCceEEEEcc
Q 007512 264 ATSKVLNDETFGKMKKGVRIINVA 287 (600)
Q Consensus 264 ~t~~li~~~~l~~mk~gailvNva 287 (600)
..-.++.++.+++||||++|||++
T Consensus 245 kaPkLvt~e~vk~MkpGsVivDVA 268 (371)
T COG0686 245 KAPKLVTREMVKQMKPGSVIVDVA 268 (371)
T ss_pred CCceehhHHHHHhcCCCcEEEEEE
Confidence 456788899999999999999986
|
|
| >PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0013 Score=69.95 Aligned_cols=80 Identities=21% Similarity=0.211 Sum_probs=66.4
Q ss_pred cceeccCCEEEEEecCh-hHHHHHHHhhcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEecCCCccccccc
Q 007512 191 VGVSLVGKTLAVLGFGK-VGSEVARRAKGLGMHVIAHDPYAPADRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVL 269 (600)
Q Consensus 191 ~g~~l~gktiGIIGlG~-IG~~vA~~l~~~g~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Pl~~~t~~li 269 (600)
.+.++.||++.|||-+. +|+.+|..|...++.|..+.... -++.+.+++||+|+.++.. .+++
T Consensus 225 y~i~l~GK~vvVIGRS~iVGkPLa~LL~~~~ATVTicHs~T------------~nl~~~~r~ADIVIsAvGk----p~~i 288 (364)
T PLN02616 225 YNVEIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT------------KNPEEITREADIIISAVGQ----PNMV 288 (364)
T ss_pred hCCCCCCCEEEEECCCccccHHHHHHHHHCCCeEEEeCCCC------------CCHHHHHhhCCEEEEcCCC----cCcC
Confidence 36789999999999875 69999999999999999887542 2578889999999999982 3567
Q ss_pred cHhHhccCCCceEEEEccCC
Q 007512 270 NDETFGKMKKGVRIINVARG 289 (600)
Q Consensus 270 ~~~~l~~mk~gailvNvarg 289 (600)
..+++ |+|+++||+|--
T Consensus 289 ~~d~v---K~GAvVIDVGIn 305 (364)
T PLN02616 289 RGSWI---KPGAVVIDVGIN 305 (364)
T ss_pred CHHHc---CCCCEEEecccc
Confidence 77655 899999999843
|
|
| >PRK06141 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0016 Score=68.87 Aligned_cols=87 Identities=22% Similarity=0.258 Sum_probs=60.2
Q ss_pred cCCEEEEEecChhHHHHHHHhhc-CC-CEEEEECCCCCh-h-HHHHc---C--Ccc-cCHHHHhccCCEEEEecCCCccc
Q 007512 196 VGKTLAVLGFGKVGSEVARRAKG-LG-MHVIAHDPYAPA-D-RARAI---G--VDL-VSFDEAIATADFISLHMPLTPAT 265 (600)
Q Consensus 196 ~gktiGIIGlG~IG~~vA~~l~~-~g-~~V~~~d~~~~~-~-~a~~~---g--~~~-~~l~ell~~aDvV~l~~Pl~~~t 265 (600)
..++++|||.|.+|+.+++.+.. ++ .+|.+|+++... + .+.+. | +.. .++++.+.+||+|+.++|..
T Consensus 124 ~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~~~~~g~~~~~~~~~~~av~~aDIVi~aT~s~--- 200 (314)
T PRK06141 124 DASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAKAEALAAELRAQGFDAEVVTDLEAAVRQADIISCATLST--- 200 (314)
T ss_pred CCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhcCCceEEeCCHHHHHhcCCEEEEeeCCC---
Confidence 36799999999999999986653 44 689999987632 2 22221 4 222 47888999999998888844
Q ss_pred cccccHhHhccCCCceEEEEccC
Q 007512 266 SKVLNDETFGKMKKGVRIINVAR 288 (600)
Q Consensus 266 ~~li~~~~l~~mk~gailvNvar 288 (600)
..++..+ .++||+.+.-++.
T Consensus 201 ~pvl~~~---~l~~g~~i~~ig~ 220 (314)
T PRK06141 201 EPLVRGE---WLKPGTHLDLVGN 220 (314)
T ss_pred CCEecHH---HcCCCCEEEeeCC
Confidence 4455543 4689984444443
|
|
| >PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.0012 Score=62.97 Aligned_cols=72 Identities=17% Similarity=0.255 Sum_probs=58.5
Q ss_pred cEEEEEecCCCCChhhHHhhhhcCCccccceEeeeecCCCcEEEEEEeCC--CCcHHHHHHHhcCCCcceEEEe
Q 007512 527 SIILCRQVDQPGMIGTVGSILGSENVNVSFMSVGRVAPRKHAVMAIGVDE--QPRKETLKKIGDVPAIEEFVFL 598 (600)
Q Consensus 527 ~~Liv~~~D~pG~Ia~V~~iL~~~~INIa~m~v~R~~~g~~al~~i~~D~--~~~~~~l~~l~~~~~v~~v~~i 598 (600)
|++-+...|+||++++|+++++++|+||.++.++.....+...+.+.++. ..=+.+.++|.++..|.+|..+
T Consensus 3 ~~IsV~veN~pGvL~rI~~lf~rrg~NI~Sl~v~~te~~~~sriti~V~~~~~~i~qi~kQl~KLidV~~V~~~ 76 (161)
T PRK11895 3 HTLSVLVENEPGVLSRVAGLFSRRGYNIESLTVGPTEDPGLSRMTIVTSGDEQVIEQITKQLNKLIDVLKVVDL 76 (161)
T ss_pred EEEEEEEcCCCcHHHHHHHHHHhCCCcEEEEEeeecCCCCEEEEEEEEECCHHHHHHHHHHHhccccEEEEEec
Confidence 67888899999999999999999999999999987765566666666654 3344778888888888887654
|
|
| >PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0018 Score=67.25 Aligned_cols=111 Identities=19% Similarity=0.292 Sum_probs=81.4
Q ss_pred cceeccCCEEEEEecC-hhHHHHHHHhhc--CCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEecCCCccccc
Q 007512 191 VGVSLVGKTLAVLGFG-KVGSEVARRAKG--LGMHVIAHDPYAPADRARAIGVDLVSFDEAIATADFISLHMPLTPATSK 267 (600)
Q Consensus 191 ~g~~l~gktiGIIGlG-~IG~~vA~~l~~--~g~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Pl~~~t~~ 267 (600)
.+.++.||++.|||-+ .+|+.+|..|.. .++.|..+.... -++.+.+++||+|+.+++.. +
T Consensus 152 ~~i~l~Gk~vvViGrS~~VGkPla~lL~~~~~~atVtvchs~T------------~~l~~~~k~ADIvV~AvGkp----~ 215 (284)
T PRK14193 152 YDVELAGAHVVVIGRGVTVGRPIGLLLTRRSENATVTLCHTGT------------RDLAAHTRRADIIVAAAGVA----H 215 (284)
T ss_pred hCCCCCCCEEEEECCCCcchHHHHHHHhhccCCCEEEEeCCCC------------CCHHHHHHhCCEEEEecCCc----C
Confidence 4679999999999987 579999999987 689999887542 25888999999999999832 4
Q ss_pred cccHhHhccCCCceEEEEccCCccccHHHHHHhHhcCCceEEEEeccCCCCCCCCCccccCCcEEEcCCCCCCcH
Q 007512 268 VLNDETFGKMKKGVRIINVARGGVIDEEALVRALDSGRVAQAALDVFTEEPPPADSKLVQHERVTVTPHLGASTM 342 (600)
Q Consensus 268 li~~~~l~~mk~gailvNvarg~ivde~aL~~aL~~g~i~ga~lDv~~~EP~~~~~~L~~~~nvilTPH~~~~t~ 342 (600)
++..+++ |+|+++||+|--.+ .+|++.| ||- .+ ..+... .+||-.||.-.
T Consensus 216 ~i~~~~i---k~GavVIDvGin~~----------~~gkl~G---Dvd-~~-------v~~~a~-~iTPVPGGVGp 265 (284)
T PRK14193 216 LVTADMV---KPGAAVLDVGVSRA----------GDGKLVG---DVH-PD-------VWEVAG-AVSPNPGGVGP 265 (284)
T ss_pred ccCHHHc---CCCCEEEEcccccc----------CCCcEEe---ecC-Hh-------HHhhCC-EEeCCCCChhH
Confidence 6776655 89999999985443 2445433 443 11 122233 38999888754
|
|
| >PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0016 Score=52.25 Aligned_cols=61 Identities=16% Similarity=0.335 Sum_probs=49.4
Q ss_pred CCCCChhhHHhhhhcCCccccceEeeeecCCCcEEEEEEeCC--CCcHHHHHHHhcCCCcceE
Q 007512 535 DQPGMIGTVGSILGSENVNVSFMSVGRVAPRKHAVMAIGVDE--QPRKETLKKIGDVPAIEEF 595 (600)
Q Consensus 535 D~pG~Ia~V~~iL~~~~INIa~m~v~R~~~g~~al~~i~~D~--~~~~~~l~~l~~~~~v~~v 595 (600)
|+||++.+|+.++...|+||.+|.++..+..+..-+.|.++. ..-+.+.++|.++.+|.+|
T Consensus 1 n~~GvL~Ri~~vf~rRg~nI~sl~v~~~~~~~~~riti~v~~~~~~i~~l~~Ql~KlidV~~V 63 (63)
T PF13710_consen 1 NQPGVLNRITGVFRRRGFNIESLSVGPTEDPGISRITIVVSGDDREIEQLVKQLEKLIDVVKV 63 (63)
T ss_dssp SSTTHHHHHHHHHHTTT-EECEEEEEE-SSTTEEEEEEEEES-CCHHHHHHHHHHCSTTEEEE
T ss_pred CCcHHHHHHHHHHhcCCeEEeeEEeeecCCCCEEEEEEEEeeCchhHHHHHHHHhccCCeEeC
Confidence 689999999999999999999999999777777766666665 3344788999999888765
|
|
| >PRK07340 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0017 Score=68.34 Aligned_cols=87 Identities=13% Similarity=0.087 Sum_probs=65.0
Q ss_pred cCCEEEEEecChhHHHHHHHhhc-CC-CEEEEECCCCCh--hHHHHc---CCc--ccCHHHHhccCCEEEEecCCCcccc
Q 007512 196 VGKTLAVLGFGKVGSEVARRAKG-LG-MHVIAHDPYAPA--DRARAI---GVD--LVSFDEAIATADFISLHMPLTPATS 266 (600)
Q Consensus 196 ~gktiGIIGlG~IG~~vA~~l~~-~g-~~V~~~d~~~~~--~~a~~~---g~~--~~~l~ell~~aDvV~l~~Pl~~~t~ 266 (600)
..++++|||.|.+|+..++.+.. ++ -+|.+||+.... ..+.+. ++. ..++++++.+||+|+.|+|.. .
T Consensus 124 ~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~~~~~~~~~~~~~av~~aDiVitaT~s~---~ 200 (304)
T PRK07340 124 PPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARALGPTAEPLDGEAIPEAVDLVVTATTSR---T 200 (304)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCCeeEECCHHHHhhcCCEEEEccCCC---C
Confidence 46799999999999999999863 56 479999987622 222222 333 237889999999999999955 3
Q ss_pred ccccHhHhccCCCceEEEEccCC
Q 007512 267 KVLNDETFGKMKKGVRIINVARG 289 (600)
Q Consensus 267 ~li~~~~l~~mk~gailvNvarg 289 (600)
.++.. .+|||+.|+.+|.-
T Consensus 201 Pl~~~----~~~~g~hi~~iGs~ 219 (304)
T PRK07340 201 PVYPE----AARAGRLVVAVGAF 219 (304)
T ss_pred ceeCc----cCCCCCEEEecCCC
Confidence 55543 36999999999853
|
|
| >COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.014 Score=61.34 Aligned_cols=174 Identities=22% Similarity=0.171 Sum_probs=101.8
Q ss_pred CCEEEEEecChhHHHHHHHhhcCCCEEEEECCCCCh-hH-----------HHHcCC-------------c-ccCHHHHhc
Q 007512 197 GKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPA-DR-----------ARAIGV-------------D-LVSFDEAIA 250 (600)
Q Consensus 197 gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~~-~~-----------a~~~g~-------------~-~~~l~ell~ 250 (600)
-+++||||.|.||+.+|..+..-|+.|..+|++... +. ..+.|. . ..++. .++
T Consensus 3 i~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~~~~~~-~l~ 81 (307)
T COG1250 3 IKKVAVIGAGVMGAGIAAVFALAGYDVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITPTTDLA-ALK 81 (307)
T ss_pred ccEEEEEcccchhHHHHHHHhhcCCceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccccCchh-Hhc
Confidence 479999999999999999998877999999988421 11 111121 0 01222 689
Q ss_pred cCCEEEEecCCCccccccccHhHhccCCCceEEEEccCCccccHHHHHHhHhcCCceEEEEeccCCCCCCCCCccccCCc
Q 007512 251 TADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVIDEEALVRALDSGRVAQAALDVFTEEPPPADSKLVQHER 330 (600)
Q Consensus 251 ~aDvV~l~~Pl~~~t~~li~~~~l~~mk~gailvNvarg~ivde~aL~~aL~~g~i~ga~lDv~~~EP~~~~~~L~~~~n 330 (600)
+||+|+=++|-+-+.++-+-++.=..+||+++|=.-.++= ...++.++++. +=...|++-|.+-|+ -||.+
T Consensus 82 ~~DlVIEAv~E~levK~~vf~~l~~~~~~~aIlASNTSsl--~it~ia~~~~r-per~iG~HFfNP~~~---m~LVE--- 152 (307)
T COG1250 82 DADLVIEAVVEDLELKKQVFAELEALAKPDAILASNTSSL--SITELAEALKR-PERFIGLHFFNPVPL---MPLVE--- 152 (307)
T ss_pred cCCEEEEeccccHHHHHHHHHHHHhhcCCCcEEeeccCCC--CHHHHHHHhCC-chhEEEEeccCCCCc---ceeEE---
Confidence 9999999999887777655555555688998875433332 34445555533 222367777765433 34543
Q ss_pred EEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCccccCCCCChhhhhcc-cchHHHHHHH
Q 007512 331 VTVTPHLGASTMEAQEGVAIEIAEAVVGALKGELAATAVNAPMVPAEVLTEL-KPFVELAEKL 392 (600)
Q Consensus 331 vilTPH~~~~t~ea~~~~~~~~~~~l~~~l~g~~~~~~vn~~~i~~~~~~~~-~p~~~la~~l 392 (600)
+|-+.+. . .++++.+.+|.+...-.. +..-..+--.++.+ .||+..|.++
T Consensus 153 vI~g~~T----~-------~e~~~~~~~~~~~igK~~-vv~~D~pGFi~NRil~~~~~eA~~l 203 (307)
T COG1250 153 VIRGEKT----S-------DETVERVVEFAKKIGKTP-VVVKDVPGFIVNRLLAALLNEAIRL 203 (307)
T ss_pred EecCCCC----C-------HHHHHHHHHHHHHcCCCC-EeecCCCceehHhHHHHHHHHHHHH
Confidence 4444432 1 334455555554422111 22112223344443 4777777666
|
|
| >cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1 | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.0022 Score=64.78 Aligned_cols=34 Identities=41% Similarity=0.664 Sum_probs=31.6
Q ss_pred eeccCCEEEEEecChhHHHHHHHhhcCCCEEEEE
Q 007512 193 VSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAH 226 (600)
Q Consensus 193 ~~l~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~ 226 (600)
.++.|+++.|.|+|.+|+.+|+.|..+|++|++.
T Consensus 27 ~~l~~~~v~I~G~G~VG~~~a~~L~~~g~~vv~v 60 (227)
T cd01076 27 IGLAGARVAIQGFGNVGSHAARFLHEAGAKVVAV 60 (227)
T ss_pred CCccCCEEEEECCCHHHHHHHHHHHHCCCEEEEE
Confidence 5789999999999999999999999999999953
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids |
| >PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0024 Score=66.55 Aligned_cols=81 Identities=20% Similarity=0.263 Sum_probs=65.0
Q ss_pred cceeccCCEEEEEecCh-hHHHHHHHhhcC----CCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEecCCCccc
Q 007512 191 VGVSLVGKTLAVLGFGK-VGSEVARRAKGL----GMHVIAHDPYAPADRARAIGVDLVSFDEAIATADFISLHMPLTPAT 265 (600)
Q Consensus 191 ~g~~l~gktiGIIGlG~-IG~~vA~~l~~~----g~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Pl~~~t 265 (600)
.+.++.||++.|||-+. +|+.+|..|... ++.|..+..+. -++.+..++||+|+.+++.
T Consensus 151 ~~i~l~GK~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~T------------~nl~~~~~~ADIvIsAvGk---- 214 (293)
T PRK14185 151 YHIETSGKKCVVLGRSNIVGKPMAQLMMQKAYPGDCTVTVCHSRS------------KNLKKECLEADIIIAALGQ---- 214 (293)
T ss_pred hCCCCCCCEEEEECCCccchHHHHHHHHcCCCCCCCEEEEecCCC------------CCHHHHHhhCCEEEEccCC----
Confidence 46789999999999875 699999999865 78999886543 1578889999999999983
Q ss_pred cccccHhHhccCCCceEEEEccCCc
Q 007512 266 SKVLNDETFGKMKKGVRIINVARGG 290 (600)
Q Consensus 266 ~~li~~~~l~~mk~gailvNvarg~ 290 (600)
.+++..++ .|+|+++||+|--.
T Consensus 215 p~~i~~~~---vk~gavVIDvGin~ 236 (293)
T PRK14185 215 PEFVKADM---VKEGAVVIDVGTTR 236 (293)
T ss_pred cCccCHHH---cCCCCEEEEecCcc
Confidence 34677655 48999999998533
|
|
| >COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0017 Score=66.82 Aligned_cols=82 Identities=20% Similarity=0.311 Sum_probs=67.0
Q ss_pred cceeccCCEEEEEecChh-HHHHHHHhhcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEecCCCccccccc
Q 007512 191 VGVSLVGKTLAVLGFGKV-GSEVARRAKGLGMHVIAHDPYAPADRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVL 269 (600)
Q Consensus 191 ~g~~l~gktiGIIGlG~I-G~~vA~~l~~~g~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Pl~~~t~~li 269 (600)
.+.+|+||++.|||-+.| |+.+|..|...++.|..+..+. -++.+..++||+|+.++-. .+++
T Consensus 150 ~~i~l~Gk~~vVVGrS~iVGkPla~lL~~~naTVtvcHs~T------------~~l~~~~k~ADIvv~AvG~----p~~i 213 (283)
T COG0190 150 YGIDLRGKNVVVVGRSNIVGKPLALLLLNANATVTVCHSRT------------KDLASITKNADIVVVAVGK----PHFI 213 (283)
T ss_pred hCCCCCCCEEEEECCCCcCcHHHHHHHHhCCCEEEEEcCCC------------CCHHHHhhhCCEEEEecCC----cccc
Confidence 467999999999999975 8999999999999999987653 1477889999999999862 3566
Q ss_pred cHhHhccCCCceEEEEccCCcc
Q 007512 270 NDETFGKMKKGVRIINVARGGV 291 (600)
Q Consensus 270 ~~~~l~~mk~gailvNvarg~i 291 (600)
..++ .|+|+++||+|--.+
T Consensus 214 ~~d~---vk~gavVIDVGinrv 232 (283)
T COG0190 214 KADM---VKPGAVVIDVGINRV 232 (283)
T ss_pred cccc---ccCCCEEEecCCccc
Confidence 6544 589999999985443
|
|
| >PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.00071 Score=59.61 Aligned_cols=86 Identities=24% Similarity=0.297 Sum_probs=60.0
Q ss_pred eccCCEEEEEecChhHHHHHHHhhcCCCEEEEECCCCChhHHHHcCCcc--cCHHHHhccCCEEEEecCCCccccccccH
Q 007512 194 SLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPADRARAIGVDL--VSFDEAIATADFISLHMPLTPATSKVLND 271 (600)
Q Consensus 194 ~l~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~~~~a~~~g~~~--~~l~ell~~aDvV~l~~Pl~~~t~~li~~ 271 (600)
.+.|+++.|||.|.+|..=++.|...|.+|.+++|.. ...+..+++ ..+++.+..+|+|+.+++... +++
T Consensus 4 ~l~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~---~~~~~~i~~~~~~~~~~l~~~~lV~~at~d~~-----~n~ 75 (103)
T PF13241_consen 4 DLKGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEI---EFSEGLIQLIRREFEEDLDGADLVFAATDDPE-----LNE 75 (103)
T ss_dssp --TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE---HHHHTSCEEEESS-GGGCTTESEEEE-SS-HH-----HHH
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCch---hhhhhHHHHHhhhHHHHHhhheEEEecCCCHH-----HHH
Confidence 6889999999999999999999999999999999875 112223322 245677899999998887322 455
Q ss_pred hHhccCCCceEEEEcc
Q 007512 272 ETFGKMKKGVRIINVA 287 (600)
Q Consensus 272 ~~l~~mk~gailvNva 287 (600)
.....++.--+++|++
T Consensus 76 ~i~~~a~~~~i~vn~~ 91 (103)
T PF13241_consen 76 AIYADARARGILVNVV 91 (103)
T ss_dssp HHHHHHHHTTSEEEET
T ss_pred HHHHHHhhCCEEEEEC
Confidence 5555566556788875
|
|
| >PRK00194 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.0006 Score=58.28 Aligned_cols=65 Identities=23% Similarity=0.182 Sum_probs=47.9
Q ss_pred ccEEEEEecCCCCChhhHHhhhhcCCccccceEeeeecCCCcEEEEEEeCCC---CcH-HHHHHHhcCCCc
Q 007512 526 GSIILCRQVDQPGMIGTVGSILGSENVNVSFMSVGRVAPRKHAVMAIGVDEQ---PRK-ETLKKIGDVPAI 592 (600)
Q Consensus 526 ~~~Liv~~~D~pG~Ia~V~~iL~~~~INIa~m~v~R~~~g~~al~~i~~D~~---~~~-~~l~~l~~~~~v 592 (600)
.+.+.+..+|+||+++.|++.|+++|+||..++... .++...+.+.++-+ .+. ++.++|.++...
T Consensus 3 ~~~ltv~g~DrpGiva~vt~~la~~g~nI~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~l~~l~~~ 71 (90)
T PRK00194 3 KAIITVIGKDKVGIIAGVSTVLAELNVNILDISQTI--MDGYFTMIMLVDISESKKDFAELKEELEELGKE 71 (90)
T ss_pred eEEEEEEcCCCCCHHHHHHHHHHHcCCCEEehhhHh--hCCeeEEEEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 456778899999999999999999999999999875 45666675554433 333 454666665544
|
|
| >TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0031 Score=66.40 Aligned_cols=113 Identities=21% Similarity=0.259 Sum_probs=69.4
Q ss_pred CEEEEEecChhHHHHHHHhhcCCC-EEEEECCCCChhHHHHc---------C----Ccc-cCHHHHhccCCEEEEecCCC
Q 007512 198 KTLAVLGFGKVGSEVARRAKGLGM-HVIAHDPYAPADRARAI---------G----VDL-VSFDEAIATADFISLHMPLT 262 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~g~-~V~~~d~~~~~~~a~~~---------g----~~~-~~l~ell~~aDvV~l~~Pl~ 262 (600)
++|+|||.|.+|..+|..+...|. +|+.+|.......+... . +.. .++++ +++||+|+++++.
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~~l~~g~a~d~~~~~~~~~~~~~i~~t~d~~~-~~~aDiVIitag~- 79 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVEGIPQGKALDMYEASPVGGFDTKVTGTNNYAD-TANSDIVVITAGL- 79 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCCChhHHHHHhhhhhhhccCCCcEEEecCCHHH-hCCCCEEEEcCCC-
Confidence 589999999999999999887665 89999986543332211 1 111 35666 7999999999983
Q ss_pred cccccc-------ccH-------hHhccCCCceEEEEccCCccccHHHHHHh--HhcCCceEEE--Ee
Q 007512 263 PATSKV-------LND-------ETFGKMKKGVRIINVARGGVIDEEALVRA--LDSGRVAQAA--LD 312 (600)
Q Consensus 263 ~~t~~l-------i~~-------~~l~~mk~gailvNvarg~ivde~aL~~a--L~~g~i~ga~--lD 312 (600)
+...+. .|. +.+....+++++|+++-.-=+....+.+. +...++.|.+ ||
T Consensus 80 p~~~~~sR~~l~~~N~~iv~~i~~~I~~~~p~~~iIv~tNP~di~t~~~~~~sg~~~~rviG~g~~ld 147 (305)
T TIGR01763 80 PRKPGMSREDLLSMNAGIVREVTGRIMEHSPNPIIVVVSNPLDAMTYVAWQKSGFPKERVIGQAGVLD 147 (305)
T ss_pred CCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHHCcCHHHEEEeccchH
Confidence 322221 111 12333457889999864222223333333 4444566654 56
|
The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable. |
| >TIGR00507 aroE shikimate 5-dehydrogenase | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.0033 Score=64.93 Aligned_cols=104 Identities=16% Similarity=0.194 Sum_probs=68.0
Q ss_pred ccCCEEEEEecChhHHHHHHHhhcCCCEEEEECCCCCh--hHHHHc---C-CcccCHHHH-hccCCEEEEecCCC--ccc
Q 007512 195 LVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPA--DRARAI---G-VDLVSFDEA-IATADFISLHMPLT--PAT 265 (600)
Q Consensus 195 l~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~~--~~a~~~---g-~~~~~l~el-l~~aDvV~l~~Pl~--~~t 265 (600)
..+++++|+|.|.+|+.++..+...|.+|.++|+.... +.+... + ....++++. +.++|+|+.|+|.. +..
T Consensus 115 ~~~k~vliiGaGg~g~aia~~L~~~g~~v~v~~R~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~DivInatp~gm~~~~ 194 (270)
T TIGR00507 115 RPNQRVLIIGAGGAARAVALPLLKADCNVIIANRTVSKAEELAERFQRYGEIQAFSMDELPLHRVDLIINATSAGMSGNI 194 (270)
T ss_pred ccCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhhcCceEEechhhhcccCccEEEECCCCCCCCCC
Confidence 46789999999999999999999889999999887522 112221 2 122344443 35899999999974 211
Q ss_pred cc-cccHhHhccCCCceEEEEccCCccccHHHHHHhHhc
Q 007512 266 SK-VLNDETFGKMKKGVRIINVARGGVIDEEALVRALDS 303 (600)
Q Consensus 266 ~~-li~~~~l~~mk~gailvNvarg~ivde~aL~~aL~~ 303 (600)
.. .++ ...++++.+++|+.-.+.. . .+.++.++
T Consensus 195 ~~~~~~---~~~l~~~~~v~D~~y~p~~-T-~ll~~A~~ 228 (270)
T TIGR00507 195 DEPPVP---AEKLKEGMVVYDMVYNPGE-T-PFLAEAKS 228 (270)
T ss_pred CCCCCC---HHHcCCCCEEEEeccCCCC-C-HHHHHHHH
Confidence 11 122 3447888899998765542 2 34444443
|
This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain. |
| >TIGR01921 DAP-DH diaminopimelate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.0023 Score=67.62 Aligned_cols=85 Identities=13% Similarity=0.182 Sum_probs=59.2
Q ss_pred CEEEEEecChhHHHHHHHhhcC-CCEEEE-ECCCCChhHHHHcCCc-ccCHHHHhccCCEEEEecCCCccccccccHhHh
Q 007512 198 KTLAVLGFGKVGSEVARRAKGL-GMHVIA-HDPYAPADRARAIGVD-LVSFDEAIATADFISLHMPLTPATSKVLNDETF 274 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~-g~~V~~-~d~~~~~~~a~~~g~~-~~~l~ell~~aDvV~l~~Pl~~~t~~li~~~~l 274 (600)
.+|||||+|.||+.+++.+... ++++.+ ||++.........++. ..+.++++.+.|+|++|+|.... -....
T Consensus 4 IRVgIVG~GnIGr~~a~al~~~pd~ELVgV~dr~~~~~~~~~~~v~~~~d~~e~l~~iDVViIctPs~th-----~~~~~ 78 (324)
T TIGR01921 4 IRAAIVGYGNLGRSVEKAIQQQPDMELVGVFSRRGAETLDTETPVYAVADDEKHLDDVDVLILCMGSATD-----IPEQA 78 (324)
T ss_pred cEEEEEeecHHHHHHHHHHHhCCCcEEEEEEcCCcHHHHhhcCCccccCCHHHhccCCCEEEEcCCCccC-----HHHHH
Confidence 5899999999999999999866 899887 6877422222223332 24677888999999999995432 12233
Q ss_pred ccCCCceEEEEcc
Q 007512 275 GKMKKGVRIINVA 287 (600)
Q Consensus 275 ~~mk~gailvNva 287 (600)
..|+.|.=+|++.
T Consensus 79 ~~L~aG~NVV~s~ 91 (324)
T TIGR01921 79 PYFAQFANTVDSF 91 (324)
T ss_pred HHHHcCCCEEECC
Confidence 3466676777774
|
This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized. |
| >PRK06349 homoserine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.078 Score=58.56 Aligned_cols=67 Identities=13% Similarity=0.229 Sum_probs=45.9
Q ss_pred cEEEEEecCCCCChhhHHhhhhcCCccccceEeeeecCCCcEEEEEEeCCCC---cHHHHHHHhcCCCcce
Q 007512 527 SIILCRQVDQPGMIGTVGSILGSENVNVSFMSVGRVAPRKHAVMAIGVDEQP---RKETLKKIGDVPAIEE 594 (600)
Q Consensus 527 ~~Liv~~~D~pG~Ia~V~~iL~~~~INIa~m~v~R~~~g~~al~~i~~D~~~---~~~~l~~l~~~~~v~~ 594 (600)
+.|-+...|+||++++|+.+|++++|||..+..... .++.+-+++-++... =.+++++|.+++.|..
T Consensus 349 yylRl~v~d~pGvLa~I~~~f~~~~vsI~si~q~~~-~~~~~~ivivT~~~~e~~l~~~i~~L~~l~~V~~ 418 (426)
T PRK06349 349 YYLRLLVADKPGVLAKIAAIFAENGISIESILQKGA-GGEGAEIVIVTHETSEAALRAALAAIEALDVVLG 418 (426)
T ss_pred EEEEEEecCCcchHHHHHHHHhhcCccEEEEEeccC-CCCceeEEEEEEeCCHHHHHHHHHHHhcCccccc
Confidence 556666789999999999999999999998876543 233343333333222 2256677777777654
|
|
| >PRK06718 precorrin-2 dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.0017 Score=64.35 Aligned_cols=90 Identities=18% Similarity=0.210 Sum_probs=60.7
Q ss_pred ceeccCCEEEEEecChhHHHHHHHhhcCCCEEEEECCCCChhH--HHHcC-Cccc--C-HHHHhccCCEEEEecCCCccc
Q 007512 192 GVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPADR--ARAIG-VDLV--S-FDEAIATADFISLHMPLTPAT 265 (600)
Q Consensus 192 g~~l~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~~~~--a~~~g-~~~~--~-l~ell~~aDvV~l~~Pl~~~t 265 (600)
...+.||++.|||.|.+|...++.|...|.+|.+++|....+. ....+ +.+. . .++.+..+|+|+.++...+
T Consensus 5 ~l~l~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~~~~~l~~l~~~~~i~~~~~~~~~~~l~~adlViaaT~d~e-- 82 (202)
T PRK06718 5 MIDLSNKRVVIVGGGKVAGRRAITLLKYGAHIVVISPELTENLVKLVEEGKIRWKQKEFEPSDIVDAFLVIAATNDPR-- 82 (202)
T ss_pred EEEcCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHhCCCEEEEecCCChhhcCCceEEEEcCCCHH--
Confidence 3579999999999999999999999999999999998764331 11222 2221 1 2345788999988877443
Q ss_pred cccccHhHhccCCCceEEEEcc
Q 007512 266 SKVLNDETFGKMKKGVRIINVA 287 (600)
Q Consensus 266 ~~li~~~~l~~mk~gailvNva 287 (600)
+|......++.+ +++|++
T Consensus 83 ---lN~~i~~~a~~~-~lvn~~ 100 (202)
T PRK06718 83 ---VNEQVKEDLPEN-ALFNVI 100 (202)
T ss_pred ---HHHHHHHHHHhC-CcEEEC
Confidence 233333333444 467764
|
|
| >PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.0029 Score=65.75 Aligned_cols=79 Identities=22% Similarity=0.322 Sum_probs=65.6
Q ss_pred cceeccCCEEEEEecCh-hHHHHHHHhhc----CCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEecCCCccc
Q 007512 191 VGVSLVGKTLAVLGFGK-VGSEVARRAKG----LGMHVIAHDPYAPADRARAIGVDLVSFDEAIATADFISLHMPLTPAT 265 (600)
Q Consensus 191 ~g~~l~gktiGIIGlG~-IG~~vA~~l~~----~g~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Pl~~~t 265 (600)
.+.++.||++.|||-+. +|+.+|..|.. .++.|..++.+. .++.+.+++||+|+.+++ .
T Consensus 151 ~~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~AtVt~~hs~t------------~~l~~~~~~ADIVI~AvG----~ 214 (286)
T PRK14184 151 YGLSPAGKKAVVVGRSNIVGKPLALMLGAPGKFANATVTVCHSRT------------PDLAEECREADFLFVAIG----R 214 (286)
T ss_pred hCCCCCCCEEEEECCCccchHHHHHHHhCCcccCCCEEEEEeCCc------------hhHHHHHHhCCEEEEecC----C
Confidence 46789999999999885 69999999987 789998877542 148899999999999996 3
Q ss_pred cccccHhHhccCCCceEEEEccC
Q 007512 266 SKVLNDETFGKMKKGVRIINVAR 288 (600)
Q Consensus 266 ~~li~~~~l~~mk~gailvNvar 288 (600)
.+++..+++ |+|+++||+|-
T Consensus 215 p~li~~~~v---k~GavVIDVGi 234 (286)
T PRK14184 215 PRFVTADMV---KPGAVVVDVGI 234 (286)
T ss_pred CCcCCHHHc---CCCCEEEEeee
Confidence 456777666 99999999983
|
|
| >PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.0022 Score=57.22 Aligned_cols=63 Identities=22% Similarity=0.387 Sum_probs=49.6
Q ss_pred EEEEEecChhHHHHHHHhhcC--CCEEE-EECCCCC-h-hHHHHcCCc-ccCHHHHhc--cCCEEEEecCC
Q 007512 199 TLAVLGFGKVGSEVARRAKGL--GMHVI-AHDPYAP-A-DRARAIGVD-LVSFDEAIA--TADFISLHMPL 261 (600)
Q Consensus 199 tiGIIGlG~IG~~vA~~l~~~--g~~V~-~~d~~~~-~-~~a~~~g~~-~~~l~ell~--~aDvV~l~~Pl 261 (600)
++||||+|.+|+...+.+... ++++. ++|++.. . ..+...|+. +.+++++++ +.|+|++++|.
T Consensus 2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~I~tp~ 72 (120)
T PF01408_consen 2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEKYGIPVYTDLEELLADEDVDAVIIATPP 72 (120)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTSEEESSHHHHHHHTTESEEEEESSG
T ss_pred EEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHHhcccchhHHHHHHHhhcCCEEEEecCC
Confidence 799999999999999888755 67776 4788762 2 234566776 458999998 79999999994
|
GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A .... |
| >PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.0034 Score=65.59 Aligned_cols=81 Identities=20% Similarity=0.270 Sum_probs=65.3
Q ss_pred cceeccCCEEEEEecC-hhHHHHHHHhhcC----CCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEecCCCccc
Q 007512 191 VGVSLVGKTLAVLGFG-KVGSEVARRAKGL----GMHVIAHDPYAPADRARAIGVDLVSFDEAIATADFISLHMPLTPAT 265 (600)
Q Consensus 191 ~g~~l~gktiGIIGlG-~IG~~vA~~l~~~----g~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Pl~~~t 265 (600)
.+.++.||++.|||-+ .+|+.+|..|... +..|..+.... -++.+.+++||+|+.++..
T Consensus 155 ~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~atVtv~hs~T------------~~l~~~~~~ADIvVsAvGk---- 218 (297)
T PRK14168 155 SGVETSGAEVVVVGRSNIVGKPIANMMTQKGPGANATVTIVHTRS------------KNLARHCQRADILIVAAGV---- 218 (297)
T ss_pred hCCCCCCCEEEEECCCCcccHHHHHHHHhcccCCCCEEEEecCCC------------cCHHHHHhhCCEEEEecCC----
Confidence 4779999999999987 5799999999865 78998876442 1478889999999999972
Q ss_pred cccccHhHhccCCCceEEEEccCCc
Q 007512 266 SKVLNDETFGKMKKGVRIINVARGG 290 (600)
Q Consensus 266 ~~li~~~~l~~mk~gailvNvarg~ 290 (600)
.+++..+++ |+|+++||+|--.
T Consensus 219 p~~i~~~~i---k~gavVIDvGin~ 240 (297)
T PRK14168 219 PNLVKPEWI---KPGATVIDVGVNR 240 (297)
T ss_pred cCccCHHHc---CCCCEEEecCCCc
Confidence 346776655 8999999998544
|
|
| >cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.0033 Score=51.29 Aligned_cols=66 Identities=18% Similarity=0.382 Sum_probs=50.1
Q ss_pred EEEEecCCCCChhhHHhhhhcCCccccceEeeeecCCCcEEEEEEeC--CCC-cHHHHHHHhcCCCcceE
Q 007512 529 ILCRQVDQPGMIGTVGSILGSENVNVSFMSVGRVAPRKHAVMAIGVD--EQP-RKETLKKIGDVPAIEEF 595 (600)
Q Consensus 529 Liv~~~D~pG~Ia~V~~iL~~~~INIa~m~v~R~~~g~~al~~i~~D--~~~-~~~~l~~l~~~~~v~~v 595 (600)
|-+...|+||.++.|++.+++.|+||..++..+.. .+.+.+.+.+. +.. -..++++|+++|+|.-.
T Consensus 2 l~v~~~d~~g~L~~i~~~i~~~~~nI~~v~~~~~~-~~~~~~~~~vev~~~~~l~~i~~~L~~i~gV~~~ 70 (74)
T cd04887 2 LRLELPNRPGMLGRVTTAIGEAGGDIGAIDLVEQG-RDYTVRDITVDAPSEEHAETIVAAVRALPEVKVL 70 (74)
T ss_pred EEEEeCCCCchHHHHHHHHHHcCCcEEEEEEEEec-CCEEEEEEEEEcCCHHHHHHHHHHHhcCCCeEEE
Confidence 55778899999999999999999999999986643 45555544443 322 24789999999987643
|
The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains. |
| >PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.002 Score=68.93 Aligned_cols=90 Identities=26% Similarity=0.317 Sum_probs=61.6
Q ss_pred CEEEEEecChhHHHHHHHhhcCCCEEEEECCCCC-hhHHHHc---------CC------cc-cCHHHHhccCCEEEEecC
Q 007512 198 KTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAP-ADRARAI---------GV------DL-VSFDEAIATADFISLHMP 260 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~-~~~a~~~---------g~------~~-~~l~ell~~aDvV~l~~P 260 (600)
++|+|||.|.+|..+|..|...| .|..|.++.. .+...+. +. .. .++++.++.+|+|++++|
T Consensus 8 mkI~IiGaGa~G~alA~~La~~g-~v~l~~~~~~~~~~i~~~~~~~~~l~~~~~l~~~i~~t~d~~~a~~~aDlVilavp 86 (341)
T PRK12439 8 PKVVVLGGGSWGTTVASICARRG-PTLQWVRSAETADDINDNHRNSRYLGNDVVLSDTLRATTDFAEAANCADVVVMGVP 86 (341)
T ss_pred CeEEEECCCHHHHHHHHHHHHCC-CEEEEeCCHHHHHHHHhcCCCcccCCCCcccCCCeEEECCHHHHHhcCCEEEEEeC
Confidence 57999999999999999999888 5667765431 1111111 11 11 267788999999999999
Q ss_pred CCccccccccHhHhccCCCceEEEEccCCc
Q 007512 261 LTPATSKVLNDETFGKMKKGVRIINVARGG 290 (600)
Q Consensus 261 l~~~t~~li~~~~l~~mk~gailvNvarg~ 290 (600)
...++..+. +.-..++++..++++..|=
T Consensus 87 -s~~~~~vl~-~i~~~l~~~~~vIsl~kGi 114 (341)
T PRK12439 87 -SHGFRGVLT-ELAKELRPWVPVVSLVKGL 114 (341)
T ss_pred -HHHHHHHHH-HHHhhcCCCCEEEEEEeCC
Confidence 334454443 2333467888899988753
|
|
| >PRK08618 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.0045 Score=65.79 Aligned_cols=87 Identities=26% Similarity=0.218 Sum_probs=63.6
Q ss_pred cCCEEEEEecChhHHHHHHHhh-cCCC-EEEEECCCCCh-h-HHH----HcCCc---ccCHHHHhccCCEEEEecCCCcc
Q 007512 196 VGKTLAVLGFGKVGSEVARRAK-GLGM-HVIAHDPYAPA-D-RAR----AIGVD---LVSFDEAIATADFISLHMPLTPA 264 (600)
Q Consensus 196 ~gktiGIIGlG~IG~~vA~~l~-~~g~-~V~~~d~~~~~-~-~a~----~~g~~---~~~l~ell~~aDvV~l~~Pl~~~ 264 (600)
..++++|||.|.+|+..++.+. ..+. +|..||++... + .+. +.+++ +.++++++++||+|++|+|..
T Consensus 126 ~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~aDiVi~aT~s~-- 203 (325)
T PRK08618 126 DAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSKFNTEIYVVNSADEAIEEADIIVTVTNAK-- 203 (325)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEccCCC--
Confidence 3679999999999999988765 4464 78889987632 2 222 22443 347899999999999999954
Q ss_pred ccccccHhHhccCCCceEEEEccCC
Q 007512 265 TSKVLNDETFGKMKKGVRIINVARG 289 (600)
Q Consensus 265 t~~li~~~~l~~mk~gailvNvarg 289 (600)
.-++. +.+|+|+.++.+|.-
T Consensus 204 -~p~i~----~~l~~G~hV~~iGs~ 223 (325)
T PRK08618 204 -TPVFS----EKLKKGVHINAVGSF 223 (325)
T ss_pred -CcchH----HhcCCCcEEEecCCC
Confidence 23443 456999999999863
|
|
| >cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.0037 Score=51.48 Aligned_cols=69 Identities=12% Similarity=0.137 Sum_probs=52.1
Q ss_pred EEEEecCCCCChhhHHhhhhcCCccccceEeeeecCCCcEEEEEEeCCCC-cHHHHHHHhcCCCcceEEEeeC
Q 007512 529 ILCRQVDQPGMIGTVGSILGSENVNVSFMSVGRVAPRKHAVMAIGVDEQP-RKETLKKIGDVPAIEEFVFLKL 600 (600)
Q Consensus 529 Liv~~~D~pG~Ia~V~~iL~~~~INIa~m~v~R~~~g~~al~~i~~D~~~-~~~~l~~l~~~~~v~~v~~i~l 600 (600)
|-+...|++|+++.|++.+++.++||.+++.... +.-.+.+++.+.- =..++++|+++|+|.+|+.+++
T Consensus 3 l~I~~~dr~Gll~dI~~~i~~~~~nI~~~~~~~~---~~i~l~i~v~~~~~L~~li~~L~~i~gV~~V~R~~~ 72 (74)
T cd04877 3 LEITCEDRLGITQEVLDLLVEHNIDLRGIEIDPK---GRIYLNFPTIEFEKLQTLMPEIRRIDGVEDVKTVPY 72 (74)
T ss_pred EEEEEEccchHHHHHHHHHHHCCCceEEEEEecC---CeEEEEeEecCHHHHHHHHHHHhCCCCceEEEEeec
Confidence 5567789999999999999999999999999532 2222333333222 2478999999999999987763
|
ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence |
| >PRK13940 glutamyl-tRNA reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.0037 Score=68.60 Aligned_cols=89 Identities=16% Similarity=0.265 Sum_probs=62.3
Q ss_pred eccCCEEEEEecChhHHHHHHHhhcCCC-EEEEECCCCC--hhHHHHcC-Ccc---cCHHHHhccCCEEEEecCCCcccc
Q 007512 194 SLVGKTLAVLGFGKVGSEVARRAKGLGM-HVIAHDPYAP--ADRARAIG-VDL---VSFDEAIATADFISLHMPLTPATS 266 (600)
Q Consensus 194 ~l~gktiGIIGlG~IG~~vA~~l~~~g~-~V~~~d~~~~--~~~a~~~g-~~~---~~l~ell~~aDvV~l~~Pl~~~t~ 266 (600)
.+.|+++.|||.|.+|+.+++.|...|. +++.+++... ...+...+ ... .++.+.+.+||+|+.|++.. .
T Consensus 178 ~l~~kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt~~ra~~La~~~~~~~~~~~~~l~~~l~~aDiVI~aT~a~---~ 254 (414)
T PRK13940 178 NISSKNVLIIGAGQTGELLFRHVTALAPKQIMLANRTIEKAQKITSAFRNASAHYLSELPQLIKKADIIIAAVNVL---E 254 (414)
T ss_pred CccCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHhcCCeEecHHHHHHHhccCCEEEECcCCC---C
Confidence 4778999999999999999999998885 7899998752 22333444 332 24567789999999999843 3
Q ss_pred ccccHhHhccCCCceEEEEcc
Q 007512 267 KVLNDETFGKMKKGVRIINVA 287 (600)
Q Consensus 267 ~li~~~~l~~mk~gailvNva 287 (600)
.++..+... .+..++||.+
T Consensus 255 ~vi~~~~~~--~~~~~~iDLa 273 (414)
T PRK13940 255 YIVTCKYVG--DKPRVFIDIS 273 (414)
T ss_pred eeECHHHhC--CCCeEEEEeC
Confidence 445554432 1234566655
|
|
| >PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.0035 Score=65.52 Aligned_cols=81 Identities=17% Similarity=0.209 Sum_probs=65.3
Q ss_pred cceeccCCEEEEEecCh-hHHHHHHHhhc----CCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEecCCCccc
Q 007512 191 VGVSLVGKTLAVLGFGK-VGSEVARRAKG----LGMHVIAHDPYAPADRARAIGVDLVSFDEAIATADFISLHMPLTPAT 265 (600)
Q Consensus 191 ~g~~l~gktiGIIGlG~-IG~~vA~~l~~----~g~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Pl~~~t 265 (600)
.+.++.||++.|||-+. +|+.+|..|.. .+..|..+.... .++.+.+++||+|+.+++..
T Consensus 153 y~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~atVt~~hs~t------------~~l~~~~~~ADIvI~Avg~~--- 217 (295)
T PRK14174 153 YNIETKGKHCVVVGRSNIVGKPMANLMLQKLKESNCTVTICHSAT------------KDIPSYTRQADILIAAIGKA--- 217 (295)
T ss_pred hCCCCCCCEEEEECCCCcchHHHHHHHHhccccCCCEEEEEeCCc------------hhHHHHHHhCCEEEEecCcc---
Confidence 46789999999999875 69999999876 578888776442 14788899999999999732
Q ss_pred cccccHhHhccCCCceEEEEccCCc
Q 007512 266 SKVLNDETFGKMKKGVRIINVARGG 290 (600)
Q Consensus 266 ~~li~~~~l~~mk~gailvNvarg~ 290 (600)
+++..+++ |+|+++||+|-..
T Consensus 218 -~li~~~~v---k~GavVIDVgi~~ 238 (295)
T PRK14174 218 -RFITADMV---KPGAVVIDVGINR 238 (295)
T ss_pred -CccCHHHc---CCCCEEEEeeccc
Confidence 67888777 9999999998443
|
|
| >COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.023 Score=60.90 Aligned_cols=155 Identities=17% Similarity=0.180 Sum_probs=107.7
Q ss_pred CEEEEEecChhHHHHHHHhhcCCCEEEEECCCCCh--hHHHHcC----C-cccCHHHH---hccCCEEEEecCCCccccc
Q 007512 198 KTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPA--DRARAIG----V-DLVSFDEA---IATADFISLHMPLTPATSK 267 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~~--~~a~~~g----~-~~~~l~el---l~~aDvV~l~~Pl~~~t~~ 267 (600)
..||+||||-||+.+|......|++|.+|++..+. +..++.+ + ...+++|+ ++.=--|++.+--......
T Consensus 4 ~~iGviGLaVMG~NLaLNi~~~G~~VavyNRt~~ktd~f~~~~~~~k~i~~~~sieefV~~Le~PRkI~lMVkAG~~VD~ 83 (473)
T COG0362 4 ADIGVIGLAVMGSNLALNIADHGYTVAVYNRTTEKTDEFLAERAKGKNIVPAYSIEEFVASLEKPRKILLMVKAGTPVDA 83 (473)
T ss_pred cceeeEehhhhhHHHHHHHHhcCceEEEEeCCHHHHHHHHHhCccCCCccccCcHHHHHHHhcCCceEEEEEecCCcHHH
Confidence 46999999999999999999999999999988732 2222222 1 23467665 4556667776653321123
Q ss_pred cccHhHhccCCCceEEEEccCCccccHHHHHHhHhcCCceEEEEeccCCCCCCCCCccccCCcEEEcCCCCCCcHHHHHH
Q 007512 268 VLNDETFGKMKKGVRIINVARGGVIDEEALVRALDSGRVAQAALDVFTEEPPPADSKLVQHERVTVTPHLGASTMEAQEG 347 (600)
Q Consensus 268 li~~~~l~~mk~gailvNvarg~ivde~aL~~aL~~g~i~ga~lDv~~~EP~~~~~~L~~~~nvilTPH~~~~t~ea~~~ 347 (600)
.| +..+..|.+|=++||-|-..--|...-.++|.+..|...|.-|.+.|-- -+. -|-+ +=|-+.|+++.
T Consensus 84 ~I-~~L~p~Le~gDIiIDGGNs~y~DT~RR~~eL~~~Gi~FvG~GVSGGEeG----A~~-GPSi-----MpGG~~eay~~ 152 (473)
T COG0362 84 VI-EQLLPLLEKGDIIIDGGNSHYKDTIRRNKELSEKGILFVGMGVSGGEEG----ARH-GPSI-----MPGGQKEAYEL 152 (473)
T ss_pred HH-HHHHhhcCCCCEEEeCCCcCCchHHHHHHHHHhcCCeEEeccccccccc----ccc-CCCc-----CCCCCHHHHHH
Confidence 33 4567779999999999987777888888889988887888888988832 222 2433 33677888887
Q ss_pred HHHHHHHHHHHHHcCCC
Q 007512 348 VAIEIAEAVVGALKGEL 364 (600)
Q Consensus 348 ~~~~~~~~l~~~l~g~~ 364 (600)
+ .-+.+.|.+-..|.+
T Consensus 153 v-~pil~~IaAk~~g~p 168 (473)
T COG0362 153 V-APILTKIAAKVDGEP 168 (473)
T ss_pred H-HHHHHHHHhhcCCCC
Confidence 7 345566666555544
|
|
| >smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.0021 Score=57.99 Aligned_cols=88 Identities=19% Similarity=0.270 Sum_probs=54.5
Q ss_pred EEEEEe-cChhHHHHHHHhhcC-CCEEEEE-CCCC-ChhHHH-HcC-Cc-----ccCHHHH-hccCCEEEEecCCCcccc
Q 007512 199 TLAVLG-FGKVGSEVARRAKGL-GMHVIAH-DPYA-PADRAR-AIG-VD-----LVSFDEA-IATADFISLHMPLTPATS 266 (600)
Q Consensus 199 tiGIIG-lG~IG~~vA~~l~~~-g~~V~~~-d~~~-~~~~a~-~~g-~~-----~~~l~el-l~~aDvV~l~~Pl~~~t~ 266 (600)
++||+| .|.+|+.+++.+... ++++.+. +... ....+. ..+ +. ..+.+++ ..++|+|++|+|... +.
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvV~~~~~~~~-~~ 79 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAASARSAGKRVSEAGPHLKGEVVLELEPEDFEELAVDIVFLALPHGV-SK 79 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcCCCceEEEEEechhhcCcCHHHHCcccccccccccccCChhhcCCCEEEEcCCcHH-HH
Confidence 589999 599999999999875 7887776 4222 111111 111 11 1111122 258999999999553 33
Q ss_pred ccccHhHhccCCCceEEEEccC
Q 007512 267 KVLNDETFGKMKKGVRIINVAR 288 (600)
Q Consensus 267 ~li~~~~l~~mk~gailvNvar 288 (600)
..+. .....+++|+++||++.
T Consensus 80 ~~~~-~~~~~~~~g~~viD~s~ 100 (122)
T smart00859 80 EIAP-LLPKAAEAGVKVIDLSS 100 (122)
T ss_pred HHHH-HHHhhhcCCCEEEECCc
Confidence 3322 22445789999999973
|
The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase. |
| >TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.0026 Score=63.24 Aligned_cols=90 Identities=17% Similarity=0.128 Sum_probs=63.6
Q ss_pred eeccCCEEEEEecChhHHHHHHHhhcCCCEEEEECCCCChhH--HHHc-CCccc--C-HHHHhccCCEEEEecCCCcccc
Q 007512 193 VSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPADR--ARAI-GVDLV--S-FDEAIATADFISLHMPLTPATS 266 (600)
Q Consensus 193 ~~l~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~~~~--a~~~-g~~~~--~-l~ell~~aDvV~l~~Pl~~~t~ 266 (600)
.++.|+++.|||.|.+|..-++.|..+|.+|.+++|....+. ..+. .+.+. + -.+.+..+|+|+.++...+
T Consensus 5 l~l~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~~~~l~~l~~~~~i~~~~~~~~~~dl~~~~lVi~at~d~~--- 81 (205)
T TIGR01470 5 ANLEGRAVLVVGGGDVALRKARLLLKAGAQLRVIAEELESELTLLAEQGGITWLARCFDADILEGAFLVIAATDDEE--- 81 (205)
T ss_pred EEcCCCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHHcCCEEEEeCCCCHHHhCCcEEEEECCCCHH---
Confidence 478999999999999999999999999999999999875332 1222 33321 1 1355788999888765332
Q ss_pred ccccHhHhccCCCceEEEEcc
Q 007512 267 KVLNDETFGKMKKGVRIINVA 287 (600)
Q Consensus 267 ~li~~~~l~~mk~gailvNva 287 (600)
+|......+++-.++||+.
T Consensus 82 --ln~~i~~~a~~~~ilvn~~ 100 (205)
T TIGR01470 82 --LNRRVAHAARARGVPVNVV 100 (205)
T ss_pred --HHHHHHHHHHHcCCEEEEC
Confidence 3555555566556777763
|
This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms. |
| >CHL00100 ilvH acetohydroxyacid synthase small subunit | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.0021 Score=62.02 Aligned_cols=72 Identities=11% Similarity=0.199 Sum_probs=57.9
Q ss_pred cEEEEEecCCCCChhhHHhhhhcCCccccceEeeeecCCCcEEEEEEeCCC--CcHHHHHHHhcCCCcceEEEe
Q 007512 527 SIILCRQVDQPGMIGTVGSILGSENVNVSFMSVGRVAPRKHAVMAIGVDEQ--PRKETLKKIGDVPAIEEFVFL 598 (600)
Q Consensus 527 ~~Liv~~~D~pG~Ia~V~~iL~~~~INIa~m~v~R~~~g~~al~~i~~D~~--~~~~~l~~l~~~~~v~~v~~i 598 (600)
|.+-+.-.|+||++.+|+++|+++|+||.+++++.....+.+-|.|.++.. .-+.+.++|.++-++.+|..+
T Consensus 3 ~~isvlv~n~PGVL~RIt~lFsrRg~NIesLsv~~t~~~~~sr~TIvv~~~~~~ieqL~kQL~KLidVl~V~~~ 76 (174)
T CHL00100 3 HTLSVLVEDESGVLTRIAGLFARRGFNIESLAVGPAEQKGISRITMVVPGDDRTIEQLTKQLYKLVNILKVQDI 76 (174)
T ss_pred EEEEEEEeCcCCHHHHHHHHHHhCCCCeeEEEeeEcCCCCccEEEEEEECCHHHHHHHHHHHHHHhHhhEEEec
Confidence 677788899999999999999999999999999876666766666666553 345788888888877776653
|
|
| >PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.0048 Score=64.50 Aligned_cols=81 Identities=17% Similarity=0.269 Sum_probs=64.7
Q ss_pred cceeccCCEEEEEecCh-hHHHHHHHhhcC----CCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEecCCCccc
Q 007512 191 VGVSLVGKTLAVLGFGK-VGSEVARRAKGL----GMHVIAHDPYAPADRARAIGVDLVSFDEAIATADFISLHMPLTPAT 265 (600)
Q Consensus 191 ~g~~l~gktiGIIGlG~-IG~~vA~~l~~~----g~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Pl~~~t 265 (600)
.+.++.||++.|||-+. +|+.+|..|... ++.|..+.... -++.+..++||+|+.++-.
T Consensus 151 ~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~T------------~~l~~~~~~ADIvIsAvGk---- 214 (297)
T PRK14167 151 AGVDTEGADVVVVGRSDIVGKPMANLLIQKADGGNATVTVCHSRT------------DDLAAKTRRADIVVAAAGV---- 214 (297)
T ss_pred hCCCCCCCEEEEECCCcccHHHHHHHHhcCccCCCCEEEEeCCCC------------CCHHHHHhhCCEEEEccCC----
Confidence 46789999999999875 699999999754 78999876542 1478889999999999872
Q ss_pred cccccHhHhccCCCceEEEEccCCc
Q 007512 266 SKVLNDETFGKMKKGVRIINVARGG 290 (600)
Q Consensus 266 ~~li~~~~l~~mk~gailvNvarg~ 290 (600)
.+++..++ +|+|+++||+|--.
T Consensus 215 p~~i~~~~---ik~gaiVIDvGin~ 236 (297)
T PRK14167 215 PELIDGSM---LSEGATVIDVGINR 236 (297)
T ss_pred cCccCHHH---cCCCCEEEEccccc
Confidence 34677655 48999999998433
|
|
| >PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.003 Score=70.66 Aligned_cols=71 Identities=14% Similarity=0.242 Sum_probs=52.4
Q ss_pred ceeccCCEEEEEecChhHHHHHHHhhcCCCEEEEECCCCCh-h-HHHHcCCcccCHHHH--hccCCEEEEecCCC
Q 007512 192 GVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPA-D-RARAIGVDLVSFDEA--IATADFISLHMPLT 262 (600)
Q Consensus 192 g~~l~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~~-~-~a~~~g~~~~~l~el--l~~aDvV~l~~Pl~ 262 (600)
+..+.|++++|+|.|.+|+.++..+...|++|..+|+.... + .+...+....+++++ +.++|+|+.|+|..
T Consensus 327 ~~~~~~k~vlIiGaGgiG~aia~~L~~~G~~V~i~~R~~~~~~~la~~~~~~~~~~~~~~~l~~~DiVInatP~g 401 (477)
T PRK09310 327 NIPLNNQHVAIVGAGGAAKAIATTLARAGAELLIFNRTKAHAEALASRCQGKAFPLESLPELHRIDIIINCLPPS 401 (477)
T ss_pred CCCcCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccceechhHhcccCCCCEEEEcCCCC
Confidence 34678999999999999999999999999999999876522 1 222223223333332 57899999999965
|
|
| >TIGR02992 ectoine_eutC ectoine utilization protein EutC | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.0065 Score=64.62 Aligned_cols=85 Identities=16% Similarity=0.232 Sum_probs=62.2
Q ss_pred CCEEEEEecChhHHHHHHHhh-cCCC-EEEEECCCCCh-h-HHHH----cCCcc---cCHHHHhccCCEEEEecCCCccc
Q 007512 197 GKTLAVLGFGKVGSEVARRAK-GLGM-HVIAHDPYAPA-D-RARA----IGVDL---VSFDEAIATADFISLHMPLTPAT 265 (600)
Q Consensus 197 gktiGIIGlG~IG~~vA~~l~-~~g~-~V~~~d~~~~~-~-~a~~----~g~~~---~~l~ell~~aDvV~l~~Pl~~~t 265 (600)
.++++|||.|.+|+..++.+. .++. +|.+|+++... + .+.+ .|+.. .++++.+.+||+|+.|+|..
T Consensus 129 ~~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R~~~~a~~~a~~~~~~~g~~v~~~~~~~~av~~aDiVvtaT~s~--- 205 (326)
T TIGR02992 129 SSVVAIFGAGMQARLQLEALTLVRDIRSARIWARDSAKAEALALQLSSLLGIDVTAATDPRAAMSGADIIVTTTPSE--- 205 (326)
T ss_pred CcEEEEECCCHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhccCCEEEEecCCC---
Confidence 579999999999999999997 4674 78999987632 2 2222 24432 36889999999999999854
Q ss_pred cccccHhHhccCCCceEEEEcc
Q 007512 266 SKVLNDETFGKMKKGVRIINVA 287 (600)
Q Consensus 266 ~~li~~~~l~~mk~gailvNva 287 (600)
.-++..+. +|+|+.+..++
T Consensus 206 ~p~i~~~~---l~~g~~i~~vg 224 (326)
T TIGR02992 206 TPILHAEW---LEPGQHVTAMG 224 (326)
T ss_pred CcEecHHH---cCCCcEEEeeC
Confidence 34555443 68888777665
|
Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423). |
| >PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.0037 Score=66.22 Aligned_cols=90 Identities=18% Similarity=0.263 Sum_probs=60.7
Q ss_pred EEEEEecChhHHHHHHHhhcCCCEEEEECCCCC-hhHHHHc--------CC------cc-cCHHHHh-ccCCEEEEecCC
Q 007512 199 TLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAP-ADRARAI--------GV------DL-VSFDEAI-ATADFISLHMPL 261 (600)
Q Consensus 199 tiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~-~~~a~~~--------g~------~~-~~l~ell-~~aDvV~l~~Pl 261 (600)
+|+|||.|.+|..+|..|...|.+|..|+++.. .+...+. +. .. .++++.+ ..+|+|++++|.
T Consensus 2 kI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~Dliiiavks 81 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSKKISVNLWGRNHTTFESINTKRKNLKYLPTCHLPDNISVKSAIDEVLSDNATCIILAVPT 81 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHHcCCCcccCCCCcCCCCeEEeCCHHHHHhCCCCEEEEEeCH
Confidence 699999999999999999998999999998642 1111111 11 11 2456665 589999999993
Q ss_pred CccccccccHhHhc-cCCCceEEEEccCCc
Q 007512 262 TPATSKVLNDETFG-KMKKGVRIINVARGG 290 (600)
Q Consensus 262 ~~~t~~li~~~~l~-~mk~gailvNvarg~ 290 (600)
..+...+.. ... .++++..++.+..|-
T Consensus 82 -~~~~~~l~~-l~~~~l~~~~~vv~~~nGi 109 (326)
T PRK14620 82 -QQLRTICQQ-LQDCHLKKNTPILICSKGI 109 (326)
T ss_pred -HHHHHHHHH-HHHhcCCCCCEEEEEEcCe
Confidence 334544432 222 456777677776654
|
|
| >COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.0055 Score=66.67 Aligned_cols=93 Identities=24% Similarity=0.365 Sum_probs=67.3
Q ss_pred eccCCEEEEEecChhHHHHHHHhhcCC-CEEEEECCCCC--hhHHHHcCCcccC---HHHHhccCCEEEEecCCCccccc
Q 007512 194 SLVGKTLAVLGFGKVGSEVARRAKGLG-MHVIAHDPYAP--ADRARAIGVDLVS---FDEAIATADFISLHMPLTPATSK 267 (600)
Q Consensus 194 ~l~gktiGIIGlG~IG~~vA~~l~~~g-~~V~~~d~~~~--~~~a~~~g~~~~~---l~ell~~aDvV~l~~Pl~~~t~~ 267 (600)
.|.++++.|||.|-||.-+|+.|...| .+|+..++... .+.+.+.|....+ +.+.+.++|+|+.++.. ...
T Consensus 175 ~L~~~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~erA~~La~~~~~~~~~l~el~~~l~~~DvVissTsa---~~~ 251 (414)
T COG0373 175 SLKDKKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLERAEELAKKLGAEAVALEELLEALAEADVVISSTSA---PHP 251 (414)
T ss_pred ccccCeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhCCeeecHHHHHHhhhhCCEEEEecCC---Ccc
Confidence 389999999999999999999999998 57888887763 3447778876654 45678999999999652 244
Q ss_pred cccHhHhccC---CCceEEEEccCC
Q 007512 268 VLNDETFGKM---KKGVRIINVARG 289 (600)
Q Consensus 268 li~~~~l~~m---k~gailvNvarg 289 (600)
++....+... ++.-++||.+=.
T Consensus 252 ii~~~~ve~a~~~r~~~livDiavP 276 (414)
T COG0373 252 IITREMVERALKIRKRLLIVDIAVP 276 (414)
T ss_pred ccCHHHHHHHHhcccCeEEEEecCC
Confidence 5555544332 222577777643
|
|
| >TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2 | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.0027 Score=62.79 Aligned_cols=91 Identities=24% Similarity=0.307 Sum_probs=60.7
Q ss_pred eeccCCEEEEEecChhHHHHHHHhhcCCC-EEEEECCCC-C---hhH----HHHcC-----------------Ccc----
Q 007512 193 VSLVGKTLAVLGFGKVGSEVARRAKGLGM-HVIAHDPYA-P---ADR----ARAIG-----------------VDL---- 242 (600)
Q Consensus 193 ~~l~gktiGIIGlG~IG~~vA~~l~~~g~-~V~~~d~~~-~---~~~----a~~~g-----------------~~~---- 242 (600)
..|..++|+|+|+|.+|+.+|..|...|. ++..+|+.. . ..+ ..+.| ++.
T Consensus 17 ~~L~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~~iG~~Ka~~~~~~l~~inp~~~i~~~~ 96 (200)
T TIGR02354 17 QKLEQATVAICGLGGLGSNVAINLARAGIGKLILVDFDVVEPSNLNRQQYKASQVGEPKTEALKENISEINPYTEIEAYD 96 (200)
T ss_pred HHHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCEEcccccccccCChhhCCCHHHHHHHHHHHHHCCCCEEEEee
Confidence 46889999999999999999999998898 799998761 0 000 01111 000
Q ss_pred -----cCHHHHhccCCEEEEecCCCccccccccHhHhccCCCceEEE
Q 007512 243 -----VSFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRII 284 (600)
Q Consensus 243 -----~~l~ell~~aDvV~l~~Pl~~~t~~li~~~~l~~mk~gailv 284 (600)
.++++++.++|+|+-| ..+.+++.++.......++...++.
T Consensus 97 ~~i~~~~~~~~~~~~DlVi~a-~Dn~~~k~~l~~~~~~~~~~~~ii~ 142 (200)
T TIGR02354 97 EKITEENIDKFFKDADIVCEA-FDNAEAKAMLVNAVLEKYKDKYLIA 142 (200)
T ss_pred eeCCHhHHHHHhcCCCEEEEC-CCCHHHHHHHHHHHHHHcCCCcEEE
Confidence 1234566777777777 4566677777666666666555555
|
Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter. |
| >COG4747 ACT domain-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.0095 Score=53.15 Aligned_cols=105 Identities=16% Similarity=0.296 Sum_probs=72.8
Q ss_pred hhhccHHHHHhhcCceEEEEEeecCCCCCCCCceEEEEEeecccccccccCCCcEEEEEEEEeCCceEEEEEcceEEEee
Q 007512 444 VNLVNADYTAKQRGLRLTEERILLDGSPESPLEFIQVQIANVESKFASAISESGEIKVEGRVKDGVPHLTKVGSFEVDVS 523 (600)
Q Consensus 444 vn~vnA~~~A~e~GI~v~~~~~~~~~~~~~~~n~i~v~~~~~~~~~~~~~~~~~~~~v~Gsv~gG~~~I~~Idgf~v~~~ 523 (600)
-++.++....++.||++.--..... ++| .-++..+. ++..|.+.-... ||-|..
T Consensus 15 GRL~~~~~~L~eagINiRA~tiAdt---~dF-GIiRmvV~--~~d~A~~~Lee~-------------------gF~Vr~- 68 (142)
T COG4747 15 GRLASVANKLKEAGINIRAFTIADT---GDF-GIIRMVVD--RPDEAHSVLEEA-------------------GFTVRE- 68 (142)
T ss_pred chHHHHHHHHHHcCCceEEEEeccc---cCc-ceEEEEcC--ChHHHHHHHHHC-------------------CcEEEe-
Confidence 4677888888999999876544322 245 45565553 344444333222 222222
Q ss_pred cCccEEEEEecCCCCChhhHHhhhhcCCccccceEeeeecCCCcEEEEEEeCCC
Q 007512 524 LEGSIILCRQVDQPGMIGTVGSILGSENVNVSFMSVGRVAPRKHAVMAIGVDEQ 577 (600)
Q Consensus 524 g~~~~Liv~~~D~pG~Ia~V~~iL~~~~INIa~m~v~R~~~g~~al~~i~~D~~ 577 (600)
...+-+...|+||-+.+|...|++++||+-++.-+-.++ +.|++++.+++-
T Consensus 69 --~dVlaVEmeD~PG~l~~I~~vl~d~diNldYiYAFv~ek-~KAlli~r~ed~ 119 (142)
T COG4747 69 --TDVLAVEMEDVPGGLSRIAEVLGDADINLDYIYAFVTEK-QKALLIVRVEDI 119 (142)
T ss_pred --eeEEEEEecCCCCcHHHHHHHHhhcCcCceeeeeeeecC-ceEEEEEEhhHH
Confidence 245668899999999999999999999999998886555 889999997654
|
|
| >TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)) | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.0051 Score=65.81 Aligned_cols=89 Identities=20% Similarity=0.234 Sum_probs=61.8
Q ss_pred EEEEEecChhHHHHHHHhhcCC--------CEEEEECCCC---ChhHHHH-----------cCC------cc-cCHHHHh
Q 007512 199 TLAVLGFGKVGSEVARRAKGLG--------MHVIAHDPYA---PADRARA-----------IGV------DL-VSFDEAI 249 (600)
Q Consensus 199 tiGIIGlG~IG~~vA~~l~~~g--------~~V~~~d~~~---~~~~a~~-----------~g~------~~-~~l~ell 249 (600)
+|+|||.|..|.++|..+...| .+|..|.+.. ..+.... .|+ .. .++++++
T Consensus 1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~at~dl~eal 80 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVAVPDLVEAA 80 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEEECCHHHHH
Confidence 5899999999999999997655 8999987621 1111100 022 11 3788999
Q ss_pred ccCCEEEEecCCCccccccccHhHhccCCCceEEEEccCC
Q 007512 250 ATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARG 289 (600)
Q Consensus 250 ~~aDvV~l~~Pl~~~t~~li~~~~l~~mk~gailvNvarg 289 (600)
++||+|++++| ....+.++ .+.-..++++..+|+++.|
T Consensus 81 ~~ADiIIlAVP-s~~i~~vl-~~l~~~l~~~~~iVs~tKG 118 (342)
T TIGR03376 81 KGADILVFVIP-HQFLEGIC-KQLKGHVKPNARAISCIKG 118 (342)
T ss_pred hcCCEEEEECC-hHHHHHHH-HHHHhhcCCCCEEEEEeCC
Confidence 99999999999 33344443 2333357888999999976
|
Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria. |
| >COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.0042 Score=65.44 Aligned_cols=91 Identities=23% Similarity=0.305 Sum_probs=65.1
Q ss_pred CEEEEEecChhHHHHHHHhhcCCCEEEEECCCCChhH-HHH-------c-CC------c-ccCHHHHhccCCEEEEecCC
Q 007512 198 KTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPADR-ARA-------I-GV------D-LVSFDEAIATADFISLHMPL 261 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~~~~-a~~-------~-g~------~-~~~l~ell~~aDvV~l~~Pl 261 (600)
++|+|||.|.-|.++|..|...|.+|..|.++..... -.. + |+ . ..+++++++.||+|++.+|
T Consensus 2 ~kI~ViGaGswGTALA~~la~ng~~V~lw~r~~~~~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~~~ad~iv~avP- 80 (329)
T COG0240 2 MKIAVIGAGSWGTALAKVLARNGHEVRLWGRDEEIVAEINETRENPKYLPGILLPPNLKATTDLAEALDGADIIVIAVP- 80 (329)
T ss_pred ceEEEEcCChHHHHHHHHHHhcCCeeEEEecCHHHHHHHHhcCcCccccCCccCCcccccccCHHHHHhcCCEEEEECC-
Confidence 5899999999999999999988888888766431110 000 0 22 1 2379999999999999999
Q ss_pred CccccccccHhHhccCCCceEEEEccCCc
Q 007512 262 TPATSKVLNDETFGKMKKGVRIINVARGG 290 (600)
Q Consensus 262 ~~~t~~li~~~~l~~mk~gailvNvarg~ 290 (600)
..-.+..+..- -..+++++.+|+++.|=
T Consensus 81 s~~~r~v~~~l-~~~l~~~~~iv~~sKGi 108 (329)
T COG0240 81 SQALREVLRQL-KPLLLKDAIIVSATKGL 108 (329)
T ss_pred hHHHHHHHHHH-hhhccCCCeEEEEeccc
Confidence 43344444332 24578999999999753
|
|
| >PRK14031 glutamate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.008 Score=66.18 Aligned_cols=108 Identities=23% Similarity=0.295 Sum_probs=71.0
Q ss_pred ceeccCCEEEEEecChhHHHHHHHhhcCCCEEEEE-C-------CCC-ChhHH------------------HHcCCcccC
Q 007512 192 GVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAH-D-------PYA-PADRA------------------RAIGVDLVS 244 (600)
Q Consensus 192 g~~l~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~-d-------~~~-~~~~a------------------~~~g~~~~~ 244 (600)
|.+|.|+|+.|.|+|++|+..|+.|..+|++|++. | +.- +.+.. ...+....+
T Consensus 223 g~~l~g~rVaVQGfGNVG~~aA~~L~e~GAkVVaVSD~~G~iy~~~Gld~~~l~~~~~~k~~~~~~v~~~~~~~ga~~i~ 302 (444)
T PRK14031 223 GTDLKGKVCLVSGSGNVAQYTAEKVLELGGKVVTMSDSDGYIYDPDGIDREKLDYIMELKNLYRGRIREYAEKYGCKYVE 302 (444)
T ss_pred CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCeEECCCCCCHHHHHHHHHHHhhcCCchhhhHhhcCCEEcC
Confidence 56899999999999999999999999999999983 3 221 11110 011333344
Q ss_pred HHHHh-ccCCEEEEecCCCccccccccHhHhccCCC-ceEEEEc-cCCccccHHHHHHhHhcCCc
Q 007512 245 FDEAI-ATADFISLHMPLTPATSKVLNDETFGKMKK-GVRIINV-ARGGVIDEEALVRALDSGRV 306 (600)
Q Consensus 245 l~ell-~~aDvV~l~~Pl~~~t~~li~~~~l~~mk~-gailvNv-arg~ivde~aL~~aL~~g~i 306 (600)
-++++ ..||+++-|. +.+.|+.+...+++. |+.+|-- |.+ .+..++.. .|.+..|
T Consensus 303 ~d~~~~~~cDIliPaA-----l~n~I~~~na~~l~a~g~~~V~EgAN~-P~t~eA~~-~L~~rgI 360 (444)
T PRK14031 303 GARPWGEKGDIALPSA-----TQNELNGDDARQLVANGVIAVSEGANM-PSTPEAIK-VFQDAKI 360 (444)
T ss_pred CcccccCCCcEEeecc-----cccccCHHHHHHHHhcCCeEEECCCCC-CCCHHHHH-HHHHCCc
Confidence 45543 4699998776 466788888888764 5655555 456 55555543 3444433
|
|
| >PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.0069 Score=65.39 Aligned_cols=92 Identities=22% Similarity=0.276 Sum_probs=61.6
Q ss_pred CCEEEEEecChhHHHHHHHhhcCC-------CEEEEECCCCC------hhHHHHc--------CC------c-ccCHHHH
Q 007512 197 GKTLAVLGFGKVGSEVARRAKGLG-------MHVIAHDPYAP------ADRARAI--------GV------D-LVSFDEA 248 (600)
Q Consensus 197 gktiGIIGlG~IG~~vA~~l~~~g-------~~V~~~d~~~~------~~~a~~~--------g~------~-~~~l~el 248 (600)
-++|+|||.|..|.++|..+...| .+|..|.++.. .+.-.+. |+ . ..+++++
T Consensus 11 ~~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~~~Lp~ni~~tsdl~ea 90 (365)
T PTZ00345 11 PLKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYLPGIKLPDNIVAVSDLKEA 90 (365)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhcCCCcccCCCCcCCCceEEecCHHHH
Confidence 458999999999999999997544 78877755432 1111111 12 1 1368889
Q ss_pred hccCCEEEEecCCCccccccccHhHhc--cCCCceEEEEccCCc
Q 007512 249 IATADFISLHMPLTPATSKVLNDETFG--KMKKGVRIINVARGG 290 (600)
Q Consensus 249 l~~aDvV~l~~Pl~~~t~~li~~~~l~--~mk~gailvNvarg~ 290 (600)
++.||+|++++| ....+.++.+ .-. .+++++++|+++.|=
T Consensus 91 v~~aDiIvlAVP-sq~l~~vl~~-l~~~~~l~~~~~iIS~aKGI 132 (365)
T PTZ00345 91 VEDADLLIFVIP-HQFLESVLSQ-IKENNNLKKHARAISLTKGI 132 (365)
T ss_pred HhcCCEEEEEcC-hHHHHHHHHH-hccccccCCCCEEEEEeCCc
Confidence 999999999999 3334444422 222 356788999998763
|
|
| >cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.0054 Score=51.02 Aligned_cols=61 Identities=13% Similarity=0.189 Sum_probs=44.1
Q ss_pred EEEEecCCCCChhhHHhhhhcCCccccceEeeeec----CCCcEEEEEEeCCCCc---HHHHHHHhcC
Q 007512 529 ILCRQVDQPGMIGTVGSILGSENVNVSFMSVGRVA----PRKHAVMAIGVDEQPR---KETLKKIGDV 589 (600)
Q Consensus 529 Liv~~~D~pG~Ia~V~~iL~~~~INIa~m~v~R~~----~g~~al~~i~~D~~~~---~~~l~~l~~~ 589 (600)
+.+.-+|+||.+++|++.|+++|+||..++..... ..+.-.|.++++-+.. .++.++++.+
T Consensus 2 l~v~g~D~~Giv~~it~~l~~~~~nI~~~~~~~~~~~~~~~~~~~~~~~v~~p~~~~~~~l~~~l~~l 69 (81)
T cd04869 2 VEVVGNDRPGIVHEVTQFLAQRNINIEDLSTETYSAPMSGTPLFKAQATLALPAGTDLDALREELEEL 69 (81)
T ss_pred EEEEeCCCCCHHHHHHHHHHHcCCCeEEeEeeeecCCCCCcceEEEEEEEecCCCCCHHHHHHHHHHH
Confidence 45667899999999999999999999999997654 2244566777665532 2444445443
|
This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in |
| >PRK06046 alanine dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.008 Score=63.94 Aligned_cols=86 Identities=19% Similarity=0.319 Sum_probs=61.7
Q ss_pred CCEEEEEecChhHHHHHHHhhc-CCC-EEEEECCCCCh-hH-HHH----cCCc---ccCHHHHhccCCEEEEecCCCccc
Q 007512 197 GKTLAVLGFGKVGSEVARRAKG-LGM-HVIAHDPYAPA-DR-ARA----IGVD---LVSFDEAIATADFISLHMPLTPAT 265 (600)
Q Consensus 197 gktiGIIGlG~IG~~vA~~l~~-~g~-~V~~~d~~~~~-~~-a~~----~g~~---~~~l~ell~~aDvV~l~~Pl~~~t 265 (600)
-+++||||.|.+|+..++.+.. .+. +|.+||++... +. +.+ .++. ..++++++. +|+|++|+|..
T Consensus 129 ~~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~-aDiVv~aTps~--- 204 (326)
T PRK06046 129 SKVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRTKSSAEKFVERMSSVVGCDVTVAEDIEEACD-CDILVTTTPSR--- 204 (326)
T ss_pred CCEEEEECCcHHHHHHHHHHHhhCCceEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhh-CCEEEEecCCC---
Confidence 4689999999999999998874 455 56779988632 22 222 2432 237888887 99999999954
Q ss_pred cccccHhHhccCCCceEEEEccCC
Q 007512 266 SKVLNDETFGKMKKGVRIINVARG 289 (600)
Q Consensus 266 ~~li~~~~l~~mk~gailvNvarg 289 (600)
.-++..+. +|+|+.|..+|.-
T Consensus 205 ~P~~~~~~---l~~g~hV~~iGs~ 225 (326)
T PRK06046 205 KPVVKAEW---IKEGTHINAIGAD 225 (326)
T ss_pred CcEecHHH---cCCCCEEEecCCC
Confidence 35565543 5899998888853
|
|
| >PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline [] | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.0053 Score=64.93 Aligned_cols=90 Identities=28% Similarity=0.279 Sum_probs=54.8
Q ss_pred CEEEEEecChhHHHHHHHhhc-CC-CEEEEECCCCC-hh-HH---HHcCCc---ccCHHHHhccCCEEEEecCCCccccc
Q 007512 198 KTLAVLGFGKVGSEVARRAKG-LG-MHVIAHDPYAP-AD-RA---RAIGVD---LVSFDEAIATADFISLHMPLTPATSK 267 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~-~g-~~V~~~d~~~~-~~-~a---~~~g~~---~~~l~ell~~aDvV~l~~Pl~~~t~~ 267 (600)
+++||||.|..|+.-++.+.. ++ -+|.+|+++.. .+ .+ ...++. ..+.++++++||+|+.|+|.+..+ -
T Consensus 129 ~~l~viGaG~QA~~~~~a~~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~v~~~~~~~~av~~aDii~taT~s~~~~-P 207 (313)
T PF02423_consen 129 RTLGVIGAGVQARWHLRALAAVRPIKEVRVYSRSPERAEAFAARLRDLGVPVVAVDSAEEAVRGADIIVTATPSTTPA-P 207 (313)
T ss_dssp -EEEEE--SHHHHHHHHHHHHHS--SEEEEE-SSHHHHHHHHHHHHCCCTCEEEESSHHHHHTTSSEEEE----SSEE-E
T ss_pred ceEEEECCCHHHHHHHHHHHHhCCceEEEEEccChhHHHHHHHhhccccccceeccchhhhcccCCEEEEccCCCCCC-c
Confidence 589999999999999998873 55 48999999862 21 11 122443 237999999999999999865432 5
Q ss_pred cccHhHhccCCCceEEEEccCCcc
Q 007512 268 VLNDETFGKMKKGVRIINVARGGV 291 (600)
Q Consensus 268 li~~~~l~~mk~gailvNvarg~i 291 (600)
+++.+ .+|||+.|+.+|....
T Consensus 208 ~~~~~---~l~~g~hi~~iGs~~~ 228 (313)
T PF02423_consen 208 VFDAE---WLKPGTHINAIGSYTP 228 (313)
T ss_dssp SB-GG---GS-TT-EEEE-S-SST
T ss_pred cccHH---HcCCCcEEEEecCCCC
Confidence 56554 4689999999986433
|
The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A. |
| >PRK06719 precorrin-2 dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.0054 Score=58.36 Aligned_cols=68 Identities=21% Similarity=0.271 Sum_probs=50.0
Q ss_pred ceeccCCEEEEEecChhHHHHHHHhhcCCCEEEEECCCCChhHHHHcC-Cccc--CH-HHHhccCCEEEEecC
Q 007512 192 GVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPADRARAIG-VDLV--SF-DEAIATADFISLHMP 260 (600)
Q Consensus 192 g~~l~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~~~~a~~~g-~~~~--~l-~ell~~aDvV~l~~P 260 (600)
...|.|+++.|||-|.+|...++.|...|.+|.+++|....+.. +++ +.+. .+ ++-+.++|+|+.++.
T Consensus 8 ~l~l~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp~~~~~l~-~l~~i~~~~~~~~~~dl~~a~lViaaT~ 79 (157)
T PRK06719 8 MFNLHNKVVVIIGGGKIAYRKASGLKDTGAFVTVVSPEICKEMK-ELPYITWKQKTFSNDDIKDAHLIYAATN 79 (157)
T ss_pred EEEcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCccCHHHH-hccCcEEEecccChhcCCCceEEEECCC
Confidence 46899999999999999999999999999999999887644332 232 2111 11 234677888877765
|
|
| >PTZ00117 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.0098 Score=63.10 Aligned_cols=93 Identities=20% Similarity=0.274 Sum_probs=59.7
Q ss_pred ccCCEEEEEecChhHHHHHHHhhcCC-CEEEEECCCCChhHHHHc---------CC----cc-cCHHHHhccCCEEEEec
Q 007512 195 LVGKTLAVLGFGKVGSEVARRAKGLG-MHVIAHDPYAPADRARAI---------GV----DL-VSFDEAIATADFISLHM 259 (600)
Q Consensus 195 l~gktiGIIGlG~IG~~vA~~l~~~g-~~V~~~d~~~~~~~a~~~---------g~----~~-~~l~ell~~aDvV~l~~ 259 (600)
+..++|+|||.|.+|..+|..+...| .++..||.+.....+..+ +. .. .+++ .+++||+|+++.
T Consensus 3 ~~~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i~~~~d~~-~l~~ADiVVita 81 (319)
T PTZ00117 3 VKRKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIKGVPQGKALDLKHFSTLVGSNINILGTNNYE-DIKDSDVVVITA 81 (319)
T ss_pred CCCcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCCccchhHHHHHhhhccccCCCeEEEeCCCHH-HhCCCCEEEECC
Confidence 35679999999999999999988667 689999987532212111 11 11 2455 779999999999
Q ss_pred --CCCc-ccc--------cccc--HhHhccCCCceEEEEccC
Q 007512 260 --PLTP-ATS--------KVLN--DETFGKMKKGVRIINVAR 288 (600)
Q Consensus 260 --Pl~~-~t~--------~li~--~~~l~~mk~gailvNvar 288 (600)
|..+ .++ .++. .+.+....|.+++++++-
T Consensus 82 g~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~p~a~vivvsN 123 (319)
T PTZ00117 82 GVQRKEEMTREDLLTINGKIMKSVAESVKKYCPNAFVICVTN 123 (319)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 4333 111 1110 112333457888888853
|
|
| >cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.0051 Score=50.56 Aligned_cols=49 Identities=14% Similarity=0.165 Sum_probs=39.5
Q ss_pred EEEEecCCCCChhhHHhhhhcCCccccceEeeeecCCCcEEEEEEeCCC
Q 007512 529 ILCRQVDQPGMIGTVGSILGSENVNVSFMSVGRVAPRKHAVMAIGVDEQ 577 (600)
Q Consensus 529 Liv~~~D~pG~Ia~V~~iL~~~~INIa~m~v~R~~~g~~al~~i~~D~~ 577 (600)
+-+.-+|+||.++.|++.|+++|+||..++......++.-.|.++++-+
T Consensus 2 i~v~g~D~~Giv~~it~~l~~~g~nI~~~~~~~~~~~~~f~~~~~~~~~ 50 (74)
T cd04875 2 LTLSCPDRPGIVAAVSGFLAEHGGNIVESDQFVDPDSGRFFMRVEFELE 50 (74)
T ss_pred EEEEcCCCCCHHHHHHHHHHHcCCCEEeeeeeecCCCCeEEEEEEEEeC
Confidence 4566799999999999999999999999998864455555666666655
|
This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains. |
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.0068 Score=64.39 Aligned_cols=45 Identities=36% Similarity=0.513 Sum_probs=39.7
Q ss_pred CCEEEEEecChhHHHHHHHhhcCCCEEEEECCCC-ChhHHHHcCCc
Q 007512 197 GKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYA-PADRARAIGVD 241 (600)
Q Consensus 197 gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~-~~~~a~~~g~~ 241 (600)
|++|+|+|+|-.|..-.+.++++|++|+++|+.. ..+.++++|..
T Consensus 167 G~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGAd 212 (339)
T COG1064 167 GKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGAD 212 (339)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCCc
Confidence 8999999999999999999999999999999987 45667777753
|
|
| >PRK12549 shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.0068 Score=63.24 Aligned_cols=69 Identities=22% Similarity=0.233 Sum_probs=50.8
Q ss_pred eccCCEEEEEecChhHHHHHHHhhcCCC-EEEEECCCCChh--HHHHcC-----Ccc---cCHHHHhccCCEEEEecCCC
Q 007512 194 SLVGKTLAVLGFGKVGSEVARRAKGLGM-HVIAHDPYAPAD--RARAIG-----VDL---VSFDEAIATADFISLHMPLT 262 (600)
Q Consensus 194 ~l~gktiGIIGlG~IG~~vA~~l~~~g~-~V~~~d~~~~~~--~a~~~g-----~~~---~~l~ell~~aDvV~l~~Pl~ 262 (600)
.+.++++.|+|.|..|++++..|...|+ +|..+|+..... .+...+ ... .++.+.+.++|+|+.|+|..
T Consensus 124 ~~~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~~ka~~la~~l~~~~~~~~~~~~~~~~~~~~~aDiVInaTp~G 203 (284)
T PRK12549 124 DASLERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDPARAAALADELNARFPAARATAGSDLAAALAAADGLVHATPTG 203 (284)
T ss_pred CccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhCCCeEEEeccchHhhhCCCCEEEECCcCC
Confidence 4567999999999999999999999997 799999875321 222211 111 23455778899999999954
|
|
| >PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.03 Score=59.27 Aligned_cols=104 Identities=16% Similarity=0.101 Sum_probs=70.5
Q ss_pred hHHHHHHHhhcCCCEEEEECCCCCh--------hH-----------HHHcC-------------Cccc-C--HHHHhccC
Q 007512 208 VGSEVARRAKGLGMHVIAHDPYAPA--------DR-----------ARAIG-------------VDLV-S--FDEAIATA 252 (600)
Q Consensus 208 IG~~vA~~l~~~g~~V~~~d~~~~~--------~~-----------a~~~g-------------~~~~-~--l~ell~~a 252 (600)
||..+|..+...|++|..||++... +. ..+.| +..+ + +.+.+++|
T Consensus 1 MG~giA~~~a~~G~~V~l~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~a~~~a 80 (314)
T PRK08269 1 MGQGIALAFAFAGHDVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADAVLARIAVVARDGAADALADA 80 (314)
T ss_pred CcHHHHHHHHhCCCeEEEEeCCcccchhhHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEeecCcchHHHhccC
Confidence 6889999999889999999988721 11 11112 1122 2 55788999
Q ss_pred CEEEEecCCCccccccccHhHhccCCCceEEEEccCCccccHHHHHHhHhc-CCceEEEEeccC
Q 007512 253 DFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVIDEEALVRALDS-GRVAQAALDVFT 315 (600)
Q Consensus 253 DvV~l~~Pl~~~t~~li~~~~l~~mk~gailvNvarg~ivde~aL~~aL~~-g~i~ga~lDv~~ 315 (600)
|+|+-++|-..+.+.-+-.+..+.++++++|....++ +....|.+.++. .++ .+++.|.
T Consensus 81 D~ViEav~E~~~~K~~~f~~l~~~~~~~~ilaSntS~--~~~~~la~~~~~p~r~--~g~Hf~~ 140 (314)
T PRK08269 81 DLVFEAVPEVLDAKREALRWLGRHVDADAIIASTTST--FLVTDLQRHVAHPERF--LNAHWLN 140 (314)
T ss_pred CEEEECCcCCHHHHHHHHHHHHhhCCCCcEEEEcccc--CCHHHHHhhcCCcccE--EEEecCC
Confidence 9999999998888877767777789999999554443 345666655532 344 4444443
|
|
| >TIGR00670 asp_carb_tr aspartate carbamoyltransferase | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.054 Score=57.03 Aligned_cols=93 Identities=25% Similarity=0.321 Sum_probs=63.7
Q ss_pred eccCCEEEEEecC---hhHHHHHHHhhcCCCEEEEECCCC---Ch---hHHHHcCCc---ccCHHHHhccCCEEEEecCC
Q 007512 194 SLVGKTLAVLGFG---KVGSEVARRAKGLGMHVIAHDPYA---PA---DRARAIGVD---LVSFDEAIATADFISLHMPL 261 (600)
Q Consensus 194 ~l~gktiGIIGlG---~IG~~vA~~l~~~g~~V~~~d~~~---~~---~~a~~~g~~---~~~l~ell~~aDvV~l~~Pl 261 (600)
.+.|++|+++|-| ++..+++..+..+|++|....|.. +. +.+++.|.. ..++++.++.||+|..-. .
T Consensus 147 ~l~g~~va~vGD~~~~~v~~Sl~~~~a~~g~~v~~~~P~~~~~~~~~~~~~~~~G~~v~~~~d~~~a~~~aDvvyt~~-~ 225 (301)
T TIGR00670 147 RLDGLKIALVGDLKYGRTVHSLAEALTRFGVEVYLISPEELRMPKEILEELKAKGIKVRETESLEEVIDEADVLYVTR-I 225 (301)
T ss_pred CCCCCEEEEEccCCCCcHHHHHHHHHHHcCCEEEEECCccccCCHHHHHHHHHcCCEEEEECCHHHHhCCCCEEEECC-c
Confidence 4789999999995 999999999999999999987754 21 233445654 248999999999997732 1
Q ss_pred Ccc------------ccccccHhHhccCCCceEEEEcc
Q 007512 262 TPA------------TSKVLNDETFGKMKKGVRIINVA 287 (600)
Q Consensus 262 ~~~------------t~~li~~~~l~~mk~gailvNva 287 (600)
..+ ...-++++.++.+|+++++.-|.
T Consensus 226 ~~er~~~~~~~~~~~~~y~v~~ell~~a~~~ai~mHcl 263 (301)
T TIGR00670 226 QKERFPDPEEYEKYKGSYGITLERLEAAKKGVIIMHPL 263 (301)
T ss_pred cccccCCHHHHHHHhcCCeECHHHHhhcCCCCEEECCC
Confidence 100 01223555555566666666554
|
Ornithine carbamoyltransferases are in the same superfamily and form an outgroup. |
| >PRK00779 ornithine carbamoyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.051 Score=57.28 Aligned_cols=127 Identities=21% Similarity=0.214 Sum_probs=80.7
Q ss_pred HHhCCceeecCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCccccccccceeccCCEEEEEec-ChhHHHHHHHhhc
Q 007512 140 ATEFGCLVVNAPTANTVAAAEHGIALLAAMARNVAQADASVKAGKWQRNKYVGVSLVGKTLAVLGF-GKVGSEVARRAKG 218 (600)
Q Consensus 140 a~~~GI~V~n~p~~~~~~vAE~~l~lll~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktiGIIGl-G~IG~~vA~~l~~ 218 (600)
+...+++|+|+.+...-++ .+++=++.+.++ .| .+.|.+|+++|= +++.++++..+..
T Consensus 116 a~~~~vPVINag~~~~HPt--QaL~Dl~Ti~e~------------------~g-~l~gl~i~~vGd~~~v~~Sl~~~l~~ 174 (304)
T PRK00779 116 AEYSTVPVINGLTDLSHPC--QILADLLTIYEH------------------RG-SLKGLKVAWVGDGNNVANSLLLAAAL 174 (304)
T ss_pred HHhCCCCEEeCCCCCCChH--HHHHHHHHHHHH------------------hC-CcCCcEEEEEeCCCccHHHHHHHHHH
Confidence 4445689999976443333 233333333321 12 367899999998 7899999999999
Q ss_pred CCCEEEEECCCC--Ch-hH----HHHcCCc---ccCHHHHhccCCEEEEec----CCCc---c-----ccccccHhHhcc
Q 007512 219 LGMHVIAHDPYA--PA-DR----ARAIGVD---LVSFDEAIATADFISLHM----PLTP---A-----TSKVLNDETFGK 276 (600)
Q Consensus 219 ~g~~V~~~d~~~--~~-~~----a~~~g~~---~~~l~ell~~aDvV~l~~----Pl~~---~-----t~~li~~~~l~~ 276 (600)
+|++|....|.. .. +. +++.|.. ..++++.+++||+|..-. +... + -..-++++.++.
T Consensus 175 ~g~~v~~~~P~~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvy~~~w~~~~~~~~~~~~~~~~~~y~v~~~~l~~ 254 (304)
T PRK00779 175 LGFDLRVATPKGYEPDPEIVEKIAKETGASIEVTHDPKEAVKGADVVYTDVWVSMGQEAEAEERLKAFAPYQVNEELMAL 254 (304)
T ss_pred cCCEEEEECCcccCCCHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEecCccccccchhHHHHHHHhcccCCCHHHHHh
Confidence 999999988754 21 11 3445643 248999999999998741 1100 0 123345566666
Q ss_pred CCCceEEEEcc
Q 007512 277 MKKGVRIINVA 287 (600)
Q Consensus 277 mk~gailvNva 287 (600)
+|++++|.-|.
T Consensus 255 ~~~~~ivmHpl 265 (304)
T PRK00779 255 AKPDAIFMHCL 265 (304)
T ss_pred cCCCeEEecCC
Confidence 66666666664
|
|
| >cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.0077 Score=48.50 Aligned_cols=62 Identities=18% Similarity=0.337 Sum_probs=46.0
Q ss_pred cEEEEEecCCCCChhhHHhhhhcCCccccceEeeeecCCCcEEEEEEeCCC-CcHHHHHHHhc
Q 007512 527 SIILCRQVDQPGMIGTVGSILGSENVNVSFMSVGRVAPRKHAVMAIGVDEQ-PRKETLKKIGD 588 (600)
Q Consensus 527 ~~Liv~~~D~pG~Ia~V~~iL~~~~INIa~m~v~R~~~g~~al~~i~~D~~-~~~~~l~~l~~ 588 (600)
+.+-+..+|+||.++.++++|+++|+||.++...+...+..+.+.+.++.+ -.+.+.+.|++
T Consensus 2 ~~~~v~~~d~~G~L~~l~~~l~~~~i~i~~~~~~~~~~~~~~~~~i~v~~~~~~~~~~~~L~~ 64 (69)
T cd04909 2 YDLYVDVPDEPGVIAEVTQILGDAGISIKNIEILEIREGIGGILRISFKTQEDRERAKEILKE 64 (69)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHcCCCceeeEeEEeecCCcEEEEEEECCHHHHHHHHHHHHH
Confidence 456778899999999999999999999999988775433356666776532 23456666654
|
The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains. |
| >PRK01713 ornithine carbamoyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.045 Score=58.48 Aligned_cols=128 Identities=20% Similarity=0.230 Sum_probs=81.0
Q ss_pred HHhCCceeecCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCccccccccceeccCCEEEEEecC--hhHHHHHHHhh
Q 007512 140 ATEFGCLVVNAPTANTVAAAEHGIALLAAMARNVAQADASVKAGKWQRNKYVGVSLVGKTLAVLGFG--KVGSEVARRAK 217 (600)
Q Consensus 140 a~~~GI~V~n~p~~~~~~vAE~~l~lll~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktiGIIGlG--~IG~~vA~~l~ 217 (600)
+...+|+|+|+-+...-++ .+++=++.+.++ .|..+.|++|++||=+ ++..+++..+.
T Consensus 119 a~~~~vPVINa~~~~~HPt--QaL~Dl~Ti~e~------------------~g~~l~gl~ia~vGD~~~~v~~Sl~~~~~ 178 (334)
T PRK01713 119 AEYAGVPVFNGLTDEFHPT--QMLADVLTMIEN------------------CDKPLSEISYVYIGDARNNMGNSLLLIGA 178 (334)
T ss_pred HHhCCCCEEECCCCCCChH--HHHHHHHHHHHH------------------cCCCcCCcEEEEECCCccCHHHHHHHHHH
Confidence 3445689999866443333 222223332221 2334789999999986 67888999999
Q ss_pred cCCCEEEEECCCC--Chh--------HHHHcCCc---ccCHHHHhccCCEEEEec----CCCcc---------ccccccH
Q 007512 218 GLGMHVIAHDPYA--PAD--------RARAIGVD---LVSFDEAIATADFISLHM----PLTPA---------TSKVLND 271 (600)
Q Consensus 218 ~~g~~V~~~d~~~--~~~--------~a~~~g~~---~~~l~ell~~aDvV~l~~----Pl~~~---------t~~li~~ 271 (600)
.+|++|..+.|.. +.+ .+...|.. ..++++.+++||+|..-+ ....+ ....+++
T Consensus 179 ~~g~~v~~~~P~~~~p~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvVyt~~w~sm~~~~~~~~~~~~~~~~y~v~~ 258 (334)
T PRK01713 179 KLGMDVRICAPKALLPEASLVEMCEKFAKESGARITVTDDIDKAVKGVDFVHTDVWVSMGEPLETWGERIKLLMPYQVTP 258 (334)
T ss_pred HcCCEEEEECCchhcCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEcceeecccchhhHHHHHHhccCCcCCH
Confidence 9999999988754 211 12334543 248999999999998732 10000 1223577
Q ss_pred hHhccC-CCceEEEEcc
Q 007512 272 ETFGKM-KKGVRIINVA 287 (600)
Q Consensus 272 ~~l~~m-k~gailvNva 287 (600)
+.++.. |++++|.-|.
T Consensus 259 ell~~a~k~~aivmH~l 275 (334)
T PRK01713 259 ELMKRTGNPKVKFMHCL 275 (334)
T ss_pred HHHhccCCCCCEEECCC
Confidence 777765 6888888775
|
|
| >cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2 | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.035 Score=56.88 Aligned_cols=108 Identities=19% Similarity=0.200 Sum_probs=70.1
Q ss_pred ceeccCCEEEEEecChhHHHHHHHhhcCCCEEEEE--------CCCC-ChhHH------H-Hc------------CCccc
Q 007512 192 GVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAH--------DPYA-PADRA------R-AI------------GVDLV 243 (600)
Q Consensus 192 g~~l~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~--------d~~~-~~~~a------~-~~------------g~~~~ 243 (600)
+.++.|+|+.|-|+|++|+.+|+.|...|++|++. ||.- +.+.. + +. +.+..
T Consensus 33 ~~~l~g~~vaIqGfGnVG~~~a~~L~e~GakvvaVsD~~G~i~~~~Gld~~~l~~l~~~~~~~~~~v~~~~~~~~~a~~~ 112 (254)
T cd05313 33 NETLKGKRVAISGSGNVAQYAAEKLLELGAKVVTLSDSKGYVYDPDGFTGEKLAELKEIKEVRRGRVSEYAKKYGTAKYF 112 (254)
T ss_pred CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCceEECCCCCCHHHHHHHHHHHHhcCCcHHHHhhcCCCCEEe
Confidence 46889999999999999999999999999999953 3432 21110 0 11 12333
Q ss_pred CHHHHh-ccCCEEEEecCCCccccccccHhHhccCC--CceEEEEccCCccccHHHHHHhHhcCCc
Q 007512 244 SFDEAI-ATADFISLHMPLTPATSKVLNDETFGKMK--KGVRIINVARGGVIDEEALVRALDSGRV 306 (600)
Q Consensus 244 ~l~ell-~~aDvV~l~~Pl~~~t~~li~~~~l~~mk--~gailvNvarg~ivde~aL~~aL~~g~i 306 (600)
+-++++ .+||+++-|. +.+.|+.+....++ +=.+|+-.+-+++-. ++ -+.|.++.|
T Consensus 113 ~~~~~~~~~~DIliPcA-----l~~~I~~~na~~i~~~~ak~I~EgAN~p~t~-~a-~~~L~~rGI 171 (254)
T cd05313 113 EGKKPWEVPCDIAFPCA-----TQNEVDAEDAKLLVKNGCKYVAEGANMPCTA-EA-IEVFRQAGV 171 (254)
T ss_pred CCcchhcCCCcEEEecc-----ccccCCHHHHHHHHHcCCEEEEeCCCCCCCH-HH-HHHHHHCCc
Confidence 444443 4699998875 46678888777774 234566666677644 33 344555544
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t |
| >PRK09414 glutamate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.011 Score=65.18 Aligned_cols=108 Identities=21% Similarity=0.280 Sum_probs=69.8
Q ss_pred ceeccCCEEEEEecChhHHHHHHHhhcCCCEEEEE-C-------CCC-ChhHH---HH------------cCCcccCHHH
Q 007512 192 GVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAH-D-------PYA-PADRA---RA------------IGVDLVSFDE 247 (600)
Q Consensus 192 g~~l~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~-d-------~~~-~~~~a---~~------------~g~~~~~l~e 247 (600)
+.++.|+||.|.|+|++|+.+|+.|..+|++|++. | |.- +.+.. ++ .+.+..+.++
T Consensus 227 ~~~l~g~rVaIqGfGnVG~~~A~~L~~~GakVVavsDs~G~iyn~~GLD~~~L~~~k~~~~~~l~~~~~~~~~~~i~~~~ 306 (445)
T PRK09414 227 GDSFEGKRVVVSGSGNVAIYAIEKAQQLGAKVVTCSDSSGYVYDEEGIDLEKLKEIKEVRRGRISEYAEEFGAEYLEGGS 306 (445)
T ss_pred CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHhcCCchhhhhhhcCCeecCCcc
Confidence 45789999999999999999999999999999986 5 221 22210 00 0222334445
Q ss_pred Hhc-cCCEEEEecCCCccccccccHhHhccCC-Cce-EEEEccCCccccHHHHHHhHhcCCc
Q 007512 248 AIA-TADFISLHMPLTPATSKVLNDETFGKMK-KGV-RIINVARGGVIDEEALVRALDSGRV 306 (600)
Q Consensus 248 ll~-~aDvV~l~~Pl~~~t~~li~~~~l~~mk-~ga-ilvNvarg~ivde~aL~~aL~~g~i 306 (600)
++. +||+++-|.+ .+.|+.+....++ ++| +|+-.+-+++ ..++ -+.|.++.|
T Consensus 307 i~~~d~DVliPaAl-----~n~It~~~a~~i~~~~akiIvEgAN~p~-t~~A-~~~L~~rGI 361 (445)
T PRK09414 307 PWSVPCDIALPCAT-----QNELDEEDAKTLIANGVKAVAEGANMPS-TPEA-IEVFLEAGV 361 (445)
T ss_pred ccccCCcEEEecCC-----cCcCCHHHHHHHHHcCCeEEEcCCCCCC-CHHH-HHHHHHCCc
Confidence 544 6999998886 4457777666663 233 5556667776 4443 334655544
|
|
| >PRK04435 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.01 Score=55.79 Aligned_cols=73 Identities=15% Similarity=0.244 Sum_probs=57.2
Q ss_pred ccEEEEEecCCCCChhhHHhhhhcCCccccceEeeeecCCCcEEEEEEeCCCCc----HHHHHHHhcCCCcceEEEee
Q 007512 526 GSIILCRQVDQPGMIGTVGSILGSENVNVSFMSVGRVAPRKHAVMAIGVDEQPR----KETLKKIGDVPAIEEFVFLK 599 (600)
Q Consensus 526 ~~~Liv~~~D~pG~Ia~V~~iL~~~~INIa~m~v~R~~~g~~al~~i~~D~~~~----~~~l~~l~~~~~v~~v~~i~ 599 (600)
--+|.+...|+||+++.|.+.|+++++||-.++.. ...++.+-+.+.++.... .+++++|+++++|.+++.+-
T Consensus 69 ~vtL~i~l~Dr~GlLs~Il~~IA~~~aNIltI~q~-i~~~g~a~vs~tVevs~~~~~L~~Li~~L~~i~gV~~V~i~~ 145 (147)
T PRK04435 69 IITLSLLLEDRSGTLSKVLNVIAEAGGNILTINQS-IPLQGRANVTISIDTSSMEGDIDELLEKLRNLDGVEKVELIG 145 (147)
T ss_pred EEEEEEEEecCCCHHHHHHHHHHHcCCCeEEEEEE-cCCCCEEEEEEEEEeCChHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 44566778999999999999999999999999864 233455666666654432 38999999999999998874
|
|
| >PRK13301 putative L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.012 Score=60.37 Aligned_cols=91 Identities=20% Similarity=0.216 Sum_probs=58.2
Q ss_pred CEEEEEecChhHHHHHHHhhcC---CCEEEE-ECCCCChhHHHHcCCcc-cCHHHH-hccCCEEEEecCCCccccccccH
Q 007512 198 KTLAVLGFGKVGSEVARRAKGL---GMHVIA-HDPYAPADRARAIGVDL-VSFDEA-IATADFISLHMPLTPATSKVLND 271 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~---g~~V~~-~d~~~~~~~a~~~g~~~-~~l~el-l~~aDvV~l~~Pl~~~t~~li~~ 271 (600)
++|||||+|.||+.+++.+..- ++++.+ ||+...........+.. .+++++ ....|+|+=|.+... +-+
T Consensus 3 ~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~~~~~~~~~~~~~~~~~l~~ll~~~~DlVVE~A~~~a-----v~e 77 (267)
T PRK13301 3 HRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAADLPPALAGRVALLDGLPGLLAWRPDLVVEAAGQQA-----IAE 77 (267)
T ss_pred eEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCCHHHHHHhhccCcccCCHHHHhhcCCCEEEECCCHHH-----HHH
Confidence 6899999999999999998743 366554 56554222222222443 379997 588999999987332 212
Q ss_pred hHhccCCCceEEEEccCCcccc
Q 007512 272 ETFGKMKKGVRIINVARGGVID 293 (600)
Q Consensus 272 ~~l~~mk~gailvNvarg~ivd 293 (600)
--..-|+.|.-++=.+-|.+.|
T Consensus 78 ~~~~iL~~g~dlvv~SvGALaD 99 (267)
T PRK13301 78 HAEGCLTAGLDMIICSAGALAD 99 (267)
T ss_pred HHHHHHhcCCCEEEEChhHhcC
Confidence 2222245566666666688876
|
|
| >cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.0051 Score=51.23 Aligned_cols=47 Identities=13% Similarity=0.223 Sum_probs=37.7
Q ss_pred EEEEEecCCCCChhhHHhhhhcCCccccceEeeeecCCCcEEEEEEeCC
Q 007512 528 IILCRQVDQPGMIGTVGSILGSENVNVSFMSVGRVAPRKHAVMAIGVDE 576 (600)
Q Consensus 528 ~Liv~~~D~pG~Ia~V~~iL~~~~INIa~m~v~R~~~g~~al~~i~~D~ 576 (600)
.+.+.-+|+||+++.|++.|+++|.||.+++... .++.-.|++.++-
T Consensus 3 iltv~g~Dr~GiVa~vs~~la~~g~nI~d~~q~~--~~~~F~m~~~~~~ 49 (77)
T cd04893 3 VISALGTDRPGILNELTRAVSESGCNILDSRMAI--LGTEFALTMLVEG 49 (77)
T ss_pred EEEEEeCCCChHHHHHHHHHHHcCCCEEEceeeE--EcCEEEEEEEEEe
Confidence 3456689999999999999999999999999986 4555555555553
|
This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int |
| >TIGR00658 orni_carb_tr ornithine carbamoyltransferase | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.06 Score=56.77 Aligned_cols=126 Identities=21% Similarity=0.227 Sum_probs=79.5
Q ss_pred HhCCceeecCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCccccccccceeccCCEEEEEec-ChhHHHHHHHhhcC
Q 007512 141 TEFGCLVVNAPTANTVAAAEHGIALLAAMARNVAQADASVKAGKWQRNKYVGVSLVGKTLAVLGF-GKVGSEVARRAKGL 219 (600)
Q Consensus 141 ~~~GI~V~n~p~~~~~~vAE~~l~lll~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktiGIIGl-G~IG~~vA~~l~~~ 219 (600)
+.-+|+|+|+-+...-++ .+++=++.+.++ .| .+.|.+|+++|- +++-++++..+..|
T Consensus 113 ~~~~vPVINa~~~~~HPt--QaL~Dl~Ti~e~------------------~g-~l~g~~v~~vGd~~~v~~Sl~~~l~~~ 171 (304)
T TIGR00658 113 KYASVPVINGLTDLFHPC--QALADLLTIIEH------------------FG-KLKGVKVVYVGDGNNVCNSLMLAGAKL 171 (304)
T ss_pred HhCCCCEEECCCCCCChH--HHHHHHHHHHHH------------------hC-CCCCcEEEEEeCCCchHHHHHHHHHHc
Confidence 334689999865443333 223333333221 12 277999999997 78999999999999
Q ss_pred CCEEEEECCCC--ChhH--------HHHcCCc---ccCHHHHhccCCEEEEec--CCCc----------cccccccHhHh
Q 007512 220 GMHVIAHDPYA--PADR--------ARAIGVD---LVSFDEAIATADFISLHM--PLTP----------ATSKVLNDETF 274 (600)
Q Consensus 220 g~~V~~~d~~~--~~~~--------a~~~g~~---~~~l~ell~~aDvV~l~~--Pl~~----------~t~~li~~~~l 274 (600)
|++|....|.. ..+. +.+.|.. ..++++.+++||+|..-. .... -....++++.+
T Consensus 172 g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvy~~~w~~~~~~~~~~~~~~~~~~y~l~~~~l 251 (304)
T TIGR00658 172 GMDVVVATPEGYEPDADIVKKAQEIAKENGGSVELTHDPVEAVKGADVIYTDVWVSMGEEDKKEERLKLFRPYQVNEELM 251 (304)
T ss_pred CCEEEEECCchhcCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEcCcccCccccccHHHHHHhcCCcCCHHHH
Confidence 99999987754 1111 2334542 248999999999998842 1110 01224566666
Q ss_pred ccCCCceEEEEcc
Q 007512 275 GKMKKGVRIINVA 287 (600)
Q Consensus 275 ~~mk~gailvNva 287 (600)
+.+|+++++.-|.
T Consensus 252 ~~~~~~~ivmHpl 264 (304)
T TIGR00658 252 ELAKPEVIFMHCL 264 (304)
T ss_pred hhcCCCCEEECCC
Confidence 6677777766664
|
Most OTCases are homotrimers, but the homotrimers are organized into dodecamers built from four trimers in at least two species; the catabolic OTCase of Pseudomonas aeruginosa is allosterically regulated, while OTCase of the extreme thermophile Pyrococcus furiosus shows both allostery and thermophily. |
| >cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.011 Score=45.80 Aligned_cols=65 Identities=12% Similarity=0.384 Sum_probs=48.9
Q ss_pred EEecCCCCChhhHHhhhhcCCccccceEeeeecCCCcEEEEEEeCCCC---cHHHHHHHhcCCCcceEE
Q 007512 531 CRQVDQPGMIGTVGSILGSENVNVSFMSVGRVAPRKHAVMAIGVDEQP---RKETLKKIGDVPAIEEFV 596 (600)
Q Consensus 531 v~~~D~pG~Ia~V~~iL~~~~INIa~m~v~R~~~g~~al~~i~~D~~~---~~~~l~~l~~~~~v~~v~ 596 (600)
+...|+||.++.+.+.|+++++||.++...... ++...+.+.++.+- -..++++|+.+++|..+.
T Consensus 3 v~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~v~ 70 (71)
T cd04876 3 VEAIDRPGLLADITTVIAEEKINILSVNTRTDD-DGLATIRLTLEVRDLEHLARIMRKLRQIPGVIDVR 70 (71)
T ss_pred EEEeccCcHHHHHHHHHHhCCCCEEEEEeEECC-CCEEEEEEEEEECCHHHHHHHHHHHhCCCCcEEEE
Confidence 557799999999999999999999999886432 34466666665332 236788888888887653
|
ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes i |
| >PRK06823 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.012 Score=62.44 Aligned_cols=86 Identities=19% Similarity=0.263 Sum_probs=64.1
Q ss_pred CCEEEEEecChhHHHHHHHhhc-CC-CEEEEECCCCCh-hH----HHHcCCcc---cCHHHHhccCCEEEEecCCCcccc
Q 007512 197 GKTLAVLGFGKVGSEVARRAKG-LG-MHVIAHDPYAPA-DR----ARAIGVDL---VSFDEAIATADFISLHMPLTPATS 266 (600)
Q Consensus 197 gktiGIIGlG~IG~~vA~~l~~-~g-~~V~~~d~~~~~-~~----a~~~g~~~---~~l~ell~~aDvV~l~~Pl~~~t~ 266 (600)
-++++|||.|..++.-++.+.. +. -+|.+||++... +. ..+.++.. .+.++++++||+|+.|+|.+ .
T Consensus 128 ~~~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~r~~~~a~~~~~~~~~~~~~v~~~~~~~~av~~ADIV~taT~s~---~ 204 (315)
T PRK06823 128 VSAIGIVGTGIQARMQLMYLKNVTDCRQLWVWGRSETALEEYRQYAQALGFAVNTTLDAAEVAHAANLIVTTTPSR---E 204 (315)
T ss_pred CCEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhcCCcEEEECCHHHHhcCCCEEEEecCCC---C
Confidence 5699999999999999998873 33 489999998732 21 22224432 37899999999999998844 4
Q ss_pred ccccHhHhccCCCceEEEEccC
Q 007512 267 KVLNDETFGKMKKGVRIINVAR 288 (600)
Q Consensus 267 ~li~~~~l~~mk~gailvNvar 288 (600)
-+++.+ .+|||+.|+.+|.
T Consensus 205 P~~~~~---~l~~G~hi~~iGs 223 (315)
T PRK06823 205 PLLQAE---DIQPGTHITAVGA 223 (315)
T ss_pred ceeCHH---HcCCCcEEEecCC
Confidence 566655 3589999999985
|
|
| >COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.014 Score=62.02 Aligned_cols=86 Identities=27% Similarity=0.309 Sum_probs=64.4
Q ss_pred CCEEEEEecChhHHHHHHHhhc-CCC-EEEEECCCCC-hhH-H---HHc-CC--c-ccCHHHHhccCCEEEEecCCCccc
Q 007512 197 GKTLAVLGFGKVGSEVARRAKG-LGM-HVIAHDPYAP-ADR-A---RAI-GV--D-LVSFDEAIATADFISLHMPLTPAT 265 (600)
Q Consensus 197 gktiGIIGlG~IG~~vA~~l~~-~g~-~V~~~d~~~~-~~~-a---~~~-g~--~-~~~l~ell~~aDvV~l~~Pl~~~t 265 (600)
-++++|||.|..++.-.+.++. ++. +|.+|+++.. .+. + .+. +. . ..+.+++++.||+|+.|+|.++
T Consensus 130 a~~laiIGaG~qA~~ql~a~~~v~~~~~I~i~~r~~~~~e~~a~~l~~~~~~~v~a~~s~~~av~~aDiIvt~T~s~~-- 207 (330)
T COG2423 130 ASTLAIIGAGAQARTQLEALKAVRDIREIRVYSRDPEAAEAFAARLRKRGGEAVGAADSAEEAVEGADIVVTATPSTE-- 207 (330)
T ss_pred CcEEEEECCcHHHHHHHHHHHhhCCccEEEEEcCCHHHHHHHHHHHHhhcCccceeccCHHHHhhcCCEEEEecCCCC--
Confidence 4589999999999999999984 454 8999998873 222 2 122 22 2 3378999999999999999664
Q ss_pred cccccHhHhccCCCceEEEEccC
Q 007512 266 SKVLNDETFGKMKKGVRIINVAR 288 (600)
Q Consensus 266 ~~li~~~~l~~mk~gailvNvar 288 (600)
-++..+. +|||+.|..+|.
T Consensus 208 -Pil~~~~---l~~G~hI~aiGa 226 (330)
T COG2423 208 -PVLKAEW---LKPGTHINAIGA 226 (330)
T ss_pred -CeecHhh---cCCCcEEEecCC
Confidence 5565554 579999999984
|
|
| >COG2150 Predicted regulator of amino acid metabolism, contains ACT domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.0084 Score=56.35 Aligned_cols=65 Identities=8% Similarity=0.265 Sum_probs=55.7
Q ss_pred ecCCCCChhhHHhhhhcCCccccceEeeeecCCCcEEEEEEeCCCCcHHHHHHHhcCCCcceEEE
Q 007512 533 QVDQPGMIGTVGSILGSENVNVSFMSVGRVAPRKHAVMAIGVDEQPRKETLKKIGDVPAIEEFVF 597 (600)
Q Consensus 533 ~~D~pG~Ia~V~~iL~~~~INIa~m~v~R~~~g~~al~~i~~D~~~~~~~l~~l~~~~~v~~v~~ 597 (600)
-.+.||+++.|.+.++++||+|-..-..--+-.+++.+.|=++.++|.+++.+|+++++|..+..
T Consensus 102 ~~~~pgi~A~V~~~iak~gi~Irqi~~~dpe~~~e~~l~IVte~~iP~~li~el~~i~gVk~i~I 166 (167)
T COG2150 102 DARYPGILAGVASLIAKRGISIRQIISEDPELQEEPKLTIVTERPIPGDLIDELKKIDGVKKISI 166 (167)
T ss_pred cCCCccHHHHHHHHHHHcCceEEEEecCCcccCCCceEEEEEeccCCHHHHHHHhcccCceeEEe
Confidence 45789999999999999999998876653335667888888899999999999999999988753
|
|
| >cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.008 Score=47.97 Aligned_cols=59 Identities=14% Similarity=0.281 Sum_probs=44.2
Q ss_pred EEEecCCCCChhhHHhhhhcCCccccceEeeeec---CCCcEEEEEEeCCCCcH---HHHHHHhc
Q 007512 530 LCRQVDQPGMIGTVGSILGSENVNVSFMSVGRVA---PRKHAVMAIGVDEQPRK---ETLKKIGD 588 (600)
Q Consensus 530 iv~~~D~pG~Ia~V~~iL~~~~INIa~m~v~R~~---~g~~al~~i~~D~~~~~---~~l~~l~~ 588 (600)
-+..+|+||.++.|.+.++++++||..+...+.. ..+.+.+.+.++-.-.+ +++++|++
T Consensus 2 ~v~~~d~~G~L~~i~~~i~~~~~nI~~i~~~~~~~~~~~~~~~~~i~v~~~~~~~l~~l~~~l~~ 66 (73)
T cd04886 2 RVELPDRPGQLAKLLAVIAEAGANIIEVSHDRAFKTLPLGEVEVELTLETRGAEHIEEIIAALRE 66 (73)
T ss_pred EEEeCCCCChHHHHHHHHHHcCCCEEEEEEEeccCCCCCceEEEEEEEEeCCHHHHHHHHHHHHH
Confidence 3567899999999999999999999999987643 24556666666554333 66677665
|
This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains. |
| >cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.02 Score=57.38 Aligned_cols=104 Identities=29% Similarity=0.334 Sum_probs=65.1
Q ss_pred eeccCCEEEEEecChhHHHHHHHhhcCCCEEEE-ECCCC-------ChhH----HHHc-CCcc------cCHHHHh-ccC
Q 007512 193 VSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIA-HDPYA-------PADR----ARAI-GVDL------VSFDEAI-ATA 252 (600)
Q Consensus 193 ~~l~gktiGIIGlG~IG~~vA~~l~~~g~~V~~-~d~~~-------~~~~----a~~~-g~~~------~~l~ell-~~a 252 (600)
.++.|+++.|.|+|++|+.+|+.|...|.+|++ .|.+. +.+. ..+. ++.. .+-++++ .+|
T Consensus 19 ~~l~g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g~i~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 98 (217)
T cd05211 19 DSLEGLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDGYIYDPGITTEELINYAVALGGSARVKVQDYFPGEAILGLDV 98 (217)
T ss_pred CCcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCcEECCCCCHHHHHHHHHhhCCccccCcccccCcccceeccc
Confidence 478899999999999999999999999987766 45433 1111 1111 1211 1113332 479
Q ss_pred CEEEEecCCCccccccccHhHhccCCCceEEEEccCCccccHHHHHHhHhcC
Q 007512 253 DFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVIDEEALVRALDSG 304 (600)
Q Consensus 253 DvV~l~~Pl~~~t~~li~~~~l~~mk~gailvNvarg~ivde~aL~~aL~~g 304 (600)
|+++-|.+- +.++.+....++ -.+|+-.+.+++-+ ++ .+.|.+.
T Consensus 99 DVlipaA~~-----~~i~~~~a~~l~-a~~V~e~AN~p~t~-~a-~~~L~~~ 142 (217)
T cd05211 99 DIFAPCALG-----NVIDLENAKKLK-AKVVAEGANNPTTD-EA-LRILHER 142 (217)
T ss_pred cEEeecccc-----CccChhhHhhcC-ccEEEeCCCCCCCH-HH-HHHHHHC
Confidence 999999873 357777777776 23455555666644 33 3344443
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral |
| >PRK14030 glutamate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.03 Score=61.76 Aligned_cols=108 Identities=27% Similarity=0.394 Sum_probs=70.8
Q ss_pred ceeccCCEEEEEecChhHHHHHHHhhcCCCEEEE--------ECCCC-ChhHH------H------------Hc-CCccc
Q 007512 192 GVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIA--------HDPYA-PADRA------R------------AI-GVDLV 243 (600)
Q Consensus 192 g~~l~gktiGIIGlG~IG~~vA~~l~~~g~~V~~--------~d~~~-~~~~a------~------------~~-g~~~~ 243 (600)
|.+|.|+|+.|=|+|++|+..|+.|...|++|++ |||.- +.+.. + .. |.+.+
T Consensus 223 g~~l~g~~vaIQGfGnVG~~aA~~L~e~GakvVavSD~~G~i~d~~Gld~~~l~~l~~~k~~~~~~~~~~~~~~~ga~~i 302 (445)
T PRK14030 223 GIDIKGKTVAISGFGNVAWGAATKATELGAKVVTISGPDGYIYDPDGISGEKIDYMLELRASGNDIVAPYAEKFPGSTFF 302 (445)
T ss_pred CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHHHHhcCccHHHHHhcCCCCEEc
Confidence 5579999999999999999999999999999999 88764 43220 0 11 33333
Q ss_pred CHHHHh-ccCCEEEEecCCCccccccccHhHhccCC-Cce-EEEEccCCccccHHHHHHhHhcCCc
Q 007512 244 SFDEAI-ATADFISLHMPLTPATSKVLNDETFGKMK-KGV-RIINVARGGVIDEEALVRALDSGRV 306 (600)
Q Consensus 244 ~l~ell-~~aDvV~l~~Pl~~~t~~li~~~~l~~mk-~ga-ilvNvarg~ivde~aL~~aL~~g~i 306 (600)
+-++++ ..||+.+-|. +.+.|+.+....+. .+| +|+--+-+ .+..++- +.|.+..|
T Consensus 303 ~~~~~~~~~cDVliPcA-----l~n~I~~~na~~l~~~~ak~V~EgAN~-p~t~eA~-~iL~~rGI 361 (445)
T PRK14030 303 AGKKPWEQKVDIALPCA-----TQNELNGEDADKLIKNGVLCVAEVSNM-GCTAEAI-DKFIAAKQ 361 (445)
T ss_pred CCccceeccccEEeecc-----ccccCCHHHHHHHHHcCCeEEEeCCCC-CCCHHHH-HHHHHCCC
Confidence 444444 3588887776 45667777766662 223 45555556 4554443 34555444
|
|
| >cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.0089 Score=48.75 Aligned_cols=60 Identities=18% Similarity=0.182 Sum_probs=42.3
Q ss_pred EEEEecCCCCChhhHHhhhhcCCccccceEeeeec-CCCcEEEEEEeCCCCc---HHHHHHHhc
Q 007512 529 ILCRQVDQPGMIGTVGSILGSENVNVSFMSVGRVA-PRKHAVMAIGVDEQPR---KETLKKIGD 588 (600)
Q Consensus 529 Liv~~~D~pG~Ia~V~~iL~~~~INIa~m~v~R~~-~g~~al~~i~~D~~~~---~~~l~~l~~ 588 (600)
+-+..+|+||.++.++++|+++|+||-.+...|.. ..+.....+.++.+.+ ++++++|++
T Consensus 2 l~v~~~d~pG~L~~l~~~i~~~g~nI~~i~~~~~~~~~~~~~~~v~v~~e~~~~~~~i~~~L~~ 65 (72)
T cd04884 2 FTFLLEDKPGTLKPVVDTLREFNARIISILTAFEDAPDGMRRVFIRVTPMDRSKENELIEELKA 65 (72)
T ss_pred EEEEecCCCccHHHHHHHHHHCCCeEEEEEeccccCCCCccEEEEEEEEecchHHHHHHHHHhC
Confidence 34567999999999999999999999999888752 2233444555544333 256666654
|
This CD includes the C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This protein has two N-terminal tandem CBS domains and a single C-terminal ACT domain. The CBS domain is found in a wide range of proteins, often in tandem arrangements and together with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Members of this CD belong to the superfamily of ACT regulatory domains. |
| >PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.0037 Score=56.53 Aligned_cols=85 Identities=19% Similarity=0.388 Sum_probs=51.5
Q ss_pred EEEEEe-cChhHHHHHHHhhcC-CCEEEE-ECCCCC--hhHHHHc----CCc---ccC-HHHHhccCCEEEEecCCCccc
Q 007512 199 TLAVLG-FGKVGSEVARRAKGL-GMHVIA-HDPYAP--ADRARAI----GVD---LVS-FDEAIATADFISLHMPLTPAT 265 (600)
Q Consensus 199 tiGIIG-lG~IG~~vA~~l~~~-g~~V~~-~d~~~~--~~~a~~~----g~~---~~~-l~ell~~aDvV~l~~Pl~~~t 265 (600)
+|+||| .|.+|+.+.++|... .+++.. +++..+ ....... +.. ..+ -.+.+.++|+|++|+|... +
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvf~a~~~~~-~ 79 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSEVFPHPKGFEDLSVEDADPEELSDVDVVFLALPHGA-S 79 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHHTTGGGTTTEEEBEEETSGHHHTTESEEEE-SCHHH-H
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeehhccccccccceeEeecchhHhhcCCEEEecCchhH-H
Confidence 689999 999999999999864 677654 333321 1111111 121 111 2244599999999999432 2
Q ss_pred cccccHhHhccCCCceEEEEccC
Q 007512 266 SKVLNDETFGKMKKGVRIINVAR 288 (600)
Q Consensus 266 ~~li~~~~l~~mk~gailvNvar 288 (600)
..+.. . + +++|+.+||.+.
T Consensus 80 ~~~~~-~-~--~~~g~~ViD~s~ 98 (121)
T PF01118_consen 80 KELAP-K-L--LKAGIKVIDLSG 98 (121)
T ss_dssp HHHHH-H-H--HHTTSEEEESSS
T ss_pred HHHHH-H-H--hhCCcEEEeCCH
Confidence 22221 1 1 578999999973
|
This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C .... |
| >PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1 | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.0058 Score=56.92 Aligned_cols=106 Identities=18% Similarity=0.244 Sum_probs=70.5
Q ss_pred EEEEecChhHHHHHHHhhcCCCEEEEECCCCChhHHHHcCCccc--------------C-HHHHhccCCEEEEecCCCcc
Q 007512 200 LAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPADRARAIGVDLV--------------S-FDEAIATADFISLHMPLTPA 264 (600)
Q Consensus 200 iGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~~~~a~~~g~~~~--------------~-l~ell~~aDvV~l~~Pl~~~ 264 (600)
|.|+|.|.||.-+|.+|+..|.+|..+++....+...+.|+... + ..+....+|+|++|+... +
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~vKa~-~ 79 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSPRLEAIKEQGLTITGPDGDETVQPPIVISAPSADAGPYDLVIVAVKAY-Q 79 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHHHHHHHHHHCEEEEETTEEEEEEEEEEESSHGHHHSTESEEEE-SSGG-G
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccccHHhhhheeEEEEecccceecccccccCcchhccCCCcEEEEEeccc-c
Confidence 68999999999999999989999999987653333445554221 1 124678899999999844 3
Q ss_pred ccccccHhHhccCCCceEEEEccCCccccHHHHHHhHhcCCceE
Q 007512 265 TSKVLNDETFGKMKKGVRIINVARGGVIDEEALVRALDSGRVAQ 308 (600)
Q Consensus 265 t~~li~~~~l~~mk~gailvNvarg~ivde~aL~~aL~~g~i~g 308 (600)
+...+.. .-..+++++.++-.--| +-.++.+.+.+...++.+
T Consensus 80 ~~~~l~~-l~~~~~~~t~iv~~qNG-~g~~~~l~~~~~~~~v~~ 121 (151)
T PF02558_consen 80 LEQALQS-LKPYLDPNTTIVSLQNG-MGNEEVLAEYFPRPRVLG 121 (151)
T ss_dssp HHHHHHH-HCTGEETTEEEEEESSS-SSHHHHHHCHSTGSGEEE
T ss_pred hHHHHHH-HhhccCCCcEEEEEeCC-CCcHHHHHHHcCCCcEEE
Confidence 4554433 34446677677766555 334666666665556655
|
1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B .... |
| >COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.0082 Score=59.74 Aligned_cols=93 Identities=18% Similarity=0.276 Sum_probs=60.4
Q ss_pred CEEEEEecChhHHHHHHHhhcC--CCE-EEEECCCCChhHHH--HcCC-cccCHHHHhccCCEEEEecCCCccccccccH
Q 007512 198 KTLAVLGFGKVGSEVARRAKGL--GMH-VIAHDPYAPADRAR--AIGV-DLVSFDEAIATADFISLHMPLTPATSKVLND 271 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~--g~~-V~~~d~~~~~~~a~--~~g~-~~~~l~ell~~aDvV~l~~Pl~~~t~~li~~ 271 (600)
.+|||||+|.||+.+.+.++.- +++ +.+||+........ ..+. ...++++++++.|+++=|..... .+.+
T Consensus 1 l~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~~~ek~~~~~~~~~~~~~s~ide~~~~~DlvVEaAS~~A-v~e~--- 76 (255)
T COG1712 1 LKVGIVGCGAIGKFLLELVRDGRVDFELVAVYDRDEEKAKELEASVGRRCVSDIDELIAEVDLVVEAASPEA-VREY--- 76 (255)
T ss_pred CeEEEEeccHHHHHHHHHHhcCCcceeEEEEecCCHHHHHHHHhhcCCCccccHHHHhhccceeeeeCCHHH-HHHH---
Confidence 3799999999999999999843 454 56799876433222 2232 23579999999999999886222 2222
Q ss_pred hHhccCCCceEEEEccCCccccHH
Q 007512 272 ETFGKMKKGVRIINVARGGVIDEE 295 (600)
Q Consensus 272 ~~l~~mk~gailvNvarg~ivde~ 295 (600)
..+.||.|.=++=++-|.+.|+.
T Consensus 77 -~~~~L~~g~d~iV~SVGALad~~ 99 (255)
T COG1712 77 -VPKILKAGIDVIVMSVGALADEG 99 (255)
T ss_pred -hHHHHhcCCCEEEEechhccChH
Confidence 22334555444444457777554
|
|
| >PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.01 Score=65.90 Aligned_cols=109 Identities=21% Similarity=0.263 Sum_probs=68.4
Q ss_pred eccCCEEEEEecChhHHHHHHHhhcCCCEEEEECCCCC-h-----hHHHHcCCccc---CHHHHhccCCEEEEecCCCcc
Q 007512 194 SLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAP-A-----DRARAIGVDLV---SFDEAIATADFISLHMPLTPA 264 (600)
Q Consensus 194 ~l~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~-~-----~~a~~~g~~~~---~l~ell~~aDvV~l~~Pl~~~ 264 (600)
.+.+++|+|+|+|..|.++|+.|+..|++|.++|.+.. . ....+.|+... ...+.+.++|+|+.. |--+.
T Consensus 11 ~~~~~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~dlVV~S-pgi~~ 89 (458)
T PRK01710 11 FIKNKKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKSEEELGEVSNELKELGVKLVLGENYLDKLDGFDVIFKT-PSMRI 89 (458)
T ss_pred hhcCCeEEEEcccHHHHHHHHHHHHCCCEEEEECCCCCccchHHHHHHHhCCCEEEeCCCChHHhccCCEEEEC-CCCCC
Confidence 45689999999999999999999999999999997642 1 22445576543 234556889999886 54332
Q ss_pred ccc-----------cccHh-HhccC-CCceEEEEccCCccccHHHHHHhHhc
Q 007512 265 TSK-----------VLNDE-TFGKM-KKGVRIINVARGGVIDEEALVRALDS 303 (600)
Q Consensus 265 t~~-----------li~~~-~l~~m-k~gailvNvarg~ivde~aL~~aL~~ 303 (600)
+.. ++++- .+... +...+-|-=+.|+.-..+-+...|+.
T Consensus 90 ~~p~~~~a~~~~i~i~s~~e~~~~~~~~~vIaITGTnGKTTT~~ll~~iL~~ 141 (458)
T PRK01710 90 DSPELVKAKEEGAYITSEMEEFIKYCPAKVFGVTGSDGKTTTTTLIYEMLKE 141 (458)
T ss_pred CchHHHHHHHcCCcEEechHHhhhhcCCCEEEEECCCCHHHHHHHHHHHHHh
Confidence 222 22221 12122 22233333346877555555565654
|
|
| >PRK06199 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.013 Score=63.56 Aligned_cols=91 Identities=16% Similarity=0.177 Sum_probs=64.8
Q ss_pred CCEEEEEecChhHHHHHHHhhc-CC--CEEEEECCCCCh-h-HHH----Hc-CC---c-ccCHHHHhccCCEEEEecCCC
Q 007512 197 GKTLAVLGFGKVGSEVARRAKG-LG--MHVIAHDPYAPA-D-RAR----AI-GV---D-LVSFDEAIATADFISLHMPLT 262 (600)
Q Consensus 197 gktiGIIGlG~IG~~vA~~l~~-~g--~~V~~~d~~~~~-~-~a~----~~-g~---~-~~~l~ell~~aDvV~l~~Pl~ 262 (600)
-++++|||.|..++.-.+.+.. +. -+|.+||+.... + .+. .. ++ . ..+.++++++||+|+.|++.+
T Consensus 155 a~~l~iiG~G~QA~~~l~a~~~v~~~i~~V~v~~r~~~~a~~f~~~~~~~~~~~~~v~~~~s~~eav~~ADIVvtaT~s~ 234 (379)
T PRK06199 155 SKVVGLLGPGVMGKTILAAFMAVCPGIDTIKIKGRGQKSLDSFATWVAETYPQITNVEVVDSIEEVVRGSDIVTYCNSGE 234 (379)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCCceEEEeCCHHHHHcCCCEEEEccCCC
Confidence 4689999999999999998875 42 489999998732 2 111 11 22 2 237999999999999999854
Q ss_pred c---cccccccHhHhccCCCceEEEEccCCc
Q 007512 263 P---ATSKVLNDETFGKMKKGVRIINVARGG 290 (600)
Q Consensus 263 ~---~t~~li~~~~l~~mk~gailvNvarg~ 290 (600)
. .+.-++..+. +|||+.|+.++.-+
T Consensus 235 ~~~~s~~Pv~~~~~---lkpG~hv~~ig~~e 262 (379)
T PRK06199 235 TGDPSTYPYVKREW---VKPGAFLLMPAACR 262 (379)
T ss_pred CCCCCcCcEecHHH---cCCCcEEecCCccc
Confidence 3 2345666554 58999888776543
|
|
| >cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB) | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.01 Score=49.03 Aligned_cols=33 Identities=15% Similarity=0.325 Sum_probs=28.7
Q ss_pred EEEecCCCCChhhHHhhhhcCCccccceEeeee
Q 007512 530 LCRQVDQPGMIGTVGSILGSENVNVSFMSVGRV 562 (600)
Q Consensus 530 iv~~~D~pG~Ia~V~~iL~~~~INIa~m~v~R~ 562 (600)
-+.-+|+||+++.|++.|+++|+||.+++....
T Consensus 3 tv~G~DrpGiv~~vt~~la~~~~nI~dl~~~~~ 35 (75)
T cd04870 3 TVTGPDRPGLTSALTEVLAAHGVRILDVGQAVI 35 (75)
T ss_pred EEEcCCCCCHHHHHHHHHHHCCCCEEecccEEE
Confidence 456789999999999999999999999975443
|
The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains. |
| >PRK06407 ornithine cyclodeaminase; Provisional | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.021 Score=60.08 Aligned_cols=86 Identities=13% Similarity=0.102 Sum_probs=62.3
Q ss_pred CCEEEEEecChhHHHHHHHhhc-CCC-EEEEECCCCCh-h-HHHH----cCCc--c-cCHHHHhccCCEEEEecCCCccc
Q 007512 197 GKTLAVLGFGKVGSEVARRAKG-LGM-HVIAHDPYAPA-D-RARA----IGVD--L-VSFDEAIATADFISLHMPLTPAT 265 (600)
Q Consensus 197 gktiGIIGlG~IG~~vA~~l~~-~g~-~V~~~d~~~~~-~-~a~~----~g~~--~-~~l~ell~~aDvV~l~~Pl~~~t 265 (600)
-+++||||.|..|+.-++.+.. +.. +|.+||++... + .+.+ .|++ . .+.++++.+||+|+.++|.+
T Consensus 117 a~~l~iiGaG~QA~~~~~a~~~v~~i~~v~v~~r~~~~a~~f~~~~~~~~~~~v~~~~~~~eav~~aDIV~taT~s~--- 193 (301)
T PRK06407 117 VENFTIIGSGFQAETQLEGMASVYNPKRIRVYSRNFDHARAFAERFSKEFGVDIRPVDNAEAALRDADTITSITNSD--- 193 (301)
T ss_pred CcEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEecCCC---
Confidence 5799999999999999888874 443 89999988732 2 1222 2443 2 37999999999999998844
Q ss_pred cccccHhHhccCCCceEEEEccC
Q 007512 266 SKVLNDETFGKMKKGVRIINVAR 288 (600)
Q Consensus 266 ~~li~~~~l~~mk~gailvNvar 288 (600)
.-++..+. +|||+.+.-+|.
T Consensus 194 ~P~~~~~~---l~pg~hV~aiGs 213 (301)
T PRK06407 194 TPIFNRKY---LGDEYHVNLAGS 213 (301)
T ss_pred CcEecHHH---cCCCceEEecCC
Confidence 45565553 578877776664
|
|
| >PLN02527 aspartate carbamoyltransferase | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.11 Score=54.93 Aligned_cols=93 Identities=12% Similarity=0.131 Sum_probs=62.3
Q ss_pred eccCCEEEEEecC---hhHHHHHHHhhcC-CCEEEEECCCC---Ch---hHHHHcCCcc---cCHHHHhccCCEEEEecC
Q 007512 194 SLVGKTLAVLGFG---KVGSEVARRAKGL-GMHVIAHDPYA---PA---DRARAIGVDL---VSFDEAIATADFISLHMP 260 (600)
Q Consensus 194 ~l~gktiGIIGlG---~IG~~vA~~l~~~-g~~V~~~d~~~---~~---~~a~~~g~~~---~~l~ell~~aDvV~l~~P 260 (600)
.+.|.||++||-+ ++..+++..+..+ |++|....|.. +. +.+.+.|... .++++.+++||+|..-.-
T Consensus 148 ~l~g~kva~vGD~~~~rv~~Sl~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvyt~~~ 227 (306)
T PLN02527 148 RLDGIKVGLVGDLANGRTVRSLAYLLAKYEDVKIYFVAPDVVKMKDDIKDYLTSKGVEWEESSDLMEVASKCDVLYQTRI 227 (306)
T ss_pred CcCCCEEEEECCCCCChhHHHHHHHHHhcCCCEEEEECCCccCCCHHHHHHHHHcCCEEEEEcCHHHHhCCCCEEEECCc
Confidence 3779999999976 6899999998887 99998887743 21 1233445532 489999999999988431
Q ss_pred CCcc-------------ccccccHhHhccCCCceEEEEcc
Q 007512 261 LTPA-------------TSKVLNDETFGKMKKGVRIINVA 287 (600)
Q Consensus 261 l~~~-------------t~~li~~~~l~~mk~gailvNva 287 (600)
..+ -...++++.++.+|++++|.-|.
T Consensus 228 -q~e~~~~~~~~~~~~~~~y~v~~~ll~~a~~~~ivmHcl 266 (306)
T PLN02527 228 -QRERFGERIDLYEAARGKYIVDKKVMDVLPKHAVVMHPL 266 (306)
T ss_pred -chhhhcchHHHHHHhCCCceECHHHHhccCCCCEEECCC
Confidence 100 01334555555566666666554
|
|
| >PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.011 Score=64.88 Aligned_cols=67 Identities=24% Similarity=0.227 Sum_probs=46.7
Q ss_pred CCEEEEEecChhHHHHHHHhhcCCCEEEEECCCCChhHHH-HcCCc-ccCHHHHhccCCEEEEecCCCc
Q 007512 197 GKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPADRAR-AIGVD-LVSFDEAIATADFISLHMPLTP 263 (600)
Q Consensus 197 gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~~~~a~-~~g~~-~~~l~ell~~aDvV~l~~Pl~~ 263 (600)
.++|.|||+|.+|.++|+.|+..|++|.++|++....... ...-. ....+....++|+|+.+.+..+
T Consensus 3 ~~~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvV~s~gi~~ 71 (418)
T PRK00683 3 LQRVVVLGLGVTGKSIARFLAQKGVYVIGVDKSLEALQSCPYIHERYLENAEEFPEQVDLVVRSPGIKK 71 (418)
T ss_pred CCeEEEEEECHHHHHHHHHHHHCCCEEEEEeCCccccchhHHHhhhhcCCcHHHhcCCCEEEECCCCCC
Confidence 4689999999999999999999999999999875321110 00001 1123344578999988876554
|
|
| >PRK02255 putrescine carbamoyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.095 Score=56.05 Aligned_cols=64 Identities=25% Similarity=0.319 Sum_probs=49.2
Q ss_pred eccCCEEEEEec-ChhHHHHHHHhhcCCCEEEEECCCC---ChhH---H----HHcCC--c-ccCHHHHhccCCEEEE
Q 007512 194 SLVGKTLAVLGF-GKVGSEVARRAKGLGMHVIAHDPYA---PADR---A----RAIGV--D-LVSFDEAIATADFISL 257 (600)
Q Consensus 194 ~l~gktiGIIGl-G~IG~~vA~~l~~~g~~V~~~d~~~---~~~~---a----~~~g~--~-~~~l~ell~~aDvV~l 257 (600)
.+.|++|++||= .++..+++..+..+|++|..+.|.. +.+. + ...|. . ..++++.+++||+|..
T Consensus 151 ~l~glkv~~vGD~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~eav~~aDvvy~ 228 (338)
T PRK02255 151 KLEDCKVVFVGDATQVCVSLMFIATKMGMDFVHFGPKGYQLPEEHLAIAEENCEVSGGSVLVTDDVDEAVKDADFVYT 228 (338)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHhCCCEEEEECCCccccCHHHHHHHHHHHHhcCCeEEEEcCHHHHhCCCCEEEE
Confidence 578999999997 6888899999999999999988753 2111 1 22353 2 2489999999999988
|
|
| >PRK00676 hemA glutamyl-tRNA reductase; Validated | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.019 Score=61.07 Aligned_cols=90 Identities=11% Similarity=0.051 Sum_probs=56.9
Q ss_pred eccCCEEEEEecChhHHHHHHHhhcCCC-EEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEecCCCccccccccHh
Q 007512 194 SLVGKTLAVLGFGKVGSEVARRAKGLGM-HVIAHDPYAPADRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVLNDE 272 (600)
Q Consensus 194 ~l~gktiGIIGlG~IG~~vA~~l~~~g~-~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Pl~~~t~~li~~~ 272 (600)
.+.|+++.|||.|.||+.+++.|...|. +|+..++........... ...-+...++|+|+.|.-.|......+..+
T Consensus 171 ~l~~k~vLvIGaGem~~l~a~~L~~~g~~~i~v~nRt~~~~~~~~~~---~~~~~~~~~~DvVIs~t~~Tas~~p~i~~~ 247 (338)
T PRK00676 171 KSKKASLLFIGYSEINRKVAYYLQRQGYSRITFCSRQQLTLPYRTVV---REELSFQDPYDVIFFGSSESAYAFPHLSWE 247 (338)
T ss_pred CccCCEEEEEcccHHHHHHHHHHHHcCCCEEEEEcCCccccchhhhh---hhhhhcccCCCEEEEcCCcCCCCCceeeHH
Confidence 4789999999999999999999999885 688888875211110000 011144678999998742222223345555
Q ss_pred HhccCCCceEEEEcc
Q 007512 273 TFGKMKKGVRIINVA 287 (600)
Q Consensus 273 ~l~~mk~gailvNva 287 (600)
.+...++ -+++|.+
T Consensus 248 ~~~~~~~-r~~iDLA 261 (338)
T PRK00676 248 SLADIPD-RIVFDFN 261 (338)
T ss_pred HHhhccC-cEEEEec
Confidence 5543332 3677765
|
|
| >cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.019 Score=60.40 Aligned_cols=93 Identities=15% Similarity=0.166 Sum_probs=59.5
Q ss_pred CEEEEEecChhHHHHHHHhhcCC--CEEEEECCCCChhHHHHc---------CC--cc-cCHHHHhccCCEEEEecCCCc
Q 007512 198 KTLAVLGFGKVGSEVARRAKGLG--MHVIAHDPYAPADRARAI---------GV--DL-VSFDEAIATADFISLHMPLTP 263 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~g--~~V~~~d~~~~~~~a~~~---------g~--~~-~~l~ell~~aDvV~l~~Pl~~ 263 (600)
++|+|||.|.+|+.+|..|...| .+|..+|+......+... +. .. ..-.+.+++||+|+++.....
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~~~~~~~l~~aDIVIitag~~~ 80 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIKAGDYSDCKDADIVVITAGAPQ 80 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEEcCCHHHhCCCCEEEEccCCCC
Confidence 48999999999999999998777 489999987643222211 11 11 122245799999999997532
Q ss_pred ccccc-----c--cH-------hHhccCCCceEEEEccCCcccc
Q 007512 264 ATSKV-----L--ND-------ETFGKMKKGVRIINVARGGVID 293 (600)
Q Consensus 264 ~t~~l-----i--~~-------~~l~~mk~gailvNvarg~ivd 293 (600)
..++ + |. +.+.+..|.+++++++ ..+|
T Consensus 81 -~~g~~R~dll~~N~~i~~~~~~~i~~~~~~~~vivvs--NP~d 121 (306)
T cd05291 81 -KPGETRLDLLEKNAKIMKSIVPKIKASGFDGIFLVAS--NPVD 121 (306)
T ss_pred -CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEec--ChHH
Confidence 1121 1 11 1233356788888886 4445
|
L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine |
| >cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein) | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.018 Score=47.27 Aligned_cols=59 Identities=15% Similarity=0.225 Sum_probs=44.4
Q ss_pred EEEEEecCCCCChhhHHhhhhcCCccccceEeeeecCCCcEEEEEEeC----CCCcHHHHHHHhc
Q 007512 528 IILCRQVDQPGMIGTVGSILGSENVNVSFMSVGRVAPRKHAVMAIGVD----EQPRKETLKKIGD 588 (600)
Q Consensus 528 ~Liv~~~D~pG~Ia~V~~iL~~~~INIa~m~v~R~~~g~~al~~i~~D----~~~~~~~l~~l~~ 588 (600)
.+.+..+|+||+++.|+.+|.++++||....+... ++.++-.+.+. .+.+++.+++|++
T Consensus 3 ri~V~~~D~~Gll~~i~~~l~~~~lnI~sa~i~t~--~~~~~d~f~v~~~~~~~~~~~~~~~l~~ 65 (72)
T cd04926 3 RLELRTEDRVGLLSDVTRVFRENGLTVTRAEISTQ--GDMAVNVFYVTDANGNPVDPKTIEAVRQ 65 (72)
T ss_pred EEEEEECCccCHHHHHHHHHHHCCcEEEEEEEecC--CCeEEEEEEEECCCCCcCCHHHHHHHHH
Confidence 56778899999999999999999999999988643 44666666652 2234456666654
|
This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains. |
| >PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.052 Score=55.44 Aligned_cols=106 Identities=32% Similarity=0.456 Sum_probs=70.6
Q ss_pred eccCCEEEEEecChhHHHHHHHhhcCCCEEEEE--------CCCC-ChhHH----HHcCC--c-----------ccCHH-
Q 007512 194 SLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAH--------DPYA-PADRA----RAIGV--D-----------LVSFD- 246 (600)
Q Consensus 194 ~l~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~--------d~~~-~~~~a----~~~g~--~-----------~~~l~- 246 (600)
.+.|+++.|=|+|.+|+.+|+.|...|++|++. ||.. +.+.. .+.+. . +.+-+
T Consensus 29 ~l~g~~v~IqGfG~VG~~~a~~l~~~Ga~vv~vsD~~G~i~~~~Gld~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 108 (244)
T PF00208_consen 29 SLEGKRVAIQGFGNVGSHAARFLAELGAKVVAVSDSSGAIYDPDGLDVEELLRIKEERGSRVDDYPLESPDGAEYIPNDD 108 (244)
T ss_dssp SSTTCEEEEEESSHHHHHHHHHHHHTTEEEEEEEESSEEEEETTEEHHHHHHHHHHHHSSHSTTGTHTCSSTSEEECHHC
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCceEEEcCCCchHHHHHHHHHHhCCcccccccccccceeEecccc
Confidence 699999999999999999999999999999885 6654 22211 12222 1 11222
Q ss_pred HHh-ccCCEEEEecCCCccccccccHhHhc-cCCCceEEEEcc-CCccccHHHHHHhHhcCCc
Q 007512 247 EAI-ATADFISLHMPLTPATSKVLNDETFG-KMKKGVRIINVA-RGGVIDEEALVRALDSGRV 306 (600)
Q Consensus 247 ell-~~aDvV~l~~Pl~~~t~~li~~~~l~-~mk~gailvNva-rg~ivde~aL~~aL~~g~i 306 (600)
+++ ..||+++.|.- .+.|+.+... .++.++.+|=-+ -+.+ ..++.. .|.+..|
T Consensus 109 ~il~~~~DiliP~A~-----~~~I~~~~~~~~i~~~akiIvegAN~p~-t~~a~~-~L~~rGI 164 (244)
T PF00208_consen 109 EILSVDCDILIPCAL-----GNVINEDNAPSLIKSGAKIIVEGANGPL-TPEADE-ILRERGI 164 (244)
T ss_dssp HGGTSSSSEEEEESS-----STSBSCHHHCHCHHTT-SEEEESSSSSB-SHHHHH-HHHHTT-
T ss_pred ccccccccEEEEcCC-----CCeeCHHHHHHHHhccCcEEEeCcchhc-cHHHHH-HHHHCCC
Confidence 555 58999999853 4557888777 777776666554 5555 444443 5666555
|
They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C .... |
| >TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.02 Score=62.75 Aligned_cols=89 Identities=25% Similarity=0.369 Sum_probs=64.1
Q ss_pred eccCCEEEEEec----------ChhHHHHHHHhhcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEecCCCc
Q 007512 194 SLVGKTLAVLGF----------GKVGSEVARRAKGLGMHVIAHDPYAPADRARAIGVDLVSFDEAIATADFISLHMPLTP 263 (600)
Q Consensus 194 ~l~gktiGIIGl----------G~IG~~vA~~l~~~g~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Pl~~ 263 (600)
.+.|++|+|+|+ ..-...+++.|...|.+|.+|||....+.....+ ...++++.++.||+|+++++-.+
T Consensus 310 ~~~~~~v~vlGlafK~~t~d~r~sp~~~~~~~L~~~g~~v~~~DP~~~~~~~~~~~-~~~~~~~~~~~ad~~v~~t~~~~ 388 (411)
T TIGR03026 310 PLKGKTVLILGLAFKPNTDDVRESPALDIIELLKEKGAKVKAYDPLVPEEEVKGLP-LIDDLEEALKGADALVILTDHDE 388 (411)
T ss_pred cccCCEEEEEeeEecCCCCccccChHHHHHHHHHhCCCEEEEECCCCChhhhhhcc-cCCCHHHHHhCCCEEEEecCCHH
Confidence 689999999998 4467789999999999999999997543322222 13578899999999999998433
Q ss_pred cccccccHhHhc-cCCCceEEEEc
Q 007512 264 ATSKVLNDETFG-KMKKGVRIINV 286 (600)
Q Consensus 264 ~t~~li~~~~l~-~mk~gailvNv 286 (600)
-+. ++-+.+. .|+ ..+++|+
T Consensus 389 -~~~-~~~~~~~~~~~-~~~v~D~ 409 (411)
T TIGR03026 389 -FKD-LDLEKIKDLMK-GKVVVDT 409 (411)
T ss_pred -Hhc-cCHHHHHHhcC-CCEEEeC
Confidence 222 3434443 354 4578884
|
All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively. |
| >cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.0051 Score=52.39 Aligned_cols=61 Identities=21% Similarity=0.192 Sum_probs=45.2
Q ss_pred cEEEEEecCCCCChhhHHhhhhcCCccccceEeeeecCCCcEEEEEEeCCCC----cHHHHHHHhcC
Q 007512 527 SIILCRQVDQPGMIGTVGSILGSENVNVSFMSVGRVAPRKHAVMAIGVDEQP----RKETLKKIGDV 589 (600)
Q Consensus 527 ~~Liv~~~D~pG~Ia~V~~iL~~~~INIa~m~v~R~~~g~~al~~i~~D~~~----~~~~l~~l~~~ 589 (600)
+.+.+.-+|+||+++.|++.|+++|+||..++... .++.-.|.+.++-+. ..++.+.+..+
T Consensus 2 ~vl~i~g~D~pGiva~vt~~la~~g~nI~~~~~~~--~~~~f~~~~~v~~~~~~~~~~~L~~~l~~l 66 (88)
T cd04872 2 AVITVVGKDRVGIVAGVSTKLAELNVNILDISQTI--MDGYFTMIMIVDISESNLDFAELQEELEEL 66 (88)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHcCCCEEechhHh--hCCccEEEEEEEeCCCCCCHHHHHHHHHHH
Confidence 34567789999999999999999999999998874 456677777766543 23444444444
|
This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains. |
| >PRK13303 L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.019 Score=59.25 Aligned_cols=65 Identities=23% Similarity=0.273 Sum_probs=44.3
Q ss_pred CEEEEEecChhHHHHHHHhhcC-CCEEEE-ECCCCChhH-HHHc--CCc-ccCHHHHhccCCEEEEecCCC
Q 007512 198 KTLAVLGFGKVGSEVARRAKGL-GMHVIA-HDPYAPADR-ARAI--GVD-LVSFDEAIATADFISLHMPLT 262 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~-g~~V~~-~d~~~~~~~-a~~~--g~~-~~~l~ell~~aDvV~l~~Pl~ 262 (600)
.+|||||+|.||+.+++.+... ++++.+ +++...... .... ++. ..+++++-.+.|+|+.|+|..
T Consensus 2 ~rVgIiG~G~iG~~~~~~l~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~DvVve~t~~~ 72 (265)
T PRK13303 2 MKVAMIGFGAIGAAVLELLEHDPDLRVDWVIVPEHSIDAVRRALGEAVRVVSSVDALPQRPDLVVECAGHA 72 (265)
T ss_pred cEEEEECCCHHHHHHHHHHhhCCCceEEEEEEcCCCHHHHhhhhccCCeeeCCHHHhccCCCEEEECCCHH
Confidence 4899999999999999999865 566544 344332222 1212 343 346888755699999999943
|
|
| >PRK07589 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.019 Score=61.57 Aligned_cols=88 Identities=26% Similarity=0.273 Sum_probs=61.7
Q ss_pred CCEEEEEecChhHHHHHHHhh-cCC-CEEEEECCCCCh-h-HH---HHcCCc---ccCHHHHhccCCEEEEecCCCcccc
Q 007512 197 GKTLAVLGFGKVGSEVARRAK-GLG-MHVIAHDPYAPA-D-RA---RAIGVD---LVSFDEAIATADFISLHMPLTPATS 266 (600)
Q Consensus 197 gktiGIIGlG~IG~~vA~~l~-~~g-~~V~~~d~~~~~-~-~a---~~~g~~---~~~l~ell~~aDvV~l~~Pl~~~t~ 266 (600)
-++++|||.|..++.-++.+. -+. -+|.+|++.... + .+ .+.+++ ..++++++++||+|+.++|.+. ..
T Consensus 129 a~~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~~r~~~~a~~~~~~~~~~~~~v~~~~~~~~av~~ADIIvtaT~S~~-~~ 207 (346)
T PRK07589 129 SRTMALIGNGAQSEFQALAFKALLGIEEIRLYDIDPAATAKLARNLAGPGLRIVACRSVAEAVEGADIITTVTADKT-NA 207 (346)
T ss_pred CcEEEEECCcHHHHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEecCCCC-CC
Confidence 468999999999999888776 344 489999988632 1 11 222433 2479999999999999998432 22
Q ss_pred ccccHhHhccCCCceEEEEccC
Q 007512 267 KVLNDETFGKMKKGVRIINVAR 288 (600)
Q Consensus 267 ~li~~~~l~~mk~gailvNvar 288 (600)
-++..+ .+|||+.|.-+|.
T Consensus 208 Pvl~~~---~lkpG~hV~aIGs 226 (346)
T PRK07589 208 TILTDD---MVEPGMHINAVGG 226 (346)
T ss_pred ceecHH---HcCCCcEEEecCC
Confidence 445554 3589988777764
|
|
| >PRK08291 ectoine utilization protein EutC; Validated | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.03 Score=59.68 Aligned_cols=82 Identities=22% Similarity=0.249 Sum_probs=58.1
Q ss_pred CCEEEEEecChhHHHHHHHhhc-CC-CEEEEECCCCCh-hH-HH----HcCCc---ccCHHHHhccCCEEEEecCCCccc
Q 007512 197 GKTLAVLGFGKVGSEVARRAKG-LG-MHVIAHDPYAPA-DR-AR----AIGVD---LVSFDEAIATADFISLHMPLTPAT 265 (600)
Q Consensus 197 gktiGIIGlG~IG~~vA~~l~~-~g-~~V~~~d~~~~~-~~-a~----~~g~~---~~~l~ell~~aDvV~l~~Pl~~~t 265 (600)
.++++|||.|.+|+..+..+.. .+ -+|..|+++... +. +. ..|+. ..++++++.+||+|+.++|..
T Consensus 132 ~~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~~~~a~~l~~~~~~~~g~~v~~~~d~~~al~~aDiVi~aT~s~--- 208 (330)
T PRK08291 132 ASRAAVIGAGEQARLQLEALTLVRPIREVRVWARDAAKAEAYAADLRAELGIPVTVARDVHEAVAGADIIVTTTPSE--- 208 (330)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHhhccCceEEEeCCHHHHHccCCEEEEeeCCC---
Confidence 5799999999999999888874 55 479999987632 21 22 12444 247889999999999999854
Q ss_pred cccccHhHhccCCCceEEE
Q 007512 266 SKVLNDETFGKMKKGVRII 284 (600)
Q Consensus 266 ~~li~~~~l~~mk~gailv 284 (600)
..++..+. +++|+.+.
T Consensus 209 ~p~i~~~~---l~~g~~v~ 224 (330)
T PRK08291 209 EPILKAEW---LHPGLHVT 224 (330)
T ss_pred CcEecHHH---cCCCceEE
Confidence 34555443 56776543
|
|
| >COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.047 Score=58.82 Aligned_cols=102 Identities=17% Similarity=0.177 Sum_probs=70.9
Q ss_pred CEEEEEecChhHHHHHHHhhcCCCEEEEECCCCChhHHHHcCC---------------------cc-cCHHHHhccCCEE
Q 007512 198 KTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPADRARAIGV---------------------DL-VSFDEAIATADFI 255 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~~~~a~~~g~---------------------~~-~~l~ell~~aDvV 255 (600)
++|.|||.|-+|-..+..+..+|.+|+.+|.....-.....|. .. .+.++.++++|++
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~GHeVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~~gRl~fTtd~~~a~~~adv~ 80 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAELGHEVVCVDIDESKVELLNKGISPIYEPGLEELLKENLASGRLRFTTDYEEAVKDADVV 80 (414)
T ss_pred CceEEECCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhccccCcEEEEcCHHHHHhcCCEE
Confidence 5799999999999999999999999999986543222222221 11 3677889999999
Q ss_pred EEecCCCccccccccHh--------HhccCCCceEEEEccCCccccHHHHHH
Q 007512 256 SLHMPLTPATSKVLNDE--------TFGKMKKGVRIINVARGGVIDEEALVR 299 (600)
Q Consensus 256 ~l~~Pl~~~t~~li~~~--------~l~~mk~gailvNvarg~ivde~aL~~ 299 (600)
++|+|..+...+-++-. ....++..+++|+=+.-.+=..+.+.+
T Consensus 81 fIavgTP~~~dg~aDl~~V~ava~~i~~~~~~~~vvV~KSTVPvGt~~~v~~ 132 (414)
T COG1004 81 FIAVGTPPDEDGSADLSYVEAVAKDIGEILDGKAVVVIKSTVPVGTTEEVRA 132 (414)
T ss_pred EEEcCCCCCCCCCccHHHHHHHHHHHHhhcCCCeEEEEcCCCCCCchHHHHH
Confidence 99999555434444332 344577669999988755544444443
|
|
| >PLN02353 probable UDP-glucose 6-dehydrogenase | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.041 Score=61.46 Aligned_cols=101 Identities=24% Similarity=0.329 Sum_probs=70.4
Q ss_pred eeccCCEEEEEec----------ChhHHHHHHHhhcCCCEEEEECCCCChhHHH-Hc----------------------C
Q 007512 193 VSLVGKTLAVLGF----------GKVGSEVARRAKGLGMHVIAHDPYAPADRAR-AI----------------------G 239 (600)
Q Consensus 193 ~~l~gktiGIIGl----------G~IG~~vA~~l~~~g~~V~~~d~~~~~~~a~-~~----------------------g 239 (600)
..+.|++|+|+|+ ..-...+++.|...|.+|.+|||....+... .. +
T Consensus 320 ~~~~~~~VavlGlafK~~tdD~R~Spa~~li~~L~~~G~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (473)
T PLN02353 320 NTVSGKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEEQIQRDLSMNKFDWDHPRHLQPMSPTAVKQ 399 (473)
T ss_pred cccCCCEEEEEeeeecCCCCccccChHHHHHHHHHhCCCEEEEECCCCChHHHHHHhhcccccccccccccccccccccc
Confidence 3589999999998 4577889999999999999999997443221 11 1
Q ss_pred Cccc-CHHHHhccCCEEEEecCCCccccccccHh-HhccCCCceEEEEccCCccccHHHH
Q 007512 240 VDLV-SFDEAIATADFISLHMPLTPATSKVLNDE-TFGKMKKGVRIINVARGGVIDEEAL 297 (600)
Q Consensus 240 ~~~~-~l~ell~~aDvV~l~~Pl~~~t~~li~~~-~l~~mk~gailvNvarg~ivde~aL 297 (600)
+.+. ++.+.++.||+|+++++-. +-+.+ +-+ ....|++..+|+|+ |+ +++.+.+
T Consensus 400 ~~~~~~~~~a~~~aD~vvi~t~~~-ef~~l-~~~~~~~~m~~~~~viD~-rn-~l~~~~~ 455 (473)
T PLN02353 400 VSVVWDAYEATKGAHGICILTEWD-EFKTL-DYQKIYDNMQKPAFVFDG-RN-VLDHEKL 455 (473)
T ss_pred eeeeCCHHHHhcCCCEEEECCCCh-Hhccc-CHHHHHHhccCCCEEEEC-CC-CCCHHHH
Confidence 1222 5678999999999999844 33333 333 34557766689995 43 4466655
|
|
| >PLN02477 glutamate dehydrogenase | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.14 Score=56.15 Aligned_cols=107 Identities=28% Similarity=0.345 Sum_probs=68.5
Q ss_pred ceeccCCEEEEEecChhHHHHHHHhhcCCCEEEE-ECC-------CC-ChhHHHH----c-------CCcccCHHHH-hc
Q 007512 192 GVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIA-HDP-------YA-PADRARA----I-------GVDLVSFDEA-IA 250 (600)
Q Consensus 192 g~~l~gktiGIIGlG~IG~~vA~~l~~~g~~V~~-~d~-------~~-~~~~a~~----~-------g~~~~~l~el-l~ 250 (600)
|.++.|++|.|.|+|++|+.+|+.|...|.+|++ .|. .- +.+...+ . +.+.++.+++ ..
T Consensus 201 g~~l~g~~VaIqGfGnVG~~~A~~L~e~GakVVaVsD~~G~iy~~~GLD~~~L~~~k~~~g~l~~~~~a~~i~~~e~l~~ 280 (410)
T PLN02477 201 GKSIAGQTFVIQGFGNVGSWAAQLIHEKGGKIVAVSDITGAVKNENGLDIPALRKHVAEGGGLKGFPGGDPIDPDDILVE 280 (410)
T ss_pred CCCccCCEEEEECCCHHHHHHHHHHHHcCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCchhccccceEecCccceec
Confidence 5588999999999999999999999999999995 343 22 2222111 0 1122233333 34
Q ss_pred cCCEEEEecCCCccccccccHhHhccCCCceEEEEccCCccccHHHHHHhHhcCCc
Q 007512 251 TADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVIDEEALVRALDSGRV 306 (600)
Q Consensus 251 ~aDvV~l~~Pl~~~t~~li~~~~l~~mk~gailvNvarg~ivde~aL~~aL~~g~i 306 (600)
.||+++-|. ..+.|+++...+++ -.+|+-.+-+++ ..++ -+.|.+..|
T Consensus 281 ~~DvliP~A-----l~~~I~~~na~~i~-ak~I~egAN~p~-t~ea-~~~L~~rGI 328 (410)
T PLN02477 281 PCDVLIPAA-----LGGVINKENAADVK-AKFIVEAANHPT-DPEA-DEILRKKGV 328 (410)
T ss_pred cccEEeecc-----ccccCCHhHHHHcC-CcEEEeCCCCCC-CHHH-HHHHHHCCc
Confidence 788887776 34567887777764 345666667776 4433 345665544
|
|
| >TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.016 Score=62.23 Aligned_cols=90 Identities=19% Similarity=0.293 Sum_probs=58.3
Q ss_pred CEEEEEec-ChhHHHHHHHhhcC-CCEEEE-ECCCCCh-h-HHHHc----C-----CcccCHHHHhccCCEEEEecCCCc
Q 007512 198 KTLAVLGF-GKVGSEVARRAKGL-GMHVIA-HDPYAPA-D-RARAI----G-----VDLVSFDEAIATADFISLHMPLTP 263 (600)
Q Consensus 198 ktiGIIGl-G~IG~~vA~~l~~~-g~~V~~-~d~~~~~-~-~a~~~----g-----~~~~~l~ell~~aDvV~l~~Pl~~ 263 (600)
++|+|+|. |.+|+.+++.|..+ +.++.. ++++.+. + ..... + +...+.++++.++|+|++|+|..
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~sagk~~~~~~~~l~~~~~~~~~~~~~~~~~~~~DvVf~alP~~- 79 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRESAGKPVSEVHPHLRGLVDLNLEPIDEEEIAEDADVVFLALPHG- 79 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccchhcCCChHHhCccccccCCceeecCCHHHhhcCCCEEEECCCch-
Confidence 47999998 99999999999987 788884 4654311 1 11111 1 11124566667899999999943
Q ss_pred cccccccHhHhcc-CCCceEEEEccCCcccc
Q 007512 264 ATSKVLNDETFGK-MKKGVRIINVARGGVID 293 (600)
Q Consensus 264 ~t~~li~~~~l~~-mk~gailvNvarg~ivd 293 (600)
.. .+.... .+.|+.+||.+..-=++
T Consensus 80 ~s-----~~~~~~~~~~G~~VIDlS~~fR~~ 105 (346)
T TIGR01850 80 VS-----AELAPELLAAGVKVIDLSADFRLK 105 (346)
T ss_pred HH-----HHHHHHHHhCCCEEEeCChhhhcC
Confidence 22 333332 35789999998543344
|
This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons. |
| >PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.016 Score=62.04 Aligned_cols=32 Identities=22% Similarity=0.413 Sum_probs=26.5
Q ss_pred CEEEEEecChhHHHHHHHhhcC-CCEEEEE-CCC
Q 007512 198 KTLAVLGFGKVGSEVARRAKGL-GMHVIAH-DPY 229 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~-g~~V~~~-d~~ 229 (600)
.+|||+|+|+||+.+++.+... ++++.+. |+.
T Consensus 2 ikVaI~G~GrIGr~va~al~~~~d~eLvav~d~~ 35 (341)
T PRK04207 2 IKVGVNGYGTIGKRVADAVAAQPDMELVGVAKTK 35 (341)
T ss_pred eEEEEECCCHHHHHHHHHHhcCCCcEEEEEECCC
Confidence 3799999999999999998855 7998874 543
|
|
| >PRK03515 ornithine carbamoyltransferase subunit I; Provisional | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.071 Score=56.96 Aligned_cols=98 Identities=24% Similarity=0.226 Sum_probs=65.3
Q ss_pred HhCCceeecCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCccccccccc-eeccCCEEEEEecC--hhHHHHHHHhh
Q 007512 141 TEFGCLVVNAPTANTVAAAEHGIALLAAMARNVAQADASVKAGKWQRNKYVG-VSLVGKTLAVLGFG--KVGSEVARRAK 217 (600)
Q Consensus 141 ~~~GI~V~n~p~~~~~~vAE~~l~lll~~~R~i~~~~~~~~~g~W~~~~~~g-~~l~gktiGIIGlG--~IG~~vA~~l~ 217 (600)
...+|+|+|+-+...-++ .+++=++.+.++ .| ..+.|.+|++||-+ ++..+++..+.
T Consensus 119 ~~~~vPVINa~~~~~HPt--QaLaDl~Ti~e~------------------~g~~~l~g~~ia~vGD~~~~v~~Sl~~~~~ 178 (336)
T PRK03515 119 EYAGVPVWNGLTNEFHPT--QLLADLLTMQEH------------------LPGKAFNEMTLAYAGDARNNMGNSLLEAAA 178 (336)
T ss_pred HhCCCCEEECCCCCCChH--HHHHHHHHHHHH------------------hCCCCcCCCEEEEeCCCcCcHHHHHHHHHH
Confidence 345689999865443333 233333333321 12 24789999999976 68999999999
Q ss_pred cCCCEEEEECCCC--Chh--------HHHHcCCc---ccCHHHHhccCCEEEEe
Q 007512 218 GLGMHVIAHDPYA--PAD--------RARAIGVD---LVSFDEAIATADFISLH 258 (600)
Q Consensus 218 ~~g~~V~~~d~~~--~~~--------~a~~~g~~---~~~l~ell~~aDvV~l~ 258 (600)
.+|+++....|.. +.. .+...|.. ..++++.+++||+|..-
T Consensus 179 ~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~i~~~~d~~ea~~~aDvvytd 232 (336)
T PRK03515 179 LTGLDLRLVAPKACWPEAALVTECRALAQKNGGNITLTEDIAEGVKGADFIYTD 232 (336)
T ss_pred HcCCEEEEECCchhcCcHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEec
Confidence 9999999987754 211 12334543 24899999999999884
|
|
| >PRK06223 malate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.032 Score=58.59 Aligned_cols=62 Identities=23% Similarity=0.375 Sum_probs=44.1
Q ss_pred CEEEEEecChhHHHHHHHhhcCCC-EEEEECCCCChhHHHHc---------CC--c--c-cCHHHHhccCCEEEEecC
Q 007512 198 KTLAVLGFGKVGSEVARRAKGLGM-HVIAHDPYAPADRARAI---------GV--D--L-VSFDEAIATADFISLHMP 260 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~g~-~V~~~d~~~~~~~a~~~---------g~--~--~-~~l~ell~~aDvV~l~~P 260 (600)
++|+|||.|.+|..+|..+...|. +|..||.......+... +. . . .+. +.+++||+|++++.
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~-~~~~~aDiVii~~~ 79 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELGDVVLFDIVEGVPQGKALDIAEAAPVEGFDTKITGTNDY-EDIAGSDVVVITAG 79 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCchhHHHHHHHHhhhhhcCCCcEEEeCCCH-HHHCCCCEEEECCC
Confidence 589999999999999999986554 99999986532222111 11 1 1 245 45899999999964
|
|
| >PRK00856 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.093 Score=55.36 Aligned_cols=63 Identities=22% Similarity=0.264 Sum_probs=48.5
Q ss_pred eccCCEEEEEec---ChhHHHHHHHhhcCCCEEEEECCCC-ChhHHHHcCCc-ccCHHHHhccCCEEEEe
Q 007512 194 SLVGKTLAVLGF---GKVGSEVARRAKGLGMHVIAHDPYA-PADRARAIGVD-LVSFDEAIATADFISLH 258 (600)
Q Consensus 194 ~l~gktiGIIGl---G~IG~~vA~~l~~~g~~V~~~d~~~-~~~~a~~~g~~-~~~l~ell~~aDvV~l~ 258 (600)
.+.|++|++||- +++..+++..+..||+++....|.. .+.. . ..+. ..++++.+++||+|..-
T Consensus 153 ~l~g~kv~~vGD~~~~~v~~Sl~~~~~~~g~~~~~~~P~~~~~~~-~-~~~~~~~d~~ea~~~aDvvyt~ 220 (305)
T PRK00856 153 RLEGLKVAIVGDIKHSRVARSNIQALTRLGAEVRLIAPPTLLPEG-M-PEYGVHTDLDEVIEDADVVMML 220 (305)
T ss_pred CCCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEECCcccCccc-c-cceEEECCHHHHhCCCCEEEEC
Confidence 377999999998 5899999999999999999988754 2111 0 0112 34899999999999774
|
|
| >PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2 | Back alignment and domain information |
|---|
Probab=95.86 E-value=0.08 Score=50.40 Aligned_cols=92 Identities=18% Similarity=0.274 Sum_probs=66.5
Q ss_pred cCCEEEEEe--cChhHHHHHHHhhcCCCEEEEECCCC---Ch--h-------HHHHcCC--cc-cCHHHHhccCCEEEEe
Q 007512 196 VGKTLAVLG--FGKVGSEVARRAKGLGMHVIAHDPYA---PA--D-------RARAIGV--DL-VSFDEAIATADFISLH 258 (600)
Q Consensus 196 ~gktiGIIG--lG~IG~~vA~~l~~~g~~V~~~d~~~---~~--~-------~a~~~g~--~~-~~l~ell~~aDvV~l~ 258 (600)
.|+||++|| -+++..+++..+..||+++..+.|.. +. + .+...|. .. .++++.+++||+|..-
T Consensus 1 ~gl~i~~vGD~~~rv~~Sl~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~e~l~~aDvvy~~ 80 (158)
T PF00185_consen 1 KGLKIAYVGDGHNRVAHSLIELLAKFGMEVVLIAPEGLRYPPDPEVLEKAKKNAKKNGGKITITDDIEEALKGADVVYTD 80 (158)
T ss_dssp TTEEEEEESSTTSHHHHHHHHHHHHTTSEEEEESSGGGGGSHHHHHHHHHHHHHHHHTTEEEEESSHHHHHTT-SEEEEE
T ss_pred CCCEEEEECCCCChHHHHHHHHHHHcCCEEEEECCCcccCCCCHHHHHHHHHHHHHhCCCeEEEeCHHHhcCCCCEEEEc
Confidence 489999999 38999999999999999999988765 22 1 1223343 22 4899999999999876
Q ss_pred cCC----Ccc-------ccccccHhHhccCCCceEEEEcc
Q 007512 259 MPL----TPA-------TSKVLNDETFGKMKKGVRIINVA 287 (600)
Q Consensus 259 ~Pl----~~~-------t~~li~~~~l~~mk~gailvNva 287 (600)
.-. .+. ....++++.++.+|++++|.-|.
T Consensus 81 ~~~s~~~~e~~~~~~~~~~y~v~~~~m~~a~~~~i~mH~L 120 (158)
T PF00185_consen 81 RWQSMGDKERFKRLEKFKPYQVTEELMERAKPDAIFMHPL 120 (158)
T ss_dssp SSSCTTSGGHHHHHHHHGGGSBSHHHHHTSSTT-EEEESS
T ss_pred CcccccchHHHHHHHHhcCCccCHHHHHhcCCCcEEEeCC
Confidence 553 110 11456888888889999999986
|
1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A .... |
| >PRK04284 ornithine carbamoyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.098 Score=55.83 Aligned_cols=127 Identities=18% Similarity=0.151 Sum_probs=80.0
Q ss_pred HhCCceeecCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCccccccccceeccCCEEEEEecC--hhHHHHHHHhhc
Q 007512 141 TEFGCLVVNAPTANTVAAAEHGIALLAAMARNVAQADASVKAGKWQRNKYVGVSLVGKTLAVLGFG--KVGSEVARRAKG 218 (600)
Q Consensus 141 ~~~GI~V~n~p~~~~~~vAE~~l~lll~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktiGIIGlG--~IG~~vA~~l~~ 218 (600)
....|+|+|+-+...-++ .+++=++.+.+++ .| .+.|++|++||-+ ++.++.+..+..
T Consensus 119 ~~s~vPVINa~~~~~HPt--QaL~Dl~Ti~e~~-----------------~g-~l~g~kia~vGD~~~~v~~Sl~~~~~~ 178 (332)
T PRK04284 119 EYSGVPVWNGLTDEDHPT--QVLADFLTAKEHL-----------------KK-PYKDIKFTYVGDGRNNVANALMQGAAI 178 (332)
T ss_pred HhCCCCEEECCCCCCChH--HHHHHHHHHHHHh-----------------cC-CcCCcEEEEecCCCcchHHHHHHHHHH
Confidence 345688999865444333 2333333333310 12 3779999999975 889999999999
Q ss_pred CCCEEEEECCCC--Chh--------HHHHcCCc---ccCHHHHhccCCEEEEecCC--Cc-----------cccccccHh
Q 007512 219 LGMHVIAHDPYA--PAD--------RARAIGVD---LVSFDEAIATADFISLHMPL--TP-----------ATSKVLNDE 272 (600)
Q Consensus 219 ~g~~V~~~d~~~--~~~--------~a~~~g~~---~~~l~ell~~aDvV~l~~Pl--~~-----------~t~~li~~~ 272 (600)
+|++|...-|.. +.+ .+...|.. ..++++.+++||+|..-.=. .. --...++++
T Consensus 179 ~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~ea~~~aDvvy~~~w~~~~~~~~~~~~~~~~~~~y~v~~e 258 (332)
T PRK04284 179 MGMDFHLVCPKELNPDDELLNKCKEIAAETGGKITITDDIDEGVKGSDVIYTDVWVSMGEPDEVWEERIKLLKPYQVNKE 258 (332)
T ss_pred cCCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEECCcccCccchhhHHHHHHhccCCcCCHH
Confidence 999999988753 211 12234542 24899999999999884210 00 012345667
Q ss_pred HhccCC-CceEEEEcc
Q 007512 273 TFGKMK-KGVRIINVA 287 (600)
Q Consensus 273 ~l~~mk-~gailvNva 287 (600)
.++.+| |+++|.-|.
T Consensus 259 ~l~~a~~~~~ivmHpl 274 (332)
T PRK04284 259 MMKKTGNPNAIFEHCL 274 (332)
T ss_pred HHhhcCCCCcEEECCC
Confidence 777775 477777774
|
|
| >PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.0088 Score=49.64 Aligned_cols=45 Identities=18% Similarity=0.330 Sum_probs=32.9
Q ss_pred EEecCCCCChhhHHhhhhcCCccccceEeeeecCCCcEEEEEEeC
Q 007512 531 CRQVDQPGMIGTVGSILGSENVNVSFMSVGRVAPRKHAVMAIGVD 575 (600)
Q Consensus 531 v~~~D~pG~Ia~V~~iL~~~~INIa~m~v~R~~~g~~al~~i~~D 575 (600)
+.-+|+||+++.|++.|+++|.||.+++..+....=..++.++.+
T Consensus 7 v~G~DrpGiv~~v~~~l~~~g~ni~d~~~~~~~~~f~~~~~v~~~ 51 (76)
T PF13740_consen 7 VVGPDRPGIVAAVTGVLAEHGCNIEDSRQAVLGGRFTLIMLVSIP 51 (76)
T ss_dssp EEEE--TTHHHHHHHHHHCTT-EEEEEEEEEETTEEEEEEEEEES
T ss_pred EEecCCCcHHHHHHHHHHHCCCcEEEEEEEEEcCeEEEEEEEEeC
Confidence 446999999999999999999999999998654333355666665
|
|
| >PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.021 Score=64.12 Aligned_cols=67 Identities=21% Similarity=0.193 Sum_probs=51.0
Q ss_pred ccCCEEEEEecChhHHHHHHHhhcCCCEEEEECCCCC-hhHHHHcCCccc---CHHHHhccCCEEEEecCC
Q 007512 195 LVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAP-ADRARAIGVDLV---SFDEAIATADFISLHMPL 261 (600)
Q Consensus 195 l~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~-~~~a~~~g~~~~---~l~ell~~aDvV~l~~Pl 261 (600)
+.|+++.|+|+|.+|.+.++.|+..|++|+++|.... ...+++.|+... ...+.+.++|+|+..-..
T Consensus 10 ~~~~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~~~~~~~l~~~g~~~~~~~~~~~~l~~~D~VV~SpGi 80 (488)
T PRK03369 10 LPGAPVLVAGAGVTGRAVLAALTRFGARPTVCDDDPDALRPHAERGVATVSTSDAVQQIADYALVVTSPGF 80 (488)
T ss_pred cCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHhCCCEEEcCcchHhHhhcCCEEEECCCC
Confidence 4689999999999999999999999999999996542 223455677543 234567889988876543
|
|
| >COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.025 Score=61.28 Aligned_cols=87 Identities=22% Similarity=0.218 Sum_probs=62.9
Q ss_pred CEEEEEecChhHHHHHHHhhcCC-CEEEEECCCC-ChhHHHHcC---Ccc--------cCHHHHhccCCEEEEecCCCcc
Q 007512 198 KTLAVLGFGKVGSEVARRAKGLG-MHVIAHDPYA-PADRARAIG---VDL--------VSFDEAIATADFISLHMPLTPA 264 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~g-~~V~~~d~~~-~~~~a~~~g---~~~--------~~l~ell~~aDvV~l~~Pl~~~ 264 (600)
++|.|||.|.||+.+|..|...| .+|+..|+.. ...++.... ++. ..+.+++++.|+|+.|+|..-
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li~~~d~VIn~~p~~~- 80 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQVDAADVDALVALIKDFDLVINAAPPFV- 80 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccccceeEEecccChHHHHHHHhcCCEEEEeCCchh-
Confidence 68999999999999999998887 9999999986 334443332 221 146789999999999999542
Q ss_pred ccccccHhHh-ccCCCceEEEEccCCc
Q 007512 265 TSKVLNDETF-GKMKKGVRIINVARGG 290 (600)
Q Consensus 265 t~~li~~~~l-~~mk~gailvNvarg~ 290 (600)
+...+ +.++-|.-.+|++-..
T Consensus 81 -----~~~i~ka~i~~gv~yvDts~~~ 102 (389)
T COG1748 81 -----DLTILKACIKTGVDYVDTSYYE 102 (389)
T ss_pred -----hHHHHHHHHHhCCCEEEcccCC
Confidence 22333 3467777777776433
|
|
| >TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.02 Score=56.74 Aligned_cols=37 Identities=24% Similarity=0.411 Sum_probs=34.0
Q ss_pred eeccCCEEEEEecChhHHHHHHHhhcCCC-EEEEECCC
Q 007512 193 VSLVGKTLAVLGFGKVGSEVARRAKGLGM-HVIAHDPY 229 (600)
Q Consensus 193 ~~l~gktiGIIGlG~IG~~vA~~l~~~g~-~V~~~d~~ 229 (600)
..|.+++|.|||+|.+|..+|+.|...|. ++..+|+.
T Consensus 17 ~kl~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d 54 (202)
T TIGR02356 17 QRLLNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD 54 (202)
T ss_pred HHhcCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence 46899999999999999999999999897 89999876
|
coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli. |
| >PRK13814 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.088 Score=55.63 Aligned_cols=63 Identities=11% Similarity=0.207 Sum_probs=48.1
Q ss_pred ccCCEEEEEec---ChhHHHHHHHhhcCCC-EEEEECCCC-ChhHHHHcCCcc-cCHHHHhccCCEEEE
Q 007512 195 LVGKTLAVLGF---GKVGSEVARRAKGLGM-HVIAHDPYA-PADRARAIGVDL-VSFDEAIATADFISL 257 (600)
Q Consensus 195 l~gktiGIIGl---G~IG~~vA~~l~~~g~-~V~~~d~~~-~~~~a~~~g~~~-~~l~ell~~aDvV~l 257 (600)
+.|.+|+++|= +++..++...+..+|+ +|....|.. .++......+.. .++++.++.||+|..
T Consensus 155 l~g~~va~vGD~~~~rv~~Sl~~~~a~~g~~~v~~~~P~~~~p~~~~~~~~~~~~d~~ea~~~aDvvy~ 223 (310)
T PRK13814 155 WNKLCVTIIGDIRHSRVANSLMDGLVTMGVPEIRLVGPSSLLPDKVGNDSIKKFTELKPSLLNSDVIVT 223 (310)
T ss_pred cCCcEEEEECCCCCCcHHHHHHHHHHHcCCCEEEEeCCcccCcCccccceEEEEcCHHHHhCCCCEEEE
Confidence 67899999998 5999999999999999 999888754 111111112333 478999999999987
|
|
| >cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.022 Score=58.56 Aligned_cols=112 Identities=20% Similarity=0.218 Sum_probs=67.0
Q ss_pred EEEEec-ChhHHHHHHHhhcCC----CEEEEECCCCChhHH--H-------Hc-CC--c-ccCHHHHhccCCEEEEecCC
Q 007512 200 LAVLGF-GKVGSEVARRAKGLG----MHVIAHDPYAPADRA--R-------AI-GV--D-LVSFDEAIATADFISLHMPL 261 (600)
Q Consensus 200 iGIIGl-G~IG~~vA~~l~~~g----~~V~~~d~~~~~~~a--~-------~~-g~--~-~~~l~ell~~aDvV~l~~Pl 261 (600)
|+|||. |.+|..+|..+...| .++..||.......+ . .. .. . ..++.+.+++||+|+++.-.
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~~~~d~~~~~~~aDiVv~t~~~ 80 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVSITDDPYEAFKDADVVIITAGV 80 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhccCcEEEECCchHHHhCCCCEEEECCCC
Confidence 589999 999999999987666 699999976522111 1 11 11 1 12567899999999996632
Q ss_pred Cc---ccc--------cccc--HhHhccCCCceEEEEccCCccccHH--HHHHh--HhcCCceEEE-Eec
Q 007512 262 TP---ATS--------KVLN--DETFGKMKKGVRIINVARGGVIDEE--ALVRA--LDSGRVAQAA-LDV 313 (600)
Q Consensus 262 ~~---~t~--------~li~--~~~l~~mk~gailvNvarg~ivde~--aL~~a--L~~g~i~ga~-lDv 313 (600)
.. .++ .++. .+.+.+..|+++++|++ ..+|.- .+.+. +...++.|.+ +|.
T Consensus 81 ~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~~i~~t--NP~d~~t~~~~~~sg~~~~kviG~~~ld~ 148 (263)
T cd00650 81 GRKPGMGRLDLLKRNVPIVKEIGDNIEKYSPDAWIIVVS--NPVDIITYLVWRYSGLPKEKVIGLGTLDP 148 (263)
T ss_pred CCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec--CcHHHHHHHHHHHhCCCchhEEEeecchH
Confidence 11 011 1110 01233345899999994 444532 33333 3445666766 654
|
Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains |
| >PLN02342 ornithine carbamoyltransferase | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.19 Score=53.99 Aligned_cols=130 Identities=19% Similarity=0.194 Sum_probs=82.3
Q ss_pred hhHHHhCCceeecCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCccccccccceeccCCEEEEEec-ChhHHHHHHH
Q 007512 137 LAAATEFGCLVVNAPTANTVAAAEHGIALLAAMARNVAQADASVKAGKWQRNKYVGVSLVGKTLAVLGF-GKVGSEVARR 215 (600)
Q Consensus 137 ~~aa~~~GI~V~n~p~~~~~~vAE~~l~lll~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktiGIIGl-G~IG~~vA~~ 215 (600)
.+.+..-+|+|+|+-+...-++ .+++=++.+.++ .| .+.|+||++||= .++-.+++..
T Consensus 155 ~~la~~~~vPVINA~~~~~HPt--QaLaDl~Ti~e~------------------~G-~l~glkva~vGD~~nva~Sli~~ 213 (348)
T PLN02342 155 LDLAEYSSVPVINGLTDYNHPC--QIMADALTIIEH------------------IG-RLEGTKVVYVGDGNNIVHSWLLL 213 (348)
T ss_pred HHHHHhCCCCEEECCCCCCChH--HHHHHHHHHHHH------------------hC-CcCCCEEEEECCCchhHHHHHHH
Confidence 3455667899999965443332 233333333321 12 477999999997 4688888888
Q ss_pred hhcCCCEEEEECCCC--C-hh---HHHHcCC---c-ccCHHHHhccCCEEEEec----CCCcc--------ccccccHhH
Q 007512 216 AKGLGMHVIAHDPYA--P-AD---RARAIGV---D-LVSFDEAIATADFISLHM----PLTPA--------TSKVLNDET 273 (600)
Q Consensus 216 l~~~g~~V~~~d~~~--~-~~---~a~~~g~---~-~~~l~ell~~aDvV~l~~----Pl~~~--------t~~li~~~~ 273 (600)
+..+|++|....|.. . .+ .+.+.|. . ..++++.++.||+|..-. -..++ ....++++.
T Consensus 214 ~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~~~d~~eav~~aDVvy~~~W~s~~~~e~~~~~~~~~~~y~vt~el 293 (348)
T PLN02342 214 AAVLPFHFVCACPKGYEPDAKTVEKARAAGISKIEITNDPAEAVKGADVVYTDVWASMGQKEEAEKRKKAFQGFQVNEAL 293 (348)
T ss_pred HHHcCCEEEEECCcccccCHHHHHHHHHhCCCcEEEEcCHHHHhCCCCEEEECCccccccchhhHHHHHhccCCccCHHH
Confidence 889999999887754 2 11 2333442 2 247899999999998753 11110 124456677
Q ss_pred hccCCCceEEEEcc
Q 007512 274 FGKMKKGVRIINVA 287 (600)
Q Consensus 274 l~~mk~gailvNva 287 (600)
++.+|++++|.-|.
T Consensus 294 l~~ak~~aivMHpL 307 (348)
T PLN02342 294 MKLAGPQAYFMHCL 307 (348)
T ss_pred HhccCCCcEEeCCC
Confidence 77777777777664
|
|
| >cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme | Back alignment and domain information |
|---|
Probab=95.66 E-value=0.037 Score=46.18 Aligned_cols=69 Identities=16% Similarity=0.194 Sum_probs=45.2
Q ss_pred EEEEEecCCCCChhhHHhhhhcCCccccceEeeeecC-CCcEEEEEEeCCCC-cH---HHHHHHhcCCCcceEEEe
Q 007512 528 IILCRQVDQPGMIGTVGSILGSENVNVSFMSVGRVAP-RKHAVMAIGVDEQP-RK---ETLKKIGDVPAIEEFVFL 598 (600)
Q Consensus 528 ~Liv~~~D~pG~Ia~V~~iL~~~~INIa~m~v~R~~~-g~~al~~i~~D~~~-~~---~~l~~l~~~~~v~~v~~i 598 (600)
.+.+..+|+||.++.+..++++++|||..+....... .......++++... .+ ++++.|+.. ..+++++
T Consensus 3 sl~~~~~d~~G~L~~il~~f~~~~ini~~i~s~p~~~~~~~~~f~vd~~~~~~~~~~~~~l~~l~~~--~~~~~~l 76 (80)
T cd04905 3 SIVFTLPNKPGALYDVLGVFAERGINLTKIESRPSKGGLWEYVFFIDFEGHIEDPNVAEALEELKRL--TEFVKVL 76 (80)
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCcCEEEEEEEEcCCCCceEEEEEEEECCCCCHHHHHHHHHHHHh--CCeEEEe
Confidence 4566778999999999999999999999997543322 22245556666542 22 455555542 3455543
|
The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi |
| >COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.025 Score=60.29 Aligned_cols=61 Identities=36% Similarity=0.445 Sum_probs=47.0
Q ss_pred CCEEEEEecChhHHHHHHHhhcCCCEEEEECCCCChhHHH-HcC-C--cc---cCHHHHhccCCEEEE
Q 007512 197 GKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPADRAR-AIG-V--DL---VSFDEAIATADFISL 257 (600)
Q Consensus 197 gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~~~~a~-~~g-~--~~---~~l~ell~~aDvV~l 257 (600)
++||||||-|-.|+.++..++.+|++|++.||......+. ... + .+ ..+.++.+.||+|+.
T Consensus 1 ~~tvgIlGGGQLgrMm~~aa~~lG~~v~vLdp~~~~PA~~va~~~i~~~~dD~~al~ela~~~DViT~ 68 (375)
T COG0026 1 MKTVGILGGGQLGRMMALAAARLGIKVIVLDPDADAPAAQVADRVIVAAYDDPEALRELAAKCDVITY 68 (375)
T ss_pred CCeEEEEcCcHHHHHHHHHHHhcCCEEEEecCCCCCchhhcccceeecCCCCHHHHHHHHhhCCEEEE
Confidence 4799999999999999999999999999999987322211 111 1 11 247899999999976
|
|
| >PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.029 Score=61.66 Aligned_cols=71 Identities=23% Similarity=0.193 Sum_probs=54.8
Q ss_pred ceeccCCEEEEEec----------ChhHHHHHHHhhcCC-CEEEEECCCCChhHH-HHcCCcccCHHHHhccCCEEEEec
Q 007512 192 GVSLVGKTLAVLGF----------GKVGSEVARRAKGLG-MHVIAHDPYAPADRA-RAIGVDLVSFDEAIATADFISLHM 259 (600)
Q Consensus 192 g~~l~gktiGIIGl----------G~IG~~vA~~l~~~g-~~V~~~d~~~~~~~a-~~~g~~~~~l~ell~~aDvV~l~~ 259 (600)
+..+.|++|+|+|+ ..-...+++.|+..| .+|.+|||....... ....+...++++.++.||+|++++
T Consensus 315 ~~~~~~~~v~vlGlafK~~t~d~r~Sp~~~l~~~L~~~gg~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~ad~vvi~t 394 (415)
T PRK11064 315 DKRASEVKIACFGLAFKPNIDDLRESPAMEIAELIAQWHSGETLVVEPNIHQLPKKLDGLVTLVSLDEALATADVLVMLV 394 (415)
T ss_pred ccCcCCCEEEEEeeEECCCCcchhhChHHHHHHHHHhcCCcEEEEECCCCCchhhhccCceeeCCHHHHHhCCCEEEECC
Confidence 55688999999998 456778999999985 999999998643211 111233468899999999999999
Q ss_pred CCC
Q 007512 260 PLT 262 (600)
Q Consensus 260 Pl~ 262 (600)
+-.
T Consensus 395 ~~~ 397 (415)
T PRK11064 395 DHS 397 (415)
T ss_pred CCH
Confidence 844
|
|
| >PRK08300 acetaldehyde dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=95.63 E-value=0.035 Score=58.24 Aligned_cols=86 Identities=19% Similarity=0.229 Sum_probs=59.4
Q ss_pred CCEEEEEecChhHHHHHHHhhcC-CCEEEE-ECCCCC---hhHHHHcCCcc--cCHHHHhc-----cCCEEEEecCCCcc
Q 007512 197 GKTLAVLGFGKVGSEVARRAKGL-GMHVIA-HDPYAP---ADRARAIGVDL--VSFDEAIA-----TADFISLHMPLTPA 264 (600)
Q Consensus 197 gktiGIIGlG~IG~~vA~~l~~~-g~~V~~-~d~~~~---~~~a~~~g~~~--~~l~ell~-----~aDvV~l~~Pl~~~ 264 (600)
..++||||.|.||...+..+... ++++.+ +|++.. ...+++.|+.. .+++++++ +.|+|+.++|...
T Consensus 4 klrVAIIGtG~IGt~hm~~l~~~~~velvAVvdid~es~gla~A~~~Gi~~~~~~ie~LL~~~~~~dIDiVf~AT~a~~- 82 (302)
T PRK08300 4 KLKVAIIGSGNIGTDLMIKILRSEHLEPGAMVGIDPESDGLARARRLGVATSAEGIDGLLAMPEFDDIDIVFDATSAGA- 82 (302)
T ss_pred CCeEEEEcCcHHHHHHHHHHhcCCCcEEEEEEeCChhhHHHHHHHHcCCCcccCCHHHHHhCcCCCCCCEEEECCCHHH-
Confidence 35899999999999977777644 677765 566542 24577788864 47888884 5899999998332
Q ss_pred ccccccHhHhccCCCceEEEEcc
Q 007512 265 TSKVLNDETFGKMKKGVRIINVA 287 (600)
Q Consensus 265 t~~li~~~~l~~mk~gailvNva 287 (600)
. -+......+.|+.++|-.
T Consensus 83 -H---~e~a~~a~eaGk~VID~s 101 (302)
T PRK08300 83 -H---VRHAAKLREAGIRAIDLT 101 (302)
T ss_pred -H---HHHHHHHHHcCCeEEECC
Confidence 1 111222357788888876
|
|
| >PRK11891 aspartate carbamoyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=95.63 E-value=0.15 Score=56.13 Aligned_cols=105 Identities=15% Similarity=0.160 Sum_probs=68.1
Q ss_pred hHHHhCCceeecCC-CCChHHHHHHHHHHHHHHHhchHHHHHHHHcCccccccccceeccCCEEEEEecC---hhHHHHH
Q 007512 138 AAATEFGCLVVNAP-TANTVAAAEHGIALLAAMARNVAQADASVKAGKWQRNKYVGVSLVGKTLAVLGFG---KVGSEVA 213 (600)
Q Consensus 138 ~aa~~~GI~V~n~p-~~~~~~vAE~~l~lll~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktiGIIGlG---~IG~~vA 213 (600)
+.+...+|+|+|+- |...-++ .+++=++.+..++ |. .|..+.|+||++||-+ ++..+++
T Consensus 198 e~A~~s~vPVINAgdg~~~HPt--QaLaDl~Ti~E~~---------g~------~g~~l~G~kIa~vGD~~~~rv~~Sl~ 260 (429)
T PRK11891 198 EFARATNLPVINGGDGPGEHPS--QALLDLYTIQREF---------SR------LGKIVDGAHIALVGDLKYGRTVHSLV 260 (429)
T ss_pred HHHHhCCCCEEECCCCCCCCcH--HHHHHHHHHHHHh---------Cc------cCCCcCCCEEEEECcCCCChHHHHHH
Confidence 45566789999987 4443332 2222233333211 11 1224789999999994 8999999
Q ss_pred HHhhcC-CCEEEEECCCC---Chh---HHHHcCCc---ccCHHHHhccCCEEEEec
Q 007512 214 RRAKGL-GMHVIAHDPYA---PAD---RARAIGVD---LVSFDEAIATADFISLHM 259 (600)
Q Consensus 214 ~~l~~~-g~~V~~~d~~~---~~~---~a~~~g~~---~~~l~ell~~aDvV~l~~ 259 (600)
..+..+ ||+|....|.. +.+ .+.+.|.. ..++++.+++||+|....
T Consensus 261 ~~la~~~G~~v~l~~P~~~~~~~~~~~~~~~~G~~v~~~~d~~eav~~ADVVYt~~ 316 (429)
T PRK11891 261 KLLALYRGLKFTLVSPPTLEMPAYIVEQISRNGHVIEQTDDLAAGLRGADVVYATR 316 (429)
T ss_pred HHHHHhcCCEEEEECCCccccCHHHHHHHHhcCCeEEEEcCHHHHhCCCCEEEEcC
Confidence 998876 99999887754 111 22333543 248999999999998843
|
|
| >PRK14804 ornithine carbamoyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.19 Score=53.25 Aligned_cols=100 Identities=20% Similarity=0.271 Sum_probs=66.7
Q ss_pred HHhCCceeecCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCccccccccce-eccCCEEEEEec-ChhHHHHHHHhh
Q 007512 140 ATEFGCLVVNAPTANTVAAAEHGIALLAAMARNVAQADASVKAGKWQRNKYVGV-SLVGKTLAVLGF-GKVGSEVARRAK 217 (600)
Q Consensus 140 a~~~GI~V~n~p~~~~~~vAE~~l~lll~~~R~i~~~~~~~~~g~W~~~~~~g~-~l~gktiGIIGl-G~IG~~vA~~l~ 217 (600)
+....|+|+|+-+...-++ .+++=++.+.+ ..|. .+.|++|++||- +++..+++..+.
T Consensus 115 a~~~~vPVINag~~~~HPt--QaL~Dl~Ti~e------------------~~g~~~l~g~~va~vGd~~rv~~Sl~~~~~ 174 (311)
T PRK14804 115 KNGSQVPVINGCDNMFHPC--QSLADIMTIAL------------------DSPEIPLNQKQLTYIGVHNNVVNSLIGITA 174 (311)
T ss_pred HHHCCCCEEECCCCCCChH--HHHHHHHHHHH------------------HhCCCCCCCCEEEEECCCCcHHHHHHHHHH
Confidence 3446789999876543332 22222332322 1233 478999999998 799999999999
Q ss_pred cCCCEEEEECCCCCh--------hHHHHcC-Cc-ccCHHHHhccCCEEEEec
Q 007512 218 GLGMHVIAHDPYAPA--------DRARAIG-VD-LVSFDEAIATADFISLHM 259 (600)
Q Consensus 218 ~~g~~V~~~d~~~~~--------~~a~~~g-~~-~~~l~ell~~aDvV~l~~ 259 (600)
.+|++|....|.... +.+.+.| +. ..++++.++.||+|..-+
T Consensus 175 ~~G~~v~~~~P~~~~~~~~~~~~~~~~~~g~i~~~~d~~~av~~aDvvy~d~ 226 (311)
T PRK14804 175 ALGIHLTLVTPIAAKENIHAQTVERAKKKGTLSWEMNLHKAVSHADYVYTDT 226 (311)
T ss_pred HcCCEEEEECCCCccHHHHHHHHHHHHhcCCeEEEeCHHHHhCCCCEEEeee
Confidence 999999999885521 1122233 23 248999999999998843
|
|
| >COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.60 E-value=0.018 Score=57.99 Aligned_cols=33 Identities=30% Similarity=0.476 Sum_probs=31.2
Q ss_pred CEEEEEecChhHHHHHHHhhcCCCEEEEECCCC
Q 007512 198 KTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYA 230 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~ 230 (600)
+++.|||+|..|+++|+.|...|++|+..|.+.
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~ 33 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDE 33 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCH
Confidence 579999999999999999999999999999876
|
|
| >TIGR00655 PurU formyltetrahydrofolate deformylase | Back alignment and domain information |
|---|
Probab=95.58 E-value=0.015 Score=60.50 Aligned_cols=50 Identities=14% Similarity=0.232 Sum_probs=43.3
Q ss_pred EEEEEecCCCCChhhHHhhhhcCCccccceEeeeecCCCcEEEEEEeCCC
Q 007512 528 IILCRQVDQPGMIGTVGSILGSENVNVSFMSVGRVAPRKHAVMAIGVDEQ 577 (600)
Q Consensus 528 ~Liv~~~D~pG~Ia~V~~iL~~~~INIa~m~v~R~~~g~~al~~i~~D~~ 577 (600)
.+.+.-+|+||+|+.|++.|+++|+||.+++-.....++.=.|++++|-+
T Consensus 2 ~itv~g~D~~GIVA~Vt~~La~~g~NI~d~sq~~~~~~~~F~mr~~v~~~ 51 (280)
T TIGR00655 2 ILLVSCPDQKGLVAAISTFIAKHGANIISNDQHTDPETGRFFMRVEFQLE 51 (280)
T ss_pred EEEEECCCCCChHHHHHHHHHHCCCCEEeeeEEEcCCCCeEEEEEEEEeC
Confidence 46677899999999999999999999999999877667787888888844
|
This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region. |
| >PRK02102 ornithine carbamoyltransferase; Validated | Back alignment and domain information |
|---|
Probab=95.58 E-value=0.14 Score=54.61 Aligned_cols=94 Identities=22% Similarity=0.268 Sum_probs=63.7
Q ss_pred eccCCEEEEEecC--hhHHHHHHHhhcCCCEEEEECCCC--Chh--------HHHHcCCc---ccCHHHHhccCCEEEEe
Q 007512 194 SLVGKTLAVLGFG--KVGSEVARRAKGLGMHVIAHDPYA--PAD--------RARAIGVD---LVSFDEAIATADFISLH 258 (600)
Q Consensus 194 ~l~gktiGIIGlG--~IG~~vA~~l~~~g~~V~~~d~~~--~~~--------~a~~~g~~---~~~l~ell~~aDvV~l~ 258 (600)
.+.|+||++||-+ ++..+++..+..+|++|....|.. ..+ .++..|.. ..++++++++||+|..-
T Consensus 152 ~l~g~~va~vGd~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~ea~~~aDvvyt~ 231 (331)
T PRK02102 152 PLKGLKLAYVGDGRNNMANSLMVGGAKLGMDVRICAPKELWPEEELVALAREIAKETGAKITITEDPEEAVKGADVIYTD 231 (331)
T ss_pred CCCCCEEEEECCCcccHHHHHHHHHHHcCCEEEEECCcccccCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEc
Confidence 3689999999997 789999999999999999887754 211 12334543 24799999999999884
Q ss_pred cCC--Ccc----------ccccccHhHhc-cCCCceEEEEcc
Q 007512 259 MPL--TPA----------TSKVLNDETFG-KMKKGVRIINVA 287 (600)
Q Consensus 259 ~Pl--~~~----------t~~li~~~~l~-~mk~gailvNva 287 (600)
+=. ..+ ...-++++.++ .+|++++|.-|.
T Consensus 232 ~w~~~~~~~~~~~~~~~~~~y~vt~ell~~~~~~d~ivmH~l 273 (331)
T PRK02102 232 VWVSMGEEDEWEERIKLLKPYQVNMDLMKATGNPDVIFMHCL 273 (331)
T ss_pred CcccCccccchHHHHHhccCCcCCHHHHhhhcCCCCEEECCC
Confidence 310 000 12234556666 366777766664
|
|
| >PRK00048 dihydrodipicolinate reductase; Provisional | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.026 Score=57.99 Aligned_cols=63 Identities=22% Similarity=0.319 Sum_probs=41.2
Q ss_pred CEEEEEec-ChhHHHHHHHhhcC-CCEEEE-ECCCCChh-HHHHcCCc-ccCHHHHhccCCEEEEecC
Q 007512 198 KTLAVLGF-GKVGSEVARRAKGL-GMHVIA-HDPYAPAD-RARAIGVD-LVSFDEAIATADFISLHMP 260 (600)
Q Consensus 198 ktiGIIGl-G~IG~~vA~~l~~~-g~~V~~-~d~~~~~~-~a~~~g~~-~~~l~ell~~aDvV~l~~P 260 (600)
.+|+|+|+ |+||+.+++.+... ++++.+ +|+..... .....++. ..+++++++.+|+|+.++|
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~~~~~~~i~~~~dl~~ll~~~DvVid~t~ 69 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVGQGALGVAITDDLEAVLADADVLIDFTT 69 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccccCCCCccccCCHHHhccCCCEEEECCC
Confidence 47999998 99999999998864 788776 77664211 11222332 2356666666676665554
|
|
| >PRK13010 purU formyltetrahydrofolate deformylase; Reviewed | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.022 Score=59.53 Aligned_cols=50 Identities=10% Similarity=0.167 Sum_probs=41.9
Q ss_pred ccEEEEEecCCCCChhhHHhhhhcCCccccceEeeeecCCCcEEEEEEeC
Q 007512 526 GSIILCRQVDQPGMIGTVGSILGSENVNVSFMSVGRVAPRKHAVMAIGVD 575 (600)
Q Consensus 526 ~~~Liv~~~D~pG~Ia~V~~iL~~~~INIa~m~v~R~~~g~~al~~i~~D 575 (600)
.+.+.+.-+|+||+|+.|++.|+++|+||.+++-......+.-+|.++++
T Consensus 9 ~~iitv~G~Dr~GIVA~Vs~~Lae~g~NI~disq~~d~~~~~ffm~i~~~ 58 (289)
T PRK13010 9 SYVLTLACPSAPGIVAAVSGFLAEKGCYIVELTQFDDDESGRFFMRVSFH 58 (289)
T ss_pred CEEEEEECCCCCCcHHHHHHHHHHCCCCEEecccccccccCcEEEEEEEE
Confidence 34677778999999999999999999999999987545566777887766
|
|
| >TIGR03316 ygeW probable carbamoyltransferase YgeW | Back alignment and domain information |
|---|
Probab=95.52 E-value=0.25 Score=53.28 Aligned_cols=65 Identities=26% Similarity=0.258 Sum_probs=48.0
Q ss_pred eccCCEEEEEecC--------hhHHHHHHHhhcCCCEEEEECCCC---Chh---H----HHHcCCc---ccCHHHHhccC
Q 007512 194 SLVGKTLAVLGFG--------KVGSEVARRAKGLGMHVIAHDPYA---PAD---R----ARAIGVD---LVSFDEAIATA 252 (600)
Q Consensus 194 ~l~gktiGIIGlG--------~IG~~vA~~l~~~g~~V~~~d~~~---~~~---~----a~~~g~~---~~~l~ell~~a 252 (600)
.+.|+||+|+|.| ++..+++..+..||++|....|.. ..+ . +.+.|.. ..++++.+++|
T Consensus 167 ~l~g~kvai~~~~d~~~gr~~~v~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~~~~~g~~~~~~~d~~ea~~~a 246 (357)
T TIGR03316 167 NLKGKKFAMTWAYSPSYGKPLSVPQGIIGLMTRFGMDVTLAHPEGYHLLPEVIEVAKKNAAENGGKFNIVNSMDEAFKDA 246 (357)
T ss_pred ccCCCEEEEEeccccccCccchHHHHHHHHHHHcCCEEEEECCCcccCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCC
Confidence 3789999999853 445788888889999999988753 221 1 2344643 24899999999
Q ss_pred CEEEEe
Q 007512 253 DFISLH 258 (600)
Q Consensus 253 DvV~l~ 258 (600)
|+|..-
T Consensus 247 Dvvyt~ 252 (357)
T TIGR03316 247 DIVYPK 252 (357)
T ss_pred CEEEEC
Confidence 999885
|
Members of this protein family include the ygeW gene product of Escherichia coli. The function is unknown. Members show homology to ornithine carbamoyltransferase (TIGR00658) and aspartate carbamoyltransferase (carbamoyltransferase), and therefore may belong to the carbamoyltransferases in function. Members often are found in a large, conserved genomic region associated with purine catabolism. |
| >PRK12562 ornithine carbamoyltransferase subunit F; Provisional | Back alignment and domain information |
|---|
Probab=95.48 E-value=0.22 Score=53.13 Aligned_cols=128 Identities=20% Similarity=0.190 Sum_probs=79.9
Q ss_pred HhCCceeecCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCccccccccceeccCCEEEEEecC--hhHHHHHHHhhc
Q 007512 141 TEFGCLVVNAPTANTVAAAEHGIALLAAMARNVAQADASVKAGKWQRNKYVGVSLVGKTLAVLGFG--KVGSEVARRAKG 218 (600)
Q Consensus 141 ~~~GI~V~n~p~~~~~~vAE~~l~lll~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktiGIIGlG--~IG~~vA~~l~~ 218 (600)
..-+|+|+|+-+...-++ .+++=++.+.++ +.|..+.|.+|++||-+ ++..+++..+..
T Consensus 119 ~~~~vPVINa~~~~~HPt--QaLaDl~Ti~e~-----------------~g~~~l~gl~va~vGD~~~~v~~S~~~~~~~ 179 (334)
T PRK12562 119 EYAGVPVWNGLTNEFHPT--QLLADLLTMQEH-----------------LPGKAFNEMTLVYAGDARNNMGNSMLEAAAL 179 (334)
T ss_pred HhCCCCEEECCCCCCChH--HHHHHHHHHHHH-----------------hCCCCcCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 334689999866443333 233333333321 11124789999999976 789999999999
Q ss_pred CCCEEEEECCCC--Chh----H----HHHcCCc---ccCHHHHhccCCEEEEecC----CC----cc-----ccccccHh
Q 007512 219 LGMHVIAHDPYA--PAD----R----ARAIGVD---LVSFDEAIATADFISLHMP----LT----PA-----TSKVLNDE 272 (600)
Q Consensus 219 ~g~~V~~~d~~~--~~~----~----a~~~g~~---~~~l~ell~~aDvV~l~~P----l~----~~-----t~~li~~~ 272 (600)
+|++|....|.. +.+ . +...|.. ..++++.++.||+|..-.= .. ++ -..-++.+
T Consensus 180 ~G~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvyt~~w~sm~~~~~~~~~~~~~~~~y~v~~e 259 (334)
T PRK12562 180 TGLDLRLVAPQACWPEASLVAECSALAQKHGGKITLTEDIAAGVKGADFIYTDVWVSMGEPKEKWAERIALLRGYQVNSK 259 (334)
T ss_pred cCCEEEEECCcccCCcHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEcCccccccchhhHHHHHHhccCCcCCHH
Confidence 999999887754 211 1 2233543 2489999999999988531 00 00 12335666
Q ss_pred HhccC-CCceEEEEcc
Q 007512 273 TFGKM-KKGVRIINVA 287 (600)
Q Consensus 273 ~l~~m-k~gailvNva 287 (600)
.++.. |++++|.-|.
T Consensus 260 ll~~a~~~~~i~mHcL 275 (334)
T PRK12562 260 MMALTGNPQVKFLHCL 275 (334)
T ss_pred HHHhhcCCCCEEECCC
Confidence 67664 6777777774
|
|
| >TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating) | Back alignment and domain information |
|---|
Probab=95.43 E-value=0.056 Score=56.44 Aligned_cols=85 Identities=18% Similarity=0.244 Sum_probs=57.5
Q ss_pred CEEEEEecChhHHHHHHHhhcC-CCEEEE-ECCCCC---hhHHHHcCCcc--cCHHHHhc--cCCEEEEecCCCcccccc
Q 007512 198 KTLAVLGFGKVGSEVARRAKGL-GMHVIA-HDPYAP---ADRARAIGVDL--VSFDEAIA--TADFISLHMPLTPATSKV 268 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~-g~~V~~-~d~~~~---~~~a~~~g~~~--~~l~ell~--~aDvV~l~~Pl~~~t~~l 268 (600)
.++||||.|.||+..+..+... ++++.+ +|++.. ...+++.|+.. .+.++++. +.|+|++++|... .
T Consensus 2 lrVAIIG~G~IG~~h~~~ll~~~~~elvaV~d~d~es~~la~A~~~Gi~~~~~~~e~ll~~~dIDaV~iaTp~~~--H-- 77 (285)
T TIGR03215 2 VKVAIIGSGNIGTDLMYKLLRSEHLEMVAMVGIDPESDGLARARELGVKTSAEGVDGLLANPDIDIVFDATSAKA--H-- 77 (285)
T ss_pred cEEEEEeCcHHHHHHHHHHHhCCCcEEEEEEeCCcccHHHHHHHHCCCCEEECCHHHHhcCCCCCEEEECCCcHH--H--
Confidence 3799999999999887776644 677765 566553 24577788753 36888885 5889999999332 1
Q ss_pred ccHhHhccCCCceEEEEcc
Q 007512 269 LNDETFGKMKKGVRIINVA 287 (600)
Q Consensus 269 i~~~~l~~mk~gailvNva 287 (600)
-+.....++.|..+++-.
T Consensus 78 -~e~a~~al~aGk~VIdek 95 (285)
T TIGR03215 78 -ARHARLLAELGKIVIDLT 95 (285)
T ss_pred -HHHHHHHHHcCCEEEECC
Confidence 111223356677776654
|
Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc. |
| >PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional | Back alignment and domain information |
|---|
Probab=95.41 E-value=0.073 Score=58.77 Aligned_cols=95 Identities=18% Similarity=0.254 Sum_probs=64.5
Q ss_pred ceeccCCEEEEEec----------ChhHHHHHHHhhcCCCEEEEECCCCChhHH-HHcCCcccCHHH-HhccCCEEEEec
Q 007512 192 GVSLVGKTLAVLGF----------GKVGSEVARRAKGLGMHVIAHDPYAPADRA-RAIGVDLVSFDE-AIATADFISLHM 259 (600)
Q Consensus 192 g~~l~gktiGIIGl----------G~IG~~vA~~l~~~g~~V~~~d~~~~~~~a-~~~g~~~~~l~e-ll~~aDvV~l~~ 259 (600)
+..+.|++|+|+|+ ..=+..+++.|+..|.+|.+|||+...+.. ...+... +++ .+..||+|++++
T Consensus 309 ~~~~~~~~V~vlGlafK~~t~D~R~Spa~~ii~~L~~~g~~V~~~DP~v~~~~~~~~~~~~~--~~~~~~~~ad~vvi~t 386 (425)
T PRK15182 309 GINVEGSSVLILGFTFKENCPDIRNTRIIDVVKELGKYSCKVDIFDPWVDAEEVRREYGIIP--VSEVKSSHYDAIIVAV 386 (425)
T ss_pred CCCCCCCEEEEEEeEeCCCCCccccCcHHHHHHHHHhCCCEEEEECCCCChhHHHHhcCccc--chhhhhcCCCEEEEcc
Confidence 45689999999999 456789999999999999999998643332 2233321 222 467899999999
Q ss_pred CCCccccccccHhHhc-cCCCceEEEEccCCcc
Q 007512 260 PLTPATSKVLNDETFG-KMKKGVRIINVARGGV 291 (600)
Q Consensus 260 Pl~~~t~~li~~~~l~-~mk~gailvNvarg~i 291 (600)
.-. +-+. ++-+.+. .||...+|+|+ |+-+
T Consensus 387 ~h~-~f~~-~~~~~~~~~~~~~~~iiD~-r~~~ 416 (425)
T PRK15182 387 GHQ-QFKQ-MGSEDIRGFGKDKHVLYDL-KYVL 416 (425)
T ss_pred CCH-Hhhc-CCHHHHHHhcCCCCEEEEC-CCCC
Confidence 843 3332 3434443 45545688884 5544
|
|
| >TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type | Back alignment and domain information |
|---|
Probab=95.40 E-value=0.053 Score=56.49 Aligned_cols=69 Identities=13% Similarity=0.091 Sum_probs=49.2
Q ss_pred eccCCEEEEEecChhHHHHHHHhhcCCC-EEEEECCCCCh--hHHHHcC----Cccc----CHHHHhccCCEEEEecCCC
Q 007512 194 SLVGKTLAVLGFGKVGSEVARRAKGLGM-HVIAHDPYAPA--DRARAIG----VDLV----SFDEAIATADFISLHMPLT 262 (600)
Q Consensus 194 ~l~gktiGIIGlG~IG~~vA~~l~~~g~-~V~~~d~~~~~--~~a~~~g----~~~~----~l~ell~~aDvV~l~~Pl~ 262 (600)
.+.|+++.|||.|-.|++++..|...|+ +|..+++.... ..+...+ +... ++.+.+.++|+|+.|+|..
T Consensus 122 ~~~~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~DiVInaTp~g 201 (282)
T TIGR01809 122 PLAGFRGLVIGAGGTSRAAVYALASLGVTDITVINRNPDKLSRLVDLGVQVGVITRLEGDSGGLAIEKAAEVLVSTVPAD 201 (282)
T ss_pred ccCCceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhhhcCcceeccchhhhhhcccCCCEEEECCCCC
Confidence 3678999999999999999999999997 79999886522 1222221 1111 2335567899999999864
|
This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway. |
| >PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.35 E-value=0.035 Score=61.70 Aligned_cols=64 Identities=30% Similarity=0.393 Sum_probs=47.8
Q ss_pred eccCCEEEEEecChhHHHHHHHhhcCCCEEEEECCCCC-hhHHHHcCCcccCH-HHHhccCCEEEE
Q 007512 194 SLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAP-ADRARAIGVDLVSF-DEAIATADFISL 257 (600)
Q Consensus 194 ~l~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~-~~~a~~~g~~~~~l-~ell~~aDvV~l 257 (600)
++.|++|.|+|+|.+|.++|+.|+..|.+|.++|.... .......|+..... .+-+.++|+|+.
T Consensus 6 ~~~~~~i~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~~~~~l~~~g~~~~~~~~~~~~~~d~vv~ 71 (460)
T PRK01390 6 GFAGKTVAVFGLGGSGLATARALVAGGAEVIAWDDNPASRAKAAAAGITTADLRTADWSGFAALVL 71 (460)
T ss_pred ccCCCEEEEEeecHhHHHHHHHHHHCCCEEEEECCChhhHHHHHhcCccccCCChhHHcCCCEEEE
Confidence 36789999999999999999999999999999997643 22233456654322 233578998876
|
|
| >COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=95.35 E-value=0.032 Score=55.67 Aligned_cols=90 Identities=19% Similarity=0.177 Sum_probs=67.4
Q ss_pred ceeccCCEEEEEecChhHHHHHHHhhcCCCEEEEECCCCChhH---HHHcCCccc----CHHHHhccCCEEEEecCCCcc
Q 007512 192 GVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPADR---ARAIGVDLV----SFDEAIATADFISLHMPLTPA 264 (600)
Q Consensus 192 g~~l~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~~~~---a~~~g~~~~----~l~ell~~aDvV~l~~Pl~~~ 264 (600)
..+|.||++.|||-|.+|..=++.+...|.+|+++.|....+. ..+.++.+. +.+ .+..+++|+.+++..+
T Consensus 7 ~~~l~~k~VlvvGgG~va~rKa~~ll~~ga~v~Vvs~~~~~el~~~~~~~~i~~~~~~~~~~-~~~~~~lviaAt~d~~- 84 (210)
T COG1648 7 FLDLEGKKVLVVGGGSVALRKARLLLKAGADVTVVSPEFEPELKALIEEGKIKWIEREFDAE-DLDDAFLVIAATDDEE- 84 (210)
T ss_pred EEEcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEcCCccHHHHHHHHhcCcchhhcccChh-hhcCceEEEEeCCCHH-
Confidence 4589999999999999999999999999999999998873332 122222221 233 3445999999988444
Q ss_pred ccccccHhHhccCCCceEEEEcc
Q 007512 265 TSKVLNDETFGKMKKGVRIINVA 287 (600)
Q Consensus 265 t~~li~~~~l~~mk~gailvNva 287 (600)
+|++.+..+++-.+++|+.
T Consensus 85 ----ln~~i~~~a~~~~i~vNv~ 103 (210)
T COG1648 85 ----LNERIAKAARERRILVNVV 103 (210)
T ss_pred ----HHHHHHHHHHHhCCceecc
Confidence 6777777788878899974
|
|
| >COG5322 Predicted dehydrogenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.32 E-value=0.07 Score=54.53 Aligned_cols=113 Identities=20% Similarity=0.203 Sum_probs=72.6
Q ss_pred HHHHhchHHHHHHHHcCccccccccceeccCCEEEEEec-ChhHHHHHHHhhcCCCEEEEECCCC-Ch------hHHHHc
Q 007512 167 AAMARNVAQADASVKAGKWQRNKYVGVSLVGKTLAVLGF-GKVGSEVARRAKGLGMHVIAHDPYA-PA------DRARAI 238 (600)
Q Consensus 167 l~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktiGIIGl-G~IG~~vA~~l~~~g~~V~~~d~~~-~~------~~a~~~ 238 (600)
.+.+|++.++.+ ..|.+|...|++|+|+ |.||..+|+.+.+.+......-+.. .. ..-.++
T Consensus 148 yaa~r~Vl~~~~-----------~lGidlsqatvaivGa~G~Ia~~Iar~la~~~~~~~ll~r~aea~~rq~l~~l~e~~ 216 (351)
T COG5322 148 YAACRQVLKHFA-----------QLGIDLSQATVAIVGATGDIASAIARWLAPKVGVKELLLRDAEARNRQRLTLLQEEL 216 (351)
T ss_pred HHHHHHHHHHHH-----------HhCcCHHHCeEEEecCCchHHHHHHHHhccccCEEEEecccHHhhhhhhhhhccccc
Confidence 345677766543 2589999999999996 9999999999998766544332211 11 111222
Q ss_pred CCc-ccCHHHHhccCCEEEEecCCCccccccccHhHhccCCCceEEEEccCCccccHH
Q 007512 239 GVD-LVSFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVIDEE 295 (600)
Q Consensus 239 g~~-~~~l~ell~~aDvV~l~~Pl~~~t~~li~~~~l~~mk~gailvNvarg~ivde~ 295 (600)
|-. ..+++..+.+.|+++-..... +-..|+.. .+||||+++|-++..=+|+.
T Consensus 217 ~~~~i~s~d~~~~~e~i~v~vAs~~--~g~~I~pq---~lkpg~~ivD~g~P~dvd~~ 269 (351)
T COG5322 217 GRGKIMSLDYALPQEDILVWVASMP--KGVEIFPQ---HLKPGCLIVDGGYPKDVDTS 269 (351)
T ss_pred CCCeeeeccccccccceEEEEeecC--CCceechh---hccCCeEEEcCCcCcccccc
Confidence 332 347777666767666554422 23345544 36999999999987765543
|
|
| >COG0281 SfcA Malic enzyme [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=95.28 E-value=0.67 Score=50.45 Aligned_cols=199 Identities=18% Similarity=0.160 Sum_probs=122.3
Q ss_pred hCCceeecCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCccccccccceeccCCEEEEEecChhHHHHHHHhhcCCC
Q 007512 142 EFGCLVVNAPTANTVAAAEHGIALLAAMARNVAQADASVKAGKWQRNKYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGM 221 (600)
Q Consensus 142 ~~GI~V~n~p~~~~~~vAE~~l~lll~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktiGIIGlG~IG~~vA~~l~~~g~ 221 (600)
+..|.|.|.-- ..+|--+++-++..+| ..|..|...+|.+.|.|.-|-.+++.+++.|+
T Consensus 165 ~~~IPvFhDDq---qGTaiv~lA~llnalk------------------~~gk~l~d~kiv~~GAGAAgiaia~~l~~~g~ 223 (432)
T COG0281 165 RMNIPVFHDDQ---QGTAIVTLAALLNALK------------------LTGKKLKDQKIVINGAGAAGIAIADLLVAAGV 223 (432)
T ss_pred cCCCCcccccc---cHHHHHHHHHHHHHHH------------------HhCCCccceEEEEeCCcHHHHHHHHHHHHhCC
Confidence 45688888743 3345567777777776 46889999999999999999999999999987
Q ss_pred ---EEEEECCCC--ChhH------------HHHcCCcccCHHHHhccCCEEEEecCCCccccccccHhHhccCCCceEEE
Q 007512 222 ---HVIAHDPYA--PADR------------ARAIGVDLVSFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRII 284 (600)
Q Consensus 222 ---~V~~~d~~~--~~~~------------a~~~g~~~~~l~ell~~aDvV~l~~Pl~~~t~~li~~~~l~~mk~gailv 284 (600)
+|+.+|+.- ...+ +.+..-.+.. ++.+..+|+++=+-- .+.+.++.++.|.++++|.
T Consensus 224 ~~~~i~~~D~~G~l~~~r~~~~~~~~k~~~a~~~~~~~~~-~~~~~~adv~iG~S~-----~G~~t~e~V~~Ma~~PiIf 297 (432)
T COG0281 224 KEENIFVVDRKGLLYDGREDLTMNQKKYAKAIEDTGERTL-DLALAGADVLIGVSG-----VGAFTEEMVKEMAKHPIIF 297 (432)
T ss_pred CcccEEEEecCCcccCCCcccccchHHHHHHHhhhccccc-cccccCCCEEEEcCC-----CCCcCHHHHHHhccCCEEe
Confidence 688888652 1100 1000001121 557889999876532 3889999999999999999
Q ss_pred EccCCccc-cHHHHHHhHhcCCceEEEEeccCCCCCCCCCccccCCcEEEcCCCCCCcHHH-----HHHHHHHHHHHHHH
Q 007512 285 NVARGGVI-DEEALVRALDSGRVAQAALDVFTEEPPPADSKLVQHERVTVTPHLGASTMEA-----QEGVAIEIAEAVVG 358 (600)
Q Consensus 285 Nvarg~iv-de~aL~~aL~~g~i~ga~lDv~~~EP~~~~~~L~~~~nvilTPH~~~~t~ea-----~~~~~~~~~~~l~~ 358 (600)
=.+--... ..++..++=+...|.+.|. | +.|- +.-|+++-|.++--...+ -++|-..+++.|.+
T Consensus 298 alaNP~pEi~Pe~a~~~~~~aaivaTGr------s---d~Pn-QvNNvL~FPgIfrGaLd~rA~~ItdeM~~AAa~AiA~ 367 (432)
T COG0281 298 ALANPTPEITPEDAKEWGDGAAIVATGR------S---DYPN-QVNNVLIFPGIFRGALDVRAKTITDEMKIAAAEAIAD 367 (432)
T ss_pred ecCCCCccCCHHHHhhcCCCCEEEEeCC------C---CCcc-cccceeEcchhhhhhHhhccccCCHHHHHHHHHHHHh
Confidence 88864432 2333333222224444322 1 1121 567899999886432222 13444555666666
Q ss_pred HHcCCCCCccccCCCCChh
Q 007512 359 ALKGELAATAVNAPMVPAE 377 (600)
Q Consensus 359 ~l~g~~~~~~vn~~~i~~~ 377 (600)
+.+.......+-|+..+..
T Consensus 368 ~~~~~~~~~~iiP~~~d~r 386 (432)
T COG0281 368 LAREEVLEEYIIPPPFDPR 386 (432)
T ss_pred hccccCCcCCCCCCCCchh
Confidence 6543332233333333333
|
|
| >cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains | Back alignment and domain information |
|---|
Probab=95.25 E-value=0.074 Score=43.56 Aligned_cols=61 Identities=18% Similarity=0.228 Sum_probs=44.9
Q ss_pred cEEEEEecCCCCChhhHHhhhhcCCccccceEeeeecCCCcEEEEEEeC----CCC-cHHHHHHHhc
Q 007512 527 SIILCRQVDQPGMIGTVGSILGSENVNVSFMSVGRVAPRKHAVMAIGVD----EQP-RKETLKKIGD 588 (600)
Q Consensus 527 ~~Liv~~~D~pG~Ia~V~~iL~~~~INIa~m~v~R~~~g~~al~~i~~D----~~~-~~~~l~~l~~ 588 (600)
..+.+..+|+||.+..++++|+++|+||...++... .++.++-.+.+. .++ +++.+++|++
T Consensus 2 ~~i~v~~~Dr~gLl~~i~~~l~~~~l~I~~A~i~T~-~~~~v~D~F~v~~~~~~~~~~~~~~~~l~~ 67 (73)
T cd04900 2 TEVFIYTPDRPGLFARIAGALDQLGLNILDARIFTT-RDGYALDTFVVLDPDGEPIGERERLARIRE 67 (73)
T ss_pred EEEEEEecCCCCHHHHHHHHHHHCCCCeEEeEEEEe-CCCeEEEEEEEECCCCCCCChHHHHHHHHH
Confidence 356788899999999999999999999999998754 455666666552 222 4555666543
|
This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains. |
| >COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.24 E-value=0.096 Score=56.80 Aligned_cols=95 Identities=24% Similarity=0.384 Sum_probs=67.2
Q ss_pred ceeccCCEEEEEecChhHHHHHHHhhcCCCEEEEECCCCC---------h-----------hHHHHcCCcccCHHHHhc-
Q 007512 192 GVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAP---------A-----------DRARAIGVDLVSFDEAIA- 250 (600)
Q Consensus 192 g~~l~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~---------~-----------~~a~~~g~~~~~l~ell~- 250 (600)
+..|.|+||.|=|+|++|+..|+.+...|.+|+++|.... . ......|.+.++-++++.
T Consensus 202 g~~l~G~rVaVQG~GNVg~~aa~~l~~~GAkvva~sds~g~i~~~~Gld~~~l~~~~~~~~~v~~~~ga~~i~~~e~~~~ 281 (411)
T COG0334 202 GDDLEGARVAVQGFGNVGQYAAEKLHELGAKVVAVSDSKGGIYDEDGLDVEALLELKERRGSVAEYAGAEYITNEELLEV 281 (411)
T ss_pred CCCcCCCEEEEECccHHHHHHHHHHHHcCCEEEEEEcCCCceecCCCCCHHHHHHHhhhhhhHHhhcCceEccccccccc
Confidence 4459999999999999999999999988999999764432 0 011112334444456554
Q ss_pred cCCEEEEecCCCccccccccHhHhccCCCceEEEEccCCccc
Q 007512 251 TADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVI 292 (600)
Q Consensus 251 ~aDvV~l~~Pl~~~t~~li~~~~l~~mk~gailvNvarg~iv 292 (600)
+||+.+=|. +.+.|+.+...++|-. +|+-.+-+++-
T Consensus 282 ~cDIl~PcA-----~~n~I~~~na~~l~ak-~V~EgAN~P~t 317 (411)
T COG0334 282 DCDILIPCA-----LENVITEDNADQLKAK-IVVEGANGPTT 317 (411)
T ss_pred cCcEEcccc-----cccccchhhHHHhhhc-EEEeccCCCCC
Confidence 688886665 4566888877777765 77777777764
|
|
| >cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1 | Back alignment and domain information |
|---|
Probab=95.21 E-value=0.53 Score=48.92 Aligned_cols=184 Identities=17% Similarity=0.127 Sum_probs=114.1
Q ss_pred HHHHHHHHHHHHHhchHHHHHHHHcCccccccccceeccCCEEEEEecChhHHHHHHHhhcC----CC-------EEEEE
Q 007512 158 AAEHGIALLAAMARNVAQADASVKAGKWQRNKYVGVSLVGKTLAVLGFGKVGSEVARRAKGL----GM-------HVIAH 226 (600)
Q Consensus 158 vAE~~l~lll~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktiGIIGlG~IG~~vA~~l~~~----g~-------~V~~~ 226 (600)
+|--+++-+++.+| ..|..|...+|.|+|.|.-|-.+|+.+... |+ +++.+
T Consensus 4 Ta~V~lAgllnAlk------------------~~g~~l~d~~iv~~GAGsAg~gia~ll~~~~~~~G~~~eeA~~~i~~v 65 (279)
T cd05312 4 TAAVALAGLLAALR------------------ITGKPLSDQRILFLGAGSAGIGIADLIVSAMVREGLSEEEARKKIWLV 65 (279)
T ss_pred HHHHHHHHHHHHHH------------------HhCCChhhcEEEEECcCHHHHHHHHHHHHHHHHcCCChhhccCeEEEE
Confidence 34456666776666 246788899999999999999999999865 76 78888
Q ss_pred CCCC-------Ch-----hHHHHcC-CcccCHHHHhc--cCCEEEEecCCCccccccccHhHhccCC---CceEEEEccC
Q 007512 227 DPYA-------PA-----DRARAIG-VDLVSFDEAIA--TADFISLHMPLTPATSKVLNDETFGKMK---KGVRIINVAR 288 (600)
Q Consensus 227 d~~~-------~~-----~~a~~~g-~~~~~l~ell~--~aDvV~l~~Pl~~~t~~li~~~~l~~mk---~gailvNvar 288 (600)
|.+- .. ..++... -...+|.|+++ .+|+++=+.- .-++++++.+..|. +..+|.=.+.
T Consensus 66 D~~Gll~~~r~~l~~~~~~~a~~~~~~~~~~L~e~i~~v~ptvlIG~S~----~~g~ft~evv~~Ma~~~~~PIIFaLSN 141 (279)
T cd05312 66 DSKGLLTKDRKDLTPFKKPFARKDEEKEGKSLLEVVKAVKPTVLIGLSG----VGGAFTEEVVRAMAKSNERPIIFALSN 141 (279)
T ss_pred cCCCeEeCCCCcchHHHHHHHhhcCcccCCCHHHHHHhcCCCEEEEeCC----CCCCCCHHHHHHHHhcCCCCEEEECCC
Confidence 8652 11 1222211 02348999999 8899976431 24789999999998 8899999887
Q ss_pred Ccc---ccHHHHHHhHhcCCceEEEEeccCCCCCCCCCccccCCcEEEcCCCCCCcHH-----HHHHHHHHHHHHHHHHH
Q 007512 289 GGV---IDEEALVRALDSGRVAQAALDVFTEEPPPADSKLVQHERVTVTPHLGASTME-----AQEGVAIEIAEAVVGAL 360 (600)
Q Consensus 289 g~i---vde~aL~~aL~~g~i~ga~lDv~~~EP~~~~~~L~~~~nvilTPH~~~~t~e-----a~~~~~~~~~~~l~~~l 360 (600)
-.. +..++.+++=+...|.+.|+-.-..+.-.....-=+.-|+++-|-++--... --++|-..+++.|.++.
T Consensus 142 Pt~~~E~~pe~a~~~t~G~ai~ATGsPf~pv~~~Gr~~~p~Q~NN~~iFPGiglGal~~~a~~itd~m~~aAA~aLA~~~ 221 (279)
T cd05312 142 PTSKAECTAEDAYKWTDGRALFASGSPFPPVEYNGKTYVPGQGNNAYIFPGIGLGAILSGARHITDEMFLAAAEALASLV 221 (279)
T ss_pred cCCccccCHHHHHHhhcCCEEEEeCCCCCCeeeCCeEecCCCcceeeeccchhhHHHHcCCeeCCHHHHHHHHHHHHHhC
Confidence 543 2344444432233476666432222211111122235688888877632211 12445556667777665
Q ss_pred cCC
Q 007512 361 KGE 363 (600)
Q Consensus 361 ~g~ 363 (600)
...
T Consensus 222 ~~~ 224 (279)
T cd05312 222 TDE 224 (279)
T ss_pred Ccc
Confidence 443
|
Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH |
| >PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ] | Back alignment and domain information |
|---|
Probab=95.20 E-value=0.021 Score=51.96 Aligned_cols=61 Identities=21% Similarity=0.387 Sum_probs=42.6
Q ss_pred EEEEEec-ChhHHHHHHHhhc-CCCEEEE-ECCCCCh----hHHH-----HcCCc-ccCHHHHhccCCEEEEec
Q 007512 199 TLAVLGF-GKVGSEVARRAKG-LGMHVIA-HDPYAPA----DRAR-----AIGVD-LVSFDEAIATADFISLHM 259 (600)
Q Consensus 199 tiGIIGl-G~IG~~vA~~l~~-~g~~V~~-~d~~~~~----~~a~-----~~g~~-~~~l~ell~~aDvV~l~~ 259 (600)
+|+|+|+ |+||+.+++.+.. -++++.+ +|+..+. +... ..|+. ..++++++.++|+|+-..
T Consensus 2 rV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v~~~l~~~~~~~DVvIDfT 75 (124)
T PF01113_consen 2 RVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIGPLGVPVTDDLEELLEEADVVIDFT 75 (124)
T ss_dssp EEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSST-SSBEBS-HHHHTTH-SEEEEES
T ss_pred EEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcCCcccccchhHHHhcccCCEEEEcC
Confidence 7999999 9999999999997 5898765 5665421 1111 12333 247999999999998776
|
In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A .... |
| >cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme | Back alignment and domain information |
|---|
Probab=95.20 E-value=0.64 Score=47.65 Aligned_cols=182 Identities=13% Similarity=0.104 Sum_probs=112.3
Q ss_pred HHHHHHHHHHHHHhchHHHHHHHHcCccccccccceeccCCEEEEEecChhHHHHHHHhhcCCC-----------EEEEE
Q 007512 158 AAEHGIALLAAMARNVAQADASVKAGKWQRNKYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGM-----------HVIAH 226 (600)
Q Consensus 158 vAE~~l~lll~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktiGIIGlG~IG~~vA~~l~~~g~-----------~V~~~ 226 (600)
+|--+++-+++.+| ..|..|...+|.|+|.|.-|-.+|+.+...++ +++.+
T Consensus 4 TaaV~lAgllnAlk------------------~~g~~l~d~riv~~GAGsAg~gia~ll~~~~~~~Gls~e~A~~~i~~v 65 (254)
T cd00762 4 TASVAVAGLLAALK------------------VTKKKISEHKVLFNGAGAAALGIANLIVXLXVKEGISKEEACKRIWXV 65 (254)
T ss_pred hHHHHHHHHHHHHH------------------HhCCChhhcEEEEECcCHHHHHHHHHHHHHHHhcCCCHHHHhccEEEE
Confidence 34456666776666 24678889999999999999999999986654 68888
Q ss_pred CCCC---------ChhH-----HHHcCCcccCHHHHhc--cCCEEEEecCCCccccccccHhHhccCC---CceEEEEcc
Q 007512 227 DPYA---------PADR-----ARAIGVDLVSFDEAIA--TADFISLHMPLTPATSKVLNDETFGKMK---KGVRIINVA 287 (600)
Q Consensus 227 d~~~---------~~~~-----a~~~g~~~~~l~ell~--~aDvV~l~~Pl~~~t~~li~~~~l~~mk---~gailvNva 287 (600)
|.+- .... .....-...+|.|+++ ..|+++=.. ..-+++.++.+..|. +..+|.=.+
T Consensus 66 D~~Gll~~~r~~l~~~~~~~~~~~~~~~~~~~L~eav~~~kptvlIG~S----~~~g~ft~evv~~Ma~~~~~PIIFaLS 141 (254)
T cd00762 66 DRKGLLVKNRKETCPNEYHLARFANPERESGDLEDAVEAAKPDFLIGVS----RVGGAFTPEVIRAXAEINERPVIFALS 141 (254)
T ss_pred CCCCeEeCCCCccCHHHHHHHHHcCcccccCCHHHHHHhhCCCEEEEeC----CCCCCCCHHHHHHHhhcCCCCEEEECC
Confidence 8652 1100 1111112358999999 999997643 125789999999998 889999888
Q ss_pred CCcc---ccHHHHHHhHhcCCceEEEEeccCCCCCCCCCccccCCcEEEcCCCCCCcHHH-----HHHHHHHHHHHHHHH
Q 007512 288 RGGV---IDEEALVRALDSGRVAQAALDVFTEEPPPADSKLVQHERVTVTPHLGASTMEA-----QEGVAIEIAEAVVGA 359 (600)
Q Consensus 288 rg~i---vde~aL~~aL~~g~i~ga~lDv~~~EP~~~~~~L~~~~nvilTPH~~~~t~ea-----~~~~~~~~~~~l~~~ 359 (600)
.-.. +..++.+++=+...|.+.|+-.+.++--......-+.-|+++-|-++--...+ -++|-..+++.|.++
T Consensus 142 NPt~~aE~tpe~a~~~t~G~ai~AtGspf~pv~~~g~~~~~~Q~NN~~iFPGiglGal~~~a~~itd~m~~aAA~aLA~~ 221 (254)
T cd00762 142 NPTSKAECTAEEAYTATEGRAIFASGSPFHPVELNGGTYKPGQGNNLYIFPGVALGVILCRIRHITDDVFLSAAEAIASS 221 (254)
T ss_pred CcCCccccCHHHHHhhcCCCEEEEECCCCCCcccCCceeecccccceeeccchhhhhHhhcCeECCHHHHHHHHHHHHhh
Confidence 6443 24444455433335666655433333111111222456888888776322111 134444455555555
Q ss_pred Hc
Q 007512 360 LK 361 (600)
Q Consensus 360 l~ 361 (600)
..
T Consensus 222 v~ 223 (254)
T cd00762 222 VT 223 (254)
T ss_pred CC
Confidence 43
|
Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut |
| >PTZ00082 L-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.19 E-value=0.048 Score=57.95 Aligned_cols=65 Identities=20% Similarity=0.273 Sum_probs=46.3
Q ss_pred ccCCEEEEEecChhHHHHHHHhhcCC-CEEEEECCCCChhHHHHc---------C----Ccc-cCHHHHhccCCEEEEec
Q 007512 195 LVGKTLAVLGFGKVGSEVARRAKGLG-MHVIAHDPYAPADRARAI---------G----VDL-VSFDEAIATADFISLHM 259 (600)
Q Consensus 195 l~gktiGIIGlG~IG~~vA~~l~~~g-~~V~~~d~~~~~~~a~~~---------g----~~~-~~l~ell~~aDvV~l~~ 259 (600)
+..++|+|||.|.+|..+|..+...| .+|..+|.......+..+ + +.. .+. +.+++||+|+++.
T Consensus 4 ~~~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~~~~d~-~~l~~aDiVI~ta 82 (321)
T PTZ00082 4 IKRRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKNIPQGKALDISHSNVIAGSNSKVIGTNNY-EDIAGSDVVIVTA 82 (321)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCchhhHHHHHHHhhhhccCCCeEEEECCCH-HHhCCCCEEEECC
Confidence 34579999999999999999988667 489999987642221111 1 121 255 5679999999977
Q ss_pred C
Q 007512 260 P 260 (600)
Q Consensus 260 P 260 (600)
-
T Consensus 83 g 83 (321)
T PTZ00082 83 G 83 (321)
T ss_pred C
Confidence 3
|
|
| >cd05292 LDH_2 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=95.14 E-value=0.038 Score=58.28 Aligned_cols=64 Identities=19% Similarity=0.179 Sum_probs=46.2
Q ss_pred CEEEEEecChhHHHHHHHhhcCC--CEEEEECCCCChhH--HHHcC-Cc---------ccCHHHHhccCCEEEEecCCC
Q 007512 198 KTLAVLGFGKVGSEVARRAKGLG--MHVIAHDPYAPADR--ARAIG-VD---------LVSFDEAIATADFISLHMPLT 262 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~g--~~V~~~d~~~~~~~--a~~~g-~~---------~~~l~ell~~aDvV~l~~Pl~ 262 (600)
++|+|||.|.+|..+|..+...| .+|..||+...... +.++. .. ..+. +.+++||+|+++++..
T Consensus 1 mkI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~~~d~-~~l~~aDiViita~~~ 78 (308)
T cd05292 1 MKVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIYAGDY-ADCKGADVVVITAGAN 78 (308)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHccccccCCeEEeeCCH-HHhCCCCEEEEccCCC
Confidence 47999999999999999998777 58999998763221 11111 10 0133 5689999999999953
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.08 E-value=0.054 Score=59.83 Aligned_cols=70 Identities=27% Similarity=0.395 Sum_probs=51.7
Q ss_pred eccCCEEEEEecChhHHHHHHHhhcCCCEEEEECCCCCh------hHHHHcCCccc---CHHHHhccCCEEEEecCCCc
Q 007512 194 SLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPA------DRARAIGVDLV---SFDEAIATADFISLHMPLTP 263 (600)
Q Consensus 194 ~l~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~~------~~a~~~g~~~~---~l~ell~~aDvV~l~~Pl~~ 263 (600)
.+.+|++.|+|.|.+|.++|+.|...|++|.++|+.... +.....|+... ..++....+|+|+.+.-..+
T Consensus 2 ~~~~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~d~vv~~~g~~~ 80 (450)
T PRK14106 2 ELKGKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKEEDQLKEALEELGELGIELVLGEYPEEFLEGVDLVVVSPGVPL 80 (450)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcCCEEEeCCcchhHhhcCCEEEECCCCCC
Confidence 367999999999999999999999999999999987522 11223355432 23456678999998765433
|
|
| >COG1707 ACT domain-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.07 E-value=0.046 Score=51.72 Aligned_cols=69 Identities=12% Similarity=0.217 Sum_probs=59.0
Q ss_pred EEEEecCCCCChhhHHhhhhcCCccccceEeeeecCCCcEEEEEEeCCC-CcHHHHHHHhcCCCcceEEE
Q 007512 529 ILCRQVDQPGMIGTVGSILGSENVNVSFMSVGRVAPRKHAVMAIGVDEQ-PRKETLKKIGDVPAIEEFVF 597 (600)
Q Consensus 529 Liv~~~D~pG~Ia~V~~iL~~~~INIa~m~v~R~~~g~~al~~i~~D~~-~~~~~l~~l~~~~~v~~v~~ 597 (600)
|-+...++||++..++++++++|.||.+.|..-.++|+.++..+++..- -.+.++++++..+.|.+++.
T Consensus 5 lsi~~enk~GvL~~ltgiiae~ggNIt~~q~~~~~~g~~~~iYmEiEgi~d~e~l~~~lks~d~v~ev~i 74 (218)
T COG1707 5 LSIIAENKPGVLRDLTGIIAEEGGNITYAQQFLEKDGEKALIYMEIEGIDDFEKLLERLKSFDYVIEVEI 74 (218)
T ss_pred eEEEeecCccHHHHHHHHHHhcCCceEeeehhhhccCceEEEEEEeeCCCCHHHHHHHhhccceEEEeee
Confidence 3455678999999999999999999999999988888899999998766 45588999999988887764
|
|
| >cd00300 LDH_like L-lactate dehydrogenase-like enzymes | Back alignment and domain information |
|---|
Probab=95.06 E-value=0.07 Score=56.11 Aligned_cols=87 Identities=18% Similarity=0.226 Sum_probs=56.5
Q ss_pred EEEEecChhHHHHHHHhhcCC--CEEEEECCCCChhHHHHcCC----------cc--cCHHHHhccCCEEEEecCCCccc
Q 007512 200 LAVLGFGKVGSEVARRAKGLG--MHVIAHDPYAPADRARAIGV----------DL--VSFDEAIATADFISLHMPLTPAT 265 (600)
Q Consensus 200 iGIIGlG~IG~~vA~~l~~~g--~~V~~~d~~~~~~~a~~~g~----------~~--~~l~ell~~aDvV~l~~Pl~~~t 265 (600)
|+|||.|.+|..+|-.+...| .++..+|.+.....+..... .. .+-.+.+++||+|+++.... ..
T Consensus 1 i~iiGaG~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~~~~~i~~~~~~~~l~~aDiVIitag~p-~~ 79 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVRGGDYADAADADIVVITAGAP-RK 79 (300)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhccccCCCeEEECCCHHHhCCCCEEEEcCCCC-CC
Confidence 589999999999999988777 58999998764332222211 11 11136899999999998742 22
Q ss_pred cccc-------cH-------hHhccCCCceEEEEcc
Q 007512 266 SKVL-------ND-------ETFGKMKKGVRIINVA 287 (600)
Q Consensus 266 ~~li-------~~-------~~l~~mk~gailvNva 287 (600)
.++- |. ..+....|++++++++
T Consensus 80 ~~~~R~~l~~~n~~i~~~~~~~i~~~~p~~~viv~s 115 (300)
T cd00300 80 PGETRLDLINRNAPILRSVITNLKKYGPDAIILVVS 115 (300)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcc
Confidence 2211 11 1223345788999986
|
Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot |
| >PRK06270 homoserine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.05 E-value=0.087 Score=56.45 Aligned_cols=107 Identities=21% Similarity=0.273 Sum_probs=62.8
Q ss_pred CEEEEEecChhHHHHHHHhhcC----------CCEEEE-ECCCC--------ChhHH----HHcCC-c-------ccCHH
Q 007512 198 KTLAVLGFGKVGSEVARRAKGL----------GMHVIA-HDPYA--------PADRA----RAIGV-D-------LVSFD 246 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~----------g~~V~~-~d~~~--------~~~~a----~~~g~-~-------~~~l~ 246 (600)
.+|||+|+|.||+.+++.++.. +++|.+ +|+.. +.+.+ ...+. . ..+++
T Consensus 3 i~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~~~~~~~~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 82 (341)
T PRK06270 3 MKIALIGFGGVGQGVAELLAEKREYLKKRYGLDLKVVAIADSSGSAIDPDGLDLELALKVKEETGKLADYPEGGGEISGL 82 (341)
T ss_pred EEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCCcccCcCCCCHHHHHHHHhccCCcccCccccccCCHH
Confidence 3799999999999999998743 577665 45421 22221 11221 1 13778
Q ss_pred HHh--ccCCEEEEecCCCccccccccHhHhccCCCceEEEEccCCccc-cHHHHHHhHhcC
Q 007512 247 EAI--ATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVI-DEEALVRALDSG 304 (600)
Q Consensus 247 ell--~~aDvV~l~~Pl~~~t~~li~~~~l~~mk~gailvNvarg~iv-de~aL~~aL~~g 304 (600)
+++ .+.|+|+.|+|....+...--.-....|+.|.-+|-...+.+. ..++|.++.++.
T Consensus 83 ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVtaNK~pla~~~~eL~~~A~~~ 143 (341)
T PRK06270 83 EVIRSVDADVVVEATPTNIETGEPALSHCRKALERGKHVVTSNKGPLALAYKELKELAKKN 143 (341)
T ss_pred HHhhccCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEcCCcHHHHhhHHHHHHHHHHc
Confidence 887 4689999999965432211112223446667666655444432 355666655554
|
|
| >KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=95.05 E-value=0.046 Score=57.25 Aligned_cols=46 Identities=28% Similarity=0.546 Sum_probs=37.6
Q ss_pred cCCEEEEEecChhHHHHHHHhhcCCCEEEEECCCC-ChhHH-HHcCCc
Q 007512 196 VGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYA-PADRA-RAIGVD 241 (600)
Q Consensus 196 ~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~-~~~~a-~~~g~~ 241 (600)
-|+.+||+|+|-+|.--.+.++++||+|+++|... ..+.+ +.+|.+
T Consensus 181 pG~~vgI~GlGGLGh~aVq~AKAMG~rV~vis~~~~kkeea~~~LGAd 228 (360)
T KOG0023|consen 181 PGKWVGIVGLGGLGHMAVQYAKAMGMRVTVISTSSKKKEEAIKSLGAD 228 (360)
T ss_pred CCcEEEEecCcccchHHHHHHHHhCcEEEEEeCCchhHHHHHHhcCcc
Confidence 79999999999999988888899999999999875 34433 446654
|
|
| >COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=95.05 E-value=0.043 Score=60.61 Aligned_cols=122 Identities=23% Similarity=0.359 Sum_probs=74.3
Q ss_pred ccCCEEEEEecChhHHHHHHHhhcCCCEEEEECCCCChh-----HHHHcCCccc---CHHHHhccCCEEEEecCCCcccc
Q 007512 195 LVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPAD-----RARAIGVDLV---SFDEAIATADFISLHMPLTPATS 266 (600)
Q Consensus 195 l~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~~~-----~a~~~g~~~~---~l~ell~~aDvV~l~~Pl~~~t~ 266 (600)
..||+|.|+|+|.-|.++|+.|++.|++|.++|.+...+ .....+++.. ...+.+.++|+|+..=- -+-+.
T Consensus 5 ~~~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~d~vV~SPG-i~~~~ 83 (448)
T COG0771 5 FQGKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAPEGLAAQPLLLEGIEVELGSHDDEDLAEFDLVVKSPG-IPPTH 83 (448)
T ss_pred ccCCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCccchhhhhhhccCceeecCccchhccccCCEEEECCC-CCCCC
Confidence 449999999999999999999999999999999766331 1223454432 12267888999988522 22222
Q ss_pred c-----------cccHhH-hccC-CCceEEEEcc-CCccccHHHHHHhHhc--------CCceEEEEeccCCC
Q 007512 267 K-----------VLNDET-FGKM-KKGVRIINVA-RGGVIDEEALVRALDS--------GRVAQAALDVFTEE 317 (600)
Q Consensus 267 ~-----------li~~~~-l~~m-k~gailvNva-rg~ivde~aL~~aL~~--------g~i~ga~lDv~~~E 317 (600)
- ++.+-+ +... ++..+|-=+| -|+--...-+...|++ |.|+...+|+...+
T Consensus 84 p~v~~A~~~gi~i~~dieL~~r~~~~~p~vaITGTNGKTTTTsli~~~l~~~G~~~~lgGNIG~p~l~~~~~~ 156 (448)
T COG0771 84 PLVEAAKAAGIEIIGDIELFYRLSGEAPIVAITGTNGKTTTTSLIAHLLKAAGLDALLGGNIGTPALELLEQA 156 (448)
T ss_pred HHHHHHHHcCCcEEeHHHHHHHhcCCCCEEEEECCCchHHHHHHHHHHHHhcCCCceeccccCccHHHhhccc
Confidence 2 222222 2222 2333444444 4776444444444444 34655888888764
|
|
| >cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD | Back alignment and domain information |
|---|
Probab=95.01 E-value=0.075 Score=42.28 Aligned_cols=59 Identities=14% Similarity=0.318 Sum_probs=43.5
Q ss_pred EEEEEecCCCCChhhHHhhhhcCCccccceEeeeecCCCcEEEEEEeCCC----CcHHHHHHHhc
Q 007512 528 IILCRQVDQPGMIGTVGSILGSENVNVSFMSVGRVAPRKHAVMAIGVDEQ----PRKETLKKIGD 588 (600)
Q Consensus 528 ~Liv~~~D~pG~Ia~V~~iL~~~~INIa~m~v~R~~~g~~al~~i~~D~~----~~~~~l~~l~~ 588 (600)
.+.+...|+||.++.++..|.++++||..+...... + .....+.++.+ .+++..++|++
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~-~-~~~~~~~v~~~~~~~~~~~~~~~l~~ 64 (70)
T cd04873 2 VVEVYAPDRPGLLADITRVLADLGLNIHDARISTTG-E-RALDVFYVTDSDGRPLDPERIARLEE 64 (70)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHCCCeEEEEEEeecC-C-EEEEEEEEECCCCCcCCHHHHHHHHH
Confidence 356778999999999999999999999999987543 2 56556665433 34456666543
|
This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t |
| >cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA | Back alignment and domain information |
|---|
Probab=95.00 E-value=0.028 Score=56.68 Aligned_cols=38 Identities=24% Similarity=0.256 Sum_probs=33.4
Q ss_pred eeccCCEEEEEecChhHHHHHHHhhcCCC-EEEEECCCC
Q 007512 193 VSLVGKTLAVLGFGKVGSEVARRAKGLGM-HVIAHDPYA 230 (600)
Q Consensus 193 ~~l~gktiGIIGlG~IG~~vA~~l~~~g~-~V~~~d~~~ 230 (600)
..|.+++|.|+|+|.+|..+|+.|...|. ++..+|+..
T Consensus 17 ~~L~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ 55 (228)
T cd00757 17 EKLKNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDV 55 (228)
T ss_pred HHHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence 47899999999999999999999998886 788887643
|
Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1). |
| >PRK07232 bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed | Back alignment and domain information |
|---|
Probab=94.99 E-value=1.1 Score=52.80 Aligned_cols=141 Identities=20% Similarity=0.174 Sum_probs=98.5
Q ss_pred CCceeecCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCccccccccceeccCCEEEEEecChhHHHHHHHhhcCCC-
Q 007512 143 FGCLVVNAPTANTVAAAEHGIALLAAMARNVAQADASVKAGKWQRNKYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGM- 221 (600)
Q Consensus 143 ~GI~V~n~p~~~~~~vAE~~l~lll~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktiGIIGlG~IG~~vA~~l~~~g~- 221 (600)
..|.|.|.-- ..+|--+++-++..+| ..|..+...+|.|.|.|.-|-.+|+.+...|.
T Consensus 152 ~~ip~f~DD~---~GTa~v~lA~l~na~~------------------~~~~~~~~~~iv~~GaGaag~~~a~~l~~~G~~ 210 (752)
T PRK07232 152 MDIPVFHDDQ---HGTAIISAAALLNALE------------------LVGKKIEDVKIVVSGAGAAAIACLNLLVALGAK 210 (752)
T ss_pred cCCCeecccc---chHHHHHHHHHHHHHH------------------HhCCChhhcEEEEECccHHHHHHHHHHHHcCCC
Confidence 4799999843 2345566777777776 24678889999999999999999999998887
Q ss_pred --EEEEECCCC--C------hhHHHH---cCCcccCHHHHhccCCEEEEecCCCccccccccHhHhccCCCceEEEEccC
Q 007512 222 --HVIAHDPYA--P------ADRARA---IGVDLVSFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVAR 288 (600)
Q Consensus 222 --~V~~~d~~~--~------~~~a~~---~g~~~~~l~ell~~aDvV~l~~Pl~~~t~~li~~~~l~~mk~gailvNvar 288 (600)
+++.+|.+- . ....+. ..-...+|.|+++.+|+++=. . +.+.++++.+..|.+.++|.=.+.
T Consensus 211 ~~~i~~~D~~G~i~~~r~~~~~~~k~~~a~~~~~~~l~~~i~~~~v~iG~-s----~~g~~~~~~v~~M~~~piifalsN 285 (752)
T PRK07232 211 KENIIVCDSKGVIYKGRTEGMDEWKAAYAVDTDARTLAEAIEGADVFLGL-S----AAGVLTPEMVKSMADNPIIFALAN 285 (752)
T ss_pred cccEEEEcCCCeecCCCcccccHHHHHHhccCCCCCHHHHHcCCCEEEEc-C----CCCCCCHHHHHHhccCCEEEecCC
Confidence 788888642 1 111111 111234899999999988653 2 257899999999999999999987
Q ss_pred Cccc-cHHHHHHhHhcCCceEEE
Q 007512 289 GGVI-DEEALVRALDSGRVAQAA 310 (600)
Q Consensus 289 g~iv-de~aL~~aL~~g~i~ga~ 310 (600)
.... ..++.+++ ..+.|.+.|
T Consensus 286 P~~E~~p~~a~~~-~~~~i~atG 307 (752)
T PRK07232 286 PDPEITPEEAKAV-RPDAIIATG 307 (752)
T ss_pred CCccCCHHHHHHh-cCCEEEEEC
Confidence 5543 33333332 334565554
|
|
| >PRK11579 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=94.99 E-value=0.054 Score=57.88 Aligned_cols=63 Identities=17% Similarity=0.246 Sum_probs=44.6
Q ss_pred CEEEEEecChhHHH-HHHHhhcC-CCEEEE-ECCCCChhHHHHc-CCc-ccCHHHHhc--cCCEEEEecCC
Q 007512 198 KTLAVLGFGKVGSE-VARRAKGL-GMHVIA-HDPYAPADRARAI-GVD-LVSFDEAIA--TADFISLHMPL 261 (600)
Q Consensus 198 ktiGIIGlG~IG~~-vA~~l~~~-g~~V~~-~d~~~~~~~a~~~-g~~-~~~l~ell~--~aDvV~l~~Pl 261 (600)
.++||||+|.||+. .+..++.. ++++.+ +|++... .+... +.. +.+++++++ +.|+|++|+|.
T Consensus 5 irvgiiG~G~i~~~~~~~~~~~~~~~~l~av~d~~~~~-~~~~~~~~~~~~~~~ell~~~~vD~V~I~tp~ 74 (346)
T PRK11579 5 IRVGLIGYGYASKTFHAPLIAGTPGLELAAVSSSDATK-VKADWPTVTVVSEPQHLFNDPNIDLIVIPTPN 74 (346)
T ss_pred ceEEEECCCHHHHHHHHHHHhhCCCCEEEEEECCCHHH-HHhhCCCCceeCCHHHHhcCCCCCEEEEcCCc
Confidence 38999999999985 56666654 788876 6776422 12223 332 458999996 57999999994
|
|
| >cd05293 LDH_1 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=94.97 E-value=0.1 Score=55.18 Aligned_cols=89 Identities=15% Similarity=0.217 Sum_probs=56.1
Q ss_pred CEEEEEecChhHHHHHHHhhcCC--CEEEEECCCCChhHHHHc---------C---Ccc-cCHHHHhccCCEEEEecCCC
Q 007512 198 KTLAVLGFGKVGSEVARRAKGLG--MHVIAHDPYAPADRARAI---------G---VDL-VSFDEAIATADFISLHMPLT 262 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~g--~~V~~~d~~~~~~~a~~~---------g---~~~-~~l~ell~~aDvV~l~~Pl~ 262 (600)
.+|+|||.|.+|.++|-.+...| -++..||.......+..+ . +.. .+.++ +++||+|+++.-..
T Consensus 4 ~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~~~~dy~~-~~~adivvitaG~~ 82 (312)
T cd05293 4 NKVTVVGVGQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEADKDYSV-TANSKVVIVTAGAR 82 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEEECCCHHH-hCCCCEEEECCCCC
Confidence 48999999999999999987554 489999986632221111 0 111 24554 89999999966432
Q ss_pred c---cccc-cc--cH-------hHhccCCCceEEEEcc
Q 007512 263 P---ATSK-VL--ND-------ETFGKMKKGVRIINVA 287 (600)
Q Consensus 263 ~---~t~~-li--~~-------~~l~~mk~gailvNva 287 (600)
. +++. ++ |. +.+....|++++++++
T Consensus 83 ~k~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvs 120 (312)
T cd05293 83 QNEGESRLDLVQRNVDIFKGIIPKLVKYSPNAILLVVS 120 (312)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEcc
Confidence 2 2231 11 11 1233356789999997
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains | Back alignment and domain information |
|---|
Probab=94.96 E-value=0.078 Score=43.28 Aligned_cols=48 Identities=19% Similarity=0.187 Sum_probs=38.8
Q ss_pred cEEEEEecCCCCChhhHHhhhhcCCccccceEeeeecCCCcEEEEEEeC
Q 007512 527 SIILCRQVDQPGMIGTVGSILGSENVNVSFMSVGRVAPRKHAVMAIGVD 575 (600)
Q Consensus 527 ~~Liv~~~D~pG~Ia~V~~iL~~~~INIa~m~v~R~~~g~~al~~i~~D 575 (600)
+.+++..+|+||..+.+++.|+.+++||-..++... +.|.++-.+.+-
T Consensus 2 ~eI~V~~~Dr~gLFa~iag~L~~~~LnI~~A~i~tt-~dG~~LDtF~V~ 49 (68)
T cd04928 2 HEITFAAGDKPKLLSQLSSLLGDLGLNIAEAHAFST-DDGLALDIFVVT 49 (68)
T ss_pred EEEEEEECCCcchHHHHHHHHHHCCCceEEEEEEEc-CCCeEEEEEEEe
Confidence 567888999999999999999999999999999765 445555444443
|
This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains. |
| >PRK12548 shikimate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.93 E-value=0.081 Score=55.30 Aligned_cols=37 Identities=19% Similarity=0.295 Sum_probs=33.0
Q ss_pred eccCCEEEEEecChhHHHHHHHhhcCCCE-EEEECCCC
Q 007512 194 SLVGKTLAVLGFGKVGSEVARRAKGLGMH-VIAHDPYA 230 (600)
Q Consensus 194 ~l~gktiGIIGlG~IG~~vA~~l~~~g~~-V~~~d~~~ 230 (600)
.+.||++.|+|.|-+|++++..|...|.+ |..+++..
T Consensus 123 ~~~~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~ 160 (289)
T PRK12548 123 DVKGKKLTVIGAGGAATAIQVQCALDGAKEITIFNIKD 160 (289)
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc
Confidence 46789999999999999999999999985 99998864
|
|
| >PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional | Back alignment and domain information |
|---|
Probab=94.90 E-value=0.061 Score=59.81 Aligned_cols=109 Identities=19% Similarity=0.235 Sum_probs=67.6
Q ss_pred ccCCEEEEEecChhHHH-HHHHhhcCCCEEEEECCCCCh--hHHHHcCCccc--CHHHHhccCCEEEEecCCCccc----
Q 007512 195 LVGKTLAVLGFGKVGSE-VARRAKGLGMHVIAHDPYAPA--DRARAIGVDLV--SFDEAIATADFISLHMPLTPAT---- 265 (600)
Q Consensus 195 l~gktiGIIGlG~IG~~-vA~~l~~~g~~V~~~d~~~~~--~~a~~~g~~~~--~l~ell~~aDvV~l~~Pl~~~t---- 265 (600)
..++++.|+|+|..|.+ +|+.|+..|++|.++|..... ....+.|+... .-.+.+..+|+|++.--..+..
T Consensus 5 ~~~~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~~~~~~~~~~~d~vv~spgi~~~~~~~~ 84 (461)
T PRK00421 5 RRIKRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKESAVTQRLLELGAIIFIGHDAENIKDADVVVYSSAIPDDNPELV 84 (461)
T ss_pred CCCCEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCChHHHHHHHCCCEEeCCCCHHHCCCCCEEEECCCCCCCCHHHH
Confidence 45789999999999999 799999999999999976532 22334566542 2234567899987754322211
Q ss_pred ------cccccHhHh-cc-CCCc-eEEEEccCCccccHHHHHHhHhc
Q 007512 266 ------SKVLNDETF-GK-MKKG-VRIINVARGGVIDEEALVRALDS 303 (600)
Q Consensus 266 ------~~li~~~~l-~~-mk~g-ailvNvarg~ivde~aL~~aL~~ 303 (600)
..++++.++ .. +++. .+-|-=+.|+.-...-+...|+.
T Consensus 85 ~a~~~~i~i~~~~e~~~~~~~~~~~I~ITGTnGKTTTt~ll~~iL~~ 131 (461)
T PRK00421 85 AARELGIPVVRRAEMLAELMRFRTSIAVAGTHGKTTTTSLLAHVLAE 131 (461)
T ss_pred HHHHCCCcEEeHHHHHHHHHccCcEEEEECCCCHHHHHHHHHHHHHh
Confidence 123444433 22 3322 33333346887555555566654
|
|
| >PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=94.88 E-value=0.059 Score=60.27 Aligned_cols=65 Identities=18% Similarity=0.249 Sum_probs=49.7
Q ss_pred eccCCEEEEEecChhHHHHHHHhhcCCCEEEEECCCCChh--HHHHcCCccc---CHHHHhccCCEEEEe
Q 007512 194 SLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPAD--RARAIGVDLV---SFDEAIATADFISLH 258 (600)
Q Consensus 194 ~l~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~~~--~a~~~g~~~~---~l~ell~~aDvV~l~ 258 (600)
++.++++.|+|+|..|+++|+.|+..|.+|.++|+..... ...+.|+... ...+.+.++|+|+..
T Consensus 12 ~~~~~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~d~vV~S 81 (473)
T PRK00141 12 QELSGRVLVAGAGVSGRGIAAMLSELGCDVVVADDNETARHKLIEVTGVADISTAEASDQLDSFSLVVTS 81 (473)
T ss_pred cccCCeEEEEccCHHHHHHHHHHHHCCCEEEEECCChHHHHHHHHhcCcEEEeCCCchhHhcCCCEEEeC
Confidence 6789999999999999999999999999999999765322 1234576543 223456789998775
|
|
| >PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase | Back alignment and domain information |
|---|
Probab=94.85 E-value=0.09 Score=59.66 Aligned_cols=38 Identities=32% Similarity=0.436 Sum_probs=34.4
Q ss_pred eeccCCEEEEEecChhHHHHHHHhhcCCCEEEEECCCC
Q 007512 193 VSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYA 230 (600)
Q Consensus 193 ~~l~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~ 230 (600)
..+.+|++.|+|.|-+|++++..|...|++|+.+++..
T Consensus 375 ~~~~~k~vlIlGaGGagrAia~~L~~~G~~V~i~nR~~ 412 (529)
T PLN02520 375 SPLAGKLFVVIGAGGAGKALAYGAKEKGARVVIANRTY 412 (529)
T ss_pred cCCCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 45789999999999999999999999999999998764
|
|
| >PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=94.85 E-value=0.06 Score=60.49 Aligned_cols=64 Identities=25% Similarity=0.348 Sum_probs=47.6
Q ss_pred ccCCEEEEEecChhHHHHHHHhhcCCCEEEEECCCCCh---hHHHHc--CCccc---CHHHHhccCCEEEEe
Q 007512 195 LVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPA---DRARAI--GVDLV---SFDEAIATADFISLH 258 (600)
Q Consensus 195 l~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~~---~~a~~~--g~~~~---~l~ell~~aDvV~l~ 258 (600)
+.+++|.|+|+|..|.++|+.|+..|.+|.++|..... ....+. |+... ...+.+..+|+|+..
T Consensus 5 ~~~~~i~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~~~~~~~~L~~~~~~~~~~~g~~~~~~~~~~d~vv~s 76 (498)
T PRK02006 5 LQGPMVLVLGLGESGLAMARWCARHGARLRVADTREAPPNLAALRAELPDAEFVGGPFDPALLDGVDLVALS 76 (498)
T ss_pred cCCCEEEEEeecHhHHHHHHHHHHCCCEEEEEcCCCCchhHHHHHhhcCCcEEEeCCCchhHhcCCCEEEEC
Confidence 56889999999999999999999999999999976522 122233 44321 123556789999986
|
|
| >PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=94.83 E-value=0.071 Score=58.82 Aligned_cols=110 Identities=15% Similarity=0.194 Sum_probs=66.9
Q ss_pred eccCCEEEEEecChhHHHHHHHhhcCCCEEEEECCCCCh-----hHHHHcCCccc---CHHHHhcc-CCEEEEecCCCcc
Q 007512 194 SLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPA-----DRARAIGVDLV---SFDEAIAT-ADFISLHMPLTPA 264 (600)
Q Consensus 194 ~l~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~~-----~~a~~~g~~~~---~l~ell~~-aDvV~l~~Pl~~~ 264 (600)
++.||++.|+|.|.+|.++|+.|+..|++|.++|..... +...+.|+... ...+++.. +|+|+...-..+.
T Consensus 2 ~~~~k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~d~vV~s~gi~~~ 81 (447)
T PRK02472 2 EYQNKKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKPFSENPEAQELLEEGIKVICGSHPLELLDEDFDLMVKNPGIPYT 81 (447)
T ss_pred CcCCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCCccchhHHHHHHhcCCEEEeCCCCHHHhcCcCCEEEECCCCCCC
Confidence 367999999999999999999999999999999965411 22334465432 23344554 8988775522211
Q ss_pred ----------ccccccHhHhc-cCCC-ceEEEEccCCccccHHHHHHhHhc
Q 007512 265 ----------TSKVLNDETFG-KMKK-GVRIINVARGGVIDEEALVRALDS 303 (600)
Q Consensus 265 ----------t~~li~~~~l~-~mk~-gailvNvarg~ivde~aL~~aL~~ 303 (600)
...++.+.++. .+.+ ..+-|--+.|+.-...-+...|+.
T Consensus 82 ~~~~~~a~~~~i~v~~~~el~~~~~~~~~I~VTGT~GKTTTt~ll~~iL~~ 132 (447)
T PRK02472 82 NPMVEKALEKGIPIITEVELAYLISEAPIIGITGSNGKTTTTTLIGEMLKA 132 (447)
T ss_pred CHHHHHHHHCCCcEEeHHHHHHHhcCCCEEEEeCCCchHHHHHHHHHHHHH
Confidence 11223333332 3322 233343346887656655666654
|
|
| >PRK00066 ldh L-lactate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=94.82 E-value=0.061 Score=56.97 Aligned_cols=65 Identities=17% Similarity=0.214 Sum_probs=45.8
Q ss_pred cCCEEEEEecChhHHHHHHHhhcCCC--EEEEECCCCChhHHHHcC----------Ccc-cCHHHHhccCCEEEEecC
Q 007512 196 VGKTLAVLGFGKVGSEVARRAKGLGM--HVIAHDPYAPADRARAIG----------VDL-VSFDEAIATADFISLHMP 260 (600)
Q Consensus 196 ~gktiGIIGlG~IG~~vA~~l~~~g~--~V~~~d~~~~~~~a~~~g----------~~~-~~l~ell~~aDvV~l~~P 260 (600)
.+++|+|||.|.+|..+|-.+...|. ++..||.+.....+..+. +.. .+-.+.+++||+|+++.-
T Consensus 5 ~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~~~~~~~~~~adivIitag 82 (315)
T PRK00066 5 QHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIYAGDYSDCKDADLVVITAG 82 (315)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEEeCCHHHhCCCCEEEEecC
Confidence 46799999999999999999987776 899999865432222111 111 122355899999999764
|
|
| >COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=94.80 E-value=0.079 Score=57.12 Aligned_cols=66 Identities=36% Similarity=0.505 Sum_probs=52.1
Q ss_pred ccCCEEEEEecC----------hhHHHHHHHhhcCCCEEEEECCCCChhHHHHc-CCccc-CHHHHhccCCEEEEecC
Q 007512 195 LVGKTLAVLGFG----------KVGSEVARRAKGLGMHVIAHDPYAPADRARAI-GVDLV-SFDEAIATADFISLHMP 260 (600)
Q Consensus 195 l~gktiGIIGlG----------~IG~~vA~~l~~~g~~V~~~d~~~~~~~a~~~-g~~~~-~l~ell~~aDvV~l~~P 260 (600)
|.||||||+||- .--..++++|+..|.+|.+|||-......... ++.+. ++++.++.||++++++.
T Consensus 308 l~Gk~iavlgLafKpnTDD~ReSpa~~vi~~L~~~Ga~V~aYDP~a~~~~~~~~~~~~~~~~~~~~~~~aDaivi~te 385 (414)
T COG1004 308 LKGKTIAVLGLAFKPNTDDMRESPALDIIKRLQEKGAEVIAYDPVAMENAFRNFPDVELESDAEEALKGADAIVINTE 385 (414)
T ss_pred CCCcEEEEEEEeecCCCccchhchHHHHHHHHHHCCCEEEEECchhhHHHHhcCCCceEeCCHHHHHhhCCEEEEecc
Confidence 899999999984 34567899999999999999998644332222 24443 79999999999999875
|
|
| >PTZ00079 NADP-specific glutamate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.78 E-value=0.19 Score=55.56 Aligned_cols=108 Identities=21% Similarity=0.232 Sum_probs=64.4
Q ss_pred ceeccCCEEEEEecChhHHHHHHHhhcCCCEEEE-ECCC-------C-ChhHH------HH-------------cCCccc
Q 007512 192 GVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIA-HDPY-------A-PADRA------RA-------------IGVDLV 243 (600)
Q Consensus 192 g~~l~gktiGIIGlG~IG~~vA~~l~~~g~~V~~-~d~~-------~-~~~~a------~~-------------~g~~~~ 243 (600)
+.++.|+|+.|=|+|++|+..|+.|..+|.+|++ .|.+ - +.+.. ++ .+.+++
T Consensus 232 ~~~l~Gk~VaVqG~GnVg~~aa~~L~e~GakVVavSD~~G~iy~~~Gld~~~l~~l~~~k~~~~g~i~~~~~~~~~a~~~ 311 (454)
T PTZ00079 232 NDSLEGKTVVVSGSGNVAQYAVEKLLQLGAKVLTMSDSDGYIHEPNGFTKEKLAYLMDLKNVKRGRLKEYAKHSSTAKYV 311 (454)
T ss_pred CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCCcEECCCCCCHHHHHHHHHHHhhcCCcHHhhhhccCCcEEe
Confidence 5579999999999999999999999999999994 3433 2 22111 00 022223
Q ss_pred CHHHHh-ccCCEEEEecCCCccccccccHhHhccC-CCceEEEEcc-CCccccHHHHHHhHhcCCc
Q 007512 244 SFDEAI-ATADFISLHMPLTPATSKVLNDETFGKM-KKGVRIINVA-RGGVIDEEALVRALDSGRV 306 (600)
Q Consensus 244 ~l~ell-~~aDvV~l~~Pl~~~t~~li~~~~l~~m-k~gailvNva-rg~ivde~aL~~aL~~g~i 306 (600)
+-++++ -.||+.+-|. +.+.|+.+....+ +.+|.+|--+ -+++ ..++. +.|.+..|
T Consensus 312 ~~~~~~~~~cDI~iPcA-----~~n~I~~~~a~~l~~~~ak~V~EgAN~p~-t~eA~-~~L~~~GI 370 (454)
T PTZ00079 312 PGKKPWEVPCDIAFPCA-----TQNEINLEDAKLLIKNGCKLVAEGANMPT-TIEAT-HLFKKNGV 370 (454)
T ss_pred CCcCcccCCccEEEecc-----ccccCCHHHHHHHHHcCCeEEEecCCCCC-CHHHH-HHHHHCCc
Confidence 333333 3578777665 3555776666544 4455555544 4444 33332 34444433
|
|
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=94.78 E-value=0.042 Score=60.59 Aligned_cols=66 Identities=21% Similarity=0.246 Sum_probs=49.8
Q ss_pred CEEEEEecChhHHHHHHHhhcCCCEEEEECCCCC-hhHHHH-cCCcc--------cCHHHH-hccCCEEEEecCCCc
Q 007512 198 KTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAP-ADRARA-IGVDL--------VSFDEA-IATADFISLHMPLTP 263 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~-~~~a~~-~g~~~--------~~l~el-l~~aDvV~l~~Pl~~ 263 (600)
+++.|+|+|.+|+.+|+.|...|.+|+++|++.. .+.+.+ .++.. ..++++ +.++|.|+++++...
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~a~~vi~~~~~~~ 77 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGENNDVTVIDTDEERLRRLQDRLDVRTVVGNGSSPDVLREAGAEDADLLIAVTDSDE 77 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcCEEEEEeCCCCHHHHHHcCCCcCCEEEEecCChH
Confidence 4799999999999999999999999999998763 333333 44422 134555 788999999998543
|
|
| >PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus | Back alignment and domain information |
|---|
Probab=94.74 E-value=0.062 Score=47.58 Aligned_cols=83 Identities=23% Similarity=0.443 Sum_probs=55.6
Q ss_pred EEEEecChhHHHHHHHhhcCCCEEEEECCCC-ChhHHHHcCCccc-----C---HHH-HhccCCEEEEecCCCccccccc
Q 007512 200 LAVLGFGKVGSEVARRAKGLGMHVIAHDPYA-PADRARAIGVDLV-----S---FDE-AIATADFISLHMPLTPATSKVL 269 (600)
Q Consensus 200 iGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~-~~~~a~~~g~~~~-----~---l~e-ll~~aDvV~l~~Pl~~~t~~li 269 (600)
+-|+|+|.+|+.+++.|+..+.+|++.|... ..+.+.+.|+... + |++ -+.+||.|+++++....+ +.
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~~d~~n--~~ 78 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREEGVEVIYGDATDPEVLERAGIEKADAVVILTDDDEEN--LL 78 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTSEEEES-TTSHHHHHHTTGGCESEEEEESSSHHHH--HH
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhcccccccccchhhhHHhhcCccccCEEEEccCCHHHH--HH
Confidence 5699999999999999999777999999876 3456667776432 2 222 367899999999844322 22
Q ss_pred cHhHhccCCCceEEE
Q 007512 270 NDETFGKMKKGVRII 284 (600)
Q Consensus 270 ~~~~l~~mk~gailv 284 (600)
-...+..+-+...++
T Consensus 79 ~~~~~r~~~~~~~ii 93 (116)
T PF02254_consen 79 IALLARELNPDIRII 93 (116)
T ss_dssp HHHHHHHHTTTSEEE
T ss_pred HHHHHHHHCCCCeEE
Confidence 233344445555554
|
The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A .... |
| >PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed | Back alignment and domain information |
|---|
Probab=94.74 E-value=0.061 Score=58.18 Aligned_cols=61 Identities=30% Similarity=0.410 Sum_probs=45.2
Q ss_pred CCEEEEEecChhHHHHHHHhhcCCCEEEEECCCCChhHHHHcC----Cccc---CHHHHhccCCEEEE
Q 007512 197 GKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPADRARAIG----VDLV---SFDEAIATADFISL 257 (600)
Q Consensus 197 gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~~~~a~~~g----~~~~---~l~ell~~aDvV~l 257 (600)
.++|||||-|..|+.++..++.+|++|+++|++.......-.. ..+. .+.++++.||+|+.
T Consensus 2 ~~~igilG~Gql~~ml~~aa~~lG~~v~~~d~~~~~pa~~~ad~~~~~~~~D~~~l~~~a~~~dvit~ 69 (372)
T PRK06019 2 MKTIGIIGGGQLGRMLALAAAPLGYKVIVLDPDPDSPAAQVADEVIVADYDDVAALRELAEQCDVITY 69 (372)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCCCchhHhCceEEecCCCCHHHHHHHHhcCCEEEe
Confidence 4799999999999999999999999999999876322111111 1122 36678889999864
|
|
| >PRK04523 N-acetylornithine carbamoyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=94.71 E-value=0.76 Score=49.17 Aligned_cols=99 Identities=24% Similarity=0.153 Sum_probs=64.0
Q ss_pred HHHhCCceeecCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCccccccccceec-cCCEEEEEecC-------hhHH
Q 007512 139 AATEFGCLVVNAPTANTVAAAEHGIALLAAMARNVAQADASVKAGKWQRNKYVGVSL-VGKTLAVLGFG-------KVGS 210 (600)
Q Consensus 139 aa~~~GI~V~n~p~~~~~~vAE~~l~lll~~~R~i~~~~~~~~~g~W~~~~~~g~~l-~gktiGIIGlG-------~IG~ 210 (600)
.++.-+|+|+|+... .-++ .+++=++.+.++ .| .+ .|++|+|+|.| ++..
T Consensus 132 ~a~~s~vPVINa~~~-~HPt--QaLaDl~Ti~e~------------------~g-~~~~g~ki~i~~~gd~~~~~~~v~~ 189 (335)
T PRK04523 132 FAKYSTVPVINMETI-THPC--QELAHALALQEH------------------FG-TTLRGKKYVLTWTYHPKPLNTAVAN 189 (335)
T ss_pred HHHhCCCCEEECCCC-CChH--HHHHHHHHHHHH------------------hC-CccCCCEEEEEEeccCcccccHHHH
Confidence 344567999999654 3332 233333333331 12 25 68999776643 7888
Q ss_pred HHHHHhhcCCCEEEEECC-C---CChhH-------HHHcCCc---ccCHHHHhccCCEEEEec
Q 007512 211 EVARRAKGLGMHVIAHDP-Y---APADR-------ARAIGVD---LVSFDEAIATADFISLHM 259 (600)
Q Consensus 211 ~vA~~l~~~g~~V~~~d~-~---~~~~~-------a~~~g~~---~~~l~ell~~aDvV~l~~ 259 (600)
+++..+..+|++|....| . .+.+. +...|.. ..++++.+++||+|..-.
T Consensus 190 S~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~ea~~~aDvvy~~~ 252 (335)
T PRK04523 190 SALLIATRLGMDVTLLCPTPDYILDERYMDWAEQNAAESGGSLTVSHDIDSAYAGADVVYAKS 252 (335)
T ss_pred HHHHHHHHcCCEEEEECCchhhCCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEece
Confidence 999999999999999988 3 22221 2334532 247999999999998743
|
|
| >cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme | Back alignment and domain information |
|---|
Probab=94.63 E-value=0.086 Score=38.40 Aligned_cols=57 Identities=21% Similarity=0.305 Sum_probs=41.8
Q ss_pred EEEecCCCCChhhHHhhhhcCCccccceEeeeecCCCcEEEEEEeCCC-CcHHHHHHH
Q 007512 530 LCRQVDQPGMIGTVGSILGSENVNVSFMSVGRVAPRKHAVMAIGVDEQ-PRKETLKKI 586 (600)
Q Consensus 530 iv~~~D~pG~Ia~V~~iL~~~~INIa~m~v~R~~~g~~al~~i~~D~~-~~~~~l~~l 586 (600)
.+..+|+||.+..+.+.|+++++||..+...........-+.+.++.. ..+.++++|
T Consensus 2 ~i~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 59 (60)
T cd02116 2 TVSGPDRPGLLAKVLSVLAEAGINITSIEQRTSGDGGEADIFIVVDGDGDLEKLLEAL 59 (60)
T ss_pred EEEecCCCchHHHHHHHHHHCCCcEEEEEeEEcCCCCeEEEEEEEechHHHHHHHHHh
Confidence 355678999999999999999999999998765444455566666665 334455444
|
Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p |
| >cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein) | Back alignment and domain information |
|---|
Probab=94.62 E-value=0.11 Score=42.70 Aligned_cols=58 Identities=22% Similarity=0.201 Sum_probs=43.3
Q ss_pred EEEEecCCCCChhhHHhhhhcCCccccceEeeeecCCCcEEEEEEeCC-----CC-cHHHHHHHhc
Q 007512 529 ILCRQVDQPGMIGTVGSILGSENVNVSFMSVGRVAPRKHAVMAIGVDE-----QP-RKETLKKIGD 588 (600)
Q Consensus 529 Liv~~~D~pG~Ia~V~~iL~~~~INIa~m~v~R~~~g~~al~~i~~D~-----~~-~~~~l~~l~~ 588 (600)
+=+.-+|+||.++.|+..|.++|+||..-++... ++.++..+.+.+ +. +++.+++|++
T Consensus 3 ~~v~~~Dr~gLl~~i~~~l~~~~lnI~~A~i~t~--~~~~~d~f~V~d~~~~~~~~~~~~~~~i~~ 66 (74)
T cd04925 3 IELTGTDRPGLLSEVFAVLADLHCNVVEARAWTH--NGRLACVIYVRDEETGAPIDDPIRLASIED 66 (74)
T ss_pred EEEEECCCCCHHHHHHHHHHHCCCcEEEEEEEEE--CCEEEEEEEEEcCcCCCCCCCHHHHHHHHH
Confidence 3355789999999999999999999999999854 777766666532 12 4455666543
|
This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains. |
| >COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.60 E-value=0.045 Score=55.68 Aligned_cols=55 Identities=15% Similarity=0.203 Sum_probs=48.5
Q ss_pred CccEEEEEecCCCCChhhHHhhhhcCCccccceEeeeecCCCcEEEEEEeCCCCc
Q 007512 525 EGSIILCRQVDQPGMIGTVGSILGSENVNVSFMSVGRVAPRKHAVMAIGVDEQPR 579 (600)
Q Consensus 525 ~~~~Liv~~~D~pG~Ia~V~~iL~~~~INIa~m~v~R~~~g~~al~~i~~D~~~~ 579 (600)
+...|.+..+|+||++++|++.|.++|.||..-+-.....++.=+|+++++..-.
T Consensus 6 ~~~~LtvsCpd~~GiVaais~~l~~~g~NI~~~~qf~D~~~g~FFmR~~f~~~~~ 60 (287)
T COG0788 6 DTFILTVSCPDQPGIVAAISGFLAEHGCNIVDSDQFDDPETGRFFMRVEFEGEGG 60 (287)
T ss_pred cceEEEEecCCCCCcHHHHHHHHHHcCCceeecccccccccCeEEEEEEEecCCC
Confidence 4578889999999999999999999999999988886666888899999887655
|
|
| >PRK09880 L-idonate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.60 E-value=0.11 Score=55.11 Aligned_cols=46 Identities=30% Similarity=0.499 Sum_probs=38.3
Q ss_pred cCCEEEEEecChhHHHHHHHhhcCCC-EEEEECCCC-ChhHHHHcCCc
Q 007512 196 VGKTLAVLGFGKVGSEVARRAKGLGM-HVIAHDPYA-PADRARAIGVD 241 (600)
Q Consensus 196 ~gktiGIIGlG~IG~~vA~~l~~~g~-~V~~~d~~~-~~~~a~~~g~~ 241 (600)
.|+++.|+|.|.+|...++.++..|. +|++.|... ..+.++++|+.
T Consensus 169 ~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~lGa~ 216 (343)
T PRK09880 169 QGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGAD 216 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHcCCc
Confidence 58999999999999999999999998 688888765 44566777764
|
|
| >cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins | Back alignment and domain information |
|---|
Probab=94.58 E-value=0.054 Score=56.80 Aligned_cols=60 Identities=22% Similarity=0.349 Sum_probs=42.3
Q ss_pred EEEEecChhHHHHHHHhhcCCC-EEEEECCCCChhHHHHc---------CC----cc-cCHHHHhccCCEEEEecC
Q 007512 200 LAVLGFGKVGSEVARRAKGLGM-HVIAHDPYAPADRARAI---------GV----DL-VSFDEAIATADFISLHMP 260 (600)
Q Consensus 200 iGIIGlG~IG~~vA~~l~~~g~-~V~~~d~~~~~~~a~~~---------g~----~~-~~l~ell~~aDvV~l~~P 260 (600)
|+|||.|.+|..+|..+...|. +|+.+|.......+... +. .. .+. +.+++||+|++++.
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e~~~~g~~~dl~~~~~~~~~~~~I~~t~d~-~~l~dADiVIit~g 75 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVEGLPQGKALDISQAAPILGSDTKVTGTNDY-EDIAGSDVVVITAG 75 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCCcHHHHHHHHHHHhhhhcCCCeEEEEcCCH-HHhCCCCEEEEecC
Confidence 6899999999999999875554 99999987643221111 11 11 244 45899999999885
|
Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas |
| >cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains | Back alignment and domain information |
|---|
Probab=94.57 E-value=0.12 Score=41.45 Aligned_cols=59 Identities=15% Similarity=0.276 Sum_probs=42.6
Q ss_pred EEEEEecCCCCChhhHHhhhhcCCccccceEeeeecCCCcEEEEEEe----CCCCcHHHHHHHhc
Q 007512 528 IILCRQVDQPGMIGTVGSILGSENVNVSFMSVGRVAPRKHAVMAIGV----DEQPRKETLKKIGD 588 (600)
Q Consensus 528 ~Liv~~~D~pG~Ia~V~~iL~~~~INIa~m~v~R~~~g~~al~~i~~----D~~~~~~~l~~l~~ 588 (600)
.+.+...|+||.++.++..|+++++||..+++... ++..+..+.+ ..+.+.+.+++|++
T Consensus 2 ~l~v~~~d~~gll~~i~~~l~~~~~~I~~~~~~~~--~~~~~~~f~i~~~~~~~~~~~~~~~i~~ 64 (70)
T cd04899 2 VLELTALDRPGLLADVTRVLAELGLNIHSAKIATL--GERAEDVFYVTDADGQPLDPERQEALRA 64 (70)
T ss_pred EEEEEEcCCccHHHHHHHHHHHCCCeEEEEEEEec--CCEEEEEEEEECCCCCcCCHHHHHHHHH
Confidence 35677899999999999999999999999998643 3355554443 23345566666653
|
This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains. |
| >TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC | Back alignment and domain information |
|---|
Probab=94.57 E-value=0.16 Score=51.86 Aligned_cols=84 Identities=17% Similarity=0.198 Sum_probs=58.1
Q ss_pred CEEEEEecChhHHHHHHHhhcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEecCCCccccccccHhHhccC
Q 007512 198 KTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPADRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVLNDETFGKM 277 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Pl~~~t~~li~~~~l~~m 277 (600)
-++-|+|-|.+++.+|+.++..|++|.++|++.... . ...++.++.+....| ...+..+
T Consensus 101 ~~L~IfGaG~va~~la~la~~lGf~V~v~D~R~~~~--~---------~~~~~~~~~~~~~~~----------~~~~~~~ 159 (246)
T TIGR02964 101 PHVVLFGAGHVGRALVRALAPLPCRVTWVDSREAEF--P---------EDLPDGVATLVTDEP----------EAEVAEA 159 (246)
T ss_pred CEEEEECCcHHHHHHHHHHhcCCCEEEEEeCCcccc--c---------ccCCCCceEEecCCH----------HHHHhcC
Confidence 389999999999999999999999999999875311 0 011233443322222 2233335
Q ss_pred CCceEEEEccCCccccHHHHHHhHh
Q 007512 278 KKGVRIINVARGGVIDEEALVRALD 302 (600)
Q Consensus 278 k~gailvNvarg~ivde~aL~~aL~ 302 (600)
.++..+|=+.++.-.|.+.|..+|+
T Consensus 160 ~~~t~vvi~th~h~~D~~~L~~aL~ 184 (246)
T TIGR02964 160 PPGSYFLVLTHDHALDLELCHAALR 184 (246)
T ss_pred CCCcEEEEEeCChHHHHHHHHHHHh
Confidence 5677777777888889999988884
|
Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products. |
| >PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated | Back alignment and domain information |
|---|
Probab=94.54 E-value=0.068 Score=57.31 Aligned_cols=92 Identities=17% Similarity=0.276 Sum_probs=56.4
Q ss_pred CEEEEEec-ChhHHHHHHHhhcC-CCEEEE-ECCCCChh-HHHHcC-C------cccCHHH-HhccCCEEEEecCCCccc
Q 007512 198 KTLAVLGF-GKVGSEVARRAKGL-GMHVIA-HDPYAPAD-RARAIG-V------DLVSFDE-AIATADFISLHMPLTPAT 265 (600)
Q Consensus 198 ktiGIIGl-G~IG~~vA~~l~~~-g~~V~~-~d~~~~~~-~a~~~g-~------~~~~l~e-ll~~aDvV~l~~Pl~~~t 265 (600)
++|+|+|. |.+|+.+++.+..+ ++++.+ +++....+ .+...+ + .+.++++ .+.++|+|++|+|... .
T Consensus 3 ~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~vD~Vf~alP~~~-~ 81 (343)
T PRK00436 3 IKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSRSSAGKPLSDVHPHLRGLVDLVLEPLDPEILAGADVVFLALPHGV-S 81 (343)
T ss_pred eEEEEECCCCHHHHHHHHHHHcCCCceEEEEECccccCcchHHhCcccccccCceeecCCHHHhcCCCEEEECCCcHH-H
Confidence 58999996 99999999999977 678755 55322111 111111 1 1223332 4578999999999432 2
Q ss_pred cccccHhHhccCCCceEEEEccCCccccH
Q 007512 266 SKVLNDETFGKMKKGVRIINVARGGVIDE 294 (600)
Q Consensus 266 ~~li~~~~l~~mk~gailvNvarg~ivde 294 (600)
..+. ...++.|+.+||.+..--++.
T Consensus 82 ~~~v----~~a~~aG~~VID~S~~fR~~~ 106 (343)
T PRK00436 82 MDLA----PQLLEAGVKVIDLSADFRLKD 106 (343)
T ss_pred HHHH----HHHHhCCCEEEECCcccCCCC
Confidence 2221 122367899999985444433
|
|
| >PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional | Back alignment and domain information |
|---|
Probab=94.50 E-value=0.077 Score=56.78 Aligned_cols=38 Identities=18% Similarity=0.260 Sum_probs=34.0
Q ss_pred eeccCCEEEEEecChhHHHHHHHhhcCCC-EEEEECCCC
Q 007512 193 VSLVGKTLAVLGFGKVGSEVARRAKGLGM-HVIAHDPYA 230 (600)
Q Consensus 193 ~~l~gktiGIIGlG~IG~~vA~~l~~~g~-~V~~~d~~~ 230 (600)
..|.+++|.|||+|.+|..+|+.|...|. ++..+|+..
T Consensus 20 ~~L~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (338)
T PRK12475 20 RKIREKHVLIVGAGALGAANAEALVRAGIGKLTIADRDY 58 (338)
T ss_pred HhhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 46899999999999999999999999987 788888764
|
|
| >PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis [] | Back alignment and domain information |
|---|
Probab=94.45 E-value=0.043 Score=51.18 Aligned_cols=63 Identities=24% Similarity=0.314 Sum_probs=45.1
Q ss_pred CEEEEEec-ChhHHHHHHHhh--cCCCEEEEECCCCChhHHHHcCC-----------c-ccCHHHHhccCCEEEEecC
Q 007512 198 KTLAVLGF-GKVGSEVARRAK--GLGMHVIAHDPYAPADRARAIGV-----------D-LVSFDEAIATADFISLHMP 260 (600)
Q Consensus 198 ktiGIIGl-G~IG~~vA~~l~--~~g~~V~~~d~~~~~~~a~~~g~-----------~-~~~l~ell~~aDvV~l~~P 260 (600)
.+|+|||. |.+|+.+|-.|. .+.-++..||..........+.+ . .....+.+++||+|+++.-
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~~aDivvitag 78 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITSGDYEALKDADIVVITAG 78 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEESSGGGGTTESEEEETTS
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhcccccccccccccccccccEEEEecc
Confidence 48999999 999999999987 44568999998743222111111 1 1145678899999999884
|
L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C .... |
| >cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH) | Back alignment and domain information |
|---|
Probab=94.44 E-value=0.096 Score=42.96 Aligned_cols=59 Identities=12% Similarity=0.244 Sum_probs=42.5
Q ss_pred EEEEecCCCCChhhHHhhhhcCCccccceEeeeecC--CCcEEEEEEeCCCCc----HHHHHHHhc
Q 007512 529 ILCRQVDQPGMIGTVGSILGSENVNVSFMSVGRVAP--RKHAVMAIGVDEQPR----KETLKKIGD 588 (600)
Q Consensus 529 Liv~~~D~pG~Ia~V~~iL~~~~INIa~m~v~R~~~--g~~al~~i~~D~~~~----~~~l~~l~~ 588 (600)
+++.-+|+||.++.|.+.++++|+||..+ .+|..+ .++....++++.... ++++++|++
T Consensus 2 l~~~l~d~pG~L~~vL~~f~~~~vni~~I-~Srp~~~~~~~~~f~id~~~~~~~~~~~~~l~~l~~ 66 (75)
T cd04880 2 LVFSLKNKPGALAKALKVFAERGINLTKI-ESRPSRKGLWEYEFFVDFEGHIDDPDVKEALEELKR 66 (75)
T ss_pred EEEEeCCcCCHHHHHHHHHHHCCCCEEEE-EeeecCCCCceEEEEEEEECCCCCHHHHHHHHHHHH
Confidence 45666799999999999999999999999 455433 334565677765422 256666665
|
ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech |
| >PRK08192 aspartate carbamoyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=94.41 E-value=0.6 Score=50.02 Aligned_cols=66 Identities=18% Similarity=0.269 Sum_probs=48.5
Q ss_pred ceeccCCEEEEEec---ChhHHHHHHHhh-cCCCEEEEECCCC---Chh---HHHHcCCc--c-cCHHHHhccCCEEEE
Q 007512 192 GVSLVGKTLAVLGF---GKVGSEVARRAK-GLGMHVIAHDPYA---PAD---RARAIGVD--L-VSFDEAIATADFISL 257 (600)
Q Consensus 192 g~~l~gktiGIIGl---G~IG~~vA~~l~-~~g~~V~~~d~~~---~~~---~a~~~g~~--~-~~l~ell~~aDvV~l 257 (600)
|..+.|+||++||= +++..+.+..+. .+|++|....|.. +.+ .+.+.|.. . .++++.+++||+|..
T Consensus 154 g~~l~g~kia~vGD~~~~rv~~Sl~~~l~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~d~~ea~~~aDvvyt 232 (338)
T PRK08192 154 GRGIDGMHIAMVGDLKFGRTVHSLSRLLCMYKNVSFTLVSPKELAMPDYVISDIENAGHKITITDQLEGNLDKADILYL 232 (338)
T ss_pred CCCcCCCEEEEECcCCCCchHHHHHHHHHHhcCCEEEEECCccccCCHHHHHHHHHcCCeEEEEcCHHHHHccCCEEEE
Confidence 33578999999998 588889888766 4499998887753 222 23344543 2 489999999999988
|
|
| >KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.37 E-value=0.022 Score=56.73 Aligned_cols=132 Identities=23% Similarity=0.206 Sum_probs=79.9
Q ss_pred cCCEEEEEecChhHHHHHHHhhcCCCEEEEECCCCC-hhHHHH-----------cCC-------------------cccC
Q 007512 196 VGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAP-ADRARA-----------IGV-------------------DLVS 244 (600)
Q Consensus 196 ~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~-~~~a~~-----------~g~-------------------~~~~ 244 (600)
.=+.|+|||.|.||+.||+.+..-|+.|..+|.+.. ..++.+ .+. ...+
T Consensus 10 ~~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~~aL~~A~~~I~~sl~rvakKk~~~~~~~~~e~v~~~l~ri~~~tn 89 (298)
T KOG2304|consen 10 EIKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANEDALSRATKAISSSLKRVAKKKKADDPVALEEFVDDTLDRIKTSTN 89 (298)
T ss_pred cccceEEEcccccchhHHHHHHhcCCceEEecCCHHHHHHHHHHHHHHHHHHHhhcccCChhhHHHHHHHHHHHHHHcCC
Confidence 346799999999999999999999999999998763 222211 000 0113
Q ss_pred HHHHhccCCEEEEecCCCccccccccHhHhccCCCceEEE-EccCCccccHHHHHHhHhcCCceEEEEeccCCCCCCCCC
Q 007512 245 FDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRII-NVARGGVIDEEALVRALDSGRVAQAALDVFTEEPPPADS 323 (600)
Q Consensus 245 l~ell~~aDvV~l~~Pl~~~t~~li~~~~l~~mk~gailv-Nvarg~ivde~aL~~aL~~g~i~ga~lDv~~~EP~~~~~ 323 (600)
+.+++.++|+|+=++--+-+.+.-+-++.=..+|+.++++ |+++=. ...+..+++... ..+|++.|.+-|.-
T Consensus 90 v~~~v~dadliiEAivEn~diK~~lF~~l~~~ak~~~il~tNTSSl~---lt~ia~~~~~~s-rf~GlHFfNPvPvM--- 162 (298)
T KOG2304|consen 90 VSDAVSDADLIIEAIVENLDIKRKLFKDLDKIAKSSTILATNTSSLS---LTDIASATQRPS-RFAGLHFFNPVPVM--- 162 (298)
T ss_pred HHHhhhhhHHHHHHHHHhHHHHHHHHHHHHhhcccceEEeeccccee---HHHHHhhccChh-hhceeeccCCchhH---
Confidence 5567777888876654333322222222222367887764 655533 344555555432 23788888766542
Q ss_pred ccccCCcEEEcCCC
Q 007512 324 KLVQHERVTVTPHL 337 (600)
Q Consensus 324 ~L~~~~nvilTPH~ 337 (600)
.|. .||=|+..
T Consensus 163 KLv---EVir~~~T 173 (298)
T KOG2304|consen 163 KLV---EVIRTDDT 173 (298)
T ss_pred HHh---hhhcCCCC
Confidence 344 46667753
|
|
| >PRK12749 quinate/shikimate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=94.36 E-value=0.16 Score=53.18 Aligned_cols=70 Identities=21% Similarity=0.362 Sum_probs=48.6
Q ss_pred eeccCCEEEEEecChhHHHHHHHhhcCCC-EEEEECCCCC-hhHHH----HcC------CcccCH------HHHhccCCE
Q 007512 193 VSLVGKTLAVLGFGKVGSEVARRAKGLGM-HVIAHDPYAP-ADRAR----AIG------VDLVSF------DEAIATADF 254 (600)
Q Consensus 193 ~~l~gktiGIIGlG~IG~~vA~~l~~~g~-~V~~~d~~~~-~~~a~----~~g------~~~~~l------~ell~~aDv 254 (600)
..+.||++.|+|.|-.+++++..+...|. +|..+++... .++++ ..+ +...++ .+.+.++|+
T Consensus 120 ~~~~~k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~~~~~ka~~la~~~~~~~~~~~~~~~~~~~~~l~~~~~~aDi 199 (288)
T PRK12749 120 FDIKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLADQQAFAEALASADI 199 (288)
T ss_pred CCcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCccHHHHHHHHHHHhhhccCceEEEechhhhhhhhhhcccCCE
Confidence 45788999999999999999999988886 8999998742 22222 111 112233 234567899
Q ss_pred EEEecCCC
Q 007512 255 ISLHMPLT 262 (600)
Q Consensus 255 V~l~~Pl~ 262 (600)
|+.++|+.
T Consensus 200 vINaTp~G 207 (288)
T PRK12749 200 LTNGTKVG 207 (288)
T ss_pred EEECCCCC
Confidence 98888853
|
|
| >PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional | Back alignment and domain information |
|---|
Probab=94.34 E-value=0.084 Score=60.86 Aligned_cols=92 Identities=18% Similarity=0.276 Sum_probs=64.5
Q ss_pred CCEEEEEecChhHHHHHHHhhcCCCEEEEECCCC-ChhHHHHcCCcc-----cC---HHH-HhccCCEEEEecCCCcccc
Q 007512 197 GKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYA-PADRARAIGVDL-----VS---FDE-AIATADFISLHMPLTPATS 266 (600)
Q Consensus 197 gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~-~~~~a~~~g~~~-----~~---l~e-ll~~aDvV~l~~Pl~~~t~ 266 (600)
...+-|+|+|++|+.+++.|+..|.++++.|.++ ..+.+++.|... .+ |++ -+.+||.++++++..+.+.
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vv~~~~d~~~n~ 479 (601)
T PRK03659 400 KPQVIIVGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRKYGYKVYYGDATQLELLRAAGAEKAEAIVITCNEPEDTM 479 (601)
T ss_pred cCCEEEecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhCCCeEEEeeCCCHHHHHhcCCccCCEEEEEeCCHHHHH
Confidence 3579999999999999999999999999999887 345566677642 12 222 2678999999999665444
Q ss_pred ccccHhHhccCCCceEEEEccCCc
Q 007512 267 KVLNDETFGKMKKGVRIINVARGG 290 (600)
Q Consensus 267 ~li~~~~l~~mk~gailvNvarg~ 290 (600)
.++ ....++.|...++--+|..
T Consensus 480 ~i~--~~~r~~~p~~~IiaRa~~~ 501 (601)
T PRK03659 480 KIV--ELCQQHFPHLHILARARGR 501 (601)
T ss_pred HHH--HHHHHHCCCCeEEEEeCCH
Confidence 333 2234455666666555533
|
|
| >PRK12862 malic enzyme; Reviewed | Back alignment and domain information |
|---|
Probab=94.34 E-value=1.7 Score=51.58 Aligned_cols=156 Identities=19% Similarity=0.115 Sum_probs=106.8
Q ss_pred CceeecCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCccccccccceeccCCEEEEEecChhHHHHHHHhhcCCC--
Q 007512 144 GCLVVNAPTANTVAAAEHGIALLAAMARNVAQADASVKAGKWQRNKYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGM-- 221 (600)
Q Consensus 144 GI~V~n~p~~~~~~vAE~~l~lll~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktiGIIGlG~IG~~vA~~l~~~g~-- 221 (600)
+|.|.|.-- ..+|--+++-+++.+| ..|..+...+|.|.|.|.-|-.+|+.+...|.
T Consensus 161 ~ip~f~DD~---~GTa~v~la~l~~a~~------------------~~~~~~~~~~iv~~GaGaag~~~a~~l~~~G~~~ 219 (763)
T PRK12862 161 KIPVFHDDQ---HGTAIIVAAALLNGLK------------------LVGKDIEDVKLVASGAGAAALACLDLLVSLGVKR 219 (763)
T ss_pred CCceEecCc---ccHHHHHHHHHHHHHH------------------HhCCChhhcEEEEEChhHHHHHHHHHHHHcCCCc
Confidence 699999843 2345566777777776 24678899999999999999999999998887
Q ss_pred -EEEEECCCC----------Ch---hHHHHcCCcccCHHHHhccCCEEEEecCCCccccccccHhHhccCCCceEEEEcc
Q 007512 222 -HVIAHDPYA----------PA---DRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVA 287 (600)
Q Consensus 222 -~V~~~d~~~----------~~---~~a~~~g~~~~~l~ell~~aDvV~l~~Pl~~~t~~li~~~~l~~mk~gailvNva 287 (600)
+++.+|..- .. ..++.. ...+|.|+++.+|+++=.- +-+.++++.+..|.+.++|.=.+
T Consensus 220 ~~i~~~D~~G~i~~~r~~~l~~~~~~~a~~~--~~~~l~e~~~~~~v~iG~s-----~~g~~~~~~v~~M~~~piifals 292 (763)
T PRK12862 220 ENIWVTDIKGVVYEGRTELMDPWKARYAQKT--DARTLAEVIEGADVFLGLS-----AAGVLKPEMVKKMAPRPLIFALA 292 (763)
T ss_pred ccEEEEcCCCeeeCCCCccccHHHHHHhhhc--ccCCHHHHHcCCCEEEEcC-----CCCCCCHHHHHHhccCCEEEeCC
Confidence 788888532 11 122221 2348999999999987533 24789999999999999999998
Q ss_pred CCccc-cHHHHHHhHhcCCceEEEEeccCCCCCCCCCccccCCcEEEcCCCC
Q 007512 288 RGGVI-DEEALVRALDSGRVAQAALDVFTEEPPPADSKLVQHERVTVTPHLG 338 (600)
Q Consensus 288 rg~iv-de~aL~~aL~~g~i~ga~lDv~~~EP~~~~~~L~~~~nvilTPH~~ 338 (600)
.-... ..++.+++ ..+.|.+.|- ...| =+.-|+++-|-++
T Consensus 293 NP~~E~~p~~a~~~-~~~~i~atGr---s~~p-------~Q~NN~~~FPgi~ 333 (763)
T PRK12862 293 NPTPEILPEEARAV-RPDAIIATGR---SDYP-------NQVNNVLCFPYIF 333 (763)
T ss_pred CCcccCCHHHHHHh-cCCEEEEECC---cCCC-------Ccccceeeccchh
Confidence 75542 33333333 2245655541 1111 1234777777665
|
|
| >PRK10669 putative cation:proton antiport protein; Provisional | Back alignment and domain information |
|---|
Probab=94.32 E-value=0.067 Score=61.07 Aligned_cols=71 Identities=18% Similarity=0.385 Sum_probs=52.5
Q ss_pred CEEEEEecChhHHHHHHHhhcCCCEEEEECCCC-ChhHHHHcCCccc-----C---HHH-HhccCCEEEEecCCCccccc
Q 007512 198 KTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYA-PADRARAIGVDLV-----S---FDE-AIATADFISLHMPLTPATSK 267 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~-~~~~a~~~g~~~~-----~---l~e-ll~~aDvV~l~~Pl~~~t~~ 267 (600)
..+-|+|+|++|+.+|+.|+..|.++++.|.+. ..+.+++.|+..+ + +++ -+++||.++++++...++..
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~g~~~i~GD~~~~~~L~~a~i~~a~~viv~~~~~~~~~~ 497 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRERGIRAVLGNAANEEIMQLAHLDCARWLLLTIPNGYEAGE 497 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCeEEEcCCCCHHHHHhcCccccCEEEEEcCChHHHHH
Confidence 468999999999999999999999999999886 3455666676422 2 221 25689989888886554433
Q ss_pred c
Q 007512 268 V 268 (600)
Q Consensus 268 l 268 (600)
+
T Consensus 498 i 498 (558)
T PRK10669 498 I 498 (558)
T ss_pred H
Confidence 3
|
|
| >PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase | Back alignment and domain information |
|---|
Probab=94.28 E-value=0.077 Score=57.72 Aligned_cols=98 Identities=18% Similarity=0.236 Sum_probs=62.1
Q ss_pred ccCCEEEEEec-ChhHHHHHHHhhcC-CCEEEEECCCCCh-hHHHHcC-------C-cccCHHH-HhccCCEEEEecCCC
Q 007512 195 LVGKTLAVLGF-GKVGSEVARRAKGL-GMHVIAHDPYAPA-DRARAIG-------V-DLVSFDE-AIATADFISLHMPLT 262 (600)
Q Consensus 195 l~gktiGIIGl-G~IG~~vA~~l~~~-g~~V~~~d~~~~~-~~a~~~g-------~-~~~~l~e-ll~~aDvV~l~~Pl~ 262 (600)
..-++|+|+|. |.+|+.+.+.|... ++++..+....+. +...... . ...+++. .++++|+|++|+|..
T Consensus 36 ~~~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~~saG~~i~~~~~~l~~~~~~~~~~~~~~~~~~~DvVf~Alp~~ 115 (381)
T PLN02968 36 EEKKRIFVLGASGYTGAEVRRLLANHPDFEITVMTADRKAGQSFGSVFPHLITQDLPNLVAVKDADFSDVDAVFCCLPHG 115 (381)
T ss_pred ccccEEEEECCCChHHHHHHHHHHhCCCCeEEEEEChhhcCCCchhhCccccCccccceecCCHHHhcCCCEEEEcCCHH
Confidence 35568999997 99999999999977 7888776543211 1101001 0 1112222 258899999999943
Q ss_pred ccccccccHhHhccCCCceEEEEccCCccccHHHHH
Q 007512 263 PATSKVLNDETFGKMKKGVRIINVARGGVIDEEALV 298 (600)
Q Consensus 263 ~~t~~li~~~~l~~mk~gailvNvarg~ivde~aL~ 298 (600)
...+....|+.|+.+||.+..-..+.++.+
T Consensus 116 ------~s~~i~~~~~~g~~VIDlSs~fRl~~~~~y 145 (381)
T PLN02968 116 ------TTQEIIKALPKDLKIVDLSADFRLRDIAEY 145 (381)
T ss_pred ------HHHHHHHHHhCCCEEEEcCchhccCCcccc
Confidence 234444446678999999865555544443
|
|
| >cd08230 glucose_DH Glucose dehydrogenase | Back alignment and domain information |
|---|
Probab=94.20 E-value=0.12 Score=55.02 Aligned_cols=46 Identities=24% Similarity=0.252 Sum_probs=37.3
Q ss_pred cCCEEEEEecChhHHHHHHHhhcCCCEEEEECCC---C-ChhHHHHcCCc
Q 007512 196 VGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPY---A-PADRARAIGVD 241 (600)
Q Consensus 196 ~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~---~-~~~~a~~~g~~ 241 (600)
.|+++.|+|.|.||...++.++..|.+|++.++. . ..+.+++.|+.
T Consensus 172 ~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~~Ga~ 221 (355)
T cd08230 172 NPRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEELGAT 221 (355)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCE
Confidence 5889999999999999999999999999999863 2 33455666654
|
Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai |
| >PRK08306 dipicolinate synthase subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=94.20 E-value=0.16 Score=53.32 Aligned_cols=91 Identities=25% Similarity=0.252 Sum_probs=65.7
Q ss_pred cCCEEEEEecChhHHHHHHHhhcCCCEEEEECCCCChhHHHHcCCccc-CHHHHhccCCEEEEecCCCcccc---c----
Q 007512 196 VGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPADRARAIGVDLV-SFDEAIATADFISLHMPLTPATS---K---- 267 (600)
Q Consensus 196 ~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~~~~a~~~g~~~~-~l~ell~~aDvV~l~~Pl~~~t~---~---- 267 (600)
.|++++|||-=.=-..++++|.+.|++|..+.-. . +.....|+... +.++++.+||+|++-+|.+.+.. .
T Consensus 1 ~~~~~~v~ggd~r~~~~~~~l~~~G~~v~~~g~~-~-~~~~~~g~~~~~~~~~~~~~ad~ii~~~p~~~~~~~i~~~~~~ 78 (296)
T PRK08306 1 TGKHIAVIGGDARQLELIRKLVELGAKVSLVGFD-Q-LDHGFTGATKSSSLEEALSDVDVIILPVPGTNDEGNVDTVFSN 78 (296)
T ss_pred CCcEEEEEcCcHHHHHHHHHHHHCCCEEEEEecc-c-cccccCCceeeccHHHHhccCCEEEECCccccCCceeeccccc
Confidence 4789999999999999999999999999875311 1 11123477665 56788999999999988654321 1
Q ss_pred ---cccHhHhccCCCceEEEEccCC
Q 007512 268 ---VLNDETFGKMKKGVRIINVARG 289 (600)
Q Consensus 268 ---li~~~~l~~mk~gailvNvarg 289 (600)
-++.+.++.||+++.++ +|.+
T Consensus 79 ~~~~~~~~~l~~l~~~~~v~-~G~~ 102 (296)
T PRK08306 79 EKLVLTEELLELTPEHCTIF-SGIA 102 (296)
T ss_pred cCCcchHHHHHhcCCCCEEE-EecC
Confidence 13577899999998544 4443
|
|
| >PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=94.19 E-value=0.11 Score=57.99 Aligned_cols=72 Identities=19% Similarity=0.177 Sum_probs=52.0
Q ss_pred ceeccCCEEEEEecChhHHHHHHHhhcCCCEEEEECCCCCh------hHHHHcCCccc--CHHHHhccCCEEEEecCCCc
Q 007512 192 GVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPA------DRARAIGVDLV--SFDEAIATADFISLHMPLTP 263 (600)
Q Consensus 192 g~~l~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~~------~~a~~~g~~~~--~l~ell~~aDvV~l~~Pl~~ 263 (600)
+..+.++++.|||.|.+|.++|+.|+..|++|.++|..... ....+.|+... .-.+....+|+|+++.-..+
T Consensus 11 ~~~~~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~D~Vv~s~Gi~~ 90 (480)
T PRK01438 11 HSDWQGLRVVVAGLGVSGFAAADALLELGARVTVVDDGDDERHRALAAILEALGATVRLGPGPTLPEDTDLVVTSPGWRP 90 (480)
T ss_pred ccCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhhHHHHHHHHHcCCEEEECCCccccCCCCEEEECCCcCC
Confidence 45678999999999999999999999999999999865411 22345576542 11124557999998874433
|
|
| >PRK06027 purU formyltetrahydrofolate deformylase; Reviewed | Back alignment and domain information |
|---|
Probab=94.18 E-value=0.049 Score=56.94 Aligned_cols=51 Identities=14% Similarity=0.138 Sum_probs=41.7
Q ss_pred ccEEEEEecCCCCChhhHHhhhhcCCccccceEeeeecCCCcEEEEEEeCC
Q 007512 526 GSIILCRQVDQPGMIGTVGSILGSENVNVSFMSVGRVAPRKHAVMAIGVDE 576 (600)
Q Consensus 526 ~~~Liv~~~D~pG~Ia~V~~iL~~~~INIa~m~v~R~~~g~~al~~i~~D~ 576 (600)
.+.+-+.-+|+||+++.|++.|+++|+||.+++..+..-++.-.|.+.++-
T Consensus 6 ~~vitv~G~DrpGIVa~Vt~~La~~g~NI~d~s~~~~~~~g~F~m~i~v~~ 56 (286)
T PRK06027 6 RYVLTLSCPDRPGIVAAVSNFLYEHGGNIVDADQFVDPETGRFFMRVEFEG 56 (286)
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHCCCCEEEceeEEcCCCCeEEEEEEEEe
Confidence 455667789999999999999999999999999988555566666666664
|
|
| >KOG2653 consensus 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.13 E-value=0.67 Score=49.29 Aligned_cols=149 Identities=18% Similarity=0.234 Sum_probs=101.8
Q ss_pred CEEEEEecChhHHHHHHHhhcCCCEEEEECCCCCh-hH--HH-HcCC---cccCHHHH---hccCCEEEEecCCCccccc
Q 007512 198 KTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPA-DR--AR-AIGV---DLVSFDEA---IATADFISLHMPLTPATSK 267 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~~-~~--a~-~~g~---~~~~l~el---l~~aDvV~l~~Pl~~~t~~ 267 (600)
..||.|||+-||+.++......|+.|.+|++..+. +. +. +.|. ...+++++ ++.-..|++.+-.......
T Consensus 7 ~digLiGLaVMGqnLiLN~~d~Gf~v~~yNRT~skvD~flaneak~~~i~ga~S~ed~v~klk~PR~iillvkAG~pVD~ 86 (487)
T KOG2653|consen 7 ADIGLIGLAVMGQNLILNIADKGFTVCAYNRTTSKVDEFLANEAKGTKIIGAYSLEDFVSKLKKPRVIILLVKAGAPVDQ 86 (487)
T ss_pred cchhhhhHhhhhhhhhhcccccCceEEEeccchHhHHHHHHHhhcCCcccCCCCHHHHHHhcCCCcEEEEEeeCCCcHHH
Confidence 36899999999999999999999999999987632 21 11 2232 23477776 4556777777654443444
Q ss_pred cccHhHhccCCCceEEEEccCCccccHHHHHHhHhcCCceEEEEeccCCCCCCCCCccccCCcEEEcCCCCCCcHHHHHH
Q 007512 268 VLNDETFGKMKKGVRIINVARGGVIDEEALVRALDSGRVAQAALDVFTEEPPPADSKLVQHERVTVTPHLGASTMEAQEG 347 (600)
Q Consensus 268 li~~~~l~~mk~gailvNvarg~ivde~aL~~aL~~g~i~ga~lDv~~~EP~~~~~~L~~~~nvilTPH~~~~t~ea~~~ 347 (600)
+| ++....|.+|-+|||-+...--|.+.-.+.|....|...|.-|.+.|--+...| . +-| |.+.+++..
T Consensus 87 ~I-~~L~p~LekgDiIIDGGNs~y~dT~RR~~el~k~GilfvG~GVSGGEEGAR~GP-----S--lMp---Gg~~~Awp~ 155 (487)
T KOG2653|consen 87 FI-EELVPYLEKGDIIIDGGNSEYQDTERRCRELAKKGILFVGSGVSGGEEGARYGP-----S--LMP---GGSKEAWPH 155 (487)
T ss_pred HH-HHHHhhcCCCCEEEeCCcccCcchHHHHHHHHhcCcEEEecCccCcccccccCC-----c--cCC---CCChHHHHH
Confidence 44 455667899999999988777787777777888777788999999884322222 2 223 455677766
Q ss_pred HHHHHHHHHHH
Q 007512 348 VAIEIAEAVVG 358 (600)
Q Consensus 348 ~~~~~~~~l~~ 358 (600)
+ ..+.+.|..
T Consensus 156 i-k~ifq~iaa 165 (487)
T KOG2653|consen 156 I-KDIFQKIAA 165 (487)
T ss_pred H-HHHHHHHHH
Confidence 5 445555533
|
|
| >PRK07200 aspartate/ornithine carbamoyltransferase family protein; Validated | Back alignment and domain information |
|---|
Probab=94.11 E-value=0.78 Score=50.10 Aligned_cols=65 Identities=28% Similarity=0.340 Sum_probs=49.2
Q ss_pred eccCCEEEEEec-----C---hhHHHHHHHhhcCCCEEEEECCCC---Chh---H----HHHcCCc---ccCHHHHhccC
Q 007512 194 SLVGKTLAVLGF-----G---KVGSEVARRAKGLGMHVIAHDPYA---PAD---R----ARAIGVD---LVSFDEAIATA 252 (600)
Q Consensus 194 ~l~gktiGIIGl-----G---~IG~~vA~~l~~~g~~V~~~d~~~---~~~---~----a~~~g~~---~~~l~ell~~a 252 (600)
.+.|+||+|+|- | ++..+++..+..+|++|....|.. .++ . +.+.|.. ..++++.+++|
T Consensus 184 ~l~g~kVaivg~~~~~~g~~~~Va~Sl~~~~~~lG~~v~~~~P~~~~~~~~i~~~a~~~~~~~G~~i~~~~d~~eav~~a 263 (395)
T PRK07200 184 NLKGKKIAMTWAYSPSYGKPLSVPQGIIGLMTRFGMDVTLAHPEGYDLMPEVVEVAKKNAKASGGSFRQVNSMEEAFKDA 263 (395)
T ss_pred ccCCCEEEEEeccccccCCcchHHHHHHHHHHHcCCEEEEECCCccCCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCC
Confidence 478999999985 5 566899999999999999988763 122 1 2334542 24899999999
Q ss_pred CEEEEe
Q 007512 253 DFISLH 258 (600)
Q Consensus 253 DvV~l~ 258 (600)
|+|..-
T Consensus 264 DvVYtd 269 (395)
T PRK07200 264 DIVYPK 269 (395)
T ss_pred CEEEEc
Confidence 999885
|
|
| >PRK05690 molybdopterin biosynthesis protein MoeB; Provisional | Back alignment and domain information |
|---|
Probab=94.07 E-value=0.049 Score=55.59 Aligned_cols=38 Identities=18% Similarity=0.282 Sum_probs=33.3
Q ss_pred eeccCCEEEEEecChhHHHHHHHhhcCCC-EEEEECCCC
Q 007512 193 VSLVGKTLAVLGFGKVGSEVARRAKGLGM-HVIAHDPYA 230 (600)
Q Consensus 193 ~~l~gktiGIIGlG~IG~~vA~~l~~~g~-~V~~~d~~~ 230 (600)
..|.+++|.|||+|.+|..+|+.|...|. ++..+|...
T Consensus 28 ~~L~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ 66 (245)
T PRK05690 28 EKLKAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDT 66 (245)
T ss_pred HHhcCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence 47999999999999999999999998885 788887653
|
|
| >cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases | Back alignment and domain information |
|---|
Probab=94.03 E-value=0.089 Score=58.03 Aligned_cols=64 Identities=19% Similarity=0.172 Sum_probs=44.5
Q ss_pred CEEEEEecChhHHHHHH---Hh---hcCCCEEEEECCCCChhH-H--------HHcCC----c-ccCHHHHhccCCEEEE
Q 007512 198 KTLAVLGFGKVGSEVAR---RA---KGLGMHVIAHDPYAPADR-A--------RAIGV----D-LVSFDEAIATADFISL 257 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~---~l---~~~g~~V~~~d~~~~~~~-a--------~~~g~----~-~~~l~ell~~aDvV~l 257 (600)
.+|+|||.|.+|...+- .+ ...|.+|..||.+..... . ...+. . ..++++.++.||+|+.
T Consensus 1 ~KIaIIGaGs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~l~~~~~~~~~~~~~~~~~~~I~~ttD~~eal~~AD~Vi~ 80 (423)
T cd05297 1 IKIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDIDEERLETVEILAKKIVEELGAPLKIEATTDRREALDGADFVIN 80 (423)
T ss_pred CeEEEECCChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhcCCCEEEE
Confidence 37999999999998655 22 223679999998763211 1 11121 1 2368899999999999
Q ss_pred ecCC
Q 007512 258 HMPL 261 (600)
Q Consensus 258 ~~Pl 261 (600)
++|.
T Consensus 81 ai~~ 84 (423)
T cd05297 81 TIQV 84 (423)
T ss_pred eeEe
Confidence 9994
|
linked to 3D####ucture |
| >PRK13011 formyltetrahydrofolate deformylase; Reviewed | Back alignment and domain information |
|---|
Probab=94.00 E-value=0.12 Score=54.00 Aligned_cols=52 Identities=8% Similarity=0.086 Sum_probs=40.2
Q ss_pred ccEEEEEecCCCCChhhHHhhhhcCCccccceEeeeecCCCcEEEEEEeCCC
Q 007512 526 GSIILCRQVDQPGMIGTVGSILGSENVNVSFMSVGRVAPRKHAVMAIGVDEQ 577 (600)
Q Consensus 526 ~~~Liv~~~D~pG~Ia~V~~iL~~~~INIa~m~v~R~~~g~~al~~i~~D~~ 577 (600)
.+.+-+.-+|+||+|+.|++.|+++++||.+++..-...++.=.|.++++.+
T Consensus 7 ~~vitv~G~DrpGIVa~VT~~La~~~vNI~dls~~~~~~~~~F~m~~~~~~p 58 (286)
T PRK13011 7 TFVLTLSCPSAAGIVAAVTGFLAEHGCYITELHSFDDRLSGRFFMRVEFHSE 58 (286)
T ss_pred eEEEEEEeCCCCCHHHHHHHHHHhCCCCEEEeeeeecCCCCeEEEEEEEecC
Confidence 3456677899999999999999999999999998633344445566676533
|
|
| >COG3288 PntA NAD/NADP transhydrogenase alpha subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=93.98 E-value=0.077 Score=55.22 Aligned_cols=98 Identities=26% Similarity=0.397 Sum_probs=71.6
Q ss_pred ceeccCCEEEEEecChhHHHHHHHhhcCCCEEEEECCCC-ChhHHHHcCCcc---------------cC----------H
Q 007512 192 GVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYA-PADRARAIGVDL---------------VS----------F 245 (600)
Q Consensus 192 g~~l~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~-~~~~a~~~g~~~---------------~~----------l 245 (600)
+-...+.++-++|+|-+|-..+...+..|+-|..+|-.. ..++-++.|.++ .+ +
T Consensus 159 agtv~pA~vlv~G~Gvagl~aiata~~lG~iVt~rdlrm~~Keqv~s~Ga~f~~~~~ee~~gGYAk~ms~~~~~~q~~~~ 238 (356)
T COG3288 159 AGTVSPAKVLVIGAGVAGLAAIATAVRLGAIVTARDLRMFKKEQVESLGAKFLAVEDEESAGGYAKEMSEEFIAKQAELV 238 (356)
T ss_pred cccccchhhhhhhHHHHHHHHHHHHhhcceEEehhhhhhHHhhhhhhcccccccccccccCCCccccCCHHHHHHHHHHH
Confidence 346777888999999999999998889999999998665 223323333211 11 3
Q ss_pred HHHhccCCEEEEec--CCCccccccccHhHhccCCCceEEEEcc--CCc
Q 007512 246 DEAIATADFISLHM--PLTPATSKVLNDETFGKMKKGVRIINVA--RGG 290 (600)
Q Consensus 246 ~ell~~aDvV~l~~--Pl~~~t~~li~~~~l~~mk~gailvNva--rg~ 290 (600)
.+..++.|+|+... |-.| --.++.++..+.||||.++||.+ +|+
T Consensus 239 a~~~~~~DivITTAlIPGrp-AP~Lvt~~mv~sMkpGSViVDlAa~~GG 286 (356)
T COG3288 239 AEQAKEVDIVITTALIPGRP-APKLVTAEMVASMKPGSVIVDLAAETGG 286 (356)
T ss_pred HHHhcCCCEEEEecccCCCC-CchhhHHHHHHhcCCCcEEEEehhhcCC
Confidence 45678999998753 4333 45688999999999999999986 554
|
|
| >PRK10637 cysG siroheme synthase; Provisional | Back alignment and domain information |
|---|
Probab=93.94 E-value=0.12 Score=57.52 Aligned_cols=91 Identities=14% Similarity=0.026 Sum_probs=65.5
Q ss_pred ceeccCCEEEEEecChhHHHHHHHhhcCCCEEEEECCCCChhHH--HHc-CCccc---CHHHHhccCCEEEEecCCCccc
Q 007512 192 GVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPADRA--RAI-GVDLV---SFDEAIATADFISLHMPLTPAT 265 (600)
Q Consensus 192 g~~l~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~~~~a--~~~-g~~~~---~l~ell~~aDvV~l~~Pl~~~t 265 (600)
-.+|.||++.|||-|.++..=++.|..+|.+|.++.|..+.+.. .+. .+.+. -..+.++.+++|+.|+...+
T Consensus 7 ~~~l~~~~vlvvGgG~vA~rk~~~ll~~ga~v~visp~~~~~~~~l~~~~~i~~~~~~~~~~dl~~~~lv~~at~d~~-- 84 (457)
T PRK10637 7 FCQLRDRDCLLVGGGDVAERKARLLLDAGARLTVNALAFIPQFTAWADAGMLTLVEGPFDESLLDTCWLAIAATDDDA-- 84 (457)
T ss_pred EEEcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHhCCCEEEEeCCCChHHhCCCEEEEECCCCHH--
Confidence 35899999999999999999888999999999999987754421 122 22221 12456788999988876433
Q ss_pred cccccHhHhccCCCceEEEEcc
Q 007512 266 SKVLNDETFGKMKKGVRIINVA 287 (600)
Q Consensus 266 ~~li~~~~l~~mk~gailvNva 287 (600)
+|+.....++...+++|++
T Consensus 85 ---~n~~i~~~a~~~~~lvN~~ 103 (457)
T PRK10637 85 ---VNQRVSEAAEARRIFCNVV 103 (457)
T ss_pred ---HhHHHHHHHHHcCcEEEEC
Confidence 5666666666666777765
|
|
| >PRK05708 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=93.89 E-value=0.22 Score=52.47 Aligned_cols=109 Identities=18% Similarity=0.185 Sum_probs=69.5
Q ss_pred CEEEEEecChhHHHHHHHhhcCCCEEEEECCCC-ChhHHHHc-CCccc------------CHHHHhccCCEEEEecCCCc
Q 007512 198 KTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYA-PADRARAI-GVDLV------------SFDEAIATADFISLHMPLTP 263 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~-~~~~a~~~-g~~~~------------~l~ell~~aDvV~l~~Pl~~ 263 (600)
++|+|+|.|.||+-+|-+|...|.+|..+++.. ..+...+. |+... .-.+....+|+|++|+=..+
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~~~~~~i~~~~Gl~i~~~g~~~~~~~~~~~~~~~~~~D~viv~vK~~~ 82 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDRQRLAAYQQAGGLTLVEQGQASLYAIPAETADAAEPIHRLLLACKAYD 82 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCCeEEEEechHHHHHHhhcCCeEEeeCCcceeeccCCCCcccccccCEEEEECCHHh
Confidence 579999999999999999998899999998864 33323222 33110 11123457899999985332
Q ss_pred cccccccHhHhccCCCceEEEEccCCccccHHHHHHhHhcCCceEE
Q 007512 264 ATSKVLNDETFGKMKKGVRIINVARGGVIDEEALVRALDSGRVAQA 309 (600)
Q Consensus 264 ~t~~li~~~~l~~mk~gailvNvarg~ivde~aL~~aL~~g~i~ga 309 (600)
+...+ +.....+.+++.++-.--| +-.++.+.+.+...++.++
T Consensus 83 -~~~al-~~l~~~l~~~t~vv~lQNG-v~~~e~l~~~~~~~~v~~g 125 (305)
T PRK05708 83 -AEPAV-ASLAHRLAPGAELLLLQNG-LGSQDAVAARVPHARCIFA 125 (305)
T ss_pred -HHHHH-HHHHhhCCCCCEEEEEeCC-CCCHHHHHHhCCCCcEEEE
Confidence 33332 2334446778877766444 3346667777766666554
|
|
| >PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional | Back alignment and domain information |
|---|
Probab=93.89 E-value=0.14 Score=50.39 Aligned_cols=53 Identities=11% Similarity=0.206 Sum_probs=39.8
Q ss_pred cEEEEEecCCCCChhhHHhhhhcCCccccceEeeeecC--CCc--EEEEEEeCCCCc
Q 007512 527 SIILCRQVDQPGMIGTVGSILGSENVNVSFMSVGRVAP--RKH--AVMAIGVDEQPR 579 (600)
Q Consensus 527 ~~Liv~~~D~pG~Ia~V~~iL~~~~INIa~m~v~R~~~--g~~--al~~i~~D~~~~ 579 (600)
+.+-+.-.|+||++..|+..|++++|||.+++...... .+. -.|.++++-|..
T Consensus 96 ~~v~v~G~DrPGIV~~vT~~la~~~iNI~~L~T~~~~a~~~~~~lf~~~~~v~lP~~ 152 (190)
T PRK11589 96 VWVQVEVADSPHLIERFTALFDSHHMNIAELVSRTQPAEGERPAQLHIQITAHSPAS 152 (190)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHcCCChhheEEeeecCCCCCcccEEEEEEEEcCCC
Confidence 45567789999999999999999999999999976542 443 344555554443
|
|
| >COG0440 IlvH Acetolactate synthase, small (regulatory) subunit [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.82 E-value=0.19 Score=47.78 Aligned_cols=72 Identities=15% Similarity=0.274 Sum_probs=55.3
Q ss_pred CccEEEEEecCCCCChhhHHhhhhcCCccccceEeeeecCCCcEEEEEEeCC--CCcHHHHHHHhcCCCcceEE
Q 007512 525 EGSIILCRQVDQPGMIGTVGSILGSENVNVSFMSVGRVAPRKHAVMAIGVDE--QPRKETLKKIGDVPAIEEFV 596 (600)
Q Consensus 525 ~~~~Liv~~~D~pG~Ia~V~~iL~~~~INIa~m~v~R~~~g~~al~~i~~D~--~~~~~~l~~l~~~~~v~~v~ 596 (600)
..++|.+.-.|+||++.++.++++..|.||.++.++-.+..+.+-|.+-+.. ..-+.+.++|.++=++..|.
T Consensus 3 m~rilsvlv~ne~GvLsRv~glfsrRG~NIeSltv~~tE~~~~SRiTivv~g~~~~~EQi~kQL~kLidV~kV~ 76 (163)
T COG0440 3 MRRILSLLVENEPGVLSRVTGLFSRRGYNIESLTVGPTETPGLSRITIVVSGDEQVLEQIIKQLNKLIDVLKVL 76 (163)
T ss_pred ceEEEEEEEECCCCeeehhhHHHHhcCcccceEEEEecCCCCceEEEEEEcCCcchHHHHHHHHHhhccceeEE
Confidence 3577878888999999999999999999999999998777777766666555 33456666666665555543
|
|
| >COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.80 E-value=0.14 Score=54.00 Aligned_cols=64 Identities=17% Similarity=0.328 Sum_probs=48.0
Q ss_pred CEEEEEecChhHH-HHHHHhhcCC--CEEE-EECCCCC--hhHHHHcCCc--ccCHHHHhcc--CCEEEEecCC
Q 007512 198 KTLAVLGFGKVGS-EVARRAKGLG--MHVI-AHDPYAP--ADRARAIGVD--LVSFDEAIAT--ADFISLHMPL 261 (600)
Q Consensus 198 ktiGIIGlG~IG~-~vA~~l~~~g--~~V~-~~d~~~~--~~~a~~~g~~--~~~l~ell~~--aDvV~l~~Pl 261 (600)
.++||||+|.|++ ..+..++..+ +.+. .+|++.. ...+.+.|+. +.+++++++. .|+|++|+|.
T Consensus 4 irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~iD~V~Iatp~ 77 (342)
T COG0673 4 IRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRDPERAEAFAEEFGIAKAYTDLEELLADPDIDAVYIATPN 77 (342)
T ss_pred eEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEcCCC
Confidence 4899999997775 4777887765 4554 4688773 3456677874 5589999986 5999999993
|
|
| >PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase | Back alignment and domain information |
|---|
Probab=93.78 E-value=0.18 Score=61.24 Aligned_cols=66 Identities=17% Similarity=0.304 Sum_probs=46.4
Q ss_pred cCCEEEEEecChhHHHHHHHhhcC-CCE-------------EEEECCCCChhH--HHHc-CC---c--ccCHHH---Hhc
Q 007512 196 VGKTLAVLGFGKVGSEVARRAKGL-GMH-------------VIAHDPYAPADR--ARAI-GV---D--LVSFDE---AIA 250 (600)
Q Consensus 196 ~gktiGIIGlG~IG~~vA~~l~~~-g~~-------------V~~~d~~~~~~~--a~~~-g~---~--~~~l~e---ll~ 250 (600)
+.|+|+|||.|.||+.+|+.|... +.+ |.+.|++..... +... ++ . ..+.++ +++
T Consensus 568 ~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~~~~~v~lDv~D~e~L~~~v~ 647 (1042)
T PLN02819 568 KSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIENAEAVQLDVSDSESLLKYVS 647 (1042)
T ss_pred cCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhcCCCceEEeecCCHHHHHHhhc
Confidence 477999999999999999999754 444 888898863222 2222 42 1 224444 446
Q ss_pred cCCEEEEecCC
Q 007512 251 TADFISLHMPL 261 (600)
Q Consensus 251 ~aDvV~l~~Pl 261 (600)
++|+|+.|+|.
T Consensus 648 ~~DaVIsalP~ 658 (1042)
T PLN02819 648 QVDVVISLLPA 658 (1042)
T ss_pred CCCEEEECCCc
Confidence 89999999995
|
|
| >PRK05562 precorrin-2 dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.72 E-value=0.15 Score=51.34 Aligned_cols=90 Identities=12% Similarity=0.088 Sum_probs=60.6
Q ss_pred ceeccCCEEEEEecChhHHHHHHHhhcCCCEEEEECCCCChhHH--HHc-CCccc--CH-HHHhccCCEEEEecCCCccc
Q 007512 192 GVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPADRA--RAI-GVDLV--SF-DEAIATADFISLHMPLTPAT 265 (600)
Q Consensus 192 g~~l~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~~~~a--~~~-g~~~~--~l-~ell~~aDvV~l~~Pl~~~t 265 (600)
-..+.|+++.|||-|.++..=++.|..+|.+|.++.|....+.. ... .+.+. ++ .+.+..+++|+.|+....
T Consensus 20 ~l~~~~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~i~~el~~l~~~~~i~~~~r~~~~~dl~g~~LViaATdD~~-- 97 (223)
T PRK05562 20 SLLSNKIKVLIIGGGKAAFIKGKTFLKKGCYVYILSKKFSKEFLDLKKYGNLKLIKGNYDKEFIKDKHLIVIATDDEK-- 97 (223)
T ss_pred EEECCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCCCHHHHHHHhCCCEEEEeCCCChHHhCCCcEEEECCCCHH--
Confidence 34677999999999999999888898999999999998754421 111 23221 11 234578888888876322
Q ss_pred cccccHhHhccCCCceEEEEc
Q 007512 266 SKVLNDETFGKMKKGVRIINV 286 (600)
Q Consensus 266 ~~li~~~~l~~mk~gailvNv 286 (600)
+|+.....++.-.+++|+
T Consensus 98 ---vN~~I~~~a~~~~~lvn~ 115 (223)
T PRK05562 98 ---LNNKIRKHCDRLYKLYID 115 (223)
T ss_pred ---HHHHHHHHHHHcCCeEEE
Confidence 455555555554455664
|
|
| >PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A | Back alignment and domain information |
|---|
Probab=93.70 E-value=0.13 Score=46.31 Aligned_cols=98 Identities=21% Similarity=0.364 Sum_probs=62.0
Q ss_pred CEEEEEe----cChhHHHHHHHhhcCCCEEEEECCCCChhHHHHcCCc-ccCHHHHhccCCEEEEecCCCccccccccHh
Q 007512 198 KTLAVLG----FGKVGSEVARRAKGLGMHVIAHDPYAPADRARAIGVD-LVSFDEAIATADFISLHMPLTPATSKVLNDE 272 (600)
Q Consensus 198 ktiGIIG----lG~IG~~vA~~l~~~g~~V~~~d~~~~~~~a~~~g~~-~~~l~ell~~aDvV~l~~Pl~~~t~~li~~~ 272 (600)
|+|+||| -+..|..+.+.++..|++|+..+|.... -.|.. +.+++|.=...|++++++| .+.+..++.+
T Consensus 1 ksiAVvGaS~~~~~~g~~v~~~l~~~G~~v~~Vnp~~~~----i~G~~~y~sl~e~p~~iDlavv~~~-~~~~~~~v~~- 74 (116)
T PF13380_consen 1 KSIAVVGASDNPGKFGYRVLRNLKAAGYEVYPVNPKGGE----ILGIKCYPSLAEIPEPIDLAVVCVP-PDKVPEIVDE- 74 (116)
T ss_dssp -EEEEET--SSTTSHHHHHHHHHHHTT-EEEEESTTCSE----ETTEE-BSSGGGCSST-SEEEE-S--HHHHHHHHHH-
T ss_pred CEEEEEcccCCCCChHHHHHHHHHhCCCEEEEECCCceE----ECcEEeeccccCCCCCCCEEEEEcC-HHHHHHHHHH-
Confidence 6899999 7899999999999999999999987621 12443 3478884478999999999 3334444433
Q ss_pred HhccCCCceEEEEccCCccccHHHHHHhHhcCCc
Q 007512 273 TFGKMKKGVRIINVARGGVIDEEALVRALDSGRV 306 (600)
Q Consensus 273 ~l~~mk~gailvNvarg~ivde~aL~~aL~~g~i 306 (600)
+..+..+.+++..+ ..++++.+..++..+
T Consensus 75 -~~~~g~~~v~~~~g----~~~~~~~~~a~~~gi 103 (116)
T PF13380_consen 75 -AAALGVKAVWLQPG----AESEELIEAAREAGI 103 (116)
T ss_dssp -HHHHT-SEEEE-TT----S--HHHHHHHHHTT-
T ss_pred -HHHcCCCEEEEEcc----hHHHHHHHHHHHcCC
Confidence 23345677888876 345556666666544
|
|
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=93.69 E-value=0.15 Score=47.20 Aligned_cols=64 Identities=27% Similarity=0.353 Sum_probs=47.9
Q ss_pred cCCEEEEEecChhHHHHHHHhhcCCCEEEEECCCC-ChhHHHHcCCccc--C----HHHHhccCCEEEEecC
Q 007512 196 VGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYA-PADRARAIGVDLV--S----FDEAIATADFISLHMP 260 (600)
Q Consensus 196 ~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~-~~~~a~~~g~~~~--~----l~ell~~aDvV~l~~P 260 (600)
.++++..||+| -|.++|..|...|.+|++.|.+. ..+.+++.+...+ + --++-+.||+|--+=|
T Consensus 16 ~~~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~~~~~v~dDlf~p~~~~y~~a~liysirp 86 (134)
T PRK04148 16 KNKKIVELGIG-FYFKVAKKLKESGFDVIVIDINEKAVEKAKKLGLNAFVDDLFNPNLEIYKNAKLIYSIRP 86 (134)
T ss_pred cCCEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHHHHHHHHHhCCeEEECcCCCCCHHHHhcCCEEEEeCC
Confidence 46899999999 89999999999999999999887 3445666665322 1 1255677777766666
|
|
| >PRK12861 malic enzyme; Reviewed | Back alignment and domain information |
|---|
Probab=93.64 E-value=2.1 Score=50.54 Aligned_cols=120 Identities=19% Similarity=0.131 Sum_probs=91.2
Q ss_pred CceeecCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCccccccccceeccCCEEEEEecChhHHHHHHHhhcCCC--
Q 007512 144 GCLVVNAPTANTVAAAEHGIALLAAMARNVAQADASVKAGKWQRNKYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGM-- 221 (600)
Q Consensus 144 GI~V~n~p~~~~~~vAE~~l~lll~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktiGIIGlG~IG~~vA~~l~~~g~-- 221 (600)
.|.|.|.-- ..+|--+++-+++.+| ..|..+...+|.|.|.|.-|-.+|+.+...|.
T Consensus 157 ~ipvf~DD~---qGTa~v~lA~llnal~------------------~~gk~l~d~~iv~~GAGaAg~~ia~~l~~~G~~~ 215 (764)
T PRK12861 157 KIPVFHDDQ---HGTAITVSAAFINGLK------------------VVGKSIKEVKVVTSGAGAAALACLDLLVDLGLPV 215 (764)
T ss_pred CCCeecccc---chHHHHHHHHHHHHHH------------------HhCCChhHcEEEEECHhHHHHHHHHHHHHcCCCh
Confidence 799999843 2345567777777777 24678889999999999999999999998887
Q ss_pred -EEEEECCCC----------Ch---hHHHHcCCcccCHHHHhccCCEEEEecCCCccccccccHhHhccCCCceEEEEcc
Q 007512 222 -HVIAHDPYA----------PA---DRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVA 287 (600)
Q Consensus 222 -~V~~~d~~~----------~~---~~a~~~g~~~~~l~ell~~aDvV~l~~Pl~~~t~~li~~~~l~~mk~gailvNva 287 (600)
+++.+|.+- .. ..++.. ...+|.|+++.+|+++=. . +-+.++++.+..|.+.++|.=.+
T Consensus 216 ~~i~~~D~~Gli~~~r~~~l~~~k~~~a~~~--~~~~L~eai~~advliG~-S----~~g~ft~e~v~~Ma~~PIIFaLs 288 (764)
T PRK12861 216 ENIWVTDIEGVVYRGRTTLMDPDKERFAQET--DARTLAEVIGGADVFLGL-S----AGGVLKAEMLKAMAARPLILALA 288 (764)
T ss_pred hhEEEEcCCCeeeCCCcccCCHHHHHHHhhc--CCCCHHHHHhcCCEEEEc-C----CCCCCCHHHHHHhccCCEEEECC
Confidence 788888432 11 122221 335899999999988653 2 25889999999999999999998
Q ss_pred CCcc
Q 007512 288 RGGV 291 (600)
Q Consensus 288 rg~i 291 (600)
.-..
T Consensus 289 NPtp 292 (764)
T PRK12861 289 NPTP 292 (764)
T ss_pred CCCc
Confidence 7554
|
|
| >PLN02602 lactate dehydrogenase | Back alignment and domain information |
|---|
Probab=93.63 E-value=0.31 Score=52.48 Aligned_cols=89 Identities=16% Similarity=0.235 Sum_probs=55.9
Q ss_pred CEEEEEecChhHHHHHHHhhcCC--CEEEEECCCCChhHHHHcC----------Ccc---cCHHHHhccCCEEEEecCCC
Q 007512 198 KTLAVLGFGKVGSEVARRAKGLG--MHVIAHDPYAPADRARAIG----------VDL---VSFDEAIATADFISLHMPLT 262 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~g--~~V~~~d~~~~~~~a~~~g----------~~~---~~l~ell~~aDvV~l~~Pl~ 262 (600)
++|+|||.|.||..+|-.+...+ -++..+|.......+..+. ... .+. +.+++||+|+++.-..
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~~~~~~~~i~~~~dy-~~~~daDiVVitAG~~ 116 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAAAFLPRTKILASTDY-AVTAGSDLCIVTAGAR 116 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhhhcCCCCEEEeCCCH-HHhCCCCEEEECCCCC
Confidence 69999999999999999987555 4899999865322221111 111 133 4489999999986432
Q ss_pred c---ccc-ccc--cH-------hHhccCCCceEEEEcc
Q 007512 263 P---ATS-KVL--ND-------ETFGKMKKGVRIINVA 287 (600)
Q Consensus 263 ~---~t~-~li--~~-------~~l~~mk~gailvNva 287 (600)
. +++ .++ |. ..+....|++++++++
T Consensus 117 ~k~g~tR~dll~~N~~I~~~i~~~I~~~~p~~ivivvt 154 (350)
T PLN02602 117 QIPGESRLNLLQRNVALFRKIIPELAKYSPDTILLIVS 154 (350)
T ss_pred CCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 1 223 111 11 1233346788888886
|
|
| >PRK13376 pyrB bifunctional aspartate carbamoyltransferase catalytic subunit/aspartate carbamoyltransferase regulatory subunit; Provisional | Back alignment and domain information |
|---|
Probab=93.63 E-value=0.86 Score=51.50 Aligned_cols=61 Identities=18% Similarity=0.235 Sum_probs=47.1
Q ss_pred eccCCEEEEEec---ChhHHHHHHHhhcCC-CEEEEECCCC---Ch---hHHHHcCCc---ccCHHHHhccCCE
Q 007512 194 SLVGKTLAVLGF---GKVGSEVARRAKGLG-MHVIAHDPYA---PA---DRARAIGVD---LVSFDEAIATADF 254 (600)
Q Consensus 194 ~l~gktiGIIGl---G~IG~~vA~~l~~~g-~~V~~~d~~~---~~---~~a~~~g~~---~~~l~ell~~aDv 254 (600)
.+.|++|++||= +++..+++..+..|| ++|....|.. +. +.+++.|.. ..++++.+++||+
T Consensus 171 ~l~glkVa~vGD~~~~rva~Sl~~~l~~~g~~~v~l~~P~~~~~p~~~~~~a~~~G~~v~i~~d~~eav~~AD~ 244 (525)
T PRK13376 171 DNSFIHIALVGDLLHGRTVHSKVNGLKIFKNVKVDLIAPEELAMPEHYVEKMKKNGFEVRIFSSIEEYLSQKDV 244 (525)
T ss_pred CcCCCEEEEECCCCCCcHHHHHHHHHHhcCCcEEEEECCccccCCHHHHHHHHHcCCeEEEEcCHHHHhccCCc
Confidence 477999999998 689999999999998 9999887743 21 233345643 2489999999995
|
|
| >PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=93.62 E-value=0.15 Score=56.28 Aligned_cols=68 Identities=19% Similarity=0.216 Sum_probs=49.1
Q ss_pred ccCCEEEEEecChhHHHHHHHhhcCCCEEEEECCCCChh---HHHH--cCCccc--C-HHHHhccCCEEEEecCCC
Q 007512 195 LVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPAD---RARA--IGVDLV--S-FDEAIATADFISLHMPLT 262 (600)
Q Consensus 195 l~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~~~---~a~~--~g~~~~--~-l~ell~~aDvV~l~~Pl~ 262 (600)
+.+|++.|+|.|.+|.++|+.|...|++|.++|.....+ ...+ .|+... . -+..+..+|+|+..--..
T Consensus 3 ~~~~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~~~~~~~l~~~~~gi~~~~g~~~~~~~~~~d~vv~spgi~ 78 (445)
T PRK04308 3 FQNKKILVAGLGGTGISMIAYLRKNGAEVAAYDAELKPERVAQIGKMFDGLVFYTGRLKDALDNGFDILALSPGIS 78 (445)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCchhHHHHhhccCCcEEEeCCCCHHHHhCCCEEEECCCCC
Confidence 568999999999999999999999999999999765321 1111 365432 1 234557899998854433
|
|
| >PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated | Back alignment and domain information |
|---|
Probab=93.60 E-value=0.14 Score=54.84 Aligned_cols=38 Identities=24% Similarity=0.274 Sum_probs=34.1
Q ss_pred eeccCCEEEEEecChhHHHHHHHhhcCCC-EEEEECCCC
Q 007512 193 VSLVGKTLAVLGFGKVGSEVARRAKGLGM-HVIAHDPYA 230 (600)
Q Consensus 193 ~~l~gktiGIIGlG~IG~~vA~~l~~~g~-~V~~~d~~~ 230 (600)
..|..++|.|||+|.+|..+|+.|...|. ++..+|...
T Consensus 20 ~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (339)
T PRK07688 20 QKLREKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDY 58 (339)
T ss_pred HHhcCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCc
Confidence 46899999999999999999999998887 888988753
|
|
| >PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=93.59 E-value=0.16 Score=56.21 Aligned_cols=107 Identities=22% Similarity=0.189 Sum_probs=63.6
Q ss_pred CCEEEEEecChhHHHHHHHhhcCCCEEEEECCCCCh---hHHHH--cCCccc---CHHHHhccCCEEEEecCCCccc---
Q 007512 197 GKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPA---DRARA--IGVDLV---SFDEAIATADFISLHMPLTPAT--- 265 (600)
Q Consensus 197 gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~~---~~a~~--~g~~~~---~l~ell~~aDvV~l~~Pl~~~t--- 265 (600)
+-+++|+|+|.+|.++|+.|+..|++|.++|..... +...+ .|+... .-.+.+.++|+|+..--..+..
T Consensus 6 ~~~~~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~d~vV~sp~i~~~~p~~ 85 (448)
T PRK03803 6 DGLHIVVGLGKTGLSVVRFLARQGIPFAVMDSREQPPGLDTLAREFPDVELRCGGFDCELLVQASEIIISPGLALDTPAL 85 (448)
T ss_pred CCeEEEEeecHhHHHHHHHHHhCCCeEEEEeCCCCchhHHHHHhhcCCcEEEeCCCChHHhcCCCEEEECCCCCCCCHHH
Confidence 458999999999999999999999999999976432 11222 266442 1234567899887643222211
Q ss_pred -------cccccHhH-hcc-CCCceEEEEccCCccccHHHHHHhHhc
Q 007512 266 -------SKVLNDET-FGK-MKKGVRIINVARGGVIDEEALVRALDS 303 (600)
Q Consensus 266 -------~~li~~~~-l~~-mk~gailvNvarg~ivde~aL~~aL~~ 303 (600)
..++.+.+ +.. ++...+-|-=+.|+.-...-+...|+.
T Consensus 86 ~~a~~~~i~i~~~~el~~~~~~~~~I~VTGT~GKTTTt~li~~iL~~ 132 (448)
T PRK03803 86 RAAAAMGIEVIGDIELFAREAKAPVIAITGSNGKSTVTTLVGEMAKA 132 (448)
T ss_pred HHHHHCCCcEEEHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHHHHh
Confidence 11233322 222 333333333346887555555666654
|
|
| >KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=93.59 E-value=0.28 Score=51.45 Aligned_cols=46 Identities=37% Similarity=0.547 Sum_probs=40.8
Q ss_pred cCCEEEEEecChhHHHHHHHhhcCCC-EEEEECCCC-ChhHHHHcCCc
Q 007512 196 VGKTLAVLGFGKVGSEVARRAKGLGM-HVIAHDPYA-PADRARAIGVD 241 (600)
Q Consensus 196 ~gktiGIIGlG~IG~~vA~~l~~~g~-~V~~~d~~~-~~~~a~~~g~~ 241 (600)
.|.|++|+|||.+|.+++.-++++|. +|++.|-+. ..+.+++.|+.
T Consensus 192 ~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~fGaT 239 (375)
T KOG0022|consen 192 PGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKEFGAT 239 (375)
T ss_pred CCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHhcCcc
Confidence 58999999999999999999999986 899999887 45778888873
|
|
| >TIGR00036 dapB dihydrodipicolinate reductase | Back alignment and domain information |
|---|
Probab=93.53 E-value=0.15 Score=52.75 Aligned_cols=31 Identities=29% Similarity=0.542 Sum_probs=26.1
Q ss_pred CEEEEEe-cChhHHHHHHHhhc-CCCEEEE-ECC
Q 007512 198 KTLAVLG-FGKVGSEVARRAKG-LGMHVIA-HDP 228 (600)
Q Consensus 198 ktiGIIG-lG~IG~~vA~~l~~-~g~~V~~-~d~ 228 (600)
.+|+|+| +|+||+.+++.+.. -++++.+ +|+
T Consensus 2 ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~ 35 (266)
T TIGR00036 2 IKVAVAGAAGRMGRELIKAALAAEGLQLVAAFER 35 (266)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEec
Confidence 3799999 79999999999985 4898876 674
|
|
| >PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases | Back alignment and domain information |
|---|
Probab=93.33 E-value=0.058 Score=46.80 Aligned_cols=72 Identities=18% Similarity=0.270 Sum_probs=44.1
Q ss_pred CEEEEEecChhHHHHHHHhh-cCCCEEE-EECCCCChhHHHHcCCccc-CHHHHhcc--CCEEEEecCCCcccccccc
Q 007512 198 KTLAVLGFGKVGSEVARRAK-GLGMHVI-AHDPYAPADRARAIGVDLV-SFDEAIAT--ADFISLHMPLTPATSKVLN 270 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~-~~g~~V~-~~d~~~~~~~a~~~g~~~~-~l~ell~~--aDvV~l~~Pl~~~t~~li~ 270 (600)
.++.|+|.|..|+.++.... ..|+++. ++|..+..--..-.|+... +++++.+. .|+-++++| .+.....+.
T Consensus 4 ~~v~ivGag~~G~a~~~~~~~~~g~~i~~~~dv~~~~~G~~i~gipV~~~~~~l~~~~~i~iaii~VP-~~~a~~~~~ 80 (96)
T PF02629_consen 4 TNVIIVGAGNLGRALLYNGFSMRGFGIVAVFDVDPEKIGKEIGGIPVYGSMDELEEFIEIDIAIITVP-AEAAQEVAD 80 (96)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHHCECEEEEEEECTTTTTSEETTEEEESSHHHHHHHCTTSEEEEES--HHHHHHHHH
T ss_pred CeEEEECCCCcHHHHHHhHHHHcCCCCEEEEEcCCCccCcEECCEEeeccHHHhhhhhCCCEEEEEcC-HHHHHHHHH
Confidence 47999999999999985554 4465543 3444332111111255555 77777776 999999999 333444443
|
; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D .... |
| >TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=93.30 E-value=0.23 Score=51.07 Aligned_cols=45 Identities=31% Similarity=0.471 Sum_probs=36.8
Q ss_pred cCCEEEEEecChhHHHHHHHhhcCCCE-EEEECCCC-ChhHHHHcCC
Q 007512 196 VGKTLAVLGFGKVGSEVARRAKGLGMH-VIAHDPYA-PADRARAIGV 240 (600)
Q Consensus 196 ~gktiGIIGlG~IG~~vA~~l~~~g~~-V~~~d~~~-~~~~a~~~g~ 240 (600)
.|+++.|+|.|.||...++.++.+|.+ |++.|+.. ..+.+++.|+
T Consensus 120 ~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga 166 (280)
T TIGR03366 120 KGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSFGA 166 (280)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCC
Confidence 588999999999999999999999986 88887665 3445566665
|
This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds. |
| >COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.28 E-value=0.24 Score=51.70 Aligned_cols=96 Identities=19% Similarity=0.272 Sum_probs=62.9
Q ss_pred eeccCCEEEEEecChhHHHHHHHhhcCCC-EEEEECCCCCh--hHHHHcC---C--cccCHHHH--hccCCEEEEecCCC
Q 007512 193 VSLVGKTLAVLGFGKVGSEVARRAKGLGM-HVIAHDPYAPA--DRARAIG---V--DLVSFDEA--IATADFISLHMPLT 262 (600)
Q Consensus 193 ~~l~gktiGIIGlG~IG~~vA~~l~~~g~-~V~~~d~~~~~--~~a~~~g---~--~~~~l~el--l~~aDvV~l~~Pl~ 262 (600)
....|+++.|+|.|-.+++++..|+..|. +|.++++..+. +.+...+ . ....+.++ +.++|+|+.++|+.
T Consensus 122 ~~~~~~~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt~~ra~~La~~~~~~~~~~~~~~~~~~~~~~~~dliINaTp~G 201 (283)
T COG0169 122 VDVTGKRVLILGAGGAARAVAFALAEAGAKRITVVNRTRERAEELADLFGELGAAVEAAALADLEGLEEADLLINATPVG 201 (283)
T ss_pred cccCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhcccccccccccccccccccCEEEECCCCC
Confidence 45679999999999999999999999995 89999987632 2222222 1 12222222 22699999999965
Q ss_pred cccc---ccccHhHhccCCCceEEEEccCCcc
Q 007512 263 PATS---KVLNDETFGKMKKGVRIINVARGGV 291 (600)
Q Consensus 263 ~~t~---~li~~~~l~~mk~gailvNvarg~i 291 (600)
-.-. ..++ ...++++.++.|+--.+.
T Consensus 202 m~~~~~~~~~~---~~~l~~~~~v~D~vY~P~ 230 (283)
T COG0169 202 MAGPEGDSPVP---AELLPKGAIVYDVVYNPL 230 (283)
T ss_pred CCCCCCCCCCc---HHhcCcCCEEEEeccCCC
Confidence 3221 1222 344677778877765443
|
|
| >PRK14027 quinate/shikimate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.17 E-value=0.32 Score=50.80 Aligned_cols=69 Identities=25% Similarity=0.250 Sum_probs=48.1
Q ss_pred eccCCEEEEEecChhHHHHHHHhhcCCC-EEEEECCCCChh--HHHHc----CC---cccC---HHHHhccCCEEEEecC
Q 007512 194 SLVGKTLAVLGFGKVGSEVARRAKGLGM-HVIAHDPYAPAD--RARAI----GV---DLVS---FDEAIATADFISLHMP 260 (600)
Q Consensus 194 ~l~gktiGIIGlG~IG~~vA~~l~~~g~-~V~~~d~~~~~~--~a~~~----g~---~~~~---l~ell~~aDvV~l~~P 260 (600)
.+.||++.|+|.|-.|++++-.|...|+ +|..+|+..... .+... +. ...+ +++.+..+|+|+.++|
T Consensus 124 ~~~~k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~~~divINaTp 203 (283)
T PRK14027 124 NAKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVGREAVVGVDARGIEDVIAAADGVVNATP 203 (283)
T ss_pred CcCCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhccCcceEEecCHhHHHHHHhhcCEEEEcCC
Confidence 3558999999999999999999998887 788999865221 11111 11 1112 2345677899999988
Q ss_pred CC
Q 007512 261 LT 262 (600)
Q Consensus 261 l~ 262 (600)
+.
T Consensus 204 ~G 205 (283)
T PRK14027 204 MG 205 (283)
T ss_pred CC
Confidence 54
|
|
| >PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=93.16 E-value=0.21 Score=55.82 Aligned_cols=109 Identities=17% Similarity=0.203 Sum_probs=65.0
Q ss_pred ccCCEEEEEecChhHHHHHHHhhcCCCEEEEECCCCC--hhH--HHHcCCccc---CHHHHhccCCEEEEecCCCccc--
Q 007512 195 LVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAP--ADR--ARAIGVDLV---SFDEAIATADFISLHMPLTPAT-- 265 (600)
Q Consensus 195 l~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~--~~~--a~~~g~~~~---~l~ell~~aDvV~l~~Pl~~~t-- 265 (600)
+.||+++|+|+|.-|.+.|+.|+..|.+|+++|.... ... ..+.+.... .-.+.+.++|+|+..--..+..
T Consensus 6 ~~~~~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~vV~SpgI~~~~p~ 85 (468)
T PRK04690 6 LEGRRVALWGWGREGRAAYRALRAHLPAQALTLFCNAVEAREVGALADAALLVETEASAQRLAAFDVVVKSPGISPYRPE 85 (468)
T ss_pred cCCCEEEEEccchhhHHHHHHHHHcCCEEEEEcCCCcccchHHHHHhhcCEEEeCCCChHHccCCCEEEECCCCCCCCHH
Confidence 4689999999999999999999999999999996531 111 111132221 1235678899997754322211
Q ss_pred --------cccccHhHh--cc-CC-----CceEEEEccCCccccHHHHHHhHhc
Q 007512 266 --------SKVLNDETF--GK-MK-----KGVRIINVARGGVIDEEALVRALDS 303 (600)
Q Consensus 266 --------~~li~~~~l--~~-mk-----~gailvNvarg~ivde~aL~~aL~~ 303 (600)
..++++-+| .. ++ ...+-|-=+.|+.-...-+...|+.
T Consensus 86 ~~~a~~~~i~i~~~~el~~~~~~~~~~~~~~~IaITGTnGKTTTt~ll~~iL~~ 139 (468)
T PRK04690 86 ALAAAARGTPFIGGTALWFAEHAARDGVVPGTVCVTGTKGKSTTTALLAHLLRA 139 (468)
T ss_pred HHHHHHcCCcEEEHHHHHHHHHhhccCCCCCEEEEeCCCCHHHHHHHHHHHHHh
Confidence 123444443 22 32 1233333346777555555555654
|
|
| >TIGR02355 moeB molybdopterin synthase sulfurylase MoeB | Back alignment and domain information |
|---|
Probab=93.14 E-value=0.1 Score=53.05 Aligned_cols=38 Identities=16% Similarity=0.307 Sum_probs=33.0
Q ss_pred eeccCCEEEEEecChhHHHHHHHhhcCCC-EEEEECCCC
Q 007512 193 VSLVGKTLAVLGFGKVGSEVARRAKGLGM-HVIAHDPYA 230 (600)
Q Consensus 193 ~~l~gktiGIIGlG~IG~~vA~~l~~~g~-~V~~~d~~~ 230 (600)
..|.+++|.|+|+|-+|..+|+.|...|. ++..+|+..
T Consensus 20 ~~L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ 58 (240)
T TIGR02355 20 EALKASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDT 58 (240)
T ss_pred HHHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCc
Confidence 46899999999999999999999998875 778888654
|
This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899). |
| >TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=93.10 E-value=0.25 Score=52.33 Aligned_cols=46 Identities=28% Similarity=0.281 Sum_probs=39.0
Q ss_pred cCCEEEEEecChhHHHHHHHhhcCCCEEEEECCCC-ChhHHHHcCCc
Q 007512 196 VGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYA-PADRARAIGVD 241 (600)
Q Consensus 196 ~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~-~~~~a~~~g~~ 241 (600)
.|.++.|.|.|.+|...++.++..|.+|++.+++. ..+.++++|+.
T Consensus 165 ~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a~~~Ga~ 211 (329)
T TIGR02822 165 PGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARRLALALGAA 211 (329)
T ss_pred CCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHhCCc
Confidence 37899999999999999999999999999988765 45667788874
|
Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized. |
| >PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A | Back alignment and domain information |
|---|
Probab=93.09 E-value=0.19 Score=46.70 Aligned_cols=80 Identities=30% Similarity=0.467 Sum_probs=49.2
Q ss_pred EEEEecChhHHHHHHHhhcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEecCCCccccccccHhHhccCCC
Q 007512 200 LAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPADRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVLNDETFGKMKK 279 (600)
Q Consensus 200 iGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Pl~~~t~~li~~~~l~~mk~ 279 (600)
+-|+|-|.+++.+++.++.+|++|.++|++.. .++.++-+ .+.+... +. +.+ .+.+
T Consensus 1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~e----------------~~~~~~~~-~~~~~~~----~~--~~~-~~~~ 56 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAALLGFRVTVVDPRPE----------------RFPEADEV-ICIPPDD----IL--EDL-EIDP 56 (136)
T ss_dssp EEEES-STCHHHHHHHHHHCTEEEEEEES-CC----------------C-TTSSEE-ECSHHHH----HH--HHC--S-T
T ss_pred CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCcc----------------ccCCCCcc-EecChHH----HH--hcc-CCCC
Confidence 46899999999999999999999999999842 11244443 2332111 00 112 3566
Q ss_pred ceEEEEccCCccccHHHHHHhHhcC
Q 007512 280 GVRIINVARGGVIDEEALVRALDSG 304 (600)
Q Consensus 280 gailvNvarg~ivde~aL~~aL~~g 304 (600)
+..+| +.++.-.|.+.|..+|+..
T Consensus 57 ~t~Vv-~th~h~~D~~~L~~~l~~~ 80 (136)
T PF13478_consen 57 NTAVV-MTHDHELDAEALEAALASP 80 (136)
T ss_dssp T-EEE---S-CCCHHHHHHHHTTSS
T ss_pred CeEEE-EcCCchhHHHHHHHHHcCC
Confidence 66666 7888888999888888774
|
|
| >PLN02948 phosphoribosylaminoimidazole carboxylase | Back alignment and domain information |
|---|
Probab=93.05 E-value=0.24 Score=56.78 Aligned_cols=69 Identities=20% Similarity=0.323 Sum_probs=50.2
Q ss_pred eccCCEEEEEecChhHHHHHHHhhcCCCEEEEECCCCChhH--HHHcCC--cccC---HHHHhccCCEEEEecCCC
Q 007512 194 SLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPADR--ARAIGV--DLVS---FDEAIATADFISLHMPLT 262 (600)
Q Consensus 194 ~l~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~~~~--a~~~g~--~~~~---l~ell~~aDvV~l~~Pl~ 262 (600)
....|+|||||-|..|+.+++.++.+|++|+++|+...... ....-+ .+.+ +.++++++|+|+.+....
T Consensus 19 ~~~~k~IgIIGgGqlg~mla~aA~~lG~~Vi~ld~~~~apa~~~AD~~~v~~~~D~~~l~~~a~~~dvIt~e~e~v 94 (577)
T PLN02948 19 GVSETVVGVLGGGQLGRMLCQAASQMGIKVKVLDPLEDCPASSVAARHVVGSFDDRAAVREFAKRCDVLTVEIEHV 94 (577)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhCceeeeCCCCCHHHHHHHHHHCCEEEEecCCC
Confidence 37789999999999999999999999999999998763211 111111 1233 556778899998765543
|
|
| >PRK08644 thiamine biosynthesis protein ThiF; Provisional | Back alignment and domain information |
|---|
Probab=93.04 E-value=0.3 Score=48.74 Aligned_cols=37 Identities=22% Similarity=0.243 Sum_probs=32.9
Q ss_pred eeccCCEEEEEecChhHHHHHHHhhcCCC-EEEEECCC
Q 007512 193 VSLVGKTLAVLGFGKVGSEVARRAKGLGM-HVIAHDPY 229 (600)
Q Consensus 193 ~~l~gktiGIIGlG~IG~~vA~~l~~~g~-~V~~~d~~ 229 (600)
..|.+++|.|||+|.+|..+|+.|...|. ++..+|..
T Consensus 24 ~~L~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D 61 (212)
T PRK08644 24 EKLKKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFD 61 (212)
T ss_pred HHHhCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 46899999999999999999999998886 58888876
|
|
| >PRK05086 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.02 E-value=0.48 Score=50.16 Aligned_cols=64 Identities=23% Similarity=0.198 Sum_probs=43.9
Q ss_pred CEEEEEec-ChhHHHHHHHhh---cCCCEEEEECCCCChh----HHHHcC--C--c---ccCHHHHhccCCEEEEecCC
Q 007512 198 KTLAVLGF-GKVGSEVARRAK---GLGMHVIAHDPYAPAD----RARAIG--V--D---LVSFDEAIATADFISLHMPL 261 (600)
Q Consensus 198 ktiGIIGl-G~IG~~vA~~l~---~~g~~V~~~d~~~~~~----~a~~~g--~--~---~~~l~ell~~aDvV~l~~Pl 261 (600)
++|+|||. |.||+.+|..+. ..+.++..+|+....+ ...+.+ . . ..++.+.+++||+|++|+-.
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~~~g~alDl~~~~~~~~i~~~~~~d~~~~l~~~DiVIitaG~ 79 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDPTPALEGADVVLISAGV 79 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCCCcceehhhhcCCCCceEEEeCCCCHHHHcCCCCEEEEcCCC
Confidence 58999999 999999998774 3456888898654210 111111 1 1 12556788999999999864
|
|
| >TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form | Back alignment and domain information |
|---|
Probab=92.83 E-value=0.28 Score=51.80 Aligned_cols=76 Identities=18% Similarity=0.283 Sum_probs=52.9
Q ss_pred EEEEEe-cChhHHHHHHHhhcC-CCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEecCCCccccccccHhHhcc
Q 007512 199 TLAVLG-FGKVGSEVARRAKGL-GMHVIAHDPYAPADRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVLNDETFGK 276 (600)
Q Consensus 199 tiGIIG-lG~IG~~vA~~l~~~-g~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Pl~~~t~~li~~~~l~~ 276 (600)
+|+|+| -|-.|.++.++|..+ .+++........ +...+.+++++++|++|+|+|.. ....+.. .+
T Consensus 3 ~v~IvGasGy~G~el~rlL~~HP~~el~~l~s~~~--------~~~~~~~~~~~~~D~vFlalp~~-~s~~~~~--~~-- 69 (310)
T TIGR01851 3 KVFIDGEAGTTGLQIRERLSGRDDIELLSIAPDRR--------KDAAERAKLLNAADVAILCLPDD-AAREAVS--LV-- 69 (310)
T ss_pred eEEEECCCChhHHHHHHHHhCCCCeEEEEEecccc--------cCcCCHhHhhcCCCEEEECCCHH-HHHHHHH--HH--
Confidence 789997 599999999999977 577776543321 22235667888999999999943 2333321 11
Q ss_pred CCCceEEEEcc
Q 007512 277 MKKGVRIINVA 287 (600)
Q Consensus 277 mk~gailvNva 287 (600)
.+.|+.+||.+
T Consensus 70 ~~~g~~VIDlS 80 (310)
T TIGR01851 70 DNPNTCIIDAS 80 (310)
T ss_pred HhCCCEEEECC
Confidence 25688999987
|
This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment. |
| >PRK10206 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=92.74 E-value=0.24 Score=53.01 Aligned_cols=64 Identities=17% Similarity=0.237 Sum_probs=43.4
Q ss_pred EEEEEecChhHHH-HHHHhh-c-CCCEEEE-ECCCCCh-hHHHHcC-Ccc-cCHHHHhc--cCCEEEEecCCC
Q 007512 199 TLAVLGFGKVGSE-VARRAK-G-LGMHVIA-HDPYAPA-DRARAIG-VDL-VSFDEAIA--TADFISLHMPLT 262 (600)
Q Consensus 199 tiGIIGlG~IG~~-vA~~l~-~-~g~~V~~-~d~~~~~-~~a~~~g-~~~-~~l~ell~--~aDvV~l~~Pl~ 262 (600)
++||||+|.|++. .+..+. . -++++.+ +|+.... +.+...+ +.. .++++++. +.|+|++|+|..
T Consensus 3 rvgiiG~G~~~~~~h~~~~~~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~ell~~~~iD~V~I~tp~~ 75 (344)
T PRK10206 3 NCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPEEQAPIYSHIHFTSDLDEVLNDPDVKLVVVCTHAD 75 (344)
T ss_pred EEEEECCCHHHhheehhhHhcCCCCEEEEEEEcCChhHHHHHHhcCCCcccCCHHHHhcCCCCCEEEEeCCch
Confidence 7999999998864 345443 2 3688875 7876532 2333444 333 47999995 579999999943
|
|
| >PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway | Back alignment and domain information |
|---|
Probab=92.73 E-value=0.13 Score=46.01 Aligned_cols=95 Identities=20% Similarity=0.289 Sum_probs=57.4
Q ss_pred ecChhHHHHHHHhhcC----CCEEEE-ECCC--CChhH-HH-HcCCcccCHHHHhc--cCCEEEEecCCCccccccccHh
Q 007512 204 GFGKVGSEVARRAKGL----GMHVIA-HDPY--APADR-AR-AIGVDLVSFDEAIA--TADFISLHMPLTPATSKVLNDE 272 (600)
Q Consensus 204 GlG~IG~~vA~~l~~~----g~~V~~-~d~~--~~~~~-a~-~~g~~~~~l~ell~--~aDvV~l~~Pl~~~t~~li~~~ 272 (600)
|+|.||+.+++.++.. ++++.+ +|++ ..... .. .......++++++. ..|+|+=|.+..+ +.+-
T Consensus 1 G~G~VG~~l~~~l~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvVE~t~~~~-----~~~~ 75 (117)
T PF03447_consen 1 GFGNVGRGLLEQLKEQQERIDLEVVGVADRSMLISKDWAASFPDEAFTTDLEELIDDPDIDVVVECTSSEA-----VAEY 75 (117)
T ss_dssp --SHHHHHHHHHHHHTHHHCEEEEEEEEESSEEEETTHHHHHTHSCEESSHHHHHTHTT-SEEEE-SSCHH-----HHHH
T ss_pred CCCHHHHHHHHHHHhCcccCCEEEEEEEECCchhhhhhhhhcccccccCCHHHHhcCcCCCEEEECCCchH-----HHHH
Confidence 8999999999999854 677766 5665 11111 11 12233458999988 9999999976332 2233
Q ss_pred HhccCCCceEEEEccCCcccc---HHHHHHhHhc
Q 007512 273 TFGKMKKGVRIINVARGGVID---EEALVRALDS 303 (600)
Q Consensus 273 ~l~~mk~gailvNvarg~ivd---e~aL~~aL~~ 303 (600)
....|+.|.-+|-++.+.+.| .+.|.++.++
T Consensus 76 ~~~~L~~G~~VVt~nk~ala~~~~~~~L~~~A~~ 109 (117)
T PF03447_consen 76 YEKALERGKHVVTANKGALADEALYEELREAARK 109 (117)
T ss_dssp HHHHHHTTCEEEES-HHHHHSHHHHHHHHHHHHH
T ss_pred HHHHHHCCCeEEEECHHHhhhHHHHHHHHHHHHH
Confidence 344567888888888888772 4445444443
|
Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D .... |
| >PRK14805 ornithine carbamoyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=92.72 E-value=1.8 Score=45.62 Aligned_cols=65 Identities=28% Similarity=0.247 Sum_probs=47.1
Q ss_pred eccCCEEEEEecC-hhHHHHHHHhhcCCCEEEEECCCC--Chh--------HHHHcCCcc---cCHHHHhccCCEEEEec
Q 007512 194 SLVGKTLAVLGFG-KVGSEVARRAKGLGMHVIAHDPYA--PAD--------RARAIGVDL---VSFDEAIATADFISLHM 259 (600)
Q Consensus 194 ~l~gktiGIIGlG-~IG~~vA~~l~~~g~~V~~~d~~~--~~~--------~a~~~g~~~---~~l~ell~~aDvV~l~~ 259 (600)
.+.|+||++||=+ ++..+.+..+..+|++|....|.. +.. .++..|... .++ +.++.||+|..-.
T Consensus 144 ~l~g~kva~vGD~~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~~~~~~a~~~~~~~g~~~~~~~d~-~a~~~aDvvy~~~ 222 (302)
T PRK14805 144 DVSKVKLAYVGDGNNVTHSLMYGAAILGATMTVICPPGHFPDGQIVAEAQELAAKSGGKLVLTSDI-EAIEGHDAIYTDT 222 (302)
T ss_pred CcCCcEEEEEcCCCccHHHHHHHHHHcCCEEEEECCchhcCCHHHHHHHHHHHHHcCCEEEEEcCH-HHHCCCCEEEeec
Confidence 4789999999984 567888888999999999988754 211 123346542 354 5799999998833
|
|
| >TIGR01761 thiaz-red thiazolinyl imide reductase | Back alignment and domain information |
|---|
Probab=92.68 E-value=0.35 Score=51.87 Aligned_cols=63 Identities=13% Similarity=0.125 Sum_probs=49.9
Q ss_pred CEEEEEecChhHHHHHHHhhcC--CCEEEE-ECCCCC--hhHHHHcCCc-ccCHHHHhccCCEEEEecCC
Q 007512 198 KTLAVLGFGKVGSEVARRAKGL--GMHVIA-HDPYAP--ADRARAIGVD-LVSFDEAIATADFISLHMPL 261 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~--g~~V~~-~d~~~~--~~~a~~~g~~-~~~l~ell~~aDvV~l~~Pl 261 (600)
.+|||||. .+|+.-++.++.. ++++.+ +|+... .+.+.+.|+. +.++++++.+.|++++++|.
T Consensus 4 ~rVgViG~-~~G~~h~~al~~~~~~~eLvaV~d~~~erA~~~A~~~gi~~y~~~eell~d~Di~~V~ipt 72 (343)
T TIGR01761 4 QSVVVCGT-RFGQFYLAAFAAAPERFELAGILAQGSERSRALAHRLGVPLYCEVEELPDDIDIACVVVRS 72 (343)
T ss_pred cEEEEEeH-HHHHHHHHHHHhCCCCcEEEEEEcCCHHHHHHHHHHhCCCccCCHHHHhcCCCEEEEEeCC
Confidence 58999999 6799999888765 578776 687652 3456667875 46899999999999999984
|
This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG). |
| >PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=92.62 E-value=0.3 Score=53.84 Aligned_cols=108 Identities=18% Similarity=0.180 Sum_probs=64.0
Q ss_pred ccCCEEEEEecChhHHHHHHHhhcCCCEEEEECCCCChh--HHHHcCCccc---CHHHHhccCCEEEEecCCCccccc--
Q 007512 195 LVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPAD--RARAIGVDLV---SFDEAIATADFISLHMPLTPATSK-- 267 (600)
Q Consensus 195 l~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~~~--~a~~~g~~~~---~l~ell~~aDvV~l~~Pl~~~t~~-- 267 (600)
+.++++.|+|+|..|.+.++.|+..|.+|.++|...... ...+.|+... .-.+.+..+|+|+. .|-.+....
T Consensus 4 ~~~~~i~v~G~G~sG~s~~~~l~~~G~~v~~~D~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~d~vv~-spgi~~~~~~~ 82 (438)
T PRK03806 4 YQGKKVVIIGLGLTGLSCVDFFLARGVTPRVIDTRITPPGLDKLPENVERHTGSLNDEWLLAADLIVA-SPGIALAHPSL 82 (438)
T ss_pred cCCCEEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCCCchhHHHHhcCCEEEeCCCCHHHhcCCCEEEE-CCCCCCCCHHH
Confidence 568899999999999999999999999999999765322 1223365432 12245677896654 453332211
Q ss_pred ---------cccH-hHhcc-CCCceEEEEccCCccccHHHHHHhHhc
Q 007512 268 ---------VLND-ETFGK-MKKGVRIINVARGGVIDEEALVRALDS 303 (600)
Q Consensus 268 ---------li~~-~~l~~-mk~gailvNvarg~ivde~aL~~aL~~ 303 (600)
++.+ +.+.. ++.-.+-|-=+.|+.-...-+...|+.
T Consensus 83 ~~a~~~g~~v~~~~el~~~~~~~~~I~VTGTnGKTTTt~ll~~iL~~ 129 (438)
T PRK03806 83 SAAADAGIEIVGDIELFCREAQAPIVAITGSNGKSTVTTLVGEMAKA 129 (438)
T ss_pred HHHHHCCCeEEEHHHHHhhhcCCCEEEEeCCCCHHHHHHHHHHHHHH
Confidence 2222 22222 222223333336777555555666654
|
|
| >PRK03815 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=92.58 E-value=0.27 Score=53.94 Aligned_cols=104 Identities=13% Similarity=0.143 Sum_probs=60.5
Q ss_pred CEEEEEecChhHHHHHHHhhcCCCEEEEECCCCChhHHHHcCCcccCHHHHh--ccCCEEEEecCCCccc------cccc
Q 007512 198 KTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPADRARAIGVDLVSFDEAI--ATADFISLHMPLTPAT------SKVL 269 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~~~~a~~~g~~~~~l~ell--~~aDvV~l~~Pl~~~t------~~li 269 (600)
+++.|+|+|..|.++|+.|+ .|.+|.++|.........+.|+...+ ++.+ .++|+|+..--..+.. +.++
T Consensus 1 ~~v~v~G~G~sG~a~a~~L~-~G~~V~~~D~~~~~~~~~~~gi~~~~-~~~~~~~~~d~vv~sp~i~~~~~~~~~a~~i~ 78 (401)
T PRK03815 1 MKISLFGYGKTTKALAKFLK-KFGGVDIFDDKFTESHKDEEGNLLLP-SNDFDPNKSDLEIPSPGIPPSHPLIQKAKNLI 78 (401)
T ss_pred CeEEEEeECHHHHHHHHHHh-CCCeEEEEcCCCCccchhhcCCEEec-HHHcCcCCCCEEEECCCCCCCCHHHHHHHHHh
Confidence 36899999999999999999 99999999955422222334665432 2234 4699886652222211 1223
Q ss_pred cHhHh-ccCCCceEEEEccCCccccHHHHHHhHhc
Q 007512 270 NDETF-GKMKKGVRIINVARGGVIDEEALVRALDS 303 (600)
Q Consensus 270 ~~~~l-~~mk~gailvNvarg~ivde~aL~~aL~~ 303 (600)
.+-.+ ..+.+..+-|-=+.|+.-..+-+...|+.
T Consensus 79 ~~~e~~~~~~~~~i~ITGT~GKTTTt~ml~~iL~~ 113 (401)
T PRK03815 79 SEYDYFYDVMPFSIWISGTNGKTTTTQMTTHLLED 113 (401)
T ss_pred hHHHHHHHhcCCEEEEECCCcHHHHHHHHHHHHHH
Confidence 33322 22222234343346887655555666664
|
|
| >PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional | Back alignment and domain information |
|---|
Probab=92.58 E-value=0.24 Score=57.34 Aligned_cols=88 Identities=18% Similarity=0.276 Sum_probs=61.0
Q ss_pred CCEEEEEecChhHHHHHHHhhcCCCEEEEECCCC-ChhHHHHcCCccc-----CHH----HHhccCCEEEEecCCCcccc
Q 007512 197 GKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYA-PADRARAIGVDLV-----SFD----EAIATADFISLHMPLTPATS 266 (600)
Q Consensus 197 gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~-~~~~a~~~g~~~~-----~l~----ell~~aDvV~l~~Pl~~~t~ 266 (600)
...+-|+|+|++|+.+|+.|++.|.++++.|.++ ..+.+++.|.... +.+ .-+.+||.++++++..+.+.
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vvv~~~d~~~n~ 479 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAIDDPQTSL 479 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhcCCeEEEEeCCCHHHHHhcCCCcCCEEEEEeCCHHHHH
Confidence 4689999999999999999999999999999877 3455666776422 222 23568999999998555443
Q ss_pred ccccHhHhccCCCceEEEEc
Q 007512 267 KVLNDETFGKMKKGVRIINV 286 (600)
Q Consensus 267 ~li~~~~l~~mk~gailvNv 286 (600)
.+. .....+.|+..++--
T Consensus 480 ~i~--~~ar~~~p~~~iiaR 497 (621)
T PRK03562 480 QLV--ELVKEHFPHLQIIAR 497 (621)
T ss_pred HHH--HHHHHhCCCCeEEEE
Confidence 332 223334556555443
|
|
| >cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively | Back alignment and domain information |
|---|
Probab=92.50 E-value=0.21 Score=52.37 Aligned_cols=85 Identities=27% Similarity=0.357 Sum_probs=55.8
Q ss_pred EEEEEecChhHHHHHHHhhcCCC-EEEEECCCC-C-----------hhH----------H----HHc--CCcc--c----
Q 007512 199 TLAVLGFGKVGSEVARRAKGLGM-HVIAHDPYA-P-----------ADR----------A----RAI--GVDL--V---- 243 (600)
Q Consensus 199 tiGIIGlG~IG~~vA~~l~~~g~-~V~~~d~~~-~-----------~~~----------a----~~~--g~~~--~---- 243 (600)
+|.|+|.|-+|..+|+.|...|. ++..+|... . .+. + ++. +++. .
T Consensus 1 kVLIvGaGGLGs~vA~~La~aGVg~ItlvD~D~Ve~sNL~RQ~L~~~~D~~iGk~Ka~aaa~~L~~iNP~v~v~~~~~~I 80 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGWGVRHITFVDSGKVSYSNPVRQSLFTFEDCKGGKPKAEAAAERLKEIFPSIDATGIVLSI 80 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEeccccCCcccccccchhhcCccHHHHHHHHHHHHCCCcEEEEeeeec
Confidence 58999999999999999998886 677777421 0 000 0 011 1110 0
Q ss_pred --------------------CHHHHhccCCEEEEecCCCccccccccHhHhccCCCceEEEEcc
Q 007512 244 --------------------SFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVA 287 (600)
Q Consensus 244 --------------------~l~ell~~aDvV~l~~Pl~~~t~~li~~~~l~~mk~gailvNva 287 (600)
.++++++++|+|+.++- +-+++.+++..-.. .+..+||.+
T Consensus 81 pmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~d~tD-n~esR~L~~~~~~~---~~k~~I~aa 140 (307)
T cd01486 81 PMPGHPISESEVPSTLKDVKRLEELIKDHDVIFLLTD-SRESRWLPTLLSAA---KNKLVINAA 140 (307)
T ss_pred cccccccccccccccccCHHHHHHHHhhCCEEEECCC-CHHHHHHHHHHHHH---hCCcEEEEE
Confidence 14678999999999995 66678777665443 233677765
|
This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole. |
| >PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase | Back alignment and domain information |
|---|
Probab=92.46 E-value=0.18 Score=54.73 Aligned_cols=62 Identities=27% Similarity=0.356 Sum_probs=43.0
Q ss_pred EEEEecChhHHHHHHHhhcCC-C-EEEEECCCCCh-hHHHH--c--CCcc--------cCHHHHhccCCEEEEecCC
Q 007512 200 LAVLGFGKVGSEVARRAKGLG-M-HVIAHDPYAPA-DRARA--I--GVDL--------VSFDEAIATADFISLHMPL 261 (600)
Q Consensus 200 iGIIGlG~IG~~vA~~l~~~g-~-~V~~~d~~~~~-~~a~~--~--g~~~--------~~l~ell~~aDvV~l~~Pl 261 (600)
|+|+|.|.+|+.+++.|...+ + +|++.|++... +...+ . .+.. .+|+++++++|+|+.|+|-
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~dvVin~~gp 77 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKLLGDRVEAVQVDVNDPESLAELLRGCDVVINCAGP 77 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT--TTTTEEEEE--TTTHHHHHHHHTTSSEEEE-SSG
T ss_pred CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhccccceeEEEEecCCHHHHHHHHhcCCEEEECCcc
Confidence 789999999999999998764 5 89999988633 22211 1 1211 1377899999999999974
|
Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A. |
| >cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity | Back alignment and domain information |
|---|
Probab=92.43 E-value=0.32 Score=51.43 Aligned_cols=63 Identities=16% Similarity=0.292 Sum_probs=43.5
Q ss_pred CEEEEEec-ChhHHHHHHHhhcCCC--EEEEECCCCChhHH--H---------HcCC--cc---cCHHHHhccCCEEEEe
Q 007512 198 KTLAVLGF-GKVGSEVARRAKGLGM--HVIAHDPYAPADRA--R---------AIGV--DL---VSFDEAIATADFISLH 258 (600)
Q Consensus 198 ktiGIIGl-G~IG~~vA~~l~~~g~--~V~~~d~~~~~~~a--~---------~~g~--~~---~~l~ell~~aDvV~l~ 258 (600)
++|+|+|. |.+|..+|..+...|. +|+.+|+....+.+ . ..+. .. .+. +.+++||+|+++
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~~~~~l~~~~~dl~d~~~~~~~~~~i~~~~d~-~~l~~aDiViit 79 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIYDALAAAGIDAEIKISSDL-SDVAGSDIVIIT 79 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcccccccccccchhhhchhccCCCcEEEECCCH-HHhCCCCEEEEe
Confidence 58999998 9999999999986664 69999984311111 0 1111 11 133 459999999999
Q ss_pred cCC
Q 007512 259 MPL 261 (600)
Q Consensus 259 ~Pl 261 (600)
...
T Consensus 80 ag~ 82 (309)
T cd05294 80 AGV 82 (309)
T ss_pred cCC
Confidence 873
|
The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox |
| >TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein | Back alignment and domain information |
|---|
Probab=92.39 E-value=0.29 Score=52.32 Aligned_cols=60 Identities=28% Similarity=0.417 Sum_probs=43.8
Q ss_pred EEEEEecChhHHHHHHHhhcCCCEEEEECCCCCh-h-HHHHcCC--cccC---HHHHhccCCEEEEe
Q 007512 199 TLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPA-D-RARAIGV--DLVS---FDEAIATADFISLH 258 (600)
Q Consensus 199 tiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~~-~-~a~~~g~--~~~~---l~ell~~aDvV~l~ 258 (600)
||||||-|..|+.+++.++.+|++|+++|++... . .....-+ .+.+ +.++++.||+|+..
T Consensus 1 ~igiiG~gql~~~l~~aa~~lG~~v~~~d~~~~~p~~~~ad~~~~~~~~d~~~i~~~a~~~dvit~e 67 (352)
T TIGR01161 1 TVGILGGGQLGRMLALAARPLGIKVHVLDPDANSPAVQVADHVVLAPFFDPAAIRELAESCDVITFE 67 (352)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCEEEEECCCCCCChhHhCceeEeCCCCCHHHHHHHHhhCCEEEeC
Confidence 5999999999999999999999999999987622 1 1111111 2223 66788899998553
|
Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, N5-carboxyaminoimidazole ribonucleotide synthetase, which hydrolyzes ATP and converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. |
| >cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein) | Back alignment and domain information |
|---|
Probab=92.38 E-value=0.31 Score=40.45 Aligned_cols=56 Identities=14% Similarity=0.144 Sum_probs=40.0
Q ss_pred EEecCCCCChhhHHhhhhcCCccccceEeeeecCCCcEEEEEEeC---CC-CcHHHHHHHh
Q 007512 531 CRQVDQPGMIGTVGSILGSENVNVSFMSVGRVAPRKHAVMAIGVD---EQ-PRKETLKKIG 587 (600)
Q Consensus 531 v~~~D~pG~Ia~V~~iL~~~~INIa~m~v~R~~~g~~al~~i~~D---~~-~~~~~l~~l~ 587 (600)
+..+|+||..+.++..|.++|+||...++... .++.++=.+-+. .. .+++.+++|+
T Consensus 5 i~~~Dr~gLfa~i~~~l~~~~l~I~~A~I~Tt-~~~~v~D~F~V~d~~~~~~~~~~~~~l~ 64 (76)
T cd04927 5 LFCSDRKGLLHDVTEVLYELELTIERVKVSTT-PDGRVLDLFFITDARELLHTKKRREETY 64 (76)
T ss_pred EEECCCCCHHHHHHHHHHHCCCeEEEEEEEEC-CCCEEEEEEEEeCCCCCCCCHHHHHHHH
Confidence 55789999999999999999999999999753 555654444442 22 2445555554
|
This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains. |
| >PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=92.36 E-value=0.34 Score=53.94 Aligned_cols=107 Identities=20% Similarity=0.195 Sum_probs=61.3
Q ss_pred cCCEEEEEecChhHHHHHHHhhcCCCEEEEECCCCCh-hHHHHc-CCcc--cCHHHHhccCCEEEEecCCCccc------
Q 007512 196 VGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPA-DRARAI-GVDL--VSFDEAIATADFISLHMPLTPAT------ 265 (600)
Q Consensus 196 ~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~~-~~a~~~-g~~~--~~l~ell~~aDvV~l~~Pl~~~t------ 265 (600)
.||+++|+|+|.-|.++|+.|+. |.+|+++|..... ....+. .... ..-.+.+.++|+|+..--..+..
T Consensus 5 ~~~~v~v~G~G~sG~a~~~~L~~-g~~v~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vV~SPgI~~~~p~~~~a 83 (454)
T PRK01368 5 TKQKIGVFGLGKTGISVYEELQN-KYDVIVYDDLKANRDIFEELYSKNAIAALSDSRWQNLDKIVLSPGIPLTHEIVKIA 83 (454)
T ss_pred CCCEEEEEeecHHHHHHHHHHhC-CCEEEEECCCCCchHHHHhhhcCceeccCChhHhhCCCEEEECCCCCCCCHHHHHH
Confidence 47899999999999999999995 9999999954321 111111 1111 11234567899887754222211
Q ss_pred ----cccccHhHh--ccCCCceEEEEcc-CCccccHHHHHHhHhc
Q 007512 266 ----SKVLNDETF--GKMKKGVRIINVA-RGGVIDEEALVRALDS 303 (600)
Q Consensus 266 ----~~li~~~~l--~~mk~gailvNva-rg~ivde~aL~~aL~~ 303 (600)
..++++-+| ..+++..+|-=+| .|+.-...-+...|+.
T Consensus 84 ~~~gi~v~~e~el~~~~~~~~~~IaVTGTnGKTTTt~ll~~iL~~ 128 (454)
T PRK01368 84 KNFNIPITSDIDLLFEKSKNLKFIAITGTNGKSTTTALISHILNS 128 (454)
T ss_pred HHCCCceecHHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHHHHh
Confidence 123444333 2233222333333 6887655555666664
|
|
| >PRK07877 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=92.32 E-value=0.18 Score=59.01 Aligned_cols=97 Identities=14% Similarity=0.178 Sum_probs=63.3
Q ss_pred eeccCCEEEEEecChhHHHHHHHhhcCCC--EEEEECCCC-Ch---h---------------HH----HHc--CCc----
Q 007512 193 VSLVGKTLAVLGFGKVGSEVARRAKGLGM--HVIAHDPYA-PA---D---------------RA----RAI--GVD---- 241 (600)
Q Consensus 193 ~~l~gktiGIIGlG~IG~~vA~~l~~~g~--~V~~~d~~~-~~---~---------------~a----~~~--g~~---- 241 (600)
..|++++|+|+|+| +|+.+|..|...|. ++..+|... .. . .+ .+. .++
T Consensus 103 ~~L~~~~V~IvG~G-lGs~~a~~LaraGvvG~l~lvD~D~ve~sNLnRq~~~~~diG~~Kv~~a~~~l~~inp~i~v~~~ 181 (722)
T PRK07877 103 ERLGRLRIGVVGLS-VGHAIAHTLAAEGLCGELRLADFDTLELSNLNRVPAGVFDLGVNKAVVAARRIAELDPYLPVEVF 181 (722)
T ss_pred HHHhcCCEEEEEec-HHHHHHHHHHHccCCCeEEEEcCCEEcccccccccCChhhcccHHHHHHHHHHHHHCCCCEEEEE
Confidence 46899999999999 89999999987773 777776432 10 0 01 011 111
Q ss_pred -----ccCHHHHhccCCEEEEecCCCccccccccHhHhccCCCceEEEEccCCcccc
Q 007512 242 -----LVSFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVID 293 (600)
Q Consensus 242 -----~~~l~ell~~aDvV~l~~Pl~~~t~~li~~~~l~~mk~gailvNvarg~ivd 293 (600)
..++++++..+|+|+-|+- +-+++.++++.....=+ .+|.-.+-++.++
T Consensus 182 ~~~i~~~n~~~~l~~~DlVvD~~D-~~~~R~~ln~~a~~~~i--P~i~~~~~~g~~~ 235 (722)
T PRK07877 182 TDGLTEDNVDAFLDGLDVVVEECD-SLDVKVLLREAARARRI--PVLMATSDRGLLD 235 (722)
T ss_pred eccCCHHHHHHHhcCCCEEEECCC-CHHHHHHHHHHHHHcCC--CEEEEcCCCCCcC
Confidence 1147788999999998887 55788888877665422 2444444344444
|
|
| >PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B | Back alignment and domain information |
|---|
Probab=92.32 E-value=0.2 Score=47.65 Aligned_cols=63 Identities=25% Similarity=0.287 Sum_probs=47.2
Q ss_pred EEEEe-cChhHHHHHHHhhcCCCEEEEECCCCChhHHHHcCCcc--------cCHHHHhccCCEEEEecCCCc
Q 007512 200 LAVLG-FGKVGSEVARRAKGLGMHVIAHDPYAPADRARAIGVDL--------VSFDEAIATADFISLHMPLTP 263 (600)
Q Consensus 200 iGIIG-lG~IG~~vA~~l~~~g~~V~~~d~~~~~~~a~~~g~~~--------~~l~ell~~aDvV~l~~Pl~~ 263 (600)
|.|+| .|.+|+.+++.|...|.+|.+.-++...... ..+++. .++.+.++.||.|+.+++...
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~-~~~~~~~~~d~~d~~~~~~al~~~d~vi~~~~~~~ 72 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAED-SPGVEIIQGDLFDPDSVKAALKGADAVIHAAGPPP 72 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHH-CTTEEEEESCTTCHHHHHHHHTTSSEEEECCHSTT
T ss_pred eEEECCCChHHHHHHHHHHHCCCEEEEEecCchhccc-ccccccceeeehhhhhhhhhhhhcchhhhhhhhhc
Confidence 57888 5999999999999999999999877532221 334432 135678899999999997544
|
... |
| >COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=92.31 E-value=0.28 Score=51.85 Aligned_cols=139 Identities=16% Similarity=0.162 Sum_probs=79.6
Q ss_pred CEEEEEecChhHHHHHHHhhcCCCEEEEECCCCChhHHHHcCCccc-------------CHHHHhccCCEEEEecCCCcc
Q 007512 198 KTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPADRARAIGVDLV-------------SFDEAIATADFISLHMPLTPA 264 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~~~~a~~~g~~~~-------------~l~ell~~aDvV~l~~Pl~~~ 264 (600)
++|.|+|.|.||+-++.+|...|..|...-+....+..++.|.... .-.+.+..+|+|++++=.. +
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~~~~l~~~GL~i~~~~~~~~~~~~~~~~~~~~~~~Dlviv~vKa~-q 79 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAGHDVTLLVRSRRLEALKKKGLRIEDEGGNFTTPVVAATDAEALGPADLVIVTVKAY-Q 79 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCeEEEEecHHHHHHHHhCCeEEecCCCccccccccccChhhcCCCCEEEEEeccc-c
Confidence 4899999999999999999988877776655444455555564211 2235667899999987633 3
Q ss_pred ccccccHhHhccCCCceEEEEccCCccccHHHHHHhHhcCC-ceEEEEeccCCCCCCCCCccccCCcEEEcCCCCCC
Q 007512 265 TSKVLNDETFGKMKKGVRIINVARGGVIDEEALVRALDSGR-VAQAALDVFTEEPPPADSKLVQHERVTVTPHLGAS 340 (600)
Q Consensus 265 t~~li~~~~l~~mk~gailvNvarg~ivde~aL~~aL~~g~-i~ga~lDv~~~EP~~~~~~L~~~~nvilTPH~~~~ 340 (600)
+...+ +.....+++.+.|+-.--|- =.++.+.......+ +.|...-....+.+ ..-.......+.+.+..+..
T Consensus 80 ~~~al-~~l~~~~~~~t~vl~lqNG~-g~~e~l~~~~~~~~il~G~~~~~a~~~~~-g~v~~~g~g~~~ig~~~~~~ 153 (307)
T COG1893 80 LEEAL-PSLAPLLGPNTVVLFLQNGL-GHEEELRKILPKETVLGGVTTHGAVREGP-GHVVHTGLGDTVIGELRGGR 153 (307)
T ss_pred HHHHH-HHhhhcCCCCcEEEEEeCCC-cHHHHHHHhCCcceEEEEEeeeeeEecCC-ceEEEecCCcEEEccCCCCc
Confidence 44333 33444577776665332222 23445554444443 43332222222211 11233334566677766544
|
|
| >PRK08762 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
Probab=92.30 E-value=0.37 Score=52.30 Aligned_cols=75 Identities=15% Similarity=0.129 Sum_probs=50.7
Q ss_pred hHHHhCCceeecCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCccccccccceeccCCEEEEEecChhHHHHHHHhh
Q 007512 138 AAATEFGCLVVNAPTANTVAAAEHGIALLAAMARNVAQADASVKAGKWQRNKYVGVSLVGKTLAVLGFGKVGSEVARRAK 217 (600)
Q Consensus 138 ~aa~~~GI~V~n~p~~~~~~vAE~~l~lll~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktiGIIGlG~IG~~vA~~l~ 217 (600)
.+.++.|-.+...+......... -+|++ .-+.|... ....|.+++|.|+|+|-+|+.+++.|.
T Consensus 93 ~~W~~~g~p~~~~~~~s~~~~~~--------y~r~i-------~l~~~g~~--~q~~l~~~~VlvvG~GG~Gs~ia~~La 155 (376)
T PRK08762 93 SAWKDAGLPLERPRLLTDEQDER--------YSRHL-------RLPEVGEE--GQRRLLEARVLLIGAGGLGSPAALYLA 155 (376)
T ss_pred HHHHhcCCccccccCCCHHHHHH--------HHHhc-------chhhcCHH--HHHHHhcCcEEEECCCHHHHHHHHHHH
Confidence 45566677777666655444322 22332 22334321 124689999999999999999999999
Q ss_pred cCCC-EEEEECCC
Q 007512 218 GLGM-HVIAHDPY 229 (600)
Q Consensus 218 ~~g~-~V~~~d~~ 229 (600)
..|. ++..+|+.
T Consensus 156 ~~Gvg~i~lvD~d 168 (376)
T PRK08762 156 AAGVGTLGIVDHD 168 (376)
T ss_pred HcCCCeEEEEeCC
Confidence 8887 78888876
|
|
| >PRK05600 thiamine biosynthesis protein ThiF; Validated | Back alignment and domain information |
|---|
Probab=92.29 E-value=0.12 Score=55.89 Aligned_cols=52 Identities=13% Similarity=0.174 Sum_probs=39.3
Q ss_pred HHHHHHcCccccccccceeccCCEEEEEecChhHHHHHHHhhcCCC-EEEEECCC
Q 007512 176 ADASVKAGKWQRNKYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGM-HVIAHDPY 229 (600)
Q Consensus 176 ~~~~~~~g~W~~~~~~g~~l~gktiGIIGlG~IG~~vA~~l~~~g~-~V~~~d~~ 229 (600)
+.++++-..|... ....|.+++|.|||+|-+|..+++.|...|. ++..+|+.
T Consensus 22 y~Rqi~l~~~g~~--~q~~l~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D 74 (370)
T PRK05600 22 TARQLALPGFGIE--QQERLHNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDD 74 (370)
T ss_pred hhcccchhhhCHH--HHHHhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 3344443445432 2357899999999999999999999998886 88888865
|
|
| >cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=92.27 E-value=0.91 Score=45.25 Aligned_cols=89 Identities=28% Similarity=0.341 Sum_probs=54.9
Q ss_pred cCCEEEEEecChhHHHHHHHhhcCCCEEEEECCCC-ChhHHHHcCCcc-c-----CHHHH-----hccCCEEEEecCCCc
Q 007512 196 VGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYA-PADRARAIGVDL-V-----SFDEA-----IATADFISLHMPLTP 263 (600)
Q Consensus 196 ~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~-~~~~a~~~g~~~-~-----~l~el-----l~~aDvV~l~~Pl~~ 263 (600)
.|+++.|.|.|.+|..+++.++..|.+|++.++.. ..+.+...|... . +..+. -...|+++.+++...
T Consensus 134 ~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~~ 213 (271)
T cd05188 134 PGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAKELGADHVIDYKEEDLEEELRLTGGGGADVVIDAVGGPE 213 (271)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHhCCceeccCCcCCHHHHHHHhcCCCCCEEEECCCCHH
Confidence 57899999999999999999999999999998765 233344444321 1 11111 134666666555211
Q ss_pred cccccccHhHhccCCCceEEEEccCC
Q 007512 264 ATSKVLNDETFGKMKKGVRIINVARG 289 (600)
Q Consensus 264 ~t~~li~~~~l~~mk~gailvNvarg 289 (600)
.-...+..|+++..+++++..
T Consensus 214 -----~~~~~~~~l~~~G~~v~~~~~ 234 (271)
T cd05188 214 -----TLAQALRLLRPGGRIVVVGGT 234 (271)
T ss_pred -----HHHHHHHhcccCCEEEEEccC
Confidence 123344556666666666543
|
The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro |
| >PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional | Back alignment and domain information |
|---|
Probab=92.25 E-value=0.32 Score=57.05 Aligned_cols=71 Identities=20% Similarity=0.316 Sum_probs=55.0
Q ss_pred EEEEEecCCCCChhhHHhhhhcCCccccceEeeeecCCCcEEEEEEeC--CCC-cHHHHHHHhcCCCcceEEEe
Q 007512 528 IILCRQVDQPGMIGTVGSILGSENVNVSFMSVGRVAPRKHAVMAIGVD--EQP-RKETLKKIGDVPAIEEFVFL 598 (600)
Q Consensus 528 ~Liv~~~D~pG~Ia~V~~iL~~~~INIa~m~v~R~~~g~~al~~i~~D--~~~-~~~~l~~l~~~~~v~~v~~i 598 (600)
.|.+...|++|+++.|++++++.++||.++++....+++.+.+.+.+. +.- =..++.+|+++++|.+|+-+
T Consensus 668 ~I~I~~~Dr~GlL~dIt~~is~~~~nI~~v~~~~~~~~~~~~~~~~ieV~~~~~L~~l~~~L~~i~~V~~v~R~ 741 (743)
T PRK10872 668 VVRVTANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIEIYNLQVLGRVLGKLNQVPDVIDARRL 741 (743)
T ss_pred EEEEEEcCCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCCEEEEEEEEEECCHHHHHHHHHHHhcCCCcCeEEec
Confidence 456778999999999999999999999999986444456666655443 332 23789999999999998753
|
|
| >TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase | Back alignment and domain information |
|---|
Probab=92.24 E-value=0.6 Score=51.38 Aligned_cols=105 Identities=24% Similarity=0.277 Sum_probs=63.6
Q ss_pred EEEEEecChhHHHHHHHhhcCCCEEEEECCCCCh--hH----HH-HcCCccc--CHHHHhccCCEEEEecCCCcccc---
Q 007512 199 TLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPA--DR----AR-AIGVDLV--SFDEAIATADFISLHMPLTPATS--- 266 (600)
Q Consensus 199 tiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~~--~~----a~-~~g~~~~--~l~ell~~aDvV~l~~Pl~~~t~--- 266 (600)
++.|||+|.+|.++|+.|+..|++|.++|..... .. .. ..|+... .-.+.+.++|+|+..--..+...
T Consensus 1 ~~~~iG~G~~G~a~a~~l~~~G~~V~~sD~~~~~~~~~~~~~~~~~~gi~~~~g~~~~~~~~~d~vv~sp~i~~~~p~~~ 80 (433)
T TIGR01087 1 KILILGLGKTGRAVARFLHKKGAEVTVTDLKPNEELEPSMGQLRLNEGSVLHTGLHLEDLNNADLVVKSPGIPPDHPLVQ 80 (433)
T ss_pred CEEEEEeCHhHHHHHHHHHHCCCEEEEEeCCCCccchhHHHHHhhccCcEEEecCchHHhccCCEEEECCCCCCCCHHHH
Confidence 4789999999999999999999999999975421 11 11 2476542 11455688998876543222111
Q ss_pred -------ccccHhHh-cc-CCCceEEEEccCCccccHHHHHHhHhc
Q 007512 267 -------KVLNDETF-GK-MKKGVRIINVARGGVIDEEALVRALDS 303 (600)
Q Consensus 267 -------~li~~~~l-~~-mk~gailvNvarg~ivde~aL~~aL~~ 303 (600)
.++.+.++ .. ++.-.+-|-=+.|+.-...-+...|+.
T Consensus 81 ~a~~~~i~i~~~~e~~~~~~~~~~I~VTGT~GKTTTt~li~~iL~~ 126 (433)
T TIGR01087 81 AAAKRGIPVVGDIELFLRLVPLPVVAITGTNGKTTTTSLLYHLLKA 126 (433)
T ss_pred HHHHCCCcEEEHHHHHHhhcCCCEEEEECCCCHHHHHHHHHHHHHh
Confidence 12333322 22 333344444457887666655666665
|
|
| >PLN02586 probable cinnamyl alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=92.24 E-value=0.51 Score=50.62 Aligned_cols=45 Identities=24% Similarity=0.457 Sum_probs=35.6
Q ss_pred cCCEEEEEecChhHHHHHHHhhcCCCEEEEECCCCC--hhHHHHcCC
Q 007512 196 VGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAP--ADRARAIGV 240 (600)
Q Consensus 196 ~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~--~~~a~~~g~ 240 (600)
.|++|.|.|.|.+|...++.++.+|.+|++.+.... .+.+++.|+
T Consensus 183 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~~~~~~~~~~~~Ga 229 (360)
T PLN02586 183 PGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISSSSNKEDEAINRLGA 229 (360)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcchhhhHHHhCCC
Confidence 588999999999999999999999999988765542 233345665
|
|
| >TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=92.20 E-value=0.35 Score=51.51 Aligned_cols=30 Identities=33% Similarity=0.619 Sum_probs=24.7
Q ss_pred EEEEEecChhHHHHHHHhhcC----CCEEEEECC
Q 007512 199 TLAVLGFGKVGSEVARRAKGL----GMHVIAHDP 228 (600)
Q Consensus 199 tiGIIGlG~IG~~vA~~l~~~----g~~V~~~d~ 228 (600)
+|||+|+|+||+.+.+.+... +++|.+...
T Consensus 1 ~IaInGfGrIGR~vlr~l~e~~~~~~~~vvaInd 34 (325)
T TIGR01532 1 RVAINGFGRIGRNVLRALYESGERLGIEVVALNE 34 (325)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCCeEEEEEec
Confidence 589999999999999998754 378887654
|
Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species. |
| >PRK08223 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=92.12 E-value=0.24 Score=51.76 Aligned_cols=38 Identities=24% Similarity=0.266 Sum_probs=32.8
Q ss_pred eeccCCEEEEEecChhHHHHHHHhhcCCC-EEEEECCCC
Q 007512 193 VSLVGKTLAVLGFGKVGSEVARRAKGLGM-HVIAHDPYA 230 (600)
Q Consensus 193 ~~l~gktiGIIGlG~IG~~vA~~l~~~g~-~V~~~d~~~ 230 (600)
..|++++|.|||+|-+|..+|..|...|. ++..+|...
T Consensus 23 ~kL~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~ 61 (287)
T PRK08223 23 QRLRNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDV 61 (287)
T ss_pred HHHhcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 46899999999999999999999998885 777777653
|
|
| >TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p | Back alignment and domain information |
|---|
Probab=92.10 E-value=0.37 Score=55.32 Aligned_cols=127 Identities=18% Similarity=0.226 Sum_probs=81.5
Q ss_pred CceeecCC-CCChHHHHHHHHHHHHHHHhchHHHHHHHHcCcccccccc-ceeccCCEEEEEecChhHHHHHHHhhcCCC
Q 007512 144 GCLVVNAP-TANTVAAAEHGIALLAAMARNVAQADASVKAGKWQRNKYV-GVSLVGKTLAVLGFGKVGSEVARRAKGLGM 221 (600)
Q Consensus 144 GI~V~n~p-~~~~~~vAE~~l~lll~~~R~i~~~~~~~~~g~W~~~~~~-g~~l~gktiGIIGlG~IG~~vA~~l~~~g~ 221 (600)
|-++++-. -.+....||.++-|=|-++| |.--... ...|.+.+|.|||.|-+|..+|+.|.+.|.
T Consensus 296 ~pr~~dL~~~mdP~~la~~avdlnlkLmk-------------WRllP~l~~ekL~~~kVLIvGaGGLGs~VA~~La~~GV 362 (664)
T TIGR01381 296 QPISVDLSKEFDPKRLAERSVDLNLKLMK-------------WRLHPDLQLERYSQLKVLLLGAGTLGCNVARCLIGWGV 362 (664)
T ss_pred CceEechhhhcCHHHHHHHHHHHHHHHHh-------------hhcCChhhHHHHhcCeEEEECCcHHHHHHHHHHHHcCC
Confidence 33444432 35667788888877776665 5432212 256899999999999999999999999886
Q ss_pred -EEEEECCCC------------ChhH-----------H----HHc--CCc------c-------c-------------CH
Q 007512 222 -HVIAHDPYA------------PADR-----------A----RAI--GVD------L-------V-------------SF 245 (600)
Q Consensus 222 -~V~~~d~~~------------~~~~-----------a----~~~--g~~------~-------~-------------~l 245 (600)
++..+|... ..+. | ++. +++ . + .+
T Consensus 363 g~ItlVD~D~Ve~SNL~RQ~Lf~~~Dv~~~Gk~KA~aAa~~Lk~InP~v~i~~~~~~Ipm~Gh~i~~~~~~~~~~d~~~l 442 (664)
T TIGR01381 363 RHITFVDNGKVSYSNPVRQSLSNFEDCLLGGRGKAETAQKALKRIFPSIQATGHRLTVPMPGHPIDEKDVPELEKDIARL 442 (664)
T ss_pred CeEEEEcCCEECCCccccccccchhhhhhcCCcHHHHHHHHHHHHCCCcEEEEeeeeeccccccCCchhhhhccccHHHH
Confidence 677766321 0000 0 011 010 0 1 24
Q ss_pred HHHhccCCEEEEecCCCccccccccHhHhccCCCceEEEEcc
Q 007512 246 DEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVA 287 (600)
Q Consensus 246 ~ell~~aDvV~l~~Pl~~~t~~li~~~~l~~mk~gailvNva 287 (600)
.++++++|+|+.|+- +-++|.+++..-.. .+..+|+.+
T Consensus 443 ~~Li~~~DvV~d~tD-n~esR~L~n~~c~~---~~kplI~aA 480 (664)
T TIGR01381 443 EQLIKDHDVVFLLLD-SREARWLPTVLCSR---HKKIAISAA 480 (664)
T ss_pred HHHHhhCCEEEECCC-CHHHHHHHHHHHHH---hCCCEEEEE
Confidence 568899999999987 66788888765443 344566655
|
This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy. |
| >COG3830 ACT domain-containing protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.99 E-value=0.075 Score=45.47 Aligned_cols=30 Identities=23% Similarity=0.341 Sum_probs=26.5
Q ss_pred EEecCCCCChhhHHhhhhcCCccccceEee
Q 007512 531 CRQVDQPGMIGTVGSILGSENVNVSFMSVG 560 (600)
Q Consensus 531 v~~~D~pG~Ia~V~~iL~~~~INIa~m~v~ 560 (600)
+.-+|+||+++.|++.|+++|+||-+++-.
T Consensus 8 V~GkDr~GIva~is~vLAe~~vNIldisQt 37 (90)
T COG3830 8 VIGKDRVGIVAAVSRVLAEHGVNILDISQT 37 (90)
T ss_pred EEcCCCCchhHHHHHHHHHcCCcEEEHHHH
Confidence 446899999999999999999999988653
|
|
| >COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.98 E-value=0.29 Score=46.86 Aligned_cols=34 Identities=12% Similarity=0.343 Sum_probs=30.2
Q ss_pred EEecCCCCChhhHHhhhhcCCccccceEeeeecC
Q 007512 531 CRQVDQPGMIGTVGSILGSENVNVSFMSVGRVAP 564 (600)
Q Consensus 531 v~~~D~pG~Ia~V~~iL~~~~INIa~m~v~R~~~ 564 (600)
+...|+||++..++.+|.++||||++|..-|...
T Consensus 97 v~a~DrpgIv~~~T~lf~~~~inie~L~~~~~~a 130 (176)
T COG2716 97 VDANDRPGIVEEFTALFDGHGINIENLVSRTYPA 130 (176)
T ss_pred EEecCCccHHHHHHHHHHhcCCchhhceeeeeec
Confidence 5567999999999999999999999999977543
|
|
| >PTZ00325 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.87 E-value=0.34 Score=51.48 Aligned_cols=68 Identities=19% Similarity=0.224 Sum_probs=46.0
Q ss_pred eccCCEEEEEec-ChhHHHHHHHhhc--CCCEEEEECCCCChhHHHHc-----CCccc---C---HHHHhccCCEEEEec
Q 007512 194 SLVGKTLAVLGF-GKVGSEVARRAKG--LGMHVIAHDPYAPADRARAI-----GVDLV---S---FDEAIATADFISLHM 259 (600)
Q Consensus 194 ~l~gktiGIIGl-G~IG~~vA~~l~~--~g~~V~~~d~~~~~~~a~~~-----g~~~~---~---l~ell~~aDvV~l~~ 259 (600)
-++.++|+|||. |.||+.+|..+.. ...++..+|.......+.++ ..... + ..+.++.||+|++++
T Consensus 5 ~~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~~~~g~a~Dl~~~~~~~~v~~~td~~~~~~~l~gaDvVVita 84 (321)
T PTZ00325 5 ALKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVGAPGVAADLSHIDTPAKVTGYADGELWEKALRGADLVLICA 84 (321)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecCCCcccccchhhcCcCceEEEecCCCchHHHhCCCCEEEECC
Confidence 356679999999 9999999999884 44689999974322111110 11111 1 257899999999877
Q ss_pred CC
Q 007512 260 PL 261 (600)
Q Consensus 260 Pl 261 (600)
-.
T Consensus 85 G~ 86 (321)
T PTZ00325 85 GV 86 (321)
T ss_pred CC
Confidence 53
|
|
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=91.86 E-value=0.32 Score=53.63 Aligned_cols=67 Identities=16% Similarity=0.121 Sum_probs=47.2
Q ss_pred ccCCEEEEEecChhHHHHHHHhhcCCCEEEEECCCCCh-hHHHHc--CCcc-----cC---H-HHHhccCCEEEEecCC
Q 007512 195 LVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPA-DRARAI--GVDL-----VS---F-DEAIATADFISLHMPL 261 (600)
Q Consensus 195 l~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~~-~~a~~~--g~~~-----~~---l-~ell~~aDvV~l~~Pl 261 (600)
+..+++.|+|+|.+|+.+++.|...|.+|+++|.+... +...+. ++.. .+ | +..+.++|.|+++++.
T Consensus 229 ~~~~~iiIiG~G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~~~~~~i~gd~~~~~~L~~~~~~~a~~vi~~~~~ 307 (453)
T PRK09496 229 KPVKRVMIVGGGNIGYYLAKLLEKEGYSVKLIERDPERAEELAEELPNTLVLHGDGTDQELLEEEGIDEADAFIALTND 307 (453)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHCCCCeEEECCCCCHHHHHhcCCccCCEEEECCCC
Confidence 45689999999999999999999999999999877632 223322 3321 12 2 1235678888877774
|
|
| >PRK06392 homoserine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.86 E-value=0.71 Score=49.21 Aligned_cols=105 Identities=18% Similarity=0.379 Sum_probs=60.7
Q ss_pred EEEEEecChhHHHHHHHhhc--------CCCEEEE-ECCCC--------ChhHH---HHcC----C--cccCHHHHh-cc
Q 007512 199 TLAVLGFGKVGSEVARRAKG--------LGMHVIA-HDPYA--------PADRA---RAIG----V--DLVSFDEAI-AT 251 (600)
Q Consensus 199 tiGIIGlG~IG~~vA~~l~~--------~g~~V~~-~d~~~--------~~~~a---~~~g----~--~~~~l~ell-~~ 251 (600)
+|+|+|+|.||+.+++.+.. ++.+|.+ +|+.. +.+.. .+.| . ...++++++ .+
T Consensus 2 rVaIiGfG~VG~~va~~L~~~~~~~~~g~~l~VVaVsds~g~l~~~~Gldl~~l~~~~~~g~l~~~~~~~~~~~~ll~~~ 81 (326)
T PRK06392 2 RISIIGLGNVGLNVLRIIKSRNDDRRNNNGISVVSVSDSKLSYYNERGLDIGKIISYKEKGRLEEIDYEKIKFDEIFEIK 81 (326)
T ss_pred EEEEECCCHHHHHHHHHHHhCHHhHhcCCCeEEEEEEECCCcccCCcCCChHHHHHHHhcCccccCCCCcCCHHHHhcCC
Confidence 79999999999999999865 5677665 34332 11111 1111 1 112455553 46
Q ss_pred CCEEEEecCCCccccccccHhHhccCCCceEEEEccCCccc-cHHHHHHhHhcC
Q 007512 252 ADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVI-DEEALVRALDSG 304 (600)
Q Consensus 252 aDvV~l~~Pl~~~t~~li~~~~l~~mk~gailvNvarg~iv-de~aL~~aL~~g 304 (600)
+|+|+=|+|... +-.-.-......|+.|.-+|-...|.+. ....|.++.+++
T Consensus 82 ~DVvVE~t~~~~-~g~~~~~~~~~aL~~G~hVVTaNKgalA~~~~eL~~lA~~~ 134 (326)
T PRK06392 82 PDVIVDVTPASK-DGIREKNLYINAFEHGIDVVTANKSGLANHWHDIMDSASKN 134 (326)
T ss_pred CCEEEECCCCCC-cCchHHHHHHHHHHCCCEEEcCCHHHHHhhHHHHHHHHHHc
Confidence 899999988432 1100112223446777777777777765 355565555443
|
|
| >COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=91.85 E-value=0.54 Score=50.46 Aligned_cols=84 Identities=27% Similarity=0.355 Sum_probs=55.6
Q ss_pred EEEEEecChhHHHHHHHhhcCCC-EEEEECCCC-ChhHHHH-cCCccc-CH-H--------HHh--ccCCEEEEecCCCc
Q 007512 199 TLAVLGFGKVGSEVARRAKGLGM-HVIAHDPYA-PADRARA-IGVDLV-SF-D--------EAI--ATADFISLHMPLTP 263 (600)
Q Consensus 199 tiGIIGlG~IG~~vA~~l~~~g~-~V~~~d~~~-~~~~a~~-~g~~~~-~l-~--------ell--~~aDvV~l~~Pl~~ 263 (600)
++.|+|.|.||.-.+..++.+|. +|++.|++. ..+.|++ .|.... +. + ++- ..+|+++-|+. .+
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~G-~~ 249 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAVG-SP 249 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECCC-CH
Confidence 99999999999999999999985 788889877 5566766 444322 11 1 222 23788888776 22
Q ss_pred cccccccHhHhccCCCceEEEEcc
Q 007512 264 ATSKVLNDETFGKMKKGVRIINVA 287 (600)
Q Consensus 264 ~t~~li~~~~l~~mk~gailvNva 287 (600)
.+ -...+..++++..++.+|
T Consensus 250 ~~----~~~ai~~~r~gG~v~~vG 269 (350)
T COG1063 250 PA----LDQALEALRPGGTVVVVG 269 (350)
T ss_pred HH----HHHHHHHhcCCCEEEEEe
Confidence 11 133455567777766666
|
|
| >PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional | Back alignment and domain information |
|---|
Probab=91.83 E-value=0.31 Score=51.58 Aligned_cols=76 Identities=18% Similarity=0.281 Sum_probs=51.5
Q ss_pred CEEEEEe-cChhHHHHHHHhhcC-CCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEecCCCccccccccHhHhc
Q 007512 198 KTLAVLG-FGKVGSEVARRAKGL-GMHVIAHDPYAPADRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVLNDETFG 275 (600)
Q Consensus 198 ktiGIIG-lG~IG~~vA~~l~~~-g~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Pl~~~t~~li~~~~l~ 275 (600)
.+|+||| .|..|+++.+.|... .+++.......... ..+.++.++++|++|+|+|... . .+...
T Consensus 3 ~~VaIvGAtGy~G~eLlrlL~~hp~~~l~~~~s~~~~~--------~~~~~~~~~~~DvvFlalp~~~-s-----~~~~~ 68 (313)
T PRK11863 3 PKVFIDGEAGTTGLQIRERLAGRSDIELLSIPEAKRKD--------AAARRELLNAADVAILCLPDDA-A-----REAVA 68 (313)
T ss_pred cEEEEECCCCHHHHHHHHHHhcCCCeEEEEEecCCCCc--------ccCchhhhcCCCEEEECCCHHH-H-----HHHHH
Confidence 4799999 899999999999977 45666553322111 1234566788999999999432 2 22222
Q ss_pred c-CCCceEEEEcc
Q 007512 276 K-MKKGVRIINVA 287 (600)
Q Consensus 276 ~-mk~gailvNva 287 (600)
. .+.|+.+||.+
T Consensus 69 ~~~~~g~~VIDlS 81 (313)
T PRK11863 69 LIDNPATRVIDAS 81 (313)
T ss_pred HHHhCCCEEEECC
Confidence 2 25788999986
|
|
| >PRK05597 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
Probab=91.80 E-value=0.25 Score=53.19 Aligned_cols=38 Identities=32% Similarity=0.432 Sum_probs=33.1
Q ss_pred eeccCCEEEEEecChhHHHHHHHhhcCCC-EEEEECCCC
Q 007512 193 VSLVGKTLAVLGFGKVGSEVARRAKGLGM-HVIAHDPYA 230 (600)
Q Consensus 193 ~~l~gktiGIIGlG~IG~~vA~~l~~~g~-~V~~~d~~~ 230 (600)
..|++++|.|||+|-+|..+|+.|...|. ++..+|...
T Consensus 24 ~~L~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ 62 (355)
T PRK05597 24 QSLFDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDT 62 (355)
T ss_pred HHHhCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 46899999999999999999999998886 777887653
|
|
| >CHL00194 ycf39 Ycf39; Provisional | Back alignment and domain information |
|---|
Probab=91.76 E-value=0.38 Score=50.50 Aligned_cols=63 Identities=19% Similarity=0.223 Sum_probs=45.7
Q ss_pred CEEEEEe-cChhHHHHHHHhhcCCCEEEEECCCCCh-hHHHHcCCcc--------cCHHHHhccCCEEEEecC
Q 007512 198 KTLAVLG-FGKVGSEVARRAKGLGMHVIAHDPYAPA-DRARAIGVDL--------VSFDEAIATADFISLHMP 260 (600)
Q Consensus 198 ktiGIIG-lG~IG~~vA~~l~~~g~~V~~~d~~~~~-~~a~~~g~~~--------~~l~ell~~aDvV~l~~P 260 (600)
++|.|.| .|.||+.+++.|...|++|.+.++.... ......+++. .++.++++.+|+|+.+.+
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~~~~~l~~~~v~~v~~Dl~d~~~l~~al~g~d~Vi~~~~ 73 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDEGYQVRCLVRNLRKASFLKEWGAELVYGDLSLPETLPPSFKGVTAIIDAST 73 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCeEEEEEcChHHhhhHhhcCCEEEECCCCCHHHHHHHHCCCCEEEECCC
Confidence 4788998 6999999999999889999998876422 1112335532 135677899999876543
|
|
| >TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=91.70 E-value=0.47 Score=50.43 Aligned_cols=45 Identities=29% Similarity=0.457 Sum_probs=36.3
Q ss_pred cCCEEEEEecChhHHHHHHHhhcCCCEEEEECCCC-ChhHHHHcCC
Q 007512 196 VGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYA-PADRARAIGV 240 (600)
Q Consensus 196 ~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~-~~~~a~~~g~ 240 (600)
.|.++.|+|.|.+|...++.++..|.+|++.+... ..+.+++.|+
T Consensus 166 ~g~~VlV~G~G~vG~~a~~~a~~~G~~vi~~~~~~~~~~~~~~~Ga 211 (349)
T TIGR03201 166 KGDLVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDPEKLEMMKGFGA 211 (349)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHhCC
Confidence 37899999999999999999999999999988765 3344455554
|
Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA. |
| >COG0078 ArgF Ornithine carbamoyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.59 E-value=3.4 Score=43.31 Aligned_cols=93 Identities=25% Similarity=0.355 Sum_probs=66.1
Q ss_pred ccCCEEEEEecC-hhHHHHHHHhhcCCCEEEEECCCC--C-h---hH----HHHcC--Cccc-CHHHHhccCCEEEEecC
Q 007512 195 LVGKTLAVLGFG-KVGSEVARRAKGLGMHVIAHDPYA--P-A---DR----ARAIG--VDLV-SFDEAIATADFISLHMP 260 (600)
Q Consensus 195 l~gktiGIIGlG-~IG~~vA~~l~~~g~~V~~~d~~~--~-~---~~----a~~~g--~~~~-~l~ell~~aDvV~l~~P 260 (600)
+.|+|+..+|=| +++.++...+..+||+|...-|.. + . +. +.+.| +..+ ++++.++.||+|..-+.
T Consensus 151 l~g~k~a~vGDgNNv~nSl~~~~a~~G~dv~ia~Pk~~~p~~~~~~~a~~~a~~~g~~i~~t~d~~eAv~gADvvyTDvW 230 (310)
T COG0078 151 LKGLKLAYVGDGNNVANSLLLAAAKLGMDVRIATPKGYEPDPEVVEKAKENAKESGGKITLTEDPEEAVKGADVVYTDVW 230 (310)
T ss_pred ccCcEEEEEcCcchHHHHHHHHHHHhCCeEEEECCCcCCcCHHHHHHHHHHHHhcCCeEEEecCHHHHhCCCCEEEecCc
Confidence 999999999877 688888888889999998876643 1 1 12 23334 3333 89999999999998765
Q ss_pred CC--cccc-----------ccccHhHhccCCCceEEEEcc
Q 007512 261 LT--PATS-----------KVLNDETFGKMKKGVRIINVA 287 (600)
Q Consensus 261 l~--~~t~-----------~li~~~~l~~mk~gailvNva 287 (600)
.. ++.. +-+|.+.++.-++++++.-|=
T Consensus 231 vSMGee~e~~~~~~~~~~~yQVn~~lm~~a~~~~ifmHCL 270 (310)
T COG0078 231 VSMGEEAEAEERRIAFLPPYQVNEELMALAGPDAIFMHCL 270 (310)
T ss_pred ccCcchhhhHHHHHhhCCCceeCHHHHhhcCCCeEEEeCC
Confidence 32 2221 445677777777778887774
|
|
| >PLN02178 cinnamyl-alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=91.37 E-value=0.65 Score=50.22 Aligned_cols=45 Identities=24% Similarity=0.431 Sum_probs=36.1
Q ss_pred cCCEEEEEecChhHHHHHHHhhcCCCEEEEECCCCC--hhHHHHcCC
Q 007512 196 VGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAP--ADRARAIGV 240 (600)
Q Consensus 196 ~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~--~~~a~~~g~ 240 (600)
.|+++.|.|.|.+|...++.++.+|.+|++.++... .+.++++|+
T Consensus 178 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~Vi~~~~~~~~~~~~a~~lGa 224 (375)
T PLN02178 178 SGKRLGVNGLGGLGHIAVKIGKAFGLRVTVISRSSEKEREAIDRLGA 224 (375)
T ss_pred CCCEEEEEcccHHHHHHHHHHHHcCCeEEEEeCChHHhHHHHHhCCC
Confidence 488999999999999999999999999999876542 234445554
|
|
| >PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA | Back alignment and domain information |
|---|
Probab=91.30 E-value=0.35 Score=48.20 Aligned_cols=63 Identities=25% Similarity=0.325 Sum_probs=48.4
Q ss_pred EEEEec-ChhHHHHHHHhhcCCCEEEEECCCCCh---hHHHHcCCccc--------CHHHHhccCCEEEEecCCC
Q 007512 200 LAVLGF-GKVGSEVARRAKGLGMHVIAHDPYAPA---DRARAIGVDLV--------SFDEAIATADFISLHMPLT 262 (600)
Q Consensus 200 iGIIGl-G~IG~~vA~~l~~~g~~V~~~d~~~~~---~~a~~~g~~~~--------~l~ell~~aDvV~l~~Pl~ 262 (600)
|.|+|. |.+|+++++.|...+++|.+.-+..+. ......|++.+ +|.+.++.+|.|++++|..
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~~~~~~~~l~~~g~~vv~~d~~~~~~l~~al~g~d~v~~~~~~~ 75 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAGFSVRALVRDPSSDRAQQLQALGAEVVEADYDDPESLVAALKGVDAVFSVTPPS 75 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTGCEEEEESSSHHHHHHHHHHTTTEEEES-TT-HHHHHHHHTTCSEEEEESSCS
T ss_pred CEEECCccHHHHHHHHHHHhCCCCcEEEEeccchhhhhhhhcccceEeecccCCHHHHHHHHcCCceEEeecCcc
Confidence 678885 999999999999888999887665532 23355676432 4667899999999999954
|
NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B .... |
| >cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein) | Back alignment and domain information |
|---|
Probab=91.26 E-value=0.73 Score=38.07 Aligned_cols=58 Identities=9% Similarity=0.108 Sum_probs=42.5
Q ss_pred EEEEecCCCCChhhHHhhhhcCCccccceEeeeecCCCcEEEEEEe---C-CCC-cHHHHHHHhc
Q 007512 529 ILCRQVDQPGMIGTVGSILGSENVNVSFMSVGRVAPRKHAVMAIGV---D-EQP-RKETLKKIGD 588 (600)
Q Consensus 529 Liv~~~D~pG~Ia~V~~iL~~~~INIa~m~v~R~~~g~~al~~i~~---D-~~~-~~~~l~~l~~ 588 (600)
+=+...|+||.+..|++.|.++|++|..-.+. ..|+.+.=++-+ + .++ +++.+++|++
T Consensus 4 iev~a~DRpGLL~~i~~~l~~~gl~I~~AkIs--T~Gerv~DvFyV~d~~g~kl~d~~~~~~l~~ 66 (72)
T cd04895 4 VKVDSARKPGILLEAVQVLTDLDLCITKAYIS--SDGGWFMDVFHVTDQLGNKLTDDSLIAYIEK 66 (72)
T ss_pred EEEEECCcCCHHHHHHHHHHHCCcEEEEEEEe--ecCCeEEEEEEEECCCCCCCCCHHHHHHHHH
Confidence 34668999999999999999999999998886 556665333333 3 233 4677777764
|
This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains. |
| >cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein) | Back alignment and domain information |
|---|
Probab=91.24 E-value=0.51 Score=39.28 Aligned_cols=58 Identities=16% Similarity=0.117 Sum_probs=42.0
Q ss_pred EEEecCCCCChhhHHhhhhcCCccccceEeeeecCCCcEEEEE--EeCC-CC-cHHHHHHHh
Q 007512 530 LCRQVDQPGMIGTVGSILGSENVNVSFMSVGRVAPRKHAVMAI--GVDE-QP-RKETLKKIG 587 (600)
Q Consensus 530 iv~~~D~pG~Ia~V~~iL~~~~INIa~m~v~R~~~g~~al~~i--~~D~-~~-~~~~l~~l~ 587 (600)
=+...|+||.+..|+..|.+.|++|.+..+.-...|+.+.=.+ ..+. ++ +++.+++|+
T Consensus 4 ev~a~DRpGLL~~i~~~l~~~~l~i~~AkI~~~T~Gerv~D~Fyv~~~g~kl~d~~~~~~L~ 65 (75)
T cd04896 4 QIRCVDQKGLLYDILRTSKDCNIQISYGRFSSKVKGYREVDLFIVQSDGKKIMDPKKQAALC 65 (75)
T ss_pred EEEeCCcccHHHHHHHHHHHCCeEEEEEEEecCcccCEEEEEEEEeCCCCccCCHHHHHHHH
Confidence 3668999999999999999999999999997446666654333 3332 33 445555554
|
This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains. |
| >cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase) | Back alignment and domain information |
|---|
Probab=91.17 E-value=0.6 Score=50.14 Aligned_cols=45 Identities=33% Similarity=0.463 Sum_probs=37.1
Q ss_pred cCCEEEEEecChhHHHHHHHhhcCCC-EEEEECCCC-ChhHHHHcCC
Q 007512 196 VGKTLAVLGFGKVGSEVARRAKGLGM-HVIAHDPYA-PADRARAIGV 240 (600)
Q Consensus 196 ~gktiGIIGlG~IG~~vA~~l~~~g~-~V~~~d~~~-~~~~a~~~g~ 240 (600)
.|.+|.|.|.|.+|...++.++..|. +|++.|... ..+.++++|+
T Consensus 191 ~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~~Ga 237 (371)
T cd08281 191 PGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARELGA 237 (371)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHcCC
Confidence 47899999999999999999999998 699988765 3455566665
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd |
| >cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like | Back alignment and domain information |
|---|
Probab=91.14 E-value=0.57 Score=49.30 Aligned_cols=44 Identities=36% Similarity=0.517 Sum_probs=35.9
Q ss_pred CCEEEEEecChhHHHHHHHhhcCCCE-EEEECCCC-ChhHHHHcCC
Q 007512 197 GKTLAVLGFGKVGSEVARRAKGLGMH-VIAHDPYA-PADRARAIGV 240 (600)
Q Consensus 197 gktiGIIGlG~IG~~vA~~l~~~g~~-V~~~d~~~-~~~~a~~~g~ 240 (600)
|.++.|+|.|.+|...++.++.+|.+ |++.++.. ..+.+++.|+
T Consensus 164 g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~~ga 209 (339)
T cd08239 164 RDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKALGA 209 (339)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCC
Confidence 89999999999999999999999998 99988765 3344455554
|
MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at |
| >PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional | Back alignment and domain information |
|---|
Probab=91.11 E-value=0.24 Score=48.65 Aligned_cols=44 Identities=16% Similarity=0.257 Sum_probs=33.5
Q ss_pred EEEecCCCCChhhHHhhhhcCCccccceEeeeecCCCcEEEEEE
Q 007512 530 LCRQVDQPGMIGTVGSILGSENVNVSFMSVGRVAPRKHAVMAIG 573 (600)
Q Consensus 530 iv~~~D~pG~Ia~V~~iL~~~~INIa~m~v~R~~~g~~al~~i~ 573 (600)
-+.-+|+||+++.|++.|+++|+||.+.+..+-...-..+|.++
T Consensus 12 TviG~DrpGIVa~vs~~l~~~g~NI~ds~~t~lgg~Fa~i~lvs 55 (190)
T PRK11589 12 TALGADRPGIVNTITRHVSSCGCNIEDSRLAMLGEEFTFIMLLS 55 (190)
T ss_pred EEEcCCCChHHHHHHHHHHHcCCCeeehhhHhhCCceEEEEEEe
Confidence 34469999999999999999999999998875432222455554
|
|
| >KOG4230 consensus C1-tetrahydrofolate synthase [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.04 E-value=2.3 Score=47.81 Aligned_cols=138 Identities=22% Similarity=0.210 Sum_probs=91.0
Q ss_pred cceeccCCEEEEEecChh-HHHHHHHhhcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEecCCCccccccc
Q 007512 191 VGVSLVGKTLAVLGFGKV-GSEVARRAKGLGMHVIAHDPYAPADRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVL 269 (600)
Q Consensus 191 ~g~~l~gktiGIIGlG~I-G~~vA~~l~~~g~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Pl~~~t~~li 269 (600)
.+..+.||...++|--.| |..++..|+.....|..+-... -++.+.+.+||+|+.++--. +++
T Consensus 156 a~v~v~Gk~aVVlGRS~IVG~Pia~LL~~~NaTVTiCHSKT------------~~lae~v~~ADIvIvAiG~P----efV 219 (935)
T KOG4230|consen 156 AGVFVAGKNAVVLGRSKIVGSPIAALLLWANATVTICHSKT------------RNLAEKVSRADIVIVAIGQP----EFV 219 (935)
T ss_pred cCCccccceeEEEecccccCChHHHHHHhcCceEEEecCCC------------ccHHHHhccCCEEEEEcCCc----cee
Confidence 357889999999998765 8899999998888888775432 24788899999999998622 344
Q ss_pred cHhHhccCCCceEEEEccCCccccHHHHHHhHhcCCceEEEEeccCCCCCCCCCccccCCcEEEcCCCCCCcHHHHHHHH
Q 007512 270 NDETFGKMKKGVRIINVARGGVIDEEALVRALDSGRVAQAALDVFTEEPPPADSKLVQHERVTVTPHLGASTMEAQEGVA 349 (600)
Q Consensus 270 ~~~~l~~mk~gailvNvarg~ivde~aL~~aL~~g~i~ga~lDv~~~EP~~~~~~L~~~~nvilTPH~~~~t~ea~~~~~ 349 (600)
-.+ ++|||+++||||---+-|.. -++|+- ..=||-..+ .. +-.. .+||--||.-.=+..-+-
T Consensus 220 Kgd---WiKpGavVIDvGINyvpD~~-----Kksg~k--lvGDVdfe~--Ak-----evas-~ITPVPGGVGPMTVAMLm 281 (935)
T KOG4230|consen 220 KGD---WIKPGAVVIDVGINYVPDPS-----KKSGFK--LVGDVDFES--AK-----EVAS-FITPVPGGVGPMTVAMLM 281 (935)
T ss_pred ecc---cccCCcEEEEccccccCCCC-----Ccccce--EeeecchHh--hh-----hhhh-ccccCCCCcchHHHHHHH
Confidence 443 46999999999854443321 234432 344554444 11 1122 489999988765555444
Q ss_pred HHHHHHHHHHHcC
Q 007512 350 IEIAEAVVGALKG 362 (600)
Q Consensus 350 ~~~~~~l~~~l~g 362 (600)
+.+.++-+++...
T Consensus 282 qNtveaAKR~r~e 294 (935)
T KOG4230|consen 282 QNTVEAAKRQREE 294 (935)
T ss_pred HHHHHHHHHHHHh
Confidence 5555555555543
|
|
| >PLN02272 glyceraldehyde-3-phosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=91.01 E-value=0.32 Score=53.26 Aligned_cols=36 Identities=33% Similarity=0.635 Sum_probs=30.2
Q ss_pred CEEEEEecChhHHHHHHHhhc-CCCEEEE-ECCCCChh
Q 007512 198 KTLAVLGFGKVGSEVARRAKG-LGMHVIA-HDPYAPAD 233 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~-~g~~V~~-~d~~~~~~ 233 (600)
.+|||.|+|+||+.++|.+.. ++++|++ +||..+.+
T Consensus 86 ~kvgInGFGRIGR~v~R~~~~~~~i~vvaINdp~~~~~ 123 (421)
T PLN02272 86 TKIGINGFGRIGRLVLRIATSRDDIEVVAVNDPFIDAK 123 (421)
T ss_pred eEEEEECcCHHHHHHHHHHhhcCCcEEEEecCCCCCHH
Confidence 499999999999999999874 7999988 67765443
|
|
| >COG0540 PyrB Aspartate carbamoyltransferase, catalytic chain [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=90.94 E-value=1.4 Score=46.16 Aligned_cols=63 Identities=24% Similarity=0.334 Sum_probs=48.8
Q ss_pred ccCCEEEEEe---cChhHHHHHHHhhcCCCEEEEECCCC--Ch----hHHHHcCC--cccC-HHHHhccCCEEEE
Q 007512 195 LVGKTLAVLG---FGKVGSEVARRAKGLGMHVIAHDPYA--PA----DRARAIGV--DLVS-FDEAIATADFISL 257 (600)
Q Consensus 195 l~gktiGIIG---lG~IG~~vA~~l~~~g~~V~~~d~~~--~~----~~a~~~g~--~~~~-l~ell~~aDvV~l 257 (600)
+.|.+|+|+| .|+.-++.++.|+.||.+|..+.|.. ++ +.....|. ...+ .++.++++|++.+
T Consensus 156 ~~gl~iaivGDlkhsRva~S~~~~L~~~ga~v~lvsP~~L~~p~~i~~~l~~~~~~~~~~~~~e~~i~~~DVl~~ 230 (316)
T COG0540 156 LDGLKIAIVGDLKHSRVAHSNIQALKRFGAEVYLVSPETLLPPEYILEELEEKGGVVVEHDSDEEVIEEADVLYM 230 (316)
T ss_pred cCCcEEEEEccccchHHHHHHHHHHHHcCCEEEEECchHhCCchhHHHHHhhcCceEEEecchhhhhccCCEEEe
Confidence 8899999999 89999999999999999999999865 21 22333332 2334 4559999999955
|
|
| >cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD) | Back alignment and domain information |
|---|
Probab=90.87 E-value=0.9 Score=47.87 Aligned_cols=45 Identities=31% Similarity=0.473 Sum_probs=36.2
Q ss_pred cCCEEEEEecChhHHHHHHHhhcCCCEEEEECCCC-ChhHHHHcCC
Q 007512 196 VGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYA-PADRARAIGV 240 (600)
Q Consensus 196 ~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~-~~~~a~~~g~ 240 (600)
.|.++.|.|.|.+|..+++.++.+|.+|++.++.. ..+.+.+.|+
T Consensus 169 ~g~~vlV~g~g~vG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~g~ 214 (337)
T cd05283 169 PGKRVGVVGIGGLGHLAVKFAKALGAEVTAFSRSPSKKEDALKLGA 214 (337)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHcCC
Confidence 46799999999999999999999999999988765 3344444554
|
Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic |
| >cd01487 E1_ThiF_like E1_ThiF_like | Back alignment and domain information |
|---|
Probab=90.78 E-value=0.59 Score=45.11 Aligned_cols=32 Identities=22% Similarity=0.276 Sum_probs=27.9
Q ss_pred EEEEEecChhHHHHHHHhhcCCC-EEEEECCCC
Q 007512 199 TLAVLGFGKVGSEVARRAKGLGM-HVIAHDPYA 230 (600)
Q Consensus 199 tiGIIGlG~IG~~vA~~l~~~g~-~V~~~d~~~ 230 (600)
+|+|||+|.+|..+|+.|...|. ++..+|...
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~ 33 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDV 33 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 58999999999999999998887 588888654
|
Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. |
| >KOG2663 consensus Acetolactate synthase, small subunit [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=90.78 E-value=0.23 Score=50.03 Aligned_cols=71 Identities=15% Similarity=0.329 Sum_probs=50.7
Q ss_pred CccEEEEEecCCCCChhhHHhhhhcCCccccceEeeeecCCCcEEEEEEeC--CCCcHHHHHHHhcCCCcceE
Q 007512 525 EGSIILCRQVDQPGMIGTVGSILGSENVNVSFMSVGRVAPRKHAVMAIGVD--EQPRKETLKKIGDVPAIEEF 595 (600)
Q Consensus 525 ~~~~Liv~~~D~pG~Ia~V~~iL~~~~INIa~m~v~R~~~g~~al~~i~~D--~~~~~~~l~~l~~~~~v~~v 595 (600)
..|++-|...|+||+|.+|+.+|+..|.||..+.+.-.+...-.-|.|-+- +.+=+.+.++|.++=.|+.|
T Consensus 76 krHvinclVqnEpGvlsRisGvlAaRGfNIdSLvVc~tevk~LsrmTIVl~Gtd~VveQa~rQiedlVnV~aV 148 (309)
T KOG2663|consen 76 KRHVINCLVQNEPGVLSRISGVLAARGFNIDSLVVCLTEVKALSRMTIVLQGTDGVVEQARRQIEDLVNVYAV 148 (309)
T ss_pred cceeEEEEecCCchHHHHHHHHHHhccCCchheeeechhhhhhhhceEEEeccHHHHHHHHHHHHHhhhhhee
Confidence 368888899999999999999999999999999998655443342333332 33445666666666555443
|
|
| >TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=90.72 E-value=0.68 Score=49.05 Aligned_cols=89 Identities=19% Similarity=0.171 Sum_probs=54.8
Q ss_pred EEEEEec-ChhHHHHHHHhhcCC--CEEEEECCCCChhHHHH--cC-----Ccc-c---CHHHHhccCCEEEEecCCCc-
Q 007512 199 TLAVLGF-GKVGSEVARRAKGLG--MHVIAHDPYAPADRARA--IG-----VDL-V---SFDEAIATADFISLHMPLTP- 263 (600)
Q Consensus 199 tiGIIGl-G~IG~~vA~~l~~~g--~~V~~~d~~~~~~~a~~--~g-----~~~-~---~l~ell~~aDvV~l~~Pl~~- 263 (600)
+|+|||. |.||.++|-.|...+ -++..||.......+.+ .+ +.. . ++.+.++.||+|+++.-...
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~a~g~a~DL~~~~~~~~i~~~~~~~~~~~~~~daDivvitaG~~~~ 80 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAGAAGVAADLSHIPTAASVKGFSGEEGLENALKGADVVVIPAGVPRK 80 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCCCcEEEchhhcCCcCceEEEecCCCchHHHcCCCCEEEEeCCCCCC
Confidence 5899999 999999999987444 48999997652111111 11 111 1 23578999999999876422
Q ss_pred --cccc-cc--cHh-------HhccCCCceEEEEcc
Q 007512 264 --ATSK-VL--NDE-------TFGKMKKGVRIINVA 287 (600)
Q Consensus 264 --~t~~-li--~~~-------~l~~mk~gailvNva 287 (600)
.++. ++ |.+ .+..-.|++++++++
T Consensus 81 ~g~~R~dll~~N~~I~~~i~~~i~~~~p~~iiivvs 116 (312)
T TIGR01772 81 PGMTRDDLFNVNAGIVKDLVAAVAESCPKAMILVIT 116 (312)
T ss_pred CCccHHHHHHHhHHHHHHHHHHHHHhCCCeEEEEec
Confidence 1111 11 111 233346888898884
|
Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases. |
| >PRK12550 shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=90.71 E-value=0.6 Score=48.49 Aligned_cols=64 Identities=17% Similarity=0.161 Sum_probs=44.7
Q ss_pred CCEEEEEecChhHHHHHHHhhcCCC-EEEEECCCCCh--hHHHHcCCcccCHHHH-hccCCEEEEecCCC
Q 007512 197 GKTLAVLGFGKVGSEVARRAKGLGM-HVIAHDPYAPA--DRARAIGVDLVSFDEA-IATADFISLHMPLT 262 (600)
Q Consensus 197 gktiGIIGlG~IG~~vA~~l~~~g~-~V~~~d~~~~~--~~a~~~g~~~~~l~el-l~~aDvV~l~~Pl~ 262 (600)
++++.|+|.|-.+++++..|+..|+ +|..+++.... ..+...+.... +++ ...+|+|+.|+|+.
T Consensus 122 ~~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~~a~~la~~~~~~~~--~~~~~~~~dlvINaTp~G 189 (272)
T PRK12550 122 DLVVALRGSGGMAKAVAAALRDAGFTDGTIVARNEKTGKALAELYGYEWR--PDLGGIEADILVNVTPIG 189 (272)
T ss_pred CCeEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhCCcch--hhcccccCCEEEECCccc
Confidence 4689999999999999999998887 69999987632 12223332221 111 24589999998853
|
|
| >cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases | Back alignment and domain information |
|---|
Probab=90.61 E-value=0.44 Score=50.73 Aligned_cols=63 Identities=14% Similarity=0.070 Sum_probs=43.5
Q ss_pred EEEEEec-ChhHHHHHHHhhcCC-------CEEEEECCCCChh--HHHHcC-----------Cc-ccCHHHHhccCCEEE
Q 007512 199 TLAVLGF-GKVGSEVARRAKGLG-------MHVIAHDPYAPAD--RARAIG-----------VD-LVSFDEAIATADFIS 256 (600)
Q Consensus 199 tiGIIGl-G~IG~~vA~~l~~~g-------~~V~~~d~~~~~~--~a~~~g-----------~~-~~~l~ell~~aDvV~ 256 (600)
+|+|+|. |.+|+.++..|...+ .++..+|.....+ .+.... +. ..++.+.++.||+|+
T Consensus 4 kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d~~~~~~~~~~~~~~~~~~l~~aDiVI 83 (325)
T cd01336 4 RVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVMELQDCAFPLLKSVVATTDPEEAFKDVDVAI 83 (325)
T ss_pred EEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccceeeehhhccccccCCceecCCHHHHhCCCCEEE
Confidence 6999999 999999999987633 4899999754221 111110 11 235668899999998
Q ss_pred EecCC
Q 007512 257 LHMPL 261 (600)
Q Consensus 257 l~~Pl 261 (600)
.+.-.
T Consensus 84 ~tAG~ 88 (325)
T cd01336 84 LVGAM 88 (325)
T ss_pred EeCCc
Confidence 87654
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK07411 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=90.52 E-value=0.29 Score=53.40 Aligned_cols=38 Identities=18% Similarity=0.207 Sum_probs=33.1
Q ss_pred eeccCCEEEEEecChhHHHHHHHhhcCCC-EEEEECCCC
Q 007512 193 VSLVGKTLAVLGFGKVGSEVARRAKGLGM-HVIAHDPYA 230 (600)
Q Consensus 193 ~~l~gktiGIIGlG~IG~~vA~~l~~~g~-~V~~~d~~~ 230 (600)
..|...+|.|||+|-+|..+|+.|...|. ++..+|+..
T Consensus 34 ~~L~~~~VlivG~GGlG~~va~~La~~Gvg~l~lvD~D~ 72 (390)
T PRK07411 34 KRLKAASVLCIGTGGLGSPLLLYLAAAGIGRIGIVDFDV 72 (390)
T ss_pred HHHhcCcEEEECCCHHHHHHHHHHHHcCCCEEEEECCCE
Confidence 46899999999999999999999998886 778888653
|
|
| >cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases | Back alignment and domain information |
|---|
Probab=90.45 E-value=0.68 Score=49.00 Aligned_cols=91 Identities=19% Similarity=0.197 Sum_probs=56.1
Q ss_pred CEEEEEec-ChhHHHHHHHhhcCC--CEEEEECCCCChhHHH--HcC---Ccc------cCHHHHhccCCEEEEecCCC-
Q 007512 198 KTLAVLGF-GKVGSEVARRAKGLG--MHVIAHDPYAPADRAR--AIG---VDL------VSFDEAIATADFISLHMPLT- 262 (600)
Q Consensus 198 ktiGIIGl-G~IG~~vA~~l~~~g--~~V~~~d~~~~~~~a~--~~g---~~~------~~l~ell~~aDvV~l~~Pl~- 262 (600)
++|+|||. |.+|.++|-.+...+ -++..+|.......+. +.+ ... .++.+.+++||+|+++.-..
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~~a~g~alDL~~~~~~~~i~~~~~~~~~y~~~~daDivvitaG~~~ 80 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIVNTPGVAADLSHINTPAKVTGYLGPEELKKALKGADVVVIPAGVPR 80 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecCccceeehHhHhCCCcceEEEecCCCchHHhcCCCCEEEEeCCCCC
Confidence 48999999 999999999988655 4889999762111111 111 111 12357899999999987542
Q ss_pred -c-cccc-cc--cHh-------HhccCCCceEEEEccC
Q 007512 263 -P-ATSK-VL--NDE-------TFGKMKKGVRIINVAR 288 (600)
Q Consensus 263 -~-~t~~-li--~~~-------~l~~mk~gailvNvar 288 (600)
+ ++|- ++ |.+ .+..-.|++++++++-
T Consensus 81 k~g~tR~dll~~N~~i~~~i~~~i~~~~p~a~vivvtN 118 (310)
T cd01337 81 KPGMTRDDLFNINAGIVRDLATAVAKACPKALILIISN 118 (310)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccC
Confidence 2 1221 11 111 2333467889999853
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases | Back alignment and domain information |
|---|
Probab=90.45 E-value=0.36 Score=51.35 Aligned_cols=64 Identities=19% Similarity=0.128 Sum_probs=43.5
Q ss_pred CEEEEEec-ChhHHHHHHHhhcCCC-------EEEEECCCCChh--HHHHc-----------CCcc-cCHHHHhccCCEE
Q 007512 198 KTLAVLGF-GKVGSEVARRAKGLGM-------HVIAHDPYAPAD--RARAI-----------GVDL-VSFDEAIATADFI 255 (600)
Q Consensus 198 ktiGIIGl-G~IG~~vA~~l~~~g~-------~V~~~d~~~~~~--~a~~~-----------g~~~-~~l~ell~~aDvV 255 (600)
++|+|||. |.||.++|-.+...|. ++..+|.....+ .+..+ .+.. .+..+.+++||+|
T Consensus 3 ~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDiv 82 (322)
T cd01338 3 VRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVITDDPNVAFKDADWA 82 (322)
T ss_pred eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEEecCcHHHhCCCCEE
Confidence 48999999 9999999998875443 789999743221 11111 0111 2345789999999
Q ss_pred EEecCC
Q 007512 256 SLHMPL 261 (600)
Q Consensus 256 ~l~~Pl 261 (600)
+++.-.
T Consensus 83 vitaG~ 88 (322)
T cd01338 83 LLVGAK 88 (322)
T ss_pred EEeCCC
Confidence 998753
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit | Back alignment and domain information |
|---|
Probab=90.41 E-value=0.86 Score=47.66 Aligned_cols=90 Identities=22% Similarity=0.204 Sum_probs=61.7
Q ss_pred CCEEEEEecChhHHHHHHHhhcCCCEEEEECCCCChhHHHHcCCcccCH-HHHhccCCEEEEecCCCcccc---------
Q 007512 197 GKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPADRARAIGVDLVSF-DEAIATADFISLHMPLTPATS--------- 266 (600)
Q Consensus 197 gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~~~~a~~~g~~~~~l-~ell~~aDvV~l~~Pl~~~t~--------- 266 (600)
|++++|||-=.=-..+++.|...|++|..|.-....... .|+...++ ++.+.++|+|++-+|.+.+..
T Consensus 1 ~~~~~v~ggd~r~~~~~~~l~~~g~~v~~~g~~~~~~~~--~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~i~~~~~~~ 78 (287)
T TIGR02853 1 GIHIAVIGGDARQLELIRKLEELDAKISLIGFDQLEDGF--TGAVKCELLELDLTTLDVVILPVPGTSHDGKVATVFSNE 78 (287)
T ss_pred CcEEEEEcccHHHHHHHHHHHHCCCEEEEEecccccccc--ccceeecchhhhhccCCEEEECCccccCCceEecccccC
Confidence 689999999999999999999999988776432110101 15544444 455999999999999665421
Q ss_pred -ccccHhHhccCCCceEEEEccCC
Q 007512 267 -KVLNDETFGKMKKGVRIINVARG 289 (600)
Q Consensus 267 -~li~~~~l~~mk~gailvNvarg 289 (600)
-.++++.++.|+++++ +-+|.+
T Consensus 79 ~~~l~~~~l~~~~~~~~-~~~G~~ 101 (287)
T TIGR02853 79 KVVLTPELLESTKGHCT-IYVGIS 101 (287)
T ss_pred CccccHHHHHhcCCCCE-EEEecC
Confidence 1246778888987654 444433
|
This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA. |
| >PLN00106 malate dehydrogenase | Back alignment and domain information |
|---|
Probab=90.33 E-value=0.57 Score=49.89 Aligned_cols=65 Identities=22% Similarity=0.210 Sum_probs=44.9
Q ss_pred CCEEEEEec-ChhHHHHHHHhhcCC--CEEEEECCCCChhHHHHc-------CCc----ccCHHHHhccCCEEEEecCC
Q 007512 197 GKTLAVLGF-GKVGSEVARRAKGLG--MHVIAHDPYAPADRARAI-------GVD----LVSFDEAIATADFISLHMPL 261 (600)
Q Consensus 197 gktiGIIGl-G~IG~~vA~~l~~~g--~~V~~~d~~~~~~~a~~~-------g~~----~~~l~ell~~aDvV~l~~Pl 261 (600)
.++|+|||. |.||..+|..|...+ -++..+|.......+.++ .+. ..++.+.+++||+|+++.-.
T Consensus 18 ~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~~~g~a~Dl~~~~~~~~i~~~~~~~d~~~~l~~aDiVVitAG~ 96 (323)
T PLN00106 18 GFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIANTPGVAADVSHINTPAQVRGFLGDDQLGDALKGADLVIIPAGV 96 (323)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCCCCeeEchhhhCCcCceEEEEeCCCCHHHHcCCCCEEEEeCCC
Confidence 469999999 999999999998443 489999976521111110 111 12346889999999987653
|
|
| >cd05290 LDH_3 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=90.23 E-value=0.54 Score=49.71 Aligned_cols=63 Identities=27% Similarity=0.337 Sum_probs=42.9
Q ss_pred EEEEEecChhHHHHHHHhhcCC--CEEEEECCCCChhHHHHcC------------Ccc-cCHHHHhccCCEEEEecCC
Q 007512 199 TLAVLGFGKVGSEVARRAKGLG--MHVIAHDPYAPADRARAIG------------VDL-VSFDEAIATADFISLHMPL 261 (600)
Q Consensus 199 tiGIIGlG~IG~~vA~~l~~~g--~~V~~~d~~~~~~~a~~~g------------~~~-~~l~ell~~aDvV~l~~Pl 261 (600)
+|+|||.|.||..+|-.+...+ -++..+|.......+..+. +.. .+--+.+++||+|+++.-.
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~~~~y~~~~~aDivvitaG~ 78 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRAGDYDDCADADIIVITAGP 78 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEEECCHHHhCCCCEEEECCCC
Confidence 5899999999999999886444 3899999865332221111 111 1224778999999997653
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional | Back alignment and domain information |
|---|
Probab=90.20 E-value=0.63 Score=55.62 Aligned_cols=106 Identities=11% Similarity=0.213 Sum_probs=65.7
Q ss_pred CEEEEEecChhHHHH-HHHhhcCCCEEEEECCCCCh--hHHHHcCCccc--CHHHHhccCCEEEEecCCCcccc------
Q 007512 198 KTLAVLGFGKVGSEV-ARRAKGLGMHVIAHDPYAPA--DRARAIGVDLV--SFDEAIATADFISLHMPLTPATS------ 266 (600)
Q Consensus 198 ktiGIIGlG~IG~~v-A~~l~~~g~~V~~~d~~~~~--~~a~~~g~~~~--~l~ell~~aDvV~l~~Pl~~~t~------ 266 (600)
+++.|+|+|.+|.+. |+.|+..|++|.++|..... ....+.|+... .-.+.+..+|+|+..--..+.+.
T Consensus 5 ~~i~viG~G~sG~salA~~L~~~G~~V~~sD~~~~~~~~~L~~~gi~~~~g~~~~~~~~~d~vV~SpgI~~~~p~~~~a~ 84 (809)
T PRK14573 5 LFYHFIGIGGIGMSALAHILLDRGYSVSGSDLSEGKTVEKLKAKGARFFLGHQEEHVPEDAVVVYSSSISKDNVEYLSAK 84 (809)
T ss_pred ceEEEEEecHHhHHHHHHHHHHCCCeEEEECCCCChHHHHHHHCCCEEeCCCCHHHcCCCCEEEECCCcCCCCHHHHHHH
Confidence 369999999999998 99999999999999976532 22344576542 23356778999987543332211
Q ss_pred ----ccccHhHh-cc-CCC-ceEEEEccCCccccHHHHHHhHhc
Q 007512 267 ----KVLNDETF-GK-MKK-GVRIINVARGGVIDEEALVRALDS 303 (600)
Q Consensus 267 ----~li~~~~l-~~-mk~-gailvNvarg~ivde~aL~~aL~~ 303 (600)
.++++-++ .. ++. ..+-|-=+.|+.-...-+...|+.
T Consensus 85 ~~gi~v~~~~el~~~~~~~~~~IaITGTnGKTTTt~li~~iL~~ 128 (809)
T PRK14573 85 SRGNRLVHRAELLAELMQEQISILVSGSHGKTTVSSLITAIFQE 128 (809)
T ss_pred HCCCcEEeHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHHh
Confidence 22333333 22 332 233333346887555555666665
|
|
| >cd00704 MDH Malate dehydrogenase | Back alignment and domain information |
|---|
Probab=90.20 E-value=1.5 Score=46.76 Aligned_cols=96 Identities=20% Similarity=0.208 Sum_probs=57.7
Q ss_pred EEEEEec-ChhHHHHHHHhhcCCC-------EEEEECCCC--ChhHHHHc-----------CCcc-cCHHHHhccCCEEE
Q 007512 199 TLAVLGF-GKVGSEVARRAKGLGM-------HVIAHDPYA--PADRARAI-----------GVDL-VSFDEAIATADFIS 256 (600)
Q Consensus 199 tiGIIGl-G~IG~~vA~~l~~~g~-------~V~~~d~~~--~~~~a~~~-----------g~~~-~~l~ell~~aDvV~ 256 (600)
+|+|+|. |.||..+|..+...|. ++..+|... +...+..+ +... .+..+.+++||+|+
T Consensus 2 KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~~~~~~~~i~~~~~~~~~~aDiVV 81 (323)
T cd00704 2 HVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPLLKGVVITTDPEEAFKDVDVAI 81 (323)
T ss_pred EEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCccceeeeehhhhcccccCCcEEecChHHHhCCCCEEE
Confidence 7999999 9999999999875432 588899765 22111111 0111 24668899999999
Q ss_pred EecCCCc---ccccc-c--cH-------hHhccC-CCceEEEEccCCccccHHH
Q 007512 257 LHMPLTP---ATSKV-L--ND-------ETFGKM-KKGVRIINVARGGVIDEEA 296 (600)
Q Consensus 257 l~~Pl~~---~t~~l-i--~~-------~~l~~m-k~gailvNvarg~ivde~a 296 (600)
+..-... +|+.- + |. ..+.+. +|+++++.++ ..+|.-.
T Consensus 82 itAG~~~~~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvs--NPvD~~t 133 (323)
T cd00704 82 LVGAFPRKPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVG--NPANTNA 133 (323)
T ss_pred EeCCCCCCcCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEeC--CcHHHHH
Confidence 8765321 12211 0 11 123334 5788888874 5556444
|
Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) | Back alignment and domain information |
|---|
Probab=90.18 E-value=0.69 Score=39.11 Aligned_cols=58 Identities=14% Similarity=0.272 Sum_probs=40.4
Q ss_pred EEEEecCCCCChhhHHhhhhcCCccccceEeeeec-CCCcEEEEEEeCC-C-CcHHHHHHHhc
Q 007512 529 ILCRQVDQPGMIGTVGSILGSENVNVSFMSVGRVA-PRKHAVMAIGVDE-Q-PRKETLKKIGD 588 (600)
Q Consensus 529 Liv~~~D~pG~Ia~V~~iL~~~~INIa~m~v~R~~-~g~~al~~i~~D~-~-~~~~~l~~l~~ 588 (600)
+.+.-+|+||.+.++.++|+. .||..+.-.|.. .....++.+++++ + --+++++.|++
T Consensus 4 l~v~ipD~PG~L~~ll~~l~~--anI~~~~y~~~~~~~~~v~i~ie~~~~~~~~~~i~~~L~~ 64 (85)
T cd04906 4 LAVTIPERPGSFKKFCELIGP--RNITEFNYRYADEKDAHIFVGVSVANGAEELAELLEDLKS 64 (85)
T ss_pred EEEecCCCCcHHHHHHHHhCC--CceeEEEEEccCCCeeEEEEEEEeCCcHHHHHHHHHHHHH
Confidence 556789999999999999994 455566665543 3334666778776 3 34477777766
|
This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains. |
| >PRK15076 alpha-galactosidase; Provisional | Back alignment and domain information |
|---|
Probab=90.17 E-value=0.96 Score=50.09 Aligned_cols=112 Identities=12% Similarity=0.100 Sum_probs=66.9
Q ss_pred CEEEEEecChhHHHHHH--Hh---hcC-CCEEEEECCCCChhH-H--------HHcCC----c-ccCHHHHhccCCEEEE
Q 007512 198 KTLAVLGFGKVGSEVAR--RA---KGL-GMHVIAHDPYAPADR-A--------RAIGV----D-LVSFDEAIATADFISL 257 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~--~l---~~~-g~~V~~~d~~~~~~~-a--------~~~g~----~-~~~l~ell~~aDvV~l 257 (600)
.+|+|||.|.+|...+- .+ .++ +.+|..||....... + ...+. . ..++.+.++.||||+.
T Consensus 2 ~KIaIIGaGsvg~~~~~~~~i~~~~~l~~~evvLvDid~er~~~~~~l~~~~~~~~~~~~~i~~ttD~~eal~dADfVv~ 81 (431)
T PRK15076 2 PKITFIGAGSTVFTKNLLGDILSVPALRDAEIALMDIDPERLEESEIVARKLAESLGASAKITATTDRREALQGADYVIN 81 (431)
T ss_pred cEEEEECCCHHHhHHHHHHHHhhCccCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEECCHHHHhCCCCEEeE
Confidence 48999999999955543 22 344 569999998752211 1 11222 1 2367899999999999
Q ss_pred ecCCCccc-c-----------ccc-----------------cH-------hHhccCCCceEEEEccCCccccHHHHHHhH
Q 007512 258 HMPLTPAT-S-----------KVL-----------------ND-------ETFGKMKKGVRIINVARGGVIDEEALVRAL 301 (600)
Q Consensus 258 ~~Pl~~~t-~-----------~li-----------------~~-------~~l~~mk~gailvNvarg~ivde~aL~~aL 301 (600)
++-..... . +++ +- +.+....|++++||.+-.-=+-..++.+ +
T Consensus 82 ti~vg~~~~~~~~De~Iplk~G~~~~r~et~G~GG~~~~~r~i~~i~~i~~~i~~~~p~a~iin~tNP~divt~~~~~-~ 160 (431)
T PRK15076 82 AIQVGGYEPCTVTDFEIPKKYGLRQTIGDTLGIGGIMRALRTIPVLLDICEDMEEVCPDALLLNYVNPMAMNTWAMNR-Y 160 (431)
T ss_pred eeeeCCcchhhhhhhhhHHHcCCeeecccCcCccchhhhhhhHHHHHHHHHHHHHHCCCeEEEEcCChHHHHHHHHhc-C
Confidence 98764111 1 010 00 1233356899999997644333445543 4
Q ss_pred hcCCceEEE
Q 007512 302 DSGRVAQAA 310 (600)
Q Consensus 302 ~~g~i~ga~ 310 (600)
...++.|.+
T Consensus 161 ~~~rviG~c 169 (431)
T PRK15076 161 PGIKTVGLC 169 (431)
T ss_pred CCCCEEEEC
Confidence 455776654
|
|
| >cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=90.15 E-value=1.1 Score=47.61 Aligned_cols=35 Identities=17% Similarity=0.151 Sum_probs=29.7
Q ss_pred cCCEEEEEecChhHHHHHHHhhc-C-CCEEEEECCCC
Q 007512 196 VGKTLAVLGFGKVGSEVARRAKG-L-GMHVIAHDPYA 230 (600)
Q Consensus 196 ~gktiGIIGlG~IG~~vA~~l~~-~-g~~V~~~d~~~ 230 (600)
.|.++.|+|.|.||...++.++. + +.+|++.|+..
T Consensus 163 ~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~ 199 (341)
T cd08237 163 DRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQ 199 (341)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcH
Confidence 48899999999999998888875 5 46899998765
|
NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase ( |
| >PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=90.11 E-value=0.53 Score=50.57 Aligned_cols=83 Identities=18% Similarity=0.203 Sum_probs=49.4
Q ss_pred CEEEEEe-cChhHHHHHHHhhcC-CCEEEEE-CCCCChh--HHH---------------HcCCcccCHHHHhccCCEEEE
Q 007512 198 KTLAVLG-FGKVGSEVARRAKGL-GMHVIAH-DPYAPAD--RAR---------------AIGVDLVSFDEAIATADFISL 257 (600)
Q Consensus 198 ktiGIIG-lG~IG~~vA~~l~~~-g~~V~~~-d~~~~~~--~a~---------------~~g~~~~~l~ell~~aDvV~l 257 (600)
.+|+|+| .|.+|+.+.+.|..+ .+++.++ ....... ... ...+...+.++ +.++|+|+.
T Consensus 4 ~~V~I~GatG~iG~~l~~~L~~~p~~el~~~~~s~~~~G~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~DvVf~ 82 (349)
T PRK08664 4 LKVGILGATGMVGQRFVQLLANHPWFEVTALAASERSAGKTYGEAVRWQLDGPIPEEVADMEVVSTDPEA-VDDVDIVFS 82 (349)
T ss_pred cEEEEECCCCHHHHHHHHHHHcCCCceEEEEEcChhhcCCcccccccccccccccccccceEEEeCCHHH-hcCCCEEEE
Confidence 5899998 999999999999877 5688877 2211110 000 00111123443 478999999
Q ss_pred ecCCCccccccccHhHhccC-CCceEEEEcc
Q 007512 258 HMPLTPATSKVLNDETFGKM-KKGVRIINVA 287 (600)
Q Consensus 258 ~~Pl~~~t~~li~~~~l~~m-k~gailvNva 287 (600)
|+|... . .+....+ +.|+.+||.+
T Consensus 83 a~p~~~-s-----~~~~~~~~~~G~~vIDls 107 (349)
T PRK08664 83 ALPSDV-A-----GEVEEEFAKAGKPVFSNA 107 (349)
T ss_pred eCChhH-H-----HHHHHHHHHCCCEEEECC
Confidence 998542 2 2222222 4567677665
|
|
| >PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=90.08 E-value=0.82 Score=50.65 Aligned_cols=105 Identities=17% Similarity=0.248 Sum_probs=63.2
Q ss_pred EEEEEecChhHHHHHHHhhcCCCEEEEECCCCChh------HHHHcCCccc---CHH-----HHhccCCEEEEecCCCcc
Q 007512 199 TLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPAD------RARAIGVDLV---SFD-----EAIATADFISLHMPLTPA 264 (600)
Q Consensus 199 tiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~~~------~a~~~g~~~~---~l~-----ell~~aDvV~l~~Pl~~~ 264 (600)
+|.|||+|..|.+.|+.|...|.+|.++|...... ...+.|+... ..+ +.+.+.|.|+......+.
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~g~~~~~~~~~~~~~~~d~vv~s~gi~~~ 81 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDSPELLERQQELEQEGITVKLGKPLELESFQPWLDQPDLVVVSPGIPWD 81 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCchhhHHHHHHHHHcCCEEEECCccchhhhhHHhhcCCEEEECCCCCCC
Confidence 68999999999999999999999999999765221 1234566431 122 467889998874433332
Q ss_pred cc----------ccccHhHh--ccCCCc-eEEEEccCCccccHHHHHHhHhc
Q 007512 265 TS----------KVLNDETF--GKMKKG-VRIINVARGGVIDEEALVRALDS 303 (600)
Q Consensus 265 t~----------~li~~~~l--~~mk~g-ailvNvarg~ivde~aL~~aL~~ 303 (600)
.. .++.+..+ ..+++. .+-|--+.|+.-...-+...|+.
T Consensus 82 ~~~~~~a~~~~i~v~~~~~~~~~~~~~~~~I~VTGT~GKTTTt~ml~~iL~~ 133 (459)
T PRK02705 82 HPTLVELRERGIEVIGEIELAWRALKHIPWVGITGTNGKTTVTALLAHILQA 133 (459)
T ss_pred CHHHHHHHHcCCcEEEhHHHHHHhhcCCCEEEEeCCCchHHHHHHHHHHHHH
Confidence 11 12232222 223332 33333346877555555555654
|
|
| >PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=90.06 E-value=0.72 Score=54.04 Aligned_cols=70 Identities=9% Similarity=0.154 Sum_probs=53.8
Q ss_pred EEEEEecCCCCChhhHHhhhhcCCccccceEeeeecCCCcEEEE--EEeCCCCc-HHHHHHHhcCCCcceEEEe
Q 007512 528 IILCRQVDQPGMIGTVGSILGSENVNVSFMSVGRVAPRKHAVMA--IGVDEQPR-KETLKKIGDVPAIEEFVFL 598 (600)
Q Consensus 528 ~Liv~~~D~pG~Ia~V~~iL~~~~INIa~m~v~R~~~g~~al~~--i~~D~~~~-~~~l~~l~~~~~v~~v~~i 598 (600)
.|.+...|++|+++.|++.+++.++||.++++. ..+++.+.+. |++.+.-. ..++.+|+.+++|.+|+-+
T Consensus 628 ~i~I~~~dr~GlL~dI~~~i~~~~~nI~~v~~~-~~~~~~~~~~~~ieV~~~~~L~~i~~~Lr~i~~V~~V~R~ 700 (702)
T PRK11092 628 EIKVEMFNHQGALANLTAAINTTGSNIQSLNTE-EKDGRVYSAFIRLTARDRVHLANIMRKIRVMPDVIKVTRN 700 (702)
T ss_pred EEEEEEeCCCCHHHHHHHHHHHCCCCeEEEEEE-EcCCCEEEEEEEEEECCHHHHHHHHHHHhCCCCcceEEEc
Confidence 345778999999999999999999999999974 3444555554 44444422 2789999999999998754
|
|
| >PRK15057 UDP-glucose 6-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=89.95 E-value=0.81 Score=49.94 Aligned_cols=63 Identities=17% Similarity=0.172 Sum_probs=50.6
Q ss_pred ccCCEEEEEecC----------hhHHHHHHHhhcCCCEEEEECCCCChhHHHHcCCccc-CHHHHhccCCEEEEec
Q 007512 195 LVGKTLAVLGFG----------KVGSEVARRAKGLGMHVIAHDPYAPADRARAIGVDLV-SFDEAIATADFISLHM 259 (600)
Q Consensus 195 l~gktiGIIGlG----------~IG~~vA~~l~~~g~~V~~~d~~~~~~~a~~~g~~~~-~l~ell~~aDvV~l~~ 259 (600)
..|++|+|+|+. .-...+++.|...|.+|.+|||...... ..++.+. ++.+.++.||.|++..
T Consensus 294 ~~~~~i~vlGlafK~~t~D~R~Sp~~~i~~~L~~~G~~v~~~DP~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 367 (388)
T PRK15057 294 RKPQVVGIYRLIMKSGSDNFRASSIQGIMKRIKAKGVEVIIYEPVMKEDS--FFNSRLERDLATFKQQADVIISNR 367 (388)
T ss_pred hcCCEEEEEcceeCCCCCccccChHHHHHHHHHhCCCEEEEECCCCCchh--hcCCeeeCCHHHHHHhCCEEEEcC
Confidence 368999999994 3466899999999999999999864332 3466554 7999999999999854
|
|
| >PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed | Back alignment and domain information |
|---|
Probab=89.93 E-value=0.89 Score=52.99 Aligned_cols=36 Identities=25% Similarity=0.275 Sum_probs=32.9
Q ss_pred ccCCEEEEEecChhHHHHHHHhhcCCCEEEEECCCC
Q 007512 195 LVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYA 230 (600)
Q Consensus 195 l~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~ 230 (600)
-.|++|.|||.|..|.+.|..|+..|++|++||+..
T Consensus 325 ~~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~ 360 (654)
T PRK12769 325 KSDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHP 360 (654)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCC
Confidence 468999999999999999999999999999998653
|
|
| >PLN02740 Alcohol dehydrogenase-like | Back alignment and domain information |
|---|
Probab=89.93 E-value=1 Score=48.64 Aligned_cols=45 Identities=29% Similarity=0.592 Sum_probs=36.9
Q ss_pred cCCEEEEEecChhHHHHHHHhhcCCC-EEEEECCCC-ChhHHHHcCC
Q 007512 196 VGKTLAVLGFGKVGSEVARRAKGLGM-HVIAHDPYA-PADRARAIGV 240 (600)
Q Consensus 196 ~gktiGIIGlG~IG~~vA~~l~~~g~-~V~~~d~~~-~~~~a~~~g~ 240 (600)
.|.+|.|+|.|.||...++.++.+|. +|++.|+.. ..+.++++|+
T Consensus 198 ~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga 244 (381)
T PLN02740 198 AGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKEMGI 244 (381)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHcCC
Confidence 58899999999999999999999998 699988765 3445555554
|
|
| >PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=89.88 E-value=0.85 Score=50.44 Aligned_cols=109 Identities=20% Similarity=0.206 Sum_probs=62.9
Q ss_pred ccC-CEEEEEecChhHHHHHHHhhcC--CCEEEEECCCCChh--HHHHcCCccc-C--HHHHhccCCEEEEecCCCcccc
Q 007512 195 LVG-KTLAVLGFGKVGSEVARRAKGL--GMHVIAHDPYAPAD--RARAIGVDLV-S--FDEAIATADFISLHMPLTPATS 266 (600)
Q Consensus 195 l~g-ktiGIIGlG~IG~~vA~~l~~~--g~~V~~~d~~~~~~--~a~~~g~~~~-~--l~ell~~aDvV~l~~Pl~~~t~ 266 (600)
+.+ +++.|||+|.+|.+.++.|... |++|.++|...... ...+.|+... . -.+.+.++|+|+..--..+...
T Consensus 4 ~~~~~~v~viG~G~sG~s~~~~l~~~~~~~~v~~~D~~~~~~~~~~l~~g~~~~~g~~~~~~~~~~d~vV~SpgI~~~~p 83 (438)
T PRK04663 4 WQGIKNVVVVGLGITGLSVVKHLRKYQPQLTVKVIDTRETPPGQEQLPEDVELHSGGWNLEWLLEADLVVTNPGIALATP 83 (438)
T ss_pred ccCCceEEEEeccHHHHHHHHHHHhcCCCCeEEEEeCCCCchhHHHhhcCCEEEeCCCChHHhccCCEEEECCCCCCCCH
Confidence 345 7899999999999999999866 58999999754221 1122366542 1 2344688998876543222111
Q ss_pred ----------ccccHhHh-c-cCCCceEEEEccCCccccHHHHHHhHhc
Q 007512 267 ----------KVLNDETF-G-KMKKGVRIINVARGGVIDEEALVRALDS 303 (600)
Q Consensus 267 ----------~li~~~~l-~-~mk~gailvNvarg~ivde~aL~~aL~~ 303 (600)
.++.+-++ . .++...+-|-=+.|+.-...-+...|+.
T Consensus 84 ~~~~a~~~gi~i~~~~el~~~~~~~~~I~VTGTnGKTTTt~ll~~iL~~ 132 (438)
T PRK04663 84 EIQQVLAAGIPVVGDIELFAWAVDKPVIAITGSNGKSTVTDLTGVMAKA 132 (438)
T ss_pred HHHHHHHCCCcEEEHHHHHHhhcCCCEEEEeCCCCHHHHHHHHHHHHHH
Confidence 12333222 2 2343333333346877555555555654
|
|
| >COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.86 E-value=1.5 Score=44.90 Aligned_cols=83 Identities=23% Similarity=0.314 Sum_probs=66.9
Q ss_pred HHHHHHHhhcCCCEEEEECCCCC---h---hHHHHcCCccc-CHHHHhccCCEEEEecCCCccccccccHhHhccCCCce
Q 007512 209 GSEVARRAKGLGMHVIAHDPYAP---A---DRARAIGVDLV-SFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGV 281 (600)
Q Consensus 209 G~~vA~~l~~~g~~V~~~d~~~~---~---~~a~~~g~~~~-~l~ell~~aDvV~l~~Pl~~~t~~li~~~~l~~mk~ga 281 (600)
|..+|-.+...|..|+..||+.+ . ++-.+.|++.+ +-.+..+.+.+.++-+|....|-++. ++.+..++.|+
T Consensus 33 Ga~mAiefAeAGHDVVLaePn~d~~dd~~w~~vedAGV~vv~dD~eaa~~~Ei~VLFTPFGk~T~~Ia-rei~~hvpEgA 111 (340)
T COG4007 33 GARMAIEFAEAGHDVVLAEPNRDIMDDEHWKRVEDAGVEVVSDDAEAAEHGEIHVLFTPFGKATFGIA-REILEHVPEGA 111 (340)
T ss_pred chHHHHHHHHcCCcEEeecCCccccCHHHHHHHHhcCcEEecCchhhhhcceEEEEecccchhhHHHH-HHHHhhCcCCc
Confidence 67888888888999999999873 2 23456788876 44578899999999999988777765 67888999999
Q ss_pred EEEEccCCccc
Q 007512 282 RIINVARGGVI 292 (600)
Q Consensus 282 ilvNvarg~iv 292 (600)
+|-|+..-+.+
T Consensus 112 VicnTCT~sp~ 122 (340)
T COG4007 112 VICNTCTVSPV 122 (340)
T ss_pred EecccccCchh
Confidence 99999875543
|
|
| >PRK06382 threonine dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=89.75 E-value=0.48 Score=51.95 Aligned_cols=69 Identities=16% Similarity=0.251 Sum_probs=50.3
Q ss_pred EeecCccEEEEEecCCCCChhhHHhhhhcCCccccceEeeee---cCCCcEEEEEEeCCC--CcH-HHHHHHhcC
Q 007512 521 DVSLEGSIILCRQVDQPGMIGTVGSILGSENVNVSFMSVGRV---APRKHAVMAIGVDEQ--PRK-ETLKKIGDV 589 (600)
Q Consensus 521 ~~~g~~~~Liv~~~D~pG~Ia~V~~iL~~~~INIa~m~v~R~---~~g~~al~~i~~D~~--~~~-~~l~~l~~~ 589 (600)
...+....+.+..+|+||.+..++.+++++++||..+...|. ...+.+.+.+.++.. ... +++++|++.
T Consensus 325 ~~~~~~~rl~v~v~D~pG~L~~l~~ii~~~~~nI~~v~~~~~~~~~~~~~~~v~i~vet~~~~~~~~v~~~L~~~ 399 (406)
T PRK06382 325 ENLGQLVRIECNIPDRPGNLYRIANAIASNGGNIYHAEVDNLRKETPPGFQSVTFTVNVRGQDHLDRILNALREM 399 (406)
T ss_pred HhcCCEEEEEEEcCCCCCHHHHHHHHHhcCCCcEEEEEEeeccccCCCCcEEEEEEEEeCCHHHHHHHHHHHHHC
Confidence 344555667788999999999999999999999988877642 223455666666653 333 778888764
|
|
| >TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=89.73 E-value=1 Score=48.11 Aligned_cols=45 Identities=33% Similarity=0.440 Sum_probs=36.2
Q ss_pred cCCEEEEEecChhHHHHHHHhhcCCCE-EEEECCCC-ChhHHHHcCC
Q 007512 196 VGKTLAVLGFGKVGSEVARRAKGLGMH-VIAHDPYA-PADRARAIGV 240 (600)
Q Consensus 196 ~gktiGIIGlG~IG~~vA~~l~~~g~~-V~~~d~~~-~~~~a~~~g~ 240 (600)
.|++|.|.|.|.+|...++.++..|.+ |++.|+.. ..+.+++.|.
T Consensus 176 ~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~~Ga 222 (358)
T TIGR03451 176 RGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAREFGA 222 (358)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCC
Confidence 478999999999999999999999984 98888765 3445555554
|
Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione. |
| >TIGR01082 murC UDP-N-acetylmuramate--alanine ligase | Back alignment and domain information |
|---|
Probab=89.71 E-value=0.7 Score=51.21 Aligned_cols=104 Identities=17% Similarity=0.276 Sum_probs=62.1
Q ss_pred EEEEecChhHHH-HHHHhhcCCCEEEEECCCCCh--hHHHHcCCccc--CHHHHhccCCEEEEecCCCccc---------
Q 007512 200 LAVLGFGKVGSE-VARRAKGLGMHVIAHDPYAPA--DRARAIGVDLV--SFDEAIATADFISLHMPLTPAT--------- 265 (600)
Q Consensus 200 iGIIGlG~IG~~-vA~~l~~~g~~V~~~d~~~~~--~~a~~~g~~~~--~l~ell~~aDvV~l~~Pl~~~t--------- 265 (600)
+-|||+|.+|.+ +|+.|+..|.+|.++|..... +..++.|+... .-.+.+.++|+|+..--..+..
T Consensus 2 ~~~iGiggsGm~~la~~L~~~G~~v~~~D~~~~~~~~~l~~~gi~~~~g~~~~~~~~~d~vV~spgi~~~~p~~~~a~~~ 81 (448)
T TIGR01082 2 IHFVGIGGIGMSGIAEILLNRGYQVSGSDIAENATTKRLEALGIPIYIGHSAENLDDADVVVVSAAIKDDNPEIVEAKER 81 (448)
T ss_pred EEEEEECHHHHHHHHHHHHHCCCeEEEECCCcchHHHHHHHCcCEEeCCCCHHHCCCCCEEEECCCCCCCCHHHHHHHHc
Confidence 679999999998 999999999999999976532 22334566542 1234567899988753222211
Q ss_pred -cccccHhHh-cc-CCCc-eEEEEccCCccccHHHHHHhHhc
Q 007512 266 -SKVLNDETF-GK-MKKG-VRIINVARGGVIDEEALVRALDS 303 (600)
Q Consensus 266 -~~li~~~~l-~~-mk~g-ailvNvarg~ivde~aL~~aL~~ 303 (600)
..++++..| .. +++. .+-|-=+.|+.-...-+...|+.
T Consensus 82 ~i~v~~~~el~~~~~~~~~~IaITGTnGKTTTt~ll~~iL~~ 123 (448)
T TIGR01082 82 GIPVIRRAEMLAELMRFRHSIAVAGTHGKTTTTAMIAVILKE 123 (448)
T ss_pred CCceEeHHHHHHHHHhcCcEEEEECCCChHHHHHHHHHHHHH
Confidence 122333322 22 3322 33333346887555555566654
|
UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081. |
| >PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP | Back alignment and domain information |
|---|
Probab=89.60 E-value=0.33 Score=44.54 Aligned_cols=35 Identities=31% Similarity=0.440 Sum_probs=29.8
Q ss_pred cCCEEEEEecChhHHHHHHHhhcCCC-EEEEECCCC
Q 007512 196 VGKTLAVLGFGKVGSEVARRAKGLGM-HVIAHDPYA 230 (600)
Q Consensus 196 ~gktiGIIGlG~IG~~vA~~l~~~g~-~V~~~d~~~ 230 (600)
+.++|.|+|+|.+|..+|+.|...|+ ++..+|+..
T Consensus 1 r~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~ 36 (135)
T PF00899_consen 1 RNKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDI 36 (135)
T ss_dssp HT-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSB
T ss_pred CCCEEEEECcCHHHHHHHHHHHHhCCCceeecCCcc
Confidence 36799999999999999999998887 788888754
|
Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A .... |
| >PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed | Back alignment and domain information |
|---|
Probab=89.45 E-value=0.91 Score=52.82 Aligned_cols=36 Identities=25% Similarity=0.267 Sum_probs=32.9
Q ss_pred ccCCEEEEEecChhHHHHHHHhhcCCCEEEEECCCC
Q 007512 195 LVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYA 230 (600)
Q Consensus 195 l~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~ 230 (600)
..|++|.|||-|..|.+.|..|+..|++|..|+...
T Consensus 308 ~~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~ 343 (639)
T PRK12809 308 PRSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHP 343 (639)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCC
Confidence 469999999999999999999999999999998654
|
|
| >TIGR01759 MalateDH-SF1 malate dehydrogenase | Back alignment and domain information |
|---|
Probab=89.21 E-value=0.54 Score=50.06 Aligned_cols=63 Identities=21% Similarity=0.126 Sum_probs=43.2
Q ss_pred EEEEEec-ChhHHHHHHHhhcCCC-------EEEEECCCCCh--hHHHHcC-----------Ccc-cCHHHHhccCCEEE
Q 007512 199 TLAVLGF-GKVGSEVARRAKGLGM-------HVIAHDPYAPA--DRARAIG-----------VDL-VSFDEAIATADFIS 256 (600)
Q Consensus 199 tiGIIGl-G~IG~~vA~~l~~~g~-------~V~~~d~~~~~--~~a~~~g-----------~~~-~~l~ell~~aDvV~ 256 (600)
+|+|||. |.+|.++|-.+...|. ++..+|..... ..+..+. +.. .+..+.+++||+|+
T Consensus 5 KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDvVV 84 (323)
T TIGR01759 5 RVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGVVATTDPEEAFKDVDAAL 84 (323)
T ss_pred EEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHHhhccccccCCcEEecChHHHhCCCCEEE
Confidence 7999998 9999999999885553 79999975321 1111110 111 24457899999999
Q ss_pred EecCC
Q 007512 257 LHMPL 261 (600)
Q Consensus 257 l~~Pl 261 (600)
++.-.
T Consensus 85 itAG~ 89 (323)
T TIGR01759 85 LVGAF 89 (323)
T ss_pred EeCCC
Confidence 97753
|
This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms. |
| >PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated | Back alignment and domain information |
|---|
Probab=89.15 E-value=0.44 Score=52.06 Aligned_cols=37 Identities=19% Similarity=0.163 Sum_probs=32.4
Q ss_pred eeccCCEEEEEecChhHHHHHHHhhcCCC-EEEEECCC
Q 007512 193 VSLVGKTLAVLGFGKVGSEVARRAKGLGM-HVIAHDPY 229 (600)
Q Consensus 193 ~~l~gktiGIIGlG~IG~~vA~~l~~~g~-~V~~~d~~ 229 (600)
..|.+.+|.|||+|-+|..+|+.|...|. ++..+|..
T Consensus 38 ~~L~~~~VlviG~GGlGs~va~~La~~Gvg~i~lvD~D 75 (392)
T PRK07878 38 KRLKNARVLVIGAGGLGSPTLLYLAAAGVGTLGIVEFD 75 (392)
T ss_pred HHHhcCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCC
Confidence 46899999999999999999999997775 78888864
|
|
| >TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase | Back alignment and domain information |
|---|
Probab=89.10 E-value=1.1 Score=46.80 Aligned_cols=35 Identities=20% Similarity=0.215 Sum_probs=29.3
Q ss_pred cCCEEEEEecChhHHHHHHHhhcCCCE-EEEECCCC
Q 007512 196 VGKTLAVLGFGKVGSEVARRAKGLGMH-VIAHDPYA 230 (600)
Q Consensus 196 ~gktiGIIGlG~IG~~vA~~l~~~g~~-V~~~d~~~ 230 (600)
.|+++.|+|.|.||...++.++.+|.+ |++.|...
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~ 179 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNP 179 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCH
Confidence 477899999999999999999999987 55666543
|
|
| >PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function | Back alignment and domain information |
|---|
Probab=89.00 E-value=0.32 Score=45.81 Aligned_cols=85 Identities=16% Similarity=0.175 Sum_probs=53.2
Q ss_pred ccCCEEEEEecChhHHHHHHHhhcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEecCCCcccccccc---H
Q 007512 195 LVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPADRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVLN---D 271 (600)
Q Consensus 195 l~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Pl~~~t~~li~---~ 271 (600)
..|++|++||+= +.++++++..+.++..+|.++........++.....++++++||+|++.-- | ++| .
T Consensus 9 ~~~~~V~~VG~f---~P~~~~l~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~l~~aD~viiTGs----T--lvN~Ti~ 79 (147)
T PF04016_consen 9 GPGDKVGMVGYF---QPLVEKLKERGAEVRVFDLNPDNIGEEPGDVPDEDAEEILPWADVVIITGS----T--LVNGTID 79 (147)
T ss_dssp TTTSEEEEES-----HCCHHHHCCCCSEEEEEESSGGG--SSCT-EEGGGHHHHGGG-SEEEEECH----H--CCTTTHH
T ss_pred cCCCEEEEEcCc---HHHHHHHhcCCCCEEEEECCCCCCCCCCCcCCHHHHHHHHccCCEEEEEee----e--eecCCHH
Confidence 468999999961 237888888899999999876322111112233457789999999988543 1 122 3
Q ss_pred hHhccCCCceEEEEccC
Q 007512 272 ETFGKMKKGVRIINVAR 288 (600)
Q Consensus 272 ~~l~~mk~gailvNvar 288 (600)
..++.++++..++=.|-
T Consensus 80 ~iL~~~~~~~~vil~Gp 96 (147)
T PF04016_consen 80 DILELARNAREVILYGP 96 (147)
T ss_dssp HHHHHTTTSSEEEEESC
T ss_pred HHHHhCccCCeEEEEec
Confidence 45666776666666653
|
; PDB: 3L5O_B 3NPG_A. |
| >PRK08374 homoserine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=88.83 E-value=1.4 Score=47.15 Aligned_cols=101 Identities=19% Similarity=0.294 Sum_probs=55.9
Q ss_pred CEEEEEecChhHHHHHHHhhc--------CC--CEEEEE-CCC-------C-ChhHHHH----cC----C------cccC
Q 007512 198 KTLAVLGFGKVGSEVARRAKG--------LG--MHVIAH-DPY-------A-PADRARA----IG----V------DLVS 244 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~--------~g--~~V~~~-d~~-------~-~~~~a~~----~g----~------~~~~ 244 (600)
.+|+|+|+|.+|+.+++.+.. +| .+|.+. |.+ . ..+.+.+ .+ + ...+
T Consensus 3 i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~~l~VvaV~ds~~~~~~~~Gid~~~l~~~~~~~~~~~~~~~~~~~~~~~ 82 (336)
T PRK08374 3 VKVSIFGFGNVGRAVAEVLAEKSRVFKERYGVELKVVSITDTSGTIWLPEDIDLREAKEVKENFGKLSNWGNDYEVYNFS 82 (336)
T ss_pred eEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCccccCCCCCChHHHHHhhhccCchhhccccccccCCC
Confidence 489999999999999998865 55 566653 422 1 2221111 11 0 1126
Q ss_pred HHHHh--ccCCEEEEecCCCccccccccHhHhccCCCceEEEEccCCccc-cHHHHHHhHhc
Q 007512 245 FDEAI--ATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVI-DEEALVRALDS 303 (600)
Q Consensus 245 l~ell--~~aDvV~l~~Pl~~~t~~li~~~~l~~mk~gailvNvarg~iv-de~aL~~aL~~ 303 (600)
+++++ .++|+|+-+++.. ... .-....++.|.-+|-...|.+- ..++|.+..++
T Consensus 83 ~~ell~~~~~DVvVd~t~~~-~a~----~~~~~al~~G~~VVtanK~~la~~~~el~~la~~ 139 (336)
T PRK08374 83 PEEIVEEIDADIVVDVTNDK-NAH----EWHLEALKEGKSVVTSNKPPIAFHYDELLDLANE 139 (336)
T ss_pred HHHHHhcCCCCEEEECCCcH-HHH----HHHHHHHhhCCcEEECCHHHHHhCHHHHHHHHHH
Confidence 67777 5799999877522 122 1122335566666655555433 34455444333
|
|
| >PRK05442 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=88.81 E-value=0.61 Score=49.70 Aligned_cols=63 Identities=21% Similarity=0.133 Sum_probs=42.0
Q ss_pred CEEEEEec-ChhHHHHHHHhhcCCC-------EEEEECCCCCh--hHHHHc-----------CCcc-cCHHHHhccCCEE
Q 007512 198 KTLAVLGF-GKVGSEVARRAKGLGM-------HVIAHDPYAPA--DRARAI-----------GVDL-VSFDEAIATADFI 255 (600)
Q Consensus 198 ktiGIIGl-G~IG~~vA~~l~~~g~-------~V~~~d~~~~~--~~a~~~-----------g~~~-~~l~ell~~aDvV 255 (600)
++|+|||. |.+|..+|-.+...|+ ++..+|..... ..+..+ .+.. .+..+.+++||+|
T Consensus 5 ~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~y~~~~daDiV 84 (326)
T PRK05442 5 VRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLLAGVVITDDPNVAFKDADVA 84 (326)
T ss_pred cEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhcCCcEEecChHHHhCCCCEE
Confidence 48999998 9999999998764332 78899974321 111110 1111 2455889999999
Q ss_pred EEecC
Q 007512 256 SLHMP 260 (600)
Q Consensus 256 ~l~~P 260 (600)
+++.-
T Consensus 85 VitaG 89 (326)
T PRK05442 85 LLVGA 89 (326)
T ss_pred EEeCC
Confidence 99775
|
|
| >PRK08040 putative semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=88.79 E-value=0.51 Score=50.49 Aligned_cols=86 Identities=16% Similarity=0.115 Sum_probs=53.4
Q ss_pred cCCEEEEEec-ChhHHHHHHHhhc--C-CCEEEEECCCCCh--hH-HHHcCCcccCHHHH-hccCCEEEEecCCCccccc
Q 007512 196 VGKTLAVLGF-GKVGSEVARRAKG--L-GMHVIAHDPYAPA--DR-ARAIGVDLVSFDEA-IATADFISLHMPLTPATSK 267 (600)
Q Consensus 196 ~gktiGIIGl-G~IG~~vA~~l~~--~-g~~V~~~d~~~~~--~~-a~~~g~~~~~l~el-l~~aDvV~l~~Pl~~~t~~ 267 (600)
++.+|+|||. |.+|+.+.+.|.. | ..++..+....+. .. .........++++. +.++|++++|+|..
T Consensus 3 ~~~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS~~saG~~~~~~~~~~~v~~~~~~~~~~~Dvvf~a~p~~----- 77 (336)
T PRK08040 3 EGWNIALLGATGAVGEALLELLAERQFPVGELYALASEESAGETLRFGGKSVTVQDAAEFDWSQAQLAFFVAGRE----- 77 (336)
T ss_pred CCCEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEccCcCCceEEECCcceEEEeCchhhccCCCEEEECCCHH-----
Confidence 4668999997 9999999999987 5 4566554322111 10 00001222244443 37899999999943
Q ss_pred cccHhHhcc-CCCceEEEEcc
Q 007512 268 VLNDETFGK-MKKGVRIINVA 287 (600)
Q Consensus 268 li~~~~l~~-mk~gailvNva 287 (600)
+..+.... .+.|+.+||.+
T Consensus 78 -~s~~~~~~~~~~g~~VIDlS 97 (336)
T PRK08040 78 -ASAAYAEEATNAGCLVIDSS 97 (336)
T ss_pred -HHHHHHHHHHHCCCEEEECC
Confidence 22333332 26799999987
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 600 | ||||
| 2g76_A | 335 | Crystal Structure Of Human 3-Phosphoglycerate Dehyd | 2e-64 | ||
| 3ddn_A | 528 | Crystal Structure Of Hydroxypyruvic Acid Phosphate | 1e-62 | ||
| 1ygy_A | 529 | Crystal Structure Of D-3-Phosphoglycerate Dehydroge | 2e-62 | ||
| 1wwk_A | 307 | Crystal Structure Of Phosphoglycerate Dehydrogenase | 5e-45 | ||
| 2dbr_A | 334 | Crystal Structure Of Glyoxylate Reductase (Ph0597) | 7e-35 | ||
| 2ekl_A | 313 | Structure Of St1218 Protein From Sulfolobus Tokodai | 1e-34 | ||
| 2dbq_A | 334 | Crystal Structure Of Glyoxylate Reductase (Ph0597) | 1e-32 | ||
| 2d0i_A | 333 | Crystal Structure Ph0520 Protein From Pyrococcus Ho | 1e-30 | ||
| 3k5p_A | 416 | Crystal Structure Of Amino Acid-Binding Act: D-Isom | 6e-30 | ||
| 2gcg_A | 330 | Ternary Crystal Structure Of Human Glyoxylate Reduc | 5e-26 | ||
| 2h1s_A | 328 | Crystal Structure Of A GlyoxylateHYDROXYPYRUVATE RE | 4e-25 | ||
| 2cuk_A | 311 | Crystal Structure Of Tt0316 Protein From Thermus Th | 5e-25 | ||
| 2p9c_A | 410 | Crystal Structure Of Serine Bound G336v Mutant Of E | 6e-25 | ||
| 2p9g_A | 410 | Crystal Structure Of Serine Bound G336v,G337v Doubl | 6e-25 | ||
| 2ome_A | 336 | Crystal Structure Of Human Ctbp2 Dehydrogenase Comp | 1e-24 | ||
| 1psd_A | 409 | The Allosteric Ligand Site In The Vmax-Type Coopera | 1e-24 | ||
| 1hl3_A | 358 | CtbpBARS IN TERNARY COMPLEX WITH NAD(H) AND PIDLSKK | 2e-23 | ||
| 1mx3_A | 347 | Crystal Structure Of Ctbp Dehydrogenase Core Holo F | 2e-23 | ||
| 1hku_A | 358 | CtbpBARS: A DUAL-Function Protein Involved In Trans | 2e-23 | ||
| 4e5n_A | 330 | Thermostable Phosphite Dehydrogenase In Complex Wit | 3e-23 | ||
| 4e5k_A | 329 | Thermostable Phosphite Dehydrogenase In Complex Wit | 3e-23 | ||
| 3ga0_A | 358 | Ctbp1BARS GLY172->glu Mutant Structure: Impairing N | 1e-22 | ||
| 4e5p_A | 332 | Thermostable Phosphite Dehydrogenase A176r Variant | 3e-22 | ||
| 4e5m_A | 329 | Thermostable Phosphite Dehydrogenase E175aA176R IN | 3e-22 | ||
| 1yba_A | 410 | The Active Form Of Phosphoglycerate Dehydrogenase L | 3e-22 | ||
| 1gdh_A | 320 | Crystal Structure Of A Nad-Dependent D-Glycerate De | 4e-22 | ||
| 3gg9_A | 352 | Crystal Structure Of Putative D-3-Phosphoglycerate | 2e-21 | ||
| 4ebf_A | 334 | Semet Thermostable Phosphite Dehydrogenase Glu175-A | 2e-21 | ||
| 4g2n_A | 345 | Crystal Structure Of Putative D-Isomer Specific 2-H | 2e-21 | ||
| 3naq_A | 357 | Apo-Form Of Nad-Dependent Formate Dehydrogenase Fro | 4e-21 | ||
| 3n7u_A | 351 | Nad-Dependent Formate Dehydrogenase From Higher-Pla | 4e-21 | ||
| 2w2l_D | 348 | Crystal Structure Of The Holo Forms Of Rhodotorula | 5e-21 | ||
| 1dxy_A | 333 | Structure Of D-2-Hydroxyisocaproate Dehydrogenase L | 6e-21 | ||
| 2w2k_A | 348 | Crystal Structure Of The Apo Forms Of Rhodotorula G | 7e-21 | ||
| 1sc6_A | 404 | Crystal Structure Of W139g D-3-Phosphoglycerate Deh | 8e-21 | ||
| 2w2k_B | 348 | Crystal Structure Of The Apo Forms Of Rhodotorula G | 9e-21 | ||
| 1j49_A | 333 | Insights Into Domain Closure, Substrate Specificity | 2e-20 | ||
| 2dld_A | 337 | D-Lactate Dehydrogenase Complexed With Nadh And Oxa | 3e-20 | ||
| 1j4a_A | 333 | Insights Into Domain Closure, Substrate Specificity | 1e-19 | ||
| 3kb6_A | 334 | Crystal Structure Of D-lactate Dehydrogenase From A | 1e-19 | ||
| 3evt_A | 324 | Crystal Structure Of Phosphoglycerate Dehydrogenase | 2e-19 | ||
| 3hg7_A | 324 | Crystal Structure Of D-Isomer Specific 2-Hydroxyaci | 3e-19 | ||
| 3ba1_A | 333 | Structure Of Hydroxyphenylpyruvate Reductase From C | 1e-18 | ||
| 2gsd_A | 402 | Nad-dependent Formate Dehydrogenase From Bacterium | 2e-18 | ||
| 3fn4_A | 401 | Apo-form Of Nad-dependent Formate Dehydrogenase Fro | 3e-18 | ||
| 2go1_A | 401 | Nad-Dependent Formate Dehydrogenase From Pseudomona | 7e-18 | ||
| 2nac_A | 393 | High Resolution Structures Of Holo And Apo Formate | 8e-18 | ||
| 2gug_A | 401 | Nad-dependent Formate Dehydrogenase From Pseudomona | 8e-18 | ||
| 2yq4_A | 343 | Crystal Structure Of D-isomer Specific 2-hydroxyaci | 5e-17 | ||
| 4dgs_A | 340 | The Crystals Structure Of Dehydrogenase From Rhizob | 2e-16 | ||
| 1xdw_A | 331 | Nad+-Dependent (R)-2-Hydroxyglutarate Dehydrogenase | 2e-14 | ||
| 3oet_A | 381 | D-Erythronate-4-Phosphate Dehydrogenase Complexed W | 2e-14 | ||
| 2fss_A | 365 | Candida Boidinii Formate Dehydrogenase (Fdh) K47e M | 2e-13 | ||
| 2j6i_A | 364 | Candida Boidinii Formate Dehydrogenase (Fdh) C-Term | 2e-13 | ||
| 3kbo_A | 315 | 2.14 Angstrom Crystal Structure Of Putative Oxidore | 3e-13 | ||
| 4hy3_A | 365 | Crystal Structure Of A Phosphoglycerate Oxidoreduct | 1e-12 | ||
| 2o4c_A | 380 | Crystal Structure Of D-erythronate-4-phosphate Dehy | 7e-12 | ||
| 3gvx_A | 290 | Crystal Structure Of Glycerate Dehydrogenase Relate | 3e-04 |
| >pdb|2G76|A Chain A, Crystal Structure Of Human 3-Phosphoglycerate Dehydrogenase Length = 335 | Back alignment and structure |
|
| >pdb|3DDN|A Chain A, Crystal Structure Of Hydroxypyruvic Acid Phosphate Bound D-3- Phosphoglycerate Dehydrogenase In Mycobacterium Tuberculosis Length = 528 | Back alignment and structure |
|
| >pdb|1YGY|A Chain A, Crystal Structure Of D-3-Phosphoglycerate Dehydrogenase From Mycobacterium Tuberculosis Length = 529 | Back alignment and structure |
|
| >pdb|1WWK|A Chain A, Crystal Structure Of Phosphoglycerate Dehydrogenase From Pyrococcus Horikoshii Ot3 Length = 307 | Back alignment and structure |
|
| >pdb|2DBR|A Chain A, Crystal Structure Of Glyoxylate Reductase (Ph0597) From Pyrococcus Horikoshii Ot3, Complexed With Nadp (P1) Length = 334 | Back alignment and structure |
|
| >pdb|2EKL|A Chain A, Structure Of St1218 Protein From Sulfolobus Tokodaii Length = 313 | Back alignment and structure |
|
| >pdb|2DBQ|A Chain A, Crystal Structure Of Glyoxylate Reductase (Ph0597) From Pyrococcus Horikoshii Ot3, Complexed With Nadp (I41) Length = 334 | Back alignment and structure |
|
| >pdb|2D0I|A Chain A, Crystal Structure Ph0520 Protein From Pyrococcus Horikoshii Ot3 Length = 333 | Back alignment and structure |
|
| >pdb|3K5P|A Chain A, Crystal Structure Of Amino Acid-Binding Act: D-Isomer Specific 2- Hydroxyacid Dehydrogenase Catalytic Domain From Brucella Melitensis Length = 416 | Back alignment and structure |
|
| >pdb|2GCG|A Chain A, Ternary Crystal Structure Of Human Glyoxylate ReductaseHYDROXYPYRUVATE REDUCTASE Length = 330 | Back alignment and structure |
|
| >pdb|2H1S|A Chain A, Crystal Structure Of A GlyoxylateHYDROXYPYRUVATE REDUCTASE FROM HOMO Sapiens Length = 328 | Back alignment and structure |
|
| >pdb|2CUK|A Chain A, Crystal Structure Of Tt0316 Protein From Thermus Thermophilus Hb8 Length = 311 | Back alignment and structure |
|
| >pdb|2P9C|A Chain A, Crystal Structure Of Serine Bound G336v Mutant Of E.Coli Phosphoglycerate Dehydrogenase Length = 410 | Back alignment and structure |
|
| >pdb|2P9G|A Chain A, Crystal Structure Of Serine Bound G336v,G337v Double Mutant Of E.Coli Phosphoglycerate Dehydrogenase Length = 410 | Back alignment and structure |
|
| >pdb|2OME|A Chain A, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed With Nad(H) Length = 336 | Back alignment and structure |
|
| >pdb|1PSD|A Chain A, The Allosteric Ligand Site In The Vmax-Type Cooperative Enzyme Phosphoglycerate Dehydrogenase Length = 409 | Back alignment and structure |
|
| >pdb|1HL3|A Chain A, CtbpBARS IN TERNARY COMPLEX WITH NAD(H) AND PIDLSKK PEPTIDE Length = 358 | Back alignment and structure |
|
| >pdb|1MX3|A Chain A, Crystal Structure Of Ctbp Dehydrogenase Core Holo Form Length = 347 | Back alignment and structure |
|
| >pdb|1HKU|A Chain A, CtbpBARS: A DUAL-Function Protein Involved In Transcription Corepression And Golgi Membrane Fission Length = 358 | Back alignment and structure |
|
| >pdb|4E5N|A Chain A, Thermostable Phosphite Dehydrogenase In Complex With Nad Length = 330 | Back alignment and structure |
|
| >pdb|4E5K|A Chain A, Thermostable Phosphite Dehydrogenase In Complex With Nad And Sulfite Length = 329 | Back alignment and structure |
|
| >pdb|3GA0|A Chain A, Ctbp1BARS GLY172->glu Mutant Structure: Impairing Nad(H) Binding And Dimerization Length = 358 | Back alignment and structure |
|
| >pdb|4E5P|A Chain A, Thermostable Phosphite Dehydrogenase A176r Variant In Complex With Nad Length = 332 | Back alignment and structure |
|
| >pdb|4E5M|A Chain A, Thermostable Phosphite Dehydrogenase E175aA176R IN COMPLEX WITH NADP Length = 329 | Back alignment and structure |
|
| >pdb|1YBA|A Chain A, The Active Form Of Phosphoglycerate Dehydrogenase Length = 410 | Back alignment and structure |
|
| >pdb|1GDH|A Chain A, Crystal Structure Of A Nad-Dependent D-Glycerate Dehydrogenase At 2.4 Angstroms Resolution Length = 320 | Back alignment and structure |
|
| >pdb|3GG9|A Chain A, Crystal Structure Of Putative D-3-Phosphoglycerate Dehydrogenase Oxidoreductase From Ralstonia Solanacearum Length = 352 | Back alignment and structure |
|
| >pdb|4EBF|A Chain A, Semet Thermostable Phosphite Dehydrogenase Glu175-Ala Mutant Length = 334 | Back alignment and structure |
|
| >pdb|4G2N|A Chain A, Crystal Structure Of Putative D-Isomer Specific 2-Hydroxyacid Dehydrogenase, Nad-Binding From Polaromonas Sp. Js6 66 Length = 345 | Back alignment and structure |
|
| >pdb|3NAQ|A Chain A, Apo-Form Of Nad-Dependent Formate Dehydrogenase From Higher-Plant Arabidopsis Thaliana Length = 357 | Back alignment and structure |
|
| >pdb|3N7U|A Chain A, Nad-Dependent Formate Dehydrogenase From Higher-Plant Arabid Thaliana In Complex With Nad And Azide Length = 351 | Back alignment and structure |
|
| >pdb|2W2L|D Chain D, Crystal Structure Of The Holo Forms Of Rhodotorula Graminis D-Mandelate Dehydrogenase At 2.5a Length = 348 | Back alignment and structure |
|
| >pdb|1DXY|A Chain A, Structure Of D-2-Hydroxyisocaproate Dehydrogenase Length = 333 | Back alignment and structure |
|
| >pdb|2W2K|A Chain A, Crystal Structure Of The Apo Forms Of Rhodotorula Graminis D-Mandelate Dehydrogenase At 1.8a. Length = 348 | Back alignment and structure |
|
| >pdb|1SC6|A Chain A, Crystal Structure Of W139g D-3-Phosphoglycerate Dehydrogenase Complexed With Nad+ Length = 404 | Back alignment and structure |
|
| >pdb|2W2K|B Chain B, Crystal Structure Of The Apo Forms Of Rhodotorula Graminis D-Mandelate Dehydrogenase At 1.8a Length = 348 | Back alignment and structure |
|
| >pdb|1J49|A Chain A, Insights Into Domain Closure, Substrate Specificity And Catalysis Of D-Lactate Dehydrogenase From Lactobacillus Bulgaricus Length = 333 | Back alignment and structure |
|
| >pdb|2DLD|A Chain A, D-Lactate Dehydrogenase Complexed With Nadh And Oxamate Length = 337 | Back alignment and structure |
|
| >pdb|1J4A|A Chain A, Insights Into Domain Closure, Substrate Specificity And Catalysis Of D-Lactate Dehydrogenase From Lactobacillus Bulgaricus Length = 333 | Back alignment and structure |
|
| >pdb|3KB6|A Chain A, Crystal Structure Of D-lactate Dehydrogenase From Aquifex Aeolicus Complexed With Nad And Lactic Acid Length = 334 | Back alignment and structure |
|
| >pdb|3EVT|A Chain A, Crystal Structure Of Phosphoglycerate Dehydrogenase From Lactobacillus Plantarum Length = 324 | Back alignment and structure |
|
| >pdb|3HG7|A Chain A, Crystal Structure Of D-Isomer Specific 2-Hydroxyacid Dehydrogenase Family Protein From Aeromonas Salmonicida Subsp. Salmonicida A449 Length = 324 | Back alignment and structure |
|
| >pdb|3BA1|A Chain A, Structure Of Hydroxyphenylpyruvate Reductase From Coleus Blu Length = 333 | Back alignment and structure |
|
| >pdb|2GSD|A Chain A, Nad-dependent Formate Dehydrogenase From Bacterium Moraxella Sp.c2 In Complex With Nad And Azide Length = 402 | Back alignment and structure |
|
| >pdb|3FN4|A Chain A, Apo-form Of Nad-dependent Formate Dehydrogenase From Bacterium Moraxella Sp.c-1 In Closed Conformation Length = 401 | Back alignment and structure |
|
| >pdb|2GO1|A Chain A, Nad-Dependent Formate Dehydrogenase From Pseudomonas Sp.101 Length = 401 | Back alignment and structure |
|
| >pdb|2NAC|A Chain A, High Resolution Structures Of Holo And Apo Formate Dehydrogenase Length = 393 | Back alignment and structure |
|
| >pdb|2GUG|A Chain A, Nad-dependent Formate Dehydrogenase From Pseudomonas Sp.101 In Complex With Formate Length = 401 | Back alignment and structure |
|
| >pdb|2YQ4|A Chain A, Crystal Structure Of D-isomer Specific 2-hydroxyacid Dehydrogenase From Lactobacillus Delbrueckii Ssp. Bulgaricus Length = 343 | Back alignment and structure |
|
| >pdb|4DGS|A Chain A, The Crystals Structure Of Dehydrogenase From Rhizobium Meliloti Length = 340 | Back alignment and structure |
|
| >pdb|1XDW|A Chain A, Nad+-Dependent (R)-2-Hydroxyglutarate Dehydrogenase From Acidaminococcus Fermentans Length = 331 | Back alignment and structure |
|
| >pdb|3OET|A Chain A, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad Length = 381 | Back alignment and structure |
|
| >pdb|2FSS|A Chain A, Candida Boidinii Formate Dehydrogenase (Fdh) K47e Mutant Length = 365 | Back alignment and structure |
|
| >pdb|2J6I|A Chain A, Candida Boidinii Formate Dehydrogenase (Fdh) C-Terminal Mutant Length = 364 | Back alignment and structure |
|
| >pdb|3KBO|A Chain A, 2.14 Angstrom Crystal Structure Of Putative Oxidoreductase (ycdw) From Salmonella Typhimurium In Complex With Nadp Length = 315 | Back alignment and structure |
|
| >pdb|4HY3|A Chain A, Crystal Structure Of A Phosphoglycerate Oxidoreductase From Rhizobium Etli Length = 365 | Back alignment and structure |
|
| >pdb|2O4C|A Chain A, Crystal Structure Of D-erythronate-4-phosphate Dehydrogenase Complexed With Nad Length = 380 | Back alignment and structure |
|
| >pdb|3GVX|A Chain A, Crystal Structure Of Glycerate Dehydrogenase Related Protein From Thermoplasma Acidophilum Length = 290 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 600 | |||
| 1ygy_A | 529 | PGDH, D-3-phosphoglycerate dehydrogenase; oxidored | 0.0 | |
| 1wwk_A | 307 | Phosphoglycerate dehydrogenase; riken structural g | 1e-170 | |
| 2g76_A | 335 | 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor | 1e-169 | |
| 3k5p_A | 416 | D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, | 1e-165 | |
| 2d0i_A | 333 | Dehydrogenase; structural genomics, NPPSFA, nation | 1e-160 | |
| 2ekl_A | 313 | D-3-phosphoglycerate dehydrogenase; structural gen | 1e-158 | |
| 1sc6_A | 404 | PGDH, D-3-phosphoglycerate dehydrogenase; alloster | 1e-153 | |
| 1mx3_A | 347 | CTBP1, C-terminal binding protein 1; nuclear prote | 1e-152 | |
| 2j6i_A | 364 | Formate dehydrogenase; oxidoreductase, D-specific- | 1e-140 | |
| 3jtm_A | 351 | Formate dehydrogenase, mitochondrial; mitochondrio | 1e-140 | |
| 3gg9_A | 352 | D-3-phosphoglycerate dehydrogenase oxidoreductase; | 1e-133 | |
| 2o4c_A | 380 | Erythronate-4-phosphate dehydrogenase; erythronate | 1e-132 | |
| 2nac_A | 393 | NAD-dependent formate dehydrogenase; oxidoreductas | 1e-130 | |
| 3gvx_A | 290 | Glycerate dehydrogenase related protein; NYSGXRC, | 1e-129 | |
| 3oet_A | 381 | Erythronate-4-phosphate dehydrogenase; structural | 1e-125 | |
| 4e5n_A | 330 | Thermostable phosphite dehydrogenase; D-2-hydroxya | 1e-123 | |
| 2dbq_A | 334 | Glyoxylate reductase; D-3-phosphoglycerate dehydro | 1e-117 | |
| 2pi1_A | 334 | D-lactate dehydrogenase; oxidoreductase, D-LDH, NA | 1e-112 | |
| 1dxy_A | 333 | D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc | 1e-111 | |
| 1j4a_A | 333 | D-LDH, D-lactate dehydrogenase; NAD-dependent dehy | 1e-111 | |
| 1xdw_A | 331 | NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas | 1e-106 | |
| 1gdh_A | 320 | D-glycerate dehydrogenase; oxidoreductase(CHOH (D) | 1e-103 | |
| 2cuk_A | 311 | Glycerate dehydrogenase/glyoxylate reductase; stru | 1e-103 | |
| 1qp8_A | 303 | Formate dehydrogenase; oxidoreductase; HET: NDP; 2 | 1e-100 | |
| 2gcg_A | 330 | Glyoxylate reductase/hydroxypyruvate reductase; NA | 2e-99 | |
| 2w2k_A | 348 | D-mandelate dehydrogenase; 2-hydroxyacid dehydroge | 1e-91 | |
| 4g2n_A | 345 | D-isomer specific 2-hydroxyacid dehydrogenase, Na; | 8e-91 | |
| 3evt_A | 324 | Phosphoglycerate dehydrogenase; structural genomic | 5e-89 | |
| 4dgs_A | 340 | Dehydrogenase; structural genomics, PSI-biology, N | 5e-80 | |
| 3ba1_A | 333 | HPPR, hydroxyphenylpyruvate reductase; two domain | 2e-78 | |
| 3hg7_A | 324 | D-isomer specific 2-hydroxyacid dehydrogenase FAM | 5e-60 | |
| 3pp8_A | 315 | Glyoxylate/hydroxypyruvate reductase A; structural | 5e-54 | |
| 3d4o_A | 293 | Dipicolinate synthase subunit A; NP_243269.1, stru | 8e-17 | |
| 2rir_A | 300 | Dipicolinate synthase, A chain; structural genomic | 1e-07 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 7e-07 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 3e-04 | |
| 1c1d_A | 355 | L-phenylalanine dehydrogenase; amino acid dehydrog | 2e-06 | |
| 3gvp_A | 435 | Adenosylhomocysteinase 3; protein CO-factor comple | 2e-05 | |
| 1leh_A | 364 | Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi | 3e-05 | |
| 3c24_A | 286 | Putative oxidoreductase; YP_511008.1, structural g | 3e-05 | |
| 3h9u_A | 436 | Adenosylhomocysteinase; NAD CO-factor complex, str | 4e-05 | |
| 3n58_A | 464 | Adenosylhomocysteinase; ssgcid, hydrolase, structu | 4e-05 | |
| 3d64_A | 494 | Adenosylhomocysteinase; structural genomics, ssgci | 1e-04 | |
| 1v8b_A | 479 | Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2 | 3e-04 | |
| 3ce6_A | 494 | Adenosylhomocysteinase; protein-substrate complex, | 4e-04 | |
| 3aoe_E | 419 | Glutamate dehydrogenase; rossmann fold, NADH, oxid | 6e-04 | |
| 3ktd_A | 341 | Prephenate dehydrogenase; structural genomics, joi | 7e-04 | |
| 3aog_A | 440 | Glutamate dehydrogenase; NAD(H), oxidoreducta; HET | 8e-04 |
| >1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A* Length = 529 | Back alignment and structure |
|---|
Score = 667 bits (1724), Expect = 0.0
Identities = 187/546 (34%), Positives = 286/546 (52%), Gaps = 22/546 (4%)
Query: 57 SKPTVLIAEKLGQAGLDLLNEFANVDCAYNLSPEELCTKISLCDALIVRSGTKVNRDVFE 116
S P VLIA+KL + + L + V ++L + DAL+VRS T V+ +V
Sbjct: 3 SLPVVLIADKLAPSTVAALGDQVEVRWVDGPDRDKLLAAVPEADALLVRSATTVDAEVLA 62
Query: 117 SSAGRLKVVGRAGVGIDNVDLAAATEFGCLVVNAPTANTVAAAEHGIALLAAMARNVAQA 176
+ A +LK+V RAGVG+DNVD+ AAT G LVVNAPT+N +AAEH +ALL A +R + A
Sbjct: 63 A-APKLKIVARAGVGLDNVDVDAATARGVLVVNAPTSNIHSAAEHALALLLAASRQIPAA 121
Query: 177 DASVKAGKWQRNKYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPADRAR 236
DAS++ W+R+ + G + GKT+ V+G G++G VA+R G +V+A+DPY RA
Sbjct: 122 DASLREHTWKRSSFSGTEIFGKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYVSPARAA 181
Query: 237 AIGVDLVSFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVIDEEA 296
+G++L+S D+ +A ADFIS+H+P TP T+ +++ E K K GV I+N ARGG++DE A
Sbjct: 182 QLGIELLSLDDLLARADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAARGGLVDEAA 241
Query: 297 LVRALDSGRVAQAALDVFTEEPPPADSKLVQHERVTVTPHLGASTMEAQEGVAIEIAEAV 356
L A+ G V A LDVF EP DS L + +V VTPHLGAST EAQ+ ++AE+V
Sbjct: 242 LADAITGGHVRAAGLDVFATEPCT-DSPLFELAQVVVTPHLGASTAEAQDRAGTDVAESV 300
Query: 357 VGALKGELAATAVNAPMVPAEVLTELKPFVELAEKLGRLAVQLVAGGSGVKTVKVSYASS 416
AL GE AVN E+ P+++L KLG LA L ++ V
Sbjct: 301 RLALAGEFVPDAVNVGGGVVN--EEVAPWLDLVRKLGVLAGVLS--DELPVSLSVQVRGE 356
Query: 417 RAPDDLDTRLLRAMITKGLIEPISDVFVNLVNADYTAKQRGLRLTEERILLDGSPESPLE 476
A + +LR +GL + + V VNA A +RG+ + +
Sbjct: 357 LA--AEEVEVLRLSALRGLFSAVIEDAVTFVNAPALAAERGVTAEICK---ASESPNHRS 411
Query: 477 FIQVQIANVESKFASAISESGEIKVEGRV--KDGVPHLTKVGSFEVDVSLEGSIILCRQV 534
+ V+ ++ + V G + + ++ D+ +G ++ V
Sbjct: 412 VVDVRAVG---------ADGSVVTVSGTLYGPQLSQKIVQINGRHFDLRAQGINLIIHYV 462
Query: 535 DQPGMIGTVGSILGSENVNVSFMSVGRVAPRKHAVMAIGVDEQPRKETLKKIGDVPAIEE 594
D+PG +G +G++LG+ VN+ + A A + + +D+ + I +
Sbjct: 463 DRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPGATILLRLDQDVPDDVRTAIAAAVDAYK 522
Query: 595 FVFLKL 600
+ L
Sbjct: 523 LEVVDL 528
|
| >1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii} Length = 307 | Back alignment and structure |
|---|
Score = 484 bits (1248), Expect = e-170
Identities = 125/307 (40%), Positives = 191/307 (62%), Gaps = 2/307 (0%)
Query: 57 SKPTVLIAEKLGQAGLDLLNEFA-NVDCAYNLSPEELCTKISLCDALIVRSGTKVNRDVF 115
+ VL+A L + + +L + V + L + +A+IVRS KV R V
Sbjct: 2 KRMKVLVAAPLHEKAIQVLKDAGLEVIYEEYPDEDRLVELVKDVEAIIVRSKPKVTRRVI 61
Query: 116 ESSAGRLKVVGRAGVGIDNVDLAAATEFGCLVVNAPTANTVAAAEHGIALLAAMARNVAQ 175
ES A +LKV+ RAGVG+DN+D+ AA E G VVNAP A++ + AE + L+ ++AR +A
Sbjct: 62 ES-APKLKVIARAGVGLDNIDVEAAKEKGIEVVNAPAASSRSVAELAVGLMFSVARKIAF 120
Query: 176 ADASVKAGKWQRNKYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPADRA 235
AD ++ G W + + +G+ L GKT+ ++GFG++G +VA+ A LGM+++ +DPY +RA
Sbjct: 121 ADRKMREGVWAKKEAMGIELEGKTIGIIGFGRIGYQVAKIANALGMNILLYDPYPNEERA 180
Query: 236 RAIGVDLVSFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVIDEE 295
+ + V + + +D +++H+PL +T ++N+E MKK +IN +RG V+D
Sbjct: 181 KEVNGKFVDLETLLKESDVVTIHVPLVESTYHLINEERLKLMKKTAILINTSRGPVVDTN 240
Query: 296 ALVRALDSGRVAQAALDVFTEEPPPADSKLVQHERVTVTPHLGASTMEAQEGVAIEIAEA 355
ALV+AL G +A A LDVF EEP P D L + + V +TPH+GAST+EAQE +E+AE
Sbjct: 241 ALVKALKEGWIAGAGLDVFEEEPLPKDHPLTKFDNVVLTPHIGASTVEAQERAGVEVAEK 300
Query: 356 VVGALKG 362
VV LKG
Sbjct: 301 VVKILKG 307
|
| >2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens} Length = 335 | Back alignment and structure |
|---|
Score = 482 bits (1243), Expect = e-169
Identities = 149/310 (48%), Positives = 199/310 (64%), Gaps = 3/310 (0%)
Query: 55 ISSKPTVLIAEKLGQAGLDLLNEFA-NVDCAYNLSPEELCTKISLCDALIVRSGTKVNRD 113
+++ VLI++ L +L + V NLS EEL ++ C+ LIVRS TKV D
Sbjct: 23 MANLRKVLISDSLDPCCRKILQDGGLQVVEKQNLSKEELIAELQDCEGLIVRSATKVTAD 82
Query: 114 VFESSAGRLKVVGRAGVGIDNVDLAAATEFGCLVVNAPTANTVAAAEHGIALLAAMARNV 173
V + A +L+VVGRAG G+DNVDL AAT G LV+N P N+++AAE ++ +AR +
Sbjct: 83 VINA-AEKLQVVGRAGTGVDNVDLEAATRKGILVMNTPNGNSLSAAELTCGMIMCLARQI 141
Query: 174 AQADASVKAGKWQRNKYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPAD 233
QA AS+K GKW+R K++G L GKTL +LG G++G EVA R + GM I +DP +
Sbjct: 142 PQATASMKDGKWERKKFMGTELNGKTLGILGLGRIGREVATRMQSFGMKTIGYDPIISPE 201
Query: 234 RARAIGVDLVSFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVID 293
+ + GV + +E DFI++H PL P+T+ +LND TF + KKGVR++N ARGG++D
Sbjct: 202 VSASFGVQQLPLEEIWPLCDFITVHTPLLPSTTGLLNDNTFAQCKKGVRVVNCARGGIVD 261
Query: 294 EEALVRALDSGRVAQAALDVFTEEPPPADSKLVQHERVTVTPHLGASTMEAQEGVAIEIA 353
E AL+RAL SG+ A AALDVFTEEPP D LV HE V PHLGAST EAQ EIA
Sbjct: 262 EGALLRALQSGQCAGAALDVFTEEPPR-DRALVDHENVISCPHLGASTKEAQSRCGEEIA 320
Query: 354 EAVVGALKGE 363
V +KG+
Sbjct: 321 VQFVDMVKGK 330
|
| >3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus} Length = 416 | Back alignment and structure |
|---|
Score = 476 bits (1227), Expect = e-165
Identities = 115/367 (31%), Positives = 173/367 (47%), Gaps = 14/367 (3%)
Query: 40 APPRLVIIASAAADGISSKPTVLIAEKLGQAGLDLLNEFANVDCAY---NLSPEELCTKI 96
P + S + D + VL+ E + Q ++ + + L +L I
Sbjct: 1 GPGSMTERLSLSRD----RINVLLLEGISQTAVEYFKSSGYTNVTHLPKALDKADLIKAI 56
Query: 97 SLCDALIVRSGTKVNRDVFESSAGRLKVVGRAGVGIDNVDLAAATEFGCLVVNAPTANTV 156
S + +RS T++ ++F + A RL VG VG + V+L AA + G V NAP +NT
Sbjct: 57 SSAHIIGIRSRTQLTEEIFAA-ANRLIAVGCFSVGTNQVELKAARKRGIPVFNAPFSNTR 115
Query: 157 AAAEHGIALLAAMARNVAQADASVKAGKWQRNKYVGVSLVGKTLAVLGFGKVGSEVARRA 216
+ AE I + + R + S AG W++ + GKTL ++G+G +GS+V A
Sbjct: 116 SVAELVIGEIIMLMRRIFPRSVSAHAGGWEKTAIGSREVRGKTLGIVGYGNIGSQVGNLA 175
Query: 217 KGLGMHVIAHDPYAPADRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVLNDETFGK 276
+ LGM V +D S DE + T+D +SLH+P + +TSK++ + K
Sbjct: 176 ESLGMTVRYYDTSDKLQYGNVKPA--ASLDELLKTSDVVSLHVPSSKSTSKLITEAKLRK 233
Query: 277 MKKGVRIINVARGGVIDEEALVRALDSGRVAQAALDVFTEEPP----PADSKLVQHERVT 332
MKKG +IN ARG +D EAL + L G +A AA+DVF EP + L E V
Sbjct: 234 MKKGAFLINNARGSDVDLEALAKVLQEGHLAGAAIDVFPVEPASNGERFSTPLQGLENVI 293
Query: 333 VTPHLGASTMEAQEGVAIEIAEAVVGALKGELAATAVNAPMVPAEVLTELKPFVELAEKL 392
+TPH+G ST EAQE + E+ +V AVN P V F+ + E
Sbjct: 294 LTPHIGGSTEEAQERIGTEVTRKLVEYSDVGSTVGAVNFPQVQLPPRPTGTRFMHVHENR 353
Query: 393 GRLAVQL 399
+ L
Sbjct: 354 PGILNSL 360
|
| >2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii} Length = 333 | Back alignment and structure |
|---|
Score = 460 bits (1185), Expect = e-160
Identities = 95/334 (28%), Positives = 163/334 (48%), Gaps = 8/334 (2%)
Query: 58 KPTVLIAEKLGQAGLDLLNEFANVDCAYNLSPEELCTKISLCDALIVRSGTKVNRDVFES 117
+P V + K+ + L+ L ++A+V+ S EEL I D +IV TK+ R+V E+
Sbjct: 2 RPKVGVLLKMKREALEELKKYADVEIILYPSGEELKGVIGRFDGIIVSPTTKITREVLEN 61
Query: 118 SAGRLKVVGRAGVGIDNVDLAAATEFGCLVVNAPTANTVAAAEHGIALLAAMARNVAQAD 177
A RLKV+ G DN+DL AT+ G V + A AE + L+ + R + AD
Sbjct: 62 -AERLKVISCHSAGYDNIDLEEATKRGIYVTKVSGLLSEAVAEFTVGLIINLMRKIHYAD 120
Query: 178 ASVKAGKWQRNKYVGVS------LVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAP 231
++ G+W+ + + L GK + +LG G +G +ARR G+ + +
Sbjct: 121 KFIRRGEWESHAKIWTGFKRIESLYGKKVGILGMGAIGKAIARRLIPFGVKLYYWSRHRK 180
Query: 232 ADRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGV 291
+ + + + DE + +D + L +PLT T ++N+E K++ G ++N+ RG +
Sbjct: 181 VNVEKELKARYMDIDELLEKSDIVILALPLTRDTYHIINEERVKKLE-GKYLVNIGRGAL 239
Query: 292 IDEEALVRALDSGRVAQAALDVFTEEPPPADSKLVQHERVTVTPHLGASTMEAQEGVAIE 351
+DE+A+ A+ G++ A DVF +EP +TPH +EAQE V
Sbjct: 240 VDEKAVTEAIKQGKLKGYATDVFEKEPVREHELFKYEWETVLTPHYAGLALEAQEDVGFR 299
Query: 352 IAEAVVGALKGELAATAVNAPMVPAEVLTELKPF 385
E ++ L+GE+ VN ++ + +K
Sbjct: 300 AVENLLKVLRGEVPEDLVNKEVLEVRPIENVKML 333
|
| >2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii} Length = 313 | Back alignment and structure |
|---|
Score = 455 bits (1173), Expect = e-158
Identities = 110/306 (35%), Positives = 172/306 (56%), Gaps = 6/306 (1%)
Query: 61 VLIAEKLGQAGLDLLNEFA-NVDCAYNLSPEELCTKISLCDALIVRSGTKVNRDVFESSA 119
LI + + + + L E VD +S EEL I D ++VRS TKV +DV E
Sbjct: 8 ALITDPIDEILIKTLREKGIQVDYMPEISKEELLNIIGNYDIIVVRSRTKVTKDVIEK-G 66
Query: 120 GRLKVVGRAGVGIDNVDLAAATEFGCLVVNAPTANTVAAAEHGIALLAAMARNVAQADAS 179
+LK++ RAG+G+DN+D A + VV AP A+T +A E I L+ A AR + + A
Sbjct: 67 KKLKIIARAGIGLDNIDTEEAEKRNIKVVYAPGASTDSAVELTIGLMIAAARKMYTSMAL 126
Query: 180 VKAGKWQRNKYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPADRARAIG 239
K+G + K G+ L GKT+ ++GFG++G++V A +GM V+A+D ++A I
Sbjct: 127 AKSGIF--KKIEGLELAGKTIGIVGFGRIGTKVGIIANAMGMKVLAYDILDIREKAEKIN 184
Query: 240 VDLVSFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVIDEEALVR 299
VS +E + +D ISLH+ ++ +++ F MK V I+N +R ++ +AL+
Sbjct: 185 AKAVSLEELLKNSDVISLHVTVSKDAKPIIDYPQFELMKDNVIIVNTSRAVAVNGKALLD 244
Query: 300 ALDSGRVAQAALDVFTEEPPPAD--SKLVQHERVTVTPHLGASTMEAQEGVAIEIAEAVV 357
+ G+V A DVF EPP + +L++HERV VT H+GA T EAQ+ VA + ++
Sbjct: 245 YIKKGKVYAYATDVFWNEPPKEEWELELLKHERVIVTTHIGAQTKEAQKRVAEMTTQNLL 304
Query: 358 GALKGE 363
A+K
Sbjct: 305 NAMKEL 310
|
| >1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A* Length = 404 | Back alignment and structure |
|---|
Score = 444 bits (1144), Expect = e-153
Identities = 109/395 (27%), Positives = 180/395 (45%), Gaps = 24/395 (6%)
Query: 57 SKPTVLIAEKLGQAGLDLLNE--FANVDC-AYNLSPEELCTKISLCDALIVRSGTKVNRD 113
K L+ E + Q L+ L + N++ L E+L I + +RS T + D
Sbjct: 3 DKIKFLLVEGVHQKALESLRAAGYTNIEFHKGALDDEQLKESIRDAHFIGLRSRTHLTED 62
Query: 114 VFESSAGRLKVVGRAGVGIDNVDLAAATEFGCLVVNAPTANTVAAAEHGIALLAAMARNV 173
V + A +L +G +G + VDL AA + G V NAP +NT + AE I L + R V
Sbjct: 63 VINA-AEKLVAIGAFAIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRGV 121
Query: 174 AQADASVKAGKWQRNKYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPAD 233
+A+A G + GK L ++G+G +G+++ A+ LGM+V +D
Sbjct: 122 PEANAKAHRGVGNKLAAGSFEARGKKLGIIGYGHIGTQLGILAESLGMYVYFYDIE--NK 179
Query: 234 RARAIGVDLVSFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVID 293
+ + + +D +SLH+P P+T ++ + MK G +IN +RG V+D
Sbjct: 180 LPLGNATQVQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVD 239
Query: 294 EEALVRALDSGRVAQAALDVFTEEPP----PADSKLVQHERVTVTPHLGASTMEAQEGVA 349
AL AL S +A AA+DVF EP P S L + + V +TPH+G ST EAQE +
Sbjct: 240 IPALADALASKHLAGAAIDVFPTEPATNSDPFTSPLAEFDNVLLTPHIGGSTQEAQENIG 299
Query: 350 IEIAEAVVGALKGELAATAVNAPMVPAEVLTELKPFV--------------ELAEKLGRL 395
+E+A ++ +AVN P V + + AE+ +
Sbjct: 300 LEVAGKLIKYSDNGSTLSAVNFPEVSLPLHGGRRLMHIHENRPGVLTALNKIFAEQGVNI 359
Query: 396 AVQLVAGGSGVKTVKVSYASSRAPDDLDTRLLRAM 430
A Q + + + V + + + + ++A+
Sbjct: 360 AAQYLQTSAQMGYVVIDIEADEDVAEKALQAMKAI 394
|
| >1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A* Length = 347 | Back alignment and structure |
|---|
Score = 440 bits (1134), Expect = e-152
Identities = 89/340 (26%), Positives = 156/340 (45%), Gaps = 12/340 (3%)
Query: 43 RLVIIASAAADGISSKPTVLIAEKL-GQAGLDLLNEFANVDCAYNLSPEELCTKI-SLCD 100
+S S P V + + + +L + A V S +E+ K+ +
Sbjct: 6 HHHHHSSGLVPRGSHMPLVALLDGRDCTVEMPILKDVATVAFCDAQSTQEIHEKVLNEAV 65
Query: 101 ALIVRSGTKVNRDVFESSAGRLKVVGRAGVGIDNVDLAAATEFGCLVVNAPTANTVAAAE 160
++ + R+ E L+++ R G G DN+D+ +A + G V N P A+ A+
Sbjct: 66 GALMYHTITLTREDLEK-FKALRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEETAD 124
Query: 161 HGIALLAAMARNVAQADASVKAGKWQRN-------KYVGVSLVGKTLAVLGFGKVGSEVA 213
+ + + R +++ G ++ + G+TL ++G G+VG VA
Sbjct: 125 STLCHILNLYRRATWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVA 184
Query: 214 RRAKGLGMHVIAHDPYAPADRARAIGVDLVS-FDEAIATADFISLHMPLTPATSKVLNDE 272
RAK G +V+ +DPY RA+G+ VS + + +D ++LH L ++ND
Sbjct: 185 LRAKAFGFNVLFYDPYLSDGVERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDF 244
Query: 273 TFGKMKKGVRIINVARGGVIDEEALVRALDSGRVAQAALDVFTEEPPP-ADSKLVQHERV 331
T +M++G ++N ARGG++DE+AL +AL GR+ AALDV EP + L +
Sbjct: 245 TVKQMRQGAFLVNTARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFSQGPLKDAPNL 304
Query: 332 TVTPHLGASTMEAQEGVAIEIAEAVVGALKGELAATAVNA 371
TPH + +A + E A + A+ G + + N
Sbjct: 305 ICTPHAAWYSEQASIEMREEAAREIRRAITGRIPDSLKNC 344
|
| >2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A Length = 364 | Back alignment and structure |
|---|
Score = 410 bits (1057), Expect = e-140
Identities = 84/350 (24%), Positives = 145/350 (41%), Gaps = 22/350 (6%)
Query: 56 SSKPTVLIAEKLGQAGLDLLNEFANVDCAYNLSPEELCTKISLCDALIVRS--GTKVNRD 113
++ + IA L G +L+ L I D +I + ++
Sbjct: 23 CTENKLGIANWLKDQGHELI-----TTSDKEGGNSVLDQHIPDADIIITTPFHPAYITKE 77
Query: 114 VFESSAGRLKVVGRAGVGIDNVDLAAATEFGC--LVVNAPTANTVAAAEHGIALLAAMAR 171
+ A +LK+V AGVG D++DL + G V+ +N V+ AEH + + + R
Sbjct: 78 RIDK-AKKLKLVVVAGVGSDHIDLDYINQTGKKISVLEVTGSNVVSVAEHVVMTMLVLVR 136
Query: 172 NVAQADASVKAGKWQRNKYV--GVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPY 229
N A + W+ + GKT+A +G G++G V R + + Y
Sbjct: 137 NFVPAHEQIINHDWEVAAIAKDAYDIEGKTIATIGAGRIGYRVLERLVPFNPKELLYYDY 196
Query: 230 A--PADRARAIGVDLV-SFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINV 286
P D +G V + +E +A AD ++++ PL T ++N E K KKG ++N
Sbjct: 197 QALPKDAEEKVGARRVENIEELVAQADIVTVNAPLHAGTKGLINKELLSKFKKGAWLVNT 256
Query: 287 ARGGVIDEEALVRALDSGRVAQAALDVFTEEPPPADSKLVQHERVT-----VTPHLGAST 341
ARG + E + AL+SG++ DV+ +P P D +TPH +T
Sbjct: 257 ARGAICVAEDVAAALESGQLRGYGGDVWFPQPAPKDHPWRDMRNKYGAGNAMTPHYSGTT 316
Query: 342 MEAQEGVAIEIAEAVVGALKGELAATAVNAPMVPAEVLTELKPFVELAEK 391
++AQ A + G+ + ++ E T K + + +K
Sbjct: 317 LDAQTRYAQGTVNILESFFTGKFDYRPQDIILLNGEYGT--KAYGKHDKK 364
|
| >3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A Length = 351 | Back alignment and structure |
|---|
Score = 409 bits (1054), Expect = e-140
Identities = 93/351 (26%), Positives = 152/351 (43%), Gaps = 11/351 (3%)
Query: 42 PRLVIIASAAADGISSKPTVLIAEKLGQAGLDLLNEFAN---VDCAYNLSPEELCTKISL 98
++V + A + + P L + D L + V EL I
Sbjct: 3 KKIVGVFYKANEYATKNPNFLGCVENALGIRDWLESQGHQYIVTDDKEGPDCELEKHIPD 62
Query: 99 CDALIVRSG--TKVNRDVFESSAGRLKVVGRAGVGIDNVDLAAATEFGCLVVNAPTANTV 156
LI V + + A LK++ AG+G D++DL AA G V +N V
Sbjct: 63 LHVLISTPFHPAYVTAERIKK-AKNLKLLLTAGIGSDHIDLQAAAAAGLTVAEVTGSNVV 121
Query: 157 AAAEHGIALLAAMARNVAQADASVKAGKWQRN--KYVGVSLVGKTLAVLGFGKVGSEVAR 214
+ AE + + + RN V G+W Y L GKT+ +G G++G + +
Sbjct: 122 SVAEDELMRILILMRNFVPGYNQVVKGEWNVAGIAYRAYDLEGKTIGTVGAGRIGKLLLQ 181
Query: 215 RAKGLGMHVIAHDPYA-PADRARAIGVDLV-SFDEAIATADFISLHMPLTPATSKVLNDE 272
R K G +++ HD + + G V +E + D I ++MPLT T + N E
Sbjct: 182 RLKPFGCNLLYHDRLQMAPELEKETGAKFVEDLNEMLPKCDVIVINMPLTEKTRGMFNKE 241
Query: 273 TFGKMKKGVRIINVARGGVIDEEALVRALDSGRVAQAALDVFTEEPPPADSKLVQHERVT 332
GK+KKGV I+N ARG +++ +A+V A++SG + + DV+ +P P D
Sbjct: 242 LIGKLKKGVLIVNNARGAIMERQAVVDAVESGHIGGYSGDVWDPQPAPKDHPWRYMPNQA 301
Query: 333 VTPHLGASTMEAQEGVAIEIAEAVVGALKGELAATAVNAPMVPAEVLTELK 383
+TPH +T++AQ A + + KGE T + E+ + +
Sbjct: 302 MTPHTSGTTIDAQLRYAAGTKDMLERYFKGEDFPTENY-IVKDGELAPQYR 351
|
| >3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum} Length = 352 | Back alignment and structure |
|---|
Score = 391 bits (1008), Expect = e-133
Identities = 90/341 (26%), Positives = 153/341 (44%), Gaps = 20/341 (5%)
Query: 62 LIAEKLGQAGLDLLNEFANVDCAYNLSPEELCTKISLCDALI-VRSGTKVNRDVFESSAG 120
KL L +E V +L +++ +AL+ +R T+V R + +
Sbjct: 13 DAVRKLDCFSLLQDHEV-KVFNNTVKGVGQLAARVADVEALVLIRERTRVTRQLLDR-LP 70
Query: 121 RLKVVGRAGV----GIDNVDLAAATEFGCLVVNAPTANTVAAAEHGIALLAAMARNVAQA 176
+LK++ + G ++DL A T+ G +V+ + VA AE AL+ A R + Q
Sbjct: 71 KLKIISQTGRVSRDAGGHIDLEACTDKGVVVLEGK-GSPVAPAELTWALVMAAQRRIPQY 129
Query: 177 DASVKAGKWQRNKY----------VGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAH 226
AS+K G WQ++ +G L G+TL + G+GK+G VA + GM+V+
Sbjct: 130 VASLKHGAWQQSGLKSTTMPPNFGIGRVLKGQTLGIFGYGKIGQLVAGYGRAFGMNVLVW 189
Query: 227 DPYAPADRARAIGVDLV-SFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIIN 285
+RARA G + S D +D +S+H+ L T ++ +MK +N
Sbjct: 190 GRENSKERARADGFAVAESKDALFEQSDVLSVHLRLNDETRSIITVADLTRMKPTALFVN 249
Query: 286 VARGGVIDEEALVRALDSGRVAQAALDVFTEEPPPADSKLVQHERVTVTPHLGASTMEAQ 345
+R +++E +V AL+ GR AA+DVF EP L++ E TPH+G E+
Sbjct: 250 TSRAELVEENGMVTALNRGRPGMAAIDVFETEPILQGHTLLRMENCICTPHIGYVERESY 309
Query: 346 EGVAIEIAEAVVGALKGELAATAVNAPMVPAEVLTELKPFV 386
E + ++ L+G + N + ++
Sbjct: 310 EMYFGIAFQNILDILQGN-VDSVANPTALAPALIRAEGHHH 349
|
| >2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa} Length = 380 | Back alignment and structure |
|---|
Score = 392 bits (1008), Expect = e-132
Identities = 81/342 (23%), Positives = 138/342 (40%), Gaps = 31/342 (9%)
Query: 62 LIAEKLGQAGLDLLNEFANVDCAYNLSPEELCTKISLCDALIVRSGTKVNRDVFESSAGR 121
++A++ + ++ ++ D L+VRS T+V+R
Sbjct: 3 ILADENIPVVDAFFADQGSIR--RLPGRAIDRAALAEVDVLLVRSVTEVSRAALA--GSP 58
Query: 122 LKVVGRAGVGIDNVDLAAATEFGCLVVNAPTANTVAAAEHGIALLAAMARNVAQADASVK 181
++ VG +G D++DL E G +AP N ++ + L AMA
Sbjct: 59 VRFVGTCTIGTDHLDLDYFAEAGIAWSSAPGCNARGVVDYVLGCLLAMAE---------- 108
Query: 182 AGKWQRNKYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPADRARAIGVD 241
G L +T V+G G+VG + +GLG V+ DP +AR +
Sbjct: 109 --------VRGADLAERTYGVVGAGQVGGRLVEVLRGLGWKVLVCDPPR---QAREPDGE 157
Query: 242 LVSFDEAIATADFISLHMPLTP----ATSKVLNDETFGKMKKGVRIINVARGGVIDEEAL 297
VS + +A AD ISLH PL T +L++ ++ G ++N +RG V+D +AL
Sbjct: 158 FVSLERLLAEADVISLHTPLNRDGEHPTRHLLDEPRLAALRPGTWLVNASRGAVVDNQAL 217
Query: 298 VRALDSGRVAQAALDVFTEEPPPADSKLVQHERVTVTPHLGASTMEAQEGVAIEIAEAVV 357
R L+ G + ALDV+ EP + + TPH+ ++E + +I +A
Sbjct: 218 RRLLEGGADLEVALDVWEGEPQA--DPELAARCLIATPHIAGYSLEGKLRGTAQIYQAYC 275
Query: 358 GALKGELAATAVNAPMVPAEVLTELKPFVELAEKLGRLAVQL 399
+ + +L P + A L L +
Sbjct: 276 AWRGIAERVSLQDVLPETWLAGLQLNPGCDPAWALATLCRAV 317
|
| >2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A Length = 393 | Back alignment and structure |
|---|
Score = 387 bits (996), Expect = e-130
Identities = 83/344 (24%), Positives = 141/344 (40%), Gaps = 13/344 (3%)
Query: 48 ASAAADGISSKPTVLIAEKLGQAGLDLLNEFAN----VDCAYNLSPEELCTKISLCDALI 103
I P L+ G+ GL E V + ++ D +I
Sbjct: 35 TLPTPKAIDFTPGQLLGSVSGELGLRKYLESNGHTLVVTSDKDGPDSVFERELVDADVVI 94
Query: 104 VRSG--TKVNRDVFESSAGRLKVVGRAGVGIDNVDLAAATEFGCLVVNAPTANTVAAAEH 161
+ + + A LK+ AG+G D+VDL +A + V N+++ AEH
Sbjct: 95 SQPFWPAYLTPERIAK-AKNLKLALTAGIGSDHVDLQSAIDRNVTVAEVTYCNSISVAEH 153
Query: 162 GIALLAAMARNVAQADASVKAGKWQRNKYV--GVSLVGKTLAVLGFGKVGSEVARRAKGL 219
+ ++ ++ RN + + G W V L + + G++G V RR
Sbjct: 154 VVMMILSLVRNYLPSHEWARKGGWNIADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAPF 213
Query: 220 GMHVIAHDPY-APADRARAIGVDL-VSFDEAIATADFISLHMPLTPATSKVLNDETFGKM 277
+H+ D + P + + + + ++ D ++L+ PL P T ++NDET
Sbjct: 214 DVHLHYTDRHRLPESVEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMINDETLKLF 273
Query: 278 KKGVRIINVARGGVIDEEALVRALDSGRVAQAALDVFTEEPPPADSKLVQHERVTVTPHL 337
K+G I+N ARG + D +A+ RAL+SGR+A A DV+ +P P D +TPH+
Sbjct: 274 KRGAYIVNTARGKLCDRDAVARALESGRLAGYAGDVWFPQPAPKDHPWRTMPYNGMTPHI 333
Query: 338 GASTMEAQEGVAIEIAEAVVGALKGELAATAVNAPMVPAEVLTE 381
+T+ AQ A E + +G +V L
Sbjct: 334 SGTTLTAQARYAAGTREILECFFEGRPIRDEYL--IVQGGALAG 375
|
| >3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum} Length = 290 | Back alignment and structure |
|---|
Score = 379 bits (976), Expect = e-129
Identities = 75/279 (26%), Positives = 128/279 (45%), Gaps = 15/279 (5%)
Query: 90 EELCTKISLCDALIVR----SGTKVNRDVFESSAGRLKVVGRAGVGIDNVDLAAATEFGC 145
E T + D + +V +D + R K++ G+D++D+ E
Sbjct: 15 EIAKTVLDGFDLHWYPDYYDAEAQVIKDRYVL-GKRTKMIQAISAGVDHIDVNGIPENVV 73
Query: 146 LVVNAPTANTVAAAEHGIALLAAMARNVAQADASVKAGKWQRNKYVGVSLVGKTLAVLGF 205
L NA A +++ AEH ALL A A+N+ + + +KAG ++++ L GK L +LG+
Sbjct: 74 LCSNAG-AYSISVAEHAFALLLAHAKNILENNELMKAGIFRQSP--TTLLYGKALGILGY 130
Query: 206 GKVGSEVARRAKGLGMHVIAHDPYAPADRARAIGVDLVSFDEAIATADFISLHMPLTPAT 265
G +G VA AK GM VIA+ + + V S + +DF+ + +PLT T
Sbjct: 131 GGIGRRVAHLAKAFGMRVIAYTRSSVDQN---VDVISESPADLFRQSDFVLIAIPLTDKT 187
Query: 266 SKVLNDETFGKMKKGVRIINVARGGVIDEEALVRALDSGRVAQAALDVFTEEPPPADSKL 325
++N +K + I+NVAR V+ + ++ L DV+ EP ++ L
Sbjct: 188 RGMVNSRLLANARKNLTIVNVARADVVSKPDMIGFLKERSDVWYLSDVWWNEPEITETNL 247
Query: 326 VQHERVTVTPHLGASTMEAQEGVAIEIA-EAVVGALKGE 363
++PH+ +AI++A E V +GE
Sbjct: 248 ---RNAILSPHVAGGMSGEIMDIAIQLAFENVRNFFEGE 283
|
| >3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp} Length = 381 | Back alignment and structure |
|---|
Score = 373 bits (959), Expect = e-125
Identities = 86/349 (24%), Positives = 143/349 (40%), Gaps = 34/349 (9%)
Query: 56 SSKPTVLIAEKLGQAGLDLLNEFANVDCAYNLSPEELCTKISLCDALIVRSGTKVNRDVF 115
S+ +L+ E + +L + V +++ DAL+VRS TKVN +
Sbjct: 1 SNAMKILVDENM-PYARELFSRLGEVK--AVPGRPIPVEELNHADALMVRSVTKVNESLL 57
Query: 116 ESSAGRLKVVGRAGVGIDNVDLAAATEFGCLVVNAPTANTVAAAEHGIALLAAMARNVAQ 175
+ VG A G D+VD A + G AP N +A E+ + L +A
Sbjct: 58 S--GTPINFVGTATAGTDHVDEAWLKQAGIGFSAAPGCNAIAVVEYVFSALLMLAERD-- 113
Query: 176 ADASVKAGKWQRNKYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPADRA 235
G SL +T+ ++G G VGS + R + LG+ + DP A
Sbjct: 114 ----------------GFSLRDRTIGIVGVGNVGSRLQTRLEALGIRTLLCDPPR---AA 154
Query: 236 RAIGVDLVSFDEAIATADFISLHMPLTP----ATSKVLNDETFGKMKKGVRIINVARGGV 291
R D + DE + AD ++ H PL T + ++ ++K G +IN RG V
Sbjct: 155 RGDEGDFRTLDELVQEADVLTFHTPLYKDGPYKTLHLADETLIRRLKPGAILINACRGPV 214
Query: 292 IDEEALVRALDSGRVAQAALDVFTEEPPPADSKLVQHERVTVTPHLGASTMEAQEGVAIE 351
+D AL+ L++G+ LDV+ EP + L++ + T H+ T+E + +
Sbjct: 215 VDNAALLARLNAGQPLSVVLDVWEGEPDL-NVALLEAVDI-GTSHIAGYTLEGKARGTTQ 272
Query: 352 IAEAVVGALKGELAATAVNAPMVPAEVLTELKPFVELAEKLGRLAVQLV 400
+ EA + E ++PA + L + + LV
Sbjct: 273 VFEAYSAFIGREQRVALET--LLPAPEFGRITLHGPLDQPTLKRLAHLV 319
|
| >4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A* Length = 330 | Back alignment and structure |
|---|
Score = 364 bits (938), Expect = e-123
Identities = 94/328 (28%), Positives = 157/328 (47%), Gaps = 14/328 (4%)
Query: 58 KPTVLIAEKLGQAGLDLLNEFANVDC---AYNLSPEELCTKISLCDALIVRSGTKVNRDV 114
P ++I ++ + L LL + L+ EE+ + A++ +V+ D
Sbjct: 2 LPKLVITHRVHEEILQLLAPHCELITNQTDSTLTREEILRRCRDAQAMMAFMPDRVDADF 61
Query: 115 FESSAGRLKVVGRAGVGIDNVDLAAATEFGCLVVNAPTANTVAAAEHGIALLAAMARNVA 174
++ L+V+G A G DN D+ A T G + P TV AE I L + R++
Sbjct: 62 LQA-CPELRVIGCALKGFDNFDVDACTARGVWLTFVPDLLTVPTAELAIGLAVGLGRHLR 120
Query: 175 QADASVKAGKWQ--RNKYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYA-P 231
ADA V++GK++ + ++ G L T+ LG G +G +A R +G G + H+ A
Sbjct: 121 AADAFVRSGKFRGWQPRFYGTGLDNATVGFLGMGAIGLAMADRLQGWGATLQYHEAKALD 180
Query: 232 ADRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGV 291
+ +G+ V+ E A++DFI L +PL T ++N E ++ G ++N RG V
Sbjct: 181 TQTEQRLGLRQVACSELFASSDFILLALPLNADTLHLVNAELLALVRPGALLVNPCRGSV 240
Query: 292 IDEEALVRALDSGRVAQAALDVFTEE-------PPPADSKLVQHERVTVTPHLGASTMEA 344
+DE A++ AL+ G++ A DVF E P D L+ H TPH+G++
Sbjct: 241 VDEAAVLAALERGQLGGYAADVFEMEDWARADRPQQIDPALLAHPNTLFTPHIGSAVRAV 300
Query: 345 QEGVAIEIAEAVVGALKGELAATAVNAP 372
+ + A+ ++ AL GE AVN
Sbjct: 301 RLEIERCAAQNILQALAGERPINAVNRL 328
|
| >2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A* Length = 334 | Back alignment and structure |
|---|
Score = 351 bits (902), Expect = e-117
Identities = 113/340 (33%), Positives = 191/340 (56%), Gaps = 17/340 (5%)
Query: 58 KPTVLIAEKLGQAGLDLLNEFANVDC---AYNLSPEELCTKISLCDALIVRSGTKVNRDV 114
KP V I ++ + G+ +L + V+ + E L K+ DAL+ +++++V
Sbjct: 2 KPKVFITREIPEVGIKMLEDEFEVEVWGDEKEIPREILLKKVKEVDALVTMLSERIDKEV 61
Query: 115 FESSAGRLKVVGRAGVGIDNVDLAAATEFGCLVVNAPTANTVAAAEHGIALLAAMARNVA 174
FE+ A +L++V VG DN+D+ AT+ G V N P T A A+ ALL A AR+V
Sbjct: 62 FEN-APKLRIVANYAVGYDNIDIEEATKRGIYVTNTPDVLTDATADLAFALLLATARHVV 120
Query: 175 QADASVKAGKWQRNK-------YVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHD 227
+ D V++G+W++ ++G + GKT+ ++G G++G +A+RAKG M ++ +
Sbjct: 121 KGDRFVRSGEWKKRGVAWHPKWFLGYDVYGKTIGIIGLGRIGQAIAKRAKGFNMRILYYS 180
Query: 228 PYAPADRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVA 287
+ R + + ++ + +DF+ L +PLT T ++N+E MKK +IN+A
Sbjct: 181 RTRKEEVERELNAEFKPLEDLLRESDFVVLAVPLTRETYHLINEERLKLMKKTAILINIA 240
Query: 288 RGGVIDEEALVRALDSGRVAQAALDVFTEEPPPADSKLVQHERVTVTPHLGASTMEAQEG 347
RG V+D ALV+AL G +A A LDVF EEP + +L + + V +TPH+G+++ A+EG
Sbjct: 241 RGKVVDTNALVKALKEGWIAGAGLDVFEEEPYY-NEELFKLDNVVLTPHIGSASFGAREG 299
Query: 348 VAIEIAEAVVGALKGELAATAVNAPMVPAEVLTELKPFVE 387
+A +A+ ++ +GE+ T VN EV+ KP E
Sbjct: 300 MAELVAKNLIAFKRGEIPPTLVN-----REVIKIRKPGFE 334
|
| >1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1 Length = 333 | Back alignment and structure |
|---|
Score = 336 bits (864), Expect = e-111
Identities = 79/307 (25%), Positives = 134/307 (43%), Gaps = 17/307 (5%)
Query: 81 VDCAYNLSPEELCTKISLCDALIVRSGTKVNRDVFES-SAGRLKVVGRAGVGIDNVDLAA 139
++ E D + T VFE A +K + VG DN+D+ A
Sbjct: 27 LEYHTEFLDENTVEWAKGFDGINSLQTTPYAAGVFEKMHAYGIKFLTIRNVGTDNIDMTA 86
Query: 140 ATEFGCLVVNAPTANTVAAAEHGIALLAAMARNVAQADASVKAGKWQRN-KYVGVSLVGK 198
++G + N P + A AE + + RN+ + A ++AG +++ ++G L +
Sbjct: 87 MKQYGIRLSNVPAYSPAAIAEFALTDTLYLLRNMGKVQAQLQAGDYEKAGTFIGKELGQQ 146
Query: 199 TLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPADRARAIGVDLVSFDEAIATADFISLH 258
T+ V+G G +G + KG G VIA+DPY + D VS ++ +D I LH
Sbjct: 147 TVGVMGTGHIGQVAIKLFKGFGAKVIAYDPYP--MKGDHPDFDYVSLEDLFKQSDVIDLH 204
Query: 259 MPLTPATSKVLNDETFGKMKKGVRIINVARGGVIDEEALVRALDSGRVAQAALDVFTEEP 318
+P + ++N+ F MK G +IN AR +ID +A++ L SG++A +D + E
Sbjct: 205 VPGIEQNTHIINEAAFNLMKPGAIVINTARPNLIDTQAMLSNLKSGKLAGVGIDTYEYET 264
Query: 319 P-------------PADSKLVQHERVTVTPHLGASTMEAQEGVAIEIAEAVVGALKGELA 365
P +L+ V ++PH+ T A + + +V L
Sbjct: 265 EDLLNLAKHGSFKDPLWDELLGMPNVVLSPHIAYYTETAVHNMVYFSLQHLVDFLTKGET 324
Query: 366 ATAVNAP 372
+T V P
Sbjct: 325 STEVTGP 331
|
| >1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A* Length = 333 | Back alignment and structure |
|---|
Score = 334 bits (860), Expect = e-111
Identities = 80/304 (26%), Positives = 134/304 (44%), Gaps = 15/304 (4%)
Query: 81 VDCAYNLSPEELCTKISLCDALIVRSGTKVNRDVFES-SAGRLKVVGRAGVGIDNVDLAA 139
V+ L E D ++V + ++ + + + VG+DN+D+A
Sbjct: 29 VEYTDKLLTPETVALAKGADGVVVYQQLDYIAETLQALADNGITKMSLRNVGVDNIDMAK 88
Query: 140 ATEFGCLVVNAPTANTVAAAEHGIALLAAMARNVAQADASVKAGKWQRNKYVGVSLVGKT 199
A E G + N P + A AEH A + R D V + +G + +
Sbjct: 89 AKELGFQITNVPVYSPNAIAEHAAIQAARILRQDKAMDEKVARHDLRWAPTIGREVRDQV 148
Query: 200 LAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPADRARAIGVDLVSFDEAIATADFISLHM 259
+ V+G G +G + +G G VI +D + G + S D+ AD ISLH+
Sbjct: 149 VGVVGTGHIGQVFMQIMEGFGAKVITYDIF-RNPELEKKGYYVDSLDDLYKQADVISLHV 207
Query: 260 PLTPATSKVLNDETFGKMKKGVRIINVARGGVIDEEALVRALDSGRVAQAALDVFTEEPP 319
P PA ++NDE+ KMK+ V I+NV+RG ++D +A++R LDSG++ A+DV+ E
Sbjct: 208 PDVPANVHMINDESIAKMKQDVVIVNVSRGPLVDTDAVIRGLDSGKIFGYAMDVYEGEVG 267
Query: 320 -------------PADSKLVQHERVTVTPHLGASTMEAQEGVAIEIAEAVVGALKGELAA 366
+ L+ V VTP T A + ++ + + ++G+ A
Sbjct: 268 IFNEDWEGKEFPDARLADLIARPNVLVTPKTAFYTTHAVRNMVVKAFDNNLELVEGKEAE 327
Query: 367 TAVN 370
T V
Sbjct: 328 TPVK 331
|
| >1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans} Length = 331 | Back alignment and structure |
|---|
Score = 322 bits (827), Expect = e-106
Identities = 70/320 (21%), Positives = 130/320 (40%), Gaps = 21/320 (6%)
Query: 69 QAGLDLLNEFANVDCAY---NLSPEELCTKISLCDALIVRSGTKVNRDVFES-SAGRLKV 124
+ N+ D L+ +E + DA+I+R N+ + +K
Sbjct: 13 LPIFEACNKEFGYDIKCVPDYLNTKETAEMAAGFDAVILRGNCFANKQNLDIYKKLGVKY 72
Query: 125 VGRAGVGIDNVDLAAATEFGCLVVNAPTANTVAAAEHGIALLAAMARNVAQADASVKAGK 184
+ G D++D A E G + P + A AE + + R+ A +
Sbjct: 73 ILTRTAGTDHIDKEYAKELGFPMAFVPRYSPNAIAELAVTQAMMLLRHTAYTTSRTAKKN 132
Query: 185 WQRNKY-VGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPADRARAIGVDLV 243
++ + + + T+ V+G G++G A+ G+G VI D + + V
Sbjct: 133 FKVDAFMFSKEVRNCTVGVVGLGRIGRVAAQIFHGMGATVIGEDVFE--IKGIEDYCTQV 190
Query: 244 SFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVIDEEALVRALDS 303
S DE + +D I++H P V+ + KMK G ++N ARG ++D EA++ A++S
Sbjct: 191 SLDEVLEKSDIITIHAPYIKENGAVVTRDFLKKMKDGAILVNCARGQLVDTEAVIEAVES 250
Query: 304 GRVAQAALDVFTEEPP---------PADSKLVQ-----HERVTVTPHLGASTMEAQEGVA 349
G++ DV E ++ L + + RV +TPHLG+ T EA + +
Sbjct: 251 GKLGGYGCDVLDGEASVFGKDLEGQKLENPLFEKLVDLYPRVLITPHLGSYTDEAVKNMV 310
Query: 350 IEIAEAVVGALKGELAATAV 369
+ + + +
Sbjct: 311 EVSYQNLKDLAETGDCPNKI 330
|
| >1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1 Length = 320 | Back alignment and structure |
|---|
Score = 313 bits (804), Expect = e-103
Identities = 90/320 (28%), Positives = 151/320 (47%), Gaps = 9/320 (2%)
Query: 58 KPTVLIAEKLGQAGLDLLNEFANVDCAYN---LSPEELCTKISLCDALIVRSGTKVNRDV 114
K +LI L +A + E +V + ++ +E+ DAL++ K ++V
Sbjct: 1 KKKILITWPLPEAAMARARESYDVIAHGDDPKITIDEMIETAKSVDALLITLNEKCRKEV 60
Query: 115 FESSAGRLKVVGRAGVGIDNVDLAAATEFGCLVVNAPTANTVAAAEHGIALLAAMARNVA 174
+ +K + +G D++DL A G V NAP TVA AE + LL AR
Sbjct: 61 IDRIPENIKCISTYSIGFDHIDLDACKARGIKVGNAPHGVTVATAEIAMLLLLGSARRAG 120
Query: 175 QADASVKAGKWQR---NKYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPY-- 229
+ + ++ W + VG L KTL + GFG +G +A+RA+G M + D +
Sbjct: 121 EGEKMIRTRSWPGWEPLELVGEKLDNKTLGIYGFGSIGQALAKRAQGFDMDIDYFDTHRA 180
Query: 230 APADRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARG 289
+ +D A S D ++ + F SL+ P TP T N T + +G ++N ARG
Sbjct: 181 SSSDEASYQATFHDSLDSLLSVSQFFSLNAPSTPETRYFFNKATIKSLPQGAIVVNTARG 240
Query: 290 GVIDEEALVRALDSGRVAQAALDVFTEEPPPADSKLVQHERVTVTPHLGASTMEAQEGVA 349
++D E +V AL++GR+A A DVF EP + + PH+G++ +A+E +A
Sbjct: 241 DLVDNELVVAALEAGRLAYAGFDVFAGEPNI-NEGYYDLPNTFLFPHIGSAATQAREDMA 299
Query: 350 IEIAEAVVGALKGELAATAV 369
+ + + G + A+
Sbjct: 300 HQANDLIDALFGGADMSYAL 319
|
| >2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus} Length = 311 | Back alignment and structure |
|---|
Score = 312 bits (803), Expect = e-103
Identities = 106/315 (33%), Positives = 156/315 (49%), Gaps = 13/315 (4%)
Query: 61 VLIAEKLGQAGLDLLNEFANVDCAYN---LSPEELCTKISLCDALIVRSGTKVNRDVFES 117
VL+ L LD L E + L EL ++ LI +++ +V +
Sbjct: 3 VLVTRTLPGKALDRLRERGLEVEVHRGLFLPKAELLKRVEGAVGLIPTVEDRIDAEVMDR 62
Query: 118 SAGRLKVVGRAGVGIDNVDLAAATEFGCLVVNAPTANTVAAAEHGIALLAAMARNVAQAD 177
A LKV+ VG+D+VDL AA E G V + P T A A+ +ALL A+AR V +
Sbjct: 63 -AKGLKVIACYSVGVDHVDLEAARERGIRVTHTPGVLTEATADLTLALLLAVARRVVEGA 121
Query: 178 ASVKAGKWQRNK---YVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPADR 234
A + G W+ +G+ L G TL ++G G++G VA+RA GM V+ H
Sbjct: 122 AYARDGLWKAWHPELLLGLDLQGLTLGLVGMGRIGQAVAKRALAFGMRVVYHAR-----T 176
Query: 235 ARAIGVDLVSFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVIDE 294
+ + +S +E + AD +SLH PLTP T ++LN E MK+G ++N ARG ++D
Sbjct: 177 PKPLPYPFLSLEELLKEADVVSLHTPLTPETHRLLNRERLFAMKRGAILLNTARGALVDT 236
Query: 295 EALVRALDSGRVAQAALDVFTEEPPPADSKLVQHERVTVTPHLGASTMEAQEGVAIEIAE 354
EALV AL G + A LDV EP P L +TPH+G++ +E +A E
Sbjct: 237 EALVEAL-RGHLFGAGLDVTDPEPLPPGHPLYALPNAVITPHIGSAGRTTRERMAEVAVE 295
Query: 355 AVVGALKGELAATAV 369
++ L+G V
Sbjct: 296 NLLAVLEGREPPNPV 310
|
| >1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1 Length = 303 | Back alignment and structure |
|---|
Score = 307 bits (788), Expect = e-100
Identities = 57/313 (18%), Positives = 109/313 (34%), Gaps = 22/313 (7%)
Query: 61 VLIAEKLGQAGLDLLNEFANVDCAYNLSPEELCTKISLCDALIVRSGTKVNRDVFESSAG 120
+ + +L + L ++ + + +A +V +++ +
Sbjct: 3 LYVNFELPPEAEEELRKYFKI---------VRGGDLGNVEAALV---SRITAEELAK-MP 49
Query: 121 RLKVVGRAGVGIDNVDLAAATEFGCLVVNAPTANTVAAAEHGIALLAAMARNVAQADASV 180
RLK + G+D++ + V +N A AE +ALL A + + Q +
Sbjct: 50 RLKFIQVVTAGLDHLPWESIPP-HVTVAGNAGSNADAVAEFALALLLAPYKRIIQYGEKM 108
Query: 181 KAGKWQRNKYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPADRARAIGV 240
K G + R + G+ +AVLG G++G+ V + LG V
Sbjct: 109 KRGDYGR-DVEIPLIQGEKVAVLGLGEIGTRVGKILAALGAQVRGFSRT----PKEGPWR 163
Query: 241 DLVSFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVIDEEALVRA 300
S +EA+ A +PL T ++ + M + +NV R V+D + ++R
Sbjct: 164 FTNSLEEALREARAAVCALPLNKHTRGLVKYQHLALMAEDAVFVNVGRAEVLDRDGVLRI 223
Query: 301 LDSGRVAQAALDVFT-EEPPPADSKLVQHERVTVTPHLGASTM--EAQEGVAIEIAEAVV 357
L A DV+ D++ V TP + + +E ++
Sbjct: 224 LKERPQFIFASDVWWGRNDFAKDAEFFSLPNVVATPWVAGGYGNERVWRQMVMEAVRNLI 283
Query: 358 GALKGELAATAVN 370
G
Sbjct: 284 TYATGGRPRNIAK 296
|
| >2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A Length = 330 | Back alignment and structure |
|---|
Score = 304 bits (781), Expect = 2e-99
Identities = 88/324 (27%), Positives = 153/324 (47%), Gaps = 9/324 (2%)
Query: 56 SSKPTVLIAEKLGQAGLDLLNEFANVDCAYN-----LSPEELCTKISLCDALIVRSGTKV 110
V + ++ G L A+ + + +EL ++ L+ V
Sbjct: 6 VRLMKVFVTRRIPAEGRVALARAADCEVEQWDSDEPIPAKELERGVAGAHGLLCLLSDHV 65
Query: 111 NRDVFESSAGRLKVVGRAGVGIDNVDLAAATEFGCLVVNAPTANTVAAAEHGIALLAAMA 170
++ + +++ LKV+ VGID++ L + G V P T AE ++LL
Sbjct: 66 DKRILDAAGANLKVISTMSVGIDHLALDEIKKRGIRVGYTPDVLTDTTAELAVSLLLTTC 125
Query: 171 RNVAQADASVKAGKWQRNK---YVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHD 227
R + +A VK G W K G L T+ ++G G++G +ARR K G+ +
Sbjct: 126 RRLPEAIEEVKNGGWTSWKPLWLCGYGLTQSTVGIIGLGRIGQAIARRLKPFGVQRFLYT 185
Query: 228 PYAP-ADRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINV 286
P + A + VS E A +DFI + LTPAT + N + F KMK+ IN+
Sbjct: 186 GRQPRPEEAAEFQAEFVSTPELAAQSDFIVVACSLTPATEGLCNKDFFQKMKETAVFINI 245
Query: 287 ARGGVIDEEALVRALDSGRVAQAALDVFTEEPPPADSKLVQHERVTVTPHLGASTMEAQE 346
+RG V++++ L +AL SG++A A LDV + EP P + L+ + + PH+G++T +
Sbjct: 246 SRGDVVNQDDLYQALASGKIAAAGLDVTSPEPLPTNHPLLTLKNCVILPHIGSATHRTRN 305
Query: 347 GVAIEIAEAVVGALKGELAATAVN 370
+++ A ++ L+GE + +
Sbjct: 306 TMSLLAANNLLAGLRGEPMPSELK 329
|
| >2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B Length = 348 | Back alignment and structure |
|---|
Score = 285 bits (731), Expect = 1e-91
Identities = 85/345 (24%), Positives = 146/345 (42%), Gaps = 26/345 (7%)
Query: 57 SKPTVLIA---EKLGQAGLDLLNEFANVDCAYNLSPEELCT-----KISLCDALIVRSGT 108
+P VL+ + + V A + + + +A+I +
Sbjct: 2 PRPRVLLLGDPARHLDDLWSDFQQKFEVIPANLTTHDGFKQALREKRYGDFEAIIKLAVE 61
Query: 109 ------KVNRDVFESSAGRLKVVGRAGVGIDNVDLAAATEFGCLVVNAPTANTVAAAEHG 162
N D+ LKV AG G D +DL A E G N+ A A ++
Sbjct: 62 NGTESYPWNADLISHLPSSLKVFAAAGAGFDWLDLDALNERGVAFANSRGAGDTATSDLA 121
Query: 163 IALLAAMARNVAQADASVKAGKWQR-------NKYVGVSLVGKTLAVLGFGKVGSEVARR 215
+ L+ ++ R + ++ + + G + + G L +G G + E+AR+
Sbjct: 122 LYLILSVFRLASYSERAARTGDPETFNRVHLEIGKSAHNPRGHVLGAVGLGAIQKEIARK 181
Query: 216 A-KGLGMHVIAHDPY-APADRARAIGVDLV-SFDEAIATADFISLHMPLTPATSKVLNDE 272
A GLGM ++ +D A A+ +A+G + V S +E +D +S+ +P T ++++
Sbjct: 182 AVHGLGMKLVYYDVAPADAETEKALGAERVDSLEELARRSDCVSVSVPYMKLTHHLIDEA 241
Query: 273 TFGKMKKGVRIINVARGGVIDEEALVRALDSGRVAQAALDVFTEEPPPADSKLVQHERVT 332
F MK G RI+N ARG VI ++AL+ AL SG++ A LDV EP +L++ + VT
Sbjct: 242 FFAAMKPGSRIVNTARGPVISQDALIAALKSGKLLSAGLDVHEFEPQV-SKELIEMKHVT 300
Query: 333 VTPHLGASTMEAQEGVAIEIAEAVVGALKGELAA-TAVNAPMVPA 376
+T H+G +E + L T P+
Sbjct: 301 LTTHIGGVAIETFHEFERLTMTNIDRFLLQGKPLLTPAGKVFAPS 345
|
| >4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP} Length = 345 | Back alignment and structure |
|---|
Score = 282 bits (725), Expect = 8e-91
Identities = 73/320 (22%), Positives = 147/320 (45%), Gaps = 7/320 (2%)
Query: 57 SKPTVLIAEKLGQAGLDLLNEFANVDCAYN---LSPEELCTKISLCDALIVRSGTKVNRD 113
+ + A L + +++ L+P + ++ + L V + + +
Sbjct: 27 PIQKAFLCRRFTPAIEAELRQRFDLEVNLEDTVLTPSGIASRAHGAEVLFVTATEAITAE 86
Query: 114 VFESSAGRLKVVGRAGVGIDNVDLAAATEFGCLVVNAPTANTVAAAEHGIALLAAMARNV 173
V LK + VG D++D+AAA G V++ P + A AE + L+ R
Sbjct: 87 VIRKLQPGLKTIATLSVGYDHIDMAAARSLGIKVLHTPDVLSDACAEIAMLLVLNACRRG 146
Query: 174 AQADASVKAGKWQRNK---YVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYA 230
+AD V++G W +G+ L G+ L + G G++G +A RA+G G+ + H+
Sbjct: 147 YEADRMVRSGSWPGWGPTQLLGMGLTGRRLGIFGMGRIGRAIATRARGFGLAIHYHNRTR 206
Query: 231 PADRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGG 290
+ + + D + +D + P P L+ + K+ +G +IN++RG
Sbjct: 207 LSHALEEGAIYHDTLDSLLGASDIFLIAAPGRPELKGFLDHDRIAKIPEGAVVINISRGD 266
Query: 291 VIDEEALVRALDSGRVAQAALDVFTEEPPPADSKLVQHERVTVTPHLGASTMEAQEGVAI 350
+I+++AL+ AL S + A LDVF EP D + + + +TPH+G++T E ++ +
Sbjct: 267 LINDDALIEALRSKHLFAAGLDVFANEPAI-DPRYRSLDNIFLTPHIGSATHETRDAMGW 325
Query: 351 EIAEAVVGALKGELAATAVN 370
+ + + + ++ ++
Sbjct: 326 LLIQGIEALNQSDVPDNLIS 345
|
| >3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum} Length = 324 | Back alignment and structure |
|---|
Score = 277 bits (711), Expect = 5e-89
Identities = 81/311 (26%), Positives = 132/311 (42%), Gaps = 4/311 (1%)
Query: 61 VLIAEKLGQAGLDLLNEFANVDCAYNLSPEELCTKISLCDALIVRSGTKVNRDVFESSAG 120
VL+A+ L L D + + + + + +
Sbjct: 4 VLMAQATKPEQLQQLQTTY-PDWTFKDAAAVTAADYDQIEVMYGNHPLL--KTILARPTN 60
Query: 121 RLKVVGRAGVGIDNVDLAAATEFGCLVVNAPTANTVAAAEHGIALLAAMARNVAQADASV 180
+LK V G+D + L A G +V N + A +E +A + ++ R A +
Sbjct: 61 QLKFVQVISAGVDYLPLKALQAAGVVVANTSGIHADAISESVLAAMLSVVRGYHAAWLNQ 120
Query: 181 KAGKWQRNKYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPADRARAIGV 240
+ + +L G+ L + G G++G +A +A LGMHVI + V
Sbjct: 121 RGARQWALPMTTSTLTGQQLLIYGTGQIGQSLAAKASALGMHVIGVNTTGHPADHFHETV 180
Query: 241 DLVSFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVIDEEALVRA 300
+ +A+ATA+FI +PLTP T + + E F + K+ +IN+ RG +D AL+ A
Sbjct: 181 AFTATADALATANFIVNALPLTPTTHHLFSTELFQQTKQQPMLINIGRGPAVDTTALMTA 240
Query: 301 LDSGRVAQAALDVFTEEPPPADSKLVQHERVTVTPHLGASTMEAQEGVAIEIAEAVVGAL 360
LD +++ AALDV EP P D L Q + V +TPH+ + V A +
Sbjct: 241 LDHHQLSMAALDVTEPEPLPTDHPLWQRDDVLITPHISGQIAHFRATVFPIFAANFAQFV 300
Query: 361 K-GELAATAVN 370
K G L V+
Sbjct: 301 KDGTLVRNQVD 311
|
| >4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti} Length = 340 | Back alignment and structure |
|---|
Score = 254 bits (652), Expect = 5e-80
Identities = 92/321 (28%), Positives = 145/321 (45%), Gaps = 14/321 (4%)
Query: 56 SSKPTVLIAEKLGQAGLDLLNEFANVDCAYN-LSPEELCTKISLCDALIVRSGTKVNRDV 114
+ KP +L+ E + +D L +V Y L + A+ G ++ +
Sbjct: 28 NVKPDLLLVEPMMPFVMDELQRNYSVHRLYQAADRPALEAALPSIRAVATGGGAGLSNEW 87
Query: 115 FESSAGRLKVVGRAGVGIDNVDLAAATEFGCLVVNAPTANTVAAAEHGIALLAAMARNVA 174
E L ++ GVG D VDLA A V P A+ GIAL+ A+ R V
Sbjct: 88 MEK-LPSLGIIAINGVGTDKVDLARARRRNIDVTTTPGVLADDVADLGIALMLAVLRRVG 146
Query: 175 QADASVKAGKWQRNKY--VGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPA 232
D V+ G+W + +G S GK + VLG G++G +A RA+ GM V +
Sbjct: 147 DGDRLVREGRWAAGEQLPLGHSPKGKRIGVLGLGQIGRALASRAEAFGMSVRYWN----- 201
Query: 233 DRARAIGVD---LVSFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARG 289
R+ GVD S + +D +++ + + AT +++ + ++NVARG
Sbjct: 202 -RSTLSGVDWIAHQSPVDLARDSDVLAVCVAASAATQNIVDASLLQALGPEGIVVNVARG 260
Query: 290 GVIDEEALVRALDSGRVAQAALDVFTEEPPPADSKLVQHERVTVTPHLGASTMEAQEGVA 349
V+DE+AL+ AL SG +A A LDVF EP S+ + PH G++T+E + +
Sbjct: 261 NVVDEDALIEALKSGTIAGAGLDVFVNEPAI-RSEFHTTPNTVLMPHQGSATVETRMAMG 319
Query: 350 IEIAEAVVGALKGELAATAVN 370
+ + GE A VN
Sbjct: 320 KLVLANLAAHFAGEKAPNTVN 340
|
| >3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A* Length = 333 | Back alignment and structure |
|---|
Score = 250 bits (641), Expect = 2e-78
Identities = 79/316 (25%), Positives = 138/316 (43%), Gaps = 8/316 (2%)
Query: 57 SKPTVLIAEKLGQAGLDLLNEFANVDCAYN--LSPEELCTKISLCDALIVRSGTKVNRDV 114
VL+ + L++ + + + L + A++ S + ++
Sbjct: 22 EAIGVLMMCPMSTYLEQELDKRFKLFRYWTQPAQRDFLALQAESIRAVVGNSNAGADAEL 81
Query: 115 FESSAGRLKVVGRAGVGIDNVDLAAATEFGCLVVNAPTANTVAAAEHGIALLAAMARNVA 174
++ +L++V VG+D VDL E G V N P T A+ I L+ A+ R +
Sbjct: 82 IDA-LPKLEIVSSFSVGLDKVDLIKCEEKGVRVTNTPDVLTDDVADLAIGLILAVLRRIC 140
Query: 175 QADASVKAGKWQRNKY-VGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPAD 233
+ D V+ G W+ + + GK + ++G G++G VA RA+ + +
Sbjct: 141 ECDKYVRRGAWKFGDFKLTTKFSGKRVGIIGLGRIGLAVAERAEAFDCPISYFSRSKKPN 200
Query: 234 RARAIGVDLVSFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVID 293
+ E + +D + + PLTP T+ ++N E + +IN+ RG +D
Sbjct: 201 TNYTYYGSV---VELASNSDILVVACPLTPETTHIINREVIDALGPKGVLINIGRGPHVD 257
Query: 294 EEALVRALDSGRVAQAALDVFTEEPPPADSKLVQHERVTVTPHLGASTMEAQEGVAIEIA 353
E LV AL GR+ A LDVF EP KL E V + PH+G+ T+E ++ +A +
Sbjct: 258 EPELVSALVEGRLGGAGLDVFEREPEV-PEKLFGLENVVLLPHVGSGTVETRKVMADLVV 316
Query: 354 EAVVGALKGELAATAV 369
+ G+ T V
Sbjct: 317 GNLEAHFSGKPLLTPV 332
|
| >3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp} Length = 324 | Back alignment and structure |
|---|
Score = 201 bits (514), Expect = 5e-60
Identities = 71/287 (24%), Positives = 117/287 (40%), Gaps = 8/287 (2%)
Query: 57 SKPTVLIAEKLGQAGLDLLNEFANVDCAYNLSPEELCTKISLCDALIVRSGTKVNRDVFE 116
S+ T+L+ + LL + + + + +A I+ + + +
Sbjct: 4 SQRTLLLLSQDNAHYERLLKAAHLPHLRILRADNQSDAEKLIGEAHILMAEPARAKPLLA 63
Query: 117 SSAGRLKVVGRAGVGIDNVDLAAATEFGCLVVNAPTANTVAAAEHGIALLAAMARNVAQA 176
A +L G+D + L A + N +E+ L ++ R +
Sbjct: 64 K-ANKLSWFQSTYAGVDVL-LDARCRRDYQLTNVRGIFGPLMSEYVFGHLLSLMRQLPLY 121
Query: 177 DASVKAGKWQRNKYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIA--HDPYAPADR 234
K WQ + Y L G+TL +LG G +G +A K GM V+ A
Sbjct: 122 REQQKQRLWQSHPYQ--GLKGRTLLILGTGSIGQHIAHTGKHFGMKVLGVSRSGRERAGF 179
Query: 235 ARAIGVDLVSFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVIDE 294
+ + + ++ +A AD I +P T T + F K G + NV RG I+E
Sbjct: 180 DQVYQLP--ALNKMLAQADVIVSVLPATRETHHLFTASRFEHCKPGAILFNVGRGNAINE 237
Query: 295 EALVRALDSGRVAQAALDVFTEEPPPADSKLVQHERVTVTPHLGAST 341
L+ AL +G++ A LDVF +EP PADS L + +TPH A +
Sbjct: 238 GDLLTALRTGKLGMAVLDVFEQEPLPADSPLWGQPNLIITPHNSAYS 284
|
| >3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A Length = 315 | Back alignment and structure |
|---|
Score = 185 bits (472), Expect = 5e-54
Identities = 55/229 (24%), Positives = 97/229 (42%), Gaps = 12/229 (5%)
Query: 121 RLKVVGRAGVGIDNVDLAAATEFGCLVVNAPTANTVAA------AEHGIALLAAMARNVA 174
RLK V G G+D + L + P E+ ++ + R
Sbjct: 59 RLKAVFVLGAGVDAILSKLNAHPEMLDASIPLFRLEDTGMGLQMQEYAVSQVLHWFRRFD 118
Query: 175 QADASVKAGKWQRNKYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVI--AHDPYAPA 232
A W+ + ++ ++G G +G++VA + G + + +
Sbjct: 119 DYQALKNQALWKP--LPEYTREEFSVGIMGAGVLGAKVAESLQAWGFPLRCWSRSRKSWP 176
Query: 233 DRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVI 292
+G + + + +P T T ++N E ++ G ++N+ARG +
Sbjct: 177 GVESYVGRE--ELRAFLNQTRVLINLLPNTAQTVGIINSELLDQLPDGAYVLNLARGVHV 234
Query: 293 DEEALVRALDSGRVAQAALDVFTEEPPPADSKLVQHERVTVTPHLGAST 341
E L+ ALDSG++ A LDVF++EP P +S L +H RV +TPH+ A T
Sbjct: 235 QEADLLAALDSGKLKGAMLDVFSQEPLPQESPLWRHPRVAMTPHIAAVT 283
|
| >3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans} Length = 293 | Back alignment and structure |
|---|
Score = 80.4 bits (198), Expect = 8e-17
Identities = 23/124 (18%), Positives = 42/124 (33%), Gaps = 9/124 (7%)
Query: 192 GVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHD-PYAPADRARAIGVDLVSFD---E 247
++ G +AVLG G+VG VAR+ LG V R +G++ +
Sbjct: 150 DFTIHGANVAVLGLGRVGMSVARKFAALGAKVKVGARESDLLARIAEMGMEPFHISKAAQ 209
Query: 248 AIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVIDEEALVRALDSGRVA 307
+ D +P + V+ +M +I++A + +
Sbjct: 210 ELRDVDVCINTIP-----ALVVTANVLAEMPSHTFVIDLASKPGGTDFRYAEKRGIKALL 264
Query: 308 QAAL 311
L
Sbjct: 265 VPGL 268
|
| >2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis} Length = 300 | Back alignment and structure |
|---|
Score = 52.5 bits (126), Expect = 1e-07
Identities = 35/173 (20%), Positives = 61/173 (35%), Gaps = 18/173 (10%)
Query: 136 DLAAATEFGCLVV--NAPTANTVAAAEHGIALLAAMARN---VAQADASVKAGKWQRNKY 190
D T C++ + AA+ L+ R+ + + +V+ ++
Sbjct: 91 DHLDRTPAHCVIFSGISNAYLENIAAQAKRKLVKLFERDDIAIYNSIPTVEGTIMLAIQH 150
Query: 191 VGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHV--IAHDPYAPADRARAIG---VDLVSF 245
++ G +AVLG G+ G +AR LG +V A A R +G
Sbjct: 151 TDYTIHGSQVAVLGLGRTGMTIARTFAALGANVKVGARSSAHLA-RITEMGLVPFHTDEL 209
Query: 246 DEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVA--RGGVIDEEA 296
E + D + S +LN M I+++A GG + A
Sbjct: 210 KEHVKDIDIC-----INTIPSMILNQTVLSSMTPKTLILDLASRPGGTDFKYA 257
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 51.4 bits (122), Expect = 7e-07
Identities = 52/348 (14%), Positives = 108/348 (31%), Gaps = 98/348 (28%)
Query: 271 DETFGKMKKGVR-IINVARGGVIDEEALVRALDSGRVAQAALDVFTEEPPPADSKLVQHE 329
D G+ + + I++V E+A V D V + ++E D ++ +
Sbjct: 8 DFETGEHQYQYKDILSV------FEDAFVDNFDCKDVQDMPKSILSKE--EIDHIIMSKD 59
Query: 330 RVTVTPHLGASTMEAQEGVAIEIAEAV--------VGALKGELAATA------------- 368
V+ T L + + QE + + E V + +K E +
Sbjct: 60 AVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRL 119
Query: 369 --VNAPMVPAEVLTELKPFVELAEKLGRLAVQ---LVAG--GSGVKTVKVSYASSRAPDD 421
N V + L+P+++L + L L L+ G GSG KT
Sbjct: 120 YNDNQVFAKYNV-SRLQPYLKLRQALLELRPAKNVLIDGVLGSG-KTWVALDVCL----- 172
Query: 422 LDTRLLRAM------ITKG-------LIEPISDVFVNLV-----NADYT---------AK 454
++ M + ++E + + + +D++ +
Sbjct: 173 -SYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQ 231
Query: 455 QRGLRLTEER------ILLDG--SPESPLE-F-IQVQIANVESKFASAI-SESGEIKVEG 503
RL + + ++L + ++ F + +I + ++F S
Sbjct: 232 AELRRLLKSKPYENCLLVLLNVQNAKA-WNAFNLSCKIL-LTTRFKQVTDFLSAATTTHI 289
Query: 504 RVKDGVPHLTKVGSFE-----VDVSLEGSIILCRQVDQ--P---GMIG 541
+ LT +D + L R+V P +I
Sbjct: 290 SLDHHSMTLTPDEVKSLLLKYLDCRPQD---LPREVLTTNPRRLSIIA 334
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 43.3 bits (101), Expect = 3e-04
Identities = 82/535 (15%), Positives = 143/535 (26%), Gaps = 221/535 (41%)
Query: 8 CAASLRQPSLKLSLSS-KHSLSPLFSVSFNHKRAPPRLVIIA------------------ 48
+ S ++KL + S + L L S ++ L+++
Sbjct: 214 TSRSDHSSNIKLRIHSIQAELRRLLK-SKPYENC---LLVLLNVQNAKAWNAFNLSCKIL 269
Query: 49 -----SAAADGISSKPTVLIAEKLGQAGL---DLLNEFAN-VDCAYNLSPEELCT----K 95
D +S+ T I+ L ++ + +DC P E+ T +
Sbjct: 270 LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRR 329
Query: 96 ISLCDALIVRSGT-------KVNRD----VFESSAGRLKVVGRAGVGIDNVDLAAATE-F 143
+S+ I R G VN D + ESS ++ ++ A + F
Sbjct: 330 LSIIAESI-RDGLATWDNWKHVNCDKLTTIIESS-------------LNVLEPAEYRKMF 375
Query: 144 GCLV-----VNAPTANTVAAAEHGIALLAAMARNVAQADASVKAGKWQRNKYVGVSLVGK 198
L + PT LL+ + W V +V
Sbjct: 376 DRLSVFPPSAHIPT-----------ILLSLI---------------WFDVIKSDVMVVVN 409
Query: 199 TLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPADRARAIGVDLVSFDEAIATADFISLH 258
L S V ++ K + + Y + + + +LH
Sbjct: 410 KLHKY------SLVEKQPKESTISI--PSIY---------------LELKVKLENEYALH 446
Query: 259 MPLTPATSKVLNDETFGKMKKGVRIINVARGGVIDEEALVRALDSGRVAQAALDVFTEEP 318
R I +D + + DS P
Sbjct: 447 -----------------------RSI-------VDHYNIPKTFDSD----------DLIP 466
Query: 319 PPADSKLVQHERVTVTPHLGASTMEAQEGVAIEIAEAVVGALKGELAATAVNAPMVPAEV 378
P D H + HL IE E + V
Sbjct: 467 PYLDQYFYSH----IGHHL----------KNIEHPE---------------RMTLFR-MV 496
Query: 379 LTELKPFVELAEKLGRLAVQLVAGGSGVKTVKVSYASSRAPDDLDTRLLRAMITK----- 433
+ + F+E +K+ + A GS + T+ + + I
Sbjct: 497 FLDFR-FLE--QKIRHDSTAWNASGSILNTL------------QQLKFYKPYICDNDPKY 541
Query: 434 -GLIEPISDVFV-----NLVNADYTA-KQRGLRLTEERILLDGSPESPLEFIQVQ 481
L+ I D F+ NL+ + YT + L +E I + QVQ
Sbjct: 542 ERLVNAILD-FLPKIEENLICSKYTDLLRIALMAEDEAIFEEA-------HKQVQ 588
|
| >1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A* Length = 355 | Back alignment and structure |
|---|
Score = 49.1 bits (118), Expect = 2e-06
Identities = 23/94 (24%), Positives = 37/94 (39%), Gaps = 11/94 (11%)
Query: 194 SLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPA-DRARAIGVDLVSFDEAIAT- 251
SL G T+ V G G VG +A A G ++ D A A+G V+ ++ ++T
Sbjct: 172 SLDGLTVLVQGLGAVGGSLASLAAEAGAQLLVADTDTERVAHAVALGHTAVALEDVLSTP 231
Query: 252 ADFISLHMPLTP-ATSKVLNDETFGKMKKGVRII 284
D P A V+ E + ++
Sbjct: 232 CDV------FAPCAMGGVITTEVARTLD--CSVV 257
|
| >3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A* Length = 435 | Back alignment and structure |
|---|
Score = 46.1 bits (110), Expect = 2e-05
Identities = 27/99 (27%), Positives = 39/99 (39%), Gaps = 13/99 (13%)
Query: 193 VSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAH--DPYAPADRARAIGVDLVSFDEAIA 250
+ GK + V G+G+VG K +G V DP A +A G LV +E I
Sbjct: 216 MMFGGKQVVVCGYGEVGKGCCAALKAMGSIVYVTEIDPIC-ALQACMDGFRLVKLNEVIR 274
Query: 251 TAD-FISLHMPLTPAT--SKVLNDETFGKMKKGVRIINV 286
D I+ T V+ E +MK + N+
Sbjct: 275 QVDIVIT-------CTGNKNVVTREHLDRMKNSCIVCNM 306
|
| >1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1 Length = 364 | Back alignment and structure |
|---|
Score = 45.6 bits (109), Expect = 3e-05
Identities = 22/102 (21%), Positives = 41/102 (40%), Gaps = 12/102 (11%)
Query: 187 RNKYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPADRARAIGVDLVSFD 246
+ + SL G ++V G G V + ++ G ++ D A+ V+ +
Sbjct: 163 KEAFGSDSLEGLAVSVQGLGNVAKALCKKLNTEGAKLVVTD-----VNKAAVS-AAVAEE 216
Query: 247 --EAIATADFISLHMP-LTP-ATSKVLNDETFGKMKKGVRII 284
+A+A + P A VLND T ++K ++I
Sbjct: 217 GADAVAPNAIYGVTCDIFAPCALGAVLNDFTIPQLK--AKVI 256
|
| >3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP} Length = 286 | Back alignment and structure |
|---|
Score = 45.1 bits (106), Expect = 3e-05
Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Query: 197 GKTLAVLG-FGKVGSEVARRAKGLGMHVIAHDPY-APADRARAIGVDLVSFDEAIATADF 254
KT+A+LG GK+G+ + R+ H+ A + DR + +G+ L D I AD
Sbjct: 11 PKTVAILGAGGKMGARITRKIHDSAHHLAAIEIAPEGRDRLQGMGIPLTDGDGWIDEADV 70
Query: 255 ISLHMP 260
+ L +P
Sbjct: 71 VVLALP 76
|
| >3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A* Length = 436 | Back alignment and structure |
|---|
Score = 45.3 bits (108), Expect = 4e-05
Identities = 25/99 (25%), Positives = 43/99 (43%), Gaps = 13/99 (13%)
Query: 193 VSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAH--DPYAPADRARAIGVDLVSFDEAIA 250
V + GKT V G+G VG A +G G V+ DP A +A G ++ ++ +
Sbjct: 207 VMIAGKTACVCGYGDVGKGCAAALRGFGARVVVTEVDPIN-ALQAAMEGYQVLLVEDVVE 265
Query: 251 TAD-FISLHMPLTPAT--SKVLNDETFGKMKKGVRIINV 286
A F++ T ++ E F +M+ + N+
Sbjct: 266 EAHIFVT-------TTGNDDIITSEHFPRMRDDAIVCNI 297
|
| >3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus} Length = 464 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 4e-05
Identities = 29/97 (29%), Positives = 44/97 (45%), Gaps = 9/97 (9%)
Query: 193 VSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAH--DPYAPADRARAIGVDLVSFDEAIA 250
V + GK V G+G VG A+ G G V DP A +A G ++V+ D+A +
Sbjct: 243 VMMAGKVAVVCGYGDVGKGSAQSLAGAGARVKVTEVDPIC-ALQAAMDGFEVVTLDDAAS 301
Query: 251 TAD-FISLHMPLTPATSKVLNDETFGKMKKGVRIINV 286
TAD ++ T V+ + KMK + N+
Sbjct: 302 TADIVVT-----TTGNKDVITIDHMRKMKDMCIVGNI 333
|
| >3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A* Length = 494 | Back alignment and structure |
|---|
Score = 43.6 bits (103), Expect = 1e-04
Identities = 27/97 (27%), Positives = 42/97 (43%), Gaps = 9/97 (9%)
Query: 193 VSLVGKTLAVLGFGKVGSEVARRAKGLGMHVI--AHDPYAPADRARAIGVDLVSFDEAIA 250
V + GK V G+G VG A+ +GLG V DP A +A G +V+ + A
Sbjct: 273 VMIAGKIAVVAGYGDVGKGCAQSLRGLGATVWVTEIDPIC-ALQAAMEGYRVVTMEYAAD 331
Query: 251 TAD-FISLHMPLTPATSKVLNDETFGKMKKGVRIINV 286
AD F++ V+N + M+ + N+
Sbjct: 332 KADIFVT-----ATGNYHVINHDHMKAMRHNAIVCNI 363
|
| >1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3 Length = 479 | Back alignment and structure |
|---|
Score = 42.9 bits (101), Expect = 3e-04
Identities = 28/91 (30%), Positives = 39/91 (42%), Gaps = 9/91 (9%)
Query: 193 VSLVGKTLAVLGFGKVGSEVARRAKGLGMHVI--AHDPYAPADRARAIGVDLVSFDEAIA 250
+ GK + + G+G VG A KGLG V DP A +A G ++V+ DE +
Sbjct: 253 FLISGKIVVICGYGDVGKGCASSMKGLGARVYITEIDPI-CAIQAVMEGFNVVTLDEIVD 311
Query: 251 TAD-FISLHMPLTPATSKVLNDETFGKMKKG 280
D FI+ V+ E KMK
Sbjct: 312 KGDFFIT-----CTGNVDVIKLEHLLKMKNN 337
|
| >3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A* Length = 494 | Back alignment and structure |
|---|
Score = 42.5 bits (100), Expect = 4e-04
Identities = 27/97 (27%), Positives = 41/97 (42%), Gaps = 9/97 (9%)
Query: 193 VSLVGKTLAVLGFGKVGSEVARRAKGLGMHVI--AHDPYAPADRARAIGVDLVSFDEAIA 250
+ GK + + G+G VG A KG G V DP A +A G D+V+ +EAI
Sbjct: 270 ALIGGKKVLICGYGDVGKGCAEAMKGQGARVSVTEIDP-INALQAMMEGFDVVTVEEAIG 328
Query: 251 TAD-FISLHMPLTPATSKVLNDETFGKMKKGVRIINV 286
AD ++ ++ E MK + N+
Sbjct: 329 DADIVVT-----ATGNKDIIMLEHIKAMKDHAILGNI 360
|
| >3aoe_E Glutamate dehydrogenase; rossmann fold, NADH, oxidoreductase; 2.60A {Thermus thermophilus} Length = 419 | Back alignment and structure |
|---|
Score = 41.3 bits (98), Expect = 6e-04
Identities = 17/37 (45%), Positives = 23/37 (62%)
Query: 189 KYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIA 225
K G+ L G + V G G+VG+ VA A+ LGM V+A
Sbjct: 210 KRRGLDLRGARVVVQGLGQVGAAVALHAERLGMRVVA 246
|
| >3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032} Length = 341 | Back alignment and structure |
|---|
Score = 41.2 bits (97), Expect = 7e-04
Identities = 17/80 (21%), Positives = 31/80 (38%), Gaps = 7/80 (8%)
Query: 198 KTLAVLGFGKVGSEVARRAKGLGMHVIAHDP-YAPADRARAIGVDLV-----SFDEAIAT 251
+ + +LG G +G + R V ++ + A A G D+ + A A
Sbjct: 9 RPVCILGLGLIGGSLLRDLHAANHSVFGYNRSRSGAKSAVDEGFDVSADLEATLQRAAAE 68
Query: 252 ADFISLHMPLTPATSKVLND 271
I L +P+ A +L+
Sbjct: 69 DALIVLAVPM-TAIDSLLDA 87
|
| >3aog_A Glutamate dehydrogenase; NAD(H), oxidoreducta; HET: GLU; 2.10A {Thermus thermophilus HB27} PDB: 3aoe_A Length = 440 | Back alignment and structure |
|---|
Score = 41.0 bits (97), Expect = 8e-04
Identities = 13/37 (35%), Positives = 21/37 (56%)
Query: 189 KYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIA 225
+ +G+ + G +A+ GFG VG+ AR G V+A
Sbjct: 227 EKIGLQVEGARVAIQGFGNVGNAAARAFHDHGARVVA 263
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 600 | |||
| 1ygy_A | 529 | PGDH, D-3-phosphoglycerate dehydrogenase; oxidored | 100.0 | |
| 1sc6_A | 404 | PGDH, D-3-phosphoglycerate dehydrogenase; alloster | 100.0 | |
| 3k5p_A | 416 | D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, | 100.0 | |
| 4g2n_A | 345 | D-isomer specific 2-hydroxyacid dehydrogenase, Na; | 100.0 | |
| 4e5n_A | 330 | Thermostable phosphite dehydrogenase; D-2-hydroxya | 100.0 | |
| 4dgs_A | 340 | Dehydrogenase; structural genomics, PSI-biology, N | 100.0 | |
| 3kb6_A | 334 | D-lactate dehydrogenase; oxidoreductase, D-LDH, NA | 100.0 | |
| 2pi1_A | 334 | D-lactate dehydrogenase; oxidoreductase, D-LDH, NA | 100.0 | |
| 3gg9_A | 352 | D-3-phosphoglycerate dehydrogenase oxidoreductase; | 100.0 | |
| 2g76_A | 335 | 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor | 100.0 | |
| 3hg7_A | 324 | D-isomer specific 2-hydroxyacid dehydrogenase FAM | 100.0 | |
| 4hy3_A | 365 | Phosphoglycerate oxidoreductase; PSI-biology, stru | 100.0 | |
| 2yq5_A | 343 | D-isomer specific 2-hydroxyacid dehydrogenase; oxi | 100.0 | |
| 3jtm_A | 351 | Formate dehydrogenase, mitochondrial; mitochondrio | 100.0 | |
| 1wwk_A | 307 | Phosphoglycerate dehydrogenase; riken structural g | 100.0 | |
| 3evt_A | 324 | Phosphoglycerate dehydrogenase; structural genomic | 100.0 | |
| 2ekl_A | 313 | D-3-phosphoglycerate dehydrogenase; structural gen | 100.0 | |
| 1j4a_A | 333 | D-LDH, D-lactate dehydrogenase; NAD-dependent dehy | 100.0 | |
| 1gdh_A | 320 | D-glycerate dehydrogenase; oxidoreductase(CHOH (D) | 100.0 | |
| 1dxy_A | 333 | D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc | 100.0 | |
| 2cuk_A | 311 | Glycerate dehydrogenase/glyoxylate reductase; stru | 100.0 | |
| 1xdw_A | 331 | NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas | 100.0 | |
| 2j6i_A | 364 | Formate dehydrogenase; oxidoreductase, D-specific- | 100.0 | |
| 2nac_A | 393 | NAD-dependent formate dehydrogenase; oxidoreductas | 100.0 | |
| 2w2k_A | 348 | D-mandelate dehydrogenase; 2-hydroxyacid dehydroge | 100.0 | |
| 3ba1_A | 333 | HPPR, hydroxyphenylpyruvate reductase; two domain | 100.0 | |
| 2d0i_A | 333 | Dehydrogenase; structural genomics, NPPSFA, nation | 100.0 | |
| 1mx3_A | 347 | CTBP1, C-terminal binding protein 1; nuclear prote | 100.0 | |
| 2dbq_A | 334 | Glyoxylate reductase; D-3-phosphoglycerate dehydro | 100.0 | |
| 2gcg_A | 330 | Glyoxylate reductase/hydroxypyruvate reductase; NA | 100.0 | |
| 3pp8_A | 315 | Glyoxylate/hydroxypyruvate reductase A; structural | 100.0 | |
| 1qp8_A | 303 | Formate dehydrogenase; oxidoreductase; HET: NDP; 2 | 100.0 | |
| 3oet_A | 381 | Erythronate-4-phosphate dehydrogenase; structural | 100.0 | |
| 3gvx_A | 290 | Glycerate dehydrogenase related protein; NYSGXRC, | 100.0 | |
| 2o4c_A | 380 | Erythronate-4-phosphate dehydrogenase; erythronate | 100.0 | |
| 1v8b_A | 479 | Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2 | 100.0 | |
| 3d64_A | 494 | Adenosylhomocysteinase; structural genomics, ssgci | 100.0 | |
| 3d4o_A | 293 | Dipicolinate synthase subunit A; NP_243269.1, stru | 99.95 | |
| 2rir_A | 300 | Dipicolinate synthase, A chain; structural genomic | 99.92 | |
| 3ce6_A | 494 | Adenosylhomocysteinase; protein-substrate complex, | 99.92 | |
| 2vhw_A | 377 | Alanine dehydrogenase; NAD, secreted, oxidoreducta | 99.89 | |
| 2eez_A | 369 | Alanine dehydrogenase; TTHA0216, structural genomi | 99.77 | |
| 1x13_A | 401 | NAD(P) transhydrogenase subunit alpha; NAD(H)-bind | 99.75 | |
| 1gtm_A | 419 | Glutamate dehydrogenase; oxidoreductase, NAD, NADP | 99.75 | |
| 3ggo_A | 314 | Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b | 99.73 | |
| 1l7d_A | 384 | Nicotinamide nucleotide transhydrogenase, subunit | 99.72 | |
| 3h9u_A | 436 | Adenosylhomocysteinase; NAD CO-factor complex, str | 99.72 | |
| 3ktd_A | 341 | Prephenate dehydrogenase; structural genomics, joi | 99.67 | |
| 3n58_A | 464 | Adenosylhomocysteinase; ssgcid, hydrolase, structu | 99.67 | |
| 1gpj_A | 404 | Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro | 99.61 | |
| 3gvp_A | 435 | Adenosylhomocysteinase 3; protein CO-factor comple | 99.59 | |
| 2g5c_A | 281 | Prephenate dehydrogenase; TYRA, oxidoreductase; HE | 99.55 | |
| 3b1f_A | 290 | Putative prephenate dehydrogenase; enzyme, 4-hydro | 99.42 | |
| 2pv7_A | 298 | T-protein [includes: chorismate mutase (EC 5.4.99 | 99.4 | |
| 2f1k_A | 279 | Prephenate dehydrogenase; tyrosine synthesis, X-RA | 99.25 | |
| 3p2y_A | 381 | Alanine dehydrogenase/pyridine nucleotide transhy; | 99.24 | |
| 4dll_A | 320 | 2-hydroxy-3-oxopropionate reductase; structural ge | 99.21 | |
| 3obb_A | 300 | Probable 3-hydroxyisobutyrate dehydrogenase; struc | 99.21 | |
| 3l6d_A | 306 | Putative oxidoreductase; structural genomics, prot | 99.19 | |
| 4ezb_A | 317 | Uncharacterized conserved protein; structural geno | 99.18 | |
| 3doj_A | 310 | AT3G25530, dehydrogenase-like protein; gamma-hydro | 99.17 | |
| 1c1d_A | 355 | L-phenylalanine dehydrogenase; amino acid dehydrog | 99.16 | |
| 4gbj_A | 297 | 6-phosphogluconate dehydrogenase NAD-binding; stru | 99.16 | |
| 4e12_A | 283 | Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1 | 99.15 | |
| 3qsg_A | 312 | NAD-binding phosphogluconate dehydrogenase-like P; | 99.13 | |
| 4dio_A | 405 | NAD(P) transhydrogenase subunit alpha PART 1; stru | 99.12 | |
| 3qha_A | 296 | Putative oxidoreductase; seattle structural genomi | 99.12 | |
| 1np3_A | 338 | Ketol-acid reductoisomerase; A DEEP figure-OF-eigh | 99.12 | |
| 4e21_A | 358 | 6-phosphogluconate dehydrogenase (decarboxylating; | 99.11 | |
| 3ond_A | 488 | Adenosylhomocysteinase; plant protein, enzyme-subs | 99.11 | |
| 2d5c_A | 263 | AROE, shikimate 5-dehydrogenase; substrate, dimer, | 99.1 | |
| 3pef_A | 287 | 6-phosphogluconate dehydrogenase, NAD-binding; gam | 99.09 | |
| 3g0o_A | 303 | 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine | 99.07 | |
| 3pdu_A | 287 | 3-hydroxyisobutyrate dehydrogenase family protein; | 99.05 | |
| 2h78_A | 302 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601 | 99.02 | |
| 2hk9_A | 275 | Shikimate dehydrogenase; shikimate pathway, drug d | 98.98 | |
| 2iaf_A | 151 | Hypothetical protein SDHL; MCSG, PSI2, MAD, struct | 98.94 | |
| 2dpo_A | 319 | L-gulonate 3-dehydrogenase; structural genomics, N | 98.9 | |
| 1zej_A | 293 | HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural | 98.89 | |
| 4gwg_A | 484 | 6-phosphogluconate dehydrogenase, decarboxylating; | 98.88 | |
| 3fr7_A | 525 | Putative ketol-acid reductoisomerase (OS05G057370 | 98.88 | |
| 1vpd_A | 299 | Tartronate semialdehyde reductase; structural geno | 98.86 | |
| 3dtt_A | 245 | NADP oxidoreductase; structural genomics, joint ce | 98.85 | |
| 1yb4_A | 295 | Tartronic semialdehyde reductase; structural genom | 98.85 | |
| 2gf2_A | 296 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct | 98.84 | |
| 2cvz_A | 289 | Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; | 98.84 | |
| 2yjz_A | 201 | Metalloreductase steap4; oxidoreductase, metabolic | 98.34 | |
| 3cky_A | 301 | 2-hydroxymethyl glutarate dehydrogenase; rossmann | 98.83 | |
| 3k6j_A | 460 | Protein F01G10.3, confirmed by transcript evidenc; | 98.82 | |
| 2zyd_A | 480 | 6-phosphogluconate dehydrogenase, decarboxylating; | 98.8 | |
| 1i36_A | 264 | Conserved hypothetical protein MTH1747; NADP bindi | 98.78 | |
| 2uyy_A | 316 | N-PAC protein; long-chain dehydrogenase, cytokine; | 98.77 | |
| 2p4q_A | 497 | 6-phosphogluconate dehydrogenase, decarboxylating; | 98.75 | |
| 1leh_A | 364 | Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi | 98.7 | |
| 2iz1_A | 474 | 6-phosphogluconate dehydrogenase, decarboxylating; | 98.69 | |
| 2pgd_A | 482 | 6-phosphogluconate dehydrogenase; oxidoreductase ( | 98.67 | |
| 3d1l_A | 266 | Putative NADP oxidoreductase BF3122; structural ge | 98.67 | |
| 1pjc_A | 361 | Protein (L-alanine dehydrogenase); oxidoreductase, | 98.67 | |
| 3c24_A | 286 | Putative oxidoreductase; YP_511008.1, structural g | 98.66 | |
| 2q3e_A | 467 | UDP-glucose 6-dehydrogenase; hexamer, structural g | 98.61 | |
| 2vns_A | 215 | Metalloreductase steap3; metal-binding, transmembr | 98.6 | |
| 1pgj_A | 478 | 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o | 98.6 | |
| 2raf_A | 209 | Putative dinucleotide-binding oxidoreductase; NP_7 | 98.54 | |
| 3oj0_A | 144 | Glutr, glutamyl-tRNA reductase; structural genomic | 98.54 | |
| 3pid_A | 432 | UDP-glucose 6-dehydrogenase; rossmann fold, oxidor | 98.53 | |
| 1f0y_A | 302 | HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive | 98.5 | |
| 3gt0_A | 247 | Pyrroline-5-carboxylate reductase; structural geno | 98.47 | |
| 2izz_A | 322 | Pyrroline-5-carboxylate reductase 1; amino-acid bi | 98.44 | |
| 2ahr_A | 259 | Putative pyrroline carboxylate reductase; pyrrolin | 98.42 | |
| 3dfu_A | 232 | Uncharacterized protein from 6-phosphogluconate de | 98.4 | |
| 3mog_A | 483 | Probable 3-hydroxybutyryl-COA dehydrogenase; struc | 98.4 | |
| 1yqg_A | 263 | Pyrroline-5-carboxylate reductase; structural geno | 98.37 | |
| 3tri_A | 280 | Pyrroline-5-carboxylate reductase; amino acid bios | 98.35 | |
| 3gg2_A | 450 | Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd | 98.32 | |
| 1zcj_A | 463 | Peroxisomal bifunctional enzyme; peroxisomal multi | 98.32 | |
| 2i99_A | 312 | MU-crystallin homolog; thyroid hormine binding pro | 98.31 | |
| 3p2o_A | 285 | Bifunctional protein fold; structural genomics, ce | 98.3 | |
| 4a7p_A | 446 | UDP-glucose dehydrogenase; oxidoreductase, carbohy | 98.29 | |
| 1mv8_A | 436 | GMD, GDP-mannose 6-dehydrogenase; rossman fold, do | 98.29 | |
| 1b0a_A | 288 | Protein (fold bifunctional protein); folate, dehyd | 98.26 | |
| 1bg6_A | 359 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L | 98.23 | |
| 1y7p_A | 223 | Hypothetical protein AF1403; structural genomics, | 98.2 | |
| 1jay_A | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma | 98.2 | |
| 2rcy_A | 262 | Pyrroline carboxylate reductase; malaria, structur | 98.19 | |
| 1dlj_A | 402 | UDP-glucose dehydrogenase; rossmann fold, ternary | 98.19 | |
| 1txg_A | 335 | Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid | 98.18 | |
| 2y0c_A | 478 | BCEC, UDP-glucose dehydrogenase; oxidoreductase, c | 98.17 | |
| 2ew2_A | 316 | 2-dehydropantoate 2-reductase, putative; alpha-str | 98.16 | |
| 3k96_A | 356 | Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA | 98.14 | |
| 4huj_A | 220 | Uncharacterized protein; PSI-biology, nysgrc, stru | 98.13 | |
| 3ado_A | 319 | Lambda-crystallin; L-gulonate 3-dehydrogenase, str | 98.12 | |
| 3ojo_A | 431 | CAP5O; rossmann fold, complex with cofactor NAD an | 98.1 | |
| 1wdk_A | 715 | Fatty oxidation complex alpha subunit; alpha2BETA2 | 98.1 | |
| 1x0v_A | 354 | GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase | 98.08 | |
| 2o3j_A | 481 | UDP-glucose 6-dehydrogenase; structural genomics, | 98.07 | |
| 2wtb_A | 725 | MFP2, fatty acid multifunctional protein (ATMFP2); | 98.04 | |
| 1evy_A | 366 | Glycerol-3-phosphate dehydrogenase; rossmann fold, | 98.03 | |
| 3g79_A | 478 | NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; | 98.03 | |
| 3ulk_A | 491 | Ketol-acid reductoisomerase; branched-chain amino | 98.0 | |
| 4a26_A | 300 | Putative C-1-tetrahydrofolate synthase, cytoplasm; | 97.99 | |
| 4a5o_A | 286 | Bifunctional protein fold; oxidoreductase, hydrola | 97.99 | |
| 1yj8_A | 375 | Glycerol-3-phosphate dehydrogenase; SGPP, structur | 97.99 | |
| 3l07_A | 285 | Bifunctional protein fold; structural genomics, ID | 97.99 | |
| 1ks9_A | 291 | KPA reductase;, 2-dehydropantoate 2-reductase; PAN | 97.98 | |
| 2c2x_A | 281 | Methylenetetrahydrofolate dehydrogenase- methenylt | 97.98 | |
| 1z82_A | 335 | Glycerol-3-phosphate dehydrogenase; TM0378, struct | 97.96 | |
| 3ngx_A | 276 | Bifunctional protein fold; methylenetetrahydrofola | 97.96 | |
| 1a4i_A | 301 | Methylenetetrahydrofolate dehydrogenase / methenyl | 97.95 | |
| 2dc1_A | 236 | L-aspartate dehydrogenase; NAD, oxidoreductase; HE | 97.95 | |
| 2qyt_A | 317 | 2-dehydropantoate 2-reductase; APC81190, porphyrom | 97.95 | |
| 1y81_A | 138 | Conserved hypothetical protein; hyperthermophIle, | 97.91 | |
| 1edz_A | 320 | 5,10-methylenetetrahydrofolate dehydrogenase; nucl | 97.91 | |
| 3c85_A | 183 | Putative glutathione-regulated potassium-efflux S | 97.91 | |
| 3phh_A | 269 | Shikimate dehydrogenase; shikimate pathway, helico | 97.88 | |
| 3ghy_A | 335 | Ketopantoate reductase protein; oxidoreductase, NA | 97.87 | |
| 3hdj_A | 313 | Probable ornithine cyclodeaminase; APC62486, borde | 97.86 | |
| 2egg_A | 297 | AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff | 97.83 | |
| 2ko1_A | 88 | CTR148A, GTP pyrophosphokinase; homodimer, alpha+b | 97.83 | |
| 2i76_A | 276 | Hypothetical protein; NADP, dehydrogenase, TM1727, | 97.83 | |
| 3don_A | 277 | Shikimate dehydrogenase; alpha-beta structure, ros | 97.82 | |
| 3i83_A | 320 | 2-dehydropantoate 2-reductase; structural genomics | 97.82 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 97.73 | |
| 3hn2_A | 312 | 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str | 97.7 | |
| 2duw_A | 145 | Putative COA-binding protein; ligand binding prote | 97.68 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 97.68 | |
| 1x7d_A | 350 | Ornithine cyclodeaminase; binds NAD+, binds L-orni | 97.66 | |
| 3u62_A | 253 | Shikimate dehydrogenase; shikimate pathway, oxidor | 97.66 | |
| 3hwr_A | 318 | 2-dehydropantoate 2-reductase; YP_299159.1, PANE/A | 97.65 | |
| 1lss_A | 140 | TRK system potassium uptake protein TRKA homolog; | 97.56 | |
| 3ic5_A | 118 | Putative saccharopine dehydrogenase; structural ge | 97.53 | |
| 2z2v_A | 365 | Hypothetical protein PH1688; L-lysine dehydrogenas | 97.49 | |
| 1omo_A | 322 | Alanine dehydrogenase; two-domain, beta-sandwich-d | 97.46 | |
| 3o8q_A | 281 | Shikimate 5-dehydrogenase I alpha; structural geno | 97.44 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 97.44 | |
| 1nyt_A | 271 | Shikimate 5-dehydrogenase; alpha/beta domains, WID | 97.39 | |
| 2qrj_A | 394 | Saccharopine dehydrogenase, NAD+, L-lysine- formin | 97.39 | |
| 3ego_A | 307 | Probable 2-dehydropantoate 2-reductase; structural | 97.35 | |
| 3c7a_A | 404 | Octopine dehydrogenase; L) stereospecific opine de | 97.35 | |
| 2hmt_A | 144 | YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane | 97.33 | |
| 1vl6_A | 388 | Malate oxidoreductase; TM0542, NAD-dependent malic | 97.32 | |
| 2f1f_A | 164 | Acetolactate synthase isozyme III small subunit; f | 97.3 | |
| 3pwz_A | 272 | Shikimate dehydrogenase 3; alpha-beta, oxidoreduct | 97.28 | |
| 1p77_A | 272 | Shikimate 5-dehydrogenase; NADPH, oxidoreductase; | 97.26 | |
| 2ewd_A | 317 | Lactate dehydrogenase,; protein-substrate_cofactor | 97.22 | |
| 4b4u_A | 303 | Bifunctional protein fold; oxidoreductase; HET: NA | 97.21 | |
| 3vtf_A | 444 | UDP-glucose 6-dehydrogenase; two discrete alpha/be | 97.21 | |
| 1hyh_A | 309 | L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2 | 97.18 | |
| 1guz_A | 310 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 97.18 | |
| 4hkt_A | 331 | Inositol 2-dehydrogenase; structural genomics, nys | 97.16 | |
| 2pc6_A | 165 | Probable acetolactate synthase isozyme III (small; | 97.14 | |
| 1a5z_A | 319 | L-lactate dehydrogenase; oxidoreductase, glycolysi | 97.11 | |
| 1tlt_A | 319 | Putative oxidoreductase (virulence factor MVIM HO; | 97.08 | |
| 3uuw_A | 308 | Putative oxidoreductase with NAD(P)-binding rossm | 97.08 | |
| 3zwc_A | 742 | Peroxisomal bifunctional enzyme; beta oxidation pa | 97.08 | |
| 1nvt_A | 287 | Shikimate 5'-dehydrogenase; structural genomics, P | 97.08 | |
| 1xea_A | 323 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 97.07 | |
| 1pg5_A | 299 | Aspartate carbamoyltransferase; 2.60A {Sulfolobus | 97.07 | |
| 3db2_A | 354 | Putative NADPH-dependent oxidoreductase; two domai | 97.03 | |
| 3euw_A | 344 | MYO-inositol dehydrogenase; protein structure init | 97.02 | |
| 3jyo_A | 283 | Quinate/shikimate dehydrogenase; enzyme-cofactor c | 97.02 | |
| 1zpv_A | 91 | ACT domain protein; structural genomics, PSI, prot | 97.01 | |
| 2glx_A | 332 | 1,5-anhydro-D-fructose reductase; NADP(H) dependen | 97.0 | |
| 3fbt_A | 282 | Chorismate mutase and shikimate 5-dehydrogenase fu | 97.0 | |
| 3q2i_A | 354 | Dehydrogenase; rossmann fold, UDP-sugar binding, N | 97.0 | |
| 3ezy_A | 344 | Dehydrogenase; structural genomics, unknown functi | 96.98 | |
| 2ho3_A | 325 | Oxidoreductase, GFO/IDH/MOCA family; streptococcus | 96.97 | |
| 2ef0_A | 301 | Ornithine carbamoyltransferase; TTHA1199, thermus | 96.95 | |
| 3e18_A | 359 | Oxidoreductase; dehydrogenase, NAD-binding, struct | 96.94 | |
| 3g17_A | 294 | Similar to 2-dehydropantoate 2-reductase; structur | 96.92 | |
| 1id1_A | 153 | Putative potassium channel protein; RCK domain, E. | 96.91 | |
| 3tnl_A | 315 | Shikimate dehydrogenase; structural genomics, cent | 96.91 | |
| 2i6u_A | 307 | Otcase, ornithine carbamoyltransferase; X-RAY crys | 96.9 | |
| 3e9m_A | 330 | Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, | 96.88 | |
| 3bio_A | 304 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 96.86 | |
| 2fgc_A | 193 | Acetolactate synthase, small subunit; regulatory s | 96.86 | |
| 3cea_A | 346 | MYO-inositol 2-dehydrogenase; NP_786804.1, oxidore | 96.84 | |
| 2a9f_A | 398 | Putative malic enzyme ((S)-malate:NAD+ oxidoreduct | 96.81 | |
| 1ldn_A | 316 | L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA | 96.78 | |
| 2d59_A | 144 | Hypothetical protein PH1109; COA binding, structur | 96.77 | |
| 1pzg_A | 331 | LDH, lactate dehydrogenase; apicomplexa, APAD, tet | 96.77 | |
| 2f06_A | 144 | Conserved hypothetical protein; structural genomic | 96.76 | |
| 2v6b_A | 304 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ra | 96.74 | |
| 1vlv_A | 325 | Otcase, ornithine carbamoyltransferase; TM1097, st | 96.74 | |
| 1ml4_A | 308 | Aspartate transcarbamoylase; beta pleated sheet, p | 96.72 | |
| 1pvv_A | 315 | Otcase, ornithine carbamoyltransferase; dodecamer; | 96.71 | |
| 3r7f_A | 304 | Aspartate carbamoyltransferase; aspartate transcar | 96.71 | |
| 3mz0_A | 344 | Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; | 96.68 | |
| 3evn_A | 329 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 96.67 | |
| 1dxh_A | 335 | Ornithine carbamoyltransferase; transcarbamylase; | 96.66 | |
| 1iuk_A | 140 | Hypothetical protein TT1466; structural genomics, | 96.66 | |
| 3rc1_A | 350 | Sugar 3-ketoreductase; sugar biosynthesis, TDP bin | 96.63 | |
| 4a7p_A | 446 | UDP-glucose dehydrogenase; oxidoreductase, carbohy | 96.62 | |
| 1t2d_A | 322 | LDH-P, L-lactate dehydrogenase; ternary complex, o | 96.61 | |
| 2hjr_A | 328 | Malate dehydrogenase; malaria, structural genomics | 96.6 | |
| 3dfz_A | 223 | SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase | 96.58 | |
| 3c1a_A | 315 | Putative oxidoreductase; ZP_00056571.1, oxidoreduc | 96.57 | |
| 3csu_A | 310 | Protein (aspartate carbamoyltransferase); transfer | 96.57 | |
| 3ec7_A | 357 | Putative dehydrogenase; alpha-beta, structural gen | 96.56 | |
| 1duv_G | 333 | Octase-1, ornithine transcarbamoylase; enzyme-inhi | 96.53 | |
| 1jw9_B | 249 | Molybdopterin biosynthesis MOEB protein; MOEB: mod | 96.51 | |
| 4amu_A | 365 | Ornithine carbamoyltransferase, catabolic; ornithi | 96.51 | |
| 1f06_A | 320 | MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH | 96.5 | |
| 4f2g_A | 309 | Otcase 1, ornithine carbamoyltransferase 1; struct | 96.49 | |
| 3t4e_A | 312 | Quinate/shikimate dehydrogenase; structural genomi | 96.49 | |
| 3l4b_C | 218 | TRKA K+ channel protien TM1088B; potassium channel | 96.48 | |
| 3q2o_A | 389 | Phosphoribosylaminoimidazole carboxylase, ATPase; | 96.47 | |
| 3ohs_X | 334 | Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; d | 96.45 | |
| 4a8t_A | 339 | Putrescine carbamoyltransferase; trabnsferase PALO | 96.43 | |
| 3pqe_A | 326 | L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas | 96.43 | |
| 4had_A | 350 | Probable oxidoreductase protein; structural genomi | 96.42 | |
| 1b7g_O | 340 | Protein (glyceraldehyde 3-phosphate dehydrogenase; | 96.42 | |
| 1j5p_A | 253 | Aspartate dehydrogenase; TM1643, structural genomi | 96.41 | |
| 3l9w_A | 413 | Glutathione-regulated potassium-efflux system Pro | 96.41 | |
| 1yqd_A | 366 | Sinapyl alcohol dehydrogenase; lignin, monolignol, | 96.38 | |
| 1oth_A | 321 | Protein (ornithine transcarbamoylase); transferase | 96.37 | |
| 1ydw_A | 362 | AX110P-like protein; structural genomics, protein | 96.36 | |
| 1lld_A | 319 | L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N | 96.31 | |
| 2aef_A | 234 | Calcium-gated potassium channel MTHK; rossmann fol | 96.3 | |
| 3gg2_A | 450 | Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd | 96.29 | |
| 3grf_A | 328 | Ornithine carbamoyltransferase; ornithine transcar | 96.29 | |
| 4ep1_A | 340 | Otcase, ornithine carbamoyltransferase; structural | 96.29 | |
| 4fgw_A | 391 | Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxi | 96.27 | |
| 3nep_X | 314 | Malate dehydrogenase; halophIle, molecular adpatat | 96.27 | |
| 4a8p_A | 355 | Putrescine carbamoyltransferase; ornithine agmatin | 96.26 | |
| 2dvm_A | 439 | Malic enzyme, 439AA long hypothetical malate oxido | 96.25 | |
| 4fb5_A | 393 | Probable oxidoreductase protein; PSI-biology, nysg | 96.24 | |
| 3p7m_A | 321 | Malate dehydrogenase; putative dehydrogenase, enzy | 96.24 | |
| 3fef_A | 450 | Putative glucosidase LPLD; gulosidase, structural | 96.21 | |
| 3m2t_A | 359 | Probable dehydrogenase; PSI, SGXNY, structural gen | 96.19 | |
| 3two_A | 348 | Mannitol dehydrogenase; cinnamyl-alcohol dehydroge | 96.17 | |
| 3e82_A | 364 | Putative oxidoreductase; NAD, GFO/IDH/MOCA family, | 96.14 | |
| 3tpf_A | 307 | Otcase, ornithine carbamoyltransferase; structural | 96.12 | |
| 2w37_A | 359 | Ornithine carbamoyltransferase, catabolic; transca | 96.11 | |
| 1xyg_A | 359 | Putative N-acetyl-gamma-glutamyl-phosphate reduct; | 96.11 | |
| 3vku_A | 326 | L-LDH, L-lactate dehydrogenase; rossmann fold, NAD | 96.11 | |
| 1y6j_A | 318 | L-lactate dehydrogenase; southeast collaboratory f | 96.08 | |
| 1h6d_A | 433 | Precursor form of glucose-fructose oxidoreductase; | 96.07 | |
| 1ur5_A | 309 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 96.07 | |
| 3gd5_A | 323 | Otcase, ornithine carbamoyltransferase; structural | 96.06 | |
| 2axq_A | 467 | Saccharopine dehydrogenase; rossmann fold variant, | 96.05 | |
| 2q3e_A | 467 | UDP-glucose 6-dehydrogenase; hexamer, structural g | 96.05 | |
| 1npy_A | 271 | Hypothetical shikimate 5-dehydrogenase-like protei | 95.96 | |
| 3i23_A | 349 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 95.96 | |
| 3d6n_B | 291 | Aspartate carbamoyltransferase; reactor, chamber, | 95.93 | |
| 3kux_A | 352 | Putative oxidoreductase; oxidoreductase family, cs | 95.92 | |
| 3tl2_A | 315 | Malate dehydrogenase; center for structural genomi | 95.92 | |
| 1piw_A | 360 | Hypothetical zinc-type alcohol dehydrogenase- like | 95.92 | |
| 3gdo_A | 358 | Uncharacterized oxidoreductase YVAA; structural ge | 95.89 | |
| 3moi_A | 387 | Probable dehydrogenase; structural genomics, PSI2, | 95.86 | |
| 2p2s_A | 336 | Putative oxidoreductase; YP_050235.1, structural g | 95.86 | |
| 3qy9_A | 243 | DHPR, dihydrodipicolinate reductase; rossmann fold | 95.86 | |
| 2czc_A | 334 | Glyceraldehyde-3-phosphate dehydrogenase; glycolys | 95.85 | |
| 1js1_X | 324 | Transcarbamylase; alpha/beta topology, two domains | 95.83 | |
| 4gqa_A | 412 | NAD binding oxidoreductase; structural genomics, P | 95.8 | |
| 2vt3_A | 215 | REX, redox-sensing transcriptional repressor REX; | 95.78 | |
| 3ojo_A | 431 | CAP5O; rossmann fold, complex with cofactor NAD an | 95.77 | |
| 2nu8_A | 288 | Succinyl-COA ligase [ADP-forming] subunit alpha; c | 95.75 | |
| 3lk7_A | 451 | UDP-N-acetylmuramoylalanine--D-glutamate ligase; a | 95.74 | |
| 3ldh_A | 330 | Lactate dehydrogenase; oxidoreductase, CHOH donor, | 95.72 | |
| 2cdc_A | 366 | Glucose dehydrogenase glucose 1-dehydrogenase, DHG | 95.7 | |
| 2i6t_A | 303 | Ubiquitin-conjugating enzyme E2-like isoform A; L- | 95.69 | |
| 1oju_A | 294 | MDH, malate dehydrogenase; hyperthermophilic, oxid | 95.67 | |
| 3g79_A | 478 | NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; | 95.67 | |
| 3fhl_A | 362 | Putative oxidoreductase; NAD-binding domain, PSI-2 | 95.67 | |
| 3lou_A | 292 | Formyltetrahydrofolate deformylase; structural gen | 95.66 | |
| 3f4l_A | 345 | Putative oxidoreductase YHHX; structural genomics, | 95.65 | |
| 4fcc_A | 450 | Glutamate dehydrogenase; protein complex, rossmann | 95.64 | |
| 3d0o_A | 317 | L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly | 95.64 | |
| 4ekn_B | 306 | Aspartate carbamoyltransferase; atcase, aspartate | 95.62 | |
| 3gvi_A | 324 | Malate dehydrogenase; NAD, oxidoreductase, tricarb | 95.61 | |
| 3o9z_A | 312 | Lipopolysaccaride biosynthesis protein WBPB; oxido | 95.6 | |
| 3sds_A | 353 | Ornithine carbamoyltransferase, mitochondrial; str | 95.57 | |
| 2ozp_A | 345 | N-acetyl-gamma-glutamyl-phosphate reductase; amino | 95.56 | |
| 4h31_A | 358 | Otcase, ornithine carbamoyltransferase; structural | 95.56 | |
| 1ez4_A | 318 | Lactate dehydrogenase; rossmann fold, oxidoreducta | 95.54 | |
| 3dty_A | 398 | Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetram | 95.53 | |
| 2zqz_A | 326 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ro | 95.53 | |
| 1uuf_A | 369 | YAHK, zinc-type alcohol dehydrogenase-like protein | 95.51 | |
| 3orq_A | 377 | N5-carboxyaminoimidazole ribonucleotide synthetas; | 95.51 | |
| 3oa2_A | 318 | WBPB; oxidoreductase, sugar biosynthesis, dehydrog | 95.51 | |
| 3abi_A | 365 | Putative uncharacterized protein PH1688; L-lysine | 95.49 | |
| 3e8x_A | 236 | Putative NAD-dependent epimerase/dehydratase; stru | 95.47 | |
| 1cdo_A | 374 | Alcohol dehydrogenase; oxidoreductase, oxidoreduct | 95.46 | |
| 3tum_A | 269 | Shikimate dehydrogenase family protein; rossmann-f | 95.45 | |
| 3aog_A | 440 | Glutamate dehydrogenase; NAD(H), oxidoreducta; HET | 95.44 | |
| 4h3v_A | 390 | Oxidoreductase domain protein; structural genomics | 95.44 | |
| 1zh8_A | 340 | Oxidoreductase; TM0312, structural genomics, JO ce | 95.44 | |
| 3obi_A | 288 | Formyltetrahydrofolate deformylase; structural gen | 95.42 | |
| 1ys4_A | 354 | Aspartate-semialdehyde dehydrogenase; oxidoreducta | 95.41 | |
| 2nqt_A | 352 | N-acetyl-gamma-glutamyl-phosphate reductase; apopr | 95.36 | |
| 2jhf_A | 374 | Alcohol dehydrogenase E chain; oxidoreductase, met | 95.36 | |
| 4gmf_A | 372 | Yersiniabactin biosynthetic protein YBTU; rossmann | 95.36 | |
| 1zq6_A | 359 | Otcase, ornithine carbamoyltransferase; alpha/beta | 95.33 | |
| 1rjw_A | 339 | ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD | 95.33 | |
| 2y0c_A | 478 | BCEC, UDP-glucose dehydrogenase; oxidoreductase, c | 95.32 | |
| 1cf2_P | 337 | Protein (glyceraldehyde-3-phosphate dehydrogenase) | 95.3 | |
| 2dt5_A | 211 | AT-rich DNA-binding protein; REX, NADH, NAD, rossm | 95.3 | |
| 1p0f_A | 373 | NADP-dependent alcohol dehydrogenase; ADH topology | 95.27 | |
| 2d8a_A | 348 | PH0655, probable L-threonine 3-dehydrogenase; pyro | 95.26 | |
| 3eag_A | 326 | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME | 95.25 | |
| 1e3i_A | 376 | Alcohol dehydrogenase, class II; HET: NAD; 2.08A { | 95.25 | |
| 1zud_1 | 251 | Adenylyltransferase THIF; thiamin, thiazole, prote | 95.21 | |
| 3v5n_A | 417 | Oxidoreductase; structural genomics, PSI-biology, | 95.21 | |
| 3u3x_A | 361 | Oxidoreductase; structural genomics, PSI-biology, | 95.2 | |
| 3ew7_A | 221 | LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend | 95.2 | |
| 3n0v_A | 286 | Formyltetrahydrofolate deformylase; formyl transfe | 95.19 | |
| 2nvw_A | 479 | Galactose/lactose metabolism regulatory protein GA | 95.18 | |
| 3do5_A | 327 | HOM, homoserine dehydrogenase; NP_069768.1, putati | 95.14 | |
| 4ew6_A | 330 | D-galactose-1-dehydrogenase protein; nysgrc, PSI-b | 95.12 | |
| 2o3j_A | 481 | UDP-glucose 6-dehydrogenase; structural genomics, | 95.1 | |
| 3btv_A | 438 | Galactose/lactose metabolism regulatory protein GA | 95.1 | |
| 1lc0_A | 294 | Biliverdin reductase A; oxidoreductase, tetrapyrro | 95.09 | |
| 1ff9_A | 450 | Saccharopine reductase; lysine biosynthesis, alpha | 95.09 | |
| 2fzw_A | 373 | Alcohol dehydrogenase class III CHI chain; S-nitro | 95.08 | |
| 2tmg_A | 415 | Protein (glutamate dehydrogenase); metabolic role, | 95.08 | |
| 2ixa_A | 444 | Alpha-N-acetylgalactosaminidase; NAD, A-ECO conver | 95.07 | |
| 2cf5_A | 357 | Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign | 95.06 | |
| 3s2e_A | 340 | Zinc-containing alcohol dehydrogenase superfamily; | 95.04 | |
| 1u8f_O | 335 | GAPDH, glyceraldehyde-3-phosphate dehydrogenase, l | 95.03 | |
| 3o1l_A | 302 | Formyltetrahydrofolate deformylase; structural gen | 95.03 | |
| 1pjq_A | 457 | CYSG, siroheme synthase; rossman fold, nucleotide | 94.99 | |
| 1nvm_B | 312 | Acetaldehyde dehydrogenase (acylating), 4-hydroxy- | 94.92 | |
| 2nyi_A | 195 | Unknown protein; protein structure initiative, PSI | 94.88 | |
| 4ej6_A | 370 | Putative zinc-binding dehydrogenase; structural ge | 94.88 | |
| 4aj2_A | 331 | L-lactate dehydrogenase A chain; oxidoreductase-in | 94.87 | |
| 3ip1_A | 404 | Alcohol dehydrogenase, zinc-containing; structural | 94.87 | |
| 1pl8_A | 356 | Human sorbitol dehydrogenase; NAD, oxidoreductase; | 94.86 | |
| 1kyq_A | 274 | Met8P, siroheme biosynthesis protein Met8; homodim | 94.84 | |
| 1mld_A | 314 | Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D | 94.8 | |
| 3rui_A | 340 | Ubiquitin-like modifier-activating enzyme ATG7; au | 94.8 | |
| 1iz0_A | 302 | Quinone oxidoreductase; APO-enzyme, riken structur | 94.79 | |
| 1oi7_A | 288 | Succinyl-COA synthetase alpha chain; SCS, ligase, | 94.77 | |
| 3e5r_O | 337 | PP38, glyceraldehyde-3-phosphate dehydrogenase, cy | 94.68 | |
| 3nrb_A | 287 | Formyltetrahydrofolate deformylase; N-terminal ACT | 94.65 | |
| 3fpc_A | 352 | NADP-dependent alcohol dehydrogenase; oxydoreducta | 94.64 | |
| 3uko_A | 378 | Alcohol dehydrogenase class-3; alcohol dehydrogena | 94.63 | |
| 3uog_A | 363 | Alcohol dehydrogenase; structural genomics, protei | 94.62 | |
| 1e3j_A | 352 | NADP(H)-dependent ketose reductase; oxidoreductase | 94.62 | |
| 3cps_A | 354 | Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, g | 94.61 | |
| 1obb_A | 480 | Maltase, alpha-glucosidase; glycosidase, sulfinic | 94.6 | |
| 3k92_A | 424 | NAD-GDH, NAD-specific glutamate dehydrogenase; ROC | 94.6 | |
| 1pqw_A | 198 | Polyketide synthase; rossmann fold, dimer, structu | 94.56 | |
| 2hcy_A | 347 | Alcohol dehydrogenase 1; tetramer of asymmetric di | 94.55 | |
| 2yfk_A | 418 | Aspartate/ornithine carbamoyltransferase; transcar | 94.54 | |
| 1u8s_A | 192 | Glycine cleavage system transcriptional repressor, | 94.54 | |
| 1vkn_A | 351 | N-acetyl-gamma-glutamyl-phosphate reductase; TM178 | 94.49 | |
| 2d4a_B | 308 | Malate dehydrogenase; archaea, hyperthermophIle, o | 94.42 | |
| 3keo_A | 212 | Redox-sensing transcriptional repressor REX; DNA b | 94.39 | |
| 1f8f_A | 371 | Benzyl alcohol dehydrogenase; rossmann fold, oxido | 94.37 | |
| 4e4t_A | 419 | Phosphoribosylaminoimidazole carboxylase, ATPase; | 94.37 | |
| 2xxj_A | 310 | L-LDH, L-lactate dehydrogenase; oxidoreductase, hy | 94.36 | |
| 2yyy_A | 343 | Glyceraldehyde-3-phosphate dehydrogenase; glyceral | 94.34 | |
| 2we8_A | 386 | Xanthine dehydrogenase; oxidoreductase; 2.30A {Myc | 94.32 | |
| 3h2s_A | 224 | Putative NADH-flavin reductase; Q03B84, NESG, LCR1 | 94.27 | |
| 3h9e_O | 346 | Glyceraldehyde-3-phosphate dehydrogenase, testis-; | 94.26 | |
| 3ip3_A | 337 | Oxidoreductase, putative; structural genomics, PSI | 94.24 | |
| 2h6e_A | 344 | ADH-4, D-arabinose 1-dehydrogenase; rossman fold, | 94.24 | |
| 3qvo_A | 236 | NMRA family protein; structural genomics, PSI-biol | 94.19 | |
| 2yfq_A | 421 | Padgh, NAD-GDH, NAD-specific glutamate dehydrogena | 94.18 | |
| 3vtf_A | 444 | UDP-glucose 6-dehydrogenase; two discrete alpha/be | 94.16 | |
| 3upl_A | 446 | Oxidoreductase; rossmann fold, NADPH binding; 1.50 | 94.12 | |
| 2fp4_A | 305 | Succinyl-COA ligase [GDP-forming] alpha-chain, mit | 94.12 | |
| 4f3y_A | 272 | DHPR, dihydrodipicolinate reductase; structural ge | 94.1 | |
| 3fi9_A | 343 | Malate dehydrogenase; structural genomics, oxidore | 94.06 | |
| 3tqh_A | 321 | Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella | 94.05 | |
| 4eye_A | 342 | Probable oxidoreductase; structural genomics, niai | 94.01 | |
| 2ep5_A | 350 | 350AA long hypothetical aspartate-semialdehyde deh | 94.01 | |
| 3oqb_A | 383 | Oxidoreductase; structural genomics, protein struc | 94.0 | |
| 3ius_A | 286 | Uncharacterized conserved protein; APC63810, silic | 93.99 | |
| 2ejw_A | 332 | HDH, homoserine dehydrogenase; NAD-dependent, oxid | 93.97 | |
| 1v9l_A | 421 | Glutamate dehydrogenase; protein-NAD complex, oxid | 93.89 | |
| 1lu9_A | 287 | Methylene tetrahydromethanopterin dehydrogenase; a | 93.85 | |
| 2vn8_A | 375 | Reticulon-4-interacting protein 1; mitochondrion, | 93.84 | |
| 1lnq_A | 336 | MTHK channels, potassium channel related protein; | 93.79 | |
| 3gms_A | 340 | Putative NADPH:quinone reductase; structural genom | 93.76 | |
| 2bma_A | 470 | Glutamate dehydrogenase (NADP+); malaria, drug des | 93.75 | |
| 3r6d_A | 221 | NAD-dependent epimerase/dehydratase; structural ge | 93.75 | |
| 3goh_A | 315 | Alcohol dehydrogenase, zinc-containing; NP_718042. | 93.73 | |
| 4dup_A | 353 | Quinone oxidoreductase; PSI-biology, structural ge | 93.63 | |
| 3fbg_A | 346 | Putative arginate lyase; structural genomics, unkn | 93.62 | |
| 1hdg_O | 332 | Holo-D-glyceraldehyde-3-phosphate dehydrogenase; o | 93.56 | |
| 4hv4_A | 494 | UDP-N-acetylmuramate--L-alanine ligase; MURC, yers | 93.54 | |
| 1v3u_A | 333 | Leukotriene B4 12- hydroxydehydrogenase/prostaglan | 93.46 | |
| 3ijp_A | 288 | DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, | 93.45 | |
| 1vj0_A | 380 | Alcohol dehydrogenase, zinc-containing; TM0436, st | 93.45 | |
| 3kzn_A | 359 | Aotcase, N-acetylornithine carbamoyltransferase; t | 93.43 | |
| 3dr3_A | 337 | N-acetyl-gamma-glutamyl-phosphate reductase; csgid | 93.42 | |
| 1hdo_A | 206 | Biliverdin IX beta reductase; foetal metabolism, H | 93.39 | |
| 3qwb_A | 334 | Probable quinone oxidoreductase; rossmann fold, qu | 93.38 | |
| 3jyn_A | 325 | Quinone oxidoreductase; rossmann fold, protein-NAD | 93.36 | |
| 3aoe_E | 419 | Glutamate dehydrogenase; rossmann fold, NADH, oxid | 93.36 | |
| 2c0c_A | 362 | Zinc binding alcohol dehydrogenase, domain contain | 93.3 | |
| 1u8x_X | 472 | Maltose-6'-phosphate glucosidase; structural genom | 93.29 | |
| 1o6z_A | 303 | MDH, malate dehydrogenase; halophilic, ION-binding | 93.29 | |
| 3vh1_A | 598 | Ubiquitin-like modifier-activating enzyme ATG7; au | 93.28 | |
| 4b7c_A | 336 | Probable oxidoreductase; NADP cofactor, rossmann f | 93.23 | |
| 4gsl_A | 615 | Ubiquitin-like modifier-activating enzyme ATG7; ub | 93.19 | |
| 1gad_O | 330 | D-glyceraldehyde-3-phosphate dehydrogenase; oxidor | 93.18 | |
| 3nv9_A | 487 | Malic enzyme; rossmann fold, oxidoreductase; 2.25A | 93.13 | |
| 2b5w_A | 357 | Glucose dehydrogenase; nucleotide binding motif, o | 93.13 | |
| 2dq4_A | 343 | L-threonine 3-dehydrogenase; NAD-dependent, oxidor | 93.13 | |
| 3dhn_A | 227 | NAD-dependent epimerase/dehydratase; reductase, PF | 93.11 | |
| 3q98_A | 399 | Transcarbamylase; rossmann fold, transferase; 2.00 | 93.1 | |
| 1smk_A | 326 | Malate dehydrogenase, glyoxysomal; tricarboxylic c | 92.99 | |
| 1u8s_A | 192 | Glycine cleavage system transcriptional repressor, | 92.98 | |
| 1kol_A | 398 | Formaldehyde dehydrogenase; oxidoreductase; HET: N | 92.91 | |
| 3hhp_A | 312 | Malate dehydrogenase; MDH, citric acid cycle, TCA | 92.86 | |
| 3ing_A | 325 | Homoserine dehydrogenase; NP_394635.1, structural | 92.79 | |
| 2j3h_A | 345 | NADP-dependent oxidoreductase P1; double bond redu | 92.79 | |
| 2x0j_A | 294 | Malate dehydrogenase; oxidoreductase, hyperthermop | 92.78 | |
| 3hn7_A | 524 | UDP-N-acetylmuramate-L-alanine ligase; ATP-binding | 92.73 | |
| 4ina_A | 405 | Saccharopine dehydrogenase; structural genomics, P | 92.69 | |
| 2eih_A | 343 | Alcohol dehydrogenase; zinc ION binding protein, s | 92.65 | |
| 3c8m_A | 331 | Homoserine dehydrogenase; structural genomics, APC | 92.56 | |
| 2x5o_A | 439 | UDP-N-acetylmuramoylalanine--D-glutamate ligase; A | 92.56 | |
| 1bgv_A | 449 | Glutamate dehydrogenase; oxidoreductase; HET: GLU; | 92.55 | |
| 1qor_A | 327 | Quinone oxidoreductase; HET: NAP; 2.20A {Escherich | 92.53 | |
| 1mv8_A | 436 | GMD, GDP-mannose 6-dehydrogenase; rossman fold, do | 92.53 | |
| 3cmc_O | 334 | GAPDH, glyceraldehyde-3-phosphate dehydrogenase; m | 92.53 | |
| 3mtj_A | 444 | Homoserine dehydrogenase; rossmann-fold, PSI, MCSG | 92.48 | |
| 2bka_A | 242 | CC3, TAT-interacting protein TIP30; NADPH, PEG600, | 92.45 | |
| 3on5_A | 362 | BH1974 protein; structural genomics, joint center | 92.43 | |
| 3oig_A | 266 | Enoyl-[acyl-carrier-protein] reductase [NADH]; fat | 92.41 | |
| 2dph_A | 398 | Formaldehyde dismutase; dismutation of aldehydes, | 92.4 | |
| 3gqv_A | 371 | Enoyl reductase; medium-chain reductase (MDR super | 92.35 | |
| 2nyi_A | 195 | Unknown protein; protein structure initiative, PSI | 92.32 | |
| 1ebf_A | 358 | Homoserine dehydrogenase; dinucleotide, NAD, dimer | 92.24 | |
| 1xq6_A | 253 | Unknown protein; structural genomics, protein stru | 92.15 | |
| 1xgk_A | 352 | Nitrogen metabolite repression regulator NMRA; ros | 92.12 | |
| 3pi7_A | 349 | NADH oxidoreductase; groes-like fold, NAD(P)-bindi | 92.04 | |
| 4id9_A | 347 | Short-chain dehydrogenase/reductase; putative dehy | 91.97 | |
| 4dvj_A | 363 | Putative zinc-dependent alcohol dehydrogenase Pro; | 91.97 | |
| 3dqp_A | 219 | Oxidoreductase YLBE; alpha-beta protein., structur | 91.93 | |
| 3jv7_A | 345 | ADH-A; dehydrogenase, nucleotide binding, rossmann | 91.93 | |
| 1s6y_A | 450 | 6-phospho-beta-glucosidase; hydrolase, structural | 91.89 | |
| 1dih_A | 273 | Dihydrodipicolinate reductase; oxidoreductase; HET | 91.88 | |
| 3gpi_A | 286 | NAD-dependent epimerase/dehydratase; structural ge | 91.86 | |
| 2j8z_A | 354 | Quinone oxidoreductase; medium-chain dehydrogenase | 91.76 | |
| 2f06_A | 144 | Conserved hypothetical protein; structural genomic | 91.72 | |
| 3nkl_A | 141 | UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fo | 91.71 | |
| 3hsk_A | 381 | Aspartate-semialdehyde dehydrogenase; candida albi | 91.68 | |
| 4g65_A | 461 | TRK system potassium uptake protein TRKA; structur | 91.67 | |
| 1qyc_A | 308 | Phenylcoumaran benzylic ether reductase PT1; NADPH | 91.66 | |
| 2wm3_A | 299 | NMRA-like family domain containing protein 1; unkn | 91.59 | |
| 1wly_A | 333 | CAAR, 2-haloacrylate reductase; NADPH-dependent ox | 91.57 | |
| 2ph5_A | 480 | Homospermidine synthase; alpha-beta protein, struc | 91.56 | |
| 3ff4_A | 122 | Uncharacterized protein; structural genomics, PSI- | 91.51 | |
| 2r00_A | 336 | Aspartate-semialdehyde dehydrogenase; conformation | 91.49 | |
| 1jvb_A | 347 | NAD(H)-dependent alcohol dehydrogenase; archaeon, | 91.48 | |
| 2rir_A | 300 | Dipicolinate synthase, A chain; structural genomic | 91.45 | |
| 4a0s_A | 447 | Octenoyl-COA reductase/carboxylase; oxidoreductase | 91.28 | |
| 2zcu_A | 286 | Uncharacterized oxidoreductase YTFG; alpha-beta sa | 91.25 | |
| 2yv1_A | 294 | Succinyl-COA ligase [ADP-forming] subunit alpha; C | 91.22 | |
| 1p3d_A | 475 | UDP-N-acetylmuramate--alanine ligase; alpha/beta p | 91.12 | |
| 3ruf_A | 351 | WBGU; rossmann fold, UDP-hexose 4-epimerase, isome | 91.09 | |
| 2gas_A | 307 | Isoflavone reductase; NADPH-dependent reductase, o | 91.06 | |
| 3r3j_A | 456 | Glutamate dehydrogenase; rossman fold, oxidoreduct | 90.99 | |
| 4dpk_A | 359 | Malonyl-COA/succinyl-COA reductase; dinucleotide b | 90.9 | |
| 4dpl_A | 359 | Malonyl-COA/succinyl-COA reductase; dinucleotide b | 90.9 | |
| 2x5j_O | 339 | E4PDH, D-erythrose-4-phosphate dehydrogenase; oxid | 90.85 |
| >1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-100 Score=850.87 Aligned_cols=525 Identities=36% Similarity=0.551 Sum_probs=495.3
Q ss_pred CCCCeEEEecCCCHhHHHHhcccCcEEEccCCCHhHHhhhcCCceEEEEcCCCCCCHHHHhccCCCceEEEEcCcccCcc
Q 007512 56 SSKPTVLIAEKLGQAGLDLLNEFANVDCAYNLSPEELCTKISLCDALIVRSGTKVNRDVFESSAGRLKVVGRAGVGIDNV 135 (600)
Q Consensus 56 ~~~~~ilv~~~l~~~~~~~l~~~~~v~~~~~~~~~el~~~i~~~d~li~~~~~~~~~~~l~~~~~~Lk~I~~~g~G~d~i 135 (600)
|.|||||+++++.++..+.|++..++++....+++++.+.++++|++++++.+++++++++++ |+||||+++|+|+|||
T Consensus 2 m~~~~vl~~~~~~~~~~~~l~~~~~v~~~~~~~~~~~~~~~~~~d~li~~~~~~~~~~~l~~~-~~Lk~i~~~~~G~d~i 80 (529)
T 1ygy_A 2 VSLPVVLIADKLAPSTVAALGDQVEVRWVDGPDRDKLLAAVPEADALLVRSATTVDAEVLAAA-PKLKIVARAGVGLDNV 80 (529)
T ss_dssp -CCCEEEECSSCCGGGGTTSCSSSEEEECCTTSHHHHHHHGGGCSEEEECSSSCBCHHHHHTC-TTCCEEEESSSCCTTB
T ss_pred CCCcEEEEeCCCCHHHHHHHhcCceEEEcCCCCHHHHHHHhcCCEEEEEcCCCCCCHHHHhhC-CCCcEEEECCcCcCcc
Confidence 567899999999999999888767787766778899999999999999999899999999987 6999999999999999
Q ss_pred ChhHHHhCCceeecCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCccccccccceeccCCEEEEEecChhHHHHHHH
Q 007512 136 DLAAATEFGCLVVNAPTANTVAAAEHGIALLAAMARNVAQADASVKAGKWQRNKYVGVSLVGKTLAVLGFGKVGSEVARR 215 (600)
Q Consensus 136 D~~aa~~~GI~V~n~p~~~~~~vAE~~l~lll~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktiGIIGlG~IG~~vA~~ 215 (600)
|+++|+++||.|+|+|++|+.+||||++++||+++|+++++++.+++|+|.+..+.|.+|+|+||||||+|+||+++|++
T Consensus 81 d~~~~~~~gi~v~n~p~~~~~~vAE~~~~~~l~~~R~~~~~~~~~~~g~w~~~~~~~~~l~g~~vgIIG~G~IG~~vA~~ 160 (529)
T 1ygy_A 81 DVDAATARGVLVVNAPTSNIHSAAEHALALLLAASRQIPAADASLREHTWKRSSFSGTEIFGKTVGVVGLGRIGQLVAQR 160 (529)
T ss_dssp CHHHHHHTTCEEECCTTSSHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCGGGCCBCCCTTCEEEEECCSHHHHHHHHH
T ss_pred CHhHHHhCCeEEEECCCcchHHHHHHHHHHHHHHHhhhHHHHHHHHhCCCcccCcCccccCCCEEEEEeeCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999887778999999999999999999999999
Q ss_pred hhcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEecCCCccccccccHhHhccCCCceEEEEccCCccccHH
Q 007512 216 AKGLGMHVIAHDPYAPADRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVIDEE 295 (600)
Q Consensus 216 l~~~g~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Pl~~~t~~li~~~~l~~mk~gailvNvarg~ivde~ 295 (600)
|+++||+|++|||+.+.+.+.+.|+..+++++++++||+|++|+|++++|+++++++.++.||+|+++||++||+++|++
T Consensus 161 l~~~G~~V~~~d~~~~~~~a~~~g~~~~~l~e~~~~aDvV~l~~P~~~~t~~~i~~~~~~~~k~g~ilin~arg~iv~~~ 240 (529)
T 1ygy_A 161 IAAFGAYVVAYDPYVSPARAAQLGIELLSLDDLLARADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAARGGLVDEA 240 (529)
T ss_dssp HHTTTCEEEEECTTSCHHHHHHHTCEECCHHHHHHHCSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEEECSCTTSBCHH
T ss_pred HHhCCCEEEEECCCCChhHHHhcCcEEcCHHHHHhcCCEEEECCCCchHHHHHhCHHHHhCCCCCCEEEECCCCchhhHH
Confidence 99999999999998877777788988779999999999999999999999999999899999999999999999999999
Q ss_pred HHHHhHhcCCceEEEEeccCCCCCCCCCccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCccccCCCCC
Q 007512 296 ALVRALDSGRVAQAALDVFTEEPPPADSKLVQHERVTVTPHLGASTMEAQEGVAIEIAEAVVGALKGELAATAVNAPMVP 375 (600)
Q Consensus 296 aL~~aL~~g~i~ga~lDv~~~EP~~~~~~L~~~~nvilTPH~~~~t~ea~~~~~~~~~~~l~~~l~g~~~~~~vn~~~i~ 375 (600)
+|+++|++|+++||++|||+.||+ +++|||+++||++|||++++|.|++++++..+++++.+++.|..+.+.||.+.
T Consensus 241 aL~~al~~g~i~ga~lDv~~~eP~-~~~~L~~~~~vilTPh~~~~t~ea~~~~~~~~~~~l~~~l~~~~~~~~v~~~~-- 317 (529)
T 1ygy_A 241 ALADAITGGHVRAAGLDVFATEPC-TDSPLFELAQVVVTPHLGASTAEAQDRAGTDVAESVRLALAGEFVPDAVNVGG-- 317 (529)
T ss_dssp HHHHHHHTSSEEEEEESSCSSSSC-SCCGGGGCTTEEECSSCSSCBHHHHHHHHHHHHHHHHHHHTTCCCTTBCSCCS--
T ss_pred HHHHHHHcCCccEEEEeeccCCCC-CCchHHhCCCEEEccccCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcccCCcc--
Confidence 999999999999999999999996 68999999999999999999999999999999999999999999888888664
Q ss_pred hhhhhcccchHHHHHHHHHHHHHHhcCCCCceEEEEEEeecCCCCccccccccHHHHHhhchhhhccchhhccHHHHHhh
Q 007512 376 AEVLTELKPFVELAEKLGRLAVQLVAGGSGVKTVKVSYASSRAPDDLDTRLLRAMITKGLIEPISDVFVNLVNADYTAKQ 455 (600)
Q Consensus 376 ~~~~~~~~p~~~la~~lG~l~~qL~~g~~~~k~v~i~~~Gs~a~~~~~~~~~~~a~l~GlL~~~~~~~vn~vnA~~~A~e 455 (600)
++..+.+.||+.|++++|+++.||++| +|++++++|+|+++ + .+++++|+++++|+|+.+.++.+|++||+.+|++
T Consensus 318 ~~~hd~i~P~l~La~~lg~~~~qla~g--~~~ditria~G~~~-~-~~i~~~n~a~l~g~L~~~~~~~~~~vnA~~iA~e 393 (529)
T 1ygy_A 318 GVVNEEVAPWLDLVRKLGVLAGVLSDE--LPVSLSVQVRGELA-A-EEVEVLRLSALRGLFSAVIEDAVTFVNAPALAAE 393 (529)
T ss_dssp TTSCTTTTTHHHHHHHHHHHHHHTSSS--CCSEEEEEEEEGGG-G-SCCHHHHHHHHHHHTGGGSCTTCCCCCHHHHHHH
T ss_pred cccchhhhhHHHHHHHHHHHHHHHhCC--CceEEEEEEEeecc-c-cCCcHHHHHHHHHhcCCCCCCCccccCHHHHHHH
Confidence 666788889999999999999999999 89999999999998 7 6799999999999999999888999999999999
Q ss_pred cCceEEEEEeecCCCCCCCCceEEEEEeecccccccccCCCcEEEEEEEEeC--CceEEEEEcceEEEeecCccEEEEEe
Q 007512 456 RGLRLTEERILLDGSPESPLEFIQVQIANVESKFASAISESGEIKVEGRVKD--GVPHLTKVGSFEVDVSLEGSIILCRQ 533 (600)
Q Consensus 456 ~GI~v~~~~~~~~~~~~~~~n~i~v~~~~~~~~~~~~~~~~~~~~v~Gsv~g--G~~~I~~Idgf~v~~~g~~~~Liv~~ 533 (600)
+||.++|.+.+... .|+|++++++++ .++++++|.|+++| |.++|++||||++++.|++|+|++.|
T Consensus 394 ~Gi~i~~~~~~~~~---~~~n~v~v~~~~---------~~~~~~~v~Gt~~gg~g~~~i~~i~g~~v~~~~~~~~l~v~~ 461 (529)
T 1ygy_A 394 RGVTAEICKASESP---NHRSVVDVRAVG---------ADGSVVTVSGTLYGPQLSQKIVQINGRHFDLRAQGINLIIHY 461 (529)
T ss_dssp HSCEEEEEEESCCS---SSSEEEEEEEEC---------TTSCEEEEEEEEETTTTEEEEEEETTEEEEEESCSEEEEEEE
T ss_pred cCCEEEEEEccCCC---CCCCEEEEEEEE---------CCCCEEEEEEEEeCCCCcEEEEEECCEEEEecCCccEEEEEc
Confidence 99999998876443 799999999973 37889999997665 58999999999999999999999999
Q ss_pred cCCCCChhhHHhhhhcCCccccceEeeeecCCCcEEEEEEeCCCCcHHHHHHHhcCCCcceEEEeeC
Q 007512 534 VDQPGMIGTVGSILGSENVNVSFMSVGRVAPRKHAVMAIGVDEQPRKETLKKIGDVPAIEEFVFLKL 600 (600)
Q Consensus 534 ~D~pG~Ia~V~~iL~~~~INIa~m~v~R~~~g~~al~~i~~D~~~~~~~l~~l~~~~~v~~v~~i~l 600 (600)
+|+||+|++|+++|++++|||++|+++|..+++.|+|+|++|++++++++++|+++|+|.++++++|
T Consensus 462 ~D~PG~I~~v~~~Lg~~~INIa~m~v~r~~~~~~a~~~i~vd~~~~~~~l~~l~~~~~i~~v~~v~~ 528 (529)
T 1ygy_A 462 VDRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPGATILLRLDQDVPDDVRTAIAAAVDAYKLEVVDL 528 (529)
T ss_dssp SCCTTHHHHHHHHHHHTTCCEEEEEEEECSSSSCEEEEEEESSCCCHHHHHHHHHHHTEEEEEEEEC
T ss_pred CCCCchHHHHHHHHHhcCCCeeeEEEecCCCCCEEEEEEEECCCCCHHHHHHHhcCCCccEEEEEec
Confidence 9999999999999999999999999999999999999999999999999999999999999999975
|
| >1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-77 Score=641.76 Aligned_cols=392 Identities=29% Similarity=0.417 Sum_probs=348.9
Q ss_pred CCCCeEEEecCCCHhHHHHhccc-C-cEEEcc-CCCHhHHhhhcCCceEEEEcCCCCCCHHHHhccCCCceEEEEcCccc
Q 007512 56 SSKPTVLIAEKLGQAGLDLLNEF-A-NVDCAY-NLSPEELCTKISLCDALIVRSGTKVNRDVFESSAGRLKVVGRAGVGI 132 (600)
Q Consensus 56 ~~~~~ilv~~~l~~~~~~~l~~~-~-~v~~~~-~~~~~el~~~i~~~d~li~~~~~~~~~~~l~~~~~~Lk~I~~~g~G~ 132 (600)
+.|+|||+++.+.+.+++.|++. . ++.+.. .++++++.+.++++|++++++.+++++++++++ |+||+|+++|+|+
T Consensus 2 ~~~~kil~~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~l~~~~~~~d~l~~~~~~~~~~~~l~~~-~~Lk~I~~~~~G~ 80 (404)
T 1sc6_A 2 KDKIKFLLVEGVHQKALESLRAAGYTNIEFHKGALDDEQLKESIRDAHFIGLRSRTHLTEDVINAA-EKLVAIGAFAIGT 80 (404)
T ss_dssp CSSCCEEECSCCCHHHHHHHHHTTCCCEEECSSCCCHHHHHHHTTSCSEEEECSSCCBCHHHHHHC-SSCCEEEECSSCC
T ss_pred CCceEEEEeCCCCHHHHHHHHhCCCcEEEEcCCCCCHHHHHHHhcCCeEEEEcCCCCCCHHHHhhC-CCCcEEEECCccc
Confidence 35789999999999999999875 3 676643 568899999999999999999899999999997 6999999999999
Q ss_pred CccChhHHHhCCceeecCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCccccccccceeccCCEEEEEecChhHHHH
Q 007512 133 DNVDLAAATEFGCLVVNAPTANTVAAAEHGIALLAAMARNVAQADASVKAGKWQRNKYVGVSLVGKTLAVLGFGKVGSEV 212 (600)
Q Consensus 133 d~iD~~aa~~~GI~V~n~p~~~~~~vAE~~l~lll~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktiGIIGlG~IG~~v 212 (600)
||||+++|+++||.|+|+|++|+.+||||++++||+++|+++++++.+++|+|.+..+.|.+|+|||+||||+|+||+.+
T Consensus 81 d~iD~~~a~~~GI~V~n~p~~n~~~vAE~~~~~~L~~~R~i~~~~~~~~~g~W~~~~~~~~el~gktlGiIGlG~IG~~v 160 (404)
T 1sc6_A 81 NQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRGVPEANAKAHRGVGNKLAAGSFEARGKKLGIIGYGHIGTQL 160 (404)
T ss_dssp TTBCHHHHHHTTCCEECCTTTTHHHHHHHHHHHHHHHHHTHHHHHHHHHHTCCC-----CCCSTTCEEEEECCSHHHHHH
T ss_pred CccCHHHHHhCCCEEEecCcccHHHHHHHHHHHHHHHHhChHHHHHHHHcCCccccCCCccccCCCEEEEEeECHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999877677899999999999999999999
Q ss_pred HHHhhcCCCEEEEECCCCChhHHHHcCCccc-CHHHHhccCCEEEEecCCCccccccccHhHhccCCCceEEEEccCCcc
Q 007512 213 ARRAKGLGMHVIAHDPYAPADRARAIGVDLV-SFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGV 291 (600)
Q Consensus 213 A~~l~~~g~~V~~~d~~~~~~~a~~~g~~~~-~l~ell~~aDvV~l~~Pl~~~t~~li~~~~l~~mk~gailvNvarg~i 291 (600)
|+++++|||+|++|||+.... ..++... ++++++++||+|++|+|++++|+++++++.|++||+|++|||+|||++
T Consensus 161 A~~l~~~G~~V~~~d~~~~~~---~~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~ga~lIN~aRg~~ 237 (404)
T 1sc6_A 161 GILAESLGMYVYFYDIENKLP---LGNATQVQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTV 237 (404)
T ss_dssp HHHHHHTTCEEEEECSSCCCC---CTTCEECSCHHHHHHHCSEEEECCCSSTTTTTCBCHHHHHHSCTTEEEEECSCSSS
T ss_pred HHHHHHCCCEEEEEcCCchhc---cCCceecCCHHHHHhcCCEEEEccCCChHHHHHhhHHHHhhcCCCeEEEECCCChH
Confidence 999999999999999976321 1134444 899999999999999999999999999999999999999999999999
Q ss_pred ccHHHHHHhHhcCCceEEEEeccCCCCCCC----CCccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCc
Q 007512 292 IDEEALVRALDSGRVAQAALDVFTEEPPPA----DSKLVQHERVTVTPHLGASTMEAQEGVAIEIAEAVVGALKGELAAT 367 (600)
Q Consensus 292 vde~aL~~aL~~g~i~ga~lDv~~~EP~~~----~~~L~~~~nvilTPH~~~~t~ea~~~~~~~~~~~l~~~l~g~~~~~ 367 (600)
+|+++|+++|++|+++||++|||+.||++. ++|||++||+++|||+|++|.|++++++..+++|+.+|++|+.+.+
T Consensus 238 vd~~aL~~aL~~g~i~gA~lDVf~~EP~~~~~~~~~pL~~~~nvilTPHi~~~T~ea~~~~~~~~~~nl~~~l~g~~~~~ 317 (404)
T 1sc6_A 238 VDIPALADALASKHLAGAAIDVFPTEPATNSDPFTSPLAEFDNVLLTPHIGGSTQEAQENIGLEVAGKLIKYSDNGSTLS 317 (404)
T ss_dssp BCHHHHHHHHHTTSEEEEEEEC---------CTTTGGGTTCTTEEEECCCSCCSHHHHHHHHHHHHHHHHHHHHHCCCTT
T ss_pred HhHHHHHHHHHcCCccEEEEeecCCCCCCccccccchhhcCCCEEECCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCcc
Confidence 999999999999999999999999999864 5799999999999999999999999999999999999999999999
Q ss_pred cccCCCCChhhhhcccchHHHHHHHHHHHHHHhcCCCCceEEEEEEeecCCCCccccccccHHHHHhhchhhhccchhhc
Q 007512 368 AVNAPMVPAEVLTELKPFVELAEKLGRLAVQLVAGGSGVKTVKVSYASSRAPDDLDTRLLRAMITKGLIEPISDVFVNLV 447 (600)
Q Consensus 368 ~vn~~~i~~~~~~~~~p~~~la~~lG~l~~qL~~g~~~~k~v~i~~~Gs~a~~~~~~~~~~~a~l~GlL~~~~~~~vn~v 447 (600)
.||.|.+. +.
T Consensus 318 ~vn~p~~~-----------------------------------------~~----------------------------- 327 (404)
T 1sc6_A 318 AVNFPEVS-----------------------------------------LP----------------------------- 327 (404)
T ss_dssp BSSSCCCC-----------------------------------------CC-----------------------------
T ss_pred eecccccc-----------------------------------------cC-----------------------------
Confidence 99988655 00
Q ss_pred cHHHHHhhcCceEEEEEeecCCCCCCCCceEEEEEeecccccccccCCCcEEEEEEEEeCCceEEEEEcceEEEeecCcc
Q 007512 448 NADYTAKQRGLRLTEERILLDGSPESPLEFIQVQIANVESKFASAISESGEIKVEGRVKDGVPHLTKVGSFEVDVSLEGS 527 (600)
Q Consensus 448 nA~~~A~e~GI~v~~~~~~~~~~~~~~~n~i~v~~~~~~~~~~~~~~~~~~~~v~Gsv~gG~~~I~~Idgf~v~~~g~~~ 527 (600)
. . | .+
T Consensus 328 ---------------------~---~--~-------------------------------------------------~~ 332 (404)
T 1sc6_A 328 ---------------------L---H--G-------------------------------------------------GR 332 (404)
T ss_dssp ---------------------C---C--S-------------------------------------------------SE
T ss_pred ---------------------c---C--C-------------------------------------------------cc
Confidence 0 0 0 23
Q ss_pred EEEEEecCCCCChhhHHhhhhcCCccccceEeeeecCCCcEEEEEEeCCC--CcHHHHHHHhcCCCcceEEEe
Q 007512 528 IILCRQVDQPGMIGTVGSILGSENVNVSFMSVGRVAPRKHAVMAIGVDEQ--PRKETLKKIGDVPAIEEFVFL 598 (600)
Q Consensus 528 ~Liv~~~D~pG~Ia~V~~iL~~~~INIa~m~v~R~~~g~~al~~i~~D~~--~~~~~l~~l~~~~~v~~v~~i 598 (600)
.|++.|+|+||+|+.|+++|+++||||++|++.| +|+.|+|++++|++ ++++++++|++++++.+++++
T Consensus 333 rl~~~h~d~PGvi~~i~~iL~~~~iNIa~m~~~r--~g~~A~~vidvD~~~~~~~~~l~~l~~i~~v~~vr~l 403 (404)
T 1sc6_A 333 RLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQT--SAQMGYVVIDIEADEDVAEKALQAMKAIPGTIRARLL 403 (404)
T ss_dssp EEEEEEESCTTHHHHHHHHHHHTTCEEEEEEEEE--CSSEEEEEEEEECCHHHHHHHHHHHHTSTTEEEEEEC
T ss_pred eEEEEeCCCCCHHHHHHHHHHHcCCCHHHhhccC--CCCEEEEEEEcCCCCCCCHHHHHHHhcCCCeeEEEEe
Confidence 4778899999999999999999999999999998 88999999999999 999999999999999999986
|
| >3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-70 Score=590.61 Aligned_cols=396 Identities=31% Similarity=0.457 Sum_probs=349.3
Q ss_pred CCCCCCCeEEEecCCCHhHHHHhcccC--cEEEc-cCCCHhHHhhhcCCceEEEEcCCCCCCHHHHhccCCCceEEEEcC
Q 007512 53 DGISSKPTVLIAEKLGQAGLDLLNEFA--NVDCA-YNLSPEELCTKISLCDALIVRSGTKVNRDVFESSAGRLKVVGRAG 129 (600)
Q Consensus 53 ~~~~~~~~ilv~~~l~~~~~~~l~~~~--~v~~~-~~~~~~el~~~i~~~d~li~~~~~~~~~~~l~~~~~~Lk~I~~~g 129 (600)
|-++.|+|||+++.+++.+.+.|++.+ ++.+. ..++++++.+.++++|++++++.+++++++|+++ |+||+|+++|
T Consensus 10 ~~~~~~~kIl~~~~i~~~~~~~l~~~g~~~v~~~~~~~~~~~l~~~~~~~d~l~v~~~~~i~~~~l~~~-p~Lk~I~~~~ 88 (416)
T 3k5p_A 10 SLSRDRINVLLLEGISQTAVEYFKSSGYTNVTHLPKALDKADLIKAISSAHIIGIRSRTQLTEEIFAAA-NRLIAVGCFS 88 (416)
T ss_dssp --CGGGSCEEECSCCCHHHHHHHHHTTCCCEEECSSCCCHHHHHHHHTTCSEEEECSSCCBCHHHHHHC-TTCCEEEECS
T ss_pred CCCCCCcEEEEECCCCHHHHHHHHHCCCcEEEECCCCCCHHHHHHHccCCEEEEEcCCCCCCHHHHHhC-CCcEEEEECc
Confidence 345668999999999999999998754 67654 3468899999999999999999899999999997 6999999999
Q ss_pred cccCccChhHHHhCCceeecCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCccccccccceeccCCEEEEEecChhH
Q 007512 130 VGIDNVDLAAATEFGCLVVNAPTANTVAAAEHGIALLAAMARNVAQADASVKAGKWQRNKYVGVSLVGKTLAVLGFGKVG 209 (600)
Q Consensus 130 ~G~d~iD~~aa~~~GI~V~n~p~~~~~~vAE~~l~lll~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktiGIIGlG~IG 209 (600)
+|+||||+++|+++||.|+|+|++|+.+||||+++++|+++|+++++++.+++|+|.+..+.+.+++|||+||||+|+||
T Consensus 89 ~G~d~IDl~~a~~~GI~V~n~p~~n~~aVAE~~l~l~L~l~R~i~~~~~~~~~g~W~~~~~~~~el~gktvGIIGlG~IG 168 (416)
T 3k5p_A 89 VGTNQVELKAARKRGIPVFNAPFSNTRSVAELVIGEIIMLMRRIFPRSVSAHAGGWEKTAIGSREVRGKTLGIVGYGNIG 168 (416)
T ss_dssp SCCTTBCHHHHHHTTCCEECCSSTTHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCCTTCCCSTTCEEEEECCSHHH
T ss_pred cccCccCHHHHHhcCcEEEeCCCcccHHHHHHHHHHHHHHhcccHHHHHhhhcccccccCCCCccCCCCEEEEEeeCHHH
Confidence 99999999999999999999999999999999999999999999999999999999987777899999999999999999
Q ss_pred HHHHHHhhcCCCEEEEECCCCChhHHHHcCC-cccCHHHHhccCCEEEEecCCCccccccccHhHhccCCCceEEEEccC
Q 007512 210 SEVARRAKGLGMHVIAHDPYAPADRARAIGV-DLVSFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVAR 288 (600)
Q Consensus 210 ~~vA~~l~~~g~~V~~~d~~~~~~~a~~~g~-~~~~l~ell~~aDvV~l~~Pl~~~t~~li~~~~l~~mk~gailvNvar 288 (600)
+.+|+++++|||+|++||++..... .+. ...++++++++||+|++|+|++++|+++++++.|++||+|++|||+||
T Consensus 169 ~~vA~~l~~~G~~V~~yd~~~~~~~---~~~~~~~sl~ell~~aDvV~lhvPlt~~T~~li~~~~l~~mk~gailIN~aR 245 (416)
T 3k5p_A 169 SQVGNLAESLGMTVRYYDTSDKLQY---GNVKPAASLDELLKTSDVVSLHVPSSKSTSKLITEAKLRKMKKGAFLINNAR 245 (416)
T ss_dssp HHHHHHHHHTTCEEEEECTTCCCCB---TTBEECSSHHHHHHHCSEEEECCCC-----CCBCHHHHHHSCTTEEEEECSC
T ss_pred HHHHHHHHHCCCEEEEECCcchhcc---cCcEecCCHHHHHhhCCEEEEeCCCCHHHhhhcCHHHHhhCCCCcEEEECCC
Confidence 9999999999999999998753211 122 245899999999999999999999999999999999999999999999
Q ss_pred CccccHHHHHHhHhcCCceEEEEeccCCCCCCCC----CccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCC
Q 007512 289 GGVIDEEALVRALDSGRVAQAALDVFTEEPPPAD----SKLVQHERVTVTPHLGASTMEAQEGVAIEIAEAVVGALKGEL 364 (600)
Q Consensus 289 g~ivde~aL~~aL~~g~i~ga~lDv~~~EP~~~~----~~L~~~~nvilTPH~~~~t~ea~~~~~~~~~~~l~~~l~g~~ 364 (600)
|+++|+++|+++|++|+++||++|||+.||++.+ +|||++||+++|||+|++|.|++++++..+++++.+|++++.
T Consensus 246 G~vvd~~aL~~aL~~g~i~gAalDVf~~EP~~~~~~~~~pL~~~~nvilTPHig~~T~ea~~~~~~~~~~nl~~~l~~g~ 325 (416)
T 3k5p_A 246 GSDVDLEALAKVLQEGHLAGAAIDVFPVEPASNGERFSTPLQGLENVILTPHIGGSTEEAQERIGTEVTRKLVEYSDVGS 325 (416)
T ss_dssp TTSBCHHHHHHHHHTTSEEEEEECCCSSCCSSTTSCCCCTTTTCTTEEECCSCTTCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred ChhhhHHHHHHHHHcCCccEEEeCCCCCCCCCcccccchhHhcCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHHhhCC
Confidence 9999999999999999999999999999998765 799999999999999999999999999999999999998888
Q ss_pred CCccccCCCCChhhhhcccchHHHHHHHHHHHHHHhcCCCCceEEEEEEeecCCCCccccccccHHHHHhhchhhhccch
Q 007512 365 AATAVNAPMVPAEVLTELKPFVELAEKLGRLAVQLVAGGSGVKTVKVSYASSRAPDDLDTRLLRAMITKGLIEPISDVFV 444 (600)
Q Consensus 365 ~~~~vn~~~i~~~~~~~~~p~~~la~~lG~l~~qL~~g~~~~k~v~i~~~Gs~a~~~~~~~~~~~a~l~GlL~~~~~~~v 444 (600)
+.+.||.|.+.. |
T Consensus 326 ~~~~Vn~p~~~~-------~------------------------------------------------------------ 338 (416)
T 3k5p_A 326 TVGAVNFPQVQL-------P------------------------------------------------------------ 338 (416)
T ss_dssp CTTBSSSCCCCC-------C------------------------------------------------------------
T ss_pred CCceeeCCCcCC-------C------------------------------------------------------------
Confidence 888887542210 0
Q ss_pred hhccHHHHHhhcCceEEEEEeecCCCCCCCCceEEEEEeecccccccccCCCcEEEEEEEEeCCceEEEEEcceEEEeec
Q 007512 445 NLVNADYTAKQRGLRLTEERILLDGSPESPLEFIQVQIANVESKFASAISESGEIKVEGRVKDGVPHLTKVGSFEVDVSL 524 (600)
Q Consensus 445 n~vnA~~~A~e~GI~v~~~~~~~~~~~~~~~n~i~v~~~~~~~~~~~~~~~~~~~~v~Gsv~gG~~~I~~Idgf~v~~~g 524 (600)
.. + +
T Consensus 339 -------------------~~--~-------~------------------------------------------------ 342 (416)
T 3k5p_A 339 -------------------PR--P-------T------------------------------------------------ 342 (416)
T ss_dssp -------------------CC--S-------S------------------------------------------------
T ss_pred -------------------CC--C-------C------------------------------------------------
Confidence 00 0 1
Q ss_pred CccEEEEEecCCCCChhhHHhhhhcCCccccceEeeeecCCCcEEEEEEeC--CCCcHHHHHHHhcCCCcceEEEe
Q 007512 525 EGSIILCRQVDQPGMIGTVGSILGSENVNVSFMSVGRVAPRKHAVMAIGVD--EQPRKETLKKIGDVPAIEEFVFL 598 (600)
Q Consensus 525 ~~~~Liv~~~D~pG~Ia~V~~iL~~~~INIa~m~v~R~~~g~~al~~i~~D--~~~~~~~l~~l~~~~~v~~v~~i 598 (600)
.+-+.+.|+++|||++.|.++|+++||||.+|... .+|+.|..++.+| ++.+++++++|++++++..+|++
T Consensus 343 -~~r~~~~h~n~p~~~~~i~~~~~~~~~ni~~~~~~--~~~~~~y~~~d~~~~~~~~~~~~~~l~~~~~~~~~r~~ 415 (416)
T 3k5p_A 343 -GTRFMHVHENRPGILNSLMNVFSHHHINIASQFLQ--TDGEVGYLVMEADGVGEASDAVLQEIREIPGTIRARLL 415 (416)
T ss_dssp -SEEEEEEECCCTTHHHHHHHHHHHTTCCEEEEEEE--ECSSCEEEEEEECCCHHHHHHHHHHHHTSTTEEEEEEE
T ss_pred -ceEEEEEecCCccHHHHHHHHHHHcCCCHHHHhcc--CCCceEEEEEEecCCCCCcHHHHHHHHhCCCEEEEEEe
Confidence 12244679999999999999999999999999874 6788899999999 88899999999999999999986
|
| >4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-67 Score=556.19 Aligned_cols=312 Identities=24% Similarity=0.454 Sum_probs=290.8
Q ss_pred CCCCeEEEecCCCHhHHHHhcccCcEEEcc---CCCHhHHhhhcCCceEEEEcCCCCCCHHHHhccCCCceEEEEcCccc
Q 007512 56 SSKPTVLIAEKLGQAGLDLLNEFANVDCAY---NLSPEELCTKISLCDALIVRSGTKVNRDVFESSAGRLKVVGRAGVGI 132 (600)
Q Consensus 56 ~~~~~ilv~~~l~~~~~~~l~~~~~v~~~~---~~~~~el~~~i~~~d~li~~~~~~~~~~~l~~~~~~Lk~I~~~g~G~ 132 (600)
+.|||||++++++++.++.|++.+++.+.. .++++++.+.++++|++++++.++++++++++++|+||+|+++|+|+
T Consensus 26 ~~~~kvlv~~~~~~~~~~~l~~~~~v~~~~~~~~~~~~~l~~~~~~~d~li~~~~~~i~~~~l~~~~~~Lk~I~~~~~G~ 105 (345)
T 4g2n_A 26 HPIQKAFLCRRFTPAIEAELRQRFDLEVNLEDTVLTPSGIASRAHGAEVLFVTATEAITAEVIRKLQPGLKTIATLSVGY 105 (345)
T ss_dssp -CCCEEEESSCCCHHHHHHHHHHSEEEECTTCCCCCHHHHHHHTTTCSEEEECTTSCBCHHHHHHTTTTCCEEEESSSCC
T ss_pred CCCCEEEEeCCCCHHHHHHHHccCCEEEecCCCCCCHHHHHHHhcCCeEEEEeCCCCCCHHHHHhhcCCceEEEEcCCcc
Confidence 568999999999999999999888887642 46789999999999999998878999999998756999999999999
Q ss_pred CccChhHHHhCCceeecCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCccccc---cccceeccCCEEEEEecChhH
Q 007512 133 DNVDLAAATEFGCLVVNAPTANTVAAAEHGIALLAAMARNVAQADASVKAGKWQRN---KYVGVSLVGKTLAVLGFGKVG 209 (600)
Q Consensus 133 d~iD~~aa~~~GI~V~n~p~~~~~~vAE~~l~lll~~~R~i~~~~~~~~~g~W~~~---~~~g~~l~gktiGIIGlG~IG 209 (600)
||||+++|+++||.|+|+||+++.+||||++++||+++|+++++++.+++|+|.+. .+.|.+|+||||||||+|+||
T Consensus 106 D~id~~~a~~~gI~V~n~pg~~~~~vAE~a~~l~L~~~R~~~~~~~~~r~g~W~~~~~~~~~g~~l~gktvGIIGlG~IG 185 (345)
T 4g2n_A 106 DHIDMAAARSLGIKVLHTPDVLSDACAEIAMLLVLNACRRGYEADRMVRSGSWPGWGPTQLLGMGLTGRRLGIFGMGRIG 185 (345)
T ss_dssp TTBCHHHHHHTTCEEECCCSCCHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCCCCTTTTCBCCCTTCEEEEESCSHHH
T ss_pred cccCHHHHHhCCEEEEECCcccchHHHHHHHHHHHHHHhCHHHHHHHHHcCCCcccCcccccccccCCCEEEEEEeChhH
Confidence 99999999999999999999999999999999999999999999999999999853 246899999999999999999
Q ss_pred HHHHHHhhcCCCEEEEECCCC-ChhHHHHcCCccc-CHHHHhccCCEEEEecCCCccccccccHhHhccCCCceEEEEcc
Q 007512 210 SEVARRAKGLGMHVIAHDPYA-PADRARAIGVDLV-SFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVA 287 (600)
Q Consensus 210 ~~vA~~l~~~g~~V~~~d~~~-~~~~a~~~g~~~~-~l~ell~~aDvV~l~~Pl~~~t~~li~~~~l~~mk~gailvNva 287 (600)
+++|+++++|||+|++||++. +.+.+ .|+.++ ++++++++||+|++|+|++++|+++++++.|+.||+|++|||+|
T Consensus 186 ~~vA~~l~~~G~~V~~~dr~~~~~~~~--~g~~~~~~l~ell~~sDvV~l~~Plt~~T~~li~~~~l~~mk~gailIN~a 263 (345)
T 4g2n_A 186 RAIATRARGFGLAIHYHNRTRLSHALE--EGAIYHDTLDSLLGASDIFLIAAPGRPELKGFLDHDRIAKIPEGAVVINIS 263 (345)
T ss_dssp HHHHHHHHTTTCEEEEECSSCCCHHHH--TTCEECSSHHHHHHTCSEEEECSCCCGGGTTCBCHHHHHHSCTTEEEEECS
T ss_pred HHHHHHHHHCCCEEEEECCCCcchhhh--cCCeEeCCHHHHHhhCCEEEEecCCCHHHHHHhCHHHHhhCCCCcEEEECC
Confidence 999999999999999999986 33332 277776 89999999999999999999999999999999999999999999
Q ss_pred CCccccHHHHHHhHhcCCceEEEEeccCCCCCCCCCccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCc
Q 007512 288 RGGVIDEEALVRALDSGRVAQAALDVFTEEPPPADSKLVQHERVTVTPHLGASTMEAQEGVAIEIAEAVVGALKGELAAT 367 (600)
Q Consensus 288 rg~ivde~aL~~aL~~g~i~ga~lDv~~~EP~~~~~~L~~~~nvilTPH~~~~t~ea~~~~~~~~~~~l~~~l~g~~~~~ 367 (600)
||+++|+++|+++|++|+|+||+||||+.|| +.++|||++||+++|||+|++|.|+++++...+++|+.+|++|+.+.+
T Consensus 264 RG~~vde~aL~~aL~~g~i~gA~LDVf~~EP-~~~~pL~~~~nvilTPHia~~t~e~~~~~~~~~~~ni~~~l~g~~~~~ 342 (345)
T 4g2n_A 264 RGDLINDDALIEALRSKHLFAAGLDVFANEP-AIDPRYRSLDNIFLTPHIGSATHETRDAMGWLLIQGIEALNQSDVPDN 342 (345)
T ss_dssp CGGGBCHHHHHHHHHHTSEEEEEESCCTTTT-SCCTTGGGCTTEEECCSCTTCBHHHHHHHHHHHHHHHHHHHTTCCCTT
T ss_pred CCchhCHHHHHHHHHhCCceEEEecCCCCCC-CCCchHHhCCCEEEcCccCcCCHHHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 9999999999999999999999999999999 689999999999999999999999999999999999999999999888
Q ss_pred ccc
Q 007512 368 AVN 370 (600)
Q Consensus 368 ~vn 370 (600)
.|+
T Consensus 343 ~V~ 345 (345)
T 4g2n_A 343 LIS 345 (345)
T ss_dssp BCC
T ss_pred CcC
Confidence 764
|
| >4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-66 Score=545.86 Aligned_cols=314 Identities=30% Similarity=0.474 Sum_probs=297.4
Q ss_pred CCeEEEecCCCHhHHHHhcccCcEEEcc---CCCHhHHhhhcCCceEEEEcCCCCCCHHHHhccCCCceEEEEcCcccCc
Q 007512 58 KPTVLIAEKLGQAGLDLLNEFANVDCAY---NLSPEELCTKISLCDALIVRSGTKVNRDVFESSAGRLKVVGRAGVGIDN 134 (600)
Q Consensus 58 ~~~ilv~~~l~~~~~~~l~~~~~v~~~~---~~~~~el~~~i~~~d~li~~~~~~~~~~~l~~~~~~Lk~I~~~g~G~d~ 134 (600)
|||||+++++.++.++.|++.+++.+.. .++++++.+.++++|++++++.+++++++++++ |+||+|++.|+|+||
T Consensus 2 ~~kvlv~~~~~~~~~~~l~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~i~~~~l~~~-~~Lk~I~~~~~G~d~ 80 (330)
T 4e5n_A 2 LPKLVITHRVHEEILQLLAPHCELITNQTDSTLTREEILRRCRDAQAMMAFMPDRVDADFLQAC-PELRVIGCALKGFDN 80 (330)
T ss_dssp CCEEEECSCCCHHHHHHHTTTCEEECCCSSSCCCHHHHHHHHTTCSEEEECTTCCBCHHHHHHC-TTCCEEEESSSCCTT
T ss_pred CCEEEEecCCCHHHHHHHHhCCeEEEecCCCCCCHHHHHHHhCCCeEEEEeCCCCCCHHHHhhC-CCCcEEEECCCcccc
Confidence 7899999999999999999888877642 357899999999999999988889999999998 699999999999999
Q ss_pred cChhHHHhCCceeecCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCccccc--cccceeccCCEEEEEecChhHHHH
Q 007512 135 VDLAAATEFGCLVVNAPTANTVAAAEHGIALLAAMARNVAQADASVKAGKWQRN--KYVGVSLVGKTLAVLGFGKVGSEV 212 (600)
Q Consensus 135 iD~~aa~~~GI~V~n~p~~~~~~vAE~~l~lll~~~R~i~~~~~~~~~g~W~~~--~~~g~~l~gktiGIIGlG~IG~~v 212 (600)
||+++|+++||.|+|+||+|+.+||||++++||+++|+++++++.+++|+|..+ .+.|.+|+|+||||||+|+||+++
T Consensus 81 id~~~~~~~gI~v~n~~~~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~l~g~tvGIIG~G~IG~~v 160 (330)
T 4e5n_A 81 FDVDACTARGVWLTFVPDLLTVPTAELAIGLAVGLGRHLRAADAFVRSGKFRGWQPRFYGTGLDNATVGFLGMGAIGLAM 160 (330)
T ss_dssp BCHHHHHHTTCEEECCSSTTHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCSCCSCCCCCCSTTCEEEEECCSHHHHHH
T ss_pred cCHHHHHhcCcEEEeCCCCCchHHHHHHHHHHHHHHhChHHHHHHHHhCCccccCccccCCccCCCEEEEEeeCHHHHHH
Confidence 999999999999999999999999999999999999999999999999999743 346889999999999999999999
Q ss_pred HHHhhcCCCEEEEECCCC-ChhHHHHcCCcccCHHHHhccCCEEEEecCCCccccccccHhHhccCCCceEEEEccCCcc
Q 007512 213 ARRAKGLGMHVIAHDPYA-PADRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGV 291 (600)
Q Consensus 213 A~~l~~~g~~V~~~d~~~-~~~~a~~~g~~~~~l~ell~~aDvV~l~~Pl~~~t~~li~~~~l~~mk~gailvNvarg~i 291 (600)
|+++++|||+|++||++. ..+.+.+.|+...++++++++||+|++|+|++++|+++++++.|+.||+|++|||+|||++
T Consensus 161 A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~arg~~ 240 (330)
T 4e5n_A 161 ADRLQGWGATLQYHEAKALDTQTEQRLGLRQVACSELFASSDFILLALPLNADTLHLVNAELLALVRPGALLVNPCRGSV 240 (330)
T ss_dssp HHHTTTSCCEEEEECSSCCCHHHHHHHTEEECCHHHHHHHCSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEEECSCGGG
T ss_pred HHHHHHCCCEEEEECCCCCcHhHHHhcCceeCCHHHHHhhCCEEEEcCCCCHHHHHHhCHHHHhhCCCCcEEEECCCCch
Confidence 999999999999999987 6666777888888999999999999999999999999999999999999999999999999
Q ss_pred ccHHHHHHhHhcCCceEEEEeccCCC-------CCCCCCccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCC
Q 007512 292 IDEEALVRALDSGRVAQAALDVFTEE-------PPPADSKLVQHERVTVTPHLGASTMEAQEGVAIEIAEAVVGALKGEL 364 (600)
Q Consensus 292 vde~aL~~aL~~g~i~ga~lDv~~~E-------P~~~~~~L~~~~nvilTPH~~~~t~ea~~~~~~~~~~~l~~~l~g~~ 364 (600)
+|+++|+++|++|+|+||++|||+.| |++.++|||++||+++|||+|++|.|+++++...+++|+.+|++|+.
T Consensus 241 vd~~aL~~aL~~g~i~gA~lDV~~~E~~~~~~~Pl~~~~~L~~~~nvilTPHia~~t~e~~~~~~~~~~~ni~~~~~g~~ 320 (330)
T 4e5n_A 241 VDEAAVLAALERGQLGGYAADVFEMEDWARADRPQQIDPALLAHPNTLFTPHIGSAVRAVRLEIERCAAQNILQALAGER 320 (330)
T ss_dssp BCHHHHHHHHHHTSEEEEEESCCGGGCTTCTTCCSSCCHHHHTCSSEEECSSCTTCCHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred hCHHHHHHHHHhCCccEEEecccccccccccCCCCCCCchHHcCCCEEECCcCCCChHHHHHHHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999 98889999999999999999999999999999999999999999999
Q ss_pred CCccccCC
Q 007512 365 AATAVNAP 372 (600)
Q Consensus 365 ~~~~vn~~ 372 (600)
+.+.||+|
T Consensus 321 ~~~~vn~~ 328 (330)
T 4e5n_A 321 PINAVNRL 328 (330)
T ss_dssp CTTBSSCC
T ss_pred CCCccCCC
Confidence 99999975
|
| >4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-65 Score=539.77 Aligned_cols=310 Identities=28% Similarity=0.419 Sum_probs=255.9
Q ss_pred CCCCCeEEEecCCCHhHHHHhcccCcEEEcc-CCCHhHHhhhcCCceEEEEcCCCCCCHHHHhccCCCceEEEEcCcccC
Q 007512 55 ISSKPTVLIAEKLGQAGLDLLNEFANVDCAY-NLSPEELCTKISLCDALIVRSGTKVNRDVFESSAGRLKVVGRAGVGID 133 (600)
Q Consensus 55 ~~~~~~ilv~~~l~~~~~~~l~~~~~v~~~~-~~~~~el~~~i~~~d~li~~~~~~~~~~~l~~~~~~Lk~I~~~g~G~d 133 (600)
.+.||+||+++++.++.++.|++.+++...+ ..+++++.+.++++|++++++.+++++++++++ |+||+|+++|+|+|
T Consensus 27 ~~~~~~vl~~~~~~~~~~~~L~~~~~v~~~~~~~~~~~~~~~~~~~d~li~~~~~~i~~~~l~~~-p~Lk~I~~~g~G~d 105 (340)
T 4dgs_A 27 RNVKPDLLLVEPMMPFVMDELQRNYSVHRLYQAADRPALEAALPSIRAVATGGGAGLSNEWMEKL-PSLGIIAINGVGTD 105 (340)
T ss_dssp ------CEECSCCCHHHHHTHHHHSCCEETTCGGGHHHHHHHGGGCCEEEEETTTCBCHHHHHHC-SSCCEEEEESSCCT
T ss_pred CCCCCEEEEECCCCHHHHHHHhcCCcEEEeCCCCCHHHHHHHhCCcEEEEEcCCCCCCHHHHhhC-CCCEEEEECCCCcc
Confidence 4568999999999999999998877777543 246778888889999999998889999999997 69999999999999
Q ss_pred ccChhHHHhCCceeecCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCccccc-c-ccceeccCCEEEEEecChhHHH
Q 007512 134 NVDLAAATEFGCLVVNAPTANTVAAAEHGIALLAAMARNVAQADASVKAGKWQRN-K-YVGVSLVGKTLAVLGFGKVGSE 211 (600)
Q Consensus 134 ~iD~~aa~~~GI~V~n~p~~~~~~vAE~~l~lll~~~R~i~~~~~~~~~g~W~~~-~-~~g~~l~gktiGIIGlG~IG~~ 211 (600)
|||+++|+++||.|+|+||+++.+||||++++||+++|+++++++.+++|+|.+. . ..|.+|+||||||||+|.||+.
T Consensus 106 ~id~~~a~~~gI~V~n~pg~~~~~vAE~a~~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~l~gktiGIIGlG~IG~~ 185 (340)
T 4dgs_A 106 KVDLARARRRNIDVTTTPGVLADDVADLGIALMLAVLRRVGDGDRLVREGRWAAGEQLPLGHSPKGKRIGVLGLGQIGRA 185 (340)
T ss_dssp TBCHHHHHHTTCEEECCCSSSHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCC------CCCCCCTTCEEEEECCSHHHHH
T ss_pred ccCHHHHHhCCEEEEECCCCCcchHHHHHHHHHHHHHhChHHHHHHHhcCCcccccCcCccccccCCEEEEECCCHHHHH
Confidence 9999999999999999999999999999999999999999999999999999875 2 2578999999999999999999
Q ss_pred HHHHhhcCCCEEEEECCCCChhHHHHcCCc-ccCHHHHhccCCEEEEecCCCccccccccHhHhccCCCceEEEEccCCc
Q 007512 212 VARRAKGLGMHVIAHDPYAPADRARAIGVD-LVSFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGG 290 (600)
Q Consensus 212 vA~~l~~~g~~V~~~d~~~~~~~a~~~g~~-~~~l~ell~~aDvV~l~~Pl~~~t~~li~~~~l~~mk~gailvNvarg~ 290 (600)
+|+++++|||+|++||++... ..++. ..++++++++||+|++|+|++++|+++++++.|+.||+|++|||++||+
T Consensus 186 vA~~l~~~G~~V~~~dr~~~~----~~~~~~~~sl~ell~~aDvVil~vP~t~~t~~li~~~~l~~mk~gailIN~aRG~ 261 (340)
T 4dgs_A 186 LASRAEAFGMSVRYWNRSTLS----GVDWIAHQSPVDLARDSDVLAVCVAASAATQNIVDASLLQALGPEGIVVNVARGN 261 (340)
T ss_dssp HHHHHHTTTCEEEEECSSCCT----TSCCEECSSHHHHHHTCSEEEECC----------CHHHHHHTTTTCEEEECSCC-
T ss_pred HHHHHHHCCCEEEEEcCCccc----ccCceecCCHHHHHhcCCEEEEeCCCCHHHHHHhhHHHHhcCCCCCEEEECCCCc
Confidence 999999999999999998643 22343 3589999999999999999999999999999999999999999999999
Q ss_pred cccHHHHHHhHhcCCceEEEEeccCCCCCCCCCccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCcccc
Q 007512 291 VIDEEALVRALDSGRVAQAALDVFTEEPPPADSKLVQHERVTVTPHLGASTMEAQEGVAIEIAEAVVGALKGELAATAVN 370 (600)
Q Consensus 291 ivde~aL~~aL~~g~i~ga~lDv~~~EP~~~~~~L~~~~nvilTPH~~~~t~ea~~~~~~~~~~~l~~~l~g~~~~~~vn 370 (600)
++|+++|+++|++|+|+||+||||+.||++. +|||++||+++|||+|++|.|++++++..+++|+.+|++|+++.+.||
T Consensus 262 vvde~aL~~aL~~g~i~gA~LDVf~~EP~~~-~~L~~~~nvilTPHia~~t~e~~~~~~~~~~~nl~~~~~g~~~~~~Vn 340 (340)
T 4dgs_A 262 VVDEDALIEALKSGTIAGAGLDVFVNEPAIR-SEFHTTPNTVLMPHQGSATVETRMAMGKLVLANLAAHFAGEKAPNTVN 340 (340)
T ss_dssp -------------CCSSEEEESCCSSSSSCC-SHHHHSSSEEECSSCSSCCHHHHHHHHHHHHHHHHHHHTTSCCTTBC-
T ss_pred ccCHHHHHHHHHcCCceEEEeCCcCCCCCCc-cchhhCCCEEEcCcCCcCCHHHHHHHHHHHHHHHHHHHcCCCCCCCcC
Confidence 9999999999999999999999999999864 699999999999999999999999999999999999999999999887
|
| >3kb6_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: MSE NAD 1PE; 2.12A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-65 Score=534.88 Aligned_cols=274 Identities=30% Similarity=0.458 Sum_probs=256.9
Q ss_pred hcCCceEEEEcCCCCCCHHHHhccCCCceEEEEcCcccCccChhHHHhCCceeecCCCCChHHHHHHHHHHHHHHHhchH
Q 007512 95 KISLCDALIVRSGTKVNRDVFESSAGRLKVVGRAGVGIDNVDLAAATEFGCLVVNAPTANTVAAAEHGIALLAAMARNVA 174 (600)
Q Consensus 95 ~i~~~d~li~~~~~~~~~~~l~~~~~~Lk~I~~~g~G~d~iD~~aa~~~GI~V~n~p~~~~~~vAE~~l~lll~~~R~i~ 174 (600)
.++++|++++++.+++++++|+++ |+||+|+++|+|+||||+++|+++||.|+|+||+++.+||||+++++|+++|+++
T Consensus 39 ~l~~ad~i~v~~~~~i~~~~l~~~-p~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~~~~l~L~~~r~~~ 117 (334)
T 3kb6_A 39 ELKKAELISVFVYDKLTEELLSKM-PRLKLIHTRSVGFDHIDLDYCKKKGILVTHIPAYSPESVAEHTFAMILTLVKRLK 117 (334)
T ss_dssp HHHHCSEEEECTTSCBCHHHHHTC-TTCCEEEESSSCCTTBCHHHHHHHTCEEECCTTSCHHHHHHHHHHHHHHHHTTHH
T ss_pred HhcCCCEEEEeCCCCCCHHHHhcC-CCCcEEEECCcccchhcHHHHHHCCCEEEECCCcCcHHHHHHHHHHHHHHhhccc
Confidence 457899999999899999999998 6999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCccccc-cccceeccCCEEEEEecChhHHHHHHHhhcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCC
Q 007512 175 QADASVKAGKWQRN-KYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPADRARAIGVDLVSFDEAIATAD 253 (600)
Q Consensus 175 ~~~~~~~~g~W~~~-~~~g~~l~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aD 253 (600)
++++.++.|.|.+. ...|.+++|||+||||+|+||+.+|+++++|||+|++|||+... ...+.++.++++++++++||
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~l~g~tvGIiG~G~IG~~va~~~~~fg~~v~~~d~~~~~-~~~~~~~~~~~l~ell~~sD 196 (334)
T 3kb6_A 118 RIEDRVKKLNFSQDSEILARELNRLTLGVIGTGRIGSRVAMYGLAFGMKVLCYDVVKRE-DLKEKGCVYTSLDELLKESD 196 (334)
T ss_dssp HHHHHHHTTCCCCCGGGCBCCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCH-HHHHTTCEECCHHHHHHHCS
T ss_pred cccccccccccccccccccceecCcEEEEECcchHHHHHHHhhcccCceeeecCCccch-hhhhcCceecCHHHHHhhCC
Confidence 99999999998754 35689999999999999999999999999999999999998643 34567888899999999999
Q ss_pred EEEEecCCCccccccccHhHhccCCCceEEEEccCCccccHHHHHHhHhcCCceEEEEeccCCCCCCCCC----------
Q 007512 254 FISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVIDEEALVRALDSGRVAQAALDVFTEEPPPADS---------- 323 (600)
Q Consensus 254 vV~l~~Pl~~~t~~li~~~~l~~mk~gailvNvarg~ivde~aL~~aL~~g~i~ga~lDv~~~EP~~~~~---------- 323 (600)
+|++|||+|++|+++||++.|++||+|++|||+|||++||++||++||++|+|+||+||||+.||++.++
T Consensus 197 ivslh~Plt~~T~~li~~~~l~~mk~~a~lIN~aRG~iVde~aL~~aL~~g~i~gA~LDV~~~EPl~~~~~~~~~~~~~~ 276 (334)
T 3kb6_A 197 VISLHVPYTKETHHMINEERISLMKDGVYLINTARGKVVDTDALYRAYQRGKFSGLGLDVFEDEEILILKKYTEGKATDK 276 (334)
T ss_dssp EEEECCCCCTTTTTCBCHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHTTCEEEEEESCCTTHHHHHTTGGGGTCCCHH
T ss_pred EEEEcCCCChhhccCcCHHHHhhcCCCeEEEecCccccccHHHHHHHHHhCCceEEEEeCCCCCCCcccccccccccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999986555
Q ss_pred -----ccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCcccc
Q 007512 324 -----KLVQHERVTVTPHLGASTMEAQEGVAIEIAEAVVGALKGELAATAVN 370 (600)
Q Consensus 324 -----~L~~~~nvilTPH~~~~t~ea~~~~~~~~~~~l~~~l~g~~~~~~vn 370 (600)
|||.+|||++|||+|++|.|++++++..+++|+.+|++|+.....+|
T Consensus 277 ~~~~~~L~~~~nvilTPHia~~T~ea~~~~~~~~~~ni~~~l~Ge~~~~~~n 328 (334)
T 3kb6_A 277 NLKILELACKDNVIITPHIAYYTDKSLERIREETVKVVKAFVKGDLEQIKGN 328 (334)
T ss_dssp HHHHHHHHTSTTEEECCSCTTCBHHHHHHHHHHHHHHHHHHHHTCGGGGGGG
T ss_pred cccchhhccCCCEEECCchhhChHHHHHHHHHHHHHHHHHHHcCCCCcCCCC
Confidence 68899999999999999999999999999999999999987765544
|
| >3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-63 Score=527.48 Aligned_cols=317 Identities=28% Similarity=0.460 Sum_probs=288.5
Q ss_pred CeEEEecCCCHhH-----HHHhcccCcEEEccC--CCHhHHhhhcCCceEEEE-cCCCCCCHHHHhccCCCceEEEEcCc
Q 007512 59 PTVLIAEKLGQAG-----LDLLNEFANVDCAYN--LSPEELCTKISLCDALIV-RSGTKVNRDVFESSAGRLKVVGRAGV 130 (600)
Q Consensus 59 ~~ilv~~~l~~~~-----~~~l~~~~~v~~~~~--~~~~el~~~i~~~d~li~-~~~~~~~~~~l~~~~~~Lk~I~~~g~ 130 (600)
|||++++.+.... ++.|+. .++.+... .+++++.+.++++|++++ ++.+++++++++++ |+||+|++.|+
T Consensus 3 mki~~~d~~~~~~~~~~~~~~l~~-~~v~~~~~~~~~~~~l~~~~~~ad~li~~~~~~~~~~~~l~~~-~~Lk~I~~~g~ 80 (352)
T 3gg9_A 3 LKIAVLDDYQDAVRKLDCFSLLQD-HEVKVFNNTVKGVGQLAARVADVEALVLIRERTRVTRQLLDRL-PKLKIISQTGR 80 (352)
T ss_dssp CEEEECCCTTCCGGGSGGGGGGTT-SEEEECCSCCCSHHHHHHHTTTCSEEEECTTSSCBCHHHHTTC-TTCCEEEESSC
T ss_pred eEEEEEcCccccchhhhhhhhhcC-ceEEEecCCCCCHHHHHHHhcCCeEEEEeCCCCCCCHHHHhhC-CCCeEEEEeCc
Confidence 7999999876432 334443 56665433 367889999999999998 66789999999998 69999999999
Q ss_pred cc----CccChhHHHhCCceeecCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCcccccc----------ccceecc
Q 007512 131 GI----DNVDLAAATEFGCLVVNAPTANTVAAAEHGIALLAAMARNVAQADASVKAGKWQRNK----------YVGVSLV 196 (600)
Q Consensus 131 G~----d~iD~~aa~~~GI~V~n~p~~~~~~vAE~~l~lll~~~R~i~~~~~~~~~g~W~~~~----------~~g~~l~ 196 (600)
|+ ||||+++|+++||.|+|+||+ +.+||||++++||+++|+++.+++.+++|.|.+.. ..|.+|+
T Consensus 81 G~~~~~d~id~~~a~~~gI~V~n~pg~-~~~vAE~al~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~~~~~~~~~l~ 159 (352)
T 3gg9_A 81 VSRDAGGHIDLEACTDKGVVVLEGKGS-PVAPAELTWALVMAAQRRIPQYVASLKHGAWQQSGLKSTTMPPNFGIGRVLK 159 (352)
T ss_dssp CCCSSSCSBCHHHHHHHTCEEECCCCC-SHHHHHHHHHHHHHHHTTHHHHHHHHHTTCTTCCCCCCTTSCTTTTSBCCCT
T ss_pred ccCCccCcccHHHHHhCCeEEEECCCC-cHHHHHHHHHHHHHHHhhHHHHHHHHHcCCCCcccccccccccccccCccCC
Confidence 99 999999999999999999999 99999999999999999999999999999998642 3588999
Q ss_pred CCEEEEEecChhHHHHHHHhhcCCCEEEEECCCCChhHHHHcCCccc-CHHHHhccCCEEEEecCCCccccccccHhHhc
Q 007512 197 GKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPADRARAIGVDLV-SFDEAIATADFISLHMPLTPATSKVLNDETFG 275 (600)
Q Consensus 197 gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~~~~a~~~g~~~~-~l~ell~~aDvV~l~~Pl~~~t~~li~~~~l~ 275 (600)
||||||||+|.||+++|+++++|||+|++||++...+.+.+.|+..+ ++++++++||+|++|+|++++|+++++++.|+
T Consensus 160 g~tvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~g~~~~~~l~ell~~aDiV~l~~Plt~~t~~li~~~~l~ 239 (352)
T 3gg9_A 160 GQTLGIFGYGKIGQLVAGYGRAFGMNVLVWGRENSKERARADGFAVAESKDALFEQSDVLSVHLRLNDETRSIITVADLT 239 (352)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSHHHHHHHHHTTCEECSSHHHHHHHCSEEEECCCCSTTTTTCBCHHHHT
T ss_pred CCEEEEEeECHHHHHHHHHHHhCCCEEEEECCCCCHHHHHhcCceEeCCHHHHHhhCCEEEEeccCcHHHHHhhCHHHHh
Confidence 99999999999999999999999999999999865556677888877 99999999999999999999999999999999
Q ss_pred cCCCceEEEEccCCccccHHHHHHhHhcCCceEEEEeccCCCCCCCCCccccCCcEEEcCCCCCCcHHHHHHHHHHHHHH
Q 007512 276 KMKKGVRIINVARGGVIDEEALVRALDSGRVAQAALDVFTEEPPPADSKLVQHERVTVTPHLGASTMEAQEGVAIEIAEA 355 (600)
Q Consensus 276 ~mk~gailvNvarg~ivde~aL~~aL~~g~i~ga~lDv~~~EP~~~~~~L~~~~nvilTPH~~~~t~ea~~~~~~~~~~~ 355 (600)
.||+|++|||+|||+++|+++|+++|++|+|+||++|||+.||++.++|||++||+++|||+|++|.|+++++...+++|
T Consensus 240 ~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gA~lDV~~~EPl~~~~pL~~~~nvilTPHia~~t~e~~~~~~~~~~~n 319 (352)
T 3gg9_A 240 RMKPTALFVNTSRAELVEENGMVTALNRGRPGMAAIDVFETEPILQGHTLLRMENCICTPHIGYVERESYEMYFGIAFQN 319 (352)
T ss_dssp TSCTTCEEEECSCGGGBCTTHHHHHHHHTSSSEEEECCCSSSCCCSCCGGGGCTTEEECCSCTTCBHHHHHHHHHHHHHH
T ss_pred hCCCCcEEEECCCchhhcHHHHHHHHHhCCccEEEecccCCCCCCCCChhhcCCCEEECCCCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCCccccCCCCChhhh
Q 007512 356 VVGALKGELAATAVNAPMVPAEVL 379 (600)
Q Consensus 356 l~~~l~g~~~~~~vn~~~i~~~~~ 379 (600)
+.+|++|++ .+.||+..+...+.
T Consensus 320 i~~~~~G~p-~~~Vn~~~~~~~~~ 342 (352)
T 3gg9_A 320 ILDILQGNV-DSVANPTALAPALI 342 (352)
T ss_dssp HHHHHTTCC-TTBSCGGGSSCTTT
T ss_pred HHHHHcCCC-CcccCHHHHHHHHH
Confidence 999999965 68999776666544
|
| >2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-63 Score=521.04 Aligned_cols=310 Identities=48% Similarity=0.745 Sum_probs=283.5
Q ss_pred CCCCeEEEecCCCHhHHHHhccc-CcEEEccCCCHhHHhhhcCCceEEEEcCCCCCCHHHHhccCCCceEEEEcCcccCc
Q 007512 56 SSKPTVLIAEKLGQAGLDLLNEF-ANVDCAYNLSPEELCTKISLCDALIVRSGTKVNRDVFESSAGRLKVVGRAGVGIDN 134 (600)
Q Consensus 56 ~~~~~ilv~~~l~~~~~~~l~~~-~~v~~~~~~~~~el~~~i~~~d~li~~~~~~~~~~~l~~~~~~Lk~I~~~g~G~d~ 134 (600)
++++||++++.+.+...+.|++. .++.+....+.+++.+.++++|++++++.+++++++++++ |+||||++.|+|+||
T Consensus 24 ~~~~~vli~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~~~~~d~li~~~~~~~~~~~l~~~-~~Lk~I~~~~~G~d~ 102 (335)
T 2g76_A 24 ANLRKVLISDSLDPCCRKILQDGGLQVVEKQNLSKEELIAELQDCEGLIVRSATKVTADVINAA-EKLQVVGRAGTGVDN 102 (335)
T ss_dssp --CCEEEECSCCCHHHHHHHHHHTCEEEECCSCCHHHHHHHGGGCSEEEECSSSCBCHHHHHHC-SSCCEEEESSSSCTT
T ss_pred ccceEEEEcCCCCHHHHHHHHhCCCEEEECCCCCHHHHHHHhcCceEEEEcCCCCCCHHHHhhC-CCCcEEEECCCCcch
Confidence 45679999999999988888875 3665555567889999999999999988788999999997 699999999999999
Q ss_pred cChhHHHhCCceeecCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCccccccccceeccCCEEEEEecChhHHHHHH
Q 007512 135 VDLAAATEFGCLVVNAPTANTVAAAEHGIALLAAMARNVAQADASVKAGKWQRNKYVGVSLVGKTLAVLGFGKVGSEVAR 214 (600)
Q Consensus 135 iD~~aa~~~GI~V~n~p~~~~~~vAE~~l~lll~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktiGIIGlG~IG~~vA~ 214 (600)
||+++|+++||.|+|+|++|+.+||||++++||+++|+++++++.+++|.|.+..+.+.++.|+||||||+|.||+++|+
T Consensus 103 id~~~~~~~gI~v~n~p~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~l~g~tvgIIGlG~IG~~vA~ 182 (335)
T 2g76_A 103 VDLEAATRKGILVMNTPNGNSLSAAELTCGMIMCLARQIPQATASMKDGKWERKKFMGTELNGKTLGILGLGRIGREVAT 182 (335)
T ss_dssp BCHHHHHHHTCEEECCSSTTHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCTGGGCBCCCTTCEEEEECCSHHHHHHHH
T ss_pred hChHHHHhCCeEEEECCCccchHHHHHHHHHHHHHHhchHHHHHHHHcCCCCccCCCCcCCCcCEEEEEeECHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999987656789999999999999999999999
Q ss_pred HhhcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEecCCCccccccccHhHhccCCCceEEEEccCCccccH
Q 007512 215 RAKGLGMHVIAHDPYAPADRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVIDE 294 (600)
Q Consensus 215 ~l~~~g~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Pl~~~t~~li~~~~l~~mk~gailvNvarg~ivde 294 (600)
++++|||+|++||++.....+.+.|+...++++++++||+|++|+|++++|+++++++.|+.||+|++|||+|||+++|+
T Consensus 183 ~l~~~G~~V~~~d~~~~~~~~~~~g~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~arg~vvd~ 262 (335)
T 2g76_A 183 RMQSFGMKTIGYDPIISPEVSASFGVQQLPLEEIWPLCDFITVHTPLLPSTTGLLNDNTFAQCKKGVRVVNCARGGIVDE 262 (335)
T ss_dssp HHHTTTCEEEEECSSSCHHHHHHTTCEECCHHHHGGGCSEEEECCCCCTTTTTSBCHHHHTTSCTTEEEEECSCTTSBCH
T ss_pred HHHHCCCEEEEECCCcchhhhhhcCceeCCHHHHHhcCCEEEEecCCCHHHHHhhCHHHHhhCCCCcEEEECCCccccCH
Confidence 99999999999999886666777888778999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhHhcCCceEEEEeccCCCCCCCCCccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCc
Q 007512 295 EALVRALDSGRVAQAALDVFTEEPPPADSKLVQHERVTVTPHLGASTMEAQEGVAIEIAEAVVGALKGELAAT 367 (600)
Q Consensus 295 ~aL~~aL~~g~i~ga~lDv~~~EP~~~~~~L~~~~nvilTPH~~~~t~ea~~~~~~~~~~~l~~~l~g~~~~~ 367 (600)
++|+++|++|+|+||++|||+.||+ +++|||++||+++|||++++|.|+++++...+++|+.+|++|+++.+
T Consensus 263 ~aL~~aL~~g~i~gA~lDV~~~EP~-~~~~L~~~~nvilTPH~~~~t~e~~~~~~~~~~~nl~~~~~g~~~~n 334 (335)
T 2g76_A 263 GALLRALQSGQCAGAALDVFTEEPP-RDRALVDHENVISCPHLGASTKEAQSRCGEEIAVQFVDMVKGKSLTG 334 (335)
T ss_dssp HHHHHHHHHTSEEEEEESCCSSSSC-SCCHHHHSTTEEECSSCTTCBHHHHHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHhCCccEEEEeecCCCCC-CCchHHhCCCEEECCcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 9999999999999999999999994 68999999999999999999999999999999999999999987654
|
| >3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-63 Score=522.89 Aligned_cols=311 Identities=23% Similarity=0.298 Sum_probs=279.1
Q ss_pred CCCCeEEEecCCCHhHHHHh-ccc-CcEEEccCCCHhHHhhhcCCceEEEEcCCCCCCHHHHhccCCCceEEEEcCcccC
Q 007512 56 SSKPTVLIAEKLGQAGLDLL-NEF-ANVDCAYNLSPEELCTKISLCDALIVRSGTKVNRDVFESSAGRLKVVGRAGVGID 133 (600)
Q Consensus 56 ~~~~~ilv~~~l~~~~~~~l-~~~-~~v~~~~~~~~~el~~~i~~~d~li~~~~~~~~~~~l~~~~~~Lk~I~~~g~G~d 133 (600)
.+|+|||+++++.+...+.| ++. .++++....+.+++.+.+.++|+++++. ++++++++++ |+||||++.|+|+|
T Consensus 3 ~~~mkili~~~~~~~~~~~L~~~~~p~~~~~~~~~~~~~~~~~~~ad~li~~~--~~~~~~l~~~-~~Lk~I~~~~~G~d 79 (324)
T 3hg7_A 3 LSQRTLLLLSQDNAHYERLLKAAHLPHLRILRADNQSDAEKLIGEAHILMAEP--ARAKPLLAKA-NKLSWFQSTYAGVD 79 (324)
T ss_dssp -CCEEEEEESTTHHHHHHHHHHSCCTTEEEEECSSHHHHHHHGGGCSEEEECH--HHHGGGGGGC-TTCCEEEESSSCCG
T ss_pred ccccEEEEecCCCHHHHHHHhhccCCCeEEEeCCChhHHHHHhCCCEEEEECC--CCCHHHHhhC-CCceEEEECCCCCC
Confidence 35699999999999999999 554 4777766567788889999999999853 4667889987 69999999999999
Q ss_pred ccChhHHHhCCceeecCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCccccccccceeccCCEEEEEecChhHHHHH
Q 007512 134 NVDLAAATEFGCLVVNAPTANTVAAAEHGIALLAAMARNVAQADASVKAGKWQRNKYVGVSLVGKTLAVLGFGKVGSEVA 213 (600)
Q Consensus 134 ~iD~~aa~~~GI~V~n~p~~~~~~vAE~~l~lll~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktiGIIGlG~IG~~vA 213 (600)
|||++++++ ||.|+|+||+++.+||||++++||+++|+++.+++.+++|+|.+. .+.+++|+||||||+|.||+++|
T Consensus 80 ~id~~~~~~-gI~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~--~~~~l~g~tvGIIGlG~IG~~vA 156 (324)
T 3hg7_A 80 VLLDARCRR-DYQLTNVRGIFGPLMSEYVFGHLLSLMRQLPLYREQQKQRLWQSH--PYQGLKGRTLLILGTGSIGQHIA 156 (324)
T ss_dssp GGSCTTSCC-SSEEECCCSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCC--CCCCSTTCEEEEECCSHHHHHHH
T ss_pred ccChHHHhC-CEEEEECCCcChHHHHHHHHHHHHHHHhChHHHHHHHhhCCCcCC--CCcccccceEEEEEECHHHHHHH
Confidence 999998865 999999999999999999999999999999999999999999864 57899999999999999999999
Q ss_pred HHhhcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEecCCCccccccccHhHhccCCCceEEEEccCCcccc
Q 007512 214 RRAKGLGMHVIAHDPYAPADRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVID 293 (600)
Q Consensus 214 ~~l~~~g~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Pl~~~t~~li~~~~l~~mk~gailvNvarg~ivd 293 (600)
+++++|||+|++||++.........+....++++++++||+|++|+|++++|+++++++.|+.||+|++|||+|||+++|
T Consensus 157 ~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~gailIN~aRG~~vd 236 (324)
T 3hg7_A 157 HTGKHFGMKVLGVSRSGRERAGFDQVYQLPALNKMLAQADVIVSVLPATRETHHLFTASRFEHCKPGAILFNVGRGNAIN 236 (324)
T ss_dssp HHHHHTTCEEEEECSSCCCCTTCSEEECGGGHHHHHHTCSEEEECCCCCSSSTTSBCTTTTTCSCTTCEEEECSCGGGBC
T ss_pred HHHHhCCCEEEEEcCChHHhhhhhcccccCCHHHHHhhCCEEEEeCCCCHHHHHHhHHHHHhcCCCCcEEEECCCchhhC
Confidence 99999999999999886322111122345689999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhHhcCCceEEEEeccCCCCCCCCCccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCccccCCC
Q 007512 294 EEALVRALDSGRVAQAALDVFTEEPPPADSKLVQHERVTVTPHLGASTMEAQEGVAIEIAEAVVGALKGELAATAVNAPM 373 (600)
Q Consensus 294 e~aL~~aL~~g~i~ga~lDv~~~EP~~~~~~L~~~~nvilTPH~~~~t~ea~~~~~~~~~~~l~~~l~g~~~~~~vn~~~ 373 (600)
+++|+++|++|+|+||++|||+.||++.++|||++||+++|||+|++|.+ +++...+++|+.+|++|+++.+.||+..
T Consensus 237 e~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~nvilTPHia~~t~~--~~~~~~~~~nl~~~~~G~~~~~~V~~~~ 314 (324)
T 3hg7_A 237 EGDLLTALRTGKLGMAVLDVFEQEPLPADSPLWGQPNLIITPHNSAYSFP--DDVAQIFVRNYIRFIDGQPLDGKIDFDK 314 (324)
T ss_dssp HHHHHHHHHTTSSSEEEESCCSSSSCCTTCTTTTCTTEEECCSCSSCCCH--HHHHHHHHHHHHHHHTTCCCTTBCCCC-
T ss_pred HHHHHHHHHcCCceEEEeccCCCCCCCCCChhhcCCCEEEeCCCccccHH--HHHHHHHHHHHHHHHcCCCCcceEChhh
Confidence 99999999999999999999999999999999999999999999999976 4688999999999999999999999764
Q ss_pred C
Q 007512 374 V 374 (600)
Q Consensus 374 i 374 (600)
.
T Consensus 315 ~ 315 (324)
T 3hg7_A 315 G 315 (324)
T ss_dssp -
T ss_pred h
Confidence 4
|
| >4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-63 Score=526.43 Aligned_cols=314 Identities=20% Similarity=0.288 Sum_probs=277.9
Q ss_pred CCCCCCeEEEecCC--------CHhHHHHhcccCcEEEccCCCHhHHhh-hcCCceEEEEcCCCCCCHHHHhccCCCceE
Q 007512 54 GISSKPTVLIAEKL--------GQAGLDLLNEFANVDCAYNLSPEELCT-KISLCDALIVRSGTKVNRDVFESSAGRLKV 124 (600)
Q Consensus 54 ~~~~~~~ilv~~~l--------~~~~~~~l~~~~~v~~~~~~~~~el~~-~i~~~d~li~~~~~~~~~~~l~~~~~~Lk~ 124 (600)
+.+..++++++++. .++.++.|++.+++......+.+|+.+ .+.++|+++. .+++++++++++ |+||+
T Consensus 23 m~~~~r~ivll~~~~~~~~~~~~~~~~~~L~~~~~v~~~~~~~~~e~~~~~~~~~~~i~~--~~~i~~~~l~~~-p~Lk~ 99 (365)
T 4hy3_A 23 MTNTERPLAISAPEPRSLDLIFSDEARAALHSKYEIVEADPENIAGLGDDILGRARYIIG--QPPLSAETLARM-PALRS 99 (365)
T ss_dssp -----CCEEEEECTTSCHHHHCCHHHHHHHHHHSEEEECCGGGGGGSCTTHHHHEEEEEE--CCCCCHHHHTTC-TTCCE
T ss_pred cccCCCCEEEEcCCcccccccCCHHHHHHHhCCcEEEECCCCChHHHHHHhhCCeEEEEe--CCCCCHHHHhhC-CCCeE
Confidence 34444556666665 566888998888887544445566554 3467888774 368999999998 69999
Q ss_pred EEEc-CcccCccChhHHHhCCceeecCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCcc--ccc-cccceeccCCEE
Q 007512 125 VGRA-GVGIDNVDLAAATEFGCLVVNAPTANTVAAAEHGIALLAAMARNVAQADASVKAGKW--QRN-KYVGVSLVGKTL 200 (600)
Q Consensus 125 I~~~-g~G~d~iD~~aa~~~GI~V~n~p~~~~~~vAE~~l~lll~~~R~i~~~~~~~~~g~W--~~~-~~~g~~l~gkti 200 (600)
|++. |+|+||||+++|+++||.|+|+|++|+.+||||++++||+++|+++++++.+++|+| .+. .+.+.+|+||||
T Consensus 100 I~~~~~~G~d~iD~~~a~~~GI~V~n~~~~~~~~vAE~~l~l~L~~~R~~~~~~~~~r~g~~~w~~~~~~~~~~l~gktv 179 (365)
T 4hy3_A 100 ILNVESNLLNNMPYEVLFQRGIHVVTTGQVFAEPVAEIGLGFALALARGIVDADIAFQEGTELWGGEGNASARLIAGSEI 179 (365)
T ss_dssp EECCSSSCCSCSCTTHHHHSCCEEEECGGGGHHHHHHHHHHHHHHHHHTTTHHHHHHHHTCCCCSSSSTTSCCCSSSSEE
T ss_pred EEEecccccCcccHHHHhcCCeEEEeCCCccchHHHHHHHHHHHHHHhchhHHHHHHHcCCccccccccccccccCCCEE
Confidence 9975 899999999999999999999999999999999999999999999999999999995 432 346889999999
Q ss_pred EEEecChhHHHHHHHhhcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEecCCCccccccccHhHhccCCCc
Q 007512 201 AVLGFGKVGSEVARRAKGLGMHVIAHDPYAPADRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKG 280 (600)
Q Consensus 201 GIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Pl~~~t~~li~~~~l~~mk~g 280 (600)
||||+|.||+++|+++++|||+|++||++.+.+.+.+.|+...++++++++||+|++|+|++++|+++++++.|+.||+|
T Consensus 180 GIIGlG~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~g~~~~~l~ell~~aDvV~l~~Plt~~T~~li~~~~l~~mk~g 259 (365)
T 4hy3_A 180 GIVGFGDLGKALRRVLSGFRARIRVFDPWLPRSMLEENGVEPASLEDVLTKSDFIFVVAAVTSENKRFLGAEAFSSMRRG 259 (365)
T ss_dssp EEECCSHHHHHHHHHHTTSCCEEEEECSSSCHHHHHHTTCEECCHHHHHHSCSEEEECSCSSCC---CCCHHHHHTSCTT
T ss_pred EEecCCcccHHHHHhhhhCCCEEEEECCCCCHHHHhhcCeeeCCHHHHHhcCCEEEEcCcCCHHHHhhcCHHHHhcCCCC
Confidence 99999999999999999999999999999876667788988889999999999999999999999999999999999999
Q ss_pred eEEEEccCCccccHHHHHHhHhcCCceEEEEeccCCCCCCCCCccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHH
Q 007512 281 VRIINVARGGVIDEEALVRALDSGRVAQAALDVFTEEPPPADSKLVQHERVTVTPHLGASTMEAQEGVAIEIAEAVVGAL 360 (600)
Q Consensus 281 ailvNvarg~ivde~aL~~aL~~g~i~ga~lDv~~~EP~~~~~~L~~~~nvilTPH~~~~t~ea~~~~~~~~~~~l~~~l 360 (600)
++|||+|||+++|+++|+++|++|+|+ |++|||+.||++.++|||++||+++|||+|++|.|++++++..+++|+.+|+
T Consensus 260 ailIN~aRG~~vde~aL~~aL~~g~i~-aaLDV~~~EPl~~~~pL~~~~nvilTPHia~~t~e~~~~~~~~~~~ni~~~~ 338 (365)
T 4hy3_A 260 AAFILLSRADVVDFDALMAAVSSGHIV-AASDVYPEEPLPLDHPVRSLKGFIRSAHRAGALDSAFKKMGDMVLEDMDLMD 338 (365)
T ss_dssp CEEEECSCGGGSCHHHHHHHHHTTSSE-EEESCCSSSSCCTTCGGGTCTTEEECCSCSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred cEEEECcCCchhCHHHHHHHHHcCCce-EEeeCCCCCCCCCCChhhcCCCEEECCccccCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999998 9999999999989999999999999999999999999999999999999999
Q ss_pred cCCCCCccccC
Q 007512 361 KGELAATAVNA 371 (600)
Q Consensus 361 ~g~~~~~~vn~ 371 (600)
+|+++.+.+|.
T Consensus 339 ~G~~~~~~vn~ 349 (365)
T 4hy3_A 339 RGLPPMRCKRA 349 (365)
T ss_dssp TTCCCCSSEEC
T ss_pred cCCCccccccc
Confidence 99999999986
|
| >2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-63 Score=522.73 Aligned_cols=312 Identities=21% Similarity=0.317 Sum_probs=273.4
Q ss_pred CCeEEEecCCC--HhHHHHh-cccC-cEEEccCCCHhHHhhhcCCceEEEEcCCCCCCHH-HHhccC-CCceEEEEcCcc
Q 007512 58 KPTVLIAEKLG--QAGLDLL-NEFA-NVDCAYNLSPEELCTKISLCDALIVRSGTKVNRD-VFESSA-GRLKVVGRAGVG 131 (600)
Q Consensus 58 ~~~ilv~~~l~--~~~~~~l-~~~~-~v~~~~~~~~~el~~~i~~~d~li~~~~~~~~~~-~l~~~~-~~Lk~I~~~g~G 131 (600)
++||++.+..+ .+.++.+ ++.+ ++.+......+|+.+.++++|++++++.++++++ +|++++ ++||+|++.|+|
T Consensus 1 Mmki~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~li~~~~~~~~~~~~l~~~~~~~Lk~I~~~~~G 80 (343)
T 2yq5_A 1 MTKIAMYNVSPIEVPYIEDWAKKNDVEIKTTDQALTSATVDLAEGCSSVSLKPLGPVDEEVVYQKLSEYGVKCIGLRIVG 80 (343)
T ss_dssp -CEEEEESCCGGGHHHHHHHHHHHTCEEEEESSCCSTTGGGGGTTCSEEEECCSSCBCCHHHHHHHHHTTCCEEEESSSC
T ss_pred CceEEEEecCcccHHHHHHHHHhCCeEEEECCCCCCHHHHHHhcCCcEEEEcCCCCcCHHHHHHhccccCceEEEECcee
Confidence 47899988332 2233333 3332 5655444334678889999999999988899999 999873 369999999999
Q ss_pred cCccChhHHHhCCceeecCCCCChHHHHHHHHHHHHHHHhchHHHHHHHH-cCcccc-ccccceeccCCEEEEEecChhH
Q 007512 132 IDNVDLAAATEFGCLVVNAPTANTVAAAEHGIALLAAMARNVAQADASVK-AGKWQR-NKYVGVSLVGKTLAVLGFGKVG 209 (600)
Q Consensus 132 ~d~iD~~aa~~~GI~V~n~p~~~~~~vAE~~l~lll~~~R~i~~~~~~~~-~g~W~~-~~~~g~~l~gktiGIIGlG~IG 209 (600)
+||||+++|+++||.|+|+|++++.+||||+++++|+++|+++.+++.++ +|+|.+ ..+.+.+|+||||||||+|+||
T Consensus 81 ~d~id~~~~~~~gI~v~n~p~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~~g~~~w~~~~~~~~l~gktvgIiGlG~IG 160 (343)
T 2yq5_A 81 FNTINFDWTKKYNLLVTNVPVYSPRAIAEMTVTQAMYLLRKIGEFRYRMDHDHDFTWPSNLISNEIYNLTVGLIGVGHIG 160 (343)
T ss_dssp CTTBCSSTTCC--CEEECCSCSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHCCCCCCGGGCBCCGGGSEEEEECCSHHH
T ss_pred ecccchhHHHhCCEEEEECCCCCcHHHHHHHHHHHHHHHhchHHHHHHHHHcCCcccccCCCccccCCCeEEEEecCHHH
Confidence 99999999999999999999999999999999999999999999999999 998754 3467899999999999999999
Q ss_pred HHHHHHhhcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEecCCCccccccccHhHhccCCCceEEEEccCC
Q 007512 210 SEVARRAKGLGMHVIAHDPYAPADRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARG 289 (600)
Q Consensus 210 ~~vA~~l~~~g~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Pl~~~t~~li~~~~l~~mk~gailvNvarg 289 (600)
+++|+++++|||+|++||++.... .+.++.++++++++++||+|++|+|++++|+++++++.|+.||+|++|||+|||
T Consensus 161 ~~vA~~l~~~G~~V~~~d~~~~~~--~~~~~~~~~l~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg 238 (343)
T 2yq5_A 161 SAVAEIFSAMGAKVIAYDVAYNPE--FEPFLTYTDFDTVLKEADIVSLHTPLFPSTENMIGEKQLKEMKKSAYLINCARG 238 (343)
T ss_dssp HHHHHHHHHTTCEEEEECSSCCGG--GTTTCEECCHHHHHHHCSEEEECCCCCTTTTTCBCHHHHHHSCTTCEEEECSCG
T ss_pred HHHHHHHhhCCCEEEEECCChhhh--hhccccccCHHHHHhcCCEEEEcCCCCHHHHHHhhHHHHhhCCCCcEEEECCCC
Confidence 999999999999999999987542 233566779999999999999999999999999999999999999999999999
Q ss_pred ccccHHHHHHhHhcCCceEEEEeccCCCC--CCCC-----------CccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHH
Q 007512 290 GVIDEEALVRALDSGRVAQAALDVFTEEP--PPAD-----------SKLVQHERVTVTPHLGASTMEAQEGVAIEIAEAV 356 (600)
Q Consensus 290 ~ivde~aL~~aL~~g~i~ga~lDv~~~EP--~~~~-----------~~L~~~~nvilTPH~~~~t~ea~~~~~~~~~~~l 356 (600)
+++|+++|+++|++|+|+||+||||++|| ++.+ +|||++|||++|||+|++|.|+++++...+++|+
T Consensus 239 ~~vd~~aL~~aL~~g~i~gA~LDV~~~EP~~~~~~~~~~~~l~~~~~pL~~~~nvilTPHia~~t~ea~~~~~~~~~~ni 318 (343)
T 2yq5_A 239 ELVDTGALIKALQDGEIAGAGLDTLAGESSYFGHTGLTDSEIPEDYKTLAKMPNVVITPHSAFYTETSIRNMVQICLTDQ 318 (343)
T ss_dssp GGBCHHHHHHHHHHTSSSCEEESCCTTGGGTTTCCSCCTTTSCHHHHHHTTCTTEEECSSCTTCBHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHcCCCcEEEecccccCCCccccccccccccccchhHHhcCCCEEECCccccchHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999 4444 4899999999999999999999999999999999
Q ss_pred HHHHcCCCCCccccC
Q 007512 357 VGALKGELAATAVNA 371 (600)
Q Consensus 357 ~~~l~g~~~~~~vn~ 371 (600)
.+|++|+.+.+.||+
T Consensus 319 ~~~l~g~~~~~~v~~ 333 (343)
T 2yq5_A 319 LTIAKGGRPRSIVNL 333 (343)
T ss_dssp HHHHTTCCCTTBC--
T ss_pred HHHHcCCCCCceECC
Confidence 999999999999985
|
| >3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-63 Score=522.44 Aligned_cols=315 Identities=28% Similarity=0.410 Sum_probs=286.9
Q ss_pred CCCCCeEEEecCCCHhHHHHhcccC-cEEEccC--CCHhHHhhhcCCceEEEEcCC--CCCCHHHHhccCCCceEEEEcC
Q 007512 55 ISSKPTVLIAEKLGQAGLDLLNEFA-NVDCAYN--LSPEELCTKISLCDALIVRSG--TKVNRDVFESSAGRLKVVGRAG 129 (600)
Q Consensus 55 ~~~~~~ilv~~~l~~~~~~~l~~~~-~v~~~~~--~~~~el~~~i~~~d~li~~~~--~~~~~~~l~~~~~~Lk~I~~~g 129 (600)
.+.+|++|..+.......++|++.+ ++.+... .+.+++.+.++++|++|+++. .++++++++++ |+||+|+++|
T Consensus 16 ~~~~~~~lg~~~~~l~~~~~L~~~g~ev~~~~~~~~~~~~~~~~~~~ad~li~~~~~~~~~~~~~l~~~-p~Lk~i~~~g 94 (351)
T 3jtm_A 16 ATKNPNFLGCVENALGIRDWLESQGHQYIVTDDKEGPDCELEKHIPDLHVLISTPFHPAYVTAERIKKA-KNLKLLLTAG 94 (351)
T ss_dssp HHHCTTCCSSTTTGGGCHHHHHHTTCEEEEESCCSSTTSHHHHHTTTCSEEEECTTSCCCBCHHHHHHC-SSCCEEEESS
T ss_pred cccCCCEEEeccchHHHHHHHHHCCCEEEEeCCCCCCHHHHHHHhCCCEEEEEccCCCCCCCHHHHhhC-CCCeEEEEeC
Confidence 4457888888877777788888764 6665432 245689999999999998753 56999999998 6999999999
Q ss_pred cccCccChhHHHhCCceeecCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCcccccc--ccceeccCCEEEEEecCh
Q 007512 130 VGIDNVDLAAATEFGCLVVNAPTANTVAAAEHGIALLAAMARNVAQADASVKAGKWQRNK--YVGVSLVGKTLAVLGFGK 207 (600)
Q Consensus 130 ~G~d~iD~~aa~~~GI~V~n~p~~~~~~vAE~~l~lll~~~R~i~~~~~~~~~g~W~~~~--~~g~~l~gktiGIIGlG~ 207 (600)
+|+||||+++|+++||.|+|+||+|+.+||||++++||+++|+++++++.+++|.|.+.. ..+.+|+|+||||||+|+
T Consensus 95 ~G~d~id~~~a~~~gI~V~n~~g~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~l~gktvGIIG~G~ 174 (351)
T 3jtm_A 95 IGSDHIDLQAAAAAGLTVAEVTGSNVVSVAEDELMRILILMRNFVPGYNQVVKGEWNVAGIAYRAYDLEGKTIGTVGAGR 174 (351)
T ss_dssp SCCTTBCHHHHHHTTCEEEECTTTTHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCHHHHHTTCCCSTTCEEEEECCSH
T ss_pred eeecccCHHHHHhcCeeEEECCCcCchHHHHHHHHHHHHHhhCcHHHHHHHHcCCCccccccCCcccccCCEEeEEEeCH
Confidence 999999999999999999999999999999999999999999999999999999998642 247899999999999999
Q ss_pred hHHHHHHHhhcCCCEEEEECCCC-ChhHHHHcCCccc-CHHHHhccCCEEEEecCCCccccccccHhHhccCCCceEEEE
Q 007512 208 VGSEVARRAKGLGMHVIAHDPYA-PADRARAIGVDLV-SFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIIN 285 (600)
Q Consensus 208 IG~~vA~~l~~~g~~V~~~d~~~-~~~~a~~~g~~~~-~l~ell~~aDvV~l~~Pl~~~t~~li~~~~l~~mk~gailvN 285 (600)
||+++|+++++|||+|++||++. +.+.+.+.|+..+ ++++++++||+|++|+|++++|+++++++.|+.||+|++|||
T Consensus 175 IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN 254 (351)
T 3jtm_A 175 IGKLLLQRLKPFGCNLLYHDRLQMAPELEKETGAKFVEDLNEMLPKCDVIVINMPLTEKTRGMFNKELIGKLKKGVLIVN 254 (351)
T ss_dssp HHHHHHHHHGGGCCEEEEECSSCCCHHHHHHHCCEECSCHHHHGGGCSEEEECSCCCTTTTTCBSHHHHHHSCTTEEEEE
T ss_pred HHHHHHHHHHHCCCEEEEeCCCccCHHHHHhCCCeEcCCHHHHHhcCCEEEECCCCCHHHHHhhcHHHHhcCCCCCEEEE
Confidence 99999999999999999999986 5666777888776 899999999999999999999999999999999999999999
Q ss_pred ccCCccccHHHHHHhHhcCCceEEEEeccCCCCCCCCCccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCC-
Q 007512 286 VARGGVIDEEALVRALDSGRVAQAALDVFTEEPPPADSKLVQHERVTVTPHLGASTMEAQEGVAIEIAEAVVGALKGEL- 364 (600)
Q Consensus 286 varg~ivde~aL~~aL~~g~i~ga~lDv~~~EP~~~~~~L~~~~nvilTPH~~~~t~ea~~~~~~~~~~~l~~~l~g~~- 364 (600)
+|||+++|+++|+++|++|+|+||++|||+.||++.++|||++||+++|||+|+.|.|++.+++..+++|+.+|++|+.
T Consensus 255 ~aRG~~vde~aL~~aL~~g~i~ga~lDV~~~EP~~~~~pL~~~~nvilTPHia~~t~ea~~~~~~~~~~nl~~~~~g~~~ 334 (351)
T 3jtm_A 255 NARGAIMERQAVVDAVESGHIGGYSGDVWDPQPAPKDHPWRYMPNQAMTPHTSGTTIDAQLRYAAGTKDMLERYFKGEDF 334 (351)
T ss_dssp CSCGGGBCHHHHHHHHHHTSEEEEEESCCSSSSCCTTCGGGTSTTBCCCCSCGGGSHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred CcCchhhCHHHHHHHHHhCCccEEEeCCCCCCCCCCCChhhcCCCEEECCcCCCCCHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999985
Q ss_pred -CCcccc
Q 007512 365 -AATAVN 370 (600)
Q Consensus 365 -~~~~vn 370 (600)
+.|.++
T Consensus 335 ~~~~~i~ 341 (351)
T 3jtm_A 335 PTENYIV 341 (351)
T ss_dssp CGGGEEE
T ss_pred CCceEEe
Confidence 444443
|
| >1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-62 Score=508.65 Aligned_cols=305 Identities=41% Similarity=0.674 Sum_probs=283.5
Q ss_pred CCCeEEEecCCCHhHHHHhccc-CcEEEccCCCHhHHhhhcCCceEEEEcCCCCCCHHHHhccCCCceEEEEcCcccCcc
Q 007512 57 SKPTVLIAEKLGQAGLDLLNEF-ANVDCAYNLSPEELCTKISLCDALIVRSGTKVNRDVFESSAGRLKVVGRAGVGIDNV 135 (600)
Q Consensus 57 ~~~~ilv~~~l~~~~~~~l~~~-~~v~~~~~~~~~el~~~i~~~d~li~~~~~~~~~~~l~~~~~~Lk~I~~~g~G~d~i 135 (600)
.||||++++.+.++..+.|++. .++.+....+.+++.+.+.++|++++++.+++++++++++ |+||+|++.|+|+|||
T Consensus 2 ~~~~il~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~-~~Lk~I~~~~~G~d~i 80 (307)
T 1wwk_A 2 KRMKVLVAAPLHEKAIQVLKDAGLEVIYEEYPDEDRLVELVKDVEAIIVRSKPKVTRRVIESA-PKLKVIARAGVGLDNI 80 (307)
T ss_dssp --CEEEECSCCCHHHHHHHHHTTCEEEECSSCCHHHHHHHSTTCSEEEESSCSCBCHHHHTTC-TTCCEEEESSSCCTTB
T ss_pred CceEEEEeCCCCHHHHHHHHhCCeEEEeCCCCCHHHHHHHhcCCEEEEEcCCCCCCHHHHhhC-CCCeEEEECCcccccc
Confidence 3689999999998888888774 3454444467888999999999999987667999999987 6999999999999999
Q ss_pred ChhHHHhCCceeecCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCccccccccceeccCCEEEEEecChhHHHHHHH
Q 007512 136 DLAAATEFGCLVVNAPTANTVAAAEHGIALLAAMARNVAQADASVKAGKWQRNKYVGVSLVGKTLAVLGFGKVGSEVARR 215 (600)
Q Consensus 136 D~~aa~~~GI~V~n~p~~~~~~vAE~~l~lll~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktiGIIGlG~IG~~vA~~ 215 (600)
|+++|+++||.|+|+||+|+.+||||++++||+++|+++.+++.+++|.|.+..+.+.++.|+||||||+|.||+++|++
T Consensus 81 d~~~~~~~gi~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~~~~~~~l~g~~vgIiG~G~IG~~~A~~ 160 (307)
T 1wwk_A 81 DVEAAKEKGIEVVNAPAASSRSVAELAVGLMFSVARKIAFADRKMREGVWAKKEAMGIELEGKTIGIIGFGRIGYQVAKI 160 (307)
T ss_dssp CHHHHHHHTCEEECCGGGGHHHHHHHHHHHHHHHHTTHHHHHHHHTTTCCCTTTCCBCCCTTCEEEEECCSHHHHHHHHH
T ss_pred CHHHHHhCCcEEEECCCCChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCccCcCCcccCCceEEEEccCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999864457889999999999999999999999
Q ss_pred hhcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEecCCCccccccccHhHhccCCCceEEEEccCCccccHH
Q 007512 216 AKGLGMHVIAHDPYAPADRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVIDEE 295 (600)
Q Consensus 216 l~~~g~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Pl~~~t~~li~~~~l~~mk~gailvNvarg~ivde~ 295 (600)
+++|||+|++||++...+.+.+.|+...++++++++||+|++|+|++++|+++++++.|+.||+|++|||++||+++|++
T Consensus 161 l~~~G~~V~~~d~~~~~~~~~~~g~~~~~l~ell~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lin~arg~~vd~~ 240 (307)
T 1wwk_A 161 ANALGMNILLYDPYPNEERAKEVNGKFVDLETLLKESDVVTIHVPLVESTYHLINEERLKLMKKTAILINTSRGPVVDTN 240 (307)
T ss_dssp HHHTTCEEEEECSSCCHHHHHHTTCEECCHHHHHHHCSEEEECCCCSTTTTTCBCHHHHHHSCTTCEEEECSCGGGBCHH
T ss_pred HHHCCCEEEEECCCCChhhHhhcCccccCHHHHHhhCCEEEEecCCChHHhhhcCHHHHhcCCCCeEEEECCCCcccCHH
Confidence 99999999999999866666778888789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhHhcCCceEEEEeccCCCCCCCCCccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcC
Q 007512 296 ALVRALDSGRVAQAALDVFTEEPPPADSKLVQHERVTVTPHLGASTMEAQEGVAIEIAEAVVGALKG 362 (600)
Q Consensus 296 aL~~aL~~g~i~ga~lDv~~~EP~~~~~~L~~~~nvilTPH~~~~t~ea~~~~~~~~~~~l~~~l~g 362 (600)
+|.++|++|+|+||++|||+.||+++++|||+++|+++|||++++|.|+++++...+++|+.+|++|
T Consensus 241 aL~~aL~~g~i~ga~lDv~~~eP~~~~~~L~~~~nviltPh~~~~t~~~~~~~~~~~~~nl~~~~~g 307 (307)
T 1wwk_A 241 ALVKALKEGWIAGAGLDVFEEEPLPKDHPLTKFDNVVLTPHIGASTVEAQERAGVEVAEKVVKILKG 307 (307)
T ss_dssp HHHHHHHHTSSSEEEESCCSSSSCCTTCGGGGCTTEEECSSCTTCBHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhCCCcEEEEecCCCCCCCCCChHHhCCCEEECCccccCcHHHHHHHHHHHHHHHHHHHcC
Confidence 9999999999999999999999998899999999999999999999999999999999999999976
|
| >3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-63 Score=520.82 Aligned_cols=310 Identities=26% Similarity=0.359 Sum_probs=272.1
Q ss_pred CCeEEEecCCCHhHHHHhcccC-cEEEccCCCHhHHhhhcCCceEEEEcCCCCCCHHHH-hccCCCceEEEEcCcccCcc
Q 007512 58 KPTVLIAEKLGQAGLDLLNEFA-NVDCAYNLSPEELCTKISLCDALIVRSGTKVNRDVF-ESSAGRLKVVGRAGVGIDNV 135 (600)
Q Consensus 58 ~~~ilv~~~l~~~~~~~l~~~~-~v~~~~~~~~~el~~~i~~~d~li~~~~~~~~~~~l-~~~~~~Lk~I~~~g~G~d~i 135 (600)
++|||+++++.++.++.|++.+ ++++.... +...+.+.++|+++++. .++ +++| +++ |+||||+++|+|+|||
T Consensus 1 m~kil~~~~~~~~~~~~L~~~~~~~~~~~~~--~~~~~~~~~ad~l~~~~-~~~-~~~l~~~~-~~Lk~I~~~~~G~d~i 75 (324)
T 3evt_A 1 MSLVLMAQATKPEQLQQLQTTYPDWTFKDAA--AVTAADYDQIEVMYGNH-PLL-KTILARPT-NQLKFVQVISAGVDYL 75 (324)
T ss_dssp -CEEEECSCCCHHHHHHHHHHCTTCEEEETT--SCCTTTGGGEEEEESCC-THH-HHHHHSTT-CCCCEEECSSSCCTTS
T ss_pred CcEEEEecCCCHHHHHHHHhhCCCeEEecCC--ccChHHhCCcEEEEECC-cCh-HHHHHhhC-CCceEEEECCcccccc
Confidence 4789999999999999998754 44432211 11123567899988754 457 8999 666 6999999999999999
Q ss_pred ChhHHHhCCceeecCCCCChHHHHHHHHHHHHHHHhchHHH-HHHHHcCccccccccceeccCCEEEEEecChhHHHHHH
Q 007512 136 DLAAATEFGCLVVNAPTANTVAAAEHGIALLAAMARNVAQA-DASVKAGKWQRNKYVGVSLVGKTLAVLGFGKVGSEVAR 214 (600)
Q Consensus 136 D~~aa~~~GI~V~n~p~~~~~~vAE~~l~lll~~~R~i~~~-~~~~~~g~W~~~~~~g~~l~gktiGIIGlG~IG~~vA~ 214 (600)
|+++|+++||.|+|+||+++.+||||++++||+++|+++++ ++.+++|+|.+.. .+.+++||||||||+|.||+++|+
T Consensus 76 d~~~~~~~gI~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~~~~W~~~~-~~~~l~gktvGIiGlG~IG~~vA~ 154 (324)
T 3evt_A 76 PLKALQAAGVVVANTSGIHADAISESVLAAMLSVVRGYHAAWLNQRGARQWALPM-TTSTLTGQQLLIYGTGQIGQSLAA 154 (324)
T ss_dssp CHHHHHHTTCEEECCTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTTCCSSCSS-CCCCSTTCEEEEECCSHHHHHHHH
T ss_pred CHHHHHHCCcEEEECCCcCchHHHHHHHHHHHHHHhChhHHHHHHHhcCCcccCC-CCccccCCeEEEECcCHHHHHHHH
Confidence 99999999999999999999999999999999999999999 9999999998754 588999999999999999999999
Q ss_pred HhhcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEecCCCccccccccHhHhccCCCceEEEEccCCccccH
Q 007512 215 RAKGLGMHVIAHDPYAPADRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVIDE 294 (600)
Q Consensus 215 ~l~~~g~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Pl~~~t~~li~~~~l~~mk~gailvNvarg~ivde 294 (600)
++++|||+|++||++..........+...++++++++||+|++|+|++++|+++++++.|+.||+|++|||+|||+++|+
T Consensus 155 ~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~l~ell~~aDvV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~ 234 (324)
T 3evt_A 155 KASALGMHVIGVNTTGHPADHFHETVAFTATADALATANFIVNALPLTPTTHHLFSTELFQQTKQQPMLINIGRGPAVDT 234 (324)
T ss_dssp HHHHTTCEEEEEESSCCCCTTCSEEEEGGGCHHHHHHCSEEEECCCCCGGGTTCBSHHHHHTCCSCCEEEECSCGGGBCH
T ss_pred HHHhCCCEEEEECCCcchhHhHhhccccCCHHHHHhhCCEEEEcCCCchHHHHhcCHHHHhcCCCCCEEEEcCCChhhhH
Confidence 99999999999998763221111123345899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhHhcCCceEEEEeccCCCCCCCCCccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCC-CCCccccCCC
Q 007512 295 EALVRALDSGRVAQAALDVFTEEPPPADSKLVQHERVTVTPHLGASTMEAQEGVAIEIAEAVVGALKGE-LAATAVNAPM 373 (600)
Q Consensus 295 ~aL~~aL~~g~i~ga~lDv~~~EP~~~~~~L~~~~nvilTPH~~~~t~ea~~~~~~~~~~~l~~~l~g~-~~~~~vn~~~ 373 (600)
++|+++|++|+|+||++|||+.||++.++|||++|||++|||+|++|.|+++++...+++|+.+|++|+ ++.|.||...
T Consensus 235 ~aL~~aL~~g~i~gA~lDV~~~EPl~~~~pL~~~~nvilTPHia~~t~~~~~~~~~~~~~nl~~~l~~~~~~~n~V~~~~ 314 (324)
T 3evt_A 235 TALMTALDHHQLSMAALDVTEPEPLPTDHPLWQRDDVLITPHISGQIAHFRATVFPIFAANFAQFVKDGTLVRNQVDLNR 314 (324)
T ss_dssp HHHHHHHHTTSCSEEEESSCSSSSCCTTCGGGGCSSEEECCSCTTCCCCHHHHHHHHHHHHHHHHHHHSCCCSCBCC---
T ss_pred HHHHHHHHhCCceEEEeCCCCCCCCCCCChhhcCCCEEEcCccccChHHHHHHHHHHHHHHHHHHHhCCCCCCceECccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999754 6789998653
|
| >2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-60 Score=497.87 Aligned_cols=305 Identities=36% Similarity=0.531 Sum_probs=283.7
Q ss_pred CCCeEEEecCCCHhHHHHhcccC-cEEEccCCCHhHHhhhcCCceEEEEcCCCCCCHHHHhccCCCceEEEEcCcccCcc
Q 007512 57 SKPTVLIAEKLGQAGLDLLNEFA-NVDCAYNLSPEELCTKISLCDALIVRSGTKVNRDVFESSAGRLKVVGRAGVGIDNV 135 (600)
Q Consensus 57 ~~~~ilv~~~l~~~~~~~l~~~~-~v~~~~~~~~~el~~~i~~~d~li~~~~~~~~~~~l~~~~~~Lk~I~~~g~G~d~i 135 (600)
.++||++++.+.+...+.|++.+ ++.+....+.+++.+.++++|++++++.+++++++++++ |+||+|++.|+|+|||
T Consensus 4 ~~mkil~~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~-~~Lk~I~~~~~G~d~i 82 (313)
T 2ekl_A 4 YTVKALITDPIDEILIKTLREKGIQVDYMPEISKEELLNIIGNYDIIVVRSRTKVTKDVIEKG-KKLKIIARAGIGLDNI 82 (313)
T ss_dssp CCCEEEECSCCCHHHHHHHHHTTCEEEECTTCCHHHHHHHGGGCSEEEECSSSCBCHHHHHHC-TTCCEEEECSSCCTTB
T ss_pred cceEEEEECCCCHHHHHHHHhCCcEEEeCCCCCHHHHHHHhcCCeEEEEcCCCCCCHHHHhhC-CCCeEEEEcCCCCCcc
Confidence 35789999999998888888753 554444567889999999999999987778999999997 6999999999999999
Q ss_pred ChhHHHhCCceeecCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCccccccccceeccCCEEEEEecChhHHHHHHH
Q 007512 136 DLAAATEFGCLVVNAPTANTVAAAEHGIALLAAMARNVAQADASVKAGKWQRNKYVGVSLVGKTLAVLGFGKVGSEVARR 215 (600)
Q Consensus 136 D~~aa~~~GI~V~n~p~~~~~~vAE~~l~lll~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktiGIIGlG~IG~~vA~~ 215 (600)
|+++|+++||.|+|+||+|+.+||||++++||+++|+++++++.+++|.|. .+.+.++.|+||||||+|.||+++|++
T Consensus 83 d~~~~~~~gi~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~--~~~~~~l~g~~vgIIG~G~IG~~~A~~ 160 (313)
T 2ekl_A 83 DTEEAEKRNIKVVYAPGASTDSAVELTIGLMIAAARKMYTSMALAKSGIFK--KIEGLELAGKTIGIVGFGRIGTKVGII 160 (313)
T ss_dssp CHHHHHHTTCEEECCTTTTHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCC--CCCCCCCTTCEEEEESCSHHHHHHHHH
T ss_pred CHHHHHhCCeEEEeCCCCCchHHHHHHHHHHHHHHhCHHHHHHHHHcCCCC--CCCCCCCCCCEEEEEeeCHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999996 346889999999999999999999999
Q ss_pred hhcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEecCCCccccccccHhHhccCCCceEEEEccCCccccHH
Q 007512 216 AKGLGMHVIAHDPYAPADRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVIDEE 295 (600)
Q Consensus 216 l~~~g~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Pl~~~t~~li~~~~l~~mk~gailvNvarg~ivde~ 295 (600)
+++|||+|++||++.....+.+.|+...++++++++||+|++|+|++++|+++++++.++.||+|++|||++||+++|++
T Consensus 161 l~~~G~~V~~~d~~~~~~~~~~~g~~~~~l~ell~~aDvVvl~~P~~~~t~~li~~~~l~~mk~ga~lIn~arg~~vd~~ 240 (313)
T 2ekl_A 161 ANAMGMKVLAYDILDIREKAEKINAKAVSLEELLKNSDVISLHVTVSKDAKPIIDYPQFELMKDNVIIVNTSRAVAVNGK 240 (313)
T ss_dssp HHHTTCEEEEECSSCCHHHHHHTTCEECCHHHHHHHCSEEEECCCCCTTSCCSBCHHHHHHSCTTEEEEESSCGGGBCHH
T ss_pred HHHCCCEEEEECCCcchhHHHhcCceecCHHHHHhhCCEEEEeccCChHHHHhhCHHHHhcCCCCCEEEECCCCcccCHH
Confidence 99999999999998866566778887779999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhHhcCCceEEEEeccCCCCCCCCC---ccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCC
Q 007512 296 ALVRALDSGRVAQAALDVFTEEPPPADS---KLVQHERVTVTPHLGASTMEAQEGVAIEIAEAVVGALKGELA 365 (600)
Q Consensus 296 aL~~aL~~g~i~ga~lDv~~~EP~~~~~---~L~~~~nvilTPH~~~~t~ea~~~~~~~~~~~l~~~l~g~~~ 365 (600)
+|.++|++|+++||++|||+.||++ ++ |||++||+++|||++++|.|+++++...+++|+.+|++|++.
T Consensus 241 aL~~aL~~g~i~ga~lDv~~~eP~~-~~~~~~L~~~~nviltPH~~~~t~~~~~~~~~~~~~n~~~~~~g~~l 312 (313)
T 2ekl_A 241 ALLDYIKKGKVYAYATDVFWNEPPK-EEWELELLKHERVIVTTHIGAQTKEAQKRVAEMTTQNLLNAMKELGM 312 (313)
T ss_dssp HHHHHHHTTCEEEEEESCCSSSSCC-SHHHHHHHHSTTEEECCSCTTCSHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCCcEEEEecCCCCCCC-CcccchHhhCCCEEECCccCcCcHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 9999999999999999999999987 66 999999999999999999999999999999999999998763
|
| >1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-60 Score=503.79 Aligned_cols=309 Identities=27% Similarity=0.380 Sum_probs=275.5
Q ss_pred CeEEEecC--CCHhHHHHhcccC---cEEEccCCCHhHHhhhcCCceEEEEcCCCCCCHHHHhccCCC--ceEEEEcCcc
Q 007512 59 PTVLIAEK--LGQAGLDLLNEFA---NVDCAYNLSPEELCTKISLCDALIVRSGTKVNRDVFESSAGR--LKVVGRAGVG 131 (600)
Q Consensus 59 ~~ilv~~~--l~~~~~~~l~~~~---~v~~~~~~~~~el~~~i~~~d~li~~~~~~~~~~~l~~~~~~--Lk~I~~~g~G 131 (600)
|||+++.. ..++.++.|++.. ++.+......+++.+.+.++|++++++.+++++++++++ |+ ||+|++.|+|
T Consensus 2 mkil~~~~~~~~~~~~~~l~~~~p~~~v~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~-~~~~Lk~I~~~~~G 80 (333)
T 1j4a_A 2 TKIFAYAIREDEKPFLKEWEDAHKDVEVEYTDKLLTPETVALAKGADGVVVYQQLDYIAETLQAL-ADNGITKMSLRNVG 80 (333)
T ss_dssp CEEEECSCCGGGHHHHHHHHHTCTTSEEEECSSCCCTTTGGGGTTCSEEEECCSSCBCHHHHHHH-HHTTCCEEEESSSC
T ss_pred cEEEEEecCccCHHHHHHHHhhCCCcEEEECCCCCcHHHHHHhcCCcEEEEcCCCCCCHHHHHhc-cccCCeEEEECCcc
Confidence 58888653 3445566666432 555443333457888899999999987778999999987 46 9999999999
Q ss_pred cCccChhHHHhCCceeecCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCccccccccceeccCCEEEEEecChhHHH
Q 007512 132 IDNVDLAAATEFGCLVVNAPTANTVAAAEHGIALLAAMARNVAQADASVKAGKWQRNKYVGVSLVGKTLAVLGFGKVGSE 211 (600)
Q Consensus 132 ~d~iD~~aa~~~GI~V~n~p~~~~~~vAE~~l~lll~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktiGIIGlG~IG~~ 211 (600)
+||||+++|+++||.|+|+||+++.+||||++++||+++|+++++++.+++|.|.+....+.++.|+||||||+|.||++
T Consensus 81 ~d~id~~~~~~~gi~v~n~p~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~l~g~~vgIiG~G~IG~~ 160 (333)
T 1j4a_A 81 VDNIDMAKAKELGFQITNVPVYSPNAIAEHAAIQAARILRQDKAMDEKVARHDLRWAPTIGREVRDQVVGVVGTGHIGQV 160 (333)
T ss_dssp CTTBCHHHHHHTTCEEECCCCSCHHHHHHHHHHHHHHHHHTHHHHHHHHHTTBCCCTTCCBCCGGGSEEEEECCSHHHHH
T ss_pred cccccHHHHHhCCCEEEeCCCCCchHHHHHHHHHHHHHHcCHHHHHHHHHcCCCccCCcccccCCCCEEEEEccCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999975556788999999999999999999
Q ss_pred HHHHhhcCCCEEEEECCCCChhHHHHcCCccc-CHHHHhccCCEEEEecCCCccccccccHhHhccCCCceEEEEccCCc
Q 007512 212 VARRAKGLGMHVIAHDPYAPADRARAIGVDLV-SFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGG 290 (600)
Q Consensus 212 vA~~l~~~g~~V~~~d~~~~~~~a~~~g~~~~-~l~ell~~aDvV~l~~Pl~~~t~~li~~~~l~~mk~gailvNvarg~ 290 (600)
+|+++++|||+|++||++.... +.+ .+..+ ++++++++||+|++|+|++++|+++++++.|+.||+|++|||++||+
T Consensus 161 ~A~~l~~~G~~V~~~d~~~~~~-~~~-~~~~~~~l~ell~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lIn~arg~ 238 (333)
T 1j4a_A 161 FMQIMEGFGAKVITYDIFRNPE-LEK-KGYYVDSLDDLYKQADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVSRGP 238 (333)
T ss_dssp HHHHHHHTTCEEEEECSSCCHH-HHH-TTCBCSCHHHHHHHCSEEEECSCCCGGGTTCBSHHHHHHSCTTEEEEECSCGG
T ss_pred HHHHHHHCCCEEEEECCCcchh-HHh-hCeecCCHHHHHhhCCEEEEcCCCcHHHHHHHhHHHHhhCCCCcEEEECCCCc
Confidence 9999999999999999987544 333 35666 89999999999999999999999999999999999999999999999
Q ss_pred cccHHHHHHhHhcCCceEEEEeccCCCC--CCCCC-----------ccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHH
Q 007512 291 VIDEEALVRALDSGRVAQAALDVFTEEP--PPADS-----------KLVQHERVTVTPHLGASTMEAQEGVAIEIAEAVV 357 (600)
Q Consensus 291 ivde~aL~~aL~~g~i~ga~lDv~~~EP--~~~~~-----------~L~~~~nvilTPH~~~~t~ea~~~~~~~~~~~l~ 357 (600)
++|+++|+++|++|+|+||+||||+.|| ++.++ |||++|||++|||+|++|.|+++++...+++|+.
T Consensus 239 ~vd~~aL~~aL~~g~i~gA~LDV~~~EP~~l~~~~~~~~~~~p~~~~L~~~~nvilTPHia~~t~~~~~~~~~~~~~nl~ 318 (333)
T 1j4a_A 239 LVDTDAVIRGLDSGKIFGYAMDVYEGEVGIFNEDWEGKEFPDARLADLIARPNVLVTPKTAFYTTHAVRNMVVKAFDNNL 318 (333)
T ss_dssp GBCHHHHHHHHHHTSEEEEEESCCTTCTTTTTSBCTTSCCSCHHHHHHHHCTTEEECSSCTTCBHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHhCCceEEEEecCCCCCCccccccccccCCccchhhHHhCCCEEECCccccCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999 34433 6999999999999999999999999999999999
Q ss_pred HHHcCCCCCcccc
Q 007512 358 GALKGELAATAVN 370 (600)
Q Consensus 358 ~~l~g~~~~~~vn 370 (600)
+|++|+.+.+.||
T Consensus 319 ~~~~g~~~~~~v~ 331 (333)
T 1j4a_A 319 ELVEGKEAETPVK 331 (333)
T ss_dssp HHHTTCCCSSBCC
T ss_pred HHHcCCCCCcccc
Confidence 9999999888876
|
| >1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-60 Score=496.27 Aligned_cols=306 Identities=29% Similarity=0.472 Sum_probs=283.2
Q ss_pred CCeEEEecCCCHhHHHHhcccCcEEEcc---CCCHhHHhhhcCCceEEEEcCCCCCCHHHHhccCCC-ceEEEEcCcccC
Q 007512 58 KPTVLIAEKLGQAGLDLLNEFANVDCAY---NLSPEELCTKISLCDALIVRSGTKVNRDVFESSAGR-LKVVGRAGVGID 133 (600)
Q Consensus 58 ~~~ilv~~~l~~~~~~~l~~~~~v~~~~---~~~~~el~~~i~~~d~li~~~~~~~~~~~l~~~~~~-Lk~I~~~g~G~d 133 (600)
+++|++++.+.++.++.|++..++.+.. ..+++++.+.+.++|++++++.+++++++++++ |+ ||||++.|+|+|
T Consensus 1 m~~vl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~-~~~Lk~I~~~~~G~d 79 (320)
T 1gdh_A 1 KKKILITWPLPEAAMARARESYDVIAHGDDPKITIDEMIETAKSVDALLITLNEKCRKEVIDRI-PENIKCISTYSIGFD 79 (320)
T ss_dssp CCEEEESSCCCHHHHHHHHTTSEEEECCSTTCCCHHHHHHHHTTCSEEEEETTSCBCHHHHHHS-CTTCCEEEEESSCCT
T ss_pred CcEEEEcCCCCHHHHHHHHhcCCEEEecCCCCCCHHHHHHHhcCCEEEEECCCCCCCHHHHHhC-CccceEEEECCcccc
Confidence 3689999999999899998766666532 257789999999999999987778999999998 58 999999999999
Q ss_pred ccChhHHHhCCceeecCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCccccc---cccceeccCCEEEEEecChhHH
Q 007512 134 NVDLAAATEFGCLVVNAPTANTVAAAEHGIALLAAMARNVAQADASVKAGKWQRN---KYVGVSLVGKTLAVLGFGKVGS 210 (600)
Q Consensus 134 ~iD~~aa~~~GI~V~n~p~~~~~~vAE~~l~lll~~~R~i~~~~~~~~~g~W~~~---~~~g~~l~gktiGIIGlG~IG~ 210 (600)
|||+++|+++||.|+|+||+|+.+||||++++||+++|+++++++.+++|.|.+. .+.+.++.|+||||||+|.||+
T Consensus 80 ~id~~~~~~~gi~v~n~p~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~l~g~~vgIIG~G~IG~ 159 (320)
T 1gdh_A 80 HIDLDACKARGIKVGNAPHGVTVATAEIAMLLLLGSARRAGEGEKMIRTRSWPGWEPLELVGEKLDNKTLGIYGFGSIGQ 159 (320)
T ss_dssp TBCHHHHHHTTCEEECCCCSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCCTTTTCBCCCTTCEEEEECCSHHHH
T ss_pred cccHHHHHhCCcEEEEcCCCCHHHHHHHHHHHHHHHHccHHHHHHHHHcCCCCccccccccCcCCCCCEEEEECcCHHHH
Confidence 9999999999999999999999999999999999999999999999999999732 2467899999999999999999
Q ss_pred HHHHHhhcCCCEEEEECC-CCChhHHHHcCCccc-CHHHHhccCCEEEEecCCCccccccccHhHhccCCCceEEEEccC
Q 007512 211 EVARRAKGLGMHVIAHDP-YAPADRARAIGVDLV-SFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVAR 288 (600)
Q Consensus 211 ~vA~~l~~~g~~V~~~d~-~~~~~~a~~~g~~~~-~l~ell~~aDvV~l~~Pl~~~t~~li~~~~l~~mk~gailvNvar 288 (600)
++|+++++|||+|++||+ +.....+.+.|+... ++++++++||+|++|+|++++|+++++++.|+.||+|++|||++|
T Consensus 160 ~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVil~~p~~~~t~~~i~~~~l~~mk~gailIn~ar 239 (320)
T 1gdh_A 160 ALAKRAQGFDMDIDYFDTHRASSSDEASYQATFHDSLDSLLSVSQFFSLNAPSTPETRYFFNKATIKSLPQGAIVVNTAR 239 (320)
T ss_dssp HHHHHHHTTTCEEEEECSSCCCHHHHHHHTCEECSSHHHHHHHCSEEEECCCCCTTTTTCBSHHHHTTSCTTEEEEECSC
T ss_pred HHHHHHHHCCCEEEEECCCCcChhhhhhcCcEEcCCHHHHHhhCCEEEEeccCchHHHhhcCHHHHhhCCCCcEEEECCC
Confidence 999999999999999999 876656667788777 899999999999999999999999999999999999999999999
Q ss_pred CccccHHHHHHhHhcCCceEEEEeccCCCCCCCCCccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCC
Q 007512 289 GGVIDEEALVRALDSGRVAQAALDVFTEEPPPADSKLVQHERVTVTPHLGASTMEAQEGVAIEIAEAVVGALKGELAA 366 (600)
Q Consensus 289 g~ivde~aL~~aL~~g~i~ga~lDv~~~EP~~~~~~L~~~~nvilTPH~~~~t~ea~~~~~~~~~~~l~~~l~g~~~~ 366 (600)
|+++|+++|.++|++|+|+||++|||+.|| +.++|||+++|+++|||++++|.|+++++...+ +|+.+|++|+++.
T Consensus 240 g~~vd~~aL~~aL~~g~i~gA~lDv~~~eP-~~~~~L~~~~nviltPH~~~~t~~~~~~~~~~~-~nl~~~~~g~~~~ 315 (320)
T 1gdh_A 240 GDLVDNELVVAALEAGRLAYAGFDVFAGEP-NINEGYYDLPNTFLFPHIGSAATQAREDMAHQA-NDLIDALFGGADM 315 (320)
T ss_dssp GGGBCHHHHHHHHHHTSEEEEEESCCTTTT-SCCTTGGGCTTEEECSSCTTCBHHHHHHHHHHH-HHHHHHHHTTSCC
T ss_pred CcccCHHHHHHHHHhCCCcEEEEeCCCCCC-CCCChhhhCCCEEECCcCCcCcHHHHHHHHHHH-HHHHHHHcCCCCc
Confidence 999999999999999999999999999999 788999999999999999999999999999999 9999999997654
|
| >1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=8.6e-61 Score=504.34 Aligned_cols=311 Identities=25% Similarity=0.388 Sum_probs=275.1
Q ss_pred CeEEEec--CCCHhHHHHhcc-cC-cEEEccCCCHhHHhhhcCCceEEEEcCCCCCCHHHHhccCCC--ceEEEEcCccc
Q 007512 59 PTVLIAE--KLGQAGLDLLNE-FA-NVDCAYNLSPEELCTKISLCDALIVRSGTKVNRDVFESSAGR--LKVVGRAGVGI 132 (600)
Q Consensus 59 ~~ilv~~--~l~~~~~~~l~~-~~-~v~~~~~~~~~el~~~i~~~d~li~~~~~~~~~~~l~~~~~~--Lk~I~~~g~G~ 132 (600)
|||++++ ...++.++.|.+ .. ++.+......+++.+.++++|++++++.+++++++++++ |+ ||+|+++|+|+
T Consensus 1 Mkil~~~~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~-~~~~Lk~I~~~~~G~ 79 (333)
T 1dxy_A 1 MKIIAYGARVDEIQYFKQWAKDTGNTLEYHTEFLDENTVEWAKGFDGINSLQTTPYAAGVFEKM-HAYGIKFLTIRNVGT 79 (333)
T ss_dssp CEEEECSCCTTTHHHHHHHHHHHCCEEEECSSCCCTTGGGGGTTCSEEEECCSSCBCHHHHHHH-HHTTCCEEEESSSCC
T ss_pred CEEEEEeccccCHHHHHHHHHhCCeEEEEcCCCChHHHHHHhcCCeEEEEcCCCCCCHHHHHhC-cccCceEEEEcCccc
Confidence 4788754 445556666644 22 455444334457778899999999987788999999987 46 99999999999
Q ss_pred CccChhHHHhCCceeecCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCcccc-ccccceeccCCEEEEEecChhHHH
Q 007512 133 DNVDLAAATEFGCLVVNAPTANTVAAAEHGIALLAAMARNVAQADASVKAGKWQR-NKYVGVSLVGKTLAVLGFGKVGSE 211 (600)
Q Consensus 133 d~iD~~aa~~~GI~V~n~p~~~~~~vAE~~l~lll~~~R~i~~~~~~~~~g~W~~-~~~~g~~l~gktiGIIGlG~IG~~ 211 (600)
||||+++|+++||.|+|+||+++.+||||++++||+++|+++++++.+++|.|.+ ....+.++.|+||||||+|.||+.
T Consensus 80 d~id~~~~~~~gI~v~n~p~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~l~g~~vgIiG~G~IG~~ 159 (333)
T 1dxy_A 80 DNIDMTAMKQYGIRLSNVPAYSPAAIAEFALTDTLYLLRNMGKVQAQLQAGDYEKAGTFIGKELGQQTVGVMGTGHIGQV 159 (333)
T ss_dssp TTBCHHHHHHTTCEEECCTTSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCHHHHTCCCCCCGGGSEEEEECCSHHHHH
T ss_pred CccCHHHHHhCCCEEEeCCCCCchHHHHHHHHHHHHHhhhHHHHHHHHHcCCcccccCCCccCCCCCEEEEECcCHHHHH
Confidence 9999999999999999999999999999999999999999999999999999964 345688999999999999999999
Q ss_pred HHHHhhcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEecCCCccccccccHhHhccCCCceEEEEccCCcc
Q 007512 212 VARRAKGLGMHVIAHDPYAPADRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGV 291 (600)
Q Consensus 212 vA~~l~~~g~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Pl~~~t~~li~~~~l~~mk~gailvNvarg~i 291 (600)
+|+++++|||+|++||++.... +. ..+.+.++++++++||+|++|+|++++|+++++++.|+.||+|++|||+|||++
T Consensus 160 ~A~~l~~~G~~V~~~d~~~~~~-~~-~~~~~~~l~ell~~aDvV~~~~P~~~~t~~li~~~~l~~mk~ga~lIn~srg~~ 237 (333)
T 1dxy_A 160 AIKLFKGFGAKVIAYDPYPMKG-DH-PDFDYVSLEDLFKQSDVIDLHVPGIEQNTHIINEAAFNLMKPGAIVINTARPNL 237 (333)
T ss_dssp HHHHHHHTTCEEEEECSSCCSS-CC-TTCEECCHHHHHHHCSEEEECCCCCGGGTTSBCHHHHHHSCTTEEEEECSCTTS
T ss_pred HHHHHHHCCCEEEEECCCcchh-hH-hccccCCHHHHHhcCCEEEEcCCCchhHHHHhCHHHHhhCCCCcEEEECCCCcc
Confidence 9999999999999999987433 22 235566899999999999999999999999999999999999999999999999
Q ss_pred ccHHHHHHhHhcCCceEEEEeccCCCCC--C--------CC---CccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHH
Q 007512 292 IDEEALVRALDSGRVAQAALDVFTEEPP--P--------AD---SKLVQHERVTVTPHLGASTMEAQEGVAIEIAEAVVG 358 (600)
Q Consensus 292 vde~aL~~aL~~g~i~ga~lDv~~~EP~--~--------~~---~~L~~~~nvilTPH~~~~t~ea~~~~~~~~~~~l~~ 358 (600)
+|+++|+++|++|+|+||+||||++||+ + .+ +|||++|||++|||+|++|.|+++++...+++|+.+
T Consensus 238 vd~~aL~~aL~~g~i~gA~LDV~~~EP~~~~~~~~~~~~~~~~~~pL~~~~nvi~TPHia~~t~e~~~~~~~~~~~nl~~ 317 (333)
T 1dxy_A 238 IDTQAMLSNLKSGKLAGVGIDTYEYETEDLLNLAKHGSFKDPLWDELLGMPNVVLSPHIAYYTETAVHNMVYFSLQHLVD 317 (333)
T ss_dssp BCHHHHHHHHHTTSEEEEEESSCTTHHHHHHHHHHHSSCCCHHHHHHHTCTTEEECSSCTTCSHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHhCCccEEEEecCCCCCCcccccccccccCccchhHHhcCCCEEECCccccChHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999983 1 12 589999999999999999999999999999999999
Q ss_pred HHcCCCCCccccCC
Q 007512 359 ALKGELAATAVNAP 372 (600)
Q Consensus 359 ~l~g~~~~~~vn~~ 372 (600)
|++|+.+.+.||.|
T Consensus 318 ~~~g~~~~~~v~~~ 331 (333)
T 1dxy_A 318 FLTKGETSTEVTGP 331 (333)
T ss_dssp HHHHSCCTTEECC-
T ss_pred HHcCCCCCceeCCC
Confidence 99999999999876
|
| >2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.6e-60 Score=491.93 Aligned_cols=304 Identities=35% Similarity=0.521 Sum_probs=279.6
Q ss_pred CeEEEecCCCHhHHHHhccc-CcEEEcc--CCCHhHHhhhcCCceEEEEcCCCCCCHHHHhccCCCceEEEEcCcccCcc
Q 007512 59 PTVLIAEKLGQAGLDLLNEF-ANVDCAY--NLSPEELCTKISLCDALIVRSGTKVNRDVFESSAGRLKVVGRAGVGIDNV 135 (600)
Q Consensus 59 ~~ilv~~~l~~~~~~~l~~~-~~v~~~~--~~~~~el~~~i~~~d~li~~~~~~~~~~~l~~~~~~Lk~I~~~g~G~d~i 135 (600)
||||+++.+.++.++.|++. .++.+.. ..+.+++.+.++++|++++++.+++++++++++ |+||+|++.|+|+|||
T Consensus 1 ~~vl~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~-~~Lk~i~~~~~G~d~i 79 (311)
T 2cuk_A 1 MRVLVTRTLPGKALDRLRERGLEVEVHRGLFLPKAELLKRVEGAVGLIPTVEDRIDAEVMDRA-KGLKVIACYSVGVDHV 79 (311)
T ss_dssp CEEEESSCCSSSTTHHHHHTTCEEEECCSSCCCHHHHHHHHTTCSEEECCTTSCBCHHHHHHS-TTCCEEECSSSCCTTB
T ss_pred CEEEEeCCCCHHHHHHHHhcCCeEEEecCCCCCHHHHHHHhcCCeEEEEcCCCCCCHHHHhhC-CCCeEEEECCcCcccc
Confidence 68999998888888888876 5776532 346788999999999999887778999999997 6999999999999999
Q ss_pred ChhHHHhCCceeecCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCccccc---cccceeccCCEEEEEecChhHHHH
Q 007512 136 DLAAATEFGCLVVNAPTANTVAAAEHGIALLAAMARNVAQADASVKAGKWQRN---KYVGVSLVGKTLAVLGFGKVGSEV 212 (600)
Q Consensus 136 D~~aa~~~GI~V~n~p~~~~~~vAE~~l~lll~~~R~i~~~~~~~~~g~W~~~---~~~g~~l~gktiGIIGlG~IG~~v 212 (600)
|+++|+++||.|+|+||+|+.+||||++++||+++|+++.+++.+++|.|.+. .+.+.++.|+||||||+|.||+++
T Consensus 80 d~~~~~~~gi~v~n~~~~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~l~g~~vgIIG~G~IG~~~ 159 (311)
T 2cuk_A 80 DLEAARERGIRVTHTPGVLTEATADLTLALLLAVARRVVEGAAYARDGLWKAWHPELLLGLDLQGLTLGLVGMGRIGQAV 159 (311)
T ss_dssp CHHHHHTTTCEEECCCSTTHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCCTTTTCBCCCTTCEEEEECCSHHHHHH
T ss_pred CHHHHHhCCcEEEECCCCChHHHHHHHHHHHHHHHcChHHHHHHHHcCCCCccccccccCcCCCCCEEEEEEECHHHHHH
Confidence 99999999999999999999999999999999999999999999999999642 235789999999999999999999
Q ss_pred HHHhhcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEecCCCccccccccHhHhccCCCceEEEEccCCccc
Q 007512 213 ARRAKGLGMHVIAHDPYAPADRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVI 292 (600)
Q Consensus 213 A~~l~~~g~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Pl~~~t~~li~~~~l~~mk~gailvNvarg~iv 292 (600)
|+++++|||+|++||++..... +...++++++++||+|++|+|++++|+++++++.++.||+|+++||++||+++
T Consensus 160 A~~l~~~G~~V~~~d~~~~~~~-----~~~~~l~ell~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lin~srg~~v 234 (311)
T 2cuk_A 160 AKRALAFGMRVVYHARTPKPLP-----YPFLSLEELLKEADVVSLHTPLTPETHRLLNRERLFAMKRGAILLNTARGALV 234 (311)
T ss_dssp HHHHHHTTCEEEEECSSCCSSS-----SCBCCHHHHHHHCSEEEECCCCCTTTTTCBCHHHHTTSCTTCEEEECSCGGGB
T ss_pred HHHHHHCCCEEEEECCCCcccc-----cccCCHHHHHhhCCEEEEeCCCChHHHhhcCHHHHhhCCCCcEEEECCCCCcc
Confidence 9999999999999999874322 34568999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHhHhcCCceEEEEeccCCCCCCCCCccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCccc
Q 007512 293 DEEALVRALDSGRVAQAALDVFTEEPPPADSKLVQHERVTVTPHLGASTMEAQEGVAIEIAEAVVGALKGELAATAV 369 (600)
Q Consensus 293 de~aL~~aL~~g~i~ga~lDv~~~EP~~~~~~L~~~~nvilTPH~~~~t~ea~~~~~~~~~~~l~~~l~g~~~~~~v 369 (600)
|+++|.++|+ |+|+||++|||+.||++.++|||+++|+++|||++++|.|+++++...+++|+.+|++|+.+.+.|
T Consensus 235 d~~aL~~aL~-g~i~ga~lDv~~~eP~~~~~~L~~~~nviltPh~~~~t~~~~~~~~~~~~~nl~~~~~g~~~~~~v 310 (311)
T 2cuk_A 235 DTEALVEALR-GHLFGAGLDVTDPEPLPPGHPLYALPNAVITPHIGSAGRTTRERMAEVAVENLLAVLEGREPPNPV 310 (311)
T ss_dssp CHHHHHHHHT-TTSSEEEESSCSSSSCCTTSGGGGCTTEEECCSCTTCBHHHHHHHHHHHHHHHHHHHTTCCCSSBC
T ss_pred CHHHHHHHHh-CcCCEEEEeeCCCCCCCCCChhhhCCCEEECCcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCCcc
Confidence 9999999999 999999999999999888999999999999999999999999999999999999999998776654
|
| >1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-60 Score=498.42 Aligned_cols=309 Identities=24% Similarity=0.347 Sum_probs=275.1
Q ss_pred CeEEEec--CCCHhHHHHhcccC--cEEEcc-CCCHhHHhhhcCCceEEEEcCCCCCCHHHHhccCCC--ceEEEEcCcc
Q 007512 59 PTVLIAE--KLGQAGLDLLNEFA--NVDCAY-NLSPEELCTKISLCDALIVRSGTKVNRDVFESSAGR--LKVVGRAGVG 131 (600)
Q Consensus 59 ~~ilv~~--~l~~~~~~~l~~~~--~v~~~~-~~~~~el~~~i~~~d~li~~~~~~~~~~~l~~~~~~--Lk~I~~~g~G 131 (600)
|||++++ ++.++.++.|.+.. ++.+.. ..+++++.+.++++|++++++.+++++++++++ |+ ||+|++.|+|
T Consensus 1 mki~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~-~~~~Lk~I~~~~~G 79 (331)
T 1xdw_A 1 MKVLCYGVRDVELPIFEACNKEFGYDIKCVPDYLNTKETAEMAAGFDAVILRGNCFANKQNLDIY-KKLGVKYILTRTAG 79 (331)
T ss_dssp CEEEECSCCTTTHHHHHHHGGGTCCEEEECSCCSCSHHHHHTTTTCSEEEECTTCCBCHHHHHHH-HHHTCCEEEESSSC
T ss_pred CEEEEEecCccCHHHHHHHHHhcCeEEEECCCCCCHHHHHHHhcCCeEEEEeCCCCCCHHHHhhC-cccCceEEEEcccc
Confidence 4788854 55666777775533 454433 235578888999999999987788999999987 57 9999999999
Q ss_pred cCccChhHHHhCCceeecCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCcccc-ccccceeccCCEEEEEecChhHH
Q 007512 132 IDNVDLAAATEFGCLVVNAPTANTVAAAEHGIALLAAMARNVAQADASVKAGKWQR-NKYVGVSLVGKTLAVLGFGKVGS 210 (600)
Q Consensus 132 ~d~iD~~aa~~~GI~V~n~p~~~~~~vAE~~l~lll~~~R~i~~~~~~~~~g~W~~-~~~~g~~l~gktiGIIGlG~IG~ 210 (600)
+||||+++|+++||.|+|+||+++.+||||++++||+++|+++++++.+++|.|.+ ....+.++.|+||||||+|.||+
T Consensus 80 ~d~id~~~~~~~gI~v~n~p~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~l~g~~vgIiG~G~IG~ 159 (331)
T 1xdw_A 80 TDHIDKEYAKELGFPMAFVPRYSPNAIAELAVTQAMMLLRHTAYTTSRTAKKNFKVDAFMFSKEVRNCTVGVVGLGRIGR 159 (331)
T ss_dssp CTTBCHHHHHHTTCCEECCCCCCHHHHHHHHHHHHHHHHTTHHHHHHHHTTTCCCCCSTTCCCCGGGSEEEEECCSHHHH
T ss_pred ccccCHHHHHhCCcEEEeCCCCCcHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCccccCcCccCCCCCEEEEECcCHHHH
Confidence 99999999999999999999999999999999999999999999999999999964 34568899999999999999999
Q ss_pred HHHHHhhcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEecCCCccccccccHhHhccCCCceEEEEccCCc
Q 007512 211 EVARRAKGLGMHVIAHDPYAPADRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGG 290 (600)
Q Consensus 211 ~vA~~l~~~g~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Pl~~~t~~li~~~~l~~mk~gailvNvarg~ 290 (600)
.+|+++++|||+|++||++.... +. .++...++++++++||+|++|+|++++|+++++++.|+.||+|++|||+|||+
T Consensus 160 ~~A~~l~~~G~~V~~~d~~~~~~-~~-~~~~~~~l~ell~~aDvV~~~~p~t~~t~~li~~~~l~~mk~ga~lin~srg~ 237 (331)
T 1xdw_A 160 VAAQIFHGMGATVIGEDVFEIKG-IE-DYCTQVSLDEVLEKSDIITIHAPYIKENGAVVTRDFLKKMKDGAILVNCARGQ 237 (331)
T ss_dssp HHHHHHHHTTCEEEEECSSCCCS-CT-TTCEECCHHHHHHHCSEEEECCCCCTTTCCSBCHHHHHTSCTTEEEEECSCGG
T ss_pred HHHHHHHHCCCEEEEECCCccHH-HH-hccccCCHHHHHhhCCEEEEecCCchHHHHHhCHHHHhhCCCCcEEEECCCcc
Confidence 99999999999999999987433 22 23556689999999999999999999999999999999999999999999999
Q ss_pred cccHHHHHHhHhcCCceEEEEeccCCCCC--CCC-------C----ccccC-CcEEEcCCCCCCcHHHHHHHHHHHHHHH
Q 007512 291 VIDEEALVRALDSGRVAQAALDVFTEEPP--PAD-------S----KLVQH-ERVTVTPHLGASTMEAQEGVAIEIAEAV 356 (600)
Q Consensus 291 ivde~aL~~aL~~g~i~ga~lDv~~~EP~--~~~-------~----~L~~~-~nvilTPH~~~~t~ea~~~~~~~~~~~l 356 (600)
++|+++|+++|++|+|+||+||||+.||+ +.+ + |||++ ||+++|||+|++|.|+++++...+++|+
T Consensus 238 ~vd~~aL~~aL~~g~i~gA~LDV~~~EP~~~~~~~~~~~~~~~~~~~L~~~~~nvilTPHia~~t~~~~~~~~~~~~~nl 317 (331)
T 1xdw_A 238 LVDTEAVIEAVESGKLGGYGCDVLDGEASVFGKDLEGQKLENPLFEKLVDLYPRVLITPHLGSYTDEAVKNMVEVSYQNL 317 (331)
T ss_dssp GBCHHHHHHHHHHTSEEEEEESCCTTGGGTTTCCCTTSCCSSHHHHHHHHTTTTEEECCSCTTCSHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHhCCceEEEEecCCCCCCcccccccccccCccchHHHHhCCCCEEEcCccccChHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999994 222 3 79999 9999999999999999999999999999
Q ss_pred HHHHcCCCCCcccc
Q 007512 357 VGALKGELAATAVN 370 (600)
Q Consensus 357 ~~~l~g~~~~~~vn 370 (600)
.+|++|+.+.+.||
T Consensus 318 ~~~~~g~~~~~~v~ 331 (331)
T 1xdw_A 318 KDLAETGDCPNKIK 331 (331)
T ss_dssp HHHHHHSCCTTBCC
T ss_pred HHHHcCCCCCCCCC
Confidence 99999998888775
|
| >2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-60 Score=507.46 Aligned_cols=310 Identities=24% Similarity=0.367 Sum_probs=282.0
Q ss_pred CCCCCeEEEecCCCHhHHHHhcccC-cEEEccC--CCHhHHhhhcCCceEEEEcCC--CCCCHHHHhccCCCceEEEEcC
Q 007512 55 ISSKPTVLIAEKLGQAGLDLLNEFA-NVDCAYN--LSPEELCTKISLCDALIVRSG--TKVNRDVFESSAGRLKVVGRAG 129 (600)
Q Consensus 55 ~~~~~~ilv~~~l~~~~~~~l~~~~-~v~~~~~--~~~~el~~~i~~~d~li~~~~--~~~~~~~l~~~~~~Lk~I~~~g 129 (600)
...+|+||+.|...+...++|++.+ ++.+... .+.+++.+.+.++|+++++.. +++++++++++ |+||+|++.|
T Consensus 14 ~~~~~~vl~~d~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~l~~~-~~Lk~I~~~~ 92 (364)
T 2j6i_A 14 AADEEKLYGCTENKLGIANWLKDQGHELITTSDKEGGNSVLDQHIPDADIIITTPFHPAYITKERIDKA-KKLKLVVVAG 92 (364)
T ss_dssp HHHCTTCTTBTTTGGGCHHHHHHTTCEEEEESCCSSTTSHHHHHGGGCSEEEECTTSCCCBCHHHHHHC-TTCCEEEESS
T ss_pred cccCceEEEecCccHHHHHHHHhCCCEEEEcCCCCCCHHHHHHHhhCCeEEEecCcCCCCCCHHHHhhC-CCCeEEEECC
Confidence 4568999999998888888887754 6655332 245788899999999998642 46899999997 6999999999
Q ss_pred cccCccChhHHHhC--CceeecCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCcccccc--ccceeccCCEEEEEec
Q 007512 130 VGIDNVDLAAATEF--GCLVVNAPTANTVAAAEHGIALLAAMARNVAQADASVKAGKWQRNK--YVGVSLVGKTLAVLGF 205 (600)
Q Consensus 130 ~G~d~iD~~aa~~~--GI~V~n~p~~~~~~vAE~~l~lll~~~R~i~~~~~~~~~g~W~~~~--~~g~~l~gktiGIIGl 205 (600)
+|+||||+++|+++ ||.|+|+||+|+.+||||++++||+++|+++.+++.+++|.|.+.. ..+.+|+|+||||||+
T Consensus 93 ~G~d~id~~~~~~~~~gI~V~n~pg~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~l~g~tvgIIG~ 172 (364)
T 2j6i_A 93 VGSDHIDLDYINQTGKKISVLEVTGSNVVSVAEHVVMTMLVLVRNFVPAHEQIINHDWEVAAIAKDAYDIEGKTIATIGA 172 (364)
T ss_dssp SCCTTBCHHHHHHHTCCCEEEECTTSSHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHTTCCCSTTCEEEEECC
T ss_pred cccccccHHHHHhcCCCEEEEECCCcCcHHHHHHHHHHHHHHHhChHHHHHHHHhCCCCcCcccCCcccCCCCEEEEECc
Confidence 99999999999999 9999999999999999999999999999999999999999997532 2578999999999999
Q ss_pred ChhHHHHHHHhhcCCCE-EEEECCCC-ChhHHHHcCCccc-CHHHHhccCCEEEEecCCCccccccccHhHhccCCCceE
Q 007512 206 GKVGSEVARRAKGLGMH-VIAHDPYA-PADRARAIGVDLV-SFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVR 282 (600)
Q Consensus 206 G~IG~~vA~~l~~~g~~-V~~~d~~~-~~~~a~~~g~~~~-~l~ell~~aDvV~l~~Pl~~~t~~li~~~~l~~mk~gai 282 (600)
|+||+.+|+++++|||+ |++||++. +.+.+.+.|+..+ ++++++++||+|++|+|++++|+++++++.|+.||+|++
T Consensus 173 G~IG~~vA~~l~~~G~~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~ga~ 252 (364)
T 2j6i_A 173 GRIGYRVLERLVPFNPKELLYYDYQALPKDAEEKVGARRVENIEELVAQADIVTVNAPLHAGTKGLINKELLSKFKKGAW 252 (364)
T ss_dssp SHHHHHHHHHHGGGCCSEEEEECSSCCCHHHHHHTTEEECSSHHHHHHTCSEEEECCCCSTTTTTCBCHHHHTTSCTTEE
T ss_pred CHHHHHHHHHHHhCCCcEEEEECCCccchhHHHhcCcEecCCHHHHHhcCCEEEECCCCChHHHHHhCHHHHhhCCCCCE
Confidence 99999999999999997 99999877 5556667787665 899999999999999999999999999999999999999
Q ss_pred EEEccCCccccHHHHHHhHhcCCceEEEEeccCCCCCCCCCccccC--C---cEEEcCCCCCCcHHHHHHHHHHHHHHHH
Q 007512 283 IINVARGGVIDEEALVRALDSGRVAQAALDVFTEEPPPADSKLVQH--E---RVTVTPHLGASTMEAQEGVAIEIAEAVV 357 (600)
Q Consensus 283 lvNvarg~ivde~aL~~aL~~g~i~ga~lDv~~~EP~~~~~~L~~~--~---nvilTPH~~~~t~ea~~~~~~~~~~~l~ 357 (600)
|||+|||+++|+++|+++|++|+|+||+||||++||++.++|||.+ | |+++|||+|++|.|++.+++..+++|+.
T Consensus 253 lIn~arG~~vd~~aL~~aL~~g~i~gA~LDVf~~EP~~~~~pL~~~~~~~~~nvilTPHia~~t~e~~~~~~~~~~~nl~ 332 (364)
T 2j6i_A 253 LVNTARGAICVAEDVAAALESGQLRGYGGDVWFPQPAPKDHPWRDMRNKYGAGNAMTPHYSGTTLDAQTRYAQGTVNILE 332 (364)
T ss_dssp EEECSCGGGBCHHHHHHHHHHTSEEEEEESCCSSSSCCTTCHHHHCCCTTSCCEEECCSCGGGSHHHHHHHHHHHHHHHH
T ss_pred EEECCCCchhCHHHHHHHHHcCCCcEEEEecCCCCCCCCCChHHhccCCccCcEEECCccCcCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999 9 9999999999999999999999999999
Q ss_pred HHHcCCCC
Q 007512 358 GALKGELA 365 (600)
Q Consensus 358 ~~l~g~~~ 365 (600)
+|++|+.+
T Consensus 333 ~~~~g~~~ 340 (364)
T 2j6i_A 333 SFFTGKFD 340 (364)
T ss_dssp HHHTTCCC
T ss_pred HHHcCCCC
Confidence 99999843
|
| >2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-60 Score=505.07 Aligned_cols=297 Identities=24% Similarity=0.376 Sum_probs=270.8
Q ss_pred HHhcccC-cEEEccC--CCHhHHhhhcCCceEEEEcC--CCCCCHHHHhccCCCceEEEEcCcccCccChhHHHhCCcee
Q 007512 73 DLLNEFA-NVDCAYN--LSPEELCTKISLCDALIVRS--GTKVNRDVFESSAGRLKVVGRAGVGIDNVDLAAATEFGCLV 147 (600)
Q Consensus 73 ~~l~~~~-~v~~~~~--~~~~el~~~i~~~d~li~~~--~~~~~~~~l~~~~~~Lk~I~~~g~G~d~iD~~aa~~~GI~V 147 (600)
+.|++.+ ++.+.+. .+.+++.+.+.++|+++++. .+++++++|+++ |+||+|+++|+|+||||+++|+++||.|
T Consensus 61 ~~l~~~g~~v~~~~~~~~~~~~l~~~l~~ad~li~~~~~~~~i~~~~l~~~-p~Lk~I~~~g~G~d~iD~~aa~~~gI~V 139 (393)
T 2nac_A 61 KYLESNGHTLVVTSDKDGPDSVFERELVDADVVISQPFWPAYLTPERIAKA-KNLKLALTAGIGSDHVDLQSAIDRNVTV 139 (393)
T ss_dssp HHHHHTTCEEEEESCCSSTTSHHHHHHTTCSEEEEBTTBCCCBCHHHHHHC-TTCCEEEESSSCCTTBCHHHHHHTTCEE
T ss_pred HHHHhCCCEEEEecCCCCCHHHHHHhccCCCEEEEcCccCCCCCHHHHhhC-CCCcEEEEcCccccccCHHHHhcCCEEE
Confidence 4666654 5654332 24557888999999999864 457999999997 6999999999999999999999999999
Q ss_pred ecCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCcccccc--ccceeccCCEEEEEecChhHHHHHHHhhcCCCEEEE
Q 007512 148 VNAPTANTVAAAEHGIALLAAMARNVAQADASVKAGKWQRNK--YVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIA 225 (600)
Q Consensus 148 ~n~p~~~~~~vAE~~l~lll~~~R~i~~~~~~~~~g~W~~~~--~~g~~l~gktiGIIGlG~IG~~vA~~l~~~g~~V~~ 225 (600)
+|+|++|+.+||||++++||+++|+++++++.+++|.|+... ..+.+|+|+||||||+|+||+++|+++++|||+|++
T Consensus 140 ~n~~g~~~~~VAE~al~liL~~~R~~~~~~~~~~~g~W~~~~~~~~~~~l~gktvGIIGlG~IG~~vA~~l~a~G~~V~~ 219 (393)
T 2nac_A 140 AEVTYCNSISVAEHVVMMILSLVRNYLPSHEWARKGGWNIADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAPFDVHLHY 219 (393)
T ss_dssp EECTTTTHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHTTCCCCTTCEEEEECCSHHHHHHHHHHGGGTCEEEE
T ss_pred EeCCCcccHHHHHHHHHHHHHHHhccHHHHHHHHcCCCCccccccCCccCCCCEEEEEeECHHHHHHHHHHHhCCCEEEE
Confidence 999999999999999999999999999999999999997532 246899999999999999999999999999999999
Q ss_pred ECCCC-ChhHHHHcCCcc-cCHHHHhccCCEEEEecCCCccccccccHhHhccCCCceEEEEccCCccccHHHHHHhHhc
Q 007512 226 HDPYA-PADRARAIGVDL-VSFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVIDEEALVRALDS 303 (600)
Q Consensus 226 ~d~~~-~~~~a~~~g~~~-~~l~ell~~aDvV~l~~Pl~~~t~~li~~~~l~~mk~gailvNvarg~ivde~aL~~aL~~ 303 (600)
||++. ..+.+.+.|+.. .++++++++||+|++|+|++++|+++++++.|+.||+|++|||++||+++|+++|+++|++
T Consensus 220 ~d~~~~~~~~~~~~G~~~~~~l~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~ 299 (393)
T 2nac_A 220 TDRHRLPESVEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTARGKLCDRDAVARALES 299 (393)
T ss_dssp ECSSCCCHHHHHHHTCEECSSHHHHGGGCSEEEECSCCCTTTTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHT
T ss_pred EcCCccchhhHhhcCceecCCHHHHHhcCCEEEEecCCchHHHHHhhHHHHhhCCCCCEEEECCCchHhhHHHHHHHHHc
Confidence 99986 455666778875 4899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceEEEEeccCCCCCCCCCccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCcccc
Q 007512 304 GRVAQAALDVFTEEPPPADSKLVQHERVTVTPHLGASTMEAQEGVAIEIAEAVVGALKGELAATAVN 370 (600)
Q Consensus 304 g~i~ga~lDv~~~EP~~~~~~L~~~~nvilTPH~~~~t~ea~~~~~~~~~~~l~~~l~g~~~~~~vn 370 (600)
|+|+||++|||+.||++.++|||++||+++|||+|+.|.|+++++...+++|+.+|++|++..+.++
T Consensus 300 g~i~gA~lDV~~~EP~~~~~pL~~~~nvilTPHia~~T~e~~~~~~~~~~~nl~~~~~G~~~~~~~~ 366 (393)
T 2nac_A 300 GRLAGYAGDVWFPQPAPKDHPWRTMPYNGMTPHISGTTLTAQARYAAGTREILECFFEGRPIRDEYL 366 (393)
T ss_dssp TSEEEEEESCCSSSSCCTTCGGGTSTTBCCCCSCTTCSHHHHHHHHHHHHHHHHHHHHTCCCCGGGE
T ss_pred CCeeEEEEEecCCCCCCCCChhHcCCCEEECCCCCcCcHHHHHHHHHHHHHHHHHHHcCCCCcceeE
Confidence 9999999999999999899999999999999999999999999999999999999999998887665
|
| >2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-59 Score=495.51 Aligned_cols=320 Identities=26% Similarity=0.374 Sum_probs=289.2
Q ss_pred CCCeEEEecC-C--CHhHHHHhcccCcEEEccCCCHhHHhhhcC-----CceEEEEcC------CCCCCHHHHhccCCCc
Q 007512 57 SKPTVLIAEK-L--GQAGLDLLNEFANVDCAYNLSPEELCTKIS-----LCDALIVRS------GTKVNRDVFESSAGRL 122 (600)
Q Consensus 57 ~~~~ilv~~~-l--~~~~~~~l~~~~~v~~~~~~~~~el~~~i~-----~~d~li~~~------~~~~~~~~l~~~~~~L 122 (600)
.|||||++++ + .+..++.|++.+++.+....+++++.+.+. ++|++++++ .+++++++|++++++|
T Consensus 2 ~~~~vl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~L 81 (348)
T 2w2k_A 2 PRPRVLLLGDPARHLDDLWSDFQQKFEVIPANLTTHDGFKQALREKRYGDFEAIIKLAVENGTESYPWNADLISHLPSSL 81 (348)
T ss_dssp CCCEEEECSSCCSSCHHHHHHHHHHSEEEECCCCCHHHHHHHHHTTTTCCCSEEEECSTTTTGGGCCBCHHHHTTSCTTC
T ss_pred CCcEEEEECCccccChHHHHHHHhcceEEecCCCCHHHHHHHhhhcccCCeEEEEEcccccccccCCCCHHHHHhcccCc
Confidence 4789999998 5 367788887767776655567889988887 899988752 3579999999884369
Q ss_pred eEEEEcCcccCccChhHHHhCCceeecCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCc---ccccc----ccceec
Q 007512 123 KVVGRAGVGIDNVDLAAATEFGCLVVNAPTANTVAAAEHGIALLAAMARNVAQADASVKAGK---WQRNK----YVGVSL 195 (600)
Q Consensus 123 k~I~~~g~G~d~iD~~aa~~~GI~V~n~p~~~~~~vAE~~l~lll~~~R~i~~~~~~~~~g~---W~~~~----~~g~~l 195 (600)
|+|+++|+|+||||+++|+++||.|+|+||+|+.+||||++++||+++|+++++++.+++|. |.+.. ..|.++
T Consensus 82 k~I~~~~~G~d~id~~~~~~~gI~v~n~p~~~~~~vAe~~~~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~~~~~~~~l 161 (348)
T 2w2k_A 82 KVFAAAGAGFDWLDLDALNERGVAFANSRGAGDTATSDLALYLILSVFRLASYSERAARTGDPETFNRVHLEIGKSAHNP 161 (348)
T ss_dssp CEEEESSSCCTTBCHHHHHHTTCEEECCTTTTHHHHHHHHHHHHHHHHHTHHHHHHHHTTCCHHHHHHHHHHHHTTCCCS
T ss_pred eEEEECCccccccCHHHHHhCCcEEEECCCCCcHHHHHHHHHHHHHHHhChHHHHHHHHcCCCcccccccccccccCcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999 95321 357899
Q ss_pred cCCEEEEEecChhHHHHHHHhh-cCCCEEEEECCCC-ChhHHHHcCCccc-CHHHHhccCCEEEEecCCCccccccccHh
Q 007512 196 VGKTLAVLGFGKVGSEVARRAK-GLGMHVIAHDPYA-PADRARAIGVDLV-SFDEAIATADFISLHMPLTPATSKVLNDE 272 (600)
Q Consensus 196 ~gktiGIIGlG~IG~~vA~~l~-~~g~~V~~~d~~~-~~~~a~~~g~~~~-~l~ell~~aDvV~l~~Pl~~~t~~li~~~ 272 (600)
+|+||||||+|.||+.+|++++ +|||+|++||++. ..+.+.+.|+..+ ++++++++||+|++|+|++++|+++++++
T Consensus 162 ~g~~vgIIG~G~IG~~vA~~l~~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVil~vp~~~~t~~li~~~ 241 (348)
T 2w2k_A 162 RGHVLGAVGLGAIQKEIARKAVHGLGMKLVYYDVAPADAETEKALGAERVDSLEELARRSDCVSVSVPYMKLTHHLIDEA 241 (348)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSCCCHHHHHHHTCEECSSHHHHHHHCSEEEECCCCSGGGTTCBCHH
T ss_pred CCCEEEEEEECHHHHHHHHHHHHhcCCEEEEECCCCcchhhHhhcCcEEeCCHHHHhccCCEEEEeCCCChHHHHHhhHH
Confidence 9999999999999999999999 9999999999987 4455566688776 89999999999999999999999999999
Q ss_pred HhccCCCceEEEEccCCccccHHHHHHhHhcCCceEEEEeccCCCCCCCCCccccCCcEEEcCCCCCCcHHHHHHHHHHH
Q 007512 273 TFGKMKKGVRIINVARGGVIDEEALVRALDSGRVAQAALDVFTEEPPPADSKLVQHERVTVTPHLGASTMEAQEGVAIEI 352 (600)
Q Consensus 273 ~l~~mk~gailvNvarg~ivde~aL~~aL~~g~i~ga~lDv~~~EP~~~~~~L~~~~nvilTPH~~~~t~ea~~~~~~~~ 352 (600)
.++.||+|++|||++||+++|+++|.++|++|+|+||++|||+.|| +.++|||+++||++|||+|+.|.|++.++...+
T Consensus 242 ~l~~mk~gailin~srg~~vd~~aL~~aL~~~~i~gaglDv~~~EP-~~~~~L~~~~nviltPH~~~~t~e~~~~~~~~~ 320 (348)
T 2w2k_A 242 FFAAMKPGSRIVNTARGPVISQDALIAALKSGKLLSAGLDVHEFEP-QVSKELIEMKHVTLTTHIGGVAIETFHEFERLT 320 (348)
T ss_dssp HHHHSCTTEEEEECSCGGGBCHHHHHHHHHTTSEEEEEESSCTTTT-SCCHHHHTSSSEEECCSCTTCSHHHHHHHHHHH
T ss_pred HHhcCCCCCEEEECCCCchhCHHHHHHHHHhCCceEEEeccCCCCC-CCCchhhcCCCEEEcCcCCCCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998 567899999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCCccccCCCCChh
Q 007512 353 AEAVVGALKGELAATAVNAPMVPAE 377 (600)
Q Consensus 353 ~~~l~~~l~g~~~~~~vn~~~i~~~ 377 (600)
++|+.+|++|+.+.+.||.+.++++
T Consensus 321 ~~ni~~~~~g~~~~~~v~~~~~~~~ 345 (348)
T 2w2k_A 321 MTNIDRFLLQGKPLLTPAGKVFAPS 345 (348)
T ss_dssp HHHHHHHHHTCCCCSSBCSCCCCCC
T ss_pred HHHHHHHHcCCCCcceecccccCcc
Confidence 9999999999999999998876543
|
| >3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-59 Score=491.21 Aligned_cols=310 Identities=26% Similarity=0.386 Sum_probs=281.6
Q ss_pred CCCCCeEEEecCCCHhHHHHhcccCcEEEcc-CCCHhH-HhhhcCCceEEEEcCCCCCCHHHHhccCCCceEEEEcCccc
Q 007512 55 ISSKPTVLIAEKLGQAGLDLLNEFANVDCAY-NLSPEE-LCTKISLCDALIVRSGTKVNRDVFESSAGRLKVVGRAGVGI 132 (600)
Q Consensus 55 ~~~~~~ilv~~~l~~~~~~~l~~~~~v~~~~-~~~~~e-l~~~i~~~d~li~~~~~~~~~~~l~~~~~~Lk~I~~~g~G~ 132 (600)
.|+||+|++++++.+..++.|++..++.... ..+.++ +.+.++++|++++++.+++++++++++ |+||+|+++|+|+
T Consensus 20 ~m~~~~vl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~-p~Lk~I~~~~~G~ 98 (333)
T 3ba1_A 20 HMEAIGVLMMCPMSTYLEQELDKRFKLFRYWTQPAQRDFLALQAESIRAVVGNSNAGADAELIDAL-PKLEIVSSFSVGL 98 (333)
T ss_dssp --CCCEEEECSCCCHHHHHHHHHHSEEEEGGGCSSHHHHHHHHTTTEEEEEECSSSCBCHHHHHHC-TTCCEEEESSSCC
T ss_pred cCCCCEEEEeCCCCHHHHHHHHhcCCEEEecCCCChHHHHHHHhCCCEEEEEcCCCCCCHHHHhhC-CCCcEEEEcCccc
Confidence 4567999999999999999998766766533 234444 666789999999987788999999997 6999999999999
Q ss_pred CccChhHHHhCCceeecCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCcccccc-ccceeccCCEEEEEecChhHHH
Q 007512 133 DNVDLAAATEFGCLVVNAPTANTVAAAEHGIALLAAMARNVAQADASVKAGKWQRNK-YVGVSLVGKTLAVLGFGKVGSE 211 (600)
Q Consensus 133 d~iD~~aa~~~GI~V~n~p~~~~~~vAE~~l~lll~~~R~i~~~~~~~~~g~W~~~~-~~g~~l~gktiGIIGlG~IG~~ 211 (600)
||||+++|+++||.|+|+||+|+.+||||++++||+++|+++++++.+++|.|.+.. ..|.+++|++|||||+|.||+.
T Consensus 99 d~id~~~~~~~gI~v~n~pg~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~l~g~~vgIIG~G~iG~~ 178 (333)
T 3ba1_A 99 DKVDLIKCEEKGVRVTNTPDVLTDDVADLAIGLILAVLRRICECDKYVRRGAWKFGDFKLTTKFSGKRVGIIGLGRIGLA 178 (333)
T ss_dssp TTBCHHHHHHHTCEEECCCSTTHHHHHHHHHHHHHHHHTTHHHHHHHHHTTGGGGCCCCCCCCCTTCCEEEECCSHHHHH
T ss_pred cccCHHHHHhCCcEEEECCCcchHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCccccccccccCCCEEEEECCCHHHHH
Confidence 999999999999999999999999999999999999999999999999999997533 3578999999999999999999
Q ss_pred HHHHhhcCCCEEEEECCCCChhHHHHcCCc-ccCHHHHhccCCEEEEecCCCccccccccHhHhccCCCceEEEEccCCc
Q 007512 212 VARRAKGLGMHVIAHDPYAPADRARAIGVD-LVSFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGG 290 (600)
Q Consensus 212 vA~~l~~~g~~V~~~d~~~~~~~a~~~g~~-~~~l~ell~~aDvV~l~~Pl~~~t~~li~~~~l~~mk~gailvNvarg~ 290 (600)
+|+++++|||+|++||++.... .|+. ..++++++++||+|++|+|++++|+++++++.++.||+|++|||++||.
T Consensus 179 vA~~l~~~G~~V~~~dr~~~~~----~g~~~~~~l~ell~~aDvVil~vP~~~~t~~li~~~~l~~mk~gailIn~srG~ 254 (333)
T 3ba1_A 179 VAERAEAFDCPISYFSRSKKPN----TNYTYYGSVVELASNSDILVVACPLTPETTHIINREVIDALGPKGVLINIGRGP 254 (333)
T ss_dssp HHHHHHTTTCCEEEECSSCCTT----CCSEEESCHHHHHHTCSEEEECSCCCGGGTTCBCHHHHHHHCTTCEEEECSCGG
T ss_pred HHHHHHHCCCEEEEECCCchhc----cCceecCCHHHHHhcCCEEEEecCCChHHHHHhhHHHHhcCCCCCEEEECCCCc
Confidence 9999999999999999986432 2554 4589999999999999999999999999999999999999999999999
Q ss_pred cccHHHHHHhHhcCCceEEEEeccCCCCCCCCCccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCcccc
Q 007512 291 VIDEEALVRALDSGRVAQAALDVFTEEPPPADSKLVQHERVTVTPHLGASTMEAQEGVAIEIAEAVVGALKGELAATAVN 370 (600)
Q Consensus 291 ivde~aL~~aL~~g~i~ga~lDv~~~EP~~~~~~L~~~~nvilTPH~~~~t~ea~~~~~~~~~~~l~~~l~g~~~~~~vn 370 (600)
++|+++|.++|++|+++||++|||+.||++. +|||+++|+++|||+|+.|.|+++++...+++|+.+|++|+++.+.||
T Consensus 255 ~vd~~aL~~aL~~g~i~ga~lDv~~~EP~~~-~~L~~~~nviltPH~~~~t~e~~~~~~~~~~~nl~~~~~g~~~~~~Vn 333 (333)
T 3ba1_A 255 HVDEPELVSALVEGRLGGAGLDVFEREPEVP-EKLFGLENVVLLPHVGSGTVETRKVMADLVVGNLEAHFSGKPLLTPVV 333 (333)
T ss_dssp GBCHHHHHHHHHHTSSCEEEESCCTTTTCCC-GGGGGCTTEEECSSCTTCSHHHHHHHHHHHHHHHHHHHHTCCCSSBCC
T ss_pred hhCHHHHHHHHHcCCCeEEEEecCCCCCCCc-chhhcCCCEEECCcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCCCCC
Confidence 9999999999999999999999999999865 999999999999999999999999999999999999999998888775
|
| >2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-59 Score=493.07 Aligned_cols=312 Identities=31% Similarity=0.523 Sum_probs=289.1
Q ss_pred CCeEEEecCCCHhHHHHhcccCcEEEccCCCHhHHhhhcCCceEEEEcCCCCCCHHHHhccCCCceEEEEcCcccCccCh
Q 007512 58 KPTVLIAEKLGQAGLDLLNEFANVDCAYNLSPEELCTKISLCDALIVRSGTKVNRDVFESSAGRLKVVGRAGVGIDNVDL 137 (600)
Q Consensus 58 ~~~ilv~~~l~~~~~~~l~~~~~v~~~~~~~~~el~~~i~~~d~li~~~~~~~~~~~l~~~~~~Lk~I~~~g~G~d~iD~ 137 (600)
||||++++.+.++.++.|++..++.+....+.+++.+.+.++|++++++.+++++++++++ |+||+|++.|+|+||||+
T Consensus 2 ~~~il~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~-~~Lk~I~~~~~G~d~id~ 80 (333)
T 2d0i_A 2 RPKVGVLLKMKREALEELKKYADVEIILYPSGEELKGVIGRFDGIIVSPTTKITREVLENA-ERLKVISCHSAGYDNIDL 80 (333)
T ss_dssp CSEEEECSCCCHHHHHHHHTTSEEEECCSCCHHHHHHHGGGCSEEEECTTSCBCHHHHTTC-TTCCEEEESSSCCTTBCH
T ss_pred CcEEEEECCCCHHHHHHHHhcCCEEEeCCCCHHHHHHHhcCCEEEEECCCCCCCHHHHhhC-CCceEEEECCcccccccH
Confidence 6899999999999999998766766543357888999999999999888788999999987 699999999999999999
Q ss_pred hHHHhCCceeecCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCccccc--cccc----eeccCCEEEEEecChhHHH
Q 007512 138 AAATEFGCLVVNAPTANTVAAAEHGIALLAAMARNVAQADASVKAGKWQRN--KYVG----VSLVGKTLAVLGFGKVGSE 211 (600)
Q Consensus 138 ~aa~~~GI~V~n~p~~~~~~vAE~~l~lll~~~R~i~~~~~~~~~g~W~~~--~~~g----~~l~gktiGIIGlG~IG~~ 211 (600)
++|+++||.|+|+||+++.+||||++++||+++|+++++++.+++|.|.+. .+.| .+|.|++|||||+|.||+.
T Consensus 81 ~~~~~~gi~v~n~~~~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~~l~g~~vgIIG~G~iG~~ 160 (333)
T 2d0i_A 81 EEATKRGIYVTKVSGLLSEAVAEFTVGLIINLMRKIHYADKFIRRGEWESHAKIWTGFKRIESLYGKKVGILGMGAIGKA 160 (333)
T ss_dssp HHHHHTTCEEECCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCCCHHHHHTTSCCCCCSTTCEEEEECCSHHHHH
T ss_pred HHHHhCCcEEEeCCCcChHHHHHHHHHHHHHHHhHHHHHHHHHHcCCCCcCcccccCCcccCCCCcCEEEEEccCHHHHH
Confidence 999999999999999999999999999999999999999999999999642 2346 7999999999999999999
Q ss_pred HHHHhhcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEecCCCccccccccHhHhccCCCceEEEEccCCcc
Q 007512 212 VARRAKGLGMHVIAHDPYAPADRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGV 291 (600)
Q Consensus 212 vA~~l~~~g~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Pl~~~t~~li~~~~l~~mk~gailvNvarg~i 291 (600)
+|++++++||+|++||++...+.+.+.|+...++++++++||+|++|+|.+++|+++++++.++.||+| +|||++||.+
T Consensus 161 vA~~l~~~G~~V~~~d~~~~~~~~~~~g~~~~~l~e~l~~aDiVil~vp~~~~t~~~i~~~~~~~mk~g-ilin~srg~~ 239 (333)
T 2d0i_A 161 IARRLIPFGVKLYYWSRHRKVNVEKELKARYMDIDELLEKSDIVILALPLTRDTYHIINEERVKKLEGK-YLVNIGRGAL 239 (333)
T ss_dssp HHHHHGGGTCEEEEECSSCCHHHHHHHTEEECCHHHHHHHCSEEEECCCCCTTTTTSBCHHHHHHTBTC-EEEECSCGGG
T ss_pred HHHHHHHCCCEEEEECCCcchhhhhhcCceecCHHHHHhhCCEEEEcCCCChHHHHHhCHHHHhhCCCC-EEEECCCCcc
Confidence 999999999999999998866556667777779999999999999999999999999999889999999 9999999999
Q ss_pred ccHHHHHHhHhcCCceEEEEeccCCCCCCCCCccccCC-cEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCcccc
Q 007512 292 IDEEALVRALDSGRVAQAALDVFTEEPPPADSKLVQHE-RVTVTPHLGASTMEAQEGVAIEIAEAVVGALKGELAATAVN 370 (600)
Q Consensus 292 vde~aL~~aL~~g~i~ga~lDv~~~EP~~~~~~L~~~~-nvilTPH~~~~t~ea~~~~~~~~~~~l~~~l~g~~~~~~vn 370 (600)
+|+++|.++|++++++|||+|||+.||++ ++|||+++ ||++|||+++.|.|+++++...+++|+.+|++|+.+.+.||
T Consensus 240 vd~~aL~~aL~~~~i~gaglDv~~~EP~~-~~~L~~~~~nviltPh~~~~t~~~~~~~~~~~~~n~~~~~~g~~~~~~v~ 318 (333)
T 2d0i_A 240 VDEKAVTEAIKQGKLKGYATDVFEKEPVR-EHELFKYEWETVLTPHYAGLALEAQEDVGFRAVENLLKVLRGEVPEDLVN 318 (333)
T ss_dssp BCHHHHHHHHHTTCBCEEEESCCSSSSCS-CCGGGGCTTTEEECCSCTTCCHHHHHHHHHHHHHHHHHHHTTCCCTTBSC
T ss_pred cCHHHHHHHHHcCCceEEEecCCCCCCCC-CchHHcCCCCEEEcCccCCCcHHHHHHHHHHHHHHHHHHHcCCCCcCccC
Confidence 99999999999999999999999999987 89999999 99999999999999999999999999999999999999888
Q ss_pred CC
Q 007512 371 AP 372 (600)
Q Consensus 371 ~~ 372 (600)
+.
T Consensus 319 ~~ 320 (333)
T 2d0i_A 319 KE 320 (333)
T ss_dssp TT
T ss_pred HH
Confidence 54
|
| >1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-58 Score=489.44 Aligned_cols=311 Identities=28% Similarity=0.464 Sum_probs=277.2
Q ss_pred CCCCCeEEEecCCC-HhHHHHhcccCcEEEccCCCHhHHhhhc-CCceEEEEcCCCCCCHHHHhccCCCceEEEEcCccc
Q 007512 55 ISSKPTVLIAEKLG-QAGLDLLNEFANVDCAYNLSPEELCTKI-SLCDALIVRSGTKVNRDVFESSAGRLKVVGRAGVGI 132 (600)
Q Consensus 55 ~~~~~~ilv~~~l~-~~~~~~l~~~~~v~~~~~~~~~el~~~i-~~~d~li~~~~~~~~~~~l~~~~~~Lk~I~~~g~G~ 132 (600)
.+.||+|++.+... +..++.++...++......+.+|+.+.+ .++|+++++..+++++++++++ |+||+|+++|+|+
T Consensus 18 ~~~kp~i~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~Lk~I~~~~~G~ 96 (347)
T 1mx3_A 18 GSHMPLVALLDGRDCTVEMPILKDVATVAFCDAQSTQEIHEKVLNEAVGALMYHTITLTREDLEKF-KALRIIVRIGSGF 96 (347)
T ss_dssp ---CCEEEESSCSCCTTTHHHHTTTCEEEECCCSSGGGSCHHHHHHEEEEEECSSSCBCHHHHTTC-SSCCEEEESSSCC
T ss_pred CCCCCEEEEEcCCcchhhHHHhhccceEEecCCCCHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhC-CCCCEEEEccccc
Confidence 45699999987532 2236677776677766556677777764 7899988887778999999997 6999999999999
Q ss_pred CccChhHHHhCCceeecCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCcccccc------ccc-eeccCCEEEEEec
Q 007512 133 DNVDLAAATEFGCLVVNAPTANTVAAAEHGIALLAAMARNVAQADASVKAGKWQRNK------YVG-VSLVGKTLAVLGF 205 (600)
Q Consensus 133 d~iD~~aa~~~GI~V~n~p~~~~~~vAE~~l~lll~~~R~i~~~~~~~~~g~W~~~~------~~g-~~l~gktiGIIGl 205 (600)
||||+++|+++||.|+|+||+++.+||||++++||+++|+++.+++.+++|.|.... ..| .+++|+||||||+
T Consensus 97 d~id~~~~~~~gI~V~n~~~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~~~l~g~tvGIIG~ 176 (347)
T 1mx3_A 97 DNIDIKSAGDLGIAVCNVPAASVEETADSTLCHILNLYRRATWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGL 176 (347)
T ss_dssp TTBCHHHHHHTTCEEECCCSTTHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCCCSHHHHHHHTTTCCCCTTCEEEEECC
T ss_pred CcccHHHHHhCCceEEECCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCcccccccccccccCccCCCCCEEEEEeE
Confidence 999999999999999999999999999999999999999999999999999996421 113 6999999999999
Q ss_pred ChhHHHHHHHhhcCCCEEEEECCCCChhHHHHcCCccc-CHHHHhccCCEEEEecCCCccccccccHhHhccCCCceEEE
Q 007512 206 GKVGSEVARRAKGLGMHVIAHDPYAPADRARAIGVDLV-SFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRII 284 (600)
Q Consensus 206 G~IG~~vA~~l~~~g~~V~~~d~~~~~~~a~~~g~~~~-~l~ell~~aDvV~l~~Pl~~~t~~li~~~~l~~mk~gailv 284 (600)
|.||+.+|+++++|||+|++||++.....+...|+..+ ++++++++||+|++|+|++++|+++++++.|+.||+|++||
T Consensus 177 G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailI 256 (347)
T 1mx3_A 177 GRVGQAVALRAKAFGFNVLFYDPYLSDGVERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLV 256 (347)
T ss_dssp SHHHHHHHHHHHTTTCEEEEECTTSCTTHHHHHTCEECSSHHHHHHHCSEEEECCCCCTTCTTSBSHHHHTTSCTTEEEE
T ss_pred CHHHHHHHHHHHHCCCEEEEECCCcchhhHhhcCCeecCCHHHHHhcCCEEEEcCCCCHHHHHHhHHHHHhcCCCCCEEE
Confidence 99999999999999999999999875555566787654 89999999999999999999999999999999999999999
Q ss_pred EccCCccccHHHHHHhHhcCCceEEEEeccCCCCCC-CCCccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCC
Q 007512 285 NVARGGVIDEEALVRALDSGRVAQAALDVFTEEPPP-ADSKLVQHERVTVTPHLGASTMEAQEGVAIEIAEAVVGALKGE 363 (600)
Q Consensus 285 Nvarg~ivde~aL~~aL~~g~i~ga~lDv~~~EP~~-~~~~L~~~~nvilTPH~~~~t~ea~~~~~~~~~~~l~~~l~g~ 363 (600)
|++||+++|+++|+++|++|+|+||++|||+.||++ .++||+.++|+++|||+++.|.++++++...+++|+.+|++|+
T Consensus 257 N~arg~~vd~~aL~~aL~~g~i~gA~lDV~~~EP~~~~~~~L~~~~nvi~tPHia~~t~~~~~~~~~~~~~ni~~~~~g~ 336 (347)
T 1mx3_A 257 NTARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFSQGPLKDAPNLICTPHAAWYSEQASIEMREEAAREIRRAITGR 336 (347)
T ss_dssp ECSCTTSBCHHHHHHHHHHTSEEEEEESCCSSSSCCTTSSTTTTCSSEEECSSCTTCCHHHHHHHHHHHHHHHHHHHHSC
T ss_pred ECCCChHHhHHHHHHHHHhCCCcEEEEeecccCCCCCCCchHHhCCCEEEEchHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 999999999999999999999999999999999986 4689999999999999999999999999999999999999998
Q ss_pred CCC
Q 007512 364 LAA 366 (600)
Q Consensus 364 ~~~ 366 (600)
.+.
T Consensus 337 ~~~ 339 (347)
T 1mx3_A 337 IPD 339 (347)
T ss_dssp TTT
T ss_pred CCc
Confidence 765
|
| >2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-58 Score=484.59 Aligned_cols=312 Identities=34% Similarity=0.611 Sum_probs=288.3
Q ss_pred CCeEEEecCCCHhHHHHhcccCcEEEccC---CCHhHHhhhcCCceEEEEcCCCCCCHHHHhccCCCceEEEEcCcccCc
Q 007512 58 KPTVLIAEKLGQAGLDLLNEFANVDCAYN---LSPEELCTKISLCDALIVRSGTKVNRDVFESSAGRLKVVGRAGVGIDN 134 (600)
Q Consensus 58 ~~~ilv~~~l~~~~~~~l~~~~~v~~~~~---~~~~el~~~i~~~d~li~~~~~~~~~~~l~~~~~~Lk~I~~~g~G~d~ 134 (600)
|+||++++.+.+...+.|++..++.+... .+.+++.+.+.++|++++++.+++++++++++ |+||||++.|+|+||
T Consensus 2 ~~~il~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~~-~~Lk~I~~~~~G~d~ 80 (334)
T 2dbq_A 2 KPKVFITREIPEVGIKMLEDEFEVEVWGDEKEIPREILLKKVKEVDALVTMLSERIDKEVFENA-PKLRIVANYAVGYDN 80 (334)
T ss_dssp CCEEEESSCCCHHHHHHHHTTSEEEECCCSSCCCHHHHHHHTTSCSEEEECTTSCBCHHHHHTC-TTCCEEEESSSCCTT
T ss_pred CcEEEEecCCCHHHHHHHHhcCCEEEecCCCCCCHHHHHHHhcCcEEEEEcCCCCCCHHHHhhC-CCceEEEECCccccc
Confidence 57899999999988898887667765432 46788999999999999987778999999987 699999999999999
Q ss_pred cChhHHHhCCceeecCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCccc----c---ccccceeccCCEEEEEecCh
Q 007512 135 VDLAAATEFGCLVVNAPTANTVAAAEHGIALLAAMARNVAQADASVKAGKWQ----R---NKYVGVSLVGKTLAVLGFGK 207 (600)
Q Consensus 135 iD~~aa~~~GI~V~n~p~~~~~~vAE~~l~lll~~~R~i~~~~~~~~~g~W~----~---~~~~g~~l~gktiGIIGlG~ 207 (600)
||+++|+++||.|+|+||+|+.+||||++++||+++|+++++++.+++|.|. + ..+.|.++.|++|||||+|.
T Consensus 81 id~~~~~~~gi~v~n~~~~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~l~g~~vgIIG~G~ 160 (334)
T 2dbq_A 81 IDIEEATKRGIYVTNTPDVLTDATADLAFALLLATARHVVKGDRFVRSGEWKKRGVAWHPKWFLGYDVYGKTIGIIGLGR 160 (334)
T ss_dssp BCHHHHHHTTCEEECCCSTTHHHHHHHHHHHHHHHHHTHHHHHHHHHTSHHHHTTCCCCTTTTCCCCCTTCEEEEECCSH
T ss_pred ccHHHHHhCCCEEEeCCCcCHHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCcccccccccccccccCCCCCEEEEEccCH
Confidence 9999999999999999999999999999999999999999999999999996 2 12347899999999999999
Q ss_pred hHHHHHHHhhcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEecCCCccccccccHhHhccCCCceEEEEcc
Q 007512 208 VGSEVARRAKGLGMHVIAHDPYAPADRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVA 287 (600)
Q Consensus 208 IG~~vA~~l~~~g~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Pl~~~t~~li~~~~l~~mk~gailvNva 287 (600)
||+.+|++++++||+|++||++...+.+.+.|+...++++++++||+|++|+|.+++|+++++++.+..||+|++|||++
T Consensus 161 iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~g~~~~~l~~~l~~aDvVil~vp~~~~t~~~i~~~~~~~mk~~ailIn~s 240 (334)
T 2dbq_A 161 IGQAIAKRAKGFNMRILYYSRTRKEEVERELNAEFKPLEDLLRESDFVVLAVPLTRETYHLINEERLKLMKKTAILINIA 240 (334)
T ss_dssp HHHHHHHHHHHTTCEEEEECSSCCHHHHHHHCCEECCHHHHHHHCSEEEECCCCCTTTTTCBCHHHHHHSCTTCEEEECS
T ss_pred HHHHHHHHHHhCCCEEEEECCCcchhhHhhcCcccCCHHHHHhhCCEEEECCCCChHHHHhhCHHHHhcCCCCcEEEECC
Confidence 99999999999999999999988655555678777799999999999999999999999999999999999999999999
Q ss_pred CCccccHHHHHHhHhcCCceEEEEeccCCCCCCCCCccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCc
Q 007512 288 RGGVIDEEALVRALDSGRVAQAALDVFTEEPPPADSKLVQHERVTVTPHLGASTMEAQEGVAIEIAEAVVGALKGELAAT 367 (600)
Q Consensus 288 rg~ivde~aL~~aL~~g~i~ga~lDv~~~EP~~~~~~L~~~~nvilTPH~~~~t~ea~~~~~~~~~~~l~~~l~g~~~~~ 367 (600)
||.++++++|.++|++|+++||++|||++|| +.++|||.++|+++|||+|+.|.++++++...+++|+.+|++|+.+.+
T Consensus 241 rg~~v~~~aL~~aL~~~~i~ga~lDv~~~EP-~~~~~L~~~~~vi~tPh~~~~t~~~~~~~~~~~~~n~~~~~~g~~~~~ 319 (334)
T 2dbq_A 241 RGKVVDTNALVKALKEGWIAGAGLDVFEEEP-YYNEELFKLDNVVLTPHIGSASFGAREGMAELVAKNLIAFKRGEIPPT 319 (334)
T ss_dssp CGGGBCHHHHHHHHHHTSSSEEEESCCSSSS-CCCHHHHHCTTEEECSSCTTCSHHHHHHHHHHHHHHHHHHHTTCCCTT
T ss_pred CCcccCHHHHHHHHHhCCeeEEEecCCCCCC-CCCchhhcCCCEEECCccCCCcHHHHHHHHHHHHHHHHHHHcCCCCcc
Confidence 9999999999999999999999999999999 678999999999999999999999999999999999999999999988
Q ss_pred cccC
Q 007512 368 AVNA 371 (600)
Q Consensus 368 ~vn~ 371 (600)
.||+
T Consensus 320 ~v~~ 323 (334)
T 2dbq_A 320 LVNR 323 (334)
T ss_dssp BSCT
T ss_pred ccCH
Confidence 8884
|
| >2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.5e-58 Score=480.87 Aligned_cols=316 Identities=27% Similarity=0.444 Sum_probs=288.5
Q ss_pred CCCCCeEEEecCCCHhHHHHhccc--CcEEEcc---CCCHhHHhhhcCCceEEEEcCCCCCCHHHHhccCCCceEEEEcC
Q 007512 55 ISSKPTVLIAEKLGQAGLDLLNEF--ANVDCAY---NLSPEELCTKISLCDALIVRSGTKVNRDVFESSAGRLKVVGRAG 129 (600)
Q Consensus 55 ~~~~~~ilv~~~l~~~~~~~l~~~--~~v~~~~---~~~~~el~~~i~~~d~li~~~~~~~~~~~l~~~~~~Lk~I~~~g 129 (600)
++.|+||++++.+.+...+.|++. .++.+.. ..+++++.+.++++|++++++.++++++++++++|+||||++.|
T Consensus 5 ~~~~~~il~~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~~~~~Lk~I~~~~ 84 (330)
T 2gcg_A 5 PVRLMKVFVTRRIPAEGRVALARAADCEVEQWDSDEPIPAKELERGVAGAHGLLCLLSDHVDKRILDAAGANLKVISTMS 84 (330)
T ss_dssp --CCEEEEESSCCCHHHHHHHHHCTTEEEEECCSSSCCCHHHHHHHHTTCSEEEECTTSCBCHHHHHHHCTTCCEEEESS
T ss_pred CCCCCEEEEECCCCHHHHHHHHhcCCceEEEecCCCCCCHHHHHHHhcCCeEEEECCCCCCCHHHHHhcCCCceEEEECC
Confidence 345679999999998888988876 4555432 34678999999999999998777899999998745999999999
Q ss_pred cccCccChhHHHhCCceeecCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCccccc---cccceeccCCEEEEEecC
Q 007512 130 VGIDNVDLAAATEFGCLVVNAPTANTVAAAEHGIALLAAMARNVAQADASVKAGKWQRN---KYVGVSLVGKTLAVLGFG 206 (600)
Q Consensus 130 ~G~d~iD~~aa~~~GI~V~n~p~~~~~~vAE~~l~lll~~~R~i~~~~~~~~~g~W~~~---~~~g~~l~gktiGIIGlG 206 (600)
+|+||||+++|+++||.|+|+||+++.+||||++++||+++|+++++++.+++|.|.+. .+.|.++.|++|||||+|
T Consensus 85 ~G~d~id~~~~~~~gi~v~n~~~~~~~~vAe~~~~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l~g~~vgIIG~G 164 (330)
T 2gcg_A 85 VGIDHLALDEIKKRGIRVGYTPDVLTDTTAELAVSLLLTTCRRLPEAIEEVKNGGWTSWKPLWLCGYGLTQSTVGIIGLG 164 (330)
T ss_dssp SCCTTBCHHHHHHTTCEEECCCSTTHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCSCCTTSSCBCCCTTCEEEEECCS
T ss_pred cccccccHHHHHhCCceEEeCCCCChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCcccCcccccCcCCCCCEEEEECcC
Confidence 99999999999999999999999999999999999999999999999999999999742 235789999999999999
Q ss_pred hhHHHHHHHhhcCCCEEEEECCCC-ChhHHHHcCCcccCHHHHhccCCEEEEecCCCccccccccHhHhccCCCceEEEE
Q 007512 207 KVGSEVARRAKGLGMHVIAHDPYA-PADRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIIN 285 (600)
Q Consensus 207 ~IG~~vA~~l~~~g~~V~~~d~~~-~~~~a~~~g~~~~~l~ell~~aDvV~l~~Pl~~~t~~li~~~~l~~mk~gailvN 285 (600)
.||+.+|++++++|++|++||++. ..+.+.+.|+...++++++++||+|++|+|.+++|+++++++.++.||+|++|||
T Consensus 165 ~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~l~e~l~~aDvVi~~vp~~~~t~~~i~~~~~~~mk~gailIn 244 (330)
T 2gcg_A 165 RIGQAIARRLKPFGVQRFLYTGRQPRPEEAAEFQAEFVSTPELAAQSDFIVVACSLTPATEGLCNKDFFQKMKETAVFIN 244 (330)
T ss_dssp HHHHHHHHHHGGGTCCEEEEESSSCCHHHHHTTTCEECCHHHHHHHCSEEEECCCCCTTTTTCBSHHHHHHSCTTCEEEE
T ss_pred HHHHHHHHHHHHCCCEEEEECCCCcchhHHHhcCceeCCHHHHHhhCCEEEEeCCCChHHHHhhCHHHHhcCCCCcEEEE
Confidence 999999999999999999999876 4555556677766999999999999999999999999999999999999999999
Q ss_pred ccCCccccHHHHHHhHhcCCceEEEEeccCCCCCCCCCccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCC
Q 007512 286 VARGGVIDEEALVRALDSGRVAQAALDVFTEEPPPADSKLVQHERVTVTPHLGASTMEAQEGVAIEIAEAVVGALKGELA 365 (600)
Q Consensus 286 varg~ivde~aL~~aL~~g~i~ga~lDv~~~EP~~~~~~L~~~~nvilTPH~~~~t~ea~~~~~~~~~~~l~~~l~g~~~ 365 (600)
++||+++|+++|.++|++|+++||++|||+.||++.++|||+++|+++|||+|+.|.|+++++...+++|+.++++|+++
T Consensus 245 ~srg~~v~~~aL~~aL~~~~i~ga~lDv~~~epl~~~~~l~~~~nvi~tPh~~~~t~~~~~~~~~~~~~n~~~~~~g~~~ 324 (330)
T 2gcg_A 245 ISRGDVVNQDDLYQALASGKIAAAGLDVTSPEPLPTNHPLLTLKNCVILPHIGSATHRTRNTMSLLAANNLLAGLRGEPM 324 (330)
T ss_dssp CSCGGGBCHHHHHHHHHHTSSSEEEESCCSSSSCCTTCGGGGCTTEEECCSCTTCBHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred CCCCcccCHHHHHHHHHcCCccEEEeCCCCCCCCCCCChhhcCCCEEECCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999998999999999999999999999999999999999999999999988
Q ss_pred Ccccc
Q 007512 366 ATAVN 370 (600)
Q Consensus 366 ~~~vn 370 (600)
.+.||
T Consensus 325 ~~~v~ 329 (330)
T 2gcg_A 325 PSELK 329 (330)
T ss_dssp TTEEC
T ss_pred CCCCC
Confidence 88876
|
| >3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-58 Score=484.32 Aligned_cols=297 Identities=22% Similarity=0.285 Sum_probs=260.3
Q ss_pred CCCeEEEecCCC--HhHHHHhccc-CcEEEccCCCHhHHhhhcCCceEEEEcCCCCCCHHHHhccCCCceEEEEcCcccC
Q 007512 57 SKPTVLIAEKLG--QAGLDLLNEF-ANVDCAYNLSPEELCTKISLCDALIVRSGTKVNRDVFESSAGRLKVVGRAGVGID 133 (600)
Q Consensus 57 ~~~~ilv~~~l~--~~~~~~l~~~-~~v~~~~~~~~~el~~~i~~~d~li~~~~~~~~~~~l~~~~~~Lk~I~~~g~G~d 133 (600)
+.|||++..+.. ++..+.|++. .++++....+ + ...++|+++++. .+++++++ |+||+|++.|+|+|
T Consensus 2 ~~mkil~~~~~~~~~~~~~~l~~~~p~~~~~~~~~-~----~~~~ad~~i~~~---~~~~~l~~--~~Lk~I~~~~aG~d 71 (315)
T 3pp8_A 2 NAMEIIFYHPTFNAAWWVNALEKALPHARVREWKV-G----DNNPADYALVWQ---PPVEMLAG--RRLKAVFVLGAGVD 71 (315)
T ss_dssp CCEEEEEECSSSCHHHHHHHHHHHSTTEEEEECCT-T----CCSCCSEEEESS---CCHHHHTT--CCCSEEEESSSCCH
T ss_pred CceEEEEEcCCCchHHHHHHHHHHCCCCEEEecCC-C----CccCcEEEEECC---CCHHHhCC--CCceEEEECCEecc
Confidence 458999987754 4456666653 4665533211 1 356999999874 47899987 59999999999999
Q ss_pred cc-C-hhH---HHhCCceeecCCCCC-hHHHHHHHHHHHHHHHhchHHHHHHHHcCccccccccceeccCCEEEEEecCh
Q 007512 134 NV-D-LAA---ATEFGCLVVNAPTAN-TVAAAEHGIALLAAMARNVAQADASVKAGKWQRNKYVGVSLVGKTLAVLGFGK 207 (600)
Q Consensus 134 ~i-D-~~a---a~~~GI~V~n~p~~~-~~~vAE~~l~lll~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktiGIIGlG~ 207 (600)
|| | +++ +.++||.|+|+|+++ +.+||||+++++|+++|+++++++.+++|+|.+. .+.+++||||||||+|.
T Consensus 72 ~i~d~~~a~~~~~~~gi~v~~~~~~~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~--~~~~l~g~tvGIiG~G~ 149 (315)
T 3pp8_A 72 AILSKLNAHPEMLDASIPLFRLEDTGMGLQMQEYAVSQVLHWFRRFDDYQALKNQALWKPL--PEYTREEFSVGIMGAGV 149 (315)
T ss_dssp HHHHHHHHCTTSSCTTSCEEEC--CCCHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCC--CCCCSTTCCEEEECCSH
T ss_pred cccchhhhhhhhhcCCCEEEEcCCCCccHHHHHHHHHHHHHHHhCChHHHHHHHhcccCCC--CCCCcCCCEEEEEeeCH
Confidence 99 7 887 789999999999864 8999999999999999999999999999999864 57899999999999999
Q ss_pred hHHHHHHHhhcCCCEEEEECCCCChhHHHHcCCc----ccCHHHHhccCCEEEEecCCCccccccccHhHhccCCCceEE
Q 007512 208 VGSEVARRAKGLGMHVIAHDPYAPADRARAIGVD----LVSFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRI 283 (600)
Q Consensus 208 IG~~vA~~l~~~g~~V~~~d~~~~~~~a~~~g~~----~~~l~ell~~aDvV~l~~Pl~~~t~~li~~~~l~~mk~gail 283 (600)
||+++|+++++|||+|++||++.... .++. ..++++++++||+|++|+|++++|+++++++.|+.||+|++|
T Consensus 150 IG~~vA~~l~~~G~~V~~~dr~~~~~----~~~~~~~~~~~l~ell~~aDiV~l~~Plt~~t~~li~~~~l~~mk~gail 225 (315)
T 3pp8_A 150 LGAKVAESLQAWGFPLRCWSRSRKSW----PGVESYVGREELRAFLNQTRVLINLLPNTAQTVGIINSELLDQLPDGAYV 225 (315)
T ss_dssp HHHHHHHHHHTTTCCEEEEESSCCCC----TTCEEEESHHHHHHHHHTCSEEEECCCCCGGGTTCBSHHHHTTSCTTEEE
T ss_pred HHHHHHHHHHHCCCEEEEEcCCchhh----hhhhhhcccCCHHHHHhhCCEEEEecCCchhhhhhccHHHHhhCCCCCEE
Confidence 99999999999999999999876321 1222 247999999999999999999999999999999999999999
Q ss_pred EEccCCccccHHHHHHhHhcCCceEEEEeccCCCCCCCCCccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCC
Q 007512 284 INVARGGVIDEEALVRALDSGRVAQAALDVFTEEPPPADSKLVQHERVTVTPHLGASTMEAQEGVAIEIAEAVVGALKGE 363 (600)
Q Consensus 284 vNvarg~ivde~aL~~aL~~g~i~ga~lDv~~~EP~~~~~~L~~~~nvilTPH~~~~t~ea~~~~~~~~~~~l~~~l~g~ 363 (600)
||+|||+++|+++|+++|++|+|+||++|||+.||++.++|||++||+++|||+|++|.+ +++...+++|+.+|++|+
T Consensus 226 IN~aRG~~vd~~aL~~aL~~g~i~gA~lDV~~~EPl~~~~pL~~~~nvilTPHia~~t~~--~~~~~~~~~ni~~~~~G~ 303 (315)
T 3pp8_A 226 LNLARGVHVQEADLLAALDSGKLKGAMLDVFSQEPLPQESPLWRHPRVAMTPHIAAVTRP--AEAIDYISRTITQLEKGE 303 (315)
T ss_dssp EECSCGGGBCHHHHHHHHHHTSEEEEEESCCSSSSCCTTCGGGGCTTEEECSSCSSCCCH--HHHHHHHHHHHHHHHHTC
T ss_pred EECCCChhhhHHHHHHHHHhCCccEEEcCCCCCCCCCCCChhhcCCCEEECCCCCcccHH--HHHHHHHHHHHHHHHcCC
Confidence 999999999999999999999999999999999999999999999999999999999986 568899999999999999
Q ss_pred CCCccccC
Q 007512 364 LAATAVNA 371 (600)
Q Consensus 364 ~~~~~vn~ 371 (600)
++.+.||+
T Consensus 304 ~~~~~V~~ 311 (315)
T 3pp8_A 304 PVTGQVDR 311 (315)
T ss_dssp CCCCBCCC
T ss_pred CCCceECc
Confidence 99999885
|
| >1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-57 Score=470.55 Aligned_cols=295 Identities=19% Similarity=0.251 Sum_probs=265.9
Q ss_pred CeEEEecCCCHhHHHHhcccCcEEEccCCCHhHHhhhcCCceEEEEcCCCCCCHHHHhccCCCceEEEEcCcccCccChh
Q 007512 59 PTVLIAEKLGQAGLDLLNEFANVDCAYNLSPEELCTKISLCDALIVRSGTKVNRDVFESSAGRLKVVGRAGVGIDNVDLA 138 (600)
Q Consensus 59 ~~ilv~~~l~~~~~~~l~~~~~v~~~~~~~~~el~~~i~~~d~li~~~~~~~~~~~l~~~~~~Lk~I~~~g~G~d~iD~~ 138 (600)
||||+++++.++..+.|++.. .++. .+.+.++|+++++. .+.++++++ |+||+|++.|+|+||||++
T Consensus 1 m~il~~~~~~~~~~~~l~~~~-~~v~--------~~~~~~~d~~i~~~---~~~~~l~~~-~~Lk~I~~~~~G~d~id~~ 67 (303)
T 1qp8_A 1 MELYVNFELPPEAEEELRKYF-KIVR--------GGDLGNVEAALVSR---ITAEELAKM-PRLKFIQVVTAGLDHLPWE 67 (303)
T ss_dssp CEEECCSCCCHHHHHHHHTTC-EEEC--------SSCCTTBCCCCBSC---CCHHHHHHC-TTCCCEEBSSSCCTTSCCT
T ss_pred CEEEEccCCCHHHHHHHHhcC-Cccc--------hhhhCCCEEEEECC---CCHHHHhhC-CCCcEEEECCcCcccccHH
Confidence 479999999999898887652 2221 14678999998764 456899987 6999999999999999999
Q ss_pred HHHhCCceeecCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCccccccccceeccCCEEEEEecChhHHHHHHHhhc
Q 007512 139 AATEFGCLVVNAPTANTVAAAEHGIALLAAMARNVAQADASVKAGKWQRNKYVGVSLVGKTLAVLGFGKVGSEVARRAKG 218 (600)
Q Consensus 139 aa~~~GI~V~n~p~~~~~~vAE~~l~lll~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktiGIIGlG~IG~~vA~~l~~ 218 (600)
++ ++||.|+|+||+|+.+||||++++||+++|+++.+++.+++|.|.+. ..+.++.|+||||||+|.||+++|+++++
T Consensus 68 ~~-~~gi~v~~~~~~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~-~~~~~l~g~~vgIIG~G~IG~~~A~~l~~ 145 (303)
T 1qp8_A 68 SI-PPHVTVAGNAGSNADAVAEFALALLLAPYKRIIQYGEKMKRGDYGRD-VEIPLIQGEKVAVLGLGEIGTRVGKILAA 145 (303)
T ss_dssp TS-CTTSCEECCCSSSHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCC-SCCCCCTTCEEEEESCSTHHHHHHHHHHH
T ss_pred HH-hcCCEEEECCCCCchHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCCC-CCCCCCCCCEEEEEccCHHHHHHHHHHHH
Confidence 85 79999999999999999999999999999999999999999999753 23458999999999999999999999999
Q ss_pred CCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEecCCCccccccccHhHhccCCCceEEEEccCCccccHHHHH
Q 007512 219 LGMHVIAHDPYAPADRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVIDEEALV 298 (600)
Q Consensus 219 ~g~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Pl~~~t~~li~~~~l~~mk~gailvNvarg~ivde~aL~ 298 (600)
|||+|++||++.. +. ......++++++++||+|++|+|++++|+++++++.|+.||+|++|||+|||+++|+++|.
T Consensus 146 ~G~~V~~~dr~~~-~~---~~~~~~~l~ell~~aDvV~l~~P~~~~t~~~i~~~~l~~mk~gailin~srg~~vd~~aL~ 221 (303)
T 1qp8_A 146 LGAQVRGFSRTPK-EG---PWRFTNSLEEALREARAAVCALPLNKHTRGLVKYQHLALMAEDAVFVNVGRAEVLDRDGVL 221 (303)
T ss_dssp TTCEEEEECSSCC-CS---SSCCBSCSHHHHTTCSEEEECCCCSTTTTTCBCHHHHTTSCTTCEEEECSCGGGBCHHHHH
T ss_pred CCCEEEEECCCcc-cc---CcccCCCHHHHHhhCCEEEEeCcCchHHHHHhCHHHHhhCCCCCEEEECCCCcccCHHHHH
Confidence 9999999999875 21 1223458999999999999999999999999999999999999999999999999999999
Q ss_pred HhHhcCCceEEEEecc-CCCCCCCCCccccCCcEEEcCCCCCC--cHHHHHHHHHHHHHHHHHHHcCCCCCccccCC
Q 007512 299 RALDSGRVAQAALDVF-TEEPPPADSKLVQHERVTVTPHLGAS--TMEAQEGVAIEIAEAVVGALKGELAATAVNAP 372 (600)
Q Consensus 299 ~aL~~g~i~ga~lDv~-~~EP~~~~~~L~~~~nvilTPH~~~~--t~ea~~~~~~~~~~~l~~~l~g~~~~~~vn~~ 372 (600)
++|++|+|+||++||| ++||+++++|||++||+++|||+++. |.|+++++...+++|+.+|++|+.+.+.||+.
T Consensus 222 ~aL~~g~i~gA~lDv~~~~ep~~~~~~L~~~~nviltPH~~~~~~t~e~~~~~~~~~~~nl~~~~~g~~~~~~v~~~ 298 (303)
T 1qp8_A 222 RILKERPQFIFASDVWWGRNDFAKDAEFFSLPNVVATPWVAGGYGNERVWRQMVMEAVRNLITYATGGRPRNIAKRE 298 (303)
T ss_dssp HHHHHCTTCEEEESCCTTTTCCGGGHHHHTSTTEEECCSCSSSSSCHHHHHHHHHHHHHHHHHHHTTSCCSCBCCGG
T ss_pred HHHHhCCceEEEeccCCCCCCCCCCChhhcCCCEEECCCcCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCceeCHH
Confidence 9999999999999999 88999889999999999999999998 99999999999999999999999988888853
|
| >3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-55 Score=470.06 Aligned_cols=279 Identities=29% Similarity=0.438 Sum_probs=249.9
Q ss_pred CCCeEEEecCCCHhHHHHhcccCcEEEccC--CCHhHHhhhcCCceEEEEcCCCCCCHHHHhccCCCceEEEEcCcccCc
Q 007512 57 SKPTVLIAEKLGQAGLDLLNEFANVDCAYN--LSPEELCTKISLCDALIVRSGTKVNRDVFESSAGRLKVVGRAGVGIDN 134 (600)
Q Consensus 57 ~~~~ilv~~~l~~~~~~~l~~~~~v~~~~~--~~~~el~~~i~~~d~li~~~~~~~~~~~l~~~~~~Lk~I~~~g~G~d~ 134 (600)
++|||++.+.++ ...+++++.+++.+... ++.+ .+.++|++++++.+++++++++. ++||||+++|+|+||
T Consensus 2 ~mmkIl~~~~~p-~~~~~~~~~~~v~~~~~~~~~~~----~l~~ad~li~~~~~~v~~~ll~~--~~Lk~I~~~~~G~D~ 74 (381)
T 3oet_A 2 NAMKILVDENMP-YARELFSRLGEVKAVPGRPIPVE----ELNHADALMVRSVTKVNESLLSG--TPINFVGTATAGTDH 74 (381)
T ss_dssp CCCEEEEETTST-THHHHHTTSSEEEEECC---CHH----HHTTCSEEEECTTSCBSHHHHTT--SCCCEEEESSSCCTT
T ss_pred CceEEEECCCCc-HHHHHHhhCCcEEEeCCCCCCHH----HHCCCEEEEECCCCCCCHHHHcC--CCCEEEEEccccccc
Confidence 468999998874 46788888888776432 2333 47899999999888999999994 469999999999999
Q ss_pred cChhHHHhCCceeecCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCccccccccceeccCCEEEEEecChhHHHHHH
Q 007512 135 VDLAAATEFGCLVVNAPTANTVAAAEHGIALLAAMARNVAQADASVKAGKWQRNKYVGVSLVGKTLAVLGFGKVGSEVAR 214 (600)
Q Consensus 135 iD~~aa~~~GI~V~n~p~~~~~~vAE~~l~lll~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktiGIIGlG~IG~~vA~ 214 (600)
||+++|+++||.|+|+||+|+.+||||+++++|+++|+. |.+++||||||||+|+||+++|+
T Consensus 75 iD~~~~~~~gI~v~n~pg~~~~~VAE~~l~~lL~l~r~~------------------g~~l~gktvGIIGlG~IG~~vA~ 136 (381)
T 3oet_A 75 VDEAWLKQAGIGFSAAPGCNAIAVVEYVFSALLMLAERD------------------GFSLRDRTIGIVGVGNVGSRLQT 136 (381)
T ss_dssp BCHHHHHHTTCEEECCTTTTHHHHHHHHHHHHHHHHHHT------------------TCCGGGCEEEEECCSHHHHHHHH
T ss_pred cCHHHHHhCCEEEEECCCcCcchhHHHHHHHHHHHHHhc------------------CCccCCCEEEEEeECHHHHHHHH
Confidence 999999999999999999999999999999999999852 56899999999999999999999
Q ss_pred HhhcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEecCCCcc----ccccccHhHhccCCCceEEEEccCCc
Q 007512 215 RAKGLGMHVIAHDPYAPADRARAIGVDLVSFDEAIATADFISLHMPLTPA----TSKVLNDETFGKMKKGVRIINVARGG 290 (600)
Q Consensus 215 ~l~~~g~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Pl~~~----t~~li~~~~l~~mk~gailvNvarg~ 290 (600)
++++|||+|++|||+.. ....+....++++++++||+|++|+|++++ |+++++++.|+.||+|++|||+|||+
T Consensus 137 ~l~a~G~~V~~~d~~~~---~~~~~~~~~sl~ell~~aDiV~l~~Plt~~g~~~T~~li~~~~l~~mk~gailIN~aRG~ 213 (381)
T 3oet_A 137 RLEALGIRTLLCDPPRA---ARGDEGDFRTLDELVQEADVLTFHTPLYKDGPYKTLHLADETLIRRLKPGAILINACRGP 213 (381)
T ss_dssp HHHHTTCEEEEECHHHH---HTTCCSCBCCHHHHHHHCSEEEECCCCCCSSTTCCTTSBCHHHHHHSCTTEEEEECSCGG
T ss_pred HHHHCCCEEEEECCChH---HhccCcccCCHHHHHhhCCEEEEcCcCCccccccchhhcCHHHHhcCCCCcEEEECCCCc
Confidence 99999999999998531 112455677999999999999999999999 99999999999999999999999999
Q ss_pred cccHHHHHHhHhcCCceEEEEeccCCCCCCCCCccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCC
Q 007512 291 VIDEEALVRALDSGRVAQAALDVFTEEPPPADSKLVQHERVTVTPHLGASTMEAQEGVAIEIAEAVVGALKGELA 365 (600)
Q Consensus 291 ivde~aL~~aL~~g~i~ga~lDv~~~EP~~~~~~L~~~~nvilTPH~~~~t~ea~~~~~~~~~~~l~~~l~g~~~ 365 (600)
++|+++|+++|++|+++||++|||+.||++ +++||.++ +++|||+||+|.|++.++..++++++.+|+.+..-
T Consensus 214 vvde~aL~~aL~~g~i~gA~LDV~e~EP~~-~~~L~~~~-~i~TPHiag~t~e~~~~~~~~~~~~l~~~l~~~~~ 286 (381)
T 3oet_A 214 VVDNAALLARLNAGQPLSVVLDVWEGEPDL-NVALLEAV-DIGTSHIAGYTLEGKARGTTQVFEAYSAFIGREQR 286 (381)
T ss_dssp GBCHHHHHHHHHTTCCEEEEESCCTTTTSC-CHHHHHHS-SEECSSCTTCCHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred ccCHHHHHHHHHhCCCeEEEeeccccCCCC-cchhhhCC-EEECCccCcCcHHHHHHHHHHHHHHHHHHHcCCcc
Confidence 999999999999999999999999999986 56798765 78999999999999999999999999999987543
|
| >3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-55 Score=450.55 Aligned_cols=277 Identities=25% Similarity=0.356 Sum_probs=240.9
Q ss_pred eEEEecCCC----HhHHHHhcccCcEEEccCCCHhHHhhhcCCceEEEEcCCCCCCHHHHhccCCCceEEEEcCcccCcc
Q 007512 60 TVLIAEKLG----QAGLDLLNEFANVDCAYNLSPEELCTKISLCDALIVRSGTKVNRDVFESSAGRLKVVGRAGVGIDNV 135 (600)
Q Consensus 60 ~ilv~~~l~----~~~~~~l~~~~~v~~~~~~~~~el~~~i~~~d~li~~~~~~~~~~~l~~~~~~Lk~I~~~g~G~d~i 135 (600)
+|++..++. +.+.+.|+.+. +.+ .+.+.++|++++ +.+++ ++ |+||||++.|+|+|||
T Consensus 2 ~~~~~~~~~~~~~~~~~~~l~~~~-~~~---------~~~~~~ad~li~-~~~~~------~~-~~Lk~I~~~~~G~d~i 63 (290)
T 3gvx_A 2 DVYVNFPADGHVREIAKTVLDGFD-LHW---------YPDYYDAEAQVI-KDRYV------LG-KRTKMIQAISAGVDHI 63 (290)
T ss_dssp CEEECSCCCHHHHHHHHHHTTTSC-EEE---------TTSCCCCSEEEE-SSCCC------CC-SSCCEEEECSSCCTTS
T ss_pred ceEEecCCcchHHHHHHHHhcccc-ccc---------Ccchhhhhhhhh-hhhhh------hh-hhhHHHHHHhcCCcee
Confidence 466666654 44555565542 222 157899999998 34443 44 6999999999999999
Q ss_pred ChhHHHhCCceeecCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCccccccccceeccCCEEEEEecChhHHHHHHH
Q 007512 136 DLAAATEFGCLVVNAPTANTVAAAEHGIALLAAMARNVAQADASVKAGKWQRNKYVGVSLVGKTLAVLGFGKVGSEVARR 215 (600)
Q Consensus 136 D~~aa~~~GI~V~n~p~~~~~~vAE~~l~lll~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktiGIIGlG~IG~~vA~~ 215 (600)
|+++|+++||.+.| ++.|+.+||||++++||+++|+++.+++.+++|+|.+.. ..+++|+||||||+|.||+++|++
T Consensus 64 d~~~~~~~~~~~~~-~~~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~~--~~~l~g~tvGIIGlG~IG~~vA~~ 140 (290)
T 3gvx_A 64 DVNGIPENVVLCSN-AGAYSISVAEHAFALLLAHAKNILENNELMKAGIFRQSP--TTLLYGKALGILGYGGIGRRVAHL 140 (290)
T ss_dssp CGGGSCTTSEEECC-HHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCC--CCCCTTCEEEEECCSHHHHHHHHH
T ss_pred ecCCCccceEEeec-CCcceeeHHHHHHHHHHHHHHhhhhhhhHhhhcccccCC--ceeeecchheeeccCchhHHHHHH
Confidence 99999987765555 589999999999999999999999999999999998753 378999999999999999999999
Q ss_pred hhcCCCEEEEECCCCChhHHHHcCCccc-CHHHHhccCCEEEEecCCCccccccccHhHhccCCCceEEEEccCCccccH
Q 007512 216 AKGLGMHVIAHDPYAPADRARAIGVDLV-SFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVIDE 294 (600)
Q Consensus 216 l~~~g~~V~~~d~~~~~~~a~~~g~~~~-~l~ell~~aDvV~l~~Pl~~~t~~li~~~~l~~mk~gailvNvarg~ivde 294 (600)
+++|||+|++||++..... .+... ++++++++||+|++|+|++++|+++++++.|+.||+|++|||+|||+++|+
T Consensus 141 l~~~G~~V~~~dr~~~~~~----~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~~mk~gailIN~aRG~~vd~ 216 (290)
T 3gvx_A 141 AKAFGMRVIAYTRSSVDQN----VDVISESPADLFRQSDFVLIAIPLTDKTRGMVNSRLLANARKNLTIVNVARADVVSK 216 (290)
T ss_dssp HHHHTCEEEEECSSCCCTT----CSEECSSHHHHHHHCSEEEECCCCCTTTTTCBSHHHHTTCCTTCEEEECSCGGGBCH
T ss_pred HHhhCcEEEEEeccccccc----cccccCChHHHhhccCeEEEEeeccccchhhhhHHHHhhhhcCceEEEeehhcccCC
Confidence 9999999999999863221 13444 899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhHhcCCceEEEEeccCCCCCCCCCccccCCcEEEcCCCC-CCcHHHHHHHHHHHHHHHHHHHcCCC
Q 007512 295 EALVRALDSGRVAQAALDVFTEEPPPADSKLVQHERVTVTPHLG-ASTMEAQEGVAIEIAEAVVGALKGEL 364 (600)
Q Consensus 295 ~aL~~aL~~g~i~ga~lDv~~~EP~~~~~~L~~~~nvilTPH~~-~~t~ea~~~~~~~~~~~l~~~l~g~~ 364 (600)
++|+++|++|++.||++|||+.||+ +|||++||+++|||+| ++|.|+++++...+++|+.+|++|++
T Consensus 217 ~aL~~aL~~g~i~ga~lDV~~~EP~---~pL~~~~nvilTPHiag~~t~e~~~~~~~~~~~ni~~~~~~~~ 284 (290)
T 3gvx_A 217 PDMIGFLKERSDVWYLSDVWWNEPE---ITETNLRNAILSPHVAGGMSGEIMDIAIQLAFENVRNFFEGEG 284 (290)
T ss_dssp HHHHHHHHHCTTCEEEESCCTTTTS---CCSCCCSSEEECCSCSSCBTTBCCHHHHHHHHHHHHHHTC---
T ss_pred cchhhhhhhccceEEeeccccCCcc---cchhhhhhhhcCccccCCccchHHHHHHHHHHHHHHhhhcCCC
Confidence 9999999999999999999999986 8999999999999999 99999999999999999999999876
|
| >2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-53 Score=449.25 Aligned_cols=280 Identities=28% Similarity=0.414 Sum_probs=248.0
Q ss_pred CeEEEecCCCHhHHHHhcccCcEEEccCCCHhHHhhhcCCceEEEEcCCCCCCHHHHhccCCCceEEEEcCcccCccChh
Q 007512 59 PTVLIAEKLGQAGLDLLNEFANVDCAYNLSPEELCTKISLCDALIVRSGTKVNRDVFESSAGRLKVVGRAGVGIDNVDLA 138 (600)
Q Consensus 59 ~~ilv~~~l~~~~~~~l~~~~~v~~~~~~~~~el~~~i~~~d~li~~~~~~~~~~~l~~~~~~Lk~I~~~g~G~d~iD~~ 138 (600)
|||++.+.+.. ..+.+++.+++.+... .+...+.+.++|++++++.+++++++++ + |+||+|+++|+|+||||++
T Consensus 1 mkil~~~~~~~-~~~~~~~~~~v~~~~~--~~~~~~~l~~ad~li~~~~~~~~~~~l~-~-~~Lk~I~~~~~G~D~iD~~ 75 (380)
T 2o4c_A 1 MRILADENIPV-VDAFFADQGSIRRLPG--RAIDRAALAEVDVLLVRSVTEVSRAALA-G-SPVRFVGTCTIGTDHLDLD 75 (380)
T ss_dssp CEEEEETTCTT-HHHHHGGGSEEEEECG--GGCSTTTTTTCSEEEECTTSCBCHHHHT-T-SCCCEEEECSSCSTTBCHH
T ss_pred CEEEEecCchH-HHHHHHhCCcEEEecC--CcCChHHHCCcEEEEEcCCCCCCHHHhc-C-CCceEEEEcCcccchhhHH
Confidence 47888887654 4677777767665331 1112235689999999988899999999 6 6999999999999999999
Q ss_pred HHHhCCceeecCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCccccccccceeccCCEEEEEecChhHHHHHHHhhc
Q 007512 139 AATEFGCLVVNAPTANTVAAAEHGIALLAAMARNVAQADASVKAGKWQRNKYVGVSLVGKTLAVLGFGKVGSEVARRAKG 218 (600)
Q Consensus 139 aa~~~GI~V~n~p~~~~~~vAE~~l~lll~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktiGIIGlG~IG~~vA~~l~~ 218 (600)
+|+++||.|+|+||+|+.+||||++++||+++|+ | |.++.|+||||||+|+||+++|+++++
T Consensus 76 ~~~~~gI~v~n~pg~~~~~vAE~~l~~lL~l~r~------------~------~~~l~g~tvGIIGlG~IG~~vA~~l~~ 137 (380)
T 2o4c_A 76 YFAEAGIAWSSAPGCNARGVVDYVLGCLLAMAEV------------R------GADLAERTYGVVGAGQVGGRLVEVLRG 137 (380)
T ss_dssp HHHHHTCEEECCTTTTHHHHHHHHHHHHHHHHHH------------H------TCCGGGCEEEEECCSHHHHHHHHHHHH
T ss_pred HHHhCCCEEEeCCCcChHHHHHHHHHHHHHHHhh------------h------hcccCCCEEEEEeCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999996 2 468999999999999999999999999
Q ss_pred CCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEecCCCcc----ccccccHhHhccCCCceEEEEccCCccccH
Q 007512 219 LGMHVIAHDPYAPADRARAIGVDLVSFDEAIATADFISLHMPLTPA----TSKVLNDETFGKMKKGVRIINVARGGVIDE 294 (600)
Q Consensus 219 ~g~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Pl~~~----t~~li~~~~l~~mk~gailvNvarg~ivde 294 (600)
|||+|++|||+... ...|....++++++++||+|++|+|++++ |+++++++.|+.||+|++|||+|||+++|+
T Consensus 138 ~G~~V~~~d~~~~~---~~~g~~~~~l~ell~~aDvV~l~~Plt~~g~~~T~~li~~~~l~~mk~gailIN~sRG~vvd~ 214 (380)
T 2o4c_A 138 LGWKVLVCDPPRQA---REPDGEFVSLERLLAEADVISLHTPLNRDGEHPTRHLLDEPRLAALRPGTWLVNASRGAVVDN 214 (380)
T ss_dssp TTCEEEEECHHHHH---HSTTSCCCCHHHHHHHCSEEEECCCCCSSSSSCCTTSBCHHHHHTSCTTEEEEECSCGGGBCH
T ss_pred CCCEEEEEcCChhh---hccCcccCCHHHHHHhCCEEEEeccCccccccchhhhcCHHHHhhCCCCcEEEECCCCcccCH
Confidence 99999999986421 13455667999999999999999999999 999999999999999999999999999999
Q ss_pred HHHHHhHhcCCceEEEEeccCCCCCCCCCccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCC
Q 007512 295 EALVRALDSGRVAQAALDVFTEEPPPADSKLVQHERVTVTPHLGASTMEAQEGVAIEIAEAVVGALKGELAA 366 (600)
Q Consensus 295 ~aL~~aL~~g~i~ga~lDv~~~EP~~~~~~L~~~~nvilTPH~~~~t~ea~~~~~~~~~~~l~~~l~g~~~~ 366 (600)
++|+++|++|+|+||++|||+.||++ +++|+. +|+++|||+|++|.|++.++...+++|+.+++.|....
T Consensus 215 ~aL~~aL~~g~i~~A~LDV~~~EP~~-~~~l~~-~nvi~TPHiag~t~e~~~~~~~~~~~nl~~~l~g~~~~ 284 (380)
T 2o4c_A 215 QALRRLLEGGADLEVALDVWEGEPQA-DPELAA-RCLIATPHIAGYSLEGKLRGTAQIYQAYCAWRGIAERV 284 (380)
T ss_dssp HHHHHHHHTTCCEEEEESCCTTTTSC-CHHHHT-TCSEECSSCTTCCHHHHHHHHHHHHHHHHHHHTCCCCC
T ss_pred HHHHHHHHhCCCceEEeeeeccCCCC-chhhcc-CCEEEccccCcCCHHHHHHHHHHHHHHHHHHHcCCCcc
Confidence 99999999999999999999999964 678886 59999999999999999999999999999999988643
|
| >1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-37 Score=339.89 Aligned_cols=271 Identities=18% Similarity=0.194 Sum_probs=230.8
Q ss_pred CCceEEE-EcCcccCccChhHHHhCCceeecCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCccccccccceeccCC
Q 007512 120 GRLKVVG-RAGVGIDNVDLAAATEFGCLVVNAPTANTVAAAEHGIALLAAMARNVAQADASVKAGKWQRNKYVGVSLVGK 198 (600)
Q Consensus 120 ~~Lk~I~-~~g~G~d~iD~~aa~~~GI~V~n~p~~~~~~vAE~~l~lll~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gk 198 (600)
++++.|+ .+++|+|++ ++|+++||.|+|+|++|+ ++|| +++|++....+.++.| |.+ +.+.++.||
T Consensus 192 ~~l~gi~eet~~Gvd~l--~a~~~~Gilv~p~~~vn~-sVae-------~l~r~~~~~~~~l~~g-w~r--~~~~~l~Gk 258 (479)
T 1v8b_A 192 KKIIGVSEETTTGVLRL--KKMDKQNELLFTAINVND-AVTK-------QKYDNVYGCRHSLPDG-LMR--ATDFLISGK 258 (479)
T ss_dssp TTCCEEEECSHHHHHHH--HHHHHTTCCCSEEEECTT-SHHH-------HTTHHHHHHHHHHHHH-HHH--HHCCCCTTS
T ss_pred cCeEEEEEeeCccHhHH--HHHHHcCCEEeccCCccH-HHHH-------HHHhchHhHHHHHhhh-hhh--ccccccCCC
Confidence 4899998 889999998 899999999999999999 9999 4578999999999988 975 457899999
Q ss_pred EEEEEecChhHHHHHHHhhcCCCEEEEECCCCCh-hHHHHcCCcccCHHHHhccCCEEEEecCCCccccccccHhHhccC
Q 007512 199 TLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPA-DRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVLNDETFGKM 277 (600)
Q Consensus 199 tiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~~-~~a~~~g~~~~~l~ell~~aDvV~l~~Pl~~~t~~li~~~~l~~m 277 (600)
+|||||+|.||+++|+++++|||+|++||++... ..+...|+...++++++++||+|++|+ .|+++++++.|+.|
T Consensus 259 tVgIIG~G~IG~~vA~~l~~~G~~Viv~d~~~~~~~~a~~~g~~~~~l~ell~~aDiVi~~~----~t~~lI~~~~l~~M 334 (479)
T 1v8b_A 259 IVVICGYGDVGKGCASSMKGLGARVYITEIDPICAIQAVMEGFNVVTLDEIVDKGDFFITCT----GNVDVIKLEHLLKM 334 (479)
T ss_dssp EEEEECCSHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHTTTCEECCHHHHTTTCSEEEECC----SSSSSBCHHHHTTC
T ss_pred EEEEEeeCHHHHHHHHHHHhCcCEEEEEeCChhhHHHHHHcCCEecCHHHHHhcCCEEEECC----ChhhhcCHHHHhhc
Confidence 9999999999999999999999999999998743 356677888889999999999999995 68999999999999
Q ss_pred CCceEEEEccCCcc-ccHHHHHH--hHhcCCceEEEEeccCCCCCCCCCccccC--CcEEEcCCCC-CCcHH-HHHHHHH
Q 007512 278 KKGVRIINVARGGV-IDEEALVR--ALDSGRVAQAALDVFTEEPPPADSKLVQH--ERVTVTPHLG-ASTME-AQEGVAI 350 (600)
Q Consensus 278 k~gailvNvarg~i-vde~aL~~--aL~~g~i~ga~lDv~~~EP~~~~~~L~~~--~nvilTPH~~-~~t~e-a~~~~~~ 350 (600)
|+|++|||+|||++ ||+++|.+ +|++|+|+ +++|+| |++.++|||.+ +|+++| |+| +++.+ ++..++.
T Consensus 335 K~gailiNvgrg~~EId~~aL~~~~AL~~g~I~-a~lDv~---plp~~~~l~~l~~~nvv~t-H~atghp~e~~~~s~a~ 409 (479)
T 1v8b_A 335 KNNAVVGNIGHFDDEIQVNELFNYKGIHIENVK-PQVDRI---TLPNGNKIIVLARGRLLNL-GCATGHPAFVMSFSFCN 409 (479)
T ss_dssp CTTCEEEECSSTTTSBCHHHHHTSTTCEEEEEE-TTEEEE---ECTTSCEEEEEGGGSBHHH-HSSCCSCHHHHHHHHHH
T ss_pred CCCcEEEEeCCCCccccchhhhccccceeeeEe-eeEEEE---ECCCCCeeeEecCCCEEEE-eccCCCCchhHHHHHHH
Confidence 99999999999999 99999999 99999997 999998 33457899988 999999 999 66766 7888999
Q ss_pred HHHHHHHHHHcCC--CCCccccCCCCChhhhhcccchHHHHHHHHHHHHHHhcCCCCceEEEEEEeecCC
Q 007512 351 EIAEAVVGALKGE--LAATAVNAPMVPAEVLTELKPFVELAEKLGRLAVQLVAGGSGVKTVKVSYASSRA 418 (600)
Q Consensus 351 ~~~~~l~~~l~g~--~~~~~vn~~~i~~~~~~~~~p~~~la~~lG~l~~qL~~g~~~~k~v~i~~~Gs~a 418 (600)
++++|+..|++|+ .+.+.|+. ++..+-+.+.+ +.| +++|....||..+ ..+.+.+.+.|.+.
T Consensus 410 ~~~~ni~~~~~g~~~~l~n~V~~--lp~~~de~va~-l~L-~~lG~~l~~lt~~--q~~yi~v~~~g~~~ 473 (479)
T 1v8b_A 410 QTFAQLDLWQNKDTNKYENKVYL--LPKHLDEKVAL-YHL-KKLNASLTELDDN--QCQFLGVNKSGPFK 473 (479)
T ss_dssp HHHHHHHHHHTTTSSSCCSSEEC--CCHHHHHHHHH-HHH-GGGTCCCCCCCHH--HHHHHTCCTTSCCS
T ss_pred HHHHHHHHHHcCCCCcCCcceEe--CChhhHHHHHH-HHH-HHcCChHhhcChh--hhhhEeeeeCCCCC
Confidence 9999999999998 77776662 34445555666 344 6666666666655 45566677777776
|
| >3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-38 Score=343.04 Aligned_cols=271 Identities=19% Similarity=0.230 Sum_probs=227.3
Q ss_pred CCceEEE-EcCcccCccChhHHHhCCceeecCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCccccccccceeccCC
Q 007512 120 GRLKVVG-RAGVGIDNVDLAAATEFGCLVVNAPTANTVAAAEHGIALLAAMARNVAQADASVKAGKWQRNKYVGVSLVGK 198 (600)
Q Consensus 120 ~~Lk~I~-~~g~G~d~iD~~aa~~~GI~V~n~p~~~~~~vAE~~l~lll~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gk 198 (600)
+++|.|+ .+++|+|++ ++|+++||.|+|+|++|+ +|||+ ++|++....+.++.| |.+ +.|.++.||
T Consensus 212 ~~l~gi~eet~~Gvd~l--~a~~~~Gilv~n~~~vn~-sVae~-------l~r~~~~~~~~l~~g-w~~--~~g~~L~Gk 278 (494)
T 3d64_A 212 AHIKGVTEETTTGVHRL--YQMEKDGRLPFPAFNVND-SVTKS-------KFDNLYGCRESLVDG-IKR--ATDVMIAGK 278 (494)
T ss_dssp TTCCCEEECSHHHHHHH--HHHHHTTCCCSCEEECTT-SHHHH-------HHHHHHHHHTTHHHH-HHH--HHCCCCTTC
T ss_pred hCcEEEEEEcccCHhhH--HHHHHCCCEEEECCCccH-HHHHH-------HHhhhHhhhhhhhhh-hhh--ccccccCCC
Confidence 4899998 889999998 899999999999999999 99994 458888777777777 864 467899999
Q ss_pred EEEEEecChhHHHHHHHhhcCCCEEEEECCCCChh-HHHHcCCcccCHHHHhccCCEEEEecCCCccccccccHhHhccC
Q 007512 199 TLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPAD-RARAIGVDLVSFDEAIATADFISLHMPLTPATSKVLNDETFGKM 277 (600)
Q Consensus 199 tiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~~~-~a~~~g~~~~~l~ell~~aDvV~l~~Pl~~~t~~li~~~~l~~m 277 (600)
|+||||+|.||+.+|+++++|||+|++||++.... .+...|+...++++++++||+|++|+ .|+++|+++.|+.|
T Consensus 279 tVgIIG~G~IG~~vA~~l~~~G~~V~v~d~~~~~~~~a~~~G~~~~~l~ell~~aDiVi~~~----~t~~lI~~~~l~~M 354 (494)
T 3d64_A 279 IAVVAGYGDVGKGCAQSLRGLGATVWVTEIDPICALQAAMEGYRVVTMEYAADKADIFVTAT----GNYHVINHDHMKAM 354 (494)
T ss_dssp EEEEECCSHHHHHHHHHHHTTTCEEEEECSCHHHHHHHHTTTCEECCHHHHTTTCSEEEECS----SSSCSBCHHHHHHC
T ss_pred EEEEEccCHHHHHHHHHHHHCCCEEEEEeCChHhHHHHHHcCCEeCCHHHHHhcCCEEEECC----CcccccCHHHHhhC
Confidence 99999999999999999999999999999987432 45566888889999999999999997 58999999999999
Q ss_pred CCceEEEEccCCcc-ccHHHHHHhHhcCCceEEEEeccCCCCCCCCCccccC--CcEEEcCCCC-CCcHH-HHHHHHHHH
Q 007512 278 KKGVRIINVARGGV-IDEEALVRALDSGRVAQAALDVFTEEPPPADSKLVQH--ERVTVTPHLG-ASTME-AQEGVAIEI 352 (600)
Q Consensus 278 k~gailvNvarg~i-vde~aL~~aL~~g~i~ga~lDv~~~EP~~~~~~L~~~--~nvilTPH~~-~~t~e-a~~~~~~~~ 352 (600)
|+|++|||+|||++ ||+++| ++|++|+|+ +++|+ +|++.++|||.+ +|+++| |+| +++.+ ++..++..+
T Consensus 355 K~gAilINvgrg~veID~~aL-~AL~~g~I~-~~~Dv---~plp~~~pL~~l~~~nvv~t-H~atg~~~~~~~~~~a~~~ 428 (494)
T 3d64_A 355 RHNAIVCNIGHFDSEIDVAST-RQYQWENIK-PQVDH---IIFPDGKRVILLAEGRLVNL-GCATGHPSFVMSNSFTNQT 428 (494)
T ss_dssp CTTEEEEECSSSSCSBCCGGG-TTSEEEEEE-TTEEE---EECTTSCEEEEEGGGSBHHH-HTSCCSCHHHHHHHHHHHH
T ss_pred CCCcEEEEcCCCcchhchHHH-HhhhcCccc-eeEEE---EECCCCCchhhcCCCCEEEE-eCcCCCCHHHHHHHHHHHH
Confidence 99999999999999 699999 999999996 55555 577778999998 999999 999 66754 788899999
Q ss_pred HHHHHHHHcCCCCCccccCCCCChhhhhcccchHHHHHHHHHHHHHHhcCCCCceEEEEEEeecCCC
Q 007512 353 AEAVVGALKGELAATAVNAPMVPAEVLTELKPFVELAEKLGRLAVQLVAGGSGVKTVKVSYASSRAP 419 (600)
Q Consensus 353 ~~~l~~~l~g~~~~~~vn~~~i~~~~~~~~~p~~~la~~lG~l~~qL~~g~~~~k~v~i~~~Gs~a~ 419 (600)
++|+..|++|..+.+.|+. ++.++-+.+.+ +.| +++|....||..+ ..+-+.+.+.|.+.+
T Consensus 429 ~~ni~~~~~g~~~~n~V~~--lp~~~d~~va~-l~L-~~~g~~~~~l~~~--q~~y~~v~~~g~~~~ 489 (494)
T 3d64_A 429 LAQIELFTRGGEYANKVYV--LPKHLDEKVAR-LHL-ARIGAQLSELSDD--QAAYIGVSKAGPFKP 489 (494)
T ss_dssp HHHHHHHHHGGGSCSSEEE--CCHHHHHHHHH-HHH-TTTTCCCCCCCHH--HHHHHTCCTTSCCSC
T ss_pred HHHHHHHHcCCCCCCceee--CChhHHHHHHH-HHH-HHcCChHHhhChh--hHHhEeeccCCCCCc
Confidence 9999999999988888862 34455555555 455 6677666666665 556666777777763
|
| >3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.95 E-value=5.4e-28 Score=249.91 Aligned_cols=207 Identities=20% Similarity=0.229 Sum_probs=168.9
Q ss_pred CCCCCeEEEecC--CCHhHHHHhccc-CcEEEccC----------CCHhHHhhhcCCceEEEEc----------------
Q 007512 55 ISSKPTVLIAEK--LGQAGLDLLNEF-ANVDCAYN----------LSPEELCTKISLCDALIVR---------------- 105 (600)
Q Consensus 55 ~~~~~~ilv~~~--l~~~~~~~l~~~-~~v~~~~~----------~~~~el~~~i~~~d~li~~---------------- 105 (600)
++.++||++... ......+.|++. .+|.+... ...+++.+.++++|+++++
T Consensus 2 ~~~~m~i~v~~~~~~~~~~~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~~~~~~~~~~i~~~~~~ 81 (293)
T 3d4o_A 2 MLTGKHVVIIGGDARQLEIIRKLSTFDAKISLVGFDQLDDGFIGVTKMRIDEVDWNTVDAILLPISGTNEAGKVDTIFSN 81 (293)
T ss_dssp CCTTCEEEEECBCHHHHHHHHHHHHTTCEEEEESCTTCC--CTTCEEECGGGCCGGGCSEEECCTTCCCTTCBCCBSSCS
T ss_pred CccCcEEEEECCCHHHHHHHHHHHhCCCEEEEeccccccccccccccccchHHHHhcCCEEEeccccccCCceeeccccc
Confidence 567789998863 334456667664 36654321 1125667778899999985
Q ss_pred CCCCCCHHHHhccCCCceEEEEcCcccCccCh-hHHHhCCceeecCC------CCChHHHHHHHHHHHHHHHhchHHHHH
Q 007512 106 SGTKVNRDVFESSAGRLKVVGRAGVGIDNVDL-AAATEFGCLVVNAP------TANTVAAAEHGIALLAAMARNVAQADA 178 (600)
Q Consensus 106 ~~~~~~~~~l~~~~~~Lk~I~~~g~G~d~iD~-~aa~~~GI~V~n~p------~~~~~~vAE~~l~lll~~~R~i~~~~~ 178 (600)
..+++++++++++ |+||+|+ +|+||+|+ ++|+++||.|+|+| ++|+.++||++++++|..
T Consensus 82 ~~~~~~~~~l~~~-~~l~~i~---~G~d~id~~~~~~~~gi~v~~~~~~~~~~~~~~~svae~a~~~~l~~--------- 148 (293)
T 3d4o_A 82 ESIVLTEEMIEKT-PNHCVVY---SGISNTYLNQCMKKTNRTLVKLMERDDIAIYNSIPTAEGTIMMAIQH--------- 148 (293)
T ss_dssp CCCBCCHHHHHTS-CTTCEEE---ESSCCHHHHHHHHHHTCEEEEGGGCHHHHHHHHHHHHHHHHHHHHHH---------
T ss_pred CCccchHHHHHhC-CCCCEEE---ecCCCHHHHHHHHHcCCeEEEecCCceeeeeccHhHHHHHHHHHHHh---------
Confidence 3456899999998 5999997 89999998 89999999999998 899999999999988852
Q ss_pred HHHcCccccccccceeccCCEEEEEecChhHHHHHHHhhcCCCEEEEECCCCC-hhHHHHcCCcc---cCHHHHhccCCE
Q 007512 179 SVKAGKWQRNKYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAP-ADRARAIGVDL---VSFDEAIATADF 254 (600)
Q Consensus 179 ~~~~g~W~~~~~~g~~l~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~-~~~a~~~g~~~---~~l~ell~~aDv 254 (600)
.+.++.|+++||||+|.||+.+|++++++|++|++||++.. .+.+.+.|+.. .++++++++||+
T Consensus 149 ------------~~~~l~g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~l~~~l~~aDv 216 (293)
T 3d4o_A 149 ------------TDFTIHGANVAVLGLGRVGMSVARKFAALGAKVKVGARESDLLARIAEMGMEPFHISKAAQELRDVDV 216 (293)
T ss_dssp ------------CSSCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTSEEEEGGGHHHHTTTCSE
T ss_pred ------------cCCCCCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHCCCeecChhhHHHHhcCCCE
Confidence 25689999999999999999999999999999999999863 23445667654 368899999999
Q ss_pred EEEecCCCccccccccHhHhccCCCceEEEEccCCcc
Q 007512 255 ISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGV 291 (600)
Q Consensus 255 V~l~~Pl~~~t~~li~~~~l~~mk~gailvNvarg~i 291 (600)
|++|+|. ++++++.++.||+++++||++||+.
T Consensus 217 Vi~~~p~-----~~i~~~~l~~mk~~~~lin~ar~~~ 248 (293)
T 3d4o_A 217 CINTIPA-----LVVTANVLAEMPSHTFVIDLASKPG 248 (293)
T ss_dssp EEECCSS-----CCBCHHHHHHSCTTCEEEECSSTTC
T ss_pred EEECCCh-----HHhCHHHHHhcCCCCEEEEecCCCC
Confidence 9999995 6788999999999999999999754
|
| >2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.4e-25 Score=232.51 Aligned_cols=211 Identities=17% Similarity=0.201 Sum_probs=163.1
Q ss_pred CCCCCeEEEecC--CCHhHHHHhcccC-cEEEccCCC-----------HhHHhhhcCCceEEEEc---C-----------
Q 007512 55 ISSKPTVLIAEK--LGQAGLDLLNEFA-NVDCAYNLS-----------PEELCTKISLCDALIVR---S----------- 106 (600)
Q Consensus 55 ~~~~~~ilv~~~--l~~~~~~~l~~~~-~v~~~~~~~-----------~~el~~~i~~~d~li~~---~----------- 106 (600)
+++.+||++... ......+.|.+.+ +|.+. ..+ .+++.+.+.++|+++++ .
T Consensus 4 ~~~~mki~v~~~~~~~~~~~~~L~~~g~~v~~~-~~~~~~~~~~g~~~~~~~~~~~~~~d~ii~~~~~~~~~~~i~s~~a 82 (300)
T 2rir_A 4 MLTGLKIAVIGGDARQLEIIRKLTEQQADIYLV-GFDQLDHGFTGAVKCNIDEIPFQQIDSIILPVSATTGEGVVSTVFS 82 (300)
T ss_dssp CCCSCEEEEESBCHHHHHHHHHHHHTTCEEEEE-SCTTSSCCCTTEEECCGGGSCGGGCSEEECCSSCEETTTEECBSSC
T ss_pred cccCCEEEEECCCHHHHHHHHHHHhCCCEEEEE-eccccccccccceeccchHHHHhcCCEEEeccccccCCcccccccc
Confidence 456678998865 3344556666543 55543 222 12356678899999972 1
Q ss_pred CCC--CCHHHHhccCCCceEEEEcCcccCccC-hhHHHhCCceeecCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcC
Q 007512 107 GTK--VNRDVFESSAGRLKVVGRAGVGIDNVD-LAAATEFGCLVVNAPTANTVAAAEHGIALLAAMARNVAQADASVKAG 183 (600)
Q Consensus 107 ~~~--~~~~~l~~~~~~Lk~I~~~g~G~d~iD-~~aa~~~GI~V~n~p~~~~~~vAE~~l~lll~~~R~i~~~~~~~~~g 183 (600)
.++ +++++++.+ |++|+|+ +|+||+| +++|+++||.|+|+|++++ + +++|+++.+ +|
T Consensus 83 ~~~~~~~~~~l~~~-~~l~~i~---~g~~~~d~~~~~~~~gi~v~~~~~~~~--v---------~~~r~~~~~-----~g 142 (300)
T 2rir_A 83 NEEVVLKQDHLDRT-PAHCVIF---SGISNAYLENIAAQAKRKLVKLFERDD--I---------AIYNSIPTV-----EG 142 (300)
T ss_dssp SSCEECCHHHHHTS-CTTCEEE---ESSCCHHHHHHHHHTTCCEEEGGGSHH--H---------HHHHHHHHH-----HH
T ss_pred cCCccchHHHHhhc-CCCCEEE---EecCCHHHHHHHHHCCCEEEeecCCCc--e---------EEEcCccHH-----HH
Confidence 356 899999987 5899998 8999999 9999999999999999753 2 345666554 45
Q ss_pred ccccc-cccceeccCCEEEEEecChhHHHHHHHhhcCCCEEEEECCCCCh-hHHHHcCCc---ccCHHHHhccCCEEEEe
Q 007512 184 KWQRN-KYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPA-DRARAIGVD---LVSFDEAIATADFISLH 258 (600)
Q Consensus 184 ~W~~~-~~~g~~l~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~~-~~a~~~g~~---~~~l~ell~~aDvV~l~ 258 (600)
.|... ...+.++.|+|+||||+|.||+.+|++++++|++|++||++... +.+.+.|+. ..++++++++||+|++|
T Consensus 143 ~~~~~~~~~~~~l~g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~~~l~~~l~~aDvVi~~ 222 (300)
T 2rir_A 143 TIMLAIQHTDYTIHGSQVAVLGLGRTGMTIARTFAALGANVKVGARSSAHLARITEMGLVPFHTDELKEHVKDIDICINT 222 (300)
T ss_dssp HHHHHHHTCSSCSTTSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCEEEEGGGHHHHSTTCSEEEEC
T ss_pred HHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCeEEchhhHHHHhhCCCEEEEC
Confidence 67532 23578999999999999999999999999999999999998632 333455765 34789999999999999
Q ss_pred cCCCccccccccHhHhccCCCceEEEEccCCcc
Q 007512 259 MPLTPATSKVLNDETFGKMKKGVRIINVARGGV 291 (600)
Q Consensus 259 ~Pl~~~t~~li~~~~l~~mk~gailvNvarg~i 291 (600)
+|. ++++++.++.||+|+++||++||+.
T Consensus 223 ~p~-----~~i~~~~~~~mk~g~~lin~a~g~~ 250 (300)
T 2rir_A 223 IPS-----MILNQTVLSSMTPKTLILDLASRPG 250 (300)
T ss_dssp CSS-----CCBCHHHHTTSCTTCEEEECSSTTC
T ss_pred CCh-----hhhCHHHHHhCCCCCEEEEEeCCCC
Confidence 996 6788899999999999999999764
|
| >3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=2.7e-27 Score=259.82 Aligned_cols=271 Identities=21% Similarity=0.192 Sum_probs=204.5
Q ss_pred CceEE-EEcCcccCccChhHHHhCCceeecCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCccccccccceeccCCE
Q 007512 121 RLKVV-GRAGVGIDNVDLAAATEFGCLVVNAPTANTVAAAEHGIALLAAMARNVAQADASVKAGKWQRNKYVGVSLVGKT 199 (600)
Q Consensus 121 ~Lk~I-~~~g~G~d~iD~~aa~~~GI~V~n~p~~~~~~vAE~~l~lll~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gkt 199 (600)
+++-+ -.+|+|||++ .++.++||.++|+++.|. ++||+ ++|++....+.+..+ |.+. .+..+.|++
T Consensus 210 ~i~GvveetgtGVd~l--~a~~~~Gilv~~~~~vn~-sVae~-------~~r~l~~~~~s~~~g-~~r~--~~~~l~Gkt 276 (494)
T 3ce6_A 210 SVKGVTEETTTGVLRL--YQFAAAGDLAFPAINVND-SVTKS-------KFDNKYGTRHSLIDG-INRG--TDALIGGKK 276 (494)
T ss_dssp HCCCEEECSHHHHHHH--HHHHHTTCCCSCEEECTT-SHHHH-------TTHHHHHHHHHHHHH-HHHH--HCCCCTTCE
T ss_pred CeEEEEEEeCCChhHH--HHHHHcCCEEEecCCccH-HHHHH-------HHhhhhhhhhhhhHH-HHhc--cCCCCCcCE
Confidence 34444 4789999998 788999999999999999 99994 346666655555555 6542 355789999
Q ss_pred EEEEecChhHHHHHHHhhcCCCEEEEECCCC-ChhHHHHcCCcccCHHHHhccCCEEEEecCCCccccccccHhHhccCC
Q 007512 200 LAVLGFGKVGSEVARRAKGLGMHVIAHDPYA-PADRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVLNDETFGKMK 278 (600)
Q Consensus 200 iGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~-~~~~a~~~g~~~~~l~ell~~aDvV~l~~Pl~~~t~~li~~~~l~~mk 278 (600)
|+|+|+|.||+.+|++++++|++|+++|++. ..+.+.+.|+...++++++++||+|+.|++ +.++++.+.++.||
T Consensus 277 V~IiG~G~IG~~~A~~lka~Ga~Viv~d~~~~~~~~A~~~Ga~~~~l~e~l~~aDvVi~atg----t~~~i~~~~l~~mk 352 (494)
T 3ce6_A 277 VLICGYGDVGKGCAEAMKGQGARVSVTEIDPINALQAMMEGFDVVTVEEAIGDADIVVTATG----NKDIIMLEHIKAMK 352 (494)
T ss_dssp EEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECCHHHHGGGCSEEEECSS----SSCSBCHHHHHHSC
T ss_pred EEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCEEecHHHHHhCCCEEEECCC----CHHHHHHHHHHhcC
Confidence 9999999999999999999999999999987 335677889887899999999999999986 56688888999999
Q ss_pred CceEEEEccCCcc-ccHHHHHH-hHhcCCceEEEEeccCCCCCCCCCccccCCcEE----EcCCCCCCcHHHHHHHHHHH
Q 007512 279 KGVRIINVARGGV-IDEEALVR-ALDSGRVAQAALDVFTEEPPPADSKLVQHERVT----VTPHLGASTMEAQEGVAIEI 352 (600)
Q Consensus 279 ~gailvNvarg~i-vde~aL~~-aL~~g~i~ga~lDv~~~EP~~~~~~L~~~~nvi----lTPH~~~~t~ea~~~~~~~~ 352 (600)
+|++++|+||++. +|+++|.+ +++++.|. +++|+|+.+|....-.|+..++++ +|||+++.+.+.. ..++
T Consensus 353 ~ggilvnvG~~~~eId~~aL~~~aL~~~~I~-~~ldv~~~~~~~~~l~LL~~grlvnL~~~TPH~a~~~~~s~---~~qa 428 (494)
T 3ce6_A 353 DHAILGNIGHFDNEIDMAGLERSGATRVNVK-PQVDLWTFGDTGRSIIVLSEGRLLNLGNATGHPSFVMSNSF---ANQT 428 (494)
T ss_dssp TTCEEEECSSSGGGBCHHHHHHTTCEEEEEE-TTEEEEECTTTCCEEEEEGGGSCHHHHHSCCSCHHHHHHHH---HHHH
T ss_pred CCcEEEEeCCCCCccCHHHHHHhhhccceEE-EEEEEeecCCcchHHHHHhCCCEEeccCCCCCccccchHHH---HHHH
Confidence 9999999999998 89999988 78888886 567988764321112367778887 9999988877653 6788
Q ss_pred HHHHHHHHcCCCCCccccCCCCChhhhhcccchHHHHHHHHHHHHHHhcCCCCceEEEEEEeecCC
Q 007512 353 AEAVVGALKGELAATAVNAPMVPAEVLTELKPFVELAEKLGRLAVQLVAGGSGVKTVKVSYASSRA 418 (600)
Q Consensus 353 ~~~l~~~l~g~~~~~~vn~~~i~~~~~~~~~p~~~la~~lG~l~~qL~~g~~~~k~v~i~~~Gs~a 418 (600)
.+++..+.++....+.|. +.++..++.-.++.| ..+|....+|..+ ..+-+.+.+.|.|.
T Consensus 429 ~~ai~~~~~g~~~~~~V~---~~P~~~De~vA~lhL-~~lg~~l~~lt~~--q~~y~~v~~~G~~k 488 (494)
T 3ce6_A 429 IAQIELWTKNDEYDNEVY---RLPKHLDEKVARIHV-EALGGHLTKLTKE--QAEYLGVDVEGPYK 488 (494)
T ss_dssp HHHHHHHHTGGGCCSSEE---CCCHHHHHHHHHHHH-HHHTCCCCCCCHH--HHHHHTCCTTSCCS
T ss_pred HHHHHHHHcCCCCCCEEE---ECHHHHHHHHHHhhH-HHHHHHHHHhChh--HHHHcccccCCCCC
Confidence 899999999876666553 222223222222344 4555444555544 34445555666665
|
| >2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=2.3e-22 Score=214.96 Aligned_cols=245 Identities=17% Similarity=0.185 Sum_probs=183.0
Q ss_pred CCHhHHHHhcccC-cEEEc------cCCCHhHHh-----------hhcCCceEEEEcCCCCCCHHHHhccCCCceEEEEc
Q 007512 67 LGQAGLDLLNEFA-NVDCA------YNLSPEELC-----------TKISLCDALIVRSGTKVNRDVFESSAGRLKVVGRA 128 (600)
Q Consensus 67 l~~~~~~~l~~~~-~v~~~------~~~~~~el~-----------~~i~~~d~li~~~~~~~~~~~l~~~~~~Lk~I~~~ 128 (600)
+.|++.+.|.+.+ +|.+. ..++.++.. +.+.++|++ +....++++++.... ++..++...
T Consensus 18 ltP~~v~~L~~~G~~V~ve~~ag~~~~f~d~~y~~aGa~i~~~~~~~~~~adii-~~vk~p~~~e~~~l~-~~~~l~~~~ 95 (377)
T 2vhw_A 18 ITPAGVAELTRRGHEVLIQAGAGEGSAITDADFKAAGAQLVGTADQVWADADLL-LKVKEPIAAEYGRLR-HGQILFTFL 95 (377)
T ss_dssp CCHHHHHHHHHTTCEEEEETTTTGGGTCCHHHHHHHTCEEESCHHHHHHHCSEE-ECSSCCCGGGGGGCC-TTCEEEECC
T ss_pred cCHHHHHHHHhCCCEEEEeCCCCcCCCCCHHHHHHCCCEEecCHHHHhccCCEE-EEeCCCChHHHhhcC-CCCEEEEEe
Confidence 5777777776654 55542 345666554 234568966 455566766666654 578888888
Q ss_pred CcccCccChhHHHhCCceee----------cCCCCChHHHHHHHHHHHHHHH-hchHHHHHHHHcCccccccccceeccC
Q 007512 129 GVGIDNVDLAAATEFGCLVV----------NAPTANTVAAAEHGIALLAAMA-RNVAQADASVKAGKWQRNKYVGVSLVG 197 (600)
Q Consensus 129 g~G~d~iD~~aa~~~GI~V~----------n~p~~~~~~vAE~~l~lll~~~-R~i~~~~~~~~~g~W~~~~~~g~~l~g 197 (600)
..++|..+++++.++||.++ |.|.+++ .||++..+++.+. |++. ..+.|+|.... ...++.|
T Consensus 96 ~~~~~~~~l~~l~~~gi~~ia~e~v~~~~~~~p~~s~--~ae~ag~~a~~~a~r~l~----~~~~g~~~~~~-~~~~l~g 168 (377)
T 2vhw_A 96 HLAASRACTDALLDSGTTSIAYETVQTADGALPLLAP--MSEVAGRLAAQVGAYHLM----RTQGGRGVLMG-GVPGVEP 168 (377)
T ss_dssp CGGGCHHHHHHHHHHTCEEEEGGGCCCTTSCCTTTHH--HHHHHHHHHHHHHHHHTS----GGGTSCCCCTT-CBTTBCC
T ss_pred cccCCHHHHHHHHHcCCeEEEeeeccccCCCccccCc--hHHHHHHHHHHHHHHHHH----HhcCCCccccc-CCCCCCC
Confidence 88999999999999999997 6676654 5599985554444 7663 33445543211 1136899
Q ss_pred CEEEEEecChhHHHHHHHhhcCCCEEEEECCCCC-hhHHHH-cCCc-------ccCHHHHhccCCEEEEec--CCCcccc
Q 007512 198 KTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAP-ADRARA-IGVD-------LVSFDEAIATADFISLHM--PLTPATS 266 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~-~~~a~~-~g~~-------~~~l~ell~~aDvV~l~~--Pl~~~t~ 266 (600)
++++|+|+|.||+.+|+.++++|++|+++|++.. .+.+.+ .|.. ..+++++++++|+|+.|+ |.+ ++.
T Consensus 169 ~~V~ViG~G~iG~~~a~~a~~~Ga~V~~~d~~~~~l~~~~~~~g~~~~~~~~~~~~l~~~l~~aDvVi~~~~~p~~-~t~ 247 (377)
T 2vhw_A 169 ADVVVIGAGTAGYNAARIANGMGATVTVLDINIDKLRQLDAEFCGRIHTRYSSAYELEGAVKRADLVIGAVLVPGA-KAP 247 (377)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTTSSEEEECCHHHHHHHHHHCSEEEECCCCTTS-CCC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHhcCCeeEeccCCHHHHHHHHcCCCEEEECCCcCCC-CCc
Confidence 9999999999999999999999999999999863 233443 4543 235778899999999977 544 688
Q ss_pred ccccHhHhccCCCceEEEEcc--CCccccHHHHHHhHhcCCceEEEEeccCC-CCCCCCCccccCCcEE--EcCCCCCCc
Q 007512 267 KVLNDETFGKMKKGVRIINVA--RGGVIDEEALVRALDSGRVAQAALDVFTE-EPPPADSKLVQHERVT--VTPHLGAST 341 (600)
Q Consensus 267 ~li~~~~l~~mk~gailvNva--rg~ivde~aL~~aL~~g~i~ga~lDv~~~-EP~~~~~~L~~~~nvi--lTPH~~~~t 341 (600)
++++++.++.||+|++|||++ +|+ ||+. ||.+.+.|++..++++ +|||+++.+
T Consensus 248 ~li~~~~l~~mk~g~~iV~va~~~Gg----------------------v~e~~ep~~~~~~~~~~~~v~i~~~phl~~~~ 305 (377)
T 2vhw_A 248 KLVSNSLVAHMKPGAVLVDIAIDQGG----------------------CFEGSRPTTYDHPTFAVHDTLFYCVANMPASV 305 (377)
T ss_dssp CCBCHHHHTTSCTTCEEEEGGGGTTC----------------------SBTTCCCBCSSSCEEEETTEEEECBTTGGGGS
T ss_pred ceecHHHHhcCCCCcEEEEEecCCCC----------------------ccccccCCCCCCCEEEECCEEEEecCCcchhh
Confidence 999999999999999999998 332 6777 8877788999999998 999999988
Q ss_pred HH
Q 007512 342 ME 343 (600)
Q Consensus 342 ~e 343 (600)
..
T Consensus 306 ~~ 307 (377)
T 2vhw_A 306 PK 307 (377)
T ss_dssp HH
T ss_pred HH
Confidence 65
|
| >2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.8e-18 Score=184.31 Aligned_cols=276 Identities=16% Similarity=0.163 Sum_probs=176.4
Q ss_pred CCHhHHHHhcccC-cEEEc------cCCCHhHHhh----------hcCCceEEEEcCCCCCCHHHHhccCCCceEEEEcC
Q 007512 67 LGQAGLDLLNEFA-NVDCA------YNLSPEELCT----------KISLCDALIVRSGTKVNRDVFESSAGRLKVVGRAG 129 (600)
Q Consensus 67 l~~~~~~~l~~~~-~v~~~------~~~~~~el~~----------~i~~~d~li~~~~~~~~~~~l~~~~~~Lk~I~~~g 129 (600)
+.|++.+.|.+.+ +|.+. ..++.++..+ .+ ++|+++ ....++. +.++.+++++++|+...
T Consensus 18 l~P~~v~~L~~~g~~v~ve~~ag~~~~~~d~~y~~aga~i~~~~~~~-~ad~il-~vk~p~~-~~~~~l~~~~~~~~~~~ 94 (369)
T 2eez_A 18 LTPGGVESLVRRGHTVLVERGAGEGSGLSDAEYARAGAELVGREEAW-GAEMVV-KVKEPLP-EEYGFLREGLILFTYLH 94 (369)
T ss_dssp SCHHHHHHHHHTTCEEEEETTTTGGGTCCHHHHHHHTCEEECHHHHT-TSSEEE-CSSCCCG-GGGGGCCTTCEEEECCC
T ss_pred cCHHHHHHHHhCCCEEEEeCCCCccCCCCHHHHHHCCCEEeccccee-cCCEEE-EECCCCH-HHHhhcCCCcEEEEEec
Confidence 5778888776654 55542 3566666654 45 899866 4445554 44666667899999999
Q ss_pred cccCccChhHHHhCCceee---cCCCC-Ch----HHHHHHHH--HHHHHHHhchHHHHHHHHcCccccccccceeccCCE
Q 007512 130 VGIDNVDLAAATEFGCLVV---NAPTA-NT----VAAAEHGI--ALLAAMARNVAQADASVKAGKWQRNKYVGVSLVGKT 199 (600)
Q Consensus 130 ~G~d~iD~~aa~~~GI~V~---n~p~~-~~----~~vAE~~l--~lll~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gkt 199 (600)
.+.|+.+++++.++||.++ +.+.. .. .++++.+- +.++++ +.+..... .++.|... ..++.+++
T Consensus 95 ~~~~~~~~~~l~~~gi~~ia~e~~~~~~~~~~~l~~~s~~ag~~av~~a~-~~l~~~~~--g~~~~~~~---~~~l~~~~ 168 (369)
T 2eez_A 95 LAADRGLTEAMLRSGVTGIAYETVQLPDGTLPLLVPMSEVAGRMAPQVGA-QFLEKPKG--GRGVLLGG---VPGVAPAS 168 (369)
T ss_dssp GGGCHHHHHHHHHHTCEEEEGGGCCCTTCCCTTTHHHHHHHHHHHHHHHH-HHTSGGGT--SCCCCTTC---BTBBCCCE
T ss_pred ccCCHHHHHHHHHCCCeEEEeeccccccCCeeecccchHHHHHHHHHHHH-HHHHHhcC--CCceecCC---CCCCCCCE
Confidence 9999999999999999998 55442 11 33444333 433332 22222110 01123221 13789999
Q ss_pred EEEEecChhHHHHHHHhhcCCCEEEEECCCCC-hhHHHH-cCCc-------ccCHHHHhccCCEEEEecCCCc-cccccc
Q 007512 200 LAVLGFGKVGSEVARRAKGLGMHVIAHDPYAP-ADRARA-IGVD-------LVSFDEAIATADFISLHMPLTP-ATSKVL 269 (600)
Q Consensus 200 iGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~-~~~a~~-~g~~-------~~~l~ell~~aDvV~l~~Pl~~-~t~~li 269 (600)
++|+|.|.||+.+|+.++++|++|+++|++.. .+.+.+ .|.. ..+++++++++|+|+.|+|... .+..++
T Consensus 169 V~ViGaG~iG~~~a~~l~~~Ga~V~~~d~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~~~~~DvVi~~~g~~~~~~~~li 248 (369)
T 2eez_A 169 VVILGGGTVGTNAAKIALGMGAQVTILDVNHKRLQYLDDVFGGRVITLTATEANIKKSVQHADLLIGAVLVPGAKAPKLV 248 (369)
T ss_dssp EEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTTSEEEEECCHHHHHHHHHHCSEEEECCC-------CCS
T ss_pred EEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHhcCceEEEecCCHHHHHHHHhCCCEEEECCCCCccccchhH
Confidence 99999999999999999999999999998763 233333 4543 2357788899999999999765 577888
Q ss_pred cHhHhccCCCceEEEEccCCccccHHHHHHhHhcCCceEEEEeccCCCCCCCCCccccCCcEE---------EcCCCCCC
Q 007512 270 NDETFGKMKKGVRIINVARGGVIDEEALVRALDSGRVAQAALDVFTEEPPPADSKLVQHERVT---------VTPHLGAS 340 (600)
Q Consensus 270 ~~~~l~~mk~gailvNvarg~ivde~aL~~aL~~g~i~ga~lDv~~~EP~~~~~~L~~~~nvi---------lTPH~~~~ 340 (600)
.++.++.||+|.+|||++.. . +|+ +|++ ||.+.+.|++..+++. .|||.++.
T Consensus 249 ~~~~l~~mk~gg~iV~v~~~-------------~---gg~-~d~~--ep~~~~~~~~~~~~v~~~~v~~lp~~~p~~as~ 309 (369)
T 2eez_A 249 TRDMLSLMKEGAVIVDVAVD-------------Q---GGC-VETI--RPTTHAEPTYVVDGVVHYGVANMPGAVPRTSTF 309 (369)
T ss_dssp CHHHHTTSCTTCEEEECC--------------------------------------CEETTEEEECCSCSGGGSHHHHHH
T ss_pred HHHHHHhhcCCCEEEEEecC-------------C---CCC-CCcc--cCCCCCCCEEEECCEEEEeeCCcchhcHHHHHH
Confidence 99999999999999999821 1 244 8988 6655678899889998 78998764
Q ss_pred --cHHHHHHHHHHHHHHHHHHHcCCCCCcccc
Q 007512 341 --TMEAQEGVAIEIAEAVVGALKGELAATAVN 370 (600)
Q Consensus 341 --t~ea~~~~~~~~~~~l~~~l~g~~~~~~vn 370 (600)
+.+....+...+.+++..++.+....+.+|
T Consensus 310 ~~~~~~~~~l~~l~~~g~~~~~~~~~l~~~~~ 341 (369)
T 2eez_A 310 ALTNQTLPYVLKLAEKGLDALLEDAALLKGLN 341 (369)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHHSCHHHHTTEE
T ss_pred HHHHHHHHHHHHHHhcChhhhhcChHHhcCEE
Confidence 455566666666677755666655555555
|
| >1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=4.1e-18 Score=183.46 Aligned_cols=220 Identities=15% Similarity=0.186 Sum_probs=154.7
Q ss_pred CCHhHHHHhcccC-cEEEc------cCCCHhHHhhh---------cCCceEEEEcCCCCCCHHHHhccCCCceEEEEcCc
Q 007512 67 LGQAGLDLLNEFA-NVDCA------YNLSPEELCTK---------ISLCDALIVRSGTKVNRDVFESSAGRLKVVGRAGV 130 (600)
Q Consensus 67 l~~~~~~~l~~~~-~v~~~------~~~~~~el~~~---------i~~~d~li~~~~~~~~~~~l~~~~~~Lk~I~~~g~ 130 (600)
+.|+..+.|...+ +|.+. ..++.++..+. +-++|+++.. .. .+.+.++.+++++++|+..+.
T Consensus 25 ltP~~v~~L~~~G~~V~ve~~ag~~~gf~d~~y~~aGa~i~~~~~~~~adiil~v-k~-p~~~~i~~l~~~~~li~~~~~ 102 (401)
T 1x13_A 25 ATPKTVEQLLKLGFTVAVESGAGQLASFDDKAFVQAGAEIVEGNSVWQSEIILKV-NA-PLDDEIALLNPGTTLVSFIWP 102 (401)
T ss_dssp CCHHHHHHHHHTTCEEEEETTTTGGGTCCHHHHHHHTCEEECGGGGGSSSEEECS-SC-CCHHHHTTCCTTCEEEECCCG
T ss_pred CCHHHHHHHHHCCCEEEEEECCCcccCCChHHHHHCCCEEeccHHHhcCCeEEEe-CC-CCHHHHHHhcCCCcEEEEecC
Confidence 4666666665543 44442 34555554421 3338987743 23 356778877679999999999
Q ss_pred ccCccChhHHHhCCceeecCCCCChHHHHHHHHHHHHHHHhchHHH--HHHHHcCcccccc-ccce-----eccCCEEEE
Q 007512 131 GIDNVDLAAATEFGCLVVNAPTANTVAAAEHGIALLAAMARNVAQA--DASVKAGKWQRNK-YVGV-----SLVGKTLAV 202 (600)
Q Consensus 131 G~d~iD~~aa~~~GI~V~n~p~~~~~~vAE~~l~lll~~~R~i~~~--~~~~~~g~W~~~~-~~g~-----~l~gktiGI 202 (600)
|+|++|++++.++||.|++ .++++|++.++.|.+++.+... +..++.+.|.... +.+. ++.|++|+|
T Consensus 103 ~~d~~~~~al~~~gI~v~~-----~e~v~~~~~a~~l~~l~~~a~~ag~~av~~~~~~~~~~~~~~~~~~g~l~g~~V~V 177 (401)
T 1x13_A 103 AQNPELMQKLAERNVTVMA-----MDSVPRISRAQSLDALSSMANIAGYRAIVEAAHEFGRFFTGQITAAGKVPPAKVMV 177 (401)
T ss_dssp GGCHHHHHHHHHTTCEEEE-----GGGCCCSGGGGGGCHHHHHHHHHHHHHHHHHHHHCSSCSSCEEETTEEECCCEEEE
T ss_pred CCCHHHHHHHHHCCCEEEE-----eehhhhhhhhcccchHHHHHHHHHHHHHHHHHHhcccccCCceeeccCcCCCEEEE
Confidence 9999999999999999964 4556666655533222222221 2333333332111 1111 688999999
Q ss_pred EecChhHHHHHHHhhcCCCEEEEECCCC-ChhHHHHcCCccc----------------------------CHHHHhccCC
Q 007512 203 LGFGKVGSEVARRAKGLGMHVIAHDPYA-PADRARAIGVDLV----------------------------SFDEAIATAD 253 (600)
Q Consensus 203 IGlG~IG~~vA~~l~~~g~~V~~~d~~~-~~~~a~~~g~~~~----------------------------~l~ell~~aD 253 (600)
+|+|.||..+++.++++|++|+++|++. ..+.+.+.|...+ +++++++.+|
T Consensus 178 iGaG~iG~~aa~~a~~~Ga~V~v~D~~~~~~~~~~~lGa~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~e~~~~aD 257 (401)
T 1x13_A 178 IGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSMGAEFLELDFKEEAGSGDGYAKVMSDAFIKAEMELFAAQAKEVD 257 (401)
T ss_dssp ECCSHHHHHHHHHHHHTTCEEEEECSCGGGHHHHHHTTCEECCC--------CCHHHHHHSHHHHHHHHHHHHHHHHHCS
T ss_pred ECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHcCCEEEEecccccccccccchhhccHHHHHHHHHHHHHHhCCCC
Confidence 9999999999999999999999999987 3455667776543 2678888999
Q ss_pred EEEEe--cCCCccccccccHhHhccCCCceEEEEcc--CCccccH
Q 007512 254 FISLH--MPLTPATSKVLNDETFGKMKKGVRIINVA--RGGVIDE 294 (600)
Q Consensus 254 vV~l~--~Pl~~~t~~li~~~~l~~mk~gailvNva--rg~ivde 294 (600)
+|+.| +|. ..+..+++++.++.||+|++|||++ ||+.+++
T Consensus 258 vVI~~~~~pg-~~ap~li~~~~l~~mk~g~vIVdva~~~Gg~v~~ 301 (401)
T 1x13_A 258 IIVTTALIPG-KPAPKLITREMVDSMKAGSVIVDLAAQNGGNCEY 301 (401)
T ss_dssp EEEECCCCTT-SCCCCCBCHHHHHTSCTTCEEEETTGGGTCSBTT
T ss_pred EEEECCccCC-CCCCeeeCHHHHhcCCCCcEEEEEcCCCCCCcCc
Confidence 99999 553 3466889999999999999999999 8887654
|
| >1gtm_A Glutamate dehydrogenase; oxidoreductase, NAD, NADP; 2.20A {Pyrococcus furiosus} SCOP: c.2.1.7 c.58.1.1 PDB: 1bvu_A 1euz_A | Back alignment and structure |
|---|
Probab=99.75 E-value=2.2e-19 Score=193.69 Aligned_cols=155 Identities=21% Similarity=0.327 Sum_probs=123.7
Q ss_pred ccee-ccCCEEEEEecChhHHHHHHHhhc-CCCEEEEE-CCCCChhHHHHcCCcccCHHHHhccCCE-EEEecCCCcccc
Q 007512 191 VGVS-LVGKTLAVLGFGKVGSEVARRAKG-LGMHVIAH-DPYAPADRARAIGVDLVSFDEAIATADF-ISLHMPLTPATS 266 (600)
Q Consensus 191 ~g~~-l~gktiGIIGlG~IG~~vA~~l~~-~g~~V~~~-d~~~~~~~a~~~g~~~~~l~ell~~aDv-V~l~~Pl~~~t~ 266 (600)
.|.+ |.|||+||+|+|+||+.+|+++++ |||+|++| |++... .+...++++++++.+|. .++ +|+ ++|+
T Consensus 205 ~G~~~l~gktvgI~G~G~VG~~vA~~l~~~~G~kVv~~sD~~g~~-----~~~~gvdl~~L~~~~d~~~~l-~~l-~~t~ 277 (419)
T 1gtm_A 205 LGWDTLKGKTIAIQGYGNAGYYLAKIMSEDFGMKVVAVSDSKGGI-----YNPDGLNADEVLKWKNEHGSV-KDF-PGAT 277 (419)
T ss_dssp TTCSCSTTCEEEEECCSHHHHHHHHHHHHTTCCEEEEEECSSCEE-----EEEEEECHHHHHHHHHHHSSS-TTC-TTSE
T ss_pred hCCcccCCCEEEEEcCCHHHHHHHHHHHHhcCCEEEEEeCCCccc-----cCccCCCHHHHHHHHHhcCEe-ecC-ccCe
Confidence 3667 999999999999999999999999 99999999 555311 11123367777765553 233 576 5788
Q ss_pred ccccHhHhccCCCceEEEEccCCccccHHHHHHhHhcCCceEEEEeccCCCCCCCC-CccccCCcEEEcCCC----C---
Q 007512 267 KVLNDETFGKMKKGVRIINVARGGVIDEEALVRALDSGRVAQAALDVFTEEPPPAD-SKLVQHERVTVTPHL----G--- 338 (600)
Q Consensus 267 ~li~~~~l~~mk~gailvNvarg~ivde~aL~~aL~~g~i~ga~lDv~~~EP~~~~-~~L~~~~nvilTPH~----~--- 338 (600)
+ ++.+.|..||+ .++|||+||.++|+++ +++|+.+.|++++ +||++.+ ++||..+|+++|||+ |
T Consensus 278 ~-i~~~~l~~mk~-dilIn~ArG~~Vde~a-~~aL~~~~I~~aA-----neP~t~~a~~ll~~~~V~itPhiaaNaGGvt 349 (419)
T 1gtm_A 278 N-ITNEELLELEV-DVLAPAAIEEVITKKN-ADNIKAKIVAEVA-----NGPVTPEADEILFEKGILQIPDFLCNAGGVT 349 (419)
T ss_dssp E-ECHHHHHHSCC-SEEEECSCSCCBCTTG-GGGCCCSEEECCS-----SSCBCHHHHHHHHHTTCEEECHHHHTTHHHH
T ss_pred e-eCHHHHHhCCC-CEEEECCCcccCCHHH-HHHhcCCEEEEee-----CCCCCcchHHHHhcCCEEEECchhhhCCcce
Confidence 8 78888999998 5999999999999999 6899999999887 8987644 689999999999999 6
Q ss_pred --------------CCcHHHHHHHHHHHHHHHHHHH
Q 007512 339 --------------ASTMEAQEGVAIEIAEAVVGAL 360 (600)
Q Consensus 339 --------------~~t~ea~~~~~~~~~~~l~~~l 360 (600)
+.+.|.++++...+.+++.+++
T Consensus 350 ~s~~E~~qn~~~~~w~~~ev~~~l~~~m~~~~~~~~ 385 (419)
T 1gtm_A 350 VSYFEWVQNITGYYWTIEEVRERLDKKMTKAFYDVY 385 (419)
T ss_dssp HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred eeeehhhhcccccccCHHHHHHHHHHHHHHHHHHHH
Confidence 5667777777776677777766
|
| >3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=8.8e-19 Score=182.76 Aligned_cols=249 Identities=15% Similarity=0.117 Sum_probs=176.9
Q ss_pred eccCCEEEEEecChhHHHHHHHhhcCCC--EEEEECCCC-ChhHHHHcCCc---ccCHHH-HhccCCEEEEecCCCcccc
Q 007512 194 SLVGKTLAVLGFGKVGSEVARRAKGLGM--HVIAHDPYA-PADRARAIGVD---LVSFDE-AIATADFISLHMPLTPATS 266 (600)
Q Consensus 194 ~l~gktiGIIGlG~IG~~vA~~l~~~g~--~V~~~d~~~-~~~~a~~~g~~---~~~l~e-ll~~aDvV~l~~Pl~~~t~ 266 (600)
++..++|||||+|.||+++|+.|+..|+ +|++||++. ..+.+.+.|+. ..++++ ++++||+|++|+|... +.
T Consensus 30 ~~~~~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~~~G~~~~~~~~~~~~~~~~aDvVilavp~~~-~~ 108 (314)
T 3ggo_A 30 SLSMQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLSSPVRT-FR 108 (314)
T ss_dssp CCSCSEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCTTGGGGGCCSEEEECSCGGG-HH
T ss_pred hcCCCEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHCCCcchhcCCHHHHhhccCCEEEEeCCHHH-HH
Confidence 4556899999999999999999999998 999999987 45566777772 347888 8999999999999553 44
Q ss_pred ccccHhHhccCCCceEEEEccCCccccHHHHHHhHhcCCceEEEEeccCCC---CCCCCCccccCCcEEEcCCCCCCcHH
Q 007512 267 KVLNDETFGKMKKGVRIINVARGGVIDEEALVRALDSGRVAQAALDVFTEE---PPPADSKLVQHERVTVTPHLGASTME 343 (600)
Q Consensus 267 ~li~~~~l~~mk~gailvNvarg~ivde~aL~~aL~~g~i~ga~lDv~~~E---P~~~~~~L~~~~nvilTPH~~~~t~e 343 (600)
.++ ++....++++++|+|+++.+....+++.+.+....+.+.- +++.| |..+...||+...+++||+-++. .+
T Consensus 109 ~vl-~~l~~~l~~~~iv~d~~Svk~~~~~~~~~~l~~~~v~~hP--m~G~e~sG~~~A~~~Lf~g~~~il~~~~~~~-~~ 184 (314)
T 3ggo_A 109 EIA-KKLSYILSEDATVTDQGSVKGKLVYDLENILGKRFVGGHP--IAGTEKSGVEYSLDNLYEGKKVILTPTKKTD-KK 184 (314)
T ss_dssp HHH-HHHHHHSCTTCEEEECCSCCTHHHHHHHHHHGGGEECEEE--CCCCCCCSGGGCCTTTTTTCEEEECCCTTSC-HH
T ss_pred HHH-HHHhhccCCCcEEEECCCCcHHHHHHHHHhcCCCEEecCc--ccCCcccchhhhhhhhhcCCEEEEEeCCCCC-HH
Confidence 444 4455669999999999987654455666656553343322 23332 22456689999999999985433 33
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCccccCCCCChhhhhccc--chHHHHHHHHHHH---------HHHhcCCCCceEEEEE
Q 007512 344 AQEGVAIEIAEAVVGALKGELAATAVNAPMVPAEVLTELK--PFVELAEKLGRLA---------VQLVAGGSGVKTVKVS 412 (600)
Q Consensus 344 a~~~~~~~~~~~l~~~l~g~~~~~~vn~~~i~~~~~~~~~--p~~~la~~lG~l~---------~qL~~g~~~~k~v~i~ 412 (600)
.. +.+.++++..+....+..+..++..+..++ ||+.....+..+. .+++++ +|++++++
T Consensus 185 ~~--------~~v~~l~~~~G~~v~~~~~~~hD~~~a~~s~lph~~a~~l~~~~~~~~~~~~~~~~~a~~--~frd~tRi 254 (314)
T 3ggo_A 185 RL--------KLVKRVWEDVGGVVEYMSPELHDYVFGVVSHLPHAVAFALVDTLIHMSTPEVDLFKYPGG--GFKDFTRI 254 (314)
T ss_dssp HH--------HHHHHHHHHTTCEEEECCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCCSSCCGGGCCTT--TTTTHHHH
T ss_pred HH--------HHHHHHHHHcCCEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHhhccc--cHHHHHHH
Confidence 33 444555554444444445556666676666 7775444444332 246667 89999999
Q ss_pred EeecCCCCccccccccHHHHHhhchhhhccchhhccHHHHHhhcCc
Q 007512 413 YASSRAPDDLDTRLLRAMITKGLIEPISDVFVNLVNADYTAKQRGL 458 (600)
Q Consensus 413 ~~Gs~a~~~~~~~~~~~a~l~GlL~~~~~~~vn~vnA~~~A~e~GI 458 (600)
+.+++. +|.++...|+..+...|+.+..+...+.++..-.+..++
T Consensus 255 a~~~p~-~w~di~~~N~~~~~~~l~~~~~~l~~l~~~l~~~d~~~l 299 (314)
T 3ggo_A 255 AKSDPI-MWRDIFLENKENVMKAIEGFEKSLNHLKELIVREAEEEL 299 (314)
T ss_dssp TTSCHH-HHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHTCSHHH
T ss_pred hcCCHH-HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 999998 999999999998888898888876777777665444333
|
| >1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=4.9e-17 Score=174.09 Aligned_cols=221 Identities=17% Similarity=0.204 Sum_probs=154.2
Q ss_pred CCHhHHHHhcccC-cEEEc------cCCCHhHHh-----------hhcCCceEEEEcCCCCC----CHHHHhccCCCceE
Q 007512 67 LGQAGLDLLNEFA-NVDCA------YNLSPEELC-----------TKISLCDALIVRSGTKV----NRDVFESSAGRLKV 124 (600)
Q Consensus 67 l~~~~~~~l~~~~-~v~~~------~~~~~~el~-----------~~i~~~d~li~~~~~~~----~~~~l~~~~~~Lk~ 124 (600)
+.|+..+.|.+.+ +|.+. ..++.++.. +.+.++|+++.. ..++ +++.++.+++++++
T Consensus 18 l~P~~v~~L~~~G~~V~ve~~ag~~~~~~d~~y~~aGa~i~~~~~~~~~~adiil~v-~~p~~~~~~~~~i~~l~~~~~~ 96 (384)
T 1l7d_A 18 ISPEVVKKLVGLGFEVIVEQGAGVGASITDDALTAAGATIASTAAQALSQADVVWKV-QRPMTAEEGTDEVALIKEGAVL 96 (384)
T ss_dssp CCHHHHHHHHHTTCEEEEETTTTGGGTCCHHHHHHTTCEEESSHHHHHSSCSEEEEE-ECCCCGGGSCCGGGGSCTTCEE
T ss_pred CCHHHHHHHHhCCCEEEEEcCCCccCCCCHHHHHHCCCEEecChhhhhcCCCEEEEe-cCcccccCCHHHHHhhccCCEE
Confidence 5677777776554 44441 345555544 346789998865 3455 68888888768999
Q ss_pred EEEcCcccCccChhHHHhCCceeecCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCccccccc-----cc-eeccCC
Q 007512 125 VGRAGVGIDNVDLAAATEFGCLVVNAPTANTVAAAEHGIALLAAMARNVAQADASVKAGKWQRNKY-----VG-VSLVGK 198 (600)
Q Consensus 125 I~~~g~G~d~iD~~aa~~~GI~V~n~p~~~~~~vAE~~l~lll~~~R~i~~~~~~~~~g~W~~~~~-----~g-~~l~gk 198 (600)
|+..+.+.|+.|++++.++||.++|.. .....+++..+. +|+..+.+ ..+..+..+.|.-..+ .+ .++.|+
T Consensus 97 i~~~~~~~~~~~~~~~~~~gi~~~~~e-~~~~~~~~~~l~-~l~~~a~~-ag~~av~~~~~~~~~~~~~~~~~~~~l~g~ 173 (384)
T 1l7d_A 97 MCHLGALTNRPVVEALTKRKITAYAME-LMPRISRAQSMD-ILSSQSNL-AGYRAVIDGAYEFARAFPMMMTAAGTVPPA 173 (384)
T ss_dssp EEECCGGGCHHHHHHHHHTTCEEEEGG-GCCCSGGGGGGC-HHHHHHHH-HHHHHHHHHHHHCSSCSSCEEETTEEECCC
T ss_pred EEEecccCCHHHHHHHHHCCCEEEEec-cccccccccccc-hhhHHHHH-HHHHHHHHHHHHhhhcccchhccCCCCCCC
Confidence 999999999999999999999999742 111112222333 22222222 2223333333421111 12 478999
Q ss_pred EEEEEecChhHHHHHHHhhcCCCEEEEECCCC-ChhHHHHcCCccc---C---------------------------HHH
Q 007512 199 TLAVLGFGKVGSEVARRAKGLGMHVIAHDPYA-PADRARAIGVDLV---S---------------------------FDE 247 (600)
Q Consensus 199 tiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~-~~~~a~~~g~~~~---~---------------------------l~e 247 (600)
+++|+|.|.||..+++.++++|++|+++|++. ..+.+.++|...+ . +++
T Consensus 174 ~V~ViGaG~iG~~aa~~a~~~Ga~V~~~d~~~~~~~~~~~~Ga~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~~~~l~~ 253 (384)
T 1l7d_A 174 RVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQAEAVLK 253 (384)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHHHTTCEECCC-----------------------CCHHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEeecccccccccccccchhhcCHHHHhhhHHHHHH
Confidence 99999999999999999999999999999987 4456667776543 1 778
Q ss_pred HhccCCEEEEec--CCCccccccccHhHhccCCCceEEEEcc--CCccc
Q 007512 248 AIATADFISLHM--PLTPATSKVLNDETFGKMKKGVRIINVA--RGGVI 292 (600)
Q Consensus 248 ll~~aDvV~l~~--Pl~~~t~~li~~~~l~~mk~gailvNva--rg~iv 292 (600)
+++.+|+|+.|+ |.. .+.++++++.++.||+|++|+|++ ||+.+
T Consensus 254 ~~~~aDvVi~~~~~pg~-~~~~li~~~~l~~mk~g~vivdva~~~gg~~ 301 (384)
T 1l7d_A 254 ELVKTDIAITTALIPGK-PAPVLITEEMVTKMKPGSVIIDLAVEAGGNC 301 (384)
T ss_dssp HHTTCSEEEECCCCTTS-CCCCCSCHHHHTTSCTTCEEEETTGGGTCSS
T ss_pred HhCCCCEEEECCccCCC-CCCeeeCHHHHhcCCCCCEEEEEecCCCCCe
Confidence 889999999888 433 256788999999999999999999 76643
|
| >3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=3.7e-17 Score=175.67 Aligned_cols=211 Identities=17% Similarity=0.253 Sum_probs=147.7
Q ss_pred hHHHHhcccC-cEEEccCCCHhHHh----hhc------CCceEEEEcCCCCCCHHHHhccC---CCceEEE-EcCcccCc
Q 007512 70 AGLDLLNEFA-NVDCAYNLSPEELC----TKI------SLCDALIVRSGTKVNRDVFESSA---GRLKVVG-RAGVGIDN 134 (600)
Q Consensus 70 ~~~~~l~~~~-~v~~~~~~~~~el~----~~i------~~~d~li~~~~~~~~~~~l~~~~---~~Lk~I~-~~g~G~d~ 134 (600)
.....|.+.+ .|.-....+.||.. +.+ ...|.++ .-+..++.-+-...+ ++++-+. -.++|+..
T Consensus 83 ~~aaal~~~gi~v~a~~ge~~~ey~~~~~~~l~~~~~~~~p~~il-DdGgdl~~~~h~~~~~~~~~i~G~~EeTttGv~r 161 (436)
T 3h9u_A 83 HAAAAIAKRGIPVFAWKGETEEEYMWCMKQTLKGFSGDGYPNMLL-DDGGDLTNYVLDECKELDGKIYGVSEETTTGVKN 161 (436)
T ss_dssp HHHHHHHHTTCCEEECTTCCHHHHHHHHHHTTSCBTTTBCCSEEE-ESSSHHHHHHHHHC-CCTTTCCCEEECSHHHHHH
T ss_pred HHHHHHHhcCCeEEEeCCCCHHHHHHHHHHHHHhcccCCCCceEe-ccccHHHHHHHHHhHHHHhhccceeeccCcChHH
Confidence 3344454443 44333445665542 223 1345444 444445544433321 2344443 35778766
Q ss_pred cC-hhHHHhCCceeecCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCccccccccceeccCCEEEEEecChhHHHHH
Q 007512 135 VD-LAAATEFGCLVVNAPTANTVAAAEHGIALLAAMARNVAQADASVKAGKWQRNKYVGVSLVGKTLAVLGFGKVGSEVA 213 (600)
Q Consensus 135 iD-~~aa~~~GI~V~n~p~~~~~~vAE~~l~lll~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktiGIIGlG~IG~~vA 213 (600)
.. +.++.+.+|+|+|++.+.+....+...+..-++.+.+.. ..+.++.||++||+|+|.||+.+|
T Consensus 162 L~~~~~~g~L~iPVinvndsvtk~~~Dn~~Gt~~slldgi~r--------------atg~~L~GktVgIiG~G~IG~~vA 227 (436)
T 3h9u_A 162 LYKRLQRGKLTIPAMNVNDSVTKSKFDNLYGCRESLVDGIKR--------------ATDVMIAGKTACVCGYGDVGKGCA 227 (436)
T ss_dssp HHHHHHHTCCCSCEEECTTSHHHHTTHHHHHHHHHHHHHHHH--------------HHCCCCTTCEEEEECCSHHHHHHH
T ss_pred HHHHHHcCCCCCceEeechhhhhhhhhccccchHHHHHHHHH--------------hcCCcccCCEEEEEeeCHHHHHHH
Confidence 54 456678999999999877766555444433333222211 136789999999999999999999
Q ss_pred HHhhcCCCEEEEECCCC-ChhHHHHcCCcccCHHHHhccCCEEEEecCCCccccccccHhHhccCCCceEEEEccCCcc-
Q 007512 214 RRAKGLGMHVIAHDPYA-PADRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGV- 291 (600)
Q Consensus 214 ~~l~~~g~~V~~~d~~~-~~~~a~~~g~~~~~l~ell~~aDvV~l~~Pl~~~t~~li~~~~l~~mk~gailvNvarg~i- 291 (600)
++|++||++|++||+++ ....+...|+..+++++++++||+|++ ++.|+++++++.|+.||+|++|+|+|||.+
T Consensus 228 ~~Lka~Ga~Viv~D~~p~~a~~A~~~G~~~~sL~eal~~ADVVil----t~gt~~iI~~e~l~~MK~gAIVINvgRg~vE 303 (436)
T 3h9u_A 228 AALRGFGARVVVTEVDPINALQAAMEGYQVLLVEDVVEEAHIFVT----TTGNDDIITSEHFPRMRDDAIVCNIGHFDTE 303 (436)
T ss_dssp HHHHHTTCEEEEECSCHHHHHHHHHTTCEECCHHHHTTTCSEEEE----CSSCSCSBCTTTGGGCCTTEEEEECSSSGGG
T ss_pred HHHHHCCCEEEEECCChhhhHHHHHhCCeecCHHHHHhhCCEEEE----CCCCcCccCHHHHhhcCCCcEEEEeCCCCCc
Confidence 99999999999999986 334566788888899999999999997 345889999999999999999999999997
Q ss_pred ccHHHHHH
Q 007512 292 IDEEALVR 299 (600)
Q Consensus 292 vde~aL~~ 299 (600)
+|.++|.+
T Consensus 304 ID~~~L~~ 311 (436)
T 3h9u_A 304 IQVAWLKA 311 (436)
T ss_dssp BCHHHHHH
T ss_pred cCHHHHHh
Confidence 89998865
|
| >3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.5e-18 Score=182.77 Aligned_cols=256 Identities=12% Similarity=0.052 Sum_probs=174.9
Q ss_pred CCEEEEEecChhHHHHHHHhhcCCCEEEEECCCC-ChhHHHHcCCcc-cCHHHHhcc----CCEEEEecCCCcccccccc
Q 007512 197 GKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYA-PADRARAIGVDL-VSFDEAIAT----ADFISLHMPLTPATSKVLN 270 (600)
Q Consensus 197 gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~-~~~~a~~~g~~~-~~l~ell~~----aDvV~l~~Pl~~~t~~li~ 270 (600)
-++|||||+|+||+++|+.|+..|++|++||++. ..+.+.+.|+.. .++++++++ ||+|++|+|. ..+..++.
T Consensus 8 ~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~~~~~a~~~G~~~~~~~~e~~~~a~~~aDlVilavP~-~~~~~vl~ 86 (341)
T 3ktd_A 8 SRPVCILGLGLIGGSLLRDLHAANHSVFGYNRSRSGAKSAVDEGFDVSADLEATLQRAAAEDALIVLAVPM-TAIDSLLD 86 (341)
T ss_dssp SSCEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHTTCCEESCHHHHHHHHHHTTCEEEECSCH-HHHHHHHH
T ss_pred CCEEEEEeecHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeeeCCHHHHHHhcccCCCEEEEeCCH-HHHHHHHH
Confidence 3589999999999999999999999999999886 456677788864 478887765 6999999994 45666663
Q ss_pred HhHhccCCCceEEEEccCCccccHHHHHHhHhc-CCceEEEEeccCCC---CCCCCCccccCCcEEEcCCCCCCcHHHHH
Q 007512 271 DETFGKMKKGVRIINVARGGVIDEEALVRALDS-GRVAQAALDVFTEE---PPPADSKLVQHERVTVTPHLGASTMEAQE 346 (600)
Q Consensus 271 ~~~l~~mk~gailvNvarg~ivde~aL~~aL~~-g~i~ga~lDv~~~E---P~~~~~~L~~~~nvilTPH~~~~t~ea~~ 346 (600)
.+..++++++|+|++..+....+++.+.+.. ..+.+.- +++.| |..++..||+..++++||+-+... +...
T Consensus 87 --~l~~~~~~~iv~Dv~Svk~~i~~~~~~~~~~~~~v~~HP--maG~e~sG~~aa~~~Lf~g~~~iltp~~~~~~-e~~~ 161 (341)
T 3ktd_A 87 --AVHTHAPNNGFTDVVSVKTAVYDAVKARNMQHRYVGSHP--MAGTANSGWSASMDGLFKRAVWVVTFDQLFDG-TDIN 161 (341)
T ss_dssp --HHHHHCTTCCEEECCSCSHHHHHHHHHTTCGGGEECEEE--CCSCC-CCGGGCCSSTTTTCEEEECCGGGTSS-CCCC
T ss_pred --HHHccCCCCEEEEcCCCChHHHHHHHHhCCCCcEecCCc--cccccccchhhhhhHHhcCCeEEEEeCCCCCh-hhhc
Confidence 2344689999999987665334444444432 2332221 23322 224567899999999999854332 2000
Q ss_pred HHHHHHHHHHHHHHcCCCCCccccCCCCChhhhhccc--chHHHHHHHHH------HHHHHhcCCCCceEEEEEEeecCC
Q 007512 347 GVAIEIAEAVVGALKGELAATAVNAPMVPAEVLTELK--PFVELAEKLGR------LAVQLVAGGSGVKTVKVSYASSRA 418 (600)
Q Consensus 347 ~~~~~~~~~l~~~l~g~~~~~~vn~~~i~~~~~~~~~--p~~~la~~lG~------l~~qL~~g~~~~k~v~i~~~Gs~a 418 (600)
.-+....+.+..+++..+.......+..++..+..++ ||+.....+.. .+.+|+++ +|+++++++.+++.
T Consensus 162 ~~~~~~~~~v~~l~~~~Ga~v~~~~~~~HD~~~A~vshlPh~ia~aL~~~~~~~~~~~~~laa~--gfrd~tRia~s~p~ 239 (341)
T 3ktd_A 162 STWISIWKDVVQMALAVGAEVVPSRVGPHDAAAARVSHLTHILAETLAIVGDNGGALSLSLAAG--SYRDSTRVAGTDPG 239 (341)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEECCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTHHHHHHHCCH--HHHHHTGGGGSCHH
T ss_pred cchHHHHHHHHHHHHHcCCEEEEeCHHHHHHHHHHHhHHHHHHHHHHHHHhhcchHHHHHHccc--cHHHHHHHhcCCHH
Confidence 0011234556666655554445555666777777776 87655443332 34568787 89999999999998
Q ss_pred CCccccccccHHHHHhhchhhhccchhhccHHHHHhhcCceEEE
Q 007512 419 PDDLDTRLLRAMITKGLIEPISDVFVNLVNADYTAKQRGLRLTE 462 (600)
Q Consensus 419 ~~~~~~~~~~~a~l~GlL~~~~~~~vn~vnA~~~A~e~GI~v~~ 462 (600)
+|.++...|+..+...|+.+.++...+.++..-.+ .++.-.|
T Consensus 240 -lw~di~~~N~~~~~~~l~~~~~~L~~l~~~l~~~d-~~l~~~~ 281 (341)
T 3ktd_A 240 -LVRAMCESNAGPLVKALDEALAILHEAREGLTAEQ-PNIEQLA 281 (341)
T ss_dssp -HHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTSSS-CCCHHHH
T ss_pred -HHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHccc-HHHHHHH
Confidence 99999999998888888888887666666665444 4444333
|
| >3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=99.67 E-value=2e-16 Score=169.77 Aligned_cols=159 Identities=22% Similarity=0.251 Sum_probs=118.9
Q ss_pred ceEEE-EcCcccCccC-hhHHHhCCceeecCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCccccccccceeccCCE
Q 007512 122 LKVVG-RAGVGIDNVD-LAAATEFGCLVVNAPTANTVAAAEHGIALLAAMARNVAQADASVKAGKWQRNKYVGVSLVGKT 199 (600)
Q Consensus 122 Lk~I~-~~g~G~d~iD-~~aa~~~GI~V~n~p~~~~~~vAE~~l~lll~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gkt 199 (600)
++-+. -.++|+-++- +...-+..++++|+..+.+.+--+ ....+.+.+..+.. ...+.++.|||
T Consensus 184 i~G~~EeTtTGv~rL~~m~~~g~L~~PvinVnds~tK~~fD----n~yG~~eslvdgI~----------Ratg~~L~GKT 249 (464)
T 3n58_A 184 IKGVTEETTTGVNRLYQLQKKGLLPFPAINVNDSVTKSKFD----NKYGCKESLVDGIR----------RGTDVMMAGKV 249 (464)
T ss_dssp CCEEEECSHHHHHHHHHHHHHTCCCSCEEECTTSHHHHTTH----HHHHHHHHHHHHHH----------HHHCCCCTTCE
T ss_pred ccceeeccccchHHHHHHHHcCCCCCCEEeeccHhhhhhhh----hhhcchHHHHHHHH----------HhcCCcccCCE
Confidence 44443 3577776642 233345678888887655544333 22222222222111 12467999999
Q ss_pred EEEEecChhHHHHHHHhhcCCCEEEEECCCC-ChhHHHHcCCcccCHHHHhccCCEEEEecCCCccccccccHhHhccCC
Q 007512 200 LAVLGFGKVGSEVARRAKGLGMHVIAHDPYA-PADRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVLNDETFGKMK 278 (600)
Q Consensus 200 iGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~-~~~~a~~~g~~~~~l~ell~~aDvV~l~~Pl~~~t~~li~~~~l~~mk 278 (600)
+||+|+|.||+.+|+++++|||+|+++|+++ ....+...|++.+++++++++||+|+++. .|+++|+++.|+.||
T Consensus 250 VgVIG~G~IGr~vA~~lrafGa~Viv~d~dp~~a~~A~~~G~~vv~LeElL~~ADIVv~at----gt~~lI~~e~l~~MK 325 (464)
T 3n58_A 250 AVVCGYGDVGKGSAQSLAGAGARVKVTEVDPICALQAAMDGFEVVTLDDAASTADIVVTTT----GNKDVITIDHMRKMK 325 (464)
T ss_dssp EEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHTTCEECCHHHHGGGCSEEEECC----SSSSSBCHHHHHHSC
T ss_pred EEEECcCHHHHHHHHHHHHCCCEEEEEeCCcchhhHHHhcCceeccHHHHHhhCCEEEECC----CCccccCHHHHhcCC
Confidence 9999999999999999999999999998865 23445667888889999999999999864 378999999999999
Q ss_pred CceEEEEccCCcc-ccHHHHH
Q 007512 279 KGVRIINVARGGV-IDEEALV 298 (600)
Q Consensus 279 ~gailvNvarg~i-vde~aL~ 298 (600)
+|++|||+|||.+ +|.++|.
T Consensus 326 ~GAILINvGRgdvEID~~aL~ 346 (464)
T 3n58_A 326 DMCIVGNIGHFDNEIQVAALR 346 (464)
T ss_dssp TTEEEEECSSSTTTBTCGGGT
T ss_pred CCeEEEEcCCCCcccCHHHHH
Confidence 9999999999998 8888875
|
| >1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1 | Back alignment and structure |
|---|
Probab=99.61 E-value=3.1e-17 Score=176.74 Aligned_cols=210 Identities=17% Similarity=0.177 Sum_probs=162.7
Q ss_pred CCceEEEEcCcccCccChhHHH-----hCCceeecCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCccccc----cc
Q 007512 120 GRLKVVGRAGVGIDNVDLAAAT-----EFGCLVVNAPTANTVAAAEHGIALLAAMARNVAQADASVKAGKWQRN----KY 190 (600)
Q Consensus 120 ~~Lk~I~~~g~G~d~iD~~aa~-----~~GI~V~n~p~~~~~~vAE~~l~lll~~~R~i~~~~~~~~~g~W~~~----~~ 190 (600)
+.+++|.+.|+|+|++++.++. ++++.++|.+|+ ...++++.+.+++.+.|++....... .+.|... ..
T Consensus 80 ~a~~~i~~v~~Glds~~vGe~~Il~qvk~~~~~~~~~G~-~~~~~~~~~~~a~~~~k~v~~~~~~~-~~~~s~a~~av~~ 157 (404)
T 1gpj_A 80 EAVRHLFRVASGLESMMVGEQEILRQVKKAYDRAARLGT-LDEALKIVFRRAINLGKRAREETRIS-EGAVSIGSAAVEL 157 (404)
T ss_dssp HHHHHHHHHHTTTTSSSTTCHHHHHHHHHHHHHHHHHTC-CCHHHHHHHHHHHHHHHHHHHHSSTT-CSCCSHHHHHHHH
T ss_pred hHhhhheeeccCCCCCcCCcchhHHHHHHHHHHHHHcCC-chHHHHHHHHHHhhhhccCcchhhhc-CCCccHHHHHHHH
Confidence 3688999999999999999888 899999999888 57899999999999999987765333 4455321 00
Q ss_pred cc---eeccCCEEEEEecChhHHHHHHHhhcCCC-EEEEECCCCCh--hHHHHcCCcc---cCHHHHhccCCEEEEecCC
Q 007512 191 VG---VSLVGKTLAVLGFGKVGSEVARRAKGLGM-HVIAHDPYAPA--DRARAIGVDL---VSFDEAIATADFISLHMPL 261 (600)
Q Consensus 191 ~g---~~l~gktiGIIGlG~IG~~vA~~l~~~g~-~V~~~d~~~~~--~~a~~~g~~~---~~l~ell~~aDvV~l~~Pl 261 (600)
.+ .++.|++++|||+|.||+.+++.++.+|+ +|+++|+.... +.+.+.|... .++.+++.++|+|+.|+|.
T Consensus 158 a~~~~~~l~g~~VlIiGaG~iG~~~a~~l~~~G~~~V~v~~r~~~ra~~la~~~g~~~~~~~~l~~~l~~aDvVi~at~~ 237 (404)
T 1gpj_A 158 AERELGSLHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDLGGEAVRFDELVDHLARSDVVVSATAA 237 (404)
T ss_dssp HHHHHSCCTTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHHTCEECCGGGHHHHHHTCSEEEECCSS
T ss_pred HHHHhccccCCEEEEEChHHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCceecHHhHHHHhcCCCEEEEccCC
Confidence 01 14789999999999999999999999999 99999987632 3455667643 3677888999999999874
Q ss_pred CccccccccHhHhcc--C----CCceEEEEccCCccccHHHHHHhHhcCCceEEEEeccCCCCCCCCCccccCCcEEE--
Q 007512 262 TPATSKVLNDETFGK--M----KKGVRIINVARGGVIDEEALVRALDSGRVAQAALDVFTEEPPPADSKLVQHERVTV-- 333 (600)
Q Consensus 262 ~~~t~~li~~~~l~~--m----k~gailvNvarg~ivde~aL~~aL~~g~i~ga~lDv~~~EP~~~~~~L~~~~nvil-- 333 (600)
+ ..+++...+.. | +++.+++|++ +|.+.+++++++||+++
T Consensus 238 ~---~~~~~~~~l~~~~lk~r~~~~~v~vdia-----------------------------~P~~i~~~l~~l~~v~l~d 285 (404)
T 1gpj_A 238 P---HPVIHVDDVREALRKRDRRSPILIIDIA-----------------------------NPRDVEEGVENIEDVEVRT 285 (404)
T ss_dssp S---SCCBCHHHHHHHHHHCSSCCCEEEEECC-----------------------------SSCSBCTTGGGSTTEEEEE
T ss_pred C---CceecHHHHHHHHHhccCCCCEEEEEcc-----------------------------CCCCCCccccccCCeEEEe
Confidence 4 45667777766 3 2566777765 36555789999999999
Q ss_pred cCCCCCCcHHHHH----------HHHHHHHHHHHHHHcCC
Q 007512 334 TPHLGASTMEAQE----------GVAIEIAEAVVGALKGE 363 (600)
Q Consensus 334 TPH~~~~t~ea~~----------~~~~~~~~~l~~~l~g~ 363 (600)
+||+++.+.++++ .+..+.++++..|+.+.
T Consensus 286 ~d~l~~~~~~~~~~r~~~~~~~~~li~q~~~~f~~w~~~~ 325 (404)
T 1gpj_A 286 IDDLRVIARENLERRRKEIPKVEKLIEEELSTVEEELEKL 325 (404)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999998887754 45556677777887754
|
| >3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=3.5e-15 Score=159.97 Aligned_cols=159 Identities=20% Similarity=0.280 Sum_probs=119.1
Q ss_pred CceEEE-EcCcccCccC-hhHHHhCCceeecCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCccccccccceeccCC
Q 007512 121 RLKVVG-RAGVGIDNVD-LAAATEFGCLVVNAPTANTVAAAEHGIALLAAMARNVAQADASVKAGKWQRNKYVGVSLVGK 198 (600)
Q Consensus 121 ~Lk~I~-~~g~G~d~iD-~~aa~~~GI~V~n~p~~~~~~vAE~~l~lll~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gk 198 (600)
+++-+. -.++|+-++- +...-+..++|+|..++.+...-+...+.--++...+.. ..+..+.||
T Consensus 156 ~i~G~~EeTttGv~rl~~~~~~g~L~~Pvi~vnds~tK~~fDn~yGt~~s~~~gi~r--------------at~~~L~Gk 221 (435)
T 3gvp_A 156 KIKGIVEESVTGVHRLYQLSKAGKLCVPAMNVNDSVTKQKFDNLYCCRESILDGLKR--------------TTDMMFGGK 221 (435)
T ss_dssp TCCEEEECCHHHHHHHTCC--CCCCCSCEEECTTCHHHHHHHTHHHHHHHHHHHHHH--------------HHCCCCTTC
T ss_pred hcceeEeccchhHHHHHHHHHcCCCCCCEEEecchhhhhhhhhhhhhHHHHHHHHHH--------------hhCceecCC
Confidence 344443 3577776553 334446789999998877766555322211111111111 136789999
Q ss_pred EEEEEecChhHHHHHHHhhcCCCEEEEECCCC-ChhHHHHcCCcccCHHHHhccCCEEEEecCCCccccccccHhHhccC
Q 007512 199 TLAVLGFGKVGSEVARRAKGLGMHVIAHDPYA-PADRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVLNDETFGKM 277 (600)
Q Consensus 199 tiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~-~~~~a~~~g~~~~~l~ell~~aDvV~l~~Pl~~~t~~li~~~~l~~m 277 (600)
+++|+|+|.||+.+|+++++||++|+++|+++ ....+...|+...++++++++||+|++| +.|+++++.+.|+.|
T Consensus 222 tV~ViG~G~IGk~vA~~Lra~Ga~Viv~D~dp~ra~~A~~~G~~v~~Leeal~~ADIVi~a----tgt~~lI~~e~l~~M 297 (435)
T 3gvp_A 222 QVVVCGYGEVGKGCCAALKAMGSIVYVTEIDPICALQACMDGFRLVKLNEVIRQVDIVITC----TGNKNVVTREHLDRM 297 (435)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECCHHHHTTTCSEEEEC----SSCSCSBCHHHHHHS
T ss_pred EEEEEeeCHHHHHHHHHHHHCCCEEEEEeCChhhhHHHHHcCCEeccHHHHHhcCCEEEEC----CCCcccCCHHHHHhc
Confidence 99999999999999999999999999999876 3345667788888999999999999995 457899999999999
Q ss_pred CCceEEEEccCCcc-ccHHHH
Q 007512 278 KKGVRIINVARGGV-IDEEAL 297 (600)
Q Consensus 278 k~gailvNvarg~i-vde~aL 297 (600)
|+|++|+|+|||.+ +|.++|
T Consensus 298 K~gailINvgrg~~EId~~~L 318 (435)
T 3gvp_A 298 KNSCIVCNMGHSNTEIDVASL 318 (435)
T ss_dssp CTTEEEEECSSTTTTBTGGGG
T ss_pred CCCcEEEEecCCCccCCHHHH
Confidence 99999999999987 566655
|
| >2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.55 E-value=2e-15 Score=153.93 Aligned_cols=237 Identities=15% Similarity=0.124 Sum_probs=151.1
Q ss_pred CEEEEEecChhHHHHHHHhhcCCC--EEEEECCCC-ChhHHHHcCCc---ccCHHHHhc-cCCEEEEecCCCcccccccc
Q 007512 198 KTLAVLGFGKVGSEVARRAKGLGM--HVIAHDPYA-PADRARAIGVD---LVSFDEAIA-TADFISLHMPLTPATSKVLN 270 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~g~--~V~~~d~~~-~~~~a~~~g~~---~~~l~ell~-~aDvV~l~~Pl~~~t~~li~ 270 (600)
++|||||+|.||+.+|+.|+..|+ +|++||++. ..+.+.+.|+. ..+++++++ +||+|++|+|.. .+..++.
T Consensus 2 ~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~aDvVilavp~~-~~~~v~~ 80 (281)
T 2g5c_A 2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLSSPVR-TFREIAK 80 (281)
T ss_dssp CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCGGGGGGTCCSEEEECSCHH-HHHHHHH
T ss_pred cEEEEEecCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHCCCcccccCCHHHHhcCCCCEEEEcCCHH-HHHHHHH
Confidence 589999999999999999998888 999999986 34455566764 237888999 999999999944 4555553
Q ss_pred HhHhccCCCceEEEEccCCccccHHHHHHhHhcCCceEEEEeccCCC---CCCCCCccccCCcEEEcCCCCCCcHHHHHH
Q 007512 271 DETFGKMKKGVRIINVARGGVIDEEALVRALDSGRVAQAALDVFTEE---PPPADSKLVQHERVTVTPHLGASTMEAQEG 347 (600)
Q Consensus 271 ~~~l~~mk~gailvNvarg~ivde~aL~~aL~~g~i~ga~lDv~~~E---P~~~~~~L~~~~nvilTPH~~~~t~ea~~~ 347 (600)
+....++++++|+|++++.....+.+.+.+.++.+.+ .-+++.| |..+..+|+...+++++||.++. .+..
T Consensus 81 -~l~~~l~~~~iv~~~~~~~~~~~~~l~~~l~~~~v~~--~p~~~~~~~gp~~a~~~l~~g~~~~~~~~~~~~-~~~~-- 154 (281)
T 2g5c_A 81 -KLSYILSEDATVTDQGSVKGKLVYDLENILGKRFVGG--HPIAGTEKSGVEYSLDNLYEGKKVILTPTKKTD-KKRL-- 154 (281)
T ss_dssp -HHHHHSCTTCEEEECCSCCTHHHHHHHHHHGGGEECE--EEECCCSCCSGGGCCSSTTTTCEEEECCCSSSC-HHHH--
T ss_pred -HHHhhCCCCcEEEECCCCcHHHHHHHHHhccccceee--ccccCCccCChhhhhhHHhCCCCEEEecCCCCC-HHHH--
Confidence 3455689999999999887656677777776643322 1233333 33345678888899999997655 3322
Q ss_pred HHHHHHHHHHHHHcCCCCCccccCCCCChhhhhccc--chH---HHHHHHHH------HHHHHhcCCCCceEEEEEEeec
Q 007512 348 VAIEIAEAVVGALKGELAATAVNAPMVPAEVLTELK--PFV---ELAEKLGR------LAVQLVAGGSGVKTVKVSYASS 416 (600)
Q Consensus 348 ~~~~~~~~l~~~l~g~~~~~~vn~~~i~~~~~~~~~--p~~---~la~~lG~------l~~qL~~g~~~~k~v~i~~~Gs 416 (600)
+.+.++++..........+..++..+.... |+. .+.+.++. .+.+|+++ ++++++....++
T Consensus 155 ------~~v~~l~~~~g~~~~~~~~~~~d~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~r~~~~~ 226 (281)
T 2g5c_A 155 ------KLVKRVWEDVGGVVEYMSPELHDYVFGVVSHLPHAVAFALVDTLIHMSTPEVDLFKYPGG--GFKDFTRIAKSD 226 (281)
T ss_dssp ------HHHHHHHHHTTCEEEECCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCBTTBCGGGCCTT--TGGGC---CCSC
T ss_pred ------HHHHHHHHHcCCEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHhhccc--cHHHHhHHhcCC
Confidence 344444444333332333333333333333 433 23333332 23445555 798888888888
Q ss_pred CCCCccccccccHHHHHhhchhhhccchhhccHH
Q 007512 417 RAPDDLDTRLLRAMITKGLIEPISDVFVNLVNAD 450 (600)
Q Consensus 417 ~a~~~~~~~~~~~a~l~GlL~~~~~~~vn~vnA~ 450 (600)
+. +|.+...++..-+...|+.+..+.-.+.++.
T Consensus 227 p~-~~~~~~~sn~~~~~~~l~~~~~~l~~~~~~i 259 (281)
T 2g5c_A 227 PI-MWRDIFLENKENVMKAIEGFEKSLNHLKELI 259 (281)
T ss_dssp HH-HHHHHHHHTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HH-HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
Confidence 87 8988888888655444545544333444443
|
| >3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A | Back alignment and structure |
|---|
Probab=99.42 E-value=1.9e-14 Score=147.30 Aligned_cols=237 Identities=17% Similarity=0.136 Sum_probs=148.6
Q ss_pred CEEEEEecChhHHHHHHHhhcC--CCEEEEECCCC-ChhHHHHcCCc---ccCHHHHhccCCEEEEecCCCccccccccH
Q 007512 198 KTLAVLGFGKVGSEVARRAKGL--GMHVIAHDPYA-PADRARAIGVD---LVSFDEAIATADFISLHMPLTPATSKVLND 271 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~--g~~V~~~d~~~-~~~~a~~~g~~---~~~l~ell~~aDvV~l~~Pl~~~t~~li~~ 271 (600)
++|||||+|.||+.+|+.|... |++|++||++. ..+.+.+.|+. ..++++++++||+|++|+|... ...++.
T Consensus 7 ~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~aDvVilavp~~~-~~~v~~- 84 (290)
T 3b1f_A 7 KTIYIAGLGLIGASLALGIKRDHPHYKIVGYNRSDRSRDIALERGIVDEATADFKVFAALADVIILAVPIKK-TIDFIK- 84 (290)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSHHHHHHHHHTTSCSEEESCTTTTGGGCSEEEECSCHHH-HHHHHH-
T ss_pred ceEEEEeeCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHHcCCcccccCCHHHhhcCCCEEEEcCCHHH-HHHHHH-
Confidence 6899999999999999999855 78999999876 33444556662 3478888999999999999443 455553
Q ss_pred hHhcc-CCCceEEEEccCCccccHHHHHHhHhc-C-CceE----EEEeccCCCCCCCCCccccCCcEEEcCCCCCCcHHH
Q 007512 272 ETFGK-MKKGVRIINVARGGVIDEEALVRALDS-G-RVAQ----AALDVFTEEPPPADSKLVQHERVTVTPHLGASTMEA 344 (600)
Q Consensus 272 ~~l~~-mk~gailvNvarg~ivde~aL~~aL~~-g-~i~g----a~lDv~~~EP~~~~~~L~~~~nvilTPH~~~~t~ea 344 (600)
+.... ++++++|+|++++.....+.+.+.+.+ + ++.+ ++.++.+ |......+++.++++++||.++.. +.
T Consensus 85 ~l~~~~l~~~~ivi~~~~~~~~~~~~l~~~l~~~~~~~v~~~P~~g~~~~g--~~~a~~~l~~g~~~~~~~~~~~~~-~~ 161 (290)
T 3b1f_A 85 ILADLDLKEDVIITDAGSTKYEIVRAAEYYLKDKPVQFVGSHPMAGSHKSG--AVAANVNLFENAYYIFSPSCLTKP-NT 161 (290)
T ss_dssp HHHTSCCCTTCEEECCCSCHHHHHHHHHHHHTTSSCEEEEEEEC-----CC--TTSCCTTTTTTSEEEEEECTTCCT-TH
T ss_pred HHHhcCCCCCCEEEECCCCchHHHHHHHHhccccCCEEEEeCCcCCCCcch--HHHhhHHHhCCCeEEEecCCCCCH-HH
Confidence 34556 899999999998776556777777765 2 2222 3333333 334456888889999999976552 22
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCccccCCCCChhhhhc---ccchHH--HHHHH---H---HHHHHHhcCCCCceEEEEEE
Q 007512 345 QEGVAIEIAEAVVGALKGELAATAVNAPMVPAEVLTE---LKPFVE--LAEKL---G---RLAVQLVAGGSGVKTVKVSY 413 (600)
Q Consensus 345 ~~~~~~~~~~~l~~~l~g~~~~~~vn~~~i~~~~~~~---~~p~~~--la~~l---G---~l~~qL~~g~~~~k~v~i~~ 413 (600)
.+.+.++++.......+..+..++..+.. +.|... +.+.+ | ..+.+|+++ ++++++..+
T Consensus 162 --------~~~v~~l~~~~G~~~~~~~~~~~d~~~a~~s~~~~~~a~~~~~~~~~~g~~~~~~~~la~~--~~~~~~rla 231 (290)
T 3b1f_A 162 --------IPALQDLLSGLHARYVEIDAAEHDCVTSQISHFPHIIASSLMKQAGDFSESHEMTKHFAAG--GFRDMTRIA 231 (290)
T ss_dssp --------HHHHHHHTGGGCCEEEECCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHCTHHHHHCCH--HHHHTTGGG
T ss_pred --------HHHHHHHHHHcCCEEEEcCHHHHHHHHHHHhhHHHHHHHHHHHHHHhcccchhhHHhhccc--cHHhhhhhh
Confidence 24556666554433222222222222222 223221 22222 2 234566666 777776666
Q ss_pred eecCCCCccccccccHHHHHhhchhhhccchhhccHH
Q 007512 414 ASSRAPDDLDTRLLRAMITKGLIEPISDVFVNLVNAD 450 (600)
Q Consensus 414 ~Gs~a~~~~~~~~~~~a~l~GlL~~~~~~~vn~vnA~ 450 (600)
.+++. +|.+...++..-+...|+.+..+.-.+.++.
T Consensus 232 ~~~p~-~~~~~~~~n~~~~~~~l~~~~~~l~~~~~~l 267 (290)
T 3b1f_A 232 ESEPG-MWTSILLTNQEAVLDRIENFKQRLDEVSNLI 267 (290)
T ss_dssp GSCHH-HHHHHHHHSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHH-HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
Confidence 67776 8888888888766666656555433444444
|
| >2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.40 E-value=2e-14 Score=148.42 Aligned_cols=237 Identities=13% Similarity=0.074 Sum_probs=142.5
Q ss_pred HHHHHHHHcCccccccccceeccCCEEEEEe-cChhHHHHHHHhhcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccC
Q 007512 174 AQADASVKAGKWQRNKYVGVSLVGKTLAVLG-FGKVGSEVARRAKGLGMHVIAHDPYAPADRARAIGVDLVSFDEAIATA 252 (600)
Q Consensus 174 ~~~~~~~~~g~W~~~~~~g~~l~gktiGIIG-lG~IG~~vA~~l~~~g~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~a 252 (600)
.++..++++..|..... ..++||||| +|.||+++|+.|+..|++|.+||++.. .+..+.+++|
T Consensus 3 ~~~~~~~~~~~~~~~~~-----~~~~I~iIGg~G~mG~~la~~l~~~G~~V~~~~~~~~-----------~~~~~~~~~a 66 (298)
T 2pv7_A 3 RESYANENQFGFKTINS-----DIHKIVIVGGYGKLGGLFARYLRASGYPISILDREDW-----------AVAESILANA 66 (298)
T ss_dssp ----------CCCCSCT-----TCCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCG-----------GGHHHHHTTC
T ss_pred hhHHhhhhccCccccCC-----CCCEEEEEcCCCHHHHHHHHHHHhCCCeEEEEECCcc-----------cCHHHHhcCC
Confidence 34455667777864321 357899999 999999999999999999999998652 1467888999
Q ss_pred CEEEEecCCCccccccccHhHhccCCCceEEEEccCCccccHHHHHHhHhcCCceEEEEeccCCCCCC-CCCccccCCcE
Q 007512 253 DFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVIDEEALVRALDSGRVAQAALDVFTEEPPP-ADSKLVQHERV 331 (600)
Q Consensus 253 DvV~l~~Pl~~~t~~li~~~~l~~mk~gailvNvarg~ivde~aL~~aL~~g~i~ga~lDv~~~EP~~-~~~~L~~~~nv 331 (600)
|+|++|+|.. .+..++. +....++++++|+|+++.+....+++.+.+. .++ ....|.. +..+++...++
T Consensus 67 DvVilavp~~-~~~~vl~-~l~~~l~~~~iv~~~~svk~~~~~~~~~~~~-~~~-------v~~hP~~g~~~~~~~g~~~ 136 (298)
T 2pv7_A 67 DVVIVSVPIN-LTLETIE-RLKPYLTENMLLADLTSVKREPLAKMLEVHT-GAV-------LGLHPMFGADIASMAKQVV 136 (298)
T ss_dssp SEEEECSCGG-GHHHHHH-HHGGGCCTTSEEEECCSCCHHHHHHHHHHCS-SEE-------EEEEECSCTTCSCCTTCEE
T ss_pred CEEEEeCCHH-HHHHHHH-HHHhhcCCCcEEEECCCCCcHHHHHHHHhcC-CCE-------EeeCCCCCCCchhhcCCeE
Confidence 9999999954 3666664 3455689999999998876644555554432 112 1112221 12357777789
Q ss_pred EEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCccccCCCCChhhhhccc--chH---HHHHHHH------HHHHHHh
Q 007512 332 TVTPHLGASTMEAQEGVAIEIAEAVVGALKGELAATAVNAPMVPAEVLTELK--PFV---ELAEKLG------RLAVQLV 400 (600)
Q Consensus 332 ilTPH~~~~t~ea~~~~~~~~~~~l~~~l~g~~~~~~vn~~~i~~~~~~~~~--p~~---~la~~lG------~l~~qL~ 400 (600)
++|||. +.+.. +.+.++++.......+..+..++..+..++ |+. .+++.+. ..+.+|+
T Consensus 137 ~l~~~~---~~~~~--------~~v~~l~~~~G~~~~~~~~~~~d~~~a~~~~~p~~~a~~l~~~l~~~g~~~~~~~~la 205 (298)
T 2pv7_A 137 VRCDGR---FPERY--------EWLLEQIQIWGAKIYQTNATEHDHNMTYIQALRHFSTFANGLHLSKQPINLANLLALS 205 (298)
T ss_dssp EEEEEE---CGGGT--------HHHHHHHHHTTCEEEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSCCHHHHHHTC
T ss_pred EEecCC---CHHHH--------HHHHHHHHHcCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHhhc
Confidence 999974 22222 344444544343333333333444444444 654 2333332 3456677
Q ss_pred cCCCCceE----EEEEEeecCCCCccccccccHHHHHhhchhhhccchhhccHHH
Q 007512 401 AGGSGVKT----VKVSYASSRAPDDLDTRLLRAMITKGLIEPISDVFVNLVNADY 451 (600)
Q Consensus 401 ~g~~~~k~----v~i~~~Gs~a~~~~~~~~~~~a~l~GlL~~~~~~~vn~vnA~~ 451 (600)
++ +|++ +++.+.+++. +|.+...++...+. .|+.+..+.-.+.++..
T Consensus 206 ~~--~f~~~~~~~~ria~~~p~-~~~di~~sn~~~~~-~l~~~~~~l~~~~~~l~ 256 (298)
T 2pv7_A 206 SP--IYRLELAMIGRLFAQDAE-LYADIIMDKSENLA-VIETLKQTYDEALTFFE 256 (298)
T ss_dssp CH--HHHHHHHHHHHHHTSCHH-HHHHHHC----CHH-HHHHHHHHHHHHHHHHH
T ss_pred CH--HHHHHHHHHHHHhcCCHH-HHHHHHHHCHHHHH-HHHHHHHHHHHHHHHHH
Confidence 66 7887 7777777887 89998888887777 66666654444444444
|
| >2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.25 E-value=4.2e-12 Score=129.05 Aligned_cols=223 Identities=14% Similarity=0.107 Sum_probs=138.6
Q ss_pred CEEEEEecChhHHHHHHHhhcCCCEEEEECCCC-ChhHHHHcCCc---ccCHHHHhccCCEEEEecCCCccccccccHhH
Q 007512 198 KTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYA-PADRARAIGVD---LVSFDEAIATADFISLHMPLTPATSKVLNDET 273 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~-~~~~a~~~g~~---~~~l~ell~~aDvV~l~~Pl~~~t~~li~~~~ 273 (600)
++|+|||+|.||+.+|+.|...|++|.+||++. ..+.+.+.|+. ..+++++ ++||+|++|+| ...+..++. +.
T Consensus 1 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~D~vi~av~-~~~~~~~~~-~l 77 (279)
T 2f1k_A 1 MKIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVERQLVDEAGQDLSLL-QTAKIIFLCTP-IQLILPTLE-KL 77 (279)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTSCSEEESCGGGG-TTCSEEEECSC-HHHHHHHHH-HH
T ss_pred CEEEEEcCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHhCCCCccccCCHHHh-CCCCEEEEECC-HHHHHHHHH-HH
Confidence 479999999999999999999999999999876 33444556663 3478888 99999999999 344555553 44
Q ss_pred hccCCCceEEEEccCCccccHHHHHHhHhcCCceEEEEeccCC---CCCCCCCccccCCcEEEcCCCCCCcHHHHHHHHH
Q 007512 274 FGKMKKGVRIINVARGGVIDEEALVRALDSGRVAQAALDVFTE---EPPPADSKLVQHERVTVTPHLGASTMEAQEGVAI 350 (600)
Q Consensus 274 l~~mk~gailvNvarg~ivde~aL~~aL~~g~i~ga~lDv~~~---EP~~~~~~L~~~~nvilTPH~~~~t~ea~~~~~~ 350 (600)
...++++++|+|++.......+.+.+.+. ..+ +. .-+++. .|......++....++++|+-+.. .+.
T Consensus 78 ~~~~~~~~~vv~~~~~~~~~~~~~~~~~~-~~~-~~-~p~~g~~~~gp~~a~~~~~~g~~~~~~~~~~~~-~~~------ 147 (279)
T 2f1k_A 78 IPHLSPTAIVTDVASVKTAIAEPASQLWS-GFI-GG-HPMAGTAAQGIDGAEENLFVNAPYVLTPTEYTD-PEQ------ 147 (279)
T ss_dssp GGGSCTTCEEEECCSCCHHHHHHHHHHST-TCE-EE-EECCCCSCSSGGGCCTTTTTTCEEEEEECTTCC-HHH------
T ss_pred HhhCCCCCEEEECCCCcHHHHHHHHHHhC-CEe-ec-CcccCCccCCHHHHhHHHhCCCcEEEecCCCCC-HHH------
Confidence 55689999999998766655566655443 333 22 123322 232334467777889999975443 332
Q ss_pred HHHHHHHHHHcCCCCCccccCCCCChhhhhccc--chHHHH---HHHH--------HHHHHHhcCCCCceEEEEEEeecC
Q 007512 351 EIAEAVVGALKGELAATAVNAPMVPAEVLTELK--PFVELA---EKLG--------RLAVQLVAGGSGVKTVKVSYASSR 417 (600)
Q Consensus 351 ~~~~~l~~~l~g~~~~~~vn~~~i~~~~~~~~~--p~~~la---~~lG--------~l~~qL~~g~~~~k~v~i~~~Gs~ 417 (600)
.+.+.++++..........+..+.+....++ |+.... ..++ ..+.+|+.+ ++++++....+++
T Consensus 148 --~~~v~~l~~~~g~~~~~~~~~~~~~~~~~~~~~p~~i~~al~~~~~~~~~~~~~~~~~~l~~~--~~~~~~r~~~~~p 223 (279)
T 2f1k_A 148 --LACLRSVLEPLGVKIYLCTPADHDQAVAWISHLPVMVSAALIQACAGEKDGDILKLAQNLASS--GFRDTSRVGGGNP 223 (279)
T ss_dssp --HHHHHHHHGGGTCEEEECCHHHHHHHHHHHTHHHHHHHHHHHHHHHTCSCHHHHHHHHHHCCH--HHHHHHTGGGSCH
T ss_pred --HHHHHHHHHHcCCEEEEcCHHHHHHHHHHHhhHHHHHHHHHHHHHHhcccccchhHHHhhcCC--cccchhcccCCCH
Confidence 2455566655443333333333444444443 433222 1111 234556655 6776655556777
Q ss_pred CCCccccccccHHHHHhhchh
Q 007512 418 APDDLDTRLLRAMITKGLIEP 438 (600)
Q Consensus 418 a~~~~~~~~~~~a~l~GlL~~ 438 (600)
. +|.+...++...+...|+.
T Consensus 224 ~-~~~~~~~s~~~~~~~~l~~ 243 (279)
T 2f1k_A 224 E-LGTMMATYNQRALLKSLQD 243 (279)
T ss_dssp H-HHHHHHHHSHHHHHHHHHH
T ss_pred H-HHHHHHHHhHHHHHHHHHH
Confidence 6 7888777776654433433
|
| >3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str} | Back alignment and structure |
|---|
Probab=99.24 E-value=3e-10 Score=120.63 Aligned_cols=215 Identities=15% Similarity=0.147 Sum_probs=137.1
Q ss_pred CCHhHHHHhcccC-cEEEc------cCCCHhHHhh---hc---CCceEEEEcCCCCCCHHHHhccCCCceEEEEcCcccC
Q 007512 67 LGQAGLDLLNEFA-NVDCA------YNLSPEELCT---KI---SLCDALIVRSGTKVNRDVFESSAGRLKVVGRAGVGID 133 (600)
Q Consensus 67 l~~~~~~~l~~~~-~v~~~------~~~~~~el~~---~i---~~~d~li~~~~~~~~~~~l~~~~~~Lk~I~~~g~G~d 133 (600)
+.|+..+.|.+.+ +|.+. ..++.++..+ .+ -.+|.++- -.+.+.+.++.++++-.+++......|
T Consensus 40 ltP~~v~~L~~~G~~V~VE~gaG~~~~f~D~~Y~~aGa~i~~~~~adiIlk--Vk~p~~~e~~~l~~g~~l~~~lh~~~~ 117 (381)
T 3p2y_A 40 LVPKVVEKLSARGLEVVVESAAGAGALFSDADYERAGATIGDPWPADVVVK--VNPPTSDEISQLKPGSVLIGFLAPRTQ 117 (381)
T ss_dssp SCHHHHHHHHHTTCEEEECTTTTGGGTCCHHHHHHTTCEESCCTTSSEEEC--SSCCCHHHHTTSCTTCEEEECCCTTTC
T ss_pred CCHHHHHHHHhCCCEEEEeCCCCccCCCChHHHHHCCCEEeeeecCCEEEE--eCCCChhHHhhccCCCEEEEEeccccC
Confidence 5678888776654 55543 2355555533 11 12676652 123456667777667777776655544
Q ss_pred ccChhHHHhCCceeecCCCCC----h------HHHHHHHHHHHHHHHhchHHHHHHHHcCccccccccc-eeccCCEEEE
Q 007512 134 NVDLAAATEFGCLVVNAPTAN----T------VAAAEHGIALLAAMARNVAQADASVKAGKWQRNKYVG-VSLVGKTLAV 202 (600)
Q Consensus 134 ~iD~~aa~~~GI~V~n~p~~~----~------~~vAE~~l~lll~~~R~i~~~~~~~~~g~W~~~~~~g-~~l~gktiGI 202 (600)
.=-++++.++||...---... + .+++|.+= .+-+..+.. .-++.......+ ..+.+++|+|
T Consensus 118 ~~l~~~l~~~~it~ia~E~i~~~~~~~~l~~l~~~s~iAG------y~Av~~aa~--~l~~~~~~l~~~~~~v~~~kV~V 189 (381)
T 3p2y_A 118 PELASRLRIADVTAFAMESIPRISRAQTMDALSSQANVAG------YKAVLLGAS--LSTRFVPMLTTAAGTVKPASALV 189 (381)
T ss_dssp HHHHHHHHHTTCEEEEGGGCCSSGGGGGGCHHHHHHHHHH------HHHHHHHHH--HCSSCSSCEECSSCEECCCEEEE
T ss_pred HHHHHHHHHCCCeEEEeeccccccccccceeecchhHHHH------HHHHHHHHH--HhhhhhhhhhcccCCcCCCEEEE
Confidence 444688899999885422211 1 11222221 111111111 111111111111 2578999999
Q ss_pred EecChhHHHHHHHhhcCCCEEEEECCCC-ChhHHHHcCCccc--------------------------CHHHHhccCCEE
Q 007512 203 LGFGKVGSEVARRAKGLGMHVIAHDPYA-PADRARAIGVDLV--------------------------SFDEAIATADFI 255 (600)
Q Consensus 203 IGlG~IG~~vA~~l~~~g~~V~~~d~~~-~~~~a~~~g~~~~--------------------------~l~ell~~aDvV 255 (600)
||+|.||..+|+.++++|++|++||++. ..+.+.+.|.++. ++++.+++||+|
T Consensus 190 iG~G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~~lGa~~~~l~~~~~~~~gya~~~~~~~~~~~~~~l~e~l~~aDIV 269 (381)
T 3p2y_A 190 LGVGVAGLQALATAKRLGAKTTGYDVRPEVAEQVRSVGAQWLDLGIDAAGEGGYARELSEAERAQQQQALEDAITKFDIV 269 (381)
T ss_dssp ESCSHHHHHHHHHHHHHTCEEEEECSSGGGHHHHHHTTCEECCCC-------------CHHHHHHHHHHHHHHHTTCSEE
T ss_pred ECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEeccccccccccchhhhhHHHHhhhHHHHHHHHhcCCEE
Confidence 9999999999999999999999999987 4456667776432 367899999999
Q ss_pred EEec--CCCccccccccHhHhccCCCceEEEEcc--CCccc
Q 007512 256 SLHM--PLTPATSKVLNDETFGKMKKGVRIINVA--RGGVI 292 (600)
Q Consensus 256 ~l~~--Pl~~~t~~li~~~~l~~mk~gailvNva--rg~iv 292 (600)
+.++ |. ..+..+++++.++.||||++|||++ +|+.+
T Consensus 270 I~tv~iPg-~~ap~Lvt~emv~~MkpGsVIVDvA~d~GG~~ 309 (381)
T 3p2y_A 270 ITTALVPG-RPAPRLVTAAAATGMQPGSVVVDLAGETGGNC 309 (381)
T ss_dssp EECCCCTT-SCCCCCBCHHHHHTSCTTCEEEETTGGGTCSB
T ss_pred EECCCCCC-cccceeecHHHHhcCCCCcEEEEEeCCCCCcc
Confidence 9886 53 3467789999999999999999998 55544
|
| >4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=99.21 E-value=1.8e-11 Score=127.54 Aligned_cols=131 Identities=18% Similarity=0.176 Sum_probs=91.9
Q ss_pred HHHHHHcCcccccccc-----ceeccCCEEEEEecChhHHHHHHHhhcCCCEEEEECCCC-ChhHHHHcCCcc-cCHHHH
Q 007512 176 ADASVKAGKWQRNKYV-----GVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYA-PADRARAIGVDL-VSFDEA 248 (600)
Q Consensus 176 ~~~~~~~g~W~~~~~~-----g~~l~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~-~~~~a~~~g~~~-~~l~el 248 (600)
.++.++...|..+.+. ......++|||||+|.||..+|+.|...|++|.+||++. ..+...+.|+.. .+++++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~~~~e~ 84 (320)
T 4dll_A 5 HHHSSGVDLGTENLYFQSMTVESDPYARKITFLGTGSMGLPMARRLCEAGYALQVWNRTPARAASLAALGATIHEQARAA 84 (320)
T ss_dssp ------------------------CCCSEEEEECCTTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTTCEEESSHHHH
T ss_pred ccccccccccccccceechhhccccCCCEEEEECccHHHHHHHHHHHhCCCeEEEEcCCHHHHHHHHHCCCEeeCCHHHH
Confidence 3455666677654321 123456799999999999999999999999999999886 334445557765 489999
Q ss_pred hccCCEEEEecCCCccccccccH-hHhccCCCceEEEEccCCccccHHHHHHhHhcCCc
Q 007512 249 IATADFISLHMPLTPATSKVLND-ETFGKMKKGVRIINVARGGVIDEEALVRALDSGRV 306 (600)
Q Consensus 249 l~~aDvV~l~~Pl~~~t~~li~~-~~l~~mk~gailvNvarg~ivde~aL~~aL~~g~i 306 (600)
+++||+|++|+|....++.++.. ..+..+++|.++||++++.+.+.+.+.+.+.+..+
T Consensus 85 ~~~aDvVi~~vp~~~~~~~v~~~~~~~~~l~~~~~vi~~st~~~~~~~~~~~~~~~~g~ 143 (320)
T 4dll_A 85 ARDADIVVSMLENGAVVQDVLFAQGVAAAMKPGSLFLDMASITPREARDHAARLGALGI 143 (320)
T ss_dssp HTTCSEEEECCSSHHHHHHHHTTTCHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTC
T ss_pred HhcCCEEEEECCCHHHHHHHHcchhHHhhCCCCCEEEecCCCCHHHHHHHHHHHHHcCC
Confidence 99999999999966666665542 45667899999999999998888888888877544
|
| >3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=2.1e-11 Score=126.10 Aligned_cols=114 Identities=19% Similarity=0.270 Sum_probs=95.6
Q ss_pred CEEEEEecChhHHHHHHHhhcCCCEEEEECCCC-ChhHHHHcCCccc-CHHHHhccCCEEEEecCCCccccccccH--hH
Q 007512 198 KTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYA-PADRARAIGVDLV-SFDEAIATADFISLHMPLTPATSKVLND--ET 273 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~-~~~~a~~~g~~~~-~l~ell~~aDvV~l~~Pl~~~t~~li~~--~~ 273 (600)
|+|||||+|.||..+|++|...|++|.+||+.. ..+...+.|.... ++.|+++.||+|++|+|..+..+.++.. ..
T Consensus 4 ~kIgfIGlG~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~~~Ga~~a~s~~e~~~~~dvv~~~l~~~~~v~~V~~~~~g~ 83 (300)
T 3obb_A 4 KQIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQSAVDGLVAAGASAARSARDAVQGADVVISMLPASQHVEGLYLDDDGL 83 (300)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCEEEEECSSHHHHHHHHHTTCEECSSHHHHHTTCSEEEECCSCHHHHHHHHHSSSSS
T ss_pred CEEEEeeehHHHHHHHHHHHhCCCeEEEEcCCHHHHHHHHHcCCEEcCCHHHHHhcCCceeecCCchHHHHHHHhchhhh
Confidence 589999999999999999999999999999987 3455566787654 8999999999999999988877776633 36
Q ss_pred hccCCCceEEEEccCCccccHHHHHHhHhcCCceEEEEec
Q 007512 274 FGKMKKGVRIINVARGGVIDEEALVRALDSGRVAQAALDV 313 (600)
Q Consensus 274 l~~mk~gailvNvarg~ivde~aL~~aL~~g~i~ga~lDv 313 (600)
++.+++|.++||++....-+...+.+.+++..+ ..+|.
T Consensus 84 ~~~~~~g~iiId~sT~~p~~~~~~a~~~~~~G~--~~lDa 121 (300)
T 3obb_A 84 LAHIAPGTLVLECSTIAPTSARKIHAAARERGL--AMLDA 121 (300)
T ss_dssp TTSCCC-CEEEECSCCCHHHHHHHHHHHHTTTC--EEEEC
T ss_pred hhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCC--EEEec
Confidence 778999999999999999888999999988766 55663
|
| >3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.19 E-value=1.8e-11 Score=126.81 Aligned_cols=114 Identities=18% Similarity=0.142 Sum_probs=93.7
Q ss_pred eeccCCEEEEEecChhHHHHHHHhhcCCCEEEEECCCC-ChhHHHHcCCcc-cCHHHHhccCCEEEEecCCCcccccccc
Q 007512 193 VSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYA-PADRARAIGVDL-VSFDEAIATADFISLHMPLTPATSKVLN 270 (600)
Q Consensus 193 ~~l~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~-~~~~a~~~g~~~-~~l~ell~~aDvV~l~~Pl~~~t~~li~ 270 (600)
.++..++|||||+|.||+.+|++|...|++|.+||++. ..+.+.+.|+.. .++++++++||+|++|+|....++.++.
T Consensus 5 ~~~~~~~IgiIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~aDvVi~~vp~~~~~~~v~~ 84 (306)
T 3l6d_A 5 DESFEFDVSVIGLGAMGTIMAQVLLKQGKRVAIWNRSPGKAAALVAAGAHLCESVKAALSASPATIFVLLDNHATHEVLG 84 (306)
T ss_dssp CCCCSCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTCEECSSHHHHHHHSSEEEECCSSHHHHHHHHT
T ss_pred cccCCCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCeecCCHHHHHhcCCEEEEEeCCHHHHHHHhc
Confidence 45667899999999999999999999999999999886 334455567765 4899999999999999997666777775
Q ss_pred HhHhccCCCceEEEEccCCccccHHHHHHhHhcCCc
Q 007512 271 DETFGKMKKGVRIINVARGGVIDEEALVRALDSGRV 306 (600)
Q Consensus 271 ~~~l~~mk~gailvNvarg~ivde~aL~~aL~~g~i 306 (600)
.+.+..+++|.++||+++....+...+.+.+.+..+
T Consensus 85 ~~~l~~~~~g~ivid~st~~~~~~~~l~~~~~~~g~ 120 (306)
T 3l6d_A 85 MPGVARALAHRTIVDYTTNAQDEGLALQGLVNQAGG 120 (306)
T ss_dssp STTHHHHTTTCEEEECCCCCTTHHHHHHHHHHHTTC
T ss_pred ccchhhccCCCEEEECCCCCHHHHHHHHHHHHHcCC
Confidence 334566789999999999998888888888876544
|
| >4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.18 E-value=6.6e-11 Score=123.24 Aligned_cols=137 Identities=18% Similarity=0.152 Sum_probs=95.0
Q ss_pred HHHHHHcCccccccccceeccCCEEEEEecChhHHHHHHHhhcCC-CEEEEECCCCC--------hhHHHHcCCccc-CH
Q 007512 176 ADASVKAGKWQRNKYVGVSLVGKTLAVLGFGKVGSEVARRAKGLG-MHVIAHDPYAP--------ADRARAIGVDLV-SF 245 (600)
Q Consensus 176 ~~~~~~~g~W~~~~~~g~~l~gktiGIIGlG~IG~~vA~~l~~~g-~~V~~~d~~~~--------~~~a~~~g~~~~-~l 245 (600)
++.+.+-+.|.++.++.. ..++|||||+|.||..+|+.|...| ++|++||++.. .+...+.|+ .. ++
T Consensus 5 ~~~~~~~~~~~~~~~~~~--M~m~IgvIG~G~mG~~lA~~L~~~G~~~V~~~dr~~~~~~~~~~~~~~~~~~g~-~~~s~ 81 (317)
T 4ezb_A 5 HHHSSGVDLGTENLYFQS--MMTTIAFIGFGEAAQSIAGGLGGRNAARLAAYDLRFNDPAASGALRARAAELGV-EPLDD 81 (317)
T ss_dssp ----------CCCHHHHT--SCCEEEEECCSHHHHHHHHHHHTTTCSEEEEECGGGGCTTTHHHHHHHHHHTTC-EEESS
T ss_pred cccccccccCcccCcccc--cCCeEEEECccHHHHHHHHHHHHcCCCeEEEEeCCCccccchHHHHHHHHHCCC-CCCCH
Confidence 444455566777644221 2478999999999999999999999 99999998751 123345577 66 88
Q ss_pred HHHhccCCEEEEecCCCccccccccHhHhccCCCceEEEEccCCccccHHHHHHhHhcCCceEEEEeccCCC
Q 007512 246 DEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVIDEEALVRALDSGRVAQAALDVFTEE 317 (600)
Q Consensus 246 ~ell~~aDvV~l~~Pl~~~t~~li~~~~l~~mk~gailvNvarg~ivde~aL~~aL~~g~i~ga~lDv~~~E 317 (600)
.+++++||+|++|+|....... + ......++++.++||+++........+.+.+++..+....--|++.+
T Consensus 82 ~e~~~~aDvVi~avp~~~~~~~-~-~~i~~~l~~~~ivv~~st~~p~~~~~~~~~l~~~g~~~~d~pv~g~~ 151 (317)
T 4ezb_A 82 VAGIACADVVLSLVVGAATKAV-A-ASAAPHLSDEAVFIDLNSVGPDTKALAAGAIATGKGSFVEGAVMARV 151 (317)
T ss_dssp GGGGGGCSEEEECCCGGGHHHH-H-HHHGGGCCTTCEEEECCSCCHHHHHHHHHHHHTSSCEEEEEEECSCS
T ss_pred HHHHhcCCEEEEecCCHHHHHH-H-HHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeccCCCCc
Confidence 9999999999999996554433 3 55667799999999999988888888888887754422222356643
|
| >3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.17 E-value=4.4e-11 Score=124.02 Aligned_cols=115 Identities=14% Similarity=0.130 Sum_probs=92.6
Q ss_pred ceeccCCEEEEEecChhHHHHHHHhhcCCCEEEEECCCC-ChhHHHHcCCccc-CHHHHhccCCEEEEecCCCccccccc
Q 007512 192 GVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYA-PADRARAIGVDLV-SFDEAIATADFISLHMPLTPATSKVL 269 (600)
Q Consensus 192 g~~l~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~-~~~~a~~~g~~~~-~l~ell~~aDvV~l~~Pl~~~t~~li 269 (600)
.....-++|||||+|.||..+|+.|...|++|.+||++. ..+...+.|+... ++++++++||+|++|+|....++.++
T Consensus 16 ~~~~~m~~I~iIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~~~~~~~~~aDvvi~~vp~~~~~~~v~ 95 (310)
T 3doj_A 16 PRGSHMMEVGFLGLGIMGKAMSMNLLKNGFKVTVWNRTLSKCDELVEHGASVCESPAEVIKKCKYTIAMLSDPCAALSVV 95 (310)
T ss_dssp --CCCSCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGGGGHHHHHTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHH
T ss_pred cccccCCEEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHCCCeEcCCHHHHHHhCCEEEEEcCCHHHHHHHH
Confidence 345566899999999999999999999999999999987 3455566787654 89999999999999999665666655
Q ss_pred --cHhHhccCCCceEEEEccCCccccHHHHHHhHhcCCc
Q 007512 270 --NDETFGKMKKGVRIINVARGGVIDEEALVRALDSGRV 306 (600)
Q Consensus 270 --~~~~l~~mk~gailvNvarg~ivde~aL~~aL~~g~i 306 (600)
.+..+..+++|.++||+++......+.+.+.+.+..+
T Consensus 96 ~~~~~l~~~l~~g~~vv~~st~~~~~~~~~~~~~~~~g~ 134 (310)
T 3doj_A 96 FDKGGVLEQICEGKGYIDMSTVDAETSLKINEAITGKGG 134 (310)
T ss_dssp HSTTCGGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTC
T ss_pred hCchhhhhccCCCCEEEECCCCCHHHHHHHHHHHHHcCC
Confidence 2445667999999999999888777888777776543
|
| >1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=1.6e-10 Score=121.90 Aligned_cols=108 Identities=25% Similarity=0.363 Sum_probs=92.5
Q ss_pred ce-eccCCEEEEEecChhHHHHHHHhhcCCCEEEEECCCCC-hhHHHHcCCcccCHHHHhc-cCCEEEEecCCCcccccc
Q 007512 192 GV-SLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAP-ADRARAIGVDLVSFDEAIA-TADFISLHMPLTPATSKV 268 (600)
Q Consensus 192 g~-~l~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~-~~~a~~~g~~~~~l~ell~-~aDvV~l~~Pl~~~t~~l 268 (600)
|. ++.|||++|+|+|+||+.+|++++.+|++|+++|++.. .+.+.+.|.+.++.++++. +||+++-| .+.++
T Consensus 169 G~~~L~GktV~I~G~GnVG~~~A~~l~~~GakVvvsD~~~~~~~~a~~~ga~~v~~~ell~~~~DIliP~-----A~~~~ 243 (355)
T 1c1d_A 169 GLGSLDGLTVLVQGLGAVGGSLASLAAEAGAQLLVADTDTERVAHAVALGHTAVALEDVLSTPCDVFAPC-----AMGGV 243 (355)
T ss_dssp TCCCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECCGGGGGGCCCSEEEEC-----SCSCC
T ss_pred CCCCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEEeCCccHHHHHHhcCCEEeChHHhhcCccceecHh-----HHHhh
Confidence 55 79999999999999999999999999999999998753 3345567877888899988 99999853 47889
Q ss_pred ccHhHhccCCCceEEEEccCCccccHHHHHHhHhcCCc
Q 007512 269 LNDETFGKMKKGVRIINVARGGVIDEEALVRALDSGRV 306 (600)
Q Consensus 269 i~~~~l~~mk~gailvNvarg~ivde~aL~~aL~~g~i 306 (600)
|+.+.++.|| ..+|+|.+++++.++++ .++|+++.|
T Consensus 244 I~~~~~~~lk-~~iVie~AN~p~t~~eA-~~~L~~~gI 279 (355)
T 1c1d_A 244 ITTEVARTLD-CSVVAGAANNVIADEAA-SDILHARGI 279 (355)
T ss_dssp BCHHHHHHCC-CSEECCSCTTCBCSHHH-HHHHHHTTC
T ss_pred cCHHHHhhCC-CCEEEECCCCCCCCHHH-HHHHHhCCE
Confidence 9999999998 68999999999998777 477888766
|
| >4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans} | Back alignment and structure |
|---|
Probab=99.16 E-value=3.1e-11 Score=124.71 Aligned_cols=113 Identities=16% Similarity=0.204 Sum_probs=91.6
Q ss_pred CEEEEEecChhHHHHHHHhhcCCCEEEEECCCC-ChhHHHHcCCccc-CHHHHhccCCEEEEecCCCccccccccHhHhc
Q 007512 198 KTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYA-PADRARAIGVDLV-SFDEAIATADFISLHMPLTPATSKVLNDETFG 275 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~-~~~~a~~~g~~~~-~l~ell~~aDvV~l~~Pl~~~t~~li~~~~l~ 275 (600)
++|||||+|.||..+|++|...|++|++||+.. ..+...+.|.... ++.|+++.||+|++|+|..+..+..+....+.
T Consensus 6 ~kIgfIGLG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~~dvvi~~l~~~~~~~~v~~~~~~~ 85 (297)
T 4gbj_A 6 EKIAFLGLGNLGTPIAEILLEAGYELVVWNRTASKAEPLTKLGATVVENAIDAITPGGIVFSVLADDAAVEELFSMELVE 85 (297)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCEEEEC-------CTTTTTTCEECSSGGGGCCTTCEEEECCSSHHHHHHHSCHHHHH
T ss_pred CcEEEEecHHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCeEeCCHHHHHhcCCceeeeccchhhHHHHHHHHHHh
Confidence 589999999999999999999999999999877 3344556677654 89999999999999999777777777777888
Q ss_pred cCCCceEEEEccCCccccHHHHHHhHhcCCceEEEEe
Q 007512 276 KMKKGVRIINVARGGVIDEEALVRALDSGRVAQAALD 312 (600)
Q Consensus 276 ~mk~gailvNvarg~ivde~aL~~aL~~g~i~ga~lD 312 (600)
.++++.++||++....-....+.+.+.+..+ ..+|
T Consensus 86 ~~~~~~iiid~sT~~p~~~~~~~~~~~~~g~--~~ld 120 (297)
T 4gbj_A 86 KLGKDGVHVSMSTISPETSRQLAQVHEWYGA--HYVG 120 (297)
T ss_dssp HHCTTCEEEECSCCCHHHHHHHHHHHHHTTC--EEEE
T ss_pred hcCCCeEEEECCCCChHHHHHHHHHHHhcCC--ceec
Confidence 8999999999999888888888888887655 4444
|
| >4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=3.6e-10 Score=115.58 Aligned_cols=130 Identities=18% Similarity=0.112 Sum_probs=94.0
Q ss_pred CEEEEEecChhHHHHHHHhhcCCCEEEEECCCCC-hhHHHHc-----------C--------------Cc-ccCHHHHhc
Q 007512 198 KTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAP-ADRARAI-----------G--------------VD-LVSFDEAIA 250 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~-~~~a~~~-----------g--------------~~-~~~l~ell~ 250 (600)
++|+|||+|.||+.+|+.+...|++|++||++.. .+.+.+. | +. ..+++++++
T Consensus 5 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~ 84 (283)
T 4e12_A 5 TNVTVLGTGVLGSQIAFQTAFHGFAVTAYDINTDALDAAKKRFEGLAAVYEKEVAGAADGAAQKALGGIRYSDDLAQAVK 84 (283)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHSTTCTTTHHHHHHHHCEEESCHHHHTT
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHcCeEEeCCHHHHhc
Confidence 6899999999999999999999999999998762 2322221 1 22 247888999
Q ss_pred cCCEEEEecCCCccccccccHhHhccCCCceEEEEccCCccccHHHHHHhHhcCCceEEEEeccCCCCCCCCCccccCCc
Q 007512 251 TADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVIDEEALVRALDSGRVAQAALDVFTEEPPPADSKLVQHER 330 (600)
Q Consensus 251 ~aDvV~l~~Pl~~~t~~li~~~~l~~mk~gailvNvarg~ivde~aL~~aL~~g~i~ga~lDv~~~EP~~~~~~L~~~~n 330 (600)
+||+|+.|+|.+.+.+..+-++....+++++++++.+++- ...++.+++... -...+++.|. |.+..+.
T Consensus 85 ~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~il~s~tS~~--~~~~la~~~~~~-~~~ig~h~~~--------p~~~~~l 153 (283)
T 4e12_A 85 DADLVIEAVPESLDLKRDIYTKLGELAPAKTIFATNSSTL--LPSDLVGYTGRG-DKFLALHFAN--------HVWVNNT 153 (283)
T ss_dssp TCSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSSS--CHHHHHHHHSCG-GGEEEEEECS--------STTTSCE
T ss_pred cCCEEEEeccCcHHHHHHHHHHHHhhCCCCcEEEECCCCC--CHHHHHhhcCCC-cceEEEccCC--------CcccCce
Confidence 9999999999876666656566677799999999665553 455666666442 1235666553 3345677
Q ss_pred EEEcCCCC
Q 007512 331 VTVTPHLG 338 (600)
Q Consensus 331 vilTPH~~ 338 (600)
+.++||..
T Consensus 154 vevv~~~~ 161 (283)
T 4e12_A 154 AEVMGTTK 161 (283)
T ss_dssp EEEEECTT
T ss_pred EEEEeCCC
Confidence 88999853
|
| >3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=99.13 E-value=1.2e-10 Score=120.96 Aligned_cols=139 Identities=17% Similarity=0.134 Sum_probs=91.2
Q ss_pred HHHHHcCccccccc--cceeccCCEEEEEecChhHHHHHHHhhcCCC-EEEEECCCC---ChhHHHHcCCccc-CHHHHh
Q 007512 177 DASVKAGKWQRNKY--VGVSLVGKTLAVLGFGKVGSEVARRAKGLGM-HVIAHDPYA---PADRARAIGVDLV-SFDEAI 249 (600)
Q Consensus 177 ~~~~~~g~W~~~~~--~g~~l~gktiGIIGlG~IG~~vA~~l~~~g~-~V~~~d~~~---~~~~a~~~g~~~~-~l~ell 249 (600)
+++++.+.|.++.. .......++|||||+|.||..+|+.|...|+ +|.+||++. ..+.+.+.|+... ++.+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~I~iIG~G~mG~~~A~~L~~~G~~~V~~~dr~~~~~~~~~~~~~g~~~~~~~~e~~ 81 (312)
T 3qsg_A 2 HHHHHHSSGVDLGTENLYFQSNAMKLGFIGFGEAASAIASGLRQAGAIDMAAYDAASAESWRPRAEELGVSCKASVAEVA 81 (312)
T ss_dssp -----------------------CEEEEECCSHHHHHHHHHHHHHSCCEEEEECSSCHHHHHHHHHHTTCEECSCHHHHH
T ss_pred CcccccccccccCcccccccCCCCEEEEECccHHHHHHHHHHHHCCCCeEEEEcCCCCHHHHHHHHHCCCEEeCCHHHHH
Confidence 34567777875421 1223446799999999999999999998899 999999962 3344566787654 899999
Q ss_pred ccCCEEEEecCCCccccccccHhHhccCCCceEEEEccCCccccHHHHHHhHhcCCceEEEEe--ccCCC
Q 007512 250 ATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVIDEEALVRALDSGRVAQAALD--VFTEE 317 (600)
Q Consensus 250 ~~aDvV~l~~Pl~~~t~~li~~~~l~~mk~gailvNvarg~ivde~aL~~aL~~g~i~ga~lD--v~~~E 317 (600)
++||+|++|+|...... .+ ......++++.+|||+++.......++.+.+.+..++...+| |++.+
T Consensus 82 ~~aDvVi~~vp~~~~~~-~~-~~l~~~l~~~~ivvd~st~~~~~~~~~~~~~~~~~~g~~~vd~pv~g~~ 149 (312)
T 3qsg_A 82 GECDVIFSLVTAQAALE-VA-QQAGPHLCEGALYADFTSCSPAVKRAIGDVISRHRPSAQYAAVAVMSAV 149 (312)
T ss_dssp HHCSEEEECSCTTTHHH-HH-HHHGGGCCTTCEEEECCCCCHHHHHHHHHHHHHHCTTCEEEEEEECSCS
T ss_pred hcCCEEEEecCchhHHH-HH-HhhHhhcCCCCEEEEcCCCCHHHHHHHHHHHHhhcCCCeEEeccccCCc
Confidence 99999999999665433 33 456677999999999999888778888777766422223344 56644
|
| >4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.12 E-value=7.3e-10 Score=118.52 Aligned_cols=214 Identities=17% Similarity=0.204 Sum_probs=133.7
Q ss_pred CCHhHHHHhcccC-cEEEc------cCCCHhHHhh---------hcCCceEEEE-cCCCCCCHHHHhccCCCceEEEEcC
Q 007512 67 LGQAGLDLLNEFA-NVDCA------YNLSPEELCT---------KISLCDALIV-RSGTKVNRDVFESSAGRLKVVGRAG 129 (600)
Q Consensus 67 l~~~~~~~l~~~~-~v~~~------~~~~~~el~~---------~i~~~d~li~-~~~~~~~~~~l~~~~~~Lk~I~~~g 129 (600)
+.|+..+.|.+.+ +|.+. ..++.++..+ .+.++|.++- .. .+.+-++.++++-.+++...
T Consensus 43 ltP~~v~~L~~~G~~V~VE~gaG~~~~f~D~~Y~~aGa~i~~~~~~~~adiIlkVk~---p~~~e~~~l~~g~~l~~~lh 119 (405)
T 4dio_A 43 GSVESVKKLKSLGFDVVVEAGAGLGSRIPDQEYEKAGARVGTAADAKTADVILKVRR---PSAQEISGYRSGAVVIAIMD 119 (405)
T ss_dssp CCHHHHHHHHHTTCEEEEETTTTGGGTCCHHHHHHTTCEEECGGGGGGCSEEEEEEC---CCTTTGGGSCTTCEEEEECC
T ss_pred CCHHHHHHHHhCCCEEEEeCCCCccCCCCHHHHHHcCCEEchHHhhccCCEEEEeCC---CChhHHhhcCCCcEEEEEec
Confidence 5677777776554 55442 2344444422 1345787663 32 23344555656677777655
Q ss_pred cccCccChhHHHhCCceeecCCCCC------h----HHHHHHHHHHHHHHHhchHHHHHHHHcCccccccccc-eeccCC
Q 007512 130 VGIDNVDLAAATEFGCLVVNAPTAN------T----VAAAEHGIALLAAMARNVAQADASVKAGKWQRNKYVG-VSLVGK 198 (600)
Q Consensus 130 ~G~d~iD~~aa~~~GI~V~n~p~~~------~----~~vAE~~l~lll~~~R~i~~~~~~~~~g~W~~~~~~g-~~l~gk 198 (600)
..-|.=-++++.++||...---... . .+++|.+= .+-+..+... -++.......+ ..+.+.
T Consensus 120 ~~~~~~l~~~l~~~~it~ia~E~i~r~~ra~~l~~ls~~s~iAG------y~Av~~aa~~--l~~~~~~l~t~~g~v~~~ 191 (405)
T 4dio_A 120 PYGNEEAISAMAGAGLTTFAMELMPRITRAQSMDVLSSQANLAG------YQAVIDAAYE--YDRALPMMMTAAGTVPAA 191 (405)
T ss_dssp CTTCHHHHHHHHHTTCEEEEGGGSCCSGGGGGGCHHHHHHHHHH------HHHHHHHHHH--CSSCSSCEEETTEEECCC
T ss_pred cccCHHHHHHHHHCCCeEEEeeccccccccCccceecchhHHHH------HHHHHHHHHH--hHhhhchhhccCCCcCCC
Confidence 5444444688899999885322111 1 11222221 1111111111 11111111111 257899
Q ss_pred EEEEEecChhHHHHHHHhhcCCCEEEEECCCCC-hhHHHHcCCccc------------------------------CHHH
Q 007512 199 TLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAP-ADRARAIGVDLV------------------------------SFDE 247 (600)
Q Consensus 199 tiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~-~~~a~~~g~~~~------------------------------~l~e 247 (600)
+|+|+|+|.||..+|+.++++|++|++||++.. .+.+.+.|..++ ++++
T Consensus 192 kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~~~G~~~~~~~~~~~~d~~~~~~ya~e~s~~~~~~~~~~l~e 271 (405)
T 4dio_A 192 KIFVMGAGVAGLQAIATARRLGAVVSATDVRPAAKEQVASLGAKFIAVEDEEFKAAETAGGYAKEMSGEYQVKQAALVAE 271 (405)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEECSSTTHHHHHHHTTCEECCCCC-----------------CHHHHHHHHHHHH
T ss_pred EEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHcCCceeecccccccccccccchhhhcchhhhhhhHhHHHH
Confidence 999999999999999999999999999999884 355666665421 4678
Q ss_pred HhccCCEEEEec--CCCccccccccHhHhccCCCceEEEEcc--CCccc
Q 007512 248 AIATADFISLHM--PLTPATSKVLNDETFGKMKKGVRIINVA--RGGVI 292 (600)
Q Consensus 248 ll~~aDvV~l~~--Pl~~~t~~li~~~~l~~mk~gailvNva--rg~iv 292 (600)
++++||+|+.++ |.. ....+++++.++.||||++|||++ +|+.+
T Consensus 272 ~l~~aDVVI~tvlipg~-~ap~Lvt~emv~~Mk~GsVIVDvA~d~GG~~ 319 (405)
T 4dio_A 272 HIAKQDIVITTALIPGR-PAPRLVTREMLDSMKPGSVVVDLAVERGGNI 319 (405)
T ss_dssp HHHTCSEEEECCCCSSS-CCCCCBCHHHHTTSCTTCEEEETTGGGTCSB
T ss_pred HhcCCCEEEECCcCCCC-CCCEEecHHHHhcCCCCCEEEEEeCCCCCCc
Confidence 899999999875 532 467889999999999999999998 66654
|
| >3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=99.12 E-value=9.8e-11 Score=120.58 Aligned_cols=108 Identities=22% Similarity=0.242 Sum_probs=91.1
Q ss_pred CCEEEEEecChhHHHHHHHhhcCCCEEEEECCCC-ChhHHHHcCCccc-CHHHHhccCCEEEEecCCCccccccccHhHh
Q 007512 197 GKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYA-PADRARAIGVDLV-SFDEAIATADFISLHMPLTPATSKVLNDETF 274 (600)
Q Consensus 197 gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~-~~~~a~~~g~~~~-~l~ell~~aDvV~l~~Pl~~~t~~li~~~~l 274 (600)
.++|||||+|.||..+|+.|...|++|.+||++. ..+...+.|+... +++++++ ||+|++|+|....++.++ +..+
T Consensus 15 ~~~I~vIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~-aDvvi~~vp~~~~~~~v~-~~l~ 92 (296)
T 3qha_A 15 QLKLGYIGLGNMGAPMATRMTEWPGGVTVYDIRIEAMTPLAEAGATLADSVADVAA-ADLIHITVLDDAQVREVV-GELA 92 (296)
T ss_dssp CCCEEEECCSTTHHHHHHHHTTSTTCEEEECSSTTTSHHHHHTTCEECSSHHHHTT-SSEEEECCSSHHHHHHHH-HHHH
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHCCCEEcCCHHHHHh-CCEEEEECCChHHHHHHH-HHHH
Confidence 3689999999999999999999999999999987 4456667787654 8999999 999999999666666666 5667
Q ss_pred ccCCCceEEEEccCCccccHHHHHHhHhcCCc
Q 007512 275 GKMKKGVRIINVARGGVIDEEALVRALDSGRV 306 (600)
Q Consensus 275 ~~mk~gailvNvarg~ivde~aL~~aL~~g~i 306 (600)
..++++.++||+++......+.+.+.+.+..+
T Consensus 93 ~~l~~g~ivv~~st~~~~~~~~~~~~~~~~g~ 124 (296)
T 3qha_A 93 GHAKPGTVIAIHSTISDTTAVELARDLKARDI 124 (296)
T ss_dssp TTCCTTCEEEECSCCCHHHHHHHHHHHGGGTC
T ss_pred HhcCCCCEEEEeCCCCHHHHHHHHHHHHHcCC
Confidence 78999999999999988888888888876544
|
| >1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.12 E-value=1.7e-11 Score=128.84 Aligned_cols=136 Identities=21% Similarity=0.263 Sum_probs=99.1
Q ss_pred eeccCCEEEEEecChhHHHHHHHhhcCCCEEEEECCCCC--hhHHHHcCCcccCHHHHhccCCEEEEecCCCcccccccc
Q 007512 193 VSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAP--ADRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVLN 270 (600)
Q Consensus 193 ~~l~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~--~~~a~~~g~~~~~l~ell~~aDvV~l~~Pl~~~t~~li~ 270 (600)
..+.+++|||||+|.||+++|+.|+..|++|++||++.. .+.+.+.|+...++++++++||+|++|+|... ...++.
T Consensus 12 ~~l~~~~I~IIG~G~mG~alA~~L~~~G~~V~~~~~~~~~~~~~a~~~G~~~~~~~e~~~~aDvVilavp~~~-~~~v~~ 90 (338)
T 1np3_A 12 SIIQGKKVAIIGYGSQGHAHACNLKDSGVDVTVGLRSGSATVAKAEAHGLKVADVKTAVAAADVVMILTPDEF-QGRLYK 90 (338)
T ss_dssp HHHHTSCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHTTCEEECHHHHHHTCSEEEECSCHHH-HHHHHH
T ss_pred chhcCCEEEEECchHHHHHHHHHHHHCcCEEEEEECChHHHHHHHHHCCCEEccHHHHHhcCCEEEEeCCcHH-HHHHHH
Confidence 468899999999999999999999999999999998864 35566778876689999999999999999543 455555
Q ss_pred HhHhccCCCceEEEEccCCccccHHHHHHhHhcCCceEEEEeccCCCCCCCC---Ccccc---CCcEEEcCCCC
Q 007512 271 DETFGKMKKGVRIINVARGGVIDEEALVRALDSGRVAQAALDVFTEEPPPAD---SKLVQ---HERVTVTPHLG 338 (600)
Q Consensus 271 ~~~l~~mk~gailvNvarg~ivde~aL~~aL~~g~i~ga~lDv~~~EP~~~~---~~L~~---~~nvilTPH~~ 338 (600)
++....|++|++|++++ + +.. ....+. .+.+.|++...|..+. ..|++ ..++++|||..
T Consensus 91 ~~i~~~l~~~~ivi~~~--g-v~~--~~~~~~----~~~~~~vv~~~P~gp~~a~~~l~~~G~g~~~ii~~~~~ 155 (338)
T 1np3_A 91 EEIEPNLKKGATLAFAH--G-FSI--HYNQVV----PRADLDVIMIAPKAPGHTVRSEFVKGGGIPDLIAIYQD 155 (338)
T ss_dssp HHTGGGCCTTCEEEESC--C-HHH--HTTSSC----CCTTCEEEEEEESSCSHHHHHHHHTTCCCCEEEEEEEC
T ss_pred HHHHhhCCCCCEEEEcC--C-chh--HHHhhc----CCCCcEEEeccCCCCchhHHHHHhccCCCeEEEEecCC
Confidence 35556799999999984 2 232 222221 1223455555553333 24666 78899999864
|
| >4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=99.11 E-value=1.7e-10 Score=122.22 Aligned_cols=121 Identities=13% Similarity=0.201 Sum_probs=97.5
Q ss_pred ccCCEEEEEecChhHHHHHHHhhcCCCEEEEECCCC-ChhHHHHcCCccc-CHHHHhccC---CEEEEecCCCccccccc
Q 007512 195 LVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYA-PADRARAIGVDLV-SFDEAIATA---DFISLHMPLTPATSKVL 269 (600)
Q Consensus 195 l~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~-~~~~a~~~g~~~~-~l~ell~~a---DvV~l~~Pl~~~t~~li 269 (600)
+.+++|||||+|.||+.+|+.|...|++|.+||++. ..+.+.+.|+... ++++++++| |+|++|+|.. .+..++
T Consensus 20 m~~mkIgiIGlG~mG~~~A~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~a~~~DvVi~~vp~~-~v~~vl 98 (358)
T 4e21_A 20 FQSMQIGMIGLGRMGADMVRRLRKGGHECVVYDLNVNAVQALEREGIAGARSIEEFCAKLVKPRVVWLMVPAA-VVDSML 98 (358)
T ss_dssp --CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTTCBCCSSHHHHHHHSCSSCEEEECSCGG-GHHHHH
T ss_pred hcCCEEEEECchHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHCCCEEeCCHHHHHhcCCCCCEEEEeCCHH-HHHHHH
Confidence 457899999999999999999999999999999886 3344555677654 899999999 9999999966 666666
Q ss_pred cHhHhccCCCceEEEEccCCccccHHHHHHhHhcCCceEEEEeccCCC
Q 007512 270 NDETFGKMKKGVRIINVARGGVIDEEALVRALDSGRVAQAALDVFTEE 317 (600)
Q Consensus 270 ~~~~l~~mk~gailvNvarg~ivde~aL~~aL~~g~i~ga~lDv~~~E 317 (600)
...+..+++|.+|||++++...+...+.+.+.+..+......|++.+
T Consensus 99 -~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~vdapVsGg~ 145 (358)
T 4e21_A 99 -QRMTPLLAANDIVIDGGNSHYQDDIRRADQMRAQGITYVDVGTSGGI 145 (358)
T ss_dssp -HHHGGGCCTTCEEEECSSCCHHHHHHHHHHHHTTTCEEEEEEEECGG
T ss_pred -HHHHhhCCCCCEEEeCCCCChHHHHHHHHHHHHCCCEEEeCCCCCCH
Confidence 45677799999999999999888888888888876644444566554
|
| >3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=2.8e-10 Score=124.14 Aligned_cols=152 Identities=20% Similarity=0.261 Sum_probs=111.5
Q ss_pred CceEEE-EcCcccCccC-hhHHHhCCceeecCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCccccccccceeccCC
Q 007512 121 RLKVVG-RAGVGIDNVD-LAAATEFGCLVVNAPTANTVAAAEHGIALLAAMARNVAQADASVKAGKWQRNKYVGVSLVGK 198 (600)
Q Consensus 121 ~Lk~I~-~~g~G~d~iD-~~aa~~~GI~V~n~p~~~~~~vAE~~l~lll~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gk 198 (600)
+++-+. -.++|+..+. +.+..+..|+|+|+.+..+....+...+.-- ++..+-|. ..+..+.||
T Consensus 201 ~i~G~~EeTttGv~rL~~~~~~g~L~iPvinvnDs~tK~~fDn~yGt~~-----------sl~dgi~r---~tg~~L~GK 266 (488)
T 3ond_A 201 RVVGVSEETTTGVKRLYQMQANGTLLFPAINVNDSVTKSKFDNLYGCRH-----------SLPDGLMR---ATDVMIAGK 266 (488)
T ss_dssp HCCEEEECSHHHHHHHHHHHHTTCCCSCEEECTTSHHHHTTHHHHHHHH-----------HHHHHHHH---HHCCCCTTC
T ss_pred hcceeEecccccHHHHHHHHHcCCCCCceecccchhhhhHhhhhccccH-----------HHHHHHHH---HcCCcccCC
Confidence 344443 3577887653 2333457799999987666553332222111 11112121 245679999
Q ss_pred EEEEEecChhHHHHHHHhhcCCCEEEEECCCC-ChhHHHHcCCcccCHHHHhccCCEEEEecCCCccccccccHhHhccC
Q 007512 199 TLAVLGFGKVGSEVARRAKGLGMHVIAHDPYA-PADRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVLNDETFGKM 277 (600)
Q Consensus 199 tiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~-~~~~a~~~g~~~~~l~ell~~aDvV~l~~Pl~~~t~~li~~~~l~~m 277 (600)
+++|+|+|.||+.+|++|+++|++|+++|++. ....+...|+...++++++..+|+|+.+.. +.++++.+.+..|
T Consensus 267 tVvVtGaGgIG~aiA~~Laa~GA~Viv~D~~~~~a~~Aa~~g~dv~~lee~~~~aDvVi~atG----~~~vl~~e~l~~m 342 (488)
T 3ond_A 267 VAVVAGYGDVGKGCAAALKQAGARVIVTEIDPICALQATMEGLQVLTLEDVVSEADIFVTTTG----NKDIIMLDHMKKM 342 (488)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECCGGGTTTTCSEEEECSS----CSCSBCHHHHTTS
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHhCCccCCHHHHHHhcCEEEeCCC----ChhhhhHHHHHhc
Confidence 99999999999999999999999999999876 344566778877889999999999998653 5678899899999
Q ss_pred CCceEEEEccCCc
Q 007512 278 KKGVRIINVARGG 290 (600)
Q Consensus 278 k~gailvNvarg~ 290 (600)
|++++|+|+|++.
T Consensus 343 k~gaiVvNaG~~~ 355 (488)
T 3ond_A 343 KNNAIVCNIGHFD 355 (488)
T ss_dssp CTTEEEEESSSTT
T ss_pred CCCeEEEEcCCCC
Confidence 9999999999974
|
| >2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=4.7e-11 Score=120.81 Aligned_cols=176 Identities=16% Similarity=0.148 Sum_probs=123.2
Q ss_pred CCCHhHHhhhcCC----ceEEEEcCCCCCCHHHHhccCCCceEEEEcCcccCccChhHHHhCCceeecCCCCChHHHHHH
Q 007512 86 NLSPEELCTKISL----CDALIVRSGTKVNRDVFESSAGRLKVVGRAGVGIDNVDLAAATEFGCLVVNAPTANTVAAAEH 161 (600)
Q Consensus 86 ~~~~~el~~~i~~----~d~li~~~~~~~~~~~l~~~~~~Lk~I~~~g~G~d~iD~~aa~~~GI~V~n~p~~~~~~vAE~ 161 (600)
..+++++.+.+.+ ++++.+. .|+.++++..+ +.|.-+++...|+|.++. +.| +..|+|+..
T Consensus 37 ~~~~~~l~~~i~~l~~~~~G~~vt--~P~k~~i~~~~-~~l~~~a~~~gavn~i~~----~~g----~~~g~ntd~---- 101 (263)
T 2d5c_A 37 DTPLEALPGRLKEVRRAFRGVNLT--LPLKEAALAHL-DWVSPEAQRIGAVNTVLQ----VEG----RLFGFNTDA---- 101 (263)
T ss_dssp ECCGGGHHHHHHHHHHHCSEEEEC--TTCTTGGGGGC-SEECHHHHHHTCCCEEEE----ETT----EEEEECCHH----
T ss_pred eCCHHHHHHHHHhccccCceEEEc--ccCHHHHHHHH-HHHhHHHHHhCCCCcEEc----cCC----eEEEeCCCH----
Confidence 4466666665543 4555553 46778888887 588888999999999976 344 234566654
Q ss_pred HHHHHHHHHhchHHHHHHHHcCccccccccceeccCCEEEEEecChhHHHHHHHhhcCCCEEEEECCCCCh--hHHHHcC
Q 007512 162 GIALLAAMARNVAQADASVKAGKWQRNKYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPA--DRARAIG 239 (600)
Q Consensus 162 ~l~lll~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~~--~~a~~~g 239 (600)
.+++.++.| .+.++.| +++|||+|.+|+.+|+.|...|++|.+||++... ..+...|
T Consensus 102 -~g~~~~l~~-------------------~~~~l~~-~v~iiG~G~~g~~~a~~l~~~g~~v~v~~r~~~~~~~l~~~~~ 160 (263)
T 2d5c_A 102 -PGFLEALKA-------------------GGIPLKG-PALVLGAGGAGRAVAFALREAGLEVWVWNRTPQRALALAEEFG 160 (263)
T ss_dssp -HHHHHHHHH-------------------TTCCCCS-CEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHT
T ss_pred -HHHHHHHHH-------------------hCCCCCC-eEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhc
Confidence 244444433 1347889 9999999999999999999999999999987522 2233445
Q ss_pred CcccCHHHHhccCCEEEEecCCCc--cccccccHhHhccCCCceEEEEccCCccccHHHHHHhHhc
Q 007512 240 VDLVSFDEAIATADFISLHMPLTP--ATSKVLNDETFGKMKKGVRIINVARGGVIDEEALVRALDS 303 (600)
Q Consensus 240 ~~~~~l~ell~~aDvV~l~~Pl~~--~t~~li~~~~l~~mk~gailvNvarg~ivde~aL~~aL~~ 303 (600)
....+++++ +++|+|++|+|... .+...+. ...+++|.+++|++.+.. +. .+.++.++
T Consensus 161 ~~~~~~~~~-~~~Divi~~tp~~~~~~~~~~l~---~~~l~~g~~viD~~~~p~-~t-~l~~~a~~ 220 (263)
T 2d5c_A 161 LRAVPLEKA-REARLLVNATRVGLEDPSASPLP---AELFPEEGAAVDLVYRPL-WT-RFLREAKA 220 (263)
T ss_dssp CEECCGGGG-GGCSEEEECSSTTTTCTTCCSSC---GGGSCSSSEEEESCCSSS-SC-HHHHHHHH
T ss_pred cchhhHhhc-cCCCEEEEccCCCCCCCCCCCCC---HHHcCCCCEEEEeecCCc-cc-HHHHHHHH
Confidence 555578888 99999999999762 2323443 456899999999998743 32 35555544
|
| >3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=99.09 E-value=1.3e-10 Score=118.85 Aligned_cols=109 Identities=14% Similarity=0.176 Sum_probs=90.1
Q ss_pred CEEEEEecChhHHHHHHHhhcCCCEEEEECCCC-ChhHHHHcCCccc-CHHHHhccCCEEEEecCCCcccccccc--HhH
Q 007512 198 KTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYA-PADRARAIGVDLV-SFDEAIATADFISLHMPLTPATSKVLN--DET 273 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~-~~~~a~~~g~~~~-~l~ell~~aDvV~l~~Pl~~~t~~li~--~~~ 273 (600)
++|||||+|.||+.+|+.|...|++|.+||++. ..+...+.|+... ++++++++||+|++|+|....++.++. +..
T Consensus 2 ~~i~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~aDvvi~~vp~~~~~~~v~~~~~~l 81 (287)
T 3pef_A 2 QKFGFIGLGIMGSAMAKNLVKAGCSVTIWNRSPEKAEELAALGAERAATPCEVVESCPVTFAMLADPAAAEEVCFGKHGV 81 (287)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGGGGHHHHHTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTCH
T ss_pred CEEEEEeecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCeecCCHHHHHhcCCEEEEEcCCHHHHHHHHcCcchH
Confidence 689999999999999999999999999999987 4455666677654 899999999999999996556666652 445
Q ss_pred hccCCCceEEEEccCCccccHHHHHHhHhcCCc
Q 007512 274 FGKMKKGVRIINVARGGVIDEEALVRALDSGRV 306 (600)
Q Consensus 274 l~~mk~gailvNvarg~ivde~aL~~aL~~g~i 306 (600)
+..+++|.++||+++....+...+.+.+++..+
T Consensus 82 ~~~l~~~~~vi~~st~~~~~~~~~~~~~~~~g~ 114 (287)
T 3pef_A 82 LEGIGEGRGYVDMSTVDPATSQRIGVAVVAKGG 114 (287)
T ss_dssp HHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTC
T ss_pred hhcCCCCCEEEeCCCCCHHHHHHHHHHHHHhCC
Confidence 667899999999999888778888877776544
|
| >3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.07 E-value=1.7e-10 Score=119.06 Aligned_cols=111 Identities=19% Similarity=0.191 Sum_probs=89.7
Q ss_pred cCCEEEEEecChhHHHHHHHhhcCCCEEEEECCCC-ChhHHHHcCCcc--cCHHHHhccCCEEEEecCCCcccccccc--
Q 007512 196 VGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYA-PADRARAIGVDL--VSFDEAIATADFISLHMPLTPATSKVLN-- 270 (600)
Q Consensus 196 ~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~-~~~~a~~~g~~~--~~l~ell~~aDvV~l~~Pl~~~t~~li~-- 270 (600)
..++|||||+|.||..+|+.|...|++|.+||++. ..+...+.|... .++++++++||+|++|+|.....+.++.
T Consensus 6 ~~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~e~~~~aDvvi~~vp~~~~~~~v~~~~ 85 (303)
T 3g0o_A 6 TDFHVGIVGLGSMGMGAARSCLRAGLSTWGADLNPQACANLLAEGACGAAASAREFAGVVDALVILVVNAAQVRQVLFGE 85 (303)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCSEEESSSTTTTTTCSEEEECCSSHHHHHHHHC--
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHcCCccccCCHHHHHhcCCEEEEECCCHHHHHHHHhCh
Confidence 34689999999999999999999999999999886 334555667754 4889999999999999996555666542
Q ss_pred HhHhccCCCceEEEEccCCccccHHHHHHhHhcCCc
Q 007512 271 DETFGKMKKGVRIINVARGGVIDEEALVRALDSGRV 306 (600)
Q Consensus 271 ~~~l~~mk~gailvNvarg~ivde~aL~~aL~~g~i 306 (600)
+..+..+++|.++||+++........+.+.+.+..+
T Consensus 86 ~~l~~~l~~g~ivv~~st~~~~~~~~~~~~~~~~g~ 121 (303)
T 3g0o_A 86 DGVAHLMKPGSAVMVSSTISSADAQEIAAALTALNL 121 (303)
T ss_dssp CCCGGGSCTTCEEEECSCCCHHHHHHHHHHHHTTTC
T ss_pred hhHHhhCCCCCEEEecCCCCHHHHHHHHHHHHHcCC
Confidence 445567899999999999888778888887777544
|
| >3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens} | Back alignment and structure |
|---|
Probab=99.05 E-value=2e-10 Score=117.39 Aligned_cols=109 Identities=18% Similarity=0.176 Sum_probs=89.4
Q ss_pred CEEEEEecChhHHHHHHHhhcCCCEEEEECCCC-ChhHHHHcCCccc-CHHHHhccCCEEEEecCCCcccccccc--HhH
Q 007512 198 KTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYA-PADRARAIGVDLV-SFDEAIATADFISLHMPLTPATSKVLN--DET 273 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~-~~~~a~~~g~~~~-~l~ell~~aDvV~l~~Pl~~~t~~li~--~~~ 273 (600)
++|||||+|.||..+|+.|...|++|.+||++. ..+...+.|+... ++++++++||+|++|+|..+.++.++. +..
T Consensus 2 ~~I~iiG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~advvi~~v~~~~~~~~v~~~~~~l 81 (287)
T 3pdu_A 2 TTYGFLGLGIMGGPMAANLVRAGFDVTVWNRNPAKCAPLVALGARQASSPAEVCAACDITIAMLADPAAAREVCFGANGV 81 (287)
T ss_dssp CCEEEECCSTTHHHHHHHHHHHTCCEEEECSSGGGGHHHHHHTCEECSCHHHHHHHCSEEEECCSSHHHHHHHHHSTTCG
T ss_pred CeEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCeecCCHHHHHHcCCEEEEEcCCHHHHHHHHcCchhh
Confidence 479999999999999999999999999999987 3455556677654 899999999999999996656666552 345
Q ss_pred hccCCCceEEEEccCCccccHHHHHHhHhcCCc
Q 007512 274 FGKMKKGVRIINVARGGVIDEEALVRALDSGRV 306 (600)
Q Consensus 274 l~~mk~gailvNvarg~ivde~aL~~aL~~g~i 306 (600)
+..+++|.++||++++.....+.+.+.+.+..+
T Consensus 82 ~~~l~~g~~vv~~st~~~~~~~~~~~~~~~~g~ 114 (287)
T 3pdu_A 82 LEGIGGGRGYIDMSTVDDETSTAIGAAVTARGG 114 (287)
T ss_dssp GGTCCTTCEEEECSCCCHHHHHHHHHHHHHTTC
T ss_pred hhcccCCCEEEECCCCCHHHHHHHHHHHHHcCC
Confidence 667899999999999988778888777776533
|
| >2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A | Back alignment and structure |
|---|
Probab=98.98 E-value=3.3e-10 Score=115.59 Aligned_cols=165 Identities=17% Similarity=0.196 Sum_probs=116.0
Q ss_pred CCCHhHHhhhc-----CCceEEEEcCCCCCCHHHHhccCCCceEEEEcCcccCccChhHHHhCCceeecCCCCChHHHHH
Q 007512 86 NLSPEELCTKI-----SLCDALIVRSGTKVNRDVFESSAGRLKVVGRAGVGIDNVDLAAATEFGCLVVNAPTANTVAAAE 160 (600)
Q Consensus 86 ~~~~~el~~~i-----~~~d~li~~~~~~~~~~~l~~~~~~Lk~I~~~g~G~d~iD~~aa~~~GI~V~n~p~~~~~~vAE 160 (600)
..+++++.+.+ .+++++.+. .|..++++..+ +.+.-.++...++|.++. +.|-. .|+|+...
T Consensus 48 ~~~~~~l~~~i~~l~~~~~~G~nvt--iP~k~~i~~~l-d~l~~~A~~~gavnti~~----~~g~~----~g~nTd~~-- 114 (275)
T 2hk9_A 48 EINPEELKKAFEGFKALKVKGINVT--VPFKEEIIPLL-DYVEDTAKEIGAVNTVKF----ENGKA----YGYNTDWI-- 114 (275)
T ss_dssp ECCGGGHHHHHHHHHHHTCCEEEEC--TTSTTTTGGGC-SEECHHHHHHTCCCEEEE----ETTEE----EEECCHHH--
T ss_pred ECCHHHHHHHHHHHHhCCCCEEEEC--ccCHHHHHHHH-HHhhHHHHHhCCcceEEe----eCCEE----EeecCCHH--
Confidence 45566665544 257888885 46777788877 478778888888888865 34522 35666443
Q ss_pred HHHHHHHHHHhchHHHHHHHHcCccccccccceeccCCEEEEEecChhHHHHHHHhhcCCCEEEEECCCCCh-h-HHHHc
Q 007512 161 HGIALLAAMARNVAQADASVKAGKWQRNKYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPA-D-RARAI 238 (600)
Q Consensus 161 ~~l~lll~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~~-~-~a~~~ 238 (600)
+++.++.| .+.++.|++++|||.|.+|+.+|+.|...|++|.+||++... + .+...
T Consensus 115 ---G~~~~l~~-------------------~~~~~~~~~v~iiGaG~~g~aia~~L~~~g~~V~v~~r~~~~~~~l~~~~ 172 (275)
T 2hk9_A 115 ---GFLKSLKS-------------------LIPEVKEKSILVLGAGGASRAVIYALVKEGAKVFLWNRTKEKAIKLAQKF 172 (275)
T ss_dssp ---HHHHHHHH-------------------HCTTGGGSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSHHHHHHHTTTS
T ss_pred ---HHHHHHHH-------------------hCCCcCCCEEEEECchHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHc
Confidence 44444432 134678999999999999999999999889999999987522 1 12233
Q ss_pred CCccc-CHHHHhccCCEEEEecCCCc--cccccccHhHhccCCCceEEEEccC
Q 007512 239 GVDLV-SFDEAIATADFISLHMPLTP--ATSKVLNDETFGKMKKGVRIINVAR 288 (600)
Q Consensus 239 g~~~~-~l~ell~~aDvV~l~~Pl~~--~t~~li~~~~l~~mk~gailvNvar 288 (600)
|+... ++++++++||+|++|+|... ++...++ +..++++.+++|++.
T Consensus 173 g~~~~~~~~~~~~~aDiVi~atp~~~~~~~~~~i~---~~~l~~g~~viDv~~ 222 (275)
T 2hk9_A 173 PLEVVNSPEEVIDKVQVIVNTTSVGLKDEDPEIFN---YDLIKKDHVVVDIIY 222 (275)
T ss_dssp CEEECSCGGGTGGGCSEEEECSSTTSSTTCCCSSC---GGGCCTTSEEEESSS
T ss_pred CCeeehhHHhhhcCCCEEEEeCCCCCCCCCCCCCC---HHHcCCCCEEEEcCC
Confidence 44443 78889999999999999764 2223343 455899999999988
|
| >2iaf_A Hypothetical protein SDHL; MCSG, PSI2, MAD, structural genomics, L-serine dehydratase, structure initiative; 2.05A {Legionella pneumophila} SCOP: d.81.2.1 PDB: 2iqq_A | Back alignment and structure |
|---|
Probab=98.94 E-value=5.7e-10 Score=103.32 Aligned_cols=113 Identities=13% Similarity=0.001 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHHHHhcCC---CCceEEEEEEeecCCCCccccccccHHHHHhhchhhhccchh----------hccH--H
Q 007512 386 VELAEKLGRLAVQLVAGG---SGVKTVKVSYASSRAPDDLDTRLLRAMITKGLIEPISDVFVN----------LVNA--D 450 (600)
Q Consensus 386 ~~la~~lG~l~~qL~~g~---~~~k~v~i~~~Gs~a~~~~~~~~~~~a~l~GlL~~~~~~~vn----------~vnA--~ 450 (600)
-.=+.|+|+++++++... ..++++++.++|||+ .|+++|++|+|++.||++ +.+++++ +.++ +
T Consensus 10 T~Gpmraa~~f~~~l~~~~~l~~~~~v~v~LyGSla-~TgkGHgTD~Aii~GL~G-~~pd~~~~~~~~~~~~~i~~~~~l 87 (151)
T 2iaf_A 10 TVGPMLAANAFLQLLEQKNLFDKTQRVKVELYGSLA-LTGKGHGTDKAILNGLEN-KAPETVDPASMIPRMHEILDSNLL 87 (151)
T ss_dssp SHHHHHHHHHHHHHHHHTTCTTTCCEEEEEEEHHHH-HTCTTSSHHHHHHHHTTT-CCCC-----CHHHHHHHHHHHTEE
T ss_pred HHHHHHHHHHHHHHHhhccccCCCcEEEEEEEchHH-hhCCCccccHHHHhhhcC-CCCCccChhhhHHHHHHHHhcCcc
Confidence 344568898888888521 158999999999999 999999999999999994 4555565 4444 3
Q ss_pred HHHhhcCceEE------EEEeecCCCCCCCCceEEEEEeecccccccccCCCcE-EEEEE-EEeCCceEE
Q 007512 451 YTAKQRGLRLT------EERILLDGSPESPLEFIQVQIANVESKFASAISESGE-IKVEG-RVKDGVPHL 512 (600)
Q Consensus 451 ~~A~e~GI~v~------~~~~~~~~~~~~~~n~i~v~~~~~~~~~~~~~~~~~~-~~v~G-sv~gG~~~I 512 (600)
.+|.+++|.+. |.....- ..|||++++++.+ .++.. .++++ ||+||.++.
T Consensus 88 ~la~~~~i~f~~~~di~f~~~~~l---p~HpN~m~~~a~~---------~~g~~l~~~~~ySIGGGfI~~ 145 (151)
T 2iaf_A 88 NLAGKKEIPFHEATDFLFLQKELL---PKHSNGMRFSAFD---------GNANLLIEQVYYSIGGGFITT 145 (151)
T ss_dssp EETTTEEEECCHHHHEEEETTCCC---SSCSSEEEEEEEC---------TTSCEEEEEEEEECSSSCEEE
T ss_pred ccCCcceeEEccccceeEcCCCCC---CCCCCeeEEEEEe---------CCCCEEEEEEEEEeCCceEEE
Confidence 46777777664 3222111 1699999999984 34444 48999 788887653
|
| >1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=98.89 E-value=5.5e-09 Score=107.59 Aligned_cols=126 Identities=15% Similarity=0.185 Sum_probs=86.0
Q ss_pred cCCEEEEEecChhHHHHHHHhhcCCCEEEEECCCC-ChhHHHHc-------CCcc-cCHHHHhccCCEEEEecCCCcccc
Q 007512 196 VGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYA-PADRARAI-------GVDL-VSFDEAIATADFISLHMPLTPATS 266 (600)
Q Consensus 196 ~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~-~~~~a~~~-------g~~~-~~l~ell~~aDvV~l~~Pl~~~t~ 266 (600)
+-|+|||||+|.||+++|..+. .|++|++||++. ..+.+.+. ++.. .++++ +++||+|+.|+|...+.+
T Consensus 11 ~~~~V~vIG~G~MG~~iA~~la-aG~~V~v~d~~~~~~~~~~~~l~~~~~~~i~~~~~~~~-~~~aDlVieavpe~~~vk 88 (293)
T 1zej_A 11 HHMKVFVIGAGLMGRGIAIAIA-SKHEVVLQDVSEKALEAAREQIPEELLSKIEFTTTLEK-VKDCDIVMEAVFEDLNTK 88 (293)
T ss_dssp -CCEEEEECCSHHHHHHHHHHH-TTSEEEEECSCHHHHHHHHHHSCGGGGGGEEEESSCTT-GGGCSEEEECCCSCHHHH
T ss_pred CCCeEEEEeeCHHHHHHHHHHH-cCCEEEEEECCHHHHHHHHHHHHHHHhCCeEEeCCHHH-HcCCCEEEEcCcCCHHHH
Confidence 4689999999999999999999 999999999986 33444444 4433 36766 899999999999887766
Q ss_pred ccccHhHhccCCCceEE-EEccCCccccHHHHHHhHhcCCceEEEEeccCCCCCCCCCccccCCcEEEcCCC
Q 007512 267 KVLNDETFGKMKKGVRI-INVARGGVIDEEALVRALDSGRVAQAALDVFTEEPPPADSKLVQHERVTVTPHL 337 (600)
Q Consensus 267 ~li~~~~l~~mk~gail-vNvarg~ivde~aL~~aL~~g~i~ga~lDv~~~EP~~~~~~L~~~~nvilTPH~ 337 (600)
..+-.+ ++.+ +++++ +|++.-.+ ..+.+++. ..-...|.+-|. |.+ . .+-+.++|+-
T Consensus 89 ~~l~~~-l~~~-~~~IlasntSti~~---~~~a~~~~-~~~r~~G~Hf~~--Pv~-~-----~~lveiv~g~ 146 (293)
T 1zej_A 89 VEVLRE-VERL-TNAPLCSNTSVISV---DDIAERLD-SPSRFLGVHWMN--PPH-V-----MPLVEIVISR 146 (293)
T ss_dssp HHHHHH-HHTT-CCSCEEECCSSSCH---HHHHTTSS-CGGGEEEEEECS--STT-T-----CCEEEEEECT
T ss_pred HHHHHH-HhcC-CCCEEEEECCCcCH---HHHHHHhh-cccceEeEEecC--ccc-c-----CCEEEEECCC
Confidence 555333 5667 99888 47776444 34443332 222235666665 432 2 3455577754
|
| >4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A | Back alignment and structure |
|---|
Probab=98.88 E-value=4.4e-09 Score=115.41 Aligned_cols=120 Identities=18% Similarity=0.203 Sum_probs=93.2
Q ss_pred CCEEEEEecChhHHHHHHHhhcCCCEEEEECCCCC-hhHHHHc---CCc---ccCHHHHhc---cCCEEEEecCCCcccc
Q 007512 197 GKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAP-ADRARAI---GVD---LVSFDEAIA---TADFISLHMPLTPATS 266 (600)
Q Consensus 197 gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~-~~~a~~~---g~~---~~~l~ell~---~aDvV~l~~Pl~~~t~ 266 (600)
.++|||||+|.||..+|++|...|++|.+||++.. .+...+. +.. ..+++++++ +||+|++++|..+.++
T Consensus 4 ~~kIgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~g~~i~~~~s~~e~v~~l~~aDvVil~Vp~~~~v~ 83 (484)
T 4gwg_A 4 QADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVVGAQSLKEMVSKLKKPRRIILLVKAGQAVD 83 (484)
T ss_dssp CBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHTTTTTSSCEECSSHHHHHHTBCSSCEEEECSCSSHHHH
T ss_pred CCEEEEEChhHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcccCCCceeccCCHHHHHhhccCCCEEEEecCChHHHH
Confidence 36899999999999999999999999999999873 3333333 222 247888876 5999999999776777
Q ss_pred ccccHhHhccCCCceEEEEccCCccccHHHHHHhHhcCCceEEEEeccCCC
Q 007512 267 KVLNDETFGKMKKGVRIINVARGGVIDEEALVRALDSGRVAQAALDVFTEE 317 (600)
Q Consensus 267 ~li~~~~l~~mk~gailvNvarg~ivde~aL~~aL~~g~i~ga~lDv~~~E 317 (600)
.++ ......|++|.+|||++++...+...+.+.+.+..+.....-|++.+
T Consensus 84 ~vl-~~l~~~L~~g~iIId~st~~~~~t~~~~~~l~~~Gi~fvd~pVsGg~ 133 (484)
T 4gwg_A 84 DFI-EKLVPLLDTGDIIIDGGNSEYRDTTRRCRDLKAKGILFVGSGVSGGE 133 (484)
T ss_dssp HHH-HHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEEESHH
T ss_pred HHH-HHHHHhcCCCCEEEEcCCCCchHHHHHHHHHHhhccccccCCccCCH
Confidence 777 55677899999999999999888888888887765543434455544
|
| >3fr7_A Putative ketol-acid reductoisomerase (OS05G057370 protein); rossmann fold, NADPH, knotted protein, branched-chain amino biosynthesis; 1.55A {Oryza sativa japonica group} PDB: 3fr8_A* 1qmg_A* 1yve_I* | Back alignment and structure |
|---|
Probab=98.88 E-value=1.2e-09 Score=118.27 Aligned_cols=96 Identities=21% Similarity=0.297 Sum_probs=77.2
Q ss_pred ceeccC-CEEEEEecChhHHHHHHHhhcC------CCEEEEE-CCCC-ChhHHHHcCCcc-----cCHHHHhccCCEEEE
Q 007512 192 GVSLVG-KTLAVLGFGKVGSEVARRAKGL------GMHVIAH-DPYA-PADRARAIGVDL-----VSFDEAIATADFISL 257 (600)
Q Consensus 192 g~~l~g-ktiGIIGlG~IG~~vA~~l~~~------g~~V~~~-d~~~-~~~~a~~~g~~~-----~~l~ell~~aDvV~l 257 (600)
...|.| |+|||||+|.||+++|+.|+.. |++|++. ++.. ..+.+.+.|+.. .++++++++||+|++
T Consensus 48 ~~~L~GiKkIgIIGlGsMG~AmA~nLr~s~~~~g~G~~ViVg~r~~sks~e~A~e~G~~v~d~ta~s~aEAa~~ADVVIL 127 (525)
T 3fr7_A 48 PEAFKGIKQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKIGLRKGSKSFDEARAAGFTEESGTLGDIWETVSGSDLVLL 127 (525)
T ss_dssp HHHTTTCSEEEEECCTTHHHHHHHHHHHHHHHTTCCCEEEEEECTTCSCHHHHHHTTCCTTTTCEEEHHHHHHHCSEEEE
T ss_pred hHHhcCCCEEEEEeEhHHHHHHHHHHHhcccccCCCCEEEEEeCCchhhHHHHHHCCCEEecCCCCCHHHHHhcCCEEEE
Confidence 467999 9999999999999999999987 9998754 4433 556778889874 589999999999999
Q ss_pred ecCCCccccccccHhHhccCCCceEEEEccCCc
Q 007512 258 HMPLTPATSKVLNDETFGKMKKGVRIINVARGG 290 (600)
Q Consensus 258 ~~Pl~~~t~~li~~~~l~~mk~gailvNvarg~ 290 (600)
++|.... ..++. +.+..||+|++| -.+.|-
T Consensus 128 aVP~~~~-~eVl~-eI~p~LK~GaIL-s~AaGf 157 (525)
T 3fr7_A 128 LISDAAQ-ADNYE-KIFSHMKPNSIL-GLSHGF 157 (525)
T ss_dssp CSCHHHH-HHHHH-HHHHHSCTTCEE-EESSSH
T ss_pred CCChHHH-HHHHH-HHHHhcCCCCeE-EEeCCC
Confidence 9997654 34665 678889999995 455553
|
| >1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6 | Back alignment and structure |
|---|
Probab=98.86 E-value=3e-09 Score=108.86 Aligned_cols=107 Identities=16% Similarity=0.272 Sum_probs=85.8
Q ss_pred CEEEEEecChhHHHHHHHhhcCCCEEEEECCCC-ChhHHHHcCCcc-cCHHHHhccCCEEEEecCCCcccccccc--HhH
Q 007512 198 KTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYA-PADRARAIGVDL-VSFDEAIATADFISLHMPLTPATSKVLN--DET 273 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~-~~~~a~~~g~~~-~~l~ell~~aDvV~l~~Pl~~~t~~li~--~~~ 273 (600)
++|+|||+|.||+.+|+.|...|++|.+||++. ..+...+.|+.. .+++++++++|+|++|+|....+..++. +..
T Consensus 6 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~D~vi~~v~~~~~~~~~~~~~~~l 85 (299)
T 1vpd_A 6 MKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIAAGAETASTAKAIAEQCDVIITMLPNSPHVKEVALGENGI 85 (299)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTCH
T ss_pred ceEEEECchHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHCCCeecCCHHHHHhCCCEEEEECCCHHHHHHHHhCcchH
Confidence 489999999999999999998899999999876 334445557754 4788999999999999996655565552 234
Q ss_pred hccCCCceEEEEccCCccccHHHHHHhHhcC
Q 007512 274 FGKMKKGVRIINVARGGVIDEEALVRALDSG 304 (600)
Q Consensus 274 l~~mk~gailvNvarg~ivde~aL~~aL~~g 304 (600)
...+++|.+|||++.+...+.+.+.+.+...
T Consensus 86 ~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~ 116 (299)
T 1vpd_A 86 IEGAKPGTVLIDMSSIAPLASREISDALKAK 116 (299)
T ss_dssp HHHCCTTCEEEECSCCCHHHHHHHHHHHHTT
T ss_pred hhcCCCCCEEEECCCCCHHHHHHHHHHHHHc
Confidence 4668999999999998876677888877764
|
| >3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP} | Back alignment and structure |
|---|
Probab=98.85 E-value=1.4e-09 Score=108.93 Aligned_cols=101 Identities=21% Similarity=0.265 Sum_probs=66.0
Q ss_pred ccccccccceeccCCEEEEEecChhHHHHHHHhhcCCCEEEEECCCCCh---------------hHH-HHcC-CcccCHH
Q 007512 184 KWQRNKYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPA---------------DRA-RAIG-VDLVSFD 246 (600)
Q Consensus 184 ~W~~~~~~g~~l~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~~---------------~~a-~~~g-~~~~~l~ 246 (600)
+|....+...++.+++|||||+|.||+.+|+.|...|++|++||++... ... ...+ ....++.
T Consensus 6 ~~~~~~~~~~~~~~~kIgiIG~G~mG~alA~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (245)
T 3dtt_A 6 IHHHHHHENLYFQGMKIAVLGTGTVGRTMAGALADLGHEVTIGTRDPKATLARAEPDAMGAPPFSQWLPEHPHVHLAAFA 85 (245)
T ss_dssp -------------CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHTCC-------CCHHHHGGGSTTCEEEEHH
T ss_pred ccccccccccccCCCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCChhhhhhhhhhhhhcchhhhHHHhhcCceeccCHH
Confidence 3444445678999999999999999999999999999999999987532 111 1223 2345789
Q ss_pred HHhccCCEEEEecCCCccccccccHhH-hccCCCceEEEEcc
Q 007512 247 EAIATADFISLHMPLTPATSKVLNDET-FGKMKKGVRIINVA 287 (600)
Q Consensus 247 ell~~aDvV~l~~Pl~~~t~~li~~~~-l~~mk~gailvNva 287 (600)
+++++||+|++|+|... ....+.. . ...+ ++.+|||++
T Consensus 86 e~~~~aDvVilavp~~~-~~~~~~~-i~~~~l-~g~ivi~~s 124 (245)
T 3dtt_A 86 DVAAGAELVVNATEGAS-SIAALTA-AGAENL-AGKILVDIA 124 (245)
T ss_dssp HHHHHCSEEEECSCGGG-HHHHHHH-HCHHHH-TTSEEEECC
T ss_pred HHHhcCCEEEEccCcHH-HHHHHHH-hhhhhc-CCCEEEECC
Confidence 99999999999999554 3333321 1 2224 799999999
|
| >1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=98.85 E-value=2.9e-09 Score=108.66 Aligned_cols=106 Identities=20% Similarity=0.259 Sum_probs=84.6
Q ss_pred CEEEEEecChhHHHHHHHhhcCCCEEEEECCCC-ChhHHHHcCCcc-cCHHHHhccCCEEEEecCCCccccccccH--hH
Q 007512 198 KTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYA-PADRARAIGVDL-VSFDEAIATADFISLHMPLTPATSKVLND--ET 273 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~-~~~~a~~~g~~~-~~l~ell~~aDvV~l~~Pl~~~t~~li~~--~~ 273 (600)
++|||||+|.||+.+|+.|...|++|.+|| +. ..+...+.|+.. .++++++++||+|++|+|....+..++.. ..
T Consensus 4 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~D~vi~~vp~~~~~~~v~~~~~~l 82 (295)
T 1yb4_A 4 MKLGFIGLGIMGSPMAINLARAGHQLHVTT-IGPVADELLSLGAVNVETARQVTEFADIIFIMVPDTPQVEDVLFGEHGC 82 (295)
T ss_dssp CEEEECCCSTTHHHHHHHHHHTTCEEEECC-SSCCCHHHHTTTCBCCSSHHHHHHTCSEEEECCSSHHHHHHHHHSTTSS
T ss_pred CEEEEEccCHHHHHHHHHHHhCCCEEEEEc-CHHHHHHHHHcCCcccCCHHHHHhcCCEEEEECCCHHHHHHHHhCchhH
Confidence 589999999999999999998999999999 66 344444557654 47889999999999999966555555532 34
Q ss_pred hccCCCceEEEEccCCccccHHHHHHhHhcC
Q 007512 274 FGKMKKGVRIINVARGGVIDEEALVRALDSG 304 (600)
Q Consensus 274 l~~mk~gailvNvarg~ivde~aL~~aL~~g 304 (600)
...+++|.+||+++.+...+.+.+.+.+.+.
T Consensus 83 ~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~ 113 (295)
T 1yb4_A 83 AKTSLQGKTIVDMSSISPIETKRFAQRVNEM 113 (295)
T ss_dssp TTSCCTTEEEEECSCCCHHHHHHHHHHHHTT
T ss_pred hhcCCCCCEEEECCCCCHHHHHHHHHHHHHc
Confidence 4568999999999999877778888877763
|
| >2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A* | Back alignment and structure |
|---|
Probab=98.84 E-value=2.8e-09 Score=108.91 Aligned_cols=106 Identities=18% Similarity=0.284 Sum_probs=82.4
Q ss_pred CEEEEEecChhHHHHHHHhhcCCCEEEEECCCCC-hhHHHHcCCcc-cCHHHHhccCCEEEEecCCCccccccccH--hH
Q 007512 198 KTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAP-ADRARAIGVDL-VSFDEAIATADFISLHMPLTPATSKVLND--ET 273 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~-~~~a~~~g~~~-~~l~ell~~aDvV~l~~Pl~~~t~~li~~--~~ 273 (600)
++|||||+|.||+.+|+.|...|++|.+||++.. .+...+.|+.. .++++++++||+|++|+|....++.++.. ..
T Consensus 1 m~i~iiG~G~mG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Dvvi~~vp~~~~~~~v~~~~~~~ 80 (296)
T 2gf2_A 1 MPVGFIGLGNMGNPMAKNLMKHGYPLIIYDVFPDACKEFQDAGEQVVSSPADVAEKADRIITMLPTSINAIEAYSGANGI 80 (296)
T ss_dssp CCEEEECCSTTHHHHHHHHHHTTCCEEEECSSTHHHHHHHTTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTSG
T ss_pred CeEEEEeccHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEeCCCHHHHHHHHhCchhH
Confidence 3799999999999999999999999999999863 34445557754 47889999999999999966666665543 24
Q ss_pred hccCCCceEEEEccCCccccHHHHHHhHhc
Q 007512 274 FGKMKKGVRIINVARGGVIDEEALVRALDS 303 (600)
Q Consensus 274 l~~mk~gailvNvarg~ivde~aL~~aL~~ 303 (600)
+..++++.++||++....-+...+.+.+.+
T Consensus 81 ~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~ 110 (296)
T 2gf2_A 81 LKKVKKGSLLIDSSTIDPAVSKELAKEVEK 110 (296)
T ss_dssp GGTCCTTCEEEECSCCCHHHHHHHHHHHHH
T ss_pred HhcCCCCCEEEECCCCCHHHHHHHHHHHHH
Confidence 556899999999877666555666665654
|
| >2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A* | Back alignment and structure |
|---|
Probab=98.84 E-value=3.5e-09 Score=107.57 Aligned_cols=105 Identities=17% Similarity=0.184 Sum_probs=83.2
Q ss_pred CEEEEEecChhHHHHHHHhhcCCCEEEEECCCCC-hhHHHHcCCcccCHHHHhccCCEEEEecCCCccccccccHhHhcc
Q 007512 198 KTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAP-ADRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVLNDETFGK 276 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~-~~~a~~~g~~~~~l~ell~~aDvV~l~~Pl~~~t~~li~~~~l~~ 276 (600)
++|||||+|.||+.+|+.|.. |++|.+||++.. .+...+.|+...++++++++||+|++|+|....+..++ +.....
T Consensus 2 ~~i~iiG~G~~G~~~a~~l~~-g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~D~vi~~v~~~~~~~~v~-~~l~~~ 79 (289)
T 2cvz_A 2 EKVAFIGLGAMGYPMAGHLAR-RFPTLVWNRTFEKALRHQEEFGSEAVPLERVAEARVIFTCLPTTREVYEVA-EALYPY 79 (289)
T ss_dssp CCEEEECCSTTHHHHHHHHHT-TSCEEEECSSTHHHHHHHHHHCCEECCGGGGGGCSEEEECCSSHHHHHHHH-HHHTTT
T ss_pred CeEEEEcccHHHHHHHHHHhC-CCeEEEEeCCHHHHHHHHHCCCcccCHHHHHhCCCEEEEeCCChHHHHHHH-HHHHhh
Confidence 479999999999999999999 999999998863 33344446654447788899999999999654466555 444567
Q ss_pred CCCceEEEEccCCccccHHHHHHhHhcC
Q 007512 277 MKKGVRIINVARGGVIDEEALVRALDSG 304 (600)
Q Consensus 277 mk~gailvNvarg~ivde~aL~~aL~~g 304 (600)
+++|.+++|++.+...+.+.+.+.+.+.
T Consensus 80 l~~~~~vv~~s~~~~~~~~~l~~~~~~~ 107 (289)
T 2cvz_A 80 LREGTYWVDATSGEPEASRRLAERLREK 107 (289)
T ss_dssp CCTTEEEEECSCCCHHHHHHHHHHHHTT
T ss_pred CCCCCEEEECCCCCHHHHHHHHHHHHHc
Confidence 8999999999988877777888877764
|
| >2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET: NAP; 2.20A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.34 E-value=3.4e-10 Score=110.36 Aligned_cols=94 Identities=16% Similarity=0.244 Sum_probs=75.8
Q ss_pred ccCCEEEEEecChhHHHHHHHhhcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEecCCCccccccccHhHh
Q 007512 195 LVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPADRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVLNDETF 274 (600)
Q Consensus 195 l~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Pl~~~t~~li~~~~l 274 (600)
+.+++|||||+|.||+.+|++|...|++|.+||++...+.....|+...++++++++||+|++|+|.. .+..++ .+
T Consensus 17 ~~~~~I~iIG~G~mG~~la~~L~~~G~~V~~~~r~~~~~~~~~~g~~~~~~~~~~~~aDvVilav~~~-~~~~v~---~l 92 (201)
T 2yjz_A 17 EKQGVVCIFGTGDFGKSLGLKMLQCGYSVVFGSRNPQVSSLLPRGAEVLCYSEAASRSDVIVLAVHRE-HYDFLA---EL 92 (201)
Confidence 67889999999999999999999999999999987643333334665557888999999999999964 566665 24
Q ss_pred ccCCCceEEEEccCCccc
Q 007512 275 GKMKKGVRIINVARGGVI 292 (600)
Q Consensus 275 ~~mk~gailvNvarg~iv 292 (600)
..++++.+|||+++|-..
T Consensus 93 ~~~~~~~ivI~~~~G~~~ 110 (201)
T 2yjz_A 93 ADSLKGRVLIDVSNNQKM 110 (201)
Confidence 557789999999998753
|
| >3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri} | Back alignment and structure |
|---|
Probab=98.83 E-value=3.2e-09 Score=108.78 Aligned_cols=107 Identities=18% Similarity=0.243 Sum_probs=85.0
Q ss_pred CEEEEEecChhHHHHHHHhhcCCCEEEEECCCCC-hhHHHHcCCcc-cCHHHHhccCCEEEEecCCCcccccccc--HhH
Q 007512 198 KTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAP-ADRARAIGVDL-VSFDEAIATADFISLHMPLTPATSKVLN--DET 273 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~-~~~a~~~g~~~-~~l~ell~~aDvV~l~~Pl~~~t~~li~--~~~ 273 (600)
++|||||+|.||+.+|+.|...|++|.+||++.. .+...+.|+.. .+++++++++|+|++|+|....++.++. +..
T Consensus 5 ~~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~D~vi~~vp~~~~~~~v~~~~~~l 84 (301)
T 3cky_A 5 IKIGFIGLGAMGKPMAINLLKEGVTVYAFDLMEANVAAVVAQGAQACENNQKVAAASDIIFTSLPNAGIVETVMNGPGGV 84 (301)
T ss_dssp CEEEEECCCTTHHHHHHHHHHTTCEEEEECSSHHHHHHHHTTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTCH
T ss_pred CEEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHCCCeecCCHHHHHhCCCEEEEECCCHHHHHHHHcCcchH
Confidence 5899999999999999999988999999998762 33344446654 3788999999999999996665666664 245
Q ss_pred hccCCCceEEEEccCCccccHHHHHHhHhcC
Q 007512 274 FGKMKKGVRIINVARGGVIDEEALVRALDSG 304 (600)
Q Consensus 274 l~~mk~gailvNvarg~ivde~aL~~aL~~g 304 (600)
...++++.+||++++|...+.+.+.+.+.+.
T Consensus 85 ~~~l~~~~~vv~~~~~~~~~~~~l~~~~~~~ 115 (301)
T 3cky_A 85 LSACKAGTVIVDMSSVSPSSTLKMAKVAAEK 115 (301)
T ss_dssp HHHSCTTCEEEECCCCCHHHHHHHHHHHHHT
T ss_pred hhcCCCCCEEEECCCCCHHHHHHHHHHHHHc
Confidence 5668999999999988766677777777653
|
| >3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.82 E-value=2.5e-08 Score=108.65 Aligned_cols=166 Identities=15% Similarity=0.131 Sum_probs=103.7
Q ss_pred CCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCcccccc----cccee-ccCCEEEEEecChhHHHHHHHhhcCCCEEEE
Q 007512 151 PTANTVAAAEHGIALLAAMARNVAQADASVKAGKWQRNK----YVGVS-LVGKTLAVLGFGKVGSEVARRAKGLGMHVIA 225 (600)
Q Consensus 151 p~~~~~~vAE~~l~lll~~~R~i~~~~~~~~~g~W~~~~----~~g~~-l~gktiGIIGlG~IG~~vA~~l~~~g~~V~~ 225 (600)
.|-|-..+.|.+.+.++. +....++|.... +.... -.=++|||||+|.||..+|..+...|++|++
T Consensus 12 ~~~~~~~~~~~~~~~~~~---------a~~~~~~w~~p~~~~~~~~~~~~~i~kVaVIGaG~MG~~IA~~la~aG~~V~l 82 (460)
T 3k6j_A 12 TGENLYFQGSEVRSYLME---------AHSLAGQWSLPNDRGDHTNSEAYDVNSVAIIGGGTMGKAMAICFGLAGIETFL 82 (460)
T ss_dssp TSGGGGGCBCHHHHHHHH---------TTCCTTSCBCSTTSCBTTSCCCCCCCEEEEECCSHHHHHHHHHHHHTTCEEEE
T ss_pred cccchhhhhHHHHHHHHh---------HHHhhccccCCCCccccccCCcccCCEEEEECCCHHHHHHHHHHHHCCCeEEE
Confidence 344555566666666665 223345686431 11111 1226899999999999999999999999999
Q ss_pred ECCCCCh---------hHHHHcCC-------------c-ccCHHHHhccCCEEEEecCCCccccccccHhHhccCCCceE
Q 007512 226 HDPYAPA---------DRARAIGV-------------D-LVSFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVR 282 (600)
Q Consensus 226 ~d~~~~~---------~~a~~~g~-------------~-~~~l~ell~~aDvV~l~~Pl~~~t~~li~~~~l~~mk~gai 282 (600)
||++... +.+.+.|. . ..+++ .+++||+|+.|+|...+.+.-+-++....++++++
T Consensus 83 ~D~~~e~a~~~i~~~l~~~~~~G~l~~~~~~~~~~~i~~t~dl~-al~~aDlVIeAVpe~~~vk~~v~~~l~~~~~~~aI 161 (460)
T 3k6j_A 83 VVRNEQRCKQELEVMYAREKSFKRLNDKRIEKINANLKITSDFH-KLSNCDLIVESVIEDMKLKKELFANLENICKSTCI 161 (460)
T ss_dssp ECSCHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHTTEEEESCGG-GCTTCSEEEECCCSCHHHHHHHHHHHHTTSCTTCE
T ss_pred EECcHHHHHHHHHHHHHHHHHcCCCCHHHHHHHhcceEEeCCHH-HHccCCEEEEcCCCCHHHHHHHHHHHHhhCCCCCE
Confidence 9987531 11223332 1 23564 68999999999997766554444556667999999
Q ss_pred EEEccCCccccHHHHHHhHhcCCceEEEEeccCCCCCCCCCccccCCcEEEcCCC
Q 007512 283 IINVARGGVIDEEALVRALDSGRVAQAALDVFTEEPPPADSKLVQHERVTVTPHL 337 (600)
Q Consensus 283 lvNvarg~ivde~aL~~aL~~g~i~ga~lDv~~~EP~~~~~~L~~~~nvilTPH~ 337 (600)
|++.+++ +....+.+.+.. .-...+++-|. |.+ .-+| +.++|+.
T Consensus 162 lasnTSs--l~i~~ia~~~~~-p~r~iG~Hffn--Pv~-~m~L-----vEIv~g~ 205 (460)
T 3k6j_A 162 FGTNTSS--LDLNEISSVLRD-PSNLVGIHFFN--PAN-VIRL-----VEIIYGS 205 (460)
T ss_dssp EEECCSS--SCHHHHHTTSSS-GGGEEEEECCS--STT-TCCE-----EEEECCS
T ss_pred EEecCCC--hhHHHHHHhccC-CcceEEEEecc--hhh-hCCE-----EEEEeCC
Confidence 9654444 234555555543 22236777776 432 2344 4566753
|
| >2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A* | Back alignment and structure |
|---|
Probab=98.80 E-value=9e-09 Score=113.09 Aligned_cols=112 Identities=17% Similarity=0.156 Sum_probs=87.3
Q ss_pred eccCCEEEEEecChhHHHHHHHhhcCCCEEEEECCCCC-hhHHHHc----CCcc-cCHHHHhcc---CCEEEEecCCCcc
Q 007512 194 SLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAP-ADRARAI----GVDL-VSFDEAIAT---ADFISLHMPLTPA 264 (600)
Q Consensus 194 ~l~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~-~~~a~~~----g~~~-~~l~ell~~---aDvV~l~~Pl~~~ 264 (600)
-...++|||||+|.||+.+|+.|...|++|.+||+... .+...+. |+.. .++++++++ ||+|++++|..+.
T Consensus 12 ~~~~~~IgvIGlG~MG~~lA~~La~~G~~V~v~~r~~~~~~~l~~~~~~~gi~~~~s~~e~v~~l~~aDvVil~Vp~~~~ 91 (480)
T 2zyd_A 12 HMSKQQIGVVGMAVMGRNLALNIESRGYTVSIFNRSREKTEEVIAENPGKKLVPYYTVKEFVESLETPRRILLMVKAGAG 91 (480)
T ss_dssp ---CBSEEEECCSHHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHSTTSCEEECSSHHHHHHTBCSSCEEEECSCSSSH
T ss_pred ccCCCeEEEEccHHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHhhCCCCCeEEeCCHHHHHhCCCCCCEEEEECCCHHH
Confidence 34567899999999999999999999999999998763 2333332 5543 478888877 9999999997667
Q ss_pred ccccccHhHhccCCCceEEEEccCCccccHHHHHHhHhcCCc
Q 007512 265 TSKVLNDETFGKMKKGVRIINVARGGVIDEEALVRALDSGRV 306 (600)
Q Consensus 265 t~~li~~~~l~~mk~gailvNvarg~ivde~aL~~aL~~g~i 306 (600)
++.++ ++....+++|.+|||++.|...+...+.+.+.+..+
T Consensus 92 v~~vl-~~l~~~l~~g~iIId~s~g~~~~t~~l~~~l~~~g~ 132 (480)
T 2zyd_A 92 TDAAI-DSLKPYLDKGDIIIDGGNTFFQDTIRRNRELSAEGF 132 (480)
T ss_dssp HHHHH-HHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHH-HHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHCCC
Confidence 77777 355677899999999999987777777777776433
|
| >1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6 | Back alignment and structure |
|---|
Probab=98.78 E-value=8.2e-09 Score=103.73 Aligned_cols=101 Identities=15% Similarity=0.223 Sum_probs=78.4
Q ss_pred CEEEEEecChhHHHHHHHhhcCCCEEEEECCCCC---hhHHHHcCCcccCHHHHhccCCEEEEecCCCccccccccHhHh
Q 007512 198 KTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAP---ADRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVLNDETF 274 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~---~~~a~~~g~~~~~l~ell~~aDvV~l~~Pl~~~t~~li~~~~l 274 (600)
++|||||+|.||+.+|+.|...|++|++||+... .+...+.|+. .++++++++||+|++|+|.......+ ....
T Consensus 1 M~I~iIG~G~mG~~la~~l~~~g~~V~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~aDvvi~~v~~~~~~~~~--~~~~ 77 (264)
T 1i36_A 1 LRVGFIGFGEVAQTLASRLRSRGVEVVTSLEGRSPSTIERARTVGVT-ETSEEDVYSCPVVISAVTPGVALGAA--RRAG 77 (264)
T ss_dssp CEEEEESCSHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTCE-ECCHHHHHTSSEEEECSCGGGHHHHH--HHHH
T ss_pred CeEEEEechHHHHHHHHHHHHCCCeEEEeCCccCHHHHHHHHHCCCc-CCHHHHHhcCCEEEEECCCHHHHHHH--HHHH
Confidence 4799999999999999999988999999988422 2333445776 77889999999999999965444443 3455
Q ss_pred ccCCCceEEEEccCCccccHHHHHHhHhc
Q 007512 275 GKMKKGVRIINVARGGVIDEEALVRALDS 303 (600)
Q Consensus 275 ~~mk~gailvNvarg~ivde~aL~~aL~~ 303 (600)
..+++ ++||++.+...+.+.+.+.+..
T Consensus 78 ~~~~~--~vi~~s~~~~~~~~~l~~~~~~ 104 (264)
T 1i36_A 78 RHVRG--IYVDINNISPETVRMASSLIEK 104 (264)
T ss_dssp TTCCS--EEEECSCCCHHHHHHHHHHCSS
T ss_pred HhcCc--EEEEccCCCHHHHHHHHHHHhh
Confidence 66776 9999988777667778777765
|
| >2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.77 E-value=8.1e-09 Score=106.73 Aligned_cols=106 Identities=18% Similarity=0.216 Sum_probs=84.1
Q ss_pred CEEEEEecChhHHHHHHHhhcCCCEEEEECCCC-ChhHHHHcCCccc-CHHHHhccCCEEEEecCCCccccccccH--hH
Q 007512 198 KTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYA-PADRARAIGVDLV-SFDEAIATADFISLHMPLTPATSKVLND--ET 273 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~-~~~~a~~~g~~~~-~l~ell~~aDvV~l~~Pl~~~t~~li~~--~~ 273 (600)
++|||||+|.||+.+|+.|...|++|.+||++. ..+...+.|+... ++++++++||+|++|+|....++.++.. ..
T Consensus 31 ~~I~iIG~G~mG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~DvVi~av~~~~~~~~v~~~~~~~ 110 (316)
T 2uyy_A 31 KKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQEGARLGRTPAEVVSTCDITFACVSDPKAAKDLVLGPSGV 110 (316)
T ss_dssp SCEEEECCSHHHHHHHHHHHHTTCCEEEECSSGGGGHHHHHTTCEECSCHHHHHHHCSEEEECCSSHHHHHHHHHSTTCG
T ss_pred CeEEEEcccHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHcCCEEcCCHHHHHhcCCEEEEeCCCHHHHHHHHcCchhH
Confidence 689999999999999999998999999999876 3344555676543 7889999999999999965556555533 23
Q ss_pred hccCCCceEEEEccCCccccHHHHHHhHhc
Q 007512 274 FGKMKKGVRIINVARGGVIDEEALVRALDS 303 (600)
Q Consensus 274 l~~mk~gailvNvarg~ivde~aL~~aL~~ 303 (600)
+..++++.++||++++.....+.+.+.+..
T Consensus 111 ~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~ 140 (316)
T 2uyy_A 111 LQGIRPGKCYVDMSTVDADTVTELAQVIVS 140 (316)
T ss_dssp GGGCCTTCEEEECSCCCHHHHHHHHHHHHH
T ss_pred hhcCCCCCEEEECCCCCHHHHHHHHHHHHH
Confidence 466899999999998876667777777754
|
| >2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.75 E-value=1.8e-08 Score=111.10 Aligned_cols=107 Identities=16% Similarity=0.201 Sum_probs=86.3
Q ss_pred CCEEEEEecChhHHHHHHHhhcCCCEEEEECCCCC-hhHHHH-----cCCcc-cCHHHHhcc---CCEEEEecCCCcccc
Q 007512 197 GKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAP-ADRARA-----IGVDL-VSFDEAIAT---ADFISLHMPLTPATS 266 (600)
Q Consensus 197 gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~-~~~a~~-----~g~~~-~~l~ell~~---aDvV~l~~Pl~~~t~ 266 (600)
..+|||||+|.||+.+|+.|...|++|.+||+... .+...+ .|+.. .+++++++. ||+|++++|....++
T Consensus 10 ~~~IgvIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~~gi~~~~s~~e~v~~l~~aDvVil~Vp~~~~v~ 89 (497)
T 2p4q_A 10 SADFGLIGLAVMGQNLILNAADHGFTVCAYNRTQSKVDHFLANEAKGKSIIGATSIEDFISKLKRPRKVMLLVKAGAPVD 89 (497)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSHHHHHHHHTTTTTSSEECCSSHHHHHHTSCSSCEEEECCCSSHHHH
T ss_pred CCCEEEEeeHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHcccccCCCeEEeCCHHHHHhcCCCCCEEEEEcCChHHHH
Confidence 45899999999999999999999999999999873 333333 35543 478888877 999999999766777
Q ss_pred ccccHhHhccCCCceEEEEccCCccccHHHHHHhHhcC
Q 007512 267 KVLNDETFGKMKKGVRIINVARGGVIDEEALVRALDSG 304 (600)
Q Consensus 267 ~li~~~~l~~mk~gailvNvarg~ivde~aL~~aL~~g 304 (600)
.++ +.....+++|.+|||++.+...+...+.+.+.+.
T Consensus 90 ~vl-~~l~~~l~~g~iIId~s~~~~~~~~~l~~~l~~~ 126 (497)
T 2p4q_A 90 ALI-NQIVPLLEKGDIIIDGGNSHFPDSNRRYEELKKK 126 (497)
T ss_dssp HHH-HHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHT
T ss_pred HHH-HHHHHhCCCCCEEEECCCCChhHHHHHHHHHHHc
Confidence 777 4556778999999999998877777777777664
|
| >1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1 | Back alignment and structure |
|---|
Probab=98.70 E-value=4.3e-08 Score=103.86 Aligned_cols=106 Identities=24% Similarity=0.288 Sum_probs=84.3
Q ss_pred eccCCEEEEEecChhHHHHHHHhhcCCCEEEEECCCCCh--hHHHHcCCcccCHHHHhc-cCCEEEEecCCCcccccccc
Q 007512 194 SLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPA--DRARAIGVDLVSFDEAIA-TADFISLHMPLTPATSKVLN 270 (600)
Q Consensus 194 ~l~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~~--~~a~~~g~~~~~l~ell~-~aDvV~l~~Pl~~~t~~li~ 270 (600)
+|.||||+|+|+|+||+.+|+.|..+|++|+++|++... +.+.+.|.+.++.++++. +||+++.|. +.++++
T Consensus 170 ~L~GktV~V~G~G~VG~~~A~~L~~~GakVvv~D~~~~~l~~~a~~~ga~~v~~~~ll~~~~DIvip~a-----~~~~I~ 244 (364)
T 1leh_A 170 SLEGLAVSVQGLGNVAKALCKKLNTEGAKLVVTDVNKAAVSAAVAEEGADAVAPNAIYGVTCDIFAPCA-----LGAVLN 244 (364)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHCCEECCGGGTTTCCCSEEEECS-----CSCCBS
T ss_pred CCCcCEEEEECchHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHcCCEEEChHHHhccCCcEeeccc-----hHHHhC
Confidence 799999999999999999999999999999999987532 233445777778888877 899999874 566788
Q ss_pred HhHhccCCCceEEEEccCCccccHHHHHHhHhcCCc
Q 007512 271 DETFGKMKKGVRIINVARGGVIDEEALVRALDSGRV 306 (600)
Q Consensus 271 ~~~l~~mk~gailvNvarg~ivde~aL~~aL~~g~i 306 (600)
.+.++.|+ ..+|++.+++++.++++ .+.|+++.+
T Consensus 245 ~~~~~~lg-~~iV~e~An~p~t~~ea-~~~L~~~Gi 278 (364)
T 1leh_A 245 DFTIPQLK-AKVIAGSADNQLKDPRH-GKYLHELGI 278 (364)
T ss_dssp TTHHHHCC-CSEECCSCSCCBSSHHH-HHHHHHHTC
T ss_pred HHHHHhCC-CcEEEeCCCCCcccHHH-HHHHHhCCC
Confidence 88888884 56889999999877553 455666544
|
| >2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A* | Back alignment and structure |
|---|
Probab=98.69 E-value=3e-08 Score=108.72 Aligned_cols=108 Identities=14% Similarity=0.176 Sum_probs=84.8
Q ss_pred CEEEEEecChhHHHHHHHhhcCCCEEEEECCCCC-hhHHHHc----CCcc-cCHHHHhcc---CCEEEEecCCCcccccc
Q 007512 198 KTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAP-ADRARAI----GVDL-VSFDEAIAT---ADFISLHMPLTPATSKV 268 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~-~~~a~~~----g~~~-~~l~ell~~---aDvV~l~~Pl~~~t~~l 268 (600)
++|||||+|.||+.+|+.|...|++|.+||+... .+...+. |+.. .+++++++. +|+|++|+|....+..+
T Consensus 6 ~~IgvIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~gi~~~~s~~e~v~~l~~aDvVilavp~~~~v~~v 85 (474)
T 2iz1_A 6 ANFGVVGMAVMGKNLALNVESRGYTVAIYNRTTSKTEEVFKEHQDKNLVFTKTLEEFVGSLEKPRRIMLMVQAGAATDAT 85 (474)
T ss_dssp BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSCEEECSSHHHHHHTBCSSCEEEECCCTTHHHHHH
T ss_pred CcEEEEeeHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHhCcCCCeEEeCCHHHHHhhccCCCEEEEEccCchHHHHH
Confidence 5799999999999999999999999999998763 2333322 5543 478888876 99999999976667766
Q ss_pred ccHhHhccCCCceEEEEccCCccccHHHHHHhHhcCCc
Q 007512 269 LNDETFGKMKKGVRIINVARGGVIDEEALVRALDSGRV 306 (600)
Q Consensus 269 i~~~~l~~mk~gailvNvarg~ivde~aL~~aL~~g~i 306 (600)
+ ++....+++|.+|||++.+...+...+.+.+.+..+
T Consensus 86 l-~~l~~~l~~g~iiId~s~~~~~~~~~l~~~l~~~g~ 122 (474)
T 2iz1_A 86 I-KSLLPLLDIGDILIDGGNTHFPDTMRRNAELADSGI 122 (474)
T ss_dssp H-HHHGGGCCTTCEEEECSCCCHHHHHHHHHHTTTSSC
T ss_pred H-HHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHCCC
Confidence 6 345567899999999999887777778777776433
|
| >2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A* | Back alignment and structure |
|---|
Probab=98.67 E-value=3.3e-08 Score=108.67 Aligned_cols=108 Identities=19% Similarity=0.193 Sum_probs=84.7
Q ss_pred CEEEEEecChhHHHHHHHhhcCCCEEEEECCCCC-hhHHHH-----cCCcc-cCHHHHhc---cCCEEEEecCCCccccc
Q 007512 198 KTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAP-ADRARA-----IGVDL-VSFDEAIA---TADFISLHMPLTPATSK 267 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~-~~~a~~-----~g~~~-~~l~ell~---~aDvV~l~~Pl~~~t~~ 267 (600)
++|||||+|.||+.+|..|...|++|.+||++.. .+...+ .|+.. .+++++++ ++|+|++|+|....+..
T Consensus 3 m~IgvIG~G~mG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~g~gi~~~~~~~e~v~~l~~aDvVilaVp~~~~v~~ 82 (482)
T 2pgd_A 3 ADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVLGAHSLEEMVSKLKKPRRIILLVKAGQAVDN 82 (482)
T ss_dssp BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHTTTTTSSCEECSSHHHHHHHBCSSCEEEECSCTTHHHHH
T ss_pred CeEEEEChHHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHhccccCCCeEEeCCHHHHHhhccCCCEEEEeCCChHHHHH
Confidence 4799999999999999999999999999998863 333344 45543 47888874 89999999997666777
Q ss_pred cccHhHhccCCCceEEEEccCCccccHHHHHHhHhcCCc
Q 007512 268 VLNDETFGKMKKGVRIINVARGGVIDEEALVRALDSGRV 306 (600)
Q Consensus 268 li~~~~l~~mk~gailvNvarg~ivde~aL~~aL~~g~i 306 (600)
++. .....+++|.+|||++.|...+...+.+.+.+..+
T Consensus 83 vl~-~l~~~l~~g~iII~~s~~~~~~~~~l~~~l~~~g~ 120 (482)
T 2pgd_A 83 FIE-KLVPLLDIGDIIIDGGNSEYRDTMRRCRDLKDKGI 120 (482)
T ss_dssp HHH-HHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTC
T ss_pred HHH-HHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCC
Confidence 763 45567899999999999887676777777766433
|
| >3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.67 E-value=1.4e-08 Score=102.34 Aligned_cols=101 Identities=12% Similarity=0.188 Sum_probs=75.6
Q ss_pred cceeccCCEEEEEecChhHHHHHHHhhcCCCE-EEEECCCCC-hhHH-HHcCCcc-cCHHHHhccCCEEEEecCCCcccc
Q 007512 191 VGVSLVGKTLAVLGFGKVGSEVARRAKGLGMH-VIAHDPYAP-ADRA-RAIGVDL-VSFDEAIATADFISLHMPLTPATS 266 (600)
Q Consensus 191 ~g~~l~gktiGIIGlG~IG~~vA~~l~~~g~~-V~~~d~~~~-~~~a-~~~g~~~-~~l~ell~~aDvV~l~~Pl~~~t~ 266 (600)
+..++.+++|||||+|.||+.+|+.+...|++ |.+||++.. .+.. ...|+.. .++++++++||+|++|+|.. ...
T Consensus 4 m~~~~~~m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Dvvi~av~~~-~~~ 82 (266)
T 3d1l_A 4 MKRSIEDTPIVLIGAGNLATNLAKALYRKGFRIVQVYSRTEESARELAQKVEAEYTTDLAEVNPYAKLYIVSLKDS-AFA 82 (266)
T ss_dssp ---CGGGCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSHHHHHHHHHHTTCEEESCGGGSCSCCSEEEECCCHH-HHH
T ss_pred hhcCCCCCeEEEEcCCHHHHHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHcCCceeCCHHHHhcCCCEEEEecCHH-HHH
Confidence 44566778999999999999999999988988 899998752 2223 2337654 37889999999999999954 344
Q ss_pred ccccHhHhccCCCceEEEEccCCcccc
Q 007512 267 KVLNDETFGKMKKGVRIINVARGGVID 293 (600)
Q Consensus 267 ~li~~~~l~~mk~gailvNvarg~ivd 293 (600)
.++ +.....++++.++++++.|...+
T Consensus 83 ~v~-~~l~~~~~~~~ivv~~s~~~~~~ 108 (266)
T 3d1l_A 83 ELL-QGIVEGKREEALMVHTAGSIPMN 108 (266)
T ss_dssp HHH-HHHHTTCCTTCEEEECCTTSCGG
T ss_pred HHH-HHHHhhcCCCcEEEECCCCCchH
Confidence 444 33445688999999999887643
|
| >1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A | Back alignment and structure |
|---|
Probab=98.67 E-value=4.2e-07 Score=96.18 Aligned_cols=181 Identities=14% Similarity=0.133 Sum_probs=114.3
Q ss_pred CceEEEEcCCCCCCHHHHhccCCCceEEEEcCcccCccChhHHHhCCceeecC---CCCC-----hHHHHHHH--HHHHH
Q 007512 98 LCDALIVRSGTKVNRDVFESSAGRLKVVGRAGVGIDNVDLAAATEFGCLVVNA---PTAN-----TVAAAEHG--IALLA 167 (600)
Q Consensus 98 ~~d~li~~~~~~~~~~~l~~~~~~Lk~I~~~g~G~d~iD~~aa~~~GI~V~n~---p~~~-----~~~vAE~~--l~lll 167 (600)
++|.++ ....+...+.. ...+++.++......++.-.++++.++|+...|. |.-. -.++++.+ ++.++
T Consensus 66 ~ad~i~-~vksP~~~~~~-~~~~g~~~~~y~~~~~~~~l~~~l~~~gi~~~~~etvp~k~~~~~~l~~~s~~Ag~~a~~~ 143 (361)
T 1pjc_A 66 SREMVV-KVKEPLPAEYD-LMQKDQLLFTYLHLAAARELTEQLMRVGLTAIAYETVELPNRSLPLLTPMSIIAGRLSVQF 143 (361)
T ss_dssp TSSEEE-CSSCCCGGGGG-GCCTTCEEEECCCGGGCHHHHHHHHHHTCEEEEGGGCCCTTSCCTTTHHHHHHHHHHHHHH
T ss_pred cCCeEE-EECCCCHHHHH-hhcCCCEEEEEeccccCHHHHHHHHHcCCeEEEEeeeEcccCCccccCcchHHHHHHHHHH
Confidence 688765 33344433332 2234676666666666665578888899888753 4321 12333333 34444
Q ss_pred HHHhchHHHHHHHHcC--ccccccccceeccCCEEEEEecChhHHHHHHHhhcCCCEEEEECCCCC-hhHHHHcCCcc--
Q 007512 168 AMARNVAQADASVKAG--KWQRNKYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAP-ADRARAIGVDL-- 242 (600)
Q Consensus 168 ~~~R~i~~~~~~~~~g--~W~~~~~~g~~l~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~-~~~a~~~g~~~-- 242 (600)
.. .++... ..| -+... . ..+.++++.|+|.|.+|+.+++.++.+|++|+++|++.. .+.+.+.+...
T Consensus 144 gA-~nt~~~----~~g~G~~l~~-l--~~l~~~~VlViGaGgvG~~aa~~a~~~Ga~V~v~dr~~~r~~~~~~~~~~~~~ 215 (361)
T 1pjc_A 144 GA-RFLERQ----QGGRGVLLGG-V--PGVKPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGSRVE 215 (361)
T ss_dssp HH-HHTSGG----GTSCCCCTTC-B--TTBCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGSE
T ss_pred HH-HHHhhc----cCCCceeccC-C--CCCCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHhhCceeE
Confidence 33 221110 111 11110 0 247789999999999999999999999999999998762 33343333221
Q ss_pred ------cCHHHHhccCCEEEEecCCCc-cccccccHhHhccCCCceEEEEccC
Q 007512 243 ------VSFDEAIATADFISLHMPLTP-ATSKVLNDETFGKMKKGVRIINVAR 288 (600)
Q Consensus 243 ------~~l~ell~~aDvV~l~~Pl~~-~t~~li~~~~l~~mk~gailvNvar 288 (600)
.++.+.+..+|+|+.+++... .+..++.+..++.||++.+++|++-
T Consensus 216 ~~~~~~~~~~~~~~~~DvVI~~~~~~~~~~~~li~~~~~~~~~~g~~ivdv~~ 268 (361)
T 1pjc_A 216 LLYSNSAEIETAVAEADLLIGAVLVPGRRAPILVPASLVEQMRTGSVIVDVAV 268 (361)
T ss_dssp EEECCHHHHHHHHHTCSEEEECCCCTTSSCCCCBCHHHHTTSCTTCEEEETTC
T ss_pred eeeCCHHHHHHHHcCCCEEEECCCcCCCCCCeecCHHHHhhCCCCCEEEEEec
Confidence 245677789999999997533 2345567888999999999999984
|
| >3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP} | Back alignment and structure |
|---|
Probab=98.66 E-value=2.3e-08 Score=102.03 Aligned_cols=91 Identities=26% Similarity=0.432 Sum_probs=73.3
Q ss_pred CEEEEEec-ChhHHHHHHHhhcCCCEEEEECCCC-ChhHHHHcCCcccCHHHHhccCCEEEEecCCCccccccccHhHhc
Q 007512 198 KTLAVLGF-GKVGSEVARRAKGLGMHVIAHDPYA-PADRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVLNDETFG 275 (600)
Q Consensus 198 ktiGIIGl-G~IG~~vA~~l~~~g~~V~~~d~~~-~~~~a~~~g~~~~~l~ell~~aDvV~l~~Pl~~~t~~li~~~~l~ 275 (600)
++|||||+ |.||+.+|+.|...|++|++||++. ..+...+.|+...++.+++++||+|++|+|... +..++ ++...
T Consensus 12 m~I~iIG~tG~mG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~aDvVi~av~~~~-~~~v~-~~l~~ 89 (286)
T 3c24_A 12 KTVAILGAGGKMGARITRKIHDSAHHLAAIEIAPEGRDRLQGMGIPLTDGDGWIDEADVVVLALPDNI-IEKVA-EDIVP 89 (286)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHSSSEEEEECCSHHHHHHHHHTTCCCCCSSGGGGTCSEEEECSCHHH-HHHHH-HHHGG
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHhcCCCcCCHHHHhcCCCEEEEcCCchH-HHHHH-HHHHH
Confidence 58999999 9999999999999999999999876 334444567665677888999999999999443 55555 34455
Q ss_pred cCCCceEEEEccCCc
Q 007512 276 KMKKGVRIINVARGG 290 (600)
Q Consensus 276 ~mk~gailvNvarg~ 290 (600)
.++++++|||++.|.
T Consensus 90 ~l~~~~ivv~~s~~~ 104 (286)
T 3c24_A 90 RVRPGTIVLILDAAA 104 (286)
T ss_dssp GSCTTCEEEESCSHH
T ss_pred hCCCCCEEEECCCCc
Confidence 689999999988776
|
| >2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A | Back alignment and structure |
|---|
Probab=98.61 E-value=6.4e-08 Score=105.93 Aligned_cols=136 Identities=17% Similarity=0.174 Sum_probs=89.7
Q ss_pred CEEEEEecChhHHHHHHHhhcC--CCEEEEECCCCChhHHH----------------H----cCCcc-cCHHHHhccCCE
Q 007512 198 KTLAVLGFGKVGSEVARRAKGL--GMHVIAHDPYAPADRAR----------------A----IGVDL-VSFDEAIATADF 254 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~--g~~V~~~d~~~~~~~a~----------------~----~g~~~-~~l~ell~~aDv 254 (600)
++|+|||+|.||..+|..|... |++|++||++....... . .++.. .++++.+++||+
T Consensus 6 mkI~VIG~G~mG~~lA~~La~~g~G~~V~~~d~~~~~~~~l~~g~~~i~e~~l~~~~~~~~~~~~~~t~~~~e~~~~aDv 85 (467)
T 2q3e_A 6 KKICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNESRINAWNSPTLPIYEPGLKEVVESCRGKNLFFSTNIDDAIKEADL 85 (467)
T ss_dssp CEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCHHHHHHHTSSSCSSCCTTHHHHHHHHBTTTEEEESCHHHHHHHCSE
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHhCCCCCcCCCCHHHHHHHhhcCCEEEECCHHHHHhcCCE
Confidence 5899999999999999999876 89999999875221111 1 13333 367888999999
Q ss_pred EEEecCCCccccccc-------------cHhHhccCCCceEEEEccCCccccHHHHHHhHhcCCceEEEEe-ccCCCCCC
Q 007512 255 ISLHMPLTPATSKVL-------------NDETFGKMKKGVRIINVARGGVIDEEALVRALDSGRVAQAALD-VFTEEPPP 320 (600)
Q Consensus 255 V~l~~Pl~~~t~~li-------------~~~~l~~mk~gailvNvarg~ivde~aL~~aL~~g~i~ga~lD-v~~~EP~~ 320 (600)
|++|+|......+.+ -+.....|++|.++||+++..+-..+.+.+.+++....+.... .+.+|+..
T Consensus 86 ViiaVptp~~~~~v~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~~g~~~~l~~~l~~~~~~~~d~~V~~~Pe~~~ 165 (467)
T 2q3e_A 86 VFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSNGYKIVTEKSTVPVRAAESIRRIFDANTKPNLNLQVLSNPEFLA 165 (467)
T ss_dssp EEECCCCCBCCSSTTTTTSBCCHHHHHHHHHHHHTCCSEEEEEECSCCCTTHHHHHHHHHHHTCCTTCEEEEEECCCCCC
T ss_pred EEEEcCCchhhccccccCCCcHHHHHHHHHHHHhhCCCCCEEEECCcCCchHHHHHHHHHHHhCCCCCCeEEEeCHHHhh
Confidence 999999544332211 1234456899999999998777667777777766432111111 35566543
Q ss_pred CCC---ccccCCcEEE
Q 007512 321 ADS---KLVQHERVTV 333 (600)
Q Consensus 321 ~~~---~L~~~~nvil 333 (600)
... .++..+++++
T Consensus 166 ~G~~~~d~~~~~rivv 181 (467)
T 2q3e_A 166 EGTAIKDLKNPDRVLI 181 (467)
T ss_dssp TTSHHHHHHSCSCEEE
T ss_pred cccchhhccCCCEEEE
Confidence 333 3456666754
|
| >2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A* | Back alignment and structure |
|---|
Probab=98.60 E-value=2.4e-08 Score=97.90 Aligned_cols=93 Identities=16% Similarity=0.224 Sum_probs=71.0
Q ss_pred cCCEEEEEecChhHHHHHHHhhcCCCEEEEECCCCC-hhHHHHcCCcccCHHHHhccCCEEEEecCCCccccccccHhHh
Q 007512 196 VGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAP-ADRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVLNDETF 274 (600)
Q Consensus 196 ~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~-~~~a~~~g~~~~~l~ell~~aDvV~l~~Pl~~~t~~li~~~~l 274 (600)
.+++|+|||+|.||+.+|+.|...|++|.++|++.. .+...+.|+...++++++++||+|++|+|. .....++. +
T Consensus 27 ~~~~I~iiG~G~~G~~la~~l~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~DvVi~av~~-~~~~~v~~---l 102 (215)
T 2vns_A 27 EAPKVGILGSGDFARSLATRLVGSGFKVVVGSRNPKRTARLFPSAAQVTFQEEAVSSPEVIFVAVFR-EHYSSLCS---L 102 (215)
T ss_dssp --CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSHHHHHHHSBTTSEEEEHHHHTTSCSEEEECSCG-GGSGGGGG---G
T ss_pred CCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCceecHHHHHhCCCEEEECCCh-HHHHHHHH---H
Confidence 457899999999999999999999999999998752 223333366656888999999999999994 44555553 3
Q ss_pred ccCCCceEEEEccCCccc
Q 007512 275 GKMKKGVRIINVARGGVI 292 (600)
Q Consensus 275 ~~mk~gailvNvarg~iv 292 (600)
..+.++.++||+++|...
T Consensus 103 ~~~~~~~~vv~~s~g~~~ 120 (215)
T 2vns_A 103 SDQLAGKILVDVSNPTEQ 120 (215)
T ss_dssp HHHHTTCEEEECCCCCHH
T ss_pred HHhcCCCEEEEeCCCccc
Confidence 333379999999998754
|
| >1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6 | Back alignment and structure |
|---|
Probab=98.60 E-value=6.6e-08 Score=106.17 Aligned_cols=108 Identities=14% Similarity=0.225 Sum_probs=83.6
Q ss_pred CEEEEEecChhHHHHHHHhhcCCCEEEEECCCCC-hhHHH-HcC-------Cc-ccCHHHHhcc---CCEEEEecCCCcc
Q 007512 198 KTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAP-ADRAR-AIG-------VD-LVSFDEAIAT---ADFISLHMPLTPA 264 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~-~~~a~-~~g-------~~-~~~l~ell~~---aDvV~l~~Pl~~~ 264 (600)
++|||||+|.||+.+|+.|...|++|.+||+... .+... ..| +. ..+++++++. +|+|++|+|....
T Consensus 2 MkIgVIG~G~mG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~g~~~~~~~i~~~~~~~e~v~~l~~aDvVilaVp~~~~ 81 (478)
T 1pgj_A 2 MDVGVVGLGVMGANLALNIAEKGFKVAVFNRTYSKSEEFMKANASAPFAGNLKAFETMEAFAASLKKPRKALILVQAGAA 81 (478)
T ss_dssp BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSTTGGGEEECSCHHHHHHHBCSSCEEEECCCCSHH
T ss_pred CEEEEEChHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcCCCCCCCCeEEECCHHHHHhcccCCCEEEEecCChHH
Confidence 4799999999999999999999999999998752 22222 224 33 2478888774 9999999997666
Q ss_pred ccccccHhHhccCCCceEEEEccCCccccHHHHHHhHhcCCc
Q 007512 265 TSKVLNDETFGKMKKGVRIINVARGGVIDEEALVRALDSGRV 306 (600)
Q Consensus 265 t~~li~~~~l~~mk~gailvNvarg~ivde~aL~~aL~~g~i 306 (600)
+..++ +.....+++|.+|||++.|...+.+.+.+.+.+..+
T Consensus 82 v~~vl-~~l~~~l~~g~iIId~sng~~~~~~~l~~~l~~~g~ 122 (478)
T 1pgj_A 82 TDSTI-EQLKKVFEKGDILVDTGNAHFKDQGRRAQQLEAAGL 122 (478)
T ss_dssp HHHHH-HHHHHHCCTTCEEEECCCCCHHHHHHHHHHHHTTTC
T ss_pred HHHHH-HHHHhhCCCCCEEEECCCCChHHHHHHHHHHHHCCC
Confidence 67666 345566899999999999887777778777876433
|
| >2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=98.54 E-value=8.7e-08 Score=93.56 Aligned_cols=81 Identities=15% Similarity=0.288 Sum_probs=62.2
Q ss_pred ceeccCCEEEEEecChhHHHHHHHhhcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEecCCCccccccccH
Q 007512 192 GVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPADRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVLND 271 (600)
Q Consensus 192 g~~l~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Pl~~~t~~li~~ 271 (600)
..++.+++|+|||+|.||+.+|+.|...|++|.+||++.. .+++||+|++|+| .+.++.++.+
T Consensus 14 ~~~~~~~~I~iiG~G~mG~~la~~l~~~g~~V~~~~~~~~----------------~~~~aD~vi~av~-~~~~~~v~~~ 76 (209)
T 2raf_A 14 NLYFQGMEITIFGKGNMGQAIGHNFEIAGHEVTYYGSKDQ----------------ATTLGEIVIMAVP-YPALAALAKQ 76 (209)
T ss_dssp ------CEEEEECCSHHHHHHHHHHHHTTCEEEEECTTCC----------------CSSCCSEEEECSC-HHHHHHHHHH
T ss_pred ccccCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHH----------------HhccCCEEEEcCC-cHHHHHHHHH
Confidence 3578899999999999999999999999999999998753 4678999999999 6666666542
Q ss_pred hHhccCCCceEEEEccCCcc
Q 007512 272 ETFGKMKKGVRIINVARGGV 291 (600)
Q Consensus 272 ~~l~~mk~gailvNvarg~i 291 (600)
....++ +++++|+++|--
T Consensus 77 -l~~~~~-~~~vi~~~~g~~ 94 (209)
T 2raf_A 77 -YATQLK-GKIVVDITNPLN 94 (209)
T ss_dssp -THHHHT-TSEEEECCCCBC
T ss_pred -HHHhcC-CCEEEEECCCCC
Confidence 334467 999999998654
|
| >3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium} | Back alignment and structure |
|---|
Probab=98.54 E-value=1.3e-07 Score=86.30 Aligned_cols=87 Identities=16% Similarity=0.202 Sum_probs=69.2
Q ss_pred CCEEEEEecChhHHHHHHHhhcCCCEEEEECCCCCh--hHHHHcCCc---ccCHHHHhccCCEEEEecCCCccccccccH
Q 007512 197 GKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPA--DRARAIGVD---LVSFDEAIATADFISLHMPLTPATSKVLND 271 (600)
Q Consensus 197 gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~~--~~a~~~g~~---~~~l~ell~~aDvV~l~~Pl~~~t~~li~~ 271 (600)
|++++|||.|.||+.+++.|+.+|++|.++|++... ..+.+.+.. ..+++++++++|+|+.|+|.. ..++..
T Consensus 21 ~~~v~iiG~G~iG~~~a~~l~~~g~~v~v~~r~~~~~~~~a~~~~~~~~~~~~~~~~~~~~Divi~at~~~---~~~~~~ 97 (144)
T 3oj0_A 21 GNKILLVGNGMLASEIAPYFSYPQYKVTVAGRNIDHVRAFAEKYEYEYVLINDIDSLIKNNDVIITATSSK---TPIVEE 97 (144)
T ss_dssp CCEEEEECCSHHHHHHGGGCCTTTCEEEEEESCHHHHHHHHHHHTCEEEECSCHHHHHHTCSEEEECSCCS---SCSBCG
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHHhCCceEeecCHHHHhcCCCEEEEeCCCC---CcEeeH
Confidence 899999999999999999999999999999987632 234555654 237889999999999999965 234444
Q ss_pred hHhccCCCceEEEEccCC
Q 007512 272 ETFGKMKKGVRIINVARG 289 (600)
Q Consensus 272 ~~l~~mk~gailvNvarg 289 (600)
..+++|.+++|++..
T Consensus 98 ---~~l~~g~~vid~~~p 112 (144)
T 3oj0_A 98 ---RSLMPGKLFIDLGNP 112 (144)
T ss_dssp ---GGCCTTCEEEECCSS
T ss_pred ---HHcCCCCEEEEccCC
Confidence 446889999999864
|
| >3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A* | Back alignment and structure |
|---|
Probab=98.53 E-value=2.1e-07 Score=100.54 Aligned_cols=115 Identities=16% Similarity=0.073 Sum_probs=79.7
Q ss_pred ccceeccCCEEEEEecChhHHHHHHHhhcCCCEEEEECCCCChhHHHHc-------------------CCcc-cCHHHHh
Q 007512 190 YVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPADRARAI-------------------GVDL-VSFDEAI 249 (600)
Q Consensus 190 ~~g~~l~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~~~~a~~~-------------------g~~~-~~l~ell 249 (600)
.++++..-++|+|||+|.+|..+|..|.. |++|++||++...-..... ++.. .++++.+
T Consensus 29 ~~~r~~~~mkIaVIGlG~mG~~lA~~La~-G~~V~~~D~~~~~v~~l~~g~~~i~e~~l~~ll~~~~~~l~~ttd~~ea~ 107 (432)
T 3pid_A 29 QMGRGSEFMKITISGTGYVGLSNGVLIAQ-NHEVVALDIVQAKVDMLNQKISPIVDKEIQEYLAEKPLNFRATTDKHDAY 107 (432)
T ss_dssp ------CCCEEEEECCSHHHHHHHHHHHT-TSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHHHH
T ss_pred ccccccCCCEEEEECcCHHHHHHHHHHHc-CCeEEEEecCHHHhhHHhccCCccccccHHHHHhhccCCeEEEcCHHHHH
Confidence 35667777899999999999999999988 9999999987632221112 2232 3688999
Q ss_pred ccCCEEEEecCCCccc-------cccc--cHhHhccCCCceEEEEccCCccccHHHHHHhHhcCCc
Q 007512 250 ATADFISLHMPLTPAT-------SKVL--NDETFGKMKKGVRIINVARGGVIDEEALVRALDSGRV 306 (600)
Q Consensus 250 ~~aDvV~l~~Pl~~~t-------~~li--~~~~l~~mk~gailvNvarg~ivde~aL~~aL~~g~i 306 (600)
++||+|++|+|...+. ..+. -+.... |++|+++|+.+...+-..+.+.+.+.+..+
T Consensus 108 ~~aDvViiaVPt~~~~~~~~~Dl~~V~~v~~~i~~-l~~g~iVV~~STv~pgtt~~l~~~l~~~~v 172 (432)
T 3pid_A 108 RNADYVIIATPTDYDPKTNYFNTSTVEAVIRDVTE-INPNAVMIIKSTIPVGFTRDIKERLGIDNV 172 (432)
T ss_dssp TTCSEEEECCCCEEETTTTEEECHHHHHHHHHHHH-HCTTSEEEECSCCCTTHHHHHHHHHTCCCE
T ss_pred hCCCEEEEeCCCccccccccccHHHHHHHHHHHHh-cCCCcEEEEeCCCChHHHHHHHHHHhhccE
Confidence 9999999999954211 1121 133445 899999999998777667778777766544
|
| >1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A* | Back alignment and structure |
|---|
Probab=98.50 E-value=1.1e-06 Score=90.27 Aligned_cols=114 Identities=15% Similarity=0.158 Sum_probs=76.0
Q ss_pred CEEEEEecChhHHHHHHHhhcCCCEEEEECCCCC-hhHHH-----------HcC------------------Cc-ccCHH
Q 007512 198 KTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAP-ADRAR-----------AIG------------------VD-LVSFD 246 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~-~~~a~-----------~~g------------------~~-~~~l~ 246 (600)
++|+|||+|.||..+|..+...|++|++||++.. .+.+. +.| +. ..+++
T Consensus 16 ~~I~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~ 95 (302)
T 1f0y_A 16 KHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATSTDAA 95 (302)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEESCHH
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCccccchhhHHHHHhceEEecCHH
Confidence 6899999999999999999988999999998752 22211 122 12 23677
Q ss_pred HHhccCCEEEEecCCCccccccccHhHhccCCCceEEEEccCCccccHHHHHHhHhc-CCceEEEEeccC
Q 007512 247 EAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVIDEEALVRALDS-GRVAQAALDVFT 315 (600)
Q Consensus 247 ell~~aDvV~l~~Pl~~~t~~li~~~~l~~mk~gailvNvarg~ivde~aL~~aL~~-g~i~ga~lDv~~ 315 (600)
+.+++||+|++++|...+.+.-+-++....++++++|+....+- ....+.+.+.. .++ .+.+.+.
T Consensus 96 ~~~~~aD~Vi~avp~~~~~~~~v~~~l~~~~~~~~iv~s~ts~i--~~~~l~~~~~~~~~~--~g~h~~~ 161 (302)
T 1f0y_A 96 SVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSSL--QITSIANATTRQDRF--AGLHFFN 161 (302)
T ss_dssp HHTTSCSEEEECCCSCHHHHHHHHHHHTTTSCTTCEEEECCSSS--CHHHHHTTSSCGGGE--EEEEECS
T ss_pred HhhcCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCC--CHHHHHHhcCCcccE--EEEecCC
Confidence 78999999999999654433333334445678899988655543 23455554432 234 4555554
|
| >3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579} | Back alignment and structure |
|---|
Probab=98.47 E-value=1.6e-07 Score=93.76 Aligned_cols=102 Identities=19% Similarity=0.301 Sum_probs=74.0
Q ss_pred CEEEEEecChhHHHHHHHhhcCCC----EEEEECCCCC-hhHH-HHcCCccc-CHHHHhccCCEEEEecCCCcccccccc
Q 007512 198 KTLAVLGFGKVGSEVARRAKGLGM----HVIAHDPYAP-ADRA-RAIGVDLV-SFDEAIATADFISLHMPLTPATSKVLN 270 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~g~----~V~~~d~~~~-~~~a-~~~g~~~~-~l~ell~~aDvV~l~~Pl~~~t~~li~ 270 (600)
++|||||+|.||+.+|+.|...|+ +|.+||++.. .+.. .+.|+... +.++++++||+|++|+|. .....++
T Consensus 3 ~~i~iIG~G~mG~~~a~~l~~~g~~~~~~V~~~~r~~~~~~~~~~~~g~~~~~~~~e~~~~aDvVilav~~-~~~~~v~- 80 (247)
T 3gt0_A 3 KQIGFIGCGNMGMAMIGGMINKNIVSSNQIICSDLNTANLKNASEKYGLTTTTDNNEVAKNADILILSIKP-DLYASII- 80 (247)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTSSCGGGEEEECSCHHHHHHHHHHHCCEECSCHHHHHHHCSEEEECSCT-TTHHHHC-
T ss_pred CeEEEECccHHHHHHHHHHHhCCCCCCCeEEEEeCCHHHHHHHHHHhCCEEeCChHHHHHhCCEEEEEeCH-HHHHHHH-
Confidence 689999999999999999999898 9999999763 2333 34577654 789999999999999983 3344444
Q ss_pred HhHhccCCCceEEEEccCCccccHHHHHHhHhc
Q 007512 271 DETFGKMKKGVRIINVARGGVIDEEALVRALDS 303 (600)
Q Consensus 271 ~~~l~~mk~gailvNvarg~ivde~aL~~aL~~ 303 (600)
++....++++.++|.+..|- ..+.+.+.+..
T Consensus 81 ~~l~~~l~~~~~vvs~~~gi--~~~~l~~~~~~ 111 (247)
T 3gt0_A 81 NEIKEIIKNDAIIVTIAAGK--SIESTENAFNK 111 (247)
T ss_dssp ---CCSSCTTCEEEECSCCS--CHHHHHHHHCS
T ss_pred HHHHhhcCCCCEEEEecCCC--CHHHHHHHhCC
Confidence 33445578898888665543 34455555544
|
| >2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A* | Back alignment and structure |
|---|
Probab=98.44 E-value=2e-07 Score=96.91 Aligned_cols=104 Identities=17% Similarity=0.297 Sum_probs=77.8
Q ss_pred cCCEEEEEecChhHHHHHHHhhcCC----CEEEEECCCCC---hhHHHHcCCccc-CHHHHhccCCEEEEecCCCccccc
Q 007512 196 VGKTLAVLGFGKVGSEVARRAKGLG----MHVIAHDPYAP---ADRARAIGVDLV-SFDEAIATADFISLHMPLTPATSK 267 (600)
Q Consensus 196 ~gktiGIIGlG~IG~~vA~~l~~~g----~~V~~~d~~~~---~~~a~~~g~~~~-~l~ell~~aDvV~l~~Pl~~~t~~ 267 (600)
..++|||||+|.||+.+|..|...| .+|.+||+... .+...+.|+... +..+++++||+|++|+| ......
T Consensus 21 ~~mkI~iIG~G~mG~ala~~L~~~G~~~~~~V~v~~r~~~~~~~~~l~~~G~~~~~~~~e~~~~aDvVilav~-~~~~~~ 99 (322)
T 2izz_A 21 QSMSVGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPDMDLATVSALRKMGVKLTPHNKETVQHSDVLFLAVK-PHIIPF 99 (322)
T ss_dssp -CCCEEEESCSHHHHHHHHHHHHTTSSCGGGEEEECSCTTSHHHHHHHHHTCEEESCHHHHHHHCSEEEECSC-GGGHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCCcceEEEECCCccHHHHHHHHHcCCEEeCChHHHhccCCEEEEEeC-HHHHHH
Confidence 3458999999999999999999888 79999998864 334456687654 78889999999999999 455555
Q ss_pred cccHhHhccCCCceEEEEccCCccccHHHHHHhHhc
Q 007512 268 VLNDETFGKMKKGVRIINVARGGVIDEEALVRALDS 303 (600)
Q Consensus 268 li~~~~l~~mk~gailvNvarg~ivde~aL~~aL~~ 303 (600)
++. +....++++.+||+++.|-- .+.+.+.+.+
T Consensus 100 vl~-~l~~~l~~~~ivvs~s~gi~--~~~l~~~l~~ 132 (322)
T 2izz_A 100 ILD-EIGADIEDRHIVVSCAAGVT--ISSIEKKLSA 132 (322)
T ss_dssp HHH-HHGGGCCTTCEEEECCTTCC--HHHHHHHHHT
T ss_pred HHH-HHHhhcCCCCEEEEeCCCCC--HHHHHHHHhh
Confidence 553 34456889999999976543 3445555543
|
| >2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A | Back alignment and structure |
|---|
Probab=98.42 E-value=4.5e-07 Score=90.80 Aligned_cols=99 Identities=15% Similarity=0.233 Sum_probs=73.7
Q ss_pred CEEEEEecChhHHHHHHHhhcCCCEEEEECCCCC-hhHHH-HcCCccc-CHHHHhccCCEEEEecCCCccccccccHhHh
Q 007512 198 KTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAP-ADRAR-AIGVDLV-SFDEAIATADFISLHMPLTPATSKVLNDETF 274 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~-~~~a~-~~g~~~~-~l~ell~~aDvV~l~~Pl~~~t~~li~~~~l 274 (600)
++|||||+|.||+.+++.|...|.+|.+||++.. .+... ..|+... +++++++++|+|++|+| .... .+.+
T Consensus 4 m~i~iiG~G~mG~~~a~~l~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~D~Vi~~v~-~~~~-----~~v~ 77 (259)
T 2ahr_A 4 MKIGIIGVGKMASAIIKGLKQTPHELIISGSSLERSKEIAEQLALPYAMSHQDLIDQVDLVILGIK-PQLF-----ETVL 77 (259)
T ss_dssp CEEEEECCSHHHHHHHHHHTTSSCEEEEECSSHHHHHHHHHHHTCCBCSSHHHHHHTCSEEEECSC-GGGH-----HHHH
T ss_pred cEEEEECCCHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHHcCCEeeCCHHHHHhcCCEEEEEeC-cHhH-----HHHH
Confidence 5899999999999999999988999999998763 22222 3477643 78899999999999999 4433 3344
Q ss_pred ccCCCceEEEEccCCccccHHHHHHhHhcC
Q 007512 275 GKMKKGVRIINVARGGVIDEEALVRALDSG 304 (600)
Q Consensus 275 ~~mk~gailvNvarg~ivde~aL~~aL~~g 304 (600)
..+++|.+++++..|-- .+.+.+.+..+
T Consensus 78 ~~l~~~~~vv~~~~~~~--~~~l~~~~~~~ 105 (259)
T 2ahr_A 78 KPLHFKQPIISMAAGIS--LQRLATFVGQD 105 (259)
T ss_dssp TTSCCCSCEEECCTTCC--HHHHHHHHCTT
T ss_pred HHhccCCEEEEeCCCCC--HHHHHHhcCCC
Confidence 45678999999976543 34455555543
|
| >3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=98.40 E-value=5.2e-07 Score=89.65 Aligned_cols=70 Identities=9% Similarity=0.160 Sum_probs=56.9
Q ss_pred CCEEEEEecChhHHHHHHHhhcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEecCCCccccccccHhHhcc
Q 007512 197 GKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPADRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVLNDETFGK 276 (600)
Q Consensus 197 gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Pl~~~t~~li~~~~l~~ 276 (600)
.++|||||+|+||+++|+.|+..|++|.+||+. ++ +++|| ++|+|.. ....++ .+....
T Consensus 6 ~mkI~IIG~G~~G~sLA~~L~~~G~~V~~~~~~----------------~~-~~~aD--ilavP~~-ai~~vl-~~l~~~ 64 (232)
T 3dfu_A 6 RLRVGIFDDGSSTVNMAEKLDSVGHYVTVLHAP----------------ED-IRDFE--LVVIDAH-GVEGYV-EKLSAF 64 (232)
T ss_dssp CCEEEEECCSCCCSCHHHHHHHTTCEEEECSSG----------------GG-GGGCS--EEEECSS-CHHHHH-HHHHTT
T ss_pred CcEEEEEeeCHHHHHHHHHHHHCCCEEEEecCH----------------HH-hccCC--EEEEcHH-HHHHHH-HHHHHh
Confidence 468999999999999999999999999999972 22 57899 8999965 455555 344556
Q ss_pred CCCceEEEEcc
Q 007512 277 MKKGVRIINVA 287 (600)
Q Consensus 277 mk~gailvNva 287 (600)
+++|++++|++
T Consensus 65 l~~g~ivvd~s 75 (232)
T 3dfu_A 65 ARRGQMFLHTS 75 (232)
T ss_dssp CCTTCEEEECC
T ss_pred cCCCCEEEEEC
Confidence 89999999974
|
| >3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.40 E-value=7.7e-07 Score=97.76 Aligned_cols=128 Identities=23% Similarity=0.243 Sum_probs=84.8
Q ss_pred CCEEEEEecChhHHHHHHHhhcCCCEEEEECCCCC-hhHHHH-----------cCC-------------c-ccCHHHHhc
Q 007512 197 GKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAP-ADRARA-----------IGV-------------D-LVSFDEAIA 250 (600)
Q Consensus 197 gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~-~~~a~~-----------~g~-------------~-~~~l~ell~ 250 (600)
-++|||||+|.||+.+|..+...|++|++||++.. .+.+.+ .|. . ..+++ .++
T Consensus 5 ~~kVgVIGaG~MG~~IA~~la~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~ 83 (483)
T 3mog_A 5 VQTVAVIGSGTMGAGIAEVAASHGHQVLLYDISAEALTRAIDGIHARLNSRVTRGKLTAETCERTLKRLIPVTDIH-ALA 83 (483)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHTTTTTTSSCHHHHHHHHHTEEEECCGG-GGG
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceeEeCCHH-Hhc
Confidence 35899999999999999999999999999998762 222221 221 1 12454 689
Q ss_pred cCCEEEEecCCCccccccccHhHhccCCCceEE-EEccCCccccHHHHHHhHhcCCceEEEEeccCCCCCCCCCccccCC
Q 007512 251 TADFISLHMPLTPATSKVLNDETFGKMKKGVRI-INVARGGVIDEEALVRALDSGRVAQAALDVFTEEPPPADSKLVQHE 329 (600)
Q Consensus 251 ~aDvV~l~~Pl~~~t~~li~~~~l~~mk~gail-vNvarg~ivde~aL~~aL~~g~i~ga~lDv~~~EP~~~~~~L~~~~ 329 (600)
+||+|+.|+|...+.+.-+-++....++++++| +|++.-.+ ..+.+.+.. .-.-.+++.|.+-|. . +
T Consensus 84 ~aDlVIeAVpe~~~vk~~v~~~l~~~~~~~~IlasntSti~i---~~ia~~~~~-p~~~ig~hf~~Pa~v---~-----~ 151 (483)
T 3mog_A 84 AADLVIEAASERLEVKKALFAQLAEVCPPQTLLTTNTSSISI---TAIAAEIKN-PERVAGLHFFNPAPV---M-----K 151 (483)
T ss_dssp GCSEEEECCCCCHHHHHHHHHHHHHHSCTTCEEEECCSSSCH---HHHTTTSSS-GGGEEEEEECSSTTT---C-----C
T ss_pred CCCEEEEcCCCcHHHHHHHHHHHHHhhccCcEEEecCCCCCH---HHHHHHccC-ccceEEeeecChhhh---C-----C
Confidence 999999999977655443334455668999999 57765433 455444432 222367777765433 2 3
Q ss_pred cEEEcCCC
Q 007512 330 RVTVTPHL 337 (600)
Q Consensus 330 nvilTPH~ 337 (600)
-+.+.|+.
T Consensus 152 Lvevv~g~ 159 (483)
T 3mog_A 152 LVEVVSGL 159 (483)
T ss_dssp EEEEEECS
T ss_pred eEEEecCC
Confidence 45566654
|
| >1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A* | Back alignment and structure |
|---|
Probab=98.37 E-value=3.1e-07 Score=91.98 Aligned_cols=99 Identities=20% Similarity=0.267 Sum_probs=71.3
Q ss_pred CEEEEEecChhHHHHHHHhhcCC-CEEEEECCCCC-hhHHHH-cCCccc-CHHHHhccCCEEEEecCCCccccccccHhH
Q 007512 198 KTLAVLGFGKVGSEVARRAKGLG-MHVIAHDPYAP-ADRARA-IGVDLV-SFDEAIATADFISLHMPLTPATSKVLNDET 273 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~g-~~V~~~d~~~~-~~~a~~-~g~~~~-~l~ell~~aDvV~l~~Pl~~~t~~li~~~~ 273 (600)
++|||||+|.||+.+|+.|...| .+|.+||++.. .+...+ .|+... ++++++ +||+|++|+| ......++..
T Consensus 1 m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~~~~g~~~~~~~~~~~-~~D~vi~~v~-~~~~~~v~~~-- 76 (263)
T 1yqg_A 1 MNVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGAEKRERLEKELGVETSATLPELH-SDDVLILAVK-PQDMEAACKN-- 76 (263)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCSCEEEEECSSHHHHHHHHHHTCCEEESSCCCCC-TTSEEEECSC-HHHHHHHHTT--
T ss_pred CEEEEECchHHHHHHHHHHHHCCCCeEEEECCCHHHHHHHHHhcCCEEeCCHHHHh-cCCEEEEEeC-chhHHHHHHH--
Confidence 47999999999999999999888 99999998752 233333 477643 677788 9999999999 5444444321
Q ss_pred hccCCCceEEEEccCCccccHHHHHHhHhcC
Q 007512 274 FGKMKKGVRIINVARGGVIDEEALVRALDSG 304 (600)
Q Consensus 274 l~~mk~gailvNvarg~ivde~aL~~aL~~g 304 (600)
+.. + +.++++++.|-- .+.+.+.+..+
T Consensus 77 l~~-~-~~ivv~~~~g~~--~~~l~~~~~~~ 103 (263)
T 1yqg_A 77 IRT-N-GALVLSVAAGLS--VGTLSRYLGGT 103 (263)
T ss_dssp CCC-T-TCEEEECCTTCC--HHHHHHHTTSC
T ss_pred hcc-C-CCEEEEecCCCC--HHHHHHHcCCC
Confidence 222 4 899999966543 35666666654
|
| >3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=98.35 E-value=5.8e-07 Score=91.70 Aligned_cols=109 Identities=16% Similarity=0.186 Sum_probs=79.1
Q ss_pred CCEEEEEecChhHHHHHHHhhcCCC---EEEEECCCCC-hhHHHH-cCCccc-CHHHHhccCCEEEEecCCCcccccccc
Q 007512 197 GKTLAVLGFGKVGSEVARRAKGLGM---HVIAHDPYAP-ADRARA-IGVDLV-SFDEAIATADFISLHMPLTPATSKVLN 270 (600)
Q Consensus 197 gktiGIIGlG~IG~~vA~~l~~~g~---~V~~~d~~~~-~~~a~~-~g~~~~-~l~ell~~aDvV~l~~Pl~~~t~~li~ 270 (600)
.++|||||+|.||+.+|+.+...|+ +|.+||++.. .+...+ .|+... +..+++++||+|++|+|. .....++.
T Consensus 3 ~~~I~iIG~G~mG~aia~~l~~~g~~~~~V~v~dr~~~~~~~l~~~~gi~~~~~~~~~~~~aDvVilav~p-~~~~~vl~ 81 (280)
T 3tri_A 3 TSNITFIGGGNMARNIVVGLIANGYDPNRICVTNRSLDKLDFFKEKCGVHTTQDNRQGALNADVVVLAVKP-HQIKMVCE 81 (280)
T ss_dssp CSCEEEESCSHHHHHHHHHHHHTTCCGGGEEEECSSSHHHHHHHHTTCCEEESCHHHHHSSCSEEEECSCG-GGHHHHHH
T ss_pred CCEEEEEcccHHHHHHHHHHHHCCCCCCeEEEEeCCHHHHHHHHHHcCCEEeCChHHHHhcCCeEEEEeCH-HHHHHHHH
Confidence 4789999999999999999998888 8999999873 333333 477654 788999999999999983 33444442
Q ss_pred HhHhcc-CCCceEEEEccCCccccHHHHHHhHhc-CCceEE
Q 007512 271 DETFGK-MKKGVRIINVARGGVIDEEALVRALDS-GRVAQA 309 (600)
Q Consensus 271 ~~~l~~-mk~gailvNvarg~ivde~aL~~aL~~-g~i~ga 309 (600)
+.-.. ++++.+||++..|-- .+.+.+.+.. .++.++
T Consensus 82 -~l~~~~l~~~~iiiS~~agi~--~~~l~~~l~~~~~vvr~ 119 (280)
T 3tri_A 82 -ELKDILSETKILVISLAVGVT--TPLIEKWLGKASRIVRA 119 (280)
T ss_dssp -HHHHHHHTTTCEEEECCTTCC--HHHHHHHHTCCSSEEEE
T ss_pred -HHHhhccCCCeEEEEecCCCC--HHHHHHHcCCCCeEEEE
Confidence 23333 688888888776543 4566666765 355444
|
| >3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=98.32 E-value=1e-06 Score=95.89 Aligned_cols=105 Identities=19% Similarity=0.215 Sum_probs=74.1
Q ss_pred CEEEEEecChhHHHHHHHhhcCCCEEEEECCCCCh-hHHHH-------------------cC-Ccc-cCHHHHhccCCEE
Q 007512 198 KTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPA-DRARA-------------------IG-VDL-VSFDEAIATADFI 255 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~~-~~a~~-------------------~g-~~~-~~l~ell~~aDvV 255 (600)
++|+|||+|.+|..+|..|...|++|++||++... +...+ .+ +.. .++++++++||+|
T Consensus 3 mkI~VIG~G~vG~~lA~~La~~G~~V~~~D~~~~~v~~l~~g~~~i~e~gl~~~l~~~~~~~~l~~t~d~~ea~~~aDvV 82 (450)
T 3gg2_A 3 LDIAVVGIGYVGLVSATCFAELGANVRCIDTDRNKIEQLNSGTIPIYEPGLEKMIARNVKAGRLRFGTEIEQAVPEADII 82 (450)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTCSCCCSTTHHHHHHHHHHTTSEEEESCHHHHGGGCSEE
T ss_pred CEEEEECcCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHcCCCcccCCCHHHHHHhhcccCcEEEECCHHHHHhcCCEE
Confidence 58999999999999999999999999999987532 22222 11 222 3688889999999
Q ss_pred EEecCCCc---------cccccccHhHhccCCCceEEEEccCCccccHHHHHHhHhc
Q 007512 256 SLHMPLTP---------ATSKVLNDETFGKMKKGVRIINVARGGVIDEEALVRALDS 303 (600)
Q Consensus 256 ~l~~Pl~~---------~t~~li~~~~l~~mk~gailvNvarg~ivde~aL~~aL~~ 303 (600)
++|+|... ..+..+ +.....+++|.++|+++.-.+-..+.+.+.+.+
T Consensus 83 iiaVptp~~~~~~~dl~~v~~v~-~~i~~~l~~g~iVV~~STv~pgt~~~l~~~l~~ 138 (450)
T 3gg2_A 83 FIAVGTPAGEDGSADMSYVLDAA-RSIGRAMSRYILIVTKSTVPVGSYRLIRKAIQE 138 (450)
T ss_dssp EECCCCCBCTTSSBCCHHHHHHH-HHHHHHCCSCEEEEECSCCCTTHHHHHHHHHHH
T ss_pred EEEcCCCcccCCCcChHHHHHHH-HHHHhhCCCCCEEEEeeeCCCcchHHHHHHHHH
Confidence 99999542 222222 344556899999999986444334555554443
|
| >1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.32 E-value=3e-06 Score=92.54 Aligned_cols=113 Identities=19% Similarity=0.210 Sum_probs=74.9
Q ss_pred CCEEEEEecChhHHHHHHHhhcCCCEEEEECCCCC-hhHHHH-----------cC-----------Cc-ccCHHHHhccC
Q 007512 197 GKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAP-ADRARA-----------IG-----------VD-LVSFDEAIATA 252 (600)
Q Consensus 197 gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~-~~~a~~-----------~g-----------~~-~~~l~ell~~a 252 (600)
=++|+|||+|.||..+|..+...|++|++||++.. .+.+.+ .| .. ..++ +.+++|
T Consensus 37 ~~kV~VIGaG~MG~~iA~~la~~G~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~-~~~~~a 115 (463)
T 1zcj_A 37 VSSVGVLGLGTMGRGIAISFARVGISVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRFSSST-KELSTV 115 (463)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEEESCG-GGGTTC
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhhcCCH-HHHCCC
Confidence 36899999999999999999999999999998752 222211 11 01 1255 568899
Q ss_pred CEEEEecCCCccccccccHhHhccCCCceEEEEccCCccccHHHHHHhHhc-CCceEEEEecc
Q 007512 253 DFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVIDEEALVRALDS-GRVAQAALDVF 314 (600)
Q Consensus 253 DvV~l~~Pl~~~t~~li~~~~l~~mk~gailvNvarg~ivde~aL~~aL~~-g~i~ga~lDv~ 314 (600)
|+|+.|+|...+.+.-+-++....++++++|++...+- ....+.+.+.. .++ .+.+.|
T Consensus 116 DlVIeaVpe~~~~k~~v~~~l~~~~~~~~ii~snTs~~--~~~~la~~~~~~~~~--ig~hf~ 174 (463)
T 1zcj_A 116 DLVVEAVFEDMNLKKKVFAELSALCKPGAFLCTNTSAL--NVDDIASSTDRPQLV--IGTHFF 174 (463)
T ss_dssp SEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSSS--CHHHHHTTSSCGGGE--EEEEEC
T ss_pred CEEEEcCCCCHHHHHHHHHHHHhhCCCCeEEEeCCCCc--CHHHHHHHhcCCcce--EEeecC
Confidence 99999999654333323234445689999998744433 33356555543 233 566666
|
| >2i99_A MU-crystallin homolog; thyroid hormine binding protein, oxidoreductase; HET: NDP; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.31 E-value=1.3e-06 Score=90.47 Aligned_cols=90 Identities=22% Similarity=0.189 Sum_probs=69.0
Q ss_pred cCCEEEEEecChhHHHHHHHhhc-CCC-EEEEECCCCCh-h-HHHHcC--Ccc-cCHHHHhccCCEEEEecCCCcccccc
Q 007512 196 VGKTLAVLGFGKVGSEVARRAKG-LGM-HVIAHDPYAPA-D-RARAIG--VDL-VSFDEAIATADFISLHMPLTPATSKV 268 (600)
Q Consensus 196 ~gktiGIIGlG~IG~~vA~~l~~-~g~-~V~~~d~~~~~-~-~a~~~g--~~~-~~l~ell~~aDvV~l~~Pl~~~t~~l 268 (600)
.+++|||||+|.+|+.+++.+.. +|. +|.+||++... + .+...+ +.. .++++++++||+|++|+|.. ..+
T Consensus 134 ~~~~igiIG~G~~g~~~a~~l~~~~g~~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~e~v~~aDiVi~atp~~---~~v 210 (312)
T 2i99_A 134 SSEVLCILGAGVQAYSHYEIFTEQFSFKEVRIWNRTKENAEKFADTVQGEVRVCSSVQEAVAGADVIITVTLAT---EPI 210 (312)
T ss_dssp TCCEEEEECCSHHHHHHHHHHHHHCCCSEEEEECSSHHHHHHHHHHSSSCCEECSSHHHHHTTCSEEEECCCCS---SCC
T ss_pred CCcEEEEECCcHHHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHhhCCeEEeCCHHHHHhcCCEEEEEeCCC---Ccc
Confidence 46799999999999999999874 476 99999987622 2 233335 543 47999999999999999943 455
Q ss_pred ccHhHhccCCCceEEEEccCCcc
Q 007512 269 LNDETFGKMKKGVRIINVARGGV 291 (600)
Q Consensus 269 i~~~~l~~mk~gailvNvarg~i 291 (600)
+.. ..+++|.+|++++....
T Consensus 211 ~~~---~~l~~g~~vi~~g~~~p 230 (312)
T 2i99_A 211 LFG---EWVKPGAHINAVGASRP 230 (312)
T ss_dssp BCG---GGSCTTCEEEECCCCST
T ss_pred cCH---HHcCCCcEEEeCCCCCC
Confidence 554 46899999999976544
|
| >3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=98.30 E-value=7.7e-06 Score=83.28 Aligned_cols=156 Identities=19% Similarity=0.249 Sum_probs=102.4
Q ss_pred ccCCCHhHHhhhc------CCceEEEEcCCC--CCCH-HHHhccCCCceEEEEcCcccCccChhHHHhCCceeecCCCCC
Q 007512 84 AYNLSPEELCTKI------SLCDALIVRSGT--KVNR-DVFESSAGRLKVVGRAGVGIDNVDLAAATEFGCLVVNAPTAN 154 (600)
Q Consensus 84 ~~~~~~~el~~~i------~~~d~li~~~~~--~~~~-~~l~~~~~~Lk~I~~~g~G~d~iD~~aa~~~GI~V~n~p~~~ 154 (600)
....+++||.+.+ .++|++++..+- ++++ .+++.-.| -| -+|.+-. ...|-.+.+.++..
T Consensus 71 p~~~s~~ell~~I~~lN~d~~v~GIlvqlPlp~~id~~~v~~~I~p-~K-------DVDg~~~---~N~g~l~~g~~~g~ 139 (285)
T 3p2o_A 71 NENITQNELLALINTLNHDDSVHGILVQLPLPDHICKDLILESIIS-SK-------DVDGFHP---INVGYLNLGLESGF 139 (285)
T ss_dssp CTTCCHHHHHHHHHHHHHCTTCCEEEECSCCCTTSCHHHHHHHSCG-GG-------CTTCCSH---HHHHHHHTTCCSSC
T ss_pred CCCCCHHHHHHHHHHHhCCCCCCEEEecCCCCCCcCHHHHHhhCCc-cc-------ccccCCH---hhhhhhhcCCCCCC
Confidence 3446788887766 578999998642 3443 34454322 11 1233211 01111222233322
Q ss_pred hHHHHHHHHHHHHHHHhchHHHHHHHHcCccccccccceeccCCEEEEEecCh-hHHHHHHHhhcCCCEEEEECCCCChh
Q 007512 155 TVAAAEHGIALLAAMARNVAQADASVKAGKWQRNKYVGVSLVGKTLAVLGFGK-VGSEVARRAKGLGMHVIAHDPYAPAD 233 (600)
Q Consensus 155 ~~~vAE~~l~lll~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktiGIIGlG~-IG~~vA~~l~~~g~~V~~~d~~~~~~ 233 (600)
..+++.-++-++ + ..+.++.||++.|||.|. +|+.+|..|...|++|..++++.
T Consensus 140 ~PcTp~gv~~lL----~------------------~~~i~l~Gk~vvVvGrs~iVG~p~A~lL~~~gAtVtv~h~~t--- 194 (285)
T 3p2o_A 140 LPCTPLGVMKLL----K------------------AYEIDLEGKDAVIIGASNIVGRPMATMLLNAGATVSVCHIKT--- 194 (285)
T ss_dssp CCHHHHHHHHHH----H------------------HTTCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC---
T ss_pred CCCCHHHHHHHH----H------------------HhCCCCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCc---
Confidence 334554444322 1 246789999999999988 69999999999999999998653
Q ss_pred HHHHcCCcccCHHHHhccCCEEEEecCCCccccccccHhHhccCCCceEEEEccCCcc
Q 007512 234 RARAIGVDLVSFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGV 291 (600)
Q Consensus 234 ~a~~~g~~~~~l~ell~~aDvV~l~~Pl~~~t~~li~~~~l~~mk~gailvNvarg~i 291 (600)
.++++.+++||+|+.++|. .+++..++ +|||+++||+|.-.+
T Consensus 195 ---------~~L~~~~~~ADIVI~Avg~----p~~I~~~~---vk~GavVIDVgi~~~ 236 (285)
T 3p2o_A 195 ---------KDLSLYTRQADLIIVAAGC----VNLLRSDM---VKEGVIVVDVGINRL 236 (285)
T ss_dssp ---------SCHHHHHTTCSEEEECSSC----TTCBCGGG---SCTTEEEEECCCEEC
T ss_pred ---------hhHHHHhhcCCEEEECCCC----CCcCCHHH---cCCCeEEEEeccCcc
Confidence 2588999999999999983 34576654 599999999996553
|
| >4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea} | Back alignment and structure |
|---|
Probab=98.29 E-value=2e-06 Score=93.54 Aligned_cols=105 Identities=16% Similarity=0.158 Sum_probs=75.3
Q ss_pred CEEEEEecChhHHHHHHHhhcCCCEEEEECCCCChhHHHHcC---------------------Ccc-cCHHHHhccCCEE
Q 007512 198 KTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPADRARAIG---------------------VDL-VSFDEAIATADFI 255 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~~~~a~~~g---------------------~~~-~~l~ell~~aDvV 255 (600)
-+|+|||+|.+|..+|..|...|++|++||++...-.....| +.. .++.+.+++||+|
T Consensus 9 ~~~~vIGlG~vG~~~A~~La~~G~~V~~~D~~~~kv~~l~~g~~~~~epgl~~~~~~~~~~g~l~~ttd~~ea~~~aDvv 88 (446)
T 4a7p_A 9 VRIAMIGTGYVGLVSGACFSDFGHEVVCVDKDARKIELLHQNVMPIYEPGLDALVASNVKAGRLSFTTDLAEGVKDADAV 88 (446)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHTTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHTTCSEE
T ss_pred eEEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHhcCCCCccCCCHHHHHHhhcccCCEEEECCHHHHHhcCCEE
Confidence 479999999999999999999999999999887432222222 222 3788899999999
Q ss_pred EEecCCCcc----------ccccccHhHhccCCCceEEEEccCCccccHHHHHHhHhc
Q 007512 256 SLHMPLTPA----------TSKVLNDETFGKMKKGVRIINVARGGVIDEEALVRALDS 303 (600)
Q Consensus 256 ~l~~Pl~~~----------t~~li~~~~l~~mk~gailvNvarg~ivde~aL~~aL~~ 303 (600)
++|+|.... .+..+ +.....|++|.++|+++.-.+-..+.+.+.+.+
T Consensus 89 ii~Vptp~~~~~~~~Dl~~v~~v~-~~i~~~l~~g~iVV~~STv~pgtt~~l~~~l~e 145 (446)
T 4a7p_A 89 FIAVGTPSRRGDGHADLSYVFAAA-REIAENLTKPSVIVTKSTVPVGTGDEVERIIAE 145 (446)
T ss_dssp EECCCCCBCTTTCCBCTHHHHHHH-HHHHHSCCSCCEEEECSCCCTTHHHHHHHHHHH
T ss_pred EEEcCCCCccccCCccHHHHHHHH-HHHHHhcCCCCEEEEeCCCCchHHHHHHHHHHH
Confidence 999984321 12222 345567999999999986554445555555544
|
| >1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A* | Back alignment and structure |
|---|
Probab=98.29 E-value=8.6e-07 Score=96.05 Aligned_cols=105 Identities=15% Similarity=0.182 Sum_probs=74.3
Q ss_pred CEEEEEecChhHHHHHHHhhcCCCEEEEECCCCCh-hHHHH-------------------cC-Ccc-cCHHHHhccCCEE
Q 007512 198 KTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPA-DRARA-------------------IG-VDL-VSFDEAIATADFI 255 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~~-~~a~~-------------------~g-~~~-~~l~ell~~aDvV 255 (600)
++|+|||+|.||..+|..|...|++|++||++... +...+ .| +.. .++++.+++||+|
T Consensus 1 mkI~VIG~G~vG~~~A~~la~~G~~V~~~d~~~~~~~~l~~~~~~i~e~~l~~~~~~~~~~g~l~~t~~~~~~~~~aDvv 80 (436)
T 1mv8_A 1 MRISIFGLGYVGAVCAGCLSARGHEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGRQTGRLSGTTDFKKAVLDSDVS 80 (436)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHHTCSEE
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHhCCCCCcCCCCHHHHHHhhcccCceEEeCCHHHHhccCCEE
Confidence 47999999999999999999999999999987532 22222 22 222 3677889999999
Q ss_pred EEecCCCcc---------ccccccHhHhccCCC---ceEEEEccCCcccc-HHHHHHhHhc
Q 007512 256 SLHMPLTPA---------TSKVLNDETFGKMKK---GVRIINVARGGVID-EEALVRALDS 303 (600)
Q Consensus 256 ~l~~Pl~~~---------t~~li~~~~l~~mk~---gailvNvarg~ivd-e~aL~~aL~~ 303 (600)
++|+|.... ....+ +.....|++ +.++|+++...+-. .+.+.+.+++
T Consensus 81 iiaVptp~~~~~~~dl~~v~~v~-~~i~~~l~~~~~~~iVV~~Stv~~g~t~~~l~~~l~~ 140 (436)
T 1mv8_A 81 FICVGTPSKKNGDLDLGYIETVC-REIGFAIREKSERHTVVVRSTVLPGTVNNVVIPLIED 140 (436)
T ss_dssp EECCCCCBCTTSSBCCHHHHHHH-HHHHHHHTTCCSCCEEEECSCCCTTHHHHTHHHHHHH
T ss_pred EEEcCCCcccCCCcchHHHHHHH-HHHHHHhcccCCCcEEEEeCCcCCCchHHHHHHHHHH
Confidence 999995443 22222 233445788 99999998766544 5556666654
|
| >1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2 | Back alignment and structure |
|---|
Probab=98.26 E-value=9.1e-06 Score=82.79 Aligned_cols=158 Identities=18% Similarity=0.235 Sum_probs=104.6
Q ss_pred EEEccCCCHhHHhhhc------CCceEEEEcCCC--CCCHH-HHhccCCCceEEEEcCcccCccChhHHHhCCceeecCC
Q 007512 81 VDCAYNLSPEELCTKI------SLCDALIVRSGT--KVNRD-VFESSAGRLKVVGRAGVGIDNVDLAAATEFGCLVVNAP 151 (600)
Q Consensus 81 v~~~~~~~~~el~~~i------~~~d~li~~~~~--~~~~~-~l~~~~~~Lk~I~~~g~G~d~iD~~aa~~~GI~V~n~p 151 (600)
..+....+++|+.+.+ .++|++++..+- +++++ +++.-.| -| -+|.+-..- .|=.+.+.+
T Consensus 68 ~~lp~~~s~~ell~~I~~lN~D~~V~GIlvqlPLP~~id~~~i~~~I~p-~K-------DVDG~~p~n---~g~l~~g~~ 136 (288)
T 1b0a_A 68 YDLPETTSEAELLELIDTLNADNTIDGILVQLPLPAGIDNVKVLERIHP-DK-------DVDGFHPYN---VGRLCQRAP 136 (288)
T ss_dssp EEECTTCCHHHHHHHHHHHHTCTTCCEEEECSSCCTTSCHHHHHTTSCT-TT-------CTTCCSHHH---HHHHHTTCC
T ss_pred EECCCCCCHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCCHHHHHhccCC-cc-------CcccCCccc---hhHHhCCCC
Confidence 3344556788887665 578999998643 35544 4443322 12 234332211 111222223
Q ss_pred CCChHHHHHHHHHHHHHHHhchHHHHHHHHcCccccccccceeccCCEEEEEecCh-hHHHHHHHhhcCCCEEEEECCCC
Q 007512 152 TANTVAAAEHGIALLAAMARNVAQADASVKAGKWQRNKYVGVSLVGKTLAVLGFGK-VGSEVARRAKGLGMHVIAHDPYA 230 (600)
Q Consensus 152 ~~~~~~vAE~~l~lll~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktiGIIGlG~-IG~~vA~~l~~~g~~V~~~d~~~ 230 (600)
....++++-++.++ + ..+.++.|+++.|||.|. +|+.+|+.|...|++|..++.+.
T Consensus 137 -~~~PcTp~gi~~ll----~------------------~~~i~l~gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t 193 (288)
T 1b0a_A 137 -RLRPCTPRGIVTLL----E------------------RYNIDTFGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFT 193 (288)
T ss_dssp -SSCCHHHHHHHHHH----H------------------HTTCCCTTCEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSC
T ss_pred -CCCCCcHHHHHHHH----H------------------HcCCCCCCCEEEEECCChHHHHHHHHHHHHCCCeEEEEeCCc
Confidence 23445555544332 1 246789999999999997 59999999999999999998553
Q ss_pred ChhHHHHcCCcccCHHHHhccCCEEEEecCCCccccccccHhHhccCCCceEEEEccCCcc
Q 007512 231 PADRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGV 291 (600)
Q Consensus 231 ~~~~a~~~g~~~~~l~ell~~aDvV~l~~Pl~~~t~~li~~~~l~~mk~gailvNvarg~i 291 (600)
.++.+.+++||+|+.+++.. +++..+. +|+|+++||+|.-.+
T Consensus 194 ------------~~L~~~~~~ADIVI~Avg~p----~lI~~~~---vk~GavVIDVgi~r~ 235 (288)
T 1b0a_A 194 ------------KNLRHHVENADLLIVAVGKP----GFIPGDW---IKEGAIVIDVGINRL 235 (288)
T ss_dssp ------------SCHHHHHHHCSEEEECSCCT----TCBCTTT---SCTTCEEEECCCEEC
T ss_pred ------------hhHHHHhccCCEEEECCCCc----CcCCHHH---cCCCcEEEEccCCcc
Confidence 25889999999999999932 3576665 499999999997554
|
| >1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6 | Back alignment and structure |
|---|
Probab=98.23 E-value=2.4e-06 Score=89.16 Aligned_cols=89 Identities=26% Similarity=0.267 Sum_probs=67.7
Q ss_pred CEEEEEecChhHHHHHHHhhcCCCEEEEECCCCC-hhHHHHc-CC---------------cccCHHHHhccCCEEEEecC
Q 007512 198 KTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAP-ADRARAI-GV---------------DLVSFDEAIATADFISLHMP 260 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~-~~~a~~~-g~---------------~~~~l~ell~~aDvV~l~~P 260 (600)
++|+|||+|.||+.+|..|...|++|.+||++.. .+...+. ++ ...+++++++.+|+|++|+|
T Consensus 5 mki~iiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~v~ 84 (359)
T 1bg6_A 5 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDADVILIVVP 84 (359)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTTCSEEEECSC
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHhcCCeEEeccccccccccceecCCHHHHHhcCCEEEEeCC
Confidence 6899999999999999999999999999998752 3333333 21 12378888999999999999
Q ss_pred CCccccccccHhHhccCCCceEEEEccCC
Q 007512 261 LTPATSKVLNDETFGKMKKGVRIINVARG 289 (600)
Q Consensus 261 l~~~t~~li~~~~l~~mk~gailvNvarg 289 (600)
... +..++ +.....++++++++++ .|
T Consensus 85 ~~~-~~~~~-~~l~~~l~~~~~vv~~-~~ 110 (359)
T 1bg6_A 85 AIH-HASIA-ANIASYISEGQLIILN-PG 110 (359)
T ss_dssp GGG-HHHHH-HHHGGGCCTTCEEEES-SC
T ss_pred chH-HHHHH-HHHHHhCCCCCEEEEc-CC
Confidence 544 44444 3445568999999998 44
|
| >1y7p_A Hypothetical protein AF1403; structural genomics, protein structure initiative, PSI, alpha-beta-alpha sandwich; HET: RIP; 1.90A {Archaeoglobus fulgidus} SCOP: c.23.1.7 d.58.18.12 | Back alignment and structure |
|---|
Probab=98.20 E-value=2.5e-06 Score=82.90 Aligned_cols=72 Identities=13% Similarity=0.153 Sum_probs=61.1
Q ss_pred cEEEEEecCCCCChhhHHhhhhcCCccccceEeeeecCCC---cEEEEEEeCCCCcHHHHHHHhcCCCcceEEEe
Q 007512 527 SIILCRQVDQPGMIGTVGSILGSENVNVSFMSVGRVAPRK---HAVMAIGVDEQPRKETLKKIGDVPAIEEFVFL 598 (600)
Q Consensus 527 ~~Liv~~~D~pG~Ia~V~~iL~~~~INIa~m~v~R~~~g~---~al~~i~~D~~~~~~~l~~l~~~~~v~~v~~i 598 (600)
-+|.+.+.|+||+++.|++.|+++++||.+|+..+..+|+ .|.+.+++++...++++++|+++|+|.+++.+
T Consensus 5 VtL~I~a~DRpGLLsDIt~vLAe~kiNIltIn~~~~~kG~~ng~A~I~IEV~d~~Le~LL~kLrkI~gV~~V~Rv 79 (223)
T 1y7p_A 5 RGLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIKHGEHEGKALIYFEIEGGDFEKILERVKTFDYIIEIEEE 79 (223)
T ss_dssp EEEEEEEECCTTHHHHHHHHCC----CEEEEEEEECCSSTTTTEEEEEEEECSSCHHHHHHHHHTCTTEEEEEEE
T ss_pred EEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEEccccCCcCCEEEEEEEECCCCHHHHHHHHhCCCCeeEEEEE
Confidence 3678889999999999999999999999999998876544 68899999999667999999999999999876
|
| >1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A* | Back alignment and structure |
|---|
Probab=98.20 E-value=1.1e-06 Score=85.16 Aligned_cols=114 Identities=15% Similarity=0.222 Sum_probs=78.1
Q ss_pred CEEEEEe-cChhHHHHHHHhhcCCCEEEEECCCCCh-hHHH-HcC-------CcccCHHHHhccCCEEEEecCCCccccc
Q 007512 198 KTLAVLG-FGKVGSEVARRAKGLGMHVIAHDPYAPA-DRAR-AIG-------VDLVSFDEAIATADFISLHMPLTPATSK 267 (600)
Q Consensus 198 ktiGIIG-lG~IG~~vA~~l~~~g~~V~~~d~~~~~-~~a~-~~g-------~~~~~l~ell~~aDvV~l~~Pl~~~t~~ 267 (600)
++|+||| .|.||+.+++.|...|++|.++|++... +... ..+ +...++++++++||+|++++| ...+..
T Consensus 1 m~i~iiGa~G~~G~~ia~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~Vi~~~~-~~~~~~ 79 (212)
T 1jay_A 1 MRVALLGGTGNLGKGLALRLATLGHEIVVGSRREEKAEAKAAEYRRIAGDASITGMKNEDAAEACDIAVLTIP-WEHAID 79 (212)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSHHHHHHHHHHHHHHHSSCCEEEEEHHHHHHHCSEEEECSC-HHHHHH
T ss_pred CeEEEEcCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccccccCCCChhhHHHHHhcCCEEEEeCC-hhhHHH
Confidence 4799999 9999999999999999999999987522 2221 112 333468888999999999999 344444
Q ss_pred cccHhHhccCCCceEEEEccCCcccc------------HHHHHHhHhcCCceEEEEeccCCCC
Q 007512 268 VLNDETFGKMKKGVRIINVARGGVID------------EEALVRALDSGRVAQAALDVFTEEP 318 (600)
Q Consensus 268 li~~~~l~~mk~gailvNvarg~ivd------------e~aL~~aL~~g~i~ga~lDv~~~EP 318 (600)
++. +....++ +.+++|++.|--.+ .+.+.+.+...+ .++.+.+.|
T Consensus 80 ~~~-~l~~~~~-~~~vi~~~~g~~~~~~~~~~~~g~~~~~~l~~~~~~~~----~v~~~~~~~ 136 (212)
T 1jay_A 80 TAR-DLKNILR-EKIVVSPLVPVSRGAKGFTYSSERSAAEIVAEVLESEK----VVSALHTIP 136 (212)
T ss_dssp HHH-HTHHHHT-TSEEEECCCCEECCTTCCEECCSSCHHHHHHHHHTCSC----EEECCTTCC
T ss_pred HHH-HHHHHcC-CCEEEEcCCCcCcCCceeecCCCCcHHHHHHHhCCCCe----EEEEccchH
Confidence 443 2223354 89999999765421 466666665433 346666654
|
| >2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.19 E-value=1.3e-06 Score=87.44 Aligned_cols=98 Identities=17% Similarity=0.183 Sum_probs=69.5
Q ss_pred CCEEEEEecChhHHHHHHHhhcCC----CEEEEECCCCChhHHHHcCCccc-CHHHHhccCCEEEEecCCCccccccccH
Q 007512 197 GKTLAVLGFGKVGSEVARRAKGLG----MHVIAHDPYAPADRARAIGVDLV-SFDEAIATADFISLHMPLTPATSKVLND 271 (600)
Q Consensus 197 gktiGIIGlG~IG~~vA~~l~~~g----~~V~~~d~~~~~~~a~~~g~~~~-~l~ell~~aDvV~l~~Pl~~~t~~li~~ 271 (600)
.++|||||+|.||+.+|+.|...| .+|.+||++... .|+... +.++++++||+|++|+| ......++.
T Consensus 4 ~m~i~iiG~G~mG~~~a~~l~~~g~~~~~~v~~~~~~~~~-----~g~~~~~~~~~~~~~~D~vi~~v~-~~~~~~v~~- 76 (262)
T 2rcy_A 4 NIKLGFMGLGQMGSALAHGIANANIIKKENLFYYGPSKKN-----TTLNYMSSNEELARHCDIIVCAVK-PDIAGSVLN- 76 (262)
T ss_dssp SSCEEEECCSHHHHHHHHHHHHHTSSCGGGEEEECSSCCS-----SSSEECSCHHHHHHHCSEEEECSC-TTTHHHHHH-
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCCCCCeEEEEeCCccc-----CceEEeCCHHHHHhcCCEEEEEeC-HHHHHHHHH-
Confidence 468999999999999999998777 689999987643 466544 78889999999999999 444555543
Q ss_pred hHhccCCCceEEEEccCCccccHHHHHHhHhcC
Q 007512 272 ETFGKMKKGVRIINVARGGVIDEEALVRALDSG 304 (600)
Q Consensus 272 ~~l~~mk~gailvNvarg~ivde~aL~~aL~~g 304 (600)
+....++++.++++++.-+ .+.+.+.+..+
T Consensus 77 ~l~~~l~~~~vv~~~~gi~---~~~l~~~~~~~ 106 (262)
T 2rcy_A 77 NIKPYLSSKLLISICGGLN---IGKLEEMVGSE 106 (262)
T ss_dssp HSGGGCTTCEEEECCSSCC---HHHHHHHHCTT
T ss_pred HHHHhcCCCEEEEECCCCC---HHHHHHHhCCC
Confidence 2334455555555554333 34555555543
|
| >1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A* | Back alignment and structure |
|---|
Probab=98.19 E-value=5.3e-06 Score=88.96 Aligned_cols=106 Identities=15% Similarity=0.132 Sum_probs=75.0
Q ss_pred CEEEEEecChhHHHHHHHhhcCCCEEEEECCCCCh-hHHHHcCC------------------cc-cCHHHHhccCCEEEE
Q 007512 198 KTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPA-DRARAIGV------------------DL-VSFDEAIATADFISL 257 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~~-~~a~~~g~------------------~~-~~l~ell~~aDvV~l 257 (600)
++|+|||+|.||..+|..|.. |.+|++||++... +...+.+. .. .++.+.+++||+|++
T Consensus 1 MkI~VIG~G~vG~~~A~~La~-G~~V~~~d~~~~~~~~l~~~~~~i~e~~l~~~~~~~~~~l~~t~~~~~~~~~aDvvii 79 (402)
T 1dlj_A 1 MKIAVAGSGYVGLSLGVLLSL-QNEVTIVDILPSKVDKINNGLSPIQDEYIEYYLKSKQLSIKATLDSKAAYKEAELVII 79 (402)
T ss_dssp CEEEEECCSHHHHHHHHHHTT-TSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHHHHHHCSEEEE
T ss_pred CEEEEECCCHHHHHHHHHHhC-CCEEEEEECCHHHHHHHHcCCCCcCCCCHHHHHHhccCcEEEeCCHHHHhcCCCEEEE
Confidence 479999999999999999998 9999999987532 22222232 11 256778899999999
Q ss_pred ecCCCc----------cccccccHhHhccCCCceEEEEccCCccccHHHHHHhHhcCCc
Q 007512 258 HMPLTP----------ATSKVLNDETFGKMKKGVRIINVARGGVIDEEALVRALDSGRV 306 (600)
Q Consensus 258 ~~Pl~~----------~t~~li~~~~l~~mk~gailvNvarg~ivde~aL~~aL~~g~i 306 (600)
|+|... .....+ +.... ++++.++|+.+.-++-..+.+.+.+....+
T Consensus 80 avpt~~~~~~~~~dl~~v~~v~-~~i~~-l~~~~iVV~~ST~~~g~~~~l~~~~~~~~v 136 (402)
T 1dlj_A 80 ATPTNYNSRINYFDTQHVETVI-KEVLS-VNSHATLIIKSTIPIGFITEMRQKFQTDRI 136 (402)
T ss_dssp CCCCCEETTTTEECCHHHHHHH-HHHHH-HCSSCEEEECSCCCTTHHHHHHHHTTCSCE
T ss_pred ecCCCcccCCCCccHHHHHHHH-HHHHh-hCCCCEEEEeCCCCccHHHHHHHHhCCCeE
Confidence 999552 123233 23344 889999999776665556677766655544
|
| >1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6 | Back alignment and structure |
|---|
Probab=98.18 E-value=1.9e-06 Score=89.13 Aligned_cols=90 Identities=16% Similarity=0.212 Sum_probs=67.4
Q ss_pred CEEEEEecChhHHHHHHHhhcCCCEEEEECC--CC-ChhHHHHcCC-----------ccc---CHHHHhccCCEEEEecC
Q 007512 198 KTLAVLGFGKVGSEVARRAKGLGMHVIAHDP--YA-PADRARAIGV-----------DLV---SFDEAIATADFISLHMP 260 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~--~~-~~~~a~~~g~-----------~~~---~l~ell~~aDvV~l~~P 260 (600)
++|+|||+|.||+.+|..|...|.+|.+||+ +. ..+...+.|. ... ++.+.+++||+|++|+|
T Consensus 1 m~I~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~D~vi~~v~ 80 (335)
T 1txg_A 1 MIVSILGAGAMGSALSVPLVDNGNEVRIWGTEFDTEILKSISAGREHPRLGVKLNGVEIFWPEQLEKCLENAEVVLLGVS 80 (335)
T ss_dssp CEEEEESCCHHHHHHHHHHHHHCCEEEEECCGGGHHHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHHHTTCSEEEECSC
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEEccCCHHHHHHHHHhCcCcccCccccceEEecHHhHHHHHhcCCEEEEcCC
Confidence 4799999999999999999988999999998 54 2233333342 222 56778899999999999
Q ss_pred CCccccccccHhHhccCCCceEEEEccCCc
Q 007512 261 LTPATSKVLNDETFGKMKKGVRIINVARGG 290 (600)
Q Consensus 261 l~~~t~~li~~~~l~~mk~gailvNvarg~ 290 (600)
.. .+..++. .... ++++.++|++..|-
T Consensus 81 ~~-~~~~v~~-~i~~-l~~~~~vv~~~ng~ 107 (335)
T 1txg_A 81 TD-GVLPVMS-RILP-YLKDQYIVLISKGL 107 (335)
T ss_dssp GG-GHHHHHH-HHTT-TCCSCEEEECCCSE
T ss_pred hH-HHHHHHH-HHhc-CCCCCEEEEEcCcC
Confidence 44 4554442 3445 88899999998764
|
| >2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A* | Back alignment and structure |
|---|
Probab=98.17 E-value=3e-06 Score=93.00 Aligned_cols=104 Identities=17% Similarity=0.140 Sum_probs=70.3
Q ss_pred CCEEEEEecChhHHHHHHHhhcCCCEEEEECCCCCh-hHHHHc-------C-------------Ccc-cCHHHHhccCCE
Q 007512 197 GKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPA-DRARAI-------G-------------VDL-VSFDEAIATADF 254 (600)
Q Consensus 197 gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~~-~~a~~~-------g-------------~~~-~~l~ell~~aDv 254 (600)
.++|+|||+|.||..+|..|...|++|++||++... +...+. | +.. .++++.+++||+
T Consensus 8 ~~~I~VIG~G~vG~~lA~~la~~G~~V~~~d~~~~~v~~l~~~~~~i~e~gl~~~l~~~~~~~~l~~ttd~~~a~~~aDv 87 (478)
T 2y0c_A 8 SMNLTIIGSGSVGLVTGACLADIGHDVFCLDVDQAKIDILNNGGVPIHEPGLKEVIARNRSAGRLRFSTDIEAAVAHGDV 87 (478)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEECCHHHHHHHCSE
T ss_pred CceEEEECcCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHHhcccCCEEEECCHHHHhhcCCE
Confidence 469999999999999999999999999999987532 222221 1 111 256678899999
Q ss_pred EEEecCCC---------ccccccccHhHhccCCCceEEEEccCCccccHHHHHHhH
Q 007512 255 ISLHMPLT---------PATSKVLNDETFGKMKKGVRIINVARGGVIDEEALVRAL 301 (600)
Q Consensus 255 V~l~~Pl~---------~~t~~li~~~~l~~mk~gailvNvarg~ivde~aL~~aL 301 (600)
|++|+|.. ...+..+ +.....+++++++|+.+...+=..+.+.+.+
T Consensus 88 viiaVptp~~~~~~~dl~~v~~v~-~~i~~~l~~~~iVV~~STv~~gt~~~l~~~l 142 (478)
T 2y0c_A 88 QFIAVGTPPDEDGSADLQYVLAAA-RNIGRYMTGFKVIVDKSTVPVGTAERVRAAV 142 (478)
T ss_dssp EEECCCCCBCTTSSBCCHHHHHHH-HHHHHHCCSCEEEEECSCCCTTHHHHHHHHH
T ss_pred EEEEeCCCcccCCCccHHHHHHHH-HHHHHhcCCCCEEEEeCCcCCCchHHHHHHH
Confidence 99999942 1222222 2344568999999999743232334444433
|
| >2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=98.16 E-value=2e-06 Score=87.80 Aligned_cols=107 Identities=16% Similarity=0.166 Sum_probs=74.3
Q ss_pred CEEEEEecChhHHHHHHHhhcCCCEEEEECCCC-ChhHHHHcCCcc-------------cCHHHHhc---cCCEEEEecC
Q 007512 198 KTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYA-PADRARAIGVDL-------------VSFDEAIA---TADFISLHMP 260 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~-~~~~a~~~g~~~-------------~~l~ell~---~aDvV~l~~P 260 (600)
++|+|||+|.||+.+|..|...|.+|.+||++. ..+...+.|+.. .+.+++.+ ++|+|++|+|
T Consensus 4 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~v~ 83 (316)
T 2ew2_A 4 MKIAIAGAGAMGSRLGIMLHQGGNDVTLIDQWPAHIEAIRKNGLIADFNGEEVVANLPIFSPEEIDHQNEQVDLIIALTK 83 (316)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHCEEEEETTEEEEECCCEECGGGCCTTSCCCSEEEECSC
T ss_pred CeEEEECcCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhCCEEEEeCCCeeEecceeecchhhcccCCCCCEEEEEec
Confidence 589999999999999999998899999999875 233333445321 23345444 8999999999
Q ss_pred CCccccccccHhHhccCCCceEEEEccCCccccHHHHHHhHhcCCce
Q 007512 261 LTPATSKVLNDETFGKMKKGVRIINVARGGVIDEEALVRALDSGRVA 307 (600)
Q Consensus 261 l~~~t~~li~~~~l~~mk~gailvNvarg~ivde~aL~~aL~~g~i~ 307 (600)
. ..+..++ +.....++++.++|++..|-- ..+.+.+.+...++.
T Consensus 84 ~-~~~~~v~-~~l~~~l~~~~~iv~~~~g~~-~~~~l~~~~~~~~vi 127 (316)
T 2ew2_A 84 A-QQLDAMF-KAIQPMITEKTYVLCLLNGLG-HEDVLEKYVPKENIL 127 (316)
T ss_dssp H-HHHHHHH-HHHGGGCCTTCEEEECCSSSC-THHHHTTTSCGGGEE
T ss_pred c-ccHHHHH-HHHHHhcCCCCEEEEecCCCC-cHHHHHHHcCCccEE
Confidence 3 4455444 234456889999999986532 345565556554443
|
| >3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=98.14 E-value=2.7e-06 Score=89.84 Aligned_cols=95 Identities=20% Similarity=0.187 Sum_probs=71.3
Q ss_pred cCCEEEEEecChhHHHHHHHhhcCCCEEEEECCCCC-hhHHHHcCC--------------cc-cCHHHHhccCCEEEEec
Q 007512 196 VGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAP-ADRARAIGV--------------DL-VSFDEAIATADFISLHM 259 (600)
Q Consensus 196 ~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~-~~~a~~~g~--------------~~-~~l~ell~~aDvV~l~~ 259 (600)
..++|+|||.|.+|..+|..|...|.+|..||++.. .+...+.+. .. .++++.++.||+|++++
T Consensus 28 ~~mkI~VIGaG~mG~alA~~La~~G~~V~l~~r~~~~~~~i~~~~~~~~~l~g~~l~~~i~~t~d~~ea~~~aDvVilaV 107 (356)
T 3k96_A 28 FKHPIAILGAGSWGTALALVLARKGQKVRLWSYESDHVDEMQAEGVNNRYLPNYPFPETLKAYCDLKASLEGVTDILIVV 107 (356)
T ss_dssp CCSCEEEECCSHHHHHHHHHHHTTTCCEEEECSCHHHHHHHHHHSSBTTTBTTCCCCTTEEEESCHHHHHTTCCEEEECC
T ss_pred cCCeEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCCcccCCCCccCCCeEEECCHHHHHhcCCEEEECC
Confidence 346899999999999999999999999999998752 233333331 11 37888999999999999
Q ss_pred CCCccccccccHhHhccCCCceEEEEccCCccc
Q 007512 260 PLTPATSKVLNDETFGKMKKGVRIINVARGGVI 292 (600)
Q Consensus 260 Pl~~~t~~li~~~~l~~mk~gailvNvarg~iv 292 (600)
|. ...+.++ ++....+++++++|++..|-..
T Consensus 108 p~-~~~~~vl-~~i~~~l~~~~ivvs~~kGi~~ 138 (356)
T 3k96_A 108 PS-FAFHEVI-TRMKPLIDAKTRIAWGTKGLAK 138 (356)
T ss_dssp CH-HHHHHHH-HHHGGGCCTTCEEEECCCSCBT
T ss_pred CH-HHHHHHH-HHHHHhcCCCCEEEEEeCCCCc
Confidence 94 3444444 3445568899999999876544
|
| >4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=98.13 E-value=2.2e-06 Score=84.06 Aligned_cols=107 Identities=16% Similarity=0.254 Sum_probs=72.6
Q ss_pred CCEEEEEecChhHHHHHHHhhcCCCEEEE-ECCCCC-hhH-HHHcCCcc-cCHHHHhccCCEEEEecCCCccccccccHh
Q 007512 197 GKTLAVLGFGKVGSEVARRAKGLGMHVIA-HDPYAP-ADR-ARAIGVDL-VSFDEAIATADFISLHMPLTPATSKVLNDE 272 (600)
Q Consensus 197 gktiGIIGlG~IG~~vA~~l~~~g~~V~~-~d~~~~-~~~-a~~~g~~~-~~l~ell~~aDvV~l~~Pl~~~t~~li~~~ 272 (600)
-++|+|||+|.||+.+|+.|...|++|.+ ||++.. .+. +.+.|+.. .+..+.+++||+|++++|. .....++..
T Consensus 23 mmkI~IIG~G~mG~~la~~l~~~g~~V~~v~~r~~~~~~~l~~~~g~~~~~~~~~~~~~aDvVilavp~-~~~~~v~~~- 100 (220)
T 4huj_A 23 MTTYAIIGAGAIGSALAERFTAAQIPAIIANSRGPASLSSVTDRFGASVKAVELKDALQADVVILAVPY-DSIADIVTQ- 100 (220)
T ss_dssp SCCEEEEECHHHHHHHHHHHHHTTCCEEEECTTCGGGGHHHHHHHTTTEEECCHHHHTTSSEEEEESCG-GGHHHHHTT-
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCCHHHHHHHHHHhCCCcccChHHHHhcCCEEEEeCCh-HHHHHHHHH-
Confidence 36899999999999999999988999998 998763 222 34456543 3556678999999999993 223333321
Q ss_pred HhccCCCceEEEEccCCcc------------ccHHHHHHhHhcCCce
Q 007512 273 TFGKMKKGVRIINVARGGV------------IDEEALVRALDSGRVA 307 (600)
Q Consensus 273 ~l~~mk~gailvNvarg~i------------vde~aL~~aL~~g~i~ 307 (600)
+.. .++.++|+++.|-- ...+.+.+.+...++.
T Consensus 101 -l~~-~~~~ivi~~~~g~~~~~~~~~~~~~~~~~~~l~~~l~~~~vv 145 (220)
T 4huj_A 101 -VSD-WGGQIVVDASNAIDFPAFKPRDLGGRLSTEIVSELVPGAKVV 145 (220)
T ss_dssp -CSC-CTTCEEEECCCCBCTTTCCBCCCTTCCHHHHHHHHSTTCEEE
T ss_pred -hhc-cCCCEEEEcCCCCCcccccccccCCCcHHHHHHHHCCCCCEE
Confidence 222 35789999986531 1355566666544443
|
| >3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A* | Back alignment and structure |
|---|
Probab=98.12 E-value=1.7e-05 Score=82.41 Aligned_cols=175 Identities=14% Similarity=0.082 Sum_probs=107.4
Q ss_pred CCEEEEEecChhHHHHHHHhhcCCCEEEEECCCCCh-hHH-----------HHcCC--------------c-ccCHHHHh
Q 007512 197 GKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPA-DRA-----------RAIGV--------------D-LVSFDEAI 249 (600)
Q Consensus 197 gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~~-~~a-----------~~~g~--------------~-~~~l~ell 249 (600)
-++|+|||.|.||+.+|..+...|++|..||+.... +.+ .+.|. . ..++++.+
T Consensus 6 ~~~VaViGaG~MG~giA~~~a~~G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~l~~i~~~~~l~~a~ 85 (319)
T 3ado_A 6 AGDVLIVGSGLVGRSWAMLFASGGFRVKLYDIEPRQITGALENIRKEMKSLQQSGSLKGSLSAEEQLSLISSCTNLAEAV 85 (319)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHTTCCCSSSCHHHHHHTEEEECCHHHHT
T ss_pred CCeEEEECCcHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCCccCHHHHHhhcccccchHhHh
Confidence 468999999999999999999999999999987521 111 11111 1 23688899
Q ss_pred ccCCEEEEecCCCccccccccHhHhccCCCceEEEEccCCccccHHHHHHhHhc-CCceEEEEeccCCCCCCCCCccccC
Q 007512 250 ATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVIDEEALVRALDS-GRVAQAALDVFTEEPPPADSKLVQH 328 (600)
Q Consensus 250 ~~aDvV~l~~Pl~~~t~~li~~~~l~~mk~gailvNvarg~ivde~aL~~aL~~-g~i~ga~lDv~~~EP~~~~~~L~~~ 328 (600)
+.||+|+=++|-.-+.+.-+-++.=+.++++++|-...++= ....+...+.. .++ .+++-|.+-|. -||.|
T Consensus 86 ~~ad~ViEav~E~l~iK~~lf~~l~~~~~~~aIlaSNTSsl--~is~ia~~~~~p~r~--ig~HffNP~~~---m~LVE- 157 (319)
T 3ado_A 86 EGVVHIQECVPENLDLKRKIFAQLDSIVDDRVVLSSSSSCL--LPSKLFTGLAHVKQC--IVAHPVNPPYY---IPLVE- 157 (319)
T ss_dssp TTEEEEEECCCSCHHHHHHHHHHHHTTCCSSSEEEECCSSC--CHHHHHTTCTTGGGE--EEEEECSSTTT---CCEEE-
T ss_pred ccCcEEeeccccHHHHHHHHHHHHHHHhhhcceeehhhhhc--cchhhhhhccCCCcE--EEecCCCCccc---cchHH-
Confidence 99999999999877766655555555689999886554443 34555555543 344 56666654433 46765
Q ss_pred CcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCccccCCCCChhhhhccc-chHHHHHHH
Q 007512 329 ERVTVTPHLGASTMEAQEGVAIEIAEAVVGALKGELAATAVNAPMVPAEVLTELK-PFVELAEKL 392 (600)
Q Consensus 329 ~nvilTPH~~~~t~ea~~~~~~~~~~~l~~~l~g~~~~~~vn~~~i~~~~~~~~~-p~~~la~~l 392 (600)
+|-+|+. +.+ +++.+.++.+...-..++.....+--+.+.+. ||+..|-+|
T Consensus 158 --iv~g~~T---s~~--------~~~~~~~~~~~~gk~pv~v~kd~pGFi~NRl~~~~~~EA~~l 209 (319)
T 3ado_A 158 --LVPHPET---SPA--------TVDRTHALMRKIGQSPVRVLKEIDGFVLNRLQYAIISEAWRL 209 (319)
T ss_dssp --EEECTTC---CHH--------HHHHHHHHHHHTTCEEEECSSCCTTTTHHHHHHHHHHHHHHH
T ss_pred --hcCCCCC---cHH--------HHHHHHHHHHHhCCccCCcCCCCCCEeHHHHHHHHHHHHHHH
Confidence 5555543 222 33444444443332222222223334455544 666666555
|
| >3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A* | Back alignment and structure |
|---|
Probab=98.10 E-value=7.9e-06 Score=88.33 Aligned_cols=106 Identities=20% Similarity=0.213 Sum_probs=72.1
Q ss_pred ccCCEEEEEecChhHHHHHHHhhcCCCEEEEECCCCChhHHHHcCCcc---cCHHHH---------------hccCCEEE
Q 007512 195 LVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPADRARAIGVDL---VSFDEA---------------IATADFIS 256 (600)
Q Consensus 195 l~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~~~~a~~~g~~~---~~l~el---------------l~~aDvV~ 256 (600)
-+|.++.|||+|.+|..+|..|...|++|++||.+...-.....|... ..++++ +++||+|+
T Consensus 9 ~~~~~~~ViGlGyvGlp~A~~La~~G~~V~~~D~~~~kv~~L~~g~~pi~epgl~~ll~~~~~~g~l~~ttd~~~aDvvi 88 (431)
T 3ojo_A 9 HHGSKLTVVGLGYIGLPTSIMFAKHGVDVLGVDINQQTIDKLQNGQISIEEPGLQEVYEEVLSSGKLKVSTTPEASDVFI 88 (431)
T ss_dssp ---CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESSCCCCSEEE
T ss_pred ccCCccEEEeeCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHhhcccCceEEeCchhhCCEEE
Confidence 458899999999999999999999999999999886433333333211 133333 45799999
Q ss_pred EecCCCcccc--------ccc--cHhHhccCCCceEEEEccCCccccHHHHHHh
Q 007512 257 LHMPLTPATS--------KVL--NDETFGKMKKGVRIINVARGGVIDEEALVRA 300 (600)
Q Consensus 257 l~~Pl~~~t~--------~li--~~~~l~~mk~gailvNvarg~ivde~aL~~a 300 (600)
+|+|...... .+. -+.....|++|.++|+.+.-.+-..+.+.+.
T Consensus 89 i~VpTp~~~~~~~~~Dl~~V~~~~~~i~~~l~~g~iVV~~STV~pgtt~~v~~~ 142 (431)
T 3ojo_A 89 IAVPTPNNDDQYRSCDISLVMRALDSILPFLKKGNTIIVESTIAPKTMDDFVKP 142 (431)
T ss_dssp ECCCCCBCSSSSCBBCCHHHHHHHHHHGGGCCTTEEEEECSCCCTTHHHHTHHH
T ss_pred EEeCCCccccccCCccHHHHHHHHHHHHHhCCCCCEEEEecCCChhHHHHHHHH
Confidence 9999443211 122 2345667999999999987666555655544
|
| >1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A* | Back alignment and structure |
|---|
Probab=98.10 E-value=7.3e-06 Score=94.20 Aligned_cols=114 Identities=17% Similarity=0.242 Sum_probs=76.8
Q ss_pred CCEEEEEecChhHHHHHHHhhcCCCEEEEECCCCC-hhHH-----------HHcCC-------------cc-cCHHHHhc
Q 007512 197 GKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAP-ADRA-----------RAIGV-------------DL-VSFDEAIA 250 (600)
Q Consensus 197 gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~-~~~a-----------~~~g~-------------~~-~~l~ell~ 250 (600)
=++|||||+|.||..+|..+...|++|++||++.. .+.+ .+.|. .. .++ +.++
T Consensus 314 i~kV~VIGaG~MG~~iA~~la~aG~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~d~-~~~~ 392 (715)
T 1wdk_A 314 VKQAAVLGAGIMGGGIAYQSASKGTPILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPTLSY-GDFG 392 (715)
T ss_dssp CSSEEEECCHHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEEESSS-TTGG
T ss_pred CCEEEEECCChhhHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcCeEEECCH-HHHC
Confidence 35799999999999999999989999999998752 2221 11231 11 245 6789
Q ss_pred cCCEEEEecCCCccccccccHhHhccCCCceEEEEccCCccccHHHHHHhHhc-CCceEEEEeccC
Q 007512 251 TADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVIDEEALVRALDS-GRVAQAALDVFT 315 (600)
Q Consensus 251 ~aDvV~l~~Pl~~~t~~li~~~~l~~mk~gailvNvarg~ivde~aL~~aL~~-g~i~ga~lDv~~ 315 (600)
+||+|+.++|...+.+.-+-.+....++++++|++.+++- ....+.+.+.. .++ .+.+.|.
T Consensus 393 ~aDlVIeaV~e~~~vk~~v~~~l~~~~~~~~IlasntStl--~i~~la~~~~~~~~~--ig~hf~~ 454 (715)
T 1wdk_A 393 NVDLVVEAVVENPKVKQAVLAEVENHVREDAILASNTSTI--SISLLAKALKRPENF--VGMHFFN 454 (715)
T ss_dssp GCSEEEECCCSCHHHHHHHHHHHHTTSCTTCEEEECCSSS--CHHHHGGGCSCGGGE--EEEECCS
T ss_pred CCCEEEEcCCCCHHHHHHHHHHHHhhCCCCeEEEeCCCCC--CHHHHHHHhcCccce--EEEEccC
Confidence 9999999999776554434344556789999997554443 23345544432 133 5666665
|
| >1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A* | Back alignment and structure |
|---|
Probab=98.08 E-value=3.9e-06 Score=87.75 Aligned_cols=92 Identities=22% Similarity=0.233 Sum_probs=67.7
Q ss_pred CEEEEEecChhHHHHHHHhhcCC-------CEEEEECCCCC-----hh-HHHHc--------C------Ccc-cCHHHHh
Q 007512 198 KTLAVLGFGKVGSEVARRAKGLG-------MHVIAHDPYAP-----AD-RARAI--------G------VDL-VSFDEAI 249 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~g-------~~V~~~d~~~~-----~~-~a~~~--------g------~~~-~~l~ell 249 (600)
++|+|||+|.||..+|..|...| .+|.+||++.. .. ...+. + +.. .++++++
T Consensus 9 mkI~iIG~G~mG~~~a~~l~~~g~~~~~~~~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (354)
T 1x0v_A 9 KKVCIVGSGNWGSAIAKIVGGNAAQLAQFDPRVTMWVFEEDIGGKKLTEIINTQHENVKYLPGHKLPPNVVAVPDVVQAA 88 (354)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHHHCTTEEEEEEEECCCCBSSSSBHHHHHHHHSCCTTTSTTCCCCTTEEEESSHHHHH
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEcChhhhhhHHHHHHHhcCcccccCCcccCccCeEEEcCHHHHH
Confidence 58999999999999999998777 89999998764 22 22211 1 122 3678889
Q ss_pred ccCCEEEEecCCCccccccccHhHhccCCCceEEEEccCCcc
Q 007512 250 ATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGV 291 (600)
Q Consensus 250 ~~aDvV~l~~Pl~~~t~~li~~~~l~~mk~gailvNvarg~i 291 (600)
++||+|++|+|. ..+..++ +.....+++++++|++..|-.
T Consensus 89 ~~aD~Vilav~~-~~~~~v~-~~i~~~l~~~~ivv~~~~Gi~ 128 (354)
T 1x0v_A 89 EDADILIFVVPH-QFIGKIC-DQLKGHLKANATGISLIKGVD 128 (354)
T ss_dssp TTCSEEEECCCG-GGHHHHH-HHHTTCSCTTCEEEECCCCBC
T ss_pred cCCCEEEEeCCH-HHHHHHH-HHHHhhCCCCCEEEEECCccC
Confidence 999999999994 4444444 234455789999999987643
|
| >2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.07 E-value=5.1e-06 Score=91.18 Aligned_cols=105 Identities=15% Similarity=0.087 Sum_probs=72.1
Q ss_pred CEEEEEecChhHHHHHHHhhcC--CCEEEEECCCCChhHHHHc--------------------CCcc-cCHHHHhccCCE
Q 007512 198 KTLAVLGFGKVGSEVARRAKGL--GMHVIAHDPYAPADRARAI--------------------GVDL-VSFDEAIATADF 254 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~--g~~V~~~d~~~~~~~a~~~--------------------g~~~-~~l~ell~~aDv 254 (600)
++|+|||+|.+|..+|..|... |++|++||++......... ++.. .++.+.+++||+
T Consensus 10 mkI~VIG~G~vG~~~A~~La~~g~g~~V~~~D~~~~~v~~l~~g~~~i~e~gl~~~~~~~~~~~l~~t~~~~~~~~~aDv 89 (481)
T 2o3j_A 10 SKVVCVGAGYVGGPTCAMIAHKCPHITVTVVDMNTAKIAEWNSDKLPIYEPGLDEIVFAARGRNLFFSSDIPKAIAEADL 89 (481)
T ss_dssp CEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCHHHHHHHTSSSCSSCCTTHHHHHHHHBTTTEEEESCHHHHHHHCSE
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHHhhcCCEEEECCHHHHhhcCCE
Confidence 5899999999999999999865 7999999986522111111 1121 256788899999
Q ss_pred EEEecCCCcc--------------ccccccHhHhccCCCceEEEEccCCccccHHHHHHhHhc
Q 007512 255 ISLHMPLTPA--------------TSKVLNDETFGKMKKGVRIINVARGGVIDEEALVRALDS 303 (600)
Q Consensus 255 V~l~~Pl~~~--------------t~~li~~~~l~~mk~gailvNvarg~ivde~aL~~aL~~ 303 (600)
|++|+|.... ....+ +.....+++|.+||+++.-.+-..+.+.+.+.+
T Consensus 90 vii~Vptp~~~~g~~~~~~~dl~~v~~~~-~~i~~~l~~g~iVV~~STv~~gt~~~l~~~l~~ 151 (481)
T 2o3j_A 90 IFISVNTPTKMYGRGKGMAPDLKYVESVS-RTIAQYAGGPKIVVEKSTVPVKAAESIGCILRE 151 (481)
T ss_dssp EEECCCCCBCCSSTTTTTSBCCHHHHHHH-HHHHHHCCSCEEEEECSCCCTTHHHHHHHHHHH
T ss_pred EEEecCCccccccccccCCCcHHHHHHHH-HHHHHhCCCCCEEEECCCCCCCHHHHHHHHHHH
Confidence 9999984331 11111 234556899999999886554445556666665
|
| >2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.04 E-value=1.8e-05 Score=91.10 Aligned_cols=113 Identities=13% Similarity=0.107 Sum_probs=74.9
Q ss_pred CEEEEEecChhHHHHHHHhhcCCCEEEEECCCCC-hhHHHH-----------cCC-------------cc-cCHHHHhcc
Q 007512 198 KTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAP-ADRARA-----------IGV-------------DL-VSFDEAIAT 251 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~-~~~a~~-----------~g~-------------~~-~~l~ell~~ 251 (600)
++|||||+|.||..+|..+...|++|++||++.. .+.+.+ .|. .. .++ +.+++
T Consensus 313 ~kV~VIGaG~MG~~iA~~la~aG~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~d~-~~~~~ 391 (725)
T 2wtb_A 313 KKVAIIGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVKANLQSRVRKGSMSQEKFEKTMSLLKGSLDY-ESFRD 391 (725)
T ss_dssp CCEEEECCSHHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHHHHHTTC----CTTHHHHTTTSEEEESSS-GGGTT
T ss_pred cEEEEEcCCHhhHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcceEEeCCH-HHHCC
Confidence 5799999999999999999999999999998752 222211 121 11 245 57899
Q ss_pred CCEEEEecCCCccccccccHhHhccCCCceEEEEccCCccccHHHHHHhHhc-CCceEEEEeccC
Q 007512 252 ADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVIDEEALVRALDS-GRVAQAALDVFT 315 (600)
Q Consensus 252 aDvV~l~~Pl~~~t~~li~~~~l~~mk~gailvNvarg~ivde~aL~~aL~~-g~i~ga~lDv~~ 315 (600)
||+|+.++|...+.+.-+-.+....++++++|++..++-. ...+.+.+.. .++ .+.+.|.
T Consensus 392 aDlVIeaVpe~~~vk~~v~~~l~~~~~~~~IlasntStl~--i~~la~~~~~p~~~--iG~hf~~ 452 (725)
T 2wtb_A 392 VDMVIEAVIENISLKQQIFADLEKYCPQHCILASNTSTID--LNKIGERTKSQDRI--VGAHFFS 452 (725)
T ss_dssp CSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSSSC--HHHHTTTCSCTTTE--EEEEECS
T ss_pred CCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEeCCCCCC--HHHHHHHhcCCCCE--EEecCCC
Confidence 9999999997655444333445566899999865444332 3345444432 234 5666665
|
| >1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A* | Back alignment and structure |
|---|
Probab=98.03 E-value=1.3e-06 Score=92.05 Aligned_cols=91 Identities=14% Similarity=0.166 Sum_probs=67.3
Q ss_pred EEEEEecChhHHHHHHHhhcCCCEEEEECCCC-ChhHHHHcC--------------Ccc-cCHHHHhccCCEEEEecCCC
Q 007512 199 TLAVLGFGKVGSEVARRAKGLGMHVIAHDPYA-PADRARAIG--------------VDL-VSFDEAIATADFISLHMPLT 262 (600)
Q Consensus 199 tiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~-~~~~a~~~g--------------~~~-~~l~ell~~aDvV~l~~Pl~ 262 (600)
+|+|||+|.||..+|..|...|++|.+||+.. ..+...+.+ +.. .++++++++||+|++|+|.
T Consensus 17 kI~iIG~G~mG~~la~~L~~~G~~V~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aDvVilav~~- 95 (366)
T 1evy_A 17 KAVVFGSGAFGTALAMVLSKKCREVCVWHMNEEEVRLVNEKRENVLFLKGVQLASNITFTSDVEKAYNGAEIILFVIPT- 95 (366)
T ss_dssp EEEEECCSHHHHHHHHHHTTTEEEEEEECSCHHHHHHHHHHTBCTTTSTTCBCCTTEEEESCHHHHHTTCSSEEECCCH-
T ss_pred eEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCcccccccccccccceeeeCCHHHHHcCCCEEEECCCh-
Confidence 89999999999999999998899999999875 223333322 222 3678889999999999993
Q ss_pred ccccccccHh---HhccCCC-ceEEEEccCCc
Q 007512 263 PATSKVLNDE---TFGKMKK-GVRIINVARGG 290 (600)
Q Consensus 263 ~~t~~li~~~---~l~~mk~-gailvNvarg~ 290 (600)
.....++... ....+++ +.++|++..|-
T Consensus 96 ~~~~~v~~~~~~gl~~~l~~~~~ivv~~~~gi 127 (366)
T 1evy_A 96 QFLRGFFEKSGGNLIAYAKEKQVPVLVCTKGI 127 (366)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHTCCEEECCCSC
T ss_pred HHHHHHHHHhHHHHHHhcCccCCEEEEECCcC
Confidence 4455554330 3344677 89999998764
|
| >3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1} | Back alignment and structure |
|---|
Probab=98.03 E-value=7.6e-06 Score=89.61 Aligned_cols=101 Identities=17% Similarity=0.126 Sum_probs=70.6
Q ss_pred CEEEEEecChhHHHHHHHhhcC-CC-EEEEECCCCC----hhHHHHc----------------------C-CcccCHHHH
Q 007512 198 KTLAVLGFGKVGSEVARRAKGL-GM-HVIAHDPYAP----ADRARAI----------------------G-VDLVSFDEA 248 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~-g~-~V~~~d~~~~----~~~a~~~----------------------g-~~~~~l~el 248 (600)
++|+|||+|.+|..+|..|... |+ +|++||++.. .-..... | +...+-.+.
T Consensus 19 mkIaVIGlG~mG~~lA~~la~~~G~~~V~~~D~~~~~~~~kv~~l~~g~~~i~~~e~gl~~l~~~~~~~g~l~~ttd~ea 98 (478)
T 3g79_A 19 KKIGVLGMGYVGIPAAVLFADAPCFEKVLGFQRNSKSSGYKIEMLNRGESPLKGEEPGLEELIGKVVKAGKFECTPDFSR 98 (478)
T ss_dssp CEEEEECCSTTHHHHHHHHHHSTTCCEEEEECCCCTTTTTHHHHHTTTCCCSSCCGGGHHHHHHHHHHTTCEEEESCGGG
T ss_pred CEEEEECcCHHHHHHHHHHHHhCCCCeEEEEECChhHhHHHHHHHHhcCCCccccCCCHHHHHHhhcccCCeEEeCcHHH
Confidence 5899999999999999999988 99 9999998875 3222222 1 122222577
Q ss_pred hccCCEEEEecCCCc--------cccccc--cHhHhccCCCceEEEEccCCccccHHHHH
Q 007512 249 IATADFISLHMPLTP--------ATSKVL--NDETFGKMKKGVRIINVARGGVIDEEALV 298 (600)
Q Consensus 249 l~~aDvV~l~~Pl~~--------~t~~li--~~~~l~~mk~gailvNvarg~ivde~aL~ 298 (600)
+++||+|++|+|... +...+. -+.....|++|.++|+.+.-.+-..+.+.
T Consensus 99 ~~~aDvViiaVptp~~~~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~pgtt~~v~ 158 (478)
T 3g79_A 99 ISELDAVTLAIQTPFANPKDLEPDFSALIDGIRNVGKYLKPGMLVVLESTITPGTTEGMA 158 (478)
T ss_dssp GGGCSEEEECCCCCCCSSCCSSCCCHHHHHHHHHHHHHCCTTCEEEECSCCCTTTTTTHH
T ss_pred HhcCCEEEEecCCchhccCCccccHHHHHHHHHHHHhhcCCCcEEEEeCCCChHHHHHHH
Confidence 899999999999542 222222 23455669999999999865543344443
|
| >3ulk_A Ketol-acid reductoisomerase; branched-chain amino acid biosynthesis, rossmann fold, acetolactate, oxidoreductase; HET: CSX NDP; 2.30A {Escherichia coli} PDB: 1yrl_A* | Back alignment and structure |
|---|
Probab=98.00 E-value=9.4e-06 Score=86.74 Aligned_cols=93 Identities=23% Similarity=0.300 Sum_probs=75.8
Q ss_pred eccCCEEEEEecChhHHHHHHHhhcCCCEEEEECC-------CCChhHHHHcCCcccCHHHHhccCCEEEEecCCCcccc
Q 007512 194 SLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDP-------YAPADRARAIGVDLVSFDEAIATADFISLHMPLTPATS 266 (600)
Q Consensus 194 ~l~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~-------~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Pl~~~t~ 266 (600)
-|+||||+|||+|.-|.+=|..|+.-|++|++--+ ..+...|.+.|+...+..|+.++||+|.+-+|... ..
T Consensus 34 ~lkgK~IaVIGyGsQG~AqAlNLRDSGv~V~Vglr~~s~~e~~~S~~~A~~~Gf~v~~~~eA~~~ADvV~~L~PD~~-q~ 112 (491)
T 3ulk_A 34 YLQGKKVVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATENGFKVGTYEELIPQADLVINLTPDKQ-HS 112 (491)
T ss_dssp GGTTSEEEEESCSHHHHHHHHHHHHTTCEEEEEECHHHHHTTCHHHHHHHHTTCEEEEHHHHGGGCSEEEECSCGGG-HH
T ss_pred HHcCCEEEEeCCChHhHHHHhHHHhcCCcEEEEeCCCCcccccchHHHHHHCCCEecCHHHHHHhCCEEEEeCChhh-HH
Confidence 48999999999999999999999999999876422 22456788999999999999999999999999543 33
Q ss_pred ccccHhHhccCCCceEEEEccCC
Q 007512 267 KVLNDETFGKMKKGVRIINVARG 289 (600)
Q Consensus 267 ~li~~~~l~~mk~gailvNvarg 289 (600)
.+. +.....||+|+.|. .+.|
T Consensus 113 ~vy-~~I~p~lk~G~~L~-faHG 133 (491)
T 3ulk_A 113 DVV-RTVQPLMKDGAALG-YSHG 133 (491)
T ss_dssp HHH-HHHGGGSCTTCEEE-ESSC
T ss_pred HHH-HHHHhhCCCCCEEE-ecCc
Confidence 444 45788899999887 4444
|
| >4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major} | Back alignment and structure |
|---|
Probab=97.99 E-value=1.2e-05 Score=82.43 Aligned_cols=82 Identities=26% Similarity=0.328 Sum_probs=68.2
Q ss_pred cceeccCCEEEEEecCh-hHHHHHHHhhcCCCEEEEECCCCChhHHHHcCCcccCHH--HHhccCCEEEEecCCCccccc
Q 007512 191 VGVSLVGKTLAVLGFGK-VGSEVARRAKGLGMHVIAHDPYAPADRARAIGVDLVSFD--EAIATADFISLHMPLTPATSK 267 (600)
Q Consensus 191 ~g~~l~gktiGIIGlG~-IG~~vA~~l~~~g~~V~~~d~~~~~~~a~~~g~~~~~l~--ell~~aDvV~l~~Pl~~~t~~ 267 (600)
.+.++.||++.|||.|. +|+.+|..|...|++|..++++.. +++ +.+++||+|+.++|. .+
T Consensus 159 ~~i~l~Gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~~~~T~------------~l~l~~~~~~ADIVI~Avg~----p~ 222 (300)
T 4a26_A 159 CGIEMAGKRAVVLGRSNIVGAPVAALLMKENATVTIVHSGTS------------TEDMIDYLRTADIVIAAMGQ----PG 222 (300)
T ss_dssp HTCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTSC------------HHHHHHHHHTCSEEEECSCC----TT
T ss_pred cCCCCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCCC------------CchhhhhhccCCEEEECCCC----CC
Confidence 36789999999999988 699999999999999999987532 345 889999999999994 34
Q ss_pred cccHhHhccCCCceEEEEccCCcc
Q 007512 268 VLNDETFGKMKKGVRIINVARGGV 291 (600)
Q Consensus 268 li~~~~l~~mk~gailvNvarg~i 291 (600)
++..+. +|+|+++||++.-.+
T Consensus 223 ~I~~~~---vk~GavVIDvgi~~~ 243 (300)
T 4a26_A 223 YVKGEW---IKEGAAVVDVGTTPV 243 (300)
T ss_dssp CBCGGG---SCTTCEEEECCCEEE
T ss_pred CCcHHh---cCCCcEEEEEeccCC
Confidence 566654 599999999986544
|
| >4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1} | Back alignment and structure |
|---|
Probab=97.99 E-value=1.5e-05 Score=81.18 Aligned_cols=82 Identities=21% Similarity=0.307 Sum_probs=68.7
Q ss_pred cceeccCCEEEEEecCh-hHHHHHHHhhcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEecCCCccccccc
Q 007512 191 VGVSLVGKTLAVLGFGK-VGSEVARRAKGLGMHVIAHDPYAPADRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVL 269 (600)
Q Consensus 191 ~g~~l~gktiGIIGlG~-IG~~vA~~l~~~g~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Pl~~~t~~li 269 (600)
.+.++.||++.|||.|. +|+.+|..|...|++|..++.+. .++++.+++||+|+.++|. .+++
T Consensus 155 ~~i~l~Gk~vvVvGrs~iVG~plA~lL~~~gAtVtv~hs~T------------~~L~~~~~~ADIVI~Avg~----p~~I 218 (286)
T 4a5o_A 155 TGADLYGMDAVVVGASNIVGRPMALELLLGGCTVTVTHRFT------------RDLADHVSRADLVVVAAGK----PGLV 218 (286)
T ss_dssp TTCCCTTCEEEEECTTSTTHHHHHHHHHHTTCEEEEECTTC------------SCHHHHHHTCSEEEECCCC----TTCB
T ss_pred hCCCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCC------------cCHHHHhccCCEEEECCCC----CCCC
Confidence 46789999999999987 79999999999999999987643 2588999999999999983 3457
Q ss_pred cHhHhccCCCceEEEEccCCcc
Q 007512 270 NDETFGKMKKGVRIINVARGGV 291 (600)
Q Consensus 270 ~~~~l~~mk~gailvNvarg~i 291 (600)
..++ +|||+++||++.-.+
T Consensus 219 ~~~~---vk~GavVIDvgi~~~ 237 (286)
T 4a5o_A 219 KGEW---IKEGAIVIDVGINRQ 237 (286)
T ss_dssp CGGG---SCTTCEEEECCSCSS
T ss_pred CHHH---cCCCeEEEEeccccc
Confidence 6655 499999999996543
|
| >1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=97.99 E-value=5.1e-06 Score=87.98 Aligned_cols=90 Identities=16% Similarity=0.162 Sum_probs=66.4
Q ss_pred CEEEEEecChhHHHHHHHhhcCC-------CEEEEECCCCC-----hh-HHHHc--------------CCcc-cCHHHHh
Q 007512 198 KTLAVLGFGKVGSEVARRAKGLG-------MHVIAHDPYAP-----AD-RARAI--------------GVDL-VSFDEAI 249 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~g-------~~V~~~d~~~~-----~~-~a~~~--------------g~~~-~~l~ell 249 (600)
++|+|||.|.||..+|..|...| .+|.+||+... .. ...+. ++.. .++++++
T Consensus 22 ~kI~iIGaG~mG~alA~~L~~~G~~~~~~~~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~ea~ 101 (375)
T 1yj8_A 22 LKISILGSGNWASAISKVVGTNAKNNYLFENEVRMWIRDEFVNGERMVDIINNKHENTKYLKGVPLPHNIVAHSDLASVI 101 (375)
T ss_dssp BCEEEECCSHHHHHHHHHHHHHHHHCTTBCSCEEEECCSCC---CCHHHHHHHHCBCTTTSTTCBCCTTEEEESSTHHHH
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCccCCCCCeEEEEECChhhhhHHHHHHHHhcCcccccCCcccCcCCeEEECCHHHHH
Confidence 47999999999999999998767 89999998765 22 22221 1222 2577889
Q ss_pred ccCCEEEEecCCCccccccccHhHhc----cCCCceEEEEccCC
Q 007512 250 ATADFISLHMPLTPATSKVLNDETFG----KMKKGVRIINVARG 289 (600)
Q Consensus 250 ~~aDvV~l~~Pl~~~t~~li~~~~l~----~mk~gailvNvarg 289 (600)
++||+|++++| ......++. .... .+++++++|++..|
T Consensus 102 ~~aDvVilav~-~~~~~~vl~-~i~~~~~~~l~~~~ivvs~~~G 143 (375)
T 1yj8_A 102 NDADLLIFIVP-CQYLESVLA-SIKESESIKIASHAKAISLTKG 143 (375)
T ss_dssp TTCSEEEECCC-HHHHHHHHH-HHTC---CCCCTTCEEEECCCS
T ss_pred cCCCEEEEcCC-HHHHHHHHH-HHhhhhhccCCCCCEEEEeCCc
Confidence 99999999999 344554443 2334 57889999999876
|
| >3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis} | Back alignment and structure |
|---|
Probab=97.99 E-value=1.8e-05 Score=80.65 Aligned_cols=81 Identities=17% Similarity=0.295 Sum_probs=68.1
Q ss_pred cceeccCCEEEEEecCh-hHHHHHHHhhcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEecCCCccccccc
Q 007512 191 VGVSLVGKTLAVLGFGK-VGSEVARRAKGLGMHVIAHDPYAPADRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVL 269 (600)
Q Consensus 191 ~g~~l~gktiGIIGlG~-IG~~vA~~l~~~g~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Pl~~~t~~li 269 (600)
.+.++.||++.|||.|. +|+.+|..|...|++|..++++. .++++.+++||+|+.++|. .+++
T Consensus 155 ~~i~l~Gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t------------~~L~~~~~~ADIVI~Avg~----p~~I 218 (285)
T 3l07_A 155 YGIKTEGAYAVVVGASNVVGKPVSQLLLNAKATVTTCHRFT------------TDLKSHTTKADILIVAVGK----PNFI 218 (285)
T ss_dssp TTCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC------------SSHHHHHTTCSEEEECCCC----TTCB
T ss_pred hCCCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCc------------hhHHHhcccCCEEEECCCC----CCCC
Confidence 46789999999999998 69999999999999999987642 2588999999999999983 3456
Q ss_pred cHhHhccCCCceEEEEccCCc
Q 007512 270 NDETFGKMKKGVRIINVARGG 290 (600)
Q Consensus 270 ~~~~l~~mk~gailvNvarg~ 290 (600)
..++ +|||+++||+|.-.
T Consensus 219 ~~~~---vk~GavVIDvgi~~ 236 (285)
T 3l07_A 219 TADM---VKEGAVVIDVGINH 236 (285)
T ss_dssp CGGG---SCTTCEEEECCCEE
T ss_pred CHHH---cCCCcEEEEecccC
Confidence 6654 59999999998654
|
| >1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A* | Back alignment and structure |
|---|
Probab=97.98 E-value=5.1e-06 Score=83.84 Aligned_cols=90 Identities=16% Similarity=0.172 Sum_probs=64.7
Q ss_pred CEEEEEecChhHHHHHHHhhcCCCEEEEECCCCCh-hHHHHc---CC----c-ccCHHHHhccCCEEEEecCCCcccccc
Q 007512 198 KTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPA-DRARAI---GV----D-LVSFDEAIATADFISLHMPLTPATSKV 268 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~~-~~a~~~---g~----~-~~~l~ell~~aDvV~l~~Pl~~~t~~l 268 (600)
++|+|||+|.||+.+|..|...|.+|.+||+.... +..... |. . ..+..+.++.+|+|++|+|.. .+..+
T Consensus 1 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~v~~~-~~~~v 79 (291)
T 1ks9_A 1 MKITVLGCGALGQLWLTALCKQGHEVQGWLRVPQPYCSVNLVETDGSIFNESLTANDPDFLATSDLLLVTLKAW-QVSDA 79 (291)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSEEEEEEECTTSCEEEEEEEESCHHHHHTCSEEEECSCGG-GHHHH
T ss_pred CeEEEECcCHHHHHHHHHHHhCCCCEEEEEcCccceeeEEEEcCCCceeeeeeeecCccccCCCCEEEEEecHH-hHHHH
Confidence 47999999999999999999999999999987632 211111 21 0 123346778999999999954 45555
Q ss_pred ccHhHhccCCCceEEEEccCC
Q 007512 269 LNDETFGKMKKGVRIINVARG 289 (600)
Q Consensus 269 i~~~~l~~mk~gailvNvarg 289 (600)
+ +.....++++.++|++..|
T Consensus 80 ~-~~l~~~l~~~~~vv~~~~g 99 (291)
T 1ks9_A 80 V-KSLASTLPVTTPILLIHNG 99 (291)
T ss_dssp H-HHHHTTSCTTSCEEEECSS
T ss_pred H-HHHHhhCCCCCEEEEecCC
Confidence 4 3344568889999998665
|
| >2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A | Back alignment and structure |
|---|
Probab=97.98 E-value=1.9e-05 Score=80.10 Aligned_cols=184 Identities=20% Similarity=0.283 Sum_probs=117.7
Q ss_pred EccCCCHhHHhhhc------CCceEEEEcCCC--CCCHH-HHhccCCCceEEEEcCcccCccChhHHHhCCceeecCCCC
Q 007512 83 CAYNLSPEELCTKI------SLCDALIVRSGT--KVNRD-VFESSAGRLKVVGRAGVGIDNVDLAAATEFGCLVVNAPTA 153 (600)
Q Consensus 83 ~~~~~~~~el~~~i------~~~d~li~~~~~--~~~~~-~l~~~~~~Lk~I~~~g~G~d~iD~~aa~~~GI~V~n~p~~ 153 (600)
+....+++|+.+.+ .++|++++..+- +++++ +++.-.| -| -+|.+-..- .|=.+.+.+ .
T Consensus 69 lp~~~s~~ell~~i~~lN~D~~v~GIlvqlPlP~~id~~~i~~~I~p-~K-------DVDG~~p~n---~g~l~~g~~-~ 136 (281)
T 2c2x_A 69 LPADISTATLNETIDELNANPDCTGYIVQLPLPKHLDENAALERVDP-AK-------DADGLHPTN---LGRLVLGTP-A 136 (281)
T ss_dssp ECTTCCHHHHHHHHHHHHHCTTCCEEEECSCCCTTSCHHHHHHHSCG-GG-------BTTSCCHHH---HHHHHHTCC-C
T ss_pred CCCCCCHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCCHHHHHhhcCc-cC-------CccCCChhh---HHHHhCCCC-C
Confidence 34456788887766 578999998643 35543 4443322 22 234332111 111222223 2
Q ss_pred ChHHHHHHHHHHHHHHHhchHHHHHHHHcCccccccccceeccCCEEEEEecChh-HHHHHHHhhcC--CCEEEEECCCC
Q 007512 154 NTVAAAEHGIALLAAMARNVAQADASVKAGKWQRNKYVGVSLVGKTLAVLGFGKV-GSEVARRAKGL--GMHVIAHDPYA 230 (600)
Q Consensus 154 ~~~~vAE~~l~lll~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktiGIIGlG~I-G~~vA~~l~~~--g~~V~~~d~~~ 230 (600)
...++++-++-++ + ..+.++.||++.|||.|.| |+.+|+.|... |.+|..++++.
T Consensus 137 ~~PcTp~gi~~ll----~------------------~~~i~l~gk~vvVvG~s~iVG~p~A~lL~~~g~~atVtv~h~~t 194 (281)
T 2c2x_A 137 PLPCTPRGIVHLL----R------------------RYDISIAGAHVVVIGRGVTVGRPLGLLLTRRSENATVTLCHTGT 194 (281)
T ss_dssp CCCHHHHHHHHHH----H------------------HTTCCCTTCEEEEECCCTTTHHHHHHHHTSTTTCCEEEEECTTC
T ss_pred CCCChHHHHHHHH----H------------------HcCCCCCCCEEEEECCCcHHHHHHHHHHhcCCCCCEEEEEECch
Confidence 3345555544333 1 1367899999999999985 99999999988 89999997553
Q ss_pred ChhHHHHcCCcccCHHHHhccCCEEEEecCCCccccccccHhHhccCCCceEEEEccCCccccHHHHHHhHhcCCceEEE
Q 007512 231 PADRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVIDEEALVRALDSGRVAQAA 310 (600)
Q Consensus 231 ~~~~a~~~g~~~~~l~ell~~aDvV~l~~Pl~~~t~~li~~~~l~~mk~gailvNvarg~ivde~aL~~aL~~g~i~ga~ 310 (600)
.++.+.+++||+|+.+++.. +++..++ +|+|+++||+|.-.+-| | ..
T Consensus 195 ------------~~L~~~~~~ADIVI~Avg~p----~~I~~~~---vk~GavVIDVgi~r~~~----------g----lv 241 (281)
T 2c2x_A 195 ------------RDLPALTRQADIVVAAVGVA----HLLTADM---VRPGAAVIDVGVSRTDD----------G----LV 241 (281)
T ss_dssp ------------SCHHHHHTTCSEEEECSCCT----TCBCGGG---SCTTCEEEECCEEEETT----------E----EE
T ss_pred ------------hHHHHHHhhCCEEEECCCCC----cccCHHH---cCCCcEEEEccCCCCCC----------C----cc
Confidence 36889999999999999832 3577665 48999999999755432 2 33
Q ss_pred EeccCCCCCCCCCccccCCcEEEcCCCCCCcH
Q 007512 311 LDVFTEEPPPADSKLVQHERVTVTPHLGASTM 342 (600)
Q Consensus 311 lDv~~~EP~~~~~~L~~~~nvilTPH~~~~t~ 342 (600)
=||- .+ ..+...+ +||--||.-.
T Consensus 242 GDVd-~~-------v~~~a~~-iTPVPGGVGp 264 (281)
T 2c2x_A 242 GDVH-PD-------VWELAGH-VSPNPGGVGP 264 (281)
T ss_dssp ESBC-GG-------GGGTCSE-EECSSSSSHH
T ss_pred Cccc-cc-------hhhheee-ecCCCCCccH
Confidence 4664 22 2223344 7998888754
|
| >1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.96 E-value=7.7e-06 Score=85.17 Aligned_cols=86 Identities=22% Similarity=0.295 Sum_probs=64.8
Q ss_pred CCEEEEEecChhHHHHHHHhhcCCCEEEEECCCCC-hhHHHHcC-----------Ccc-cCHHHHhccCCEEEEecCCCc
Q 007512 197 GKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAP-ADRARAIG-----------VDL-VSFDEAIATADFISLHMPLTP 263 (600)
Q Consensus 197 gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~-~~~a~~~g-----------~~~-~~l~ell~~aDvV~l~~Pl~~ 263 (600)
-.+|+|||+|.||..+|.+|...|.+|.+||+... .+...+.| +.. .++++ +..||+|++++| ..
T Consensus 14 ~~kI~iIG~G~mG~ala~~L~~~G~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~-~~~aDvVil~vk-~~ 91 (335)
T 1z82_A 14 EMRFFVLGAGSWGTVFAQMLHENGEEVILWARRKEIVDLINVSHTSPYVEESKITVRATNDLEE-IKKEDILVIAIP-VQ 91 (335)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHSCBTTBTTCCCCSEEESCGGG-CCTTEEEEECSC-GG
T ss_pred CCcEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHhCCcccCCCCeeeEEEeCCHHH-hcCCCEEEEECC-HH
Confidence 45899999999999999999988999999998752 23333334 232 36778 899999999999 45
Q ss_pred cccccccHhHhccCC-CceEEEEccCC
Q 007512 264 ATSKVLNDETFGKMK-KGVRIINVARG 289 (600)
Q Consensus 264 ~t~~li~~~~l~~mk-~gailvNvarg 289 (600)
.++.++ ..++ ++.++|++..|
T Consensus 92 ~~~~v~-----~~l~~~~~~vv~~~nG 113 (335)
T 1z82_A 92 YIREHL-----LRLPVKPSMVLNLSKG 113 (335)
T ss_dssp GHHHHH-----TTCSSCCSEEEECCCC
T ss_pred HHHHHH-----HHhCcCCCEEEEEeCC
Confidence 444443 2233 78899999875
|
| >3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A | Back alignment and structure |
|---|
Probab=97.96 E-value=1.8e-05 Score=80.14 Aligned_cols=153 Identities=13% Similarity=0.147 Sum_probs=100.5
Q ss_pred EccCCCHhHHhhhc------CCceEEEEcCCC--CCCHHH-HhccCCCceEEEEcCcccCccChhHHHhCCceeecCCCC
Q 007512 83 CAYNLSPEELCTKI------SLCDALIVRSGT--KVNRDV-FESSAGRLKVVGRAGVGIDNVDLAAATEFGCLVVNAPTA 153 (600)
Q Consensus 83 ~~~~~~~~el~~~i------~~~d~li~~~~~--~~~~~~-l~~~~~~Lk~I~~~g~G~d~iD~~aa~~~GI~V~n~p~~ 153 (600)
+....+++|+.+.+ .++|++++..+- +++++. ++.-.| .--+|.+-.. ..|-.+.+.++
T Consensus 63 lp~~~s~~ell~~I~~lN~D~~v~GIlvqlPLP~~id~~~v~~~I~p--------~KDVDG~~p~---n~G~l~~g~~~- 130 (276)
T 3ngx_A 63 KYDDISMKDLLKRIDDLAKDPQINGIMIENPLPKGFDYYEIVRNIPY--------YKDVDALSPY---NQGLIALNREF- 130 (276)
T ss_dssp EESSCCHHHHHHHHHHHHHCTTCCEEEECSCCCTTCCHHHHHTTSCG--------GGBTTCCSHH---HHHHHHTTCCS-
T ss_pred CCCCCCHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCHHHHHhhCCC--------CCcccCCCcc---chhhhhcCCCC-
Confidence 34456788887766 578999998653 355443 333221 1223333211 11112222333
Q ss_pred ChHHHHHHHHHHHHHHHhchHHHHHHHHcCccccccccceeccCCEEEEEecCh-hHHHHHHHhhcCCCEEEEECCCCCh
Q 007512 154 NTVAAAEHGIALLAAMARNVAQADASVKAGKWQRNKYVGVSLVGKTLAVLGFGK-VGSEVARRAKGLGMHVIAHDPYAPA 232 (600)
Q Consensus 154 ~~~~vAE~~l~lll~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktiGIIGlG~-IG~~vA~~l~~~g~~V~~~d~~~~~ 232 (600)
...+++.-++.++ + ..+ +.||++.|||.|. +|+.+|+.|...|++|..++++.
T Consensus 131 ~~PcTp~gv~~lL----~------------------~~~--l~Gk~vvVvG~s~iVG~plA~lL~~~gAtVtv~~~~t-- 184 (276)
T 3ngx_A 131 LVPATPRAVIDIM----D------------------YYG--YHENTVTIVNRSPVVGRPLSMMLLNRNYTVSVCHSKT-- 184 (276)
T ss_dssp SCCHHHHHHHHHH----H------------------HHT--CCSCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC--
T ss_pred CCCCcHHHHHHHH----H------------------HhC--cCCCEEEEEcCChHHHHHHHHHHHHCCCeEEEEeCCc--
Confidence 3334555444332 1 123 8999999999986 79999999999999999998642
Q ss_pred hHHHHcCCcccCHHHHhccCCEEEEecCCCccccccccHhHhccCCCceEEEEccCCc
Q 007512 233 DRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGG 290 (600)
Q Consensus 233 ~~a~~~g~~~~~l~ell~~aDvV~l~~Pl~~~t~~li~~~~l~~mk~gailvNvarg~ 290 (600)
.++++.+++||+|+.++|. .+++..+. +|+|+++||+|.-.
T Consensus 185 ----------~~L~~~~~~ADIVI~Avg~----p~~I~~~~---vk~GavVIDvgi~~ 225 (276)
T 3ngx_A 185 ----------KDIGSMTRSSKIVVVAVGR----PGFLNREM---VTPGSVVIDVGINY 225 (276)
T ss_dssp ----------SCHHHHHHHSSEEEECSSC----TTCBCGGG---CCTTCEEEECCCEE
T ss_pred ----------ccHHHhhccCCEEEECCCC----CccccHhh---ccCCcEEEEeccCc
Confidence 3588999999999999984 23576655 59999999998644
|
| >1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A* | Back alignment and structure |
|---|
Probab=97.95 E-value=2.4e-05 Score=80.14 Aligned_cols=82 Identities=21% Similarity=0.301 Sum_probs=69.0
Q ss_pred cceeccCCEEEEEecCh-hHHHHHHHhhcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEecCCCccccccc
Q 007512 191 VGVSLVGKTLAVLGFGK-VGSEVARRAKGLGMHVIAHDPYAPADRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVL 269 (600)
Q Consensus 191 ~g~~l~gktiGIIGlG~-IG~~vA~~l~~~g~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Pl~~~t~~li 269 (600)
.+.++.|+++.|||.|. +|+.+|+.|...|++|..++.+. .++.+.+++||+|+.+++. .+++
T Consensus 159 ~~i~l~gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t------------~~L~~~~~~ADIVI~Avg~----p~~I 222 (301)
T 1a4i_A 159 TGVPIAGRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSKT------------AHLDEEVNKGDILVVATGQ----PEMV 222 (301)
T ss_dssp TTCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC------------SSHHHHHTTCSEEEECCCC----TTCB
T ss_pred cCCCCCCCEEEEECCCchHHHHHHHHHHhCCCeEEEEECCc------------ccHHHHhccCCEEEECCCC----cccC
Confidence 46789999999999996 69999999999999999997542 3588999999999999984 2357
Q ss_pred cHhHhccCCCceEEEEccCCcc
Q 007512 270 NDETFGKMKKGVRIINVARGGV 291 (600)
Q Consensus 270 ~~~~l~~mk~gailvNvarg~i 291 (600)
..+. +|||+++||+|.-.+
T Consensus 223 ~~~~---vk~GavVIDVgi~~~ 241 (301)
T 1a4i_A 223 KGEW---IKPGAIVIDCGINYV 241 (301)
T ss_dssp CGGG---SCTTCEEEECCCBC-
T ss_pred CHHH---cCCCcEEEEccCCCc
Confidence 7665 489999999997654
|
| >2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=97.95 E-value=1.3e-05 Score=79.29 Aligned_cols=95 Identities=16% Similarity=0.254 Sum_probs=69.2
Q ss_pred CEEEEEecChhHHHHHHHhhcCCCEE-EEECCCCChhHHHHcCCcccCHHHHh-ccCCEEEEecCCCccccccccHhHhc
Q 007512 198 KTLAVLGFGKVGSEVARRAKGLGMHV-IAHDPYAPADRARAIGVDLVSFDEAI-ATADFISLHMPLTPATSKVLNDETFG 275 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~g~~V-~~~d~~~~~~~a~~~g~~~~~l~ell-~~aDvV~l~~Pl~~~t~~li~~~~l~ 275 (600)
.+|||||+|.||+.+++.+...|+++ .+||+....+. .+.++++++ .++|+|++|+|... .. +....
T Consensus 1 m~vgiIG~G~mG~~~~~~l~~~g~~lv~v~d~~~~~~~------~~~~~~~l~~~~~DvVv~~~~~~~-~~----~~~~~ 69 (236)
T 2dc1_A 1 MLVGLIGYGAIGKFLAEWLERNGFEIAAILDVRGEHEK------MVRGIDEFLQREMDVAVEAASQQA-VK----DYAEK 69 (236)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEECSSCCCTT------EESSHHHHTTSCCSEEEECSCHHH-HH----HHHHH
T ss_pred CEEEEECCCHHHHHHHHHHhcCCCEEEEEEecCcchhh------hcCCHHHHhcCCCCEEEECCCHHH-HH----HHHHH
Confidence 37999999999999999998778997 57898742211 345799999 79999999999332 22 22234
Q ss_pred cCCCceEEEEccCCccccH---HHHHHhHhc
Q 007512 276 KMKKGVRIINVARGGVIDE---EALVRALDS 303 (600)
Q Consensus 276 ~mk~gailvNvarg~ivde---~aL~~aL~~ 303 (600)
.++.|..+++...+..-+. +.|.++.++
T Consensus 70 ~l~~G~~vv~~~~~~~~~~~~~~~l~~~a~~ 100 (236)
T 2dc1_A 70 ILKAGIDLIVLSTGAFADRDFLSRVREVCRK 100 (236)
T ss_dssp HHHTTCEEEESCGGGGGSHHHHHHHHHHHHH
T ss_pred HHHCCCcEEEECcccCChHHHHHHHHHHHHh
Confidence 5788999999987766544 456555544
|
| >2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=97.95 E-value=4e-06 Score=85.95 Aligned_cols=105 Identities=20% Similarity=0.179 Sum_probs=72.2
Q ss_pred CEEEEEecChhHHHHHHHhhcC-----C-CEEEEECCCCChhHHHH-cCCccc--------------CHHHHhccCCEEE
Q 007512 198 KTLAVLGFGKVGSEVARRAKGL-----G-MHVIAHDPYAPADRARA-IGVDLV--------------SFDEAIATADFIS 256 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~-----g-~~V~~~d~~~~~~~a~~-~g~~~~--------------~l~ell~~aDvV~ 256 (600)
++|+|||+|.||+.+|..|... | .+|.+||+....+...+ .|+... +..+.+..+|+|+
T Consensus 9 m~I~iiG~G~mG~~~a~~L~~~~~~~~g~~~V~~~~r~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi 88 (317)
T 2qyt_A 9 IKIAVFGLGGVGGYYGAMLALRAAATDGLLEVSWIARGAHLEAIRAAGGLRVVTPSRDFLARPTCVTDNPAEVGTVDYIL 88 (317)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHHHTTSSEEEEEECCHHHHHHHHHHTSEEEECSSCEEEECCSEEESCHHHHCCEEEEE
T ss_pred CEEEEECcCHHHHHHHHHHHhCccccCCCCCEEEEEcHHHHHHHHhcCCeEEEeCCCCeEEecceEecCccccCCCCEEE
Confidence 4899999999999999999877 8 99999998212333444 565322 2335678999999
Q ss_pred EecCCCccccccccHhHhccCCCceEEEEccCCccccHHHHHHhHhcCC
Q 007512 257 LHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVIDEEALVRALDSGR 305 (600)
Q Consensus 257 l~~Pl~~~t~~li~~~~l~~mk~gailvNvarg~ivde~aL~~aL~~g~ 305 (600)
+|+|... +..++ +.....++++.+||++.-| +-.++.+.+.+...+
T Consensus 89 l~vk~~~-~~~v~-~~i~~~l~~~~~iv~~~nG-~~~~~~l~~~l~~~~ 134 (317)
T 2qyt_A 89 FCTKDYD-MERGV-AEIRPMIGQNTKILPLLNG-ADIAERMRTYLPDTV 134 (317)
T ss_dssp ECCSSSC-HHHHH-HHHGGGEEEEEEEEECSCS-SSHHHHHTTTSCTTT
T ss_pred EecCccc-HHHHH-HHHHhhcCCCCEEEEccCC-CCcHHHHHHHCCCCc
Confidence 9999543 44444 2333456788999998766 222455666565443
|
| >1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8 | Back alignment and structure |
|---|
Probab=97.91 E-value=1e-05 Score=73.95 Aligned_cols=101 Identities=18% Similarity=0.196 Sum_probs=74.0
Q ss_pred ccCCEEEEEec----ChhHHHHHHHhhcCCCEEEEECCCCChhHHHHcCCccc-CHHHHhccCCEEEEecCCCccccccc
Q 007512 195 LVGKTLAVLGF----GKVGSEVARRAKGLGMHVIAHDPYAPADRARAIGVDLV-SFDEAIATADFISLHMPLTPATSKVL 269 (600)
Q Consensus 195 l~gktiGIIGl----G~IG~~vA~~l~~~g~~V~~~d~~~~~~~a~~~g~~~~-~l~ell~~aDvV~l~~Pl~~~t~~li 269 (600)
+.-++|+|||+ |++|..+++.++..|++|+.+||.... -.|+... +++++...+|++++++| .+....++
T Consensus 12 ~~p~~IavIGaS~~~g~~G~~~~~~L~~~G~~V~~vnp~~~~----i~G~~~~~s~~el~~~vDlvii~vp-~~~v~~v~ 86 (138)
T 1y81_A 12 KEFRKIALVGASKNPAKYGNIILKDLLSKGFEVLPVNPNYDE----IEGLKCYRSVRELPKDVDVIVFVVP-PKVGLQVA 86 (138)
T ss_dssp --CCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSE----ETTEECBSSGGGSCTTCCEEEECSC-HHHHHHHH
T ss_pred cCCCeEEEEeecCCCCCHHHHHHHHHHHCCCEEEEeCCCCCe----ECCeeecCCHHHhCCCCCEEEEEeC-HHHHHHHH
Confidence 45678999999 999999999999999999999987521 1466544 79999999999999999 56666666
Q ss_pred cHhHhccCCCceEEEEccCCccccHHHHHHhHhcCCc
Q 007512 270 NDETFGKMKKGVRIINVARGGVIDEEALVRALDSGRV 306 (600)
Q Consensus 270 ~~~~l~~mk~gailvNvarg~ivde~aL~~aL~~g~i 306 (600)
.+ ..+ +..++++++++. . .+++.++.++..+
T Consensus 87 ~~-~~~-~g~~~i~~~~~~---~-~~~l~~~a~~~Gi 117 (138)
T 1y81_A 87 KE-AVE-AGFKKLWFQPGA---E-SEEIRRFLEKAGV 117 (138)
T ss_dssp HH-HHH-TTCCEEEECTTS---C-CHHHHHHHHHHTC
T ss_pred HH-HHH-cCCCEEEEcCcc---H-HHHHHHHHHHCCC
Confidence 43 333 667788888743 2 4555555555433
|
| >1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A* | Back alignment and structure |
|---|
Probab=97.91 E-value=8.4e-06 Score=84.57 Aligned_cols=93 Identities=20% Similarity=0.232 Sum_probs=69.9
Q ss_pred cceeccCCEEEEEecChh-HHHHHHHhhcCCCEEEEECCCCC--hhHHHHcCC---cc--------cCHHHHhccCCEEE
Q 007512 191 VGVSLVGKTLAVLGFGKV-GSEVARRAKGLGMHVIAHDPYAP--ADRARAIGV---DL--------VSFDEAIATADFIS 256 (600)
Q Consensus 191 ~g~~l~gktiGIIGlG~I-G~~vA~~l~~~g~~V~~~d~~~~--~~~a~~~g~---~~--------~~l~ell~~aDvV~ 256 (600)
.|.++.|+++.|||.|.| |+.+|+.|.+.|.+|..+|+... ...+.+.+. .. .++.+.+++||+|+
T Consensus 171 ~g~~l~gk~vvVIG~G~iVG~~~A~~L~~~gAtVtv~nR~~~~l~~ra~~la~~~~~~t~~~~t~~~~L~e~l~~ADIVI 250 (320)
T 1edz_A 171 EGNRLYGKKCIVINRSEIVGRPLAALLANDGATVYSVDVNNIQKFTRGESLKLNKHHVEDLGEYSEDLLKKCSLDSDVVI 250 (320)
T ss_dssp TTCTTTTCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSSEEEEEESCCCSSCCCCEEEEEEECCHHHHHHHHHHCSEEE
T ss_pred cCCCCCCCEEEEECCCcchHHHHHHHHHHCCCEEEEEeCchHHHHhHHHHHhhhcccccccccccHhHHHHHhccCCEEE
Confidence 577899999999999975 99999999999999999987521 111111111 11 35889999999999
Q ss_pred EecCCCccccccccHhHhccCCCceEEEEccCC
Q 007512 257 LHMPLTPATSKVLNDETFGKMKKGVRIINVARG 289 (600)
Q Consensus 257 l~~Pl~~~t~~li~~~~l~~mk~gailvNvarg 289 (600)
.+++.. .-++..+. +|+|+++||+|..
T Consensus 251 sAtg~p---~~vI~~e~---vk~GavVIDVgi~ 277 (320)
T 1edz_A 251 TGVPSE---NYKFPTEY---IKEGAVCINFACT 277 (320)
T ss_dssp ECCCCT---TCCBCTTT---SCTTEEEEECSSS
T ss_pred ECCCCC---cceeCHHH---cCCCeEEEEcCCC
Confidence 999842 22366655 4899999999864
|
| >3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.91 E-value=5.9e-06 Score=78.12 Aligned_cols=94 Identities=16% Similarity=0.312 Sum_probs=65.9
Q ss_pred eeccCCEEEEEecChhHHHHHHHhhcC-CCEEEEECCCCC-hhHHHHcCCccc-----C---HHHH--hccCCEEEEecC
Q 007512 193 VSLVGKTLAVLGFGKVGSEVARRAKGL-GMHVIAHDPYAP-ADRARAIGVDLV-----S---FDEA--IATADFISLHMP 260 (600)
Q Consensus 193 ~~l~gktiGIIGlG~IG~~vA~~l~~~-g~~V~~~d~~~~-~~~a~~~g~~~~-----~---l~el--l~~aDvV~l~~P 260 (600)
.++.+++++|+|+|.+|+.+|+.|+.. |++|+++|++.. .+.+.+.|+... + +.++ +.++|+|++++|
T Consensus 35 ~~~~~~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~~~~~~~~~~~g~~~~~gd~~~~~~l~~~~~~~~ad~vi~~~~ 114 (183)
T 3c85_A 35 INPGHAQVLILGMGRIGTGAYDELRARYGKISLGIEIREEAAQQHRSEGRNVISGDATDPDFWERILDTGHVKLVLLAMP 114 (183)
T ss_dssp BCCTTCSEEEECCSHHHHHHHHHHHHHHCSCEEEEESCHHHHHHHHHTTCCEEECCTTCHHHHHTBCSCCCCCEEEECCS
T ss_pred cCCCCCcEEEECCCHHHHHHHHHHHhccCCeEEEEECCHHHHHHHHHCCCCEEEcCCCCHHHHHhccCCCCCCEEEEeCC
Confidence 457788999999999999999999998 999999998762 344555676432 2 3444 678999999999
Q ss_pred CCccccccccHhHhccCCCceEEEEccC
Q 007512 261 LTPATSKVLNDETFGKMKKGVRIINVAR 288 (600)
Q Consensus 261 l~~~t~~li~~~~l~~mk~gailvNvar 288 (600)
..+.+..++ ..+..+.++..++....
T Consensus 115 ~~~~~~~~~--~~~~~~~~~~~ii~~~~ 140 (183)
T 3c85_A 115 HHQGNQTAL--EQLQRRNYKGQIAAIAE 140 (183)
T ss_dssp SHHHHHHHH--HHHHHTTCCSEEEEEES
T ss_pred ChHHHHHHH--HHHHHHCCCCEEEEEEC
Confidence 544333222 23445665656665433
|
| >3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A* | Back alignment and structure |
|---|
Probab=97.88 E-value=2.3e-05 Score=79.46 Aligned_cols=93 Identities=20% Similarity=0.190 Sum_probs=67.6
Q ss_pred CCEEEEEecChhHHHHHHHhhcCCCEEEEECCCCCh-hHHHHcCCcccCHHHHhccCCEEEEecCCCccccccccHhHhc
Q 007512 197 GKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPA-DRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVLNDETFG 275 (600)
Q Consensus 197 gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~~-~~a~~~g~~~~~l~ell~~aDvV~l~~Pl~~~t~~li~~~~l~ 275 (600)
|+++.|+|.|.+|+.++..|...|.+|.++++.... +...+.++...+++++ .++|+|+.++|..-.....++.+.+.
T Consensus 118 ~k~vlvlGaGGaaraia~~L~~~G~~v~V~nRt~~ka~~la~~~~~~~~~~~l-~~~DiVInaTp~Gm~~~~~l~~~~l~ 196 (269)
T 3phh_A 118 YQNALILGAGGSAKALACELKKQGLQVSVLNRSSRGLDFFQRLGCDCFMEPPK-SAFDLIINATSASLHNELPLNKEVLK 196 (269)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTHHHHHHHTCEEESSCCS-SCCSEEEECCTTCCCCSCSSCHHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCeEecHHHh-ccCCEEEEcccCCCCCCCCCChHHHH
Confidence 899999999999999999999999999999988732 2222566655556554 38999999999763222234444222
Q ss_pred -cCCCceEEEEccCCc
Q 007512 276 -KMKKGVRIINVARGG 290 (600)
Q Consensus 276 -~mk~gailvNvarg~ 290 (600)
.++++.+++|+...+
T Consensus 197 ~~l~~~~~v~D~vY~P 212 (269)
T 3phh_A 197 GYFKEGKLAYDLAYGF 212 (269)
T ss_dssp HHHHHCSEEEESCCSS
T ss_pred hhCCCCCEEEEeCCCC
Confidence 456777788877665
|
| >3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum} | Back alignment and structure |
|---|
Probab=97.87 E-value=1.2e-05 Score=83.72 Aligned_cols=90 Identities=17% Similarity=0.212 Sum_probs=67.3
Q ss_pred CCEEEEEecChhHHHHHHHhhcCCCEEEEECCCCChhHHHHcCCcc--------------cCHHHHhccCCEEEEecCCC
Q 007512 197 GKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPADRARAIGVDL--------------VSFDEAIATADFISLHMPLT 262 (600)
Q Consensus 197 gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~~~~a~~~g~~~--------------~~l~ell~~aDvV~l~~Pl~ 262 (600)
.++|+|||.|.||..+|..|...|.+|.+||+....+...+.|... .++++ +..+|+|++|+|.
T Consensus 3 ~mkI~IiGaG~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~D~Vilavk~- 80 (335)
T 3ghy_A 3 LTRICIVGAGAVGGYLGARLALAGEAINVLARGATLQALQTAGLRLTEDGATHTLPVRATHDAAA-LGEQDVVIVAVKA- 80 (335)
T ss_dssp CCCEEEESCCHHHHHHHHHHHHTTCCEEEECCHHHHHHHHHTCEEEEETTEEEEECCEEESCHHH-HCCCSEEEECCCH-
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCEEEEEEChHHHHHHHHCCCEEecCCCeEEEeeeEECCHHH-cCCCCEEEEeCCc-
Confidence 3689999999999999999998899999999853333444555421 25665 5899999999994
Q ss_pred ccccccccHhHhccCCCceEEEEccCC
Q 007512 263 PATSKVLNDETFGKMKKGVRIINVARG 289 (600)
Q Consensus 263 ~~t~~li~~~~l~~mk~gailvNvarg 289 (600)
..+..++. .....++++++|+.+..|
T Consensus 81 ~~~~~~~~-~l~~~l~~~~~iv~~~nG 106 (335)
T 3ghy_A 81 PALESVAA-GIAPLIGPGTCVVVAMNG 106 (335)
T ss_dssp HHHHHHHG-GGSSSCCTTCEEEECCSS
T ss_pred hhHHHHHH-HHHhhCCCCCEEEEECCC
Confidence 44554442 233457889999999888
|
| >3hdj_A Probable ornithine cyclodeaminase; APC62486, bordetella pertussis TOH structural genomics, PSI-2, protein structure initiative; 1.70A {Bordetella pertussis} | Back alignment and structure |
|---|
Probab=97.86 E-value=5.2e-05 Score=78.58 Aligned_cols=88 Identities=20% Similarity=0.350 Sum_probs=67.2
Q ss_pred CCEEEEEecChhHHHHHHHhhc-CC-CEEEEECCCCChhHHHH----cCCc--ccCHHHHhccCCEEEEecCCCcccccc
Q 007512 197 GKTLAVLGFGKVGSEVARRAKG-LG-MHVIAHDPYAPADRARA----IGVD--LVSFDEAIATADFISLHMPLTPATSKV 268 (600)
Q Consensus 197 gktiGIIGlG~IG~~vA~~l~~-~g-~~V~~~d~~~~~~~a~~----~g~~--~~~l~ell~~aDvV~l~~Pl~~~t~~l 268 (600)
.++++|||.|.+|+.+++.+.. ++ -+|.+||++.....+.+ .|+. ..++++++++||+|++|+|.. ..+
T Consensus 121 ~~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~~a~~la~~l~~~~g~~~~~~~~~eav~~aDIVi~aT~s~---~pv 197 (313)
T 3hdj_A 121 SSVLGLFGAGTQGAEHAAQLSARFALEAILVHDPYASPEILERIGRRCGVPARMAAPADIAAQADIVVTATRST---TPL 197 (313)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECTTCCHHHHHHHHHHHTSCEEECCHHHHHHHCSEEEECCCCS---SCS
T ss_pred CcEEEEECccHHHHHHHHHHHHhCCCcEEEEECCcHHHHHHHHHHHhcCCeEEEeCHHHHHhhCCEEEEccCCC---Ccc
Confidence 6799999999999999999875 44 58999999832233332 3653 338999999999999999964 345
Q ss_pred ccHhHhccCCCceEEEEccCCc
Q 007512 269 LNDETFGKMKKGVRIINVARGG 290 (600)
Q Consensus 269 i~~~~l~~mk~gailvNvarg~ 290 (600)
+.. ..+|||+.++++|...
T Consensus 198 l~~---~~l~~G~~V~~vGs~~ 216 (313)
T 3hdj_A 198 FAG---QALRAGAFVGAIGSSL 216 (313)
T ss_dssp SCG---GGCCTTCEEEECCCSS
T ss_pred cCH---HHcCCCcEEEECCCCC
Confidence 553 3579999999998643
|
| >2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=97.83 E-value=5.4e-05 Score=77.79 Aligned_cols=95 Identities=14% Similarity=0.145 Sum_probs=69.5
Q ss_pred eeccCCEEEEEecChhHHHHHHHhhcCCC-EEEEECCCCCh--hHHHHcCC---ccc---CHHHHhccCCEEEEecCCCc
Q 007512 193 VSLVGKTLAVLGFGKVGSEVARRAKGLGM-HVIAHDPYAPA--DRARAIGV---DLV---SFDEAIATADFISLHMPLTP 263 (600)
Q Consensus 193 ~~l~gktiGIIGlG~IG~~vA~~l~~~g~-~V~~~d~~~~~--~~a~~~g~---~~~---~l~ell~~aDvV~l~~Pl~~ 263 (600)
..+.|++++|+|.|.+|+.++..|...|+ +|.++|+.... +.+.+.+. ... ++.+.+.++|+|+.++|...
T Consensus 137 ~~l~~~~vlVlGaGg~g~aia~~L~~~G~~~V~v~nR~~~ka~~la~~~~~~~~~~~~~~~~~~~~~~aDivIn~t~~~~ 216 (297)
T 2egg_A 137 ITLDGKRILVIGAGGGARGIYFSLLSTAAERIDMANRTVEKAERLVREGDERRSAYFSLAEAETRLAEYDIIINTTSVGM 216 (297)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHSCSSSCCEECHHHHHHTGGGCSEEEECSCTTC
T ss_pred CCCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhhhccCceeeHHHHHhhhccCCEEEECCCCCC
Confidence 35789999999999999999999999998 99999987522 22333343 222 45677889999999999654
Q ss_pred cc--cc-cccHhHhccCCCceEEEEccCCc
Q 007512 264 AT--SK-VLNDETFGKMKKGVRIINVARGG 290 (600)
Q Consensus 264 ~t--~~-li~~~~l~~mk~gailvNvarg~ 290 (600)
.. .. .++ ...++++.+++|+.-.+
T Consensus 217 ~~~~~~~~i~---~~~l~~~~~v~D~~y~P 243 (297)
T 2egg_A 217 HPRVEVQPLS---LERLRPGVIVSDIIYNP 243 (297)
T ss_dssp SSCCSCCSSC---CTTCCTTCEEEECCCSS
T ss_pred CCCCCCCCCC---HHHcCCCCEEEEcCCCC
Confidence 21 11 122 24578899999998754
|
| >2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A | Back alignment and structure |
|---|
Probab=97.83 E-value=4.3e-05 Score=63.22 Aligned_cols=69 Identities=12% Similarity=0.114 Sum_probs=54.5
Q ss_pred EEEEecCCCCChhhHHhhhhcCCccccceEeeeecCCCcEEEEEEeC--CC-CcHHHHHHHhcCCCcceEEEee
Q 007512 529 ILCRQVDQPGMIGTVGSILGSENVNVSFMSVGRVAPRKHAVMAIGVD--EQ-PRKETLKKIGDVPAIEEFVFLK 599 (600)
Q Consensus 529 Liv~~~D~pG~Ia~V~~iL~~~~INIa~m~v~R~~~g~~al~~i~~D--~~-~~~~~l~~l~~~~~v~~v~~i~ 599 (600)
+-+...|+||+++.|+++|+++|+||.++...+.. + .+.+.+.++ +. .-++++++|+++++|.++..+.
T Consensus 8 l~v~~~Dr~G~L~~I~~~la~~~inI~~i~~~~~~-~-~~~~~i~v~~~~~~~l~~l~~~L~~~~~V~~v~~~~ 79 (88)
T 2ko1_A 8 IRIVGEDKNGMTNQITGVISKFDTNIRTIVLNAKD-G-IFTCNLMIFVKNTDKLTTLMDKLRKVQGVFTVERLS 79 (88)
T ss_dssp EEEEEECCTTHHHHHHHHHTTSSSCEEEEEEEECS-S-EEEEEEEEEESSHHHHHHHHHHHTTCTTEEEEEEEC
T ss_pred EEEEEECCCcHHHHHHHHHHHCCCCeEEEEEEEcC-C-EEEEEEEEEECCHHHHHHHHHHHhcCCCceEEEEec
Confidence 45668899999999999999999999999997643 3 555555543 32 2358999999999999988764
|
| >2i76_A Hypothetical protein; NADP, dehydrogenase, TM1727, structural genomics, PSI-2, protein structure initiative; HET: NDP; 3.00A {Thermotoga maritima} SCOP: a.100.1.10 c.2.1.6 | Back alignment and structure |
|---|
Probab=97.83 E-value=4e-06 Score=85.01 Aligned_cols=85 Identities=8% Similarity=0.043 Sum_probs=55.4
Q ss_pred CEEEEEecChhHHHHHHHhhcCCCEE-EEECCCCC-hhHH-HHcCCcccCHHHHhccCCEEEEecCCCccccccccHhHh
Q 007512 198 KTLAVLGFGKVGSEVARRAKGLGMHV-IAHDPYAP-ADRA-RAIGVDLVSFDEAIATADFISLHMPLTPATSKVLNDETF 274 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~g~~V-~~~d~~~~-~~~a-~~~g~~~~~l~ell~~aDvV~l~~Pl~~~t~~li~~~~l 274 (600)
++|||||+|.||+.+|+.|... ++| .+||++.. .+.. ...|....++++++++||+|++|+|... .. +.+
T Consensus 3 m~I~iIG~G~mG~~la~~l~~~-~~v~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~DvVilav~~~~-~~-----~v~ 75 (276)
T 2i76_A 3 LVLNFVGTGTLTRFFLECLKDR-YEIGYILSRSIDRARNLAEVYGGKAATLEKHPELNGVVFVIVPDRY-IK-----TVA 75 (276)
T ss_dssp -CCEEESCCHHHHHHHHTTC-----CCCEECSSHHHHHHHHHHTCCCCCSSCCCCC---CEEECSCTTT-HH-----HHH
T ss_pred ceEEEEeCCHHHHHHHHHHHHc-CcEEEEEeCCHHHHHHHHHHcCCccCCHHHHHhcCCEEEEeCChHH-HH-----HHH
Confidence 4799999999999999999876 888 48998752 2222 2445522367788899999999999543 22 333
Q ss_pred ccC-CCceEEEEccCC
Q 007512 275 GKM-KKGVRIINVARG 289 (600)
Q Consensus 275 ~~m-k~gailvNvarg 289 (600)
..+ +++.+|||++-+
T Consensus 76 ~~l~~~~~ivi~~s~~ 91 (276)
T 2i76_A 76 NHLNLGDAVLVHCSGF 91 (276)
T ss_dssp TTTCCSSCCEEECCSS
T ss_pred HHhccCCCEEEECCCC
Confidence 333 688999999854
|
| >3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A* | Back alignment and structure |
|---|
Probab=97.82 E-value=2.6e-05 Score=79.46 Aligned_cols=96 Identities=9% Similarity=0.134 Sum_probs=67.6
Q ss_pred eeccCCEEEEEecChhHHHHHHHhhcCCC-EEEEECCCCChhHHHHcCCcc---cCHHHHhccCCEEEEecCCC--cccc
Q 007512 193 VSLVGKTLAVLGFGKVGSEVARRAKGLGM-HVIAHDPYAPADRARAIGVDL---VSFDEAIATADFISLHMPLT--PATS 266 (600)
Q Consensus 193 ~~l~gktiGIIGlG~IG~~vA~~l~~~g~-~V~~~d~~~~~~~a~~~g~~~---~~l~ell~~aDvV~l~~Pl~--~~t~ 266 (600)
..+.||++.|+|.|.+|+.++..|...|+ +|.++++...........+.. .++.+.++++|+|+.++|.. +...
T Consensus 113 ~~l~~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~aDiVInaTp~Gm~~~~~ 192 (277)
T 3don_A 113 EGIEDAYILILGAGGASKGIANELYKIVRPTLTVANRTMSRFNNWSLNINKINLSHAESHLDEFDIIINTTPAGMNGNTD 192 (277)
T ss_dssp TTGGGCCEEEECCSHHHHHHHHHHHTTCCSCCEEECSCGGGGTTCCSCCEEECHHHHHHTGGGCSEEEECCC-------C
T ss_pred CCcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhcccccHhhHHHHhcCCCEEEECccCCCCCCCc
Confidence 45789999999999999999999999998 899999875322111122222 24566788999999999964 2222
Q ss_pred ccccHhHhccCCCceEEEEccCCcc
Q 007512 267 KVLNDETFGKMKKGVRIINVARGGV 291 (600)
Q Consensus 267 ~li~~~~l~~mk~gailvNvarg~i 291 (600)
..++ .+.++++.+++|+...+.
T Consensus 193 ~~l~---~~~l~~~~~V~D~vY~P~ 214 (277)
T 3don_A 193 SVIS---LNRLASHTLVSDIVYNPY 214 (277)
T ss_dssp CSSC---CTTCCSSCEEEESCCSSS
T ss_pred CCCC---HHHcCCCCEEEEecCCCC
Confidence 2232 455789999999986654
|
| >3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus} | Back alignment and structure |
|---|
Probab=97.82 E-value=5.5e-05 Score=78.27 Aligned_cols=107 Identities=17% Similarity=0.146 Sum_probs=75.9
Q ss_pred CEEEEEecChhHHHHHHHhhcCCCEEEEECCCCChhHHHHcCCc---------------c-cCHHHHhccCCEEEEecCC
Q 007512 198 KTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPADRARAIGVD---------------L-VSFDEAIATADFISLHMPL 261 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~~~~a~~~g~~---------------~-~~l~ell~~aDvV~l~~Pl 261 (600)
++|+|||.|.||..+|..|...|.+|..+++.. .+...+.|+. . .+++++.+.+|+|++++|.
T Consensus 3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~-~~~i~~~Gl~~~~~~~g~~~~~~~~~~~~~~~~~~~~DlVilavK~ 81 (320)
T 3i83_A 3 LNILVIGTGAIGSFYGALLAKTGHCVSVVSRSD-YETVKAKGIRIRSATLGDYTFRPAAVVRSAAELETKPDCTLLCIKV 81 (320)
T ss_dssp CEEEEESCCHHHHHHHHHHHHTTCEEEEECSTT-HHHHHHHCEEEEETTTCCEEECCSCEESCGGGCSSCCSEEEECCCC
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCh-HHHHHhCCcEEeecCCCcEEEeeeeeECCHHHcCCCCCEEEEecCC
Confidence 589999999999999999998899999999875 3444444421 1 2456666689999999995
Q ss_pred CccccccccHhHhccCCCceEEEEccCCccccHHHHHHhHhcCCceE
Q 007512 262 TPATSKVLNDETFGKMKKGVRIINVARGGVIDEEALVRALDSGRVAQ 308 (600)
Q Consensus 262 ~~~t~~li~~~~l~~mk~gailvNvarg~ivde~aL~~aL~~g~i~g 308 (600)
.. +...+ +.....++++.+|+.+..|= -.++.+.+.+...++.+
T Consensus 82 ~~-~~~~l-~~l~~~l~~~t~Iv~~~nGi-~~~~~l~~~~~~~~vl~ 125 (320)
T 3i83_A 82 VE-GADRV-GLLRDAVAPDTGIVLISNGI-DIEPEVAAAFPDNEVIS 125 (320)
T ss_dssp CT-TCCHH-HHHTTSCCTTCEEEEECSSS-SCSHHHHHHSTTSCEEE
T ss_pred CC-hHHHH-HHHHhhcCCCCEEEEeCCCC-ChHHHHHHHCCCCcEEE
Confidence 54 45444 33344578889999887763 23466666666555443
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
Probab=97.73 E-value=3.5e-05 Score=70.94 Aligned_cols=99 Identities=17% Similarity=0.150 Sum_probs=61.6
Q ss_pred ccceeccCCEEEEEecChhHHHHHHHhhcCCCEEEEECCCCC-hhHHH-HcCCccc-----C---HHHH-hccCCEEEEe
Q 007512 190 YVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAP-ADRAR-AIGVDLV-----S---FDEA-IATADFISLH 258 (600)
Q Consensus 190 ~~g~~l~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~-~~~a~-~~g~~~~-----~---l~el-l~~aDvV~l~ 258 (600)
++.....+++|.|+|+|.+|+.+|+.|+..|.+|+++|++.. .+.+. ..|...+ + +.+. +..+|+|+++
T Consensus 12 ~~~~~~~~~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~g~~~~~~d~~~~~~l~~~~~~~ad~Vi~~ 91 (155)
T 2g1u_A 12 HMSKKQKSKYIVIFGCGRLGSLIANLASSSGHSVVVVDKNEYAFHRLNSEFSGFTVVGDAAEFETLKECGMEKADMVFAF 91 (155)
T ss_dssp -----CCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGGGGSCTTCCSEEEESCTTSHHHHHTTTGGGCSEEEEC
T ss_pred hhhcccCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHhcCCCcEEEecCCCHHHHHHcCcccCCEEEEE
Confidence 356678899999999999999999999999999999998763 23333 3454321 2 2333 6789999999
Q ss_pred cCCCccccccccHhHhccCCCceEEEEccCCc
Q 007512 259 MPLTPATSKVLNDETFGKMKKGVRIINVARGG 290 (600)
Q Consensus 259 ~Pl~~~t~~li~~~~l~~mk~gailvNvarg~ 290 (600)
+|....+. .+ ......+.+...++-..++.
T Consensus 92 ~~~~~~~~-~~-~~~~~~~~~~~~iv~~~~~~ 121 (155)
T 2g1u_A 92 TNDDSTNF-FI-SMNARYMFNVENVIARVYDP 121 (155)
T ss_dssp SSCHHHHH-HH-HHHHHHTSCCSEEEEECSSG
T ss_pred eCCcHHHH-HH-HHHHHHHCCCCeEEEEECCH
Confidence 98433221 11 12233344445555554444
|
| >3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=97.70 E-value=0.0001 Score=75.98 Aligned_cols=106 Identities=18% Similarity=0.205 Sum_probs=74.9
Q ss_pred CEEEEEecChhHHHHHHHhhcCCCEEEEECCCCChhHHHHcCCcc---------------cCHHHHhccCCEEEEecCCC
Q 007512 198 KTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPADRARAIGVDL---------------VSFDEAIATADFISLHMPLT 262 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~~~~a~~~g~~~---------------~~l~ell~~aDvV~l~~Pl~ 262 (600)
++|+|||.|.||..+|..|...|.+|..|++.. .+...+.|+.. .+.+ .+..+|+|++++|..
T Consensus 3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~-~~~i~~~g~~~~~~~g~~~~~~~~~~~~~~-~~~~~D~vilavk~~ 80 (312)
T 3hn2_A 3 LRIAIVGAGALGLYYGALLQRSGEDVHFLLRRD-YEAIAGNGLKVFSINGDFTLPHVKGYRAPE-EIGPMDLVLVGLKTF 80 (312)
T ss_dssp -CEEEECCSTTHHHHHHHHHHTSCCEEEECSTT-HHHHHHTCEEEEETTCCEEESCCCEESCHH-HHCCCSEEEECCCGG
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCeEEEEEcCc-HHHHHhCCCEEEcCCCeEEEeeceeecCHH-HcCCCCEEEEecCCC
Confidence 579999999999999999998899999999875 44444555421 1344 368999999999944
Q ss_pred ccccccccHhHhccCCCceEEEEccCCccccHHHHHHhHhcCCceE
Q 007512 263 PATSKVLNDETFGKMKKGVRIINVARGGVIDEEALVRALDSGRVAQ 308 (600)
Q Consensus 263 ~~t~~li~~~~l~~mk~gailvNvarg~ivde~aL~~aL~~g~i~g 308 (600)
.+...+ +..-..++++.+||.+.-|= -.++.+.+.+...++.+
T Consensus 81 -~~~~~l-~~l~~~l~~~~~iv~l~nGi-~~~~~l~~~~~~~~v~~ 123 (312)
T 3hn2_A 81 -ANSRYE-ELIRPLVEEGTQILTLQNGL-GNEEALATLFGAERIIG 123 (312)
T ss_dssp -GGGGHH-HHHGGGCCTTCEEEECCSSS-SHHHHHHHHTCGGGEEE
T ss_pred -CcHHHH-HHHHhhcCCCCEEEEecCCC-CcHHHHHHHCCCCcEEE
Confidence 344444 23334578899999988763 23566767676555544
|
| >2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae} | Back alignment and structure |
|---|
Probab=97.68 E-value=1.9e-05 Score=72.56 Aligned_cols=101 Identities=14% Similarity=0.215 Sum_probs=73.3
Q ss_pred CCEEEEEec----ChhHHHHHHHhhcCCCEEEEECCCCChhHHHHcCCccc-CHHHHhccCCEEEEecCCCccccccccH
Q 007512 197 GKTLAVLGF----GKVGSEVARRAKGLGMHVIAHDPYAPADRARAIGVDLV-SFDEAIATADFISLHMPLTPATSKVLND 271 (600)
Q Consensus 197 gktiGIIGl----G~IG~~vA~~l~~~g~~V~~~d~~~~~~~a~~~g~~~~-~l~ell~~aDvV~l~~Pl~~~t~~li~~ 271 (600)
-++|+|||+ |.+|..+++.|+..|++|+.+||....+. -.|+... +++++...+|++++++| .+....++.+
T Consensus 13 p~~IavIGas~~~g~~G~~~~~~L~~~G~~v~~vnp~~~g~~--i~G~~~~~sl~el~~~~Dlvii~vp-~~~v~~v~~~ 89 (145)
T 2duw_A 13 TRTIALVGASDKPDRPSYRVMKYLLDQGYHVIPVSPKVAGKT--LLGQQGYATLADVPEKVDMVDVFRN-SEAAWGVAQE 89 (145)
T ss_dssp CCCEEEESCCSCTTSHHHHHHHHHHHHTCCEEEECSSSTTSE--ETTEECCSSTTTCSSCCSEEECCSC-STHHHHHHHH
T ss_pred CCEEEEECcCCCCCChHHHHHHHHHHCCCEEEEeCCcccccc--cCCeeccCCHHHcCCCCCEEEEEeC-HHHHHHHHHH
Confidence 578999999 89999999999988999999998751011 1466544 78898889999999999 4656666643
Q ss_pred hHhccCCCceEEEEccCCccccHHHHHHhHhcCCc
Q 007512 272 ETFGKMKKGVRIINVARGGVIDEEALVRALDSGRV 306 (600)
Q Consensus 272 ~~l~~mk~gailvNvarg~ivde~aL~~aL~~g~i 306 (600)
..+ ...+.++++.+ .. ++++.+++++..+
T Consensus 90 -~~~-~g~~~i~i~~~--~~--~~~l~~~a~~~Gi 118 (145)
T 2duw_A 90 -AIA-IGAKTLWLQLG--VI--NEQAAVLAREAGL 118 (145)
T ss_dssp -HHH-HTCCEEECCTT--CC--CHHHHHHHHTTTC
T ss_pred -HHH-cCCCEEEEcCC--hH--HHHHHHHHHHcCC
Confidence 333 56677888763 22 5666666766544
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=97.68 E-value=3.2e-05 Score=70.09 Aligned_cols=90 Identities=18% Similarity=0.315 Sum_probs=62.6
Q ss_pred CCEEEEEecChhHHHHHHHhhcCCCEEEEECCCC-ChhHHHHcCCccc-----C---HHH-HhccCCEEEEecCCCcccc
Q 007512 197 GKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYA-PADRARAIGVDLV-----S---FDE-AIATADFISLHMPLTPATS 266 (600)
Q Consensus 197 gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~-~~~~a~~~g~~~~-----~---l~e-ll~~aDvV~l~~Pl~~~t~ 266 (600)
..++.|+|+|.+|+.+|+.|+..|++|+++|++. ..+.+.+.|+..+ + +++ -+.++|+|++++|....+.
T Consensus 7 ~~~viIiG~G~~G~~la~~L~~~g~~v~vid~~~~~~~~~~~~g~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~~~~n~ 86 (140)
T 3fwz_A 7 CNHALLVGYGRVGSLLGEKLLASDIPLVVIETSRTRVDELRERGVRAVLGNAANEEIMQLAHLECAKWLILTIPNGYEAG 86 (140)
T ss_dssp CSCEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTTCEEEESCTTSHHHHHHTTGGGCSEEEECCSCHHHHH
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHcCCCEEECCCCCHHHHHhcCcccCCEEEEECCChHHHH
Confidence 3579999999999999999999999999999886 3345556676432 2 222 2578999999999655443
Q ss_pred ccccHhHhccCCCceEEEEccC
Q 007512 267 KVLNDETFGKMKKGVRIINVAR 288 (600)
Q Consensus 267 ~li~~~~l~~mk~gailvNvar 288 (600)
.++ ..+..+.++..+|--.+
T Consensus 87 ~~~--~~a~~~~~~~~iiar~~ 106 (140)
T 3fwz_A 87 EIV--ASARAKNPDIEIIARAH 106 (140)
T ss_dssp HHH--HHHHHHCSSSEEEEEES
T ss_pred HHH--HHHHHHCCCCeEEEEEC
Confidence 332 23444556666664433
|
| >1x7d_A Ornithine cyclodeaminase; binds NAD+, binds L-ornithine, binds L-proline, 2 bundle, beta barrel, rossmann fold, lyase; HET: NAD ORN MES; 1.60A {Pseudomonas putida} SCOP: c.2.1.13 PDB: 1u7h_A* | Back alignment and structure |
|---|
Probab=97.66 E-value=0.00011 Score=77.25 Aligned_cols=90 Identities=18% Similarity=0.238 Sum_probs=66.2
Q ss_pred cCCEEEEEecChhHHHHHHHhh-cCC-CEEEEECCCCC-hh-HHHHc----CCc---ccCHHHHhccCCEEEEecCCCcc
Q 007512 196 VGKTLAVLGFGKVGSEVARRAK-GLG-MHVIAHDPYAP-AD-RARAI----GVD---LVSFDEAIATADFISLHMPLTPA 264 (600)
Q Consensus 196 ~gktiGIIGlG~IG~~vA~~l~-~~g-~~V~~~d~~~~-~~-~a~~~----g~~---~~~l~ell~~aDvV~l~~Pl~~~ 264 (600)
..+++||||.|.+|+.+++.+. ..+ .+|.+||+... .+ .+... |+. ..++++++++||+|++|+|...
T Consensus 128 ~~~~v~iIGaG~~a~~~a~al~~~~~~~~V~V~~r~~~~a~~la~~~~~~~g~~~~~~~~~~eav~~aDiVi~aTps~~- 206 (350)
T 1x7d_A 128 NARKMALIGNGAQSEFQALAFHKHLGIEEIVAYDTDPLATAKLIANLKEYSGLTIRRASSVAEAVKGVDIITTVTADKA- 206 (350)
T ss_dssp TCCEEEEECCSTTHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHTTCTTCEEEECSSHHHHHTTCSEEEECCCCSS-
T ss_pred cCCeEEEECCcHHHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHhccCceEEEeCCHHHHHhcCCEEEEeccCCC-
Confidence 3679999999999999998875 344 58999998762 22 22222 532 2478999999999999999652
Q ss_pred ccccccHhHhccCCCceEEEEccCC
Q 007512 265 TSKVLNDETFGKMKKGVRIINVARG 289 (600)
Q Consensus 265 t~~li~~~~l~~mk~gailvNvarg 289 (600)
...++.. +.+++|..+++++..
T Consensus 207 ~~pvl~~---~~l~~G~~V~~vgs~ 228 (350)
T 1x7d_A 207 YATIITP---DMLEPGMHLNAVGGD 228 (350)
T ss_dssp EEEEECG---GGCCTTCEEEECSCC
T ss_pred CCceecH---HHcCCCCEEEECCCC
Confidence 2344543 457999999999864
|
| >3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.66 E-value=6.1e-05 Score=75.72 Aligned_cols=100 Identities=20% Similarity=0.259 Sum_probs=71.4
Q ss_pred ccCCEEEEEecChhHHHHHHHhhcCCC-EEEEECCCCChhHHHHcC--C---cccCHHHHhccCCEEEEecCCC--cccc
Q 007512 195 LVGKTLAVLGFGKVGSEVARRAKGLGM-HVIAHDPYAPADRARAIG--V---DLVSFDEAIATADFISLHMPLT--PATS 266 (600)
Q Consensus 195 l~gktiGIIGlG~IG~~vA~~l~~~g~-~V~~~d~~~~~~~a~~~g--~---~~~~l~ell~~aDvV~l~~Pl~--~~t~ 266 (600)
+.| +++|||.|.+|+.++..|...|. +|.++|+.. ++++++- + .+.++.+.++++|+|+.++|.. ++ .
T Consensus 107 ~~~-~vliiGaGg~a~ai~~~L~~~G~~~I~v~nR~~--~ka~~la~~~~~~~~~~~~~~~~~aDiVInatp~gm~p~-~ 182 (253)
T 3u62_A 107 VKE-PVVVVGAGGAARAVIYALLQMGVKDIWVVNRTI--ERAKALDFPVKIFSLDQLDEVVKKAKSLFNTTSVGMKGE-E 182 (253)
T ss_dssp CCS-SEEEECCSHHHHHHHHHHHHTTCCCEEEEESCH--HHHHTCCSSCEEEEGGGHHHHHHTCSEEEECSSTTTTSC-C
T ss_pred CCC-eEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCH--HHHHHHHHHcccCCHHHHHhhhcCCCEEEECCCCCCCCC-C
Confidence 578 99999999999999999999998 899999864 3333321 1 2346778899999999999964 22 1
Q ss_pred ccccHhHhccCCCceEEEEccCCccccHHHHHHhHhcC
Q 007512 267 KVLNDETFGKMKKGVRIINVARGGVIDEEALVRALDSG 304 (600)
Q Consensus 267 ~li~~~~l~~mk~gailvNvarg~ivde~aL~~aL~~g 304 (600)
..++.+. ++++.+++|+.-+ ...-+.++.+.|
T Consensus 183 ~~i~~~~---l~~~~~V~Divy~---~T~ll~~A~~~G 214 (253)
T 3u62_A 183 LPVSDDS---LKNLSLVYDVIYF---DTPLVVKARKLG 214 (253)
T ss_dssp CSCCHHH---HTTCSEEEECSSS---CCHHHHHHHHHT
T ss_pred CCCCHHH---hCcCCEEEEeeCC---CcHHHHHHHHCC
Confidence 2344333 5789999999887 344444444444
|
| >3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=97.65 E-value=6.9e-05 Score=77.54 Aligned_cols=103 Identities=18% Similarity=0.232 Sum_probs=70.4
Q ss_pred ccCCEEEEEecChhHHHHHHHhhcCCCEEEEECCCC-ChhHHHHcCCc-------------c-cCHHHHhccCCEEEEec
Q 007512 195 LVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYA-PADRARAIGVD-------------L-VSFDEAIATADFISLHM 259 (600)
Q Consensus 195 l~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~-~~~~a~~~g~~-------------~-~~l~ell~~aDvV~l~~ 259 (600)
...++|+|||.|.||..+|..|...|.+|..| ++. ..+...+.|.. . .++++ +..+|+|++++
T Consensus 17 ~~~~kI~IiGaGa~G~~~a~~L~~~G~~V~l~-~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~D~vilav 94 (318)
T 3hwr_A 17 FQGMKVAIMGAGAVGCYYGGMLARAGHEVILI-ARPQHVQAIEATGLRLETQSFDEQVKVSASSDPSA-VQGADLVLFCV 94 (318)
T ss_dssp ---CEEEEESCSHHHHHHHHHHHHTTCEEEEE-CCHHHHHHHHHHCEEEECSSCEEEECCEEESCGGG-GTTCSEEEECC
T ss_pred ccCCcEEEECcCHHHHHHHHHHHHCCCeEEEE-EcHhHHHHHHhCCeEEEcCCCcEEEeeeeeCCHHH-cCCCCEEEEEc
Confidence 34678999999999999999999889999999 554 23334444431 1 23444 68999999999
Q ss_pred CCCccccccccHhHhccCCCceEEEEccCCccccHHHHHHhHh
Q 007512 260 PLTPATSKVLNDETFGKMKKGVRIINVARGGVIDEEALVRALD 302 (600)
Q Consensus 260 Pl~~~t~~li~~~~l~~mk~gailvNvarg~ivde~aL~~aL~ 302 (600)
|.. .++.++ +.....++++++|+.+..|=- .++.+.+.+.
T Consensus 95 k~~-~~~~~l-~~l~~~l~~~~~iv~~~nGi~-~~~~l~~~~~ 134 (318)
T 3hwr_A 95 KST-DTQSAA-LAMKPALAKSALVLSLQNGVE-NADTLRSLLE 134 (318)
T ss_dssp CGG-GHHHHH-HHHTTTSCTTCEEEEECSSSS-HHHHHHHHCC
T ss_pred ccc-cHHHHH-HHHHHhcCCCCEEEEeCCCCC-cHHHHHHHcC
Confidence 954 455544 233445788999999877632 2455666554
|
| >1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=97.56 E-value=0.00013 Score=64.85 Aligned_cols=87 Identities=16% Similarity=0.195 Sum_probs=56.4
Q ss_pred CCEEEEEecChhHHHHHHHhhcCCCEEEEECCCCC-hhHHH-HcCCccc-----CHHH----HhccCCEEEEecCCCccc
Q 007512 197 GKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAP-ADRAR-AIGVDLV-----SFDE----AIATADFISLHMPLTPAT 265 (600)
Q Consensus 197 gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~-~~~a~-~~g~~~~-----~l~e----ll~~aDvV~l~~Pl~~~t 265 (600)
+++|+|+|+|.+|+.+|+.|...|.+|.++|++.. .+... ..++... +.+. .+.++|+|++++|.....
T Consensus 4 ~m~i~IiG~G~iG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~d~vi~~~~~~~~~ 83 (140)
T 1lss_A 4 GMYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEIDALVINGDCTKIKTLEDAGIEDADMYIAVTGKEEVN 83 (140)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCSSEEEESCTTSHHHHHHTTTTTCSEEEECCSCHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHhcCcEEEEcCCCCHHHHHHcCcccCCEEEEeeCCchHH
Confidence 57899999999999999999999999999998652 22222 2355321 2222 267899999999854321
Q ss_pred cccccHhHhccCCCceEEEE
Q 007512 266 SKVLNDETFGKMKKGVRIIN 285 (600)
Q Consensus 266 ~~li~~~~l~~mk~gailvN 285 (600)
. .-......++++.+++-
T Consensus 84 ~--~~~~~~~~~~~~~ii~~ 101 (140)
T 1lss_A 84 L--MSSLLAKSYGINKTIAR 101 (140)
T ss_dssp H--HHHHHHHHTTCCCEEEE
T ss_pred H--HHHHHHHHcCCCEEEEE
Confidence 1 11223344666655543
|
| >3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} | Back alignment and structure |
|---|
Probab=97.53 E-value=8e-05 Score=64.16 Aligned_cols=87 Identities=18% Similarity=0.224 Sum_probs=60.7
Q ss_pred cCCEEEEEecChhHHHHHHHhhcCC-CEEEEECCCCC-hhHHHHcCCcc--------cCHHHHhccCCEEEEecCCCccc
Q 007512 196 VGKTLAVLGFGKVGSEVARRAKGLG-MHVIAHDPYAP-ADRARAIGVDL--------VSFDEAIATADFISLHMPLTPAT 265 (600)
Q Consensus 196 ~gktiGIIGlG~IG~~vA~~l~~~g-~~V~~~d~~~~-~~~a~~~g~~~--------~~l~ell~~aDvV~l~~Pl~~~t 265 (600)
.+++|+|+|.|.||+.+++.|...| .+|+++|++.. .+.....++.. .++.+++.++|+|+.++|... +
T Consensus 4 ~~~~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~d~vi~~~~~~~-~ 82 (118)
T 3ic5_A 4 MRWNICVVGAGKIGQMIAALLKTSSNYSVTVADHDLAALAVLNRMGVATKQVDAKDEAGLAKALGGFDAVISAAPFFL-T 82 (118)
T ss_dssp TCEEEEEECCSHHHHHHHHHHHHCSSEEEEEEESCHHHHHHHHTTTCEEEECCTTCHHHHHHHTTTCSEEEECSCGGG-H
T ss_pred CcCeEEEECCCHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhCCCcEEEecCCCHHHHHHHHcCCCEEEECCCchh-h
Confidence 3679999999999999999999999 89999998752 23333345432 135677889999999998432 1
Q ss_pred cccccHhHhccCCCceEEEEcc
Q 007512 266 SKVLNDETFGKMKKGVRIINVA 287 (600)
Q Consensus 266 ~~li~~~~l~~mk~gailvNva 287 (600)
..++ -...+.|...++.+
T Consensus 83 ~~~~----~~~~~~g~~~~~~~ 100 (118)
T 3ic5_A 83 PIIA----KAAKAAGAHYFDLT 100 (118)
T ss_dssp HHHH----HHHHHTTCEEECCC
T ss_pred HHHH----HHHHHhCCCEEEec
Confidence 1111 11235677788775
|
| >1omo_A Alanine dehydrogenase; two-domain, beta-sandwich-dimer, rossmann-fold NAD domain, human MU crystallin homolog; HET: NAD; 2.32A {Archaeoglobus fulgidus} SCOP: c.2.1.13 PDB: 1vll_A | Back alignment and structure |
|---|
Probab=97.46 E-value=0.00023 Score=73.90 Aligned_cols=87 Identities=15% Similarity=0.121 Sum_probs=63.5
Q ss_pred cCCEEEEEecChhHHHHHHHhhc-C-CCEEEEECCCCCh-h-HHHHcC-----CcccCHHHHhccCCEEEEecCCCcccc
Q 007512 196 VGKTLAVLGFGKVGSEVARRAKG-L-GMHVIAHDPYAPA-D-RARAIG-----VDLVSFDEAIATADFISLHMPLTPATS 266 (600)
Q Consensus 196 ~gktiGIIGlG~IG~~vA~~l~~-~-g~~V~~~d~~~~~-~-~a~~~g-----~~~~~l~ell~~aDvV~l~~Pl~~~t~ 266 (600)
..++++|||.|.+|+.+++.+.. + ..+|.+||++... + .+...+ +...++++++ +||+|++|+|.. .
T Consensus 124 ~~~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~~~~a~~la~~~~~~~~~~~~~~~~e~v-~aDvVi~aTp~~---~ 199 (322)
T 1omo_A 124 NSSVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVREKAAKKFVSYCEDRGISASVQPAEEAS-RCDVLVTTTPSR---K 199 (322)
T ss_dssp TCCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHHHTTCCEEECCHHHHT-SSSEEEECCCCS---S
T ss_pred CCCEEEEEcCcHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhcCceEEECCHHHHh-CCCEEEEeeCCC---C
Confidence 36799999999999999999875 4 3689999987622 2 222211 2344788999 999999999954 2
Q ss_pred ccccHhHhccCCCceEEEEccCC
Q 007512 267 KVLNDETFGKMKKGVRIINVARG 289 (600)
Q Consensus 267 ~li~~~~l~~mk~gailvNvarg 289 (600)
.++.. ..+++|..+++++..
T Consensus 200 pv~~~---~~l~~G~~V~~ig~~ 219 (322)
T 1omo_A 200 PVVKA---EWVEEGTHINAIGAD 219 (322)
T ss_dssp CCBCG---GGCCTTCEEEECSCC
T ss_pred ceecH---HHcCCCeEEEECCCC
Confidence 44443 357899999998643
|
| >3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B* | Back alignment and structure |
|---|
Probab=97.44 E-value=0.00013 Score=74.54 Aligned_cols=96 Identities=14% Similarity=0.130 Sum_probs=67.4
Q ss_pred ceeccCCEEEEEecChhHHHHHHHhhcCCC-EEEEECCCCCh--hHHHHcC----CcccCHHHHhccCCEEEEecCCCcc
Q 007512 192 GVSLVGKTLAVLGFGKVGSEVARRAKGLGM-HVIAHDPYAPA--DRARAIG----VDLVSFDEAIATADFISLHMPLTPA 264 (600)
Q Consensus 192 g~~l~gktiGIIGlG~IG~~vA~~l~~~g~-~V~~~d~~~~~--~~a~~~g----~~~~~l~ell~~aDvV~l~~Pl~~~ 264 (600)
+..+.|+++.|+|.|.+|+.++..|...|. +|..+++.... +.+.+.+ +...+++++..++|+|+.++|..-.
T Consensus 121 ~~~l~~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~~~a~~la~~~~~~~~~~~~~~~~l~~~aDiIInaTp~gm~ 200 (281)
T 3o8q_A 121 QVLLKGATILLIGAGGAARGVLKPLLDQQPASITVTNRTFAKAEQLAELVAAYGEVKAQAFEQLKQSYDVIINSTSASLD 200 (281)
T ss_dssp TCCCTTCEEEEECCSHHHHHHHHHHHTTCCSEEEEEESSHHHHHHHHHHHGGGSCEEEEEGGGCCSCEEEEEECSCCCC-
T ss_pred CCCccCCEEEEECchHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhccCCeeEeeHHHhcCCCCEEEEcCcCCCC
Confidence 456889999999999999999999999996 99999987522 1222222 2344667766899999999997532
Q ss_pred cc-ccccHhHhccCCCceEEEEccCCc
Q 007512 265 TS-KVLNDETFGKMKKGVRIINVARGG 290 (600)
Q Consensus 265 t~-~li~~~~l~~mk~gailvNvarg~ 290 (600)
.. -.++. +.++++.+++|+.-.+
T Consensus 201 ~~~~~l~~---~~l~~~~~V~DlvY~P 224 (281)
T 3o8q_A 201 GELPAIDP---VIFSSRSVCYDMMYGK 224 (281)
T ss_dssp ---CSCCG---GGEEEEEEEEESCCCS
T ss_pred CCCCCCCH---HHhCcCCEEEEecCCC
Confidence 11 12332 3456788888887554
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=97.44 E-value=0.00021 Score=64.30 Aligned_cols=65 Identities=17% Similarity=0.158 Sum_probs=48.7
Q ss_pred cCCEEEEEecChhHHHHHHHhhcCCCEEEEECCCCC-hhHHHHcCCccc-----CH---HHH-hccCCEEEEecC
Q 007512 196 VGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAP-ADRARAIGVDLV-----SF---DEA-IATADFISLHMP 260 (600)
Q Consensus 196 ~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~-~~~a~~~g~~~~-----~l---~el-l~~aDvV~l~~P 260 (600)
.++++.|+|+|.+|+.+|+.|...|.+|+++|++.. .+.+.+.|+... +. +++ +.++|+|++++|
T Consensus 5 ~~~~v~I~G~G~iG~~la~~L~~~g~~V~~id~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~~d~vi~~~~ 79 (141)
T 3llv_A 5 GRYEYIVIGSEAAGVGLVRELTAAGKKVLAVDKSKEKIELLEDEGFDAVIADPTDESFYRSLDLEGVSAVLITGS 79 (141)
T ss_dssp -CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTTCEEEECCTTCHHHHHHSCCTTCSEEEECCS
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHCCCcEEECCCCCHHHHHhCCcccCCEEEEecC
Confidence 357899999999999999999999999999998762 334455565321 22 222 467999999988
|
| >1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=97.39 E-value=0.0004 Score=70.19 Aligned_cols=94 Identities=14% Similarity=0.145 Sum_probs=65.1
Q ss_pred eeccCCEEEEEecChhHHHHHHHhhcCCCEEEEECCCCCh--hHHHHcC----CcccCHHHHh-ccCCEEEEecCCCccc
Q 007512 193 VSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPA--DRARAIG----VDLVSFDEAI-ATADFISLHMPLTPAT 265 (600)
Q Consensus 193 ~~l~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~~--~~a~~~g----~~~~~l~ell-~~aDvV~l~~Pl~~~t 265 (600)
..+.|+++.|+|.|.+|+.+++.|...|.+|.++|+.... +.+.+.+ +...+++++. .++|+|+.++|....
T Consensus 115 ~~l~~k~vlViGaGg~g~a~a~~L~~~G~~V~v~~R~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~DivVn~t~~~~~- 193 (271)
T 1nyt_A 115 FIRPGLRILLIGAGGASRGVLLPLLSLDCAVTITNRTVSRAEELAKLFAHTGSIQALSMDELEGHEFDLIINATSSGIS- 193 (271)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHTGGGSSEEECCSGGGTTCCCSEEEECCSCGGG-
T ss_pred cCcCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHhhccCCeeEecHHHhccCCCCEEEECCCCCCC-
Confidence 4577999999999999999999999999999999987522 2222322 1223444444 589999999996542
Q ss_pred ccc--ccHhHhccCCCceEEEEccCCc
Q 007512 266 SKV--LNDETFGKMKKGVRIINVARGG 290 (600)
Q Consensus 266 ~~l--i~~~~l~~mk~gailvNvarg~ 290 (600)
..+ +.. ..++++.+++|+.-..
T Consensus 194 ~~~~~i~~---~~l~~~~~v~D~~y~p 217 (271)
T 1nyt_A 194 GDIPAIPS---SLIHPGIYCYDMFYQK 217 (271)
T ss_dssp TCCCCCCG---GGCCTTCEEEESCCCS
T ss_pred CCCCCCCH---HHcCCCCEEEEeccCC
Confidence 111 222 2357888888887654
|
| >2qrj_A Saccharopine dehydrogenase, NAD+, L-lysine- forming; sulfate, rossmann fold, alpha-aminoadipate pathway, fungal lysine biosynthesis; 1.60A {Saccharomyces cerevisiae} PDB: 2qrk_A* 2qrl_A* 2q99_A 3ugk_A 3uh1_A* 3uha_A* | Back alignment and structure |
|---|
Probab=97.39 E-value=0.00011 Score=78.01 Aligned_cols=83 Identities=19% Similarity=0.313 Sum_probs=69.5
Q ss_pred cCCEEEEEec-ChhHHHHHHHhhcCCC---EEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEecCCCccccccccH
Q 007512 196 VGKTLAVLGF-GKVGSEVARRAKGLGM---HVIAHDPYAPADRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVLND 271 (600)
Q Consensus 196 ~gktiGIIGl-G~IG~~vA~~l~~~g~---~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Pl~~~t~~li~~ 271 (600)
..-++.|||. |..|...++.++++|. .|.++|.+.. ..|-. + +.++++|+|+.|+......-.++++
T Consensus 213 ~~~kV~ViG~~G~vG~~A~~~a~~lGa~~~~V~v~D~~~~-----~~g~~---~-~~i~~aDivIn~vlig~~aP~Lvt~ 283 (394)
T 2qrj_A 213 RKPTVLIIGALGRCGSGAIDLLHKVGIPDANILKWDIKET-----SRGGP---F-DEIPQADIFINCIYLSKPIAPFTNM 283 (394)
T ss_dssp CCCCEEEETTTSHHHHHHHHHHHHTTCCGGGEEEECHHHH-----TTCSC---C-THHHHSSEEEECCCCCSSCCCSCCH
T ss_pred CCCeEEEEcCCCHHHHHHHHHHHhCCCCcCceEEeecccc-----ccCCc---h-hhHhhCCEEEECcCcCCCCCcccCH
Confidence 3568999999 9999999999999998 8999997531 11322 2 3466999999999987777789999
Q ss_pred hHhccC-CCceEEEEcc
Q 007512 272 ETFGKM-KKGVRIINVA 287 (600)
Q Consensus 272 ~~l~~m-k~gailvNva 287 (600)
+.++.| |||++|||++
T Consensus 284 e~v~~m~k~gsVIVDVA 300 (394)
T 2qrj_A 284 EKLNNPNRRLRTVVDVS 300 (394)
T ss_dssp HHHCCTTCCCCEEEETT
T ss_pred HHHhcCcCCCeEEEEEe
Confidence 999999 9999999997
|
| >3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=97.35 E-value=0.00023 Score=73.25 Aligned_cols=103 Identities=16% Similarity=0.132 Sum_probs=68.9
Q ss_pred CEEEEEecChhHHHHHHHhhcCCCEEEEECCCC-ChhHHHHcCCcccC----------H-HHHhccCCEEEEecCCCccc
Q 007512 198 KTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYA-PADRARAIGVDLVS----------F-DEAIATADFISLHMPLTPAT 265 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~-~~~~a~~~g~~~~~----------l-~ell~~aDvV~l~~Pl~~~t 265 (600)
++|+|||.|.||..+|..|. .|.+|..+++.. ..+...+.|+...+ . .+....+|+|++++|.. .+
T Consensus 3 mkI~IiGaGa~G~~~a~~L~-~g~~V~~~~r~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~D~vilavK~~-~~ 80 (307)
T 3ego_A 3 LKIGIIGGGSVGLLCAYYLS-LYHDVTVVTRRQEQAAAIQSEGIRLYKGGEEFRADCSADTSINSDFDLLVVTVKQH-QL 80 (307)
T ss_dssp CEEEEECCSHHHHHHHHHHH-TTSEEEEECSCHHHHHHHHHHCEEEEETTEEEEECCEEESSCCSCCSEEEECCCGG-GH
T ss_pred CEEEEECCCHHHHHHHHHHh-cCCceEEEECCHHHHHHHHhCCceEecCCCeecccccccccccCCCCEEEEEeCHH-HH
Confidence 68999999999999999999 899999999875 33444555653221 1 24567899999999943 34
Q ss_pred cccccHhHhccCCCceEEEEccCCccccHHHHHHhHhcCCc
Q 007512 266 SKVLNDETFGKMKKGVRIINVARGGVIDEEALVRALDSGRV 306 (600)
Q Consensus 266 ~~li~~~~l~~mk~gailvNvarg~ivde~aL~~aL~~g~i 306 (600)
...+ ..+..+.++. ||.+.-|=- .++.+.+.+...++
T Consensus 81 ~~~l--~~l~~~~~~~-ivs~~nGi~-~~e~l~~~~~~~~v 117 (307)
T 3ego_A 81 QSVF--SSLERIGKTN-ILFLQNGMG-HIHDLKDWHVGHSI 117 (307)
T ss_dssp HHHH--HHTTSSCCCE-EEECCSSSH-HHHHHHTCCCSCEE
T ss_pred HHHH--HHhhcCCCCe-EEEecCCcc-HHHHHHHhCCCCcE
Confidence 4443 2334455677 888766642 24455544444444
|
| >3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B* | Back alignment and structure |
|---|
Probab=97.35 E-value=0.00019 Score=76.43 Aligned_cols=87 Identities=20% Similarity=0.160 Sum_probs=60.6
Q ss_pred CEEEEEecChhHHHHHHHhhc-CCCEEEEEC---CCCC-hhHH-HHcC------------C------c-c-cCHHHHhcc
Q 007512 198 KTLAVLGFGKVGSEVARRAKG-LGMHVIAHD---PYAP-ADRA-RAIG------------V------D-L-VSFDEAIAT 251 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~-~g~~V~~~d---~~~~-~~~a-~~~g------------~------~-~-~~l~ell~~ 251 (600)
++|+|||.|.||..+|..|.. .|.+|.+|| ++.. .+.+ .+.| . . . .++++.++.
T Consensus 3 mkI~ViGaG~~G~~~a~~La~~~G~~V~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (404)
T 3c7a_A 3 VKVCVCGGGNGAHTLSGLAASRDGVEVRVLTLFADEAERWTKALGADELTVIVNEKDGTQTEVKSRPKVITKDPEIAISG 82 (404)
T ss_dssp EEEEEECCSHHHHHHHHHHTTSTTEEEEEECCSTTHHHHHHHHHTTSCEEEEEECSSSCEEEEEECCSEEESCHHHHHTT
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCCEEEEEeCCCCcHHHHHHHHhhccceeeeecCCCccceeeccceEEeCCHHHHhCC
Confidence 489999999999999999976 599999999 4321 1221 1112 1 1 1 257788999
Q ss_pred CCEEEEecCCCccccccccHhHhccCCCceEEEEc
Q 007512 252 ADFISLHMPLTPATSKVLNDETFGKMKKGVRIINV 286 (600)
Q Consensus 252 aDvV~l~~Pl~~~t~~li~~~~l~~mk~gailvNv 286 (600)
||+|++++|.. ..+.++ +.....++++++|++.
T Consensus 83 aD~Vilav~~~-~~~~v~-~~l~~~l~~~~ivv~~ 115 (404)
T 3c7a_A 83 ADVVILTVPAF-AHEGYF-QAMAPYVQDSALIVGL 115 (404)
T ss_dssp CSEEEECSCGG-GHHHHH-HHHTTTCCTTCEEEET
T ss_pred CCEEEEeCchH-HHHHHH-HHHHhhCCCCcEEEEc
Confidence 99999999944 344443 2333457888999885
|
| >2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A* | Back alignment and structure |
|---|
Probab=97.33 E-value=0.00012 Score=65.36 Aligned_cols=68 Identities=16% Similarity=0.338 Sum_probs=48.0
Q ss_pred ccCCEEEEEecChhHHHHHHHhhcCCCEEEEECCCCC-hhHHHHcCCcc-----cC---HHHH-hccCCEEEEecCCC
Q 007512 195 LVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAP-ADRARAIGVDL-----VS---FDEA-IATADFISLHMPLT 262 (600)
Q Consensus 195 l~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~-~~~a~~~g~~~-----~~---l~el-l~~aDvV~l~~Pl~ 262 (600)
+.++++.|+|.|.+|+.+++.|...|++|+++|++.. .+...+.+... .+ ++++ +.++|+|+.++|..
T Consensus 4 ~~~~~v~I~G~G~iG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~d~vi~~~~~~ 81 (144)
T 2hmt_A 4 IKNKQFAVIGLGRFGGSIVKELHRMGHEVLAVDINEEKVNAYASYATHAVIANATEENELLSLGIRNFEYVIVAIGAN 81 (144)
T ss_dssp --CCSEEEECCSHHHHHHHHHHHHTTCCCEEEESCHHHHHTTTTTCSEEEECCTTCHHHHHTTTGGGCSEEEECCCSC
T ss_pred CcCCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhCCEEEEeCCCCHHHHHhcCCCCCCEEEECCCCc
Confidence 4578899999999999999999999999999998642 12222234321 12 2233 67899999999854
|
| >1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A* | Back alignment and structure |
|---|
Probab=97.32 E-value=0.0011 Score=70.16 Aligned_cols=112 Identities=23% Similarity=0.243 Sum_probs=82.8
Q ss_pred cceeccCCEEEEEecChhHHHHHHHhhcCCC-EEEEECCC----CCh----------hHHHHcCC--cccCHHHHhccCC
Q 007512 191 VGVSLVGKTLAVLGFGKVGSEVARRAKGLGM-HVIAHDPY----APA----------DRARAIGV--DLVSFDEAIATAD 253 (600)
Q Consensus 191 ~g~~l~gktiGIIGlG~IG~~vA~~l~~~g~-~V~~~d~~----~~~----------~~a~~~g~--~~~~l~ell~~aD 253 (600)
.|..+.+.+|.|+|.|..|..+|+.+.+.|. +|+.+|+. ... ..+.+.+. ...+|.+.++++|
T Consensus 186 ~g~~l~~~kVVv~GAGaAG~~iAkll~~~G~~~I~v~Dr~Gli~~~R~~~~L~~~k~~~A~~~~~~~~~~~L~eav~~AD 265 (388)
T 1vl6_A 186 TEKKIEEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRKGILNENDPETCLNEYHLEIARITNPERLSGDLETALEGAD 265 (388)
T ss_dssp HTCCTTTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEECCTTSGGGCSSHHHHHHHHTSCTTCCCSCHHHHHTTCS
T ss_pred hCCCCCCcEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCCcccCCCcccccCHHHHHHHHhhhccCchhhHHHHHccCC
Confidence 3568899999999999999999999999998 89999987 211 12222221 1347999999999
Q ss_pred EEEEecCCCccccccccHhHhccCCCceEEEEccCCcc-ccHHHHHHhHhcC-CceEEE
Q 007512 254 FISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGV-IDEEALVRALDSG-RVAQAA 310 (600)
Q Consensus 254 vV~l~~Pl~~~t~~li~~~~l~~mk~gailvNvarg~i-vde~aL~~aL~~g-~i~ga~ 310 (600)
+++-+.- -++++++.++.|+++++|+++++-.. +..++.+++ | .|.+.|
T Consensus 266 VlIG~Sa-----p~l~t~emVk~Ma~~pIIfalSNPt~E~~p~~a~~~---g~~i~atG 316 (388)
T 1vl6_A 266 FFIGVSR-----GNILKPEWIKKMSRKPVIFALANPVPEIDPELAREA---GAFIVATG 316 (388)
T ss_dssp EEEECSC-----SSCSCHHHHTTSCSSCEEEECCSSSCSSCHHHHHHT---TCSEEEES
T ss_pred EEEEeCC-----CCccCHHHHHhcCCCCEEEEcCCCCCCCCHHHHHHh---cCeEEEeC
Confidence 9987742 38899999999999999999996443 234444443 4 454444
|
| >2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6 | Back alignment and structure |
|---|
Probab=97.30 E-value=0.00036 Score=65.49 Aligned_cols=73 Identities=12% Similarity=0.135 Sum_probs=60.6
Q ss_pred ccEEEEEecCCCCChhhHHhhhhcCCccccceEeeeecCCCcEEEEEEeCCC--CcHHHHHHHhcCCCcceEEEe
Q 007512 526 GSIILCRQVDQPGMIGTVGSILGSENVNVSFMSVGRVAPRKHAVMAIGVDEQ--PRKETLKKIGDVPAIEEFVFL 598 (600)
Q Consensus 526 ~~~Liv~~~D~pG~Ia~V~~iL~~~~INIa~m~v~R~~~g~~al~~i~~D~~--~~~~~l~~l~~~~~v~~v~~i 598 (600)
.|.|-+...|+||++++|+++|+++|+||.++.+......+.+.+.+.++.. .-+.+.++|.++++|.+|..+
T Consensus 3 ~~~IsV~v~NrpGvLarIt~lfs~rg~NI~Sl~v~~t~d~~~sriti~V~~d~~~leqI~kqL~Kl~dV~~V~r~ 77 (164)
T 2f1f_A 3 RRILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTVGDEKVLEQIEKQLHKLVDVLRVSEL 77 (164)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHTTTCCCSEEEEEECSCSSEEEEEEEEESCHHHHHHHHHHHHHSTTEEEEEEG
T ss_pred EEEEEEEEeCCCcHHHHHHHHHHHCCCCeeeceeeecCCCCEEEEEEEEeccHHHHHHHHHHHcCCCCEEEEEEc
Confidence 3678888899999999999999999999999999876555678887777644 335788899999999988754
|
| >3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=97.28 E-value=0.00051 Score=69.70 Aligned_cols=96 Identities=10% Similarity=0.119 Sum_probs=66.0
Q ss_pred ceeccCCEEEEEecChhHHHHHHHhhcCCC-EEEEECCCCCh--hHHHHcC---CcccCHHHHh-ccCCEEEEecCCCcc
Q 007512 192 GVSLVGKTLAVLGFGKVGSEVARRAKGLGM-HVIAHDPYAPA--DRARAIG---VDLVSFDEAI-ATADFISLHMPLTPA 264 (600)
Q Consensus 192 g~~l~gktiGIIGlG~IG~~vA~~l~~~g~-~V~~~d~~~~~--~~a~~~g---~~~~~l~ell-~~aDvV~l~~Pl~~~ 264 (600)
+..+.||++.|+|.|.+|+.++..|...|. +|..+++.... +.+.+.+ +...+++++- .++|+|+.++|..-.
T Consensus 115 ~~~l~~k~~lvlGaGg~~~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~~~~~~~~~~~~l~~~~~DivInaTp~gm~ 194 (272)
T 3pwz_A 115 GEPLRNRRVLLLGAGGAVRGALLPFLQAGPSELVIANRDMAKALALRNELDHSRLRISRYEALEGQSFDIVVNATSASLT 194 (272)
T ss_dssp CCCCTTSEEEEECCSHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHCCTTEEEECSGGGTTCCCSEEEECSSGGGG
T ss_pred CCCccCCEEEEECccHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhccCCeeEeeHHHhcccCCCEEEECCCCCCC
Confidence 456889999999999999999999999996 99999987522 2223333 2334555544 789999999996421
Q ss_pred cc-ccccHhHhccCCCceEEEEccCCc
Q 007512 265 TS-KVLNDETFGKMKKGVRIINVARGG 290 (600)
Q Consensus 265 t~-~li~~~~l~~mk~gailvNvarg~ 290 (600)
.. -.+.. +.++++.+++|+.-.+
T Consensus 195 ~~~~~i~~---~~l~~~~~V~DlvY~P 218 (272)
T 3pwz_A 195 ADLPPLPA---DVLGEAALAYELAYGK 218 (272)
T ss_dssp TCCCCCCG---GGGTTCSEEEESSCSC
T ss_pred CCCCCCCH---HHhCcCCEEEEeecCC
Confidence 11 12222 2356777777776543
|
| >1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A* | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00022 Score=72.19 Aligned_cols=71 Identities=14% Similarity=0.075 Sum_probs=51.4
Q ss_pred eeccCCEEEEEecChhHHHHHHHhhcCCCEEEEECCCCCh--hHHHHcC----CcccCHHHHhc-cCCEEEEecCCCc
Q 007512 193 VSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPA--DRARAIG----VDLVSFDEAIA-TADFISLHMPLTP 263 (600)
Q Consensus 193 ~~l~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~~--~~a~~~g----~~~~~l~ell~-~aDvV~l~~Pl~~ 263 (600)
..+.|++++|+|.|.+|+.++..|...|.+|.++++.... +.+.+.+ +...+++++.+ ++|+|+.++|...
T Consensus 115 ~~~~~~~vlvlGaGg~g~a~a~~L~~~G~~v~v~~R~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~DivIn~t~~~~ 192 (272)
T 1p77_A 115 WLRPNQHVLILGAGGATKGVLLPLLQAQQNIVLANRTFSKTKELAERFQPYGNIQAVSMDSIPLQTYDLVINATSAGL 192 (272)
T ss_dssp CCCTTCEEEEECCSHHHHTTHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGSCEEEEEGGGCCCSCCSEEEECCCC--
T ss_pred CCcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHccccCCeEEeeHHHhccCCCCEEEECCCCCC
Confidence 4678999999999999999999999999999999987522 1222221 22234555434 8999999999653
|
| >2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A | Back alignment and structure |
|---|
Probab=97.22 E-value=0.0004 Score=71.78 Aligned_cols=101 Identities=15% Similarity=0.160 Sum_probs=64.2
Q ss_pred CCEEEEEecChhHHHHHHHhhcCCC-EEEEECCCCChhHHH--H-------c--C--Ccc-cCHHHHhccCCEEEEecCC
Q 007512 197 GKTLAVLGFGKVGSEVARRAKGLGM-HVIAHDPYAPADRAR--A-------I--G--VDL-VSFDEAIATADFISLHMPL 261 (600)
Q Consensus 197 gktiGIIGlG~IG~~vA~~l~~~g~-~V~~~d~~~~~~~a~--~-------~--g--~~~-~~l~ell~~aDvV~l~~Pl 261 (600)
.++|+|||.|.||..+|..+...|+ +|..||+........ . . . +.. .++ +.+++||+|+++++.
T Consensus 4 ~~kI~VIGaG~~G~~ia~~la~~g~~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~-~a~~~aDiVi~avg~ 82 (317)
T 2ewd_A 4 RRKIAVIGSGQIGGNIAYIVGKDNLADVVLFDIAEGIPQGKALDITHSMVMFGSTSKVIGTDDY-ADISGSDVVIITASI 82 (317)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEEESCG-GGGTTCSEEEECCCC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCCchHHHHHHHHHHhhhhhcCCCcEEEECCCH-HHhCCCCEEEEeCCC
Confidence 4689999999999999999987787 999999876322111 0 0 1 222 356 778999999999952
Q ss_pred Cccccccc-----------cHh---HhccCCCceEEEEccCCccccHHHHHH
Q 007512 262 TPATSKVL-----------NDE---TFGKMKKGVRIINVARGGVIDEEALVR 299 (600)
Q Consensus 262 ~~~t~~li-----------~~~---~l~~mk~gailvNvarg~ivde~aL~~ 299 (600)
.. ..++- -++ .+....|++++++++...-+....+.+
T Consensus 83 p~-~~g~~r~d~~~~~~~i~~~i~~~i~~~~~~~iii~~sNp~~~~~~~~~~ 133 (317)
T 2ewd_A 83 PG-RPKDDRSELLFGNARILDSVAEGVKKYCPNAFVICITNPLDVMVSHFQK 133 (317)
T ss_dssp SS-CCSSCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECCSSHHHHHHHHHH
T ss_pred CC-CCCCcHHHHHHhhHHHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHHH
Confidence 21 11110 011 122234689999987644333444444
|
| >4b4u_A Bifunctional protein fold; oxidoreductase; HET: NAP; 1.45A {Acinetobacter baumannii atcc 19606} PDB: 4b4v_A* 4b4w_A* | Back alignment and structure |
|---|
Probab=97.21 E-value=0.00087 Score=68.57 Aligned_cols=79 Identities=16% Similarity=0.250 Sum_probs=65.6
Q ss_pred cceeccCCEEEEEecCh-hHHHHHHHhhcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEecCCCccccccc
Q 007512 191 VGVSLVGKTLAVLGFGK-VGSEVARRAKGLGMHVIAHDPYAPADRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVL 269 (600)
Q Consensus 191 ~g~~l~gktiGIIGlG~-IG~~vA~~l~~~g~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Pl~~~t~~li 269 (600)
.+.++.||++.|||-+. +|+.+|..|...++.|..+..+. .+|.+.+++||+|+.++.. .+++
T Consensus 173 ~~i~l~Gk~vvViGRS~iVGkPla~LL~~~~ATVTi~Hs~T------------~dl~~~~~~ADIvV~A~G~----p~~i 236 (303)
T 4b4u_A 173 NNIEIAGKHAVVVGRSAILGKPMAMMLLQANATVTICHSRT------------QNLPELVKQADIIVGAVGK----AELI 236 (303)
T ss_dssp TTCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC------------SSHHHHHHTCSEEEECSCS----TTCB
T ss_pred HCCCCCCCEEEEEeccccccchHHHHHHhcCCEEEEecCCC------------CCHHHHhhcCCeEEeccCC----CCcc
Confidence 46799999999999876 59999999999999999887543 2578899999999999872 3567
Q ss_pred cHhHhccCCCceEEEEccC
Q 007512 270 NDETFGKMKKGVRIINVAR 288 (600)
Q Consensus 270 ~~~~l~~mk~gailvNvar 288 (600)
..++ .|+|+++||+|-
T Consensus 237 ~~d~---vk~GavVIDVGi 252 (303)
T 4b4u_A 237 QKDW---IKQGAVVVDAGF 252 (303)
T ss_dssp CGGG---SCTTCEEEECCC
T ss_pred cccc---ccCCCEEEEece
Confidence 6654 599999999984
|
| >3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum} | Back alignment and structure |
|---|
Probab=97.21 E-value=0.0004 Score=75.17 Aligned_cols=135 Identities=19% Similarity=0.194 Sum_probs=78.9
Q ss_pred CCEEEEEecChhHHHHHHHhhcCCCEEEEECCCCChhHHHHc--------------------C-Ccc-cCHHHHhccCCE
Q 007512 197 GKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPADRARAI--------------------G-VDL-VSFDEAIATADF 254 (600)
Q Consensus 197 gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~~~~a~~~--------------------g-~~~-~~l~ell~~aDv 254 (600)
-++|+|||+|.+|..+|..+...|++|++||.+...-..... | ... .+.++.++.||+
T Consensus 21 m~~IaViGlGYVGLp~A~~~A~~G~~V~g~Did~~kV~~ln~G~~pi~Epgl~ell~~~~~~g~l~~tt~~~~ai~~ad~ 100 (444)
T 3vtf_A 21 MASLSVLGLGYVGVVHAVGFALLGHRVVGYDVNPSIVERLRAGRPHIYEPGLEEALGRALSSGRLSFAESAEEAVAATDA 100 (444)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEECSSHHHHHHTSSE
T ss_pred CCEEEEEccCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHCCCCCCCCCCHHHHHHHHHHcCCeeEEcCHHHHHhcCCc
Confidence 468999999999999999999899999999976422111111 2 122 257788999999
Q ss_pred EEEecCCCcccc-cccc--------HhHhccCC---CceEEEEccCCccccHHHH-HHhHhcCCceEEEEe-ccCCCCCC
Q 007512 255 ISLHMPLTPATS-KVLN--------DETFGKMK---KGVRIINVARGGVIDEEAL-VRALDSGRVAQAALD-VFTEEPPP 320 (600)
Q Consensus 255 V~l~~Pl~~~t~-~li~--------~~~l~~mk---~gailvNvarg~ivde~aL-~~aL~~g~i~ga~lD-v~~~EP~~ 320 (600)
+++|+| ||... +-.| +..-..|+ +|.++|.-+.-.+=..+.+ ...+.+.. .|.-.+ +|.+|-+.
T Consensus 101 ~~I~Vp-TP~~~d~~~Dl~~v~~a~~~I~~~l~~~~~g~lVV~eSTVppGtte~~~~~~l~~~~-~~~~f~v~~~PErl~ 178 (444)
T 3vtf_A 101 TFIAVG-TPPAPDGSADLRYVEAAARAVGRGIRAKGRWHLVVVKSTVPPGTTEGLVARAVAEEA-GGVKFSVASNPEFLR 178 (444)
T ss_dssp EEECCC-CCBCTTSSBCCHHHHHHHHHHHHHHHHHCSCCEEEECSCCCTTTTTTHHHHHHHTTT-TTCCCEEEECCCCCC
T ss_pred eEEEec-CCCCCCCCCCcHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCCchHHHHHHHHHHHhC-CCCCceeecCccccc
Confidence 999999 44222 1111 11122243 6789999886444222222 22333321 111111 24456443
Q ss_pred CC---CccccCCcEEE
Q 007512 321 AD---SKLVQHERVTV 333 (600)
Q Consensus 321 ~~---~~L~~~~nvil 333 (600)
+. +.+...+++++
T Consensus 179 eG~a~~d~~~~~riVi 194 (444)
T 3vtf_A 179 EGSALEDFFKPDRIVI 194 (444)
T ss_dssp TTSHHHHHHSCSCEEE
T ss_pred CCccccccccCCcEEE
Confidence 33 24566677753
|
| >1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=97.18 E-value=0.00043 Score=71.20 Aligned_cols=64 Identities=19% Similarity=0.298 Sum_probs=47.6
Q ss_pred CEEEEEecChhHHHHHHHhhcCC--CEEEEECCCCCh-h-HHHHc---------CCcc--cCHHHHhccCCEEEEecCCC
Q 007512 198 KTLAVLGFGKVGSEVARRAKGLG--MHVIAHDPYAPA-D-RARAI---------GVDL--VSFDEAIATADFISLHMPLT 262 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~g--~~V~~~d~~~~~-~-~a~~~---------g~~~--~~l~ell~~aDvV~l~~Pl~ 262 (600)
++|+|||.|.||..+|..|...| .+|..||+.... + .+... .+.. .++ +.+++||+|++++|..
T Consensus 2 ~kI~VIGaG~~G~~la~~L~~~g~~~~V~l~d~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~-~~~~~aDvViiav~~~ 80 (309)
T 1hyh_A 2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVINDW-AALADADVVISTLGNI 80 (309)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEESCG-GGGTTCSEEEECCSCG
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHHHHhhhhhcCCCeEEEeCCH-HHhCCCCEEEEecCCc
Confidence 58999999999999999998667 699999987521 1 11111 1222 356 7789999999999953
|
| >1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A* | Back alignment and structure |
|---|
Probab=97.18 E-value=0.00076 Score=69.53 Aligned_cols=63 Identities=21% Similarity=0.297 Sum_probs=47.3
Q ss_pred CEEEEEecChhHHHHHHHhhc--CCCEEEEECCCCChhHHH----HcC---------Ccc-cCHHHHhccCCEEEEecCC
Q 007512 198 KTLAVLGFGKVGSEVARRAKG--LGMHVIAHDPYAPADRAR----AIG---------VDL-VSFDEAIATADFISLHMPL 261 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~--~g~~V~~~d~~~~~~~a~----~~g---------~~~-~~l~ell~~aDvV~l~~Pl 261 (600)
++|+|||.|.+|..+|..|.. +|.+|..||+........ ... +.. .++++ +++||+|++++|.
T Consensus 1 mkI~VIGaG~vG~~la~~la~~~~g~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~~~-l~~aDvViiav~~ 79 (310)
T 1guz_A 1 MKITVIGAGNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGSNDYAD-TANSDIVIITAGL 79 (310)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEESCGGG-GTTCSEEEECCSC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHhHHhhhhcccCCcEEEECCCHHH-HCCCCEEEEeCCC
Confidence 479999999999999999975 589999999876432221 111 112 35666 8999999999984
|
| >4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.16 E-value=0.00045 Score=71.46 Aligned_cols=65 Identities=23% Similarity=0.401 Sum_probs=52.7
Q ss_pred CEEEEEecChhHHHHHHHhhcC-CCEEE-EECCCCCh--hHHHHcCCcccCHHHHhc--cCCEEEEecCCC
Q 007512 198 KTLAVLGFGKVGSEVARRAKGL-GMHVI-AHDPYAPA--DRARAIGVDLVSFDEAIA--TADFISLHMPLT 262 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~-g~~V~-~~d~~~~~--~~a~~~g~~~~~l~ell~--~aDvV~l~~Pl~ 262 (600)
.+|||||+|.||+..++.++.. ++++. ++|++... ..+...|+.+.+++++++ ++|+|++|+|..
T Consensus 4 ~~vgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~tp~~ 74 (331)
T 4hkt_A 4 VRFGLLGAGRIGKVHAKAVSGNADARLVAVADAFPAAAEAIAGAYGCEVRTIDAIEAAADIDAVVICTPTD 74 (331)
T ss_dssp EEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTCEECCHHHHHHCTTCCEEEECSCGG
T ss_pred eEEEEECCCHHHHHHHHHHhhCCCcEEEEEECCCHHHHHHHHHHhCCCcCCHHHHhcCCCCCEEEEeCCch
Confidence 4899999999999999999876 78887 58987632 334556777668999998 899999999943
|
| >2pc6_A Probable acetolactate synthase isozyme III (small; regulatory subunit, structural genomi protein structure initiative; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} SCOP: d.58.18.6 d.58.18.6 | Back alignment and structure |
|---|
Probab=97.14 E-value=0.00045 Score=64.84 Aligned_cols=73 Identities=14% Similarity=0.212 Sum_probs=60.4
Q ss_pred ccEEEEEecCCCCChhhHHhhhhcCCccccceEeeeecCCCcEEEEEEeCCC--CcHHHHHHHhcCCCcceEEEe
Q 007512 526 GSIILCRQVDQPGMIGTVGSILGSENVNVSFMSVGRVAPRKHAVMAIGVDEQ--PRKETLKKIGDVPAIEEFVFL 598 (600)
Q Consensus 526 ~~~Liv~~~D~pG~Ia~V~~iL~~~~INIa~m~v~R~~~g~~al~~i~~D~~--~~~~~l~~l~~~~~v~~v~~i 598 (600)
.|.|-+...|+||++++|++++++.|+||.++.+......+.+.|.|.++.. .-+.+.++|.++++|.+|..+
T Consensus 4 ~~~IsV~veNrpGvL~rI~~lfs~rg~NI~Sl~v~~t~d~g~sritivV~~d~~~leql~kQL~Kl~dV~~V~~~ 78 (165)
T 2pc6_A 4 RHIISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTNGPDEIVEQITKQLNKLIEVVKLIDL 78 (165)
T ss_dssp EEEEEEEEECSTTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEEEEECHHHHHHHHHHHHHSTTEEEEEEG
T ss_pred EEEEEEEEeCCCcHHHHHHHHHHHCCCcEEEEEEEecCCCCEEEEEEEEeccHHHHHHHHHHhcCCCCEEEEEEc
Confidence 3678888899999999999999999999999999876666777776666533 445788899999999988754
|
| >1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=97.11 E-value=0.00088 Score=69.34 Aligned_cols=65 Identities=15% Similarity=0.168 Sum_probs=47.0
Q ss_pred CEEEEEecChhHHHHHHHhhcCCC--EEEEECCCCCh-hH-HH--Hc------CC--cccCHHHHhccCCEEEEecCCCc
Q 007512 198 KTLAVLGFGKVGSEVARRAKGLGM--HVIAHDPYAPA-DR-AR--AI------GV--DLVSFDEAIATADFISLHMPLTP 263 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~g~--~V~~~d~~~~~-~~-a~--~~------g~--~~~~l~ell~~aDvV~l~~Pl~~ 263 (600)
++|+|||.|.||..+|..|...|. +|..||+.... +. +. .. .. ...+ .+.+++||+|++++|...
T Consensus 1 mkI~VIGaG~~G~~la~~l~~~g~~~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~i~~~d-~~~~~~aDvViiav~~~~ 79 (319)
T 1a5z_A 1 MKIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYAGD-YADLKGSDVVIVAAGVPQ 79 (319)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEECC-GGGGTTCSEEEECCCCCC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHHHHHhhhhhcCCcEEEeCC-HHHhCCCCEEEEccCCCC
Confidence 479999999999999999987787 99999987521 11 11 11 11 1224 356799999999999543
|
| >1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5 | Back alignment and structure |
|---|
Probab=97.08 E-value=0.0013 Score=67.59 Aligned_cols=102 Identities=16% Similarity=0.165 Sum_probs=65.2
Q ss_pred CEEEEEecChhHHH-HHHHhhcC-CCEEE-EECCCCCh--hHHHHcCCcc-cCHHHHhccCCEEEEecCCCccccccccH
Q 007512 198 KTLAVLGFGKVGSE-VARRAKGL-GMHVI-AHDPYAPA--DRARAIGVDL-VSFDEAIATADFISLHMPLTPATSKVLND 271 (600)
Q Consensus 198 ktiGIIGlG~IG~~-vA~~l~~~-g~~V~-~~d~~~~~--~~a~~~g~~~-~~l~ell~~aDvV~l~~Pl~~~t~~li~~ 271 (600)
.+|||||+|.||+. +++.++.. ++++. ++|++... ..+...|+.. .+++++..++|+|++|+|.... . +
T Consensus 6 ~~vgiiG~G~~g~~~~~~~l~~~~~~~lvav~d~~~~~~~~~~~~~g~~~~~~~~~l~~~~D~V~i~tp~~~h-~----~ 80 (319)
T 1tlt_A 6 LRIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICESWRIPYADSLSSLAASCDAVFVHSSTASH-F----D 80 (319)
T ss_dssp EEEEEECCSTHHHHTHHHHHHSCSSEEEEEEECSSCTTHHHHHHHHTCCBCSSHHHHHTTCSEEEECSCTTHH-H----H
T ss_pred ceEEEECCCHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHcCCCccCcHHHhhcCCCEEEEeCCchhH-H----H
Confidence 48999999999997 88888764 78876 78987732 2344557653 3677776789999999994421 1 1
Q ss_pred hHhccCCCce-EEEEc-cCCccccHHHHHHhHhcC
Q 007512 272 ETFGKMKKGV-RIINV-ARGGVIDEEALVRALDSG 304 (600)
Q Consensus 272 ~~l~~mk~ga-ilvNv-arg~ivde~aL~~aL~~g 304 (600)
.....++.|. +++.- .-..+-+.+.|.++.++.
T Consensus 81 ~~~~al~~G~~v~~eKP~~~~~~~~~~l~~~a~~~ 115 (319)
T 1tlt_A 81 VVSTLLNAGVHVCVDKPLAENLRDAERLVELAARK 115 (319)
T ss_dssp HHHHHHHTTCEEEEESSSCSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHc
Confidence 1222345554 55542 122333455666666554
|
| >3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=97.08 E-value=0.00069 Score=69.31 Aligned_cols=65 Identities=14% Similarity=0.203 Sum_probs=51.4
Q ss_pred CCEEEEEecChhHHH-HHHHhhcC-CCEEE-EECCCCCh--hHHHHcCCc-ccCHHHHhccCCEEEEecCC
Q 007512 197 GKTLAVLGFGKVGSE-VARRAKGL-GMHVI-AHDPYAPA--DRARAIGVD-LVSFDEAIATADFISLHMPL 261 (600)
Q Consensus 197 gktiGIIGlG~IG~~-vA~~l~~~-g~~V~-~~d~~~~~--~~a~~~g~~-~~~l~ell~~aDvV~l~~Pl 261 (600)
-.+|||||+|.||+. .++.++.. ++++. ++|++... ..+.+.|+. +.++++++.++|+|++|+|.
T Consensus 6 ~~~igiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~~~~~~~~~~~ll~~~D~V~i~tp~ 76 (308)
T 3uuw_A 6 NIKMGMIGLGSIAQKAYLPILTKSERFEFVGAFTPNKVKREKICSDYRIMPFDSIESLAKKCDCIFLHSST 76 (308)
T ss_dssp CCEEEEECCSHHHHHHTHHHHTSCSSSEEEEEECSCHHHHHHHHHHHTCCBCSCHHHHHTTCSEEEECCCG
T ss_pred cCcEEEEecCHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHcCCCCcCCHHHHHhcCCEEEEeCCc
Confidence 368999999999996 88888864 78887 58987632 234456765 45899999999999999993
|
| >3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A* | Back alignment and structure |
|---|
Probab=97.08 E-value=0.0031 Score=72.51 Aligned_cols=174 Identities=17% Similarity=0.141 Sum_probs=105.2
Q ss_pred CEEEEEecChhHHHHHHHhhcCCCEEEEECCCCC-hhHHHH---------------cCC-------cccCHHHHhccCCE
Q 007512 198 KTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAP-ADRARA---------------IGV-------DLVSFDEAIATADF 254 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~-~~~a~~---------------~g~-------~~~~l~ell~~aDv 254 (600)
++|||||.|.||+.+|..+...|++|+.+|+... .+.+.+ ... ...+-.+.+++||+
T Consensus 317 ~~v~ViGaG~MG~gIA~~~a~aG~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aDl 396 (742)
T 3zwc_A 317 SSVGVLGLGTMGRGIAISFARVGISVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRFSSSTKELSTVDL 396 (742)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCCEEEESCGGGGGSCSE
T ss_pred cEEEEEcccHHHHHHHHHHHhCCCchhcccchHhhhhhHHHHHHHHHHHHHHhccccchhhhhhhhcccCcHHHHhhCCE
Confidence 6899999999999999999999999999998752 111110 000 11222345889999
Q ss_pred EEEecCCCccccccccHhHhccCCCceEEEEccCCccccHHHHHHhHhcCCceEEEEeccCCCCCCCCCccccCCcEEEc
Q 007512 255 ISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVIDEEALVRALDSGRVAQAALDVFTEEPPPADSKLVQHERVTVT 334 (600)
Q Consensus 255 V~l~~Pl~~~t~~li~~~~l~~mk~gailvNvarg~ivde~aL~~aL~~g~i~ga~lDv~~~EP~~~~~~L~~~~nvilT 334 (600)
|+=++|-.-+.++-+-++.=+.++++++|-...++= ....|.++++. +=.-.|++-|.+-| .-||.| ||-+
T Consensus 397 VIEAV~E~l~iK~~vf~~le~~~~~~aIlASNTSsl--~i~~ia~~~~~-p~r~ig~HFfnP~~---~m~LVE---vi~g 467 (742)
T 3zwc_A 397 VVEAVFEDMNLKKKVFAELSALCKPGAFLCTNTSAL--NVDDIASSTDR-PQLVIGTHFFSPAH---VMRLLE---VIPS 467 (742)
T ss_dssp EEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSSS--CHHHHHTTSSC-GGGEEEEECCSSTT---TCCEEE---EEEC
T ss_pred EEEeccccHHHHHHHHHHHhhcCCCCceEEecCCcC--ChHHHHhhcCC-ccccccccccCCCC---CCceEE---EecC
Confidence 999999887776655555555689999887655543 34455555433 22237777775432 357775 6666
Q ss_pred CCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCccccCCCCChhhhhcc-cchHHHHHHH
Q 007512 335 PHLGASTMEAQEGVAIEIAEAVVGALKGELAATAVNAPMVPAEVLTEL-KPFVELAEKL 392 (600)
Q Consensus 335 PH~~~~t~ea~~~~~~~~~~~l~~~l~g~~~~~~vn~~~i~~~~~~~~-~p~~~la~~l 392 (600)
|+. +.|+. +.+.++.+...-..++- ...+--.++.+ .||+..|.+|
T Consensus 468 ~~T---s~e~~--------~~~~~~~~~lgK~pV~v-kd~pGFi~NRi~~~~~~ea~~l 514 (742)
T 3zwc_A 468 RYS---SPTTI--------ATVMSLSKKIGKIGVVV-GNCYGFVGNRMLAPYYNQGFFL 514 (742)
T ss_dssp SSC---CHHHH--------HHHHHHHHHTTCEEEEC-CCSTTTTHHHHHHHHHHHHHHH
T ss_pred CCC---CHHHH--------HHHHHHHHHhCCCCccc-CCCCCccHHHHhhHHHHHHHHH
Confidence 654 23332 33333332222111211 22334455554 4888777666
|
| >1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=97.08 E-value=0.00049 Score=70.06 Aligned_cols=95 Identities=15% Similarity=0.207 Sum_probs=65.7
Q ss_pred eeccCCEEEEEecChhHHHHHHHhhcCCCEEEEECCCCCh--hHHHHcC----------CcccCHHHHhccCCEEEEecC
Q 007512 193 VSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPA--DRARAIG----------VDLVSFDEAIATADFISLHMP 260 (600)
Q Consensus 193 ~~l~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~~--~~a~~~g----------~~~~~l~ell~~aDvV~l~~P 260 (600)
..+.||++.|+|.|.||+++|+.|...| +|+.+|+.... +.+.+.+ +...++.+.+.++|+|+.++|
T Consensus 124 ~~l~~k~vlV~GaGgiG~aia~~L~~~G-~V~v~~r~~~~~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~~DilVn~ag 202 (287)
T 1nvt_A 124 GRVKDKNIVIYGAGGAARAVAFELAKDN-NIIIANRTVEKAEALAKEIAEKLNKKFGEEVKFSGLDVDLDGVDIIINATP 202 (287)
T ss_dssp CCCCSCEEEEECCSHHHHHHHHHHTSSS-EEEEECSSHHHHHHHHHHHHHHHTCCHHHHEEEECTTCCCTTCCEEEECSC
T ss_pred CCcCCCEEEEECchHHHHHHHHHHHHCC-CEEEEECCHHHHHHHHHHHhhhcccccceeEEEeeHHHhhCCCCEEEECCC
Confidence 4678999999999999999999999999 99999986521 1111111 122233566788999999999
Q ss_pred CCcccc---ccccHhHhccCCCceEEEEccCCc
Q 007512 261 LTPATS---KVLNDETFGKMKKGVRIINVARGG 290 (600)
Q Consensus 261 l~~~t~---~li~~~~l~~mk~gailvNvarg~ 290 (600)
...... ..+. ..+.++++.+++|+.-..
T Consensus 203 ~~~~~~~~~~~~~--~~~~l~~~~~v~Dv~y~p 233 (287)
T 1nvt_A 203 IGMYPNIDVEPIV--KAEKLREDMVVMDLIYNP 233 (287)
T ss_dssp TTCTTCCSSCCSS--CSTTCCSSSEEEECCCSS
T ss_pred CCCCCCCCCCCCC--CHHHcCCCCEEEEeeeCC
Confidence 653210 0120 134578899999998643
|
| >1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA family oxidoreductase; 2.65A {Vibrio cholerae} SCOP: c.2.1.3 d.81.1.5 | Back alignment and structure |
|---|
Probab=97.07 E-value=0.0011 Score=68.45 Aligned_cols=63 Identities=11% Similarity=0.229 Sum_probs=48.1
Q ss_pred CEEEEEecChhHHH-HHHHhhcC-CCEEEEECCCCCh--hHHHHcCCc--ccCHHHHh-ccCCEEEEecC
Q 007512 198 KTLAVLGFGKVGSE-VARRAKGL-GMHVIAHDPYAPA--DRARAIGVD--LVSFDEAI-ATADFISLHMP 260 (600)
Q Consensus 198 ktiGIIGlG~IG~~-vA~~l~~~-g~~V~~~d~~~~~--~~a~~~g~~--~~~l~ell-~~aDvV~l~~P 260 (600)
.+|||||+|.||+. +++.++.. ++++.++|++... ..+.+.|+. +.+..+++ +++|+|++|+|
T Consensus 3 ~~igiIG~G~ig~~~~~~~l~~~~~~~l~v~d~~~~~~~~~a~~~g~~~~~~~~~~~l~~~~D~V~i~tp 72 (323)
T 1xea_A 3 LKIAMIGLGDIAQKAYLPVLAQWPDIELVLCTRNPKVLGTLATRYRVSATCTDYRDVLQYGVDAVMIHAA 72 (323)
T ss_dssp EEEEEECCCHHHHHTHHHHHTTSTTEEEEEECSCHHHHHHHHHHTTCCCCCSSTTGGGGGCCSEEEECSC
T ss_pred cEEEEECCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHcCCCccccCHHHHhhcCCCEEEEECC
Confidence 37999999999984 99988765 7888899987632 234556765 44555666 78999999999
|
| >1pg5_A Aspartate carbamoyltransferase; 2.60A {Sulfolobus acidocaldarius} SCOP: c.78.1.1 c.78.1.1 PDB: 2be9_A* | Back alignment and structure |
|---|
Probab=97.07 E-value=0.0045 Score=63.52 Aligned_cols=126 Identities=15% Similarity=0.121 Sum_probs=87.3
Q ss_pred HhCCceeecC-CCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCccccccccceeccCCEEEEEec---ChhHHHHHHHh
Q 007512 141 TEFGCLVVNA-PTANTVAAAEHGIALLAAMARNVAQADASVKAGKWQRNKYVGVSLVGKTLAVLGF---GKVGSEVARRA 216 (600)
Q Consensus 141 ~~~GI~V~n~-p~~~~~~vAE~~l~lll~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktiGIIGl---G~IG~~vA~~l 216 (600)
...+|+|+|+ -|...-++ .+++=++.+.++ .| .+.|.+|++||= |++..+++..+
T Consensus 113 ~~~~vPVINaG~g~~~HPt--Q~LaDl~Ti~e~------------------~g-~l~gl~va~vGD~~~~rva~Sl~~~~ 171 (299)
T 1pg5_A 113 EISDIPVINAGDGKHEHPT--QAVIDIYTINKH------------------FN-TIDGLVFALLGDLKYARTVNSLLRIL 171 (299)
T ss_dssp HHCSSCEEEEEETTTBCHH--HHHHHHHHHHHH------------------HS-CSTTCEEEEEECCSSCHHHHHHHHHG
T ss_pred HhCCCCEEeCCCCCCcCcH--HHHHHHHHHHHH------------------hC-CcCCcEEEEECCCCCCchHHHHHHHH
Confidence 3457899998 55554443 334444444431 12 478999999998 59999999999
Q ss_pred hcC-CCEEEEECCCC---ChhHHHHcCCcc---cCHHHHhccCCEEEEecCCCccc-----------cccccHhHhccCC
Q 007512 217 KGL-GMHVIAHDPYA---PADRARAIGVDL---VSFDEAIATADFISLHMPLTPAT-----------SKVLNDETFGKMK 278 (600)
Q Consensus 217 ~~~-g~~V~~~d~~~---~~~~a~~~g~~~---~~l~ell~~aDvV~l~~Pl~~~t-----------~~li~~~~l~~mk 278 (600)
..+ |++|....|.. +.....+.|... .++++++++||+|..-.=..+.. ..-++.+.++.+|
T Consensus 172 ~~~~g~~v~~~~P~~~~~~~~~~~~~g~~~~~~~d~~eav~~aDvvyt~~~q~er~~~~~~~~~~~~~y~v~~~~l~~a~ 251 (299)
T 1pg5_A 172 TRFRPKLVYLISPQLLRARKEILDELNYPVKEVENPFEVINEVDVLYVTRIQKERFVDEMEYEKIKGSYIVSLDLANKMK 251 (299)
T ss_dssp GGSCCSEEEEECCGGGCCCHHHHTTCCSCEEEESCGGGTGGGCSEEEEECCCSTTSSCHHHHHHHGGGGSBCHHHHHTSC
T ss_pred HhCCCCEEEEECCchhcCCHHHHHHcCCeEEEeCCHHHHhcCCCEEEeCCcccccccCHHHHHHhhcCcccCHHHHHhcC
Confidence 999 99999998854 222234556542 47999999999998865432110 2446777788888
Q ss_pred CceEEEEcc
Q 007512 279 KGVRIINVA 287 (600)
Q Consensus 279 ~gailvNva 287 (600)
|+++|.-|.
T Consensus 252 ~~ai~mH~l 260 (299)
T 1pg5_A 252 KDSIILHPL 260 (299)
T ss_dssp TTCEEECCS
T ss_pred CCCEEECCC
Confidence 888888876
|
| >3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2} | Back alignment and structure |
|---|
Probab=97.03 E-value=0.00076 Score=70.45 Aligned_cols=65 Identities=8% Similarity=0.173 Sum_probs=51.6
Q ss_pred CEEEEEecChhHHHHHHHhhcC-CCEEE-EECCCCCh--hHHHHcCCc-ccCHHHHh--ccCCEEEEecCCC
Q 007512 198 KTLAVLGFGKVGSEVARRAKGL-GMHVI-AHDPYAPA--DRARAIGVD-LVSFDEAI--ATADFISLHMPLT 262 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~-g~~V~-~~d~~~~~--~~a~~~g~~-~~~l~ell--~~aDvV~l~~Pl~ 262 (600)
.+|||||+|.||+..++.++.. ++++. ++|++... ..+...|+. +.++++++ .++|+|++|+|..
T Consensus 6 ~~vgiiG~G~~g~~~~~~l~~~~~~~lvav~d~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~D~V~i~tp~~ 77 (354)
T 3db2_A 6 VGVAAIGLGRWAYVMADAYTKSEKLKLVTCYSRTEDKREKFGKRYNCAGDATMEALLAREDVEMVIITVPND 77 (354)
T ss_dssp EEEEEECCSHHHHHHHHHHTTCSSEEEEEEECSSHHHHHHHHHHHTCCCCSSHHHHHHCSSCCEEEECSCTT
T ss_pred ceEEEEccCHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHcCCCCcCCHHHHhcCCCCCEEEEeCChH
Confidence 4799999999999999999977 88876 57887632 234456775 45899999 6799999999943
|
| >3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=97.02 E-value=0.00069 Score=70.44 Aligned_cols=64 Identities=27% Similarity=0.402 Sum_probs=50.9
Q ss_pred CEEEEEecChhHHHHHHHhhcC-CCEEE-EECCCCCh--hHHHHcCCc-ccCHHHHhc--cCCEEEEecCC
Q 007512 198 KTLAVLGFGKVGSEVARRAKGL-GMHVI-AHDPYAPA--DRARAIGVD-LVSFDEAIA--TADFISLHMPL 261 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~-g~~V~-~~d~~~~~--~~a~~~g~~-~~~l~ell~--~aDvV~l~~Pl 261 (600)
.+|||||+|.||+..++.++.. ++++. ++|++... ..+.+.|+. +.++++++. ++|+|++|+|.
T Consensus 5 ~rvgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~g~~~~~~~~~~l~~~~~D~V~i~tp~ 75 (344)
T 3euw_A 5 LRIALFGAGRIGHVHAANIAANPDLELVVIADPFIEGAQRLAEANGAEAVASPDEVFARDDIDGIVIGSPT 75 (344)
T ss_dssp EEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHTTTCEEESSHHHHTTCSCCCEEEECSCG
T ss_pred eEEEEECCcHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHcCCceeCCHHHHhcCCCCCEEEEeCCc
Confidence 4799999999999999999876 78877 58887632 234455665 358999998 89999999994
|
| >3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A | Back alignment and structure |
|---|
Probab=97.02 E-value=0.00075 Score=68.85 Aligned_cols=94 Identities=18% Similarity=0.160 Sum_probs=65.1
Q ss_pred eccCCEEEEEecChhHHHHHHHhhcCCC-EEEEECCCCChh--HHHHc-----CCc-----ccCHHHHhccCCEEEEecC
Q 007512 194 SLVGKTLAVLGFGKVGSEVARRAKGLGM-HVIAHDPYAPAD--RARAI-----GVD-----LVSFDEAIATADFISLHMP 260 (600)
Q Consensus 194 ~l~gktiGIIGlG~IG~~vA~~l~~~g~-~V~~~d~~~~~~--~a~~~-----g~~-----~~~l~ell~~aDvV~l~~P 260 (600)
.+.||++.|+|.|.+|+.++..|...|. +|..+++..... .+.+. ++. ..++++.++++|+|+.++|
T Consensus 124 ~l~~k~vlVlGaGG~g~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~~~~~~~~i~~~~~~~l~~~l~~~DiVInaTp 203 (283)
T 3jyo_A 124 NAKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVGREAVVGVDARGIEDVIAAADGVVNATP 203 (283)
T ss_dssp TCCCSEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHHTSCCEEEECSTTHHHHHHHSSEEEECSS
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhhcCCceEEEcCHHHHHHHHhcCCEEEECCC
Confidence 5789999999999999999999999998 799999875321 12221 111 1267788899999999999
Q ss_pred CCcccc--ccccHhHhccCCCceEEEEccCCc
Q 007512 261 LTPATS--KVLNDETFGKMKKGVRIINVARGG 290 (600)
Q Consensus 261 l~~~t~--~li~~~~l~~mk~gailvNvarg~ 290 (600)
..-... -.+. ...++++.+++|+.-.+
T Consensus 204 ~Gm~~~~~~pi~---~~~l~~~~~v~DlvY~P 232 (283)
T 3jyo_A 204 MGMPAHPGTAFD---VSCLTKDHWVGDVVYMP 232 (283)
T ss_dssp TTSTTSCSCSSC---GGGCCTTCEEEECCCSS
T ss_pred CCCCCCCCCCCC---HHHhCCCCEEEEecCCC
Confidence 642111 1122 23456777777776543
|
| >1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7 | Back alignment and structure |
|---|
Probab=97.01 E-value=0.00074 Score=56.24 Aligned_cols=62 Identities=18% Similarity=0.150 Sum_probs=48.0
Q ss_pred cEEEEEecCCCCChhhHHhhhhcCCccccceEeeeecCCCcEEEEEEeC--C-CCcHHHHHHHhcCC
Q 007512 527 SIILCRQVDQPGMIGTVGSILGSENVNVSFMSVGRVAPRKHAVMAIGVD--E-QPRKETLKKIGDVP 590 (600)
Q Consensus 527 ~~Liv~~~D~pG~Ia~V~~iL~~~~INIa~m~v~R~~~g~~al~~i~~D--~-~~~~~~l~~l~~~~ 590 (600)
..|.+..+|+||+++.|+++|+++|+||.+++..+.. +...+.+.++ + .--+++.++|+++.
T Consensus 6 ~~l~v~~~DrpGila~vt~~la~~~~NI~~i~~~~~~--~~~~~~i~v~~~~~~~l~~l~~~L~~~~ 70 (91)
T 1zpv_A 6 AIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVLD--EYFTMMAVVSSDEKQDFTYLRNEFEAFG 70 (91)
T ss_dssp EEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEEET--TEEEEEEEEEESSCCCHHHHHHHHHHHH
T ss_pred EEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEeEEEc--CEEEEEEEEEeCCCCCHHHHHHHHHHHH
Confidence 4567788999999999999999999999999998764 5666766663 3 22346777777654
|
| >2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens} | Back alignment and structure |
|---|
Probab=97.00 E-value=0.0011 Score=68.30 Aligned_cols=63 Identities=16% Similarity=0.223 Sum_probs=48.6
Q ss_pred EEEEEecChhHHHH-HHHhhcCCCEEE-EECCCCCh--hHHHHcCCc--ccCHHHHhc--cCCEEEEecCC
Q 007512 199 TLAVLGFGKVGSEV-ARRAKGLGMHVI-AHDPYAPA--DRARAIGVD--LVSFDEAIA--TADFISLHMPL 261 (600)
Q Consensus 199 tiGIIGlG~IG~~v-A~~l~~~g~~V~-~~d~~~~~--~~a~~~g~~--~~~l~ell~--~aDvV~l~~Pl 261 (600)
+|||||+|.||+.+ ++.++..+++++ ++|++... ..+.+.|+. +.+++++++ ++|+|++++|.
T Consensus 2 ~vgiiG~G~~g~~~~~~~l~~~~~~~vav~d~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~D~V~i~tp~ 72 (332)
T 2glx_A 2 RWGLIGASTIAREWVIGAIRATGGEVVSMMSTSAERGAAYATENGIGKSVTSVEELVGDPDVDAVYVSTTN 72 (332)
T ss_dssp EEEEESCCHHHHHTHHHHHHHTTCEEEEEECSCHHHHHHHHHHTTCSCCBSCHHHHHTCTTCCEEEECSCG
T ss_pred eEEEEcccHHHHHhhhHHhhcCCCeEEEEECCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEeCCh
Confidence 79999999999998 777766778876 57887622 234556763 458999987 59999999993
|
| >3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=97.00 E-value=0.0014 Score=66.77 Aligned_cols=93 Identities=18% Similarity=0.243 Sum_probs=62.1
Q ss_pred ceeccCCEEEEEecChhHHHHHHHhhcCCC-EEEEECCCCChhHHHHc--CCcccCHHHH--hccCCEEEEecCCC--cc
Q 007512 192 GVSLVGKTLAVLGFGKVGSEVARRAKGLGM-HVIAHDPYAPADRARAI--GVDLVSFDEA--IATADFISLHMPLT--PA 264 (600)
Q Consensus 192 g~~l~gktiGIIGlG~IG~~vA~~l~~~g~-~V~~~d~~~~~~~a~~~--g~~~~~l~el--l~~aDvV~l~~Pl~--~~ 264 (600)
+..+.|+++.|+|.|.+|+.++..|...|. +|..+++.. ++++++ .+...+++++ + ++|+|+.++|.. +.
T Consensus 117 ~~~~~~k~vlvlGaGGaaraia~~L~~~G~~~v~v~nRt~--~ka~~La~~~~~~~~~~l~~l-~~DivInaTp~Gm~~~ 193 (282)
T 3fbt_A 117 RVEIKNNICVVLGSGGAARAVLQYLKDNFAKDIYVVTRNP--EKTSEIYGEFKVISYDELSNL-KGDVIINCTPKGMYPK 193 (282)
T ss_dssp TCCCTTSEEEEECSSTTHHHHHHHHHHTTCSEEEEEESCH--HHHHHHCTTSEEEEHHHHTTC-CCSEEEECSSTTSTTS
T ss_pred CCCccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCH--HHHHHHHHhcCcccHHHHHhc-cCCEEEECCccCccCC
Confidence 456789999999999999999999999998 999998764 333332 2222233322 4 899999999963 21
Q ss_pred cc-ccccHhHhccCCCceEEEEccCCc
Q 007512 265 TS-KVLNDETFGKMKKGVRIINVARGG 290 (600)
Q Consensus 265 t~-~li~~~~l~~mk~gailvNvarg~ 290 (600)
.. -.++.+. ++++.+++|+.-.+
T Consensus 194 ~~~~pi~~~~---l~~~~~v~DlvY~P 217 (282)
T 3fbt_A 194 EGESPVDKEV---VAKFSSAVDLIYNP 217 (282)
T ss_dssp TTCCSSCHHH---HTTCSEEEESCCSS
T ss_pred CccCCCCHHH---cCCCCEEEEEeeCC
Confidence 11 1133332 45667777776433
|
| >3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A* | Back alignment and structure |
|---|
Probab=97.00 E-value=0.00067 Score=70.89 Aligned_cols=63 Identities=21% Similarity=0.292 Sum_probs=50.7
Q ss_pred CEEEEEecChhHHHHHHHhhcC--CCEEE-EECCCCCh--hHHHHcCCcc-cCHHHHhc--cCCEEEEecC
Q 007512 198 KTLAVLGFGKVGSEVARRAKGL--GMHVI-AHDPYAPA--DRARAIGVDL-VSFDEAIA--TADFISLHMP 260 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~--g~~V~-~~d~~~~~--~~a~~~g~~~-~~l~ell~--~aDvV~l~~P 260 (600)
.+|||||+|.||+..++.++.. +++++ ++|++... ..+.+.|+.. .+++++++ ++|+|++|+|
T Consensus 14 ~rvgiiG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp 84 (354)
T 3q2i_A 14 IRFALVGCGRIANNHFGALEKHADRAELIDVCDIDPAALKAAVERTGARGHASLTDMLAQTDADIVILTTP 84 (354)
T ss_dssp EEEEEECCSTTHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHHCCEEESCHHHHHHHCCCSEEEECSC
T ss_pred ceEEEEcCcHHHHHHHHHHHhCCCCeEEEEEEcCCHHHHHHHHHHcCCceeCCHHHHhcCCCCCEEEECCC
Confidence 5899999999999999999876 78876 68887632 2345567753 48999997 7999999999
|
| >3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=96.98 E-value=0.00086 Score=69.75 Aligned_cols=64 Identities=19% Similarity=0.279 Sum_probs=51.1
Q ss_pred CEEEEEecChhHHHHHHHhhcC-CCEEE-EECCCCCh--hHHHHcCCc--ccCHHHHhc--cCCEEEEecCC
Q 007512 198 KTLAVLGFGKVGSEVARRAKGL-GMHVI-AHDPYAPA--DRARAIGVD--LVSFDEAIA--TADFISLHMPL 261 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~-g~~V~-~~d~~~~~--~~a~~~g~~--~~~l~ell~--~aDvV~l~~Pl 261 (600)
.+|||||+|.||+..++.++.. ++++. ++|++... ..+...|+. +.+++++++ ++|+|++|+|.
T Consensus 3 ~rvgiIG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~ 74 (344)
T 3ezy_A 3 LRIGVIGLGRIGTIHAENLKMIDDAILYAISDVREDRLREMKEKLGVEKAYKDPHELIEDPNVDAVLVCSST 74 (344)
T ss_dssp EEEEEECCSHHHHHHHHHGGGSTTEEEEEEECSCHHHHHHHHHHHTCSEEESSHHHHHHCTTCCEEEECSCG
T ss_pred eEEEEEcCCHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHhCCCceeCCHHHHhcCCCCCEEEEcCCC
Confidence 4799999999999999999875 78887 47987622 334556764 458999998 89999999994
|
| >2ef0_A Ornithine carbamoyltransferase; TTHA1199, thermus thermophil structural genomics, NPPSFA; 2.00A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.95 E-value=0.009 Score=61.32 Aligned_cols=132 Identities=18% Similarity=0.128 Sum_probs=90.3
Q ss_pred hCCceeecCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCccccccccceeccCCEEEEEec-ChhHHHHHHHhhcCC
Q 007512 142 EFGCLVVNAPTANTVAAAEHGIALLAAMARNVAQADASVKAGKWQRNKYVGVSLVGKTLAVLGF-GKVGSEVARRAKGLG 220 (600)
Q Consensus 142 ~~GI~V~n~p~~~~~~vAE~~l~lll~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktiGIIGl-G~IG~~vA~~l~~~g 220 (600)
..+|+|+|+-+.+.-++ .+++=++.+.+++ | .+.|.+|+++|= +++..+.+..+..+|
T Consensus 120 ~~~vPVINa~~~~~HPt--QaLaDl~Ti~e~~------------------g-~l~gl~ia~vGD~~rva~Sl~~~~~~~g 178 (301)
T 2ef0_A 120 HAKVPVVNALSDRAHPL--QALADLLTLKEVF------------------G-GLAGLEVAWVGDGNNVLNSLLEVAPLAG 178 (301)
T ss_dssp HCSSCEEEEECSSCCHH--HHHHHHHHHHHHH------------------S-CCTTCEEEEESCCCHHHHHHHHHHHHHT
T ss_pred HCCCCEEeCCCCccCch--HHHHHHHHHHHHh------------------C-CcCCcEEEEECCCchhHHHHHHHHHHcC
Confidence 34688999766554444 3444444444411 2 478999999997 899999999999999
Q ss_pred CEEEEECCCC--Ch-hHHHHcCCc-ccCHHHHhccCCEEEEecCCC------cc------ccccccHhHhccCCCceEEE
Q 007512 221 MHVIAHDPYA--PA-DRARAIGVD-LVSFDEAIATADFISLHMPLT------PA------TSKVLNDETFGKMKKGVRII 284 (600)
Q Consensus 221 ~~V~~~d~~~--~~-~~a~~~g~~-~~~l~ell~~aDvV~l~~Pl~------~~------t~~li~~~~l~~mk~gailv 284 (600)
++|....|.. +. +......+. ..++++.+++||+|..-.=.. .. ...-++.+.++.+||+++|.
T Consensus 179 ~~v~~~~P~~~~~~~~~~~~~~~~~~~d~~eav~~aDvvy~~~~~smg~~~~~~~~~~~~~~y~v~~e~l~~a~~~ai~m 258 (301)
T 2ef0_A 179 LKVRVATPKGYEPDPGLLKRANAFFTHDPKEAALGAHALYTDVWTSMGQEAEREKRLRDFQGFQVNGELLKLLRPEGVFL 258 (301)
T ss_dssp CEEEEECCTTCCCCHHHHHHHTCEEESCHHHHHTTCSEEEECCCC--------CHHHHHTTTCCBCHHHHTTSCTTCEEE
T ss_pred CEEEEECCchhcCCHHHHhhceeEEECCHHHHhcCCCEEEecCcccCCcccchhHHHHHhhccccCHHHHHhcCCCcEEE
Confidence 9999998864 22 222222354 348999999999998833200 01 12456888999999999999
Q ss_pred Ecc---CCccccH
Q 007512 285 NVA---RGGVIDE 294 (600)
Q Consensus 285 Nva---rg~ivde 294 (600)
-|. ||.=|+.
T Consensus 259 HplP~~Rg~EI~~ 271 (301)
T 2ef0_A 259 HCLPAHYGEETTE 271 (301)
T ss_dssp ECSCCCBTTTBCH
T ss_pred CCCCCCCCCccCH
Confidence 997 5654443
|
| >3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua} | Back alignment and structure |
|---|
Probab=96.94 E-value=0.00092 Score=70.14 Aligned_cols=64 Identities=23% Similarity=0.388 Sum_probs=51.3
Q ss_pred CEEEEEecChhHHHHHHHhhcC-CCEEEE-ECCCCC-hhHHHHcCCcc-cCHHHHhc--cCCEEEEecCC
Q 007512 198 KTLAVLGFGKVGSEVARRAKGL-GMHVIA-HDPYAP-ADRARAIGVDL-VSFDEAIA--TADFISLHMPL 261 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~-g~~V~~-~d~~~~-~~~a~~~g~~~-~~l~ell~--~aDvV~l~~Pl 261 (600)
.+|||||+|.||+..++.++.. ++++.+ +|++.. .+.+...|+.. .+++++++ +.|+|++|+|.
T Consensus 6 ~~vgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~a~~~g~~~~~~~~~ll~~~~~D~V~i~tp~ 75 (359)
T 3e18_A 6 YQLVIVGYGGMGSYHVTLASAADNLEVHGVFDILAEKREAAAQKGLKIYESYEAVLADEKVDAVLIATPN 75 (359)
T ss_dssp EEEEEECCSHHHHHHHHHHHTSTTEEEEEEECSSHHHHHHHHTTTCCBCSCHHHHHHCTTCCEEEECSCG
T ss_pred CcEEEECcCHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHhcCCceeCCHHHHhcCCCCCEEEEcCCc
Confidence 4799999999999999999876 788875 688762 33455567754 48999997 79999999993
|
| >3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=96.92 E-value=0.00012 Score=74.75 Aligned_cols=93 Identities=18% Similarity=0.092 Sum_probs=63.3
Q ss_pred CEEEEEecChhHHHHHHHhhcCCCEEEEECCCCC-hhHHHHcCCc---c-cCHHHHh-ccCCEEEEecCCCccccccccH
Q 007512 198 KTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAP-ADRARAIGVD---L-VSFDEAI-ATADFISLHMPLTPATSKVLND 271 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~-~~~a~~~g~~---~-~~l~ell-~~aDvV~l~~Pl~~~t~~li~~ 271 (600)
++|+|||.|.||..+|..|...|.+|..+++... .+.....|.. . .+..+.+ ..+|+|++++|.. .+...+.
T Consensus 3 mkI~iiGaGa~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~D~vilavk~~-~~~~~l~- 80 (294)
T 3g17_A 3 LSVAIIGPGAVGTTIAYELQQSLPHTTLIGRHAKTITYYTVPHAPAQDIVVKGYEDVTNTFDVIIIAVKTH-QLDAVIP- 80 (294)
T ss_dssp CCEEEECCSHHHHHHHHHHHHHCTTCEEEESSCEEEEEESSTTSCCEEEEEEEGGGCCSCEEEEEECSCGG-GHHHHGG-
T ss_pred cEEEEECCCHHHHHHHHHHHHCCCeEEEEEeccCcEEEEecCCeeccceecCchHhcCCCCCEEEEeCCcc-CHHHHHH-
Confidence 5899999999999999999987889999988742 1111122321 1 1333444 8899999999944 3454442
Q ss_pred hHhccCCCceEEEEccCCccc
Q 007512 272 ETFGKMKKGVRIINVARGGVI 292 (600)
Q Consensus 272 ~~l~~mk~gailvNvarg~iv 292 (600)
..-..++++.+||.+.-|=-.
T Consensus 81 ~l~~~l~~~~~iv~~~nGi~~ 101 (294)
T 3g17_A 81 HLTYLAHEDTLIILAQNGYGQ 101 (294)
T ss_dssp GHHHHEEEEEEEEECCSSCCC
T ss_pred HHHHhhCCCCEEEEeccCccc
Confidence 222346788899999876443
|
| >1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=96.91 E-value=0.00082 Score=61.42 Aligned_cols=67 Identities=12% Similarity=0.081 Sum_probs=48.7
Q ss_pred CCEEEEEecChhHHHHHHHhhcCCCEEEEECCCCCh--hHH---HHcCCccc--------CHHHH-hccCCEEEEecCCC
Q 007512 197 GKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPA--DRA---RAIGVDLV--------SFDEA-IATADFISLHMPLT 262 (600)
Q Consensus 197 gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~~--~~a---~~~g~~~~--------~l~el-l~~aDvV~l~~Pl~ 262 (600)
.+++.|+|+|.+|+.+++.|...|.+|.++|++... +.. ...|+... .++++ +.+||+|+++++..
T Consensus 3 ~~~vlI~G~G~vG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~d 82 (153)
T 1id1_A 3 KDHFIVCGHSILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLGDNADVIPGDSNDSSVLKKAGIDRCRAILALSDND 82 (153)
T ss_dssp CSCEEEECCSHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHCTTCEEEESCTTSHHHHHHHTTTTCSEEEECSSCH
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEECCChHHHHHHHHhhcCCCeEEEcCCCCHHHHHHcChhhCCEEEEecCCh
Confidence 568999999999999999999999999999986411 111 12344321 24444 78899999999854
Q ss_pred c
Q 007512 263 P 263 (600)
Q Consensus 263 ~ 263 (600)
+
T Consensus 83 ~ 83 (153)
T 1id1_A 83 A 83 (153)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A* | Back alignment and structure |
|---|
Probab=96.91 E-value=0.0025 Score=66.00 Aligned_cols=97 Identities=13% Similarity=0.196 Sum_probs=66.2
Q ss_pred ceeccCCEEEEEecChhHHHHHHHhhcCCC-EEEEECCCCC-hhHHHH--------cCC--ccc---C---HHHHhccCC
Q 007512 192 GVSLVGKTLAVLGFGKVGSEVARRAKGLGM-HVIAHDPYAP-ADRARA--------IGV--DLV---S---FDEAIATAD 253 (600)
Q Consensus 192 g~~l~gktiGIIGlG~IG~~vA~~l~~~g~-~V~~~d~~~~-~~~a~~--------~g~--~~~---~---l~ell~~aD 253 (600)
+..+.||++.|+|.|.+|+.++..|...|. +|..+++... .+++.+ .+. ... + +.+.+.++|
T Consensus 149 ~~~l~gk~~lVlGaGG~g~aia~~L~~~Ga~~V~i~nR~~~~~~~a~~la~~~~~~~~~~~~~~~~~~~~~l~~~l~~aD 228 (315)
T 3tnl_A 149 GHDIIGKKMTICGAGGAATAICIQAALDGVKEISIFNRKDDFYANAEKTVEKINSKTDCKAQLFDIEDHEQLRKEIAESV 228 (315)
T ss_dssp TCCCTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHTCS
T ss_pred CCCccCCEEEEECCChHHHHHHHHHHHCCCCEEEEEECCCchHHHHHHHHHHhhhhcCCceEEeccchHHHHHhhhcCCC
Confidence 457889999999999999999999999998 8999988732 232221 121 111 2 456678999
Q ss_pred EEEEecCCCc--cc-cccccHhHhccCCCceEEEEccCCc
Q 007512 254 FISLHMPLTP--AT-SKVLNDETFGKMKKGVRIINVARGG 290 (600)
Q Consensus 254 vV~l~~Pl~~--~t-~~li~~~~l~~mk~gailvNvarg~ 290 (600)
+|+.++|..- .. ...+. ....++++.+++|+.-.+
T Consensus 229 iIINaTp~Gm~~~~~~~p~~--~~~~l~~~~~V~DlvY~P 266 (315)
T 3tnl_A 229 IFTNATGVGMKPFEGETLLP--SADMLRPELIVSDVVYKP 266 (315)
T ss_dssp EEEECSSTTSTTSTTCCSCC--CGGGCCTTCEEEESCCSS
T ss_pred EEEECccCCCCCCCCCCCCC--cHHHcCCCCEEEEeccCC
Confidence 9999999642 11 11121 223467888888887544
|
| >2i6u_A Otcase, ornithine carbamoyltransferase; X-RAY crystallography, ornithine carbamyoltransferase, carbamoyl phosphate, L- norvaline; 2.20A {Mycobacterium tuberculosis} PDB: 2p2g_A | Back alignment and structure |
|---|
Probab=96.90 E-value=0.017 Score=59.51 Aligned_cols=125 Identities=20% Similarity=0.205 Sum_probs=86.7
Q ss_pred hCCceeecCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCccccccccceeccCCEEEEEecC--hhHHHHHHHhhcC
Q 007512 142 EFGCLVVNAPTANTVAAAEHGIALLAAMARNVAQADASVKAGKWQRNKYVGVSLVGKTLAVLGFG--KVGSEVARRAKGL 219 (600)
Q Consensus 142 ~~GI~V~n~p~~~~~~vAE~~l~lll~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktiGIIGlG--~IG~~vA~~l~~~ 219 (600)
..+|+|+|+-+...-++ .+++=++.+.+++ | .+.|.+|++||=| ++..+.+..+..+
T Consensus 114 ~~~vPVINa~~~~~HPt--QaLaDl~Ti~e~~------------------g-~l~gl~va~vGD~~~rva~Sl~~~~~~~ 172 (307)
T 2i6u_A 114 VATVPVINALSDEFHPC--QVLADLQTIAERK------------------G-ALRGLRLSYFGDGANNMAHSLLLGGVTA 172 (307)
T ss_dssp HCSSCEEESCCSSCCHH--HHHHHHHHHHHHH------------------S-CCTTCEEEEESCTTSHHHHHHHHHHHHT
T ss_pred hCCCCEEcCCCCCcCcc--HHHHHHHHHHHHh------------------C-CcCCeEEEEECCCCcCcHHHHHHHHHHC
Confidence 34689999876555444 3444444444411 2 4789999999996 9999999999999
Q ss_pred CCEEEEECCCC--Chh-H---H----HHcCCc---ccCHHHHhccCCEEEEecCC-------Ccc-----ccccccHhHh
Q 007512 220 GMHVIAHDPYA--PAD-R---A----RAIGVD---LVSFDEAIATADFISLHMPL-------TPA-----TSKVLNDETF 274 (600)
Q Consensus 220 g~~V~~~d~~~--~~~-~---a----~~~g~~---~~~l~ell~~aDvV~l~~Pl-------~~~-----t~~li~~~~l 274 (600)
|++|....|.. +.+ . + .+.|.. ..++++.+++||+|..-.=. .++ ...-++.+.+
T Consensus 173 g~~v~~~~P~~~~~~~~~~~~~~~~a~~~G~~~~~~~d~~eav~~aDvvy~~~w~smg~~~~~~~~~~~~~~y~v~~~~l 252 (307)
T 2i6u_A 173 GIHVTVAAPEGFLPDPSVRAAAERRAQDTGASVTVTADAHAAAAGADVLVTDTWTSMGQENDGLDRVKPFRPFQLNSRLL 252 (307)
T ss_dssp TCEEEEECCTTSCCCHHHHHHHHHHHHHHTCCEEEESCHHHHHTTCSEEEECCSSCTTCTTSCCCSSGGGGGGCBCHHHH
T ss_pred CCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEECHHHHhcCCCEEEecceecCCcccchHHHHHHHhhcCCCHHHH
Confidence 99999998854 221 1 2 255643 34899999999999983320 011 1245688888
Q ss_pred ccCCCceEEEEcc
Q 007512 275 GKMKKGVRIINVA 287 (600)
Q Consensus 275 ~~mk~gailvNva 287 (600)
+.+||+++|.-|.
T Consensus 253 ~~a~~~ai~mH~l 265 (307)
T 2i6u_A 253 ALADSDAIVLHCL 265 (307)
T ss_dssp HHSCTTCEEEECS
T ss_pred hhcCCCcEEECCC
Confidence 8888899988886
|
| >3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=96.88 E-value=0.00098 Score=69.02 Aligned_cols=63 Identities=11% Similarity=0.112 Sum_probs=50.8
Q ss_pred CEEEEEecChhHHHHHHHhhcC-CCEEE-EECCCCCh--hHHHHcCCc--ccCHHHHhc--cCCEEEEecC
Q 007512 198 KTLAVLGFGKVGSEVARRAKGL-GMHVI-AHDPYAPA--DRARAIGVD--LVSFDEAIA--TADFISLHMP 260 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~-g~~V~-~~d~~~~~--~~a~~~g~~--~~~l~ell~--~aDvV~l~~P 260 (600)
.+|||||+|.||+..++.++.. ++++. ++|++... ..+...|+. +.++++++. ++|+|++|+|
T Consensus 6 ~~igiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp 76 (330)
T 3e9m_A 6 IRYGIMSTAQIVPRFVAGLRESAQAEVRGIASRRLENAQKMAKELAIPVAYGSYEELCKDETIDIIYIPTY 76 (330)
T ss_dssp EEEEECSCCTTHHHHHHHHHHSSSEEEEEEBCSSSHHHHHHHHHTTCCCCBSSHHHHHHCTTCSEEEECCC
T ss_pred EEEEEECchHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHHHcCCCceeCCHHHHhcCCCCCEEEEcCC
Confidence 5899999999999999999875 78887 57887632 334556763 458999997 8999999999
|
| >3bio_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, MCSG, PSI-2, GFO/IDH/MO family, protein structure initiative; HET: MSE EPE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=96.86 E-value=0.0014 Score=67.44 Aligned_cols=98 Identities=12% Similarity=0.177 Sum_probs=59.6
Q ss_pred CEEEEEecChhHHHHHHHhhcC-CCEEE-EECCCCChhHHHHcCCcc---cCHHHHhccCCEEEEecCCCccccccccHh
Q 007512 198 KTLAVLGFGKVGSEVARRAKGL-GMHVI-AHDPYAPADRARAIGVDL---VSFDEAIATADFISLHMPLTPATSKVLNDE 272 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~-g~~V~-~~d~~~~~~~a~~~g~~~---~~l~ell~~aDvV~l~~Pl~~~t~~li~~~ 272 (600)
.+|||||+|+||+.+++.++.. ++++. ++|++... +...|+.+ .++.+. .++|+|++|+|.... . +.
T Consensus 10 irv~IIG~G~iG~~~~~~l~~~~~~elvav~d~~~~~--~~~~g~~~~~~~~l~~~-~~~DvViiatp~~~h-~----~~ 81 (304)
T 3bio_A 10 IRAAIVGYGNIGRYALQALREAPDFEIAGIVRRNPAE--VPFELQPFRVVSDIEQL-ESVDVALVCSPSREV-E----RT 81 (304)
T ss_dssp EEEEEECCSHHHHHHHHHHHHCTTEEEEEEECC---------CCTTSCEESSGGGS-SSCCEEEECSCHHHH-H----HH
T ss_pred CEEEEECChHHHHHHHHHHhcCCCCEEEEEEcCCHHH--HHHcCCCcCCHHHHHhC-CCCCEEEECCCchhh-H----HH
Confidence 4899999999999999999864 78988 48887532 22256543 244444 789999999993321 1 22
Q ss_pred HhccCCCceEEEEccC--Ccc-ccHHHHHHhHhc
Q 007512 273 TFGKMKKGVRIINVAR--GGV-IDEEALVRALDS 303 (600)
Q Consensus 273 ~l~~mk~gailvNvar--g~i-vde~aL~~aL~~ 303 (600)
....++.|.-+++..- +.. .+...|.++.++
T Consensus 82 ~~~al~aG~~Vi~ekP~~a~~~~~~~~l~~~a~~ 115 (304)
T 3bio_A 82 ALEILKKGICTADSFDIHDGILALRRSLGDAAGK 115 (304)
T ss_dssp HHHHHTTTCEEEECCCCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCeEEECCCCCCCCHHHHHHHHHHHHh
Confidence 2234566777776532 212 223455555554
|
| >2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomi protein structure initiative; 2.30A {Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6 | Back alignment and structure |
|---|
Probab=96.86 E-value=0.0022 Score=61.48 Aligned_cols=73 Identities=14% Similarity=0.247 Sum_probs=60.5
Q ss_pred ccEEEEEecCCCCChhhHHhhhhcCCccccceEeeeecCCCcEEEEEEeC--CCCcHHHHHHHhcCCCcceEEEe
Q 007512 526 GSIILCRQVDQPGMIGTVGSILGSENVNVSFMSVGRVAPRKHAVMAIGVD--EQPRKETLKKIGDVPAIEEFVFL 598 (600)
Q Consensus 526 ~~~Liv~~~D~pG~Ia~V~~iL~~~~INIa~m~v~R~~~g~~al~~i~~D--~~~~~~~l~~l~~~~~v~~v~~i 598 (600)
.+.|-+...|+||++++|+.++++.|+||.++.++.....+..-|.|.++ +..-+.+.++|.++..|.+|..+
T Consensus 29 ~~~LsVlVeN~pGvLaRItglfsrRG~NI~SLtV~~ted~gisRitIvV~g~e~~ieqL~kQL~KLidVikV~dl 103 (193)
T 2fgc_A 29 EHLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVKGDDKTIEQIEKQAYKLVEVVKVTPI 103 (193)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEEEECTTHHHHHHHHHTTSTTEEEEEEC
T ss_pred EEEEEEEECCCChHHHHHHHHHHHCCceEEEEEeeccCCCCEEEEEEEEECCHHHHHHHHHHhcCcCceEEEEEe
Confidence 47888888999999999999999999999999999776666676655554 55666888899998888887754
|
| >3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=96.84 E-value=0.0023 Score=66.25 Aligned_cols=64 Identities=22% Similarity=0.403 Sum_probs=49.4
Q ss_pred CEEEEEecChhHHHHHHHhh-cC-CCEEE-EECCCCCh--hHHHHcCCc--ccCHHHHhc--cCCEEEEecCC
Q 007512 198 KTLAVLGFGKVGSEVARRAK-GL-GMHVI-AHDPYAPA--DRARAIGVD--LVSFDEAIA--TADFISLHMPL 261 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~-~~-g~~V~-~~d~~~~~--~~a~~~g~~--~~~l~ell~--~aDvV~l~~Pl 261 (600)
.+|||||+|.||+..++.++ .. +++++ ++|++... ..+.+.|+. +.++++++. ++|+|++|+|.
T Consensus 9 ~~v~iiG~G~ig~~~~~~l~~~~~~~~~vav~d~~~~~~~~~a~~~g~~~~~~~~~~~l~~~~~D~V~i~tp~ 81 (346)
T 3cea_A 9 LRAAIIGLGRLGERHARHLVNKIQGVKLVAACALDSNQLEWAKNELGVETTYTNYKDMIDTENIDAIFIVAPT 81 (346)
T ss_dssp EEEEEECCSTTHHHHHHHHHHTCSSEEEEEEECSCHHHHHHHHHTTCCSEEESCHHHHHTTSCCSEEEECSCG
T ss_pred ceEEEEcCCHHHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHHhCCCcccCCHHHHhcCCCCCEEEEeCCh
Confidence 48999999999999999988 54 78865 57987632 223445763 358999986 69999999994
|
| >2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes} | Back alignment and structure |
|---|
Probab=96.81 E-value=0.0018 Score=68.66 Aligned_cols=122 Identities=20% Similarity=0.178 Sum_probs=89.8
Q ss_pred CceeecCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCccccccccceeccCCEEEEEecChhHHHHHHHhhcCCC-E
Q 007512 144 GCLVVNAPTANTVAAAEHGIALLAAMARNVAQADASVKAGKWQRNKYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGM-H 222 (600)
Q Consensus 144 GI~V~n~p~~~~~~vAE~~l~lll~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktiGIIGlG~IG~~vA~~l~~~g~-~ 222 (600)
.|.|.|+ --..+|--+++-++..+| ..|..+...+|.|+|.|..|..+|+.+.+.|. +
T Consensus 156 ~ipvf~D---DiqGTa~V~lAall~al~------------------l~g~~l~d~kVVi~GAGaAG~~iA~ll~~~Ga~~ 214 (398)
T 2a9f_A 156 HIPVFHD---DQHGTAIVVLAAIFNSLK------------------LLKKSLDEVSIVVNGGGSAGLSITRKLLAAGATK 214 (398)
T ss_dssp SSCEEEH---HHHHHHHHHHHHHHHHHH------------------TTTCCTTSCEEEEECCSHHHHHHHHHHHHHTCCE
T ss_pred Ccceecc---hhhhHHHHHHHHHHHHHH------------------HhCCCCCccEEEEECCCHHHHHHHHHHHHcCCCe
Confidence 5888883 222344455555555555 35678999999999999999999999999999 9
Q ss_pred EEEECCCC--C-----------hhHHHHcCC--cccCHHHHhccCCEEEEecCCCccccccccHhHhccCCCceEEEEcc
Q 007512 223 VIAHDPYA--P-----------ADRARAIGV--DLVSFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVA 287 (600)
Q Consensus 223 V~~~d~~~--~-----------~~~a~~~g~--~~~~l~ell~~aDvV~l~~Pl~~~t~~li~~~~l~~mk~gailvNva 287 (600)
|+.+|.+. . ...+..... ...+|.|.++.+|+++=+- +-+++.++.++.|+++++|+.++
T Consensus 215 I~v~D~~Gli~~~R~~~L~~~k~~fa~~~~~~~~~~~L~eav~~ADV~IG~S-----apgl~T~EmVk~Ma~~pIIfals 289 (398)
T 2a9f_A 215 VTVVDKFGIINEQEAAQLAPHHLDIAKVTNREFKSGTLEDALEGADIFIGVS-----APGVLKAEWISKMAARPVIFAMA 289 (398)
T ss_dssp EEEEETTEECCTTCCCSCCC---CHHHHHSCTTCCCSCSHHHHTTCSEEECC-----STTCCCHHHHHTSCSSCEEEECC
T ss_pred EEEEECCCcccCCccccchHHHHHHhhccCcccchhhHHHHhccCCEEEecC-----CCCCCCHHHHHhhCCCCEEEECC
Confidence 99998762 0 011222111 1336999999999987652 35889999999999999999999
Q ss_pred CCcc
Q 007512 288 RGGV 291 (600)
Q Consensus 288 rg~i 291 (600)
.-..
T Consensus 290 NPt~ 293 (398)
T 2a9f_A 290 NPIP 293 (398)
T ss_dssp SSSC
T ss_pred CCCc
Confidence 7543
|
| >1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A* | Back alignment and structure |
|---|
Probab=96.78 E-value=0.0011 Score=68.47 Aligned_cols=66 Identities=17% Similarity=0.189 Sum_probs=46.8
Q ss_pred CCEEEEEecChhHHHHHHHhhcCC--CEEEEECCCCChhHHHHcC----Cc-------c-cCHHHHhccCCEEEEecCCC
Q 007512 197 GKTLAVLGFGKVGSEVARRAKGLG--MHVIAHDPYAPADRARAIG----VD-------L-VSFDEAIATADFISLHMPLT 262 (600)
Q Consensus 197 gktiGIIGlG~IG~~vA~~l~~~g--~~V~~~d~~~~~~~a~~~g----~~-------~-~~l~ell~~aDvV~l~~Pl~ 262 (600)
-++|+|||.|.||.++|..++..| -+|..||.......+...+ .. . .+..+.+++||+|++++|..
T Consensus 6 ~~kI~IIGaG~vG~sla~~l~~~~~~~ev~l~Di~~~~~~~~~~dl~~~~~~~~~~~~i~~~~~~al~~aDvViia~~~~ 85 (316)
T 1ldn_A 6 GARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGDYDDCRDADLVVICAGAN 85 (316)
T ss_dssp SCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEECCGGGTTTCSEEEECCSCC
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCCcchHHHHHhhHHHHhhhcCCCeEEEcCcHHHhCCCCEEEEcCCCC
Confidence 368999999999999999997545 4899999875322221111 11 0 13456799999999998854
|
| >2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A* | Back alignment and structure |
|---|
Probab=96.77 E-value=0.0026 Score=58.06 Aligned_cols=99 Identities=13% Similarity=0.126 Sum_probs=68.8
Q ss_pred CCEEEEEec----ChhHHHHHHHhhcCCCEEEEECCCCChhHHHHcCCccc-CHHHHhccCCEEEEecCCCccccccccH
Q 007512 197 GKTLAVLGF----GKVGSEVARRAKGLGMHVIAHDPYAPADRARAIGVDLV-SFDEAIATADFISLHMPLTPATSKVLND 271 (600)
Q Consensus 197 gktiGIIGl----G~IG~~vA~~l~~~g~~V~~~d~~~~~~~a~~~g~~~~-~l~ell~~aDvV~l~~Pl~~~t~~li~~ 271 (600)
-++|+|||. |++|..+++.|+..|++|+..+|... + -.|+... +++++....|++++++|. +....++.+
T Consensus 22 p~~iaVVGas~~~g~~G~~~~~~l~~~G~~v~~Vnp~~~-~---i~G~~~y~sl~~l~~~vDlvvi~vp~-~~~~~vv~~ 96 (144)
T 2d59_A 22 YKKIALVGASPKPERDANIVMKYLLEHGYDVYPVNPKYE-E---VLGRKCYPSVLDIPDKIEVVDLFVKP-KLTMEYVEQ 96 (144)
T ss_dssp CCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCS-E---ETTEECBSSGGGCSSCCSEEEECSCH-HHHHHHHHH
T ss_pred CCEEEEEccCCCCCchHHHHHHHHHHCCCEEEEECCCCC-e---ECCeeccCCHHHcCCCCCEEEEEeCH-HHHHHHHHH
Confidence 689999999 79999999999999999888887642 1 1366544 799988899999999994 555555532
Q ss_pred hHhccCCCceEEEEccCCccccHHHHHHhHhcCCc
Q 007512 272 ETFGKMKKGVRIINVARGGVIDEEALVRALDSGRV 306 (600)
Q Consensus 272 ~~l~~mk~gailvNvarg~ivde~aL~~aL~~g~i 306 (600)
..+ ...+++++.. |. .++++.+..++..+
T Consensus 97 -~~~-~gi~~i~~~~--g~--~~~~l~~~a~~~Gi 125 (144)
T 2d59_A 97 -AIK-KGAKVVWFQY--NT--YNREASKKADEAGL 125 (144)
T ss_dssp -HHH-HTCSEEEECT--TC--CCHHHHHHHHHTTC
T ss_pred -HHH-cCCCEEEECC--Cc--hHHHHHHHHHHcCC
Confidence 222 3334566553 32 25556666665433
|
| >1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A* | Back alignment and structure |
|---|
Probab=96.77 E-value=0.0027 Score=66.11 Aligned_cols=67 Identities=19% Similarity=0.285 Sum_probs=49.9
Q ss_pred CCEEEEEecChhHHHHHHHhhcCCC-EEEEECCCCChhHH--H-------HcC----Ccc-cCHHHHhccCCEEEEec--
Q 007512 197 GKTLAVLGFGKVGSEVARRAKGLGM-HVIAHDPYAPADRA--R-------AIG----VDL-VSFDEAIATADFISLHM-- 259 (600)
Q Consensus 197 gktiGIIGlG~IG~~vA~~l~~~g~-~V~~~d~~~~~~~a--~-------~~g----~~~-~~l~ell~~aDvV~l~~-- 259 (600)
.++|+|||.|.+|..+|..|...|+ +|..||........ . ..+ +.. .++++.+++||+|++++
T Consensus 9 ~~kI~VIGaG~vG~~lA~~la~~g~~~V~L~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~~ea~~~aDiVi~a~g~ 88 (331)
T 1pzg_A 9 RKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAEYSYEAALTGADCVIVTAGL 88 (331)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEEECSHHHHHTTCSEEEECCSC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEECChhHHHHHHHHHHhhhhccCCCCEEEEeCCHHHHhCCCCEEEEccCC
Confidence 3589999999999999999987776 89999987632111 1 011 112 47888899999999999
Q ss_pred CCCc
Q 007512 260 PLTP 263 (600)
Q Consensus 260 Pl~~ 263 (600)
|..+
T Consensus 89 p~~~ 92 (331)
T 1pzg_A 89 TKVP 92 (331)
T ss_dssp SSCT
T ss_pred CCCC
Confidence 6443
|
| >2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11 | Back alignment and structure |
|---|
Probab=96.76 E-value=0.0022 Score=58.20 Aligned_cols=58 Identities=16% Similarity=0.207 Sum_probs=45.8
Q ss_pred cEEEEEecCCCCChhhHHhhhhcCCccccceEeeeecCCCcEEEEEEeCCCCcHHHHHHHhc
Q 007512 527 SIILCRQVDQPGMIGTVGSILGSENVNVSFMSVGRVAPRKHAVMAIGVDEQPRKETLKKIGD 588 (600)
Q Consensus 527 ~~Liv~~~D~pG~Ia~V~~iL~~~~INIa~m~v~R~~~g~~al~~i~~D~~~~~~~l~~l~~ 588 (600)
+.+.+..+|+||+++++.+.|+++||||.+|...+ .++.+.++++++ -.+.+.+.|++
T Consensus 73 svv~v~~~d~pGvla~i~~~L~~~~InI~~~~~~~--~~~~~~~~i~~~--d~~~A~~~L~~ 130 (144)
T 2f06_A 73 DVVGISCPNVPGALAKVLGFLSAEGVFIEYMYSFA--NNNVANVVIRPS--NMDKCIEVLKE 130 (144)
T ss_dssp EEEEEEEESSTTHHHHHHHHHHHTTCCEEEEEEEE--ETTEEEEEEEES--CHHHHHHHHHH
T ss_pred eEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEEEEc--cCCcEEEEEEeC--CHHHHHHHHHH
Confidence 34556789999999999999999999999988875 456788888886 33556666655
|
| >2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=96.74 E-value=0.0017 Score=66.68 Aligned_cols=63 Identities=22% Similarity=0.212 Sum_probs=45.0
Q ss_pred CEEEEEecChhHHHHHHHhhcCCC--EEEEECCCCChhH--HHHc--C------Ccc--cCHHHHhccCCEEEEecCC
Q 007512 198 KTLAVLGFGKVGSEVARRAKGLGM--HVIAHDPYAPADR--ARAI--G------VDL--VSFDEAIATADFISLHMPL 261 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~g~--~V~~~d~~~~~~~--a~~~--g------~~~--~~l~ell~~aDvV~l~~Pl 261 (600)
++|+|||.|.+|..+|..+...|+ +|..||....... +.+. + ... .+ .+.+++||+|+++++.
T Consensus 1 mkI~VIGaG~vG~~la~~la~~g~~~eV~L~D~~~~~~~~~~~~l~~~~~~~~~~~i~~~~-~~a~~~aDvVIi~~~~ 77 (304)
T 2v6b_A 1 MKVGVVGTGFVGSTAAFALVLRGSCSELVLVDRDEDRAQAEAEDIAHAAPVSHGTRVWHGG-HSELADAQVVILTAGA 77 (304)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHTTSCCTTSCCEEEEEC-GGGGTTCSEEEECC--
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHhhhhhhhhcCCeEEEECC-HHHhCCCCEEEEcCCC
Confidence 489999999999999999988788 9999998752111 2211 1 111 23 3578999999999963
|
| >1vlv_A Otcase, ornithine carbamoyltransferase; TM1097, structural genomics, protein structure initiative, PSI, joint center for structu genomics; 2.25A {Thermotoga maritima} SCOP: c.78.1.1 c.78.1.1 | Back alignment and structure |
|---|
Probab=96.74 E-value=0.016 Score=59.97 Aligned_cols=131 Identities=19% Similarity=0.255 Sum_probs=89.1
Q ss_pred hCCceeecCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCccccccccceeccCCEEEEEecC--hhHHHHHHHhhcC
Q 007512 142 EFGCLVVNAPTANTVAAAEHGIALLAAMARNVAQADASVKAGKWQRNKYVGVSLVGKTLAVLGFG--KVGSEVARRAKGL 219 (600)
Q Consensus 142 ~~GI~V~n~p~~~~~~vAE~~l~lll~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktiGIIGlG--~IG~~vA~~l~~~ 219 (600)
..+|+|+|+-+...-++ .+++=++.+.++ .| .+.|.+|+++|=| ++..+.+..+..|
T Consensus 133 ~~~vPVINa~~~~~HPt--QaLaDl~Ti~e~------------------~g-~l~gl~va~vGD~~~rva~Sl~~~~~~~ 191 (325)
T 1vlv_A 133 YSGVPVYNGLTDEFHPT--QALADLMTIEEN------------------FG-RLKGVKVVFMGDTRNNVATSLMIACAKM 191 (325)
T ss_dssp HHCSCEEESCCSSCCHH--HHHHHHHHHHHH------------------HS-CSTTCEEEEESCTTSHHHHHHHHHHHHT
T ss_pred hCCCCEEeCCCCCCCcH--HHHHHHHHHHHH------------------hC-CcCCcEEEEECCCCcCcHHHHHHHHHHC
Confidence 34689999766544443 334444444431 12 4789999999996 9999999999999
Q ss_pred CCEEEEECCCC---ChhH---H----HHcCCc---ccCHHHHhccCCEEEEecCC-------Ccc-----ccccccHhHh
Q 007512 220 GMHVIAHDPYA---PADR---A----RAIGVD---LVSFDEAIATADFISLHMPL-------TPA-----TSKVLNDETF 274 (600)
Q Consensus 220 g~~V~~~d~~~---~~~~---a----~~~g~~---~~~l~ell~~aDvV~l~~Pl-------~~~-----t~~li~~~~l 274 (600)
|++|....|.. +.+. + .+.|.. ..++++++++||+|..-.=. .++ ...-++.+.+
T Consensus 192 G~~v~~~~P~~~~p~~~~~~~~~~~a~~~G~~v~~~~d~~eav~~aDvvyt~~w~smg~~~~~~~~~~~~~~y~v~~ell 271 (325)
T 1vlv_A 192 GMNFVACGPEELKPRSDVFKRCQEIVKETDGSVSFTSNLEEALAGADVVYTDVWASMGEEDKEKERMALLKPYQVNERVM 271 (325)
T ss_dssp TCEEEEESCGGGCCCHHHHHHHHHHHHHHCCEEEEESCHHHHHTTCSEEEECCCC----------CHHHHGGGCBCHHHH
T ss_pred CCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEcCHHHHHccCCEEEeccccccccccchHhHHHHHhhcCCCHHHH
Confidence 99999988753 2211 2 255643 34899999999999883321 011 1245688888
Q ss_pred ccC-CCceEEEEcc---CCcccc
Q 007512 275 GKM-KKGVRIINVA---RGGVID 293 (600)
Q Consensus 275 ~~m-k~gailvNva---rg~ivd 293 (600)
+.+ ||+++|.-|. ||.=|+
T Consensus 272 ~~a~k~dai~mH~LP~~Rg~EI~ 294 (325)
T 1vlv_A 272 EMTGKSETIFMHCLPAVKGQEVT 294 (325)
T ss_dssp HTTCCTTCEEEECSCCCBTTTBC
T ss_pred HhccCCCeEEECCCCCCCCcccC
Confidence 888 9999999986 454443
|
| >1ml4_A Aspartate transcarbamoylase; beta pleated sheet, protein inhibitor complex, transferase; HET: PAL; 1.80A {Pyrococcus abyssi} SCOP: c.78.1.1 c.78.1.1 | Back alignment and structure |
|---|
Probab=96.72 E-value=0.0078 Score=61.99 Aligned_cols=94 Identities=16% Similarity=0.199 Sum_probs=69.7
Q ss_pred eccCCEEEEEecC---hhHHHHHHHhhcCCCEEEEECCCC--Ch----hHHHHcCCcc---cCHHHHhccCCEEEEecCC
Q 007512 194 SLVGKTLAVLGFG---KVGSEVARRAKGLGMHVIAHDPYA--PA----DRARAIGVDL---VSFDEAIATADFISLHMPL 261 (600)
Q Consensus 194 ~l~gktiGIIGlG---~IG~~vA~~l~~~g~~V~~~d~~~--~~----~~a~~~g~~~---~~l~ell~~aDvV~l~~Pl 261 (600)
.+.|.+|++||=| ++..+++..+..+|++|....|.. +. +.+++.|... .++++++++||+|..-.=.
T Consensus 152 ~l~gl~va~vGD~~~~rva~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~d~~eav~~aDvvyt~~~q 231 (308)
T 1ml4_A 152 RIDGLKIGLLGDLKYGRTVHSLAEALTFYDVELYLISPELLRMPRHIVEELREKGMKVVETTTLEDVIGKLDVLYVTRIQ 231 (308)
T ss_dssp CSSSEEEEEESCTTTCHHHHHHHHHGGGSCEEEEEECCGGGCCCHHHHHHHHHTTCCEEEESCTHHHHTTCSEEEECCCC
T ss_pred CCCCeEEEEeCCCCcCchHHHHHHHHHHCCCEEEEECCccccCCHHHHHHHHHcCCeEEEEcCHHHHhcCCCEEEECCcc
Confidence 4789999999984 899999999999999999988753 22 2234446542 4899999999999885421
Q ss_pred Cc------cc-----cccccHhHhccCCCceEEEEcc
Q 007512 262 TP------AT-----SKVLNDETFGKMKKGVRIINVA 287 (600)
Q Consensus 262 ~~------~t-----~~li~~~~l~~mk~gailvNva 287 (600)
.+ +- ..-++.+.++.+||+++|.-|.
T Consensus 232 ~er~~~~~~~~~~~~~y~v~~~ll~~a~~~ai~mH~l 268 (308)
T 1ml4_A 232 KERFPDEQEYLKVKGSYQVNLKVLEKAKDELRIMHPL 268 (308)
T ss_dssp GGGSSSHHHHHTTTTCCCBCTTGGGGSCTTCEEECCS
T ss_pred ccccCCHHHHHHHhcCcccCHHHHhhcCCCCEEECCC
Confidence 11 00 2446777888888888888886
|
| >1pvv_A Otcase, ornithine carbamoyltransferase; dodecamer; 1.87A {Pyrococcus furiosus} SCOP: c.78.1.1 c.78.1.1 PDB: 1a1s_A | Back alignment and structure |
|---|
Probab=96.71 E-value=0.02 Score=59.17 Aligned_cols=125 Identities=17% Similarity=0.177 Sum_probs=86.3
Q ss_pred hCCceeecCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCccccccccceeccCCEEEEEec-ChhHHHHHHHhhcCC
Q 007512 142 EFGCLVVNAPTANTVAAAEHGIALLAAMARNVAQADASVKAGKWQRNKYVGVSLVGKTLAVLGF-GKVGSEVARRAKGLG 220 (600)
Q Consensus 142 ~~GI~V~n~p~~~~~~vAE~~l~lll~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktiGIIGl-G~IG~~vA~~l~~~g 220 (600)
..+|+|+|+-+...-++ .+++=++.+.++ .| .+.|.+|++||= +++..+++..+..+|
T Consensus 121 ~~~vPVINa~~~~~HPt--QaLaDl~Ti~e~------------------~g-~l~gl~va~vGD~~rva~Sl~~~~~~~g 179 (315)
T 1pvv_A 121 YATVPVINGLSDFSHPC--QALADYMTIWEK------------------KG-TIKGVKVVYVGDGNNVAHSLMIAGTKLG 179 (315)
T ss_dssp HCSSCEEEEECSSCCHH--HHHHHHHHHHHH------------------HS-CCTTCEEEEESCCCHHHHHHHHHHHHTT
T ss_pred hCCCCEEcCCCCCCCcH--HHHHHHHHHHHH------------------hC-CcCCcEEEEECCCcchHHHHHHHHHHCC
Confidence 34688888765544443 334444444431 12 478999999997 899999999999999
Q ss_pred CEEEEECCCC--Chh-H---H----HHcCCc---ccCHHHHhccCCEEEEecCC-------Ccc-----ccccccHhHhc
Q 007512 221 MHVIAHDPYA--PAD-R---A----RAIGVD---LVSFDEAIATADFISLHMPL-------TPA-----TSKVLNDETFG 275 (600)
Q Consensus 221 ~~V~~~d~~~--~~~-~---a----~~~g~~---~~~l~ell~~aDvV~l~~Pl-------~~~-----t~~li~~~~l~ 275 (600)
++|....|.. +.+ . + ++.|.. ..++++.+++||+|..-.=. .++ ...-++.+.++
T Consensus 180 ~~v~~~~P~~~~~~~~~~~~~~~~a~~~g~~~~~~~d~~eav~~aDvvy~~~w~smg~~~~~~~~~~~~~~y~v~~ell~ 259 (315)
T 1pvv_A 180 ADVVVATPEGYEPDEKVIKWAEQNAAESGGSFELLHDPVKAVKDADVIYTDVWASMGQEAEAEERRKIFRPFQVNKDLVK 259 (315)
T ss_dssp CEEEEECCTTCCCCHHHHHHHHHHHHHHTCEEEEESCHHHHTTTCSEEEECCCCCSSTTSSSSHHHHHHGGGCBCHHHHH
T ss_pred CEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEeCHHHHhCCCCEEEEcceeccCcccchHHHHHHHHhcCCCHHHHh
Confidence 9999988754 221 1 2 255643 34899999999999884321 011 12456888888
Q ss_pred cCCCceEEEEcc
Q 007512 276 KMKKGVRIINVA 287 (600)
Q Consensus 276 ~mk~gailvNva 287 (600)
.+||+++|.-|.
T Consensus 260 ~a~~~ai~mH~l 271 (315)
T 1pvv_A 260 HAKPDYMFMHCL 271 (315)
T ss_dssp TSCTTCEEEECS
T ss_pred hcCCCcEEECCC
Confidence 899999999986
|
| >3r7f_A Aspartate carbamoyltransferase; aspartate transcarbamoylase, carbamoyl phosphate, transferas catalytic cycle; 2.10A {Bacillus subtilis} PDB: 3r7d_A 3r7l_A* 2at2_A | Back alignment and structure |
|---|
Probab=96.71 E-value=0.0075 Score=61.94 Aligned_cols=124 Identities=21% Similarity=0.267 Sum_probs=82.9
Q ss_pred HhCCceeecCC-CCChHHHHHHHHHHHHHHHhchHHHHHHHHcCccccccccceeccCCEEEEEecC---hhHHHHHHHh
Q 007512 141 TEFGCLVVNAP-TANTVAAAEHGIALLAAMARNVAQADASVKAGKWQRNKYVGVSLVGKTLAVLGFG---KVGSEVARRA 216 (600)
Q Consensus 141 ~~~GI~V~n~p-~~~~~~vAE~~l~lll~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktiGIIGlG---~IG~~vA~~l 216 (600)
...+|+|+|+- |...-++ .+++=++.+.++ .| .+.|.+|++||=| ++..+.+..+
T Consensus 111 ~~~~vPVINagdg~~~HPt--QaLaDl~Ti~e~------------------~g-~l~glkva~vGD~~~~rva~Sl~~~~ 169 (304)
T 3r7f_A 111 SQVNIPILNAGDGCGQHPT--QSLLDLMTIYEE------------------FN-TFKGLTVSIHGDIKHSRVARSNAEVL 169 (304)
T ss_dssp HHCSSCEEESCCTTSCCHH--HHHHHHHHHHHH------------------HS-CCTTCEEEEESCCTTCHHHHHHHHHH
T ss_pred HhCCCCEEeCCCCCCcCcH--HHHHHHHHHHHH------------------hC-CCCCCEEEEEcCCCCcchHHHHHHHH
Confidence 34678999985 4444333 333333333331 12 4789999999975 6999999999
Q ss_pred hcCCCEEEEECCCC-ChhHHHHcCCcccCHHHHhccCCEEEEecCCCcc-----------ccccccHhHhccCCCceEEE
Q 007512 217 KGLGMHVIAHDPYA-PADRARAIGVDLVSFDEAIATADFISLHMPLTPA-----------TSKVLNDETFGKMKKGVRII 284 (600)
Q Consensus 217 ~~~g~~V~~~d~~~-~~~~a~~~g~~~~~l~ell~~aDvV~l~~Pl~~~-----------t~~li~~~~l~~mk~gailv 284 (600)
..+|++|....|.. .++. ...| ...++++++++||+|..-.--.+. ...-++.+.++.+|++++|.
T Consensus 170 ~~~G~~v~~~~P~~~~~~~-~~~g-~~~d~~eav~~aDvvyt~~~q~er~~~~~~~~~~~~~y~v~~~~l~~a~~~ai~m 247 (304)
T 3r7f_A 170 TRLGARVLFSGPSEWQDEE-NTFG-TYVSMDEAVESSDVVMLLRIQNERHQSAVSQEGYLNKYGLTVERAERMKRHAIIM 247 (304)
T ss_dssp HHTTCEEEEESCGGGSCTT-CSSC-EECCHHHHHHHCSEEEECCCCTTTCCSSCCSTTHHHHHSBCHHHHTTSCTTCEEE
T ss_pred HHcCCEEEEECCCccCcch-hhcC-ccCCHHHHhCCCCEEEeccchhhccccchhHHHHhCCCccCHHHHhhcCCCCEEE
Confidence 99999999988753 2211 1223 345899999999999884311110 12336778888888888888
Q ss_pred Ecc
Q 007512 285 NVA 287 (600)
Q Consensus 285 Nva 287 (600)
-|.
T Consensus 248 Hcl 250 (304)
T 3r7f_A 248 HPA 250 (304)
T ss_dssp CCS
T ss_pred CCC
Confidence 885
|
| >3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A* | Back alignment and structure |
|---|
Probab=96.68 E-value=0.002 Score=66.96 Aligned_cols=63 Identities=21% Similarity=0.268 Sum_probs=49.5
Q ss_pred CEEEEEecChhHHHHHHHhh-cC-CCEEE-EECCCCCh--hHHHHcC--Cc-ccCHHHHhcc--CCEEEEecC
Q 007512 198 KTLAVLGFGKVGSEVARRAK-GL-GMHVI-AHDPYAPA--DRARAIG--VD-LVSFDEAIAT--ADFISLHMP 260 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~-~~-g~~V~-~~d~~~~~--~~a~~~g--~~-~~~l~ell~~--aDvV~l~~P 260 (600)
.+|||||+|.||+..++.++ .. ++++. ++|++... ..+.+.| .. +.++++++++ +|+|++|+|
T Consensus 3 ~rigiIG~G~~g~~~~~~l~~~~~~~~l~av~d~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~D~V~i~tp 75 (344)
T 3mz0_A 3 LRIGVIGTGAIGKEHINRITNKLSGAEIVAVTDVNQEAAQKVVEQYQLNATVYPNDDSLLADENVDAVLVTSW 75 (344)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTCSSEEEEEEECSSHHHHHHHHHHTTCCCEEESSHHHHHHCTTCCEEEECSC
T ss_pred EEEEEECccHHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHHhCCCCeeeCCHHHHhcCCCCCEEEECCC
Confidence 47999999999999999998 54 78877 57887632 3345567 33 4589999976 999999999
|
| >3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V} | Back alignment and structure |
|---|
Probab=96.67 E-value=0.0017 Score=67.16 Aligned_cols=64 Identities=13% Similarity=0.081 Sum_probs=48.7
Q ss_pred CEEEEEecChhHHHHHHHhhcC-CCEEE-EECCCCC--hhHHHHcCCc--ccCHHHHhc--cCCEEEEecCC
Q 007512 198 KTLAVLGFGKVGSEVARRAKGL-GMHVI-AHDPYAP--ADRARAIGVD--LVSFDEAIA--TADFISLHMPL 261 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~-g~~V~-~~d~~~~--~~~a~~~g~~--~~~l~ell~--~aDvV~l~~Pl 261 (600)
.++||||+|.||+..++.++.. ++++. ++|++.. ...+.+.|+. +.++++++. ++|+|++|+|.
T Consensus 6 ~rigiiG~G~ig~~~~~~l~~~~~~~~~av~d~~~~~~~~~a~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~ 77 (329)
T 3evn_A 6 VRYGVVSTAKVAPRFIEGVRLAGNGEVVAVSSRTLESAQAFANKYHLPKAYDKLEDMLADESIDVIYVATIN 77 (329)
T ss_dssp EEEEEEBCCTTHHHHHHHHHHHCSEEEEEEECSCSSTTCC---CCCCSCEESCHHHHHTCTTCCEEEECSCG
T ss_pred eEEEEEechHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEECCCc
Confidence 4899999999999999998855 67766 4688763 2334556764 458999998 79999999993
|
| >1dxh_A Ornithine carbamoyltransferase; transcarbamylase; 2.50A {Pseudomonas aeruginosa} SCOP: c.78.1.1 c.78.1.1 PDB: 1ort_A | Back alignment and structure |
|---|
Probab=96.66 E-value=0.013 Score=61.04 Aligned_cols=127 Identities=20% Similarity=0.179 Sum_probs=87.7
Q ss_pred HhCCceeecCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCccccccccceeccCCEEEEEecC--hhHHHHHHHhhc
Q 007512 141 TEFGCLVVNAPTANTVAAAEHGIALLAAMARNVAQADASVKAGKWQRNKYVGVSLVGKTLAVLGFG--KVGSEVARRAKG 218 (600)
Q Consensus 141 ~~~GI~V~n~p~~~~~~vAE~~l~lll~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktiGIIGlG--~IG~~vA~~l~~ 218 (600)
...+|+|+|+-+...-++ .+++=++.+.++ .|..+.|.+|+++|=| ++..+++..+..
T Consensus 119 ~~s~vPVINa~~~~~HPt--Q~LaDl~Ti~e~------------------~g~~l~gl~va~vGD~~~~va~Sl~~~~~~ 178 (335)
T 1dxh_A 119 KFAGVPVFNGLTDEYHPT--QMLADVLTMREH------------------SDKPLHDISYAYLGDARNNMGNSLLLIGAK 178 (335)
T ss_dssp HHSSSCEEEEECSSCCHH--HHHHHHHHHHHT------------------CSSCGGGCEEEEESCCSSHHHHHHHHHHHH
T ss_pred HhCCCCEEcCCCCCCCcH--HHHHHHHHHHHH------------------cCCCcCCeEEEEecCCccchHHHHHHHHHH
Confidence 345789999766544443 334444444331 2325889999999996 999999999999
Q ss_pred CCCEEEEECCCC---ChhH-------HHHcCCc---ccCHHHHhccCCEEEEecCC--C------cc-----ccccccHh
Q 007512 219 LGMHVIAHDPYA---PADR-------ARAIGVD---LVSFDEAIATADFISLHMPL--T------PA-----TSKVLNDE 272 (600)
Q Consensus 219 ~g~~V~~~d~~~---~~~~-------a~~~g~~---~~~l~ell~~aDvV~l~~Pl--~------~~-----t~~li~~~ 272 (600)
+|++|....|.. +.+. +++.|.. ..++++.+++||+|..-.=. . .+ ...-++.+
T Consensus 179 ~G~~v~~~~P~~~~p~~~~~~~~~~~a~~~G~~v~~~~d~~eav~~aDvvytd~w~smg~~~e~~~er~~~~~~y~v~~~ 258 (335)
T 1dxh_A 179 LGMDVRIAAPKALWPHDEFVAQCKKFAEESGAKLTLTEDPKEAVKGVDFVHTDVWVSMGEPVEAWGERIKELLPYQVNME 258 (335)
T ss_dssp TTCEEEEECCGGGSCCHHHHHHHHHHHHHHTCEEEEESCHHHHTTTCSEEEECCCSCSSSCGGGCHHHHHHHGGGCBCHH
T ss_pred cCCEEEEECCcccCCCHHHHHHHHHHHHHcCCeEEEEeCHHHHhCCCCEEEeCCccccCccchhhHHHHHHhhcceeCHH
Confidence 999999988754 2211 2255643 34899999999999883321 1 00 12456888
Q ss_pred HhccC-CCceEEEEcc
Q 007512 273 TFGKM-KKGVRIINVA 287 (600)
Q Consensus 273 ~l~~m-k~gailvNva 287 (600)
.++.+ ||+++|.-|.
T Consensus 259 ll~~a~~~~ai~mHcL 274 (335)
T 1dxh_A 259 IMKATGNPRAKFMHCL 274 (335)
T ss_dssp HHHTTCCSSCEEEECS
T ss_pred HHHhccCCCeEEECCC
Confidence 88888 9999999986
|
| >1iuk_A Hypothetical protein TT1466; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.2.1.8 PDB: 1iul_A | Back alignment and structure |
|---|
Probab=96.66 E-value=0.003 Score=57.43 Aligned_cols=100 Identities=21% Similarity=0.319 Sum_probs=68.4
Q ss_pred cCCEEEEEec----ChhHHHHHHHhhcCCCEEEEECCCCChhHHHHcCCccc-CHHHHhccCCEEEEecCCCcccccccc
Q 007512 196 VGKTLAVLGF----GKVGSEVARRAKGLGMHVIAHDPYAPADRARAIGVDLV-SFDEAIATADFISLHMPLTPATSKVLN 270 (600)
Q Consensus 196 ~gktiGIIGl----G~IG~~vA~~l~~~g~~V~~~d~~~~~~~a~~~g~~~~-~l~ell~~aDvV~l~~Pl~~~t~~li~ 270 (600)
.-++|+|||. |++|..+++.++..|++|+..+|..... .-.|+... +++++-...|++++++|. +....+++
T Consensus 12 ~p~~vaVvGas~~~g~~G~~~~~~l~~~G~~v~~vnp~~~~~--~i~G~~~~~sl~el~~~vDlavi~vp~-~~~~~v~~ 88 (140)
T 1iuk_A 12 QAKTIAVLGAHKDPSRPAHYVPRYLREQGYRVLPVNPRFQGE--ELFGEEAVASLLDLKEPVDILDVFRPP-SALMDHLP 88 (140)
T ss_dssp HCCEEEEETCCSSTTSHHHHHHHHHHHTTCEEEEECGGGTTS--EETTEECBSSGGGCCSCCSEEEECSCH-HHHTTTHH
T ss_pred CCCEEEEECCCCCCCChHHHHHHHHHHCCCEEEEeCCCcccC--cCCCEEecCCHHHCCCCCCEEEEEeCH-HHHHHHHH
Confidence 3578999999 8999999999999999988888762111 11366544 799988899999999995 55666664
Q ss_pred HhHhccCCCceEEEEccCCccccHHHHHHhHhcC
Q 007512 271 DETFGKMKKGVRIINVARGGVIDEEALVRALDSG 304 (600)
Q Consensus 271 ~~~l~~mk~gailvNvarg~ivde~aL~~aL~~g 304 (600)
+ ..+ ...+.++++.+- . ++++.+..++.
T Consensus 89 ~-~~~-~gi~~i~~~~g~---~-~~~~~~~a~~~ 116 (140)
T 1iuk_A 89 E-VLA-LRPGLVWLQSGI---R-HPEFEKALKEA 116 (140)
T ss_dssp H-HHH-HCCSCEEECTTC---C-CHHHHHHHHHT
T ss_pred H-HHH-cCCCEEEEcCCc---C-HHHHHHHHHHc
Confidence 3 333 333456665432 2 35555555554
|
| >3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A* | Back alignment and structure |
|---|
Probab=96.63 E-value=0.0016 Score=68.08 Aligned_cols=65 Identities=9% Similarity=0.082 Sum_probs=50.6
Q ss_pred cCCEEEEEecChhHH-HHHHHhhcC-CCEEE-EECCCCC--hhHHHHcCCcc-cCHHHHhc--cCCEEEEecC
Q 007512 196 VGKTLAVLGFGKVGS-EVARRAKGL-GMHVI-AHDPYAP--ADRARAIGVDL-VSFDEAIA--TADFISLHMP 260 (600)
Q Consensus 196 ~gktiGIIGlG~IG~-~vA~~l~~~-g~~V~-~~d~~~~--~~~a~~~g~~~-~~l~ell~--~aDvV~l~~P 260 (600)
.-.+|||||+|.||+ .+++.++.. ++++. ++|++.. ...+.+.|+.. .+++++++ +.|+|++|+|
T Consensus 26 ~~~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~g~~~~~~~~~ll~~~~~D~V~i~tp 98 (350)
T 3rc1_A 26 NPIRVGVIGCADIAWRRALPALEAEPLTEVTAIASRRWDRAKRFTERFGGEPVEGYPALLERDDVDAVYVPLP 98 (350)
T ss_dssp CCEEEEEESCCHHHHHTHHHHHHHCTTEEEEEEEESSHHHHHHHHHHHCSEEEESHHHHHTCTTCSEEEECCC
T ss_pred CceEEEEEcCcHHHHHHHHHHHHhCCCeEEEEEEcCCHHHHHHHHHHcCCCCcCCHHHHhcCCCCCEEEECCC
Confidence 346899999999998 789998876 78887 5787652 23345567754 58999997 5899999999
|
| >4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea} | Back alignment and structure |
|---|
Probab=96.62 E-value=0.004 Score=67.50 Aligned_cols=101 Identities=20% Similarity=0.287 Sum_probs=72.6
Q ss_pred ceeccCCEEEEEecC----------hhHHHHHHHhhcCCCEEEEECCCCChhHHHHc-CCccc-CHHHHhccCCEEEEec
Q 007512 192 GVSLVGKTLAVLGFG----------KVGSEVARRAKGLGMHVIAHDPYAPADRARAI-GVDLV-SFDEAIATADFISLHM 259 (600)
Q Consensus 192 g~~l~gktiGIIGlG----------~IG~~vA~~l~~~g~~V~~~d~~~~~~~a~~~-g~~~~-~l~ell~~aDvV~l~~ 259 (600)
+..+.|++|+|+|+. .-...+++.|...|.+|.+|||+...+..... ++.+. ++++.++.||+|++++
T Consensus 317 ~~~~~~~~v~vlGlafK~~~dD~ReSp~~~i~~~L~~~g~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~ad~vvi~t 396 (446)
T 4a7p_A 317 GGDVRGKTVGILGLTFKPNTDDMRDAPSLSIIAALQDAGATVKAYDPEGVEQASKMLTDVEFVENPYAAADGADALVIVT 396 (446)
T ss_dssp TSCCTTCEEEEECCSSSTTSCCCTTCSHHHHHHHHHHTSCEEEEECSSCHHHHGGGCSSCCBCSCHHHHHTTBSEEEECS
T ss_pred cccCCCCEEEEEEEEeCCCCcccccChHHHHHHHHHHCCCEEEEECCCCCHhHHHhcCCceEecChhHHhcCCCEEEEee
Confidence 557899999999997 56789999999999999999999843222222 55544 6889999999999998
Q ss_pred CCCccccccccHhHh-ccCCCceEEEEccCCccccHHHH
Q 007512 260 PLTPATSKVLNDETF-GKMKKGVRIINVARGGVIDEEAL 297 (600)
Q Consensus 260 Pl~~~t~~li~~~~l-~~mk~gailvNvarg~ivde~aL 297 (600)
+-.+ -+. ++-..+ ..|+ +.+|+|+ |+ +.+.+.+
T Consensus 397 ~~~~-f~~-~d~~~~~~~~~-~~~i~D~-r~-~~~~~~~ 430 (446)
T 4a7p_A 397 EWDA-FRA-LDLTRIKNSLK-SPVLVDL-RN-IYPPAEL 430 (446)
T ss_dssp CCTT-TTS-CCHHHHHTTBS-SCBEECS-SC-CSCHHHH
T ss_pred CCHH-hhc-CCHHHHHHhcC-CCEEEEC-CC-CCCHHHH
Confidence 8433 222 344444 4465 4689995 54 3466554
|
| >1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A* | Back alignment and structure |
|---|
Probab=96.61 E-value=0.0037 Score=64.81 Aligned_cols=62 Identities=16% Similarity=0.239 Sum_probs=46.5
Q ss_pred CEEEEEecChhHHHHHHHhhcCCC-EEEEECCCCChhHH--H--H-----c--C--Ccc-cCHHHHhccCCEEEEecC
Q 007512 198 KTLAVLGFGKVGSEVARRAKGLGM-HVIAHDPYAPADRA--R--A-----I--G--VDL-VSFDEAIATADFISLHMP 260 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~g~-~V~~~d~~~~~~~a--~--~-----~--g--~~~-~~l~ell~~aDvV~l~~P 260 (600)
++|+|||.|.+|..+|..+...|+ +|..||........ . + . . +.. .++ +.+++||+|+++++
T Consensus 5 ~kI~VIGaG~vG~~ia~~la~~g~~~v~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t~d~-~al~~aD~Vi~a~g 81 (322)
T 1t2d_A 5 AKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSNTY-DDLAGADVVIVTAG 81 (322)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEECCG-GGGTTCSEEEECCS
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhhhhcCCCcEEEECCCH-HHhCCCCEEEEeCC
Confidence 589999999999999999987777 89999987632111 0 0 1 1 122 356 77999999999993
|
| >2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=96.60 E-value=0.0049 Score=64.03 Aligned_cols=63 Identities=17% Similarity=0.257 Sum_probs=47.4
Q ss_pred CCEEEEEecChhHHHHHHHhhcCCC-EEEEECCCCChhHH--HH-------c--C--Ccc-cCHHHHhccCCEEEEecC
Q 007512 197 GKTLAVLGFGKVGSEVARRAKGLGM-HVIAHDPYAPADRA--RA-------I--G--VDL-VSFDEAIATADFISLHMP 260 (600)
Q Consensus 197 gktiGIIGlG~IG~~vA~~l~~~g~-~V~~~d~~~~~~~a--~~-------~--g--~~~-~~l~ell~~aDvV~l~~P 260 (600)
.++|+|||.|.+|..+|..+...|+ +|..||........ .. . . +.. .++ +.+++||+|+++++
T Consensus 14 ~~kI~ViGaG~vG~~iA~~la~~g~~~V~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t~d~-~al~~aD~VI~avg 91 (328)
T 2hjr_A 14 RKKISIIGAGQIGSTIALLLGQKDLGDVYMFDIIEGVPQGKALDLNHCMALIGSPAKIFGENNY-EYLQNSDVVIITAG 91 (328)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEEESCG-GGGTTCSEEEECCS
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhHhhccCCCCEEEECCCH-HHHCCCCEEEEcCC
Confidence 3699999999999999999988787 99999987632211 00 0 1 122 356 78999999999994
|
| >3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium} | Back alignment and structure |
|---|
Probab=96.58 E-value=0.0037 Score=61.48 Aligned_cols=90 Identities=17% Similarity=0.197 Sum_probs=63.0
Q ss_pred ceeccCCEEEEEecChhHHHHHHHhhcCCCEEEEECCCCChhH---HHHcCCccc--C-HHHHhccCCEEEEecCCCccc
Q 007512 192 GVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPADR---ARAIGVDLV--S-FDEAIATADFISLHMPLTPAT 265 (600)
Q Consensus 192 g~~l~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~~~~---a~~~g~~~~--~-l~ell~~aDvV~l~~Pl~~~t 265 (600)
...+.|+++.|||.|.+|...++.|...|.+|.+++|....+. +.+.++.+. . -++.+..+|+|+.++...+
T Consensus 26 fl~L~gk~VLVVGgG~va~~ka~~Ll~~GA~VtVvap~~~~~l~~l~~~~~i~~i~~~~~~~dL~~adLVIaAT~d~~-- 103 (223)
T 3dfz_A 26 MLDLKGRSVLVVGGGTIATRRIKGFLQEGAAITVVAPTVSAEINEWEAKGQLRVKRKKVGEEDLLNVFFIVVATNDQA-- 103 (223)
T ss_dssp EECCTTCCEEEECCSHHHHHHHHHHGGGCCCEEEECSSCCHHHHHHHHTTSCEEECSCCCGGGSSSCSEEEECCCCTH--
T ss_pred EEEcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHcCCcEEEECCCCHhHhCCCCEEEECCCCHH--
Confidence 3589999999999999999999999999999999999875432 222234332 1 2356788999987765332
Q ss_pred cccccHhHhccCCCceEEEEcc
Q 007512 266 SKVLNDETFGKMKKGVRIINVA 287 (600)
Q Consensus 266 ~~li~~~~l~~mk~gailvNva 287 (600)
+|.......+ -.++||+.
T Consensus 104 ---~N~~I~~~ak-~gi~VNvv 121 (223)
T 3dfz_A 104 ---VNKFVKQHIK-NDQLVNMA 121 (223)
T ss_dssp ---HHHHHHHHSC-TTCEEEC-
T ss_pred ---HHHHHHHHHh-CCCEEEEe
Confidence 3444444455 45778864
|
| >3c1a_A Putative oxidoreductase; ZP_00056571.1, oxidoreductase FAM binding rossmann fold, structural genomics; HET: MSE PG4 PGE; 1.85A {Magnetospirillum magnetotacticum} | Back alignment and structure |
|---|
Probab=96.57 E-value=0.001 Score=68.31 Aligned_cols=62 Identities=16% Similarity=0.300 Sum_probs=46.4
Q ss_pred CEEEEEecChhHHHHHHHhhcC-CCEEE-EECCCCChhHHHHcC--Cc-ccCHHHHhc--cCCEEEEecCC
Q 007512 198 KTLAVLGFGKVGSEVARRAKGL-GMHVI-AHDPYAPADRARAIG--VD-LVSFDEAIA--TADFISLHMPL 261 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~-g~~V~-~~d~~~~~~~a~~~g--~~-~~~l~ell~--~aDvV~l~~Pl 261 (600)
.+|||||+|.||+.+++.++.. +++++ ++|++.. .+.+.. +. +.+++++++ ++|+|++|+|.
T Consensus 11 ~~igiIG~G~~g~~~~~~l~~~~~~~~v~v~d~~~~--~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~tp~ 79 (315)
T 3c1a_A 11 VRLALIGAGRWGKNYIRTIAGLPGAALVRLASSNPD--NLALVPPGCVIESDWRSVVSAPEVEAVIIATPP 79 (315)
T ss_dssp EEEEEEECTTTTTTHHHHHHHCTTEEEEEEEESCHH--HHTTCCTTCEEESSTHHHHTCTTCCEEEEESCG
T ss_pred ceEEEECCcHHHHHHHHHHHhCCCcEEEEEEeCCHH--HHHHHHhhCcccCCHHHHhhCCCCCEEEEeCCh
Confidence 4799999999999999999875 67765 6887642 222111 33 347899985 79999999993
|
| >3csu_A Protein (aspartate carbamoyltransferase); transferase (carbamoyl-P; 1.88A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1r0b_A* 1q95_A* 1raa_A* 1rab_A* 1rac_A* 1rad_A* 1rae_A* 1raf_A* 1rag_A* 1rah_A* 1rai_A* 1r0c_A* 1za2_A* 1za1_A* 2fzc_A* 2fzg_A* 2fzk_A* 2h3e_A* 2ipo_A* 2qg9_A ... | Back alignment and structure |
|---|
Probab=96.57 E-value=0.015 Score=59.96 Aligned_cols=123 Identities=18% Similarity=0.230 Sum_probs=83.5
Q ss_pred CceeecCCC-CChHHHHHHHHHHHHHHHhchHHHHHHHHcCccccccccceeccCCEEEEEec---ChhHHHHHHHhhcC
Q 007512 144 GCLVVNAPT-ANTVAAAEHGIALLAAMARNVAQADASVKAGKWQRNKYVGVSLVGKTLAVLGF---GKVGSEVARRAKGL 219 (600)
Q Consensus 144 GI~V~n~p~-~~~~~vAE~~l~lll~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktiGIIGl---G~IG~~vA~~l~~~ 219 (600)
+|+|+|+-. ...-++ .+++=++.+.+++ | .+.|.+|+++|= |++..+++..+..+
T Consensus 121 ~vPVINag~G~~~HPt--QaLaDl~Ti~e~~------------------g-~l~gl~va~vGD~~~~rva~Sl~~~~~~~ 179 (310)
T 3csu_A 121 NVPVLNAGDGSNQHPT--QTLLDLFTIQETQ------------------G-RLDNLHVAMVGDLKYGRTVHSLTQALAKF 179 (310)
T ss_dssp TCCEEEEEETTSCCHH--HHHHHHHHHHHHH------------------S-CSSSCEEEEESCTTTCHHHHHHHHHHHTS
T ss_pred CCCEEcCccCCCCCch--HHHHHHHHHHHHh------------------C-CcCCcEEEEECCCCCCchHHHHHHHHHhC
Confidence 689999753 444333 3333344443311 2 478999999998 59999999999999
Q ss_pred -CCEEEEECCCC--C-h---hHHHHcCCcc---cCHHHHhccCCEEEEecCCCc----cc------cccccHhHhccCCC
Q 007512 220 -GMHVIAHDPYA--P-A---DRARAIGVDL---VSFDEAIATADFISLHMPLTP----AT------SKVLNDETFGKMKK 279 (600)
Q Consensus 220 -g~~V~~~d~~~--~-~---~~a~~~g~~~---~~l~ell~~aDvV~l~~Pl~~----~t------~~li~~~~l~~mk~ 279 (600)
|++|....|.. + . +.+++.|... .++++++++||+|..-.=-.+ +. ..-++.+.++.+||
T Consensus 180 ~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~d~~eav~~aDvvyt~~~q~er~~~~~~~~~~~~y~v~~~ll~~a~~ 259 (310)
T 3csu_A 180 DGNRFYFIAPDALAMPQYILDMLDEKGIAWSLHSSIEEVMAEVDILYMTRVQKERLDPSEYANVKAQFVLRASDLHNAKA 259 (310)
T ss_dssp SSCEEEEECCGGGCCCHHHHHHHHHTTCCEEECSCGGGTTTTCSEEEECC-----------------CCBCGGGGTTCCT
T ss_pred CCCEEEEECCcccccCHHHHHHHHHcCCeEEEEcCHHHHhcCCCEEEECCccccccCHHHHHHHhhccCCCHHHHhhcCC
Confidence 99999988753 2 2 2234456542 479999999999987543111 00 24568888888888
Q ss_pred ceEEEEcc
Q 007512 280 GVRIINVA 287 (600)
Q Consensus 280 gailvNva 287 (600)
+++|.-|.
T Consensus 260 ~ai~mH~l 267 (310)
T 3csu_A 260 NMKVLHPL 267 (310)
T ss_dssp TCEEECCS
T ss_pred CCEEECCC
Confidence 99888886
|
| >3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=96.56 E-value=0.0031 Score=66.04 Aligned_cols=64 Identities=17% Similarity=0.324 Sum_probs=50.6
Q ss_pred CCEEEEEecChhHHHHHHHhh-cC-CCEEE-EECCCCCh--hHHHHcC--Cc-ccCHHHHhc--cCCEEEEecC
Q 007512 197 GKTLAVLGFGKVGSEVARRAK-GL-GMHVI-AHDPYAPA--DRARAIG--VD-LVSFDEAIA--TADFISLHMP 260 (600)
Q Consensus 197 gktiGIIGlG~IG~~vA~~l~-~~-g~~V~-~~d~~~~~--~~a~~~g--~~-~~~l~ell~--~aDvV~l~~P 260 (600)
-.+|||||+|.||+..++.++ .. ++++. ++|++... ..+.+.| .. +.++++++. +.|+|++|+|
T Consensus 23 ~~rvgiIG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~g~~~~~~~~~~~ll~~~~~D~V~i~tp 96 (357)
T 3ec7_A 23 TLKAGIVGIGMIGSDHLRRLANTVSGVEVVAVCDIVAGRAQAALDKYAIEAKDYNDYHDLINDKDVEVVIITAS 96 (357)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTCTTEEEEEEECSSTTHHHHHHHHHTCCCEEESSHHHHHHCTTCCEEEECSC
T ss_pred eeeEEEECCcHHHHHHHHHHHhhCCCcEEEEEEeCCHHHHHHHHHHhCCCCeeeCCHHHHhcCCCCCEEEEcCC
Confidence 458999999999999999998 54 78877 58988743 3345567 33 458999987 4899999999
|
| >1duv_G Octase-1, ornithine transcarbamoylase; enzyme-inhibitor complex, transferase; HET: PSQ; 1.70A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1akm_A* 2otc_A* | Back alignment and structure |
|---|
Probab=96.53 E-value=0.014 Score=60.77 Aligned_cols=127 Identities=19% Similarity=0.167 Sum_probs=87.9
Q ss_pred hCCceeecCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCccccccccceeccCCEEEEEecC--hhHHHHHHHhhcC
Q 007512 142 EFGCLVVNAPTANTVAAAEHGIALLAAMARNVAQADASVKAGKWQRNKYVGVSLVGKTLAVLGFG--KVGSEVARRAKGL 219 (600)
Q Consensus 142 ~~GI~V~n~p~~~~~~vAE~~l~lll~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktiGIIGlG--~IG~~vA~~l~~~ 219 (600)
..+|+|+|+-+...-++ .+++=++.+.+++ .|..+.|.+|++||=| ++..+++..+..+
T Consensus 119 ~~~vPVINa~~~~~HPt--Q~LaDl~Ti~e~~-----------------~g~~l~gl~ia~vGD~~~~va~Sl~~~~~~~ 179 (333)
T 1duv_G 119 YASVPVWNGLTNEFHPT--QLLADLLTMQEHL-----------------PGKAFNEMTLVYAGDARNNMGNSMLEAAALT 179 (333)
T ss_dssp HHSSCEEESCCSSCCHH--HHHHHHHHHHHHS-----------------TTCCGGGCEEEEESCTTSHHHHHHHHHHHHH
T ss_pred hCCCCeEcCCCCCCCch--HHHHHHHHHHHHh-----------------cCCCCCCcEEEEECCCccchHHHHHHHHHHc
Confidence 34689999776554444 3444444444420 1335789999999986 9999999999999
Q ss_pred CCEEEEECCCC---ChhH-------HHHcCCc---ccCHHHHhccCCEEEEecCC--Cc------c-----ccccccHhH
Q 007512 220 GMHVIAHDPYA---PADR-------ARAIGVD---LVSFDEAIATADFISLHMPL--TP------A-----TSKVLNDET 273 (600)
Q Consensus 220 g~~V~~~d~~~---~~~~-------a~~~g~~---~~~l~ell~~aDvV~l~~Pl--~~------~-----t~~li~~~~ 273 (600)
|++|....|.. +.+. +.+.|.. ..++++.+++||+|..-.=. .. + ...-++.+.
T Consensus 180 G~~v~~~~P~~~~p~~~~~~~~~~~a~~~G~~v~~~~d~~eav~~aDvvytd~w~smg~~~~~~~er~~~~~~y~v~~~l 259 (333)
T 1duv_G 180 GLDLRLVAPQACWPEAALVTECRALAQQNGGNITLTEDVAKGVEGADFIYTDVWVSMGEAKEKWAERIALLREYQVNSKM 259 (333)
T ss_dssp CCEEEEECCGGGCCCHHHHHHHHHHHHHTTCEEEEESCHHHHHTTCSEEEECCSSCTTSCTTHHHHHHHHHGGGCBCHHH
T ss_pred CCEEEEECCcccCCCHHHHHHHHHHHHHcCCeEEEEECHHHHhCCCCEEEeCCccccCccccchHHHHHHhhccccCHHH
Confidence 99999988753 2211 2256643 34899999999999883321 10 0 124578888
Q ss_pred hccC-CCceEEEEcc
Q 007512 274 FGKM-KKGVRIINVA 287 (600)
Q Consensus 274 l~~m-k~gailvNva 287 (600)
++.+ ||+++|.-|.
T Consensus 260 l~~a~~~~ai~mHcL 274 (333)
T 1duv_G 260 MQLTGNPEVKFLHCL 274 (333)
T ss_dssp HHTTCCTTCEEEECS
T ss_pred HHhccCCCcEEECCC
Confidence 8888 9999999986
|
| >1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B* | Back alignment and structure |
|---|
Probab=96.51 E-value=0.0016 Score=65.06 Aligned_cols=97 Identities=16% Similarity=0.219 Sum_probs=62.4
Q ss_pred HHHHHHcCccccccccceeccCCEEEEEecChhHHHHHHHhhcCCC-EEEEECCCC-------------------ChhH-
Q 007512 176 ADASVKAGKWQRNKYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGM-HVIAHDPYA-------------------PADR- 234 (600)
Q Consensus 176 ~~~~~~~g~W~~~~~~g~~l~gktiGIIGlG~IG~~vA~~l~~~g~-~V~~~d~~~-------------------~~~~- 234 (600)
+.++++-.+|... ....|.+++|.|||+|.+|..+|+.|...|. ++..+|+.. +...
T Consensus 12 y~Rq~~l~~~g~~--~q~~l~~~~VlVvG~Gg~G~~va~~La~~Gv~~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~ 89 (249)
T 1jw9_B 12 YNRQIILRGFDFD--GQEALKDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVES 89 (249)
T ss_dssp THHHHTSTTTHHH--HHHHHHHCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHH
T ss_pred hhheecccccCHH--HHHHHhCCeEEEEeeCHHHHHHHHHHHHcCCCeEEEEcCCCcccccCCcccccChhhcCcHHHHH
Confidence 3444444456432 1246899999999999999999999998886 899998765 1111
Q ss_pred H----HHc--CCc--c----c---CHHHHhccCCEEEEecCCCccccccccHhHhc
Q 007512 235 A----RAI--GVD--L----V---SFDEAIATADFISLHMPLTPATSKVLNDETFG 275 (600)
Q Consensus 235 a----~~~--g~~--~----~---~l~ell~~aDvV~l~~Pl~~~t~~li~~~~l~ 275 (600)
+ .+. .+. . . ++++++.++|+|+.+++ +.+++.++++....
T Consensus 90 ~~~~l~~~np~~~v~~~~~~~~~~~~~~~~~~~DvVi~~~d-~~~~~~~l~~~~~~ 144 (249)
T 1jw9_B 90 ARDALTRINPHIAITPVNALLDDAELAALIAEHDLVLDCTD-NVAVRNQLNAGCFA 144 (249)
T ss_dssp HHHHHHHHCTTSEEEEECSCCCHHHHHHHHHTSSEEEECCS-SHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCcEEEEEeccCCHhHHHHHHhCCCEEEEeCC-CHHHHHHHHHHHHH
Confidence 1 111 111 1 1 24556778888888876 45566666655443
|
| >4amu_A Ornithine carbamoyltransferase, catabolic; ornithine transcarbamoylase, hydrolase; 2.50A {Mycoplasma penetrans} PDB: 4anf_A | Back alignment and structure |
|---|
Probab=96.51 E-value=0.015 Score=61.08 Aligned_cols=127 Identities=21% Similarity=0.165 Sum_probs=85.8
Q ss_pred HHhCCceeecCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCccccccccceeccCCEEEEEecC--hhHHHHHHHhh
Q 007512 140 ATEFGCLVVNAPTANTVAAAEHGIALLAAMARNVAQADASVKAGKWQRNKYVGVSLVGKTLAVLGFG--KVGSEVARRAK 217 (600)
Q Consensus 140 a~~~GI~V~n~p~~~~~~vAE~~l~lll~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktiGIIGlG--~IG~~vA~~l~ 217 (600)
|...+|+|+|+-+...-++ .+++=++.+.++ .| .+.|++|++||=| ++..+++..+.
T Consensus 144 A~~s~vPVINa~~~~~HPt--QaLaDl~Ti~E~------------------~G-~l~glkva~vGD~~nnva~Sl~~~~~ 202 (365)
T 4amu_A 144 VKYSGVPVWNGLTDDEHPT--QIIADFMTMKEK------------------FG-NLKNKKIVFIGDYKNNVGVSTMIGAA 202 (365)
T ss_dssp HHHHCSCEEEEECSSCCHH--HHHHHHHHHHHH------------------HS-SCTTCEEEEESSTTSHHHHHHHHHHH
T ss_pred HHhCCCCEEeCCCCCCCcH--HHHHHHHHHHHH------------------hC-CCCCCEEEEECCCCcchHHHHHHHHH
Confidence 4445789999865444333 233333333331 12 3789999999988 78999999999
Q ss_pred cCCCEEEEECCCC--C---hh-------HHHHcCCc---ccCHHHHhccCCEEEEec--CCCcc-----------ccccc
Q 007512 218 GLGMHVIAHDPYA--P---AD-------RARAIGVD---LVSFDEAIATADFISLHM--PLTPA-----------TSKVL 269 (600)
Q Consensus 218 ~~g~~V~~~d~~~--~---~~-------~a~~~g~~---~~~l~ell~~aDvV~l~~--Pl~~~-----------t~~li 269 (600)
.+|++|....|.. + .+ .+.+.|.. ..++++++++||+|..-+ ...++ ...-+
T Consensus 203 ~lG~~v~~~~P~~~~p~~~~~~~~~~~~~~~~~g~~i~~~~d~~eav~~aDVVytd~W~smg~~~~~~~er~~~~~~y~v 282 (365)
T 4amu_A 203 FNGMHVVMCGPDNYKNEIDKNVLAKCIELFKRNGGSLRFSTDKILAAQDADVIYTDVWVSLGEPFELFDKRIGELKNFQV 282 (365)
T ss_dssp HTTCEEEEESCGGGGGGSCHHHHHHHHHHHHHHSCEEEEESCHHHHTTTCSEEEECCSCCTTCCHHHHHHHHHHHTTCCB
T ss_pred HcCCEEEEECCccccCCCcHHHHHHHHHHHHHcCCEEEEECCHHHHhcCCCEEEecccccCCchhhhHHHHHHHhccccc
Confidence 9999999988753 2 11 12345643 248999999999998732 11211 02447
Q ss_pred cHhHhccCCCceEEEEcc
Q 007512 270 NDETFGKMKKGVRIINVA 287 (600)
Q Consensus 270 ~~~~l~~mk~gailvNva 287 (600)
+.+.++.+||+++|.-|.
T Consensus 283 t~ell~~a~~dai~MHcL 300 (365)
T 4amu_A 283 DMNMIKAAKNDVIFLHCL 300 (365)
T ss_dssp CHHHHHHSCTTCEEEECS
T ss_pred CHHHHHhcCCCcEEECCC
Confidence 888888889999999886
|
| >1f06_A MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH-inhibitor ternary complex, oxidoreductase; HET: NDP 2NP; 2.10A {Corynebacterium glutamicum} SCOP: c.2.1.3 d.81.1.3 PDB: 1dap_A* 2dap_A* 3dap_A* | Back alignment and structure |
|---|
Probab=96.50 E-value=0.0032 Score=65.11 Aligned_cols=99 Identities=16% Similarity=0.182 Sum_probs=63.6
Q ss_pred CEEEEEecChhHHHHHHHhhcC-CCEEE-EECCCCChhHHHHcCCc-ccCHHHHhccCCEEEEecCCCccccccccHhHh
Q 007512 198 KTLAVLGFGKVGSEVARRAKGL-GMHVI-AHDPYAPADRARAIGVD-LVSFDEAIATADFISLHMPLTPATSKVLNDETF 274 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~-g~~V~-~~d~~~~~~~a~~~g~~-~~~l~ell~~aDvV~l~~Pl~~~t~~li~~~~l 274 (600)
.+|||||+|+||+.+++.+... ++++. ++|++.....+ .|+. +.++++++.++|+|++|+|.... -+...
T Consensus 4 irV~IiG~G~mG~~~~~~l~~~~~~elvav~d~~~~~~~~--~gv~~~~d~~~ll~~~DvViiatp~~~h-----~~~~~ 76 (320)
T 1f06_A 4 IRVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRRATLDTK--TPVFDVADVDKHADDVDVLFLCMGSATD-----IPEQA 76 (320)
T ss_dssp EEEEEECCSHHHHHHHHHHTTCSSEEEEEEEESSSCCSSS--SCEEEGGGGGGTTTTCSEEEECSCTTTH-----HHHHH
T ss_pred CEEEEEeecHHHHHHHHHHhcCCCCEEEEEEcCCHHHhhc--CCCceeCCHHHHhcCCCEEEEcCCcHHH-----HHHHH
Confidence 3799999999999999999866 68865 57877532211 4543 24678888899999999984421 12233
Q ss_pred ccCCCceEEEEccCCccc--cH-HHHHHhHhc
Q 007512 275 GKMKKGVRIINVARGGVI--DE-EALVRALDS 303 (600)
Q Consensus 275 ~~mk~gailvNvarg~iv--de-~aL~~aL~~ 303 (600)
..++.|.-++...-..+- +. +.|.++.++
T Consensus 77 ~al~aG~~Vv~ekp~~~~~~~~~~~l~~~a~~ 108 (320)
T 1f06_A 77 PKFAQFACTVDTYDNHRDIPRHRQVMNEAATA 108 (320)
T ss_dssp HHHTTTSEEECCCCCGGGHHHHHHHHHHHHHH
T ss_pred HHHHCCCEEEECCCCcCCHHHHHHHHHHHHHh
Confidence 446667766665443321 22 345554444
|
| >4f2g_A Otcase 1, ornithine carbamoyltransferase 1; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=96.49 E-value=0.016 Score=59.61 Aligned_cols=126 Identities=15% Similarity=0.122 Sum_probs=83.2
Q ss_pred HhCCceeecCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCccccccccceeccCCEEEEEec-ChhHHHHHHHhhcC
Q 007512 141 TEFGCLVVNAPTANTVAAAEHGIALLAAMARNVAQADASVKAGKWQRNKYVGVSLVGKTLAVLGF-GKVGSEVARRAKGL 219 (600)
Q Consensus 141 ~~~GI~V~n~p~~~~~~vAE~~l~lll~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktiGIIGl-G~IG~~vA~~l~~~ 219 (600)
...+|+|+|+-+...-++ .+++=++.+.++ .| .+.|.+|++||= +++..+.+..+..+
T Consensus 119 ~~~~vPVINag~~~~HPt--QaLaDl~Ti~e~------------------~g-~l~glkva~vGD~~~va~Sl~~~~~~~ 177 (309)
T 4f2g_A 119 ENSRVPVINGLTNEYHPC--QVLADIFTYYEH------------------RG-PIRGKTVAWVGDANNMLYTWIQAARIL 177 (309)
T ss_dssp HTCSSCEEEEECSSCCHH--HHHHHHHHHHHH------------------HS-CCTTCEEEEESCCCHHHHHHHHHHHHH
T ss_pred HhCCCCEEECCCCccCcH--HHHHHHHHHHHH------------------hC-CCCCCEEEEECCCcchHHHHHHHHHHc
Confidence 345788999876554443 333333333331 12 478999999985 57888898899999
Q ss_pred CCEEEEECCCC---ChhH-HHHcCCc---ccCHHHHhccCCEEEEec--CCCc----------cccccccHhHhccCCCc
Q 007512 220 GMHVIAHDPYA---PADR-ARAIGVD---LVSFDEAIATADFISLHM--PLTP----------ATSKVLNDETFGKMKKG 280 (600)
Q Consensus 220 g~~V~~~d~~~---~~~~-a~~~g~~---~~~l~ell~~aDvV~l~~--Pl~~----------~t~~li~~~~l~~mk~g 280 (600)
|++|....|.. +.+. +++.|.. ..++++.+++||+|..-+ .... -...-++.+.++.+|++
T Consensus 178 G~~v~~~~P~~~~~~~~~~~~~~g~~v~~~~d~~eav~~aDvvyt~~w~smg~e~~~~~r~~~~~~y~v~~~~l~~a~~~ 257 (309)
T 4f2g_A 178 DFKLQLSTPPGYALDAKLVDAESAPFYQVFDDPNEACKGADLVTTDVWTSMGFEAENEARKRAFADWCVDEEMMSHANSD 257 (309)
T ss_dssp TCEEEEECCGGGCCCGGGSCGGGGGGEEECSSHHHHTTTCSEEEECCC------------CCSGGGGCBCHHHHTTSCTT
T ss_pred CCEEEEECCcccCCCHHHHHHHcCCeEEEEcCHHHHhcCCCEEEecccccCcchhhHHHHHHHhcCceeCHHHHHhcCCC
Confidence 99999988743 2221 2233332 248999999999998743 0000 01245788888889999
Q ss_pred eEEEEcc
Q 007512 281 VRIINVA 287 (600)
Q Consensus 281 ailvNva 287 (600)
++|.-|.
T Consensus 258 ai~mH~l 264 (309)
T 4f2g_A 258 ALFMHCL 264 (309)
T ss_dssp CEEEECS
T ss_pred eEEECCC
Confidence 9999886
|
| >3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A* | Back alignment and structure |
|---|
Probab=96.49 E-value=0.0036 Score=64.68 Aligned_cols=98 Identities=18% Similarity=0.258 Sum_probs=63.8
Q ss_pred ceeccCCEEEEEecChhHHHHHHHhhcCCC-EEEEECCCCC-hhHHHH--------cCC--c---ccCH---HHHhccCC
Q 007512 192 GVSLVGKTLAVLGFGKVGSEVARRAKGLGM-HVIAHDPYAP-ADRARA--------IGV--D---LVSF---DEAIATAD 253 (600)
Q Consensus 192 g~~l~gktiGIIGlG~IG~~vA~~l~~~g~-~V~~~d~~~~-~~~a~~--------~g~--~---~~~l---~ell~~aD 253 (600)
+..+.||++.|+|.|.+|+.++..|...|. +|..+++... .+++++ .+. . ..++ .+.+.++|
T Consensus 143 ~~~l~gk~~lVlGAGGaaraia~~L~~~G~~~v~v~nRt~~~~~~a~~la~~~~~~~~~~v~~~~~~~l~~~~~~l~~~D 222 (312)
T 3t4e_A 143 GFDMRGKTMVLLGAGGAATAIGAQAAIEGIKEIKLFNRKDDFFEKAVAFAKRVNENTDCVVTVTDLADQHAFTEALASAD 222 (312)
T ss_dssp TCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTHHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHHCS
T ss_pred CCCcCCCEEEEECcCHHHHHHHHHHHHcCCCEEEEEECCCchHHHHHHHHHHhhhccCcceEEechHhhhhhHhhccCce
Confidence 456889999999999999999999999998 8999998732 222221 122 1 2233 55688999
Q ss_pred EEEEecCCCc--cccccccHhHhccCCCceEEEEccCCc
Q 007512 254 FISLHMPLTP--ATSKVLNDETFGKMKKGVRIINVARGG 290 (600)
Q Consensus 254 vV~l~~Pl~~--~t~~li~~~~l~~mk~gailvNvarg~ 290 (600)
+|+.++|..- .....+. .....++++.++.|+.-.+
T Consensus 223 iIINaTp~Gm~~~~~~~~~-~~~~~l~~~~~v~D~vY~P 260 (312)
T 3t4e_A 223 ILTNGTKVGMKPLENESLI-GDVSLLRPELLVTECVYNP 260 (312)
T ss_dssp EEEECSSTTSTTSTTCCSC-CCGGGSCTTCEEEECCCSS
T ss_pred EEEECCcCCCCCCCCCccc-CCHHHcCCCCEEEEeccCC
Confidence 9999999652 1111110 0112356677777765443
|
| >3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=96.48 E-value=0.0023 Score=61.95 Aligned_cols=66 Identities=12% Similarity=0.192 Sum_probs=49.0
Q ss_pred CEEEEEecChhHHHHHHHhhcCCCEEEEECCCCCh-hH-HHHcCCcc-----cC---HHHH-hccCCEEEEecCCCc
Q 007512 198 KTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPA-DR-ARAIGVDL-----VS---FDEA-IATADFISLHMPLTP 263 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~~-~~-a~~~g~~~-----~~---l~el-l~~aDvV~l~~Pl~~ 263 (600)
++|.|+|+|.+|+.+|+.|...|.+|+++|++... +. +...|+.. .+ ++++ +.+||+|++++|...
T Consensus 1 M~iiIiG~G~~G~~la~~L~~~g~~v~vid~~~~~~~~l~~~~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~d~ 77 (218)
T 3l4b_C 1 MKVIIIGGETTAYYLARSMLSRKYGVVIINKDRELCEEFAKKLKATIIHGDGSHKEILRDAEVSKNDVVVILTPRDE 77 (218)
T ss_dssp CCEEEECCHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHSSSEEEESCTTSHHHHHHHTCCTTCEEEECCSCHH
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHcCCeEEEcCCCCHHHHHhcCcccCCEEEEecCCcH
Confidence 46899999999999999999999999999987632 22 23345532 12 4443 678999999998543
|
| >3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A* | Back alignment and structure |
|---|
Probab=96.47 E-value=0.0025 Score=67.42 Aligned_cols=65 Identities=23% Similarity=0.391 Sum_probs=47.1
Q ss_pred eeccCCEEEEEecChhHHHHHHHhhcCCCEEEEECCCCChhHHHHcC----CcccC---HHHHhccCCEEEE
Q 007512 193 VSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPADRARAIG----VDLVS---FDEAIATADFISL 257 (600)
Q Consensus 193 ~~l~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~~~~a~~~g----~~~~~---l~ell~~aDvV~l 257 (600)
.-+.||||+|+|.|.+|+.+++.++.+|++|+++|++.......... ..+.+ +.++++++|+|+.
T Consensus 10 ~~~~~k~IlIlG~G~~g~~la~aa~~~G~~vi~~d~~~~~~~~~~ad~~~~~~~~d~~~l~~~~~~~dvI~~ 81 (389)
T 3q2o_A 10 IILPGKTIGIIGGGQLGRMMALAAKEMGYKIAVLDPTKNSPCAQVADIEIVASYDDLKAIQHLAEISDVVTY 81 (389)
T ss_dssp CCCTTSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSTTCTTTTTCSEEEECCTTCHHHHHHHHHTCSEEEE
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCCCchHHhCCceEecCcCCHHHHHHHHHhCCEeee
Confidence 35789999999999999999999999999999999875221110000 01222 5677888888754
|
| >3ohs_X Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; dimeric dihydrodiol dehydrogenase, MDD, oxidoreductase; 1.90A {Macaca fascicularis} PDB: 2o48_X 2poq_X* 2o4u_X | Back alignment and structure |
|---|
Probab=96.45 E-value=0.0033 Score=64.98 Aligned_cols=63 Identities=13% Similarity=0.160 Sum_probs=48.9
Q ss_pred CEEEEEecChhHHHHHHHhhcCC---CEEEE-ECCCCC--hhHHHHcCCc--ccCHHHHhc--cCCEEEEecC
Q 007512 198 KTLAVLGFGKVGSEVARRAKGLG---MHVIA-HDPYAP--ADRARAIGVD--LVSFDEAIA--TADFISLHMP 260 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~g---~~V~~-~d~~~~--~~~a~~~g~~--~~~l~ell~--~aDvV~l~~P 260 (600)
.++||||+|.||+..++.++..+ +++.+ +|++.. ...+.+.|+. +.++++++. +.|+|++|+|
T Consensus 3 ~rigiiG~G~ig~~~~~~l~~~~~~~~~l~av~d~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~vD~V~i~tp 75 (334)
T 3ohs_X 3 LRWGIVSVGLISSDFTAVLQTLPRSEHQVVAVAARDLSRAKEFAQKHDIPKAYGSYEELAKDPNVEVAYVGTQ 75 (334)
T ss_dssp EEEEEECCSHHHHHHHHHHTTSCTTTEEEEEEECSSHHHHHHHHHHHTCSCEESSHHHHHHCTTCCEEEECCC
T ss_pred cEEEEECchHHHHHHHHHHHhCCCCCeEEEEEEcCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEECCC
Confidence 48999999999999999998653 56654 787752 2344566773 458999997 6999999999
|
| >4a8t_A Putrescine carbamoyltransferase; trabnsferase PALO, delta-N-(phosphonoacetyl)-L- ornithine, agmatine deiminase route, agmatine catabolism; HET: PAO PGE; 1.59A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=96.43 E-value=0.04 Score=57.37 Aligned_cols=130 Identities=15% Similarity=0.187 Sum_probs=83.8
Q ss_pred HHHhCCceeecCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCccccccccceeccCCEEEEEec-ChhHHHHHHHhh
Q 007512 139 AATEFGCLVVNAPTANTVAAAEHGIALLAAMARNVAQADASVKAGKWQRNKYVGVSLVGKTLAVLGF-GKVGSEVARRAK 217 (600)
Q Consensus 139 aa~~~GI~V~n~p~~~~~~vAE~~l~lll~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktiGIIGl-G~IG~~vA~~l~ 217 (600)
.|...+|+|+|+-+...-++ .+++=++.+.++++ .|..+.|.+|++||= +++..+++..+.
T Consensus 135 lA~~~~vPVINag~~~~HPt--QaLaDl~Ti~e~~~----------------~G~~l~glkva~vGD~~rva~Sl~~~~~ 196 (339)
T 4a8t_A 135 LANCATIPVINGMSDYNHPT--QELGDLCTMVEHLP----------------EGKKLEDCKVVFVGDATQVCFSLGLITT 196 (339)
T ss_dssp HHHHCSSCEEECCCSSCCHH--HHHHHHHHHHHTCC----------------TTCCGGGCEEEEESSCCHHHHHHHHHHH
T ss_pred HHHhCCCCEEECCCCCcCcH--HHHHHHHHHHHHhh----------------cCCCCCCCEEEEECCCchhHHHHHHHHH
Confidence 34456799999876544333 33333444433110 033588999999986 688899999999
Q ss_pred cCCCEEEEECCCC--ChhH--------HHHcCCc---ccCHHHHhccCCEEEEec--CCCc--cc----------ccccc
Q 007512 218 GLGMHVIAHDPYA--PADR--------ARAIGVD---LVSFDEAIATADFISLHM--PLTP--AT----------SKVLN 270 (600)
Q Consensus 218 ~~g~~V~~~d~~~--~~~~--------a~~~g~~---~~~l~ell~~aDvV~l~~--Pl~~--~t----------~~li~ 270 (600)
.+|++|....|.. +.+. +.+.|.. ..+++ .+++||+|..-+ +..+ +. ..-++
T Consensus 197 ~~G~~v~~~~P~~~~~~~~~~~~~~~~a~~~g~~v~~~~d~~-av~~aDvvytd~w~smg~~~~~~~er~~~~~~~y~vt 275 (339)
T 4a8t_A 197 KMGMNFVHFGPEGFQLNEEHQAKLAKNCEVSGGSFLVTDDAS-SVEGADFLYTDVWYGLYEAELSEEERMKVFYPKYQVN 275 (339)
T ss_dssp HTTCEEEEECCTTSSCCHHHHHHHHHHHHHHCCEEEEECCGG-GGTTCSEEEECCSSCCTTSCCCHHHHHHHHTTTTCBC
T ss_pred HcCCEEEEECCcccCCCHHHHHHHHHHHHHcCCEEEEECChh-HHcCCCEEEecCcccCCchhhhhHHHHHHhccccccC
Confidence 9999999988754 2211 2344643 24788 999999998732 1111 10 14457
Q ss_pred HhHhccCCCceEEEEcc
Q 007512 271 DETFGKMKKGVRIINVA 287 (600)
Q Consensus 271 ~~~l~~mk~gailvNva 287 (600)
.+.++.+|++++|.-|.
T Consensus 276 ~ell~~ak~dai~mHcL 292 (339)
T 4a8t_A 276 QEMMDRAGANCKFMHCL 292 (339)
T ss_dssp HHHHHHHCTTCEEEECS
T ss_pred HHHHHhcCCCcEEECCC
Confidence 77777778888888775
|
| >3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A* | Back alignment and structure |
|---|
Probab=96.43 E-value=0.0058 Score=63.52 Aligned_cols=94 Identities=17% Similarity=0.115 Sum_probs=61.0
Q ss_pred CCEEEEEecChhHHHHHHHhhcCCC--EEEEECCCCChhHH----HHcC-------Ccc-cCHHHHhccCCEEEEecCCC
Q 007512 197 GKTLAVLGFGKVGSEVARRAKGLGM--HVIAHDPYAPADRA----RAIG-------VDL-VSFDEAIATADFISLHMPLT 262 (600)
Q Consensus 197 gktiGIIGlG~IG~~vA~~l~~~g~--~V~~~d~~~~~~~a----~~~g-------~~~-~~l~ell~~aDvV~l~~Pl~ 262 (600)
.++|+|||.|.||.++|..+...|+ +|..+|........ .+.+ +.. .+..+.+++||+|+++.+.
T Consensus 5 ~~kI~ViGaG~vG~~~a~~l~~~~~~~~l~l~D~~~~k~~g~a~DL~~~~~~~~~~v~i~~~~~~a~~~aDvVvi~ag~- 83 (326)
T 3pqe_A 5 VNKVALIGAGFVGSSYAFALINQGITDELVVIDVNKEKAMGDVMDLNHGKAFAPQPVKTSYGTYEDCKDADIVCICAGA- 83 (326)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHTGGGSSSCCEEEEECGGGGTTCSEEEECCSC-
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCceEEEEecchHHHHHHHHHHHhccccccCCeEEEeCcHHHhCCCCEEEEeccc-
Confidence 5689999999999999999986665 99999986422111 1111 111 1234678999999999873
Q ss_pred cccccc-----c--cH-------hHhccCCCceEEEEccCCcccc
Q 007512 263 PATSKV-----L--ND-------ETFGKMKKGVRIINVARGGVID 293 (600)
Q Consensus 263 ~~t~~l-----i--~~-------~~l~~mk~gailvNvarg~ivd 293 (600)
+...++ + |. +.+....|++++++++ ..+|
T Consensus 84 p~kpG~~R~dL~~~N~~Iv~~i~~~I~~~~p~a~vlvvt--NPvd 126 (326)
T 3pqe_A 84 NQKPGETRLELVEKNLKIFKGIVSEVMASGFDGIFLVAT--NPVD 126 (326)
T ss_dssp CCCTTCCHHHHHHHHHHHHHHHHHHHHHTTCCSEEEECS--SSHH
T ss_pred CCCCCccHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEcC--ChHH
Confidence 222222 1 11 1233356889999996 3444
|
| >4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=96.42 E-value=0.0038 Score=64.79 Aligned_cols=62 Identities=19% Similarity=0.320 Sum_probs=48.3
Q ss_pred EEEEEecChhHHH-HHHHhhcC-CCEEEE-ECCCCC--hhHHHHcCCc--ccCHHHHhc--cCCEEEEecC
Q 007512 199 TLAVLGFGKVGSE-VARRAKGL-GMHVIA-HDPYAP--ADRARAIGVD--LVSFDEAIA--TADFISLHMP 260 (600)
Q Consensus 199 tiGIIGlG~IG~~-vA~~l~~~-g~~V~~-~d~~~~--~~~a~~~g~~--~~~l~ell~--~aDvV~l~~P 260 (600)
++||||+|.||+. .+..++.. +++|.+ +|++.. .+.+.+.|+. +.+++++++ +.|+|++|+|
T Consensus 25 rigiIG~G~ig~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~g~~~~y~d~~ell~~~~iDaV~I~tP 95 (350)
T 4had_A 25 RFGIISTAKIGRDNVVPAIQDAENCVVTAIASRDLTRAREMADRFSVPHAFGSYEEMLASDVIDAVYIPLP 95 (350)
T ss_dssp EEEEESCCHHHHHTHHHHHHHCSSEEEEEEECSSHHHHHHHHHHHTCSEEESSHHHHHHCSSCSEEEECSC
T ss_pred EEEEEcChHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHcCCCeeeCCHHHHhcCCCCCEEEEeCC
Confidence 7999999999986 56777765 788875 788762 3445677874 458999985 4899999999
|
| >1b7g_O Protein (glyceraldehyde 3-phosphate dehydrogenase; archaea, hyperthermophIle, GAPDH, hyperthermophilic dehydrog oxidoreductase; 2.05A {Sulfolobus solfataricus} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=96.42 E-value=0.0047 Score=64.57 Aligned_cols=84 Identities=18% Similarity=0.216 Sum_probs=52.4
Q ss_pred EEEEEecChhHHHHHHHhhcC-CCEEEE-ECCCCCh--hHHHHcCCccc------------------CHHHHhccCCEEE
Q 007512 199 TLAVLGFGKVGSEVARRAKGL-GMHVIA-HDPYAPA--DRARAIGVDLV------------------SFDEAIATADFIS 256 (600)
Q Consensus 199 tiGIIGlG~IG~~vA~~l~~~-g~~V~~-~d~~~~~--~~a~~~g~~~~------------------~l~ell~~aDvV~ 256 (600)
+|||+|+|+||+.+++.+... ++++.+ +|+.... ..+...|+... ++++++.++|+|+
T Consensus 3 kVgIiGaG~iG~~~~r~L~~~p~~elvav~d~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~v~v~~~~e~l~~~vDvV~ 82 (340)
T 1b7g_O 3 NVAVNGYGTIGKRVADAIIKQPDMKLVGVAKTSPNYEAFIAHRRGIRIYVPQQSIKKFEESGIPVAGTVEDLIKTSDIVV 82 (340)
T ss_dssp EEEEECCSHHHHHHHHHHHTCTTEEEEEEECSSCSHHHHHHHHTTCCEECCGGGHHHHHTTTCCCCCCHHHHHHHCSEEE
T ss_pred EEEEEecCHHHHHHHHHHHcCCCCEEEEEEcCChHHHHHHHHhcCcceecCcCHHHHhcccccccccCHhHhhcCCCEEE
Confidence 799999999999999999865 688876 4654321 23334344321 3345566899999
Q ss_pred EecCCCccccccccHhHhccCCCceEEEEcc
Q 007512 257 LHMPLTPATSKVLNDETFGKMKKGVRIINVA 287 (600)
Q Consensus 257 l~~Pl~~~t~~li~~~~l~~mk~gailvNva 287 (600)
.|+|... +.... .. .++.|+.+|+.+
T Consensus 83 ~aTp~~~-s~~~a--~~--~~~aG~kvV~~s 108 (340)
T 1b7g_O 83 DTTPNGV-GAQYK--PI--YLQLQRNAIFQG 108 (340)
T ss_dssp ECCSTTH-HHHHH--HH--HHHTTCEEEECT
T ss_pred ECCCCch-hHHHH--HH--HHHcCCeEEEeC
Confidence 9998442 11111 11 134566666654
|
| >1j5p_A Aspartate dehydrogenase; TM1643, structural genomics, JCSG, protein structure initiative, joint center for structural G oxidoreductase; HET: NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3 PDB: 1h2h_A* | Back alignment and structure |
|---|
Probab=96.41 E-value=0.0033 Score=62.91 Aligned_cols=96 Identities=17% Similarity=0.241 Sum_probs=66.8
Q ss_pred cCCEEEEEecChhHHHHHHHhhcCCCEEE-EECCCCChhHHHHcCCcc-cCHHHHhccCCEEEEecCCCccccccccHhH
Q 007512 196 VGKTLAVLGFGKVGSEVARRAKGLGMHVI-AHDPYAPADRARAIGVDL-VSFDEAIATADFISLHMPLTPATSKVLNDET 273 (600)
Q Consensus 196 ~gktiGIIGlG~IG~~vA~~l~~~g~~V~-~~d~~~~~~~a~~~g~~~-~~l~ell~~aDvV~l~~Pl~~~t~~li~~~~ 273 (600)
+-++|++||+|.||+.+++. . ++++. +|+ ... .+.|+.. .+++++++++|+|+-|.+.. -+.+..
T Consensus 11 ~~~rV~i~G~GaIG~~v~~~--~-~leLv~v~~-~k~----gelgv~a~~d~d~lla~pD~VVe~A~~~-----av~e~~ 77 (253)
T 1j5p_A 11 HHMTVLIIGMGNIGKKLVEL--G-NFEKIYAYD-RIS----KDIPGVVRLDEFQVPSDVSTVVECASPE-----AVKEYS 77 (253)
T ss_dssp CCCEEEEECCSHHHHHHHHH--S-CCSEEEEEC-SSC----CCCSSSEECSSCCCCTTCCEEEECSCHH-----HHHHHH
T ss_pred ccceEEEECcCHHHHHHHhc--C-CcEEEEEEe-ccc----cccCceeeCCHHHHhhCCCEEEECCCHH-----HHHHHH
Confidence 45799999999999999998 4 77764 467 221 1226653 46999999999998887522 233334
Q ss_pred hccCCCceEEEEccCCccccH---HHHHHhHhcC
Q 007512 274 FGKMKKGVRIINVARGGVIDE---EALVRALDSG 304 (600)
Q Consensus 274 l~~mk~gailvNvarg~ivde---~aL~~aL~~g 304 (600)
...|+.|.-++-++-|.+.|. +.|.++-+.|
T Consensus 78 ~~iL~aG~dvv~~S~gaLad~~l~~~L~~aA~~g 111 (253)
T 1j5p_A 78 LQILKNPVNYIIISTSAFADEVFRERFFSELKNS 111 (253)
T ss_dssp HHHTTSSSEEEECCGGGGGSHHHHHHHHHHHHTC
T ss_pred HHHHHCCCCEEEcChhhhcCHHHHHHHHHHHHHC
Confidence 455889999999988888775 3444444443
|
| >3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A* | Back alignment and structure |
|---|
Probab=96.41 E-value=0.002 Score=69.25 Aligned_cols=91 Identities=20% Similarity=0.284 Sum_probs=64.4
Q ss_pred CCEEEEEecChhHHHHHHHhhcCCCEEEEECCCC-ChhHHHHcCCccc-----C---HHHH-hccCCEEEEecCCCcccc
Q 007512 197 GKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYA-PADRARAIGVDLV-----S---FDEA-IATADFISLHMPLTPATS 266 (600)
Q Consensus 197 gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~-~~~~a~~~g~~~~-----~---l~el-l~~aDvV~l~~Pl~~~t~ 266 (600)
+.+|.|+|+|++|+.+|+.|+..|.+|++.|.+. ..+.+.+.|+..+ + |.++ +.+||+|++++|....+.
T Consensus 4 ~~~viIiG~Gr~G~~va~~L~~~g~~vvvId~d~~~v~~~~~~g~~vi~GDat~~~~L~~agi~~A~~viv~~~~~~~n~ 83 (413)
T 3l9w_A 4 GMRVIIAGFGRFGQITGRLLLSSGVKMVVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAIDDPQTNL 83 (413)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCEEEEECCHHHHHHHHHTTCCCEESCTTCHHHHHHTTTTTCSEEEECCSSHHHHH
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHhCCCeEEEcCCCCHHHHHhcCCCccCEEEECCCChHHHH
Confidence 4579999999999999999999999999999886 3455666776432 2 3333 688999999999544322
Q ss_pred ccccHhHhccCCCceEEEEccCC
Q 007512 267 KVLNDETFGKMKKGVRIINVARG 289 (600)
Q Consensus 267 ~li~~~~l~~mk~gailvNvarg 289 (600)
.-......+.|+..+|--++.
T Consensus 84 --~i~~~ar~~~p~~~Iiara~~ 104 (413)
T 3l9w_A 84 --QLTEMVKEHFPHLQIIARARD 104 (413)
T ss_dssp --HHHHHHHHHCTTCEEEEEESS
T ss_pred --HHHHHHHHhCCCCeEEEEECC
Confidence 223344556677666654443
|
| >1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A* | Back alignment and structure |
|---|
Probab=96.38 E-value=0.0047 Score=64.79 Aligned_cols=88 Identities=24% Similarity=0.303 Sum_probs=64.7
Q ss_pred cCCEEEEEecChhHHHHHHHhhcCCCEEEEECCCC-ChhHHH-HcCCccc----C---HHHHhccCCEEEEecCCCcccc
Q 007512 196 VGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYA-PADRAR-AIGVDLV----S---FDEAIATADFISLHMPLTPATS 266 (600)
Q Consensus 196 ~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~-~~~~a~-~~g~~~~----~---l~ell~~aDvV~l~~Pl~~~t~ 266 (600)
.|++|.|+|.|.||...++.++.+|++|++.++.. ..+.+. ++|...+ + +.++....|+|+-++.....
T Consensus 187 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~lGa~~v~~~~~~~~~~~~~~~~D~vid~~g~~~~-- 264 (366)
T 1yqd_A 187 PGKHIGIVGLGGLGHVAVKFAKAFGSKVTVISTSPSKKEEALKNFGADSFLVSRDQEQMQAAAGTLDGIIDTVSAVHP-- 264 (366)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGHHHHHHTSCCSEEEETTCHHHHHHTTTCEEEEEECCSSCCC--
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcCCceEEeccCHHHHHHhhCCCCEEEECCCcHHH--
Confidence 58899999999999999999999999999998765 334444 6776422 2 23334568999888874321
Q ss_pred ccccHhHhccCCCceEEEEccC
Q 007512 267 KVLNDETFGKMKKGVRIINVAR 288 (600)
Q Consensus 267 ~li~~~~l~~mk~gailvNvar 288 (600)
-...+..|+++..+++++.
T Consensus 265 ---~~~~~~~l~~~G~iv~~g~ 283 (366)
T 1yqd_A 265 ---LLPLFGLLKSHGKLILVGA 283 (366)
T ss_dssp ---SHHHHHHEEEEEEEEECCC
T ss_pred ---HHHHHHHHhcCCEEEEEcc
Confidence 2455667888888888874
|
| >1oth_A Protein (ornithine transcarbamoylase); transferase; HET: PAO; 1.85A {Homo sapiens} SCOP: c.78.1.1 c.78.1.1 PDB: 1ep9_A 1fvo_A 1c9y_A* 1fb5_A | Back alignment and structure |
|---|
Probab=96.37 E-value=0.03 Score=57.89 Aligned_cols=126 Identities=17% Similarity=0.119 Sum_probs=84.2
Q ss_pred HhCCceeecCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCccccccccceeccCCEEEEEecC-hhHHHHHHHhhcC
Q 007512 141 TEFGCLVVNAPTANTVAAAEHGIALLAAMARNVAQADASVKAGKWQRNKYVGVSLVGKTLAVLGFG-KVGSEVARRAKGL 219 (600)
Q Consensus 141 ~~~GI~V~n~p~~~~~~vAE~~l~lll~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktiGIIGlG-~IG~~vA~~l~~~ 219 (600)
...+|+|+|+-+.+.-++ .+++=++.+.+++ | .+.|.+|++||=| ++..+.+..+..+
T Consensus 120 ~~~~vPVINa~~~~~HPt--QaLaDl~Ti~e~~------------------g-~l~gl~va~vGD~~~va~Sl~~~~~~~ 178 (321)
T 1oth_A 120 KEASIPIINGLSDLYHPI--QILADYLTLQEHY------------------S-SLKGLTLSWIGDGNNILHSIMMSAAKF 178 (321)
T ss_dssp HHCSSCEEESCCSSCCHH--HHHHHHHHHHHHH------------------S-CCTTCEEEEESCSSHHHHHHHTTTGGG
T ss_pred HhCCCCEEcCCCCCCCcH--HHHHHHHHHHHHh------------------C-CcCCcEEEEECCchhhHHHHHHHHHHc
Confidence 345789999876555444 3444444444421 2 4789999999985 5888888888899
Q ss_pred CCEEEEECCCC---Chh---HH----HHcCC--c-ccCHHHHhccCCEEEEecCC--Ccc----------ccccccHhHh
Q 007512 220 GMHVIAHDPYA---PAD---RA----RAIGV--D-LVSFDEAIATADFISLHMPL--TPA----------TSKVLNDETF 274 (600)
Q Consensus 220 g~~V~~~d~~~---~~~---~a----~~~g~--~-~~~l~ell~~aDvV~l~~Pl--~~~----------t~~li~~~~l 274 (600)
|++|....|.. +.+ .+ .+.|. . ..++++.+++||+|..-+-. ..+ ...-++.+.+
T Consensus 179 G~~v~~~~P~~~~~~~~~~~~~~~~a~~~G~~~~~~~d~~eav~~aDvvy~d~w~s~g~e~~~~~~~~~~~~y~v~~~~l 258 (321)
T 1oth_A 179 GMHLQAATPKGYEPDASVTKLAEQYAKENGTKLLLTNDPLEAAHGGNVLITDTWISMGREEEKKKRLQAFQGYQVTMKTA 258 (321)
T ss_dssp TCEEEEECCTTCCCCHHHHHHHHHHHHHHTCCEEEESCHHHHHTTCSEEEECCSSCTTCGGGHHHHHHHTTTCCBCHHHH
T ss_pred CCeEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEECHHHHhccCCEEEEeccccccchhhhHHHHHhccCceECHHHH
Confidence 99999988754 221 11 13453 3 34899999999999984311 111 1144677778
Q ss_pred ccCCCceEEEEcc
Q 007512 275 GKMKKGVRIINVA 287 (600)
Q Consensus 275 ~~mk~gailvNva 287 (600)
+.+||+++|.-|.
T Consensus 259 ~~a~~dai~mH~l 271 (321)
T 1oth_A 259 KVAASDWTFLHCL 271 (321)
T ss_dssp HTSCTTCEEEECS
T ss_pred hhcCCCCEEECCC
Confidence 8888888888885
|
| >1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.5 PDB: 2q4e_A | Back alignment and structure |
|---|
Probab=96.36 E-value=0.0091 Score=62.39 Aligned_cols=103 Identities=14% Similarity=0.170 Sum_probs=64.7
Q ss_pred CEEEEEecChhHHHHHHHhhcC-CCEEE-EECCCCCh--hHHHHcCC----c-ccCHHHHhc--cCCEEEEecCCCcccc
Q 007512 198 KTLAVLGFGKVGSEVARRAKGL-GMHVI-AHDPYAPA--DRARAIGV----D-LVSFDEAIA--TADFISLHMPLTPATS 266 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~-g~~V~-~~d~~~~~--~~a~~~g~----~-~~~l~ell~--~aDvV~l~~Pl~~~t~ 266 (600)
.+|||||+|.||+.+++.++.. ++++. ++|++... ..+.+.|+ . +.+++++++ ++|+|++|+|... ..
T Consensus 7 ~~vgiiG~G~ig~~~~~~l~~~~~~~lv~v~d~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~-h~ 85 (362)
T 1ydw_A 7 IRIGVMGCADIARKVSRAIHLAPNATISGVASRSLEKAKAFATANNYPESTKIHGSYESLLEDPEIDALYVPLPTSL-HV 85 (362)
T ss_dssp EEEEEESCCTTHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTCCTTCEEESSHHHHHHCTTCCEEEECCCGGG-HH
T ss_pred eEEEEECchHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHHhCCCCCCeeeCCHHHHhcCCCCCEEEEcCChHH-HH
Confidence 4799999999999999998865 67775 57877522 23445563 2 358999986 5999999999332 11
Q ss_pred ccccHhHhccCCCce-EEEEcc-CCccccHHHHHHhHhcCC
Q 007512 267 KVLNDETFGKMKKGV-RIINVA-RGGVIDEEALVRALDSGR 305 (600)
Q Consensus 267 ~li~~~~l~~mk~ga-ilvNva-rg~ivde~aL~~aL~~g~ 305 (600)
+-....++.|. +++.-- --.+-+.++|.++.++..
T Consensus 86 ----~~~~~al~aGk~V~~EKP~a~~~~e~~~l~~~a~~~g 122 (362)
T 1ydw_A 86 ----EWAIKAAEKGKHILLEKPVAMNVTEFDKIVDACEANG 122 (362)
T ss_dssp ----HHHHHHHTTTCEEEECSSCSSSHHHHHHHHHHHHTTT
T ss_pred ----HHHHHHHHCCCeEEEecCCcCCHHHHHHHHHHHHHcC
Confidence 11223356665 343321 112223456676666543
|
| >1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T* | Back alignment and structure |
|---|
Probab=96.31 E-value=0.0088 Score=61.24 Aligned_cols=93 Identities=19% Similarity=0.156 Sum_probs=59.3
Q ss_pred CCEEEEEecChhHHHHHHHhhcCCC--EEEEECCCCChhH--HH--HcCC------c--ccCHHHHhccCCEEEEecCCC
Q 007512 197 GKTLAVLGFGKVGSEVARRAKGLGM--HVIAHDPYAPADR--AR--AIGV------D--LVSFDEAIATADFISLHMPLT 262 (600)
Q Consensus 197 gktiGIIGlG~IG~~vA~~l~~~g~--~V~~~d~~~~~~~--a~--~~g~------~--~~~l~ell~~aDvV~l~~Pl~ 262 (600)
.++|+|||.|.+|..+|..|...|. +|..+|+...... +. ..+. . ..+-.+.++.||+|+++++..
T Consensus 7 ~mkI~IiGaG~vG~~~a~~l~~~g~~~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~aD~Vii~v~~~ 86 (319)
T 1lld_A 7 PTKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGSDDPEICRDADMVVITAGPR 86 (319)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEEESCGGGGTTCSEEEECCCCC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHhhhhhcCCeEEEeCCCHHHhCCCCEEEECCCCC
Confidence 4689999999999999999988888 9999998752211 11 1222 1 111235678999999999633
Q ss_pred cccccc------------cc--HhHhccCCCceEEEEccCCc
Q 007512 263 PATSKV------------LN--DETFGKMKKGVRIINVARGG 290 (600)
Q Consensus 263 ~~t~~l------------i~--~~~l~~mk~gailvNvarg~ 290 (600)
. ..+. +. ...+....++++++++.-|-
T Consensus 87 ~-~~g~~r~~~~~~n~~~~~~~~~~i~~~~~~~~vi~~~Np~ 127 (319)
T 1lld_A 87 Q-KPGQSRLELVGATVNILKAIMPNLVKVAPNAIYMLITNPV 127 (319)
T ss_dssp C-CTTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECCSSH
T ss_pred C-CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEecCch
Confidence 2 1110 00 11122236788999886543
|
| >2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A | Back alignment and structure |
|---|
Probab=96.30 E-value=0.0032 Score=61.52 Aligned_cols=85 Identities=16% Similarity=0.273 Sum_probs=56.3
Q ss_pred CCEEEEEecChhHHHHHHHhhcCCCEEEEECCCCCh-hHHHHcCCccc-----C---HHHH-hccCCEEEEecCCCcccc
Q 007512 197 GKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPA-DRARAIGVDLV-----S---FDEA-IATADFISLHMPLTPATS 266 (600)
Q Consensus 197 gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~~-~~a~~~g~~~~-----~---l~el-l~~aDvV~l~~Pl~~~t~ 266 (600)
.+++.|+|+|.+|+.+|+.|...|. |+++|++... +.+. .|+..+ + |+++ +.+||.|++++|....
T Consensus 9 ~~~viI~G~G~~G~~la~~L~~~g~-v~vid~~~~~~~~~~-~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~d~~-- 84 (234)
T 2aef_A 9 SRHVVICGWSESTLECLRELRGSEV-FVLAEDENVRKKVLR-SGANFVHGDPTRVSDLEKANVRGARAVIVDLESDSE-- 84 (234)
T ss_dssp -CEEEEESCCHHHHHHHHHSTTSEE-EEEESCGGGHHHHHH-TTCEEEESCTTCHHHHHHTTCTTCSEEEECCSCHHH--
T ss_pred CCEEEEECCChHHHHHHHHHHhCCe-EEEEECCHHHHHHHh-cCCeEEEcCCCCHHHHHhcCcchhcEEEEcCCCcHH--
Confidence 4689999999999999999999999 9999987632 2333 555321 2 3333 7889999999984432
Q ss_pred ccccHhHhccCCCceEEEE
Q 007512 267 KVLNDETFGKMKKGVRIIN 285 (600)
Q Consensus 267 ~li~~~~l~~mk~gailvN 285 (600)
.+.-......+.++..++-
T Consensus 85 n~~~~~~a~~~~~~~~iia 103 (234)
T 2aef_A 85 TIHCILGIRKIDESVRIIA 103 (234)
T ss_dssp HHHHHHHHHHHCSSSEEEE
T ss_pred HHHHHHHHHHHCCCCeEEE
Confidence 2222333444666634433
|
| >3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=96.29 E-value=0.0089 Score=64.80 Aligned_cols=95 Identities=16% Similarity=0.202 Sum_probs=67.8
Q ss_pred ceeccCCEEEEEecC----------hhHHHHHHHhhcCCCEEEEECCCCChhHHHHcC--Cccc-CHHHHhccCCEEEEe
Q 007512 192 GVSLVGKTLAVLGFG----------KVGSEVARRAKGLGMHVIAHDPYAPADRARAIG--VDLV-SFDEAIATADFISLH 258 (600)
Q Consensus 192 g~~l~gktiGIIGlG----------~IG~~vA~~l~~~g~~V~~~d~~~~~~~a~~~g--~~~~-~l~ell~~aDvV~l~ 258 (600)
+..+.|++|+|+|+- .=...+++.|...|.+|.+|||+...+.....+ +.+. ++++.++.||.|+++
T Consensus 313 ~~~~~~~~v~vlGlafK~~~dD~R~sp~~~i~~~L~~~g~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~ad~~vi~ 392 (450)
T 3gg2_A 313 KGNVQGRCVAIWGLSFKPGTDDMREAPSLVLIEKLLEVGCRVRVYDPVAMKEAQKRLGDKVEYTTDMYDAVRGAEALFHV 392 (450)
T ss_dssp TTCCTTCEEEEECCSSSTTCCCCTTCHHHHHHHHHHHTTCEEEEECSSCHHHHHHHHGGGSEECSSHHHHTTTCSCEEEC
T ss_pred cccCCCCEEEEEeeeeCCCCcccccChHHHHHHHHHHCCCEEEEECCCCcHHHHHhcCccceecCCHHHHhcCCCEEEEc
Confidence 456899999999985 236789999999999999999998433222333 4443 678999999999999
Q ss_pred cCCCccccccccHhHh-ccCCCceEEEEccCCc
Q 007512 259 MPLTPATSKVLNDETF-GKMKKGVRIINVARGG 290 (600)
Q Consensus 259 ~Pl~~~t~~li~~~~l-~~mk~gailvNvarg~ 290 (600)
++-. +-+. ++-..+ ..|+ +.+|+|+ |+-
T Consensus 393 t~~~-~f~~-~~~~~~~~~~~-~~~i~D~-r~~ 421 (450)
T 3gg2_A 393 TEWK-EFRM-PDWSALSQAMA-ASLVIDG-RNV 421 (450)
T ss_dssp SCCG-GGSS-CCHHHHHHHSS-SCEEEES-SCC
T ss_pred cCCH-HHhh-cCHHHHHHhcC-CCEEEEC-CCC
Confidence 9833 3333 344433 3465 5689995 543
|
| >3grf_A Ornithine carbamoyltransferase; ornithine transcarbamoylase, arginine degradation pathway, giardia lamblia, drug target; 2.00A {Giardia intestinalis} | Back alignment and structure |
|---|
Probab=96.29 E-value=0.038 Score=57.30 Aligned_cols=134 Identities=14% Similarity=0.121 Sum_probs=86.3
Q ss_pred HHhCCceeecCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCccccccccceeccCCEEEEEecC--hhHHHHHHHhh
Q 007512 140 ATEFGCLVVNAPTANTVAAAEHGIALLAAMARNVAQADASVKAGKWQRNKYVGVSLVGKTLAVLGFG--KVGSEVARRAK 217 (600)
Q Consensus 140 a~~~GI~V~n~p~~~~~~vAE~~l~lll~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktiGIIGlG--~IG~~vA~~l~ 217 (600)
|...+|+|+|+-....-++ .+++=++.+.+++.. .. .....+.|.+|++||=| ++..+.+..+.
T Consensus 118 A~~~~vPVINag~~~~HPt--QaLaDl~Ti~e~~g~----------~~--~~~~~l~gl~va~vGD~~~~va~Sl~~~~~ 183 (328)
T 3grf_A 118 AQHASVPCINALDDFGHPL--QMVCDFMTIKEKFTA----------AG--EFSNGFKGIKFAYCGDSMNNVTYDLMRGCA 183 (328)
T ss_dssp HHHCSSCEEESSCSSCCHH--HHHHHHHHHHHHHHH----------TT--CCTTTGGGCCEEEESCCSSHHHHHHHHHHH
T ss_pred HHhCCCCEEeCCCCCCCcH--HHHHHHHHHHHHhCC----------cc--ccccccCCcEEEEeCCCCcchHHHHHHHHH
Confidence 3345788999876544443 334444444443221 00 01235889999999986 88999999999
Q ss_pred cCCCEEEEECCCC-C----hh---HHH----H--cCCc---ccCHHHHhccCCEEEEe----cCCCcc---------ccc
Q 007512 218 GLGMHVIAHDPYA-P----AD---RAR----A--IGVD---LVSFDEAIATADFISLH----MPLTPA---------TSK 267 (600)
Q Consensus 218 ~~g~~V~~~d~~~-~----~~---~a~----~--~g~~---~~~l~ell~~aDvV~l~----~Pl~~~---------t~~ 267 (600)
.+|++|....|.. . .+ .++ + .|.. ..++++.+++||+|..- +...++ ...
T Consensus 184 ~~G~~v~~~~P~~~~~~p~~~~~~~~~~~~~~~~~g~~v~~~~d~~eav~~aDvvytd~W~sm~iq~er~~~~~~~~~~y 263 (328)
T 3grf_A 184 LLGMECHVCCPDHKDFKPIKEVIDECEEIIAKHGTGGSIKIFHDCKKGCEGVDVVYTDSWMSYHITKEQKEARLKVLTPF 263 (328)
T ss_dssp HHTCEEEEECCSSGGGSCCHHHHHHHHHHHHHHTCCCEEEEESSHHHHHTTCSEEEECCCC--------CCTHHHHHGGG
T ss_pred HcCCEEEEECChHhhhCCCHHHHHHHHHHHhhccCCCeEEEEcCHHHHhcCCCEEEecCccccCCcHHHHHHHHHHhcCC
Confidence 9999999988753 2 11 122 2 4542 24899999999999863 221111 124
Q ss_pred cccHhHhccCCCceEEEEcc
Q 007512 268 VLNDETFGKMKKGVRIINVA 287 (600)
Q Consensus 268 li~~~~l~~mk~gailvNva 287 (600)
-++.+.++.+|++++|.-|.
T Consensus 264 ~vt~~~l~~a~~~ai~mH~l 283 (328)
T 3grf_A 264 QVDDAVMAVTSKRSIFMNCL 283 (328)
T ss_dssp CBCHHHHTTSCTTCEEEECS
T ss_pred CCCHHHHHhcCCCCEEECCC
Confidence 47888888899999999986
|
| >4ep1_A Otcase, ornithine carbamoyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; 3.25A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=96.29 E-value=0.042 Score=57.16 Aligned_cols=128 Identities=22% Similarity=0.301 Sum_probs=85.5
Q ss_pred HHHhCCceeecCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCccccccccceeccCCEEEEEec-ChhHHHHHHHhh
Q 007512 139 AATEFGCLVVNAPTANTVAAAEHGIALLAAMARNVAQADASVKAGKWQRNKYVGVSLVGKTLAVLGF-GKVGSEVARRAK 217 (600)
Q Consensus 139 aa~~~GI~V~n~p~~~~~~vAE~~l~lll~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktiGIIGl-G~IG~~vA~~l~ 217 (600)
.|...+|+|+|+-+...-++ .+++=++.+.++ .| .+.|.+|++||= +++..+.+..+.
T Consensus 142 lA~~~~vPVINag~~~~HPt--QaLaDl~TI~E~------------------~G-~l~glkva~vGD~~nva~Sl~~~~~ 200 (340)
T 4ep1_A 142 LAKESSIPVINGLTDDHHPC--QALADLMTIYEE------------------TN-TFKGIKLAYVGDGNNVCHSLLLASA 200 (340)
T ss_dssp HHHHCSSCEEEEECSSCCHH--HHHHHHHHHHHH------------------HS-CCTTCEEEEESCCCHHHHHHHHHHH
T ss_pred HHHhCCCCEEeCCCCCCCcH--HHHHHHHHHHHH------------------hC-CCCCCEEEEECCCchhHHHHHHHHH
Confidence 44556899999765443333 333333333331 12 378999999986 578889999999
Q ss_pred cCCCEEEEECCCC--ChhH--------HHHcCCc---ccCHHHHhccCCEEEEecCCCc----c-------ccccccHhH
Q 007512 218 GLGMHVIAHDPYA--PADR--------ARAIGVD---LVSFDEAIATADFISLHMPLTP----A-------TSKVLNDET 273 (600)
Q Consensus 218 ~~g~~V~~~d~~~--~~~~--------a~~~g~~---~~~l~ell~~aDvV~l~~Pl~~----~-------t~~li~~~~ 273 (600)
.+|++|....|.. +.+. +.+.|.. ..++++++++||+|..-.=... + ...-++.+.
T Consensus 201 ~~G~~v~~~~P~~~~~~~~~~~~~~~~a~~~G~~v~~~~d~~eav~~aDVvyt~~w~smg~e~~~~~~~~~~~y~vt~el 280 (340)
T 4ep1_A 201 KVGMHMTVATPVGYRPNEEIVKKALAIAKETGAEIEILHNPELAVNEADFIYTDVWMSMGQEGEEEKYTLFQPYQINKEL 280 (340)
T ss_dssp HHTCEEEEECCTTCCCCHHHHHHHHHHHHHHCCCEEEESCHHHHHTTCSEEEECCC------CHHHHHHHHGGGCBCHHH
T ss_pred HcCCEEEEECCcccCCCHHHHHHHHHHHHHcCCeEEEECCHHHHhCCCCEEEecCccCCCCCchHHHHHHhccccCCHHH
Confidence 9999999988753 2211 2345643 2489999999999987442110 0 124578888
Q ss_pred hccCCCceEEEEcc
Q 007512 274 FGKMKKGVRIINVA 287 (600)
Q Consensus 274 l~~mk~gailvNva 287 (600)
++.+|++++|.-|.
T Consensus 281 l~~ak~dai~MHcL 294 (340)
T 4ep1_A 281 VKHAKQTYHFLHCL 294 (340)
T ss_dssp HTTSCTTCEEEECS
T ss_pred HHhcCCCcEEECCC
Confidence 88899999999887
|
| >4fgw_A Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxidoreductase; 2.45A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.27 E-value=0.0046 Score=65.78 Aligned_cols=89 Identities=18% Similarity=0.272 Sum_probs=61.4
Q ss_pred EEEEEecChhHHHHHHHhhcCC--------CEEEEECCCCC---hhHHHHc-----------CCc-------ccCHHHHh
Q 007512 199 TLAVLGFGKVGSEVARRAKGLG--------MHVIAHDPYAP---ADRARAI-----------GVD-------LVSFDEAI 249 (600)
Q Consensus 199 tiGIIGlG~IG~~vA~~l~~~g--------~~V~~~d~~~~---~~~a~~~-----------g~~-------~~~l~ell 249 (600)
+|+|||.|.-|..+|..|...| .+|..|.+... ....... |+. ..++++.+
T Consensus 36 KI~ViGaGsWGTALA~~la~ng~~~~~~~~~~V~lw~r~~e~~~~~~~e~in~~~~N~~YLpgv~Lp~~i~~t~dl~~al 115 (391)
T 4fgw_A 36 KVTVIGSGNWGTTIAKVVAENCKGYPEVFAPIVQMWVFEEEINGEKLTEIINTRHQNVKYLPGITLPDNLVANPDLIDSV 115 (391)
T ss_dssp EEEEECCSHHHHHHHHHHHHHHHHCTTTEEEEEEEECCCCBSSSCBHHHHHTTTCCBTTTBTTCCCCSSEEEESCHHHHH
T ss_pred eEEEECcCHHHHHHHHHHHHcCCCccccCCceEEEEEcchHhhhHHHHHHHHhcCcCcccCCCCcCCCCcEEeCCHHHHH
Confidence 8999999999999999987433 35777755431 1111111 121 13789999
Q ss_pred ccCCEEEEecCCCccccccccHhHhccCCCceEEEEccCC
Q 007512 250 ATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARG 289 (600)
Q Consensus 250 ~~aDvV~l~~Pl~~~t~~li~~~~l~~mk~gailvNvarg 289 (600)
+.||+|++++| ....+.++ ++....++++..+|+++.|
T Consensus 116 ~~ad~ii~avP-s~~~r~~l-~~l~~~~~~~~~iv~~~KG 153 (391)
T 4fgw_A 116 KDVDIIVFNIP-HQFLPRIC-SQLKGHVDSHVRAISCLKG 153 (391)
T ss_dssp TTCSEEEECSC-GGGHHHHH-HHHTTTSCTTCEEEECCCS
T ss_pred hcCCEEEEECC-hhhhHHHH-HHhccccCCCceeEEeccc
Confidence 99999999999 44344444 2334457899999999987
|
| >3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber} | Back alignment and structure |
|---|
Probab=96.27 E-value=0.0061 Score=63.02 Aligned_cols=94 Identities=20% Similarity=0.215 Sum_probs=60.2
Q ss_pred CEEEEEecChhHHHHHHHhhcCCC--EEEEECCCCChhHHH--H-------c--CCcc--cCHHHHhccCCEEEEecCCC
Q 007512 198 KTLAVLGFGKVGSEVARRAKGLGM--HVIAHDPYAPADRAR--A-------I--GVDL--VSFDEAIATADFISLHMPLT 262 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~g~--~V~~~d~~~~~~~a~--~-------~--g~~~--~~l~ell~~aDvV~l~~Pl~ 262 (600)
++|+|||.|.||.++|..+...|+ +|..+|......... + . .... .+..+.+++||+|+++.+..
T Consensus 1 Mkv~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~~v~~~~~~~a~~~aDvVii~ag~~ 80 (314)
T 3nep_X 1 MKVTVIGAGNVGATVAECVARQDVAKEVVMVDIKDGMPQGKALDMRESSPIHGFDTRVTGTNDYGPTEDSDVCIITAGLP 80 (314)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCSSEEEEECSSTTHHHHHHHHHHHHHHHHTCCCEEEEESSSGGGTTCSEEEECCCC-
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCchHHHHHHHHHHhccccccCCCcEEEECCCHHHhCCCCEEEECCCCC
Confidence 479999999999999999886665 999999876432111 1 1 1222 24568899999999998743
Q ss_pred ccccccc-------cH-------hHhccCCCceEEEEccCCccccH
Q 007512 263 PATSKVL-------ND-------ETFGKMKKGVRIINVARGGVIDE 294 (600)
Q Consensus 263 ~~t~~li-------~~-------~~l~~mk~gailvNvarg~ivde 294 (600)
...++- |. +.+....|++++++++ ..+|.
T Consensus 81 -~kpG~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vivvt--NPvd~ 123 (314)
T 3nep_X 81 -RSPGMSRDDLLAKNTEIVGGVTEQFVEGSPDSTIIVVA--NPLDV 123 (314)
T ss_dssp -------CHHHHHHHHHHHHHHHHHHHTTCTTCEEEECC--SSHHH
T ss_pred -CCCCCCHHHHHHhhHHHHHHHHHHHHHhCCCcEEEecC--CchhH
Confidence 222221 11 1233456889999986 34443
|
| >4a8p_A Putrescine carbamoyltransferase; ornithine agmatine deiminase route; HET: PAO; 2.00A {Enterococcus faecalis} PDB: 4a8h_A* 3txx_A | Back alignment and structure |
|---|
Probab=96.26 E-value=0.048 Score=57.06 Aligned_cols=128 Identities=15% Similarity=0.191 Sum_probs=80.4
Q ss_pred HhCCceeecCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCccccccccceeccCCEEEEEec-ChhHHHHHHHhhcC
Q 007512 141 TEFGCLVVNAPTANTVAAAEHGIALLAAMARNVAQADASVKAGKWQRNKYVGVSLVGKTLAVLGF-GKVGSEVARRAKGL 219 (600)
Q Consensus 141 ~~~GI~V~n~p~~~~~~vAE~~l~lll~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktiGIIGl-G~IG~~vA~~l~~~ 219 (600)
...+|+|+|+-+...-++ .+++=++.+.++++ .|..+.|.+|++||= +++..+++..+..|
T Consensus 115 ~~~~vPVINag~~~~HPt--QaLaDl~TI~E~~~----------------~G~~l~glkva~vGD~~rva~Sl~~~~~~~ 176 (355)
T 4a8p_A 115 NCATIPVINGMSDYNHPT--QELGDLCTMVEHLP----------------EGKKLEDCKVVFVGDATQVCFSLGLITTKM 176 (355)
T ss_dssp HHCSSCEEECCCSSCCHH--HHHHHHHHHHHTCC----------------TTCCGGGCEEEEESCCCHHHHHHHHHHHHT
T ss_pred HhCCCCEEeCCCCCCCcH--HHHHHHHHHHHHhh----------------cCCCCCCCEEEEECCCchhHHHHHHHHHHc
Confidence 345789999866443333 33333443433110 033588999999986 68889999999999
Q ss_pred CCEEEEECCCC--ChhH--------HHHcCCc---ccCHHHHhccCCEEEEec--CCCccc------------cccccHh
Q 007512 220 GMHVIAHDPYA--PADR--------ARAIGVD---LVSFDEAIATADFISLHM--PLTPAT------------SKVLNDE 272 (600)
Q Consensus 220 g~~V~~~d~~~--~~~~--------a~~~g~~---~~~l~ell~~aDvV~l~~--Pl~~~t------------~~li~~~ 272 (600)
|++|....|.. +.+. +.+.|.. ..+++ .+++||+|..-+ +..++. ..-++.+
T Consensus 177 G~~v~~~~P~~~~p~~~~~~~~~~~a~~~G~~v~~~~d~~-av~~aDVVytd~w~smgq~~~~~~er~~~~~~~y~vt~e 255 (355)
T 4a8p_A 177 GMNFVHFGPEGFQLNEEHQAKLAKNCEVSGGSFLVTDDAS-SVEGADFLYTDVWYGLYEAELSEEERMKVFYPKYQVNQE 255 (355)
T ss_dssp TCEEEEECCTTSSCCHHHHHHHHHHHHHHSCEEEEECCGG-GGTTCSEEEECCSSEETTEECCHHHHHHHHTTTTCBCHH
T ss_pred CCEEEEECCCccCCCHHHHHHHHHHHHHcCCeEEEECCHH-HHcCCCEEEecccccCcchhhhhHHHHHHhccccccCHH
Confidence 99999988754 2211 2344643 24788 999999998632 111100 1345666
Q ss_pred HhccCCCceEEEEcc
Q 007512 273 TFGKMKKGVRIINVA 287 (600)
Q Consensus 273 ~l~~mk~gailvNva 287 (600)
.++.+|++++|.-|.
T Consensus 256 ll~~ak~dai~MHcL 270 (355)
T 4a8p_A 256 MMDRAGANCKFMHCL 270 (355)
T ss_dssp HHHHHCTTCEEEECS
T ss_pred HHHhcCCCcEEECCC
Confidence 666677777777765
|
| >2dvm_A Malic enzyme, 439AA long hypothetical malate oxidoreductase; NAD, structural genomics, NPPSFA; HET: NAD MES; 1.60A {Pyrococcus horikoshii} PDB: 1ww8_A* | Back alignment and structure |
|---|
Probab=96.25 E-value=0.0068 Score=65.40 Aligned_cols=94 Identities=21% Similarity=0.211 Sum_probs=71.3
Q ss_pred ceeccCCEEEEEecChhHHHHHHHhhcCCC---EEEEEC----CC----CChh---H-------HHHcCC--cccCHHHH
Q 007512 192 GVSLVGKTLAVLGFGKVGSEVARRAKGLGM---HVIAHD----PY----APAD---R-------ARAIGV--DLVSFDEA 248 (600)
Q Consensus 192 g~~l~gktiGIIGlG~IG~~vA~~l~~~g~---~V~~~d----~~----~~~~---~-------a~~~g~--~~~~l~el 248 (600)
|..+.++++.|+|.|..|+.+++.|...|. +|+.+| +. .... . +...+. ...++.+.
T Consensus 181 g~~l~~~rvlvlGAGgAg~aia~~L~~~G~~~~~I~vvd~~~~R~G~~~~a~~~~~L~~~~~~~a~~~~~~~~~~~L~e~ 260 (439)
T 2dvm_A 181 GKKISEITLALFGAGAAGFATLRILTEAGVKPENVRVVELVNGKPRILTSDLDLEKLFPYRGWLLKKTNGENIEGGPQEA 260 (439)
T ss_dssp TCCTTTCCEEEECCSHHHHHHHHHHHHTTCCGGGEEEEEEETTEEEECCTTSCHHHHSTTCHHHHTTSCTTCCCSSHHHH
T ss_pred CCCccCCEEEEECccHHHHHHHHHHHHcCCCcCeEEEEEccCCCcCccccccchhHHHHHHHHHhhccccccccccHHHH
Confidence 456789999999999999999999999998 799998 65 2111 0 111111 13468899
Q ss_pred hccCCEEEEecCCCccccccccHhHhccCCCceEEEEccC
Q 007512 249 IATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVAR 288 (600)
Q Consensus 249 l~~aDvV~l~~Pl~~~t~~li~~~~l~~mk~gailvNvar 288 (600)
++++|+|+.++|..+ +++.++.+..|+++.++.|++.
T Consensus 261 l~~aDVlInaT~~~~---G~~~~e~v~~m~~~~iVfDLyn 297 (439)
T 2dvm_A 261 LKDADVLISFTRPGP---GVIKPQWIEKMNEDAIVFPLAN 297 (439)
T ss_dssp HTTCSEEEECSCCCS---SSSCHHHHTTSCTTCEEEECCS
T ss_pred hccCCEEEEcCCCcc---CCCChHHHHhcCCCCEEEECCC
Confidence 999999999998532 4566677888999999999954
|
| >4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=96.24 E-value=0.0054 Score=64.09 Aligned_cols=63 Identities=21% Similarity=0.327 Sum_probs=46.7
Q ss_pred CEEEEEecChhHHHHHHHhhcC--------CCEEEE-ECCCCC--hhHHHHcCCc--ccCHHHHhc--cCCEEEEecC
Q 007512 198 KTLAVLGFGKVGSEVARRAKGL--------GMHVIA-HDPYAP--ADRARAIGVD--LVSFDEAIA--TADFISLHMP 260 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~--------g~~V~~-~d~~~~--~~~a~~~g~~--~~~l~ell~--~aDvV~l~~P 260 (600)
-+|||||+|.||+.-++.++.. +++|.+ +|++.. ...+.+.|+. +.+++++++ +.|+|++|+|
T Consensus 26 irvgiIG~G~ig~~H~~a~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~g~~~~y~d~~ell~~~~iDaV~IatP 103 (393)
T 4fb5_A 26 LGIGLIGTGYMGKCHALAWNAVKTVFGDVERPRLVHLAEANAGLAEARAGEFGFEKATADWRALIADPEVDVVSVTTP 103 (393)
T ss_dssp CEEEEECCSHHHHHHHHHHTTHHHHHCSSCCCEEEEEECC--TTHHHHHHHHTCSEEESCHHHHHHCTTCCEEEECSC
T ss_pred ccEEEEcCCHHHHHHHHHHHhhhhhhccCCCcEEEEEECCCHHHHHHHHHHhCCCeecCCHHHHhcCCCCcEEEECCC
Confidence 4899999999999877766542 567775 688763 3456677874 458999986 5799999999
|
| >3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis} | Back alignment and structure |
|---|
Probab=96.24 E-value=0.01 Score=61.46 Aligned_cols=95 Identities=15% Similarity=0.175 Sum_probs=61.5
Q ss_pred cCCEEEEEecChhHHHHHHHhhcCCC-EEEEECCCCChhH--HH--Hc-------CCcc--cCHHHHhccCCEEEEecCC
Q 007512 196 VGKTLAVLGFGKVGSEVARRAKGLGM-HVIAHDPYAPADR--AR--AI-------GVDL--VSFDEAIATADFISLHMPL 261 (600)
Q Consensus 196 ~gktiGIIGlG~IG~~vA~~l~~~g~-~V~~~d~~~~~~~--a~--~~-------g~~~--~~l~ell~~aDvV~l~~Pl 261 (600)
..++|+|||.|.+|.++|..+...|+ +|..||....... +. +. .... .+-.+.++.||+|+++.+.
T Consensus 4 ~~~kI~iiGaG~vG~~~a~~l~~~~~~~v~l~Di~~~~~~g~a~dL~~~~~~~~~~~~v~~t~d~~a~~~aDvVIi~ag~ 83 (321)
T 3p7m_A 4 ARKKITLVGAGNIGGTLAHLALIKQLGDVVLFDIAQGMPNGKALDLLQTCPIEGVDFKVRGTNDYKDLENSDVVIVTAGV 83 (321)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCGGGGTTCSEEEECCSC
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCChHHHHHHHHHHHhhhhhcCCCcEEEEcCCHHHHCCCCEEEEcCCc
Confidence 35799999999999999999986666 9999998764321 11 11 1221 2234789999999999863
Q ss_pred Ccccccc-----c--cHh-------HhccCCCceEEEEccCCcccc
Q 007512 262 TPATSKV-----L--NDE-------TFGKMKKGVRIINVARGGVID 293 (600)
Q Consensus 262 ~~~t~~l-----i--~~~-------~l~~mk~gailvNvarg~ivd 293 (600)
. ...++ + |.. .+....|++++++++ ..+|
T Consensus 84 p-~k~G~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vivvt--NPvd 126 (321)
T 3p7m_A 84 P-RKPGMSRDDLLGINIKVMQTVGEGIKHNCPNAFVICIT--NPLD 126 (321)
T ss_dssp C-CCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECC--SSHH
T ss_pred C-CCCCCCHHHHHHHhHHHHHHHHHHHHHHCCCcEEEEec--CchH
Confidence 2 22222 1 111 122345889999994 4455
|
| >3fef_A Putative glucosidase LPLD; gulosidase, structural genomics, unknown function, glycosidase, hydrolase, manganese, metal-binding, NAD, PSI- 2; 2.20A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=96.21 E-value=0.0065 Score=65.84 Aligned_cols=112 Identities=13% Similarity=0.148 Sum_probs=71.4
Q ss_pred cCCEEEEEecChh--HHHHHHHhhc----CCCEEEEECCCCCh-hHHHHc---------CCcc-cCHHHHhccCCEEEEe
Q 007512 196 VGKTLAVLGFGKV--GSEVARRAKG----LGMHVIAHDPYAPA-DRARAI---------GVDL-VSFDEAIATADFISLH 258 (600)
Q Consensus 196 ~gktiGIIGlG~I--G~~vA~~l~~----~g~~V~~~d~~~~~-~~a~~~---------g~~~-~~l~ell~~aDvV~l~ 258 (600)
..++|+|||.|.+ |..++..+.. .| +|..||..... +..... .+.. .+++++++.||||+++
T Consensus 4 ~~~KIaVIGaGs~g~g~~la~~l~~~~~~~g-eV~L~Di~~e~le~~~~~~~~l~~~~~~I~~TtD~~eAl~dADfVI~a 82 (450)
T 3fef_A 4 DQIKIAYIGGGSQGWARSLMSDLSIDERMSG-TVALYDLDFEAAQKNEVIGNHSGNGRWRYEAVSTLKKALSAADIVIIS 82 (450)
T ss_dssp CCEEEEEETTTCSSHHHHHHHHHHHCSSCCE-EEEEECSSHHHHHHHHHHHTTSTTSCEEEEEESSHHHHHTTCSEEEEC
T ss_pred CCCEEEEECCChhHhHHHHHHHHHhccccCC-eEEEEeCCHHHHHHHHHHHHHHhccCCeEEEECCHHHHhcCCCEEEec
Confidence 4569999999998 5788877653 36 99999987521 211111 1222 3789999999999999
Q ss_pred cCCC-----------ccccccccH------------------------hHhccCCCceEEEEccCCccccHHHHHHhHhc
Q 007512 259 MPLT-----------PATSKVLND------------------------ETFGKMKKGVRIINVARGGVIDEEALVRALDS 303 (600)
Q Consensus 259 ~Pl~-----------~~t~~li~~------------------------~~l~~mk~gailvNvarg~ivde~aL~~aL~~ 303 (600)
++.. |.-.++... +.+....|+++++|++.--=+-..++.+.+..
T Consensus 83 irvG~~~~~~~De~ip~k~G~~~~vget~g~GGi~~alr~~~i~~~i~~~i~~~~p~a~~i~~tNPvdi~t~~~~k~~p~ 162 (450)
T 3fef_A 83 ILPGSLDDMEVDVHLPERCGIYQSVGDTVGPGGIIRGLRAVPIFAEIARAIRDYAPESWVINYTNPMSVCTRVLYKVFPG 162 (450)
T ss_dssp CCSSCHHHHHHHHHGGGGGTCCCSSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECCSSHHHHHHHHHHHCTT
T ss_pred cccCCcccchhhhhhhhccCccccchhhcCCchhhcccccHHHHHHHHHHHHHHCCCeEEEEecCchHHHHHHHHHHCCC
Confidence 9753 333344222 12333468999999976443345555554445
Q ss_pred CCceE
Q 007512 304 GRVAQ 308 (600)
Q Consensus 304 g~i~g 308 (600)
.++.|
T Consensus 163 ~rviG 167 (450)
T 3fef_A 163 IKAIG 167 (450)
T ss_dssp CEEEE
T ss_pred CCEEE
Confidence 56655
|
| >3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein structure initiative; HET: NAD; 2.30A {Chromobacterium violaceum} | Back alignment and structure |
|---|
Probab=96.19 E-value=0.0045 Score=64.87 Aligned_cols=63 Identities=16% Similarity=0.240 Sum_probs=47.1
Q ss_pred CEEEEEecChhHHH-HHHHhhcC-CCEEE-EECCCCCh-h-HHHHcC-Cc-ccCHHHHhccC--CEEEEecC
Q 007512 198 KTLAVLGFGKVGSE-VARRAKGL-GMHVI-AHDPYAPA-D-RARAIG-VD-LVSFDEAIATA--DFISLHMP 260 (600)
Q Consensus 198 ktiGIIGlG~IG~~-vA~~l~~~-g~~V~-~~d~~~~~-~-~a~~~g-~~-~~~l~ell~~a--DvV~l~~P 260 (600)
.+|||||+|.||+. .++.++.. ++++. ++|++... + .+...+ .. +.++++++++. |+|++|+|
T Consensus 6 ~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~~~~~~~~~~~~ll~~~~vD~V~i~tp 77 (359)
T 3m2t_A 6 IKVGLVGIGAQMQENLLPSLLQMQDIRIVAACDSDLERARRVHRFISDIPVLDNVPAMLNQVPLDAVVMAGP 77 (359)
T ss_dssp EEEEEECCSHHHHHTHHHHHHTCTTEEEEEEECSSHHHHGGGGGTSCSCCEESSHHHHHHHSCCSEEEECSC
T ss_pred ceEEEECCCHHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHHhcCCCcccCCHHHHhcCCCCCEEEEcCC
Confidence 58999999999995 88998876 78887 67887522 1 222332 33 45899999855 99999999
|
| >3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=96.17 E-value=0.01 Score=61.64 Aligned_cols=88 Identities=20% Similarity=0.245 Sum_probs=66.4
Q ss_pred cCCEEEEEecChhHHHHHHHhhcCCCEEEEECCCC-ChhHHHHcCCccc--CHHHHhccCCEEEEecCCCccccccccHh
Q 007512 196 VGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYA-PADRARAIGVDLV--SFDEAIATADFISLHMPLTPATSKVLNDE 272 (600)
Q Consensus 196 ~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~-~~~~a~~~g~~~~--~l~ell~~aDvV~l~~Pl~~~t~~li~~~ 272 (600)
.|.+|.|+|.|.||...++.++.+|.+|++.++.. ..+.++++|...+ +.+++.+..|+|+-++.... .-..
T Consensus 176 ~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~v~~~~~~~~~~~D~vid~~g~~~-----~~~~ 250 (348)
T 3two_A 176 KGTKVGVAGFGGLGSMAVKYAVAMGAEVSVFARNEHKKQDALSMGVKHFYTDPKQCKEELDFIISTIPTHY-----DLKD 250 (348)
T ss_dssp TTCEEEEESCSHHHHHHHHHHHHTTCEEEEECSSSTTHHHHHHTTCSEEESSGGGCCSCEEEEEECCCSCC-----CHHH
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHhcCCCeecCCHHHHhcCCCEEEECCCcHH-----HHHH
Confidence 48899999999999999999999999999999776 5677888887532 33333336888888776332 1245
Q ss_pred HhccCCCceEEEEccC
Q 007512 273 TFGKMKKGVRIINVAR 288 (600)
Q Consensus 273 ~l~~mk~gailvNvar 288 (600)
.+..++++..++.++.
T Consensus 251 ~~~~l~~~G~iv~~G~ 266 (348)
T 3two_A 251 YLKLLTYNGDLALVGL 266 (348)
T ss_dssp HHTTEEEEEEEEECCC
T ss_pred HHHHHhcCCEEEEECC
Confidence 5667888888888864
|
| >3e82_A Putative oxidoreductase; NAD, GFO/IDH/MOCA family, PSI-2, NYSGXRC, 11136F, structural genomics, protein structure initiative; 2.04A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=96.14 E-value=0.006 Score=63.98 Aligned_cols=63 Identities=21% Similarity=0.383 Sum_probs=47.0
Q ss_pred CEEEEEecChhHHH-HHHHhhcC-CCEEE-EECCCCChhHHHHc-CCc-ccCHHHHhc--cCCEEEEecCC
Q 007512 198 KTLAVLGFGKVGSE-VARRAKGL-GMHVI-AHDPYAPADRARAI-GVD-LVSFDEAIA--TADFISLHMPL 261 (600)
Q Consensus 198 ktiGIIGlG~IG~~-vA~~l~~~-g~~V~-~~d~~~~~~~a~~~-g~~-~~~l~ell~--~aDvV~l~~Pl 261 (600)
.+|||||+|.||+. .++.++.. ++++. ++|++.... .... ++. +.+++++++ +.|+|++|+|.
T Consensus 8 ~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~-~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~ 77 (364)
T 3e82_A 8 INIALIGYGFVGKTFHAPLIRSVPGLNLAFVASRDEEKV-KRDLPDVTVIASPEAAVQHPDVDLVVIASPN 77 (364)
T ss_dssp EEEEEECCSHHHHHTHHHHHHTSTTEEEEEEECSCHHHH-HHHCTTSEEESCHHHHHTCTTCSEEEECSCG
T ss_pred ceEEEECCCHHHHHHHHHHHhhCCCeEEEEEEcCCHHHH-HhhCCCCcEECCHHHHhcCCCCCEEEEeCCh
Confidence 47999999999997 77777766 78886 478765222 2233 443 358999998 79999999993
|
| >3tpf_A Otcase, ornithine carbamoyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, rossman fold; 2.70A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=96.12 E-value=0.068 Score=54.94 Aligned_cols=132 Identities=14% Similarity=0.072 Sum_probs=87.0
Q ss_pred HhCCceeecCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCccccccccceecc-CCEEEEEec-ChhHHHHHHHhhc
Q 007512 141 TEFGCLVVNAPTANTVAAAEHGIALLAAMARNVAQADASVKAGKWQRNKYVGVSLV-GKTLAVLGF-GKVGSEVARRAKG 218 (600)
Q Consensus 141 ~~~GI~V~n~p~~~~~~vAE~~l~lll~~~R~i~~~~~~~~~g~W~~~~~~g~~l~-gktiGIIGl-G~IG~~vA~~l~~ 218 (600)
...+|+|+|+-....-++ .+++=++.+.++ .| .+. |.+|++||= +++..+.+..+..
T Consensus 110 ~~~~vPVINag~~~~HPt--QaLaDl~Ti~e~------------------~g-~l~~gl~va~vGD~~~va~Sl~~~~~~ 168 (307)
T 3tpf_A 110 RYSKAPVINALSELYHPT--QVLGDLFTIKEW------------------NK-MQNGIAKVAFIGDSNNMCNSWLITAAI 168 (307)
T ss_dssp HHCSSCEEEEECSSCCHH--HHHHHHHHHHHT------------------TC-CGGGCCEEEEESCSSHHHHHHHHHHHH
T ss_pred HhCCCCEEeCCCCCcCcH--HHHHHHHHHHHH------------------hC-CCCCCCEEEEEcCCCccHHHHHHHHHH
Confidence 445788999765444333 333333433331 12 477 999999996 5788899989999
Q ss_pred CCCEEEEECCCC--C-hhH---H----HHcCCc---ccCHHHHhccCCEEEEec--CCCcc----------ccccccHhH
Q 007512 219 LGMHVIAHDPYA--P-ADR---A----RAIGVD---LVSFDEAIATADFISLHM--PLTPA----------TSKVLNDET 273 (600)
Q Consensus 219 ~g~~V~~~d~~~--~-~~~---a----~~~g~~---~~~l~ell~~aDvV~l~~--Pl~~~----------t~~li~~~~ 273 (600)
+|++|....|.. + .+. + ++.|.. ..++++.+++||+|..-. ....+ ...-++.+.
T Consensus 169 ~G~~v~~~~P~~~~~~~~~~~~~~~~a~~~g~~~~~~~d~~eav~~aDvvyt~~w~smg~e~~~~~~~~~~~~y~v~~e~ 248 (307)
T 3tpf_A 169 LGFEISIAMPKNYKISPEIWEFAMKQALISGAKISLGYDKFEALKDKDVVITDTWVSMGEENEKERKIKEFEGFMIDEKA 248 (307)
T ss_dssp HTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCEEEEESCHHHHHTTCSEEEECCSSCTTGGGGHHHHHHHTGGGCBCHHH
T ss_pred cCCEEEEECCCccCCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhcCCCEEEecCcccCCchhhHHHHHHHhcccccCHHH
Confidence 999999988753 2 221 1 244543 248999999999998754 11110 124468888
Q ss_pred hccCCCceEEEEcc---CCcccc
Q 007512 274 FGKMKKGVRIINVA---RGGVID 293 (600)
Q Consensus 274 l~~mk~gailvNva---rg~ivd 293 (600)
++.+|++++|.-|. ||.=|+
T Consensus 249 l~~a~~~ai~mH~lPa~Rg~EI~ 271 (307)
T 3tpf_A 249 MSVANKDAILLHCLPAYRGYEVS 271 (307)
T ss_dssp HHHSCTTCEEEECSCCCBTTTBC
T ss_pred HHhcCCCcEEECCCCCCCCceeC
Confidence 88889999999886 554443
|
| >2w37_A Ornithine carbamoyltransferase, catabolic; transcarbamylase, metal binding-site, hexamer, cytoplasm, arginine metabolism; 2.10A {Lactobacillus hilgardii} | Back alignment and structure |
|---|
Probab=96.11 E-value=0.037 Score=58.00 Aligned_cols=128 Identities=21% Similarity=0.252 Sum_probs=87.8
Q ss_pred HHhCCceeecCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCccccccccceeccCCEEEEEecC--hhHHHHHHHhh
Q 007512 140 ATEFGCLVVNAPTANTVAAAEHGIALLAAMARNVAQADASVKAGKWQRNKYVGVSLVGKTLAVLGFG--KVGSEVARRAK 217 (600)
Q Consensus 140 a~~~GI~V~n~p~~~~~~vAE~~l~lll~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktiGIIGlG--~IG~~vA~~l~ 217 (600)
|...+|+|+|+-+...-++ .+++=++.+.++ .| .+.|.+|+++|=| ++..+++..+.
T Consensus 140 A~~s~vPVINa~~~~~HPt--QaLaDl~Ti~E~------------------~g-~l~gl~va~vGD~~~rva~Sl~~~~~ 198 (359)
T 2w37_A 140 ARDSGVPVWNGLTDEWHPT--QMLADFMTVKEN------------------FG-KLQGLTLTFMGDGRNNVANSLLVTGA 198 (359)
T ss_dssp HHHSSSCEEEEECSSCCHH--HHHHHHHHHHHH------------------HS-CCTTCEEEEESCTTSHHHHHHHHHHH
T ss_pred HHhCCCCEEcCCCCCCCcc--HHHHHHHHHHHH------------------hC-CcCCeEEEEECCCccchHHHHHHHHH
Confidence 3445789999766544443 344444444431 12 5789999999996 99999999999
Q ss_pred cCCCEEEEECCCC---ChhH-------HHHcCCc---ccCHHHHhccCCEEEEecC--CCcc---------ccccccHhH
Q 007512 218 GLGMHVIAHDPYA---PADR-------ARAIGVD---LVSFDEAIATADFISLHMP--LTPA---------TSKVLNDET 273 (600)
Q Consensus 218 ~~g~~V~~~d~~~---~~~~-------a~~~g~~---~~~l~ell~~aDvV~l~~P--l~~~---------t~~li~~~~ 273 (600)
.+|++|....|.. +.+. +.+.|.. ..++++++++||+|..-.= ...+ ...-++.+.
T Consensus 199 ~lG~~v~~~~P~~l~p~~~~~~~~~~~a~~~G~~v~~~~d~~eav~~aDvvytd~w~smg~ee~~er~~~~~~y~v~~el 278 (359)
T 2w37_A 199 ILGVNIHIVAPKALFPTEETQNIAKGFAEKSGAKLVITDDLDEGLKGSNVVYTDVWVSMGESNWEERVKELTPYQVNMEA 278 (359)
T ss_dssp HHTCEEEEECCGGGSCCHHHHHHHHHHHHHHTCCEEEESCHHHHHTTCSEEEECCSCCTTCTTHHHHHHHHGGGCBCHHH
T ss_pred HcCCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEeCHHHHhcCCCEEEEcccccccccchHHHHHHhhccccCHHH
Confidence 9999999988753 2211 2255643 3489999999999988332 1110 124568888
Q ss_pred hccCC---CceEEEEccC
Q 007512 274 FGKMK---KGVRIINVAR 288 (600)
Q Consensus 274 l~~mk---~gailvNvar 288 (600)
++.+| |+++|.-|.-
T Consensus 279 l~~ak~~~~dai~MHcLP 296 (359)
T 2w37_A 279 MKKTGTPDDQLIFMHCLP 296 (359)
T ss_dssp HHTTCCCGGGCEEEECSC
T ss_pred HHhhCCCCCCEEEECCCC
Confidence 88888 8999998863
|
| >1xyg_A Putative N-acetyl-gamma-glutamyl-phosphate reduct; structural genomics, protein structure initiative, CENT eukaryotic structural genomics; 2.19A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.1 PDB: 2q49_A 2cvo_A | Back alignment and structure |
|---|
Probab=96.11 E-value=0.01 Score=62.50 Aligned_cols=85 Identities=18% Similarity=0.266 Sum_probs=55.4
Q ss_pred CCEEEEEe-cChhHHHHHHHhhcC-CCEEEEECCCCCh--hHHHH----cC-----CcccCHHHHhccCCEEEEecCCCc
Q 007512 197 GKTLAVLG-FGKVGSEVARRAKGL-GMHVIAHDPYAPA--DRARA----IG-----VDLVSFDEAIATADFISLHMPLTP 263 (600)
Q Consensus 197 gktiGIIG-lG~IG~~vA~~l~~~-g~~V~~~d~~~~~--~~a~~----~g-----~~~~~l~ell~~aDvV~l~~Pl~~ 263 (600)
..+|+|+| .|.||+.+.+.|... .+++.+.....+. ..... .+ +...+ ++.+..+|+|++|+|...
T Consensus 16 ~~kV~IiGAtG~iG~~llr~L~~~p~~elvai~~~~~~g~~~~~~~~~~~~~v~~dl~~~~-~~~~~~vDvVf~atp~~~ 94 (359)
T 1xyg_A 16 DIRIGLLGASGYTGAEIVRLLANHPHFQVTLMTADRKAGQSMESVFPHLRAQKLPTLVSVK-DADFSTVDAVFCCLPHGT 94 (359)
T ss_dssp CEEEEEECCSSHHHHHHHHHHHTCSSEEEEEEBCSTTTTSCHHHHCGGGTTSCCCCCBCGG-GCCGGGCSEEEECCCTTT
T ss_pred CcEEEEECcCCHHHHHHHHHHHcCCCcEEEEEeCchhcCCCHHHhCchhcCcccccceecc-hhHhcCCCEEEEcCCchh
Confidence 46899999 999999999999876 4688876433221 11111 11 11112 556678999999999543
Q ss_pred cccccccHhHhccCCCceEEEEccC
Q 007512 264 ATSKVLNDETFGKMKKGVRIINVAR 288 (600)
Q Consensus 264 ~t~~li~~~~l~~mk~gailvNvar 288 (600)
..+.....+.|+.+||.+.
T Consensus 95 ------s~~~a~~~~aG~~VId~sa 113 (359)
T 1xyg_A 95 ------TQEIIKELPTALKIVDLSA 113 (359)
T ss_dssp ------HHHHHHTSCTTCEEEECSS
T ss_pred ------HHHHHHHHhCCCEEEECCc
Confidence 2232222377999999975
|
| >3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=96.11 E-value=0.0062 Score=63.27 Aligned_cols=96 Identities=15% Similarity=0.105 Sum_probs=59.5
Q ss_pred cCCEEEEEecChhHHHHHHHhhcCCC--EEEEECCCCChhHH--HH--c------CCcc-cCHHHHhccCCEEEEecCCC
Q 007512 196 VGKTLAVLGFGKVGSEVARRAKGLGM--HVIAHDPYAPADRA--RA--I------GVDL-VSFDEAIATADFISLHMPLT 262 (600)
Q Consensus 196 ~gktiGIIGlG~IG~~vA~~l~~~g~--~V~~~d~~~~~~~a--~~--~------g~~~-~~l~ell~~aDvV~l~~Pl~ 262 (600)
.+++|+|||.|.||.++|..+...|+ ++..||........ .+ . .+.. .+..+.+++||+|+++....
T Consensus 8 ~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~i~~~~~~a~~~aDiVvi~ag~~ 87 (326)
T 3vku_A 8 DHQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLEDALPFTSPKKIYSAEYSDAKDADLVVITAGAP 87 (326)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEEECCGGGGTTCSEEEECCCCC
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHhhHhhhhhhcCCcEEEECcHHHhcCCCEEEECCCCC
Confidence 46799999999999999999986665 99999986422111 11 1 1111 23457899999999997632
Q ss_pred c---ccc-ccc--cH-------hHhccCCCceEEEEccCCcccc
Q 007512 263 P---ATS-KVL--ND-------ETFGKMKKGVRIINVARGGVID 293 (600)
Q Consensus 263 ~---~t~-~li--~~-------~~l~~mk~gailvNvarg~ivd 293 (600)
. +++ .++ |. +.+.+..|++++++++ ..+|
T Consensus 88 ~kpG~tR~dL~~~N~~I~~~i~~~i~~~~p~a~ilvvt--NPvd 129 (326)
T 3vku_A 88 QKPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVAA--NPVD 129 (326)
T ss_dssp ----------------CHHHHHHHHHTTTCCSEEEECS--SSHH
T ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHhcCCceEEEEcc--CchH
Confidence 1 122 112 11 1233356788999985 4444
|
| >1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=96.08 E-value=0.011 Score=61.21 Aligned_cols=110 Identities=19% Similarity=0.206 Sum_probs=65.0
Q ss_pred CCEEEEEecChhHHHHHHHhhcCCC--EEEEECCCCCh--hHHHHc--CC------cc-cCHHHHhccCCEEEEecCCCc
Q 007512 197 GKTLAVLGFGKVGSEVARRAKGLGM--HVIAHDPYAPA--DRARAI--GV------DL-VSFDEAIATADFISLHMPLTP 263 (600)
Q Consensus 197 gktiGIIGlG~IG~~vA~~l~~~g~--~V~~~d~~~~~--~~a~~~--g~------~~-~~l~ell~~aDvV~l~~Pl~~ 263 (600)
.++|+|||.|.+|.++|..+...|. +|..||..... ..+.++ +. .. .+-.+.+++||+|+++++...
T Consensus 7 ~~KI~IiGaG~vG~~~a~~l~~~~~~~ev~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~~~~~~a~~~aDvVii~~g~p~ 86 (318)
T 1y6j_A 7 RSKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYAGDYSDVKDCDVIVVTAGANR 86 (318)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC--CGGGGTTCSEEEECCCC--
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHhHHhcCCeEEEECCHHHhCCCCEEEEcCCCCC
Confidence 3689999999999999999987776 99999986522 112221 11 01 123567999999999998432
Q ss_pred cccccc-------c----H---hHhccCCCceEEEEccCCcccc--HHHHHHh--HhcCCceEE
Q 007512 264 ATSKVL-------N----D---ETFGKMKKGVRIINVARGGVID--EEALVRA--LDSGRVAQA 309 (600)
Q Consensus 264 ~t~~li-------~----~---~~l~~mk~gailvNvarg~ivd--e~aL~~a--L~~g~i~ga 309 (600)
..++- | . +.+....|+++++++ ...++ ...+.+. +...++.|.
T Consensus 87 -k~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~--tNPv~~~~~~~~k~s~~p~~rviG~ 147 (318)
T 1y6j_A 87 -KPGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILVV--SNPVDIITYMIQKWSGLPVGKVIGS 147 (318)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHCCSCEEEEC--SSSHHHHHHHHHHHHTCCTTTEEEC
T ss_pred -CCCcCHHHHHHhhHHHHHHHHHHHHHhCCCcEEEEe--cCcHHHHHHHHHHHcCCCHHHEecc
Confidence 22220 0 0 122223689999997 34444 3333333 344567665
|
| >1h6d_A Precursor form of glucose-fructose oxidoreductase; protein translocation, periplasmic oxidoreductase, signal peptide, ligand binding,; HET: NDP; 2.05A {Zymomonas mobilis} SCOP: c.2.1.3 d.81.1.5 PDB: 1h6b_A* 1h6a_A* 1h6c_A* 1ryd_A* 1rye_A* 1ofg_A* 1evj_A* | Back alignment and structure |
|---|
Probab=96.07 E-value=0.0059 Score=65.75 Aligned_cols=64 Identities=22% Similarity=0.254 Sum_probs=49.1
Q ss_pred CEEEEEecChhHH-HHHHHhhcC-CCEEE-EECCCCCh--hHHHHcCCc------ccCHHHHhc--cCCEEEEecCC
Q 007512 198 KTLAVLGFGKVGS-EVARRAKGL-GMHVI-AHDPYAPA--DRARAIGVD------LVSFDEAIA--TADFISLHMPL 261 (600)
Q Consensus 198 ktiGIIGlG~IG~-~vA~~l~~~-g~~V~-~~d~~~~~--~~a~~~g~~------~~~l~ell~--~aDvV~l~~Pl 261 (600)
.+|||||+|.||+ .+++.++.. ++++. ++|++... ..+...|+. +.++++++. ++|+|++|+|.
T Consensus 84 irigiIG~G~~g~~~~~~~l~~~~~~~lvav~d~~~~~~~~~a~~~g~~~~~~~~~~~~~~ll~~~~vD~V~iatp~ 160 (433)
T 1h6d_A 84 FGYAIVGLGKYALNQILPGFAGCQHSRIEALVSGNAEKAKIVAAEYGVDPRKIYDYSNFDKIAKDPKIDAVYIILPN 160 (433)
T ss_dssp EEEEEECCSHHHHHTHHHHTTTCSSEEEEEEECSCHHHHHHHHHHTTCCGGGEECSSSGGGGGGCTTCCEEEECSCG
T ss_pred eEEEEECCcHHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHHhCCCcccccccCCHHHHhcCCCCCEEEEcCCc
Confidence 4899999999997 899998865 67765 67887522 234455764 458999987 79999999993
|
| >1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A* | Back alignment and structure |
|---|
Probab=96.07 E-value=0.017 Score=59.28 Aligned_cols=63 Identities=19% Similarity=0.230 Sum_probs=46.6
Q ss_pred CEEEEEecChhHHHHHHHhhcCCC-EEEEECCCCChhHH--HH--c-------CC--cc-cCHHHHhccCCEEEEecCC
Q 007512 198 KTLAVLGFGKVGSEVARRAKGLGM-HVIAHDPYAPADRA--RA--I-------GV--DL-VSFDEAIATADFISLHMPL 261 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~g~-~V~~~d~~~~~~~a--~~--~-------g~--~~-~~l~ell~~aDvV~l~~Pl 261 (600)
++|+|||.|.+|..+|..+...|. +|..+|........ .+ . .. .. .++ +.+++||+|+++++.
T Consensus 3 ~kI~VIGaG~vG~~~a~~la~~g~~~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d~-~a~~~aD~Vi~a~g~ 80 (309)
T 1ur5_A 3 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGTNNY-ADTANSDVIVVTSGA 80 (309)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCG-GGGTTCSEEEECCCC
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCeEEEEeCCccHHHHHHHhHHHhHhhcCCCeEEEECCCH-HHHCCCCEEEEcCCC
Confidence 589999999999999999987775 89999987532211 11 1 11 12 356 679999999999863
|
| >3gd5_A Otcase, ornithine carbamoyltransferase; structural genomics, NYSGXRC, target 9454P, operon, amino-acid biosynthesis, ARGI biosynthesis; 2.10A {Gloeobacter violaceus} | Back alignment and structure |
|---|
Probab=96.06 E-value=0.055 Score=55.94 Aligned_cols=125 Identities=22% Similarity=0.235 Sum_probs=82.4
Q ss_pred hCCceeecCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCccccccccceeccCCEEEEEec-ChhHHHHHHHhhcCC
Q 007512 142 EFGCLVVNAPTANTVAAAEHGIALLAAMARNVAQADASVKAGKWQRNKYVGVSLVGKTLAVLGF-GKVGSEVARRAKGLG 220 (600)
Q Consensus 142 ~~GI~V~n~p~~~~~~vAE~~l~lll~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktiGIIGl-G~IG~~vA~~l~~~g 220 (600)
..+|+|+|+-....-++ .+++=++.+.++ .| .+.|.+|++||= +++..+.+..+..+|
T Consensus 123 ~~~vPVINag~~~~HPt--QaLaDl~Ti~e~------------------~g-~l~glkva~vGD~~rva~Sl~~~~~~~G 181 (323)
T 3gd5_A 123 YAGIPVINALTDHEHPC--QVVADLLTIREN------------------FG-RLAGLKLAYVGDGNNVAHSLLLGCAKVG 181 (323)
T ss_dssp HHCSCEEEEECSSCCHH--HHHHHHHHHHHH------------------HS-CCTTCEEEEESCCCHHHHHHHHHHHHHT
T ss_pred hCCCCEEeCCCCCCCcH--HHHHHHHHHHHH------------------hC-CCCCCEEEEECCCCcHHHHHHHHHHHcC
Confidence 35788999765443333 333333333331 12 478999999986 688889999998999
Q ss_pred CEEEEECCCC--C-hh---H----HHHcCCc---ccCHHHHhccCCEEEEecCCC--cc----------ccccccHhHhc
Q 007512 221 MHVIAHDPYA--P-AD---R----ARAIGVD---LVSFDEAIATADFISLHMPLT--PA----------TSKVLNDETFG 275 (600)
Q Consensus 221 ~~V~~~d~~~--~-~~---~----a~~~g~~---~~~l~ell~~aDvV~l~~Pl~--~~----------t~~li~~~~l~ 275 (600)
++|....|.. + .+ . +.+.|.. ..++++.+++||+|..-.=.. .+ ...-++.+.++
T Consensus 182 ~~v~~~~P~~~~~~~~~~~~~~~~a~~~g~~v~~~~d~~eav~~aDvvyt~~wqs~g~~~~~~~~~~~~~~y~vt~ell~ 261 (323)
T 3gd5_A 182 MSIAVATPEGFTPDPAVSARASEIAGRTGAEVQILRDPFEAARGAHILYTDVWTSMGQEAETQHRLQLFEQYQINAALLN 261 (323)
T ss_dssp CEEEEECCTTCCCCHHHHHHHHHHHHHHTCCEEEESCHHHHHTTCSEEEECCCC---------CCHHHHTTCCBCHHHHH
T ss_pred CEEEEECCCcccCCHHHHHHHHHHHHHcCCeEEEECCHHHHhcCCCEEEEeceecCCCcccchHHHHHhhccCCCHHHHh
Confidence 9999988753 2 21 1 2234543 248999999999997753111 00 12346888888
Q ss_pred cCCCceEEEEcc
Q 007512 276 KMKKGVRIINVA 287 (600)
Q Consensus 276 ~mk~gailvNva 287 (600)
.+|++++|.-|.
T Consensus 262 ~ak~dai~mHcl 273 (323)
T 3gd5_A 262 CAAAEAIVLHCL 273 (323)
T ss_dssp TSCTTCEEEECS
T ss_pred hcCCCcEEECCC
Confidence 889999998886
|
| >2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.05 E-value=0.0055 Score=66.78 Aligned_cols=93 Identities=16% Similarity=0.241 Sum_probs=57.9
Q ss_pred ccceeccCCEEEEEecChhHHHHHHHhhcC-CCEEEEECCCCCh-hH-HHHcCCc-----cc---CHHHHhccCCEEEEe
Q 007512 190 YVGVSLVGKTLAVLGFGKVGSEVARRAKGL-GMHVIAHDPYAPA-DR-ARAIGVD-----LV---SFDEAIATADFISLH 258 (600)
Q Consensus 190 ~~g~~l~gktiGIIGlG~IG~~vA~~l~~~-g~~V~~~d~~~~~-~~-a~~~g~~-----~~---~l~ell~~aDvV~l~ 258 (600)
+.+..+.+++|.|+|.|.+|+.+++.|... |.+|.++|+.... +. +...++. .. ++.++++.+|+|+.|
T Consensus 16 ~~~~~l~~k~VlIiGAGgiG~aia~~L~~~~g~~V~v~~R~~~ka~~la~~~~~~~~~~D~~d~~~l~~~l~~~DvVIn~ 95 (467)
T 2axq_A 16 HIEGRHMGKNVLLLGSGFVAQPVIDTLAANDDINVTVACRTLANAQALAKPSGSKAISLDVTDDSALDKVLADNDVVISL 95 (467)
T ss_dssp -------CEEEEEECCSTTHHHHHHHHHTSTTEEEEEEESSHHHHHHHHGGGTCEEEECCTTCHHHHHHHHHTSSEEEEC
T ss_pred ccccCCCCCEEEEECChHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhcCCcEEEEecCCHHHHHHHHcCCCEEEEC
Confidence 456788899999999999999999999976 7899999987532 11 1122332 11 355778899999999
Q ss_pred cCCCccccccccHhHhccCCCceEEEEcc
Q 007512 259 MPLTPATSKVLNDETFGKMKKGVRIINVA 287 (600)
Q Consensus 259 ~Pl~~~t~~li~~~~l~~mk~gailvNva 287 (600)
+|.... .. + ..+.+++|..+++++
T Consensus 96 tp~~~~-~~-v---~~a~l~~g~~vvd~~ 119 (467)
T 2axq_A 96 IPYTFH-PN-V---VKSAIRTKTDVVTSS 119 (467)
T ss_dssp SCGGGH-HH-H---HHHHHHHTCEEEECS
T ss_pred Cchhhh-HH-H---HHHHHhcCCEEEEee
Confidence 995421 11 1 112234566666654
|
| >2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A | Back alignment and structure |
|---|
Probab=96.05 E-value=0.017 Score=62.76 Aligned_cols=93 Identities=23% Similarity=0.233 Sum_probs=67.4
Q ss_pred eccCCEEEEEecCh----------hHHHHHHHhhcCCCEEEEECCCCChhHHHHc--------------CCccc-CHHHH
Q 007512 194 SLVGKTLAVLGFGK----------VGSEVARRAKGLGMHVIAHDPYAPADRARAI--------------GVDLV-SFDEA 248 (600)
Q Consensus 194 ~l~gktiGIIGlG~----------IG~~vA~~l~~~g~~V~~~d~~~~~~~a~~~--------------g~~~~-~l~el 248 (600)
.+.|++|+|+|+.- -...+++.|...|.+|.+|||+...+..... ++.+. +..+.
T Consensus 326 ~~~~~~v~vlGlafK~~~dD~R~sp~~~i~~~L~~~g~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (467)
T 2q3e_A 326 TVTDKKIAILGFAFKKDTGDTRESSSIYISKYLMDEGAHLHIYDPKVPREQIVVDLSHPGVSEDDQVSRLVTISKDPYEA 405 (467)
T ss_dssp CCTTCEEEEECCSSSTTCCCCTTCHHHHHHHHHHHTTCEEEEECSSSCHHHHHHHHCC------CHHHHHEEECSSHHHH
T ss_pred ccCCCEEEEEeeccCCCCcchhhChHHHHHHHHHHCCCEEEEEcCccCHHHHhhhhccccccccccccCceeecCCHHHH
Confidence 48899999999974 6788999999999999999999754432111 23333 67888
Q ss_pred hccCCEEEEecCCCccccccccHhHh-ccCCCceEEEEccCC
Q 007512 249 IATADFISLHMPLTPATSKVLNDETF-GKMKKGVRIINVARG 289 (600)
Q Consensus 249 l~~aDvV~l~~Pl~~~t~~li~~~~l-~~mk~gailvNvarg 289 (600)
++.||+|++++.- ++-+. ++-..+ ..|+...+|+|+ |+
T Consensus 406 ~~~ad~~vi~t~~-~~f~~-~~~~~~~~~~~~~~~i~D~-r~ 444 (467)
T 2q3e_A 406 CDGAHAVVICTEW-DMFKE-LDYERIHKKMLKPAFIFDG-RR 444 (467)
T ss_dssp HTTCSEEEECSCC-GGGGG-SCHHHHHHHSCSSCEEEES-SC
T ss_pred HhCCcEEEEecCC-hhhhc-CCHHHHHHhcCCCCEEEeC-CC
Confidence 9999999999984 33333 344433 457776668886 44
|
| >1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=95.96 E-value=0.015 Score=58.87 Aligned_cols=65 Identities=17% Similarity=0.158 Sum_probs=49.1
Q ss_pred cCCEEEEEecChhHHHHHHHhhcCCC-EEEEECCCCCh--hHHHHcCCccc-CHHHHhccCCEEEEecCCC
Q 007512 196 VGKTLAVLGFGKVGSEVARRAKGLGM-HVIAHDPYAPA--DRARAIGVDLV-SFDEAIATADFISLHMPLT 262 (600)
Q Consensus 196 ~gktiGIIGlG~IG~~vA~~l~~~g~-~V~~~d~~~~~--~~a~~~g~~~~-~l~ell~~aDvV~l~~Pl~ 262 (600)
.++++.|+|.|.+|+.++..|...|. +|.++++.... ..+.+.+..+. ++. +.++|+|+.++|..
T Consensus 118 ~~~~vlvlGaGgaarav~~~L~~~G~~~i~v~nRt~~ka~~la~~~~~~~~~~~~--~~~~DivInaTp~g 186 (271)
T 1npy_A 118 KNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALYGYAYINSLE--NQQADILVNVTSIG 186 (271)
T ss_dssp TTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCHHHHHHHHHHHTCEEESCCT--TCCCSEEEECSSTT
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCccchhhh--cccCCEEEECCCCC
Confidence 47899999999999999999999997 79999987522 23334454332 222 47899999999965
|
| >3i23_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Enterococcus faecalis} PDB: 3fd8_A* 3hnp_A | Back alignment and structure |
|---|
Probab=95.96 E-value=0.01 Score=61.79 Aligned_cols=63 Identities=19% Similarity=0.282 Sum_probs=47.8
Q ss_pred CEEEEEecChhHH-HHHHHhhcC-CCEEE-EECCCCChhHHHH---cCCc-ccCHHHHhcc--CCEEEEecC
Q 007512 198 KTLAVLGFGKVGS-EVARRAKGL-GMHVI-AHDPYAPADRARA---IGVD-LVSFDEAIAT--ADFISLHMP 260 (600)
Q Consensus 198 ktiGIIGlG~IG~-~vA~~l~~~-g~~V~-~~d~~~~~~~a~~---~g~~-~~~l~ell~~--aDvV~l~~P 260 (600)
.+|||||+|.||+ ..+..++.. +++|. ++|+......+.+ .++. +.++++++.+ .|+|++|+|
T Consensus 3 ~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~a~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp 74 (349)
T 3i23_A 3 VKMGFIGFGKSANRYHLPYVMIRETLEVKTIFDLHVNEKAAAPFKEKGVNFTADLNELLTDPEIELITICTP 74 (349)
T ss_dssp EEEEEECCSHHHHHTTHHHHTTCTTEEEEEEECTTCCHHHHHHHHTTTCEEESCTHHHHSCTTCCEEEECSC
T ss_pred eEEEEEccCHHHHHHHHHHHhhCCCeEEEEEECCCHHHHHHHhhCCCCCeEECCHHHHhcCCCCCEEEEeCC
Confidence 3799999999999 577777765 78886 5787743444444 3554 4589999986 899999999
|
| >3d6n_B Aspartate carbamoyltransferase; reactor, chamber, pores, internal cavity, hydrolase, metal-B pyrimidine biosynthesis, hydrolase-transferase; HET: FLC; 2.30A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=95.93 E-value=0.037 Score=56.43 Aligned_cols=99 Identities=18% Similarity=0.243 Sum_probs=69.4
Q ss_pred HHhCCceeec-CCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCccccccccceeccCCEEEEEec---ChhHHHHHHH
Q 007512 140 ATEFGCLVVN-APTANTVAAAEHGIALLAAMARNVAQADASVKAGKWQRNKYVGVSLVGKTLAVLGF---GKVGSEVARR 215 (600)
Q Consensus 140 a~~~GI~V~n-~p~~~~~~vAE~~l~lll~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktiGIIGl---G~IG~~vA~~ 215 (600)
|+..+|+|+| .-|...-++ .+++=++.+.++ .| .+.|.+|+++|= +++..+.+..
T Consensus 109 a~~~~vPVINAG~g~~~HPt--QaLaDl~Ti~e~------------------~g-~l~gl~va~vGDl~~~rva~Sl~~~ 167 (291)
T 3d6n_B 109 VKSLNLRLVNAGDGTHQHPS--QGLIDFFTIKEH------------------FG-EVKDLRVLYVGDIKHSRVFRSGAPL 167 (291)
T ss_dssp HHTCSSEEEEEEETTTBCHH--HHHHHHHHHHHH------------------HS-CCTTCEEEEESCCTTCHHHHHHHHH
T ss_pred HHhCCCCEEeCccCCCcCcH--HHHHHHHHHHHH------------------hC-CcCCcEEEEECCCCCCchHHHHHHH
Confidence 3445689999 434444443 333334444331 12 478999999997 8999999999
Q ss_pred hhcCCCEEEEECCCC--ChhHHHHcCCcc-cCHHHHhccCCEEEEecCC
Q 007512 216 AKGLGMHVIAHDPYA--PADRARAIGVDL-VSFDEAIATADFISLHMPL 261 (600)
Q Consensus 216 l~~~g~~V~~~d~~~--~~~~a~~~g~~~-~~l~ell~~aDvV~l~~Pl 261 (600)
+..+|++|....|.. +.+ ..+.|+.. .++++.+++||+|.. +-.
T Consensus 168 ~~~~g~~v~~~~P~~~~p~~-~~~~g~~~~~d~~eav~~aDvvy~-~~~ 214 (291)
T 3d6n_B 168 LNMFGAKIGVCGPKTLIPRD-VEVFKVDVFDDVDKGIDWADVVIW-LRL 214 (291)
T ss_dssp HHHTTCEEEEESCGGGSCTT-GGGGCEEEESSHHHHHHHCSEEEE-CCC
T ss_pred HHHCCCEEEEECCchhCCch-HHHCCCEEEcCHHHHhCCCCEEEE-eCc
Confidence 999999999988754 222 22456553 489999999999998 664
|
| >3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural genomics, center FO structural genomics of infectious diseases; HET: MSE; 2.75A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=95.92 E-value=0.0065 Score=63.29 Aligned_cols=65 Identities=17% Similarity=0.214 Sum_probs=47.0
Q ss_pred CEEEEEecChhHHH-HHHHhhcC-CCEEE-EECCCCChhHHHHcCCc-ccCHHHHhcc--CCEEEEecCCC
Q 007512 198 KTLAVLGFGKVGSE-VARRAKGL-GMHVI-AHDPYAPADRARAIGVD-LVSFDEAIAT--ADFISLHMPLT 262 (600)
Q Consensus 198 ktiGIIGlG~IG~~-vA~~l~~~-g~~V~-~~d~~~~~~~a~~~g~~-~~~l~ell~~--aDvV~l~~Pl~ 262 (600)
.+|||||+|.||+. .++.++.. ++++. ++|++.....+...++. +.++++++.+ .|+|++|+|..
T Consensus 8 ~rvgiiG~G~~g~~~~~~~~~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~ 78 (352)
T 3kux_A 8 IKVGLLGYGYASKTFHAPLIMGTPGLELAGVSSSDASKVHADWPAIPVVSDPQMLFNDPSIDLIVIPTPND 78 (352)
T ss_dssp EEEEEECCSHHHHHTHHHHHHTSTTEEEEEEECSCHHHHHTTCSSCCEESCHHHHHHCSSCCEEEECSCTT
T ss_pred ceEEEECCCHHHHHHHHHHHhhCCCcEEEEEECCCHHHHHhhCCCCceECCHHHHhcCCCCCEEEEeCChH
Confidence 47999999999997 78888766 78886 47876422211112333 3589999976 99999999943
|
| >3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=95.92 E-value=0.012 Score=60.77 Aligned_cols=95 Identities=17% Similarity=0.184 Sum_probs=61.0
Q ss_pred cCCEEEEEecChhHHHHHHHhhcCCC-EEEEECCCC--ChhHHHH-----------cCC--cccCHHHHhccCCEEEEec
Q 007512 196 VGKTLAVLGFGKVGSEVARRAKGLGM-HVIAHDPYA--PADRARA-----------IGV--DLVSFDEAIATADFISLHM 259 (600)
Q Consensus 196 ~gktiGIIGlG~IG~~vA~~l~~~g~-~V~~~d~~~--~~~~a~~-----------~g~--~~~~l~ell~~aDvV~l~~ 259 (600)
..++|+|||.|.+|..+|..+...|+ +|..||... ....... ... ...+-.+.+++||+|+++.
T Consensus 7 ~~~kv~ViGaG~vG~~ia~~l~~~g~~~v~l~D~~~~~~~~~g~a~dl~~~~~~~~~~~~i~~t~d~~a~~~aDvVIiaa 86 (315)
T 3tl2_A 7 KRKKVSVIGAGFTGATTAFLLAQKELADVVLVDIPQLENPTKGKALDMLEASPVQGFDANIIGTSDYADTADSDVVVITA 86 (315)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCGGGHHHHHHHHHHHHHHHHHHTCCCCEEEESCGGGGTTCSEEEECC
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeccchHHHHHHhhhhHHHhhhhccCCCEEEEcCCHHHhCCCCEEEEeC
Confidence 46799999999999999999988888 999999873 1111110 011 1122246789999999998
Q ss_pred CCCcccccc-----c--cH-------hHhccCCCceEEEEccCCcccc
Q 007512 260 PLTPATSKV-----L--ND-------ETFGKMKKGVRIINVARGGVID 293 (600)
Q Consensus 260 Pl~~~t~~l-----i--~~-------~~l~~mk~gailvNvarg~ivd 293 (600)
... ...++ + |. +.+....|++++++++ ..+|
T Consensus 87 g~p-~kpg~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vlvvs--NPvd 131 (315)
T 3tl2_A 87 GIA-RKPGMSRDDLVATNSKIMKSITRDIAKHSPNAIIVVLT--NPVD 131 (315)
T ss_dssp SCC-CCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECC--SSHH
T ss_pred CCC-CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEECC--ChHH
Confidence 632 21221 1 11 1222346889999986 3444
|
| >1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A | Back alignment and structure |
|---|
Probab=95.92 E-value=0.012 Score=61.27 Aligned_cols=89 Identities=22% Similarity=0.301 Sum_probs=66.1
Q ss_pred cCCEEEEEecChhHHHHHHHhhcCCCEEEEECCCC-ChhHHHHcCCccc-------CHHHHh-ccCCEEEEecCCC-ccc
Q 007512 196 VGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYA-PADRARAIGVDLV-------SFDEAI-ATADFISLHMPLT-PAT 265 (600)
Q Consensus 196 ~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~-~~~~a~~~g~~~~-------~l~ell-~~aDvV~l~~Pl~-~~t 265 (600)
.|++|.|+|.|.||...++.++.+|++|++.++.. ..+.++++|...+ ++.+.+ ...|+|+-+++.+ +.+
T Consensus 179 ~g~~VlV~GaG~vG~~~~qlak~~Ga~Vi~~~~~~~~~~~~~~lGa~~v~~~~~~~~~~~~~~~~~D~vid~~g~~~~~~ 258 (360)
T 1piw_A 179 PGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMKMGADHYIATLEEGDWGEKYFDTFDLIVVCASSLTDID 258 (360)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHHTCSEEEEGGGTSCHHHHSCSCEEEEEECCSCSTTCC
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHcCCCEEEcCcCchHHHHHhhcCCCEEEECCCCCcHHH
Confidence 47899999999999999999999999999998766 5667778887432 222222 4689999988752 111
Q ss_pred cccccHhHhccCCCceEEEEccC
Q 007512 266 SKVLNDETFGKMKKGVRIINVAR 288 (600)
Q Consensus 266 ~~li~~~~l~~mk~gailvNvar 288 (600)
-...+..|+++..++.++.
T Consensus 259 ----~~~~~~~l~~~G~iv~~g~ 277 (360)
T 1piw_A 259 ----FNIMPKAMKVGGRIVSISI 277 (360)
T ss_dssp ----TTTGGGGEEEEEEEEECCC
T ss_pred ----HHHHHHHhcCCCEEEEecC
Confidence 2345667889999998875
|
| >3gdo_A Uncharacterized oxidoreductase YVAA; structural genomics, putative oxidoreductase YVAA, oxidoredu PSI-2, protein structure initiative; 2.03A {Bacillus subtilis subsp} PDB: 3gfg_A | Back alignment and structure |
|---|
Probab=95.89 E-value=0.007 Score=63.32 Aligned_cols=64 Identities=14% Similarity=0.246 Sum_probs=48.0
Q ss_pred CEEEEEecChhHHH-HHHHhhcC-CCEEEE-ECCCCChhHHHHc-CCc-ccCHHHHhc--cCCEEEEecCCC
Q 007512 198 KTLAVLGFGKVGSE-VARRAKGL-GMHVIA-HDPYAPADRARAI-GVD-LVSFDEAIA--TADFISLHMPLT 262 (600)
Q Consensus 198 ktiGIIGlG~IG~~-vA~~l~~~-g~~V~~-~d~~~~~~~a~~~-g~~-~~~l~ell~--~aDvV~l~~Pl~ 262 (600)
.+|||||+|.||+. .++.++.. ++++.+ +|++... .+... ++. +.+++++++ +.|+|++|+|..
T Consensus 6 ~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~-~~~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~ 76 (358)
T 3gdo_A 6 IKVGILGYGLSGSVFHGPLLDVLDEYQISKIMTSRTEE-VKRDFPDAEVVHELEEITNDPAIELVIVTTPSG 76 (358)
T ss_dssp EEEEEECCSHHHHHTTHHHHTTCTTEEEEEEECSCHHH-HHHHCTTSEEESSTHHHHTCTTCCEEEECSCTT
T ss_pred ceEEEEccCHHHHHHHHHHHhhCCCeEEEEEEcCCHHH-HHhhCCCCceECCHHHHhcCCCCCEEEEcCCcH
Confidence 48999999999997 78888766 788864 6876522 33344 444 358999998 789999999943
|
| >3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics; 2.50A {Bordetella bronchiseptica} | Back alignment and structure |
|---|
Probab=95.86 E-value=0.0065 Score=64.25 Aligned_cols=64 Identities=16% Similarity=0.297 Sum_probs=50.2
Q ss_pred CEEEEEecC-hhHHHHHHHhhcC-CCEEEE-ECCCCCh--hHHHHcCCc-ccCHHHHhcc--CCEEEEecCC
Q 007512 198 KTLAVLGFG-KVGSEVARRAKGL-GMHVIA-HDPYAPA--DRARAIGVD-LVSFDEAIAT--ADFISLHMPL 261 (600)
Q Consensus 198 ktiGIIGlG-~IG~~vA~~l~~~-g~~V~~-~d~~~~~--~~a~~~g~~-~~~l~ell~~--aDvV~l~~Pl 261 (600)
.+|||||+| .+|...+..++.. ++++.+ +|++... ..+.+.|+. +.++++++++ .|+|++++|.
T Consensus 3 ~rigiiG~G~~~~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~g~~~~~~~~ell~~~~vD~V~i~tp~ 74 (387)
T 3moi_A 3 IRFGICGLGFAGSVLMAPAMRHHPDAQIVAACDPNEDVRERFGKEYGIPVFATLAEMMQHVQMDAVYIASPH 74 (387)
T ss_dssp EEEEEECCSHHHHTTHHHHHHHCTTEEEEEEECSCHHHHHHHHHHHTCCEESSHHHHHHHSCCSEEEECSCG
T ss_pred eEEEEEeCCHHHHHHHHHHHHhCCCeEEEEEEeCCHHHHHHHHHHcCCCeECCHHHHHcCCCCCEEEEcCCc
Confidence 479999999 9999999999865 678774 7887522 334566776 4589999975 9999999993
|
| >2p2s_A Putative oxidoreductase; YP_050235.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.25A {Pectobacterium atrosepticum SCRI1043} | Back alignment and structure |
|---|
Probab=95.86 E-value=0.019 Score=59.24 Aligned_cols=64 Identities=14% Similarity=0.196 Sum_probs=48.3
Q ss_pred CEEEEEecChhHH-HHHHHhhcCCCEEE-EECCCCC--hhHHHHc-CCc-ccCHHHHhc--cCCEEEEecCC
Q 007512 198 KTLAVLGFGKVGS-EVARRAKGLGMHVI-AHDPYAP--ADRARAI-GVD-LVSFDEAIA--TADFISLHMPL 261 (600)
Q Consensus 198 ktiGIIGlG~IG~-~vA~~l~~~g~~V~-~~d~~~~--~~~a~~~-g~~-~~~l~ell~--~aDvV~l~~Pl 261 (600)
.+|||||+|.+|. .+++.++..++++. ++|++.. ...+... +.. +.+++++++ +.|+|++|+|.
T Consensus 5 ~rvgiiG~G~~~~~~~~~~l~~~~~~lvav~d~~~~~~~~~a~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~ 76 (336)
T 2p2s_A 5 IRFAAIGLAHNHIYDMCQQLIDAGAELAGVFESDSDNRAKFTSLFPSVPFAASAEQLITDASIDLIACAVIP 76 (336)
T ss_dssp CEEEEECCSSTHHHHHHHHHHHTTCEEEEEECSCTTSCHHHHHHSTTCCBCSCHHHHHTCTTCCEEEECSCG
T ss_pred cEEEEECCChHHHHHhhhhhcCCCcEEEEEeCCCHHHHHHHHHhcCCCcccCCHHHHhhCCCCCEEEEeCCh
Confidence 4899999999996 67777776688875 5788763 2344555 443 458999997 69999999993
|
| >3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH, oxidoreductase; 1.80A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=95.86 E-value=0.021 Score=56.80 Aligned_cols=80 Identities=14% Similarity=0.167 Sum_probs=53.8
Q ss_pred CEEEEEecChhHHHHHHHhhcCCCEEEE-ECCCCChhHHHHcCCcc-cCHHHHhccCCEEEEecCCCccccccccHhHhc
Q 007512 198 KTLAVLGFGKVGSEVARRAKGLGMHVIA-HDPYAPADRARAIGVDL-VSFDEAIATADFISLHMPLTPATSKVLNDETFG 275 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~g~~V~~-~d~~~~~~~a~~~g~~~-~~l~ell~~aDvV~l~~Pl~~~t~~li~~~~l~ 275 (600)
.+|+|+|+|+||+.+++.+...+.++.+ +|+.... ..|+.. .++++++ ++|+|+-+++ ...+. +.+.
T Consensus 4 mkI~ViGaGrMG~~i~~~l~~~~~eLva~~d~~~~~----~~gv~v~~dl~~l~-~~DVvIDft~-p~a~~-----~~~~ 72 (243)
T 3qy9_A 4 MKILLIGYGAMNQRVARLAEEKGHEIVGVIENTPKA----TTPYQQYQHIADVK-GADVAIDFSN-PNLLF-----PLLD 72 (243)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEECSSCC------CCSCBCSCTTTCT-TCSEEEECSC-HHHHH-----HHHT
T ss_pred eEEEEECcCHHHHHHHHHHHhCCCEEEEEEecCccc----cCCCceeCCHHHHh-CCCEEEEeCC-hHHHH-----HHHH
Confidence 5899999999999999999866447765 7876542 356654 3788888 9999884443 11122 2233
Q ss_pred cCCCceEEEEccCC
Q 007512 276 KMKKGVRIINVARG 289 (600)
Q Consensus 276 ~mk~gailvNvarg 289 (600)
++.|.-+|-...|
T Consensus 73 -l~~g~~vVigTTG 85 (243)
T 3qy9_A 73 -EDFHLPLVVATTG 85 (243)
T ss_dssp -SCCCCCEEECCCS
T ss_pred -HhcCCceEeCCCC
Confidence 6777766654444
|
| >2czc_A Glyceraldehyde-3-phosphate dehydrogenase; glycolysis, NAD, oxidoreductase, structural genomics; HET: NAD; 2.00A {Pyrococcus horikoshii} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=95.85 E-value=0.013 Score=61.06 Aligned_cols=65 Identities=23% Similarity=0.370 Sum_probs=47.0
Q ss_pred CEEEEEecChhHHHHHHHhhcC-CCEEEE-ECCCCC--hhHHHHcCCc-------------------ccCHHHHhccCCE
Q 007512 198 KTLAVLGFGKVGSEVARRAKGL-GMHVIA-HDPYAP--ADRARAIGVD-------------------LVSFDEAIATADF 254 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~-g~~V~~-~d~~~~--~~~a~~~g~~-------------------~~~l~ell~~aDv 254 (600)
.+|||+|+|.||+.+++.+... ++++.+ +|+... ...++..|+. ..++++++.++|+
T Consensus 3 irVgIiG~G~iG~~~~r~l~~~~~~elvav~d~~~~~~~~~~~~~g~~~~~~~~~~v~~~~~~~~~v~~d~~~l~~~vDv 82 (334)
T 2czc_A 3 VKVGVNGYGTIGKRVAYAVTKQDDMELIGITKTKPDFEAYRAKELGIPVYAASEEFIPRFEKEGFEVAGTLNDLLEKVDI 82 (334)
T ss_dssp EEEEEECCSHHHHHHHHHHHTCTTEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHHTCCCSCBHHHHHTTCSE
T ss_pred cEEEEEeEhHHHHHHHHHHhcCCCCEEEEEEcCCHHHHHHHHHhcCccccccccccceeccCCceEEcCcHHHhccCCCE
Confidence 3799999999999999999865 678766 465432 1223344421 1368888889999
Q ss_pred EEEecCCC
Q 007512 255 ISLHMPLT 262 (600)
Q Consensus 255 V~l~~Pl~ 262 (600)
|+.|+|..
T Consensus 83 V~~aTp~~ 90 (334)
T 2czc_A 83 IVDATPGG 90 (334)
T ss_dssp EEECCSTT
T ss_pred EEECCCcc
Confidence 99999944
|
| >1js1_X Transcarbamylase; alpha/beta topology, two domains, transferase; 2.00A {Bacteroides fragilis} SCOP: c.78.1.1 c.78.1.1 PDB: 2fg6_X* 2fg7_X* 2g7m_X* | Back alignment and structure |
|---|
Probab=95.83 E-value=0.086 Score=54.49 Aligned_cols=127 Identities=12% Similarity=0.016 Sum_probs=81.4
Q ss_pred HHHhCCceeecCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCccccccccc-eeccCCEEEE-----EecChhHHHH
Q 007512 139 AATEFGCLVVNAPTANTVAAAEHGIALLAAMARNVAQADASVKAGKWQRNKYVG-VSLVGKTLAV-----LGFGKVGSEV 212 (600)
Q Consensus 139 aa~~~GI~V~n~p~~~~~~vAE~~l~lll~~~R~i~~~~~~~~~g~W~~~~~~g-~~l~gktiGI-----IGlG~IG~~v 212 (600)
.|+..+|+|+|+-+...-++ .+++=++.+.++ .| ..+. .+|++ +|=+++..+.
T Consensus 130 lA~~~~vPVINa~~~~~HPt--QaLaDl~Ti~e~------------------~g~~~l~-l~ia~a~~~~vGD~rva~Sl 188 (324)
T 1js1_X 130 FIQHSGRPVFSMEAATRHPL--QSFADLITIEEY------------------KKTARPK-VVMTWAPHPRPLPQAVPNSF 188 (324)
T ss_dssp HHHHSSSCEEESSCSSCCHH--HHHHHHHHHHHH------------------CSSSSCE-EEEECCCCSSCCCSHHHHHH
T ss_pred HHhhCCCCEEECCCCCCCcH--HHHHHHHHHHHH------------------cCCCCee-EEEEEEcccccCCcchHHHH
Confidence 34456799999876554444 344444444432 12 1356 79999 9999999999
Q ss_pred HHHhhcCCCEEEEECCCC-ChhHHHHcCCcc-cCHHHHhccCCEEEEecCCC--c---------cccccccHhHhccCCC
Q 007512 213 ARRAKGLGMHVIAHDPYA-PADRARAIGVDL-VSFDEAIATADFISLHMPLT--P---------ATSKVLNDETFGKMKK 279 (600)
Q Consensus 213 A~~l~~~g~~V~~~d~~~-~~~~a~~~g~~~-~~l~ell~~aDvV~l~~Pl~--~---------~t~~li~~~~l~~mk~ 279 (600)
+..+..+|++|....|.. ........++.. .++++++++||+|..-.=.. . .....++.+.++.+|
T Consensus 189 ~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~~d~~eav~~aDvvy~~~w~s~g~~~~~~~~~r~~~y~vt~e~l~~a~- 267 (324)
T 1js1_X 189 AEWMNATDYEFVITHPEGYELDPKFVGNARVEYDQMKAFEGADFIYAKNWAAYTGDNYGQILSTDRNWTVGDRQMAVTN- 267 (324)
T ss_dssp HHHHHTSSSEEEEECCTTCCCCHHHHTTCEEESCHHHHHTTCSEEEECCCCCCSTTCTTCCCCCCTTSSBCHHHHTTSS-
T ss_pred HHHHHHCCCEEEEeCCcccCCChhhccceEEECCHHHHhCCCCEEEecCcccCCCccccchHHHhcCcccCHHHHHhcC-
Confidence 999999999999998854 221111134543 48999999999998833211 0 012344556666565
Q ss_pred ceEEEEcc
Q 007512 280 GVRIINVA 287 (600)
Q Consensus 280 gailvNva 287 (600)
+++|.-|.
T Consensus 268 ~ai~MHcL 275 (324)
T 1js1_X 268 NAYFMHCL 275 (324)
T ss_dssp SCEEECCS
T ss_pred CcEEECCC
Confidence 66666664
|
| >4gqa_A NAD binding oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: MSE; 2.42A {Klebsiella pneumoniae} | Back alignment and structure |
|---|
Probab=95.80 E-value=0.007 Score=64.40 Aligned_cols=63 Identities=19% Similarity=0.333 Sum_probs=48.2
Q ss_pred EEEEEecChhHHHHHHHhhcC---------CCEEEE-ECCCCC--hhHHHHcCCc--ccCHHHHhc--cCCEEEEecCC
Q 007512 199 TLAVLGFGKVGSEVARRAKGL---------GMHVIA-HDPYAP--ADRARAIGVD--LVSFDEAIA--TADFISLHMPL 261 (600)
Q Consensus 199 tiGIIGlG~IG~~vA~~l~~~---------g~~V~~-~d~~~~--~~~a~~~g~~--~~~l~ell~--~aDvV~l~~Pl 261 (600)
+|||||+|.||+.-++.++.. +.+|.+ +|++.. ...+.+.|+. +.+++++++ +.|+|++|+|.
T Consensus 28 rvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~elvav~d~~~~~a~~~a~~~~~~~~y~d~~~ll~~~~vD~V~I~tp~ 106 (412)
T 4gqa_A 28 NIGLIGSGFMGQAHADAYRRAAMFYPDLPKRPHLYALADQDQAMAERHAAKLGAEKAYGDWRELVNDPQVDVVDITSPN 106 (412)
T ss_dssp EEEEECCSHHHHHHHHHHHHHHHHCTTSSSEEEEEEEECSSHHHHHHHHHHHTCSEEESSHHHHHHCTTCCEEEECSCG
T ss_pred eEEEEcCcHHHHHHHHHHHhccccccccCCCeEEEEEEcCCHHHHHHHHHHcCCCeEECCHHHHhcCCCCCEEEECCCc
Confidence 899999999999988888643 457765 688762 2345667774 458999996 58999999993
|
| >2vt3_A REX, redox-sensing transcriptional repressor REX; transcriptional regulation, redox poise; HET: ATP; 2.0A {Bacillus subtilis} PDB: 2vt2_A* | Back alignment and structure |
|---|
Probab=95.78 E-value=0.0047 Score=60.42 Aligned_cols=64 Identities=16% Similarity=0.267 Sum_probs=41.6
Q ss_pred CEEEEEecChhHHHHHHH--hhcCCCEEEE-ECCCCChhHHHHcCCc---ccCHHHHhccCCEEEEecCC
Q 007512 198 KTLAVLGFGKVGSEVARR--AKGLGMHVIA-HDPYAPADRARAIGVD---LVSFDEAIATADFISLHMPL 261 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~--l~~~g~~V~~-~d~~~~~~~a~~~g~~---~~~l~ell~~aDvV~l~~Pl 261 (600)
++++|||.|.+|+.+++. ....|+++.+ +|.++......-.|+. ..++++++++.|++++|+|.
T Consensus 86 ~rV~IIGAG~~G~~La~~~~~~~~g~~iVg~~D~dp~k~g~~i~gv~V~~~~dl~eli~~~D~ViIAvPs 155 (215)
T 2vt3_A 86 TDVILIGVGNLGTAFLHYNFTKNNNTKISMAFDINESKIGTEVGGVPVYNLDDLEQHVKDESVAILTVPA 155 (215)
T ss_dssp -CEEEECCSHHHHHHHHCC------CCEEEEEESCTTTTTCEETTEEEEEGGGHHHHCSSCCEEEECSCH
T ss_pred CEEEEEccCHHHHHHHHHHhcccCCcEEEEEEeCCHHHHHhHhcCCeeechhhHHHHHHhCCEEEEecCc
Confidence 469999999999999994 3355888876 5665532111112322 34688888777999999994
|
| >3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A* | Back alignment and structure |
|---|
Probab=95.77 E-value=0.029 Score=60.45 Aligned_cols=87 Identities=21% Similarity=0.277 Sum_probs=65.1
Q ss_pred eccCCEEEEEecC----------hhHHHHHHHhhcC-CCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEecCCC
Q 007512 194 SLVGKTLAVLGFG----------KVGSEVARRAKGL-GMHVIAHDPYAPADRARAIGVDLVSFDEAIATADFISLHMPLT 262 (600)
Q Consensus 194 ~l~gktiGIIGlG----------~IG~~vA~~l~~~-g~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Pl~ 262 (600)
.+.|++|+|+|+- .-...+++.|... |.+|.+|||....+ ....++++.++.||+|+++++-.
T Consensus 312 ~~~~~~v~vlGlafK~~tdD~ReSpa~~i~~~L~~~~g~~V~~~DP~~~~~------~~~~~~~~~~~~ad~vvi~t~~~ 385 (431)
T 3ojo_A 312 ALSGNKVTVFGLTYKGDVDDIRESPAFDIYELLNQEPDIEVCAYDPHVELD------FVEHDMSHAVKDASLVLILSDHS 385 (431)
T ss_dssp HSSCCEEEEECCCSSTTSCCCTTCHHHHHHHHHHHSTTCEEEEECSSCCCT------TBCSTTHHHHTTCSEEEECSCCG
T ss_pred hcCCCEEEEEeeeeCCCCcchhcChHHHHHHHHHhhcCCEEEEECCCcccc------cccCCHHHHHhCCCEEEEecCCH
Confidence 4789999999985 2367899999988 99999999998542 23457889999999999999833
Q ss_pred ccccccccHhHhccCCCceEEEEccCCc
Q 007512 263 PATSKVLNDETFGKMKKGVRIINVARGG 290 (600)
Q Consensus 263 ~~t~~li~~~~l~~mk~gailvNvarg~ 290 (600)
+-+. ++-+.+..|+ +.+|+|+ |+-
T Consensus 386 -~f~~-~d~~~~~~~~-~~~i~D~-r~~ 409 (431)
T 3ojo_A 386 -EFKN-LSDSHFDKMK-HKVIFDT-KNV 409 (431)
T ss_dssp -GGTS-CCGGGGTTCS-SCEEEES-SCC
T ss_pred -HHhc-cCHHHHHhCC-CCEEEEC-CCC
Confidence 3333 3444456676 6789995 443
|
| >2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A* | Back alignment and structure |
|---|
Probab=95.75 E-value=0.015 Score=59.34 Aligned_cols=102 Identities=20% Similarity=0.303 Sum_probs=64.2
Q ss_pred CCEEEEEec-ChhHHHHHHHhhcCCCEEE-EECCCCChhHHHHcCCcc-cCHHHHhc--cCCEEEEecCCCccccccccH
Q 007512 197 GKTLAVLGF-GKVGSEVARRAKGLGMHVI-AHDPYAPADRARAIGVDL-VSFDEAIA--TADFISLHMPLTPATSKVLND 271 (600)
Q Consensus 197 gktiGIIGl-G~IG~~vA~~l~~~g~~V~-~~d~~~~~~~a~~~g~~~-~~l~ell~--~aDvV~l~~Pl~~~t~~li~~ 271 (600)
..+|+|+|+ |++|+.+++.++..|++++ .+||..... ...|+.. .+++++.. ..|++++++|. +.....+.+
T Consensus 7 ~~rVaViG~sG~~G~~~~~~l~~~g~~~V~~V~p~~~g~--~~~G~~vy~sl~el~~~~~~D~viI~tP~-~~~~~~~~e 83 (288)
T 2nu8_A 7 NTKVICQGFTGSQGTFHSEQAIAYGTKMVGGVTPGKGGT--THLGLPVFNTVREAVAATGATASVIYVPA-PFCKDSILE 83 (288)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECTTCTTC--EETTEEEESSHHHHHHHHCCCEEEECCCG-GGHHHHHHH
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCCCcccc--eeCCeeccCCHHHHhhcCCCCEEEEecCH-HHHHHHHHH
Confidence 458999999 9999999999988888855 578753211 1346654 47999988 89999999993 333333322
Q ss_pred hHhccCCCceEEEEccCCcc-ccHHHHHHhHhcC
Q 007512 272 ETFGKMKKGVRIINVARGGV-IDEEALVRALDSG 304 (600)
Q Consensus 272 ~~l~~mk~gailvNvarg~i-vde~aL~~aL~~g 304 (600)
.++ ..... +|..+.|-- -+.+.+.++.++.
T Consensus 84 -a~~-~Gi~~-iVi~t~G~~~~~~~~l~~~A~~~ 114 (288)
T 2nu8_A 84 -AID-AGIKL-IITITEGIPTLDMLTVKVKLDEA 114 (288)
T ss_dssp -HHH-TTCSE-EEECCCCCCHHHHHHHHHHHHHH
T ss_pred -HHH-CCCCE-EEEECCCCCHHHHHHHHHHHHHc
Confidence 222 22222 333444422 2344677666653
|
| >3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=95.74 E-value=0.0087 Score=64.74 Aligned_cols=110 Identities=18% Similarity=0.170 Sum_probs=69.5
Q ss_pred eccCCEEEEEecChhHHHHHHHhhcCCCEEEEECCCCC-----hhHHHHcCCccc---CHHHHhcc-CCEEEEecCCCcc
Q 007512 194 SLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAP-----ADRARAIGVDLV---SFDEAIAT-ADFISLHMPLTPA 264 (600)
Q Consensus 194 ~l~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~-----~~~a~~~g~~~~---~l~ell~~-aDvV~l~~Pl~~~ 264 (600)
++.||+|.|||+|..|.++|+.|+..|++|.++|.... .+...+.|++.. ..++++.+ +|+|++.--..+.
T Consensus 6 ~~~~k~v~viG~G~sG~s~A~~l~~~G~~V~~~D~~~~~~~~~~~~L~~~gi~~~~g~~~~~~~~~~~d~vv~spgi~~~ 85 (451)
T 3lk7_A 6 TFENKKVLVLGLARSGEAAARLLAKLGAIVTVNDGKPFDENPTAQSLLEEGIKVVCGSHPLELLDEDFCYMIKNPGIPYN 85 (451)
T ss_dssp TTTTCEEEEECCTTTHHHHHHHHHHTTCEEEEEESSCGGGCHHHHHHHHTTCEEEESCCCGGGGGSCEEEEEECTTSCTT
T ss_pred hcCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEeCCcccCChHHHHHHhCCCEEEECCChHHhhcCCCCEEEECCcCCCC
Confidence 56799999999999999999999999999999998541 123445687543 23456676 9999886332221
Q ss_pred c----------cccccHh-HhccCCCceEEEEcc-CCccccHHHHHHhHhc
Q 007512 265 T----------SKVLNDE-TFGKMKKGVRIINVA-RGGVIDEEALVRALDS 303 (600)
Q Consensus 265 t----------~~li~~~-~l~~mk~gailvNva-rg~ivde~aL~~aL~~ 303 (600)
. ..++.+- .+..+.+..+|-=+| .|+.-...-+...|+.
T Consensus 86 ~p~~~~a~~~gi~v~~~~e~~~~~~~~~~IaVTGTnGKTTTt~ml~~iL~~ 136 (451)
T 3lk7_A 86 NPMVKKALEKQIPVLTEVELAYLVSESQLIGITGSNGKTTTTTMIAEVLNA 136 (451)
T ss_dssp SHHHHHHHHTTCCEECHHHHHHHHCCSEEEEEECSSCHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHCCCcEEeHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHHh
Confidence 1 1133332 333333333333333 5777555555555654
|
| >3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1 | Back alignment and structure |
|---|
Probab=95.72 E-value=0.0085 Score=62.35 Aligned_cols=91 Identities=12% Similarity=0.048 Sum_probs=59.3
Q ss_pred cCCEEEEEecChhHHHHHHHhhcCCC--EEEEECCCCChhHHH----HcC--------Cc-ccCHHHHhccCCEEEEecC
Q 007512 196 VGKTLAVLGFGKVGSEVARRAKGLGM--HVIAHDPYAPADRAR----AIG--------VD-LVSFDEAIATADFISLHMP 260 (600)
Q Consensus 196 ~gktiGIIGlG~IG~~vA~~l~~~g~--~V~~~d~~~~~~~a~----~~g--------~~-~~~l~ell~~aDvV~l~~P 260 (600)
..++|+|||.|.||..+|..+...|+ +|..+|......... +.+ +. ..+.++ +++||+|+++..
T Consensus 20 ~~~kV~ViGaG~vG~~~a~~la~~g~~~ev~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~t~d~~~-~~daDiVIitaG 98 (330)
T 3ldh_A 20 SYNKITVVGCDAVGMADAISVLMKDLADEVALVDVMEDKLKGEMMDLEHGSLFLHTAKIVSGKDYSV-SAGSKLVVITAG 98 (330)
T ss_dssp CCCEEEEESTTHHHHHHHHHHHHHCCCSEEEEECSCHHHHHHHHHHHHHHGGGSCCSEEEEESSSCS-CSSCSEEEECCS
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhhhhcccCCeEEEcCCHHH-hCCCCEEEEeCC
Confidence 56899999999999999999986666 999999864211111 001 11 125555 999999999876
Q ss_pred CCc---ccc-ccc--cH-------hHhccCCCceEEEEcc
Q 007512 261 LTP---ATS-KVL--ND-------ETFGKMKKGVRIINVA 287 (600)
Q Consensus 261 l~~---~t~-~li--~~-------~~l~~mk~gailvNva 287 (600)
... +++ .++ |. +.+.+..|++++++++
T Consensus 99 ~p~kpG~tR~dll~~N~~I~k~i~~~I~k~~P~a~ilvvt 138 (330)
T 3ldh_A 99 ARQQEGESRLNLVQRNVNIFKFIIPNIVKHSPDCLKELHP 138 (330)
T ss_dssp CCCCSSCCTTGGGHHHHHHHHHHHHHHHHHCTTCEEEECS
T ss_pred CCCCCCCCHHHHHHhhHHHHHHHHHHHHhhCCCceEEeCC
Confidence 322 122 112 11 1233457899999986
|
| >2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A* | Back alignment and structure |
|---|
Probab=95.70 E-value=0.0071 Score=63.31 Aligned_cols=91 Identities=11% Similarity=0.050 Sum_probs=64.7
Q ss_pred eccCCEEEEEecChhHHHHHHHhhcCCCEEEEECCCC---C-hhHHHHcCCcccC---HHHHh----ccCCEEEEecCCC
Q 007512 194 SLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYA---P-ADRARAIGVDLVS---FDEAI----ATADFISLHMPLT 262 (600)
Q Consensus 194 ~l~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~---~-~~~a~~~g~~~~~---l~ell----~~aDvV~l~~Pl~ 262 (600)
.+.|++|.|+|.|.||..+++.++.+|.+|++.++.. . .+.+++.|+..++ +.+.+ ...|+|+-++...
T Consensus 178 ~~~g~~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~~~ga~~v~~~~~~~~~~~~~~~~d~vid~~g~~ 257 (366)
T 2cdc_A 178 TLNCRKVLVVGTGPIGVLFTLLFRTYGLEVWMANRREPTEVEQTVIEETKTNYYNSSNGYDKLKDSVGKFDVIIDATGAD 257 (366)
T ss_dssp SSTTCEEEEESCHHHHHHHHHHHHHHTCEEEEEESSCCCHHHHHHHHHHTCEEEECTTCSHHHHHHHCCEEEEEECCCCC
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCccchHHHHHHHHhCCceechHHHHHHHHHhCCCCCEEEECCCCh
Confidence 5679999999999999999999999999999998765 2 3455667765331 11111 3478888888743
Q ss_pred ccccccccHhHhccCCCceEEEEccC
Q 007512 263 PATSKVLNDETFGKMKKGVRIINVAR 288 (600)
Q Consensus 263 ~~t~~li~~~~l~~mk~gailvNvar 288 (600)
... + ...+..|+++..+++++.
T Consensus 258 ~~~---~-~~~~~~l~~~G~iv~~g~ 279 (366)
T 2cdc_A 258 VNI---L-GNVIPLLGRNGVLGLFGF 279 (366)
T ss_dssp THH---H-HHHGGGEEEEEEEEECSC
T ss_pred HHH---H-HHHHHHHhcCCEEEEEec
Confidence 211 0 445667888888888864
|
| >2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A | Back alignment and structure |
|---|
Probab=95.69 E-value=0.0095 Score=61.23 Aligned_cols=63 Identities=14% Similarity=0.240 Sum_probs=44.7
Q ss_pred CCEEEEEecChhHHHHHHHhhcCCC--EEEEECCCCC-hhHHHH---c---CCcc-cCHHHHhccCCEEEEecC
Q 007512 197 GKTLAVLGFGKVGSEVARRAKGLGM--HVIAHDPYAP-ADRARA---I---GVDL-VSFDEAIATADFISLHMP 260 (600)
Q Consensus 197 gktiGIIGlG~IG~~vA~~l~~~g~--~V~~~d~~~~-~~~a~~---~---g~~~-~~l~ell~~aDvV~l~~P 260 (600)
.++|+|||.|.+|..+|..+...|+ +|..||.... ...+.+ . .+.. .++ +.+++||+|+++..
T Consensus 14 ~~kV~ViGaG~vG~~~a~~l~~~g~~~ev~L~Di~~~~~g~a~dl~~~~~~~i~~t~d~-~~l~~aD~Vi~aag 86 (303)
T 2i6t_A 14 VNKITVVGGGELGIACTLAISAKGIADRLVLLDLSEGTKGATMDLEIFNLPNVEISKDL-SASAHSKVVIFTVN 86 (303)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECCC-----CHHHHHHHTCTTEEEESCG-GGGTTCSEEEECCC
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCcchHHHHHHHhhhcCCCeEEeCCH-HHHCCCCEEEEcCC
Confidence 3799999999999999999876666 9999998752 111111 1 1222 366 67899999999974
|
| >1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A* | Back alignment and structure |
|---|
Probab=95.67 E-value=0.014 Score=59.63 Aligned_cols=94 Identities=18% Similarity=0.090 Sum_probs=62.6
Q ss_pred CEEEEEecChhHHHHHHHhhcCCC--EEEEECCCCChhH--H----HH---c--CC--cc-cCHHHHhccCCEEEEecCC
Q 007512 198 KTLAVLGFGKVGSEVARRAKGLGM--HVIAHDPYAPADR--A----RA---I--GV--DL-VSFDEAIATADFISLHMPL 261 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~g~--~V~~~d~~~~~~~--a----~~---~--g~--~~-~~l~ell~~aDvV~l~~Pl 261 (600)
++|+|||.|.+|.++|..|...|. +|..||....... + .. . .. .. .+ .+.+++||+|+++.+.
T Consensus 1 MkI~ViGaG~vG~~la~~l~~~~~~~~v~L~D~~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d-~~a~~~aDiVViaag~ 79 (294)
T 1oju_A 1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGAD-YSLLKGSEIIVVTAGL 79 (294)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEESC-GGGGTTCSEEEECCCC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECChHHHHHHHHHHHhhhhhcCCCCEEEEeCC-HHHhCCCCEEEECCCC
Confidence 479999999999999999986666 9999998752211 1 10 1 11 11 25 7889999999999874
Q ss_pred Ccccccc-----c--cH-------hHhccCCCceEEEEccCCccccHH
Q 007512 262 TPATSKV-----L--ND-------ETFGKMKKGVRIINVARGGVIDEE 295 (600)
Q Consensus 262 ~~~t~~l-----i--~~-------~~l~~mk~gailvNvarg~ivde~ 295 (600)
. ...++ + |. +.+.+..|++++++++ ..+|.-
T Consensus 80 ~-~kpG~~R~dl~~~N~~i~~~i~~~i~~~~p~a~iivvs--NPvd~~ 124 (294)
T 1oju_A 80 A-RKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVT--NPMDVM 124 (294)
T ss_dssp C-CCSSCCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECS--SSHHHH
T ss_pred C-CCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeC--CcchHH
Confidence 3 22222 1 11 1244467899999997 455643
|
| >3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1} | Back alignment and structure |
|---|
Probab=95.67 E-value=0.017 Score=63.07 Aligned_cols=98 Identities=24% Similarity=0.336 Sum_probs=70.0
Q ss_pred ceeccCCEEEEEecCh----------hHHHHHHHhhcCCCEEEEECCCCChhHHHHcCCcc-cCHHHHhccCCEEEEecC
Q 007512 192 GVSLVGKTLAVLGFGK----------VGSEVARRAKGLGMHVIAHDPYAPADRARAIGVDL-VSFDEAIATADFISLHMP 260 (600)
Q Consensus 192 g~~l~gktiGIIGlG~----------IG~~vA~~l~~~g~~V~~~d~~~~~~~a~~~g~~~-~~l~ell~~aDvV~l~~P 260 (600)
+..+.|++|+|+|+-- =...+++.|...|.+|.+|||+.... ..+.+ .++++.++.||+|+++++
T Consensus 348 ~~~~~~~~v~vlGlafK~~tdD~R~Sp~~~i~~~L~~~g~~V~~~DP~~~~~----~~~~~~~~~~~~~~~ad~vvi~t~ 423 (478)
T 3g79_A 348 GKKMDGSKVAMLGWAFIKDSDDARNTPSEPYRDLCLKAGASVMVHDPYVVNY----PGVEISDNLEEVVRNADAIVVLAG 423 (478)
T ss_dssp TCCSTTCEEEEECSSSSTTCSCCTTCTHHHHHHHHHHHTCEEEEECSSCCCB----TTBCEESCHHHHHTTCSEEEECSC
T ss_pred ccCCCCCEEEEEeeecCCCCcchhcCcHHHHHHHHHHCCCEEEEECCCcccc----cCcceecCHHHHHhcCCEEEEecC
Confidence 4578999999999852 35789999999999999999997521 11222 478999999999999988
Q ss_pred CCccccccccHh-HhccCC-CceEEEEccCCccccHHHH
Q 007512 261 LTPATSKVLNDE-TFGKMK-KGVRIINVARGGVIDEEAL 297 (600)
Q Consensus 261 l~~~t~~li~~~-~l~~mk-~gailvNvarg~ivde~aL 297 (600)
-++-+. ++-+ ....|+ +..+|+|+ |+- .|.+.+
T Consensus 424 -~~~f~~-~d~~~~~~~~~~~~~~i~D~-rn~-~~~~~~ 458 (478)
T 3g79_A 424 -HSAYSS-LKADWAKKVSAKANPVIIDG-RNV-IEPDEF 458 (478)
T ss_dssp -CHHHHS-CCHHHHHHHHCCSSCEEEES-SSC-SCHHHH
T ss_pred -CHHHHh-hhHHHHHHHhccCCCEEEEC-CCC-CCHHHH
Confidence 333333 3433 334577 47899995 544 465554
|
| >3fhl_A Putative oxidoreductase; NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 1.93A {Bacteroides fragilis nctc 9343} | Back alignment and structure |
|---|
Probab=95.67 E-value=0.0082 Score=62.82 Aligned_cols=62 Identities=16% Similarity=0.170 Sum_probs=47.4
Q ss_pred CEEEEEecChhHHH-HHHHhhcC-CCEEEE-ECCCCChhHHHHc-CCc-ccCHHHHhcc--CCEEEEecC
Q 007512 198 KTLAVLGFGKVGSE-VARRAKGL-GMHVIA-HDPYAPADRARAI-GVD-LVSFDEAIAT--ADFISLHMP 260 (600)
Q Consensus 198 ktiGIIGlG~IG~~-vA~~l~~~-g~~V~~-~d~~~~~~~a~~~-g~~-~~~l~ell~~--aDvV~l~~P 260 (600)
.+|||||+|.||+. .+..++.. ++++.+ +|++... .+.+. ++. +.++++++++ .|+|++|+|
T Consensus 6 ~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~-~~~~~~~~~~~~~~~~ll~~~~vD~V~i~tp 74 (362)
T 3fhl_A 6 IKTGLAAFGMSGQVFHAPFISTNPHFELYKIVERSKEL-SKERYPQASIVRSFKELTEDPEIDLIVVNTP 74 (362)
T ss_dssp EEEEESCCSHHHHHTTHHHHHHCTTEEEEEEECSSCCG-GGTTCTTSEEESCSHHHHTCTTCCEEEECSC
T ss_pred eEEEEECCCHHHHHHHHHHHhhCCCeEEEEEEcCCHHH-HHHhCCCCceECCHHHHhcCCCCCEEEEeCC
Confidence 48999999999997 77777766 788864 7887643 23334 443 3589999987 999999999
|
| >3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei} | Back alignment and structure |
|---|
Probab=95.66 E-value=0.013 Score=59.95 Aligned_cols=53 Identities=9% Similarity=0.026 Sum_probs=45.5
Q ss_pred CccEEEEEecCCCCChhhHHhhhhcCCccccceEeeeecCCCcEEEEEEeCCC
Q 007512 525 EGSIILCRQVDQPGMIGTVGSILGSENVNVSFMSVGRVAPRKHAVMAIGVDEQ 577 (600)
Q Consensus 525 ~~~~Liv~~~D~pG~Ia~V~~iL~~~~INIa~m~v~R~~~g~~al~~i~~D~~ 577 (600)
..+.|.+..+|+||+|+.|++.|+++|+||..++..-....+.-+|+++++.+
T Consensus 9 ~~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~ 61 (292)
T 3lou_A 9 HQFVLTLSCPSAAGQVAAVVGLLDRHRCYVDELTVFDDDLSARFFVRCVFHAT 61 (292)
T ss_dssp CEEEEEEEEESCSCHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEEEEC
T ss_pred CcEEEEEEcCCCCCHHHHHHHHHHHCCCCEEeeEEEecCCCCceEEEEEEEcc
Confidence 34677888999999999999999999999999998865667778888887754
|
| >3f4l_A Putative oxidoreductase YHHX; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=95.65 E-value=0.0095 Score=61.86 Aligned_cols=64 Identities=17% Similarity=0.201 Sum_probs=45.6
Q ss_pred CEEEEEecChhHHH-HHH-Hhhc-CCCEEE-EECCCCCh-hHHHH-cCCc-ccCHHHHhcc--CCEEEEecCC
Q 007512 198 KTLAVLGFGKVGSE-VAR-RAKG-LGMHVI-AHDPYAPA-DRARA-IGVD-LVSFDEAIAT--ADFISLHMPL 261 (600)
Q Consensus 198 ktiGIIGlG~IG~~-vA~-~l~~-~g~~V~-~~d~~~~~-~~a~~-~g~~-~~~l~ell~~--aDvV~l~~Pl 261 (600)
.+|||||+|.||+. .+. .++. -++++. ++|++... +.+.+ .++. +.++++++.+ .|+|++|+|.
T Consensus 3 ~rvgiiG~G~~g~~~~~~~~~~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~ 75 (345)
T 3f4l_A 3 INCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPEEQAPIYSHIHFTSDLDEVLNDPDVKLVVVCTHA 75 (345)
T ss_dssp EEEEEECCSHHHHHHTHHHHTTCTTTEEEEEEECSSCCGGGGSGGGTTCEEESCTHHHHTCTTEEEEEECSCG
T ss_pred eEEEEEecCHHHHHHHHHHHHhcCCCeEEEEEEcCCHhHHHHHHhcCCCceECCHHHHhcCCCCCEEEEcCCh
Confidence 47999999999996 455 4354 378887 58887643 22222 2444 3589999986 8999999993
|
| >4fcc_A Glutamate dehydrogenase; protein complex, rossmann fold, metabolic role, NAD, NADP, oxidoreductase; 2.00A {Escherichia coli O157} PDB: 4fhn_X 2yfg_A 3sbo_A 2yfg_E | Back alignment and structure |
|---|
Probab=95.64 E-value=0.052 Score=58.47 Aligned_cols=95 Identities=17% Similarity=0.224 Sum_probs=61.7
Q ss_pred ceeccCCEEEEEecChhHHHHHHHhhcCCCEEEE--------ECCCC-ChhH------------------HHHcCCcccC
Q 007512 192 GVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIA--------HDPYA-PADR------------------ARAIGVDLVS 244 (600)
Q Consensus 192 g~~l~gktiGIIGlG~IG~~vA~~l~~~g~~V~~--------~d~~~-~~~~------------------a~~~g~~~~~ 244 (600)
+..+.|+|+.|=|+|++|..+|+.|...|.+|++ |||.- +.+. +.+.|..+++
T Consensus 230 ~~~l~Gk~vaVQG~GnVG~~aa~~L~e~GakvVavsD~~G~i~d~~Gid~e~l~~l~e~k~~~~g~v~~~~~~~g~~~~~ 309 (450)
T 4fcc_A 230 GMGFEGMRVSVSGSGNVAQYAIEKAMEFGARVITASDSSGTVVDESGFTKEKLARLIEIKSSRDGRVADYAKEFGLVYLE 309 (450)
T ss_dssp TCCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEEETTEEEECTTCCCHHHHHHHHHHHTSTTCCHHHHHHHHTCEEEE
T ss_pred CCCcCCCEEEEeCCChHHHHHHHHHHhcCCeEEEEecCCceEEeCCCCCHHHHHHHHHHhcccCCccccccccCCcEEec
Confidence 4578999999999999999999999999999987 45543 2221 1122333332
Q ss_pred HHHHh-ccCCEEEEecCCCccccccccHhHhccCCCc--eEEEEccCCcc
Q 007512 245 FDEAI-ATADFISLHMPLTPATSKVLNDETFGKMKKG--VRIINVARGGV 291 (600)
Q Consensus 245 l~ell-~~aDvV~l~~Pl~~~t~~li~~~~l~~mk~g--ailvNvarg~i 291 (600)
-++++ -.||+.+=|.- .+.|+.+....++.+ .++++-+-+.+
T Consensus 310 ~~~i~~~~~DI~iPcAl-----~~~I~~~~a~~L~a~g~k~IaEgAN~p~ 354 (450)
T 4fcc_A 310 GQQPWSVPVDIALPCAT-----QNELDVDAAHQLIANGVKAVAEGANMPT 354 (450)
T ss_dssp TCCGGGSCCSEEEECSC-----TTCBCHHHHHHHHHTTCCEEECCSSSCB
T ss_pred CcccccCCccEEeeccc-----cccccHHHHHHHHhcCceEEecCCCCCC
Confidence 23332 35887776653 445777766666532 35666666665
|
| >3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A* | Back alignment and structure |
|---|
Probab=95.64 E-value=0.016 Score=59.89 Aligned_cols=94 Identities=16% Similarity=0.090 Sum_probs=60.1
Q ss_pred CCEEEEEecChhHHHHHHHhhcCC--CEEEEECCCCChhH--HHH--c-------CCcc-cCHHHHhccCCEEEEecCCC
Q 007512 197 GKTLAVLGFGKVGSEVARRAKGLG--MHVIAHDPYAPADR--ARA--I-------GVDL-VSFDEAIATADFISLHMPLT 262 (600)
Q Consensus 197 gktiGIIGlG~IG~~vA~~l~~~g--~~V~~~d~~~~~~~--a~~--~-------g~~~-~~l~ell~~aDvV~l~~Pl~ 262 (600)
..+|+|||.|.+|.++|..+...| -+|..||....... +.. . .+.. .+..+.++.||+|+++++..
T Consensus 6 ~~KI~IIGaG~vG~~la~~l~~~~~~~ei~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~~~~~a~~~aDvVvi~ag~~ 85 (317)
T 3d0o_A 6 GNKVVLIGNGAVGSSYAFSLVNQSIVDELVIIDLDTEKVRGDVMDLKHATPYSPTTVRVKAGEYSDCHDADLVVICAGAA 85 (317)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCSCSEEEEECSCHHHHHHHHHHHHHHGGGSSSCCEEEECCGGGGTTCSEEEECCCCC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHhhhhhhhHHhhhhhcCCCeEEEeCCHHHhCCCCEEEECCCCC
Confidence 469999999999999999987555 48999997642111 111 1 1111 14467799999999999853
Q ss_pred ccccccc-------cH-------hHhccCCCceEEEEccCCcccc
Q 007512 263 PATSKVL-------ND-------ETFGKMKKGVRIINVARGGVID 293 (600)
Q Consensus 263 ~~t~~li-------~~-------~~l~~mk~gailvNvarg~ivd 293 (600)
. ..+.- |. +.+....|++++++++ ..+|
T Consensus 86 ~-~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~t--NPv~ 127 (317)
T 3d0o_A 86 Q-KPGETRLDLVSKNLKIFKSIVGEVMASKFDGIFLVAT--NPVD 127 (317)
T ss_dssp C-CTTCCHHHHHHHHHHHHHHHHHHHHHTTCCSEEEECS--SSHH
T ss_pred C-CCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec--CcHH
Confidence 2 22210 11 1233347899999975 4444
|
| >4ekn_B Aspartate carbamoyltransferase; atcase, aspartate transcarbamoylase, pyrimidine biosynthesis thermostability, substrate channeling; 2.50A {Methanocaldococcus jannaschii} PDB: 3e2p_A 2rgw_A | Back alignment and structure |
|---|
Probab=95.62 E-value=0.092 Score=53.92 Aligned_cols=98 Identities=16% Similarity=0.245 Sum_probs=68.4
Q ss_pred HHhCCceeecCC-CCChHHHHHHHHHHHHHHHhchHHHHHHHHcCccccccccceeccCCEEEEEec---ChhHHHHHHH
Q 007512 140 ATEFGCLVVNAP-TANTVAAAEHGIALLAAMARNVAQADASVKAGKWQRNKYVGVSLVGKTLAVLGF---GKVGSEVARR 215 (600)
Q Consensus 140 a~~~GI~V~n~p-~~~~~~vAE~~l~lll~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktiGIIGl---G~IG~~vA~~ 215 (600)
|...+|+|+|+- |...-++ .+++=++.+.++ .| .+.|.+|++||= |++..+.+..
T Consensus 114 A~~~~vPVINag~g~~~HPt--Q~LaDl~Ti~e~------------------~g-~l~glkva~vGD~~~~rva~Sl~~~ 172 (306)
T 4ekn_B 114 SEYSQVPIINAGDGSNQHPT--QTLLDLYTIMRE------------------IG-RIDGIKIAFVGDLKYGRTVHSLVYA 172 (306)
T ss_dssp HHHCSSCEEESCSSSSCCHH--HHHHHHHHHHHH------------------HS-CSTTCEEEEESCTTTCHHHHHHHHH
T ss_pred HHhCCCCEEeCCCCCCcCcH--HHHHHHHHHHHH------------------hC-CcCCCEEEEEcCCCCCcHHHHHHHH
Confidence 445678999985 4443333 333333333331 12 478999999998 4899999999
Q ss_pred hhcC-CCEEEEECCCC---Ch---hHHHHcCCcc---cCHHHHhccCCEEEEe
Q 007512 216 AKGL-GMHVIAHDPYA---PA---DRARAIGVDL---VSFDEAIATADFISLH 258 (600)
Q Consensus 216 l~~~-g~~V~~~d~~~---~~---~~a~~~g~~~---~~l~ell~~aDvV~l~ 258 (600)
+..+ |++|....|.. +. +.+.+.|... .++++.+++||+|..-
T Consensus 173 ~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~d~~eav~~aDvvy~~ 225 (306)
T 4ekn_B 173 LSLFENVEMYFVSPKELRLPKDIIEDLKAKNIKFYEKESLDDLDDDIDVLYVT 225 (306)
T ss_dssp HHTSSSCEEEEECCGGGCCCHHHHHHHHHTTCCEEEESCGGGCCTTCSEEEEC
T ss_pred HHhcCCCEEEEECCcccccCHHHHHHHHHcCCEEEEEcCHHHHhcCCCEEEeC
Confidence 9999 99999988753 22 2345566653 4899999999999874
|
| >3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A* | Back alignment and structure |
|---|
Probab=95.61 E-value=0.025 Score=58.60 Aligned_cols=92 Identities=17% Similarity=0.239 Sum_probs=59.3
Q ss_pred ccCCEEEEEecChhHHHHHHHhhcCCC-EEEEECCCCChhH--H----HH-----cCCc--c-cCHHHHhccCCEEEEec
Q 007512 195 LVGKTLAVLGFGKVGSEVARRAKGLGM-HVIAHDPYAPADR--A----RA-----IGVD--L-VSFDEAIATADFISLHM 259 (600)
Q Consensus 195 l~gktiGIIGlG~IG~~vA~~l~~~g~-~V~~~d~~~~~~~--a----~~-----~g~~--~-~~l~ell~~aDvV~l~~ 259 (600)
...++|+|||.|.+|..+|..+...|+ +|..||....... + .. .... . .+. +.+++||+|+++.
T Consensus 5 m~~~kI~viGaG~vG~~~a~~l~~~~~~~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~t~d~-~a~~~aDiVIiaa 83 (324)
T 3gvi_A 5 MARNKIALIGSGMIGGTLAHLAGLKELGDVVLFDIAEGTPQGKGLDIAESSPVDGFDAKFTGANDY-AAIEGADVVIVTA 83 (324)
T ss_dssp -CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEEESSG-GGGTTCSEEEECC
T ss_pred CcCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCchhHHHHHHHHhchhhhcCCCCEEEEeCCH-HHHCCCCEEEEcc
Confidence 346799999999999999999987777 9999998764321 1 10 1222 1 244 7899999999998
Q ss_pred CCCcccccc-----c--cHh-------HhccCCCceEEEEccC
Q 007512 260 PLTPATSKV-----L--NDE-------TFGKMKKGVRIINVAR 288 (600)
Q Consensus 260 Pl~~~t~~l-----i--~~~-------~l~~mk~gailvNvar 288 (600)
+.. ...++ + |.. .+....|++++++++-
T Consensus 84 g~p-~k~G~~R~dl~~~N~~i~~~i~~~i~~~~p~a~iivvtN 125 (324)
T 3gvi_A 84 GVP-RKPGMSRDDLLGINLKVMEQVGAGIKKYAPEAFVICITN 125 (324)
T ss_dssp SCC-CC-----CHHHHHHHHHHHHHHHHHHHHCTTCEEEECCS
T ss_pred CcC-CCCCCCHHHHHHhhHHHHHHHHHHHHHHCCCeEEEecCC
Confidence 632 22222 1 111 1222357889888863
|
| >3o9z_A Lipopolysaccaride biosynthesis protein WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD AKG; 1.45A {Thermus thermophilus} PDB: 3oa0_A* | Back alignment and structure |
|---|
Probab=95.60 E-value=0.018 Score=59.14 Aligned_cols=63 Identities=17% Similarity=0.306 Sum_probs=47.4
Q ss_pred CEEEEEec-ChhHHHHHHHhhcCCCEEEE-ECCCCChhHH-HHc-CCc-ccCHHHHh----------ccCCEEEEecC
Q 007512 198 KTLAVLGF-GKVGSEVARRAKGLGMHVIA-HDPYAPADRA-RAI-GVD-LVSFDEAI----------ATADFISLHMP 260 (600)
Q Consensus 198 ktiGIIGl-G~IG~~vA~~l~~~g~~V~~-~d~~~~~~~a-~~~-g~~-~~~l~ell----------~~aDvV~l~~P 260 (600)
.++||||+ |.||+..++.++..+.++.+ +|++.....+ ... +.. +.++++++ ++.|+|++|+|
T Consensus 4 irvgiIG~gG~i~~~h~~~l~~~~~~lvav~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~l~~~~~~vD~V~I~tP 81 (312)
T 3o9z_A 4 TRFALTGLAGYIAPRHLKAIKEVGGVLVASLDPATNVGLVDSFFPEAEFFTEPEAFEAYLEDLRDRGEGVDYLSIASP 81 (312)
T ss_dssp CEEEEECTTSSSHHHHHHHHHHTTCEEEEEECSSCCCGGGGGTCTTCEEESCHHHHHHHHHHHHHTTCCCSEEEECSC
T ss_pred eEEEEECCChHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHHhhCCCCceeCCHHHHHHHhhhhcccCCCCcEEEECCC
Confidence 58999999 78999999999988888764 7887643222 222 233 34788887 67999999999
|
| >3sds_A Ornithine carbamoyltransferase, mitochondrial; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.80A {Coccidioides immitis} | Back alignment and structure |
|---|
Probab=95.57 E-value=0.1 Score=54.62 Aligned_cols=138 Identities=17% Similarity=0.155 Sum_probs=83.0
Q ss_pred HHHhCCceeecCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCccc---cccccceeccCCEEEEEecC-hhHHHHHH
Q 007512 139 AATEFGCLVVNAPTANTVAAAEHGIALLAAMARNVAQADASVKAGKWQ---RNKYVGVSLVGKTLAVLGFG-KVGSEVAR 214 (600)
Q Consensus 139 aa~~~GI~V~n~p~~~~~~vAE~~l~lll~~~R~i~~~~~~~~~g~W~---~~~~~g~~l~gktiGIIGlG-~IG~~vA~ 214 (600)
.|...+|+|+|+-+...-++ .+++=++.+.+++ |.+. .....+..|.|.+|++||=+ ++..+++.
T Consensus 138 lA~~s~vPVINag~d~~HPt--QaLaDl~TI~E~~---------G~~~~~~~~~~~~~~l~glkva~vGD~~nva~Sl~~ 206 (353)
T 3sds_A 138 LAKHSSVPVINALCDTFHPL--QAIADFLTIHESF---------ASQSATHGTHPSSLGLEGLKIAWVGDANNVLFDLAI 206 (353)
T ss_dssp HHHHCSSCEEEEECSSCCHH--HHHHHHHHHHHHT---------C--------CTTCCSCTTCEEEEESCCCHHHHHHHH
T ss_pred HHhhCCCCEEECCCCCCCcH--HHHHHHHHHHHHh---------CCCcccccccccccccCCCEEEEECCCchHHHHHHH
Confidence 34557899999854433332 3333344444422 2110 00112345899999999976 57888888
Q ss_pred HhhcCCCEEEEECCCC---Chh---HHHHc------CC--c-ccCHHHHhccCCEEEEec--CCCcc----------ccc
Q 007512 215 RAKGLGMHVIAHDPYA---PAD---RARAI------GV--D-LVSFDEAIATADFISLHM--PLTPA----------TSK 267 (600)
Q Consensus 215 ~l~~~g~~V~~~d~~~---~~~---~a~~~------g~--~-~~~l~ell~~aDvV~l~~--Pl~~~----------t~~ 267 (600)
.+..+|++|....|.. +.+ .+++. |. . ..++++.+++||+|..-+ +...+ ...
T Consensus 207 ~l~~lG~~v~~~~P~~~~~~~~i~~~~~~~a~~~~~g~~~~~~~d~~eav~~aDVvytd~w~smg~E~~~~~r~~~~~~y 286 (353)
T 3sds_A 207 AATKMGVNVAVATPRGYEIPSHIVELIQKAREGVQSPGNLTQTTVPEVAVKDADVIVTDTWISMGQETEKIKRLEAFKDF 286 (353)
T ss_dssp HHHHTTCEEEEECCTTCCCCHHHHHHHHHHHTTCSSCCCEEEESCHHHHTTTCSEEEECCC--------CHHHHHHTTTC
T ss_pred HHHHcCCEEEEECCcccCCCHHHHHHHHHhhhhccCCCeEEEECCHHHHhcCCCEEEeCCccCCchhhHHHHHHHHhhCc
Confidence 8889999999988753 222 12221 32 2 248999999999998743 22221 113
Q ss_pred cccHhHhcc--CCCceEEEEcc
Q 007512 268 VLNDETFGK--MKKGVRIINVA 287 (600)
Q Consensus 268 li~~~~l~~--mk~gailvNva 287 (600)
-++.+.++. +|++++|.-|.
T Consensus 287 ~vt~ell~~~~ak~~ai~MHcL 308 (353)
T 3sds_A 287 KVTSELAKRGGAKENWKFMHCL 308 (353)
T ss_dssp CBCHHHHHHHTCCTTCEEEECS
T ss_pred eecHHHHhhcccCCCcEEECCC
Confidence 467777776 77888887775
|
| >2ozp_A N-acetyl-gamma-glutamyl-phosphate reductase; amino acid biosynthesis, structural genomics, riken structur genomics/proteomics initiative; 2.01A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=95.56 E-value=0.015 Score=60.73 Aligned_cols=85 Identities=19% Similarity=0.223 Sum_probs=53.9
Q ss_pred CEEEEEe-cChhHHHHHHHhhcC-CCEEEEECCCCChh--HHH----H---cCCcccCHHHHhccCCEEEEecCCCcccc
Q 007512 198 KTLAVLG-FGKVGSEVARRAKGL-GMHVIAHDPYAPAD--RAR----A---IGVDLVSFDEAIATADFISLHMPLTPATS 266 (600)
Q Consensus 198 ktiGIIG-lG~IG~~vA~~l~~~-g~~V~~~d~~~~~~--~a~----~---~g~~~~~l~ell~~aDvV~l~~Pl~~~t~ 266 (600)
.+|||+| .|.||+.+.+.|... .+++.+.....+.. ... - ..+...++++ +..+|+|++|+|... +.
T Consensus 5 ~kV~IiGAtG~iG~~llr~L~~~p~~elv~v~s~~~~g~~~~~~~~~~~g~~~~~~~~~~~-~~~vDvV~~a~g~~~-s~ 82 (345)
T 2ozp_A 5 KTLSIVGASGYAGGEFLRLALSHPYLEVKQVTSRRFAGEPVHFVHPNLRGRTNLKFVPPEK-LEPADILVLALPHGV-FA 82 (345)
T ss_dssp EEEEEETTTSHHHHHHHHHHHTCTTEEEEEEBCSTTTTSBGGGTCGGGTTTCCCBCBCGGG-CCCCSEEEECCCTTH-HH
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCcEEEEEECchhhCchhHHhCchhcCcccccccchhH-hcCCCEEEEcCCcHH-HH
Confidence 5899999 899999999999866 46877653322111 110 0 1122234444 578999999999553 22
Q ss_pred ccccHhHhccCCCceEEEEccC
Q 007512 267 KVLNDETFGKMKKGVRIINVAR 288 (600)
Q Consensus 267 ~li~~~~l~~mk~gailvNvar 288 (600)
.+.. ..++.|+.+|+.+.
T Consensus 83 ~~a~----~~~~aG~~VId~Sa 100 (345)
T 2ozp_A 83 REFD----RYSALAPVLVDLSA 100 (345)
T ss_dssp HTHH----HHHTTCSEEEECSS
T ss_pred HHHH----HHHHCCCEEEEcCc
Confidence 2221 12467889999875
|
| >4h31_A Otcase, ornithine carbamoyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PE5; 1.70A {Vibrio vulnificus} PDB: 3upd_A* | Back alignment and structure |
|---|
Probab=95.56 E-value=0.13 Score=53.87 Aligned_cols=130 Identities=20% Similarity=0.242 Sum_probs=85.6
Q ss_pred HHHhCCceeecCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCccccccccceeccCCEEEEEecC--hhHHHHHHHh
Q 007512 139 AATEFGCLVVNAPTANTVAAAEHGIALLAAMARNVAQADASVKAGKWQRNKYVGVSLVGKTLAVLGFG--KVGSEVARRA 216 (600)
Q Consensus 139 aa~~~GI~V~n~p~~~~~~vAE~~l~lll~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktiGIIGlG--~IG~~vA~~l 216 (600)
.+...+|+|.|.-|...-++ .+++=++.+.+ .+.+..+.|.+|++||=| ++..+.+..+
T Consensus 142 la~~s~vPVING~g~~~HPt--QaL~Dl~Ti~e-----------------~~~~~~l~gl~ia~vGD~~~~va~S~~~~~ 202 (358)
T 4h31_A 142 LGAFAGVPVWNGLTDEFHPT--QILADFLTMLE-----------------HSQGKALADIQFAYLGDARNNVGNSLMVGA 202 (358)
T ss_dssp HHHHSSSCEEESCCSSCCHH--HHHHHHHHHHH-----------------TTTTCCGGGCEEEEESCTTSHHHHHHHHHH
T ss_pred hhhhccCceECCCCcCCCch--HHHHHHHHHHH-----------------HhcCCCcCceEEEecCCCCcccchHHHHHH
Confidence 44556789999666544443 23333443332 122457889999999954 7999999999
Q ss_pred hcCCCEEEEECCCC---Chh-------HHHHcCCcc---cCHHHHhccCCEEEEecCCC----cc---------cccccc
Q 007512 217 KGLGMHVIAHDPYA---PAD-------RARAIGVDL---VSFDEAIATADFISLHMPLT----PA---------TSKVLN 270 (600)
Q Consensus 217 ~~~g~~V~~~d~~~---~~~-------~a~~~g~~~---~~l~ell~~aDvV~l~~Pl~----~~---------t~~li~ 270 (600)
..+|++|..+.|.. +.+ .+.+.|... .++++.+++||+|..-.=.. ++ ...-++
T Consensus 203 ~~~g~~v~~~~P~~~~p~~~~~~~~~~~~~~~g~~v~~~~d~~eav~~aDvvyt~~w~s~~~~~~~~~~~~~~~~~y~v~ 282 (358)
T 4h31_A 203 AKMGMDIRLVGPQAYWPDEELVAACQAIAKQTGGKITLTENVAEGVQGCDFLYTDVWVSMGESPEAWDERVALMKPYQVN 282 (358)
T ss_dssp HHHTCEEEEESCGGGSCCHHHHHHHHHHHHHHTCEEEEESCHHHHHTTCSEEEECCSSCTTSCTTHHHHHHHHHGGGCBC
T ss_pred HhcCceEEEeCCcccCCCHHHHHHHHHHHHHcCCcceeccCHHHHhccCcEEEEEEEEEcccCchhHHHHHHHHhCcccC
Confidence 99999999998743 221 133445432 38999999999998532211 11 113367
Q ss_pred HhHhcc-CCCceEEEEcc
Q 007512 271 DETFGK-MKKGVRIINVA 287 (600)
Q Consensus 271 ~~~l~~-mk~gailvNva 287 (600)
.+.+++ .||+++|.-|.
T Consensus 283 ~~~l~~~ak~~~i~mH~L 300 (358)
T 4h31_A 283 MNVLKQTGNPNVKFMHCL 300 (358)
T ss_dssp HHHHHHTTCTTCEEEECS
T ss_pred HHHHHhcCCCCcEEECCC
Confidence 777765 47899999885
|
| >1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=95.54 E-value=0.015 Score=60.13 Aligned_cols=93 Identities=14% Similarity=0.114 Sum_probs=58.3
Q ss_pred CEEEEEecChhHHHHHHHhhcCCC--EEEEECCCCChhH--HHHc--C------Ccc-cCHHHHhccCCEEEEecCCCcc
Q 007512 198 KTLAVLGFGKVGSEVARRAKGLGM--HVIAHDPYAPADR--ARAI--G------VDL-VSFDEAIATADFISLHMPLTPA 264 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~g~--~V~~~d~~~~~~~--a~~~--g------~~~-~~l~ell~~aDvV~l~~Pl~~~ 264 (600)
.+|+|||.|.+|.+++..+...+. ++..||....... +.++ . +.. .+..+.++.||+|+++.+...
T Consensus 6 ~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~v~~~~~~a~~~aDvVii~ag~~~- 84 (318)
T 1ez4_A 6 QKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYSGEYSDCKDADLVVITAGAPQ- 84 (318)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEECCGGGGTTCSEEEECCCC---
T ss_pred CEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCeEEEECCHHHhCCCCEEEECCCCCC-
Confidence 689999999999999999985554 8999998642111 1111 1 111 144677999999999997532
Q ss_pred cccc-------ccH-------hHhccCCCceEEEEccCCcccc
Q 007512 265 TSKV-------LND-------ETFGKMKKGVRIINVARGGVID 293 (600)
Q Consensus 265 t~~l-------i~~-------~~l~~mk~gailvNvarg~ivd 293 (600)
..++ .|. +.+....|+++++++ +..+|
T Consensus 85 ~~g~~R~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~--tNPv~ 125 (318)
T 1ez4_A 85 KPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVA--ANPVD 125 (318)
T ss_dssp --------CHHHHHHHHHHHHHHHHHTTCCSEEEEC--SSSHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEe--CCcHH
Confidence 2221 011 123334789999997 44445
|
| >3dty_A Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetramer, PSI-2, 11131, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=95.53 E-value=0.011 Score=62.67 Aligned_cols=64 Identities=19% Similarity=0.195 Sum_probs=50.0
Q ss_pred CCEEEEEecCh---hHHHHHHHhhcC-CCEEEE--ECCCCC--hhHHHHcCCc----ccCHHHHhcc-------CCEEEE
Q 007512 197 GKTLAVLGFGK---VGSEVARRAKGL-GMHVIA--HDPYAP--ADRARAIGVD----LVSFDEAIAT-------ADFISL 257 (600)
Q Consensus 197 gktiGIIGlG~---IG~~vA~~l~~~-g~~V~~--~d~~~~--~~~a~~~g~~----~~~l~ell~~-------aDvV~l 257 (600)
-.+|||||+|. ||+..+..++.. ++++.+ +|++.. ...+.+.|+. +.++++++.+ .|+|++
T Consensus 12 ~~rvgiiG~G~~~~ig~~h~~~~~~~~~~~lva~v~d~~~~~a~~~a~~~g~~~~~~~~~~~~ll~~~~~~~~~vD~V~i 91 (398)
T 3dty_A 12 PIRWAMVGGGSQSQIGYIHRCAALRDNTFVLVAGAFDIDPIRGSAFGEQLGVDSERCYADYLSMFEQEARRADGIQAVSI 91 (398)
T ss_dssp CEEEEEEECCTTCSSHHHHHHHHHGGGSEEEEEEECCSSHHHHHHHHHHTTCCGGGBCSSHHHHHHHHTTCTTCCSEEEE
T ss_pred cceEEEEcCCccchhHHHHHHHHhhCCCeEEEEEEeCCCHHHHHHHHHHhCCCcceeeCCHHHHHhcccccCCCCCEEEE
Confidence 35899999999 999999888765 478774 688762 2345667873 3489999975 999999
Q ss_pred ecC
Q 007512 258 HMP 260 (600)
Q Consensus 258 ~~P 260 (600)
|+|
T Consensus 92 ~tp 94 (398)
T 3dty_A 92 ATP 94 (398)
T ss_dssp ESC
T ss_pred CCC
Confidence 999
|
| >2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=95.53 E-value=0.015 Score=60.38 Aligned_cols=94 Identities=14% Similarity=0.084 Sum_probs=58.7
Q ss_pred CCEEEEEecChhHHHHHHHhhcCCC--EEEEECCCCChhH--HHH--cC------Ccc-cCHHHHhccCCEEEEecCCCc
Q 007512 197 GKTLAVLGFGKVGSEVARRAKGLGM--HVIAHDPYAPADR--ARA--IG------VDL-VSFDEAIATADFISLHMPLTP 263 (600)
Q Consensus 197 gktiGIIGlG~IG~~vA~~l~~~g~--~V~~~d~~~~~~~--a~~--~g------~~~-~~l~ell~~aDvV~l~~Pl~~ 263 (600)
.++|+|||.|.+|.+++..+...++ ++..||....... +.+ .. +.. .+..+.++.||+|+++.+...
T Consensus 9 ~~KI~IiGaG~vG~~la~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~~~~~~a~~~aDvVii~ag~~~ 88 (326)
T 2zqz_A 9 HQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLSNALPFTSPKKIYSAEYSDAKDADLVVITAGAPQ 88 (326)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEEECCGGGGGGCSEEEECCCCC-
T ss_pred CCEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCCchHhHHHHHHHHHHHHhcCCeEEEECCHHHhCCCCEEEEcCCCCC
Confidence 3699999999999999999875554 8999998642111 111 11 111 144677999999999997532
Q ss_pred ccccc-------ccHh-------HhccCCCceEEEEccCCcccc
Q 007512 264 ATSKV-------LNDE-------TFGKMKKGVRIINVARGGVID 293 (600)
Q Consensus 264 ~t~~l-------i~~~-------~l~~mk~gailvNvarg~ivd 293 (600)
..++ .|.. .+.+..|+++++++ +..+|
T Consensus 89 -k~g~~R~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~--tNPv~ 129 (326)
T 2zqz_A 89 -KPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVA--ANPVD 129 (326)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHTCCSEEEEC--SSSHH
T ss_pred -CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEe--CCcHH
Confidence 2222 0111 12223689999998 44455
|
| >1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=95.51 E-value=0.018 Score=60.47 Aligned_cols=88 Identities=25% Similarity=0.357 Sum_probs=64.4
Q ss_pred cCCEEEEEecChhHHHHHHHhhcCCCEEEEECCCC-ChhHHHHcCCccc----C---HHHHhccCCEEEEecCCCccccc
Q 007512 196 VGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYA-PADRARAIGVDLV----S---FDEAIATADFISLHMPLTPATSK 267 (600)
Q Consensus 196 ~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~-~~~~a~~~g~~~~----~---l~ell~~aDvV~l~~Pl~~~t~~ 267 (600)
.|.+|.|+|.|.||...++.++.+|.+|++.+++. ..+.++++|...+ + ++++....|+|+-++....
T Consensus 194 ~g~~VlV~GaG~vG~~aiqlak~~Ga~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~g~Dvvid~~g~~~---- 269 (369)
T 1uuf_A 194 PGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKALGADEVVNSRNADEMAAHLKSFDFILNTVAAPH---- 269 (369)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTCSEEEETTCHHHHHTTTTCEEEEEECCSSCC----
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCcEEeccccHHHHHHhhcCCCEEEECCCCHH----
Confidence 48899999999999999999999999999998765 4566777886432 1 2223346788888876322
Q ss_pred cccHhHhccCCCceEEEEccC
Q 007512 268 VLNDETFGKMKKGVRIINVAR 288 (600)
Q Consensus 268 li~~~~l~~mk~gailvNvar 288 (600)
.-...+..|+++..++.++.
T Consensus 270 -~~~~~~~~l~~~G~iv~~G~ 289 (369)
T 1uuf_A 270 -NLDDFTTLLKRDGTMTLVGA 289 (369)
T ss_dssp -CHHHHHTTEEEEEEEEECCC
T ss_pred -HHHHHHHHhccCCEEEEecc
Confidence 12345667888888888764
|
| >3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A | Back alignment and structure |
|---|
Probab=95.51 E-value=0.012 Score=62.09 Aligned_cols=63 Identities=22% Similarity=0.415 Sum_probs=46.4
Q ss_pred eccCCEEEEEecChhHHHHHHHhhcCCCEEEEECCCCChhHHHHcC--C---ccc---CHHHHhccCCEEEE
Q 007512 194 SLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPADRARAIG--V---DLV---SFDEAIATADFISL 257 (600)
Q Consensus 194 ~l~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~~~~a~~~g--~---~~~---~l~ell~~aDvV~l 257 (600)
.+.+++|+|+|.|.+|+.+++.++.+|++|+++|++.... +.... . .+. .+.++++++|+|+.
T Consensus 9 ~~~~~~IlIlG~G~lg~~la~aa~~lG~~viv~d~~~~~p-~~~~ad~~~~~~~~d~~~l~~~~~~~dvi~~ 79 (377)
T 3orq_A 9 LKFGATIGIIGGGQLGKMMAQSAQKMGYKVVVLDPSEDCP-CRYVAHEFIQAKYDDEKALNQLGQKCDVITY 79 (377)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCTTCT-TGGGSSEEEECCTTCHHHHHHHHHHCSEEEE
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCh-hhhhCCEEEECCCCCHHHHHHHHHhCCccee
Confidence 4679999999999999999999999999999999876321 11110 0 111 25667788998754
|
| >3oa2_A WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD; 1.50A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=95.51 E-value=0.019 Score=59.15 Aligned_cols=63 Identities=19% Similarity=0.332 Sum_probs=47.0
Q ss_pred CEEEEEec-ChhHHHHHHHhhcCCCEEEE-ECCCCChhHH-HHc-CCc-ccCHHHHh-----------ccCCEEEEecC
Q 007512 198 KTLAVLGF-GKVGSEVARRAKGLGMHVIA-HDPYAPADRA-RAI-GVD-LVSFDEAI-----------ATADFISLHMP 260 (600)
Q Consensus 198 ktiGIIGl-G~IG~~vA~~l~~~g~~V~~-~d~~~~~~~a-~~~-g~~-~~~l~ell-----------~~aDvV~l~~P 260 (600)
.++||||+ |.||...++.++..+.++.+ +|++.....+ ... +.. +.++++++ ++.|+|++|+|
T Consensus 4 irvgiIG~gG~i~~~h~~~l~~~~~~lvav~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~l~~~~~~~vD~V~I~tP 82 (318)
T 3oa2_A 4 KNFALIGAAGYIAPRHMRAIKDTGNCLVSAYDINDSVGIIDSISPQSEFFTEFEFFLDHASNLKRDSATALDYVSICSP 82 (318)
T ss_dssp CEEEEETTTSSSHHHHHHHHHHTTCEEEEEECSSCCCGGGGGTCTTCEEESSHHHHHHHHHHHTTSTTTSCCEEEECSC
T ss_pred eEEEEECCCcHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHHhhCCCCcEECCHHHHHHhhhhhhhccCCCCcEEEECCC
Confidence 58999999 79999999999988888765 7887643222 222 233 34788876 57899999998
|
| >3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=95.49 E-value=0.013 Score=61.46 Aligned_cols=69 Identities=17% Similarity=0.248 Sum_probs=46.9
Q ss_pred eeccCCEEEEEecChhHHHHHHHhhcCCCEEEEECCCCC-hhHHHHcC----Ccc---cCHHHHhccCCEEEEecCCC
Q 007512 193 VSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAP-ADRARAIG----VDL---VSFDEAIATADFISLHMPLT 262 (600)
Q Consensus 193 ~~l~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~-~~~a~~~g----~~~---~~l~ell~~aDvV~l~~Pl~ 262 (600)
.+-+.++|+|+|.|.+|+.+|+.|.. ..+|.+.|.... .+.+.+.. +.. .++.++++++|+|+.|+|..
T Consensus 12 ~~g~~mkilvlGaG~vG~~~~~~L~~-~~~v~~~~~~~~~~~~~~~~~~~~~~d~~d~~~l~~~~~~~DvVi~~~p~~ 88 (365)
T 3abi_A 12 IEGRHMKVLILGAGNIGRAIAWDLKD-EFDVYIGDVNNENLEKVKEFATPLKVDASNFDKLVEVMKEFELVIGALPGF 88 (365)
T ss_dssp ----CCEEEEECCSHHHHHHHHHHTT-TSEEEEEESCHHHHHHHTTTSEEEECCTTCHHHHHHHHTTCSEEEECCCGG
T ss_pred ccCCccEEEEECCCHHHHHHHHHHhc-CCCeEEEEcCHHHHHHHhccCCcEEEecCCHHHHHHHHhCCCEEEEecCCc
Confidence 34455689999999999999999975 468888887652 22222211 111 24678899999999999943
|
| >3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=95.47 E-value=0.024 Score=54.88 Aligned_cols=71 Identities=23% Similarity=0.278 Sum_probs=50.0
Q ss_pred ceeccCCEEEEEec-ChhHHHHHHHhhcCCCEEEEECCCCC-hhHHHHcCC-cc------cCHHHHhccCCEEEEecCCC
Q 007512 192 GVSLVGKTLAVLGF-GKVGSEVARRAKGLGMHVIAHDPYAP-ADRARAIGV-DL------VSFDEAIATADFISLHMPLT 262 (600)
Q Consensus 192 g~~l~gktiGIIGl-G~IG~~vA~~l~~~g~~V~~~d~~~~-~~~a~~~g~-~~------~~l~ell~~aDvV~l~~Pl~ 262 (600)
-..+.||+|.|.|. |.||+.+++.|...|++|++.++... .+.....++ .. .++.+.+..+|+|+.+....
T Consensus 16 ~~~l~~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~D~vi~~ag~~ 95 (236)
T 3e8x_A 16 NLYFQGMRVLVVGANGKVARYLLSELKNKGHEPVAMVRNEEQGPELRERGASDIVVANLEEDFSHAFASIDAVVFAAGSG 95 (236)
T ss_dssp -----CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHTTCSEEEECCTTSCCGGGGTTCSEEEECCCCC
T ss_pred ccCcCCCeEEEECCCChHHHHHHHHHHhCCCeEEEEECChHHHHHHHhCCCceEEEcccHHHHHHHHcCCCEEEECCCCC
Confidence 35789999999997 99999999999999999999988763 223333355 32 23456777888888777643
|
| >1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=95.46 E-value=0.034 Score=58.18 Aligned_cols=88 Identities=23% Similarity=0.276 Sum_probs=63.0
Q ss_pred cCCEEEEEecChhHHHHHHHhhcCCC-EEEEECCCC-ChhHHHHcCCcc-c-------CHHHHhc-----cCCEEEEecC
Q 007512 196 VGKTLAVLGFGKVGSEVARRAKGLGM-HVIAHDPYA-PADRARAIGVDL-V-------SFDEAIA-----TADFISLHMP 260 (600)
Q Consensus 196 ~gktiGIIGlG~IG~~vA~~l~~~g~-~V~~~d~~~-~~~~a~~~g~~~-~-------~l~ell~-----~aDvV~l~~P 260 (600)
.|++|.|+|.|.||...++.++.+|. +|++.|+.. ..+.++++|+.. . ++.+.+. ..|+|+-++.
T Consensus 192 ~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~~g~D~vid~~g 271 (374)
T 1cdo_A 192 PGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGATDFVNPNDHSEPISQVLSKMTNGGVDFSLECVG 271 (374)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCCEEECGGGCSSCHHHHHHHHHTSCBSEEEECSC
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhCCceEEeccccchhHHHHHHHHhCCCCCEEEECCC
Confidence 48899999999999999999999999 899999776 456677788642 1 2333222 3788888776
Q ss_pred CCccccccccHhHhccCCCc-eEEEEccC
Q 007512 261 LTPATSKVLNDETFGKMKKG-VRIINVAR 288 (600)
Q Consensus 261 l~~~t~~li~~~~l~~mk~g-ailvNvar 288 (600)
..+ + -...+..++++ ..++.++-
T Consensus 272 ~~~-~----~~~~~~~l~~~~G~iv~~G~ 295 (374)
T 1cdo_A 272 NVG-V----MRNALESCLKGWGVSVLVGW 295 (374)
T ss_dssp CHH-H----HHHHHHTBCTTTCEEEECSC
T ss_pred CHH-H----HHHHHHHhhcCCcEEEEEcC
Confidence 321 1 23456667887 77777763
|
| >3aog_A Glutamate dehydrogenase; NAD(H), oxidoreducta; HET: GLU; 2.10A {Thermus thermophilus HB27} PDB: 3aoe_A | Back alignment and structure |
|---|
Probab=95.44 E-value=0.12 Score=55.70 Aligned_cols=107 Identities=20% Similarity=0.263 Sum_probs=69.8
Q ss_pred ceeccCCEEEEEecChhHHHHHHHhhcCCCEEEE--------ECCCC-ChhHHH----HcC-------CcccCHHHHhc-
Q 007512 192 GVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIA--------HDPYA-PADRAR----AIG-------VDLVSFDEAIA- 250 (600)
Q Consensus 192 g~~l~gktiGIIGlG~IG~~vA~~l~~~g~~V~~--------~d~~~-~~~~a~----~~g-------~~~~~l~ell~- 250 (600)
|.++.|+++.|.|+|.+|+.+|+.|...|.+|++ |||.- +.+... +.| .+.++.++++.
T Consensus 230 g~~l~g~~vaVqGfGnVG~~~a~~L~e~GakvVavsD~~G~i~dp~Gld~~~l~~~~~~~g~i~~y~~a~~i~~~ei~~~ 309 (440)
T 3aog_A 230 GLQVEGARVAIQGFGNVGNAAARAFHDHGARVVAVQDHTGTVYNEAGIDPYDLLRHVQEFGGVRGYPKAEPLPAADFWGL 309 (440)
T ss_dssp TCCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEECSSCEEECTTCCCHHHHHHHHHHTSSSTTCTTSEECCHHHHTTC
T ss_pred CCCccCCEEEEeccCHHHHHHHHHHHHCCCEEEEEEcCCcEEECCCCCCHHHHHHHHHhcCCcccCCCceEcCchhhhcC
Confidence 5579999999999999999999999999999984 33432 222211 122 23345566653
Q ss_pred cCCEEEEecCCCccccccccHhHhccCCCceEEEEccCCccccHHHHHHhHhcCCc
Q 007512 251 TADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVIDEEALVRALDSGRV 306 (600)
Q Consensus 251 ~aDvV~l~~Pl~~~t~~li~~~~l~~mk~gailvNvarg~ivde~aL~~aL~~g~i 306 (600)
.||+++-|.+- +.++.+....++ -.+|+-.+-+++- .++- +.|.+..|
T Consensus 310 ~~DIlvPcA~~-----n~i~~~na~~l~-ak~VvEgAN~p~t-~eA~-~iL~~~GI 357 (440)
T 3aog_A 310 PVEFLVPAALE-----KQITEQNAWRIR-ARIVAEGANGPTT-PAAD-DILLEKGV 357 (440)
T ss_dssp CCSEEEECSSS-----SCBCTTTGGGCC-CSEEECCSSSCBC-HHHH-HHHHHHTC
T ss_pred CCcEEEecCCc-----CccchhhHHHcC-CcEEEecCccccC-HHHH-HHHHHCCC
Confidence 79999998763 346666666663 4466666777763 3332 33444333
|
| >4h3v_A Oxidoreductase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.68A {Kribbella flavida} | Back alignment and structure |
|---|
Probab=95.44 E-value=0.0094 Score=62.17 Aligned_cols=63 Identities=10% Similarity=0.192 Sum_probs=46.6
Q ss_pred CEEEEEecChhHHHHHHHhhcC--------CCEEE-EECCCCC--hhHHHHcCCc--ccCHHHHhc--cCCEEEEecC
Q 007512 198 KTLAVLGFGKVGSEVARRAKGL--------GMHVI-AHDPYAP--ADRARAIGVD--LVSFDEAIA--TADFISLHMP 260 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~--------g~~V~-~~d~~~~--~~~a~~~g~~--~~~l~ell~--~aDvV~l~~P 260 (600)
-+|||||+|.||+.-++.++.. +.+|. ++|++.. ...+.+.|+. +.+++++++ +.|+|++|+|
T Consensus 7 lrvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~l~av~d~~~~~a~~~a~~~g~~~~~~d~~~ll~~~~iDaV~I~tP 84 (390)
T 4h3v_A 7 LGIGLIGYAFMGAAHSQAWRSAPRFFDLPLHPDLNVLCGRDAEAVRAAAGKLGWSTTETDWRTLLERDDVQLVDVCTP 84 (390)
T ss_dssp EEEEEECHHHHHHHHHHHHHHHHHHSCCSSEEEEEEEECSSHHHHHHHHHHHTCSEEESCHHHHTTCTTCSEEEECSC
T ss_pred CcEEEEcCCHHHHHHHHHHHhCccccccccCceEEEEEcCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEeCC
Confidence 3799999999999888777642 23665 4688762 2345567774 458999996 4899999999
|
| >1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI; HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.5 | Back alignment and structure |
|---|
Probab=95.44 E-value=0.015 Score=60.24 Aligned_cols=63 Identities=19% Similarity=0.309 Sum_probs=48.7
Q ss_pred CEEEEEecC-hhHHHHHHHhhcC--CCEEE-EECCCCCh--hHHHHcCC-c-ccCHHHHhc--cCCEEEEecC
Q 007512 198 KTLAVLGFG-KVGSEVARRAKGL--GMHVI-AHDPYAPA--DRARAIGV-D-LVSFDEAIA--TADFISLHMP 260 (600)
Q Consensus 198 ktiGIIGlG-~IG~~vA~~l~~~--g~~V~-~~d~~~~~--~~a~~~g~-~-~~~l~ell~--~aDvV~l~~P 260 (600)
.+|||||+| .+|+..++.++.. ++++. ++|++... ..+.+.|+ . +.+++++++ +.|+|++|+|
T Consensus 19 irvgiIG~G~~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~~~~~~~~~~~~ll~~~~vD~V~i~tp 91 (340)
T 1zh8_A 19 IRLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKMVGNPAVFDSYEELLESGLVDAVDLTLP 91 (340)
T ss_dssp EEEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHHHSSCEEESCHHHHHHSSCCSEEEECCC
T ss_pred eeEEEEecCHHHHHHHHHHHHhCCCceEEEEEEcCCHHHHHHHHHHhCCCcccCCHHHHhcCCCCCEEEEeCC
Confidence 489999999 8999999999876 57775 57887622 23445566 3 458999986 5899999998
|
| >3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=95.42 E-value=0.0092 Score=60.93 Aligned_cols=52 Identities=13% Similarity=0.137 Sum_probs=44.1
Q ss_pred CccEEEEEecCCCCChhhHHhhhhcCCccccceEeeeecCCCcEEEEEEeCC
Q 007512 525 EGSIILCRQVDQPGMIGTVGSILGSENVNVSFMSVGRVAPRKHAVMAIGVDE 576 (600)
Q Consensus 525 ~~~~Liv~~~D~pG~Ia~V~~iL~~~~INIa~m~v~R~~~g~~al~~i~~D~ 576 (600)
..+.|.+..+|+||+|+.|++.|+++|+||..++.......+.-+|+++++-
T Consensus 5 ~~~iLtv~g~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~ 56 (288)
T 3obi_A 5 HQYVLTLSCPDRAGIVSAVSTFLFENGQNILDAQQYNDTESGHFFMRVVFNA 56 (288)
T ss_dssp CEEEEEEEEECCTTHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEEEE
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHCCCcEEeeeeeecCCCCceEEEEEEEc
Confidence 3456788899999999999999999999999999876566777788887764
|
| >1ys4_A Aspartate-semialdehyde dehydrogenase; oxidoreductase, asadh; HET: NAP; 2.29A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=95.41 E-value=0.014 Score=61.27 Aligned_cols=86 Identities=19% Similarity=0.111 Sum_probs=51.5
Q ss_pred CEEEEEe-cChhHHHHHHHhhcC-CCEEEEE--CCCCC-hhHHHHcC---------------CcccCHHHHhc-cCCEEE
Q 007512 198 KTLAVLG-FGKVGSEVARRAKGL-GMHVIAH--DPYAP-ADRARAIG---------------VDLVSFDEAIA-TADFIS 256 (600)
Q Consensus 198 ktiGIIG-lG~IG~~vA~~l~~~-g~~V~~~--d~~~~-~~~a~~~g---------------~~~~~l~ell~-~aDvV~ 256 (600)
.+|||+| .|.||+.+++.|... +++|.+. ++... .......+ +...+++++++ .+|+|+
T Consensus 9 ~kV~IiGAtG~iG~~llr~L~~~p~~ev~~i~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvV~ 88 (354)
T 1ys4_A 9 IKVGVLGATGSVGQRFVQLLADHPMFELTALAASERSAGKKYKDACYWFQDRDIPENIKDMVVIPTDPKHEEFEDVDIVF 88 (354)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTCSSEEEEEEEECTTTTTSBHHHHSCCCCSSCCCHHHHTCBCEESCTTSGGGTTCCEEE
T ss_pred ceEEEECcCCHHHHHHHHHHhcCCCCEEEEEEcccccccccHHHhcccccccccccCceeeEEEeCCHHHHhcCCCCEEE
Confidence 5899999 999999999999866 4788765 33221 11111111 11124555556 899999
Q ss_pred EecCCCccccccccHhHhccCCCceEEEEccC
Q 007512 257 LHMPLTPATSKVLNDETFGKMKKGVRIINVAR 288 (600)
Q Consensus 257 l~~Pl~~~t~~li~~~~l~~mk~gailvNvar 288 (600)
+|+|... +..+. . ..++.|+.+||.+.
T Consensus 89 ~atp~~~-~~~~a-~---~~~~aG~~VId~s~ 115 (354)
T 1ys4_A 89 SALPSDL-AKKFE-P---EFAKEGKLIFSNAS 115 (354)
T ss_dssp ECCCHHH-HHHHH-H---HHHHTTCEEEECCS
T ss_pred ECCCchH-HHHHH-H---HHHHCCCEEEECCc
Confidence 9998332 22111 1 11346777777753
|
| >2nqt_A N-acetyl-gamma-glutamyl-phosphate reductase; apoprotein, dimer, rossmann fold, structural genomics, PSI, protein structure initiative; 1.58A {Mycobacterium tuberculosis} PDB: 2i3a_A* 2i3g_A | Back alignment and structure |
|---|
Probab=95.36 E-value=0.017 Score=60.52 Aligned_cols=95 Identities=17% Similarity=0.147 Sum_probs=59.1
Q ss_pred CEEEEEe-cChhHHHHHHHhhcCC------CEEEEEC-CC-CC--hhH----HHH-cCCcc--cCHHHHhccCCEEEEec
Q 007512 198 KTLAVLG-FGKVGSEVARRAKGLG------MHVIAHD-PY-AP--ADR----ARA-IGVDL--VSFDEAIATADFISLHM 259 (600)
Q Consensus 198 ktiGIIG-lG~IG~~vA~~l~~~g------~~V~~~d-~~-~~--~~~----a~~-~g~~~--~~l~ell~~aDvV~l~~ 259 (600)
.+|+|+| .|.+|+.+.+.|...+ .++..+. +. .. ... ... ..+.. .+. +.+..+|+|++|+
T Consensus 10 ~kVaIvGATG~vG~~llr~L~~~~~~~~~~~ei~~l~s~~~agk~~~~~~~~l~~~~~~~~~~~~~-~~~~~~DvVf~al 88 (352)
T 2nqt_A 10 TKVAVAGASGYAGGEILRLLLGHPAYADGRLRIGALTAATSAGSTLGEHHPHLTPLAHRVVEPTEA-AVLGGHDAVFLAL 88 (352)
T ss_dssp EEEEEETTTSHHHHHHHHHHHTCHHHHTTSEEEEEEEESSCTTSBGGGTCTTCGGGTTCBCEECCH-HHHTTCSEEEECC
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCCCccEEEEEEECCCcCCCchhhhcccccccceeeeccCCH-HHhcCCCEEEECC
Confidence 5899999 9999999999998765 4776653 22 11 110 000 11111 233 3466899999999
Q ss_pred CCCccccccccHhHhccCCCceEEEEccCCccccHHHHHH
Q 007512 260 PLTPATSKVLNDETFGKMKKGVRIINVARGGVIDEEALVR 299 (600)
Q Consensus 260 Pl~~~t~~li~~~~l~~mk~gailvNvarg~ivde~aL~~ 299 (600)
|... ..+....++.|+.+||.+..--.+..+.++
T Consensus 89 g~~~------s~~~~~~~~~G~~vIDlSa~~R~~~~~~~~ 122 (352)
T 2nqt_A 89 PHGH------SAVLAQQLSPETLIIDCGADFRLTDAAVWE 122 (352)
T ss_dssp TTSC------CHHHHHHSCTTSEEEECSSTTTCSCHHHHH
T ss_pred CCcc------hHHHHHHHhCCCEEEEECCCccCCcchhhh
Confidence 9553 344444446789999998544444434443
|
| >2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ... | Back alignment and structure |
|---|
Probab=95.36 E-value=0.036 Score=57.98 Aligned_cols=87 Identities=24% Similarity=0.275 Sum_probs=60.1
Q ss_pred cCCEEEEEecChhHHHHHHHhhcCCC-EEEEECCCC-ChhHHHHcCCcc-cC-------HHHHhc-----cCCEEEEecC
Q 007512 196 VGKTLAVLGFGKVGSEVARRAKGLGM-HVIAHDPYA-PADRARAIGVDL-VS-------FDEAIA-----TADFISLHMP 260 (600)
Q Consensus 196 ~gktiGIIGlG~IG~~vA~~l~~~g~-~V~~~d~~~-~~~~a~~~g~~~-~~-------l~ell~-----~aDvV~l~~P 260 (600)
.|++|.|+|.|.||...++.++.+|. +|++.++.. ..+.++++|... .+ +.+.+. ..|+|+-++.
T Consensus 191 ~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~~g~D~vid~~g 270 (374)
T 2jhf_A 191 QGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECVNPQDYKKPIQEVLTEMSNGGVDFSFEVIG 270 (374)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEECSC
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCceEecccccchhHHHHHHHHhCCCCcEEEECCC
Confidence 47899999999999999999999999 899999776 456677778642 11 222222 3677777765
Q ss_pred CCccccccccHhHhccCCCc-eEEEEcc
Q 007512 261 LTPATSKVLNDETFGKMKKG-VRIINVA 287 (600)
Q Consensus 261 l~~~t~~li~~~~l~~mk~g-ailvNva 287 (600)
..+ + -...+..++++ ..++.++
T Consensus 271 ~~~-~----~~~~~~~l~~~~G~iv~~G 293 (374)
T 2jhf_A 271 RLD-T----MVTALSCCQEAYGVSVIVG 293 (374)
T ss_dssp CHH-H----HHHHHHHBCTTTCEEEECS
T ss_pred CHH-H----HHHHHHHhhcCCcEEEEec
Confidence 211 1 13445567777 6777665
|
| >4gmf_A Yersiniabactin biosynthetic protein YBTU; rossmann fold, NADPH dependent thiazoline reductase, oxidore; HET: EPE; 1.85A {Yersinia enterocolitica subsp} PDB: 4gmg_A* | Back alignment and structure |
|---|
Probab=95.36 E-value=0.014 Score=61.75 Aligned_cols=64 Identities=14% Similarity=0.209 Sum_probs=50.7
Q ss_pred CCEEEEEecChhHHHHHHHhhcC--CCEEEE-ECCCC--ChhHHHHcCCcc-cCHHHHhccCCEEEEecCC
Q 007512 197 GKTLAVLGFGKVGSEVARRAKGL--GMHVIA-HDPYA--PADRARAIGVDL-VSFDEAIATADFISLHMPL 261 (600)
Q Consensus 197 gktiGIIGlG~IG~~vA~~l~~~--g~~V~~-~d~~~--~~~~a~~~g~~~-~~l~ell~~aDvV~l~~Pl 261 (600)
-.+|||||.| +|+.-++.++.. ++++.+ +|+.. ....+.+.|+.. .++++++.+.|++++++|.
T Consensus 7 ~~rv~VvG~G-~g~~h~~a~~~~~~~~elvav~~~~~~~a~~~a~~~gv~~~~~~~~l~~~~D~v~i~~p~ 76 (372)
T 4gmf_A 7 KQRVLIVGAK-FGEMYLNAFMQPPEGLELVGLLAQGSARSRELAHAFGIPLYTSPEQITGMPDIACIVVRS 76 (372)
T ss_dssp CEEEEEECST-TTHHHHHTTSSCCTTEEEEEEECCSSHHHHHHHHHTTCCEESSGGGCCSCCSEEEECCC-
T ss_pred CCEEEEEehH-HHHHHHHHHHhCCCCeEEEEEECCCHHHHHHHHHHhCCCEECCHHHHhcCCCEEEEECCC
Confidence 3589999999 699888888765 688875 68876 234567788864 5899999999999999993
|
| >1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A | Back alignment and structure |
|---|
Probab=95.33 E-value=0.017 Score=59.74 Aligned_cols=88 Identities=22% Similarity=0.353 Sum_probs=62.0
Q ss_pred cCCEEEEEecChhHHHHHHHhhcCCCEEEEECCCC-ChhHHHHcCCccc------CHHHHh----ccCCEEEEecCCCcc
Q 007512 196 VGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYA-PADRARAIGVDLV------SFDEAI----ATADFISLHMPLTPA 264 (600)
Q Consensus 196 ~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~-~~~~a~~~g~~~~------~l~ell----~~aDvV~l~~Pl~~~ 264 (600)
.|++|.|+|.|.||..+++.++.+|++|++.+++. ..+.++++|...+ ++.+.+ ...|+|+-++...+
T Consensus 164 ~g~~VlV~GaG~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~lGa~~~~d~~~~~~~~~~~~~~~~~d~vid~~g~~~- 242 (339)
T 1rjw_A 164 PGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKELGADLVVNPLKEDAAKFMKEKVGGVHAAVVTAVSKP- 242 (339)
T ss_dssp TTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCSEEECTTTSCHHHHHHHHHSSEEEEEESSCCHH-
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHCCCCEEecCCCccHHHHHHHHhCCCCEEEECCCCHH-
Confidence 37899999999999999999999999999999875 3455667776421 222222 35788887776322
Q ss_pred ccccccHhHhccCCCceEEEEccC
Q 007512 265 TSKVLNDETFGKMKKGVRIINVAR 288 (600)
Q Consensus 265 t~~li~~~~l~~mk~gailvNvar 288 (600)
.-...+..|+++..++.++.
T Consensus 243 ----~~~~~~~~l~~~G~~v~~g~ 262 (339)
T 1rjw_A 243 ----AFQSAYNSIRRGGACVLVGL 262 (339)
T ss_dssp ----HHHHHHHHEEEEEEEEECCC
T ss_pred ----HHHHHHHHhhcCCEEEEecc
Confidence 12345566778888887764
|
| >2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A* | Back alignment and structure |
|---|
Probab=95.32 E-value=0.042 Score=59.98 Aligned_cols=101 Identities=22% Similarity=0.278 Sum_probs=69.3
Q ss_pred ceeccCCEEEEEecCh----------hHHHHHHHhhcCCCEEEEECCCCChhHHHHcC------------Cccc-CHHHH
Q 007512 192 GVSLVGKTLAVLGFGK----------VGSEVARRAKGLGMHVIAHDPYAPADRARAIG------------VDLV-SFDEA 248 (600)
Q Consensus 192 g~~l~gktiGIIGlG~----------IG~~vA~~l~~~g~~V~~~d~~~~~~~a~~~g------------~~~~-~l~el 248 (600)
+..+.|++|+|+|+-- =...+++.|...|.+|.+|||....+.....+ +.+. ++.+.
T Consensus 323 ~~~~~~~~v~vlGlafK~~~dD~R~Sp~~~i~~~L~~~g~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (478)
T 2y0c_A 323 GEDLTGRTFAIWGLAFKPNTDDMREAPSRELIAELLSRGARIAAYDPVAQEEARRVIALDLADHPSWLERLSFVDDEAQA 402 (478)
T ss_dssp CSCCTTCEEEEECCSSSSSCCCCTTCHHHHHHHHHHHTTCEEEEECTTTHHHHHHHHHHHTTTCHHHHTTEEECSSHHHH
T ss_pred cccCCCCEEEEEecccCCCCCccccChHHHHHHHHHHCCCEEEEECCCccHHHHHhhccccccccccccceeecCCHHHH
Confidence 4468999999999843 46789999999999999999997332112122 3433 67889
Q ss_pred hccCCEEEEecCCCccccccccHhHh-ccCCCceEEEEccCCccccHHHH
Q 007512 249 IATADFISLHMPLTPATSKVLNDETF-GKMKKGVRIINVARGGVIDEEAL 297 (600)
Q Consensus 249 l~~aDvV~l~~Pl~~~t~~li~~~~l-~~mk~gailvNvarg~ivde~aL 297 (600)
++.||+|++++.-. +-+. ++-+.+ ..|+ ..+|+|+ |+ +.+.+.+
T Consensus 403 ~~~ad~~vi~t~~~-~f~~-~~~~~~~~~~~-~~~i~D~-r~-~~~~~~~ 447 (478)
T 2y0c_A 403 ARDADALVIVTEWK-IFKS-PDFVALGRLWK-TPVIFDG-RN-LYEPETM 447 (478)
T ss_dssp TTTCSEEEECSCCG-GGGS-CCHHHHHTTCS-SCEEEES-SC-CSCHHHH
T ss_pred HhCCCEEEEecCCh-Hhhc-cCHHHHHhhcC-CCEEEEC-CC-CCCHHHH
Confidence 99999999999843 3333 344444 4455 4789997 43 3465543
|
| >1cf2_P Protein (glyceraldehyde-3-phosphate dehydrogenase); oxydoreductase, oxidoreductase; HET: NAP; 2.10A {Methanothermus fervidus} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=95.30 E-value=0.013 Score=61.21 Aligned_cols=64 Identities=25% Similarity=0.335 Sum_probs=43.9
Q ss_pred EEEEEecChhHHHHHHHhhc-CCCEEEEE-CCCCCh--hHHHHc------------------CCcc-cCHHHHhccCCEE
Q 007512 199 TLAVLGFGKVGSEVARRAKG-LGMHVIAH-DPYAPA--DRARAI------------------GVDL-VSFDEAIATADFI 255 (600)
Q Consensus 199 tiGIIGlG~IG~~vA~~l~~-~g~~V~~~-d~~~~~--~~a~~~------------------g~~~-~~l~ell~~aDvV 255 (600)
+|||+|+|.||+.+++.+.. -++++.+. |..... ..+... ++.. .+.++++.++|+|
T Consensus 3 kVgIiGaG~iG~~l~r~L~~~~~~elvav~d~~~~~~~~~~~~~g~~~~~~~~~~v~~~~~~~l~v~~~~~~~~~~vDvV 82 (337)
T 1cf2_P 3 AVAINGYGTVGKRVADAIAQQDDMKVIGVSKTRPDFEARMALKKGYDLYVAIPERVKLFEKAGIEVAGTVDDMLDEADIV 82 (337)
T ss_dssp EEEEECCSTTHHHHHHHHHTSSSEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHTTCCCCEEHHHHHHTCSEE
T ss_pred EEEEEeECHHHHHHHHHHHcCCCcEEEEEEcCChhHHHHhcCCcchhhccccccceeeecCCceEEcCCHHHHhcCCCEE
Confidence 79999999999999999986 47888764 443221 112221 1111 1466777899999
Q ss_pred EEecCCC
Q 007512 256 SLHMPLT 262 (600)
Q Consensus 256 ~l~~Pl~ 262 (600)
+.|+|..
T Consensus 83 ~~atp~~ 89 (337)
T 1cf2_P 83 IDCTPEG 89 (337)
T ss_dssp EECCSTT
T ss_pred EECCCch
Confidence 9999944
|
| >2dt5_A AT-rich DNA-binding protein; REX, NADH, NAD, rossmann fold, redox sensing, winged helix, themophilus; HET: NAD; 2.16A {Thermus thermophilus} SCOP: a.4.5.38 c.2.1.12 PDB: 1xcb_A* 3ikt_A* 3ikv_A 3il2_A* | Back alignment and structure |
|---|
Probab=95.30 E-value=0.0085 Score=58.39 Aligned_cols=63 Identities=16% Similarity=0.218 Sum_probs=43.7
Q ss_pred CEEEEEecChhHHHHHHHh--hcCCCEEEE-ECCCCChhHHHHcCCc---ccCHHHHhc-cCCEEEEecCC
Q 007512 198 KTLAVLGFGKVGSEVARRA--KGLGMHVIA-HDPYAPADRARAIGVD---LVSFDEAIA-TADFISLHMPL 261 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l--~~~g~~V~~-~d~~~~~~~a~~~g~~---~~~l~ell~-~aDvV~l~~Pl 261 (600)
++++|||.|.+|+.+++.+ .. |+++.+ +|.++........|+. ..+++++++ +.|.|++|+|.
T Consensus 81 ~rV~IIGaG~~G~~la~~~~~~~-g~~iVg~~D~dp~k~g~~i~gv~V~~~~dl~ell~~~ID~ViIA~Ps 150 (211)
T 2dt5_A 81 WGLCIVGMGRLGSALADYPGFGE-SFELRGFFDVDPEKVGRPVRGGVIEHVDLLPQRVPGRIEIALLTVPR 150 (211)
T ss_dssp EEEEEECCSHHHHHHHHCSCCCS-SEEEEEEEESCTTTTTCEETTEEEEEGGGHHHHSTTTCCEEEECSCH
T ss_pred CEEEEECccHHHHHHHHhHhhcC-CcEEEEEEeCCHHHHhhhhcCCeeecHHhHHHHHHcCCCEEEEeCCc
Confidence 5799999999999999963 35 888877 5655422111112332 346888876 59999999993
|
| >1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A* | Back alignment and structure |
|---|
Probab=95.27 E-value=0.035 Score=58.09 Aligned_cols=87 Identities=21% Similarity=0.205 Sum_probs=61.9
Q ss_pred cCCEEEEEecChhHHHHHHHhhcCCC-EEEEECCCC-ChhHHHHcCCccc-C-------HHHHhc-----cCCEEEEecC
Q 007512 196 VGKTLAVLGFGKVGSEVARRAKGLGM-HVIAHDPYA-PADRARAIGVDLV-S-------FDEAIA-----TADFISLHMP 260 (600)
Q Consensus 196 ~gktiGIIGlG~IG~~vA~~l~~~g~-~V~~~d~~~-~~~~a~~~g~~~~-~-------l~ell~-----~aDvV~l~~P 260 (600)
.|++|.|+|.|.||...++.++.+|. +|++.|+.. ..+.++++|+..+ + +.+.+. ..|+|+-++.
T Consensus 191 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~i~~~t~gg~Dvvid~~g 270 (373)
T 1p0f_A 191 PGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGATECLNPKDYDKPIYEVICEKTNGGVDYAVECAG 270 (373)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEECSC
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCcEEEecccccchHHHHHHHHhCCCCCEEEECCC
Confidence 48899999999999999999999998 899999776 4567778887421 1 222222 4788887776
Q ss_pred CCccccccccHhHhccCCCc-eEEEEcc
Q 007512 261 LTPATSKVLNDETFGKMKKG-VRIINVA 287 (600)
Q Consensus 261 l~~~t~~li~~~~l~~mk~g-ailvNva 287 (600)
..+ + -...+..++++ ..++.++
T Consensus 271 ~~~-~----~~~~~~~l~~~~G~iv~~G 293 (373)
T 1p0f_A 271 RIE-T----MMNALQSTYCGSGVTVVLG 293 (373)
T ss_dssp CHH-H----HHHHHHTBCTTTCEEEECC
T ss_pred CHH-H----HHHHHHHHhcCCCEEEEEc
Confidence 211 1 13456667777 7777776
|
| >2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* | Back alignment and structure |
|---|
Probab=95.26 E-value=0.013 Score=60.85 Aligned_cols=87 Identities=20% Similarity=0.259 Sum_probs=57.2
Q ss_pred cCCEEEEEecChhHHHHHHHhhcCCC-EEEEECCCC-ChhHHHHcCCccc------CHHHHhc------cCCEEEEecCC
Q 007512 196 VGKTLAVLGFGKVGSEVARRAKGLGM-HVIAHDPYA-PADRARAIGVDLV------SFDEAIA------TADFISLHMPL 261 (600)
Q Consensus 196 ~gktiGIIGlG~IG~~vA~~l~~~g~-~V~~~d~~~-~~~~a~~~g~~~~------~l~ell~------~aDvV~l~~Pl 261 (600)
.|++|.|+|.|.||...++.++.+|. +|++.++.. ..+.+++.|...+ ++.+.+. ..|+|+-+++.
T Consensus 167 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~v~~~~~g~g~D~vid~~g~ 246 (348)
T 2d8a_A 167 SGKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELAKKVGADYVINPFEEDVVKEVMDITDGNGVDVFLEFSGA 246 (348)
T ss_dssp TTCCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHHTCSEEECTTTSCHHHHHHHHTTTSCEEEEEECSCC
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEECCCCcCHHHHHHHHcCCCCCCEEEECCCC
Confidence 68999999999999999999999999 999999875 3455666675321 2222111 36666666652
Q ss_pred CccccccccHhHhccCCCceEEEEcc
Q 007512 262 TPATSKVLNDETFGKMKKGVRIINVA 287 (600)
Q Consensus 262 ~~~t~~li~~~~l~~mk~gailvNva 287 (600)
.+ + -...+..|+++..+++++
T Consensus 247 ~~-~----~~~~~~~l~~~G~iv~~g 267 (348)
T 2d8a_A 247 PK-A----LEQGLQAVTPAGRVSLLG 267 (348)
T ss_dssp HH-H----HHHHHHHEEEEEEEEECC
T ss_pred HH-H----HHHHHHHHhcCCEEEEEc
Confidence 11 1 133344556666666665
|
| >3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58} | Back alignment and structure |
|---|
Probab=95.25 E-value=0.032 Score=57.65 Aligned_cols=62 Identities=23% Similarity=0.254 Sum_probs=47.8
Q ss_pred CCEEEEEecChhHHH-HHHHhhcCCCEEEEECCCCCh---hHHHHcCCccc---CHHHHh-ccCCEEEEe
Q 007512 197 GKTLAVLGFGKVGSE-VARRAKGLGMHVIAHDPYAPA---DRARAIGVDLV---SFDEAI-ATADFISLH 258 (600)
Q Consensus 197 gktiGIIGlG~IG~~-vA~~l~~~g~~V~~~d~~~~~---~~a~~~g~~~~---~l~ell-~~aDvV~l~ 258 (600)
.|+|.|||+|.+|.+ +|+.|+..|++|.++|..... +...+.|+... +.+++. .++|+|+..
T Consensus 4 ~~~i~~iGiGg~Gms~~A~~L~~~G~~V~~~D~~~~~~~~~~L~~~gi~v~~g~~~~~l~~~~~d~vV~S 73 (326)
T 3eag_A 4 MKHIHIIGIGGTFMGGLAAIAKEAGFEVSGCDAKMYPPMSTQLEALGIDVYEGFDAAQLDEFKADVYVIG 73 (326)
T ss_dssp CCEEEEESCCSHHHHHHHHHHHHTTCEEEEEESSCCTTHHHHHHHTTCEEEESCCGGGGGSCCCSEEEEC
T ss_pred CcEEEEEEECHHHHHHHHHHHHhCCCEEEEEcCCCCcHHHHHHHhCCCEEECCCCHHHcCCCCCCEEEEC
Confidence 578999999999996 999999999999999986522 23455687543 344555 579999885
|
| >1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A* | Back alignment and structure |
|---|
Probab=95.25 E-value=0.043 Score=57.43 Aligned_cols=88 Identities=24% Similarity=0.218 Sum_probs=61.2
Q ss_pred cCCEEEEEecChhHHHHHHHhhcCCC-EEEEECCCC-ChhHHHHcCCccc-C-------HHHHhc-----cCCEEEEecC
Q 007512 196 VGKTLAVLGFGKVGSEVARRAKGLGM-HVIAHDPYA-PADRARAIGVDLV-S-------FDEAIA-----TADFISLHMP 260 (600)
Q Consensus 196 ~gktiGIIGlG~IG~~vA~~l~~~g~-~V~~~d~~~-~~~~a~~~g~~~~-~-------l~ell~-----~aDvV~l~~P 260 (600)
.|++|.|+|.|.||...++.++.+|. +|++.|+.. ..+.++++|+..+ + +.+.+. ..|+|+-++.
T Consensus 195 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~v~~~~~~g~Dvvid~~G 274 (376)
T 1e3i_A 195 PGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGATDCLNPRELDKPVQDVITELTAGGVDYSLDCAG 274 (376)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHHTSCBSEEEESSC
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCcEEEccccccchHHHHHHHHhCCCccEEEECCC
Confidence 48899999999999999999999999 899999776 4566777886421 1 222222 3688877765
Q ss_pred CCccccccccHhHhccCCCc-eEEEEccC
Q 007512 261 LTPATSKVLNDETFGKMKKG-VRIINVAR 288 (600)
Q Consensus 261 l~~~t~~li~~~~l~~mk~g-ailvNvar 288 (600)
..+ + -...+..++++ ..++.++-
T Consensus 275 ~~~-~----~~~~~~~l~~~~G~iv~~G~ 298 (376)
T 1e3i_A 275 TAQ-T----LKAAVDCTVLGWGSCTVVGA 298 (376)
T ss_dssp CHH-H----HHHHHHTBCTTTCEEEECCC
T ss_pred CHH-H----HHHHHHHhhcCCCEEEEECC
Confidence 211 1 13455667777 77776653
|
| >1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A | Back alignment and structure |
|---|
Probab=95.21 E-value=0.015 Score=58.06 Aligned_cols=97 Identities=15% Similarity=0.240 Sum_probs=61.1
Q ss_pred HHHHHHcCccccccccceeccCCEEEEEecChhHHHHHHHhhcCCC-EEEEECCCC-Ch----------------hHH--
Q 007512 176 ADASVKAGKWQRNKYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGM-HVIAHDPYA-PA----------------DRA-- 235 (600)
Q Consensus 176 ~~~~~~~g~W~~~~~~g~~l~gktiGIIGlG~IG~~vA~~l~~~g~-~V~~~d~~~-~~----------------~~a-- 235 (600)
+.++++-..|... ....|++++|.|||+|.+|+.+|+.|...|. ++..+|+.. .. .++
T Consensus 9 y~Rq~~l~~~g~~--~q~~l~~~~VlvvG~GglG~~va~~La~~Gvg~i~lvD~d~v~~sNL~Rq~l~~~~diG~~Ka~~ 86 (251)
T 1zud_1 9 YSRQILLDDIALD--GQQKLLDSQVLIIGLGGLGTPAALYLAGAGVGTLVLADDDDVHLSNLQRQILFTTEDIDRPKSQV 86 (251)
T ss_dssp THHHHTSTTTHHH--HHHHHHTCEEEEECCSTTHHHHHHHHHHTTCSEEEEECCCBCCGGGTTTCTTCCGGGTTSBHHHH
T ss_pred hhhhcchhhcCHH--HHHHHhcCcEEEEccCHHHHHHHHHHHHcCCCeEEEEeCCCcccccCCCCccCChhhCCCHHHHH
Confidence 3344444456432 1246899999999999999999999998886 788887643 10 011
Q ss_pred -----HHc--CCc--c-------cCHHHHhccCCEEEEecCCCccccccccHhHhc
Q 007512 236 -----RAI--GVD--L-------VSFDEAIATADFISLHMPLTPATSKVLNDETFG 275 (600)
Q Consensus 236 -----~~~--g~~--~-------~~l~ell~~aDvV~l~~Pl~~~t~~li~~~~l~ 275 (600)
.+. +++ . .+++++++++|+|+.++. +.+++.++++....
T Consensus 87 ~~~~l~~~np~~~v~~~~~~~~~~~~~~~~~~~DvVi~~~d-~~~~r~~l~~~~~~ 141 (251)
T 1zud_1 87 SQQRLTQLNPDIQLTALQQRLTGEALKDAVARADVVLDCTD-NMATRQEINAACVA 141 (251)
T ss_dssp HHHHHHHHCTTSEEEEECSCCCHHHHHHHHHHCSEEEECCS-SHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCEEEEEeccCCHHHHHHHHhcCCEEEECCC-CHHHHHHHHHHHHH
Confidence 011 111 0 124566777888888776 55566666665443
|
| >3v5n_A Oxidoreductase; structural genomics, PSI-biology, protein structure initiati nysgrc, NEW YORK structural genomics research consortium; 2.80A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=95.21 E-value=0.017 Score=61.71 Aligned_cols=65 Identities=18% Similarity=0.285 Sum_probs=49.2
Q ss_pred CEEEEEecCh---hHHHHHHHhhcCC-CEEE--EECCCCC--hhHHHHcCCc----ccCHHHHhcc-------CCEEEEe
Q 007512 198 KTLAVLGFGK---VGSEVARRAKGLG-MHVI--AHDPYAP--ADRARAIGVD----LVSFDEAIAT-------ADFISLH 258 (600)
Q Consensus 198 ktiGIIGlG~---IG~~vA~~l~~~g-~~V~--~~d~~~~--~~~a~~~g~~----~~~l~ell~~-------aDvV~l~ 258 (600)
.+|||||+|. ||+..+..++..+ +++. ++|++.. ...+.+.|+. +.++++++++ .|+|++|
T Consensus 38 ~rvgiiG~G~~~~ig~~h~~~~~~~~~~~lva~v~d~~~~~a~~~a~~~g~~~~~~~~~~~~ll~~~~~~~~~vD~V~I~ 117 (417)
T 3v5n_A 38 IRLGMVGGGSGAFIGAVHRIAARLDDHYELVAGALSSTPEKAEASGRELGLDPSRVYSDFKEMAIREAKLKNGIEAVAIV 117 (417)
T ss_dssp EEEEEESCC--CHHHHHHHHHHHHTSCEEEEEEECCSSHHHHHHHHHHHTCCGGGBCSCHHHHHHHHHHCTTCCSEEEEC
T ss_pred ceEEEEcCCCchHHHHHHHHHHhhCCCcEEEEEEeCCCHHHHHHHHHHcCCCcccccCCHHHHHhcccccCCCCcEEEEC
Confidence 4899999999 9999988887654 7876 4688762 2345567873 3589999976 9999999
Q ss_pred cCCC
Q 007512 259 MPLT 262 (600)
Q Consensus 259 ~Pl~ 262 (600)
+|..
T Consensus 118 tp~~ 121 (417)
T 3v5n_A 118 TPNH 121 (417)
T ss_dssp SCTT
T ss_pred CCcH
Confidence 9943
|
| >3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=95.20 E-value=0.023 Score=59.52 Aligned_cols=64 Identities=11% Similarity=0.104 Sum_probs=48.1
Q ss_pred CCEEEEEecChhHH-HHHHHhhcCCCEEEE-ECCCCC--hhHHHHcCC-c-ccCHHHHhcc--CCEEEEecC
Q 007512 197 GKTLAVLGFGKVGS-EVARRAKGLGMHVIA-HDPYAP--ADRARAIGV-D-LVSFDEAIAT--ADFISLHMP 260 (600)
Q Consensus 197 gktiGIIGlG~IG~-~vA~~l~~~g~~V~~-~d~~~~--~~~a~~~g~-~-~~~l~ell~~--aDvV~l~~P 260 (600)
-.+|||||+|.+|. .++..++.-++++.+ +|++.. ...+.+.|. . +.++++++.+ .|+|++|+|
T Consensus 26 ~irvgiiG~G~~~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~vD~V~I~tp 97 (361)
T 3u3x_A 26 ELRFAAVGLNHNHIYGQVNCLLRAGARLAGFHEKDDALAAEFSAVYADARRIATAEEILEDENIGLIVSAAV 97 (361)
T ss_dssp CCEEEEECCCSTTHHHHHHHHHHTTCEEEEEECSCHHHHHHHHHHSSSCCEESCHHHHHTCTTCCEEEECCC
T ss_pred CcEEEEECcCHHHHHHHHHHhhcCCcEEEEEEcCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEeCC
Confidence 35899999999995 567777767888764 788762 233455663 3 4589999975 899999998
|
| >3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=95.20 E-value=0.043 Score=51.95 Aligned_cols=65 Identities=15% Similarity=0.241 Sum_probs=47.4
Q ss_pred CEEEEEe-cChhHHHHHHHhhcCCCEEEEECCCCChhHHHHcCCccc--CHH----HHhccCCEEEEecCCC
Q 007512 198 KTLAVLG-FGKVGSEVARRAKGLGMHVIAHDPYAPADRARAIGVDLV--SFD----EAIATADFISLHMPLT 262 (600)
Q Consensus 198 ktiGIIG-lG~IG~~vA~~l~~~g~~V~~~d~~~~~~~a~~~g~~~~--~l~----ell~~aDvV~l~~Pl~ 262 (600)
++|.|.| .|.||+.+++.|...|.+|++.++..........++..+ ++. +.+..+|+|+.+....
T Consensus 1 MkvlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~d~vi~~ag~~ 72 (221)
T 3ew7_A 1 MKIGIIGATGRAGSRILEEAKNRGHEVTAIVRNAGKITQTHKDINILQKDIFDLTLSDLSDQNVVVDAYGIS 72 (221)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCSHHHHHHCSSSEEEECCGGGCCHHHHTTCSEEEECCCSS
T ss_pred CeEEEEcCCchhHHHHHHHHHhCCCEEEEEEcCchhhhhccCCCeEEeccccChhhhhhcCCCEEEECCcCC
Confidence 4789999 599999999999999999999998763222111344321 222 6788899999888754
|
| >3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=95.19 E-value=0.028 Score=57.27 Aligned_cols=53 Identities=9% Similarity=-0.003 Sum_probs=45.3
Q ss_pred CccEEEEEecCCCCChhhHHhhhhcCCccccceEeeeecCCCcEEEEEEeCCC
Q 007512 525 EGSIILCRQVDQPGMIGTVGSILGSENVNVSFMSVGRVAPRKHAVMAIGVDEQ 577 (600)
Q Consensus 525 ~~~~Liv~~~D~pG~Ia~V~~iL~~~~INIa~m~v~R~~~g~~al~~i~~D~~ 577 (600)
+.+.|.+..+|+||+|+.|++.|+++|+||..++..-....+.-+|+++++-+
T Consensus 7 ~~~vLtv~c~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~ 59 (286)
T 3n0v_A 7 DTWILTADCPSMLGTVDVVTRYLFEQRCYVTEHHSFDDRQSGRFFIRVEFRQP 59 (286)
T ss_dssp CCEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEEEECC
T ss_pred CcEEEEEEeCCCCCHHHHHHHHHHHCCCCeeeeeeeccCCCCeeEEEEEEecC
Confidence 34678888999999999999999999999999998765667777888888754
|
| >2nvw_A Galactose/lactose metabolism regulatory protein GAL80; transcription, galactose metabolism, repressor; 2.10A {Kluyveromyces lactis} SCOP: c.2.1.3 d.81.1.5 PDB: 3e1k_A | Back alignment and structure |
|---|
Probab=95.18 E-value=0.021 Score=62.37 Aligned_cols=63 Identities=11% Similarity=0.202 Sum_probs=49.8
Q ss_pred CEEEEEec----ChhHHHHHHHhhcC--CCEEE-EECCCCCh--hHHHHcCCc----ccCHHHHhc--cCCEEEEecC
Q 007512 198 KTLAVLGF----GKVGSEVARRAKGL--GMHVI-AHDPYAPA--DRARAIGVD----LVSFDEAIA--TADFISLHMP 260 (600)
Q Consensus 198 ktiGIIGl----G~IG~~vA~~l~~~--g~~V~-~~d~~~~~--~~a~~~g~~----~~~l~ell~--~aDvV~l~~P 260 (600)
.+|||||+ |.||+..++.++.. ++++. ++|+.... ..+...|+. +.+++++++ +.|+|++|+|
T Consensus 40 irvgiIG~g~~GG~~g~~h~~~l~~~~~~~~lvav~d~~~~~a~~~a~~~g~~~~~~~~d~~ell~~~~vD~V~I~tp 117 (479)
T 2nvw_A 40 IRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYNPTLKSSLQTIEQLQLKHATGFDSLESFAQYKDIDMIVVSVK 117 (479)
T ss_dssp EEEEEECCCSTTSHHHHTHHHHHHHTTTTEEEEEEECSCHHHHHHHHHHTTCTTCEEESCHHHHHHCTTCSEEEECSC
T ss_pred CEEEEEcccCCCCHHHHHHHHHHHhcCCCeEEEEEEeCCHHHHHHHHHHcCCCcceeeCCHHHHhcCCCCCEEEEcCC
Confidence 58999999 99999999999875 78876 57887522 234556764 458999995 6999999999
|
| >3do5_A HOM, homoserine dehydrogenase; NP_069768.1, putative homoserine dehydrogenase, structural G joint center for structural genomics, JCSG; 2.20A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=95.14 E-value=0.055 Score=56.15 Aligned_cols=106 Identities=17% Similarity=0.180 Sum_probs=66.6
Q ss_pred EEEEEecChhHHHHHHHhhc---------CCCEEEE-ECCCCC------hhH--HH--HcCCccc--CHHHHhc--cCCE
Q 007512 199 TLAVLGFGKVGSEVARRAKG---------LGMHVIA-HDPYAP------ADR--AR--AIGVDLV--SFDEAIA--TADF 254 (600)
Q Consensus 199 tiGIIGlG~IG~~vA~~l~~---------~g~~V~~-~d~~~~------~~~--a~--~~g~~~~--~l~ell~--~aDv 254 (600)
+|||||+|.||+.+++.++. .+.+|.+ +|++.. ... +. ..+..+. ++++++. +.|+
T Consensus 4 rvgIiG~G~VG~~~~~~l~~~~~~l~~~g~~~~lvaV~d~~~~~~~~id~~~~~~~~~~~~~~~~~~d~~~ll~~~~iDv 83 (327)
T 3do5_A 4 KIAIVGFGTVGQGVAELLIRKREEIEKAIGEFKVTAVADSKSSISGDFSLVEALRMKRETGMLRDDAKAIEVVRSADYDV 83 (327)
T ss_dssp EEEEECCSHHHHHHHHHHHHTHHHHHHHHCCEEEEEEECSSCEEESSCCHHHHHHHHHHHSSCSBCCCHHHHHHHSCCSE
T ss_pred EEEEEeccHHHHHHHHHHHhhHHHHHhcCCCEEEEEEEeCChHhccccCHHHHHhhhccCccccCCCCHHHHhcCCCCCE
Confidence 79999999999999999974 5778776 576531 111 11 1122222 8899885 5899
Q ss_pred EEEecCCCccccccccHhHhccCCCceEEEEccCCccc-cHHHHHHhHhcCC
Q 007512 255 ISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVI-DEEALVRALDSGR 305 (600)
Q Consensus 255 V~l~~Pl~~~t~~li~~~~l~~mk~gailvNvarg~iv-de~aL~~aL~~g~ 305 (600)
|+.|+|....+.. .-+-....|+.|.-++-...+.+. ..+.|.++.++..
T Consensus 84 Vv~~tp~~~h~~~-a~~~~~~aL~aGkhVv~~NKkpla~~~~eL~~~A~~~g 134 (327)
T 3do5_A 84 LIEASVTRVDGGE-GVNYIREALKRGKHVVTSNKGPLVAEFHGLMSLAERNG 134 (327)
T ss_dssp EEECCCCC----C-HHHHHHHHHTTTCEEEECCSHHHHHHHHHHHHHHHHTT
T ss_pred EEECCCCcccchh-HHHHHHHHHHCCCeEEecCchhhHHHHHHHHHHHHhhC
Confidence 9999995432111 112234557888888877665554 4566666555543
|
| >4ew6_A D-galactose-1-dehydrogenase protein; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium, two domain; 2.30A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=95.12 E-value=0.023 Score=58.82 Aligned_cols=59 Identities=22% Similarity=0.352 Sum_probs=46.7
Q ss_pred CCEEEEEecChhHH-HHHHHhhcC-CCEEEE-ECCCCChhHHHHcCCc-ccCHHHHhcc---CCEEEEecC
Q 007512 197 GKTLAVLGFGKVGS-EVARRAKGL-GMHVIA-HDPYAPADRARAIGVD-LVSFDEAIAT---ADFISLHMP 260 (600)
Q Consensus 197 gktiGIIGlG~IG~-~vA~~l~~~-g~~V~~-~d~~~~~~~a~~~g~~-~~~l~ell~~---aDvV~l~~P 260 (600)
-.+|||||+|.||+ ..++.++.. +++|.+ +|++.. ..|+. +.++++++++ .|+|++|+|
T Consensus 25 ~~rvgiiG~G~ig~~~~~~~l~~~~~~~lvav~d~~~~-----~~g~~~~~~~~~ll~~~~~vD~V~i~tp 90 (330)
T 4ew6_A 25 PINLAIVGVGKIVRDQHLPSIAKNANFKLVATASRHGT-----VEGVNSYTTIEAMLDAEPSIDAVSLCMP 90 (330)
T ss_dssp CEEEEEECCSHHHHHTHHHHHHHCTTEEEEEEECSSCC-----CTTSEEESSHHHHHHHCTTCCEEEECSC
T ss_pred CceEEEEecCHHHHHHHHHHHHhCCCeEEEEEEeCChh-----hcCCCccCCHHHHHhCCCCCCEEEEeCC
Confidence 35899999999998 788888866 788765 687653 23565 4589999875 999999999
|
| >2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=95.10 E-value=0.06 Score=58.75 Aligned_cols=101 Identities=18% Similarity=0.205 Sum_probs=70.3
Q ss_pred eccCCEEEEEecC----------hhHHHHHHHhhcCCCEEEEECCCCChhHH----HH-c-------CCcc-cCHHHHhc
Q 007512 194 SLVGKTLAVLGFG----------KVGSEVARRAKGLGMHVIAHDPYAPADRA----RA-I-------GVDL-VSFDEAIA 250 (600)
Q Consensus 194 ~l~gktiGIIGlG----------~IG~~vA~~l~~~g~~V~~~d~~~~~~~a----~~-~-------g~~~-~~l~ell~ 250 (600)
.+.|++|+|+|+- .-...+++.|...|.+|.+|||+.+.+.+ .. . .+.+ .++.+.++
T Consensus 332 ~~~~~~v~vlGlafK~~~dd~R~Spa~~i~~~L~~~g~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (481)
T 2o3j_A 332 TVTDKKIAIFGFAFKKNTGDTRESSAIHVIKHLMEEHAKLSVYDPKVQKSQMLNDLASVTSAQDVERLITVESDPYAAAR 411 (481)
T ss_dssp CCTTCEEEEECCSSSTTCCCCTTCHHHHHHHHHHHTTCEEEEECSSSCHHHHHHHHHHHSCHHHHHHHEEEESSHHHHHT
T ss_pred ccCCCeEEEEeeeeCCCCCccccChHHHHHHHHHHCCCEEEEECCCCCchhhHHHHHhhhccccccCceeecCCHHHHHc
Confidence 5899999999983 46778999999999999999999854321 11 1 1233 36788899
Q ss_pred cCCEEEEecCCCccccccccHhH-hccCCCceEEEEccCCccccHHHHH
Q 007512 251 TADFISLHMPLTPATSKVLNDET-FGKMKKGVRIINVARGGVIDEEALV 298 (600)
Q Consensus 251 ~aDvV~l~~Pl~~~t~~li~~~~-l~~mk~gailvNvarg~ivde~aL~ 298 (600)
.||+|++++.-. +-+. ++-+. ...|+...+|+|+ |+ ++|.+.+.
T Consensus 412 ~ad~~vi~t~~~-~f~~-~~~~~~~~~~~~~~~i~D~-r~-~~~~~~~~ 456 (481)
T 2o3j_A 412 GAHAIVVLTEWD-EFVE-LNYSQIHNDMQHPAAIFDG-RL-ILDQKALR 456 (481)
T ss_dssp TCSEEEECSCCG-GGTT-SCHHHHHHHSCSSCEEEES-SS-CSCHHHHH
T ss_pred CCCEEEEcCCcH-Hhhc-cCHHHHHHhcCCCCEEEEC-CC-CCCHHHHH
Confidence 999999999843 3333 34433 3457776688886 44 34655543
|
| >3btv_A Galactose/lactose metabolism regulatory protein GAL80; eukaryotic transcription repressor, acetylation, carbohydrate metabolism; 2.10A {Saccharomyces cerevisiae} PDB: 3bts_A 3v2u_A* 3btu_A | Back alignment and structure |
|---|
Probab=95.10 E-value=0.015 Score=62.69 Aligned_cols=63 Identities=11% Similarity=0.178 Sum_probs=49.8
Q ss_pred CEEEEEec----ChhHHHHHHHhhcC--CCEEE-EECCCCCh--hHHHHcCCc----ccCHHHHhc--cCCEEEEecC
Q 007512 198 KTLAVLGF----GKVGSEVARRAKGL--GMHVI-AHDPYAPA--DRARAIGVD----LVSFDEAIA--TADFISLHMP 260 (600)
Q Consensus 198 ktiGIIGl----G~IG~~vA~~l~~~--g~~V~-~~d~~~~~--~~a~~~g~~----~~~l~ell~--~aDvV~l~~P 260 (600)
.+|||||+ |.||+..++.++.. ++++. ++|++... ..+...|+. +.++++++. +.|+|++|+|
T Consensus 21 irvgiIG~g~~gG~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~g~~~~~~~~~~~~ll~~~~vD~V~i~tp 98 (438)
T 3btv_A 21 IRVGFVGLNAAKGWAIKTHYPAILQLSSQFQITALYSPKIETSIATIQRLKLSNATAFPTLESFASSSTIDMIVIAIQ 98 (438)
T ss_dssp EEEEEESCCTTSSSTTTTHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTCTTCEEESSHHHHHHCSSCSEEEECSC
T ss_pred CEEEEEcccCCCChHHHHHHHHHHhcCCCeEEEEEEeCCHHHHHHHHHHcCCCcceeeCCHHHHhcCCCCCEEEEeCC
Confidence 48999999 99999999999876 78875 57887532 234556764 458999996 6999999999
|
| >1lc0_A Biliverdin reductase A; oxidoreductase, tetrapyrrole, bIle pigment, heme, bilirubin, NADH; 1.20A {Rattus norvegicus} SCOP: c.2.1.3 d.81.1.4 PDB: 1lc3_A* 1gcu_A 2h63_A* | Back alignment and structure |
|---|
Probab=95.09 E-value=0.014 Score=59.31 Aligned_cols=61 Identities=20% Similarity=0.212 Sum_probs=46.5
Q ss_pred CEEEEEecChhHHHHHHHhhc----CCCEEEE-ECCCCChhHHHHcCCcccCHHHHhc--cCCEEEEecCC
Q 007512 198 KTLAVLGFGKVGSEVARRAKG----LGMHVIA-HDPYAPADRARAIGVDLVSFDEAIA--TADFISLHMPL 261 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~----~g~~V~~-~d~~~~~~~a~~~g~~~~~l~ell~--~aDvV~l~~Pl 261 (600)
.+|||||+|.||+..++.+.. -++++.+ +|+... +...|+...+++++++ +.|+|++|+|.
T Consensus 8 ~rvgiIG~G~iG~~~~~~l~~~~~~~~~~lvav~d~~~~---a~~~g~~~~~~~ell~~~~vD~V~i~tp~ 75 (294)
T 1lc0_A 8 FGVVVVGVGRAGSVRLRDLKDPRSAAFLNLIGFVSRREL---GSLDEVRQISLEDALRSQEIDVAYICSES 75 (294)
T ss_dssp EEEEEECCSHHHHHHHHHHTSHHHHTTEEEEEEECSSCC---CEETTEEBCCHHHHHHCSSEEEEEECSCG
T ss_pred ceEEEEEEcHHHHHHHHHHhccccCCCEEEEEEECchHH---HHHcCCCCCCHHHHhcCCCCCEEEEeCCc
Confidence 479999999999999988875 3677764 676531 2234555678999986 68999999993
|
| >1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A | Back alignment and structure |
|---|
Probab=95.09 E-value=0.018 Score=62.30 Aligned_cols=67 Identities=19% Similarity=0.269 Sum_probs=48.7
Q ss_pred cCCEEEEEecChhHHHHHHHhhcCCCEEEEECCCCChhHH--HHcC-C-----ccc---CHHHHhccCCEEEEecCCC
Q 007512 196 VGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPADRA--RAIG-V-----DLV---SFDEAIATADFISLHMPLT 262 (600)
Q Consensus 196 ~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~~~~a--~~~g-~-----~~~---~l~ell~~aDvV~l~~Pl~ 262 (600)
.+++++|+|.|.||+.+++.|...|.+|.++|+....... ...+ + ... +++++++++|+|+.++|..
T Consensus 2 ~~k~VlViGaG~iG~~ia~~L~~~G~~V~v~~R~~~~a~~la~~~~~~~~~~~Dv~d~~~l~~~l~~~DvVIn~a~~~ 79 (450)
T 1ff9_A 2 ATKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLESAKKLSAGVQHSTPISLDVNDDAALDAEVAKHDLVISLIPYT 79 (450)
T ss_dssp CCCEEEEECCSTTHHHHHHHHHTTTCEEEEEESSHHHHHHTTTTCTTEEEEECCTTCHHHHHHHHTTSSEEEECCC--
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCcCEEEEEECCHHHHHHHHHhcCCceEEEeecCCHHHHHHHHcCCcEEEECCccc
Confidence 4789999999999999999999889999999986422111 1111 1 112 3557788999999999964
|
| >2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A* | Back alignment and structure |
|---|
Probab=95.08 E-value=0.041 Score=57.48 Aligned_cols=87 Identities=23% Similarity=0.273 Sum_probs=61.5
Q ss_pred cCCEEEEEecChhHHHHHHHhhcCCC-EEEEECCCC-ChhHHHHcCCcc-c-------CHHHHhc-----cCCEEEEecC
Q 007512 196 VGKTLAVLGFGKVGSEVARRAKGLGM-HVIAHDPYA-PADRARAIGVDL-V-------SFDEAIA-----TADFISLHMP 260 (600)
Q Consensus 196 ~gktiGIIGlG~IG~~vA~~l~~~g~-~V~~~d~~~-~~~~a~~~g~~~-~-------~l~ell~-----~aDvV~l~~P 260 (600)
.|++|.|+|.|.||...++.++.+|. +|++.++.. ..+.++++|+.. + ++.+.+. ..|+|+-++.
T Consensus 190 ~g~~VlV~GaG~vG~~avqla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~v~~~~~~g~D~vid~~g 269 (373)
T 2fzw_A 190 PGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATECINPQDFSKPIQEVLIEMTDGGVDYSFECIG 269 (373)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEECSC
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEeccccccccHHHHHHHHhCCCCCEEEECCC
Confidence 48899999999999999999999998 899999776 456677778642 1 1222222 3788887776
Q ss_pred CCccccccccHhHhccCCCc-eEEEEcc
Q 007512 261 LTPATSKVLNDETFGKMKKG-VRIINVA 287 (600)
Q Consensus 261 l~~~t~~li~~~~l~~mk~g-ailvNva 287 (600)
..+ + -...+..++++ ..++.++
T Consensus 270 ~~~-~----~~~~~~~l~~~~G~iv~~G 292 (373)
T 2fzw_A 270 NVK-V----MRAALEACHKGWGVSVVVG 292 (373)
T ss_dssp CHH-H----HHHHHHTBCTTTCEEEECS
T ss_pred cHH-H----HHHHHHhhccCCcEEEEEe
Confidence 321 1 23456667777 7777775
|
| >2tmg_A Protein (glutamate dehydrogenase); metabolic role, mutant, oxidoreductase; 2.90A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.1 PDB: 1b26_A 1b3b_A | Back alignment and structure |
|---|
Probab=95.08 E-value=0.37 Score=51.53 Aligned_cols=95 Identities=22% Similarity=0.309 Sum_probs=63.4
Q ss_pred cceeccCCEEEEEecChhHHHHHHHhhc-CCCEEEE--------ECCCC-ChhHHH----HcC-------CcccCHHHHh
Q 007512 191 VGVSLVGKTLAVLGFGKVGSEVARRAKG-LGMHVIA--------HDPYA-PADRAR----AIG-------VDLVSFDEAI 249 (600)
Q Consensus 191 ~g~~l~gktiGIIGlG~IG~~vA~~l~~-~g~~V~~--------~d~~~-~~~~a~----~~g-------~~~~~l~ell 249 (600)
.|.++.|+++.|.|+|.+|+..|+.|.. .|.+|++ |||.- +.+... +.| .+.++.++++
T Consensus 203 ~g~~l~g~~vaVqG~GnVG~~~a~~L~e~~GakvVavsD~~G~i~dp~Gld~~~l~~~~~~~g~l~~y~~a~~~~~~eil 282 (415)
T 2tmg_A 203 LGIDPKKATVAVQGFGNVGQFAALLISQELGSKVVAVSDSRGGIYNPEGFDVEELIRYKKEHGTVVTYPKGERITNEELL 282 (415)
T ss_dssp TTCCTTTCEEEEECCSHHHHHHHHHHHHTTCCEEEEEECSSCEEECTTCCCHHHHHHHHHHSSCSTTCSSSEEECHHHHT
T ss_pred cCCCcCCCEEEEECCcHHHHHHHHHHHHhcCCEEEEEEeCCCeEECCCCCCHHHHHHHHHhhCCcccCCCceEcCchhhh
Confidence 3568999999999999999999999998 9999984 34422 222111 112 1333455655
Q ss_pred -ccCCEEEEecCCCccccccccHhHhccCCCceEEEEccCCcc
Q 007512 250 -ATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGV 291 (600)
Q Consensus 250 -~~aDvV~l~~Pl~~~t~~li~~~~l~~mk~gailvNvarg~i 291 (600)
..||+++-|.+- +.++.+....++ -.+|+-.+-+++
T Consensus 283 ~~~~DIliP~A~~-----n~i~~~~a~~l~-ak~V~EgAN~p~ 319 (415)
T 2tmg_A 283 ELDVDILVPAALE-----GAIHAGNAERIK-AKAVVEGANGPT 319 (415)
T ss_dssp TCSCSEEEECSST-----TSBCHHHHTTCC-CSEEECCSSSCB
T ss_pred cCCCcEEEecCCc-----CccCcccHHHcC-CeEEEeCCCccc
Confidence 478988888763 346666666663 345666666665
|
| >2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase; HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB: 2ixb_A* | Back alignment and structure |
|---|
Probab=95.07 E-value=0.03 Score=60.33 Aligned_cols=64 Identities=16% Similarity=0.254 Sum_probs=47.9
Q ss_pred CEEEEEecChhHHHHHHHhhcC-CCEEE-EECCCCCh-hHH-H---HcCC---c-cc----CHHHHhc--cCCEEEEecC
Q 007512 198 KTLAVLGFGKVGSEVARRAKGL-GMHVI-AHDPYAPA-DRA-R---AIGV---D-LV----SFDEAIA--TADFISLHMP 260 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~-g~~V~-~~d~~~~~-~~a-~---~~g~---~-~~----~l~ell~--~aDvV~l~~P 260 (600)
.+|||||+|.||+..++.++.. ++++. ++|++... +.+ . +.|+ . +. +++++++ +.|+|++|+|
T Consensus 21 ~rvgiIG~G~~g~~h~~~l~~~~~~~lvav~d~~~~~~~~~a~~~~~~g~~~~~~~~~~~~~~~~ll~~~~vD~V~i~tp 100 (444)
T 2ixa_A 21 VRIAFIAVGLRGQTHVENMARRDDVEIVAFADPDPYMVGRAQEILKKNGKKPAKVFGNGNDDYKNMLKDKNIDAVFVSSP 100 (444)
T ss_dssp EEEEEECCSHHHHHHHHHHHTCTTEEEEEEECSCHHHHHHHHHHHHHTTCCCCEEECSSTTTHHHHTTCTTCCEEEECCC
T ss_pred ceEEEEecCHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHHHHHhcCCCCCceeccCCCCHHHHhcCCCCCEEEEcCC
Confidence 4899999999999999999876 78875 57887532 221 1 2353 3 34 8999997 5899999999
Q ss_pred C
Q 007512 261 L 261 (600)
Q Consensus 261 l 261 (600)
.
T Consensus 101 ~ 101 (444)
T 2ixa_A 101 W 101 (444)
T ss_dssp G
T ss_pred c
Confidence 3
|
| >2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A* | Back alignment and structure |
|---|
Probab=95.06 E-value=0.025 Score=58.88 Aligned_cols=88 Identities=22% Similarity=0.303 Sum_probs=62.9
Q ss_pred cCCEEEEEecChhHHHHHHHhhcCCCEEEEECCCCC-hhHHH-HcCCccc----C---HHHHhccCCEEEEecCCCcccc
Q 007512 196 VGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAP-ADRAR-AIGVDLV----S---FDEAIATADFISLHMPLTPATS 266 (600)
Q Consensus 196 ~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~-~~~a~-~~g~~~~----~---l~ell~~aDvV~l~~Pl~~~t~ 266 (600)
.|.+|.|+|.|.||...++.++.+|.+|++.++... .+.+. ++|...+ + +.++....|+|+-++....
T Consensus 180 ~g~~VlV~GaG~vG~~a~qlak~~Ga~Vi~~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~g~D~vid~~g~~~--- 256 (357)
T 2cf5_A 180 PGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSNKKREEALQDLGADDYVIGSDQAKMSELADSLDYVIDTVPVHH--- 256 (357)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSTTHHHHHHTTSCCSCEEETTCHHHHHHSTTTEEEEEECCCSCC---
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHcCCceeeccccHHHHHHhcCCCCEEEECCCChH---
Confidence 588999999999999999999999999999998764 34455 6776422 2 2223345788888876322
Q ss_pred ccccHhHhccCCCceEEEEccC
Q 007512 267 KVLNDETFGKMKKGVRIINVAR 288 (600)
Q Consensus 267 ~li~~~~l~~mk~gailvNvar 288 (600)
.-...+..++++..++.++.
T Consensus 257 --~~~~~~~~l~~~G~iv~~G~ 276 (357)
T 2cf5_A 257 --ALEPYLSLLKLDGKLILMGV 276 (357)
T ss_dssp --CSHHHHTTEEEEEEEEECSC
T ss_pred --HHHHHHHHhccCCEEEEeCC
Confidence 12345666788888888763
|
| >3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* | Back alignment and structure |
|---|
Probab=95.04 E-value=0.02 Score=59.07 Aligned_cols=87 Identities=18% Similarity=0.260 Sum_probs=60.2
Q ss_pred cCCEEEEEecChhHHHHHHHhhcCCCEEEEECCCC-ChhHHHHcCCccc------CHHHHh----ccCCEEEEecCCCcc
Q 007512 196 VGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYA-PADRARAIGVDLV------SFDEAI----ATADFISLHMPLTPA 264 (600)
Q Consensus 196 ~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~-~~~~a~~~g~~~~------~l~ell----~~aDvV~l~~Pl~~~ 264 (600)
.|++|.|+|.|.||...++.++.+|.+|++.|+.. ..+.++++|...+ ++.+.+ ...|+|+.++...+
T Consensus 166 ~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~~~g~~d~vid~~g~~~- 244 (340)
T 3s2e_A 166 PGQWVVISGIGGLGHVAVQYARAMGLRVAAVDIDDAKLNLARRLGAEVAVNARDTDPAAWLQKEIGGAHGVLVTAVSPK- 244 (340)
T ss_dssp TTSEEEEECCSTTHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHSSEEEEEESSCCHH-
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCCEEEeCCCcCHHHHHHHhCCCCCEEEEeCCCHH-
Confidence 47899999999999999999999999999998866 4566777776421 222222 24677777665221
Q ss_pred ccccccHhHhccCCCceEEEEcc
Q 007512 265 TSKVLNDETFGKMKKGVRIINVA 287 (600)
Q Consensus 265 t~~li~~~~l~~mk~gailvNva 287 (600)
.-...+..++++..++.++
T Consensus 245 ----~~~~~~~~l~~~G~iv~~G 263 (340)
T 3s2e_A 245 ----AFSQAIGMVRRGGTIALNG 263 (340)
T ss_dssp ----HHHHHHHHEEEEEEEEECS
T ss_pred ----HHHHHHHHhccCCEEEEeC
Confidence 1134455577777777765
|
| >1u8f_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase, liver; rossmann fold, oxidoreductase, mammalian GAPDH; HET: NAD; 1.75A {Homo sapiens} SCOP: c.2.1.3 d.81.1.1 PDB: 1znq_O* 1j0x_O* 3gpd_R* 1dss_G* 1crw_G* 1szj_G* 1ihx_A* 1ihy_A* 1gpd_G* 4gpd_1 | Back alignment and structure |
|---|
Probab=95.03 E-value=0.025 Score=58.95 Aligned_cols=87 Identities=18% Similarity=0.321 Sum_probs=53.8
Q ss_pred CEEEEEecChhHHHHHHHhhcC-CCEEEEE-CCCCChhHHH---Hc----C-------------------Ccc---cCHH
Q 007512 198 KTLAVLGFGKVGSEVARRAKGL-GMHVIAH-DPYAPADRAR---AI----G-------------------VDL---VSFD 246 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~-g~~V~~~-d~~~~~~~a~---~~----g-------------------~~~---~~l~ 246 (600)
.+|||+|+|+||+.+++.+... +++|.+. |+....+... +. | +.. .+++
T Consensus 4 ikVgI~G~G~iGr~~~R~l~~~~~vevvaI~d~~~~~~~~a~l~~~ds~~g~~~~~~~~~~~~l~v~g~~i~v~~~~d~~ 83 (335)
T 1u8f_O 4 VKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLNYMVYMFQYDSTHGKFHGTVKAENGKLVINGNPITIFQERDPS 83 (335)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCSSEEEEEECSSSCHHHHHHHHHCCTTTCSCSSCEEEETTEEEETTEEEEEECCSSGG
T ss_pred eEEEEEccCHHHHHHHHHHHcCCCcEEEEecCCCCCHHHHHHHhhcccccCCCCCceEEcCCeEEECCeEEEEEecCCHH
Confidence 4899999999999999998754 6898775 5423332211 10 0 000 1445
Q ss_pred HH-h--ccCCEEEEecCCCccccccccHhHhccCCCceEEEEccCC
Q 007512 247 EA-I--ATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARG 289 (600)
Q Consensus 247 el-l--~~aDvV~l~~Pl~~~t~~li~~~~l~~mk~gailvNvarg 289 (600)
++ + ..+|+|+.|+|... ++ +..-..++.|+..|+++-.
T Consensus 84 ~l~~~~~~vDvV~eatg~~~-~~----e~a~~~l~aGak~V~iSap 124 (335)
T 1u8f_O 84 KIKWGDAGAEYVVESTGVFT-TM----EKAGAHLQGGAKRVIISAP 124 (335)
T ss_dssp GCCTTTTTCCEEEECSSSCC-SH----HHHGGGGGGTCSEEEESSC
T ss_pred HCccccCCCCEEEECCCchh-hH----HHHHHHHhCCCeEEEeccC
Confidence 55 2 57899999999543 22 2222346778777777654
|
| >3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=95.03 E-value=0.014 Score=59.87 Aligned_cols=51 Identities=16% Similarity=0.091 Sum_probs=44.0
Q ss_pred cEEEEEecCCCCChhhHHhhhhcCCccccceEeeeecCCCcEEEEEEeCCC
Q 007512 527 SIILCRQVDQPGMIGTVGSILGSENVNVSFMSVGRVAPRKHAVMAIGVDEQ 577 (600)
Q Consensus 527 ~~Liv~~~D~pG~Ia~V~~iL~~~~INIa~m~v~R~~~g~~al~~i~~D~~ 577 (600)
+.|.+..+|+||+|+.|++.|+++|+||..++..-....+.-+|+++++-+
T Consensus 23 ~iLtv~c~DrpGIVa~VS~~La~~g~NI~d~~q~~d~~~g~FfMr~~~~~~ 73 (302)
T 3o1l_A 23 FRLVIACPDRVGIVAKVSNFLASHNGWITEASHHSDNLSGWFFMRHEIRAD 73 (302)
T ss_dssp EEEEEEEECCTTHHHHHHHHHHHTTCCEEEEEEEEETTTTEEEEEEEEEGG
T ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCCEEEeeEEecCCCCeEEEEEEEecC
Confidence 466777899999999999999999999999998865567788899988753
|
| >1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A* | Back alignment and structure |
|---|
Probab=94.99 E-value=0.022 Score=61.77 Aligned_cols=68 Identities=13% Similarity=0.021 Sum_probs=48.6
Q ss_pred ceeccCCEEEEEecChhHHHHHHHhhcCCCEEEEECCCCChhHHH---HcCCccc--C-HHHHhccCCEEEEec
Q 007512 192 GVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPADRAR---AIGVDLV--S-FDEAIATADFISLHM 259 (600)
Q Consensus 192 g~~l~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~~~~a~---~~g~~~~--~-l~ell~~aDvV~l~~ 259 (600)
...+.|+++.|||.|.+|.+.++.|...|.+|.++||....+... +.++.+. . -++.+..+|+|+.+.
T Consensus 7 ~~~l~~~~vlVvGgG~va~~k~~~L~~~ga~V~vi~~~~~~~~~~l~~~~~i~~~~~~~~~~~l~~~~lVi~at 80 (457)
T 1pjq_A 7 FCQLRDRDCLIVGGGDVAERKARLLLEAGARLTVNALTFIPQFTVWANEGMLTLVEGPFDETLLDSCWLAIAAT 80 (457)
T ss_dssp EECCBTCEEEEECCSHHHHHHHHHHHHTTBEEEEEESSCCHHHHHHHTTTSCEEEESSCCGGGGTTCSEEEECC
T ss_pred EEECCCCEEEEECCCHHHHHHHHHHHhCcCEEEEEcCCCCHHHHHHHhcCCEEEEECCCCccccCCccEEEEcC
Confidence 357899999999999999999999999999999999976543221 1233321 1 123456677776643
|
| >1nvm_B Acetaldehyde dehydrogenase (acylating), 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=94.92 E-value=0.037 Score=56.98 Aligned_cols=63 Identities=21% Similarity=0.282 Sum_probs=47.0
Q ss_pred CEEEEEecChhHHHHHHHhhc-C-CCEEE-EECCCCC---hhHHHHcCCcc--cCHHHHh-----ccCCEEEEecC
Q 007512 198 KTLAVLGFGKVGSEVARRAKG-L-GMHVI-AHDPYAP---ADRARAIGVDL--VSFDEAI-----ATADFISLHMP 260 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~-~-g~~V~-~~d~~~~---~~~a~~~g~~~--~~l~ell-----~~aDvV~l~~P 260 (600)
.+|||||+|.||+.+++.+.. + ++++. ++|++.. ...+.+.|+.. .+.++++ .+.|+|+.|+|
T Consensus 5 irVaIIG~G~iG~~~~~~l~~~~~~~elvav~d~~~~~~~~~~a~~~g~~~~~~~~e~ll~~~~~~~iDvV~~atp 80 (312)
T 1nvm_B 5 LKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARAQRMGVTTTYAGVEGLIKLPEFADIDFVFDATS 80 (312)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHHHHHHHTTCCEESSHHHHHHHSGGGGGEEEEEECSC
T ss_pred CEEEEEcCcHHHHHHHHHHHhhCcCeEEEEEEeCChhhhHHHHHHHcCCCcccCCHHHHHhccCCCCCcEEEECCC
Confidence 489999999999999999954 4 67765 4687753 24456777752 3567775 45899999999
|
| >2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria} | Back alignment and structure |
|---|
Probab=94.88 E-value=0.018 Score=55.13 Aligned_cols=51 Identities=14% Similarity=0.137 Sum_probs=40.7
Q ss_pred ccEEEEEecCCCCChhhHHhhhhcCCccccceEeeeec----CCCcEEEEEEeCC
Q 007512 526 GSIILCRQVDQPGMIGTVGSILGSENVNVSFMSVGRVA----PRKHAVMAIGVDE 576 (600)
Q Consensus 526 ~~~Liv~~~D~pG~Ia~V~~iL~~~~INIa~m~v~R~~----~g~~al~~i~~D~ 576 (600)
.+.|-+..+|+||+++.|+++|+++|+||..++..-.. ..+.-.|.+.++-
T Consensus 93 ~~iltv~g~DrpGiva~Vt~~La~~g~nI~~~~~~t~~~~~~~~~~F~m~~~~~~ 147 (195)
T 2nyi_A 93 EYELYVEGPDSEGIVEAVTAVLAKKGANIVELETETLPAPFAGFTLFRMGSRVAF 147 (195)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEEECSSTTCEEEEEEEEEEE
T ss_pred EEEEEEEeCCCcCHHHHHHHHHHHcCCCEEEceeeecccccCCCCeEEEEEEEEc
Confidence 45677778999999999999999999999999887544 3344677777764
|
| >4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A* | Back alignment and structure |
|---|
Probab=94.88 E-value=0.026 Score=59.13 Aligned_cols=87 Identities=25% Similarity=0.270 Sum_probs=60.3
Q ss_pred cCCEEEEEecChhHHHHHHHhhcCCC-EEEEECCCC-ChhHHHHcCCccc------CHHHHhc--------cCCEEEEec
Q 007512 196 VGKTLAVLGFGKVGSEVARRAKGLGM-HVIAHDPYA-PADRARAIGVDLV------SFDEAIA--------TADFISLHM 259 (600)
Q Consensus 196 ~gktiGIIGlG~IG~~vA~~l~~~g~-~V~~~d~~~-~~~~a~~~g~~~~------~l~ell~--------~aDvV~l~~ 259 (600)
.|++|.|+|.|.+|...++.++.+|. +|++.|+.. ..+.++++|+..+ ++.+.+. ..|+|+-++
T Consensus 182 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~i~~~~~~~~gg~Dvvid~~ 261 (370)
T 4ej6_A 182 AGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEEVGATATVDPSAGDVVEAIAGPVGLVPGGVDVVIECA 261 (370)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTCSEEECTTSSCHHHHHHSTTSSSTTCEEEEEECS
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCCEEECCCCcCHHHHHHhhhhccCCCCCEEEECC
Confidence 47899999999999999999999999 999998876 4456777787421 2333332 367777766
Q ss_pred CCCccccccccHhHhccCCCceEEEEcc
Q 007512 260 PLTPATSKVLNDETFGKMKKGVRIINVA 287 (600)
Q Consensus 260 Pl~~~t~~li~~~~l~~mk~gailvNva 287 (600)
...+ + -...+..++++..++.++
T Consensus 262 G~~~-~----~~~~~~~l~~~G~vv~~G 284 (370)
T 4ej6_A 262 GVAE-T----VKQSTRLAKAGGTVVILG 284 (370)
T ss_dssp CCHH-H----HHHHHHHEEEEEEEEECS
T ss_pred CCHH-H----HHHHHHHhccCCEEEEEe
Confidence 5211 1 133455577777777765
|
| >4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ... | Back alignment and structure |
|---|
Probab=94.87 E-value=0.033 Score=57.90 Aligned_cols=94 Identities=12% Similarity=0.156 Sum_probs=59.9
Q ss_pred eccCCEEEEEecChhHHHHHHHhhcCCC--EEEEECCCCChhHH--H--HcC-----C-c---ccCHHHHhccCCEEEEe
Q 007512 194 SLVGKTLAVLGFGKVGSEVARRAKGLGM--HVIAHDPYAPADRA--R--AIG-----V-D---LVSFDEAIATADFISLH 258 (600)
Q Consensus 194 ~l~gktiGIIGlG~IG~~vA~~l~~~g~--~V~~~d~~~~~~~a--~--~~g-----~-~---~~~l~ell~~aDvV~l~ 258 (600)
....++|+|||.|.||..+|..+...|. ++..||........ . +.. . . ..+.+ .+++||+|+++
T Consensus 16 ~~~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~~~d~~-~~~~aDiVvi~ 94 (331)
T 4aj2_A 16 QVPQNKITVVGVGAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQHGSLFLKTPKIVSSKDYS-VTANSKLVIIT 94 (331)
T ss_dssp -CCSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCSCCEEEECSSGG-GGTTEEEEEEC
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHhCCCCceEEEEeCChHHHHHHHHhhhhhhhccCCCeEEEcCCHH-HhCCCCEEEEc
Confidence 4567899999999999999999876665 99999986422111 1 111 0 1 12444 58999999998
Q ss_pred cCCCc---cccc-ccc--H-------hHhccCCCceEEEEccC
Q 007512 259 MPLTP---ATSK-VLN--D-------ETFGKMKKGVRIINVAR 288 (600)
Q Consensus 259 ~Pl~~---~t~~-li~--~-------~~l~~mk~gailvNvar 288 (600)
.-... .|+. ++. . +.+....|++++++++-
T Consensus 95 aG~~~kpG~tR~dL~~~N~~I~~~i~~~i~~~~p~a~vlvvtN 137 (331)
T 4aj2_A 95 AGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPQCKLLIVSN 137 (331)
T ss_dssp CSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECSS
T ss_pred cCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 75322 1221 221 1 12333578999999963
|
| >3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=94.87 E-value=0.043 Score=58.19 Aligned_cols=89 Identities=24% Similarity=0.291 Sum_probs=61.2
Q ss_pred cCCEEEEEecChhHHHHHHHhhcCCC-EEEEECCCC-ChhHHHHcCCccc------CHHHHh------ccCCEEEEecCC
Q 007512 196 VGKTLAVLGFGKVGSEVARRAKGLGM-HVIAHDPYA-PADRARAIGVDLV------SFDEAI------ATADFISLHMPL 261 (600)
Q Consensus 196 ~gktiGIIGlG~IG~~vA~~l~~~g~-~V~~~d~~~-~~~~a~~~g~~~~------~l~ell------~~aDvV~l~~Pl 261 (600)
.|.+|.|+|.|.+|...++.++.+|. +|++.|... ..+.++++|...+ ++.+.+ ...|+|+-++..
T Consensus 213 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~i~~~t~g~g~D~vid~~g~ 292 (404)
T 3ip1_A 213 PGDNVVILGGGPIGLAAVAILKHAGASKVILSEPSEVRRNLAKELGADHVIDPTKENFVEAVLDYTNGLGAKLFLEATGV 292 (404)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTCSEEECTTTSCHHHHHHHHTTTCCCSEEEECSSC
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCCEEEcCCCCCHHHHHHHHhCCCCCCEEEECCCC
Confidence 58899999999999999999999999 999999776 4566778886421 222221 147888887763
Q ss_pred CccccccccHhHhccC----CCceEEEEccC
Q 007512 262 TPATSKVLNDETFGKM----KKGVRIINVAR 288 (600)
Q Consensus 262 ~~~t~~li~~~~l~~m----k~gailvNvar 288 (600)
...+. ...+..+ +++..++.++-
T Consensus 293 ~~~~~----~~~~~~l~~~~~~~G~iv~~G~ 319 (404)
T 3ip1_A 293 PQLVW----PQIEEVIWRARGINATVAIVAR 319 (404)
T ss_dssp HHHHH----HHHHHHHHHCSCCCCEEEECSC
T ss_pred cHHHH----HHHHHHHHhccCCCcEEEEeCC
Confidence 31111 2223334 78888887763
|
| >1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A | Back alignment and structure |
|---|
Probab=94.86 E-value=0.044 Score=56.99 Aligned_cols=88 Identities=24% Similarity=0.291 Sum_probs=62.4
Q ss_pred cCCEEEEEecChhHHHHHHHhhcCCC-EEEEECCCC-ChhHHHHcCCccc---C---HHH----Hh----ccCCEEEEec
Q 007512 196 VGKTLAVLGFGKVGSEVARRAKGLGM-HVIAHDPYA-PADRARAIGVDLV---S---FDE----AI----ATADFISLHM 259 (600)
Q Consensus 196 ~gktiGIIGlG~IG~~vA~~l~~~g~-~V~~~d~~~-~~~~a~~~g~~~~---~---l~e----ll----~~aDvV~l~~ 259 (600)
.|.+|.|+|.|.+|...++.++.+|. +|++.|+.. ..+.++++|...+ + -++ +. ...|+|+-++
T Consensus 171 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~i~~~~~~g~D~vid~~ 250 (356)
T 1pl8_A 171 LGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQISKESPQEIARKVEGQLGCKPEVTIECT 250 (356)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHHTSCCSEEEECS
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEEcCcccccchHHHHHHHHhCCCCCEEEECC
Confidence 47899999999999999999999999 999998765 3466777887421 1 111 11 2478888877
Q ss_pred CCCccccccccHhHhccCCCceEEEEccC
Q 007512 260 PLTPATSKVLNDETFGKMKKGVRIINVAR 288 (600)
Q Consensus 260 Pl~~~t~~li~~~~l~~mk~gailvNvar 288 (600)
.... + -...+..++++..++.++-
T Consensus 251 g~~~-~----~~~~~~~l~~~G~iv~~G~ 274 (356)
T 1pl8_A 251 GAEA-S----IQAGIYATRSGGTLVLVGL 274 (356)
T ss_dssp CCHH-H----HHHHHHHSCTTCEEEECSC
T ss_pred CChH-H----HHHHHHHhcCCCEEEEEec
Confidence 6321 1 1345666888888888764
|
| >1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1 | Back alignment and structure |
|---|
Probab=94.84 E-value=0.0077 Score=61.04 Aligned_cols=40 Identities=20% Similarity=0.225 Sum_probs=36.7
Q ss_pred ceeccCCEEEEEecChhHHHHHHHhhcCCCEEEEECCCCC
Q 007512 192 GVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAP 231 (600)
Q Consensus 192 g~~l~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~ 231 (600)
...+.|++|.|||.|.+|.+.++.|...|++|.++||...
T Consensus 8 ~~~l~~k~VLVVGgG~va~rka~~Ll~~Ga~VtViap~~~ 47 (274)
T 1kyq_A 8 AHQLKDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPDLH 47 (274)
T ss_dssp EECCTTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEEEC
T ss_pred EEEcCCCEEEEECCcHHHHHHHHHHHhCCCEEEEEcCCCC
Confidence 4578999999999999999999999999999999998653
|
| >1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A* | Back alignment and structure |
|---|
Probab=94.80 E-value=0.057 Score=55.57 Aligned_cols=95 Identities=14% Similarity=0.159 Sum_probs=61.2
Q ss_pred CEEEEEec-ChhHHHHHHHhhcCC--CEEEEECCCCChhHHHHcC-------Ccc----cCHHHHhccCCEEEEecCCCc
Q 007512 198 KTLAVLGF-GKVGSEVARRAKGLG--MHVIAHDPYAPADRARAIG-------VDL----VSFDEAIATADFISLHMPLTP 263 (600)
Q Consensus 198 ktiGIIGl-G~IG~~vA~~l~~~g--~~V~~~d~~~~~~~a~~~g-------~~~----~~l~ell~~aDvV~l~~Pl~~ 263 (600)
++|+|||. |.+|..++..|...| .+|..+|.......+.++. +.. .++++.++.||+|+++.+...
T Consensus 1 mKI~IiGa~G~VG~~la~~L~~~~~~~ev~L~Di~~~~~~a~dL~~~~~~~~l~~~~~t~d~~~a~~~aDvVvi~ag~~~ 80 (314)
T 1mld_A 1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQLPDCLKGCDVVVIPAGVPR 80 (314)
T ss_dssp CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHHHHHHHHTTSSSSCEEEEEESGGGHHHHHTTCSEEEECCSCCC
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCcEEEEEeCCccHHHHHHHhccCcCceEEEecCCCCHHHHhCCCCEEEECCCcCC
Confidence 37999998 999999999998666 6899999875222222221 111 257788999999999986432
Q ss_pred cccccc-------cHh-------HhccCCCceEEEEccCCccccHH
Q 007512 264 ATSKVL-------NDE-------TFGKMKKGVRIINVARGGVIDEE 295 (600)
Q Consensus 264 ~t~~li-------~~~-------~l~~mk~gailvNvarg~ivde~ 295 (600)
..+.- |.. .+....|+++++++ ...+|.-
T Consensus 81 -~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~--sNPv~~~ 123 (314)
T 1mld_A 81 -KPGMTRDDLFNTNATIVATLTAACAQHCPDAMICII--SNPVNST 123 (314)
T ss_dssp -CTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEEC--SSCHHHH
T ss_pred -CCCCcHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEE--CCCcchh
Confidence 11110 111 12223578899997 4455643
|
| >3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A* | Back alignment and structure |
|---|
Probab=94.80 E-value=0.069 Score=55.63 Aligned_cols=62 Identities=18% Similarity=0.300 Sum_probs=44.7
Q ss_pred hHHHHHHHHHHHHHHHhchHHHHHHHHcCccccccccc-eeccCCEEEEEecChhHHHHHHHhhcCCC-EEEEECCC
Q 007512 155 TVAAAEHGIALLAAMARNVAQADASVKAGKWQRNKYVG-VSLVGKTLAVLGFGKVGSEVARRAKGLGM-HVIAHDPY 229 (600)
Q Consensus 155 ~~~vAE~~l~lll~~~R~i~~~~~~~~~g~W~~~~~~g-~~l~gktiGIIGlG~IG~~vA~~l~~~g~-~V~~~d~~ 229 (600)
..-.||.++-|=|-+.| |.-....| ..|++++|.|||+|-+|..+|+.|...|. ++..+|..
T Consensus 4 p~~~~~~~~~lnl~lm~-------------wRll~~~g~~kL~~~~VlIvGaGGlGs~va~~La~aGVg~ItlvD~D 67 (340)
T 3rui_A 4 PLKIADQSVDLNLKLMK-------------WRILPDLNLDIIKNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNG 67 (340)
T ss_dssp HHHHHHHHHHHHHHHHH-------------HHTCTTCCHHHHHTCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred HHHHHHHHHHHHHHHHH-------------HhhcchhhHHHHhCCEEEEECCCHHHHHHHHHHHHcCCCEEEEecCC
Confidence 44567776666555444 43211122 46899999999999999999999998886 78888764
|
| >1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D | Back alignment and structure |
|---|
Probab=94.79 E-value=0.028 Score=56.96 Aligned_cols=85 Identities=19% Similarity=0.315 Sum_probs=58.5
Q ss_pred cCCEEEEEec-ChhHHHHHHHhhcCCCEEEEECCCC-ChhHHHHcCCccc-C------HHHHhccCCEEEEecCCCcccc
Q 007512 196 VGKTLAVLGF-GKVGSEVARRAKGLGMHVIAHDPYA-PADRARAIGVDLV-S------FDEAIATADFISLHMPLTPATS 266 (600)
Q Consensus 196 ~gktiGIIGl-G~IG~~vA~~l~~~g~~V~~~d~~~-~~~~a~~~g~~~~-~------l~ell~~aDvV~l~~Pl~~~t~ 266 (600)
.|+++.|+|. |.+|...++.++..|++|++.+++. ..+.+++.|...+ + +.+.+..+|+|+- +.. +
T Consensus 125 ~g~~vlV~Ga~G~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ga~~~~~~~~~~~~~~~~~~~d~vid-~g~-~--- 199 (302)
T 1iz0_A 125 PGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLALGAEEAATYAEVPERAKAWGGLDLVLE-VRG-K--- 199 (302)
T ss_dssp TTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHHTTCSEEEEGGGHHHHHHHTTSEEEEEE-CSC-T---
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcCCCEEEECCcchhHHHHhcCceEEEE-CCH-H---
Confidence 4789999998 9999999999999999999998865 3455667776421 2 1122345777776 653 1
Q ss_pred ccccHhHhccCCCceEEEEcc
Q 007512 267 KVLNDETFGKMKKGVRIINVA 287 (600)
Q Consensus 267 ~li~~~~l~~mk~gailvNva 287 (600)
.-...+..|+++..++.++
T Consensus 200 --~~~~~~~~l~~~G~~v~~g 218 (302)
T 1iz0_A 200 --EVEESLGLLAHGGRLVYIG 218 (302)
T ss_dssp --THHHHHTTEEEEEEEEEC-
T ss_pred --HHHHHHHhhccCCEEEEEe
Confidence 1244566677777777665
|
| >1oi7_A Succinyl-COA synthetase alpha chain; SCS, ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.23A {Thermus thermophilus} SCOP: c.2.1.8 c.23.4.1 | Back alignment and structure |
|---|
Probab=94.77 E-value=0.024 Score=57.74 Aligned_cols=101 Identities=20% Similarity=0.327 Sum_probs=64.9
Q ss_pred CCEEEEEec-ChhHHHHHHHhhcCCCEEE-EECCCCChhHHHHcCCccc-CHHHHhc--cCCEEEEecCCCccccccccH
Q 007512 197 GKTLAVLGF-GKVGSEVARRAKGLGMHVI-AHDPYAPADRARAIGVDLV-SFDEAIA--TADFISLHMPLTPATSKVLND 271 (600)
Q Consensus 197 gktiGIIGl-G~IG~~vA~~l~~~g~~V~-~~d~~~~~~~a~~~g~~~~-~l~ell~--~aDvV~l~~Pl~~~t~~li~~ 271 (600)
.++|.|+|. |++|+.+++.++..|++++ ..+|..... ...|+... +++++.. .+|++++++| .+.+...+.+
T Consensus 7 ~~~VaVvGasG~~G~~~~~~l~~~g~~~v~~VnP~~~g~--~i~G~~vy~sl~el~~~~~~Dv~Ii~vp-~~~~~~~~~e 83 (288)
T 1oi7_A 7 ETRVLVQGITGREGQFHTKQMLTYGTKIVAGVTPGKGGM--EVLGVPVYDTVKEAVAHHEVDASIIFVP-APAAADAALE 83 (288)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECTTCTTC--EETTEEEESSHHHHHHHSCCSEEEECCC-HHHHHHHHHH
T ss_pred CCEEEEECCCCCHHHHHHHHHHHcCCeEEEEECCCCCCc--eECCEEeeCCHHHHhhcCCCCEEEEecC-HHHHHHHHHH
Confidence 468999999 9999999999998899854 677764211 12466544 7999988 8999999999 3333433332
Q ss_pred hHhccCCCceE-EEEccCCcc-ccHHHHHHhHhcC
Q 007512 272 ETFGKMKKGVR-IINVARGGV-IDEEALVRALDSG 304 (600)
Q Consensus 272 ~~l~~mk~gai-lvNvarg~i-vde~aL~~aL~~g 304 (600)
- . +.|.- +|..+.|=- .+++.+.++.++.
T Consensus 84 a-~---~~Gi~~vVi~t~G~~~~~~~~l~~~a~~~ 114 (288)
T 1oi7_A 84 A-A---HAGIPLIVLITEGIPTLDMVRAVEEIKAL 114 (288)
T ss_dssp H-H---HTTCSEEEECCSCCCHHHHHHHHHHHHHH
T ss_pred H-H---HCCCCEEEEECCCCCHHHHHHHHHHHHHc
Confidence 2 2 22322 444444421 2345666666554
|
| >3e5r_O PP38, glyceraldehyde-3-phosphate dehydrogenase, cytosolic; GAPDH, RICE, oxidoreductase, cytoplasm, glycolysis, NAD; HET: NAD; 2.30A {Oryza sativa subsp} PDB: 3e6a_O | Back alignment and structure |
|---|
Probab=94.68 E-value=0.041 Score=57.31 Aligned_cols=31 Identities=35% Similarity=0.607 Sum_probs=26.3
Q ss_pred CEEEEEecChhHHHHHHHhhcC-CCEEEEE-CC
Q 007512 198 KTLAVLGFGKVGSEVARRAKGL-GMHVIAH-DP 228 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~-g~~V~~~-d~ 228 (600)
.+|||+|+|+||+.+++.+... +++|.+. |+
T Consensus 4 ikVgI~G~GrIGr~l~R~l~~~p~vevvaI~d~ 36 (337)
T 3e5r_O 4 IKIGINGFGRIGRLVARVALQSEDVELVAVNDP 36 (337)
T ss_dssp EEEEEECCSHHHHHHHHHHHTCSSEEEEEEECS
T ss_pred eEEEEECcCHHHHHHHHHHhCCCCeEEEEEECC
Confidence 3899999999999999999866 7888775 54
|
| >3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=94.65 E-value=0.036 Score=56.52 Aligned_cols=52 Identities=15% Similarity=0.176 Sum_probs=45.1
Q ss_pred ccEEEEEecCCCCChhhHHhhhhcCCccccceEeeeecCCCcEEEEEEeCCC
Q 007512 526 GSIILCRQVDQPGMIGTVGSILGSENVNVSFMSVGRVAPRKHAVMAIGVDEQ 577 (600)
Q Consensus 526 ~~~Liv~~~D~pG~Ia~V~~iL~~~~INIa~m~v~R~~~g~~al~~i~~D~~ 577 (600)
.+.|.+..+|+||+|+.|++.|+++|+||..++.......+.-+|+++++.+
T Consensus 7 ~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~ 58 (287)
T 3nrb_A 7 QYVLSLACQDAPGIVSEVSTFLFNNGANIVEAEQFNDEDSSKFFMRVSVEIP 58 (287)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEEEECC
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHCCCCEEeeeeeecCCCCeEEEEEEEEcC
Confidence 3567788999999999999999999999999998766677888899988764
|
| >3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A | Back alignment and structure |
|---|
Probab=94.64 E-value=0.03 Score=58.10 Aligned_cols=87 Identities=25% Similarity=0.266 Sum_probs=57.5
Q ss_pred cCCEEEEEecChhHHHHHHHhhcCCC-EEEEECCCC-ChhHHHHcCCccc------CHHHHh----c--cCCEEEEecCC
Q 007512 196 VGKTLAVLGFGKVGSEVARRAKGLGM-HVIAHDPYA-PADRARAIGVDLV------SFDEAI----A--TADFISLHMPL 261 (600)
Q Consensus 196 ~gktiGIIGlG~IG~~vA~~l~~~g~-~V~~~d~~~-~~~~a~~~g~~~~------~l~ell----~--~aDvV~l~~Pl 261 (600)
.|.+|.|+|.|.||...++.++..|. +|++.|+.. ..+.++++|...+ ++.+.+ . ..|+|+-++..
T Consensus 166 ~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~v~~~t~g~g~D~v~d~~g~ 245 (352)
T 3fpc_A 166 LGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCCDIALEYGATDIINYKNGDIVEQILKATDGKGVDKVVIAGGD 245 (352)
T ss_dssp TTCCEEEECCSHHHHHHHHHHHTTTCSSEEEECCCHHHHHHHHHHTCCEEECGGGSCHHHHHHHHTTTCCEEEEEECSSC
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCceEEcCCCcCHHHHHHHHcCCCCCCEEEECCCC
Confidence 47899999999999999999999998 899999876 3566777776421 122111 1 36666666552
Q ss_pred CccccccccHhHhccCCCceEEEEcc
Q 007512 262 TPATSKVLNDETFGKMKKGVRIINVA 287 (600)
Q Consensus 262 ~~~t~~li~~~~l~~mk~gailvNva 287 (600)
.+ .-...+..++++..++.++
T Consensus 246 ~~-----~~~~~~~~l~~~G~~v~~G 266 (352)
T 3fpc_A 246 VH-----TFAQAVKMIKPGSDIGNVN 266 (352)
T ss_dssp TT-----HHHHHHHHEEEEEEEEECC
T ss_pred hH-----HHHHHHHHHhcCCEEEEec
Confidence 21 1133445566666666654
|
| >3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=94.63 E-value=0.046 Score=57.32 Aligned_cols=87 Identities=26% Similarity=0.349 Sum_probs=59.1
Q ss_pred cCCEEEEEecChhHHHHHHHhhcCCC-EEEEECCCC-ChhHHHHcCCcc-cC-------HHHHhc-----cCCEEEEecC
Q 007512 196 VGKTLAVLGFGKVGSEVARRAKGLGM-HVIAHDPYA-PADRARAIGVDL-VS-------FDEAIA-----TADFISLHMP 260 (600)
Q Consensus 196 ~gktiGIIGlG~IG~~vA~~l~~~g~-~V~~~d~~~-~~~~a~~~g~~~-~~-------l~ell~-----~aDvV~l~~P 260 (600)
.|.+|.|+|.|.||...++.++..|. +|++.|+.. ..+.++++|+.. ++ +.+.+. ..|+|+-++.
T Consensus 193 ~g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~i~~~~~gg~D~vid~~g 272 (378)
T 3uko_A 193 PGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETAKKFGVNEFVNPKDHDKPIQEVIVDLTDGGVDYSFECIG 272 (378)
T ss_dssp TTCCEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTTHHHHHHTTTCCEEECGGGCSSCHHHHHHHHTTSCBSEEEECSC
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCcEEEccccCchhHHHHHHHhcCCCCCEEEECCC
Confidence 48899999999999999999999998 899999776 456677778642 11 222221 3677777665
Q ss_pred CCccccccccHhHhccCCCc-eEEEEcc
Q 007512 261 LTPATSKVLNDETFGKMKKG-VRIINVA 287 (600)
Q Consensus 261 l~~~t~~li~~~~l~~mk~g-ailvNva 287 (600)
..+ + -...+..++++ ..++.++
T Consensus 273 ~~~-~----~~~~~~~l~~g~G~iv~~G 295 (378)
T 3uko_A 273 NVS-V----MRAALECCHKGWGTSVIVG 295 (378)
T ss_dssp CHH-H----HHHHHHTBCTTTCEEEECS
T ss_pred CHH-H----HHHHHHHhhccCCEEEEEc
Confidence 211 1 13345556664 6666665
|
| >3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021} | Back alignment and structure |
|---|
Probab=94.62 E-value=0.038 Score=57.70 Aligned_cols=46 Identities=35% Similarity=0.387 Sum_probs=38.7
Q ss_pred cCCEEEEEecChhHHHHHHHhhcCCCEEEEECCCC-ChhHHHHcCCc
Q 007512 196 VGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYA-PADRARAIGVD 241 (600)
Q Consensus 196 ~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~-~~~~a~~~g~~ 241 (600)
.|++|.|+|.|.||...++.++.+|.+|++.++.. ..+.++++|+.
T Consensus 189 ~g~~VlV~G~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~ 235 (363)
T 3uog_A 189 AGDRVVVQGTGGVALFGLQIAKATGAEVIVTSSSREKLDRAFALGAD 235 (363)
T ss_dssp TTCEEEEESSBHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTCS
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCchhHHHHHHcCCC
Confidence 48899999999999999999999999999998765 34556666653
|
| >1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=94.62 E-value=0.048 Score=56.54 Aligned_cols=88 Identities=18% Similarity=0.192 Sum_probs=60.1
Q ss_pred cCCEEEEEecChhHHHHHHHhhcCCCEEEEECCCC-ChhHHHHcCCccc-------C-HHHH---h-----ccCCEEEEe
Q 007512 196 VGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYA-PADRARAIGVDLV-------S-FDEA---I-----ATADFISLH 258 (600)
Q Consensus 196 ~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~-~~~~a~~~g~~~~-------~-l~el---l-----~~aDvV~l~ 258 (600)
.|++|.|+|.|.+|...++.++.+|.+|++.|+.. ..+.++++|...+ + .+++ . ...|+|+-+
T Consensus 168 ~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~~~~~~~~~~~~~~i~~~~~~~~g~g~D~vid~ 247 (352)
T 1e3j_A 168 LGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAIGDLPNVTIDC 247 (352)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCSEEEECCTTTSCHHHHHHHHHHHSSSCCSEEEEC
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhCCCEEEcCcccccHHHHHHHHhccccCCCCCEEEEC
Confidence 47899999999999999999999999999998765 3455677776321 1 1122 2 247888777
Q ss_pred cCCCccccccccHhHhccCCCceEEEEccC
Q 007512 259 MPLTPATSKVLNDETFGKMKKGVRIINVAR 288 (600)
Q Consensus 259 ~Pl~~~t~~li~~~~l~~mk~gailvNvar 288 (600)
+.... + -...+..++++..++.++.
T Consensus 248 ~g~~~-~----~~~~~~~l~~~G~iv~~G~ 272 (352)
T 1e3j_A 248 SGNEK-C----ITIGINITRTGGTLMLVGM 272 (352)
T ss_dssp SCCHH-H----HHHHHHHSCTTCEEEECSC
T ss_pred CCCHH-H----HHHHHHHHhcCCEEEEEec
Confidence 65221 1 1334566777777777763
|
| >3cps_A Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, glycolysis, malaria, structural genomics; HET: NAD; 1.90A {Cryptosporidium parvum iowa II} PDB: 1vsv_A* 1vsu_A* 3chz_A 3cie_A* 3cif_A* 3sth_A* | Back alignment and structure |
|---|
Probab=94.61 E-value=0.06 Score=56.44 Aligned_cols=86 Identities=26% Similarity=0.365 Sum_probs=54.6
Q ss_pred CEEEEEecChhHHHHHHHhhcC-CCEEEEE-CCCCChhH-HH--Hc----C-------------------Cccc---CHH
Q 007512 198 KTLAVLGFGKVGSEVARRAKGL-GMHVIAH-DPYAPADR-AR--AI----G-------------------VDLV---SFD 246 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~-g~~V~~~-d~~~~~~~-a~--~~----g-------------------~~~~---~l~ 246 (600)
.+|||+|+|+||+.+.|.|... +++|.+. ||....+. +. +. | +... +.+
T Consensus 18 ikVgI~G~G~iGr~llR~l~~~p~veivaindp~~~~~~~a~ll~~ds~hg~~~~~v~~~~~~l~v~g~~i~v~~~~dp~ 97 (354)
T 3cps_A 18 GTLGINGFGRIGRLVLRACMERNDITVVAINDPFMDVEYMAYLLKYDSVHGNFNGTVEVSGKDLCINGKVVKVFQAKDPA 97 (354)
T ss_dssp CEEEEECCSHHHHHHHHHHHTCSSCEEEEEECTTSCHHHHHHHHHCCTTTCSCSSCEEECC-CEEETTEEEEEECCSCGG
T ss_pred eEEEEECCCHHHHHHHHHHHcCCCeEEEEecCCCCChhHhhhhhcccccCCCCCCcEEEeCCEEEECCeEEEEEecCChH
Confidence 3899999999999999999876 7888876 44544321 11 00 0 0011 334
Q ss_pred HH-h--ccCCEEEEecCCCccccccccHhHhccCCCce--EEEEccC
Q 007512 247 EA-I--ATADFISLHMPLTPATSKVLNDETFGKMKKGV--RIINVAR 288 (600)
Q Consensus 247 el-l--~~aDvV~l~~Pl~~~t~~li~~~~l~~mk~ga--ilvNvar 288 (600)
++ + ..+|+|+.|+|... ++ +..-..++.|+ ++|+.+.
T Consensus 98 ~i~w~~~~vDvV~eatg~~~-s~----e~a~~~l~~GakkvVId~pa 139 (354)
T 3cps_A 98 EIPWGASGAQIVCESTGVFT-TE----EKASLHLKGGAKKVIISAPP 139 (354)
T ss_dssp GCCHHHHTCCEEEECSSSCC-SH----HHHGGGGTTTCSEEEESSCC
T ss_pred HCCcccCCCCEEEECCCchh-hH----HHHHHHHHcCCcEEEEeCCC
Confidence 43 2 57999999999543 22 12223367788 9999864
|
| >1obb_A Maltase, alpha-glucosidase; glycosidase, sulfinic acid, NAD+, maltose, hydrolase; HET: MAL NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2 | Back alignment and structure |
|---|
Probab=94.60 E-value=0.038 Score=60.26 Aligned_cols=113 Identities=16% Similarity=0.177 Sum_probs=69.1
Q ss_pred CCEEEEEecChhH--HHHHHHhh---cC-CCEEEEECCCCCh-hH----HH----HcCC----cc-cCHHHHhccCCEEE
Q 007512 197 GKTLAVLGFGKVG--SEVARRAK---GL-GMHVIAHDPYAPA-DR----AR----AIGV----DL-VSFDEAIATADFIS 256 (600)
Q Consensus 197 gktiGIIGlG~IG--~~vA~~l~---~~-g~~V~~~d~~~~~-~~----a~----~~g~----~~-~~l~ell~~aDvV~ 256 (600)
.++|+|||.|.+| .++|..+. ++ |.+|..||..... +. .. ..+. .. .++++.++.||+|+
T Consensus 3 ~~KIaVIGAGsVg~g~ala~~La~~~~l~~~eV~L~Di~~e~l~~~~~~~~~~l~~~~~~~~I~~ttD~~eal~dAD~VI 82 (480)
T 1obb_A 3 SVKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVGADLKFEKTMNLDDVIIDADFVI 82 (480)
T ss_dssp CCEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCSEEE
T ss_pred CCEEEEECCCchHHHHHHHHHHHhcCcCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCCCcEEEEECCHHHHhCCCCEEE
Confidence 4689999999975 55565553 34 8899999987521 11 11 1111 12 37888999999999
Q ss_pred EecCCCc-----------ccccccc-------------------------H---hHhccCCCceEEEEccCCccccHHHH
Q 007512 257 LHMPLTP-----------ATSKVLN-------------------------D---ETFGKMKKGVRIINVARGGVIDEEAL 297 (600)
Q Consensus 257 l~~Pl~~-----------~t~~li~-------------------------~---~~l~~mk~gailvNvarg~ivde~aL 297 (600)
+++|... .-.+++. . +.+....|+++++|++---=+-..++
T Consensus 83 iaagv~~~~~~~~dE~ip~K~g~~~~l~dt~g~g~~~~G~~~~~rni~i~~~i~~~i~~~~P~A~ii~~TNPvdi~t~~~ 162 (480)
T 1obb_A 83 NTAMVGGHTYLEKVRQIGEKYGYYRGIDAQEFNMVSDYYTFSNYNQLKYFVDIARKIEKLSPKAWYLQAANPIFEGTTLV 162 (480)
T ss_dssp ECCCTTHHHHHHHHHHHHHHTTCTTCTTCBTTBCCTTCCSSSCHHHHHHHHHHHHHHHHHCTTCEEEECSSCHHHHHHHH
T ss_pred ECCCcccccccccccccccccccccchhhhcCCccchhhhHHhhhhHHHHHHHHHHHHHHCCCeEEEEeCCcHHHHHHHH
Confidence 9997410 0011110 0 22334568999999975433335555
Q ss_pred HHhHhcCCceEEE
Q 007512 298 VRALDSGRVAQAA 310 (600)
Q Consensus 298 ~~aL~~g~i~ga~ 310 (600)
.+ +...++.|.+
T Consensus 163 ~k-~p~~rviG~c 174 (480)
T 1obb_A 163 TR-TVPIKAVGFC 174 (480)
T ss_dssp HH-HSCSEEEEEC
T ss_pred HH-CCCCcEEecC
Confidence 44 6667787753
|
| >3k92_A NAD-GDH, NAD-specific glutamate dehydrogenase; ROCG, oxidoreductase; 2.30A {Bacillus subtilis} PDB: 3k8z_A | Back alignment and structure |
|---|
Probab=94.60 E-value=0.35 Score=51.70 Aligned_cols=107 Identities=21% Similarity=0.349 Sum_probs=71.2
Q ss_pred ceeccCCEEEEEecChhHHHHHHHhhcCCCEEEE-EC-------CCC-ChhHHHHc----C------CcccCHHHHh-cc
Q 007512 192 GVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIA-HD-------PYA-PADRARAI----G------VDLVSFDEAI-AT 251 (600)
Q Consensus 192 g~~l~gktiGIIGlG~IG~~vA~~l~~~g~~V~~-~d-------~~~-~~~~a~~~----g------~~~~~l~ell-~~ 251 (600)
|.++.|+|+.|-|+|++|+..|+.|...|.+|++ .| |.- +.+...+. | .+.++-++++ ..
T Consensus 216 g~~l~g~~vaVqG~GnVG~~aa~~l~e~GakVVavsD~~G~iyd~~GlD~~~l~~~~~~~g~i~~~~a~~~~~~~i~~~~ 295 (424)
T 3k92_A 216 GIKLQNARIIIQGFGNAGSFLAKFMHDAGAKVIGISDANGGLYNPDGLDIPYLLDKRDSFGMVTNLFTDVITNEELLEKD 295 (424)
T ss_dssp TCCGGGCEEEEECCSHHHHHHHHHHHHHTCEEEEEECSSCEEECTTCCCHHHHHHHCCSSSCCGGGCSCCBCHHHHHHSC
T ss_pred CCCcccCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCcEECCCCCCHHHHHHHHHHhCCCCCCCcEEecCccceecc
Confidence 5679999999999999999999999999999864 34 332 33322221 2 2334555654 56
Q ss_pred CCEEEEecCCCccccccccHhHhccCCCceEEEEccCCccccHHHHHHhHhcCCc
Q 007512 252 ADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVIDEEALVRALDSGRV 306 (600)
Q Consensus 252 aDvV~l~~Pl~~~t~~li~~~~l~~mk~gailvNvarg~ivde~aL~~aL~~g~i 306 (600)
||+++-|.. .+.|+.+....++ -.+|+-.+-+++ ..++ .+.|.+..|
T Consensus 296 ~DIliPcA~-----~n~I~~~~a~~l~-ak~V~EgAN~p~-t~eA-~~iL~~rGI 342 (424)
T 3k92_A 296 CDILVPAAI-----SNQITAKNAHNIQ-ASIVVERANGPT-TIDA-TKILNERGV 342 (424)
T ss_dssp CSEEEECSC-----SSCBCTTTGGGCC-CSEEECCSSSCB-CHHH-HHHHHHTTC
T ss_pred ccEEeecCc-----ccccChhhHhhcC-ceEEEcCCCCCC-CHHH-HHHHHHCCC
Confidence 999988875 3457777777774 346666677776 4433 344555444
|
| >1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 | Back alignment and structure |
|---|
Probab=94.56 E-value=0.022 Score=53.77 Aligned_cols=35 Identities=20% Similarity=0.264 Sum_probs=31.7
Q ss_pred cCCEEEEEe-cChhHHHHHHHhhcCCCEEEEECCCC
Q 007512 196 VGKTLAVLG-FGKVGSEVARRAKGLGMHVIAHDPYA 230 (600)
Q Consensus 196 ~gktiGIIG-lG~IG~~vA~~l~~~g~~V~~~d~~~ 230 (600)
.|+++.|+| .|.||..+++.++..|++|++.++..
T Consensus 38 ~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~ 73 (198)
T 1pqw_A 38 PGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSD 73 (198)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSH
T ss_pred CCCEEEEeeCCChHHHHHHHHHHHcCCEEEEEeCCH
Confidence 478999999 69999999999999999999998764
|
| >2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.55 E-value=0.04 Score=57.00 Aligned_cols=88 Identities=19% Similarity=0.175 Sum_probs=60.4
Q ss_pred cCCEEEEEec-ChhHHHHHHHhhcCCCEEEEECCCCC-hhHHHHcCCcc-------cCHHHHhc-----cCCEEEEecCC
Q 007512 196 VGKTLAVLGF-GKVGSEVARRAKGLGMHVIAHDPYAP-ADRARAIGVDL-------VSFDEAIA-----TADFISLHMPL 261 (600)
Q Consensus 196 ~gktiGIIGl-G~IG~~vA~~l~~~g~~V~~~d~~~~-~~~a~~~g~~~-------~~l~ell~-----~aDvV~l~~Pl 261 (600)
.|+++.|+|. |.||..+++.++..|.+|++.+++.. .+.+++.|... .++.+.+. ..|+|+.++..
T Consensus 169 ~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~V~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~~D~vi~~~g~ 248 (347)
T 2hcy_A 169 AGHWVAISGAAGGLGSLAVQYAKAMGYRVLGIDGGEGKEELFRSIGGEVFIDFTKEKDIVGAVLKATDGGAHGVINVSVS 248 (347)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSTTHHHHHHHTTCCEEEETTTCSCHHHHHHHHHTSCEEEEEECSSC
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCcEEEEcCCHHHHHHHHHcCCceEEecCccHhHHHHHHHHhCCCCCEEEECCCc
Confidence 4789999999 89999999999999999999987653 34556666531 12333332 36777777652
Q ss_pred CccccccccHhHhccCCCceEEEEccC
Q 007512 262 TPATSKVLNDETFGKMKKGVRIINVAR 288 (600)
Q Consensus 262 ~~~t~~li~~~~l~~mk~gailvNvar 288 (600)
.+ .-...+..|+++..+++++.
T Consensus 249 ~~-----~~~~~~~~l~~~G~iv~~g~ 270 (347)
T 2hcy_A 249 EA-----AIEASTRYVRANGTTVLVGM 270 (347)
T ss_dssp HH-----HHHHHTTSEEEEEEEEECCC
T ss_pred HH-----HHHHHHHHHhcCCEEEEEeC
Confidence 11 12345566777777777764
|
| >2yfk_A Aspartate/ornithine carbamoyltransferase; transcarbamylase; 2.55A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=94.54 E-value=0.11 Score=55.54 Aligned_cols=97 Identities=24% Similarity=0.256 Sum_probs=65.0
Q ss_pred CceeecCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCccccccccceeccCCEEEEEe-----cCh---hHHHHHHH
Q 007512 144 GCLVVNAPTANTVAAAEHGIALLAAMARNVAQADASVKAGKWQRNKYVGVSLVGKTLAVLG-----FGK---VGSEVARR 215 (600)
Q Consensus 144 GI~V~n~p~~~~~~vAE~~l~lll~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktiGIIG-----lG~---IG~~vA~~ 215 (600)
.++|+|+-+...-++ .+++=++.+.+++ |.+ ..+.|++|+|+| +|. +..+++..
T Consensus 153 ~~PVINa~~~~~HPt--QaLaDl~TI~E~~---------G~l-------~~l~Glkva~vgd~~~s~Gd~nnVa~Sli~~ 214 (418)
T 2yfk_A 153 RPTLVNLQCDIDHPT--QAMADALHLIHEF---------GGI-------ENLKGKKVAMTWAYSPSYGKPLSVPQGIVGL 214 (418)
T ss_dssp CCEEEEEEESSCCHH--HHHHHHHHHHHHT---------TSS-------GGGTTCEEEEECCCCSSSCCCSHHHHHHHHH
T ss_pred CCeEEeCCCCccChH--HHHHHHHHHHHHh---------CCc-------cccCCCEEEEEeccccccCccchHHHHHHHH
Confidence 456889765544443 3444444444421 111 038899999998 454 99999999
Q ss_pred hhcCCCEEEEECCCC---ChhH-------HHHcCC--c-ccCHHHHhccCCEEEEe
Q 007512 216 AKGLGMHVIAHDPYA---PADR-------ARAIGV--D-LVSFDEAIATADFISLH 258 (600)
Q Consensus 216 l~~~g~~V~~~d~~~---~~~~-------a~~~g~--~-~~~l~ell~~aDvV~l~ 258 (600)
+..+|++|....|.. .++. +.+.|. . ..++++++++||+|..-
T Consensus 215 l~~lG~~v~l~~P~~~~~~p~~~~~a~~~a~~~G~~v~~~~d~~eav~~ADVVytd 270 (418)
T 2yfk_A 215 MTRLGMDVVLAHPEGYEIMPEVEEVAKKNAAEFGGNFTKTNSMAEAFKDADVVYPK 270 (418)
T ss_dssp HGGGTCEEEEECCTTCCCCHHHHHHHHHHHHHHSSEEEEESCHHHHHTTCSEEEEC
T ss_pred HHHcCCEEEEECCccccCCHHHHHHHHHHHHHcCCEEEEEcCHHHHhcCCCEEEEc
Confidence 999999999998863 2221 224564 3 34899999999999984
|
| >1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5 | Back alignment and structure |
|---|
Probab=94.54 E-value=0.031 Score=53.15 Aligned_cols=49 Identities=14% Similarity=0.188 Sum_probs=39.9
Q ss_pred cEEEEEecCCCCChhhHHhhhhcCCccccceEeeeecCCCcEEEEEEeCCC
Q 007512 527 SIILCRQVDQPGMIGTVGSILGSENVNVSFMSVGRVAPRKHAVMAIGVDEQ 577 (600)
Q Consensus 527 ~~Liv~~~D~pG~Ia~V~~iL~~~~INIa~m~v~R~~~g~~al~~i~~D~~ 577 (600)
+.+.+..+|+||+++.|+++|+++|+||...+... ..+.-.|++.++.+
T Consensus 7 ~~itv~~~DrpGiva~vt~~La~~g~NI~d~~~~~--~~~~f~~~~~v~~~ 55 (192)
T 1u8s_A 7 LVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAM--FGKEFTLLMLISGS 55 (192)
T ss_dssp EEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEE--ETTEEEEEEEEEEC
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHCCCCEEeeeeee--cCCceEEEEEEecC
Confidence 56777889999999999999999999999999876 34555667766543
|
| >1vkn_A N-acetyl-gamma-glutamyl-phosphate reductase; TM1782, structu genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; 1.80A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=94.49 E-value=0.066 Score=56.06 Aligned_cols=95 Identities=16% Similarity=0.186 Sum_probs=60.9
Q ss_pred CCEEEEEe-cChhHHHHHHHhhcC-CCEEEEECCCCCh--hHH-------HHcCCcccCHHHHhccCCEEEEecCCCccc
Q 007512 197 GKTLAVLG-FGKVGSEVARRAKGL-GMHVIAHDPYAPA--DRA-------RAIGVDLVSFDEAIATADFISLHMPLTPAT 265 (600)
Q Consensus 197 gktiGIIG-lG~IG~~vA~~l~~~-g~~V~~~d~~~~~--~~a-------~~~g~~~~~l~ell~~aDvV~l~~Pl~~~t 265 (600)
-.+||||| .|.+|+++.++|..+ ..++.......+. ... .+.-+...+.++++.++|++++|+|...
T Consensus 13 ~~~V~IvGAtG~vG~ellrlL~~hP~~el~~l~S~~~aG~~~~~~~p~~~~~l~~~~~~~~~~~~~~Dvvf~alp~~~-- 90 (351)
T 1vkn_A 13 MIRAGIIGATGYTGLELVRLLKNHPEAKITYLSSRTYAGKKLEEIFPSTLENSILSEFDPEKVSKNCDVLFTALPAGA-- 90 (351)
T ss_dssp CEEEEEESTTSHHHHHHHHHHHHCTTEEEEEEECSTTTTSBHHHHCGGGCCCCBCBCCCHHHHHHHCSEEEECCSTTH--
T ss_pred eeEEEEECCCCHHHHHHHHHHHcCCCcEEEEEeCcccccCChHHhChhhccCceEEeCCHHHhhcCCCEEEECCCcHH--
Confidence 35899996 799999999999876 4677665432211 111 1111222355666688999999999543
Q ss_pred cccccHhHhccCCCceEEEEccCCccccHHHHH
Q 007512 266 SKVLNDETFGKMKKGVRIINVARGGVIDEEALV 298 (600)
Q Consensus 266 ~~li~~~~l~~mk~gailvNvarg~ivde~aL~ 298 (600)
..+....+ .|+.+||.+..-=++..+.+
T Consensus 91 ----s~~~~~~~-~g~~VIDlSsdfRl~~~~~y 118 (351)
T 1vkn_A 91 ----SYDLVREL-KGVKIIDLGADFRFDDPGVY 118 (351)
T ss_dssp ----HHHHHTTC-CSCEEEESSSTTTCSSHHHH
T ss_pred ----HHHHHHHh-CCCEEEECChhhhCCchhhh
Confidence 45555556 79999999854333433333
|
| >2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=94.42 E-value=0.052 Score=55.77 Aligned_cols=63 Identities=17% Similarity=0.240 Sum_probs=45.1
Q ss_pred EEEEEecChhHHHHHHHhhcCCC-EEEEECCCCChhHH--HH-------c--CC--cc-cCHHHHhccCCEEEEecCCC
Q 007512 199 TLAVLGFGKVGSEVARRAKGLGM-HVIAHDPYAPADRA--RA-------I--GV--DL-VSFDEAIATADFISLHMPLT 262 (600)
Q Consensus 199 tiGIIGlG~IG~~vA~~l~~~g~-~V~~~d~~~~~~~a--~~-------~--g~--~~-~~l~ell~~aDvV~l~~Pl~ 262 (600)
+|+|||.|.+|..+|..+...|+ +|..+|........ .+ . .. .. .+. +.+++||+|+++.+..
T Consensus 1 KI~IiGaG~vG~~~a~~l~~~~l~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d~-~a~~~aD~Vi~~ag~~ 78 (308)
T 2d4a_B 1 MITILGAGKVGMATAVMLMMRGYDDLLLIARTPGKPQGEALDLAHAAAELGVDIRISGSNSY-EDMRGSDIVLVTAGIG 78 (308)
T ss_dssp CEEEECCSHHHHHHHHHHHHHTCSCEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEEESCG-GGGTTCSEEEECCSCC
T ss_pred CEEEECcCHHHHHHHHHHHhCCCCEEEEEcCChhhHHHHHHHHHHhhhhcCCCeEEEECCCH-HHhCCCCEEEEeCCCC
Confidence 58999999999999999875566 79999987532211 11 1 21 22 355 6799999999998743
|
| >3keo_A Redox-sensing transcriptional repressor REX; DNA binding protein, winged helix, rossmann fold, NAD+; HET: NAD; 1.50A {Streptococcus agalactiae serogroup iiiorganism_taxid} PDB: 3keq_A* 3ket_A* | Back alignment and structure |
|---|
Probab=94.39 E-value=0.02 Score=55.77 Aligned_cols=66 Identities=14% Similarity=0.235 Sum_probs=45.3
Q ss_pred CCEEEEEecChhHHHHHHHh--hcCCCEEEE-ECCCCC-hhHH-HHcCCcc---cCHHHHhcc--CCEEEEecCCC
Q 007512 197 GKTLAVLGFGKVGSEVARRA--KGLGMHVIA-HDPYAP-ADRA-RAIGVDL---VSFDEAIAT--ADFISLHMPLT 262 (600)
Q Consensus 197 gktiGIIGlG~IG~~vA~~l--~~~g~~V~~-~d~~~~-~~~a-~~~g~~~---~~l~ell~~--aDvV~l~~Pl~ 262 (600)
.++++|+|.|.+|+.+++.+ ...|+++.+ +|.++. ..-. .-.|+.. .++++++++ .|.+++|+|..
T Consensus 84 ~~~V~IvGaG~lG~aLa~~~~~~~~g~~iVg~~D~dp~~kiG~~~i~GvpV~~~~dL~~~v~~~~Id~vIIAvPs~ 159 (212)
T 3keo_A 84 TTNVMLVGCGNIGRALLHYRFHDRNKMQISMAFDLDSNDLVGKTTEDGIPVYGISTINDHLIDSDIETAILTVPST 159 (212)
T ss_dssp CEEEEEECCSHHHHHHTTCCCCTTSSEEEEEEEECTTSTTTTCBCTTCCBEEEGGGHHHHC-CCSCCEEEECSCGG
T ss_pred CCEEEEECcCHHHHHHHHhhhcccCCeEEEEEEeCCchhccCceeECCeEEeCHHHHHHHHHHcCCCEEEEecCch
Confidence 35899999999999999984 356899887 465543 2111 1235543 367777764 99999999943
|
| >1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=94.37 E-value=0.028 Score=58.73 Aligned_cols=87 Identities=21% Similarity=0.147 Sum_probs=55.9
Q ss_pred cCCEEEEEecChhHHHHHHHhhcCCC-EEEEECCCC-ChhHHHHcCCccc------CHHHHhc-----cCCEEEEecCCC
Q 007512 196 VGKTLAVLGFGKVGSEVARRAKGLGM-HVIAHDPYA-PADRARAIGVDLV------SFDEAIA-----TADFISLHMPLT 262 (600)
Q Consensus 196 ~gktiGIIGlG~IG~~vA~~l~~~g~-~V~~~d~~~-~~~~a~~~g~~~~------~l~ell~-----~aDvV~l~~Pl~ 262 (600)
.|++|.|+|.|.||...++.++.+|. +|++.|+.. ..+.++++|...+ ++.+.+. ..|+|+-++...
T Consensus 190 ~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~~~gg~D~vid~~g~~ 269 (371)
T 1f8f_A 190 PASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGATHVINSKTQDPVAAIKEITDGGVNFALESTGSP 269 (371)
T ss_dssp TTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTSCEEEEEECSCCH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCCEEecCCccCHHHHHHHhcCCCCcEEEECCCCH
Confidence 47899999999999999999999998 799998765 3455666675321 2222111 256666665421
Q ss_pred ccccccccHhHhccCCCceEEEEcc
Q 007512 263 PATSKVLNDETFGKMKKGVRIINVA 287 (600)
Q Consensus 263 ~~t~~li~~~~l~~mk~gailvNva 287 (600)
+ + -...+..++++..++.++
T Consensus 270 ~-~----~~~~~~~l~~~G~iv~~G 289 (371)
T 1f8f_A 270 E-I----LKQGVDALGILGKIAVVG 289 (371)
T ss_dssp H-H----HHHHHHTEEEEEEEEECC
T ss_pred H-H----HHHHHHHHhcCCEEEEeC
Confidence 1 1 133445566666666655
|
| >4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A | Back alignment and structure |
|---|
Probab=94.37 E-value=0.049 Score=58.26 Aligned_cols=64 Identities=20% Similarity=0.278 Sum_probs=47.2
Q ss_pred eccCCEEEEEecChhHHHHHHHhhcCCCEEEEECCCCChhHHHHcC----Cccc---CHHHHhccCCEEEE
Q 007512 194 SLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPADRARAIG----VDLV---SFDEAIATADFISL 257 (600)
Q Consensus 194 ~l~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~~~~a~~~g----~~~~---~l~ell~~aDvV~l 257 (600)
-+.|++|+|+|-|.+|+.+++.++.+|++|+++|++.......-.. ..+. .+.+++.++|+|+.
T Consensus 32 ~~~~~~IlIlG~G~lg~~~~~aa~~lG~~v~v~d~~~~~p~~~~ad~~~~~~~~d~~~l~~~a~~~D~V~~ 102 (419)
T 4e4t_A 32 ILPGAWLGMVGGGQLGRMFCFAAQSMGYRVAVLDPDPASPAGAVADRHLRAAYDDEAALAELAGLCEAVST 102 (419)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCTTCHHHHHSSEEECCCTTCHHHHHHHHHHCSEEEE
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCcCchhhhCCEEEECCcCCHHHHHHHHhcCCEEEE
Confidence 5679999999999999999999999999999999876322111111 1122 25566788999983
|
| >2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A | Back alignment and structure |
|---|
Probab=94.36 E-value=0.053 Score=55.72 Aligned_cols=93 Identities=18% Similarity=0.144 Sum_probs=58.9
Q ss_pred CEEEEEecChhHHHHHHHhhcCC--CEEEEECCCCChhH--HHHc--------CCcc-cCHHHHhccCCEEEEecCCCcc
Q 007512 198 KTLAVLGFGKVGSEVARRAKGLG--MHVIAHDPYAPADR--ARAI--------GVDL-VSFDEAIATADFISLHMPLTPA 264 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~g--~~V~~~d~~~~~~~--a~~~--------g~~~-~~l~ell~~aDvV~l~~Pl~~~ 264 (600)
++|+|||.|.+|.+++..+...+ -++..||....... +.++ .+.. .+-.+.++.||+|+++.+...
T Consensus 1 ~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~~~k~~g~a~dl~~~~~~~~~~~v~~~~~~a~~~aD~Vii~ag~~~- 79 (310)
T 2xxj_A 1 MKVGIVGSGMVGSATAYALALLGVAREVVLVDLDRKLAQAHAEDILHATPFAHPVWVWAGSYGDLEGARAVVLAAGVAQ- 79 (310)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHTTGGGSCCCEEEECCGGGGTTEEEEEECCCCCC-
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHHhHhhcCCeEEEECCHHHhCCCCEEEECCCCCC-
Confidence 48999999999999999998555 58999998642111 1111 1111 123567999999999987443
Q ss_pred ccccc-------cHh-------HhccCCCceEEEEccCCcccc
Q 007512 265 TSKVL-------NDE-------TFGKMKKGVRIINVARGGVID 293 (600)
Q Consensus 265 t~~li-------~~~-------~l~~mk~gailvNvarg~ivd 293 (600)
..++- |.. .+.+..|+++++++ +..+|
T Consensus 80 ~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~--tNPv~ 120 (310)
T 2xxj_A 80 RPGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLVA--TNPVD 120 (310)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEC--SSSHH
T ss_pred CCCcCHHHHHHhhHHHHHHHHHHHHHHCCCcEEEEe--cCchH
Confidence 22220 111 12223688999997 44445
|
| >2yyy_A Glyceraldehyde-3-phosphate dehydrogenase; glyceraldehyde 3-phosphate binding, alpha and beta proteins (A/B) class, MJ1146; HET: NAP; 1.85A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=94.34 E-value=0.088 Score=54.96 Aligned_cols=84 Identities=19% Similarity=0.212 Sum_probs=50.2
Q ss_pred CEEEEEecChhHHHHHHHhhcC-CCEEEEE-CCCCCh--hHHHH--------------------cCCcc-cCHHHHhccC
Q 007512 198 KTLAVLGFGKVGSEVARRAKGL-GMHVIAH-DPYAPA--DRARA--------------------IGVDL-VSFDEAIATA 252 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~-g~~V~~~-d~~~~~--~~a~~--------------------~g~~~-~~l~ell~~a 252 (600)
.+|||+|+|+||+.+++.+... +++|.+. |..... ..++. .++.. .+.++++..+
T Consensus 3 ikVgI~G~G~IGr~v~r~l~~~~~~evvaV~d~~~~~~~~l~~~dg~s~~g~~~~~~~v~~~~~~~l~v~~~~~~~~~~v 82 (343)
T 2yyy_A 3 AKVLINGYGSIGKRVADAVSMQDDMEVIGVTKTKPDFEARLAVEKGYKLFVAIPDNERVKLFEDAGIPVEGTILDIIEDA 82 (343)
T ss_dssp EEEEEECCSHHHHHHHHHHHHSSSEEEEEEEESSCSHHHHHHHHTTCCEEESSCCHHHHHHHHHTTCCCCCBGGGTGGGC
T ss_pred eEEEEECCCHHHHHHHHHHHhCCCceEEEEecCCHHHHHHHHHhcCCccccccCCCceeecccCCeEEECCchHHhccCC
Confidence 3799999999999999998765 6887765 322111 00111 11111 1345566789
Q ss_pred CEEEEecCCCccccccccHhHh--ccCCCceEEEEcc
Q 007512 253 DFISLHMPLTPATSKVLNDETF--GKMKKGVRIINVA 287 (600)
Q Consensus 253 DvV~l~~Pl~~~t~~li~~~~l--~~mk~gailvNva 287 (600)
|+|+.|+|... ..+.. ..++.|+.+|..+
T Consensus 83 DiV~eatg~~~------s~~~a~~~~l~aG~~VI~sa 113 (343)
T 2yyy_A 83 DIVVDGAPKKI------GKQNLENIYKPHKVKAILQG 113 (343)
T ss_dssp SEEEECCCTTH------HHHHHHHTTTTTTCEEEECT
T ss_pred CEEEECCCccc------cHHHHHHHHHHCCCEEEECC
Confidence 99999988432 11111 3466677666543
|
| >2we8_A Xanthine dehydrogenase; oxidoreductase; 2.30A {Mycobacterium smegmatis} PDB: 2we7_A | Back alignment and structure |
|---|
Probab=94.32 E-value=0.12 Score=54.75 Aligned_cols=87 Identities=20% Similarity=0.189 Sum_probs=65.4
Q ss_pred CCEEEEEecChhHHHHHHHhhcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEecCCCccccccccHhHhcc
Q 007512 197 GKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPADRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVLNDETFGK 276 (600)
Q Consensus 197 gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Pl~~~t~~li~~~~l~~ 276 (600)
--++-|+|.|.+|+.+++.++.+|++|.++|++... + + .+-++.+|-++...| .+.+..
T Consensus 204 ~~rL~IfGAGhva~ala~~a~~lg~~V~v~D~R~~~--~--------~-~~~fp~a~~~~~~~p----------~~~~~~ 262 (386)
T 2we8_A 204 RPRMLVFGAIDFAAAVAQQGAFLGYRVTVCDARPVF--A--------T-TARFPTADEVVVDWP----------HRYLAA 262 (386)
T ss_dssp CCEEEEECCSTHHHHHHHHHHHTTCEEEEEESCTTT--S--------C-TTTCSSSSEEEESCH----------HHHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEECCchhh--c--------c-cccCCCceEEEeCCh----------HHHHHh
Confidence 458999999999999999999999999999988521 1 1 123466776655544 112222
Q ss_pred ------CCCceEEEEccCCccccHHHHHHhHhcC
Q 007512 277 ------MKKGVRIINVARGGVIDEEALVRALDSG 304 (600)
Q Consensus 277 ------mk~gailvNvarg~ivde~aL~~aL~~g 304 (600)
+.++..++=+.++.-.|...|..+|+.+
T Consensus 263 ~~~~~~~~~~t~vvvlTh~~~~D~~~L~~aL~~~ 296 (386)
T 2we8_A 263 QAEAGAIDARTVVCVLTHDPKFDVPLLEVALRLP 296 (386)
T ss_dssp HHHHTCCCTTCEEEECCCCHHHHHHHHHHHTTSS
T ss_pred hccccCCCCCcEEEEEECChHhHHHHHHHHhcCC
Confidence 6678888888898888999999999886
|
| >3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334} | Back alignment and structure |
|---|
Probab=94.27 E-value=0.077 Score=50.48 Aligned_cols=64 Identities=20% Similarity=0.228 Sum_probs=45.9
Q ss_pred CEEEEEec-ChhHHHHHHHhhcCCCEEEEECCCCChhH-HHHcCCccc--CHH----HHhccCCEEEEecCC
Q 007512 198 KTLAVLGF-GKVGSEVARRAKGLGMHVIAHDPYAPADR-ARAIGVDLV--SFD----EAIATADFISLHMPL 261 (600)
Q Consensus 198 ktiGIIGl-G~IG~~vA~~l~~~g~~V~~~d~~~~~~~-a~~~g~~~~--~l~----ell~~aDvV~l~~Pl 261 (600)
++|.|.|. |.||+.+++.|...|.+|++.++...... ....++..+ ++. +.+..+|+|+.+...
T Consensus 1 MkilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~d~vi~~ag~ 72 (224)
T 3h2s_A 1 MKIAVLGATGRAGSAIVAEARRRGHEVLAVVRDPQKAADRLGATVATLVKEPLVLTEADLDSVDAVVDALSV 72 (224)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHTCTTSEEEECCGGGCCHHHHTTCSEEEECCCC
T ss_pred CEEEEEcCCCHHHHHHHHHHHHCCCEEEEEEecccccccccCCCceEEecccccccHhhcccCCEEEECCcc
Confidence 46899987 99999999999999999999988652211 111344321 322 578889999888765
|
| >3h9e_O Glyceraldehyde-3-phosphate dehydrogenase, testis-; oxidoreductase, structural genomics, structural genomics CON SGC, glycolysis, NAD; HET: NAD; 1.72A {Homo sapiens} PDB: 3pfw_O* 2vyn_D* 2vyv_D* | Back alignment and structure |
|---|
Probab=94.26 E-value=0.048 Score=56.81 Aligned_cols=36 Identities=33% Similarity=0.673 Sum_probs=31.6
Q ss_pred CEEEEEecChhHHHHHHHhhcCCCEEEE-ECCCCChh
Q 007512 198 KTLAVLGFGKVGSEVARRAKGLGMHVIA-HDPYAPAD 233 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~g~~V~~-~d~~~~~~ 233 (600)
.+|||.|+|+||+.++|++..+|++|++ +||+.+.+
T Consensus 8 ~kvgInGFGRIGrlv~R~~~~~~veivainDp~~d~~ 44 (346)
T 3h9e_O 8 LTVGINGFGRIGRLVLRACMEKGVKVVAVNDPFIDPE 44 (346)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEECTTCCHH
T ss_pred eEEEEECCChHHHHHHHHHHhCCCEEEEEeCCCCChh
Confidence 4899999999999999999988999988 78876554
|
| >3ip3_A Oxidoreductase, putative; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.14A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=94.24 E-value=0.045 Score=56.48 Aligned_cols=62 Identities=6% Similarity=0.064 Sum_probs=45.6
Q ss_pred CEEEEEecChhHHHHHHHhhcCCCEEEE-ECCCC--ChhHHH----HcCC--c-ccCHHHHhcc--CCEEEEecC
Q 007512 198 KTLAVLGFGKVGSEVARRAKGLGMHVIA-HDPYA--PADRAR----AIGV--D-LVSFDEAIAT--ADFISLHMP 260 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~g~~V~~-~d~~~--~~~~a~----~~g~--~-~~~l~ell~~--aDvV~l~~P 260 (600)
.++||||+|.+|+..++.+ .-++++.+ +|++. ..+.+. +.|+ . +.++++++++ .|+|++|+|
T Consensus 3 ~rvgiiG~G~~~~~~~~~l-~~~~~lvav~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~vD~V~I~tp 76 (337)
T 3ip3_A 3 LKICVIGSSGHFRYALEGL-DEECSITGIAPGVPEEDLSKLEKAISEMNIKPKKYNNWWEMLEKEKPDILVINTV 76 (337)
T ss_dssp EEEEEECSSSCHHHHHTTC-CTTEEEEEEECSSTTCCCHHHHHHHHTTTCCCEECSSHHHHHHHHCCSEEEECSS
T ss_pred eEEEEEccchhHHHHHHhc-CCCcEEEEEecCCchhhHHHHHHHHHHcCCCCcccCCHHHHhcCCCCCEEEEeCC
Confidence 4899999999999877777 55788876 78764 222222 2354 2 4589999975 899999998
|
| >2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=94.24 E-value=0.037 Score=57.20 Aligned_cols=87 Identities=16% Similarity=0.133 Sum_probs=56.8
Q ss_pred cCCEEEEEecChhHHHHHHHhhcC--CCEEEEECCCC-ChhHHHHcCCcc-cCHHH------Hhc---cCCEEEEecCCC
Q 007512 196 VGKTLAVLGFGKVGSEVARRAKGL--GMHVIAHDPYA-PADRARAIGVDL-VSFDE------AIA---TADFISLHMPLT 262 (600)
Q Consensus 196 ~gktiGIIGlG~IG~~vA~~l~~~--g~~V~~~d~~~-~~~~a~~~g~~~-~~l~e------ll~---~aDvV~l~~Pl~ 262 (600)
.|++|.|+|.|.||...++.++.+ |.+|++.+++. ..+.++++|... .+..+ .+. ..|+|+-++...
T Consensus 170 ~g~~VlV~GaG~vG~~aiqlak~~~~Ga~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~g~g~D~vid~~g~~ 249 (344)
T 2h6e_A 170 AEPVVIVNGIGGLAVYTIQILKALMKNITIVGISRSKKHRDFALELGADYVSEMKDAESLINKLTDGLGASIAIDLVGTE 249 (344)
T ss_dssp SSCEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHTCSEEECHHHHHHHHHHHHTTCCEEEEEESSCCH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHHhCCCEEeccccchHHHHHhhcCCCccEEEECCCCh
Confidence 689999999999999999999988 99999999765 445566777642 22211 111 356666665521
Q ss_pred ccccccccHhHhccCCCceEEEEcc
Q 007512 263 PATSKVLNDETFGKMKKGVRIINVA 287 (600)
Q Consensus 263 ~~t~~li~~~~l~~mk~gailvNva 287 (600)
. + -...+..|+++..++.++
T Consensus 250 ~-~----~~~~~~~l~~~G~iv~~g 269 (344)
T 2h6e_A 250 E-T----TYNLGKLLAQEGAIILVG 269 (344)
T ss_dssp H-H----HHHHHHHEEEEEEEEECC
T ss_pred H-H----HHHHHHHhhcCCEEEEeC
Confidence 1 1 123344556666666554
|
| >3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=94.19 E-value=0.029 Score=54.52 Aligned_cols=67 Identities=10% Similarity=0.116 Sum_probs=47.0
Q ss_pred ccCCEEEEEe-cChhHHHHHHHhhcCC-CEEEEECCCCChhH-HHHcCCc-----c---cCHHHHhccCCEEEEecCC
Q 007512 195 LVGKTLAVLG-FGKVGSEVARRAKGLG-MHVIAHDPYAPADR-ARAIGVD-----L---VSFDEAIATADFISLHMPL 261 (600)
Q Consensus 195 l~gktiGIIG-lG~IG~~vA~~l~~~g-~~V~~~d~~~~~~~-a~~~g~~-----~---~~l~ell~~aDvV~l~~Pl 261 (600)
...|++.|.| .|.||+.+++.|...| ++|+++++...... ....++. . .+++++++.+|+|+.+...
T Consensus 21 ~~mk~vlVtGatG~iG~~l~~~L~~~G~~~V~~~~R~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~D~vv~~a~~ 98 (236)
T 3qvo_A 21 GHMKNVLILGAGGQIARHVINQLADKQTIKQTLFARQPAKIHKPYPTNSQIIMGDVLNHAALKQAMQGQDIVYANLTG 98 (236)
T ss_dssp -CCEEEEEETTTSHHHHHHHHHHTTCTTEEEEEEESSGGGSCSSCCTTEEEEECCTTCHHHHHHHHTTCSEEEEECCS
T ss_pred CcccEEEEEeCCcHHHHHHHHHHHhCCCceEEEEEcChhhhcccccCCcEEEEecCCCHHHHHHHhcCCCEEEEcCCC
Confidence 4467899999 7999999999999999 89999987652111 0111221 1 1356778889999877763
|
| >2yfq_A Padgh, NAD-GDH, NAD-specific glutamate dehydrogenase; oxidoreductase; 2.94A {Peptoniphilus asaccharolyticus} | Back alignment and structure |
|---|
Probab=94.18 E-value=0.099 Score=56.03 Aligned_cols=95 Identities=20% Similarity=0.239 Sum_probs=57.2
Q ss_pred ceeccCCEEEEEecChhHHHHHHHhhcCCCEEEE-ECCC------------C-ChhH---HH-HcC-------CcccCHH
Q 007512 192 GVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIA-HDPY------------A-PADR---AR-AIG-------VDLVSFD 246 (600)
Q Consensus 192 g~~l~gktiGIIGlG~IG~~vA~~l~~~g~~V~~-~d~~------------~-~~~~---a~-~~g-------~~~~~l~ 246 (600)
|.++.|+++.|.|+|++|+.+|+.|...|.+|++ .|.+ - +.+. .+ +.| .+.++.+
T Consensus 207 g~~l~g~~vaVqG~GnVG~~~a~~L~~~GakvVavsD~~~~~~~G~i~d~~Gld~~~l~~~~~~~g~i~~~~~a~~i~~~ 286 (421)
T 2yfq_A 207 GIKMEDAKIAVQGFGNVGTFTVKNIERQGGKVCAIAEWDRNEGNYALYNENGIDFKELLAYKEANKTLIGFPGAERITDE 286 (421)
T ss_dssp TCCGGGSCEEEECCSHHHHHHHHHHHHTTCCEEECCBCCSSSCSBCCBCSSCCCHHHHHHHHHHHCC-------------
T ss_pred CCCccCCEEEEECcCHHHHHHHHHHHHCCCEEEEEEecCCCccceEEECCCCCCHHHHHHHHHhcCCcccCCCceEeCcc
Confidence 5578999999999999999999999999999995 3444 1 1111 11 112 1222333
Q ss_pred HHh-ccCCEEEEecCCCccccccccHhHhccCCCceEEEEccCCccc
Q 007512 247 EAI-ATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVI 292 (600)
Q Consensus 247 ell-~~aDvV~l~~Pl~~~t~~li~~~~l~~mk~gailvNvarg~iv 292 (600)
+++ ..||+++-|.+ .+.|+.+....++ ..+|+-.+.+++-
T Consensus 287 ~~~~~~~DIliP~A~-----~n~i~~~~A~~l~-ak~VvEgAN~P~t 327 (421)
T 2yfq_A 287 EFWTKEYDIIVPAAL-----ENVITGERAKTIN-AKLVCEAANGPTT 327 (421)
T ss_dssp --------CEEECSC-----SSCSCHHHHTTCC-CSEEECCSSSCSC
T ss_pred chhcCCccEEEEcCC-----cCcCCcccHHHcC-CeEEEeCCccccC
Confidence 443 36888888875 3447777777773 4566677777764
|
| >3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum} | Back alignment and structure |
|---|
Probab=94.16 E-value=0.091 Score=56.70 Aligned_cols=85 Identities=24% Similarity=0.350 Sum_probs=61.6
Q ss_pred eeccCCEEEEEecC----------hhHHHHHHHhhcCCCEEEEECCCCChhHHHHcC--Cccc-CHHHHhccCCEEEEec
Q 007512 193 VSLVGKTLAVLGFG----------KVGSEVARRAKGLGMHVIAHDPYAPADRARAIG--VDLV-SFDEAIATADFISLHM 259 (600)
Q Consensus 193 ~~l~gktiGIIGlG----------~IG~~vA~~l~~~g~~V~~~d~~~~~~~a~~~g--~~~~-~l~ell~~aDvV~l~~ 259 (600)
..+.|++|+|+|+. .=...+++.|+..|.+|.+|||+...+.....+ +.++ ++++++++||.|++++
T Consensus 329 ~~l~g~~V~vlGlafK~~tdD~ReSpa~~ii~~L~~~Ga~V~~~DP~~~~~~~~~~~~~~~~~~~~~~a~~~aDavvi~t 408 (444)
T 3vtf_A 329 GGLRGRHVGVLGLAFKPNTDDVRESRGVEVARLLLERGARVYVHDPMAMEKARAVLGDSVTYVEDPQALLDQVEGVIIAT 408 (444)
T ss_dssp TCCTTCEEEEECCSSSSSCCCCTTCHHHHHHHHHHHTTCEEEEECSSTHHHHHHHHGGGSEECSCHHHHHHHCSEEEECS
T ss_pred cccCCCEEEEEeeecCCCCCccccCcHHHHHHHHHHCCCEEEEECCCCChHHHHhcCCCceecCCHHHHHhCCCEEEEcc
Confidence 46899999999986 126789999999999999999987433222333 4443 7899999999999998
Q ss_pred CCCccccccccHhHhccCCCceEEEEc
Q 007512 260 PLTPATSKVLNDETFGKMKKGVRIINV 286 (600)
Q Consensus 260 Pl~~~t~~li~~~~l~~mk~gailvNv 286 (600)
+-. +-+.+ + + ++.+|+|+
T Consensus 409 ~h~-ef~~l-d------~-~~~vv~D~ 426 (444)
T 3vtf_A 409 AWP-QYEGL-D------Y-RGKVVVDG 426 (444)
T ss_dssp CCG-GGGGS-C------C-TTCEEEES
T ss_pred CCH-HHhCC-C------c-CCCEEEEC
Confidence 733 22211 1 3 36788885
|
| >3upl_A Oxidoreductase; rossmann fold, NADPH binding; 1.50A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} PDB: 3upy_A* | Back alignment and structure |
|---|
Probab=94.12 E-value=0.067 Score=57.75 Aligned_cols=64 Identities=19% Similarity=0.314 Sum_probs=46.8
Q ss_pred CEEEEEecChhHHHHHHHhhcC-CCEEEE-ECCCCCh-hH-HHHc-C----------------------Cc-ccCHHHHh
Q 007512 198 KTLAVLGFGKVGSEVARRAKGL-GMHVIA-HDPYAPA-DR-ARAI-G----------------------VD-LVSFDEAI 249 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~-g~~V~~-~d~~~~~-~~-a~~~-g----------------------~~-~~~l~ell 249 (600)
.+|||||+|.||+.+++.+... ++++.+ +|++... .. +.+. | +. +.++++++
T Consensus 24 IRVGIIGaG~iG~~~~~~l~~~~~veLvAV~D~~~era~~~a~~~yG~~~~~~~~~~~~~i~~a~~~g~~~v~~D~eeLL 103 (446)
T 3upl_A 24 IRIGLIGAGEMGTDIVTQVARMQGIEVGALSARRLPNTFKAIRTAYGDEENAREATTESAMTRAIEAGKIAVTDDNDLIL 103 (446)
T ss_dssp EEEEEECCSHHHHHHHHHHTTSSSEEEEEEECSSTHHHHHHHHHHHSSSTTEEECSSHHHHHHHHHTTCEEEESCHHHHH
T ss_pred eEEEEECChHHHHHHHHHHhhCCCcEEEEEEeCCHHHHHHHHHHhcCCccccccccchhhhhhhhccCCceEECCHHHHh
Confidence 4799999999999999988755 788765 6877632 22 2222 4 11 34799999
Q ss_pred c--cCCEEEEecCC
Q 007512 250 A--TADFISLHMPL 261 (600)
Q Consensus 250 ~--~aDvV~l~~Pl 261 (600)
+ +.|+|+.++|.
T Consensus 104 ~d~dIDaVviaTp~ 117 (446)
T 3upl_A 104 SNPLIDVIIDATGI 117 (446)
T ss_dssp TCTTCCEEEECSCC
T ss_pred cCCCCCEEEEcCCC
Confidence 7 58999999984
|
| >2fp4_A Succinyl-COA ligase [GDP-forming] alpha-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.2.1.8 c.23.4.1 PDB: 2fpg_A* 2fpi_A* 2fpp_A* 1euc_A* 1eud_A* | Back alignment and structure |
|---|
Probab=94.12 E-value=0.042 Score=56.47 Aligned_cols=107 Identities=18% Similarity=0.261 Sum_probs=69.9
Q ss_pred ceeccCCEEEEE-ec-ChhHHHHHHHhhcCCCEEE-EECCCCChhHHHHcCCccc-CHHHHhc--cCCEEEEecCCCccc
Q 007512 192 GVSLVGKTLAVL-GF-GKVGSEVARRAKGLGMHVI-AHDPYAPADRARAIGVDLV-SFDEAIA--TADFISLHMPLTPAT 265 (600)
Q Consensus 192 g~~l~gktiGII-Gl-G~IG~~vA~~l~~~g~~V~-~~d~~~~~~~a~~~g~~~~-~l~ell~--~aDvV~l~~Pl~~~t 265 (600)
..-+..+++.|| |. |+.|+.+++.++.+|++++ ..+|..... .-.|+... +++++.. ..|++++++| .+..
T Consensus 8 ~~l~~~~siaVV~Gasg~~G~~~~~~l~~~G~~~v~~VnP~~~g~--~i~G~~vy~sl~el~~~~~vD~avI~vP-~~~~ 84 (305)
T 2fp4_A 8 HLYVDKNTKVICQGFTGKQGTFHSQQALEYGTNLVGGTTPGKGGK--THLGLPVFNTVKEAKEQTGATASVIYVP-PPFA 84 (305)
T ss_dssp GGCCCTTCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECTTCTTC--EETTEEEESSHHHHHHHHCCCEEEECCC-HHHH
T ss_pred HHHhCCCcEEEEECCCCCHHHHHHHHHHHCCCcEEEEeCCCcCcc--eECCeeeechHHHhhhcCCCCEEEEecC-HHHH
Confidence 344667889999 99 9999999999999999854 577764111 12466654 7999988 8999999999 3333
Q ss_pred cccccHhHhccCCCceEEEEccCCccc-cHHHHHHhHhcC
Q 007512 266 SKVLNDETFGKMKKGVRIINVARGGVI-DEEALVRALDSG 304 (600)
Q Consensus 266 ~~li~~~~l~~mk~gailvNvarg~iv-de~aL~~aL~~g 304 (600)
...+.+. .+ ..-. .+++.+.|-.. ++..+.+..++.
T Consensus 85 ~~~~~e~-i~-~Gi~-~iv~~t~G~~~~~~~~l~~~a~~~ 121 (305)
T 2fp4_A 85 AAAINEA-ID-AEVP-LVVCITEGIPQQDMVRVKHRLLRQ 121 (305)
T ss_dssp HHHHHHH-HH-TTCS-EEEECCCCCCHHHHHHHHHHHTTC
T ss_pred HHHHHHH-HH-CCCC-EEEEECCCCChHHHHHHHHHHHhc
Confidence 3333332 22 1211 34556655432 344677777665
|
| >4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=94.10 E-value=0.038 Score=55.89 Aligned_cols=63 Identities=17% Similarity=0.268 Sum_probs=43.4
Q ss_pred CEEEEEe-cChhHHHHHHHhhc-CCCEEEE-ECCCCChhHHH--------HcCCcc-cCHHHHhccCCEEEEecC
Q 007512 198 KTLAVLG-FGKVGSEVARRAKG-LGMHVIA-HDPYAPADRAR--------AIGVDL-VSFDEAIATADFISLHMP 260 (600)
Q Consensus 198 ktiGIIG-lG~IG~~vA~~l~~-~g~~V~~-~d~~~~~~~a~--------~~g~~~-~~l~ell~~aDvV~l~~P 260 (600)
.+|+|+| +|+||+.+++.+.. -++++.+ +|+..+..... ..|+.. .++++++.++|+|+-++|
T Consensus 8 ikV~V~Ga~G~MG~~i~~~l~~~~~~eLv~~~d~~~~~~~G~d~gel~g~~~gv~v~~dl~~ll~~~DVVIDfT~ 82 (272)
T 4f3y_A 8 MKIAIAGASGRMGRMLIEAVLAAPDATLVGALDRTGSPQLGQDAGAFLGKQTGVALTDDIERVCAEADYLIDFTL 82 (272)
T ss_dssp EEEEESSTTSHHHHHHHHHHHHCTTEEEEEEBCCTTCTTTTSBTTTTTTCCCSCBCBCCHHHHHHHCSEEEECSC
T ss_pred cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEEecCcccccccHHHHhCCCCCceecCCHHHHhcCCCEEEEcCC
Confidence 5899999 99999999999875 4888887 68764211100 013332 367787778888877654
|
| >3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=94.06 E-value=0.038 Score=57.73 Aligned_cols=65 Identities=23% Similarity=0.362 Sum_probs=47.1
Q ss_pred cCCEEEEEec-ChhHHHHHHHhhcCC--CEEEEECCCCChhHH-----HHc-----CCcc-cCHHHHhccCCEEEEecC
Q 007512 196 VGKTLAVLGF-GKVGSEVARRAKGLG--MHVIAHDPYAPADRA-----RAI-----GVDL-VSFDEAIATADFISLHMP 260 (600)
Q Consensus 196 ~gktiGIIGl-G~IG~~vA~~l~~~g--~~V~~~d~~~~~~~a-----~~~-----g~~~-~~l~ell~~aDvV~l~~P 260 (600)
.+++|+|||. |.+|..+|..+...| -+|..||........ ... .+.. .++.+.+++||+|+++.-
T Consensus 7 ~~~KV~ViGaaG~VG~~~a~~l~~~g~~~evvLiDi~~~k~~g~a~DL~~~~~~~~~i~~t~d~~~al~dADvVvitaG 85 (343)
T 3fi9_A 7 TEEKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPFAVGLEGVAEEIRHCGFEGLNLTFTSDIKEALTDAKYIVSSGG 85 (343)
T ss_dssp CSSEEEEETTTSHHHHHHHHHHHHTTCCSCEEEECSCHHHHHHHHHHHHHHCCTTCCCEEESCHHHHHTTEEEEEECCC
T ss_pred CCCEEEEECCCChHHHHHHHHHHhcCCCCEEEEEeCCchhHHHHHHhhhhCcCCCCceEEcCCHHHHhCCCCEEEEccC
Confidence 4689999998 999999998887666 489999986421111 111 1121 367788999999999864
|
| >3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=94.05 E-value=0.035 Score=56.82 Aligned_cols=87 Identities=18% Similarity=0.146 Sum_probs=67.1
Q ss_pred cCCEEEEEe-cChhHHHHHHHhhcCCCEEEEECCCCChhHHHHcCCccc------C-HHHHhccCCEEEEecCCCccccc
Q 007512 196 VGKTLAVLG-FGKVGSEVARRAKGLGMHVIAHDPYAPADRARAIGVDLV------S-FDEAIATADFISLHMPLTPATSK 267 (600)
Q Consensus 196 ~gktiGIIG-lG~IG~~vA~~l~~~g~~V~~~d~~~~~~~a~~~g~~~~------~-l~ell~~aDvV~l~~Pl~~~t~~ 267 (600)
.|.+|.|+| .|.+|...++.++.+|.+|++.+.....+.++++|+..+ + +.+.+...|+|+-|+.. +
T Consensus 152 ~g~~vlV~Ga~G~vG~~a~q~a~~~Ga~vi~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~g~D~v~d~~g~-~---- 226 (321)
T 3tqh_A 152 QGDVVLIHAGAGGVGHLAIQLAKQKGTTVITTASKRNHAFLKALGAEQCINYHEEDFLLAISTPVDAVIDLVGG-D---- 226 (321)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEECHHHHHHHHHHTCSEEEETTTSCHHHHCCSCEEEEEESSCH-H----
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHHcCCEEEEEeccchHHHHHHcCCCEEEeCCCcchhhhhccCCCEEEECCCc-H----
Confidence 478999997 999999999999999999998864434566778887521 3 55666789999988862 1
Q ss_pred cccHhHhccCCCceEEEEccC
Q 007512 268 VLNDETFGKMKKGVRIINVAR 288 (600)
Q Consensus 268 li~~~~l~~mk~gailvNvar 288 (600)
.. ...+..++++..++.++.
T Consensus 227 ~~-~~~~~~l~~~G~iv~~g~ 246 (321)
T 3tqh_A 227 VG-IQSIDCLKETGCIVSVPT 246 (321)
T ss_dssp HH-HHHGGGEEEEEEEEECCS
T ss_pred HH-HHHHHhccCCCEEEEeCC
Confidence 12 566788999999999864
|
| >4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=94.01 E-value=0.054 Score=55.99 Aligned_cols=86 Identities=26% Similarity=0.414 Sum_probs=55.9
Q ss_pred cCCEEEEEec-ChhHHHHHHHhhcCCCEEEEECCCC-ChhHHHHcCCccc-----CHHHH----hc--cCCEEEEecCCC
Q 007512 196 VGKTLAVLGF-GKVGSEVARRAKGLGMHVIAHDPYA-PADRARAIGVDLV-----SFDEA----IA--TADFISLHMPLT 262 (600)
Q Consensus 196 ~gktiGIIGl-G~IG~~vA~~l~~~g~~V~~~d~~~-~~~~a~~~g~~~~-----~l~el----l~--~aDvV~l~~Pl~ 262 (600)
.|++|.|+|. |.||...++.++.+|.+|++.+++. ..+.+++.|...+ ++.+. .. ..|+|+-|+...
T Consensus 159 ~g~~VlV~Gasg~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ga~~v~~~~~~~~~~v~~~~~~~g~Dvvid~~g~~ 238 (342)
T 4eye_A 159 AGETVLVLGAAGGIGTAAIQIAKGMGAKVIAVVNRTAATEFVKSVGADIVLPLEEGWAKAVREATGGAGVDMVVDPIGGP 238 (342)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTCSEEEESSTTHHHHHHHHTTTSCEEEEEESCC--
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCcEEecCchhHHHHHHHHhCCCCceEEEECCchh
Confidence 5889999998 9999999999999999999998765 4556666665321 12111 11 356666665521
Q ss_pred ccccccccHhHhccCCCceEEEEcc
Q 007512 263 PATSKVLNDETFGKMKKGVRIINVA 287 (600)
Q Consensus 263 ~~t~~li~~~~l~~mk~gailvNva 287 (600)
.-...+..|+++..++.++
T Consensus 239 ------~~~~~~~~l~~~G~iv~~G 257 (342)
T 4eye_A 239 ------AFDDAVRTLASEGRLLVVG 257 (342)
T ss_dssp ------CHHHHHHTEEEEEEEEEC-
T ss_pred ------HHHHHHHhhcCCCEEEEEE
Confidence 1233455566666666654
|
| >2ep5_A 350AA long hypothetical aspartate-semialdehyde dehydrogenase; oxidoreductase, structural genomics, NPPSFA; 2.40A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=94.01 E-value=0.037 Score=57.87 Aligned_cols=84 Identities=14% Similarity=0.258 Sum_probs=49.6
Q ss_pred CEEEEEe-cChhHHHHHHHhhcC-CCEEEEE-CCC-CC-hhHHHHc-------------CCccc--CHHHHhccCCEEEE
Q 007512 198 KTLAVLG-FGKVGSEVARRAKGL-GMHVIAH-DPY-AP-ADRARAI-------------GVDLV--SFDEAIATADFISL 257 (600)
Q Consensus 198 ktiGIIG-lG~IG~~vA~~l~~~-g~~V~~~-d~~-~~-~~~a~~~-------------g~~~~--~l~ell~~aDvV~l 257 (600)
.+|||+| .|.||+.+.+.|... .+++.+. +.. .. ....... .+... +.++ +..+|+|++
T Consensus 5 ~kV~IiGAtG~iG~~llr~L~~~p~~elvai~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~vDvVf~ 83 (350)
T 2ep5_A 5 IKVSLLGSTGMVGQKMVKMLAKHPYLELVKVSASPSKIGKKYKDAVKWIEQGDIPEEVQDLPIVSTNYED-HKDVDVVLS 83 (350)
T ss_dssp EEEEEESCSSHHHHHHHHHHTTCSSEEEEEEECCGGGTTSBHHHHCCCCSSSSCCHHHHTCBEECSSGGG-GTTCSEEEE
T ss_pred cEEEEECcCCHHHHHHHHHHHhCCCcEEEEEecChhhcCCCHHHhcCcccccccccCCceeEEeeCCHHH-hcCCCEEEE
Confidence 5899999 999999999999866 5688766 322 11 1111111 11122 3333 478999999
Q ss_pred ecCCCccccccccHhHhccCCCceEEEEcc
Q 007512 258 HMPLTPATSKVLNDETFGKMKKGVRIINVA 287 (600)
Q Consensus 258 ~~Pl~~~t~~li~~~~l~~mk~gailvNva 287 (600)
|+|... +..+. -..++.|+.+||.+
T Consensus 84 atp~~~-s~~~a----~~~~~aG~~VId~s 108 (350)
T 2ep5_A 84 ALPNEL-AESIE----LELVKNGKIVVSNA 108 (350)
T ss_dssp CCCHHH-HHHHH----HHHHHTTCEEEECS
T ss_pred CCChHH-HHHHH----HHHHHCCCEEEECC
Confidence 998332 22211 11235577777765
|
| >3oqb_A Oxidoreductase; structural genomics, protein structure INI NEW YORK structural genomix research consortium, NYSGXRC, PSI-2; 2.60A {Bradyrhizobium japonicum} | Back alignment and structure |
|---|
Probab=94.00 E-value=0.088 Score=55.17 Aligned_cols=65 Identities=17% Similarity=0.192 Sum_probs=47.5
Q ss_pred CEEEEEe-cChhHHH-HH----HHhhcC-CCEE----------EEECCCCC--hhHHHHcCCc--ccCHHHHhcc--CCE
Q 007512 198 KTLAVLG-FGKVGSE-VA----RRAKGL-GMHV----------IAHDPYAP--ADRARAIGVD--LVSFDEAIAT--ADF 254 (600)
Q Consensus 198 ktiGIIG-lG~IG~~-vA----~~l~~~-g~~V----------~~~d~~~~--~~~a~~~g~~--~~~l~ell~~--aDv 254 (600)
.+||||| +|.+|+. .+ +.++.. +..+ .++|++.. ...+.+.|+. +.++++++++ .|+
T Consensus 7 irigiiG~~G~~g~~~h~~~~~~~~~~~~~~~l~~~~~~~~~~av~~~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~iD~ 86 (383)
T 3oqb_A 7 LGLIMNGVTGRMGLNQHLIRSIVAIRDQGGVRLKNGDRIMPDPILVGRSAEKVEALAKRFNIARWTTDLDAALADKNDTM 86 (383)
T ss_dssp EEEEEESTTSTHHHHTTTTTTHHHHHHHTSEECTTSCEEEEEEEEECSSSHHHHHHHHHTTCCCEESCHHHHHHCSSCCE
T ss_pred eEEEEEeccchhhhhhhHHHHHHHHhhcCceeecCCcccceeeEEEcCCHHHHHHHHHHhCCCcccCCHHHHhcCCCCCE
Confidence 4799999 9999998 66 666643 3332 37888773 2345567874 4589999965 899
Q ss_pred EEEecCCC
Q 007512 255 ISLHMPLT 262 (600)
Q Consensus 255 V~l~~Pl~ 262 (600)
|++|+|..
T Consensus 87 V~i~tp~~ 94 (383)
T 3oqb_A 87 FFDAATTQ 94 (383)
T ss_dssp EEECSCSS
T ss_pred EEECCCch
Confidence 99999943
|
| >3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=93.99 E-value=0.056 Score=53.63 Aligned_cols=64 Identities=16% Similarity=0.217 Sum_probs=47.8
Q ss_pred CCEEEEEecChhHHHHHHHhhcCCCEEEEECCCCCh-hHHHHcCCccc-----CHHHHhccCCEEEEecCCC
Q 007512 197 GKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPA-DRARAIGVDLV-----SFDEAIATADFISLHMPLT 262 (600)
Q Consensus 197 gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~~-~~a~~~g~~~~-----~l~ell~~aDvV~l~~Pl~ 262 (600)
.++|.|.|.|.||+.+++.|...|++|++.++.... ......+++.+ +++ +..+|+|+.+....
T Consensus 5 ~~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~d~~--~~~~d~vi~~a~~~ 74 (286)
T 3ius_A 5 TGTLLSFGHGYTARVLSRALAPQGWRIIGTSRNPDQMEAIRASGAEPLLWPGEEPS--LDGVTHLLISTAPD 74 (286)
T ss_dssp CCEEEEETCCHHHHHHHHHHGGGTCEEEEEESCGGGHHHHHHTTEEEEESSSSCCC--CTTCCEEEECCCCB
T ss_pred cCcEEEECCcHHHHHHHHHHHHCCCEEEEEEcChhhhhhHhhCCCeEEEecccccc--cCCCCEEEECCCcc
Confidence 478999999999999999999889999999887632 22333454322 333 77899998877644
|
| >2ejw_A HDH, homoserine dehydrogenase; NAD-dependent, oxidoreductase; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=93.97 E-value=0.021 Score=59.39 Aligned_cols=102 Identities=18% Similarity=0.131 Sum_probs=58.3
Q ss_pred CEEEEEecChhHHHHHHHhhcC---------CCEEEE-ECCCCChhHHHHcCCcccCHHHHhccCCEEEEecCCCccccc
Q 007512 198 KTLAVLGFGKVGSEVARRAKGL---------GMHVIA-HDPYAPADRARAIGVDLVSFDEAIATADFISLHMPLTPATSK 267 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~---------g~~V~~-~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Pl~~~t~~ 267 (600)
.+|||||+|.||+.+++.++.. +++|.+ +|++..............++++++ +.|+|+.|+|.......
T Consensus 4 irvgIiG~G~VG~~~~~~l~~~~~~l~~~g~~~~lvaV~d~~~~~~~~~~~~~~~~d~~~ll-~iDvVve~t~~~~~a~~ 82 (332)
T 2ejw_A 4 LKIALLGGGTVGSAFYNLVLERAEELSAFGVVPRFLGVLVRDPRKPRAIPQELLRAEPFDLL-EADLVVEAMGGVEAPLR 82 (332)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTGGGGGGGTEEEEEEEEECSCTTSCCSSCGGGEESSCCCCT-TCSEEEECCCCSHHHHH
T ss_pred eEEEEEcCCHHHHHHHHHHHhChhhHhhcCCCEEEEEEEECCHHHhhccCcccccCCHHHHh-CCCEEEECCCCcHHHHH
Confidence 3799999999999999998754 467655 576542111000111234778888 99999999984421111
Q ss_pred cccHhHhccCCCceEEEEccCCccc-cHHHHHHhHhcC
Q 007512 268 VLNDETFGKMKKGVRIINVARGGVI-DEEALVRALDSG 304 (600)
Q Consensus 268 li~~~~l~~mk~gailvNvarg~iv-de~aL~~aL~~g 304 (600)
+ ..+.|+.|.-++-.....+. ..++|.++.+++
T Consensus 83 ~----~~~AL~aGKhVVtaNkkpla~~~~eL~~~A~~~ 116 (332)
T 2ejw_A 83 L----VLPALEAGIPLITANKALLAEAWESLRPFAEEG 116 (332)
T ss_dssp H----HHHHHHTTCCEEECCHHHHHHSHHHHHHHHHTT
T ss_pred H----HHHHHHcCCeEEECCchhHHHHHHHHHHHHHhC
Confidence 1 12234445444443222222 345666655554
|
| >1v9l_A Glutamate dehydrogenase; protein-NAD complex, oxidoreductase; HET: NAD; 2.80A {Pyrobaculum islandicum} SCOP: c.2.1.7 c.58.1.1 | Back alignment and structure |
|---|
Probab=93.89 E-value=0.2 Score=53.68 Aligned_cols=34 Identities=38% Similarity=0.492 Sum_probs=31.8
Q ss_pred ceeccCCEEEEEecChhHHHHHHHhhcCCCEEEE
Q 007512 192 GVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIA 225 (600)
Q Consensus 192 g~~l~gktiGIIGlG~IG~~vA~~l~~~g~~V~~ 225 (600)
|.++.|+++.|.|+|.+|+.+|+.|...|.+|++
T Consensus 205 g~~l~gk~vaVqG~GnVG~~aa~~L~e~GakVVa 238 (421)
T 1v9l_A 205 WGGIEGKTVAIQGMGNVGRWTAYWLEKMGAKVIA 238 (421)
T ss_dssp HSCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEE
T ss_pred CCCcCCCEEEEECcCHHHHHHHHHHHHCCCEEEE
Confidence 5689999999999999999999999999999985
|
| >1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A* | Back alignment and structure |
|---|
Probab=93.85 E-value=0.084 Score=53.23 Aligned_cols=38 Identities=32% Similarity=0.313 Sum_probs=34.1
Q ss_pred eeccCCEEEEEe-cChhHHHHHHHhhcCCCEEEEECCCC
Q 007512 193 VSLVGKTLAVLG-FGKVGSEVARRAKGLGMHVIAHDPYA 230 (600)
Q Consensus 193 ~~l~gktiGIIG-lG~IG~~vA~~l~~~g~~V~~~d~~~ 230 (600)
..+.||++.|+| .|-||+.+++.|...|.+|+.+++..
T Consensus 115 ~~l~gk~vlVtGaaGGiG~aia~~L~~~G~~V~i~~R~~ 153 (287)
T 1lu9_A 115 GSVKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKL 153 (287)
T ss_dssp SCCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred cCCCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEECCH
Confidence 356789999999 99999999999999999999998764
|
| >2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.84 E-value=0.16 Score=53.13 Aligned_cols=90 Identities=27% Similarity=0.313 Sum_probs=65.6
Q ss_pred cCCEEEEEe-cChhHHHHHHHhhcCCCEEEEECCCCChhHHHHcCCccc------CHHHHh---ccCCEEEEecCCCccc
Q 007512 196 VGKTLAVLG-FGKVGSEVARRAKGLGMHVIAHDPYAPADRARAIGVDLV------SFDEAI---ATADFISLHMPLTPAT 265 (600)
Q Consensus 196 ~gktiGIIG-lG~IG~~vA~~l~~~g~~V~~~d~~~~~~~a~~~g~~~~------~l~ell---~~aDvV~l~~Pl~~~t 265 (600)
.|++|.|+| .|.||...++.++..|.+|++.+.....+.++++|...+ ++.+.+ ...|+|+-++.....+
T Consensus 183 ~g~~VlV~Ga~G~vG~~~~qla~~~Ga~Vi~~~~~~~~~~~~~lGa~~v~~~~~~~~~~~~~~~~g~D~vid~~g~~~~~ 262 (375)
T 2vn8_A 183 TGKRVLILGASGGVGTFAIQVMKAWDAHVTAVCSQDASELVRKLGADDVIDYKSGSVEEQLKSLKPFDFILDNVGGSTET 262 (375)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECGGGHHHHHHTTCSEEEETTSSCHHHHHHTSCCBSEEEESSCTTHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEeChHHHHHHHHcCCCEEEECCchHHHHHHhhcCCCCEEEECCCChhhh
Confidence 588999999 799999999999999999998874335566778887431 233322 3589999988733111
Q ss_pred cccccHhHhccCCCceEEEEccCC
Q 007512 266 SKVLNDETFGKMKKGVRIINVARG 289 (600)
Q Consensus 266 ~~li~~~~l~~mk~gailvNvarg 289 (600)
-...+..++++..++.++..
T Consensus 263 ----~~~~~~~l~~~G~iv~~g~~ 282 (375)
T 2vn8_A 263 ----WAPDFLKKWSGATYVTLVTP 282 (375)
T ss_dssp ----HGGGGBCSSSCCEEEESCCS
T ss_pred ----hHHHHHhhcCCcEEEEeCCC
Confidence 13456678999999999853
|
| >1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A | Back alignment and structure |
|---|
Probab=93.79 E-value=0.04 Score=56.82 Aligned_cols=86 Identities=15% Similarity=0.265 Sum_probs=57.7
Q ss_pred CCEEEEEecChhHHHHHHHhhcCCCEEEEECCCCChhHHHHcCCccc-----C---HHHH-hccCCEEEEecCCCccccc
Q 007512 197 GKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPADRARAIGVDLV-----S---FDEA-IATADFISLHMPLTPATSK 267 (600)
Q Consensus 197 gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~~~~a~~~g~~~~-----~---l~el-l~~aDvV~l~~Pl~~~t~~ 267 (600)
.+++.|+|+|.+|+.+++.|...|. |++.|+++..-...+.++... + |+++ +++||.+++++|..+ ..
T Consensus 115 ~~~viI~G~G~~g~~l~~~L~~~g~-v~vid~~~~~~~~~~~~~~~i~gd~~~~~~L~~a~i~~a~~vi~~~~~d~--~n 191 (336)
T 1lnq_A 115 SRHVVICGWSESTLECLRELRGSEV-FVLAEDENVRKKVLRSGANFVHGDPTRVSDLEKANVRGARAVIVDLESDS--ET 191 (336)
T ss_dssp -CEEEEESCCHHHHHHHTTGGGSCE-EEEESCGGGHHHHHHTTCEEEESCTTSHHHHHHTCSTTEEEEEECCSSHH--HH
T ss_pred cCCEEEECCcHHHHHHHHHHHhCCc-EEEEeCChhhhhHHhCCcEEEEeCCCCHHHHHhcChhhccEEEEcCCccH--HH
Confidence 5689999999999999999999999 999998763322445565322 2 3444 778999999887432 23
Q ss_pred cccHhHhccCCCceEEEE
Q 007512 268 VLNDETFGKMKKGVRIIN 285 (600)
Q Consensus 268 li~~~~l~~mk~gailvN 285 (600)
+.-......+.+...++-
T Consensus 192 ~~~~~~ar~~~~~~~iia 209 (336)
T 1lnq_A 192 IHCILGIRKIDESVRIIA 209 (336)
T ss_dssp HHHHHHHHTTCTTSEEEE
T ss_pred HHHHHHHHHHCCCCeEEE
Confidence 333344555666544443
|
| >3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=93.76 E-value=0.049 Score=56.16 Aligned_cols=86 Identities=16% Similarity=0.164 Sum_probs=57.6
Q ss_pred cCCEEEEEecC-hhHHHHHHHhhcCCCEEEEECCCC-ChhHHHHcCCccc------CHHHHh------ccCCEEEEecCC
Q 007512 196 VGKTLAVLGFG-KVGSEVARRAKGLGMHVIAHDPYA-PADRARAIGVDLV------SFDEAI------ATADFISLHMPL 261 (600)
Q Consensus 196 ~gktiGIIGlG-~IG~~vA~~l~~~g~~V~~~d~~~-~~~~a~~~g~~~~------~l~ell------~~aDvV~l~~Pl 261 (600)
.|++|.|+|.| .||...++.++..|++|++.+++. ..+.+++.|...+ ++.+.+ ...|+|+-|+..
T Consensus 144 ~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~lga~~~~~~~~~~~~~~~~~~~~~~g~Dvvid~~g~ 223 (340)
T 3gms_A 144 RNDVLLVNACGSAIGHLFAQLSQILNFRLIAVTRNNKHTEELLRLGAAYVIDTSTAPLYETVMELTNGIGADAAIDSIGG 223 (340)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHHTCSEEEETTTSCHHHHHHHHTTTSCEEEEEESSCH
T ss_pred CCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhCCCcEEEeCCcccHHHHHHHHhCCCCCcEEEECCCC
Confidence 48899999998 999999999999999999998766 5566777776421 222211 146777666552
Q ss_pred CccccccccHhHhccCCCceEEEEcc
Q 007512 262 TPATSKVLNDETFGKMKKGVRIINVA 287 (600)
Q Consensus 262 ~~~t~~li~~~~l~~mk~gailvNva 287 (600)
. .+ ...+..++++..++.++
T Consensus 224 ~-~~-----~~~~~~l~~~G~iv~~G 243 (340)
T 3gms_A 224 P-DG-----NELAFSLRPNGHFLTIG 243 (340)
T ss_dssp H-HH-----HHHHHTEEEEEEEEECC
T ss_pred h-hH-----HHHHHHhcCCCEEEEEe
Confidence 1 11 22334566777777665
|
| >2bma_A Glutamate dehydrogenase (NADP+); malaria, drug design, analysis, oligomer organization, oxidoreductase; 2.7A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=93.75 E-value=0.3 Score=52.89 Aligned_cols=34 Identities=21% Similarity=0.298 Sum_probs=31.6
Q ss_pred ceeccCCEEEEEecChhHHHHHHHhhcCCCEEEE
Q 007512 192 GVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIA 225 (600)
Q Consensus 192 g~~l~gktiGIIGlG~IG~~vA~~l~~~g~~V~~ 225 (600)
|.++.|+|+.|-|+|++|+..|+.|...|.+|++
T Consensus 247 G~~l~g~~vaVqG~GnVG~~~a~~L~~~GakvVa 280 (470)
T 2bma_A 247 NIPVEKQTAVVSGSGNVALYCVQKLLHLNVKVLT 280 (470)
T ss_dssp TCCGGGCEEEEECSSHHHHHHHHHHHHTTCEECE
T ss_pred cCCcCCCEEEEECCcHHHHHHHHHHHHCCCEEEE
Confidence 5678999999999999999999999999999984
|
| >3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A* | Back alignment and structure |
|---|
Probab=93.75 E-value=0.032 Score=53.39 Aligned_cols=64 Identities=13% Similarity=0.151 Sum_probs=45.2
Q ss_pred CEEEEEe-cChhHHHHHHHhh-cCCCEEEEECCCCC-hhHH---HHcCCc-----c---cCHHHHhccCCEEEEecCC
Q 007512 198 KTLAVLG-FGKVGSEVARRAK-GLGMHVIAHDPYAP-ADRA---RAIGVD-----L---VSFDEAIATADFISLHMPL 261 (600)
Q Consensus 198 ktiGIIG-lG~IG~~vA~~l~-~~g~~V~~~d~~~~-~~~a---~~~g~~-----~---~~l~ell~~aDvV~l~~Pl 261 (600)
|++.|.| .|.||+.+++.|. ..|++|++.+++.. .... ...++. . .+++++++.+|+|+.++..
T Consensus 6 k~vlVtGasg~iG~~~~~~l~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vv~~ag~ 83 (221)
T 3r6d_A 6 XYITILGAAGQIAQXLTATLLTYTDMHITLYGRQLKTRIPPEIIDHERVTVIEGSFQNPGXLEQAVTNAEVVFVGAME 83 (221)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHHCCCEEEEEESSHHHHSCHHHHTSTTEEEEECCTTCHHHHHHHHTTCSEEEESCCC
T ss_pred EEEEEEeCCcHHHHHHHHHHHhcCCceEEEEecCccccchhhccCCCceEEEECCCCCHHHHHHHHcCCCEEEEcCCC
Confidence 6799999 6999999999999 89999999987643 2111 111221 1 1355677888888887763
|
| >3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=93.73 E-value=0.059 Score=54.87 Aligned_cols=85 Identities=15% Similarity=0.113 Sum_probs=57.6
Q ss_pred cCCEEEEEecChhHHHHHHHhhcCCCEEEEECCCC-ChhHHHHcCCccc--CHHHHhccCCEEEEecCCCccccccccHh
Q 007512 196 VGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYA-PADRARAIGVDLV--SFDEAIATADFISLHMPLTPATSKVLNDE 272 (600)
Q Consensus 196 ~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~-~~~~a~~~g~~~~--~l~ell~~aDvV~l~~Pl~~~t~~li~~~ 272 (600)
.|++|.|+|.|.+|...++.++.+|++|++.+ +. ..+.++++|+..+ +.+++-...|+|+-|+... .+ ..
T Consensus 142 ~g~~VlV~GaG~vG~~a~qlak~~Ga~Vi~~~-~~~~~~~~~~lGa~~v~~d~~~v~~g~Dvv~d~~g~~-~~-----~~ 214 (315)
T 3goh_A 142 KQREVLIVGFGAVNNLLTQMLNNAGYVVDLVS-ASLSQALAAKRGVRHLYREPSQVTQKYFAIFDAVNSQ-NA-----AA 214 (315)
T ss_dssp SCCEEEEECCSHHHHHHHHHHHHHTCEEEEEC-SSCCHHHHHHHTEEEEESSGGGCCSCEEEEECC-------------T
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEE-ChhhHHHHHHcCCCEEEcCHHHhCCCccEEEECCCch-hH-----HH
Confidence 48899999999999999999999999999999 54 6677788886432 2222223467777666522 11 23
Q ss_pred HhccCCCceEEEEcc
Q 007512 273 TFGKMKKGVRIINVA 287 (600)
Q Consensus 273 ~l~~mk~gailvNva 287 (600)
.+..++++..++.++
T Consensus 215 ~~~~l~~~G~~v~~g 229 (315)
T 3goh_A 215 LVPSLKANGHIICIQ 229 (315)
T ss_dssp TGGGEEEEEEEEEEC
T ss_pred HHHHhcCCCEEEEEe
Confidence 455677777777764
|
| >4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=93.63 E-value=0.052 Score=56.41 Aligned_cols=86 Identities=16% Similarity=0.246 Sum_probs=57.6
Q ss_pred cCCEEEEE-ecChhHHHHHHHhhcCCCEEEEECCCC-ChhHHHHcCCccc------CHHHHhc-----cCCEEEEecCCC
Q 007512 196 VGKTLAVL-GFGKVGSEVARRAKGLGMHVIAHDPYA-PADRARAIGVDLV------SFDEAIA-----TADFISLHMPLT 262 (600)
Q Consensus 196 ~gktiGII-GlG~IG~~vA~~l~~~g~~V~~~d~~~-~~~~a~~~g~~~~------~l~ell~-----~aDvV~l~~Pl~ 262 (600)
.|++|.|+ |.|.||..+++.++..|++|++.+++. ..+.+++.|...+ ++.+.+. ..|+|+-|+..
T Consensus 167 ~g~~VlV~Gg~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~lGa~~~~~~~~~~~~~~~~~~~~~g~Dvvid~~g~- 245 (353)
T 4dup_A 167 EGESVLIHGGTSGIGTTAIQLARAFGAEVYATAGSTGKCEACERLGAKRGINYRSEDFAAVIKAETGQGVDIILDMIGA- 245 (353)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHHSSCEEEEEESCCG-
T ss_pred CCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCCEEEeCCchHHHHHHHHHhCCCceEEEECCCH-
Confidence 58899999 689999999999999999999998765 3455666665321 2222221 36777666652
Q ss_pred ccccccccHhHhccCCCceEEEEcc
Q 007512 263 PATSKVLNDETFGKMKKGVRIINVA 287 (600)
Q Consensus 263 ~~t~~li~~~~l~~mk~gailvNva 287 (600)
+ .-...+..|+++..++.++
T Consensus 246 ~-----~~~~~~~~l~~~G~iv~~g 265 (353)
T 4dup_A 246 A-----YFERNIASLAKDGCLSIIA 265 (353)
T ss_dssp G-----GHHHHHHTEEEEEEEEECC
T ss_pred H-----HHHHHHHHhccCCEEEEEE
Confidence 1 1233455566666666665
|
| >3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus} | Back alignment and structure |
|---|
Probab=93.62 E-value=0.052 Score=56.19 Aligned_cols=45 Identities=33% Similarity=0.538 Sum_probs=37.8
Q ss_pred cCCEEEEE-ecChhHHHHHHHhhcCCCEEEEECCCC-ChhHHHHcCC
Q 007512 196 VGKTLAVL-GFGKVGSEVARRAKGLGMHVIAHDPYA-PADRARAIGV 240 (600)
Q Consensus 196 ~gktiGII-GlG~IG~~vA~~l~~~g~~V~~~d~~~-~~~~a~~~g~ 240 (600)
.|++|.|+ |.|.||...++.++.+|++|++.++.. ..+.++++|.
T Consensus 150 ~g~~VlV~gg~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa 196 (346)
T 3fbg_A 150 EGKTLLIINGAGGVGSIATQIAKAYGLRVITTASRNETIEWTKKMGA 196 (346)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEECCSHHHHHHHHHHTC
T ss_pred CCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCC
Confidence 68999999 799999999999999999999999865 3455556664
|
| >1hdg_O Holo-D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase (aldehy(D)-NAD(A)); HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=93.56 E-value=0.056 Score=56.17 Aligned_cols=86 Identities=17% Similarity=0.232 Sum_probs=51.6
Q ss_pred CEEEEEecChhHHHHHHHhhcC---CCEEEEECCCCChhHHH-------Hc-----------------C--Cccc---CH
Q 007512 198 KTLAVLGFGKVGSEVARRAKGL---GMHVIAHDPYAPADRAR-------AI-----------------G--VDLV---SF 245 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~---g~~V~~~d~~~~~~~a~-------~~-----------------g--~~~~---~l 245 (600)
.+|||+|+|+||+.+.|.|... +++|.+.+...+.+... .. | +... +.
T Consensus 1 ~kVgI~G~G~iGr~llR~l~~~~~p~~eivain~~~~~~~~~~ll~~ds~~g~~~~~v~~~~~~l~v~g~~i~v~~~~dp 80 (332)
T 1hdg_O 1 ARVAINGFGRIGRLVYRIIYERKNPDIEVVAINDLTDTKTLAHLLKYDSVHKKFPGKVEYTENSLIVDGKEIKVFAEPDP 80 (332)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCTTCEEEEEECSSCHHHHHHHHHCCTTTCCCSSCEEECSSEEEETTEEEEEECCSSG
T ss_pred CEEEEEccCHHHHHHHHHHHhCCCCCeEEEEEEcCCChHHhhhhccCcCcCCCcCCcEEEcCCEEEECCeEEEEEecCCh
Confidence 4799999999999999998754 58988664322111110 00 1 0111 33
Q ss_pred HHH-hc--cCCEEEEecCCCccccccccHhHhccCCCce--EEEEccC
Q 007512 246 DEA-IA--TADFISLHMPLTPATSKVLNDETFGKMKKGV--RIINVAR 288 (600)
Q Consensus 246 ~el-l~--~aDvV~l~~Pl~~~t~~li~~~~l~~mk~ga--ilvNvar 288 (600)
+++ +. .+|+|+.|+|... ++... -..++.|+ ++|+.+.
T Consensus 81 ~~l~w~~~~vDvV~~atg~~~-s~e~a----~~~l~aGakkvVId~~a 123 (332)
T 1hdg_O 81 SKLPWKDLGVDFVIESTGVFR-NREKA----ELHLQAGAKKVIITAPA 123 (332)
T ss_dssp GGSCHHHHTCCEEEECSSSCC-BHHHH----THHHHTTCSEEEESSCC
T ss_pred HHCcccccCCCEEEECCccch-hHHHH----HHHHHcCCcEEEEeCCC
Confidence 333 33 7999999999543 22222 12245678 9999764
|
| >4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A | Back alignment and structure |
|---|
Probab=93.54 E-value=0.079 Score=57.94 Aligned_cols=107 Identities=14% Similarity=0.237 Sum_probs=67.2
Q ss_pred CCEEEEEecChhHHH-HHHHhhcCCCEEEEECCCCCh--hHHHHcCCccc--CHHHHhccCCEEEEe--cCCC-ccc---
Q 007512 197 GKTLAVLGFGKVGSE-VARRAKGLGMHVIAHDPYAPA--DRARAIGVDLV--SFDEAIATADFISLH--MPLT-PAT--- 265 (600)
Q Consensus 197 gktiGIIGlG~IG~~-vA~~l~~~g~~V~~~d~~~~~--~~a~~~g~~~~--~l~ell~~aDvV~l~--~Pl~-~~t--- 265 (600)
.|+|.|||+|.+|.+ +|+.|+..|++|.++|...+. +...+.|+... .-.+.+..+|+|++. +|.+ |+.
T Consensus 22 ~~~v~viGiG~sG~s~~A~~l~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~g~~~~~~~~~d~vV~Spgi~~~~p~~~~a 101 (494)
T 4hv4_A 22 VRHIHFVGIGGAGMGGIAEVLANEGYQISGSDLAPNSVTQHLTALGAQIYFHHRPENVLDASVVVVSTAISADNPEIVAA 101 (494)
T ss_dssp CCEEEEETTTSTTHHHHHHHHHHTTCEEEEECSSCCHHHHHHHHTTCEEESSCCGGGGTTCSEEEECTTSCTTCHHHHHH
T ss_pred CCEEEEEEEcHhhHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHCCCEEECCCCHHHcCCCCEEEECCCCCCCCHHHHHH
Confidence 579999999999997 899999999999999976543 33456687543 123456789999886 3322 111
Q ss_pred --c--ccccHh-Hhcc-CCCc-eEEEEccCCccccHHHHHHhHhc
Q 007512 266 --S--KVLNDE-TFGK-MKKG-VRIINVARGGVIDEEALVRALDS 303 (600)
Q Consensus 266 --~--~li~~~-~l~~-mk~g-ailvNvarg~ivde~aL~~aL~~ 303 (600)
+ .++.+- .+.. ++.. .+-|-=+.|+.-...-+...|+.
T Consensus 102 ~~~gi~v~~~~e~l~~~~~~~~~IaVTGTnGKTTTt~ml~~iL~~ 146 (494)
T 4hv4_A 102 REARIPVIRRAEMLAELMRYRHGIAVAGTHGKTTTTAMLSSIYAE 146 (494)
T ss_dssp HHTTCCEEEHHHHHHHHHTTSEEEEEECSSSHHHHHHHHHHHHHH
T ss_pred HHCCCCEEcHHHHHHHHhcCCCEEEEecCCChHHHHHHHHHHHHh
Confidence 1 123332 2332 3432 23333346887655555666655
|
| >1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A* | Back alignment and structure |
|---|
Probab=93.46 E-value=0.062 Score=55.14 Aligned_cols=45 Identities=31% Similarity=0.317 Sum_probs=36.4
Q ss_pred cCCEEEEEec-ChhHHHHHHHhhcCCCEEEEECCCC-ChhHHHHcCC
Q 007512 196 VGKTLAVLGF-GKVGSEVARRAKGLGMHVIAHDPYA-PADRARAIGV 240 (600)
Q Consensus 196 ~gktiGIIGl-G~IG~~vA~~l~~~g~~V~~~d~~~-~~~~a~~~g~ 240 (600)
.|+++.|.|. |.||..+++.++..|++|++.|++. ..+.+++.|.
T Consensus 145 ~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~~~~g~ 191 (333)
T 1v3u_A 145 GGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQIGF 191 (333)
T ss_dssp SSCEEEEESTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTC
T ss_pred CCCEEEEecCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcCC
Confidence 5889999998 9999999999999999999998764 2334445554
|
| >3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae} | Back alignment and structure |
|---|
Probab=93.45 E-value=0.074 Score=54.18 Aligned_cols=62 Identities=18% Similarity=0.169 Sum_probs=40.7
Q ss_pred CEEEEEe-cChhHHHHHHHhhcC-CCEEEE-ECCCCChhH----HH-----HcCCcc-cCHHHHhccCCEEEEec
Q 007512 198 KTLAVLG-FGKVGSEVARRAKGL-GMHVIA-HDPYAPADR----AR-----AIGVDL-VSFDEAIATADFISLHM 259 (600)
Q Consensus 198 ktiGIIG-lG~IG~~vA~~l~~~-g~~V~~-~d~~~~~~~----a~-----~~g~~~-~~l~ell~~aDvV~l~~ 259 (600)
.+|+|+| +|+||+.+++.+... ++++.+ +|+..+... .. ..|+.. .++++++.++|+|+-+.
T Consensus 22 irV~V~Ga~GrMGr~i~~~v~~~~~~eLvg~vd~~~~~~~G~d~gel~G~~~~gv~v~~dl~~ll~~aDVvIDFT 96 (288)
T 3ijp_A 22 MRLTVVGANGRMGRELITAIQRRKDVELCAVLVRKGSSFVDKDASILIGSDFLGVRITDDPESAFSNTEGILDFS 96 (288)
T ss_dssp EEEEESSTTSHHHHHHHHHHHTCSSEEEEEEBCCTTCTTTTSBGGGGTTCSCCSCBCBSCHHHHTTSCSEEEECS
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccccchHHhhccCcCCceeeCCHHHHhcCCCEEEEcC
Confidence 4899999 999999999998754 898776 576542111 11 123332 26777777777766544
|
| >1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=93.45 E-value=0.093 Score=55.09 Aligned_cols=46 Identities=33% Similarity=0.381 Sum_probs=38.4
Q ss_pred cCCEEEEEecChhHHHHHHHhhcCC-CEEEEECCCC-ChhHHHHcCCc
Q 007512 196 VGKTLAVLGFGKVGSEVARRAKGLG-MHVIAHDPYA-PADRARAIGVD 241 (600)
Q Consensus 196 ~gktiGIIGlG~IG~~vA~~l~~~g-~~V~~~d~~~-~~~~a~~~g~~ 241 (600)
.|++|.|+|.|.+|...++.++.+| .+|++.++.. ..+.++++|..
T Consensus 195 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~lGa~ 242 (380)
T 1vj0_A 195 AGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGAD 242 (380)
T ss_dssp BTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHTTCS
T ss_pred CCCEEEEECcCHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHHcCCc
Confidence 4889999999999999999999999 6999999765 34556667753
|
| >3kzn_A Aotcase, N-acetylornithine carbamoyltransferase; transcarbamylase, amino-acid biosynthesis, arginine biosynthesis, cytoplasm; HET: KCX AOR; 1.80A {Xanthomonas campestris PV} PDB: 3kzc_A* 3kzm_A* 3kzk_A* 3kzo_A* 3m4j_A* 3m5d_A* 3m5c_A* 3l05_A* 3l02_A* 3m4n_A* 3l06_A* 3l04_A* | Back alignment and structure |
|---|
Probab=93.43 E-value=1 Score=47.13 Aligned_cols=102 Identities=21% Similarity=0.122 Sum_probs=67.4
Q ss_pred hHHHhCCceeecCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCccccccccceeccCCEEEEEecC-------hhHH
Q 007512 138 AAATEFGCLVVNAPTANTVAAAEHGIALLAAMARNVAQADASVKAGKWQRNKYVGVSLVGKTLAVLGFG-------KVGS 210 (600)
Q Consensus 138 ~aa~~~GI~V~n~p~~~~~~vAE~~l~lll~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktiGIIGlG-------~IG~ 210 (600)
..++...|+|+|. |.+.-++ .+++=++.+.+++ ...++.|++++++|.+ ++..
T Consensus 151 ~~a~~~~vPVIN~-g~~~HPt--QaL~Dl~Ti~e~~-----------------G~~dl~g~kv~~~~~~~gd~~~~~Va~ 210 (359)
T 3kzn_A 151 SFAKYSPVPVINM-ETITHPC--QELAHALALQEHF-----------------GTPDLRGKKYVLTWTYHPKPLNTAVAN 210 (359)
T ss_dssp HHHHHCSSCEEES-SSSCCHH--HHHHHHHHHHHHH-----------------TSSCCTTCEEEEEECCCSSCCCSHHHH
T ss_pred HHHHhCCCcccCc-ccccCch--HHHHHHHHHHHHc-----------------CCccccCCeEEEEEeecCCccccchhh
Confidence 4556678999996 5444443 2333334333311 1236889999999763 6889
Q ss_pred HHHHHhhcCCCEEEEECCCC----Chh-------HHHHcCCc---ccCHHHHhccCCEEEEec
Q 007512 211 EVARRAKGLGMHVIAHDPYA----PAD-------RARAIGVD---LVSFDEAIATADFISLHM 259 (600)
Q Consensus 211 ~vA~~l~~~g~~V~~~d~~~----~~~-------~a~~~g~~---~~~l~ell~~aDvV~l~~ 259 (600)
+....+..+|++|..+-|.+ +.+ .+.+.|.. ..++++++++||+|..-.
T Consensus 211 S~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~~g~~i~~~~d~~eav~~aDvvyt~r 273 (359)
T 3kzn_A 211 SALTIATRMGMDVTLLCPTPDYILDERYMDWAAQNVAESGGSLQVSHDIDSAYAGADVVYAKS 273 (359)
T ss_dssp HHHHHHHHTTCEEEEECSSGGGCCCHHHHHHHHHHHHHHSCEEEEECCHHHHHTTCSEEEEEC
T ss_pred hhHHHHHhccccEEEEecccccCCCHHHHHHHHHHHHhhCCCcccccCHHHHhcCCeEEEEEE
Confidence 99999999999999887742 111 12334543 238999999999998754
|
| >3dr3_A N-acetyl-gamma-glutamyl-phosphate reductase; csgid target, ARGC, essential gene, amino-acid biosynthesis, arginine biosynthesis, cytoplasm; HET: MLT; 2.00A {Shigella flexneri} PDB: 2g17_A | Back alignment and structure |
|---|
Probab=93.42 E-value=0.051 Score=56.62 Aligned_cols=87 Identities=16% Similarity=0.179 Sum_probs=54.3
Q ss_pred CEEEEEe-cChhHHHHHHHhhcC-CCEEEEECCCC---Ch--hHHH----HcC---Cccc---CHHHHhccCCEEEEecC
Q 007512 198 KTLAVLG-FGKVGSEVARRAKGL-GMHVIAHDPYA---PA--DRAR----AIG---VDLV---SFDEAIATADFISLHMP 260 (600)
Q Consensus 198 ktiGIIG-lG~IG~~vA~~l~~~-g~~V~~~d~~~---~~--~~a~----~~g---~~~~---~l~ell~~aDvV~l~~P 260 (600)
.+|+|+| .|.+|+.+.++|... ++++....... +. .... -.| .... +.++++.++|+|++|+|
T Consensus 5 ~kv~IvGatG~vG~~l~~~L~~~p~~el~~l~s~~~~~saGk~~~~~~p~~~~~~~~~v~~~~~~~~~~~~~Dvvf~a~p 84 (337)
T 3dr3_A 5 LNTLIVGASGYAGAELVTYVNRHPHMNITALTVSAQSNDAGKLISDLHPQLKGIVELPLQPMSDISEFSPGVDVVFLATA 84 (337)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHCTTEEEEEEEEETTCTTTTSBHHHHCGGGTTTCCCBEEEESSGGGTCTTCSEEEECSC
T ss_pred eEEEEECCCChHHHHHHHHHHhCCCCcEEEEEecCchhhcCCchHHhCccccCccceeEeccCCHHHHhcCCCEEEECCC
Confidence 4899999 699999999999875 67877653221 11 1110 012 1222 34555589999999999
Q ss_pred CCccccccccHhHhccCCCceEEEEccCC
Q 007512 261 LTPATSKVLNDETFGKMKKGVRIINVARG 289 (600)
Q Consensus 261 l~~~t~~li~~~~l~~mk~gailvNvarg 289 (600)
... ++.+.. ..++.|+.+||.+.-
T Consensus 85 ~~~-s~~~~~----~~~~~g~~vIDlSa~ 108 (337)
T 3dr3_A 85 HEV-SHDLAP----QFLEAGCVVFDLSGA 108 (337)
T ss_dssp HHH-HHHHHH----HHHHTTCEEEECSST
T ss_pred hHH-HHHHHH----HHHHCCCEEEEcCCc
Confidence 332 222211 124679999999854
|
| >1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A* | Back alignment and structure |
|---|
Probab=93.39 E-value=0.069 Score=49.83 Aligned_cols=66 Identities=17% Similarity=0.190 Sum_probs=47.4
Q ss_pred CCEEEEEec-ChhHHHHHHHhhcCCCEEEEECCCCChhHHH-HcCCcc--------cCHHHHhccCCEEEEecCCC
Q 007512 197 GKTLAVLGF-GKVGSEVARRAKGLGMHVIAHDPYAPADRAR-AIGVDL--------VSFDEAIATADFISLHMPLT 262 (600)
Q Consensus 197 gktiGIIGl-G~IG~~vA~~l~~~g~~V~~~d~~~~~~~a~-~~g~~~--------~~l~ell~~aDvV~l~~Pl~ 262 (600)
+++|.|.|. |.||+.+++.|...|.+|++.++........ ..++.. .++.++++.+|+|+.+....
T Consensus 3 ~~~ilVtGatG~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~~ 78 (206)
T 1hdo_A 3 VKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSEGPRPAHVVVGDVLQAADVDKTVAGQDAVIVLLGTR 78 (206)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSCSSSCCCSEEEESCTTSHHHHHHHHTTCSEEEECCCCT
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCCCeEEEEEeChhhcccccCCceEEEEecCCCHHHHHHHHcCCCEEEECccCC
Confidence 478999997 9999999999998899999998765221100 122321 13557788899998887643
|
| >3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A* | Back alignment and structure |
|---|
Probab=93.38 E-value=0.058 Score=55.39 Aligned_cols=45 Identities=24% Similarity=0.265 Sum_probs=37.8
Q ss_pred cCCEEEEEe-cChhHHHHHHHhhcCCCEEEEECCCC-ChhHHHHcCC
Q 007512 196 VGKTLAVLG-FGKVGSEVARRAKGLGMHVIAHDPYA-PADRARAIGV 240 (600)
Q Consensus 196 ~gktiGIIG-lG~IG~~vA~~l~~~g~~V~~~d~~~-~~~~a~~~g~ 240 (600)
.|+++.|+| .|.||...++.++..|.+|++.+++. ..+.+++.|.
T Consensus 148 ~g~~vlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ga 194 (334)
T 3qwb_A 148 KGDYVLLFAAAGGVGLILNQLLKMKGAHTIAVASTDEKLKIAKEYGA 194 (334)
T ss_dssp TTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCC
Confidence 588999999 89999999999999999999998865 3445666665
|
| >3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A* | Back alignment and structure |
|---|
Probab=93.36 E-value=0.058 Score=55.24 Aligned_cols=86 Identities=16% Similarity=0.165 Sum_probs=56.0
Q ss_pred cCCEEEEEe-cChhHHHHHHHhhcCCCEEEEECCCC-ChhHHHHcCCccc------CHHHHh------ccCCEEEEecCC
Q 007512 196 VGKTLAVLG-FGKVGSEVARRAKGLGMHVIAHDPYA-PADRARAIGVDLV------SFDEAI------ATADFISLHMPL 261 (600)
Q Consensus 196 ~gktiGIIG-lG~IG~~vA~~l~~~g~~V~~~d~~~-~~~~a~~~g~~~~------~l~ell------~~aDvV~l~~Pl 261 (600)
.|+++.|+| .|.||...++.++..|.+|++.++.. ..+.+++.|...+ ++.+.+ ...|+|+-++..
T Consensus 140 ~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~~~~~~~~~g~Dvvid~~g~ 219 (325)
T 3jyn_A 140 PGEIILFHAAAGGVGSLACQWAKALGAKLIGTVSSPEKAAHAKALGAWETIDYSHEDVAKRVLELTDGKKCPVVYDGVGQ 219 (325)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTCCEEEEEESSCG
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCCEEEeCCCccHHHHHHHHhCCCCceEEEECCCh
Confidence 488999999 89999999999999999999998765 3455666665321 121111 135666665542
Q ss_pred CccccccccHhHhccCCCceEEEEcc
Q 007512 262 TPATSKVLNDETFGKMKKGVRIINVA 287 (600)
Q Consensus 262 ~~~t~~li~~~~l~~mk~gailvNva 287 (600)
+ .-...+..|+++..++.++
T Consensus 220 -~-----~~~~~~~~l~~~G~iv~~g 239 (325)
T 3jyn_A 220 -D-----TWLTSLDSVAPRGLVVSFG 239 (325)
T ss_dssp -G-----GHHHHHTTEEEEEEEEECC
T ss_pred -H-----HHHHHHHHhcCCCEEEEEe
Confidence 1 1233455566666666665
|
| >3aoe_E Glutamate dehydrogenase; rossmann fold, NADH, oxidoreductase; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=93.36 E-value=0.21 Score=53.49 Aligned_cols=107 Identities=27% Similarity=0.392 Sum_probs=68.3
Q ss_pred ceeccCCEEEEEecChhHHHHHHHhhcCCCEEEE--------ECCCC-ChhHH----HHcC-Cc--ccCHHHHh-ccCCE
Q 007512 192 GVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIA--------HDPYA-PADRA----RAIG-VD--LVSFDEAI-ATADF 254 (600)
Q Consensus 192 g~~l~gktiGIIGlG~IG~~vA~~l~~~g~~V~~--------~d~~~-~~~~a----~~~g-~~--~~~l~ell-~~aDv 254 (600)
|.++.|+++.|.|+|.+|+.+|+.|...|.+|++ |||.. +.+.. .+.| +. ..+-++++ ..||+
T Consensus 213 g~~l~gk~vaVqG~GnVG~~~a~~L~~~GakVVavsD~~G~i~dp~Gld~~~l~~~~~~~g~v~~~~~~~~e~~~~~~DV 292 (419)
T 3aoe_E 213 GLDLRGARVVVQGLGQVGAAVALHAERLGMRVVAVATSMGGMYAPEGLDVAEVLSAYEATGSLPRLDLAPEEVFGLEAEV 292 (419)
T ss_dssp TCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEEETTEEEECTTCCCHHHHHHHHHHHSSCSCCCBCTTTGGGSSCSE
T ss_pred CCCccCCEEEEECcCHHHHHHHHHHHHCCCEEEEEEcCCCeEECCCCCCHHHHHHHHHhhCCcceeeccchhhhccCceE
Confidence 5578999999999999999999999999999984 34433 32221 1222 11 11223333 47999
Q ss_pred EEEecCCCccccccccHhHhccCCCceEEEEccCCccccHHHHHHhHhcCCc
Q 007512 255 ISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVIDEEALVRALDSGRV 306 (600)
Q Consensus 255 V~l~~Pl~~~t~~li~~~~l~~mk~gailvNvarg~ivde~aL~~aL~~g~i 306 (600)
++-|.. .+.++.+....++- .+|+..+-+++ ..++- +.|.+..|
T Consensus 293 liP~A~-----~n~i~~~~A~~l~a-k~V~EgAN~p~-t~~A~-~~L~~~Gi 336 (419)
T 3aoe_E 293 LVLAAR-----EGALDGDRARQVQA-QAVVEVANFGL-NPEAE-AYLLGKGA 336 (419)
T ss_dssp EEECSC-----TTCBCHHHHTTCCC-SEEEECSTTCB-CHHHH-HHHHHHTC
T ss_pred EEeccc-----ccccccchHhhCCc-eEEEECCCCcC-CHHHH-HHHHHCCC
Confidence 988875 34466666666643 37778787776 34433 34544433
|
| >2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A* | Back alignment and structure |
|---|
Probab=93.30 E-value=0.048 Score=56.89 Aligned_cols=87 Identities=17% Similarity=0.174 Sum_probs=57.4
Q ss_pred cCCEEEEEe-cChhHHHHHHHhhcCCCEEEEECCCC-ChhHHHHcCCccc------CHHHHhc-----cCCEEEEecCCC
Q 007512 196 VGKTLAVLG-FGKVGSEVARRAKGLGMHVIAHDPYA-PADRARAIGVDLV------SFDEAIA-----TADFISLHMPLT 262 (600)
Q Consensus 196 ~gktiGIIG-lG~IG~~vA~~l~~~g~~V~~~d~~~-~~~~a~~~g~~~~------~l~ell~-----~aDvV~l~~Pl~ 262 (600)
.|+++.|+| .|.||..+++.++..|++|++.++.. ..+.+++.|...+ ++.+.+. ..|+|+-++..
T Consensus 163 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~~~~~~~~g~D~vid~~g~- 241 (362)
T 2c0c_A 163 EGKKVLVTAAAGGTGQFAMQLSKKAKCHVIGTCSSDEKSAFLKSLGCDRPINYKTEPVGTVLKQEYPEGVDVVYESVGG- 241 (362)
T ss_dssp TTCEEEETTTTBTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEEETTTSCHHHHHHHHCTTCEEEEEECSCT-
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCCcEEEecCChhHHHHHHHhcCCCCCEEEECCCH-
Confidence 488999999 79999999999999999999998765 3455666665321 2222221 35666666552
Q ss_pred ccccccccHhHhccCCCceEEEEccC
Q 007512 263 PATSKVLNDETFGKMKKGVRIINVAR 288 (600)
Q Consensus 263 ~~t~~li~~~~l~~mk~gailvNvar 288 (600)
+ .-...+..|+++..++.++.
T Consensus 242 ~-----~~~~~~~~l~~~G~iv~~g~ 262 (362)
T 2c0c_A 242 A-----MFDLAVDALATKGRLIVIGF 262 (362)
T ss_dssp H-----HHHHHHHHEEEEEEEEECCC
T ss_pred H-----HHHHHHHHHhcCCEEEEEeC
Confidence 1 12334555666666666653
|
| >1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein structure initiative, MCSG glucosidase, NAD-dependent; HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5 d.162.1.2 | Back alignment and structure |
|---|
Probab=93.29 E-value=0.11 Score=56.48 Aligned_cols=113 Identities=13% Similarity=0.108 Sum_probs=67.3
Q ss_pred CCEEEEEecChh-HHHHHHHhhc----C-CCEEEEECCCCChhH-----HH----HcCC----cc-cCHHHHhccCCEEE
Q 007512 197 GKTLAVLGFGKV-GSEVARRAKG----L-GMHVIAHDPYAPADR-----AR----AIGV----DL-VSFDEAIATADFIS 256 (600)
Q Consensus 197 gktiGIIGlG~I-G~~vA~~l~~----~-g~~V~~~d~~~~~~~-----a~----~~g~----~~-~~l~ell~~aDvV~ 256 (600)
.++|+|||.|.. |..+|..|.. + +.+|..||....... .. ..+. .. .++++.++.||+|+
T Consensus 28 ~~KIaVIGaGsv~~~ala~~L~~~~~~l~~~eV~L~Di~~e~~~~~~~~~~~~l~~~~~~~~I~~t~D~~eal~~AD~VV 107 (472)
T 1u8x_X 28 SFSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAPDIEFAATTDPEEAFTDVDFVM 107 (472)
T ss_dssp CEEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHHHHCTTSEEEEESCHHHHHSSCSEEE
T ss_pred CCEEEEECCCHHHHHHHHHHHHhCCCCCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCCCCEEEEECCHHHHHcCCCEEE
Confidence 469999999998 5556655543 3 668999998752211 01 1122 22 37888999999999
Q ss_pred EecCCCcc---cc--------cc--------------------cc--HhHhccCCCceEEEEccCCccccHHHHHHhHhc
Q 007512 257 LHMPLTPA---TS--------KV--------------------LN--DETFGKMKKGVRIINVARGGVIDEEALVRALDS 303 (600)
Q Consensus 257 l~~Pl~~~---t~--------~l--------------------i~--~~~l~~mk~gailvNvarg~ivde~aL~~aL~~ 303 (600)
+++|.... ++ ++ +- .+.+....|+++++|++---=+-..++.+....
T Consensus 108 iaag~~~~~g~~rd~~ip~k~g~~~~eT~G~ggl~~~~rni~i~~~i~~~i~~~~P~A~ii~~TNPvdi~T~~~~k~~p~ 187 (472)
T 1u8x_X 108 AHIRVGKYAMRALDEQIPLKYGVVGQETCGPGGIAYGMRSIGGVLEILDYMEKYSPDAWMLNYSNPAAIVAEATRRLRPN 187 (472)
T ss_dssp ECCCTTHHHHHHHHHHHHHTTTCCCCSSSHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCSCHHHHHHHHHHHSTT
T ss_pred EcCCCccccccchhhhhhhhcCcccccccCchhHHHHhhhHHHHHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHHhCCC
Confidence 99996320 11 00 00 012333568999999865332334555554444
Q ss_pred CCceEE
Q 007512 304 GRVAQA 309 (600)
Q Consensus 304 g~i~ga 309 (600)
.++.|.
T Consensus 188 ~rViG~ 193 (472)
T 1u8x_X 188 SKILNI 193 (472)
T ss_dssp CCEEEC
T ss_pred CCEEEe
Confidence 467664
|
| >1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A | Back alignment and structure |
|---|
Probab=93.29 E-value=0.13 Score=52.54 Aligned_cols=65 Identities=17% Similarity=0.170 Sum_probs=43.4
Q ss_pred CEEEEEe-cChhHHHHHHHhhcCCC--EEEEECC--CCChhH--HHHc--------CCcc-cCHHHHhccCCEEEEecCC
Q 007512 198 KTLAVLG-FGKVGSEVARRAKGLGM--HVIAHDP--YAPADR--ARAI--------GVDL-VSFDEAIATADFISLHMPL 261 (600)
Q Consensus 198 ktiGIIG-lG~IG~~vA~~l~~~g~--~V~~~d~--~~~~~~--a~~~--------g~~~-~~l~ell~~aDvV~l~~Pl 261 (600)
++|+|+| .|.+|..++..|...|. ++..+|. ...... +.++ .+.. .+-.+.++.||+|+++.+.
T Consensus 1 mKI~IiGAaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~~~~~~~dl~~~~~~~~~~~v~~~~~~a~~~aDvVi~~ag~ 80 (303)
T 1o6z_A 1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQGGYEDTAGSDVVVITAGI 80 (303)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEEECCGGGGTTCSEEEECCCC
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEcCCCChhhHHHHHHHHHHHHhhCCCcEEEeCCHHHhCCCCEEEEcCCC
Confidence 4799999 99999999999875554 7888997 431111 1110 0111 0225679999999999874
Q ss_pred C
Q 007512 262 T 262 (600)
Q Consensus 262 ~ 262 (600)
.
T Consensus 81 ~ 81 (303)
T 1o6z_A 81 P 81 (303)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >3vh1_A Ubiquitin-like modifier-activating enzyme ATG7; autophagy, zinc binding, metal binding protein; 3.00A {Saccharomyces cerevisiae} PDB: 3vh2_A | Back alignment and structure |
|---|
Probab=93.28 E-value=0.16 Score=56.57 Aligned_cols=37 Identities=22% Similarity=0.291 Sum_probs=33.2
Q ss_pred eeccCCEEEEEecChhHHHHHHHhhcCCC-EEEEECCC
Q 007512 193 VSLVGKTLAVLGFGKVGSEVARRAKGLGM-HVIAHDPY 229 (600)
Q Consensus 193 ~~l~gktiGIIGlG~IG~~vA~~l~~~g~-~V~~~d~~ 229 (600)
..|++++|.|||+|-+|..+|+.|...|. ++..+|..
T Consensus 323 ~kL~~~kVLIVGaGGLGs~va~~La~aGVG~ItLvD~D 360 (598)
T 3vh1_A 323 DIIKNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNG 360 (598)
T ss_dssp HHHHTCEEEEECCSHHHHHHHHHHHTTTCCEEEEECCS
T ss_pred HHHhCCeEEEECCCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 57999999999999999999999998886 78888754
|
| >4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A* | Back alignment and structure |
|---|
Probab=93.23 E-value=0.052 Score=55.76 Aligned_cols=87 Identities=20% Similarity=0.217 Sum_probs=56.5
Q ss_pred cCCEEEEEec-ChhHHHHHHHhhcCCCEEEEECCCC-ChhHH-HHcCCccc------CHHHHh-----ccCCEEEEecCC
Q 007512 196 VGKTLAVLGF-GKVGSEVARRAKGLGMHVIAHDPYA-PADRA-RAIGVDLV------SFDEAI-----ATADFISLHMPL 261 (600)
Q Consensus 196 ~gktiGIIGl-G~IG~~vA~~l~~~g~~V~~~d~~~-~~~~a-~~~g~~~~------~l~ell-----~~aDvV~l~~Pl 261 (600)
.|+++.|+|. |.||..+++.++..|++|++.+++. ..+.+ ++.|...+ ++.+.+ ...|+|+-++..
T Consensus 149 ~g~~vlI~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~g~ 228 (336)
T 4b7c_A 149 NGETVVISGAAGAVGSVAGQIARLKGCRVVGIAGGAEKCRFLVEELGFDGAIDYKNEDLAAGLKRECPKGIDVFFDNVGG 228 (336)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCCSEEEETTTSCHHHHHHHHCTTCEEEEEESSCH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcCCCEEEECCCHHHHHHHHHhcCCCceEEEECCCc
Confidence 4889999999 9999999999999999999998765 33444 55665321 122221 135666665541
Q ss_pred CccccccccHhHhccCCCceEEEEccC
Q 007512 262 TPATSKVLNDETFGKMKKGVRIINVAR 288 (600)
Q Consensus 262 ~~~t~~li~~~~l~~mk~gailvNvar 288 (600)
+ .-...+..|+++..++.++.
T Consensus 229 -~-----~~~~~~~~l~~~G~iv~~G~ 249 (336)
T 4b7c_A 229 -E-----ILDTVLTRIAFKARIVLCGA 249 (336)
T ss_dssp -H-----HHHHHHTTEEEEEEEEECCC
T ss_pred -c-----hHHHHHHHHhhCCEEEEEee
Confidence 1 12334555666666666653
|
| >4gsl_A Ubiquitin-like modifier-activating enzyme ATG7; ubiquitin-like protein activation enzyme, ubiquitin-like Pro transfer enzyme, protein transport; 2.70A {Saccharomyces cerevisiae} PDB: 3vh2_A 4gsk_A 3vh1_A | Back alignment and structure |
|---|
Probab=93.19 E-value=0.15 Score=56.86 Aligned_cols=74 Identities=18% Similarity=0.281 Sum_probs=52.2
Q ss_pred CceeecCCCC-ChHHHHHHHHHHHHHHHhchHHHHHHHHcCccccccccc-eeccCCEEEEEecChhHHHHHHHhhcCCC
Q 007512 144 GCLVVNAPTA-NTVAAAEHGIALLAAMARNVAQADASVKAGKWQRNKYVG-VSLVGKTLAVLGFGKVGSEVARRAKGLGM 221 (600)
Q Consensus 144 GI~V~n~p~~-~~~~vAE~~l~lll~~~R~i~~~~~~~~~g~W~~~~~~g-~~l~gktiGIIGlG~IG~~vA~~l~~~g~ 221 (600)
+-..++-... +....||.+.-+-|-+.| |.-....| ..|++++|.|||+|-+|..+|+.|...|.
T Consensus 284 ~~~~~~l~~~~dp~~la~~~~~Lnlklm~-------------wRllp~~g~ekL~~arVLIVGaGGLGs~vA~~La~aGV 350 (615)
T 4gsl_A 284 APRVVDLSSLLDPLKIADQSVDLNLKLMK-------------WRILPDLNLDIIKNTKVLLLGAGTLGCYVSRALIAWGV 350 (615)
T ss_dssp CCEEEECHHHHCHHHHHHHHHHHHHHHHH-------------HHTCTTCCHHHHHTCEEEEECCSHHHHHHHHHHHHTTC
T ss_pred ceeEEeccccCCHHHHHhhhhhhhhHHHH-------------HhhcchhhHHHHhCCeEEEECCCHHHHHHHHHHHHcCC
Confidence 3455554433 666778887777665554 32111123 36899999999999999999999998886
Q ss_pred -EEEEECCCC
Q 007512 222 -HVIAHDPYA 230 (600)
Q Consensus 222 -~V~~~d~~~ 230 (600)
++..+|...
T Consensus 351 G~ItLvD~D~ 360 (615)
T 4gsl_A 351 RKITFVDNGT 360 (615)
T ss_dssp CEEEEECCCB
T ss_pred CEEEEEcCCC
Confidence 788888643
|
| >1gad_O D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase (aldehyde(D)-NAD+(A)); HET: NAD; 1.80A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1dc4_A* 1dc3_A 1dc6_A* 1dc5_A* 1s7c_A* 1gae_O* 2vyn_A* 2vyv_A* | Back alignment and structure |
|---|
Probab=93.18 E-value=0.098 Score=54.30 Aligned_cols=31 Identities=26% Similarity=0.527 Sum_probs=26.1
Q ss_pred EEEEEecChhHHHHHHHhhcC-CCEEEEECCC
Q 007512 199 TLAVLGFGKVGSEVARRAKGL-GMHVIAHDPY 229 (600)
Q Consensus 199 tiGIIGlG~IG~~vA~~l~~~-g~~V~~~d~~ 229 (600)
+|||+|+|+||+.+.|.+... .++|.+....
T Consensus 3 kVgI~G~G~iG~~l~R~l~~~~~veiv~i~~~ 34 (330)
T 1gad_O 3 KVGINGFGRIGRIVFRAAQKRSDIEIVAINDL 34 (330)
T ss_dssp EEEEECCSHHHHHHHHHHHTCSSEEEEEEECS
T ss_pred EEEEECcCHHHHHHHHHHHcCCCeEEEEEcCC
Confidence 799999999999999998865 6888876443
|
| >3nv9_A Malic enzyme; rossmann fold, oxidoreductase; 2.25A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=93.13 E-value=0.54 Score=50.64 Aligned_cols=125 Identities=16% Similarity=0.099 Sum_probs=92.8
Q ss_pred CCceeecCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCccccccccceeccCCEEEEEecChhHHHHHHHhhcCCC-
Q 007512 143 FGCLVVNAPTANTVAAAEHGIALLAAMARNVAQADASVKAGKWQRNKYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGM- 221 (600)
Q Consensus 143 ~GI~V~n~p~~~~~~vAE~~l~lll~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktiGIIGlG~IG~~vA~~l~~~g~- 221 (600)
..|.|.|.- -..+|--+++-+++.+| ..|..|...+|.|.|.|.-|-.+|+.+...|.
T Consensus 186 ~~ipvFnDD---~qGTA~V~lAgllnAlk------------------i~gk~l~d~riV~~GAGaAGigia~ll~~~G~~ 244 (487)
T 3nv9_A 186 CDIPVWHDD---QQGTASVTLAGLLNALK------------------LVKKDIHECRMVFIGAGSSNTTCLRLIVTAGAD 244 (487)
T ss_dssp CSSCEEETT---THHHHHHHHHHHHHHHH------------------HHTCCGGGCCEEEECCSHHHHHHHHHHHHTTCC
T ss_pred ccCCccccc---cchHHHHHHHHHHHHHH------------------HhCCChhhcEEEEECCCHHHHHHHHHHHHcCCC
Confidence 379999985 34456677788887777 24678999999999999999999999999998
Q ss_pred --EEEEECCCC----Ch-h------------HHHHcCC-cccCHHHHhccCCEEEEecCCCccccccccHhHhccCCCce
Q 007512 222 --HVIAHDPYA----PA-D------------RARAIGV-DLVSFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGV 281 (600)
Q Consensus 222 --~V~~~d~~~----~~-~------------~a~~~g~-~~~~l~ell~~aDvV~l~~Pl~~~t~~li~~~~l~~mk~ga 281 (600)
+++.+|..- .. . .+....- ...+|.|+++.+|+++=.- .. ..+.++++.+..|.+.+
T Consensus 245 ~~~i~l~D~~Gli~~~R~~l~~~~~~~~k~~~A~~~n~~~~~~L~eav~~adVlIG~S-~~--~pg~ft~e~V~~Ma~~P 321 (487)
T 3nv9_A 245 PKKIVMFDSKGSLHNGREDIKKDTRFYRKWEICETTNPSKFGSIAEACVGADVLISLS-TP--GPGVVKAEWIKSMGEKP 321 (487)
T ss_dssp GGGEEEEETTEECCTTCHHHHHCGGGHHHHHHHHHSCTTCCCSHHHHHTTCSEEEECC-CS--SCCCCCHHHHHTSCSSC
T ss_pred cccEEEEeccccccCCcchhhhhcccHHHHHHHHhcccccCCCHHHHHhcCCEEEEec-cc--CCCCCCHHHHHhhcCCC
Confidence 899998752 11 1 1111111 2347999999999776533 11 14789999999999999
Q ss_pred EEEEccCCcc
Q 007512 282 RIINVARGGV 291 (600)
Q Consensus 282 ilvNvarg~i 291 (600)
+|.-.+.-..
T Consensus 322 IIFaLSNPtp 331 (487)
T 3nv9_A 322 IVFCCANPVP 331 (487)
T ss_dssp EEEECCSSSC
T ss_pred EEEECCCCCc
Confidence 9999986443
|
| >2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A* | Back alignment and structure |
|---|
Probab=93.13 E-value=0.089 Score=54.65 Aligned_cols=45 Identities=18% Similarity=0.158 Sum_probs=37.8
Q ss_pred CCEEEEEecChhHHHH-HHHh-hcCCCE-EEEECCCCC----hhHHHHcCCc
Q 007512 197 GKTLAVLGFGKVGSEV-ARRA-KGLGMH-VIAHDPYAP----ADRARAIGVD 241 (600)
Q Consensus 197 gktiGIIGlG~IG~~v-A~~l-~~~g~~-V~~~d~~~~----~~~a~~~g~~ 241 (600)
+++|.|+|.|.+|... ++.+ +.+|.+ |++.++... .+.++++|+.
T Consensus 173 ~~~VlV~GaG~vG~~a~iqla~k~~Ga~~Vi~~~~~~~~~~~~~~~~~lGa~ 224 (357)
T 2b5w_A 173 PSSAFVLGNGSLGLLTLAMLKVDDKGYENLYCLGRRDRPDPTIDIIEELDAT 224 (357)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHCTTCCCEEEEEECCCSSCHHHHHHHHTTCE
T ss_pred CCEEEEECCCHHHHHHHHHHHHHHcCCcEEEEEeCCcccHHHHHHHHHcCCc
Confidence 4899999999999999 9999 999997 999988764 4566677754
|
| >2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A* | Back alignment and structure |
|---|
Probab=93.13 E-value=0.049 Score=56.28 Aligned_cols=35 Identities=26% Similarity=0.481 Sum_probs=32.5
Q ss_pred cCCEEEEEecChhHHHHHHHhhcCCC-EEEEECCCC
Q 007512 196 VGKTLAVLGFGKVGSEVARRAKGLGM-HVIAHDPYA 230 (600)
Q Consensus 196 ~gktiGIIGlG~IG~~vA~~l~~~g~-~V~~~d~~~ 230 (600)
.|++|.|+|.|.+|...++.++.+|. +|++.++..
T Consensus 164 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~ 199 (343)
T 2dq4_A 164 SGKSVLITGAGPIGLMAAMVVRASGAGPILVSDPNP 199 (343)
T ss_dssp TTSCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCH
Confidence 68999999999999999999999999 999999764
|
| >3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=93.11 E-value=0.062 Score=51.35 Aligned_cols=64 Identities=20% Similarity=0.159 Sum_probs=46.8
Q ss_pred CEEEEEe-cChhHHHHHHHhhcCCCEEEEECCCCChhHHHHcCCc-----c---cCHHHHhccCCEEEEecCC
Q 007512 198 KTLAVLG-FGKVGSEVARRAKGLGMHVIAHDPYAPADRARAIGVD-----L---VSFDEAIATADFISLHMPL 261 (600)
Q Consensus 198 ktiGIIG-lG~IG~~vA~~l~~~g~~V~~~d~~~~~~~a~~~g~~-----~---~~l~ell~~aDvV~l~~Pl 261 (600)
++|.|.| .|.||+.+++.|...|.+|++.++..........++. . .+++++++.+|+|+.+...
T Consensus 5 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~a~~ 77 (227)
T 3dhn_A 5 KKIVLIGASGFVGSALLNEALNRGFEVTAVVRHPEKIKIENEHLKVKKADVSSLDEVCEVCKGADAVISAFNP 77 (227)
T ss_dssp CEEEEETCCHHHHHHHHHHHHTTTCEEEEECSCGGGCCCCCTTEEEECCCTTCHHHHHHHHTTCSEEEECCCC
T ss_pred CEEEEEcCCchHHHHHHHHHHHCCCEEEEEEcCcccchhccCceEEEEecCCCHHHHHHHhcCCCEEEEeCcC
Confidence 6899999 6999999999999999999999987532111111221 1 1356788999999887753
|
| >3q98_A Transcarbamylase; rossmann fold, transferase; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=93.10 E-value=0.54 Score=49.95 Aligned_cols=97 Identities=26% Similarity=0.278 Sum_probs=64.6
Q ss_pred ceeecCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCccccccccceeccCCEEEEEec-----C---hhHHHHHHHh
Q 007512 145 CLVVNAPTANTVAAAEHGIALLAAMARNVAQADASVKAGKWQRNKYVGVSLVGKTLAVLGF-----G---KVGSEVARRA 216 (600)
Q Consensus 145 I~V~n~p~~~~~~vAE~~l~lll~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktiGIIGl-----G---~IG~~vA~~l 216 (600)
++|+|+-+...-++ .+++=++.+.+++ |.+ ..|.|++|+|+|- | ++..+.+..+
T Consensus 157 ~PVINal~d~~HPt--QaLaDl~TI~E~~---------G~~-------~~l~Glkva~vgd~~~~~G~~nnVa~Sli~~~ 218 (399)
T 3q98_A 157 PALVNLQCDIDHPT--QSMADLAWLREHF---------GSL-------ENLKGKKIAMTWAYSPSYGKPLSVPQGIIGLM 218 (399)
T ss_dssp CEEEEEECSSCCHH--HHHHHHHHHHHHH---------SSS-------GGGTTCEEEEECCCCSSCCCCTHHHHHHHHHH
T ss_pred CcEEeCCCCCcCcH--HHHHHHHHHHHHh---------CCc-------cccCCCEEEEEEecccccCcchHHHHHHHHHH
Confidence 46999866554443 3333344443321 211 1478999999973 4 6889999999
Q ss_pred hcCCCEEEEECCCC---ChhH-------HHHcCCc---ccCHHHHhccCCEEEEec
Q 007512 217 KGLGMHVIAHDPYA---PADR-------ARAIGVD---LVSFDEAIATADFISLHM 259 (600)
Q Consensus 217 ~~~g~~V~~~d~~~---~~~~-------a~~~g~~---~~~l~ell~~aDvV~l~~ 259 (600)
..+|++|....|.. .++. +.+.|.. ..++++.++.||+|..-+
T Consensus 219 ~~lG~~v~~~~P~~~~~~~~~~~~a~~~a~~~G~~i~~~~d~~eav~~aDvVytd~ 274 (399)
T 3q98_A 219 TRFGMDVTLAHPEGYDLIPDVVEVAKNNAKASGGSFRQVTSMEEAFKDADIVYPKS 274 (399)
T ss_dssp GGGTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCEEEEESCHHHHHTTCSEEEECC
T ss_pred HHcCCEEEEECCcccCCCHHHHHHHHHHHHHcCCEEEEEcCHHHHhCCCCEEEecC
Confidence 99999999988753 2221 2345653 248999999999998743
|
| >1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A | Back alignment and structure |
|---|
Probab=92.99 E-value=0.08 Score=54.71 Aligned_cols=66 Identities=20% Similarity=0.190 Sum_probs=47.4
Q ss_pred CCEEEEEe-cChhHHHHHHHhhcCC--CEEEEECCCCChhHHHHc---CC----cc----cCHHHHhccCCEEEEecCCC
Q 007512 197 GKTLAVLG-FGKVGSEVARRAKGLG--MHVIAHDPYAPADRARAI---GV----DL----VSFDEAIATADFISLHMPLT 262 (600)
Q Consensus 197 gktiGIIG-lG~IG~~vA~~l~~~g--~~V~~~d~~~~~~~a~~~---g~----~~----~~l~ell~~aDvV~l~~Pl~ 262 (600)
.++|+|+| .|.+|..++..|...| .+|..+|.......+.++ .. .. .++.+.++.||+|+++.+..
T Consensus 8 ~mKI~ViGAaG~VG~~la~~L~~~g~~~ev~l~Di~~~~~~~~dL~~~~~~~~v~~~~~t~d~~~al~gaDvVi~~ag~~ 87 (326)
T 1smk_A 8 GFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNAPGVTADISHMDTGAVVRGFLGQQQLEAALTGMDLIIVPAGVP 87 (326)
T ss_dssp CEEEEEETTTSTTHHHHHHHHHHCTTEEEEEEEESSSHHHHHHHHHTSCSSCEEEEEESHHHHHHHHTTCSEEEECCCCC
T ss_pred CCEEEEECCCChHHHHHHHHHHhCCCCCEEEEEeCCCcHhHHHHhhcccccceEEEEeCCCCHHHHcCCCCEEEEcCCcC
Confidence 35899999 8999999999998767 789999965432122111 11 11 14678899999999998743
|
| >1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5 | Back alignment and structure |
|---|
Probab=92.98 E-value=0.19 Score=47.55 Aligned_cols=50 Identities=10% Similarity=0.210 Sum_probs=38.6
Q ss_pred ccEEEEEecCCCCChhhHHhhhhcCCccccceEeeeec------CCCcEEEEEEeC
Q 007512 526 GSIILCRQVDQPGMIGTVGSILGSENVNVSFMSVGRVA------PRKHAVMAIGVD 575 (600)
Q Consensus 526 ~~~Liv~~~D~pG~Ia~V~~iL~~~~INIa~m~v~R~~------~g~~al~~i~~D 575 (600)
.+.|.+..+|+||+++.|+++|+++++||.+++..-.. ..+.-.|.++++
T Consensus 93 ~~~l~v~~~D~~Gil~~v~~~l~~~~~nI~~~~~~t~~~~~~~~~~~~F~~~~~~~ 148 (192)
T 1u8s_A 93 TVEVYVESDDKLGLTEKFTQFFAQRQIGMASLSAQTISKDKLHSEQNQFHIAISAR 148 (192)
T ss_dssp EEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEEEC--------CEEEEEEEEE
T ss_pred eEEEEEEeCCCccHHHHHHHHHHHcCCcHHHhhhhcccCCccCCCCCEEEEEEEEe
Confidence 35566778999999999999999999999999887443 234456666665
|
| >1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=92.91 E-value=0.1 Score=54.91 Aligned_cols=92 Identities=24% Similarity=0.245 Sum_probs=59.1
Q ss_pred cCCEEEEEecChhHHHHHHHhhcCCC-EEEEECCCC-ChhHHHHcCCcccC------HHHHh------ccCCEEEEecCC
Q 007512 196 VGKTLAVLGFGKVGSEVARRAKGLGM-HVIAHDPYA-PADRARAIGVDLVS------FDEAI------ATADFISLHMPL 261 (600)
Q Consensus 196 ~gktiGIIGlG~IG~~vA~~l~~~g~-~V~~~d~~~-~~~~a~~~g~~~~~------l~ell------~~aDvV~l~~Pl 261 (600)
.|++|.|+|.|.+|...++.++.+|. +|++.|+.. ..+.++++|+..++ +.+.+ ...|+|+-++..
T Consensus 185 ~g~~VlV~GaG~vG~~aiqlAk~~Ga~~Vi~~~~~~~~~~~a~~lGa~~i~~~~~~~~~~~v~~~t~g~g~Dvvid~~G~ 264 (398)
T 1kol_A 185 PGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQGFEIADLSLDTPLHEQIAALLGEPEVDCAVDAVGF 264 (398)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCEEEETTSSSCHHHHHHHHHSSSCEEEEEECCCT
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHcCCcEEccCCcchHHHHHHHHhCCCCCCEEEECCCC
Confidence 47899999999999999999999998 799998765 44667777764221 22211 136777777653
Q ss_pred Ccccc-----c-----cccHhHhccCCCceEEEEcc
Q 007512 262 TPATS-----K-----VLNDETFGKMKKGVRIINVA 287 (600)
Q Consensus 262 ~~~t~-----~-----li~~~~l~~mk~gailvNva 287 (600)
..... + -.-...+..++++..++.++
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~G 300 (398)
T 1kol_A 265 EARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPG 300 (398)
T ss_dssp TCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECS
T ss_pred cccccccccccccchHHHHHHHHHHHhcCCEEEEec
Confidence 21000 0 01133455566666666665
|
| >3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A* | Back alignment and structure |
|---|
Probab=92.86 E-value=0.2 Score=51.50 Aligned_cols=96 Identities=18% Similarity=0.173 Sum_probs=60.5
Q ss_pred CEEEEEe-cChhHHHHHHHhhc---CCCEEEEECCCCCh-hHHHHc---CC--cc-----cCHHHHhccCCEEEEecCCC
Q 007512 198 KTLAVLG-FGKVGSEVARRAKG---LGMHVIAHDPYAPA-DRARAI---GV--DL-----VSFDEAIATADFISLHMPLT 262 (600)
Q Consensus 198 ktiGIIG-lG~IG~~vA~~l~~---~g~~V~~~d~~~~~-~~a~~~---g~--~~-----~~l~ell~~aDvV~l~~Pl~ 262 (600)
++|+||| .|.+|.++|..|.. +.-++..+|..... ..+.++ .. .. .+..+.+++||+|+++.+..
T Consensus 1 mKV~IiGAaG~VG~~~a~~L~~~~~~~~el~L~Di~~~~~G~a~Dl~~~~~~~~v~~~~~~~~~~~~~~aDivii~ag~~ 80 (312)
T 3hhp_A 1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDATPALEGADVVLISAGVA 80 (312)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHSCTTEEEEEECSSTTHHHHHHHHHTSCSSEEEEEECSSCCHHHHTTCSEEEECCSCS
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCCceEEEEecCCCchhHHHHhhCCCCCceEEEecCCCcHHHhCCCCEEEEeCCCC
Confidence 4899999 99999999999863 55689999986521 112111 11 11 13567899999999998632
Q ss_pred cccccc-----c--cHh-------HhccCCCceEEEEccCCccccHHH
Q 007512 263 PATSKV-----L--NDE-------TFGKMKKGVRIINVARGGVIDEEA 296 (600)
Q Consensus 263 ~~t~~l-----i--~~~-------~l~~mk~gailvNvarg~ivde~a 296 (600)
...++ + |.. .+....|++++++++ ..+|.-.
T Consensus 81 -rkpG~~R~dll~~N~~I~~~i~~~i~~~~p~a~vlvvt--NPvd~~t 125 (312)
T 3hhp_A 81 -RKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIIT--NPVNTTV 125 (312)
T ss_dssp -CCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECS--SCHHHHH
T ss_pred -CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEec--CcchhHH
Confidence 22222 1 111 122345788999995 5556443
|
| >3ing_A Homoserine dehydrogenase; NP_394635.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: NDP; 1.95A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=92.79 E-value=0.13 Score=53.16 Aligned_cols=105 Identities=15% Similarity=0.250 Sum_probs=62.0
Q ss_pred CEEEEEecChhHHHHHHHhhc-------CCCEEEE-ECCCCC-------hh----HHHHcC-Cc--ccCHHHHhc--cCC
Q 007512 198 KTLAVLGFGKVGSEVARRAKG-------LGMHVIA-HDPYAP-------AD----RARAIG-VD--LVSFDEAIA--TAD 253 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~-------~g~~V~~-~d~~~~-------~~----~a~~~g-~~--~~~l~ell~--~aD 253 (600)
.+|||+|+|.||+.+++.+.. .+++|.+ +|++.. .. ...+.| +. ..+.++++. +.|
T Consensus 5 irVgIiG~G~VG~~~~~~L~~~~~~~~g~~l~lvaVad~~~~~~~~~idl~~~~~~~~~~g~~~~~~~d~~e~l~~~~iD 84 (325)
T 3ing_A 5 IRIILMGTGNVGLNVLRIIDASNRRRSAFSIKVVGVSDSRSYASGRNLDISSIISNKEKTGRISDRAFSGPEDLMGEAAD 84 (325)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHHHC--CEEEEEEEECSSBEEECSSCCHHHHHHHHHHHSCSCSSBCCSGGGGTTSCCS
T ss_pred EEEEEEcCcHHHHHHHHHHHhchhhccCCCEEEEEEEecChhhcccccCHHHHHHHhhhcCCCCcccCCHHHHhcCCCCC
Confidence 479999999999999999975 3567766 465431 11 122234 22 126677774 589
Q ss_pred EEEEecCCCccccccccHhHhccCCCceEEEEccCCccc-cHHHHHHhHhc
Q 007512 254 FISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVI-DEEALVRALDS 303 (600)
Q Consensus 254 vV~l~~Pl~~~t~~li~~~~l~~mk~gailvNvarg~iv-de~aL~~aL~~ 303 (600)
+|+.|+|... ..+..-+.....|+.|.-+|-+..+.+. ..+.|.++.++
T Consensus 85 vVVe~T~~~~-~~~pa~~~~~~aL~aGkhVVtaNK~~la~~~~eL~~lA~~ 134 (325)
T 3ing_A 85 LLVDCTPASR-DGVREYSLYRMAFESGMNVVTANKSGLANKWHDIMDSANQ 134 (325)
T ss_dssp EEEECCCCCS-SSHHHHHHHHHHHHTTCEEEECCCHHHHHHHHHHHHHHHH
T ss_pred EEEECCCCcc-ccchHHHHHHHHHHCCCeEEEcCchhHHHHHHHHHHHHHH
Confidence 9999999441 1000012234446777777766555543 34455555444
|
| >2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A* | Back alignment and structure |
|---|
Probab=92.79 E-value=0.063 Score=55.27 Aligned_cols=45 Identities=29% Similarity=0.343 Sum_probs=36.1
Q ss_pred cCCEEEEEec-ChhHHHHHHHhhcCCCEEEEECCCC-ChhHHH-HcCC
Q 007512 196 VGKTLAVLGF-GKVGSEVARRAKGLGMHVIAHDPYA-PADRAR-AIGV 240 (600)
Q Consensus 196 ~gktiGIIGl-G~IG~~vA~~l~~~g~~V~~~d~~~-~~~~a~-~~g~ 240 (600)
.|+++.|+|. |.||..+++.++..|++|++.+++. ..+.++ ++|.
T Consensus 155 ~g~~vlI~Ga~g~iG~~~~~~a~~~G~~V~~~~~~~~~~~~~~~~~g~ 202 (345)
T 2j3h_A 155 EGETVYVSAASGAVGQLVGQLAKMMGCYVVGSAGSKEKVDLLKTKFGF 202 (345)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTSCC
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcCC
Confidence 4889999997 9999999999999999999998764 233344 3554
|
| >2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A* | Back alignment and structure |
|---|
Probab=92.78 E-value=0.14 Score=52.36 Aligned_cols=98 Identities=16% Similarity=0.076 Sum_probs=58.3
Q ss_pred CEEEEEecChhHHHHHHHhhcCC--CEEEEECCCCChh--HHHHc-------CC--c--ccCHHHHhccCCEEEEecC--
Q 007512 198 KTLAVLGFGKVGSEVARRAKGLG--MHVIAHDPYAPAD--RARAI-------GV--D--LVSFDEAIATADFISLHMP-- 260 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~g--~~V~~~d~~~~~~--~a~~~-------g~--~--~~~l~ell~~aDvV~l~~P-- 260 (600)
+||+|||.|.||+.+|-.|+..+ -++..||...... .+.++ +. . ..+--+.++.||+|++..-
T Consensus 1 MKV~IiGaG~VG~~~a~~l~~~~~~~el~L~Di~~~~~~G~a~DL~h~~~~~~~~~~i~~~~d~~~~~~aDvVvitAG~p 80 (294)
T 2x0j_A 1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGADYSLLKGSEIIVVTAGLA 80 (294)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHGGGTCCCEEEEESCGGGGTTCSEEEECCCCC
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCCCCcchhhhhhhhcccccCCCCCeEecCCCHHHhCCCCEEEEecCCC
Confidence 48999999999999999887443 4899999864221 11111 11 1 1122357899999999874
Q ss_pred CCc-cccc-cc--cHh-------HhccCCCceEEEEccCCccccHHHH
Q 007512 261 LTP-ATSK-VL--NDE-------TFGKMKKGVRIINVARGGVIDEEAL 297 (600)
Q Consensus 261 l~~-~t~~-li--~~~-------~l~~mk~gailvNvarg~ivde~aL 297 (600)
..| .||. ++ |.+ .+.+-.|+++++.++ ..+|.-..
T Consensus 81 rkpGmtR~dLl~~Na~I~~~i~~~i~~~~p~aivlvvs--NPvd~~t~ 126 (294)
T 2x0j_A 81 RKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVT--NPMDVMTY 126 (294)
T ss_dssp CCSSSCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECS--SSHHHHHH
T ss_pred CCCCCchHHHHHHHHHHHHHHHHHHHhcCCceEEEEec--CcchhhHH
Confidence 222 1221 11 111 223345778888874 44564433
|
| >3hn7_A UDP-N-acetylmuramate-L-alanine ligase; ATP-binding, nucleotide-binding, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4} | Back alignment and structure |
|---|
Probab=92.73 E-value=0.16 Score=55.88 Aligned_cols=109 Identities=15% Similarity=0.169 Sum_probs=67.0
Q ss_pred ccCCEEEEEecChhHHH-HHHHhhcCCCEEEEECCCCCh---hHHHHcCCccc---CHHHHhccCCEEEEe--cCCC-cc
Q 007512 195 LVGKTLAVLGFGKVGSE-VARRAKGLGMHVIAHDPYAPA---DRARAIGVDLV---SFDEAIATADFISLH--MPLT-PA 264 (600)
Q Consensus 195 l~gktiGIIGlG~IG~~-vA~~l~~~g~~V~~~d~~~~~---~~a~~~g~~~~---~l~ell~~aDvV~l~--~Pl~-~~ 264 (600)
..+++|-|||.|.+|.+ +|+.|+..|++|.++|..... +..++.|+... +.+.+..++|+|+.. +|.+ |+
T Consensus 17 ~~~~~i~~iGiGg~Gms~lA~~l~~~G~~V~~sD~~~~~~~~~~L~~~gi~~~~G~~~~~~~~~~d~vV~Spgi~~~~p~ 96 (524)
T 3hn7_A 17 FQGMHIHILGICGTFMGSLALLARALGHTVTGSDANIYPPMSTQLEQAGVTIEEGYLIAHLQPAPDLVVVGNAMKRGMDV 96 (524)
T ss_dssp --CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCCTTHHHHHHHTTCEEEESCCGGGGCSCCSEEEECTTCCTTSHH
T ss_pred ecCCEEEEEEecHhhHHHHHHHHHhCCCEEEEECCCCCcHHHHHHHHCCCEEECCCCHHHcCCCCCEEEECCCcCCCCHH
Confidence 45789999999999997 788899999999999986522 33456687643 344555789999885 3322 22
Q ss_pred c-------cccccHhH-hcc--CCCce-EEEEccCCccccHHHHHHhHhc
Q 007512 265 T-------SKVLNDET-FGK--MKKGV-RIINVARGGVIDEEALVRALDS 303 (600)
Q Consensus 265 t-------~~li~~~~-l~~--mk~ga-ilvNvarg~ivde~aL~~aL~~ 303 (600)
. ..++.+.+ +.. +++.. +-|-=+.|+.-...-+...|+.
T Consensus 97 l~~a~~~gi~v~~~~e~l~~~~~~~~~vIaVTGTnGKTTTt~li~~iL~~ 146 (524)
T 3hn7_A 97 IEYMLDTGLRYTSGPQFLSEQVLQSRHVIAVAGTHGKTTTTTMLAWILHY 146 (524)
T ss_dssp HHHHHHHTCCEEEHHHHHHHHTGGGSEEEEEECSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCcEEEHHHHHHHHHhccCcEEEEECCCCHHHHHHHHHHHHHH
Confidence 1 12333333 332 33323 3333346887555555555554
|
| >4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes} | Back alignment and structure |
|---|
Probab=92.69 E-value=0.063 Score=57.19 Aligned_cols=85 Identities=16% Similarity=0.193 Sum_probs=54.8
Q ss_pred CEEEEEecChhHHHHHHHhhcCC---CEEEEECCCCCh-h-HHHHc------CCc--------ccCHHHHhcc--CCEEE
Q 007512 198 KTLAVLGFGKVGSEVARRAKGLG---MHVIAHDPYAPA-D-RARAI------GVD--------LVSFDEAIAT--ADFIS 256 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~g---~~V~~~d~~~~~-~-~a~~~------g~~--------~~~l~ell~~--aDvV~ 256 (600)
++|+|+|.|.||+.+++.|...| .+|.++|++... + .+.+. .+. ..++++++++ +|+|+
T Consensus 2 ~kVlIiGaGgiG~~ia~~L~~~g~~~~~V~v~~r~~~~~~~la~~l~~~~~~~~~~~~~D~~d~~~l~~~l~~~~~DvVi 81 (405)
T 4ina_A 2 AKVLQIGAGGVGGVVAHKMAMNREVFSHITLASRTLSKCQEIAQSIKAKGYGEIDITTVDADSIEELVALINEVKPQIVL 81 (405)
T ss_dssp CEEEEECCSHHHHHHHHHHHTCTTTCCEEEEEESCHHHHHHHHHHHHHTTCCCCEEEECCTTCHHHHHHHHHHHCCSEEE
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCceEEEEEECCHHHHHHHHHHhhhhcCCceEEEEecCCCHHHHHHHHHhhCCCEEE
Confidence 58999999999999999999877 499999887522 1 12221 121 1236677877 89999
Q ss_pred EecCCCccccccccHhHhccCCCceEEEEcc
Q 007512 257 LHMPLTPATSKVLNDETFGKMKKGVRIINVA 287 (600)
Q Consensus 257 l~~Pl~~~t~~li~~~~l~~mk~gailvNva 287 (600)
.++|... ...++ -..++.|.-++|++
T Consensus 82 n~ag~~~-~~~v~----~a~l~~g~~vvD~a 107 (405)
T 4ina_A 82 NIALPYQ-DLTIM----EACLRTGVPYLDTA 107 (405)
T ss_dssp ECSCGGG-HHHHH----HHHHHHTCCEEESS
T ss_pred ECCCccc-ChHHH----HHHHHhCCCEEEec
Confidence 9988332 11111 12234566677764
|
| >2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=92.65 E-value=0.11 Score=53.60 Aligned_cols=44 Identities=30% Similarity=0.348 Sum_probs=35.6
Q ss_pred cCCEEEEEec-ChhHHHHHHHhhcCCCEEEEECCCC-ChhHHHHcC
Q 007512 196 VGKTLAVLGF-GKVGSEVARRAKGLGMHVIAHDPYA-PADRARAIG 239 (600)
Q Consensus 196 ~gktiGIIGl-G~IG~~vA~~l~~~g~~V~~~d~~~-~~~~a~~~g 239 (600)
.|+++.|+|. |.||..+++.++..|.+|++.+++. ..+.+++.|
T Consensus 166 ~g~~vlV~Gasg~iG~~~~~~a~~~G~~Vi~~~~~~~~~~~~~~~g 211 (343)
T 2eih_A 166 PGDDVLVMAAGSGVSVAAIQIAKLFGARVIATAGSEDKLRRAKALG 211 (343)
T ss_dssp TTCEEEECSTTSTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHT
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcC
Confidence 4889999999 9999999999999999999998764 223344444
|
| >3c8m_A Homoserine dehydrogenase; structural genomics, APC89447, PS protein structure initiative, midwest center for structural genomics; HET: MSE; 1.90A {Thermoplasma volcanium GSS1} PDB: 3jsa_A* | Back alignment and structure |
|---|
Probab=92.56 E-value=0.086 Score=54.68 Aligned_cols=105 Identities=18% Similarity=0.231 Sum_probs=61.3
Q ss_pred CEEEEEecChhHHHHHHHhhcC--------CCEEEE-ECCCCCh-hH-------HH---HcCCc--cc---CHHHHh-cc
Q 007512 198 KTLAVLGFGKVGSEVARRAKGL--------GMHVIA-HDPYAPA-DR-------AR---AIGVD--LV---SFDEAI-AT 251 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~--------g~~V~~-~d~~~~~-~~-------a~---~~g~~--~~---~l~ell-~~ 251 (600)
.+|||||+|.||+.+++.++.. +++|.+ +|++... .. +. ..++. .. ++++++ .+
T Consensus 7 irvgIiG~G~VG~~~~~~l~~~~~~~~~g~~~~vvaV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ll~~~ 86 (331)
T 3c8m_A 7 INLSIFGLGNVGLNLLRIIRSFNEENRLGLKFNVVFVADSLHSYYNERIDIGKVISYKEKGSLDSLEYESISASEALARD 86 (331)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHHHCSSSEEEEEEEEECSSCEEECTTCCHHHHHHHHHTTCGGGCCSEECCHHHHHHSS
T ss_pred EeEEEEecCHHHHHHHHHHHhChHHHhcCCcEEEEEEEECChHHhhcccChHHHhhhhccCCcccccCCCCCHHHHhCCC
Confidence 4799999999999999998643 367755 5765421 10 11 11321 12 788887 46
Q ss_pred CCEEEEecCCCccccccccHhHhccCCCceEEEEccCCccc-cHHHHHHhHhc
Q 007512 252 ADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVI-DEEALVRALDS 303 (600)
Q Consensus 252 aDvV~l~~Pl~~~t~~li~~~~l~~mk~gailvNvarg~iv-de~aL~~aL~~ 303 (600)
.|+|+.|+|.. .|...--+-....|+.|.-++-+....+. ..++|.++.++
T Consensus 87 iDvVv~~t~~~-~~~~~~~~~~~~AL~aGkhVvtanK~pla~~~~eL~~~A~~ 138 (331)
T 3c8m_A 87 FDIVVDATPAS-ADGKKELAFYKETFENGKDVVTANKSGLANFWPEIMEYARS 138 (331)
T ss_dssp CSEEEECSCCC-SSSHHHHHHHHHHHHTTCEEEECCCHHHHHHHHHHHHHHHH
T ss_pred CCEEEECCCCC-CccchHHHHHHHHHHCCCeEEecCchhhHHHHHHHHHHHHH
Confidence 89999999964 11111112233446666666655444442 23455554444
|
| >2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A* | Back alignment and structure |
|---|
Probab=92.56 E-value=0.087 Score=56.58 Aligned_cols=66 Identities=21% Similarity=0.226 Sum_probs=49.6
Q ss_pred eccCCEEEEEecChhHHHHHHHhhcCCCEEEEECCCCCh---hHHHHcCCccc---CHHHHhccCCEEEEecC
Q 007512 194 SLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPA---DRARAIGVDLV---SFDEAIATADFISLHMP 260 (600)
Q Consensus 194 ~l~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~~---~~a~~~g~~~~---~l~ell~~aDvV~l~~P 260 (600)
++.+|+|.|||+|..|.+.|+.|+..|++|.++|.+... .... .|++.. ...+.+..+|.|++.-.
T Consensus 2 ~~~~~~v~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~~~~~~~l~-~G~~~~~g~~~~~~~~~~d~vV~s~g 73 (439)
T 2x5o_A 2 DYQGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTPPGLDKLP-EAVERHTGSLNDEWLMAADLIVASPG 73 (439)
T ss_dssp CCTTCCEEEECCHHHHHHHHHHHHTTTCCCEEEESSSSCTTGGGSC-TTSCEEESSCCHHHHHTCSEEEECTT
T ss_pred CCCCCEEEEEeecHHHHHHHHHHHhCCCEEEEEECCCCcchhHHhh-CCCEEEECCCcHHHhccCCEEEeCCC
Confidence 357899999999999999999999999999999976522 2223 566542 12455668999988743
|
| >1bgv_A Glutamate dehydrogenase; oxidoreductase; HET: GLU; 1.90A {Clostridium symbiosum} SCOP: c.2.1.7 c.58.1.1 PDB: 1hrd_A 1k89_A 1aup_A 2yfh_A | Back alignment and structure |
|---|
Probab=92.55 E-value=0.22 Score=53.75 Aligned_cols=34 Identities=38% Similarity=0.629 Sum_probs=31.8
Q ss_pred ceeccCCEEEEEecChhHHHHHHHhhcCCCEEEE
Q 007512 192 GVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIA 225 (600)
Q Consensus 192 g~~l~gktiGIIGlG~IG~~vA~~l~~~g~~V~~ 225 (600)
|.++.|+++.|.|+|.+|+.+|+.|...|.+|++
T Consensus 225 G~~l~g~~v~VqG~GnVG~~~a~~L~~~GakvVa 258 (449)
T 1bgv_A 225 NDTLVGKTVALAGFGNVAWGAAKKLAELGAKAVT 258 (449)
T ss_dssp TCCSTTCEEEECCSSHHHHHHHHHHHHHTCEEEE
T ss_pred cCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEE
Confidence 5678999999999999999999999999999986
|
| >1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=92.53 E-value=0.083 Score=54.00 Aligned_cols=45 Identities=27% Similarity=0.259 Sum_probs=35.9
Q ss_pred cCCEEEEEe-cChhHHHHHHHhhcCCCEEEEECCCC-ChhHHHHcCC
Q 007512 196 VGKTLAVLG-FGKVGSEVARRAKGLGMHVIAHDPYA-PADRARAIGV 240 (600)
Q Consensus 196 ~gktiGIIG-lG~IG~~vA~~l~~~g~~V~~~d~~~-~~~~a~~~g~ 240 (600)
.|+++.|+| .|.||..+++.++..|.+|++.++.. ..+.+++.|.
T Consensus 140 ~g~~vlV~Ga~ggiG~~~~~~a~~~G~~V~~~~~~~~~~~~~~~~g~ 186 (327)
T 1qor_A 140 PDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALKAGA 186 (327)
T ss_dssp TTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHTC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCC
Confidence 488999999 79999999999999999999998764 2333444443
|
| >1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A* | Back alignment and structure |
|---|
Probab=92.53 E-value=0.16 Score=54.53 Aligned_cols=85 Identities=18% Similarity=0.191 Sum_probs=59.5
Q ss_pred cCCEEEEEecC----------hhHHHHHHHhhcCCCEEEEECCCCChhHH----HHcC--------Ccc-cCHHHHhccC
Q 007512 196 VGKTLAVLGFG----------KVGSEVARRAKGLGMHVIAHDPYAPADRA----RAIG--------VDL-VSFDEAIATA 252 (600)
Q Consensus 196 ~gktiGIIGlG----------~IG~~vA~~l~~~g~~V~~~d~~~~~~~a----~~~g--------~~~-~~l~ell~~a 252 (600)
.|++|+|+|+. .-...+++.|...|.+|.+|||+.+.... ...+ ..+ .++.+.++.|
T Consensus 312 ~~~~v~vlGlafK~~~~d~r~s~~~~i~~~L~~~g~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (436)
T 1mv8_A 312 DTRKVGLLGLSFKAGTDDLRESPLVELAEMLIGKGYELRIFDRNVEYARVHGANKEYIESKIPHVSSLLVSDLDEVVASS 391 (436)
T ss_dssp SCCEEEEECCSSSTTCCCCTTCHHHHHHHHHHHTTCEEEEECHHHHHHTTSSSCHHHHHHTSHHHHTTBCSCHHHHHHHC
T ss_pred cCCEEEEEccccCCCCCccccCcHHHHHHHHHHCCCEEEEECCCCChhhccchhhhhcccccccccccccCCHHHHHhCC
Confidence 79999999997 46788999999999999999998421110 1111 122 3678899999
Q ss_pred CEEEEecCCCccccccccHhHhccCCCceEEEEc
Q 007512 253 DFISLHMPLTPATSKVLNDETFGKMKKGVRIINV 286 (600)
Q Consensus 253 DvV~l~~Pl~~~t~~li~~~~l~~mk~gailvNv 286 (600)
|+|++++.- ++-+.+ + ...|+ +.+|+|+
T Consensus 392 d~~vi~~~~-~~~~~~-~---~~~~~-~~~i~D~ 419 (436)
T 1mv8_A 392 DVLVLGNGD-ELFVDL-V---NKTPS-GKKLVDL 419 (436)
T ss_dssp SEEEECSCC-GGGHHH-H---HSCCT-TCEEEES
T ss_pred cEEEEeCCc-HHHHhh-h---HHhcC-CCEEEEC
Confidence 999999884 322211 2 34455 5788887
|
| >3cmc_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase; microspectrophotometry, reaction intermediate, dehydrogenase phosphate binding site; HET: G3H NAD; 1.77A {Bacillus stearothermophilus} SCOP: c.2.1.3 d.81.1.1 PDB: 2gd1_O 1gd1_O* 1npt_O* 1nqa_O* 1nqo_O* 1nq5_O* 2dbv_O* 1dbv_O* 3dbv_O* 4dbv_O* | Back alignment and structure |
|---|
Probab=92.53 E-value=0.13 Score=53.57 Aligned_cols=30 Identities=30% Similarity=0.541 Sum_probs=25.6
Q ss_pred EEEEEecChhHHHHHHHhhcC-CCEEEEECC
Q 007512 199 TLAVLGFGKVGSEVARRAKGL-GMHVIAHDP 228 (600)
Q Consensus 199 tiGIIGlG~IG~~vA~~l~~~-g~~V~~~d~ 228 (600)
+|||+|+|+||+.+.|.+... .++|.+...
T Consensus 3 kVgI~G~G~iGr~l~R~l~~~~~veivain~ 33 (334)
T 3cmc_O 3 KVGINGFGRIGRNVFRAALKNPDIEVVAVND 33 (334)
T ss_dssp EEEEESCSHHHHHHHHHHTTCTTEEEEEEEC
T ss_pred EEEEECCCHHHHHHHHHHhCCCCeEEEEEeC
Confidence 799999999999999998866 688877643
|
| >3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans} | Back alignment and structure |
|---|
Probab=92.48 E-value=0.13 Score=55.50 Aligned_cols=62 Identities=18% Similarity=0.210 Sum_probs=0.0
Q ss_pred EEEEEecChhHHHHHHHhhc----------CCCEEEE-ECCCCChhHHHHcCCccc-CHHHHhc--cCCEEEEecC
Q 007512 199 TLAVLGFGKVGSEVARRAKG----------LGMHVIA-HDPYAPADRARAIGVDLV-SFDEAIA--TADFISLHMP 260 (600)
Q Consensus 199 tiGIIGlG~IG~~vA~~l~~----------~g~~V~~-~d~~~~~~~a~~~g~~~~-~l~ell~--~aDvV~l~~P 260 (600)
+|||||+|.||+.+++.++. .+.+|.+ +|++.........+..+. ++++++. +.|+|+.|+|
T Consensus 12 rIgIIG~G~VG~~~~~~L~~~~~~l~~~~g~~i~lvaV~d~~~~~~~~~~~~~~~~~d~~ell~d~diDvVve~tp 87 (444)
T 3mtj_A 12 HVGLLGLGTVGGGTLTVLRRNAEEITRRAGREIRVVRAAVRNLDKAEALAGGLPLTTNPFDVVDDPEIDIVVELIG 87 (444)
T ss_dssp EEEEECCHHHHHHHHHHHHHTHHHHHHHHSSCEEEEEEECSCHHHHHHHHTTCCEESCTHHHHTCTTCCEEEECCC
T ss_pred cEEEECCCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEECCHHHhhhhcccCcccCCHHHHhcCCCCCEEEEcCC
|
| >2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A | Back alignment and structure |
|---|
Probab=92.45 E-value=0.14 Score=49.40 Aligned_cols=68 Identities=19% Similarity=0.215 Sum_probs=48.4
Q ss_pred ccCCEEEEEe-cChhHHHHHHHhhcCCC--EEEEECCCCCh-hHHHHcCCc--------ccCHHHHhccCCEEEEecCCC
Q 007512 195 LVGKTLAVLG-FGKVGSEVARRAKGLGM--HVIAHDPYAPA-DRARAIGVD--------LVSFDEAIATADFISLHMPLT 262 (600)
Q Consensus 195 l~gktiGIIG-lG~IG~~vA~~l~~~g~--~V~~~d~~~~~-~~a~~~g~~--------~~~l~ell~~aDvV~l~~Pl~ 262 (600)
+.+|++.|.| .|.||+.+++.|...|. +|++.++.... ......++. ..+++++++.+|+|+.+....
T Consensus 16 m~~~~vlVtGasg~iG~~l~~~L~~~G~~~~V~~~~r~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vi~~ag~~ 95 (242)
T 2bka_A 16 MQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEAYKNVNQEVVDFEKLDDYASAFQGHDVGFCCLGTT 95 (242)
T ss_dssp HTCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSGGGGGCEEEECCGGGGGGGGGGGSSCSEEEECCCCC
T ss_pred hcCCeEEEECCCcHHHHHHHHHHHcCCCCCEEEEEEcCCCCccccccCCceEEecCcCCHHHHHHHhcCCCEEEECCCcc
Confidence 5688999999 69999999999998898 99999876521 111111221 123556778889998887644
|
| >3on5_A BH1974 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, oxidoreductase; 2.80A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=92.43 E-value=0.21 Score=52.45 Aligned_cols=134 Identities=16% Similarity=0.210 Sum_probs=87.5
Q ss_pred CCEEEEEecChhHHHHHHHhhcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEecCCCccccccccHhHhcc
Q 007512 197 GKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPADRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVLNDETFGK 276 (600)
Q Consensus 197 gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Pl~~~t~~li~~~~l~~ 276 (600)
--++-|+|.|.+|+.+++.++.+|++|.++|++... + + .+-++.+|-++...| .+.+..
T Consensus 199 ~~~L~I~GaGhva~aLa~la~~lgf~V~v~D~R~~~--~--------~-~~~fp~a~~v~~~~p----------~~~~~~ 257 (362)
T 3on5_A 199 KERLIIFGAGPDVPPLVTFASNVGFYTVVTDWRPNQ--C--------E-KHFFPDADEIIVDFP----------ADFLRK 257 (362)
T ss_dssp CEEEEEECCSTTHHHHHHHHHHHTEEEEEEESCGGG--G--------C-GGGCTTCSEEEESCH----------HHHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEECCCccc--c--------c-cccCCCceEEecCCH----------HHHHhh
Confidence 347999999999999999999999999999987521 1 0 122456776655444 222333
Q ss_pred --CCCceEEEEccCCccccHHHHHHhHhcC--CceEEEEec-----cCCCCCCCCCccccCCcEEEcC---CCCCCcHHH
Q 007512 277 --MKKGVRIINVARGGVIDEEALVRALDSG--RVAQAALDV-----FTEEPPPADSKLVQHERVTVTP---HLGASTMEA 344 (600)
Q Consensus 277 --mk~gailvNvarg~ivde~aL~~aL~~g--~i~ga~lDv-----~~~EP~~~~~~L~~~~nvilTP---H~~~~t~ea 344 (600)
+.++..++=+.++.-.|...|..+|+.. +|+-.|+-. .... ....+ +-+| .+|+.|.
T Consensus 258 ~~~~~~t~vvv~TH~h~~D~~~L~~aL~~~~~YiG~iGSr~R~~rl~~~g--------~~~~r-i~~PIGL~Iga~tP-- 326 (362)
T 3on5_A 258 FLIRPDDFVLIMTHHFQKDQEILHFLLEKELRYIGILGSKERTRRLLQNR--------KPPDH-LYSPVGLSIDAQGP-- 326 (362)
T ss_dssp SCCCTTCEEEECCSCHHHHHHHHHHHSSSCCSEEEESSCHHHHHHHHTSC--------CCCTT-EESSCSCCSCCCSH--
T ss_pred cCCCCCeEEEEEeCCchhhHHHHHHHhcCCCCEEEEeCCHHHHHHHHhcC--------CcHhh-eECCCCCCCCCCCH--
Confidence 5677888888888888888888888774 332222211 1111 00122 4555 3556776
Q ss_pred HHHHHHHHHHHHHHHHcCC
Q 007512 345 QEGVAIEIAEAVVGALKGE 363 (600)
Q Consensus 345 ~~~~~~~~~~~l~~~l~g~ 363 (600)
+.++..++-+|....++.
T Consensus 327 -~EIAvSI~AEiia~~~~~ 344 (362)
T 3on5_A 327 -EEIAISIVAQLIQLIRSR 344 (362)
T ss_dssp -HHHHHHHHHHHHHHHHHS
T ss_pred -HHHHHHHHHHHHHHHhCC
Confidence 456788888888888776
|
| >3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A* | Back alignment and structure |
|---|
Probab=92.41 E-value=0.38 Score=47.25 Aligned_cols=38 Identities=26% Similarity=0.385 Sum_probs=33.2
Q ss_pred eeccCCEEEEEec-Ch--hHHHHHHHhhcCCCEEEEECCCC
Q 007512 193 VSLVGKTLAVLGF-GK--VGSEVARRAKGLGMHVIAHDPYA 230 (600)
Q Consensus 193 ~~l~gktiGIIGl-G~--IG~~vA~~l~~~g~~V~~~d~~~ 230 (600)
.++.||++.|.|. |. ||+.+|+.|...|++|+..++..
T Consensus 3 ~~l~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~ 43 (266)
T 3oig_A 3 FSLEGRNIVVMGVANKRSIAWGIARSLHEAGARLIFTYAGE 43 (266)
T ss_dssp SCCTTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSG
T ss_pred cccCCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEecCch
Confidence 3678999999997 45 99999999999999999987764
|
| >2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=92.40 E-value=0.083 Score=55.78 Aligned_cols=92 Identities=20% Similarity=0.180 Sum_probs=60.4
Q ss_pred cCCEEEEEecChhHHHHHHHhhcCCC-EEEEECCCC-ChhHHHHcCCccc-----CH-HHHhc------cCCEEEEecCC
Q 007512 196 VGKTLAVLGFGKVGSEVARRAKGLGM-HVIAHDPYA-PADRARAIGVDLV-----SF-DEAIA------TADFISLHMPL 261 (600)
Q Consensus 196 ~gktiGIIGlG~IG~~vA~~l~~~g~-~V~~~d~~~-~~~~a~~~g~~~~-----~l-~ell~------~aDvV~l~~Pl 261 (600)
.|++|.|+|.|.||...++.++.+|. +|++.|++. ..+.++++|+..+ ++ .+.+. ..|+|+-++..
T Consensus 185 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~i~~~~~~~~~~~~~~~~~g~g~Dvvid~~g~ 264 (398)
T 2dph_A 185 PGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPERLKLLSDAGFETIDLRNSAPLRDQIDQILGKPEVDCGVDAVGF 264 (398)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHTTTCEEEETTSSSCHHHHHHHHHSSSCEEEEEECSCT
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCcEEcCCCcchHHHHHHHHhCCCCCCEEEECCCC
Confidence 48899999999999999999999998 999999765 3456667776422 11 22111 46888777763
Q ss_pred Ccc----------ccccccHhHhccCCCceEEEEccC
Q 007512 262 TPA----------TSKVLNDETFGKMKKGVRIINVAR 288 (600)
Q Consensus 262 ~~~----------t~~li~~~~l~~mk~gailvNvar 288 (600)
... .... -...+..++++..++.++-
T Consensus 265 ~~~~~~~~~~~~~~~~~-~~~~~~~l~~gG~iv~~G~ 300 (398)
T 2dph_A 265 EAHGLGDEANTETPNGA-LNSLFDVVRAGGAIGIPGI 300 (398)
T ss_dssp TCBCSGGGTTSBCTTHH-HHHHHHHEEEEEEEECCSC
T ss_pred ccccccccccccccHHH-HHHHHHHHhcCCEEEEecc
Confidence 210 0001 1334556777777777653
|
| >3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A* | Back alignment and structure |
|---|
Probab=92.35 E-value=0.27 Score=51.35 Aligned_cols=88 Identities=14% Similarity=0.100 Sum_probs=57.2
Q ss_pred ccCCEEEEEec-ChhHHHHHHHhhcCCCEEEEECCCCChhHHHHcCCccc------CHHHHh-----ccCCEEEEecCCC
Q 007512 195 LVGKTLAVLGF-GKVGSEVARRAKGLGMHVIAHDPYAPADRARAIGVDLV------SFDEAI-----ATADFISLHMPLT 262 (600)
Q Consensus 195 l~gktiGIIGl-G~IG~~vA~~l~~~g~~V~~~d~~~~~~~a~~~g~~~~------~l~ell-----~~aDvV~l~~Pl~ 262 (600)
-.|++|.|+|. |.+|...++.++..|.+|++.......+.++++|...+ ++.+.+ ...|+++-|+...
T Consensus 163 ~~g~~VlV~Ga~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~v~~~t~g~~d~v~d~~g~~ 242 (371)
T 3gqv_A 163 SKPVYVLVYGGSTATATVTMQMLRLSGYIPIATCSPHNFDLAKSRGAEEVFDYRAPNLAQTIRTYTKNNLRYALDCITNV 242 (371)
T ss_dssp SSCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECGGGHHHHHHTTCSEEEETTSTTHHHHHHHHTTTCCCEEEESSCSH
T ss_pred CCCcEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCHHHHHHHHHcCCcEEEECCCchHHHHHHHHccCCccEEEECCCch
Confidence 46899999999 89999999999999999988752224566777876421 222222 1267777766521
Q ss_pred ccccccccHhHhccC-CCceEEEEcc
Q 007512 263 PATSKVLNDETFGKM-KKGVRIINVA 287 (600)
Q Consensus 263 ~~t~~li~~~~l~~m-k~gailvNva 287 (600)
. + -...+..| +++..++.++
T Consensus 243 ~-~----~~~~~~~l~~~~G~iv~~g 263 (371)
T 3gqv_A 243 E-S----TTFCFAAIGRAGGHYVSLN 263 (371)
T ss_dssp H-H----HHHHHHHSCTTCEEEEESS
T ss_pred H-H----HHHHHHHhhcCCCEEEEEe
Confidence 1 1 12334455 4666777665
|
| >2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria} | Back alignment and structure |
|---|
Probab=92.32 E-value=0.18 Score=48.00 Aligned_cols=47 Identities=15% Similarity=0.113 Sum_probs=37.1
Q ss_pred cEEEEEecCCCCChhhHHhhhhcCCccccceEeeeecCCCcEEEEEEeC
Q 007512 527 SIILCRQVDQPGMIGTVGSILGSENVNVSFMSVGRVAPRKHAVMAIGVD 575 (600)
Q Consensus 527 ~~Liv~~~D~pG~Ia~V~~iL~~~~INIa~m~v~R~~~g~~al~~i~~D 575 (600)
..|.+..+|+||+++.|++.|+++|.||...+... .. +.-.|++.++
T Consensus 6 ~~ltv~~~DrpGiva~vs~~La~~g~NI~da~q~~-~~-~~f~m~~~v~ 52 (195)
T 2nyi_A 6 FVVSVAGSDRVGIVHDFSWALKNISANVESSRMAC-LG-GDFAMIVLVS 52 (195)
T ss_dssp EEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEE-ET-TEEEEEEEEE
T ss_pred EEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEEeEE-EC-CeEEEEEEEE
Confidence 45677789999999999999999999999999885 33 3433355554
|
| >1ebf_A Homoserine dehydrogenase; dinucleotide, NAD, dimer, oxidoreductase; HET: NAD; 2.30A {Saccharomyces cerevisiae} SCOP: c.2.1.3 d.81.1.2 PDB: 1ebu_A* 1tve_A* 1q7g_A* | Back alignment and structure |
|---|
Probab=92.24 E-value=0.081 Score=55.55 Aligned_cols=30 Identities=23% Similarity=0.426 Sum_probs=24.2
Q ss_pred EEEEEecChhHHHHHHHhhcC----CCEEEE-ECC
Q 007512 199 TLAVLGFGKVGSEVARRAKGL----GMHVIA-HDP 228 (600)
Q Consensus 199 tiGIIGlG~IG~~vA~~l~~~----g~~V~~-~d~ 228 (600)
+|||||+|.||+.+++.++.. +++|.+ +|.
T Consensus 6 ~vgIiG~G~VG~~~~~~l~~~~~g~~~~vvaV~d~ 40 (358)
T 1ebf_A 6 NVAVIGAGVVGSAFLDQLLAMKSTITYNLVLLAEA 40 (358)
T ss_dssp EEEEECCSHHHHHHHHHHHHCCCSSEEEEEEEECS
T ss_pred EEEEEecCHHHHHHHHHHHhcCCCCCEEEEEEEEC
Confidence 799999999999999999864 356655 464
|
| >1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A* | Back alignment and structure |
|---|
Probab=92.15 E-value=0.19 Score=48.32 Aligned_cols=67 Identities=18% Similarity=0.090 Sum_probs=47.8
Q ss_pred cCCEEEEEe-cChhHHHHHHHhhcC--CCEEEEECCCCChhHHHHcCCcc--------cCHHHHhccCCEEEEecCCC
Q 007512 196 VGKTLAVLG-FGKVGSEVARRAKGL--GMHVIAHDPYAPADRARAIGVDL--------VSFDEAIATADFISLHMPLT 262 (600)
Q Consensus 196 ~gktiGIIG-lG~IG~~vA~~l~~~--g~~V~~~d~~~~~~~a~~~g~~~--------~~l~ell~~aDvV~l~~Pl~ 262 (600)
.+++|.|.| .|.||+.+++.|... |++|++.++..........++.. .+++++++.+|+|+.+....
T Consensus 3 ~~~~ilVtGasG~iG~~l~~~l~~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vi~~a~~~ 80 (253)
T 1xq6_A 3 NLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKIGGEADVFIGDITDADSINPAFQGIDALVILTSAV 80 (253)
T ss_dssp SCCEEEEESTTSHHHHHHHHHHHHTTTTCEEEEEESCHHHHHHTTCCTTEEECCTTSHHHHHHHHTTCSEEEECCCCC
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHhcCCCcEEEEEEcCCCchhhcCCCeeEEEecCCCHHHHHHHHcCCCEEEEecccc
Confidence 578999998 699999999999987 89999998764221111112221 13567788899998887643
|
| >1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A* | Back alignment and structure |
|---|
Probab=92.12 E-value=0.13 Score=53.28 Aligned_cols=95 Identities=22% Similarity=0.241 Sum_probs=59.1
Q ss_pred cCCEEEEEe-cChhHHHHHHHhhcCCCEEEEECCCCChh---HHHH-cCC-----c-cc---CHHHHhccCCEEEEecCC
Q 007512 196 VGKTLAVLG-FGKVGSEVARRAKGLGMHVIAHDPYAPAD---RARA-IGV-----D-LV---SFDEAIATADFISLHMPL 261 (600)
Q Consensus 196 ~gktiGIIG-lG~IG~~vA~~l~~~g~~V~~~d~~~~~~---~a~~-~g~-----~-~~---~l~ell~~aDvV~l~~Pl 261 (600)
.+++|.|.| .|.||+.+++.|...|++|++.++..+.. .... .++ + .. ++.++++.+|+|+.++..
T Consensus 4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~l~~~~~v~~v~~D~l~d~~~l~~~~~~~d~Vi~~a~~ 83 (352)
T 1xgk_A 4 QKKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGLIAEELQAIPNVTLFQGPLLNNVPLMDTLFEGAHLAFINTTS 83 (352)
T ss_dssp CCCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSCSHHHHHHHTSTTEEEEESCCTTCHHHHHHHHTTCSEEEECCCS
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCChhhHHHHhhcCCcEEEECCccCCHHHHHHHHhcCCEEEEcCCC
Confidence 367899998 59999999999998899999988765322 1111 132 2 21 256778999999977653
Q ss_pred CccccccccHhHhccCCC-c--eEEEEccCCc
Q 007512 262 TPATSKVLNDETFGKMKK-G--VRIINVARGG 290 (600)
Q Consensus 262 ~~~t~~li~~~~l~~mk~-g--ailvNvarg~ 290 (600)
............+..+++ | ..||+++...
T Consensus 84 ~~~~~~~~~~~l~~aa~~~g~v~~~V~~SS~~ 115 (352)
T 1xgk_A 84 QAGDEIAIGKDLADAAKRAGTIQHYIYSSMPD 115 (352)
T ss_dssp TTSCHHHHHHHHHHHHHHHSCCSEEEEEECCC
T ss_pred CCcHHHHHHHHHHHHHHHcCCccEEEEeCCcc
Confidence 311111222333333332 3 3788887643
|
| >3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=92.04 E-value=0.19 Score=51.86 Aligned_cols=85 Identities=19% Similarity=0.205 Sum_probs=56.1
Q ss_pred CCEEEEE-ecChhHHHHHHHhhcCCCEEEEECCCC-ChhHHHHcCCccc------CHHHHh------ccCCEEEEecCCC
Q 007512 197 GKTLAVL-GFGKVGSEVARRAKGLGMHVIAHDPYA-PADRARAIGVDLV------SFDEAI------ATADFISLHMPLT 262 (600)
Q Consensus 197 gktiGII-GlG~IG~~vA~~l~~~g~~V~~~d~~~-~~~~a~~~g~~~~------~l~ell------~~aDvV~l~~Pl~ 262 (600)
++++.|. |.|.||...++.++..|.+|++.+++. ..+.++++|...+ ++.+.+ ...|+|+-|+..
T Consensus 165 ~~~vli~gg~g~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~v~~~~~~~g~D~vid~~g~- 243 (349)
T 3pi7_A 165 EKAFVMTAGASQLCKLIIGLAKEEGFRPIVTVRRDEQIALLKDIGAAHVLNEKAPDFEATLREVMKAEQPRIFLDAVTG- 243 (349)
T ss_dssp CSEEEESSTTSHHHHHHHHHHHHHTCEEEEEESCGGGHHHHHHHTCSEEEETTSTTHHHHHHHHHHHHCCCEEEESSCH-
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCCEEEECCcHHHHHHHHHHhcCCCCcEEEECCCC-
Confidence 3677665 999999999999999999999998765 4566677776421 222211 246777766641
Q ss_pred ccccccccHhHhccCCCceEEEEcc
Q 007512 263 PATSKVLNDETFGKMKKGVRIINVA 287 (600)
Q Consensus 263 ~~t~~li~~~~l~~mk~gailvNva 287 (600)
+. + ...+..|+++..++.++
T Consensus 244 ~~----~-~~~~~~l~~~G~iv~~G 263 (349)
T 3pi7_A 244 PL----A-SAIFNAMPKRARWIIYG 263 (349)
T ss_dssp HH----H-HHHHHHSCTTCEEEECC
T ss_pred hh----H-HHHHhhhcCCCEEEEEe
Confidence 11 1 34555667777776665
|
| >4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A* | Back alignment and structure |
|---|
Probab=91.97 E-value=0.16 Score=51.78 Aligned_cols=66 Identities=20% Similarity=0.181 Sum_probs=46.4
Q ss_pred ceeccCCEEEEEec-ChhHHHHHHHhhcCCCEEEEECCCCChhHHHHcCCcc--------cCHHHHhccCCEEEEecCCC
Q 007512 192 GVSLVGKTLAVLGF-GKVGSEVARRAKGLGMHVIAHDPYAPADRARAIGVDL--------VSFDEAIATADFISLHMPLT 262 (600)
Q Consensus 192 g~~l~gktiGIIGl-G~IG~~vA~~l~~~g~~V~~~d~~~~~~~a~~~g~~~--------~~l~ell~~aDvV~l~~Pl~ 262 (600)
.....+|+|.|.|. |.||+.+++.|...|++|++.++.... .++.. .++++++..+|+|+.+....
T Consensus 14 ~~~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~-----~~~~~~~~Dl~d~~~~~~~~~~~d~vih~A~~~ 88 (347)
T 4id9_A 14 LVPRGSHMILVTGSAGRVGRAVVAALRTQGRTVRGFDLRPSG-----TGGEEVVGSLEDGQALSDAIMGVSAVLHLGAFM 88 (347)
T ss_dssp -------CEEEETTTSHHHHHHHHHHHHTTCCEEEEESSCCS-----SCCSEEESCTTCHHHHHHHHTTCSEEEECCCCC
T ss_pred ccccCCCEEEEECCCChHHHHHHHHHHhCCCEEEEEeCCCCC-----CCccEEecCcCCHHHHHHHHhCCCEEEECCccc
Confidence 35788999999997 999999999999999999999876532 22221 13667888999998877644
|
| >4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=91.97 E-value=0.19 Score=52.32 Aligned_cols=46 Identities=22% Similarity=0.393 Sum_probs=37.9
Q ss_pred cCCEEEEEe-cChhHHHHHHHhhc-CCCEEEEECCCC-ChhHHHHcCCc
Q 007512 196 VGKTLAVLG-FGKVGSEVARRAKG-LGMHVIAHDPYA-PADRARAIGVD 241 (600)
Q Consensus 196 ~gktiGIIG-lG~IG~~vA~~l~~-~g~~V~~~d~~~-~~~~a~~~g~~ 241 (600)
.|++|.|+| .|.+|...++.++. .|.+|++.++.. ..+.++++|..
T Consensus 171 ~g~~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~~~~~~~~~~~~~~lGad 219 (363)
T 4dvj_A 171 AAPAILIVGGAGGVGSIAVQIARQRTDLTVIATASRPETQEWVKSLGAH 219 (363)
T ss_dssp SEEEEEEESTTSHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHTTCS
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHcCCC
Confidence 588999999 99999999999997 599999999875 34556666653
|
| >3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=91.93 E-value=0.1 Score=49.72 Aligned_cols=65 Identities=14% Similarity=0.118 Sum_probs=46.3
Q ss_pred CEEEEEe-cChhHHHHHHHhhcCCCEEEEECCCCChhHHHHcCC-----cc----cCHHHHhccCCEEEEecCCCc
Q 007512 198 KTLAVLG-FGKVGSEVARRAKGLGMHVIAHDPYAPADRARAIGV-----DL----VSFDEAIATADFISLHMPLTP 263 (600)
Q Consensus 198 ktiGIIG-lG~IG~~vA~~l~~~g~~V~~~d~~~~~~~a~~~g~-----~~----~~l~ell~~aDvV~l~~Pl~~ 263 (600)
++|.|.| .|.||+.+++.|...|++|++.++........ .++ .. .++.++++.+|+|+.+.....
T Consensus 1 M~ilItGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~-~~~~~~~~D~~d~~~~~~~~~~~~d~vi~~ag~~~ 75 (219)
T 3dqp_A 1 MKIFIVGSTGRVGKSLLKSLSTTDYQIYAGARKVEQVPQY-NNVKAVHFDVDWTPEEMAKQLHGMDAIINVSGSGG 75 (219)
T ss_dssp CEEEEESTTSHHHHHHHHHHTTSSCEEEEEESSGGGSCCC-TTEEEEECCTTSCHHHHHTTTTTCSEEEECCCCTT
T ss_pred CeEEEECCCCHHHHHHHHHHHHCCCEEEEEECCccchhhc-CCceEEEecccCCHHHHHHHHcCCCEEEECCcCCC
Confidence 3788998 89999999999999999999998775221100 122 11 235567788999988877543
|
| >3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A* | Back alignment and structure |
|---|
Probab=91.93 E-value=0.12 Score=53.14 Aligned_cols=87 Identities=21% Similarity=0.168 Sum_probs=56.4
Q ss_pred cCCEEEEEecChhHHHHHHHhhcC-CCEEEEECCCC-ChhHHHHcCCccc-----CHHH----Hhc--cCCEEEEecCCC
Q 007512 196 VGKTLAVLGFGKVGSEVARRAKGL-GMHVIAHDPYA-PADRARAIGVDLV-----SFDE----AIA--TADFISLHMPLT 262 (600)
Q Consensus 196 ~gktiGIIGlG~IG~~vA~~l~~~-g~~V~~~d~~~-~~~~a~~~g~~~~-----~l~e----ll~--~aDvV~l~~Pl~ 262 (600)
.|.++.|+|.|.+|...++.++.. |.+|++.|... ..+.++++|...+ ++.+ +.. ..|+|+-++...
T Consensus 171 ~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~v~~~t~g~g~d~v~d~~G~~ 250 (345)
T 3jv7_A 171 PGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRLALAREVGADAAVKSGAGAADAIRELTGGQGATAVFDFVGAQ 250 (345)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHTTCSEEEECSTTHHHHHHHHHGGGCEEEEEESSCCH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCCEEEcCCCcHHHHHHHHhCCCCCeEEEECCCCH
Confidence 488999999999999999999977 78999998776 4566777776421 1111 111 456666665521
Q ss_pred ccccccccHhHhccCCCceEEEEcc
Q 007512 263 PATSKVLNDETFGKMKKGVRIINVA 287 (600)
Q Consensus 263 ~~t~~li~~~~l~~mk~gailvNva 287 (600)
. .-...+..++++..++.++
T Consensus 251 ~-----~~~~~~~~l~~~G~iv~~G 270 (345)
T 3jv7_A 251 S-----TIDTAQQVVAVDGHISVVG 270 (345)
T ss_dssp H-----HHHHHHHHEEEEEEEEECS
T ss_pred H-----HHHHHHHHHhcCCEEEEEC
Confidence 1 1123444566666666654
|
| >1s6y_A 6-phospho-beta-glucosidase; hydrolase, structural genomics, PSI, protein structure initi midwest center for structural genomics; 2.31A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.2 | Back alignment and structure |
|---|
Probab=91.89 E-value=0.28 Score=53.04 Aligned_cols=113 Identities=19% Similarity=0.189 Sum_probs=68.7
Q ss_pred CCEEEEEecChh-HHHHHHHhhc----C-CCEEEEECCCC--ChhH-----HH----HcCC----cc-cCHHHHhccCCE
Q 007512 197 GKTLAVLGFGKV-GSEVARRAKG----L-GMHVIAHDPYA--PADR-----AR----AIGV----DL-VSFDEAIATADF 254 (600)
Q Consensus 197 gktiGIIGlG~I-G~~vA~~l~~----~-g~~V~~~d~~~--~~~~-----a~----~~g~----~~-~~l~ell~~aDv 254 (600)
.++|+|||.|.. |..++..|.. + +.+|..||... .... +. ..+. .. .++.+.++.||+
T Consensus 7 ~~KIaVIGaGsv~~~al~~~L~~~~~~l~~~ev~L~Di~~~~e~~~~~~~~~~~~~~~~~~~~~i~~t~D~~eal~gAD~ 86 (450)
T 1s6y_A 7 RLKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGVPIEIHLTLDRRRALDGADF 86 (450)
T ss_dssp CEEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCSE
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCCCCCCEEEEEEcCCChHHHHHHHHHHHHHHhhcCCCcEEEEeCCHHHHhCCCCE
Confidence 358999999998 7776555543 4 56899999875 3211 11 1222 12 367889999999
Q ss_pred EEEecCCCcc---cc--------cccc----------------------HhHhccCCCceEEEEccCCccccHHHHHHhH
Q 007512 255 ISLHMPLTPA---TS--------KVLN----------------------DETFGKMKKGVRIINVARGGVIDEEALVRAL 301 (600)
Q Consensus 255 V~l~~Pl~~~---t~--------~li~----------------------~~~l~~mk~gailvNvarg~ivde~aL~~aL 301 (600)
|++++|.... ++ +++. .+.+....|+++++|++---=+-..++.+..
T Consensus 87 VVitagv~~~~~~~rd~~ip~~~g~~~~et~G~ggi~~~~rni~i~~~i~~~i~~~~P~a~ii~~tNPvdivT~a~~k~~ 166 (450)
T 1s6y_A 87 VTTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLFKGLRTIPVILDIIRDMEELCPDAWLINFTNPAGMVTEAVLRYT 166 (450)
T ss_dssp EEECCCTTHHHHHHHHHHTGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSSSHHHHHHHHHHHC
T ss_pred EEEcCCCCCCcchhhhhhhhhhcCcccccccccchHHHHhhhHHHHHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHHhC
Confidence 9999995321 11 1110 0123335689999999754333355555544
Q ss_pred hcCCceEE
Q 007512 302 DSGRVAQA 309 (600)
Q Consensus 302 ~~g~i~ga 309 (600)
...++.|.
T Consensus 167 p~~rViG~ 174 (450)
T 1s6y_A 167 KQEKVVGL 174 (450)
T ss_dssp CCCCEEEC
T ss_pred CCCCEEEe
Confidence 44467664
|
| >1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A* | Back alignment and structure |
|---|
Probab=91.88 E-value=0.046 Score=55.24 Aligned_cols=33 Identities=21% Similarity=0.293 Sum_probs=27.3
Q ss_pred CEEEEEec-ChhHHHHHHHhh-cCCCEEE-EECCCC
Q 007512 198 KTLAVLGF-GKVGSEVARRAK-GLGMHVI-AHDPYA 230 (600)
Q Consensus 198 ktiGIIGl-G~IG~~vA~~l~-~~g~~V~-~~d~~~ 230 (600)
.+|+|+|+ |+||+.+++.+. .-|+++. ++|+..
T Consensus 6 mkV~V~Ga~G~mG~~~~~~~~~~~~~elva~~d~~~ 41 (273)
T 1dih_A 6 IRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREG 41 (273)
T ss_dssp EEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTT
T ss_pred cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCc
Confidence 48999998 999999999877 4588887 577654
|
| >3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT} | Back alignment and structure |
|---|
Probab=91.86 E-value=0.11 Score=51.65 Aligned_cols=62 Identities=19% Similarity=0.282 Sum_probs=45.4
Q ss_pred cCCEEEEEecChhHHHHHHHhhcCCCEEEEECCCCChhHHHHcCCcc--------cCHHHHhcc-CCEEEEecC
Q 007512 196 VGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPADRARAIGVDL--------VSFDEAIAT-ADFISLHMP 260 (600)
Q Consensus 196 ~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~~~~a~~~g~~~--------~~l~ell~~-aDvV~l~~P 260 (600)
.+++|.|.|.|.||+.+++.|...|.+|++.++..... ..++.. .+++++++. +|+|+.+..
T Consensus 2 ~~~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~~~~---~~~~~~~~~Dl~d~~~~~~~~~~~~d~vih~a~ 72 (286)
T 3gpi_A 2 SLSKILIAGCGDLGLELARRLTAQGHEVTGLRRSAQPM---PAGVQTLIADVTRPDTLASIVHLRPEILVYCVA 72 (286)
T ss_dssp CCCCEEEECCSHHHHHHHHHHHHTTCCEEEEECTTSCC---CTTCCEEECCTTCGGGCTTGGGGCCSEEEECHH
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcccc---ccCCceEEccCCChHHHHHhhcCCCCEEEEeCC
Confidence 36789999999999999999999999999998765321 122221 134456666 999987664
|
| >2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A* | Back alignment and structure |
|---|
Probab=91.76 E-value=0.13 Score=53.32 Aligned_cols=44 Identities=14% Similarity=0.209 Sum_probs=35.4
Q ss_pred cCCEEEEEe-cChhHHHHHHHhhcCCCEEEEECCCC-ChhHHHHcC
Q 007512 196 VGKTLAVLG-FGKVGSEVARRAKGLGMHVIAHDPYA-PADRARAIG 239 (600)
Q Consensus 196 ~gktiGIIG-lG~IG~~vA~~l~~~g~~V~~~d~~~-~~~~a~~~g 239 (600)
.|+++.|+| .|.||..+++.++..|++|++.++.. ..+.+++.|
T Consensus 162 ~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~g 207 (354)
T 2j8z_A 162 AGDYVLIHAGLSGVGTAAIQLTRMAGAIPLVTAGSQKKLQMAEKLG 207 (354)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHT
T ss_pred CCCEEEEECCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcC
Confidence 488999999 79999999999999999999998764 223344444
|
| >2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11 | Back alignment and structure |
|---|
Probab=91.72 E-value=0.28 Score=44.05 Aligned_cols=59 Identities=19% Similarity=0.268 Sum_probs=41.9
Q ss_pred cEEEEEecCCCCChhhHHhhhhcCCccccceEeeeecCCCcEEEEEEeCCCCcHHHHHHHhcC
Q 007512 527 SIILCRQVDQPGMIGTVGSILGSENVNVSFMSVGRVAPRKHAVMAIGVDEQPRKETLKKIGDV 589 (600)
Q Consensus 527 ~~Liv~~~D~pG~Ia~V~~iL~~~~INIa~m~v~R~~~g~~al~~i~~D~~~~~~~l~~l~~~ 589 (600)
+.+.+.-+|+||++++|.+.|+++||||-.+...... +.+++++..++ ++.+.+.|++.
T Consensus 7 ~~i~v~v~d~~G~l~~i~~~la~~~inI~~i~~~~~~--~~~~~~~~~~d--~~~a~~~L~~~ 65 (144)
T 2f06_A 7 KQLSIFLENKSGRLTEVTEVLAKENINLSALCIAENA--DFGILRGIVSD--PDKAYKALKDN 65 (144)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHTTCCEEEEEEEECS--SCEEEEEEESC--HHHHHHHHHHT
T ss_pred EEEEEEecCCCcHHHHHHHHHHHCCCCEEEEEEEecC--CCCEEEEEeCC--HHHHHHHHHHc
Confidence 5566778999999999999999999999999886422 22455555443 24455555543
|
| >3nkl_A UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; HET: MSE GOL; 1.90A {Vibrio fischeri} | Back alignment and structure |
|---|
Probab=91.71 E-value=0.13 Score=45.66 Aligned_cols=66 Identities=20% Similarity=0.304 Sum_probs=44.4
Q ss_pred CCEEEEEecChhHHHHHHHhhcC-CCEEEEE-CCCCChhHHHHcCCccc---CHHHHhc--cCCEEEEecCCC
Q 007512 197 GKTLAVLGFGKVGSEVARRAKGL-GMHVIAH-DPYAPADRARAIGVDLV---SFDEAIA--TADFISLHMPLT 262 (600)
Q Consensus 197 gktiGIIGlG~IG~~vA~~l~~~-g~~V~~~-d~~~~~~~a~~~g~~~~---~l~ell~--~aDvV~l~~Pl~ 262 (600)
.+++.|||.|..|+.+++.++.. |+++++| |.........-.|+... ++.++++ ..|.|++++|..
T Consensus 4 ~~~vlIiGaG~~g~~l~~~l~~~~g~~vvg~~d~~~~~~g~~i~g~pV~g~~~l~~~~~~~~id~viia~~~~ 76 (141)
T 3nkl_A 4 KKKVLIYGAGSAGLQLANMLRQGKEFHPIAFIDDDRKKHKTTMQGITIYRPKYLERLIKKHCISTVLLAVPSA 76 (141)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHSSSEEEEEEECSCGGGTTCEETTEEEECGGGHHHHHHHHTCCEEEECCTTS
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCcEEEEEEECCcccCCCEecCeEEECHHHHHHHHHHCCCCEEEEeCCCC
Confidence 56899999999999999999854 8999886 65432110011233332 3555554 478999999954
|
| >3hsk_A Aspartate-semialdehyde dehydrogenase; candida albicans NADP complex, amino-acid biosynthesis; HET: NAP; 2.20A {Candida albicans} | Back alignment and structure |
|---|
Probab=91.68 E-value=0.15 Score=53.86 Aligned_cols=89 Identities=15% Similarity=0.158 Sum_probs=52.7
Q ss_pred ccCCEEEEEe-cChhHHHHHHHhhcCC-CEEEE-E-CCCC-ChhHH---------------HHcCCcccCHHHHhccCCE
Q 007512 195 LVGKTLAVLG-FGKVGSEVARRAKGLG-MHVIA-H-DPYA-PADRA---------------RAIGVDLVSFDEAIATADF 254 (600)
Q Consensus 195 l~gktiGIIG-lG~IG~~vA~~l~~~g-~~V~~-~-d~~~-~~~~a---------------~~~g~~~~~l~ell~~aDv 254 (600)
....+||||| .|.+|+++.+.|..+- +++.. + +++. -.... .+.-++..+.++.+.++|+
T Consensus 17 M~~~kVaIvGAtG~vG~ell~lL~~hp~~el~~l~aS~~saGk~~~~~~~~~~~~~~p~~~~~~~v~~~~~~~~~~~~Dv 96 (381)
T 3hsk_A 17 MSVKKAGVLGATGSVGQRFILLLSKHPEFEIHALGASSRSAGKKYKDAASWKQTETLPETEQDIVVQECKPEGNFLECDV 96 (381)
T ss_dssp -CCEEEEEETTTSHHHHHHHHHHTTCSSEEEEEEEECTTTTTSBHHHHCCCCCSSCCCHHHHTCBCEESSSCTTGGGCSE
T ss_pred CCccEEEEECCCChHHHHHHHHHHcCCCceEEEeeccccccCCCHHHhcccccccccccccccceEEeCchhhhcccCCE
Confidence 3446899999 7999999999998774 57743 3 3322 11111 1111211122225789999
Q ss_pred EEEecCCCccccccccHhHhccCCCceEEEEccC
Q 007512 255 ISLHMPLTPATSKVLNDETFGKMKKGVRIINVAR 288 (600)
Q Consensus 255 V~l~~Pl~~~t~~li~~~~l~~mk~gailvNvar 288 (600)
|++|+|... ++.+.. . ..+.|+.+||.+.
T Consensus 97 vf~alp~~~-s~~~~~-~---~~~~G~~VIDlSa 125 (381)
T 3hsk_A 97 VFSGLDADV-AGDIEK-S---FVEAGLAVVSNAK 125 (381)
T ss_dssp EEECCCHHH-HHHHHH-H---HHHTTCEEEECCS
T ss_pred EEECCChhH-HHHHHH-H---HHhCCCEEEEcCC
Confidence 999999332 222211 1 1467889999874
|
| >4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=91.67 E-value=0.12 Score=56.00 Aligned_cols=66 Identities=20% Similarity=0.259 Sum_probs=49.2
Q ss_pred CCEEEEEecChhHHHHHHHhhcCCCEEEEECCCCC-hhHH-HHcCCccc-----C---HHHH-hccCCEEEEecCCC
Q 007512 197 GKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAP-ADRA-RAIGVDLV-----S---FDEA-IATADFISLHMPLT 262 (600)
Q Consensus 197 gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~-~~~a-~~~g~~~~-----~---l~el-l~~aDvV~l~~Pl~ 262 (600)
.++|-|+|+|.+|+.+|+.|...|.+|.+.|.+.. .+.. ...++..+ + |+++ +.+||+++.+++..
T Consensus 3 ~M~iiI~G~G~vG~~la~~L~~~~~~v~vId~d~~~~~~~~~~~~~~~i~Gd~~~~~~L~~Agi~~ad~~ia~t~~D 79 (461)
T 4g65_A 3 AMKIIILGAGQVGGTLAENLVGENNDITIVDKDGDRLRELQDKYDLRVVNGHASHPDVLHEAGAQDADMLVAVTNTD 79 (461)
T ss_dssp CEEEEEECCSHHHHHHHHHTCSTTEEEEEEESCHHHHHHHHHHSSCEEEESCTTCHHHHHHHTTTTCSEEEECCSCH
T ss_pred cCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHhcCcEEEEEcCCCHHHHHhcCCCcCCEEEEEcCCh
Confidence 56899999999999999999999999999998763 2222 34565321 2 4443 78899998877743
|
| >1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=91.66 E-value=0.21 Score=49.83 Aligned_cols=64 Identities=23% Similarity=0.382 Sum_probs=47.2
Q ss_pred CCEEEEEec-ChhHHHHHHHhhcCCCEEEEECCCCC----hhHH------HHcCCccc--------CHHHHhccCCEEEE
Q 007512 197 GKTLAVLGF-GKVGSEVARRAKGLGMHVIAHDPYAP----ADRA------RAIGVDLV--------SFDEAIATADFISL 257 (600)
Q Consensus 197 gktiGIIGl-G~IG~~vA~~l~~~g~~V~~~d~~~~----~~~a------~~~g~~~~--------~l~ell~~aDvV~l 257 (600)
.++|.|.|. |.||+.+++.|...|.+|++.++..+ .+.+ ...|++.+ ++.++++.+|+|+.
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~l~~~~~~~d~vi~ 83 (308)
T 1qyc_A 4 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFKASGANIVHGSIDDHASLVEAVKNVDVVIS 83 (308)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCTTTTHHHHHHHHHHHTTTCEEECCCTTCHHHHHHHHHTCSEEEE
T ss_pred CCEEEEEcCCcHHHHHHHHHHHhCCCCEEEEECCcccccCHHHHHHHHHHHhCCCEEEEeccCCHHHHHHHHcCCCEEEE
Confidence 468999995 99999999999988999999987652 2221 12354321 35667888999988
Q ss_pred ecC
Q 007512 258 HMP 260 (600)
Q Consensus 258 ~~P 260 (600)
+++
T Consensus 84 ~a~ 86 (308)
T 1qyc_A 84 TVG 86 (308)
T ss_dssp CCC
T ss_pred CCc
Confidence 776
|
| >2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A | Back alignment and structure |
|---|
Probab=91.59 E-value=0.25 Score=49.25 Aligned_cols=64 Identities=23% Similarity=0.209 Sum_probs=48.0
Q ss_pred CCEEEEEec-ChhHHHHHHHhhcCC-CEEEEECCCCChhH---HHHcCCcc--------cCHHHHhccCCEEEEecC
Q 007512 197 GKTLAVLGF-GKVGSEVARRAKGLG-MHVIAHDPYAPADR---ARAIGVDL--------VSFDEAIATADFISLHMP 260 (600)
Q Consensus 197 gktiGIIGl-G~IG~~vA~~l~~~g-~~V~~~d~~~~~~~---a~~~g~~~--------~~l~ell~~aDvV~l~~P 260 (600)
.|+|.|.|. |.||+.+++.|...| ++|.+.++...... ....+++. .++.++++.+|+|+.+.+
T Consensus 5 ~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~R~~~~~~~~~l~~~~~~~~~~D~~d~~~l~~~~~~~d~vi~~a~ 81 (299)
T 2wm3_A 5 KKLVVVFGGTGAQGGSVARTLLEDGTFKVRVVTRNPRKKAAKELRLQGAEVVQGDQDDQVIMELALNGAYATFIVTN 81 (299)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHCSSEEEEEESCTTSHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEEECCC
T ss_pred CCEEEEECCCchHHHHHHHHHHhcCCceEEEEEcCCCCHHHHHHHHCCCEEEEecCCCHHHHHHHHhcCCEEEEeCC
Confidence 578999997 999999999998877 99999987763321 12345532 135678899999998775
|
| >1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP} | Back alignment and structure |
|---|
Probab=91.57 E-value=0.15 Score=52.15 Aligned_cols=44 Identities=27% Similarity=0.382 Sum_probs=35.3
Q ss_pred cCCEEEEEec-ChhHHHHHHHhhcCCCEEEEECCCC-ChhHHHHcC
Q 007512 196 VGKTLAVLGF-GKVGSEVARRAKGLGMHVIAHDPYA-PADRARAIG 239 (600)
Q Consensus 196 ~gktiGIIGl-G~IG~~vA~~l~~~g~~V~~~d~~~-~~~~a~~~g 239 (600)
.|+++.|+|. |.||..+++.++..|++|++.++.. ..+.+++.|
T Consensus 145 ~g~~vlV~Ga~ggiG~~~~~~a~~~G~~Vi~~~~~~~~~~~~~~~g 190 (333)
T 1wly_A 145 PGDYVLIHAAAGGMGHIMVPWARHLGATVIGTVSTEEKAETARKLG 190 (333)
T ss_dssp TTCEEEETTTTSTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHT
T ss_pred CCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcC
Confidence 4789999995 9999999999999999999998765 233344444
|
| >2ph5_A Homospermidine synthase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: NAD; 2.50A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=91.56 E-value=0.13 Score=55.73 Aligned_cols=33 Identities=21% Similarity=0.344 Sum_probs=27.0
Q ss_pred CEEEEEecChhHHHHHHHhhc-CCC---EEEEECCCC
Q 007512 198 KTLAVLGFGKVGSEVARRAKG-LGM---HVIAHDPYA 230 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~-~g~---~V~~~d~~~ 230 (600)
++|.|||+|.||+.+|+.|.. .++ +|+..|+..
T Consensus 14 ~rVlIIGaGgVG~~va~lla~~~dv~~~~I~vaD~~~ 50 (480)
T 2ph5_A 14 NRFVILGFGCVGQALMPLIFEKFDIKPSQVTIIAAEG 50 (480)
T ss_dssp SCEEEECCSHHHHHHHHHHHHHBCCCGGGEEEEESSC
T ss_pred CCEEEECcCHHHHHHHHHHHhCCCCceeEEEEeccch
Confidence 469999999999999999874 455 688888765
|
| >3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406} | Back alignment and structure |
|---|
Probab=91.51 E-value=0.16 Score=45.04 Aligned_cols=97 Identities=19% Similarity=0.150 Sum_probs=64.6
Q ss_pred CEEEEEec----ChhHHHHHHHhhcCCCEEEEECCCCChhHHHHcCCc-ccCHHHHhccCCEEEEecCCCccccccccHh
Q 007512 198 KTLAVLGF----GKVGSEVARRAKGLGMHVIAHDPYAPADRARAIGVD-LVSFDEAIATADFISLHMPLTPATSKVLNDE 272 (600)
Q Consensus 198 ktiGIIGl----G~IG~~vA~~l~~~g~~V~~~d~~~~~~~a~~~g~~-~~~l~ell~~aDvV~l~~Pl~~~t~~li~~~ 272 (600)
++|+|||. |+.|..+.+.|+.+|++|+..+|.... -.|.. +-++.++=. -|++++++| .+.+..++.+-
T Consensus 5 ~siAVVGaS~~~~~~g~~v~~~L~~~g~~V~pVnP~~~~----i~G~~~y~sl~dlp~-vDlavi~~p-~~~v~~~v~e~ 78 (122)
T 3ff4_A 5 KKTLILGATPETNRYAYLAAERLKSHGHEFIPVGRKKGE----VLGKTIINERPVIEG-VDTVTLYIN-PQNQLSEYNYI 78 (122)
T ss_dssp CCEEEETCCSCTTSHHHHHHHHHHHHTCCEEEESSSCSE----ETTEECBCSCCCCTT-CCEEEECSC-HHHHGGGHHHH
T ss_pred CEEEEEccCCCCCCHHHHHHHHHHHCCCeEEEECCCCCc----CCCeeccCChHHCCC-CCEEEEEeC-HHHHHHHHHHH
Confidence 68999998 579999999999999999999987521 13444 336777666 999999999 44455555432
Q ss_pred HhccCCCceEEEEccCCccccHHHHHHhHhcCCc
Q 007512 273 TFGKMKKGVRIINVARGGVIDEEALVRALDSGRV 306 (600)
Q Consensus 273 ~l~~mk~gailvNvarg~ivde~aL~~aL~~g~i 306 (600)
. .+...++++..| - .+ +++.+..++..+
T Consensus 79 ~--~~g~k~v~~~~G--~-~~-~e~~~~a~~~Gi 106 (122)
T 3ff4_A 79 L--SLKPKRVIFNPG--T-EN-EELEEILSENGI 106 (122)
T ss_dssp H--HHCCSEEEECTT--C-CC-HHHHHHHHHTTC
T ss_pred H--hcCCCEEEECCC--C-Ch-HHHHHHHHHcCC
Confidence 2 234446666543 2 34 445555555434
|
| >2r00_A Aspartate-semialdehyde dehydrogenase; conformational change, half-OF-sites-reactivity, protein evolution, sequence homology; HET: HTI; 2.03A {Vibrio cholerae} PDB: 2qz9_A* 2r00_C* | Back alignment and structure |
|---|
Probab=91.49 E-value=0.063 Score=55.85 Aligned_cols=86 Identities=13% Similarity=0.111 Sum_probs=50.3
Q ss_pred CEEEEEe-cChhHHHHHHHhhcC---CCEEEEECCCCChhHHHHc-C--CcccCHH-HHhccCCEEEEecCCCccccccc
Q 007512 198 KTLAVLG-FGKVGSEVARRAKGL---GMHVIAHDPYAPADRARAI-G--VDLVSFD-EAIATADFISLHMPLTPATSKVL 269 (600)
Q Consensus 198 ktiGIIG-lG~IG~~vA~~l~~~---g~~V~~~d~~~~~~~a~~~-g--~~~~~l~-ell~~aDvV~l~~Pl~~~t~~li 269 (600)
.+|+|+| .|.||+.+.+.|... .+++.++....+....... + +...+++ +.+..+|+|+.|+|... ++...
T Consensus 4 ~kV~I~GAtG~iG~~llr~L~~~~~p~~elv~i~s~~~~G~~~~~~~~~i~~~~~~~~~~~~vDvVf~a~g~~~-s~~~a 82 (336)
T 2r00_A 4 FNVAIFGATGAVGETMLEVLQEREFPVDELFLLASERSEGKTYRFNGKTVRVQNVEEFDWSQVHIALFSAGGEL-SAKWA 82 (336)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTCCEEEEEEEECTTTTTCEEEETTEEEEEEEGGGCCGGGCSEEEECSCHHH-HHHHH
T ss_pred cEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEEECCCCCCCceeecCceeEEecCChHHhcCCCEEEECCCchH-HHHHH
Confidence 5899999 999999999998754 4677765422111000000 1 1111221 24578999999998432 22221
Q ss_pred cHhHhccCCCceEEEEccC
Q 007512 270 NDETFGKMKKGVRIINVAR 288 (600)
Q Consensus 270 ~~~~l~~mk~gailvNvar 288 (600)
. ..++.|+.+||.+.
T Consensus 83 ~----~~~~~G~~vId~s~ 97 (336)
T 2r00_A 83 P----IAAEAGVVVIDNTS 97 (336)
T ss_dssp H----HHHHTTCEEEECSS
T ss_pred H----HHHHcCCEEEEcCC
Confidence 1 12456888888764
|
| >1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A* | Back alignment and structure |
|---|
Probab=91.48 E-value=0.12 Score=53.29 Aligned_cols=45 Identities=31% Similarity=0.452 Sum_probs=36.7
Q ss_pred cCCEEEEEecC-hhHHHHHHHhhcC-CCEEEEECCCC-ChhHHHHcCC
Q 007512 196 VGKTLAVLGFG-KVGSEVARRAKGL-GMHVIAHDPYA-PADRARAIGV 240 (600)
Q Consensus 196 ~gktiGIIGlG-~IG~~vA~~l~~~-g~~V~~~d~~~-~~~~a~~~g~ 240 (600)
.|+++.|+|.| .||..+++.++.. |++|++.|++. ..+.+++.|.
T Consensus 170 ~g~~vlV~Gagg~iG~~~~~~a~~~~Ga~Vi~~~~~~~~~~~~~~~g~ 217 (347)
T 1jvb_A 170 PTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGA 217 (347)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHTC
T ss_pred CCCEEEEECCCccHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCC
Confidence 47899999999 9999999999988 99999998765 3344555554
|
| >2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=91.45 E-value=0.26 Score=50.01 Aligned_cols=105 Identities=15% Similarity=0.103 Sum_probs=69.3
Q ss_pred ccCCEEEEEecChhHHHHHHHhhcCCCEEEEECCCCChhHHHHcCCccc-CHHHHhccCCEEEEecCCCc----------
Q 007512 195 LVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPADRARAIGVDLV-SFDEAIATADFISLHMPLTP---------- 263 (600)
Q Consensus 195 l~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~~~~a~~~g~~~~-~l~ell~~aDvV~l~~Pl~~---------- 263 (600)
+.|++|.++|-........+.|...|++|..+.... +...+.|.... ++.+.++++|+|+...|...
T Consensus 5 ~~~mki~v~~~~~~~~~~~~~L~~~g~~v~~~~~~~--~~~~~~g~~~~~~~~~~~~~~d~ii~~~~~~~~~~~i~s~~a 82 (300)
T 2rir_A 5 LTGLKIAVIGGDARQLEIIRKLTEQQADIYLVGFDQ--LDHGFTGAVKCNIDEIPFQQIDSIILPVSATTGEGVVSTVFS 82 (300)
T ss_dssp CCSCEEEEESBCHHHHHHHHHHHHTTCEEEEESCTT--SSCCCTTEEECCGGGSCGGGCSEEECCSSCEETTTEECBSSC
T ss_pred ccCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeccc--cccccccceeccchHHHHhcCCEEEeccccccCCcccccccc
Confidence 568899999999999999999999999998764211 11111233222 46677899999987554321
Q ss_pred cccccccHhHhccCCCceEEEEccCCccccHHHHHHhHhcCCc
Q 007512 264 ATSKVLNDETFGKMKKGVRIINVARGGVIDEEALVRALDSGRV 306 (600)
Q Consensus 264 ~t~~li~~~~l~~mk~gailvNvarg~ivde~aL~~aL~~g~i 306 (600)
.+...++++.++.++++.+|. ++ . |..++.+++.+..|
T Consensus 83 ~~~~~~~~~~l~~~~~l~~i~-~g---~-~~~d~~~~~~~~gi 120 (300)
T 2rir_A 83 NEEVVLKQDHLDRTPAHCVIF-SG---I-SNAYLENIAAQAKR 120 (300)
T ss_dssp SSCEECCHHHHHTSCTTCEEE-ES---S-CCHHHHHHHHHTTC
T ss_pred cCCccchHHHHhhcCCCCEEE-Ee---c-CCHHHHHHHHHCCC
Confidence 123347788899999988877 33 2 54554445555444
|
| >4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A | Back alignment and structure |
|---|
Probab=91.28 E-value=0.21 Score=53.45 Aligned_cols=87 Identities=21% Similarity=0.195 Sum_probs=62.3
Q ss_pred cCCEEEEEec-ChhHHHHHHHhhcCCCEEEEECCCC-ChhHHHHcCCccc-CH------------------------HH-
Q 007512 196 VGKTLAVLGF-GKVGSEVARRAKGLGMHVIAHDPYA-PADRARAIGVDLV-SF------------------------DE- 247 (600)
Q Consensus 196 ~gktiGIIGl-G~IG~~vA~~l~~~g~~V~~~d~~~-~~~~a~~~g~~~~-~l------------------------~e- 247 (600)
.|++|.|+|. |.||...++.++..|.+|++.+... ..+.++++|...+ +. ++
T Consensus 220 ~g~~VlV~GasG~iG~~a~qla~~~Ga~vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 299 (447)
T 4a0s_A 220 QGDIVLIWGASGGLGSYAIQFVKNGGGIPVAVVSSAQKEAAVRALGCDLVINRAELGITDDIADDPRRVVETGRKLAKLV 299 (447)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCCCEEEHHHHTCCTTGGGCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCCEEEecccccccccccccccccchhhhHHHHHH
Confidence 5899999998 9999999999999999999987654 3456677776421 11 11
Q ss_pred --Hh-ccCCEEEEecCCCccccccccHhHhccCCCceEEEEccC
Q 007512 248 --AI-ATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVAR 288 (600)
Q Consensus 248 --ll-~~aDvV~l~~Pl~~~t~~li~~~~l~~mk~gailvNvar 288 (600)
+. ...|+|+-++.. + .-...+..|+++..+++++.
T Consensus 300 ~~~~g~g~Dvvid~~G~-~-----~~~~~~~~l~~~G~iv~~G~ 337 (447)
T 4a0s_A 300 VEKAGREPDIVFEHTGR-V-----TFGLSVIVARRGGTVVTCGS 337 (447)
T ss_dssp HHHHSSCCSEEEECSCH-H-----HHHHHHHHSCTTCEEEESCC
T ss_pred HHHhCCCceEEEECCCc-h-----HHHHHHHHHhcCCEEEEEec
Confidence 11 247888887762 1 12445667888888888874
|
| >2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A* | Back alignment and structure |
|---|
Probab=91.25 E-value=0.13 Score=50.85 Aligned_cols=62 Identities=16% Similarity=0.231 Sum_probs=44.1
Q ss_pred EEEEEec-ChhHHHHHHHhhcC--CCEEEEECCCCCh-hHHHHcCCcc--------cCHHHHhccCCEEEEecC
Q 007512 199 TLAVLGF-GKVGSEVARRAKGL--GMHVIAHDPYAPA-DRARAIGVDL--------VSFDEAIATADFISLHMP 260 (600)
Q Consensus 199 tiGIIGl-G~IG~~vA~~l~~~--g~~V~~~d~~~~~-~~a~~~g~~~--------~~l~ell~~aDvV~l~~P 260 (600)
+|.|.|. |.||+.+++.|... |++|++.++.... ......++.. .+++++++.+|+|+.+..
T Consensus 1 ~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vi~~a~ 74 (286)
T 2zcu_A 1 MIAITGATGQLGHYVIESLMKTVPASQIVAIVRNPAKAQALAAQGITVRQADYGDEAALTSALQGVEKLLLISS 74 (286)
T ss_dssp CEEEESTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTCHHHHHTTCEEEECCTTCHHHHHHHTTTCSEEEECC-
T ss_pred CEEEEcCCchHHHHHHHHHHhhCCCceEEEEEcChHhhhhhhcCCCeEEEcCCCCHHHHHHHHhCCCEEEEeCC
Confidence 4678886 99999999999987 9999998876532 2222334422 135678889999987765
|
| >2yv1_A Succinyl-COA ligase [ADP-forming] subunit alpha; COA-binding domain, structural genomics, NPPSFA; 1.70A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=91.22 E-value=0.087 Score=53.74 Aligned_cols=100 Identities=18% Similarity=0.238 Sum_probs=61.3
Q ss_pred EEEEEec-ChhHHHHHHHhhcCCCEE-EEECCCCChhHHHHcCCcc-cCHHHHhc--cCCEEEEecCCCccccccccHhH
Q 007512 199 TLAVLGF-GKVGSEVARRAKGLGMHV-IAHDPYAPADRARAIGVDL-VSFDEAIA--TADFISLHMPLTPATSKVLNDET 273 (600)
Q Consensus 199 tiGIIGl-G~IG~~vA~~l~~~g~~V-~~~d~~~~~~~a~~~g~~~-~~l~ell~--~aDvV~l~~Pl~~~t~~li~~~~ 273 (600)
++.|+|. |++|+.+++.++..|+++ ...+|...... -.|+.. .+++++.. .+|++++++| .+.+...+.+ .
T Consensus 15 ~v~V~Gasg~~G~~~~~~l~~~g~~~V~~VnP~~~g~~--i~G~~vy~sl~el~~~~~~Dv~ii~vp-~~~~~~~v~e-a 90 (294)
T 2yv1_A 15 KAIVQGITGRQGSFHTKKMLECGTKIVGGVTPGKGGQN--VHGVPVFDTVKEAVKETDANASVIFVP-APFAKDAVFE-A 90 (294)
T ss_dssp CEEEETTTSHHHHHHHHHHHHTTCCEEEEECTTCTTCE--ETTEEEESSHHHHHHHHCCCEEEECCC-HHHHHHHHHH-H
T ss_pred EEEEECCCCCHHHHHHHHHHhCCCeEEEEeCCCCCCce--ECCEeeeCCHHHHhhcCCCCEEEEccC-HHHHHHHHHH-H
Confidence 5788899 999999999999888873 35677542111 146653 47999988 8999999999 3333333322 2
Q ss_pred hccCCCceEEEEccCCc-cccHHHHHHhHhcC
Q 007512 274 FGKMKKGVRIINVARGG-VIDEEALVRALDSG 304 (600)
Q Consensus 274 l~~mk~gailvNvarg~-ivde~aL~~aL~~g 304 (600)
.+ .+... +|..+.|= ..+++.+.++.++.
T Consensus 91 ~~-~Gi~~-vVi~t~G~~~~~~~~l~~~A~~~ 120 (294)
T 2yv1_A 91 ID-AGIEL-IVVITEHIPVHDTMEFVNYAEDV 120 (294)
T ss_dssp HH-TTCSE-EEECCSCCCHHHHHHHHHHHHHH
T ss_pred HH-CCCCE-EEEECCCCCHHHHHHHHHHHHHc
Confidence 22 22222 33343332 12455677666653
|
| >1p3d_A UDP-N-acetylmuramate--alanine ligase; alpha/beta protein; HET: UMA ANP; 1.70A {Haemophilus influenzae} SCOP: c.5.1.1 c.59.1.1 c.72.2.1 PDB: 1gqq_A* 1p31_A* 1gqy_A* | Back alignment and structure |
|---|
Probab=91.12 E-value=0.19 Score=54.49 Aligned_cols=61 Identities=18% Similarity=0.265 Sum_probs=47.0
Q ss_pred CCEEEEEecChhHHH-HHHHhhcCCCEEEEECCCCCh--hHHHHcCCccc---CHHHHhccCCEEEEe
Q 007512 197 GKTLAVLGFGKVGSE-VARRAKGLGMHVIAHDPYAPA--DRARAIGVDLV---SFDEAIATADFISLH 258 (600)
Q Consensus 197 gktiGIIGlG~IG~~-vA~~l~~~g~~V~~~d~~~~~--~~a~~~g~~~~---~l~ell~~aDvV~l~ 258 (600)
-|+|.|||+|.+|.+ +|+.|+..|++|.++|...+. +...+.|+... .. +.+..+|+|++.
T Consensus 18 ~~~i~viG~G~sG~s~~A~~l~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~g~~~-~~~~~a~~vv~s 84 (475)
T 1p3d_A 18 VQQIHFIGIGGAGMSGIAEILLNEGYQISGSDIADGVVTQRLAQAGAKIYIGHAE-EHIEGASVVVVS 84 (475)
T ss_dssp CCEEEEETTTSTTHHHHHHHHHHHTCEEEEEESCCSHHHHHHHHTTCEEEESCCG-GGGTTCSEEEEC
T ss_pred CCEEEEEeecHHHHHHHHHHHHhCCCEEEEECCCCCHHHHHHHhCCCEEECCCCH-HHcCCCCEEEEC
Confidence 468999999999998 999999999999999987643 23345676542 23 345789999885
|
| >3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A* | Back alignment and structure |
|---|
Probab=91.09 E-value=0.3 Score=49.80 Aligned_cols=68 Identities=18% Similarity=0.236 Sum_probs=48.5
Q ss_pred eccCCEEEEEe-cChhHHHHHHHhhcCCCEEEEECCCCC--hhHHH---H-------cCCcc--------cCHHHHhccC
Q 007512 194 SLVGKTLAVLG-FGKVGSEVARRAKGLGMHVIAHDPYAP--ADRAR---A-------IGVDL--------VSFDEAIATA 252 (600)
Q Consensus 194 ~l~gktiGIIG-lG~IG~~vA~~l~~~g~~V~~~d~~~~--~~~a~---~-------~g~~~--------~~l~ell~~a 252 (600)
.+.+++|.|.| .|.||+.+++.|...|.+|++.++... ..... . .++.. .+++++++.+
T Consensus 22 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~ 101 (351)
T 3ruf_A 22 IFSPKTWLITGVAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDIRDLTTCEQVMKGV 101 (351)
T ss_dssp HHSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHTSCHHHHTTEEEEECCTTCHHHHHHHTTTC
T ss_pred CCCCCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhhhhhhccccccCCceEEEEccCCCHHHHHHHhcCC
Confidence 45689999999 599999999999999999999987652 11111 1 23321 1255677888
Q ss_pred CEEEEecCC
Q 007512 253 DFISLHMPL 261 (600)
Q Consensus 253 DvV~l~~Pl 261 (600)
|+|+-+...
T Consensus 102 d~Vih~A~~ 110 (351)
T 3ruf_A 102 DHVLHQAAL 110 (351)
T ss_dssp SEEEECCCC
T ss_pred CEEEECCcc
Confidence 888777653
|
| >2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa} | Back alignment and structure |
|---|
Probab=91.06 E-value=0.2 Score=50.04 Aligned_cols=65 Identities=18% Similarity=0.262 Sum_probs=47.1
Q ss_pred CCEEEEEec-ChhHHHHHHHhhcCCCEEEEECCCC----Ch-hHH------HHcCCccc--------CHHHHhccCCEEE
Q 007512 197 GKTLAVLGF-GKVGSEVARRAKGLGMHVIAHDPYA----PA-DRA------RAIGVDLV--------SFDEAIATADFIS 256 (600)
Q Consensus 197 gktiGIIGl-G~IG~~vA~~l~~~g~~V~~~d~~~----~~-~~a------~~~g~~~~--------~l~ell~~aDvV~ 256 (600)
+++|.|.|. |.||+.+++.|...|++|++.++.. .. +.+ ...+++.+ ++.++++.+|+|+
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~l~~~~~~~d~vi 81 (307)
T 2gas_A 2 ENKILILGPTGAIGRHIVWASIKAGNPTYALVRKTITAANPETKEELIDNYQSLGVILLEGDINDHETLVKAIKQVDIVI 81 (307)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHHTCCEEEEECCSCCSSCHHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEE
T ss_pred CcEEEEECCCchHHHHHHHHHHhCCCcEEEEECCCcccCChHHHHHHHHHHHhCCCEEEEeCCCCHHHHHHHHhCCCEEE
Confidence 578999995 9999999999998899999987764 11 211 12455321 3567788899998
Q ss_pred EecCC
Q 007512 257 LHMPL 261 (600)
Q Consensus 257 l~~Pl 261 (600)
.+++.
T Consensus 82 ~~a~~ 86 (307)
T 2gas_A 82 CAAGR 86 (307)
T ss_dssp ECSSS
T ss_pred ECCcc
Confidence 87764
|
| >3r3j_A Glutamate dehydrogenase; rossman fold, oxidoreductase, apicoplast; 3.10A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=90.99 E-value=0.65 Score=50.02 Aligned_cols=36 Identities=25% Similarity=0.260 Sum_probs=32.0
Q ss_pred ceeccCCEEEEEecChhHHHHHHHhhcCCCEEE-EEC
Q 007512 192 GVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVI-AHD 227 (600)
Q Consensus 192 g~~l~gktiGIIGlG~IG~~vA~~l~~~g~~V~-~~d 227 (600)
|.++.|+|+.|-|+|++|+..|+.|...|.+|+ +.|
T Consensus 234 g~~l~g~~VaVQG~GnVG~~aa~~L~e~GakvVavsD 270 (456)
T 3r3j_A 234 NDNLENKKCLVSGSGNVAQYLVEKLIEKGAIVLTMSD 270 (456)
T ss_dssp TCCSTTCCEEEECCSHHHHHHHHHHHHHTCCBCCEEC
T ss_pred CCCccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEC
Confidence 567999999999999999999999999999987 344
|
| >4dpk_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; 2.05A {Sulfolobus tokodaii} PDB: 4dpm_A* | Back alignment and structure |
|---|
Probab=90.90 E-value=0.16 Score=53.29 Aligned_cols=85 Identities=18% Similarity=0.148 Sum_probs=52.5
Q ss_pred CEEEEEe-cChhHHHHHHHhhcC-CCEEEEEC-CCC-ChhHHH---------------HcCCcccCHHHHhccCCEEEEe
Q 007512 198 KTLAVLG-FGKVGSEVARRAKGL-GMHVIAHD-PYA-PADRAR---------------AIGVDLVSFDEAIATADFISLH 258 (600)
Q Consensus 198 ktiGIIG-lG~IG~~vA~~l~~~-g~~V~~~d-~~~-~~~~a~---------------~~g~~~~~l~ell~~aDvV~l~ 258 (600)
.+||||| .|.+|+.+.+.|..+ .+++.... ++. -..... +..+...+.+ .+.++|+|++|
T Consensus 8 ~kVaIvGATGyvG~eLlrlL~~hP~~el~~l~S~~saGk~~~~~~p~~~~~~~~~~~~~~~v~~~~~~-~~~~vDvvf~a 86 (359)
T 4dpk_A 8 LKAAILGATGLVGIEYVRMLSNHPYIKPAYLAGKGSVGKPYGEVVRWQTVGQVPKEIADMEIKPTDPK-LMDDVDIIFSP 86 (359)
T ss_dssp EEEEETTTTSTTHHHHHHHHTTCSSEEEEEEEESTTTTSBHHHHCCCCSSSCCCHHHHTCBCEECCGG-GCTTCCEEEEC
T ss_pred CeEEEECCCCHHHHHHHHHHHhCCCceEEEEECchhcCCChhHhcccccccccccccccceEEeCCHH-HhcCCCEEEEC
Confidence 5799999 799999999999876 45766542 221 111111 1112222333 35899999999
Q ss_pred cCCCccccccccHhHhccCCCceEEEEccC
Q 007512 259 MPLTPATSKVLNDETFGKMKKGVRIINVAR 288 (600)
Q Consensus 259 ~Pl~~~t~~li~~~~l~~mk~gailvNvar 288 (600)
+|... ++.+.. ..++.|+.+||.+.
T Consensus 87 ~p~~~-s~~~a~----~~~~~G~~vIDlSa 111 (359)
T 4dpk_A 87 LPQGA-AGPVEE----QFAKEGFPVISNSP 111 (359)
T ss_dssp CCTTT-HHHHHH----HHHHTTCEEEECSS
T ss_pred CChHH-HHHHHH----HHHHCCCEEEEcCC
Confidence 99543 222211 12467999999874
|
| >4dpl_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; HET: NAP; 1.90A {Sulfolobus tokodaii} PDB: 4dpk_A* 4dpm_A* | Back alignment and structure |
|---|
Probab=90.90 E-value=0.16 Score=53.29 Aligned_cols=85 Identities=18% Similarity=0.148 Sum_probs=52.5
Q ss_pred CEEEEEe-cChhHHHHHHHhhcC-CCEEEEEC-CCC-ChhHHH---------------HcCCcccCHHHHhccCCEEEEe
Q 007512 198 KTLAVLG-FGKVGSEVARRAKGL-GMHVIAHD-PYA-PADRAR---------------AIGVDLVSFDEAIATADFISLH 258 (600)
Q Consensus 198 ktiGIIG-lG~IG~~vA~~l~~~-g~~V~~~d-~~~-~~~~a~---------------~~g~~~~~l~ell~~aDvV~l~ 258 (600)
.+||||| .|.+|+.+.+.|..+ .+++.... ++. -..... +..+...+.+ .+.++|+|++|
T Consensus 8 ~kVaIvGATGyvG~eLlrlL~~hP~~el~~l~S~~saGk~~~~~~p~~~~~~~~~~~~~~~v~~~~~~-~~~~vDvvf~a 86 (359)
T 4dpl_A 8 LKAAILGATGLVGIEYVRMLSNHPYIKPAYLAGKGSVGKPYGEVVRWQTVGQVPKEIADMEIKPTDPK-LMDDVDIIFSP 86 (359)
T ss_dssp EEEEETTTTSTTHHHHHHHHTTCSSEEEEEEEESTTTTSBHHHHCCCCSSSCCCHHHHTCBCEECCGG-GCTTCCEEEEC
T ss_pred CeEEEECCCCHHHHHHHHHHHhCCCceEEEEECchhcCCChhHhcccccccccccccccceEEeCCHH-HhcCCCEEEEC
Confidence 5799999 799999999999876 45766542 221 111111 1112222333 35899999999
Q ss_pred cCCCccccccccHhHhccCCCceEEEEccC
Q 007512 259 MPLTPATSKVLNDETFGKMKKGVRIINVAR 288 (600)
Q Consensus 259 ~Pl~~~t~~li~~~~l~~mk~gailvNvar 288 (600)
+|... ++.+.. ..++.|+.+||.+.
T Consensus 87 ~p~~~-s~~~a~----~~~~~G~~vIDlSa 111 (359)
T 4dpl_A 87 LPQGA-AGPVEE----QFAKEGFPVISNSP 111 (359)
T ss_dssp CCTTT-HHHHHH----HHHHTTCEEEECSS
T ss_pred CChHH-HHHHHH----HHHHCCCEEEEcCC
Confidence 99543 222211 12467999999874
|
| >2x5j_O E4PDH, D-erythrose-4-phosphate dehydrogenase; oxidoreductase, hydride transfer, aldehyde dehydrogenase, PY biosynthesis; 2.30A {Escherichia coli} PDB: 2xf8_A* 2x5k_O* | Back alignment and structure |
|---|
Probab=90.85 E-value=0.22 Score=51.88 Aligned_cols=31 Identities=29% Similarity=0.504 Sum_probs=26.1
Q ss_pred CEEEEEecChhHHHHHHHhhc---C-CCEEEEECC
Q 007512 198 KTLAVLGFGKVGSEVARRAKG---L-GMHVIAHDP 228 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~---~-g~~V~~~d~ 228 (600)
.+|||+|+|+||+.+.+.|.. . +++|.+.+.
T Consensus 3 ikVgI~G~G~iGr~l~r~l~~~~~~~~~eivai~~ 37 (339)
T 2x5j_O 3 VRVAINGFGRIGRNVVRALYESGRRAEITVVAINE 37 (339)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTSGGGTEEEEEEEC
T ss_pred eEEEEECcCHHHHHHHHHHHcCCCCCCEEEEEEeC
Confidence 379999999999999999887 4 688877643
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 600 | ||||
| d1ygya1 | 184 | c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase | 1e-44 | |
| d1gdha1 | 191 | c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyp | 3e-42 | |
| d2naca1 | 188 | c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudom | 6e-40 | |
| d1sc6a1 | 188 | c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase | 6e-38 | |
| d1mx3a1 | 193 | c.2.1.4 (A:126-318) Transcription corepressor CtbP | 7e-33 | |
| d1j4aa1 | 197 | c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lacto | 1e-27 | |
| d1ygya2 | 130 | c.23.12.1 (A:3-98,A:283-316) Phosphoglycerate dehy | 6e-25 | |
| d1qp8a1 | 181 | c.2.1.4 (A:83-263) Putative formate dehydrogenase | 3e-24 | |
| d1gdha2 | 129 | c.23.12.1 (A:2-100,A:292-321) D-glycerate dehydrog | 1e-22 | |
| d1dxya1 | 199 | c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydro | 2e-22 | |
| d1sc6a2 | 132 | c.23.12.1 (A:7-107,A:296-326) Phosphoglycerate deh | 3e-20 | |
| d1ygya4 | 135 | d.81.2.2 (A:317-451) D-3-phosphoglycerate dehydrog | 3e-20 | |
| d1dxya2 | 131 | c.23.12.1 (A:1-100,A:300-330) D-2-hydroxyisocaproa | 2e-19 | |
| d1mx3a2 | 133 | c.23.12.1 (A:27-125,A:319-352) Transcription corep | 2e-19 | |
| d1j4aa2 | 134 | c.23.12.1 (A:2-103,A:301-332) D-lactate dehydrogen | 9e-18 | |
| d2naca2 | 186 | c.23.12.1 (A:1-147,A:336-374) Formate dehydrogenas | 1e-15 | |
| d1li4a1 | 163 | c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolas | 3e-13 | |
| d1qp8a2 | 121 | c.23.12.1 (A:1-82,A:264-302) Putative formate dehy | 9e-13 | |
| d1ygya3 | 78 | d.58.18.1 (A:452-529) Phosphoglycerate dehydrogena | 2e-11 | |
| d1sc6a3 | 84 | d.58.18.1 (A:327-410) Phosphoglycerate dehydrogena | 5e-10 | |
| d1v8ba1 | 163 | c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolas | 1e-08 | |
| d1hwxa1 | 293 | c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow ( | 8e-05 | |
| d1pjqa1 | 113 | c.2.1.11 (A:1-113) Siroheme synthase CysG, domain | 4e-04 | |
| d1leha1 | 230 | c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillu | 0.001 | |
| d1v9la1 | 242 | c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrob | 0.001 |
| >d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 184 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 154 bits (390), Expect = 1e-44
Identities = 85/185 (45%), Positives = 121/185 (65%), Gaps = 1/185 (0%)
Query: 154 NTVAAAEHGIALLAAMARNVAQADASVKAGKWQRNKYVGVSLVGKTLAVLGFGKVGSEVA 213
N +AAEH +ALL A +R + ADAS++ W+R+ + G + GKT+ V+G G++G VA
Sbjct: 1 NIHSAAEHALALLLAASRQIPAADASLREHTWKRSSFSGTEIFGKTVGVVGLGRIGQLVA 60
Query: 214 RRAKGLGMHVIAHDPYAPADRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVLNDET 273
+R G +V+A+DPY RA +G++L+S D+ +A ADFIS+H+P TP T+ +++ E
Sbjct: 61 QRIAAFGAYVVAYDPYVSPARAAQLGIELLSLDDLLARADFISVHLPKTPETAGLIDKEA 120
Query: 274 FGKMKKGVRIINVARGGVIDEEALVRALDSGRVAQAALDVFTEEPPPADSKLVQHERVTV 333
K K GV I+N ARGG++DE AL A+ G V A LDVF EP DS L + +V V
Sbjct: 121 LAKTKPGVIIVNAARGGLVDEAALADAITGGHVRAAGLDVFATEPCT-DSPLFELAQVVV 179
Query: 334 TPHLG 338
TPHLG
Sbjct: 180 TPHLG 184
|
| >d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]} Length = 191 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-glycerate dehydrogenase species: Hyphomicrobium methylovorum [TaxId: 84]
Score = 148 bits (374), Expect = 3e-42
Identities = 61/191 (31%), Positives = 94/191 (49%), Gaps = 6/191 (3%)
Query: 155 TVAAAEHGIALLAAMARNVAQADASVKAGKWQ---RNKYVGVSLVGKTLAVLGFGKVGSE 211
TVA AE + LL AR + + ++ W + VG L KTL + GFG +G
Sbjct: 2 TVATAEIAMLLLLGSARRAGEGEKMIRTRSWPGWEPLELVGEKLDNKTLGIYGFGSIGQA 61
Query: 212 VARRAKGLGMHVIAHDPYAP--ADRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVL 269
+A+RA+G M + D + +D A S D ++ + F SL+ P TP T
Sbjct: 62 LAKRAQGFDMDIDYFDTHRASSSDEASYQATFHDSLDSLLSVSQFFSLNAPSTPETRYFF 121
Query: 270 NDETFGKMKKGVRIINVARGGVIDEEALVRALDSGRVAQAALDVFTEEPPPADSKLVQHE 329
N T + +G ++N ARG ++D E +V AL++GR+A A DVF EP +
Sbjct: 122 NKATIKSLPQGAIVVNTARGDLVDNELVVAALEAGRLAYAGFDVFAGEPNI-NEGYYDLP 180
Query: 330 RVTVTPHLGAS 340
+ PH+G++
Sbjct: 181 NTFLFPHIGSA 191
|
| >d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]} Length = 188 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Formate dehydrogenase species: Pseudomonas sp., strain 101 [TaxId: 306]
Score = 142 bits (357), Expect = 6e-40
Identities = 51/187 (27%), Positives = 87/187 (46%), Gaps = 4/187 (2%)
Query: 156 VAAAEHGIALLAAMARNVAQADASVKAGKWQRNKYV--GVSLVGKTLAVLGFGKVGSEVA 213
++ AEH + ++ ++ RN + + G W V L + + G++G V
Sbjct: 1 ISVAEHVVMMILSLVRNYLPSHEWARKGGWNIADCVSHAYDLEAMHVGTVAAGRIGLAVL 60
Query: 214 RRAKGLGMHVIAHDPYAPADRARAIG--VDLVSFDEAIATADFISLHMPLTPATSKVLND 271
RR +H+ D + + + ++ D ++L+ PL P T ++ND
Sbjct: 61 RRLAPFDVHLHYTDRHRLPESVEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMIND 120
Query: 272 ETFGKMKKGVRIINVARGGVIDEEALVRALDSGRVAQAALDVFTEEPPPADSKLVQHERV 331
ET K+G I+N ARG + D +A+ RAL+SGR+A A DV+ +P P D
Sbjct: 121 ETLKLFKRGAYIVNTARGKLCDRDAVARALESGRLAGYAGDVWFPQPAPKDHPWRTMPYN 180
Query: 332 TVTPHLG 338
+TPH+
Sbjct: 181 GMTPHIS 187
|
| >d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]} Length = 188 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Escherichia coli [TaxId: 562]
Score = 136 bits (343), Expect = 6e-38
Identities = 62/189 (32%), Positives = 95/189 (50%), Gaps = 6/189 (3%)
Query: 154 NTVAAAEHGIALLAAMARNVAQADASVKAGKWQRNKYVGVSLVGKTLAVLGFGKVGSEVA 213
NT + AE I L + R V +A+A G + GK L ++G+G +G+++
Sbjct: 1 NTRSVAELVIGELLLLLRGVPEANAKAHRGVGNKLAAGSFEARGKKLGIIGYGHIGTQLG 60
Query: 214 RRAKGLGMHVIAHDPYAPADRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVLNDET 273
A+ LGM+V +D A V + + +D +SLH+P P+T ++ +
Sbjct: 61 ILAESLGMYVYFYDIENKLPLGNATQVQ--HLSDLLNMSDVVSLHVPENPSTKNMMGAKE 118
Query: 274 FGKMKKGVRIINVARGGVIDEEALVRALDSGRVAQAALDVFTEEPP----PADSKLVQHE 329
MK G +IN +RG V+D AL AL S +A AA+DVF EP P S L + +
Sbjct: 119 ISLMKPGSLLINASRGTVVDIPALADALASKHLAGAAIDVFPTEPATNSDPFTSPLAEFD 178
Query: 330 RVTVTPHLG 338
V +TPH+G
Sbjct: 179 NVLLTPHIG 187
|
| >d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]} Length = 193 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Transcription corepressor CtbP species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]
Score = 122 bits (307), Expect = 7e-33
Identities = 56/187 (29%), Positives = 96/187 (51%), Gaps = 9/187 (4%)
Query: 159 AEHGIALLAAMARNVAQADASVKAGKWQRNK-------YVGVSLVGKTLAVLGFGKVGSE 211
A+ + + + R +++ G ++ + G+TL ++G G+VG
Sbjct: 4 ADSTLCHILNLYRRATWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQA 63
Query: 212 VARRAKGLGMHVIAHDPYAPADRARAIGVD-LVSFDEAIATADFISLHMPLTPATSKVLN 270
VA RAK G +V+ +DPY RA+G+ + + + + +D ++LH L ++N
Sbjct: 64 VALRAKAFGFNVLFYDPYLSDGVERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLIN 123
Query: 271 DETFGKMKKGVRIINVARGGVIDEEALVRALDSGRVAQAALDVFTEEP-PPADSKLVQHE 329
D T +M++G ++N ARGG++DE+AL +AL GR+ AALDV EP + L
Sbjct: 124 DFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFSQGPLKDAP 183
Query: 330 RVTVTPH 336
+ TPH
Sbjct: 184 NLICTPH 190
|
| >d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]} Length = 197 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-lactate dehydrogenase species: Lactobacillus helveticus [TaxId: 1587]
Score = 107 bits (268), Expect = 1e-27
Identities = 58/193 (30%), Positives = 90/193 (46%), Gaps = 14/193 (7%)
Query: 157 AAAEHGIALLAAMARNVAQADASVKAGKWQRNKYVGVSLVGKTLAVLGFGKVGSEVARRA 216
A AEH A + R D V + +G + + + V+G G +G +
Sbjct: 3 AIAEHAAIQAARILRQDKAMDEKVARHDLRWAPTIGREVRDQVVGVVGTGHIGQVFMQIM 62
Query: 217 KGLGMHVIAHDPYAPADRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVLNDETFGK 276
+G G VI +D + G + S D+ AD ISLH+P PA ++NDE+ K
Sbjct: 63 EGFGAKVITYDIF-RNPELEKKGYYVDSLDDLYKQADVISLHVPDVPANVHMINDESIAK 121
Query: 277 MKKGVRIINVARGGVIDEEALVRALDSGRVAQAALDVFTEEPP-------------PADS 323
MK+ V I+NV+RG ++D +A++R LDSG++ A+DV+ E +
Sbjct: 122 MKQDVVIVNVSRGPLVDTDAVIRGLDSGKIFGYAMDVYEGEVGIFNEDWEGKEFPDARLA 181
Query: 324 KLVQHERVTVTPH 336
L+ V VTP
Sbjct: 182 DLIARPNVLVTPK 194
|
| >d1ygya2 c.23.12.1 (A:3-98,A:283-316) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 130 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Formate/glycerate dehydrogenase catalytic domain-like family: Formate/glycerate dehydrogenases, substrate-binding domain domain: Phosphoglycerate dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 98.3 bits (244), Expect = 6e-25
Identities = 50/129 (38%), Positives = 70/129 (54%), Gaps = 1/129 (0%)
Query: 57 SKPTVLIAEKLGQAGLDLLNEFANVDCAYNLSPEELCTKISLCDALIVRSGTKVNRDVFE 116
S P VLIA+KL + + L + V ++L + DAL+VRS T V+ +V
Sbjct: 1 SLPVVLIADKLAPSTVAALGDQVEVRWVDGPDRDKLLAAVPEADALLVRSATTVDAEVLA 60
Query: 117 SSAGRLKVVGRAGVGIDNVDLAAATEFGCLVVNAPTANTVAAAEHGIALLAAMARNVAQA 176
+ A +LK+V RAGVG+DNVD+ AAT G LVVNAPT+ + A A+ A + +A A
Sbjct: 61 A-APKLKIVARAGVGLDNVDVDAATARGVLVVNAPTSASTAEAQDRAGTDVAESVRLALA 119
Query: 177 DASVKAGKW 185
V
Sbjct: 120 GEFVPDAVN 128
|
| >d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 181 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Putative formate dehydrogenase species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Score = 97.5 bits (241), Expect = 3e-24
Identities = 46/187 (24%), Positives = 77/187 (41%), Gaps = 8/187 (4%)
Query: 153 ANTVAAAEHGIALLAAMARNVAQADASVKAGKWQRNKYVGVSLVGKTLAVLGFGKVGSEV 212
A+ VA E +ALL A + + Q +K G + R+ + + G+ +AVLG G++G+ V
Sbjct: 1 ADAVA--EFALALLLAPYKRIIQYGEKMKRGDYGRDVEIPLI-QGEKVAVLGLGEIGTRV 57
Query: 213 ARRAKGLGMHVIAHDPYAPADRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVLNDE 272
+ LG V R S +EA+ A +PL T ++ +
Sbjct: 58 GKILAALGAQVRGFSRTPKEGPWRFT----NSLEEALREARAAVCALPLNKHTRGLVKYQ 113
Query: 273 TFGKMKKGVRIINVARGGVIDEEALVRALDSGRVAQAALDVFT-EEPPPADSKLVQHERV 331
M + +NV R V+D + ++R L A DV+ D++ V
Sbjct: 114 HLALMAEDAVFVNVGRAEVLDRDGVLRILKERPQFIFASDVWWGRNDFAKDAEFFSLPNV 173
Query: 332 TVTPHLG 338
TP +
Sbjct: 174 VATPWVA 180
|
| >d1gdha2 c.23.12.1 (A:2-100,A:292-321) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]} Length = 129 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Formate/glycerate dehydrogenase catalytic domain-like family: Formate/glycerate dehydrogenases, substrate-binding domain domain: D-glycerate dehydrogenase species: Hyphomicrobium methylovorum [TaxId: 84]
Score = 91.6 bits (227), Expect = 1e-22
Identities = 29/125 (23%), Positives = 50/125 (40%), Gaps = 3/125 (2%)
Query: 58 KPTVLIAEKLGQAGLDLLNEFANVDCAYN---LSPEELCTKISLCDALIVRSGTKVNRDV 114
K +LI L +A + E +V + ++ +E+ DAL++ K ++V
Sbjct: 1 KKKILITWPLPEAAMARARESYDVIAHGDDPKITIDEMIETAKSVDALLITLNEKCRKEV 60
Query: 115 FESSAGRLKVVGRAGVGIDNVDLAAATEFGCLVVNAPTANTVAAAEHGIALLAAMARNVA 174
+ +K + +G D++DL A G V NAP T A + +
Sbjct: 61 IDRIPENIKCISTYSIGFDHIDLDACKARGIKVGNAPHGATQAREDMAHQANDLIDALFG 120
Query: 175 QADAS 179
AD S
Sbjct: 121 GADMS 125
|
| >d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]} Length = 199 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-2-hydroxyisocaproate dehydrogenase species: Lactobacillus casei [TaxId: 1582]
Score = 93.4 bits (230), Expect = 2e-22
Identities = 55/198 (27%), Positives = 94/198 (47%), Gaps = 16/198 (8%)
Query: 155 TVAAAEHGIALLAAMARNVAQADASVKAGKWQR-NKYVGVSLVGKTLAVLGFGKVGSEVA 213
A AE + + RN+ + A ++AG +++ ++G L +T+ V+G G +G
Sbjct: 2 PAAIAEFALTDTLYLLRNMGKVQAQLQAGDYEKAGTFIGKELGQQTVGVMGTGHIGQVAI 61
Query: 214 RRAKGLGMHVIAHDPYAPADRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVLNDET 273
+ KG G VIA+DPY D VS ++ +D I LH+P + ++N+
Sbjct: 62 KLFKGFGAKVIAYDPYPMKGDHPDF--DYVSLEDLFKQSDVIDLHVPGIEQNTHIINEAA 119
Query: 274 FGKMKKGVRIINVARGGVIDEEALVRALDSGRVAQAALDVFTEEPP-------------P 320
F MK G +IN AR +ID +A++ L SG++A +D + E P
Sbjct: 120 FNLMKPGAIVINTARPNLIDTQAMLSNLKSGKLAGVGIDTYEYETEDLLNLAKHGSFKDP 179
Query: 321 ADSKLVQHERVTVTPHLG 338
+L+ V ++PH+
Sbjct: 180 LWDELLGMPNVVLSPHIA 197
|
| >d1sc6a2 c.23.12.1 (A:7-107,A:296-326) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]} Length = 132 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Formate/glycerate dehydrogenase catalytic domain-like family: Formate/glycerate dehydrogenases, substrate-binding domain domain: Phosphoglycerate dehydrogenase species: Escherichia coli [TaxId: 562]
Score = 84.7 bits (209), Expect = 3e-20
Identities = 33/130 (25%), Positives = 57/130 (43%), Gaps = 4/130 (3%)
Query: 57 SKPTVLIAEKLGQAGLDLLNEFANVDCAY---NLSPEELCTKISLCDALIVRSGTKVNRD 113
K L+ E + Q L+ L + + L E+L I + +RS T + D
Sbjct: 3 DKIKFLLVEGVHQKALESLRAAGYTNIEFHKGALDDEQLKESIRDAHFIGLRSRTHLTED 62
Query: 114 VFESSAGRLKVVGRAGVGIDNVDLAAATEFGCLVVNAPTANTVAAAEHGIALLAAMARNV 173
V ++ +L +G +G + VDL AA + G V NAP ++T A E+ +A
Sbjct: 63 VINAA-EKLVAIGAFAIGTNQVDLDAAAKRGIPVFNAPFSSTQEAQENIGLEVAGKLIKY 121
Query: 174 AQADASVKAG 183
+ +++ A
Sbjct: 122 SDNGSTLSAV 131
|
| >d1ygya4 d.81.2.2 (A:317-451) D-3-phosphoglycerate dehydrogenase SerA {Mycobacterium tuberculosis [TaxId: 1773]} Length = 135 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: FwdE/GAPDH domain-like superfamily: Serine metabolism enzymes domain family: SerA intervening domain-like domain: D-3-phosphoglycerate dehydrogenase SerA species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 84.6 bits (209), Expect = 3e-20
Identities = 28/148 (18%), Positives = 53/148 (35%), Gaps = 18/148 (12%)
Query: 377 EVLTELKPFVELAEKLGRLAVQLVAGGSGVKTVKVSYASSRAPDDLDTRLLRAMITKGLI 436
V E+ P+++L KLG LA L ++ V A + +LR +GL
Sbjct: 3 VVNEEVAPWLDLVRKLGVLAGVLS--DELPVSLSVQVRGELA--AEEVEVLRLSALRGLF 58
Query: 437 EPISDVFVNLVNADYTAKQRGLRLTEERILLDGSPESPLEFIQVQIANVESKFASAISES 496
+ + V VNA A +RG+ + + S ++ V ++
Sbjct: 59 SAVIEDAVTFVNAPALAAERGVTAEICKASESPNHRSVVDVRAVG------------ADG 106
Query: 497 GEIKVEGRV--KDGVPHLTKVGSFEVDV 522
+ V G + + ++ D+
Sbjct: 107 SVVTVSGTLYGPQLSQKIVQINGRHFDL 134
|
| >d1dxya2 c.23.12.1 (A:1-100,A:300-330) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]} Length = 131 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Formate/glycerate dehydrogenase catalytic domain-like family: Formate/glycerate dehydrogenases, substrate-binding domain domain: D-2-hydroxyisocaproate dehydrogenase species: Lactobacillus casei [TaxId: 1582]
Score = 82.8 bits (204), Expect = 2e-19
Identities = 23/129 (17%), Positives = 38/129 (29%), Gaps = 3/129 (2%)
Query: 58 KPTVLIAEKLGQAGLDLLNEFANVDCAYN--LSPEELCTKISLCDALIVRSGTKVNRDVF 115
K A + Y+ E D + T VF
Sbjct: 2 KIIAYGARVDEIQYFKQWAKDTGNTLEYHTEFLDENTVEWAKGFDGINSLQTTPYAAGVF 61
Query: 116 ES-SAGRLKVVGRAGVGIDNVDLAAATEFGCLVVNAPTANTVAAAEHGIALLAAMARNVA 174
E A +K + VG DN+D+ A ++G + N P A L + +
Sbjct: 62 EKMHAYGIKFLTIRNVGTDNIDMTAMKQYGIRLSNVPAYTETAVHNMVYFSLQHLVDFLT 121
Query: 175 QADASVKAG 183
+ + S +
Sbjct: 122 KGETSTEVT 130
|
| >d1mx3a2 c.23.12.1 (A:27-125,A:319-352) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]} Length = 133 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Formate/glycerate dehydrogenase catalytic domain-like family: Formate/glycerate dehydrogenases, substrate-binding domain domain: Transcription corepressor CtbP species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]
Score = 82.3 bits (203), Expect = 2e-19
Identities = 27/130 (20%), Positives = 54/130 (41%), Gaps = 4/130 (3%)
Query: 59 PTVLIAEKL-GQAGLDLLNEFANVDCAYNLSPEELCTKI-SLCDALIVRSGTKVNRDVFE 116
P V + + + +L + A V S +E+ K+ + ++ + R+ E
Sbjct: 2 PLVALLDGRDCTVEMPILKDVATVAFCDAQSTQEIHEKVLNEAVGALMYHTITLTREDLE 61
Query: 117 SSAGRLKVVGRAGVGIDNVDLAAATEFGCLVVNAPTANTVAAAEHGIALLAAMARNVAQA 176
L+++ R G G DN+D+ +A + G V N P A+ + + I + AR + +A
Sbjct: 62 K-FKALRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASV-YSEQASIEMREEAAREIRRA 119
Query: 177 DASVKAGKWQ 186
+
Sbjct: 120 ITGRIPDSLK 129
|
| >d1j4aa2 c.23.12.1 (A:2-103,A:301-332) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]} Length = 134 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Formate/glycerate dehydrogenase catalytic domain-like family: Formate/glycerate dehydrogenases, substrate-binding domain domain: D-lactate dehydrogenase species: Lactobacillus helveticus [TaxId: 1587]
Score = 77.7 bits (191), Expect = 9e-18
Identities = 21/116 (18%), Positives = 41/116 (35%), Gaps = 6/116 (5%)
Query: 73 DLLNEFANVDCAY--NLSPEELCTKISLCDALIVRSGTKVNRDVFESSAG-RLKVVGRAG 129
+ + +V+ Y L E D ++V + ++ A + +
Sbjct: 18 EWEDAHKDVEVEYTDKLLTPETVALAKGADGVVVYQQLDYIAETLQALADNGITKMSLRN 77
Query: 130 VGIDNVDLAAATEFGCLVVNAPTANTVAAAEHGIALLAAMARNVAQADASVKAGKW 185
VG+DN+D+A A E G + N P + H + + A + K +
Sbjct: 78 VGVDNIDMAKAKELGFQITNVP---VYSYTTHAVRNMVVKAFDNNLELVEGKEAET 130
|
| >d2naca2 c.23.12.1 (A:1-147,A:336-374) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Formate/glycerate dehydrogenase catalytic domain-like family: Formate/glycerate dehydrogenases, substrate-binding domain domain: Formate dehydrogenase species: Pseudomonas sp., strain 101 [TaxId: 306]
Score = 73.5 bits (180), Expect = 1e-15
Identities = 19/115 (16%), Positives = 35/115 (30%), Gaps = 11/115 (9%)
Query: 81 VDCAYNLSPEELCTKISLCDALIVRS--GTKVNRDVFESSAGRLKVVGRAGVGIDNVDLA 138
V + ++ D +I + + + + LK+ AG+G D+VDL
Sbjct: 72 VTSDKDGPDSVFERELVDADVVISQPFWPAYLTPERIAKAK-NLKLALTAGIGSDHVDLQ 130
Query: 139 AATEFGCLVVNAPTANTVAAAEH--------GIALLAAMARNVAQADASVKAGKW 185
+A + V N+ I R + V+ G
Sbjct: 131 SAIDRNVTVAEVTYCNSTTLTAQARYAAGTREILECFFEGRPIRDEYLIVQGGAL 185
|
| >d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]} Length = 163 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Human (Homo sapiens) [TaxId: 9606]
Score = 65.7 bits (160), Expect = 3e-13
Identities = 25/127 (19%), Positives = 43/127 (33%), Gaps = 4/127 (3%)
Query: 192 GVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPADRARAIGVDLVSFDEAIAT 251
V + GK V G+G VG A+ +G G VI + A+ V+ +
Sbjct: 19 DVMIAGKVAVVAGYGDVGKGCAQALRGFGARVIITEIDPINALQAAMEGYEVT---TMDE 75
Query: 252 ADFISLHMPLTPATSKVLNDETFGKMKKGVRIINV-ARGGVIDEEALVRALDSGRVAQAA 310
A T ++ F +MK + N+ ID + L +
Sbjct: 76 ACQEGNIFVTTTGCIDIILGRHFEQMKDDAIVCNIGHFDVEIDVKWLNENAVEKVNIKPQ 135
Query: 311 LDVFTEE 317
+D + +
Sbjct: 136 VDRYRLK 142
|
| >d1qp8a2 c.23.12.1 (A:1-82,A:264-302) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 121 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Formate/glycerate dehydrogenase catalytic domain-like family: Formate/glycerate dehydrogenases, substrate-binding domain domain: Putative formate dehydrogenase species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Score = 63.1 bits (153), Expect = 9e-13
Identities = 17/160 (10%), Positives = 40/160 (25%), Gaps = 41/160 (25%)
Query: 61 VLIAEKLGQAGLDLLNEFANVDCAYNLSPEELCTKISLCDALIVRSGTKVNRDVFESSAG 120
+ + +L + L ++ + +L E +++ +
Sbjct: 3 LYVNFELPPEAEEELRKYFKIVRGGDLGNVEAAL------------VSRITAEELAK-MP 49
Query: 121 RLKVVGRAGVGIDNVDLAAATEFGCLVVNAPTANTVAAAEHGIALLAAMARNVAQADASV 180
RLK + G+D++ + V +N ++ R
Sbjct: 50 RLKFIQVVTAGLDHLPWESIPP-HVTVAGNAGSNGYGNERVWRQMVMEAVR--------- 99
Query: 181 KAGKWQRNKYVGVSLVGKTLAVLGFGKVGSEVARRAKGLG 220
L G +A+R +G
Sbjct: 100 ------------------NLITYATGGRPRNIAKREDYIG 121
|
| >d1ygya3 d.58.18.1 (A:452-529) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 78 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: ACT-like family: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain domain: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 58.3 bits (141), Expect = 2e-11
Identities = 16/76 (21%), Positives = 34/76 (44%)
Query: 525 EGSIILCRQVDQPGMIGTVGSILGSENVNVSFMSVGRVAPRKHAVMAIGVDEQPRKETLK 584
+G ++ VD+PG +G +G++LG+ VN+ + A A + + +D+ +
Sbjct: 2 QGINLIIHYVDRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPGATILLRLDQDVPDDVRT 61
Query: 585 KIGDVPAIEEFVFLKL 600
I + + L
Sbjct: 62 AIAAAVDAYKLEVVDL 77
|
| >d1sc6a3 d.58.18.1 (A:327-410) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Escherichia coli [TaxId: 562]} Length = 84 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: ACT-like family: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain domain: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain species: Escherichia coli [TaxId: 562]
Score = 54.0 bits (130), Expect = 5e-10
Identities = 16/75 (21%), Positives = 35/75 (46%), Gaps = 3/75 (4%)
Query: 521 DVSLE---GSIILCRQVDQPGMIGTVGSILGSENVNVSFMSVGRVAPRKHAVMAIGVDEQ 577
+VSL G ++ ++PG++ + I + VN++ + A + V+ I DE
Sbjct: 3 EVSLPLHGGRRLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQTSAQMGYVVIDIEADED 62
Query: 578 PRKETLKKIGDVPAI 592
++ L+ + +P
Sbjct: 63 VAEKALQAMKAIPGT 77
|
| >d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]} Length = 163 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]
Score = 52.2 bits (125), Expect = 1e-08
Identities = 30/111 (27%), Positives = 44/111 (39%), Gaps = 8/111 (7%)
Query: 192 GVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYA-PADRARAIGVDLVSFDEAIA 250
+ GK + + G+G VG A KGLG V + A +A G ++V+ DE +
Sbjct: 18 DFLISGKIVVICGYGDVGKGCASSMKGLGARVYITEIDPICAIQAVMEGFNVVTLDEIVD 77
Query: 251 TADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVIDEEALVRAL 301
DF V+ E KMK + N+ D+E V L
Sbjct: 78 KGDFFITCTGNVD----VIKLEHLLKMKNNAVVGNIGHF---DDEIQVNEL 121
|
| >d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]} Length = 293 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Cow (Bos taurus) [TaxId: 9913]
Score = 42.4 bits (99), Expect = 8e-05
Identities = 15/61 (24%), Positives = 21/61 (34%), Gaps = 1/61 (1%)
Query: 168 AMARNVAQA-DASVKAGKWQRNKYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAH 226
A R V + ++ + + KT AV GFG VG R G +A
Sbjct: 6 ATGRGVFHGIENFIENASYMSILGMTPGFGDKTFAVQGFGNVGLHSMRYLHRFGAKCVAV 65
Query: 227 D 227
Sbjct: 66 G 66
|
| >d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]} Length = 113 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Siroheme synthase CysG, domain 1 species: Salmonella typhimurium [TaxId: 90371]
Score = 38.2 bits (88), Expect = 4e-04
Identities = 14/96 (14%), Positives = 24/96 (25%), Gaps = 1/96 (1%)
Query: 193 VSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYA-PADRARAIGVDLVSFDEAIAT 251
L + ++G G V AR G + + P A L +
Sbjct: 8 CQLRDRDCLIVGGGDVAERKARLLLEAGARLTVNALTFIPQFTVWANEGMLTLVEGPFDE 67
Query: 252 ADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVA 287
S + + +N + NV
Sbjct: 68 TLLDSCWLAIAATDDDTVNQRVSDAAESRRIFCNVV 103
|
| >d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Leucine dehydrogenase species: Bacillus sphaericus [TaxId: 1421]
Score = 38.1 bits (88), Expect = 0.001
Identities = 26/113 (23%), Positives = 39/113 (34%), Gaps = 5/113 (4%)
Query: 185 WQRNKYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPA-DRARAIGVDLV 243
+ + SL G ++V G G V + ++ G ++ D A A A
Sbjct: 27 AAKEAFGSDSLEGLAVSVQGLGNVAKALCKKLNTEGAKLVVTDVNKAAVSAAVAEEGADA 86
Query: 244 SFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVIDEEA 296
AI + P A VLND T ++K V I A + D
Sbjct: 87 VAPNAIYGVT-CDIFAPC--ALGAVLNDFTIPQLKAKV-IAGSADNQLKDPRH 135
|
| >d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Pyrobaculum islandicum [TaxId: 2277]
Score = 38.2 bits (88), Expect = 0.001
Identities = 14/41 (34%), Positives = 20/41 (48%)
Query: 189 KYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPY 229
K + + GKT+A+ G G VG A + +G VIA
Sbjct: 23 KKLWGGIEGKTVAIQGMGNVGRWTAYWLEKMGAKVIAVSDI 63
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 600 | |||
| d1ygya1 | 184 | Phosphoglycerate dehydrogenase {Mycobacterium tube | 100.0 | |
| d1mx3a1 | 193 | Transcription corepressor CtbP {Human (Homo sapien | 100.0 | |
| d1gdha1 | 191 | D-glycerate dehydrogenase {Hyphomicrobium methylov | 100.0 | |
| d2naca1 | 188 | Formate dehydrogenase {Pseudomonas sp., strain 101 | 100.0 | |
| d1j4aa1 | 197 | D-lactate dehydrogenase {Lactobacillus helveticus | 100.0 | |
| d1dxya1 | 199 | D-2-hydroxyisocaproate dehydrogenase {Lactobacillu | 100.0 | |
| d1sc6a1 | 188 | Phosphoglycerate dehydrogenase {Escherichia coli [ | 100.0 | |
| d1qp8a1 | 181 | Putative formate dehydrogenase {Archaeon Pyrobacul | 100.0 | |
| d1ygya2 | 130 | Phosphoglycerate dehydrogenase {Mycobacterium tube | 99.94 | |
| d1ygya4 | 135 | D-3-phosphoglycerate dehydrogenase SerA {Mycobacte | 99.93 | |
| d1sc6a2 | 132 | Phosphoglycerate dehydrogenase {Escherichia coli [ | 99.89 | |
| d1gdha2 | 129 | D-glycerate dehydrogenase {Hyphomicrobium methylov | 99.88 | |
| d1qp8a2 | 121 | Putative formate dehydrogenase {Archaeon Pyrobacul | 99.83 | |
| d1dxya2 | 131 | D-2-hydroxyisocaproate dehydrogenase {Lactobacillu | 99.82 | |
| d1mx3a2 | 133 | Transcription corepressor CtbP {Human (Homo sapien | 99.82 | |
| d2naca2 | 186 | Formate dehydrogenase {Pseudomonas sp., strain 101 | 99.76 | |
| d1j4aa2 | 134 | D-lactate dehydrogenase {Lactobacillus helveticus | 99.71 | |
| d1ygya3 | 78 | Phosphoglycerate dehydrogenase, regulatory (C-term | 99.66 | |
| d1li4a1 | 163 | S-adenosylhomocystein hydrolase {Human (Homo sapie | 99.62 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 99.49 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 99.49 | |
| d1sc6a3 | 84 | Phosphoglycerate dehydrogenase, regulatory (C-term | 99.41 | |
| d1v8ba1 | 163 | S-adenosylhomocystein hydrolase {Plasmodium falcip | 99.36 | |
| d1vpda2 | 161 | Hydroxyisobutyrate dehydrogenase {Salmonella typhi | 99.3 | |
| d3cuma2 | 162 | Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru | 99.19 | |
| d2pgda2 | 176 | 6-phosphogluconate dehydrogenase {Sheep (Ovis orie | 98.98 | |
| d2cvza2 | 156 | Hydroxyisobutyrate dehydrogenase {Thermus thermoph | 98.89 | |
| d2pv7a2 | 152 | Prephenate dehydrogenase TyrA {Haemophilus influen | 98.84 | |
| d1i36a2 | 152 | Conserved hypothetical protein MTH1747 {Archaeon M | 98.83 | |
| d2ahra2 | 152 | Pyrroline-5-carboxylate reductase ProC {Streptococ | 98.67 | |
| d1pgja2 | 178 | 6-phosphogluconate dehydrogenase {Trypanosoma bruc | 98.57 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 98.5 | |
| d2iafa1 | 145 | L-serine dehydratase SdhL, N-terminal domain {Legi | 98.49 | |
| d2i76a2 | 153 | Hypothetical protein TM1727 {Thermotoga maritima [ | 98.41 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 98.41 | |
| d1c1da1 | 201 | Phenylalanine dehydrogenase {Rhodococcus sp., M4 [ | 98.38 | |
| d1np3a2 | 182 | Class I ketol-acid reductoisomerase (KARI) {Pseudo | 98.31 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 98.3 | |
| d1yqga2 | 152 | Pyrroline-5-carboxylate reductase ProC {Neisseria | 98.29 | |
| d1f0ya2 | 192 | Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum | 98.28 | |
| d1gpja2 | 159 | Glutamyl tRNA-reductase middle domain {Archaeon Me | 98.09 | |
| d1pjqa1 | 113 | Siroheme synthase CysG, domain 1 {Salmonella typhi | 98.08 | |
| d1qmga2 | 226 | Class II ketol-acid reductoisomerase (KARI) {Spina | 98.05 | |
| d1wdka3 | 186 | Fatty oxidation complex alpha subunit, middle doma | 98.02 | |
| d1mv8a2 | 202 | GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos | 97.9 | |
| d1dlja2 | 196 | UDP-glucose dehydrogenase (UDPGDH) {Streptococcus | 97.75 | |
| d1ks9a2 | 167 | Ketopantoate reductase PanE {Escherichia coli [Tax | 97.73 | |
| d1txga2 | 180 | Glycerol-3- phosphate dehydrogenase {Archaeoglobus | 97.68 | |
| d2jfga1 | 93 | UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase | 97.68 | |
| d2fgca2 | 78 | Acetolactate synthase small subunit, IlvH {Thermot | 97.68 | |
| d2pc6a2 | 77 | Acetolactate synthase small subunit, IlvH {Nitroso | 97.66 | |
| d2f1fa1 | 76 | Acetolactate synthase small subunit, IlvH {Escheri | 97.66 | |
| d1a4ia1 | 170 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 97.6 | |
| d1b0aa1 | 166 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 97.58 | |
| d1edza1 | 171 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 97.57 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 97.56 | |
| d1leha1 | 230 | Leucine dehydrogenase {Bacillus sphaericus [TaxId: | 97.44 | |
| d1n1ea2 | 189 | Glycerol-3- phosphate dehydrogenase {Trypanosome ( | 97.41 | |
| d1y7pa2 | 77 | Hypothetical protein AF1403, N-terminal domain {Ar | 97.4 | |
| d1j5pa4 | 132 | Hypothetical protein TM1643 {Thermotoga maritima [ | 97.32 | |
| d2f06a1 | 71 | Hypothetical protein BT0572 {Bacteroides thetaiota | 97.23 | |
| d1tlta1 | 164 | Virulence factor MviM {Escherichia coli [TaxId: 56 | 97.21 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 97.15 | |
| d2f06a2 | 70 | Hypothetical protein BT0572 {Bacteroides thetaiota | 97.01 | |
| d1e5qa1 | 182 | Saccharopine reductase {Rice blast fungus (Magnapo | 96.99 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 96.99 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 96.91 | |
| d1nyta1 | 170 | Shikimate 5-dehydrogenase AroE {Escherichia coli [ | 96.89 | |
| d1f06a1 | 170 | Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb | 96.89 | |
| d1zpva1 | 83 | UPF0237 protein SP0238 {Streptococcus pneumoniae [ | 96.84 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 96.82 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 96.77 | |
| d1vi2a1 | 182 | Putative shikimate dehydrogenase YdiB {Escherichia | 96.76 | |
| d1a5za1 | 140 | Lactate dehydrogenase {Thermotoga maritima [TaxId: | 96.75 | |
| d1nvmb1 | 157 | Acetaldehyde dehydrogenase (acylating) {Pseudomona | 96.74 | |
| d1guza1 | 142 | Malate dehydrogenase {Chlorobium vibrioforme [TaxI | 96.74 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 96.74 | |
| d1xeaa1 | 167 | Putative oxidoreductase VCA1048 {Vibrio cholerae [ | 96.63 | |
| d1mlda1 | 144 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 96.63 | |
| d1mv8a3 | 136 | GDP-mannose 6-dehydrogenase, GDP-binding domain {P | 96.61 | |
| d1v9la1 | 242 | Glutamate dehydrogenase {Pyrobaculum islandicum [T | 96.61 | |
| d1b26a1 | 234 | Glutamate dehydrogenase {Thermotoga maritima [TaxI | 96.6 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 96.6 | |
| d1y6ja1 | 142 | Lactate dehydrogenase {Clostridium thermocellum [T | 96.58 | |
| d1x7da_ | 340 | Ornithine cyclodeaminase {Pseudomonas putida [TaxI | 96.55 | |
| d1uxja1 | 142 | Malate dehydrogenase {Chloroflexus aurantiacus [Ta | 96.55 | |
| d1u8sa1 | 86 | putative transcriptional repressor VC2159 {Vibrio | 96.54 | |
| d1ldna1 | 148 | Lactate dehydrogenase {Bacillus stearothermophilus | 96.52 | |
| d1kjqa2 | 111 | Glycinamide ribonucleotide transformylase PurT, N- | 96.52 | |
| d1i0za1 | 160 | Lactate dehydrogenase {Human (Homo sapiens), heart | 96.48 | |
| d1ez4a1 | 146 | Lactate dehydrogenase {Lactobacillus pentosus [Tax | 96.48 | |
| d1bgva1 | 255 | Glutamate dehydrogenase {Clostridium symbiosum [Ta | 96.46 | |
| d1t2da1 | 150 | Lactate dehydrogenase {Malaria parasite (Plasmodiu | 96.44 | |
| d1pzga1 | 154 | Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5 | 96.42 | |
| d1gtma1 | 239 | Glutamate dehydrogenase {Archaeon Pyrococcus furio | 96.42 | |
| d1ydwa1 | 184 | Probable oxidoreductase At4g09670 {Thale cress (Ar | 96.35 | |
| d1hwxa1 | 293 | Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: | 96.34 | |
| d1luaa1 | 191 | Methylene-tetrahydromethanopterin dehydrogenase {M | 96.26 | |
| d1ojua1 | 142 | Malate dehydrogenase {Archaeon Archaeoglobus fulgi | 96.26 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 96.25 | |
| d1b7go1 | 178 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 96.24 | |
| d1nvta1 | 177 | Shikimate 5-dehydrogenase AroE {Archaeon Methanoco | 96.18 | |
| d1omoa_ | 320 | Archaeal alanine dehydrogenase {Archaeon Archaeogl | 96.15 | |
| d1u8sa2 | 93 | putative transcriptional repressor VC2159 {Vibrio | 96.11 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 96.11 | |
| d2b0ja2 | 242 | 5,10-methenyltetrahydromethanopterin hydrogenase, | 96.08 | |
| d2ldxa1 | 159 | Lactate dehydrogenase {Mouse (Mus musculus) [TaxId | 96.01 | |
| d1llda1 | 143 | Lactate dehydrogenase {Bifidobacterium longum, str | 95.99 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 95.91 | |
| d1p3da1 | 96 | UDP-N-acetylmuramate-alanine ligase MurC {Haemophi | 95.87 | |
| d1zh8a1 | 181 | Hypothetical protein TM0312 {Thermotoga maritima [ | 95.86 | |
| d1hdoa_ | 205 | Biliverdin IX beta reductase {Human (Homo sapiens) | 95.85 | |
| d1hyha1 | 146 | L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La | 95.85 | |
| d1h6da1 | 221 | Glucose-fructose oxidoreductase, N-terminal domain | 95.84 | |
| d3etja2 | 78 | N5-carboxyaminoimidazole ribonucleotide synthetase | 95.74 | |
| d1kyqa1 | 150 | Bifunctional dehydrogenase/ferrochelatase Met8p, N | 95.67 | |
| d1npya1 | 167 | Shikimate 5-dehydrogenase-like protein HI0607 {Hae | 95.61 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 95.45 | |
| d1cf2o1 | 171 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 95.41 | |
| d1j6ua1 | 89 | UDP-N-acetylmuramate-alanine ligase MurC {Thermoto | 95.39 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 95.29 | |
| d1pg5a2 | 153 | Aspartate carbamoyltransferase catalytic subunit { | 95.28 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 95.27 | |
| d2czca2 | 172 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 95.25 | |
| d2cmda1 | 145 | Malate dehydrogenase {Escherichia coli [TaxId: 562 | 95.19 | |
| d1pvva2 | 163 | Ornithine transcarbamoylase {Archaeon Pyrococcus f | 95.07 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 95.0 | |
| d1p77a1 | 171 | Shikimate 5-dehydrogenase AroE {Haemophilus influe | 94.97 | |
| d1lc0a1 | 172 | Biliverdin reductase {Rat (Rattus norvegicus) [Tax | 94.94 | |
| d1jaya_ | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae | 94.93 | |
| d2qmwa2 | 80 | Prephenate dehydratase C-terminal domain {Staphylo | 94.81 | |
| d1otha2 | 170 | Ornithine transcarbamoylase {Human (Homo sapiens) | 94.8 | |
| d1vlva2 | 161 | Ornithine transcarbamoylase {Thermotoga maritima [ | 94.53 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 94.42 | |
| d1vjta1 | 193 | Putative alpha-glucosidase TM0752 {Thermotoga mari | 94.27 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 94.26 | |
| d1ml4a2 | 157 | Aspartate carbamoyltransferase catalytic subunit { | 94.18 | |
| d1dlja3 | 108 | UDP-glucose dehydrogenase (UDPGDH), C-terminal (UD | 94.06 | |
| d1o6za1 | 142 | Malate dehydrogenase {Archaeon Haloarcula marismor | 93.92 | |
| d1s6ya1 | 169 | 6-phospho-beta-glucosidase {Bacillus stearothermop | 93.85 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 93.76 | |
| d1up7a1 | 162 | 6-phospho-beta-glucosidase {Thermotoga maritima [T | 93.68 | |
| d1hyea1 | 145 | MJ0490, lactate/malate dehydrogenase {Archaeon Met | 93.66 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 93.39 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 93.28 | |
| d1id1a_ | 153 | Rck domain from putative potassium channel Kch {Es | 93.26 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 93.15 | |
| d2fy8a1 | 129 | Potassium channel-related protein MthK {Archaeon M | 93.01 | |
| d1y81a1 | 116 | Hypothetical protein PF0725 {Pyrococcus furiosus [ | 92.8 | |
| d2at2a2 | 151 | Aspartate carbamoyltransferase catalytic subunit { | 92.58 | |
| d2nvwa1 | 237 | Galactose/lactose metabolism regulatory protein GA | 92.39 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 92.29 | |
| d1ekxa2 | 160 | Aspartate carbamoyltransferase catalytic subunit { | 92.26 | |
| d1l7da2 | 194 | Nicotinamide nucleotide transhydrogenase dI compon | 92.24 | |
| d1iuka_ | 136 | Hypothetical protein TT1466 {Thermus thermophilus | 92.08 | |
| d1dxha2 | 185 | Ornithine transcarbamoylase {Pseudomonas aeruginos | 91.94 | |
| d1t4ba1 | 146 | Aspartate beta-semialdehyde dehydrogenase {Escheri | 91.73 | |
| d2g5ca1 | 110 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 91.4 | |
| d2pd4a1 | 274 | Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2 | 91.2 | |
| d1vkna1 | 176 | N-acetyl-gamma-glutamyl-phosphate reductase ArgC { | 90.99 | |
| d1seza1 | 373 | Protoporphyrinogen oxidase {Tobacco (Nicotiana tab | 90.77 | |
| d1tuga1 | 310 | Aspartate carbamoyltransferase catalytic subunit { | 90.76 | |
| d2o23a1 | 248 | Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho | 90.76 | |
| d1onfa2 | 117 | Glutathione reductase {Plasmodium falciparum [TaxI | 90.62 | |
| d2d59a1 | 139 | Hypothetical protein PH1109 {Pyrococcus horikoshii | 90.61 | |
| d1ae1a_ | 258 | Tropinone reductase {Jimsonweed (Datura stramonium | 90.57 | |
| d1cdoa2 | 175 | Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI | 90.54 | |
| d1v59a2 | 122 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 90.46 | |
| d2csua1 | 129 | Acetate-CoA ligase alpha chain, AcdA, N-terminal d | 90.29 | |
| d1fcda1 | 186 | Flavocytochrome c sulfide dehydrogenase, FCSD, fla | 90.16 | |
| d1gesa2 | 116 | Glutathione reductase {Escherichia coli [TaxId: 56 | 90.08 | |
| d1yb1a_ | 244 | 17-beta-hydroxysteroid dehydrogenase type XI {Huma | 89.89 | |
| d1mo9a2 | 121 | NADH-dependent 2-ketopropyl coenzyme M oxidoreduct | 89.85 | |
| d2gz1a1 | 154 | Aspartate beta-semialdehyde dehydrogenase {Strepto | 89.63 | |
| d1ebda2 | 117 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 89.6 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 89.52 | |
| d1gtea4 | 196 | Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su | 89.49 | |
| d1vl6a1 | 222 | Malate oxidoreductase (malic enzyme) {Thermotoga m | 89.47 | |
| d3grsa2 | 125 | Glutathione reductase {Human (Homo sapiens) [TaxId | 89.14 | |
| d2hjsa1 | 144 | Usg-1 protein homolog PA3116 {Pseudomonas aerugino | 88.85 | |
| d1diha1 | 162 | Dihydrodipicolinate reductase {Escherichia coli [T | 88.73 | |
| d1d7ya2 | 121 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 88.69 | |
| d1obba1 | 171 | Alpha-glucosidase AglA {Thermotoga maritima [TaxId | 88.58 | |
| d1u8xx1 | 167 | Maltose-6'-phosphate glucosidase GlvA {Bacillus su | 88.53 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 88.47 | |
| d1nhpa2 | 123 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 88.18 | |
| d1mb4a1 | 147 | Aspartate beta-semialdehyde dehydrogenase {Vibrio | 88.08 | |
| d1qyda_ | 312 | Pinoresinol-lariciresinol reductase {Giant arborvi | 88.04 | |
| d2cvoa1 | 183 | Putative semialdehyde dehydrogenase {Rice (Oryza s | 87.98 | |
| d2q46a1 | 252 | Hypothetical protein At5g02240 (T7H20_290) {Thale | 87.94 | |
| d1phza1 | 97 | Phenylalanine hydroxylase N-terminal domain {Rat ( | 87.82 | |
| d3lada2 | 119 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 87.7 | |
| d1xu9a_ | 269 | 11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom | 87.49 | |
| d5mdha1 | 154 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 87.47 | |
| d1ulua_ | 256 | Enoyl-ACP reductase {Thermus thermophilus [TaxId: | 87.35 | |
| d1h6va2 | 122 | Mammalian thioredoxin reductase {Rat (Rattus norve | 87.28 | |
| d1dxla2 | 123 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 87.21 | |
| d1xhca2 | 122 | NADH oxidase /nitrite reductase {Pyrococcus furios | 87.21 | |
| d1ps9a3 | 179 | 2,4-dienoyl-CoA reductase, middle domain {Escheric | 87.13 | |
| d1qsga_ | 258 | Enoyl-ACP reductase {Escherichia coli [TaxId: 562] | 87.04 | |
| d1yl7a1 | 135 | Dihydrodipicolinate reductase {Mycobacterium tuber | 86.99 | |
| d1ojta2 | 125 | Dihydrolipoamide dehydrogenase {Neisseria meningit | 86.8 | |
| d1jw9b_ | 247 | Molybdenum cofactor biosynthesis protein MoeB {Esc | 86.76 | |
| d1db3a_ | 357 | GDP-mannose 4,6-dehydratase {Escherichia coli [Tax | 86.75 | |
| d1hdca_ | 254 | 3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre | 86.71 | |
| d2dt5a2 | 126 | Transcriptional repressor Rex, C-terminal domain { | 86.26 | |
| d1q1ra2 | 133 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 86.21 | |
| d1ydea1 | 250 | Retinal dehydrogenase/reductase 3 {Human (Homo sap | 86.06 | |
| d1h5qa_ | 260 | Mannitol dehydrogenase {Mushroom (Agaricus bisporu | 86.01 | |
| d1pr9a_ | 244 | Carbonyl reductase {Human (Homo sapiens) [TaxId: 9 | 85.93 | |
| d1lvla2 | 115 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 85.52 | |
| d1pjca2 | 193 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 85.31 | |
| d1vm6a3 | 128 | Dihydrodipicolinate reductase {Thermotoga maritima | 85.28 | |
| d1xgka_ | 350 | Negative transcriptional regulator NmrA {Aspergill | 85.1 | |
| d1c0pa1 | 268 | D-aminoacid oxidase, N-terminal domain {Rhodotorul | 84.91 | |
| d2g17a1 | 179 | N-acetyl-gamma-glutamyl-phosphate reductase ArgC { | 84.88 | |
| d1zema1 | 260 | Xylitol dehydrogenase {Gluconobacter oxydans [TaxI | 84.79 | |
| d2f1ka1 | 114 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 84.68 | |
| d1w6ua_ | 294 | 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H | 84.63 | |
| d2ae2a_ | 259 | Tropinone reductase {Jimsonweed (Datura stramonium | 84.61 | |
| d2iida1 | 370 | L-aminoacid oxidase {Malayan pit viper (Calloselas | 84.51 | |
| d1dssg1 | 169 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 84.14 | |
| d2a4ka1 | 241 | beta-keto acyl carrier protein reductase {Thermus | 83.93 | |
| d1cyda_ | 242 | Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1 | 83.81 | |
| d2voua1 | 265 | Dihydroxypyridine hydroxylase DhpH {Arthrobacter n | 83.4 | |
| d1vl8a_ | 251 | Gluconate 5-dehydrogenase {Thermotoga maritima [Ta | 83.34 | |
| d1vl0a_ | 281 | DTDP-4-dehydrorhamnose reductase RfbD {Clostridium | 83.23 | |
| d1xq1a_ | 259 | Tropinone reductase {Thale cress (Arabidopsis thal | 83.08 | |
| d1q7ba_ | 243 | beta-keto acyl carrier protein reductase {Escheric | 82.98 | |
| d1xa0a2 | 176 | B. subtilis YhfP homologue {Bacillus stearothermop | 82.87 | |
| d2bi7a1 | 314 | UDP-galactopyranose mutase, N-terminal domain {Kle | 82.87 | |
| d1duvg2 | 183 | Ornithine transcarbamoylase {Escherichia coli [Tax | 82.76 | |
| d2g82a1 | 168 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 82.56 | |
| d1tt7a2 | 167 | Hypothetical protein YhfP {Bacillus subtilis [TaxI | 82.18 | |
| d1nffa_ | 244 | Putative oxidoreductase Rv2002 {Mycobacterium tube | 82.14 | |
| d1vj1a2 | 187 | Putative zinc-binding alcohol dehydrogenase {Mouse | 82.06 | |
| d1iy8a_ | 258 | Levodione reductase {Corynebacterium aquaticum [Ta | 82.04 | |
| d1d7oa_ | 297 | Enoyl-ACP reductase {Oil seed rape (Brassica napus | 81.71 | |
| d1djqa3 | 233 | Trimethylamine dehydrogenase, middle domain {Methy | 81.57 | |
| d1gado1 | 166 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 81.55 | |
| d1sbya1 | 254 | Drosophila alcohol dehydrogenase {Fly (Drosophila | 81.54 | |
| d1uzma1 | 237 | beta-keto acyl carrier protein reductase {Mycobact | 80.87 | |
| d2c5aa1 | 363 | GDP-mannose-3', 5'-epimerase {Thale cress (Arabido | 80.57 | |
| d1gu7a2 | 189 | 2,4-dienoyl-CoA reductase {Yeast (Candida tropical | 80.44 | |
| d2ew8a1 | 247 | (s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb | 80.32 | |
| d1rkxa_ | 356 | CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc | 80.31 | |
| d1hdgo1 | 169 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 80.29 | |
| d1k2wa_ | 256 | Sorbitol dehydrogenase {Rhodobacter sphaeroides [T | 80.25 | |
| d2h7ma1 | 268 | Enoyl-ACP reductase {Mycobacterium tuberculosis, T | 80.14 |
| >d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=100.00 E-value=3.7e-49 Score=379.89 Aligned_cols=184 Identities=46% Similarity=0.797 Sum_probs=178.1
Q ss_pred ChHHHHHHHHHHHHHHHhchHHHHHHHHcCccccccccceeccCCEEEEEecChhHHHHHHHhhcCCCEEEEECCCCChh
Q 007512 154 NTVAAAEHGIALLAAMARNVAQADASVKAGKWQRNKYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPAD 233 (600)
Q Consensus 154 ~~~~vAE~~l~lll~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~~~ 233 (600)
|+.+||||++++||+++|+++++++.+++|.|.+..+.+.++.||++||+|+|.||+.+|+++++|||+|++|||+....
T Consensus 1 N~~sVAE~~~~liL~~~R~i~~~~~~~~~~~W~~~~~~~~~l~~k~vgiiG~G~IG~~va~~~~~fg~~v~~~d~~~~~~ 80 (184)
T d1ygya1 1 NIHSAAEHALALLLAASRQIPAADASLREHTWKRSSFSGTEIFGKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYVSPA 80 (184)
T ss_dssp SHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCGGGCCBCCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSCHH
T ss_pred CchHHHHHHHHHHHHHHcCHHHHHHHHHhCCCCccccccccccceeeeeccccchhHHHHHHhhhccceEEeecCCCChh
Confidence 67899999999999999999999999999999987788999999999999999999999999999999999999998877
Q ss_pred HHHHcCCcccCHHHHhccCCEEEEecCCCccccccccHhHhccCCCceEEEEccCCccccHHHHHHhHhcCCceEEEEec
Q 007512 234 RARAIGVDLVSFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVIDEEALVRALDSGRVAQAALDV 313 (600)
Q Consensus 234 ~a~~~g~~~~~l~ell~~aDvV~l~~Pl~~~t~~li~~~~l~~mk~gailvNvarg~ivde~aL~~aL~~g~i~ga~lDv 313 (600)
.....+++..++++++++||+|++|+|+|++|+++||++.|++||+|++|||+|||++||++||+++|++|+|+||++||
T Consensus 81 ~~~~~~~~~~~l~ell~~sDiv~~~~Plt~~T~~lin~~~l~~mk~~a~lIN~sRG~iVde~aL~~aL~~~~i~~a~lDV 160 (184)
T d1ygya1 81 RAAQLGIELLSLDDLLARADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAARGGLVDEAALADAITGGHVRAAGLDV 160 (184)
T ss_dssp HHHHHTCEECCHHHHHHHCSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHTSSEEEEEESS
T ss_pred HHhhcCceeccHHHHHhhCCEEEEcCCCCchhhhhhhHHHHhhhCCCceEEEecchhhhhhHHHHHHHhcCcEeEEEEeC
Confidence 77888888889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCccccCCcEEEcCCCC
Q 007512 314 FTEEPPPADSKLVQHERVTVTPHLG 338 (600)
Q Consensus 314 ~~~EP~~~~~~L~~~~nvilTPH~~ 338 (600)
|++||++ ++|||++||+++|||+|
T Consensus 161 ~~~EP~~-~~~l~~~~nviiTPHIG 184 (184)
T d1ygya1 161 FATEPCT-DSPLFELAQVVVTPHLG 184 (184)
T ss_dssp CSSSSCS-CCGGGGCTTEEECSSCS
T ss_pred CCCCCCC-CchHhcCCCEEECCCCC
Confidence 9999985 89999999999999997
|
| >d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Transcription corepressor CtbP species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]
Probab=100.00 E-value=7.3e-47 Score=366.10 Aligned_cols=184 Identities=30% Similarity=0.524 Sum_probs=171.7
Q ss_pred HHHHHHHHHHHHHHHhchHHHHHHHHcCcccccc-------ccceeccCCEEEEEecChhHHHHHHHhhcCCCEEEEECC
Q 007512 156 VAAAEHGIALLAAMARNVAQADASVKAGKWQRNK-------YVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDP 228 (600)
Q Consensus 156 ~~vAE~~l~lll~~~R~i~~~~~~~~~g~W~~~~-------~~g~~l~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~ 228 (600)
++||||++++||+++|+++.+++.+++|.|.++. ..|.+|+|||+||||+|+||+.+|+++++|||+|++|||
T Consensus 1 e~VAE~ai~liL~l~R~i~~~~~~~~~g~w~~~~~~~~~~~~~~~eL~gktvgIiG~G~IG~~va~~l~~fg~~v~~~d~ 80 (193)
T d1mx3a1 1 EETADSTLCHILNLYRRATWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVALRAKAFGFNVLFYDP 80 (193)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHTTCCCCSHHHHHHHTTTCCCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECT
T ss_pred CcHHHHHHHHHHHHHhCHHHHHHHHHcCCcccccccccccccCceeeeCceEEEeccccccccceeeeeccccceeeccC
Confidence 5799999999999999999999999999998642 458899999999999999999999999999999999999
Q ss_pred CCChhHHHHcCCcc-cCHHHHhccCCEEEEecCCCccccccccHhHhccCCCceEEEEccCCccccHHHHHHhHhcCCce
Q 007512 229 YAPADRARAIGVDL-VSFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVIDEEALVRALDSGRVA 307 (600)
Q Consensus 229 ~~~~~~a~~~g~~~-~~l~ell~~aDvV~l~~Pl~~~t~~li~~~~l~~mk~gailvNvarg~ivde~aL~~aL~~g~i~ 307 (600)
+.........++.. .++++++++||+|++|+|++++|+++++++.|++||+|++|||+|||++||++||+++|++|++.
T Consensus 81 ~~~~~~~~~~~~~~~~~l~~ll~~sD~i~~~~plt~~T~~li~~~~l~~mk~~a~lIN~sRG~ivde~aL~~aL~~~~i~ 160 (193)
T d1mx3a1 81 YLSDGVERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGRIR 160 (193)
T ss_dssp TSCTTHHHHHTCEECSSHHHHHHHCSEEEECCCCCTTCTTSBSHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHHTSEE
T ss_pred cccccchhhhccccccchhhccccCCEEEEeecccccchhhhhHHHHhccCCCCeEEecCCceEEcHHHHHHHHHcCCce
Confidence 98666666667754 48999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeccCCCCCC-CCCccccCCcEEEcCCCCC
Q 007512 308 QAALDVFTEEPPP-ADSKLVQHERVTVTPHLGA 339 (600)
Q Consensus 308 ga~lDv~~~EP~~-~~~~L~~~~nvilTPH~~~ 339 (600)
||++|||+.||++ .++||+++||+++|||+|+
T Consensus 161 ~a~lDV~~~EP~~~~~~~l~~~~nvi~TPHiA~ 193 (193)
T d1mx3a1 161 GAALDVHESEPFSFSQGPLKDAPNLICTPHAAW 193 (193)
T ss_dssp EEEESCCSSSSCCTTSSTTTTCSSEEECSSCTT
T ss_pred EEEEEcCCCCCCCCCchhHHcCCCEEEcCCcCc
Confidence 9999999999976 5789999999999999975
|
| >d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-glycerate dehydrogenase species: Hyphomicrobium methylovorum [TaxId: 84]
Probab=100.00 E-value=8.4e-47 Score=365.17 Aligned_cols=185 Identities=32% Similarity=0.537 Sum_probs=169.8
Q ss_pred hHHHHHHHHHHHHHHHhchHHHHHHHHcCccccc---cccceeccCCEEEEEecChhHHHHHHHhhcCCCEEEEECCCCC
Q 007512 155 TVAAAEHGIALLAAMARNVAQADASVKAGKWQRN---KYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAP 231 (600)
Q Consensus 155 ~~~vAE~~l~lll~~~R~i~~~~~~~~~g~W~~~---~~~g~~l~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~ 231 (600)
+.+||||+++|||+++|+++++++.+++|.|..+ .+.|.+++|+|+||||+|+||+.+|+++++|||+|++||++..
T Consensus 2 t~AvAE~ai~liL~~~R~i~~~~~~~r~g~w~~~~~~~~~~~~l~g~tvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~ 81 (191)
T d1gdha1 2 TVATAEIAMLLLLGSARRAGEGEKMIRTRSWPGWEPLELVGEKLDNKTLGIYGFGSIGQALAKRAQGFDMDIDYFDTHRA 81 (191)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCCTTTTCBCCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSCC
T ss_pred CHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCcCCccccccceecccceEEeecccchHHHHHHHHhhcccccccccccc
Confidence 5799999999999999999999999999999643 4568999999999999999999999999999999999999874
Q ss_pred -hhHHHH-cCCcccCHHHHhccCCEEEEecCCCccccccccHhHhccCCCceEEEEccCCccccHHHHHHhHhcCCceEE
Q 007512 232 -ADRARA-IGVDLVSFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVIDEEALVRALDSGRVAQA 309 (600)
Q Consensus 232 -~~~a~~-~g~~~~~l~ell~~aDvV~l~~Pl~~~t~~li~~~~l~~mk~gailvNvarg~ivde~aL~~aL~~g~i~ga 309 (600)
...... .+....++++++++||+|++|+|++++|+++||++.|++||+|++|||+|||++||++||+++|++|+|+||
T Consensus 82 ~~~~~~~~~~~~~~~l~~ll~~sD~v~l~~plt~~T~~li~~~~l~~mk~~a~lIN~sRG~ivde~aL~~aL~~g~i~~a 161 (191)
T d1gdha1 82 SSSDEASYQATFHDSLDSLLSVSQFFSLNAPSTPETRYFFNKATIKSLPQGAIVVNTARGDLVDNELVVAALEAGRLAYA 161 (191)
T ss_dssp CHHHHHHHTCEECSSHHHHHHHCSEEEECCCCCTTTTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEE
T ss_pred ccchhhcccccccCCHHHHHhhCCeEEecCCCCchHhheecHHHhhCcCCccEEEecCCccchhhHHHHHHHHcCCceEE
Confidence 333233 334567899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeccCCCCCCCCCccccCCcEEEcCCCCCC
Q 007512 310 ALDVFTEEPPPADSKLVQHERVTVTPHLGAS 340 (600)
Q Consensus 310 ~lDv~~~EP~~~~~~L~~~~nvilTPH~~~~ 340 (600)
++|||+.||+ .++|||++||+++|||+|++
T Consensus 162 ~lDV~~~EP~-~~~~l~~~~nvi~TPHiasa 191 (191)
T d1gdha1 162 GFDVFAGEPN-INEGYYDLPNTFLFPHIGSA 191 (191)
T ss_dssp EESCCTTTTS-CCTTGGGCTTEEECSSCTTC
T ss_pred EEECCCCCCC-CCchHHcCCCEEECCccccC
Confidence 9999999995 68999999999999999874
|
| >d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Formate dehydrogenase species: Pseudomonas sp., strain 101 [TaxId: 306]
Probab=100.00 E-value=1.5e-45 Score=355.85 Aligned_cols=184 Identities=28% Similarity=0.483 Sum_probs=171.2
Q ss_pred HHHHHHHHHHHHHHHhchHHHHHHHHcCcccccc--ccceeccCCEEEEEecChhHHHHHHHhhcCCCEEEEECCCC-Ch
Q 007512 156 VAAAEHGIALLAAMARNVAQADASVKAGKWQRNK--YVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYA-PA 232 (600)
Q Consensus 156 ~~vAE~~l~lll~~~R~i~~~~~~~~~g~W~~~~--~~g~~l~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~-~~ 232 (600)
.+||||+++++|+++|++.+++..+++|+|++.. ..+.++.|+++||||+|+||+.+|+++++|||+|.+||++. +.
T Consensus 1 isVAE~~l~~iL~~~R~~~~~~~~~~~g~w~~~~~~~~~~~l~~~~vgiiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~ 80 (188)
T d2naca1 1 ISVAEHVVMMILSLVRNYLPSHEWARKGGWNIADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRLPE 80 (188)
T ss_dssp HHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHTTCCCCTTCEEEEECCSHHHHHHHHHHGGGTCEEEEECSSCCCH
T ss_pred CcHHHHHHHHHHHHHhCHHHHHHHHHhCCCCCcccCCcceeccccceeeccccccchhhhhhhhccCceEEEEeeccccc
Confidence 4799999999999999999999999999997643 24779999999999999999999999999999999999976 44
Q ss_pred hHHHHcCCc-ccCHHHHhccCCEEEEecCCCccccccccHhHhccCCCceEEEEccCCccccHHHHHHhHhcCCceEEEE
Q 007512 233 DRARAIGVD-LVSFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVIDEEALVRALDSGRVAQAAL 311 (600)
Q Consensus 233 ~~a~~~g~~-~~~l~ell~~aDvV~l~~Pl~~~t~~li~~~~l~~mk~gailvNvarg~ivde~aL~~aL~~g~i~ga~l 311 (600)
......++. ..++++++++||+|++|+|++++|+++|+++.|++||+|++|||+|||++||++||+++|++|++.||++
T Consensus 81 ~~~~~~~~~~~~~l~~~l~~sD~v~~~~plt~~T~~li~~~~l~~mk~ga~lIN~aRG~ivd~~aL~~aL~~g~i~ga~l 160 (188)
T d2naca1 81 SVEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTARGKLCDRDAVARALESGRLAGYAG 160 (188)
T ss_dssp HHHHHHTCEECSSHHHHGGGCSEEEECSCCCTTTTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHTTSEEEEEE
T ss_pred cccccccccccCCHHHHHHhccchhhcccccccchhhhHHHHHHhCCCCCEEEecCchhhhhHHHHHHHHhCCCceeEEE
Confidence 455555554 5689999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCCCCCCCCCccccCCcEEEcCCCCC
Q 007512 312 DVFTEEPPPADSKLVQHERVTVTPHLGA 339 (600)
Q Consensus 312 Dv~~~EP~~~~~~L~~~~nvilTPH~~~ 339 (600)
|||++||++.++||+++||+++|||+||
T Consensus 161 DV~~~EP~~~~~~l~~~~nv~~TPHiaG 188 (188)
T d2naca1 161 DVWFPQPAPKDHPWRTMPYNGMTPHISG 188 (188)
T ss_dssp SCCSSSSCCTTCGGGTSTTBCCCCSCTT
T ss_pred eCCCCCCCCCCChHHcCCCeEEccccCc
Confidence 9999999999999999999999999986
|
| >d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-lactate dehydrogenase species: Lactobacillus helveticus [TaxId: 1587]
Probab=100.00 E-value=9.4e-46 Score=359.23 Aligned_cols=183 Identities=32% Similarity=0.476 Sum_probs=169.8
Q ss_pred HHHHHHHHHHHHHHHhchHHHHHHHHcCccccccccceeccCCEEEEEecChhHHHHHHHhhcCCCEEEEECCCCChhHH
Q 007512 156 VAAAEHGIALLAAMARNVAQADASVKAGKWQRNKYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPADRA 235 (600)
Q Consensus 156 ~~vAE~~l~lll~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~~~~a 235 (600)
++||||+++++|+++|+++..++.+++|+|.+..+.|++|+||||||||+|.||+.+|+++++|||+|++|||+.....
T Consensus 2 ~aVAE~~l~~~l~l~r~~~~~~~~~~~~~~~w~~~~g~el~gk~vgIiG~G~IG~~va~~l~~fg~~V~~~d~~~~~~~- 80 (197)
T d1j4aa1 2 NAIAEHAAIQAARILRQDKAMDEKVARHDLRWAPTIGREVRDQVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFRNPEL- 80 (197)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHHTTBCCCTTCCBCCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCHHH-
T ss_pred CHHHHHHHHHHHHHHhCcHHHHHHHHhCCCCcCCCcCccccCCeEEEecccccchhHHHhHhhhcccccccCccccccc-
Confidence 6899999999999999999999999999988777789999999999999999999999999999999999999876543
Q ss_pred HHcCCcccCHHHHhccCCEEEEecCCCccccccccHhHhccCCCceEEEEccCCccccHHHHHHhHhcCCceEEEEeccC
Q 007512 236 RAIGVDLVSFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVIDEEALVRALDSGRVAQAALDVFT 315 (600)
Q Consensus 236 ~~~g~~~~~l~ell~~aDvV~l~~Pl~~~t~~li~~~~l~~mk~gailvNvarg~ivde~aL~~aL~~g~i~ga~lDv~~ 315 (600)
...++...++++++++||+|++|+|++++|+++|+++.|++||+|++|||+|||++||+++|+++|++|++.||++|||+
T Consensus 81 ~~~~~~~~~l~~~l~~sDii~~~~plt~~T~~li~~~~l~~mk~~a~lIN~sRG~ivde~aL~~aL~~~~i~~a~lDV~~ 160 (197)
T d1j4aa1 81 EKKGYYVDSLDDLYKQADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVSRGPLVDTDAVIRGLDSGKIFGYAMDVYE 160 (197)
T ss_dssp HHTTCBCSCHHHHHHHCSEEEECSCCCGGGTTCBSHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCT
T ss_pred ccceeeeccccccccccccccccCCccccccccccHHHHhhhCCccEEEecCchhhhhhHHHHHHHhcccchheeeeccc
Confidence 34566777999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCC-------------CCCCccccCCcEEEcCCCCC
Q 007512 316 EEPP-------------PADSKLVQHERVTVTPHLGA 339 (600)
Q Consensus 316 ~EP~-------------~~~~~L~~~~nvilTPH~~~ 339 (600)
.||. +.++||+.+|||++|||+|+
T Consensus 161 ~Ep~~~~~~~~~~~~p~~~~~~L~~~~nviiTPHiA~ 197 (197)
T d1j4aa1 161 GEVGIFNEDWEGKEFPDARLADLIARPNVLVTPKTAF 197 (197)
T ss_dssp TCTTTTTSBCTTSCCSCHHHHHHHHCTTEEECSSCTT
T ss_pred cCCcccccccccccCCccchhhhhcCCCEEeCcccCc
Confidence 9953 33467999999999999974
|
| >d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-2-hydroxyisocaproate dehydrogenase species: Lactobacillus casei [TaxId: 1582]
Probab=100.00 E-value=4e-46 Score=362.82 Aligned_cols=184 Identities=29% Similarity=0.513 Sum_probs=168.6
Q ss_pred hHHHHHHHHHHHHHHHhchHHHHHHHHcCccccc-cccceeccCCEEEEEecChhHHHHHHHhhcCCCEEEEECCCCChh
Q 007512 155 TVAAAEHGIALLAAMARNVAQADASVKAGKWQRN-KYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPAD 233 (600)
Q Consensus 155 ~~~vAE~~l~lll~~~R~i~~~~~~~~~g~W~~~-~~~g~~l~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~~~ 233 (600)
..+||||++++||++.|+++++++.+++|.|++. .+.|++|.||||||||+|+||+.+|+++++|||+|++|||+....
T Consensus 2 p~aVAE~~l~~iL~l~R~~~~~~~~~~~g~w~~~~~~~~~~l~~ktvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~ 81 (199)
T d1dxya1 2 PAAIAEFALTDTLYLLRNMGKVQAQLQAGDYEKAGTFIGKELGQQTVGVMGTGHIGQVAIKLFKGFGAKVIAYDPYPMKG 81 (199)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHHHHHHHTTCHHHHTCCCCCCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSS
T ss_pred ChHHHHHHHHHHHHHHhCHHHHHHHHHhCCCCcccCcccccccceeeeeeecccccccccccccccceeeeccCCccchh
Confidence 4789999999999999999999999999999864 457899999999999999999999999999999999999986432
Q ss_pred HHHHcCCcccCHHHHhccCCEEEEecCCCccccccccHhHhccCCCceEEEEccCCccccHHHHHHhHhcCCceEEEEec
Q 007512 234 RARAIGVDLVSFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVIDEEALVRALDSGRVAQAALDV 313 (600)
Q Consensus 234 ~a~~~g~~~~~l~ell~~aDvV~l~~Pl~~~t~~li~~~~l~~mk~gailvNvarg~ivde~aL~~aL~~g~i~ga~lDv 313 (600)
....+...++++++++||+|++|+|++++|+++|+++.|++||+|++|||+|||++||++||+++|++|+|.||++||
T Consensus 82 --~~~~~~~~~l~~l~~~~D~v~~~~plt~~T~~li~~~~l~~mk~~a~lIN~aRG~vvde~aL~~aL~~g~i~ga~lDV 159 (199)
T d1dxya1 82 --DHPDFDYVSLEDLFKQSDVIDLHVPGIEQNTHIINEAAFNLMKPGAIVINTARPNLIDTQAMLSNLKSGKLAGVGIDT 159 (199)
T ss_dssp --CCTTCEECCHHHHHHHCSEEEECCCCCGGGTTSBCHHHHHHSCTTEEEEECSCTTSBCHHHHHHHHHTTSEEEEEESS
T ss_pred --hhcchhHHHHHHHHHhcccceeeecccccccccccHHHhhccCCceEEEecccHhhhhhHHHHHHHhcCCcceEeccc
Confidence 223456779999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCC-------------CCCccccCCcEEEcCCCCCC
Q 007512 314 FTEEPPP-------------ADSKLVQHERVTVTPHLGAS 340 (600)
Q Consensus 314 ~~~EP~~-------------~~~~L~~~~nvilTPH~~~~ 340 (600)
|+.||++ ..++|+.+|||++|||+||+
T Consensus 160 ~~~EP~~~~~~~~~~~~~~p~~~~L~~~~nviiTPHiagy 199 (199)
T d1dxya1 160 YEYETEDLLNLAKHGSFKDPLWDELLGMPNVVLSPHIAYY 199 (199)
T ss_dssp CTTHHHHHHHHHHHSSCCCHHHHHHHTCTTEEECSSCTTC
T ss_pred cCCCCcchhhccccccccChhhHHHhcCCCEEECCccccC
Confidence 9999852 23578899999999999986
|
| >d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.6e-45 Score=354.14 Aligned_cols=184 Identities=32% Similarity=0.473 Sum_probs=160.1
Q ss_pred ChHHHHHHHHHHHHHHHhchHHHHHHHHcCccccccccceeccCCEEEEEecChhHHHHHHHhhcCCCEEEEECCCCChh
Q 007512 154 NTVAAAEHGIALLAAMARNVAQADASVKAGKWQRNKYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPAD 233 (600)
Q Consensus 154 ~~~~vAE~~l~lll~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~~~ 233 (600)
|+.+||||+++++|++.|++++++..+++|.|.+....+.++.|++|||||+|.||+.+|+++++|||+|++||++....
T Consensus 1 Na~aVAE~~l~~il~l~R~~~~~~~~~~~~~w~~~~~~~~~l~~~~vgiiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~ 80 (188)
T d1sc6a1 1 NTRSVAELVIGELLLLLRGVPEANAKAHRGVGNKLAAGSFEARGKKLGIIGYGHIGTQLGILAESLGMYVYFYDIENKLP 80 (188)
T ss_dssp THHHHHHHHHHHHHHHHHTHHHHHHHHHHTCCC-----CCCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCC
T ss_pred CCHHHHHHHHHHHHHHHhChHHHHHHHHhCCCcccccccccccceEEEEeecccchhhhhhhcccccceEeeccccccch
Confidence 78999999999999999999999999999999987777889999999999999999999999999999999999876432
Q ss_pred HHHHcCCcccCHHHHhccCCEEEEecCCCccccccccHhHhccCCCceEEEEccCCccccHHHHHHhHhcCCceEEEEec
Q 007512 234 RARAIGVDLVSFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVIDEEALVRALDSGRVAQAALDV 313 (600)
Q Consensus 234 ~a~~~g~~~~~l~ell~~aDvV~l~~Pl~~~t~~li~~~~l~~mk~gailvNvarg~ivde~aL~~aL~~g~i~ga~lDv 313 (600)
.. ......++++++++||+|++|+|++++|+++|+++.|++||+|++|||+|||++||+++|+++|+++++.||++||
T Consensus 81 ~~--~~~~~~~l~ell~~sDii~i~~plt~~T~~li~~~~l~~mk~~a~lIN~aRG~lvde~aL~~aL~~~~~~~a~lDV 158 (188)
T d1sc6a1 81 LG--NATQVQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVDIPALADALASKHLAGAAIDV 158 (188)
T ss_dssp CT--TCEECSCHHHHHHHCSEEEECCCSSTTTTTCBCHHHHHHSCTTEEEEECSCSSSBCHHHHHHHHHTTSEEEEEEEC
T ss_pred hh--hhhhhhhHHHHHhhccceeecccCCcchhhhccHHHHhhCCCCCEEEEcCcHHhhhhHHHHHHHHcCCceEEEEec
Confidence 21 2224458999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCC----CCCccccCCcEEEcCCCCC
Q 007512 314 FTEEPPP----ADSKLVQHERVTVTPHLGA 339 (600)
Q Consensus 314 ~~~EP~~----~~~~L~~~~nvilTPH~~~ 339 (600)
|+.||.. -.+||+++||+++|||+||
T Consensus 159 ~~~EP~~~~~~~~~~l~~~~nv~~TPHiaG 188 (188)
T d1sc6a1 159 FPTEPATNSDPFTSPLAEFDNVLLTPHIGG 188 (188)
T ss_dssp ---------CTTTGGGTTCTTEEEECCCSC
T ss_pred CCCCCCCcCCccchhHhcCCCEEEcCCcCc
Confidence 9999973 3468999999999999986
|
| >d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Putative formate dehydrogenase species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=100.00 E-value=4.2e-44 Score=343.34 Aligned_cols=180 Identities=24% Similarity=0.313 Sum_probs=164.3
Q ss_pred hHHHHHHHHHHHHHHHhchHHHHHHHHcCccccccccceeccCCEEEEEecChhHHHHHHHhhcCCCEEEEECCCCChhH
Q 007512 155 TVAAAEHGIALLAAMARNVAQADASVKAGKWQRNKYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPADR 234 (600)
Q Consensus 155 ~~~vAE~~l~lll~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~~~~ 234 (600)
+++||||+++++|+++|++.++++.+++|+|.+.. ...++.||||||||+|.||+.+|+++++|||+|++|||+....
T Consensus 1 A~aVAE~~~~liL~~~R~i~~~~~~~~~~~w~~~~-~~~~l~gk~vgIiG~G~IG~~va~~l~~~g~~v~~~d~~~~~~- 78 (181)
T d1qp8a1 1 ADAVAEFALALLLAPYKRIIQYGEKMKRGDYGRDV-EIPLIQGEKVAVLGLGEIGTRVGKILAALGAQVRGFSRTPKEG- 78 (181)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCS-CCCCCTTCEEEEESCSTHHHHHHHHHHHTTCEEEEECSSCCCS-
T ss_pred CchHHHHHHHHHHHHHhCHHHHHHHHHcCCCCCCC-CCCcccCceEEEeccccccccceeeeecccccccccccccccc-
Confidence 57899999999999999999999999999998754 3457999999999999999999999999999999999986321
Q ss_pred HHHcCCcccCHHHHhccCCEEEEecCCCccccccccHhHhccCCCceEEEEccCCccccHHHHHHhHhcCCceEEEEecc
Q 007512 235 ARAIGVDLVSFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVIDEEALVRALDSGRVAQAALDVF 314 (600)
Q Consensus 235 a~~~g~~~~~l~ell~~aDvV~l~~Pl~~~t~~li~~~~l~~mk~gailvNvarg~ivde~aL~~aL~~g~i~ga~lDv~ 314 (600)
......++++++++||+|++|+|++++|+++|+++.|++||+|++|||+|||+++|+++|+++|+++++.||++|||
T Consensus 79 ---~~~~~~~l~ell~~sDiv~~~~pl~~~t~~li~~~~l~~mk~~ailIN~~RG~ivd~~aL~~aL~~~~i~~aalDV~ 155 (181)
T d1qp8a1 79 ---PWRFTNSLEEALREARAAVCALPLNKHTRGLVKYQHLALMAEDAVFVNVGRAEVLDRDGVLRILKERPQFIFASDVW 155 (181)
T ss_dssp ---SSCCBSCSHHHHTTCSEEEECCCCSTTTTTCBCHHHHTTSCTTCEEEECSCGGGBCHHHHHHHHHHCTTCEEEESCC
T ss_pred ---ceeeeechhhhhhccchhhcccccccccccccccceeeeccccceEEeccccccccchhhhhhcccCcEEEEEEecC
Confidence 11234589999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCC-CCCCCCccccCCcEEEcCCCCC
Q 007512 315 TEE-PPPADSKLVQHERVTVTPHLGA 339 (600)
Q Consensus 315 ~~E-P~~~~~~L~~~~nvilTPH~~~ 339 (600)
+.| |.+.++||+++|||++|||+||
T Consensus 156 ~~e~p~~~~~~l~~~~nvi~TPHiaG 181 (181)
T d1qp8a1 156 WGRNDFAKDAEFFSLPNVVATPWVAG 181 (181)
T ss_dssp TTTTCCGGGHHHHTSTTEEECCSCSS
T ss_pred CCCCCCCCCChHHcCCCEEeccccCc
Confidence 765 5567889999999999999986
|
| >d1ygya2 c.23.12.1 (A:3-98,A:283-316) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Formate/glycerate dehydrogenase catalytic domain-like family: Formate/glycerate dehydrogenases, substrate-binding domain domain: Phosphoglycerate dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.94 E-value=4.4e-28 Score=219.34 Aligned_cols=129 Identities=38% Similarity=0.476 Sum_probs=122.0
Q ss_pred CCCeEEEecCCCHhHHHHhcccCcEEEccCCCHhHHhhhcCCceEEEEcCCCCCCHHHHhccCCCceEEEEcCcccCccC
Q 007512 57 SKPTVLIAEKLGQAGLDLLNEFANVDCAYNLSPEELCTKISLCDALIVRSGTKVNRDVFESSAGRLKVVGRAGVGIDNVD 136 (600)
Q Consensus 57 ~~~~ilv~~~l~~~~~~~l~~~~~v~~~~~~~~~el~~~i~~~d~li~~~~~~~~~~~l~~~~~~Lk~I~~~g~G~d~iD 136 (600)
+|||||++++++++++++|++.+++.+....+++|+.+.++++|++++++.+++++++++++ |+||+|++.|+|+||||
T Consensus 1 sMpkvli~~~~~~~~~~~L~~~~~v~~~~~~~~~el~~~~~~~d~ii~~~~~~i~~~~l~~~-p~Lk~I~~~g~G~d~ID 79 (130)
T d1ygya2 1 SLPVVLIADKLAPSTVAALGDQVEVRWVDGPDRDKLLAAVPEADALLVRSATTVDAEVLAAA-PKLKIVARAGVGLDNVD 79 (130)
T ss_dssp CCCEEEECSSCCGGGGTTSCSSSEEEECCTTSHHHHHHHGGGCSEEEECSSSCBCHHHHHTC-TTCCEEEESSSCCTTBC
T ss_pred CCCEEEEECCCCHHHHHHHhCCcEEEECCCCCHHHHHHHcCCCEEEEEcCcccchHHHHhhc-ccceEEeeecccccchh
Confidence 58999999999999999999989999988889999999999999999998889999999997 69999999999999999
Q ss_pred hhHHHhCCceeecCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCccc
Q 007512 137 LAAATEFGCLVVNAPTANTVAAAEHGIALLAAMARNVAQADASVKAGKWQ 186 (600)
Q Consensus 137 ~~aa~~~GI~V~n~p~~~~~~vAE~~l~lll~~~R~i~~~~~~~~~g~W~ 186 (600)
+++|+++||.|+|+||+++.+||||+++|||+++|++..+++.+|+|+|.
T Consensus 80 l~~~~~~gI~V~n~p~~~~~~VAE~~~~l~L~l~R~i~~a~~~vr~g~~~ 129 (130)
T d1ygya2 80 VDAATARGVLVVNAPTSASTAEAQDRAGTDVAESVRLALAGEFVPDAVNV 129 (130)
T ss_dssp HHHHHHTTCEEECCTTSSCBHHHHHHHHHHHHHHHHHHHTTCCCTTBCSC
T ss_pred HHHHHHCCceEEecCCCCcHHHHHHHHHHHHHHHhhHHHHhhhcccCccC
Confidence 99999999999999999999999999999999999999988777777773
|
| >d1ygya4 d.81.2.2 (A:317-451) D-3-phosphoglycerate dehydrogenase SerA {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: FwdE/GAPDH domain-like superfamily: Serine metabolism enzymes domain family: SerA intervening domain-like domain: D-3-phosphoglycerate dehydrogenase SerA species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.93 E-value=3.2e-26 Score=208.13 Aligned_cols=131 Identities=21% Similarity=0.271 Sum_probs=118.5
Q ss_pred hhhhcccchHHHHHHHHHHHHHHhcCCCCceEEEEEEeecCCCCccccccccHHHHHhhchhhhccchhhccHHHHHhhc
Q 007512 377 EVLTELKPFVELAEKLGRLAVQLVAGGSGVKTVKVSYASSRAPDDLDTRLLRAMITKGLIEPISDVFVNLVNADYTAKQR 456 (600)
Q Consensus 377 ~~~~~~~p~~~la~~lG~l~~qL~~g~~~~k~v~i~~~Gs~a~~~~~~~~~~~a~l~GlL~~~~~~~vn~vnA~~~A~e~ 456 (600)
++.++++||+.||++||+++.||+.+ .+++++++|+|+++ .+++.+++.++++|+|.++.++++|++||+.+|+++
T Consensus 3 ~~~~~l~Pyl~LaekLG~~~~ql~~~--~~~~i~I~~~G~~a--~~~~~~lt~a~l~G~L~~~~~~~VN~VNA~~iAker 78 (135)
T d1ygya4 3 VVNEEVAPWLDLVRKLGVLAGVLSDE--LPVSLSVQVRGELA--AEEVEVLRLSALRGLFSAVIEDAVTFVNAPALAAER 78 (135)
T ss_dssp TSCTTTTTHHHHHHHHHHHHHHTSSS--CCSEEEEEEEEGGG--GSCCHHHHHHHHHHHTGGGSCTTCCCCCHHHHHHHH
T ss_pred ccccchhhHHHHHHHHHHHHHHHcCC--CCcEEEEEEEeecc--cccccHHHHHHHHHHHhcccccccchhhHHHHHHHc
Confidence 35678999999999999999999999 89999999999997 778899999999999999999999999999999999
Q ss_pred CceEEEEEeecCCCCCCCCceEEEEEeecccccccccCCCcEEEEEEEEeC-C-ceEEEEEcceEEEee
Q 007512 457 GLRLTEERILLDGSPESPLEFIQVQIANVESKFASAISESGEIKVEGRVKD-G-VPHLTKVGSFEVDVS 523 (600)
Q Consensus 457 GI~v~~~~~~~~~~~~~~~n~i~v~~~~~~~~~~~~~~~~~~~~v~Gsv~g-G-~~~I~~Idgf~v~~~ 523 (600)
||++++.+.+... .|+|++++++.. +++++++|.||++| + .+||++||||++|++
T Consensus 79 GI~v~~~~~~~~~---~~~n~i~v~~~~---------~~~~~~~v~Gtv~g~~~~~RIv~Idg~~vdvk 135 (135)
T d1ygya4 79 GVTAEICKASESP---NHRSVVDVRAVG---------ADGSVVTVSGTLYGPQLSQKIVQINGRHFDLR 135 (135)
T ss_dssp SCEEEEEEESCCS---SSSEEEEEEEEC---------TTSCEEEEEEEEETTTTEEEEEEETTEEEEEE
T ss_pred CCEEEEEECCCCC---CCcccEEEEEEe---------CCCcEEEEEEEEECCCCcEEEEEECCEEEeeC
Confidence 9999998876554 899999998763 56788999999997 4 589999999999985
|
| >d1sc6a2 c.23.12.1 (A:7-107,A:296-326) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Formate/glycerate dehydrogenase catalytic domain-like family: Formate/glycerate dehydrogenases, substrate-binding domain domain: Phosphoglycerate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=99.89 E-value=2.3e-23 Score=188.43 Aligned_cols=123 Identities=28% Similarity=0.332 Sum_probs=105.8
Q ss_pred CCCCeEEEecCCCHhHHHHhcccC--cEEEc-cCCCHhHHhhhcCCceEEEEcCCCCCCHHHHhccCCCceEEEEcCccc
Q 007512 56 SSKPTVLIAEKLGQAGLDLLNEFA--NVDCA-YNLSPEELCTKISLCDALIVRSGTKVNRDVFESSAGRLKVVGRAGVGI 132 (600)
Q Consensus 56 ~~~~~ilv~~~l~~~~~~~l~~~~--~v~~~-~~~~~~el~~~i~~~d~li~~~~~~~~~~~l~~~~~~Lk~I~~~g~G~ 132 (600)
.+|||||+++++++.+++.|++.+ .+.+. ..++++++.+.+.++|++++++.+++++++|+++ |+||+|+++|+|+
T Consensus 2 k~kmKILv~d~i~~~a~~~L~~~g~~~v~~~~~~~~~~~l~~~~~~~d~ii~~~~~~i~~~~i~~~-p~Lk~I~~~gvG~ 80 (132)
T d1sc6a2 2 KDKIKFLLVEGVHQKALESLRAAGYTNIEFHKGALDDEQLKESIRDAHFIGLRSRTHLTEDVINAA-EKLVAIGAFAIGT 80 (132)
T ss_dssp CSSCCEEECSCCCHHHHHHHHHTTCCCEEECSSCCCHHHHHHHTTSCSEEEECSSCCBCHHHHHHC-SSCCEEEECSSCC
T ss_pred CCCCEEEEECCCCHHHHHHHHhCCCEEEEeCCCCCCHHHHHHhhcCCcEEEEecccccChhhhhcc-ccceeEEEecccc
Confidence 468999999999999999999865 34433 3568999999999999999998889999999998 6999999999999
Q ss_pred CccChhHHHhCCceeecCCCCChHHHHHHHHHHHHHHHhchHHHHHHHH
Q 007512 133 DNVDLAAATEFGCLVVNAPTANTVAAAEHGIALLAAMARNVAQADASVK 181 (600)
Q Consensus 133 d~iD~~aa~~~GI~V~n~p~~~~~~vAE~~l~lll~~~R~i~~~~~~~~ 181 (600)
||||+++|+++||.|+|+|++++.+||||++.||+ .|++..++...+
T Consensus 81 D~IDl~aa~~~gI~V~ntp~~~~~svAe~~~lml~--~~~~~~~d~~~~ 127 (132)
T d1sc6a2 81 NQVDLDAAAKRGIPVFNAPFSSTQEAQENIGLEVA--GKLIKYSDNGST 127 (132)
T ss_dssp TTBCHHHHHHTTCCEECCTTTCSHHHHHHHHHHHH--HHHHHHHHHCCC
T ss_pred cccCHHHHHhCCCEEEECCCCchhHHHHHHHHHHH--HHhhHHHhCcCc
Confidence 99999999999999999999999999998665553 566666555443
|
| >d1gdha2 c.23.12.1 (A:2-100,A:292-321) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Formate/glycerate dehydrogenase catalytic domain-like family: Formate/glycerate dehydrogenases, substrate-binding domain domain: D-glycerate dehydrogenase species: Hyphomicrobium methylovorum [TaxId: 84]
Probab=99.88 E-value=1.2e-22 Score=183.03 Aligned_cols=114 Identities=23% Similarity=0.292 Sum_probs=102.5
Q ss_pred CCeEEEecCCCHhHHHHhcccCcEEEcc---CCCHhHHhhhcCCceEEEEcCCCCCCHHHHhccCCCceEEEEcCcccCc
Q 007512 58 KPTVLIAEKLGQAGLDLLNEFANVDCAY---NLSPEELCTKISLCDALIVRSGTKVNRDVFESSAGRLKVVGRAGVGIDN 134 (600)
Q Consensus 58 ~~~ilv~~~l~~~~~~~l~~~~~v~~~~---~~~~~el~~~i~~~d~li~~~~~~~~~~~l~~~~~~Lk~I~~~g~G~d~ 134 (600)
|||||++.+++++.++.|++.+++.+.+ .++.+|+.+.++++|++++++.+++++++|++++++||+|+++|+|+||
T Consensus 1 K~kVlit~~~~~~~~~~l~~~~~v~~~~~~~~~s~~el~~~~~~~d~ii~~~~~~i~~~~l~~~~~~LK~I~~~gvG~d~ 80 (129)
T d1gdha2 1 KKKILITWPLPEAAMARARESYDVIAHGDDPKITIDEMIETAKSVDALLITLNEKCRKEVIDRIPENIKCISTYSIGFDH 80 (129)
T ss_dssp CCEEEESSCCCHHHHHHHHTTSEEEECCSTTCCCHHHHHHHHTTCSEEEEETTSCBCHHHHHHSCTTCCEEEEESSCCTT
T ss_pred CCEEEEeCCCCHHHHHHHHcCCcEEEeCCCCCCCHHHHHHHhcCCCEEEEcCCchhhhHHHhhhhhcceeeeecccCCcc
Confidence 7999999999999999999988888653 3578999999999999999988899999999985589999999999999
Q ss_pred cChhHHHhCCceeecCCCCChHHHHHHHHHHHHHHHh
Q 007512 135 VDLAAATEFGCLVVNAPTANTVAAAEHGIALLAAMAR 171 (600)
Q Consensus 135 iD~~aa~~~GI~V~n~p~~~~~~vAE~~l~lll~~~R 171 (600)
||+++|+++||.|+|+||+++.+|||+++++|+.+.+
T Consensus 81 ID~~~a~~~gI~V~ntpg~~~~aVAE~A~~~~~l~~~ 117 (129)
T d1gdha2 81 IDLDACKARGIKVGNAPHGATQAREDMAHQANDLIDA 117 (129)
T ss_dssp BCHHHHHHTTCEEECCCCSBHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHhCCCEEEECCCCCchHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999976655554444
|
| >d1qp8a2 c.23.12.1 (A:1-82,A:264-302) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Formate/glycerate dehydrogenase catalytic domain-like family: Formate/glycerate dehydrogenases, substrate-binding domain domain: Putative formate dehydrogenase species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=99.83 E-value=9e-23 Score=181.75 Aligned_cols=121 Identities=15% Similarity=0.205 Sum_probs=107.2
Q ss_pred CeEEEecCCCHhHHHHhcccCcEEEccCCCHhHHhhhcCCceEEEEcCCCCCCHHHHhccCCCceEEEEcCcccCccChh
Q 007512 59 PTVLIAEKLGQAGLDLLNEFANVDCAYNLSPEELCTKISLCDALIVRSGTKVNRDVFESSAGRLKVVGRAGVGIDNVDLA 138 (600)
Q Consensus 59 ~~ilv~~~l~~~~~~~l~~~~~v~~~~~~~~~el~~~i~~~d~li~~~~~~~~~~~l~~~~~~Lk~I~~~g~G~d~iD~~ 138 (600)
|||+++.+++++..+.|++.+++.... .+.++|++++ ++++++.++++ |+||||++.|+|+||+|++
T Consensus 1 Mki~v~~~lp~e~~e~L~~~~~v~~~~---------d~~~~d~~l~---~~~~~~~l~~~-~~Lk~i~~~~aG~D~i~~~ 67 (121)
T d1qp8a2 1 MELYVNFELPPEAEEELRKYFKIVRGG---------DLGNVEAALV---SRITAEELAKM-PRLKFIQVVTAGLDHLPWE 67 (121)
T ss_dssp CEEECCSCCCHHHHHHHHTTCEEECSS---------CCTTBCCCCB---SCCCHHHHHHC-TTCCCEEBSSSCCTTSCCT
T ss_pred CEEEEeCCCCHHHHHHhhhcceEeecc---------cccccceeee---eccCHHHHhcC-CCceEEEecccCcCCCCHH
Confidence 689999999999999999877665332 3577888776 46899999998 6999999999999999999
Q ss_pred HHHhCCceeecCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCccccccccceeccCCEEEEEecChhHHHHHHHhhc
Q 007512 139 AATEFGCLVVNAPTANTVAAAEHGIALLAAMARNVAQADASVKAGKWQRNKYVGVSLVGKTLAVLGFGKVGSEVARRAKG 218 (600)
Q Consensus 139 aa~~~GI~V~n~p~~~~~~vAE~~l~lll~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktiGIIGlG~IG~~vA~~l~~ 218 (600)
.+. +||.|+|+||+|+.++|||+++++|++.|+ ++|+|+|.||+.+|+|+++
T Consensus 68 ~~~-~~i~v~n~~g~~~~~vae~~~~~il~~~r~---------------------------l~i~G~G~iG~~iA~r~~a 119 (121)
T d1qp8a2 68 SIP-PHVTVAGNAGSNGYGNERVWRQMVMEAVRN---------------------------LITYATGGRPRNIAKREDY 119 (121)
T ss_dssp TSC-TTSCEECCCSSSSSSCHHHHHHHHHHHHHH---------------------------HHHHHTTSCCSCBCCGGGT
T ss_pred Hhc-cCeEEEECCCCChHHHHHHHHHHHHHhcCC---------------------------EEEEcCCHHHHHHHHHHHh
Confidence 985 699999999999999999999999999983 5899999999999999999
Q ss_pred CC
Q 007512 219 LG 220 (600)
Q Consensus 219 ~g 220 (600)
||
T Consensus 120 ~G 121 (121)
T d1qp8a2 120 IG 121 (121)
T ss_dssp C-
T ss_pred cC
Confidence 97
|
| >d1dxya2 c.23.12.1 (A:1-100,A:300-330) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Formate/glycerate dehydrogenase catalytic domain-like family: Formate/glycerate dehydrogenases, substrate-binding domain domain: D-2-hydroxyisocaproate dehydrogenase species: Lactobacillus casei [TaxId: 1582]
Probab=99.82 E-value=4.8e-21 Score=172.79 Aligned_cols=122 Identities=16% Similarity=0.150 Sum_probs=101.4
Q ss_pred CeEEEecCC--CHhHHHHhcc-c-CcEEEccCCCHhHHhhhcCCceEEEEcCCCCCCHHHHhccC-CCceEEEEcCcccC
Q 007512 59 PTVLIAEKL--GQAGLDLLNE-F-ANVDCAYNLSPEELCTKISLCDALIVRSGTKVNRDVFESSA-GRLKVVGRAGVGID 133 (600)
Q Consensus 59 ~~ilv~~~l--~~~~~~~l~~-~-~~v~~~~~~~~~el~~~i~~~d~li~~~~~~~~~~~l~~~~-~~Lk~I~~~g~G~d 133 (600)
|||++.+.. ..+.++.+.+ + .++.+......+++.+.++++|++++++.+++++++|++++ ++||+|++.|+|+|
T Consensus 1 MKIl~~~~~~~e~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~ii~~~~~~~~~~vl~~l~~~~Lk~I~~~~vG~d 80 (131)
T d1dxya2 1 MKIIAYGARVDEIQYFKQWAKDTGNTLEYHTEFLDENTVEWAKGFDGINSLQTTPYAAGVFEKMHAYGIKFLTIRNVGTD 80 (131)
T ss_dssp CEEEECSCCTTTHHHHHHHHHHHCCEEEECSSCCCTTGGGGGTTCSEEEECCSSCBCHHHHHHHHHTTCCEEEESSSCCT
T ss_pred CEEEEEecCcCcHHHHHHHHHHcCeEEEEcCCCCCHHHHHHhcCCCEEEEecCCCCCHHHHhhcccCCeEEEEEcccccc
Confidence 689987543 3444555543 3 36766655556788889999999999888899999999752 47999999999999
Q ss_pred ccChhHHHhCCceeecCCCCChHHHHHHHHHHHHHHHhchHHHHHHH
Q 007512 134 NVDLAAATEFGCLVVNAPTANTVAAAEHGIALLAAMARNVAQADASV 180 (600)
Q Consensus 134 ~iD~~aa~~~GI~V~n~p~~~~~~vAE~~l~lll~~~R~i~~~~~~~ 180 (600)
|||+++|+++||.|+|+|++++.+||||++++||+++|++.++++++
T Consensus 81 ~ID~~~a~~~gI~V~n~P~~~~~aVAE~~~~~~l~l~R~l~~~~~~~ 127 (131)
T d1dxya2 81 NIDMTAMKQYGIRLSNVPAYTETAVHNMVYFSLQHLVDFLTKGETST 127 (131)
T ss_dssp TBCHHHHHHTTCEEECCTTSSHHHHHHHHHHHHHHHHHHHHHSCCTT
T ss_pred cccccccccceEEEEeCCCCCchhHHHHHHHHHHHHHcchHHHHhhc
Confidence 99999999999999999999999999999999999999998865443
|
| >d1mx3a2 c.23.12.1 (A:27-125,A:319-352) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Formate/glycerate dehydrogenase catalytic domain-like family: Formate/glycerate dehydrogenases, substrate-binding domain domain: Transcription corepressor CtbP species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]
Probab=99.82 E-value=1.2e-20 Score=170.36 Aligned_cols=124 Identities=23% Similarity=0.374 Sum_probs=106.7
Q ss_pred CCeEEEecCCC-HhHHHHhcccCcEEEccCCCHhHHhhh-cCCceEEEEcCCCCCCHHHHhccCCCceEEEEcCcccCcc
Q 007512 58 KPTVLIAEKLG-QAGLDLLNEFANVDCAYNLSPEELCTK-ISLCDALIVRSGTKVNRDVFESSAGRLKVVGRAGVGIDNV 135 (600)
Q Consensus 58 ~~~ilv~~~l~-~~~~~~l~~~~~v~~~~~~~~~el~~~-i~~~d~li~~~~~~~~~~~l~~~~~~Lk~I~~~g~G~d~i 135 (600)
+|+|++.|..+ ...+..|++.+++.+....+.+|+.+. +.++|++++++.+++++++|+++ |+||+|+++|+|+|||
T Consensus 1 mP~v~~ld~~d~~~e~~~L~~~~~v~~~~~~s~~e~~e~~~~~a~~vlv~~~~~i~~~~l~~~-~~Lk~I~~~g~G~d~i 79 (133)
T d1mx3a2 1 MPLVALLDGRDCTVEMPILKDVATVAFCDAQSTQEIHEKVLNEAVGALMYHTITLTREDLEKF-KALRIIVRIGSGFDNI 79 (133)
T ss_dssp CCEEEESSCSCCTTTHHHHTTTCEEEECCCSSGGGSCHHHHHHEEEEEECSSSCBCHHHHTTC-SSCCEEEESSSCCTTB
T ss_pred CCEEEEecCCcchhhHHHhcccceEEEecCCChHHHHHHHhccCcEEEEEeCCCcCHHHHhhC-CCCeEEEEcCCCcccE
Confidence 58899988654 234677888888888766677776654 46789999998899999999998 6999999999999999
Q ss_pred ChhHHHhCCceeecCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCcccc
Q 007512 136 DLAAATEFGCLVVNAPTANTVAAAEHGIALLAAMARNVAQADASVKAGKWQR 187 (600)
Q Consensus 136 D~~aa~~~GI~V~n~p~~~~~~vAE~~l~lll~~~R~i~~~~~~~~~g~W~~ 187 (600)
|+++|+++||.|+|+||+++. +|||+++|+|+++|+++++.+ |+|.+
T Consensus 80 D~~~~~~~gI~v~n~p~~~~~-vAE~a~~lil~~~R~i~~a~~----g~~~~ 126 (133)
T d1mx3a2 80 DIKSAGDLGIAVCNVPAASVY-SEQASIEMREEAAREIRRAIT----GRIPD 126 (133)
T ss_dssp CHHHHHHTTCEEECCCSTTHC-CHHHHHHHHHHHHHHHHHHHH----SCTTT
T ss_pred eeeeheeCCEEEEcCCCCCch-hHHHHHHHHHHHHhhHHHHHh----ccccc
Confidence 999999999999999999985 799999999999999999865 66654
|
| >d2naca2 c.23.12.1 (A:1-147,A:336-374) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Formate/glycerate dehydrogenase catalytic domain-like family: Formate/glycerate dehydrogenases, substrate-binding domain domain: Formate dehydrogenase species: Pseudomonas sp., strain 101 [TaxId: 306]
Probab=99.76 E-value=1.8e-19 Score=168.91 Aligned_cols=114 Identities=17% Similarity=0.166 Sum_probs=99.3
Q ss_pred HHHHhcccC-cEEEccC--CCHhHHhhhcCCceEEEEcC--CCCCCHHHHhccCCCceEEEEcCcccCccChhHHHhCCc
Q 007512 71 GLDLLNEFA-NVDCAYN--LSPEELCTKISLCDALIVRS--GTKVNRDVFESSAGRLKVVGRAGVGIDNVDLAAATEFGC 145 (600)
Q Consensus 71 ~~~~l~~~~-~v~~~~~--~~~~el~~~i~~~d~li~~~--~~~~~~~~l~~~~~~Lk~I~~~g~G~d~iD~~aa~~~GI 145 (600)
..++|++.+ ++....+ .+.+++.+.+.|+|++|++. .+++|+++|+++ ||||+|+++|+|+||||+++|+++||
T Consensus 59 lr~~Le~~GhelV~~sd~~~~~~el~k~l~DADivI~~pf~~~~lt~e~i~~a-p~LKlI~~~g~G~D~VDl~aa~e~gI 137 (186)
T d2naca2 59 LRKYLESNGHTLVVTSDKDGPDSVFERELVDADVVISQPFWPAYLTPERIAKA-KNLKLALTAGIGSDHVDLQSAIDRNV 137 (186)
T ss_dssp CHHHHHHTTCEEEEESCCSSTTSHHHHHHTTCSEEEEBTTBCCCBCHHHHHHC-TTCCEEEESSSCCTTBCHHHHHHTTC
T ss_pred HHHHHHHCCCEEEEecCCCCChHHHHhhcccCCEEEEecccccccCHHHHhcC-ccceEEEEeccCCccccHHHHHhCCC
Confidence 356788775 5554433 34567889999999999984 578999999998 69999999999999999999999999
Q ss_pred eeecCCCCChHHHHHHH--------HHHHHHHHhchHHHHHHHHcCcc
Q 007512 146 LVVNAPTANTVAAAEHG--------IALLAAMARNVAQADASVKAGKW 185 (600)
Q Consensus 146 ~V~n~p~~~~~~vAE~~--------l~lll~~~R~i~~~~~~~~~g~W 185 (600)
.|+|+||+|+.+||||+ +.++++..|++...+..+++|+|
T Consensus 138 ~V~n~pg~n~~SVAEha~~~~~~~~i~~il~~~r~~~~~~~~v~~G~~ 185 (186)
T d2naca2 138 TVAEVTYCNSTTLTAQARYAAGTREILECFFEGRPIRDEYLIVQGGAL 185 (186)
T ss_dssp EEEECTTTTHCSHHHHHHHHHHHHHHHHHHHHTCCCCGGGEEEETTEE
T ss_pred EEEECCCcCcHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhcccc
Confidence 99999999999999999 77888889999998888999988
|
| >d1j4aa2 c.23.12.1 (A:2-103,A:301-332) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Formate/glycerate dehydrogenase catalytic domain-like family: Formate/glycerate dehydrogenases, substrate-binding domain domain: D-lactate dehydrogenase species: Lactobacillus helveticus [TaxId: 1587]
Probab=99.71 E-value=6.7e-18 Score=152.57 Aligned_cols=121 Identities=17% Similarity=0.217 Sum_probs=93.1
Q ss_pred eEEEecCCC--HhHHHH-hcccCcE--EEccCCCHhHHhhhcCCceEEEEcCCCCCCHHHHhcc-CCCceEEEEcCcccC
Q 007512 60 TVLIAEKLG--QAGLDL-LNEFANV--DCAYNLSPEELCTKISLCDALIVRSGTKVNRDVFESS-AGRLKVVGRAGVGID 133 (600)
Q Consensus 60 ~ilv~~~l~--~~~~~~-l~~~~~v--~~~~~~~~~el~~~i~~~d~li~~~~~~~~~~~l~~~-~~~Lk~I~~~g~G~d 133 (600)
||++..... .+.++. ++...++ ........+++.+.++++|++++++.+++++++++++ .++||+|++.|+|+|
T Consensus 2 KI~~f~~~~~e~~~~e~~~~~~~~v~v~~~~~~~~~e~~~~~~~~d~viv~~~~~i~~eil~~l~~~~LK~I~~~~vG~d 81 (134)
T d1j4aa2 2 KIFAYAIREDEKPFLKEWEDAHKDVEVEYTDKLLTPETVALAKGADGVVVYQQLDYIAETLQALADNGITKMSLRNVGVD 81 (134)
T ss_dssp EEEECSCCGGGHHHHHHHHHTCTTSEEEECSSCCCTTTGGGGTTCSEEEECCSSCBCHHHHHHHHHTTCCEEEESSSCCT
T ss_pred eEEEEecccccHHHHHHHHHhCCCEEEEECCCCCCHHHHHHhcCCCEEEEecCCCcCHHHHhhhcccCeeEEEEccCCcC
Confidence 788764433 333433 4444444 4344334467888999999999988889999999964 247999999999999
Q ss_pred ccChhHHHhCCceeecCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCccc
Q 007512 134 NVDLAAATEFGCLVVNAPTANTVAAAEHGIALLAAMARNVAQADASVKAGKWQ 186 (600)
Q Consensus 134 ~iD~~aa~~~GI~V~n~p~~~~~~vAE~~l~lll~~~R~i~~~~~~~~~g~W~ 186 (600)
|||+++|+++||.|+|+|++ ++|||++++||+++|++.. .+.+|+|.
T Consensus 82 ~ID~~aa~~~gI~V~N~P~~---svae~a~~~ml~l~r~~~~---~~~~~k~~ 128 (134)
T d1j4aa2 82 NIDMAKAKELGFQITNVPVY---SYTTHAVRNMVVKAFDNNL---ELVEGKEA 128 (134)
T ss_dssp TBCHHHHHHTTCEEECCCCS---CCBHHHHHHHHHHHHHHHH---HHHTTCCC
T ss_pred ccCHHHHHhCCeEEEECCCC---cHHHHHHHHHHHHHHHHhH---HHhhhhcc
Confidence 99999999999999999987 4799999999999998744 44445543
|
| >d1ygya3 d.58.18.1 (A:452-529) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: ACT-like family: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain domain: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.66 E-value=5.4e-17 Score=132.81 Aligned_cols=76 Identities=21% Similarity=0.403 Sum_probs=74.3
Q ss_pred CccEEEEEecCCCCChhhHHhhhhcCCccccceEeeeecCCCcEEEEEEeCCCCcHHHHHHHhcCCCcceEEEeeC
Q 007512 525 EGSIILCRQVDQPGMIGTVGSILGSENVNVSFMSVGRVAPRKHAVMAIGVDEQPRKETLKKIGDVPAIEEFVFLKL 600 (600)
Q Consensus 525 ~~~~Liv~~~D~pG~Ia~V~~iL~~~~INIa~m~v~R~~~g~~al~~i~~D~~~~~~~l~~l~~~~~v~~v~~i~l 600 (600)
+++.|++.|.|+||+|+.|+++|+++||||++|+++|..+|+.|+|++++|++++++++++|+++|+|.+++.++|
T Consensus 2 eG~~L~i~~~D~PGvi~~I~~~l~~~~iNI~~m~~~~~~~g~~a~~vi~vD~~~~~~vl~~I~~~~~V~~v~~i~l 77 (78)
T d1ygya3 2 QGINLIIHYVDRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPGATILLRLDQDVPDDVRTAIAAAVDAYKLEVVDL 77 (78)
T ss_dssp CSEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEECSSSSCEEEEEEESSCCCHHHHHHHHHHHTEEEEEEEEC
T ss_pred CceEEEEEeCCcCCHHHHHHHHHHhcCcChhhheeeecCCCCeEEEEEEcCCCccHHHHHHHHcCCCeEEEEEEec
Confidence 6899999999999999999999999999999999999999999999999999999999999999999999999986
|
| >d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.62 E-value=4.3e-16 Score=144.00 Aligned_cols=120 Identities=23% Similarity=0.310 Sum_probs=99.3
Q ss_pred cceeccCCEEEEEecChhHHHHHHHhhcCCCEEEEECCCC-ChhHHHHcCCcccCHHHHhccCCEEEEecCCCccccccc
Q 007512 191 VGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYA-PADRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVL 269 (600)
Q Consensus 191 ~g~~l~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~-~~~~a~~~g~~~~~l~ell~~aDvV~l~~Pl~~~t~~li 269 (600)
++..|.||+++|+|||.||+.+|+++++|||+|++||+++ ..-+|...|++..+++++++.+|++++++. ++++|
T Consensus 18 t~~~l~Gk~v~V~GyG~iG~g~A~~~rg~G~~V~v~e~dp~~al~A~~dG~~v~~~~~a~~~adivvtaTG----n~~vI 93 (163)
T d1li4a1 18 TDVMIAGKVAVVAGYGDVGKGCAQALRGFGARVIITEIDPINALQAAMEGYEVTTMDEACQEGNIFVTTTG----CIDII 93 (163)
T ss_dssp HCCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECCHHHHTTTCSEEEECSS----CSCSB
T ss_pred hCceecCCEEEEeccccccHHHHHHHHhCCCeeEeeecccchhHHhhcCceEeeehhhhhhhccEEEecCC----Cccch
Confidence 5678999999999999999999999999999999999987 445667779999999999999999988764 68899
Q ss_pred cHhHhccCCCceEEEEcc-CCccccHHHHHHhHhcCCceEEEEecc
Q 007512 270 NDETFGKMKKGVRIINVA-RGGVIDEEALVRALDSGRVAQAALDVF 314 (600)
Q Consensus 270 ~~~~l~~mk~gailvNva-rg~ivde~aL~~aL~~g~i~ga~lDv~ 314 (600)
+.+.|++||+|++|.|++ +..-+|.++|.+...+.+.....+|.|
T Consensus 94 ~~eh~~~MKdgaIL~N~Ghfd~EId~~~L~~~~~~~~~v~~~v~~y 139 (163)
T d1li4a1 94 LGRHFEQMKDDAIVCNIGHFDVEIDVKWLNENAVEKVNIKPQVDRY 139 (163)
T ss_dssp CHHHHTTCCTTEEEEECSSSTTSBCHHHHHHHCSEEEEEETTEEEE
T ss_pred hHHHHHhccCCeEEEEeccccceecHHHHhhccceeeeecCCeeEE
Confidence 999999999999999998 456678888866433332323334443
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=99.49 E-value=8.5e-14 Score=128.78 Aligned_cols=140 Identities=17% Similarity=0.153 Sum_probs=101.7
Q ss_pred CEEEEEecChhHHHHHHHhhcCCCEEEEECCCC-ChhHHHHcCCc--ccCHHHHhccCCEEEEecCCCccccccccHhHh
Q 007512 198 KTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYA-PADRARAIGVD--LVSFDEAIATADFISLHMPLTPATSKVLNDETF 274 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~-~~~~a~~~g~~--~~~l~ell~~aDvV~l~~Pl~~~t~~li~~~~l 274 (600)
++|||||+|+||+++|+.|+..|.+|.+||++. ..+.+.+.|.. ..+..+.+++||+|++|+|. ..+..+++ +..
T Consensus 1 MkI~iIG~G~mG~~lA~~l~~~g~~V~~~d~~~~~~~~a~~~~~~~~~~~~~~~~~~~DiIilavp~-~~~~~vl~-~l~ 78 (165)
T d2f1ka2 1 MKIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVERQLVDEAGQDLSLLQTAKIIFLCTPI-QLILPTLE-KLI 78 (165)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTSCSEEESCGGGGTTCSEEEECSCH-HHHHHHHH-HHG
T ss_pred CEEEEEeecHHHHHHHHHHHHCCCEEEEEECCchHHHHHHHhhccceeeeecccccccccccccCcH-hhhhhhhh-hhh
Confidence 479999999999999999999999999999986 45667777752 33555788999999999994 45667764 456
Q ss_pred ccCCCceEEEEccCCccccHHHHHHhHhcCCceEEEEeccCC-CCCCCCCccccCCcEEEcCCCCCC
Q 007512 275 GKMKKGVRIINVARGGVIDEEALVRALDSGRVAQAALDVFTE-EPPPADSKLVQHERVTVTPHLGAS 340 (600)
Q Consensus 275 ~~mk~gailvNvarg~ivde~aL~~aL~~g~i~ga~lDv~~~-EP~~~~~~L~~~~nvilTPH~~~~ 340 (600)
..++++++++|++.......... ..+....+..--+...+. .|..+...||.+..+++||+-++.
T Consensus 79 ~~l~~~~iv~~~~s~~~~~~~~~-~~~~~~~~~~h~~~~~~~~g~~~a~~~l~~~~~~il~~~~~~~ 144 (165)
T d2f1ka2 79 PHLSPTAIVTDVASVKTAIAEPA-SQLWSGFIGGHPMAGTAAQGIDGAEENLFVNAPYVLTPTEYTD 144 (165)
T ss_dssp GGSCTTCEEEECCSCCHHHHHHH-HHHSTTCEEEEECCCCSCSSGGGCCTTTTTTCEEEEEECTTCC
T ss_pred hhcccccceeeccccchHHHHHH-HHhhcccccceeeecccccchhhhcccccCCCeEEEEeCCCCC
Confidence 77999999999987665434433 334445553333222211 122345678999999999987655
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=99.49 E-value=3.7e-14 Score=131.75 Aligned_cols=138 Identities=15% Similarity=0.174 Sum_probs=103.0
Q ss_pred CEEEEEecChhHHHHHHHhhcCC--CEEEEECCCC-ChhHHHHcCCc---ccCHHH-HhccCCEEEEecCCCcccccccc
Q 007512 198 KTLAVLGFGKVGSEVARRAKGLG--MHVIAHDPYA-PADRARAIGVD---LVSFDE-AIATADFISLHMPLTPATSKVLN 270 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~g--~~V~~~d~~~-~~~~a~~~g~~---~~~l~e-ll~~aDvV~l~~Pl~~~t~~li~ 270 (600)
|+|+|||+|+||+++|+.|+..| .+|++||++. ..+.+++.+.. ..+.++ ....+|+|++|+|. ..+..+++
T Consensus 2 k~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~dlIila~p~-~~~~~vl~ 80 (171)
T d2g5ca2 2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLSSPV-RTFREIAK 80 (171)
T ss_dssp CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCGGGGGGTCCSEEEECSCH-HHHHHHHH
T ss_pred CEEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHhhcchhhhhhhhhhhccccccccccCCc-hhhhhhhh
Confidence 57999999999999999999766 5899999987 45677777762 223443 34579999999993 34555553
Q ss_pred HhHhccCCCceEEEEccCCccccHHHHHHhHhcCCceEEEE---eccCCCCCCCCCccccCCcEEEcCCCCC
Q 007512 271 DETFGKMKKGVRIINVARGGVIDEEALVRALDSGRVAQAAL---DVFTEEPPPADSKLVQHERVTVTPHLGA 339 (600)
Q Consensus 271 ~~~l~~mk~gailvNvarg~ivde~aL~~aL~~g~i~ga~l---Dv~~~EP~~~~~~L~~~~nvilTPH~~~ 339 (600)
+....++++++++|++.......+++.+.+....+++.-+ +..+.+ .++..||++.++++|||-..
T Consensus 81 -~l~~~~~~~~ii~d~~s~k~~~~~~~~~~~~~~~i~~hPm~G~e~sG~~--~a~~~Lf~g~~~il~p~~~~ 149 (171)
T d2g5ca2 81 -KLSYILSEDATVTDQGSVKGKLVYDLENILGKRFVGGHPIAGTEKSGVE--YSLDNLYEGKKVILTPTKKT 149 (171)
T ss_dssp -HHHHHSCTTCEEEECCSCCTHHHHHHHHHHGGGEECEEEECCCSCCSGG--GCCSSTTTTCEEEECCCSSS
T ss_pred -hhhccccccccccccccccHHHHHHHHHhhcccccccccccccccccHH--HHHHHhhCCCeEEEecCCCC
Confidence 3455689999999999866655666666677777766444 444444 56778999999999999754
|
| >d1sc6a3 d.58.18.1 (A:327-410) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: ACT-like family: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain domain: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain species: Escherichia coli [TaxId: 562]
Probab=99.41 E-value=6.8e-14 Score=115.71 Aligned_cols=73 Identities=19% Similarity=0.349 Sum_probs=69.8
Q ss_pred ccEEEEEecCCCCChhhHHhhhhcCCccccceEeeeecCCCcEEEEEEeCCCCcHHHHHHHhcCCCcceEEEe
Q 007512 526 GSIILCRQVDQPGMIGTVGSILGSENVNVSFMSVGRVAPRKHAVMAIGVDEQPRKETLKKIGDVPAIEEFVFL 598 (600)
Q Consensus 526 ~~~Liv~~~D~pG~Ia~V~~iL~~~~INIa~m~v~R~~~g~~al~~i~~D~~~~~~~l~~l~~~~~v~~v~~i 598 (600)
.+.|++.|+|+||+++.|+++|+++|+||++|.+.|..+++.++|.+++|++++++++++|+++|+|.+++++
T Consensus 11 ~~rl~i~~~d~PGvla~I~~~l~~~~iNI~~~~~~~~~~~~~a~~~i~~D~~~~~~v~~~i~~l~~Vi~vR~l 83 (84)
T d1sc6a3 11 GRRLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQTSAQMGYVVIDIEADEDVAEKALQAMKAIPGTIRARLL 83 (84)
T ss_dssp SEEEEEEEESCTTHHHHHHHHHHHTTCEEEEEEEEECSSEEEEEEEEECCHHHHHHHHHHHHTSTTEEEEEEC
T ss_pred CeEEEEEeCCcCCHHHHHHHHHHHcCCCHHHhccccCCCCcEEEEEEECCCCCHHHHHHHHHCCCCEEEEEEe
Confidence 4778889999999999999999999999999999999999999999999999999999999999999999986
|
| >d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]
Probab=99.36 E-value=9.2e-13 Score=120.85 Aligned_cols=104 Identities=27% Similarity=0.356 Sum_probs=90.5
Q ss_pred cceeccCCEEEEEecChhHHHHHHHhhcCCCEEEEECCCC-ChhHHHHcCCcccCHHHHhccCCEEEEecCCCccccccc
Q 007512 191 VGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYA-PADRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVL 269 (600)
Q Consensus 191 ~g~~l~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~-~~~~a~~~g~~~~~l~ell~~aDvV~l~~Pl~~~t~~li 269 (600)
+..-+.||++.|+|||.+|+.+|++++++|++|++++.++ ..-+|.-.|++..+++++++.+|+++.++. .+++|
T Consensus 17 t~~~laGk~vvV~GYG~vGrG~A~~~rg~Ga~V~V~E~DPi~alqA~mdGf~v~~~~~a~~~aDi~vTaTG----n~~vI 92 (163)
T d1v8ba1 17 TDFLISGKIVVICGYGDVGKGCASSMKGLGARVYITEIDPICAIQAVMEGFNVVTLDEIVDKGDFFITCTG----NVDVI 92 (163)
T ss_dssp HCCCCTTSEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHTTTCEECCHHHHTTTCSEEEECCS----SSSSB
T ss_pred hCceecCCEEEEecccccchhHHHHHHhCCCEEEEEecCchhhHHHHhcCCccCchhHccccCcEEEEcCC----CCccc
Confidence 3567899999999999999999999999999999998776 445677789999999999999999999887 45689
Q ss_pred cHhHhccCCCceEEEEccCCcc-ccHHHHH
Q 007512 270 NDETFGKMKKGVRIINVARGGV-IDEEALV 298 (600)
Q Consensus 270 ~~~~l~~mk~gailvNvarg~i-vde~aL~ 298 (600)
+.+.|..||+|++|-|++.-.. +|.++|.
T Consensus 93 ~~~h~~~MKdgaIl~N~GHfd~EIdv~~L~ 122 (163)
T d1v8ba1 93 KLEHLLKMKNNAVVGNIGHFDDEIQVNELF 122 (163)
T ss_dssp CHHHHTTCCTTCEEEECSSTTTSBCHHHHH
T ss_pred cHHHHHHhhCCeEEEeccccchhhhhHHHH
Confidence 9999999999999999998654 3555554
|
| >d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Probab=99.30 E-value=2.5e-12 Score=118.66 Aligned_cols=109 Identities=17% Similarity=0.274 Sum_probs=91.5
Q ss_pred CEEEEEecChhHHHHHHHhhcCCCEEEEECCCC-ChhHHHHcCCcc-cCHHHHhccCCEEEEecCCCcccccccc--HhH
Q 007512 198 KTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYA-PADRARAIGVDL-VSFDEAIATADFISLHMPLTPATSKVLN--DET 273 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~-~~~~a~~~g~~~-~~l~ell~~aDvV~l~~Pl~~~t~~li~--~~~ 273 (600)
++|||||+|.||+.+|++|...|++|++||+.. ..+.+.+.+... .+.++++++||+|++|+|..+..+.++. ...
T Consensus 1 MkIgiIGlG~MG~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~e~~~~~d~ii~~v~~~~~v~~v~~~~~~~ 80 (161)
T d1vpda2 1 MKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIAAGAETASTAKAIAEQCDVIITMLPNSPHVKEVALGENGI 80 (161)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTCH
T ss_pred CEEEEEehhHHHHHHHHHHHHCCCeEEEEeCCcchhHHHHHhhhhhcccHHHHHhCCCeEEEEcCCHHHHHHHHhCCcch
Confidence 479999999999999999999999999999887 334555666654 4799999999999999998877777652 346
Q ss_pred hccCCCceEEEEccCCccccHHHHHHhHhcCCc
Q 007512 274 FGKMKKGVRIINVARGGVIDEEALVRALDSGRV 306 (600)
Q Consensus 274 l~~mk~gailvNvarg~ivde~aL~~aL~~g~i 306 (600)
+..+++|.++||++....-....+.+.+++..+
T Consensus 81 ~~~~~~g~iiid~sT~~p~~~~~~~~~~~~~g~ 113 (161)
T d1vpda2 81 IEGAKPGTVLIDMSSIAPLASREISDALKAKGV 113 (161)
T ss_dssp HHHCCTTCEEEECSCCCHHHHHHHHHHHHTTTC
T ss_pred hhccCCCCEEEECCCCCHHHHHHHHHHHHHcCC
Confidence 778999999999999888777788888888766
|
| >d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.19 E-value=1.9e-11 Score=112.80 Aligned_cols=114 Identities=19% Similarity=0.264 Sum_probs=92.7
Q ss_pred CEEEEEecChhHHHHHHHhhcCCCEEEEECCCC-ChhHHHHcCCc-ccCHHHHhccCCEEEEecCCCcccccccc--HhH
Q 007512 198 KTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYA-PADRARAIGVD-LVSFDEAIATADFISLHMPLTPATSKVLN--DET 273 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~-~~~~a~~~g~~-~~~l~ell~~aDvV~l~~Pl~~~t~~li~--~~~ 273 (600)
++|||||+|.||+.+|++|...|++|.+||++. ..+.+...+.. ..++.+++..+|+|++|+|..+..+.++. ...
T Consensus 2 ~kIg~IGlG~MG~~iA~~L~~~g~~v~~~d~~~~~~~~~~~~~~~~~~~~~e~~~~~diii~~v~~~~~~~~v~~~~~~~ 81 (162)
T d3cuma2 2 KQIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQSAVDGLVAAGASAARSARDAVQGADVVISMLPASQHVEGLYLDDDGL 81 (162)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCEEEEECSSHHHHHHHHHTTCEECSSHHHHHTSCSEEEECCSCHHHHHHHHHSTTCH
T ss_pred CEEEEEEEHHHHHHHHHHHHHCCCeEEEEECchhhhhhhhhhhccccchhhhhccccCeeeecccchhhHHHHHhccccc
Confidence 589999999999999999999999999999886 33445566654 34799999999999999998776665542 335
Q ss_pred hccCCCceEEEEccCCccccHHHHHHhHhcCCceEEEEec
Q 007512 274 FGKMKKGVRIINVARGGVIDEEALVRALDSGRVAQAALDV 313 (600)
Q Consensus 274 l~~mk~gailvNvarg~ivde~aL~~aL~~g~i~ga~lDv 313 (600)
+..+++|.++||++....-+...+.+.+++..+ ..+|.
T Consensus 82 ~~~l~~g~iiid~st~~p~~~~~~~~~~~~~gi--~~~da 119 (162)
T d3cuma2 82 LAHIAPGTLVLECSTIAPTSARKIHAAARERGL--AMLDA 119 (162)
T ss_dssp HHHSCTTCEEEECSCCCHHHHHHHHHHHHHTTC--EEEEC
T ss_pred cccCCCCCEEEECCCCCHHHHHHHHHHHHHCCC--cEEec
Confidence 677999999999999988777888888877655 45554
|
| >d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Sheep (Ovis orientalis aries) [TaxId: 9940]
Probab=98.98 E-value=4.7e-10 Score=104.48 Aligned_cols=113 Identities=16% Similarity=0.167 Sum_probs=89.2
Q ss_pred CCEEEEEecChhHHHHHHHhhcCCCEEEEECCCCC-hhHHHHcCCc---------ccCHHHHhccCCEEEEecCCCcccc
Q 007512 197 GKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAP-ADRARAIGVD---------LVSFDEAIATADFISLHMPLTPATS 266 (600)
Q Consensus 197 gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~-~~~a~~~g~~---------~~~l~ell~~aDvV~l~~Pl~~~t~ 266 (600)
.++|||||+|.||..||++|...|++|.+||+... .+...+.+.. ..++.+.+..+|.+++++|..+.+.
T Consensus 2 ~~nIg~IGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ii~~~~~~~~v~ 81 (176)
T d2pgda2 2 QADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVLGAHSLEEMVSKLKKPRRIILLVKAGQAVD 81 (176)
T ss_dssp CBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHTTTTTSSCEECSSHHHHHHHBCSSCEEEECSCTTHHHH
T ss_pred CCcEEEEeEhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHhccccccccchhhhhhhhhhhcccceEEEecCchHHHH
Confidence 35799999999999999999999999999999873 2333333321 1246678889999999999887776
Q ss_pred ccccHhHhccCCCceEEEEccCCccccHHHHHHhHhcCCceEEEEe
Q 007512 267 KVLNDETFGKMKKGVRIINVARGGVIDEEALVRALDSGRVAQAALD 312 (600)
Q Consensus 267 ~li~~~~l~~mk~gailvNvarg~ivde~aL~~aL~~g~i~ga~lD 312 (600)
... ...+..+++|.++||++....-+...+.+.+.+..+ ..+|
T Consensus 82 ~v~-~~l~~~~~~g~iiid~sT~~~~~~~~~~~~~~~~g~--~~ld 124 (176)
T d2pgda2 82 NFI-EKLVPLLDIGDIIIDGGNSEYRDTMRRCRDLKDKGI--LFVG 124 (176)
T ss_dssp HHH-HHHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTC--EEEE
T ss_pred HHH-HHHHhccccCcEEEecCcchhHHHHHHHHHHHhcCC--ceec
Confidence 654 467778999999999999998887788888877655 4455
|
| >d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=98.89 E-value=1.4e-09 Score=99.30 Aligned_cols=111 Identities=20% Similarity=0.245 Sum_probs=83.5
Q ss_pred EEEEEecChhHHHHHHHhhcCCCEEEEECCCCChhH-HHHcCCcccCHHHHhccCCEEEEecCCCccccccccHhHhccC
Q 007512 199 TLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPADR-ARAIGVDLVSFDEAIATADFISLHMPLTPATSKVLNDETFGKM 277 (600)
Q Consensus 199 tiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~~~~-a~~~g~~~~~l~ell~~aDvV~l~~Pl~~~t~~li~~~~l~~m 277 (600)
+|||||+|.||..||++|...|..++++|....... ..+.+. ..+..+.+.++|++++++|..++..... ...+..+
T Consensus 2 kIg~IGlG~MG~~ma~~L~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~v~~~~-~~l~~~~ 79 (156)
T d2cvza2 2 KVAFIGLGAMGYPMAGHLARRFPTLVWNRTFEKALRHQEEFGS-EAVPLERVAEARVIFTCLPTTREVYEVA-EALYPYL 79 (156)
T ss_dssp CEEEECCSTTHHHHHHHHHTTSCEEEECSSTHHHHHHHHHHCC-EECCGGGGGGCSEEEECCSSHHHHHHHH-HHHTTTC
T ss_pred eEEEEeHHHHHHHHHHHHHhCCCEEEEeCCHHHHHHHHHHcCC-cccccccccceeEEEecccchhhhhhhh-ccccccc
Confidence 699999999999999999988887755544332222 233333 3344567778999999999776655443 5678889
Q ss_pred CCceEEEEccCCccccHHHHHHhHhcCCceEEEEec
Q 007512 278 KKGVRIINVARGGVIDEEALVRALDSGRVAQAALDV 313 (600)
Q Consensus 278 k~gailvNvarg~ivde~aL~~aL~~g~i~ga~lDv 313 (600)
+++.++||++....-....+.+.+++..+ -.+|.
T Consensus 80 ~~~~~iid~sT~~p~~~~~~~~~~~~~gi--~~lda 113 (156)
T d2cvza2 80 REGTYWVDATSGEPEASRRLAERLREKGV--TYLDA 113 (156)
T ss_dssp CTTEEEEECSCCCHHHHHHHHHHHHTTTE--EEEEC
T ss_pred cccccccccccCCHHHHHHHHHHHHHcCC--eEEec
Confidence 99999999999998778888889988766 44453
|
| >d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Haemophilus influenzae [TaxId: 727]
Probab=98.84 E-value=4.4e-09 Score=95.14 Aligned_cols=100 Identities=14% Similarity=0.183 Sum_probs=75.8
Q ss_pred eccCCEEEEEe-cChhHHHHHHHhhcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEecCCCccccccccHh
Q 007512 194 SLVGKTLAVLG-FGKVGSEVARRAKGLGMHVIAHDPYAPADRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVLNDE 272 (600)
Q Consensus 194 ~l~gktiGIIG-lG~IG~~vA~~l~~~g~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Pl~~~t~~li~~~ 272 (600)
...=++|+||| +|+||+++|++|+..|++|.+||+.... ..++.+..+|++++++|... +... -..
T Consensus 6 ~~~~~kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~~~~~-----------~~~~~~~~~~~v~~~~~~~~-~~~v-~~~ 72 (152)
T d2pv7a2 6 NSDIHKIVIVGGYGKLGGLFARYLRASGYPISILDREDWA-----------VAESILANADVVIVSVPINL-TLET-IER 72 (152)
T ss_dssp CTTCCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCGG-----------GHHHHHTTCSEEEECSCGGG-HHHH-HHH
T ss_pred CCCCCeEEEEcCCCHHHHHHHHHHHHcCCCcEeccccccc-----------ccchhhhhccccccccchhh-heee-eec
Confidence 34457999999 9999999999999999999999987532 23566789999999999543 4433 356
Q ss_pred HhccCCCceEEEEccCCccccHHHHHHhHhcCCc
Q 007512 273 TFGKMKKGVRIINVARGGVIDEEALVRALDSGRV 306 (600)
Q Consensus 273 ~l~~mk~gailvNvarg~ivde~aL~~aL~~g~i 306 (600)
.+..++++++++|+++...-..+++.+.+..+.+
T Consensus 73 ~~~~~~~~~iiiD~~Svk~~~~~~~~~~~~~~~v 106 (152)
T d2pv7a2 73 LKPYLTENMLLADLTSVKREPLAKMLEVHTGAVL 106 (152)
T ss_dssp HGGGCCTTSEEEECCSCCHHHHHHHHHHCSSEEE
T ss_pred ccccccCCceEEEecccCHHHHHHHHHHccCCEE
Confidence 6778999999999998665445555554444333
|
| >d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Conserved hypothetical protein MTH1747 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=98.83 E-value=3.2e-09 Score=96.31 Aligned_cols=103 Identities=13% Similarity=0.117 Sum_probs=74.4
Q ss_pred CEEEEEecChhHHHHHHHhhcCCCEEEEECCCCCh-hHHHHcCCc-ccCHHHHhccCCEEEEecCCCccccccccHhHhc
Q 007512 198 KTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPA-DRARAIGVD-LVSFDEAIATADFISLHMPLTPATSKVLNDETFG 275 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~~-~~a~~~g~~-~~~l~ell~~aDvV~l~~Pl~~~t~~li~~~~l~ 275 (600)
++|||||+|.||+.+|++|...|++|++||+.... ......++. ..+.+|++++||+|++|+|... ....+. ...
T Consensus 1 MkIgiIG~G~mG~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~diIi~~v~~~~-~~~~~~-~~~- 77 (152)
T d1i36a2 1 LRVGFIGFGEVAQTLASRLRSRGVEVVTSLEGRSPSTIERARTVGVTETSEEDVYSCPVVISAVTPGV-ALGAAR-RAG- 77 (152)
T ss_dssp CEEEEESCSHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTCEECCHHHHHTSSEEEECSCGGG-HHHHHH-HHH-
T ss_pred CEEEEEcHHHHHHHHHHHHHHCCCeEEEEcCchhHHHHHhhhcccccccHHHHHhhcCeEEEEecCch-HHHHHH-hhc-
Confidence 47999999999999999999999999999977633 233333332 3378999999999999999543 332221 122
Q ss_pred cCCCceEEEEccCCccccHHHHHHhHhcC
Q 007512 276 KMKKGVRIINVARGGVIDEEALVRALDSG 304 (600)
Q Consensus 276 ~mk~gailvNvarg~ivde~aL~~aL~~g 304 (600)
-..+.++||++.........+.+.+++.
T Consensus 78 -~~~~~~~id~st~~p~~~~~l~~~~~~~ 105 (152)
T d1i36a2 78 -RHVRGIYVDINNISPETVRMASSLIEKG 105 (152)
T ss_dssp -TTCCSEEEECSCCCHHHHHHHHHHCSSS
T ss_pred -ccCCceeeccCcCCHHHHHHHHHHHhcc
Confidence 2236789999987776667777766654
|
| >d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Streptococcus pyogenes [TaxId: 1314]
Probab=98.67 E-value=1.9e-08 Score=91.24 Aligned_cols=104 Identities=16% Similarity=0.271 Sum_probs=78.5
Q ss_pred CEEEEEecChhHHHHHHHhhcCCCEEEEECCCCCh--hHHHHcCCccc-CHHHHhccCCEEEEecCCCccccccccHhHh
Q 007512 198 KTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPA--DRARAIGVDLV-SFDEAIATADFISLHMPLTPATSKVLNDETF 274 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~~--~~a~~~g~~~~-~l~ell~~aDvV~l~~Pl~~~t~~li~~~~l 274 (600)
++|||||+|+||+++++.|...|.+++.|+++... +.+.+.|+... +.++++++||+|++|++ |+. + .+.+
T Consensus 1 MkIg~IG~G~mG~al~~~l~~~~~~i~v~~r~~~~~~~l~~~~g~~~~~~~~~~~~~~dvIilavk--p~~---~-~~vl 74 (152)
T d2ahra2 1 MKIGIIGVGKMASAIIKGLKQTPHELIISGSSLERSKEIAEQLALPYAMSHQDLIDQVDLVILGIK--PQL---F-ETVL 74 (152)
T ss_dssp CEEEEECCSHHHHHHHHHHTTSSCEEEEECSSHHHHHHHHHHHTCCBCSSHHHHHHTCSEEEECSC--GGG---H-HHHH
T ss_pred CEEEEEeccHHHHHHHHHHHhCCCeEEEEcChHHhHHhhccccceeeechhhhhhhccceeeeecc--hHh---H-HHHh
Confidence 47999999999999999999889999999987532 22355677654 79999999999999997 321 1 4557
Q ss_pred ccCCCceEEEEccCCccccHHHHHHhHhcC-CceEE
Q 007512 275 GKMKKGVRIINVARGGVIDEEALVRALDSG-RVAQA 309 (600)
Q Consensus 275 ~~mk~gailvNvarg~ivde~aL~~aL~~g-~i~ga 309 (600)
+.++++.++|+++.|- ..+.|.+.+..+ ++..+
T Consensus 75 ~~l~~~~~iis~~agi--~~~~l~~~l~~~~~ivr~ 108 (152)
T d2ahra2 75 KPLHFKQPIISMAAGI--SLQRLATFVGQDLPLLRI 108 (152)
T ss_dssp TTSCCCSCEEECCTTC--CHHHHHHHHCTTSCEEEE
T ss_pred hhcccceeEecccccc--cHHHHHhhhcccccchhh
Confidence 7789999999998774 455565555443 45333
|
| >d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Trypanosoma brucei [TaxId: 5691]
Probab=98.57 E-value=6.2e-08 Score=89.63 Aligned_cols=118 Identities=12% Similarity=0.197 Sum_probs=86.7
Q ss_pred CEEEEEecChhHHHHHHHhhcCCCEEEEECCCCCh-hHHHHcCCc---------ccC---HHHHhccCCEEEEecCCCcc
Q 007512 198 KTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPA-DRARAIGVD---------LVS---FDEAIATADFISLHMPLTPA 264 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~~-~~a~~~g~~---------~~~---l~ell~~aDvV~l~~Pl~~~ 264 (600)
++|||||+|.||..+|++|...|++|.+||+.... +...+.+.. ..+ +-..+..++.++++++....
T Consensus 2 MkIGvIGlG~MG~~ma~~L~~~G~~V~~~dr~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (178)
T d1pgja2 2 MDVGVVGLGVMGANLALNIAEKGFKVAVFNRTYSKSEEFMKANASAPFAGNLKAFETMEAFAASLKKPRKALILVQAGAA 81 (178)
T ss_dssp BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSTTGGGEEECSCHHHHHHHBCSSCEEEECCCCSHH
T ss_pred CEEEEEeehHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHcCCccccccchhhhhhhhHHHHhcccceEEEEeecCcch
Confidence 57999999999999999999999999999987632 233333321 112 33456789999999986665
Q ss_pred ccccccHhHhccCCCceEEEEccCCccccHHHHHHhHhcCCceEEEEeccCC
Q 007512 265 TSKVLNDETFGKMKKGVRIINVARGGVIDEEALVRALDSGRVAQAALDVFTE 316 (600)
Q Consensus 265 t~~li~~~~l~~mk~gailvNvarg~ivde~aL~~aL~~g~i~ga~lDv~~~ 316 (600)
....++ .....++++.+++|++....-+...+.+.+....+...-.-|++.
T Consensus 82 ~~~~~~-~~~~~~~~~~iii~~st~~~~~~~~~~~~l~~~~~~~ldapv~g~ 132 (178)
T d1pgja2 82 TDSTIE-QLKKVFEKGDILVDTGNAHFKDQGRRAQQLEAAGLRFLGMGISGG 132 (178)
T ss_dssp HHHHHH-HHHHHCCTTCEEEECCCCCHHHHHHHHHHHHTTTCEEEEEEEESH
T ss_pred hhhhhh-hhhhhccccceecccCccchhHHHHHHHHHhhcceeEecccccCC
Confidence 555553 456668999999999998888888888888877664433334543
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=98.50 E-value=1.6e-07 Score=86.38 Aligned_cols=104 Identities=24% Similarity=0.235 Sum_probs=73.2
Q ss_pred CCEEEEEecChhHHHHHHHhhcCCCEEEEECCCC-ChhHHHHcCC---------------c-ccCHHHHhccCCEEEEec
Q 007512 197 GKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYA-PADRARAIGV---------------D-LVSFDEAIATADFISLHM 259 (600)
Q Consensus 197 gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~-~~~~a~~~g~---------------~-~~~l~ell~~aDvV~l~~ 259 (600)
.||++|||.|.+|..+|..|...|++|.+||++. ..+...+.+. . ..++.|.+++||+|++++
T Consensus 1 sk~iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~aD~iii~v 80 (184)
T d1bg6a2 1 SKTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDADVILIVV 80 (184)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTTCSEEEECS
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhHhcCCCEEEEEE
Confidence 4899999999999999999999999999999975 2333333331 1 236889999999999999
Q ss_pred CCCccccccccHhHhccCCCceEEEEccCCccccHHHHHHhHhc
Q 007512 260 PLTPATSKVLNDETFGKMKKGVRIINVARGGVIDEEALVRALDS 303 (600)
Q Consensus 260 Pl~~~t~~li~~~~l~~mk~gailvNvarg~ivde~aL~~aL~~ 303 (600)
| ...+..++ ++.-..++++.+|+-+ .|....+..+.+.+..
T Consensus 81 ~-~~~~~~~~-~~i~~~l~~~~~iv~~-~g~~~~~~~~~~~~~~ 121 (184)
T d1bg6a2 81 P-AIHHASIA-ANIASYISEGQLIILN-PGATGGALEFRKILRE 121 (184)
T ss_dssp C-GGGHHHHH-HHHGGGCCTTCEEEES-SCCSSHHHHHHHHHHH
T ss_pred c-hhHHHHHH-HHhhhccCCCCEEEEe-CCCCccHHHHHHHHHH
Confidence 9 44455444 3345568899988754 3333333334444443
|
| >d2iafa1 d.81.2.1 (A:4-148) L-serine dehydratase SdhL, N-terminal domain {Legionella pneumophila [TaxId: 446]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: FwdE/GAPDH domain-like superfamily: Serine metabolism enzymes domain family: Serine dehydratase beta chain-like domain: L-serine dehydratase SdhL, N-terminal domain species: Legionella pneumophila [TaxId: 446]
Probab=98.49 E-value=5.1e-08 Score=87.59 Aligned_cols=114 Identities=13% Similarity=-0.015 Sum_probs=73.7
Q ss_pred ccchHHHHHHHHHHHHHHhcCCCCceEEEEEEeecCCCCccccccccHHHHHhhchhhhccchhhccHHHHHh----h--
Q 007512 382 LKPFVELAEKLGRLAVQLVAGGSGVKTVKVSYASSRAPDDLDTRLLRAMITKGLIEPISDVFVNLVNADYTAK----Q-- 455 (600)
Q Consensus 382 ~~p~~~la~~lG~l~~qL~~g~~~~k~v~i~~~Gs~a~~~~~~~~~~~a~l~GlL~~~~~~~vn~vnA~~~A~----e-- 455 (600)
+.|+.....-+..|..+.... .+++|+++++||++ .|.++|++|+|++.||+ ++.++.++..+...+.+ +
T Consensus 5 vGPmrAa~~F~~~l~~~~~~~--~~~~v~v~LyGSLa-~TG~GHgTD~Av~~GL~-G~~P~~~d~~~~~~~~~~i~~~~~ 80 (145)
T d2iafa1 5 VGPMLAANAFLQLLEQKNLFD--KTQRVKVELYGSLA-LTGKGHGTDKAILNGLE-NKAPETVDPASMIPRMHEILDSNL 80 (145)
T ss_dssp HHHHHHHHHHHHHHHHTTCTT--TCCEEEEEEEHHHH-HTCTTSSHHHHHHHHTT-TCCCC-----CHHHHHHHHHHHTE
T ss_pred HHHHHHHHHHHHHHHhCcccC--CccEEEEEEehhhh-hcCCccCccHHHHhhcc-CCCccccChhhhHHHHHHHHhcCc
Confidence 456555555555565555445 68999999999999 99999999999999999 55555566555544322 1
Q ss_pred ------------cCceEEEEEeecCCCCCCCCceEEEEEeecccccccccCCCcE-EEEEE-EEeCCceE
Q 007512 456 ------------RGLRLTEERILLDGSPESPLEFIQVQIANVESKFASAISESGE-IKVEG-RVKDGVPH 511 (600)
Q Consensus 456 ------------~GI~v~~~~~~~~~~~~~~~n~i~v~~~~~~~~~~~~~~~~~~-~~v~G-sv~gG~~~ 511 (600)
.+.++.|...+.- ..|||++++++.+ .+++. .+.+. ||+||.|.
T Consensus 81 l~l~~~~~i~f~~~~di~f~~~~~l---p~HpNgm~f~a~d---------~~g~~l~~~tyySIGGGFI~ 138 (145)
T d2iafa1 81 LNLAGKKEIPFHEATDFLFLQKELL---PKHSNGMRFSAFD---------GNANLLIEQVYYSIGGGFIT 138 (145)
T ss_dssp EEETTTEEEECCHHHHEEEETTCCC---SSCSSEEEEEEEC---------TTSCEEEEEEEEECSSSCEE
T ss_pred ccccccccccccccccceecccccC---CCCCCccEEEEEC---------CCCCEEEEEEEEEcCCeEEe
Confidence 1223444433222 2799999999974 23444 36788 88888653
|
| >d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hypothetical protein TM1727 species: Thermotoga maritima [TaxId: 2336]
Probab=98.41 E-value=4.3e-08 Score=88.31 Aligned_cols=86 Identities=9% Similarity=-0.020 Sum_probs=58.1
Q ss_pred EEEEecChhHHHHHHHhhcCCCEEEEECCCCC-hh-HHHHcCCcccCHHHHhccCCEEEEecCCCccccccccHhHhccC
Q 007512 200 LAVLGFGKVGSEVARRAKGLGMHVIAHDPYAP-AD-RARAIGVDLVSFDEAIATADFISLHMPLTPATSKVLNDETFGKM 277 (600)
Q Consensus 200 iGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~-~~-~a~~~g~~~~~l~ell~~aDvV~l~~Pl~~~t~~li~~~~l~~m 277 (600)
|||||+|+||+.+++.|+.-+..+.+|++... .+ .+...+....++++++++||+|++|+|.. ... +.+..+
T Consensus 2 IgfIG~G~mg~~l~~~L~~~~~~~~v~~R~~~~~~~l~~~~~~~~~~~~~~~~~~DiVil~v~d~-~i~-----~v~~~l 75 (153)
T d2i76a2 2 LNFVGTGTLTRFFLECLKDRYEIGYILSRSIDRARNLAEVYGGKAATLEKHPELNGVVFVIVPDR-YIK-----TVANHL 75 (153)
T ss_dssp CEEESCCHHHHHHHHTTC----CCCEECSSHHHHHHHHHHTCCCCCSSCCCCC---CEEECSCTT-THH-----HHHTTT
T ss_pred EEEEeCcHHHHHHHHHHHhCCCEEEEEeCChhhhcchhhcccccccchhhhhccCcEEEEeccch-hhh-----HHHhhh
Confidence 79999999999999999764333457888762 22 33444555668899999999999999943 222 344445
Q ss_pred -CCceEEEEccCCcc
Q 007512 278 -KKGVRIINVARGGV 291 (600)
Q Consensus 278 -k~gailvNvarg~i 291 (600)
+++.++|+++.+..
T Consensus 76 ~~~~~ivi~~s~~~~ 90 (153)
T d2i76a2 76 NLGDAVLVHCSGFLS 90 (153)
T ss_dssp CCSSCCEEECCSSSC
T ss_pred cccceeeeecccchh
Confidence 47999999987654
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=98.41 E-value=5.8e-07 Score=83.38 Aligned_cols=98 Identities=24% Similarity=0.384 Sum_probs=77.1
Q ss_pred eccCCEEEEEecChhHHHHHHHhhcCCCEEEEECCCC-ChhHHHHcCCccc-----------------------------
Q 007512 194 SLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYA-PADRARAIGVDLV----------------------------- 243 (600)
Q Consensus 194 ~l~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~-~~~~a~~~g~~~~----------------------------- 243 (600)
.+.--++.|||.|..|..-++.++++|.+|.+||.+. ..+..++.+-.+.
T Consensus 26 ~V~pa~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~~~~~~l~~l~~~~i~~~~~~~~~~~~~~gyA~~~s~~~~~~~~ 105 (183)
T d1l7da1 26 TVPPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQA 105 (183)
T ss_dssp EECCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHHHTTCEECCC-----------------------CCHH
T ss_pred CcCCcEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhhcceEEEeccccccccccccchhhcCHHHHHHHH
Confidence 4566799999999999999999999999999999887 4566666654322
Q ss_pred -CHHHHhccCCEEEEecCC-CccccccccHhHhccCCCceEEEEcc--CCcc
Q 007512 244 -SFDEAIATADFISLHMPL-TPATSKVLNDETFGKMKKGVRIINVA--RGGV 291 (600)
Q Consensus 244 -~l~ell~~aDvV~l~~Pl-~~~t~~li~~~~l~~mk~gailvNva--rg~i 291 (600)
.+.+.+++||+|+.++=. ....-.+++++.++.||||++|||++ .|+.
T Consensus 106 ~~l~~~l~~aDlVI~talipG~~aP~lit~~mv~~Mk~GSVIVDvaidqGGn 157 (183)
T d1l7da1 106 EAVLKELVKTDIAITTALIPGKPAPVLITEEMVTKMKPGSVIIDLAVEAGGN 157 (183)
T ss_dssp HHHHHHHTTCSEEEECCCCTTSCCCCCSCHHHHTTSCTTCEEEETTGGGTCS
T ss_pred HHHHHHHHhhhhheeeeecCCcccceeehHHHHHhcCCCcEEEEEeecCCCc
Confidence 133558899999965532 33466789999999999999999997 4554
|
| >d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Phenylalanine dehydrogenase species: Rhodococcus sp., M4 [TaxId: 1831]
Probab=98.38 E-value=1e-06 Score=83.47 Aligned_cols=106 Identities=24% Similarity=0.330 Sum_probs=84.0
Q ss_pred eccCCEEEEEecChhHHHHHHHhhcCCCEEEEECCCC-ChhHHHHcCCcccCHHHHhc-cCCEEEEecCCCccccccccH
Q 007512 194 SLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYA-PADRARAIGVDLVSFDEAIA-TADFISLHMPLTPATSKVLND 271 (600)
Q Consensus 194 ~l~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~-~~~~a~~~g~~~~~l~ell~-~aDvV~l~~Pl~~~t~~li~~ 271 (600)
.|.|||++|-|+|.+|+.+|+.|..+|++|+++|.+. ....+...|.+..+.++++. +||+++-|. +.+.|++
T Consensus 24 ~L~gk~v~IqG~G~VG~~~A~~L~~~Gakvvv~d~d~~~~~~~~~~g~~~~~~~~~~~~~~DI~iPcA-----~~~~I~~ 98 (201)
T d1c1da1 24 SLDGLTVLVQGLGAVGGSLASLAAEAGAQLLVADTDTERVAHAVALGHTAVALEDVLSTPCDVFAPCA-----MGGVITT 98 (201)
T ss_dssp CSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECCGGGGGGCCCSEEEECS-----CSCCBCH
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEecchHHHHHHHHhhcccccCccccccccceeeeccc-----ccccccH
Confidence 6999999999999999999999999999999999876 44566777888888888886 799998765 3567899
Q ss_pred hHhccCCCceEEEEccCCccccHHHHHHhHhcCCc
Q 007512 272 ETFGKMKKGVRIINVARGGVIDEEALVRALDSGRV 306 (600)
Q Consensus 272 ~~l~~mk~gailvNvarg~ivde~aL~~aL~~g~i 306 (600)
+...+++- -+|+..+-+++.++++ -+.|.++.|
T Consensus 99 ~~a~~i~a-k~i~e~AN~p~~~~~~-~~~L~~rgI 131 (201)
T d1c1da1 99 EVARTLDC-SVVAGAANNVIADEAA-SDILHARGI 131 (201)
T ss_dssp HHHHHCCC-SEECCSCTTCBCSHHH-HHHHHHTTC
T ss_pred HHHhhhhh-heeeccCCCCcchhhH-HHHhcccce
Confidence 99988874 3666667777766543 334555444
|
| >d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase (KARI) {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Class I ketol-acid reductoisomerase (KARI) species: Pseudomonas aeruginosa [TaxId: 287]
Probab=98.31 E-value=3.3e-07 Score=84.01 Aligned_cols=90 Identities=24% Similarity=0.401 Sum_probs=75.4
Q ss_pred eccCCEEEEEecChhHHHHHHHhhcCCCEEEEECC-CC-ChhHHHHcCCcccCHHHHhccCCEEEEecCCCccccccccH
Q 007512 194 SLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDP-YA-PADRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVLND 271 (600)
Q Consensus 194 ~l~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~-~~-~~~~a~~~g~~~~~l~ell~~aDvV~l~~Pl~~~t~~li~~ 271 (600)
-|++|+|+|||||.-|+.=|..|+.-|++|++-=+ .. +.+.|++.|++..+++|+.++||+|.+.+| ++.-..+..+
T Consensus 13 ~ik~k~IaViGYGsQG~AhAlNLrDSG~~V~VGLr~gs~s~~~A~~~Gf~v~~~~eA~~~aDiim~L~P-D~~q~~vy~~ 91 (182)
T d1np3a2 13 IIQGKKVAIIGYGSQGHAHACNLKDSGVDVTVGLRSGSATVAKAEAHGLKVADVKTAVAAADVVMILTP-DEFQGRLYKE 91 (182)
T ss_dssp HHHTSCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHTTCEEECHHHHHHTCSEEEECSC-HHHHHHHHHH
T ss_pred HHCCCEEEEEeeCcHhHHHHhhhhhcCCCEEEEcCCCCccHHHHhhhccccccHHHHhhhcCeeeeecc-hHHHHHHHHH
Confidence 57899999999999999999999999998876533 32 457788999999999999999999999999 3333455666
Q ss_pred hHhccCCCceEEE
Q 007512 272 ETFGKMKKGVRII 284 (600)
Q Consensus 272 ~~l~~mk~gailv 284 (600)
.....||+|..+.
T Consensus 92 ~I~p~lk~g~~L~ 104 (182)
T d1np3a2 92 EIEPNLKKGATLA 104 (182)
T ss_dssp HTGGGCCTTCEEE
T ss_pred hhhhhcCCCcEEE
Confidence 7888899998765
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=98.30 E-value=6.5e-07 Score=81.96 Aligned_cols=93 Identities=26% Similarity=0.351 Sum_probs=74.8
Q ss_pred ccCCEEEEEecChhHHHHHHHhhcCCCEEEEECCCCC-hhHHHHcC---Ccc-----cCHHHHhccCCEEEEecCC-Ccc
Q 007512 195 LVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAP-ADRARAIG---VDL-----VSFDEAIATADFISLHMPL-TPA 264 (600)
Q Consensus 195 l~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~-~~~a~~~g---~~~-----~~l~ell~~aDvV~l~~Pl-~~~ 264 (600)
+.-.++.|||.|..|..-++.++++|.+|.+||.+.. .+..+... ++. ..+++.+++||+|+.++-. ...
T Consensus 30 v~pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~aDivI~aalipG~~ 109 (168)
T d1pjca1 30 VKPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGSRVELLYSNSAEIETAVAEADLLIGAVLVPGRR 109 (168)
T ss_dssp BCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGSEEEECCHHHHHHHHHTCSEEEECCCCTTSS
T ss_pred CCCcEEEEECCChHHHHHHHHHhhCCCEEEEEeCcHHHHHHHHHhhcccceeehhhhhhHHHhhccCcEEEEeeecCCcc
Confidence 5678999999999999999999999999999998763 22222221 211 2478899999999987642 445
Q ss_pred ccccccHhHhccCCCceEEEEcc
Q 007512 265 TSKVLNDETFGKMKKGVRIINVA 287 (600)
Q Consensus 265 t~~li~~~~l~~mk~gailvNva 287 (600)
.-.+|.++.++.||||+++||++
T Consensus 110 aP~lIt~~mv~~Mk~GSVIVDva 132 (168)
T d1pjca1 110 APILVPASLVEQMRTGSVIVDVA 132 (168)
T ss_dssp CCCCBCHHHHTTSCTTCEEEETT
T ss_pred cCeeecHHHHhhcCCCcEEEEee
Confidence 77899999999999999999986
|
| >d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Neisseria meningitidis, serogroup B [TaxId: 487]
Probab=98.29 E-value=3.2e-07 Score=82.68 Aligned_cols=104 Identities=18% Similarity=0.257 Sum_probs=71.2
Q ss_pred CEEEEEecChhHHHHHHHhhcCC-CEEEEECCCCC-hh-HHHHcCCcccCHHHHhccCCEEEEecCCCccccccccHhHh
Q 007512 198 KTLAVLGFGKVGSEVARRAKGLG-MHVIAHDPYAP-AD-RARAIGVDLVSFDEAIATADFISLHMPLTPATSKVLNDETF 274 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~g-~~V~~~d~~~~-~~-~a~~~g~~~~~l~ell~~aDvV~l~~Pl~~~t~~li~~~~l 274 (600)
++|||||+|+||+++++.|...| .+|.+||++.. .+ .+.+.|+...+-.+.+.+||+|++|+| ..+.. +.+
T Consensus 1 MkI~fIG~G~MG~ai~~~l~~~~~~~i~v~~r~~~~~~~l~~~~~~~~~~~~~~v~~~Div~lavk-P~~~~-----~v~ 74 (152)
T d1yqga2 1 MNVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGAEKRERLEKELGVETSATLPELHSDDVLILAVK-PQDME-----AAC 74 (152)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCSCEEEEECSSHHHHHHHHHHTCCEEESSCCCCCTTSEEEECSC-HHHHH-----HHH
T ss_pred CEEEEEcCcHHHHHHHHHHHHCCCCcEEEEeCChhHHHHhhhhcccccccccccccccceEEEecC-HHHHH-----HhH
Confidence 47999999999999999887555 89999999873 22 344567766544455788999999997 22222 223
Q ss_pred ccC-CCceEEEEccCCccccHHHHHHhHhc-CCceEE
Q 007512 275 GKM-KKGVRIINVARGGVIDEEALVRALDS-GRVAQA 309 (600)
Q Consensus 275 ~~m-k~gailvNvarg~ivde~aL~~aL~~-g~i~ga 309 (600)
..+ +.+.++|++.-|-- .+.+.+.+.. .++..+
T Consensus 75 ~~l~~~~~~viS~~ag~~--~~~l~~~l~~~~~iir~ 109 (152)
T d1yqga2 75 KNIRTNGALVLSVAAGLS--VGTLSRYLGGTRRIVRV 109 (152)
T ss_dssp TTCCCTTCEEEECCTTCC--HHHHHHHTTSCCCEEEE
T ss_pred HHHhhcccEEeecccCCC--HHHHHHHhCcCcceEee
Confidence 333 34789999887764 5556666643 355444
|
| >d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.28 E-value=2.3e-06 Score=80.28 Aligned_cols=129 Identities=16% Similarity=0.131 Sum_probs=87.0
Q ss_pred CEEEEEecChhHHHHHHHhhcCCCEEEEECCCCC-hhHHH-----------HcCC------------------c-ccCHH
Q 007512 198 KTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAP-ADRAR-----------AIGV------------------D-LVSFD 246 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~-~~~a~-----------~~g~------------------~-~~~l~ 246 (600)
|+|+|||.|.||+.+|..+...|++|+.||++.. .+.+. +.+. . ..++.
T Consensus 5 kkvaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~~l~~a~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~d~~ 84 (192)
T d1f0ya2 5 KHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATSTDAA 84 (192)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEESCHH
T ss_pred EEEEEECcCHHHHHHHHHHHhCCCcEEEEECChHHHHHHHhhHHHHHHHHHHhhhhccchhhHHHHHHHHhhccccchhH
Confidence 6999999999999999999999999999998762 22111 1111 1 22677
Q ss_pred HHhccCCEEEEecCCCccccccccHhHhccCCCceEEEEccCCccccHHHHHHhHhc-CCceEEEEeccCCCCCCCCCcc
Q 007512 247 EAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVIDEEALVRALDS-GRVAQAALDVFTEEPPPADSKL 325 (600)
Q Consensus 247 ell~~aDvV~l~~Pl~~~t~~li~~~~l~~mk~gailvNvarg~ivde~aL~~aL~~-g~i~ga~lDv~~~EP~~~~~~L 325 (600)
+.+++||+|+=|+|-..+.+.-+-++.=..++++++|....++-. ...+...+.. .++ .+++-|.+- ...||
T Consensus 85 ~a~~~ad~ViEav~E~l~~K~~v~~~l~~~~~~~~ilasnTS~l~--i~~la~~~~~p~r~--ig~HffnP~---~~~~l 157 (192)
T d1f0ya2 85 SVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSSLQ--ITSIANATTRQDRF--AGLHFFNPV---PVMKL 157 (192)
T ss_dssp HHTTSCSEEEECCCSCHHHHHHHHHHHTTTSCTTCEEEECCSSSC--HHHHHTTSSCGGGE--EEEEECSST---TTCCE
T ss_pred hhhcccceehhhcccchhHHHHHHHHHhhhcccCceeeccCcccc--cchhhhhccCHhHE--Eeecccccc---CcccE
Confidence 889999999999998777665554555555899988877655443 3445444443 244 555555332 23466
Q ss_pred ccCCcEEEcCCCC
Q 007512 326 VQHERVTVTPHLG 338 (600)
Q Consensus 326 ~~~~nvilTPH~~ 338 (600)
.+ +.||..
T Consensus 158 VE-----Iv~g~~ 165 (192)
T d1f0ya2 158 VE-----VIKTPM 165 (192)
T ss_dssp EE-----EECCTT
T ss_pred EE-----EcCCCC
Confidence 54 566643
|
| >d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamyl tRNA-reductase middle domain species: Archaeon Methanopyrus kandleri [TaxId: 2320]
Probab=98.09 E-value=4.8e-06 Score=75.71 Aligned_cols=93 Identities=24% Similarity=0.355 Sum_probs=70.4
Q ss_pred eccCCEEEEEecChhHHHHHHHhhcCCC-EEEEECCCCC--hhHHHHcCCccc---CHHHHhccCCEEEEecCCCccccc
Q 007512 194 SLVGKTLAVLGFGKVGSEVARRAKGLGM-HVIAHDPYAP--ADRARAIGVDLV---SFDEAIATADFISLHMPLTPATSK 267 (600)
Q Consensus 194 ~l~gktiGIIGlG~IG~~vA~~l~~~g~-~V~~~d~~~~--~~~a~~~g~~~~---~l~ell~~aDvV~l~~Pl~~~t~~ 267 (600)
.+.++++.|||.|.||+.+++.|...|. ++..+++... ...+.+.|.... ++.+.+.++|+|+.|++.. ..
T Consensus 21 ~l~~~~ilviGaG~~g~~v~~~L~~~g~~~i~v~nRt~~ka~~l~~~~~~~~~~~~~~~~~l~~~Divi~atss~---~~ 97 (159)
T d1gpja2 21 SLHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDLGGEAVRFDELVDHLARSDVVVSATAAP---HP 97 (159)
T ss_dssp CCTTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHHTCEECCGGGHHHHHHTCSEEEECCSSS---SC
T ss_pred CcccCeEEEECCCHHHHHHHHHHHhcCCcEEEEEcCcHHHHHHHHHhhhcccccchhHHHHhccCCEEEEecCCC---Cc
Confidence 6889999999999999999999998887 7999998752 234556666543 5677888999999998733 56
Q ss_pred cccHhHhcc------CCCceEEEEccCC
Q 007512 268 VLNDETFGK------MKKGVRIINVARG 289 (600)
Q Consensus 268 li~~~~l~~------mk~gailvNvarg 289 (600)
+++.+.+.. -++..+++|.+..
T Consensus 98 ii~~~~i~~~~~~r~~~~~~~iiDlavP 125 (159)
T d1gpja2 98 VIHVDDVREALRKRDRRSPILIIDIANP 125 (159)
T ss_dssp CBCHHHHHHHHHHCSSCCCEEEEECCSS
T ss_pred cccHhhhHHHHHhcccCCCeEEEeecCC
Confidence 677776642 1345688888744
|
| >d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Siroheme synthase CysG, domain 1 species: Salmonella typhimurium [TaxId: 90371]
Probab=98.08 E-value=1.6e-06 Score=74.17 Aligned_cols=90 Identities=13% Similarity=0.031 Sum_probs=68.9
Q ss_pred eeccCCEEEEEecChhHHHHHHHhhcCCCEEEEECCCCChhHHH---HcCCccc---CHHHHhccCCEEEEecCCCcccc
Q 007512 193 VSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPADRAR---AIGVDLV---SFDEAIATADFISLHMPLTPATS 266 (600)
Q Consensus 193 ~~l~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~~~~a~---~~g~~~~---~l~ell~~aDvV~l~~Pl~~~t~ 266 (600)
.+|+||++.|||.|.+|.+-|+.|..+|++|+++++....+... +.++.+. --++.+..+++|+.+...
T Consensus 8 l~l~~k~vlVvG~G~va~~ka~~ll~~ga~v~v~~~~~~~~~~~~~~~~~i~~~~~~~~~~dl~~~~lv~~at~d----- 82 (113)
T d1pjqa1 8 CQLRDRDCLIVGGGDVAERKARLLLEAGARLTVNALTFIPQFTVWANEGMLTLVEGPFDETLLDSCWLAIAATDD----- 82 (113)
T ss_dssp ECCBTCEEEEECCSHHHHHHHHHHHHTTBEEEEEESSCCHHHHHHHTTTSCEEEESSCCGGGGTTCSEEEECCSC-----
T ss_pred EEeCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeccCChHHHHHHhcCCceeeccCCCHHHhCCCcEEeecCCC-----
Confidence 58999999999999999999999999999999999988554322 2233221 123567889999887652
Q ss_pred ccccHhHhccCCCceEEEEcc
Q 007512 267 KVLNDETFGKMKKGVRIINVA 287 (600)
Q Consensus 267 ~li~~~~l~~mk~gailvNva 287 (600)
..+|.+....+|+..++||++
T Consensus 83 ~~~n~~i~~~a~~~~ilVNv~ 103 (113)
T d1pjqa1 83 DTVNQRVSDAAESRRIFCNVV 103 (113)
T ss_dssp HHHHHHHHHHHHHTTCEEEET
T ss_pred HHHHHHHHHHHHHcCCEEEeC
Confidence 235777777788888999975
|
| >d1qmga2 c.2.1.6 (A:82-307) Class II ketol-acid reductoisomerase (KARI) {Spinach (Spinacia oleracea) [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Class II ketol-acid reductoisomerase (KARI) species: Spinach (Spinacia oleracea) [TaxId: 3562]
Probab=98.05 E-value=3.2e-06 Score=79.90 Aligned_cols=90 Identities=22% Similarity=0.277 Sum_probs=71.5
Q ss_pred eccC-CEEEEEecChhHHHHHHHhhc------CCCEEE-EECCC-CChhHHHHcCCc-----ccCHHHHhccCCEEEEec
Q 007512 194 SLVG-KTLAVLGFGKVGSEVARRAKG------LGMHVI-AHDPY-APADRARAIGVD-----LVSFDEAIATADFISLHM 259 (600)
Q Consensus 194 ~l~g-ktiGIIGlG~IG~~vA~~l~~------~g~~V~-~~d~~-~~~~~a~~~g~~-----~~~l~ell~~aDvV~l~~ 259 (600)
-+.| |+|+|||||.-|++=|..||. .|.+|+ +..+. .+.+.|++.|++ ..+.+|+.++||+|.+.+
T Consensus 40 ~~kg~KkIaViGYGsQG~AhAlNLrDSG~~~~sgv~V~VGLr~gs~S~~kA~~dGf~v~~~~v~~v~EAv~~ADiVmiLl 119 (226)
T d1qmga2 40 AFKGIKQIGVIGWGSQAPAQAQNLKDSLTEAKSDVVVKIGLRKGSNSFAEARAAGFSEENGTLGDMWETISGSDLVLLLI 119 (226)
T ss_dssp HTTTCSEEEEECCSSHHHHHHHHHHHHHHHTTCCCEEEEEECTTCSCHHHHHHTTCCGGGTCEEEHHHHHHTCSEEEECS
T ss_pred HhcCCCEEEEEEeccHHHHHHHhChhhcccccCCceEEEEeCCCChhHHHHHHcCCccCCCcccCHHHHHhhCCEEEEec
Confidence 3678 899999999999999999997 556664 45554 477889999986 457899999999999999
Q ss_pred CCCccccccccHhHhccCCCceEEEE
Q 007512 260 PLTPATSKVLNDETFGKMKKGVRIIN 285 (600)
Q Consensus 260 Pl~~~t~~li~~~~l~~mk~gailvN 285 (600)
|... -..+.+ +....||+|+.+.-
T Consensus 120 PDe~-Q~~vy~-~I~p~Lk~G~~L~F 143 (226)
T d1qmga2 120 SDSA-QADNYE-KVFSHMKPNSILGL 143 (226)
T ss_dssp CHHH-HHHHHH-HHHHHSCTTCEEEE
T ss_pred chHH-HHHHHH-HHHHhcCCCceeee
Confidence 9443 334554 67788999988764
|
| >d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Fatty oxidation complex alpha subunit, middle domain species: Pseudomonas fragi [TaxId: 296]
Probab=98.02 E-value=4.5e-06 Score=77.70 Aligned_cols=129 Identities=17% Similarity=0.183 Sum_probs=85.6
Q ss_pred CEEEEEecChhHHHHHHHhhcCCCEEEEECCCCC-hhHHHH-----------cCC-------------cccCHHHHhccC
Q 007512 198 KTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAP-ADRARA-----------IGV-------------DLVSFDEAIATA 252 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~-~~~a~~-----------~g~-------------~~~~l~ell~~a 252 (600)
++|+|||.|.||+.+|..+...|++|..||++.. .+.+.+ .+. ...+..+.+.+|
T Consensus 5 ~~vaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a 84 (186)
T d1wdka3 5 KQAAVLGAGIMGGGIAYQSASKGTPILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPTLSYGDFGNV 84 (186)
T ss_dssp SSEEEECCHHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEEESSSTTGGGC
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHHHHhhhhhhhhhhHHhhhcccccchhhhhhhhceeeccccccccccc
Confidence 5799999999999999999999999999999752 222111 110 111222357899
Q ss_pred CEEEEecCCCccccccccHhHhccCCCceEEEEccCCccccHHHHHHhHhc-CCceEEEEeccCCCCCCCCCccccCCcE
Q 007512 253 DFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVIDEEALVRALDS-GRVAQAALDVFTEEPPPADSKLVQHERV 331 (600)
Q Consensus 253 DvV~l~~Pl~~~t~~li~~~~l~~mk~gailvNvarg~ivde~aL~~aL~~-g~i~ga~lDv~~~EP~~~~~~L~~~~nv 331 (600)
|+|+-++|-+.+.+.-+-.+.-+.++++++|....++-. ...|.+.+.. .++ .|++.|.+-+ ..||.| +
T Consensus 85 dlViEav~E~l~~K~~lf~~l~~~~~~~~IiaSnTS~l~--i~~la~~~~~p~r~--~g~Hf~nP~~---~~~lVE---i 154 (186)
T d1wdka3 85 DLVVEAVVENPKVKQAVLAEVENHVREDAILASNTSTIS--ISLLAKALKRPENF--VGMHFFNPVH---MMPLVE---V 154 (186)
T ss_dssp SEEEECCCSCHHHHHHHHHHHHTTSCTTCEEEECCSSSC--HHHHGGGCSCGGGE--EEEECCSSTT---TCCEEE---E
T ss_pred ceeeeeecchHHHHHHHHHHHHhhcCCCeeEEecccccc--HHHHHHhccCchhe--EeeccccCcc---cCCeEE---E
Confidence 999999998877776555666666899999887766654 3445544443 344 4555544332 356664 4
Q ss_pred EEcCC
Q 007512 332 TVTPH 336 (600)
Q Consensus 332 ilTPH 336 (600)
+-+|+
T Consensus 155 v~~~~ 159 (186)
T d1wdka3 155 IRGEK 159 (186)
T ss_dssp EECSS
T ss_pred CCCCC
Confidence 44554
|
| >d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: GDP-mannose 6-dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.90 E-value=2.1e-05 Score=73.86 Aligned_cols=94 Identities=17% Similarity=0.176 Sum_probs=64.4
Q ss_pred CEEEEEecChhHHHHHHHhhcCCCEEEEECCCCChhHHHHcC--------------------C--cccCHHHHhccCCEE
Q 007512 198 KTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPADRARAIG--------------------V--DLVSFDEAIATADFI 255 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~~~~a~~~g--------------------~--~~~~l~ell~~aDvV 255 (600)
++|+|||+|.+|..+|..+...|++|++||.+...-.....| . ...++++.+..||++
T Consensus 1 MkI~ViGlG~vGl~~a~~la~~g~~V~g~D~n~~~i~~ln~g~~p~~e~~~~~~l~~~~~~~~~~~~~~~~~~i~~~d~i 80 (202)
T d1mv8a2 1 MRISIFGLGYVGAVCAGCLSARGHEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGRQTGRLSGTTDFKKAVLDSDVS 80 (202)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHHTCSEE
T ss_pred CEEEEECCCHhHHHHHHHHHhCCCcEEEEeCCHHHHHHhcccCCcccchhhhhhhhhhhcccccccCCCHHHHHhhCCEE
Confidence 579999999999999999999999999999754211111111 1 123678889999999
Q ss_pred EEecCCCcccc----------ccccH--hHhccCCCceEEEEccCCccc
Q 007512 256 SLHMPLTPATS----------KVLND--ETFGKMKKGVRIINVARGGVI 292 (600)
Q Consensus 256 ~l~~Pl~~~t~----------~li~~--~~l~~mk~gailvNvarg~iv 292 (600)
++|+| ||... ..++. ..+...+++.++|-.+...+=
T Consensus 81 ~i~Vp-TP~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~liii~STv~pG 128 (202)
T d1mv8a2 81 FICVG-TPSKKNGDLDLGYIETVCREIGFAIREKSERHTVVVRSTVLPG 128 (202)
T ss_dssp EECCC-CCBCTTSSBCCHHHHHHHHHHHHHHTTCCSCCEEEECSCCCTT
T ss_pred EEecC-ccccccccccchhhhhhhhhhhheeecccCCcceeeccccCCc
Confidence 99999 43111 11111 233456788899988875443
|
| >d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: UDP-glucose dehydrogenase (UDPGDH) species: Streptococcus pyogenes [TaxId: 1314]
Probab=97.75 E-value=0.00029 Score=65.12 Aligned_cols=132 Identities=14% Similarity=0.127 Sum_probs=83.3
Q ss_pred CEEEEEecChhHHHHHHHhhcCCCEEEEECCCCChhHHHHcCCc--------------------ccCHHHHhccCCEEEE
Q 007512 198 KTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPADRARAIGVD--------------------LVSFDEAIATADFISL 257 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~~~~a~~~g~~--------------------~~~l~ell~~aDvV~l 257 (600)
++|+|||+|.+|..+|..+ +.|++|++||.+...-.....|.. ..+......++|++++
T Consensus 1 MkI~ViGlG~vGl~~a~~~-a~g~~V~g~Din~~~v~~l~~g~~p~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~ii~v 79 (196)
T d1dlja2 1 MKIAVAGSGYVGLSLGVLL-SLQNEVTIVDILPSKVDKINNGLSPIQDEYIEYYLKSKQLSIKATLDSKAAYKEAELVII 79 (196)
T ss_dssp CEEEEECCSHHHHHHHHHH-TTTSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHHHHHHCSEEEE
T ss_pred CEEEEECCChhHHHHHHHH-HCCCcEEEEECCHHHHHHHhhcccccchhhHHHHhhhhhhhhhccchhhhhhhccccccc
Confidence 5799999999999999877 469999999987532222222211 1245566789999999
Q ss_pred ecCCCccccc-cccH-------hHhccCCCceEEEEccCCccccHHHHHHhHhcCCceEEEEeccCCCCCCCCC---ccc
Q 007512 258 HMPLTPATSK-VLND-------ETFGKMKKGVRIINVARGGVIDEEALVRALDSGRVAQAALDVFTEEPPPADS---KLV 326 (600)
Q Consensus 258 ~~Pl~~~t~~-li~~-------~~l~~mk~gailvNvarg~ivde~aL~~aL~~g~i~ga~lDv~~~EP~~~~~---~L~ 326 (600)
|+|....... ..+. +.+...+++.+++--+.-.+-..+.+..-+.+.++. +-+|-+...+ .+.
T Consensus 80 ~vpt~~~~~~~~~~~~~v~~~~~~~~~~~~~~~iii~Stv~pgt~~~~~~~~~~~~~~------~~PE~i~~G~ai~d~~ 153 (196)
T d1dlja2 80 ATPTNYNSRINYFDTQHVETVIKEVLSVNSHATLIIKSTIPIGFITEMRQKFQTDRII------FSPEFLRESKALYDNL 153 (196)
T ss_dssp CCCCCEETTTTEECCHHHHHHHHHHHHHCSSCEEEECSCCCTTHHHHHHHHTTCSCEE------ECCCCCCTTSTTHHHH
T ss_pred cCCccccccCCCcceeEEeehhhhhhhcccceeEEeeeecCceeeeeeeeccchhhhc------cchhhcchhhhHhhcc
Confidence 9995543221 1111 122335677788777766555566676666666552 5566554333 345
Q ss_pred cCCcEEEcCC
Q 007512 327 QHERVTVTPH 336 (600)
Q Consensus 327 ~~~nvilTPH 336 (600)
..+++++--+
T Consensus 154 ~p~riv~G~~ 163 (196)
T d1dlja2 154 YPSRIIVSCE 163 (196)
T ss_dssp SCSCEEEECC
T ss_pred CCCEEEEeCC
Confidence 6677765544
|
| >d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Probab=97.73 E-value=1.3e-05 Score=71.90 Aligned_cols=90 Identities=16% Similarity=0.158 Sum_probs=64.4
Q ss_pred CEEEEEecChhHHHHHHHhhcCCCEEEEECCCCCh-hHHHHcCCc--------ccCHHHHhccCCEEEEecCCCcccccc
Q 007512 198 KTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPA-DRARAIGVD--------LVSFDEAIATADFISLHMPLTPATSKV 268 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~~-~~a~~~g~~--------~~~l~ell~~aDvV~l~~Pl~~~t~~l 268 (600)
++|+|||.|.||+.+|..|...|.+|..+++.... ......+.. ..+..+.+..+|+|++++|- ..+...
T Consensus 1 MkI~IiGaG~iG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~iii~vka-~~~~~~ 79 (167)
T d1ks9a2 1 MKITVLGCGALGQLWLTALCKQGHEVQGWLRVPQPYCSVNLVETDGSIFNESLTANDPDFLATSDLLLVTLKA-WQVSDA 79 (167)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSEEEEEEECTTSCEEEEEEEESCHHHHHTCSEEEECSCG-GGHHHH
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCceEEEEcCHHHhhhhccccCCccccccccccchhhhhcccceEEEeecc-cchHHH
Confidence 58999999999999999999999999999987632 111111111 12455778899999999994 445544
Q ss_pred ccHhHhccCCCceEEEEccCC
Q 007512 269 LNDETFGKMKKGVRIINVARG 289 (600)
Q Consensus 269 i~~~~l~~mk~gailvNvarg 289 (600)
+ +.....+++++.++.+.-|
T Consensus 80 ~-~~l~~~~~~~~~Iv~~qNG 99 (167)
T d1ks9a2 80 V-KSLASTLPVTTPILLIHNG 99 (167)
T ss_dssp H-HHHHTTSCTTSCEEEECSS
T ss_pred H-HhhccccCcccEEeeccCc
Confidence 3 2334456788888888665
|
| >d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=97.68 E-value=3e-05 Score=71.42 Aligned_cols=91 Identities=19% Similarity=0.278 Sum_probs=63.2
Q ss_pred CEEEEEecChhHHHHHHHhhcCCCEEEEECCCCChhHHHHc--C-------C--------cccCHHHHhccCCEEEEecC
Q 007512 198 KTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPADRARAI--G-------V--------DLVSFDEAIATADFISLHMP 260 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~~~~a~~~--g-------~--------~~~~l~ell~~aDvV~l~~P 260 (600)
++|+|||.|.+|.++|..|...|.+|..|.+....+..... + . ...+++++++.||+|++++|
T Consensus 1 MkI~ViGaG~~GtalA~~la~~g~~V~l~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ad~Ii~avp 80 (180)
T d1txga2 1 MIVSILGAGAMGSALSVPLVDNGNEVRIWGTEFDTEILKSISAGREHPRLGVKLNGVEIFWPEQLEKCLENAEVVLLGVS 80 (180)
T ss_dssp CEEEEESCCHHHHHHHHHHHHHCCEEEEECCGGGHHHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHHHTTCSEEEECSC
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEEecccHHHHHHHhhhhhhhhhcchhccccccccccHHHHHhccchhhcccc
Confidence 58999999999999999999889999999775433322221 1 0 12368899999999999999
Q ss_pred CCccccccccHhHhccCCCceEEEEccCCcc
Q 007512 261 LTPATSKVLNDETFGKMKKGVRIINVARGGV 291 (600)
Q Consensus 261 l~~~t~~li~~~~l~~mk~gailvNvarg~i 291 (600)
....+.++. +....+++. .++.+..|..
T Consensus 81 -s~~~~~~~~-~l~~~l~~~-~ii~~tkg~~ 108 (180)
T d1txga2 81 -TDGVLPVMS-RILPYLKDQ-YIVLISKGLI 108 (180)
T ss_dssp -GGGHHHHHH-HHTTTCCSC-EEEECCCSEE
T ss_pred -hhhhHHHHH-hhccccccc-eecccccCcc
Confidence 444555543 334446665 5555666643
|
| >d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD species: Escherichia coli [TaxId: 562]
Probab=97.68 E-value=1.3e-05 Score=65.83 Aligned_cols=65 Identities=22% Similarity=0.220 Sum_probs=47.8
Q ss_pred eccCCEEEEEecChhHHHHHHHhhcCCCEEEEECCCCChhHHHH--cCCcc--cC-HHHHhccCCEEEEe
Q 007512 194 SLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPADRARA--IGVDL--VS-FDEAIATADFISLH 258 (600)
Q Consensus 194 ~l~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~~~~a~~--~g~~~--~~-l~ell~~aDvV~l~ 258 (600)
+++||+|.|+|+|..|.++|+.|...|++|++||.....+.... .+... .. -++.+.++|+|++.
T Consensus 2 ~~~~K~v~ViGlG~sG~s~a~~L~~~g~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~S 71 (93)
T d2jfga1 2 DYQGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTPPGLDKLPEAVERHTGSLNDEWLMAADLIVAS 71 (93)
T ss_dssp CCTTCCEEEECCSHHHHHHHHHHHHTTCCCEEEESSSSCTTGGGSCTTSCEEESBCCHHHHHHCSEEEEC
T ss_pred CcCCCEEEEEeECHHHHHHHHHHHHCCCEEEEeeCCcCchhHHHHhhccceeecccchhhhccCCEEEEC
Confidence 57899999999999999999999999999999998663221111 12221 11 24567888998874
|
| >d2fgca2 d.58.18.6 (A:27-104) Acetolactate synthase small subunit, IlvH {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: ACT-like family: IlvH-like domain: Acetolactate synthase small subunit, IlvH species: Thermotoga maritima [TaxId: 2336]
Probab=97.68 E-value=5.1e-05 Score=60.30 Aligned_cols=73 Identities=15% Similarity=0.266 Sum_probs=60.2
Q ss_pred ccEEEEEecCCCCChhhHHhhhhcCCccccceEeeeecCCCcEEEEEEe--CCCCcHHHHHHHhcCCCcceEEEe
Q 007512 526 GSIILCRQVDQPGMIGTVGSILGSENVNVSFMSVGRVAPRKHAVMAIGV--DEQPRKETLKKIGDVPAIEEFVFL 598 (600)
Q Consensus 526 ~~~Liv~~~D~pG~Ia~V~~iL~~~~INIa~m~v~R~~~g~~al~~i~~--D~~~~~~~l~~l~~~~~v~~v~~i 598 (600)
.|++-+...|+||++++|++++...|+||.++.++..+..+-+-|.|-+ |+..-+.+.++|.++..|.+|.-+
T Consensus 3 ~~tisvlv~n~pGvL~Ri~~lF~rRg~NI~SL~v~~te~~~iSR~tivv~g~~~~i~qi~kQl~KlidV~~V~dl 77 (78)
T d2fgca2 3 EHLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVKGDDKTIEQIEKQAYKLVEVVKVTPI 77 (78)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEEEECTTHHHHHHHHHTTSTTEEEEEEC
T ss_pred eEEEEEEEeCCCcHHHHHHHHHhhCCcceEEEEEeecCCCCeEEEEEEEEcCHHHHHHHHHHHhCCcCEEEEEeC
Confidence 4678888899999999999999999999999999998887776555544 444455788999999998888654
|
| >d2pc6a2 d.58.18.6 (A:1-77) Acetolactate synthase small subunit, IlvH {Nitrosomonas europaea [TaxId: 915]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: ACT-like family: IlvH-like domain: Acetolactate synthase small subunit, IlvH species: Nitrosomonas europaea [TaxId: 915]
Probab=97.66 E-value=2.8e-05 Score=61.69 Aligned_cols=71 Identities=13% Similarity=0.229 Sum_probs=59.4
Q ss_pred cEEEEEecCCCCChhhHHhhhhcCCccccceEeeeecCCCcEEEEEEeC--CCCcHHHHHHHhcCCCcceEEE
Q 007512 527 SIILCRQVDQPGMIGTVGSILGSENVNVSFMSVGRVAPRKHAVMAIGVD--EQPRKETLKKIGDVPAIEEFVF 597 (600)
Q Consensus 527 ~~Liv~~~D~pG~Ia~V~~iL~~~~INIa~m~v~R~~~g~~al~~i~~D--~~~~~~~l~~l~~~~~v~~v~~ 597 (600)
|++.+...|+||++++|++++...|+||.++.++..+..+-+-|.|.++ +..-+.+.++|.++..|.+|.-
T Consensus 3 ~tisv~veN~pGvL~Ris~lF~rRg~NI~Sltv~~te~~~iSRmtivv~~~~~~i~qi~kQL~KlvdVi~V~d 75 (77)
T d2pc6a2 3 HIISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTNGPDEIVEQITKQLNKLIEVVKLID 75 (77)
T ss_dssp EEEEEEEECSTTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEEEEECHHHHHHHHHHHHHSTTEEEEEE
T ss_pred EEEEEEEECCccHHHHHHHHHhccCcceEEEEEeccCCCCeEEEEEEEECCHHHHHHHHHHHhCCcCEEEEEE
Confidence 6788888999999999999999999999999999988888776666654 3334468888899998888764
|
| >d2f1fa1 d.58.18.6 (A:2-77) Acetolactate synthase small subunit, IlvH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: ACT-like family: IlvH-like domain: Acetolactate synthase small subunit, IlvH species: Escherichia coli [TaxId: 562]
Probab=97.66 E-value=4.4e-05 Score=60.39 Aligned_cols=71 Identities=11% Similarity=0.125 Sum_probs=57.0
Q ss_pred cEEEEEecCCCCChhhHHhhhhcCCccccceEeeeecCCCcEEEEEEeCCC--CcHHHHHHHhcCCCcceEEE
Q 007512 527 SIILCRQVDQPGMIGTVGSILGSENVNVSFMSVGRVAPRKHAVMAIGVDEQ--PRKETLKKIGDVPAIEEFVF 597 (600)
Q Consensus 527 ~~Liv~~~D~pG~Ia~V~~iL~~~~INIa~m~v~R~~~g~~al~~i~~D~~--~~~~~l~~l~~~~~v~~v~~ 597 (600)
|+|-+...|+||++++|++++...|+||.++.++..+..+-+-|.|-+... .-+.+.++|.++..|.+|.-
T Consensus 2 htlsv~v~N~~GVL~RisglF~rRg~NI~Sl~v~~te~~~iSR~tivv~~~~~~i~qi~kQL~KlidV~~V~d 74 (76)
T d2f1fa1 2 RILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTVGDEKVLEQIEKQLHKLVDVLRVSE 74 (76)
T ss_dssp EEEEEEEECCTTHHHHHHHHHHTTTCCCSEEEEEECSCSSEEEEEEEEESCHHHHHHHHHHHHHSTTEEEEEE
T ss_pred EEEEEEEECCCcHHHHHHHHHHhcCcceEEEEEcccCCCCeeEEEEEEECCHHHHHHHHHHHhCCCCEEEEEe
Confidence 577788899999999999999999999999999988777776665655433 23357788888888888763
|
| >d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.60 E-value=0.0001 Score=67.38 Aligned_cols=84 Identities=21% Similarity=0.303 Sum_probs=67.1
Q ss_pred cceeccCCEEEEEecCh-hHHHHHHHhhcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEecCCCccccccc
Q 007512 191 VGVSLVGKTLAVLGFGK-VGSEVARRAKGLGMHVIAHDPYAPADRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVL 269 (600)
Q Consensus 191 ~g~~l~gktiGIIGlG~-IG~~vA~~l~~~g~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Pl~~~t~~li 269 (600)
.+.+++||++.|||-+. +|+.+|..|...|+.|..++.+.. ++.+.+++||+|+.+++. .+++
T Consensus 33 ~~i~l~Gk~vvVIGrS~iVGrPLa~lL~~~gatVt~~~~~t~------------~l~~~~~~aDivi~a~G~----~~~i 96 (170)
T d1a4ia1 33 TGVPIAGRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSKTA------------HLDEEVNKGDILVVATGQ----PEMV 96 (170)
T ss_dssp TTCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCS------------SHHHHHTTCSEEEECCCC----TTCB
T ss_pred hCcccccceEEEEecCCccchHHHHHHHhccCceEEEecccc------------cHHHHHhhccchhhcccc----cccc
Confidence 47799999999999976 899999999999999999986542 356778899999999983 3456
Q ss_pred cHhHhccCCCceEEEEccCCcccc
Q 007512 270 NDETFGKMKKGVRIINVARGGVID 293 (600)
Q Consensus 270 ~~~~l~~mk~gailvNvarg~ivd 293 (600)
..+ ..|+|+++||++-..+.|
T Consensus 97 ~~~---~vk~g~iviDvgi~~~~~ 117 (170)
T d1a4ia1 97 KGE---WIKPGAIVIDCGINYVPD 117 (170)
T ss_dssp CGG---GSCTTCEEEECCCBC---
T ss_pred ccc---cccCCCeEeccCcccccc
Confidence 654 369999999998655433
|
| >d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Escherichia coli [TaxId: 562]
Probab=97.58 E-value=7.8e-05 Score=67.75 Aligned_cols=79 Identities=15% Similarity=0.274 Sum_probs=66.2
Q ss_pred cceeccCCEEEEEecCh-hHHHHHHHhhcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEecCCCccccccc
Q 007512 191 VGVSLVGKTLAVLGFGK-VGSEVARRAKGLGMHVIAHDPYAPADRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVL 269 (600)
Q Consensus 191 ~g~~l~gktiGIIGlG~-IG~~vA~~l~~~g~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Pl~~~t~~li 269 (600)
.+.++.||++.|||-+. +|+.+|..|...|+.|..++.+. .++.+.+++||+|+.++.. .+++
T Consensus 31 y~i~l~GK~v~VIGrS~~VG~Pla~lL~~~gatVt~~h~~t------------~~l~~~~~~ADivI~a~G~----p~~i 94 (166)
T d1b0aa1 31 YNIDTFGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFT------------KNLRHHVENADLLIVAVGK----PGFI 94 (166)
T ss_dssp TTCCCTTCEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSC------------SCHHHHHHHCSEEEECSCC----TTCB
T ss_pred cCcccccceEEEEeccccccHHHHHHHHHhhcccccccccc------------chhHHHHhhhhHhhhhccC----cccc
Confidence 46789999999999998 89999999999999999987653 1467788999999999983 3566
Q ss_pred cHhHhccCCCceEEEEccC
Q 007512 270 NDETFGKMKKGVRIINVAR 288 (600)
Q Consensus 270 ~~~~l~~mk~gailvNvar 288 (600)
..+. +|+|+++||+|-
T Consensus 95 ~~~~---vk~g~vvIDvGi 110 (166)
T d1b0aa1 95 PGDW---IKEGAIVIDVGI 110 (166)
T ss_dssp CTTT---SCTTCEEEECCC
T ss_pred cccc---cCCCcEEEecCc
Confidence 6553 589999999974
|
| >d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.57 E-value=4.2e-05 Score=70.05 Aligned_cols=96 Identities=20% Similarity=0.161 Sum_probs=67.3
Q ss_pred cccceeccCCEEEEEecChh-HHHHHHHhhcCCCEEEEECCCCChhHHHHcCC-------------cccCHHHHhccCCE
Q 007512 189 KYVGVSLVGKTLAVLGFGKV-GSEVARRAKGLGMHVIAHDPYAPADRARAIGV-------------DLVSFDEAIATADF 254 (600)
Q Consensus 189 ~~~g~~l~gktiGIIGlG~I-G~~vA~~l~~~g~~V~~~d~~~~~~~a~~~g~-------------~~~~l~ell~~aDv 254 (600)
...|.++.||++.|||-+.| |+.+|..|...|..|..++............+ ....+++...++|+
T Consensus 21 ~~~g~~l~GK~vvVIGrS~iVG~Pla~lL~~~gaTVt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~~~~~aDI 100 (171)
T d1edza1 21 LPEGNRLYGKKCIVINRSEIVGRPLAALLANDGATVYSVDVNNIQKFTRGESLKLNKHHVEDLGEYSEDLLKKCSLDSDV 100 (171)
T ss_dssp SCTTCTTTTCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSSEEEEEESCCCSSCCCCEEEEEEECCHHHHHHHHHHCSE
T ss_pred ccccCCCCCCEEEEECCccccHHHHHHHHHHCCCEEEEeccccccccccccceeeeeeccccccccchhHHhhccccCCE
Confidence 34678999999999998865 99999999999999998875421110000000 01126778889999
Q ss_pred EEEecCCCccccccccHhHhccCCCceEEEEccCCc
Q 007512 255 ISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGG 290 (600)
Q Consensus 255 V~l~~Pl~~~t~~li~~~~l~~mk~gailvNvarg~ 290 (600)
|+.++|... ..+..+ ..|+|+++||+|-..
T Consensus 101 vIsavG~p~---~~i~~d---~ik~GavvIDvGi~~ 130 (171)
T d1edza1 101 VITGVPSEN---YKFPTE---YIKEGAVCINFACTK 130 (171)
T ss_dssp EEECCCCTT---CCBCTT---TSCTTEEEEECSSSC
T ss_pred EEEccCCCc---cccChh---hcccCceEeeccccc
Confidence 999998332 114443 358999999998553
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=97.56 E-value=2.3e-05 Score=68.15 Aligned_cols=67 Identities=16% Similarity=0.310 Sum_probs=50.9
Q ss_pred CEEEEEecChhHHHHHHHhhcCCCEEEEECCCC-ChhHHHHcCCcc--------cCHHHH-hccCCEEEEecCCCcc
Q 007512 198 KTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYA-PADRARAIGVDL--------VSFDEA-IATADFISLHMPLTPA 264 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~-~~~~a~~~g~~~--------~~l~el-l~~aDvV~l~~Pl~~~ 264 (600)
|++.|+|+|.+|+.+|+.|...|.+|+++|.+. ..+.+.+.+... ..|+++ +.+||.+++++|...+
T Consensus 1 k~~iIiG~G~~G~~la~~L~~~g~~vvvid~d~~~~~~~~~~~~~~~~gd~~~~~~l~~a~i~~a~~vi~~~~~~~~ 77 (134)
T d2hmva1 1 KQFAVIGLGRFGGSIVKELHRMGHEVLAVDINEEKVNAYASYATHAVIANATEENELLSLGIRNFEYVIVAIGANIQ 77 (134)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCCEEEESCHHHHHHTTTTCSEEEECCTTCTTHHHHHTGGGCSEEEECCCSCHH
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEecCcHHHHHHHHHhCCcceeeecccchhhhccCCccccEEEEEcCchHH
Confidence 678999999999999999999999999999876 223344444421 124444 7899999999986544
|
| >d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Leucine dehydrogenase species: Bacillus sphaericus [TaxId: 1421]
Probab=97.44 E-value=0.00019 Score=68.74 Aligned_cols=108 Identities=22% Similarity=0.257 Sum_probs=81.3
Q ss_pred ceeccCCEEEEEecChhHHHHHHHhhcCCCEEEEECCCCC-h-hHHHHcCCcccCHHHHh-ccCCEEEEecCCCcccccc
Q 007512 192 GVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAP-A-DRARAIGVDLVSFDEAI-ATADFISLHMPLTPATSKV 268 (600)
Q Consensus 192 g~~l~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~-~-~~a~~~g~~~~~l~ell-~~aDvV~l~~Pl~~~t~~l 268 (600)
..+|.|+|+.|-|+|.+|+.+|+.|...|++|++.|.+.. . ......|....+.++++ ..||+++-|.= .+.
T Consensus 34 ~~~l~g~~v~IqG~GnVG~~~a~~L~~~Gakvv~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~cDIl~PcA~-----~~~ 108 (230)
T d1leha1 34 SDSLEGLAVSVQGLGNVAKALCKKLNTEGAKLVVTDVNKAAVSAAVAEEGADAVAPNAIYGVTCDIFAPCAL-----GAV 108 (230)
T ss_dssp SCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHCCEECCGGGTTTCCCSEEEECSC-----SCC
T ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEeecccHHHHHHHHHhcCCcccCCcccccccccEeccccc-----ccc
Confidence 3579999999999999999999999999999999998752 2 22334577777777766 46999998874 566
Q ss_pred ccHhHhccCCCceEEEEccCCccccHHHHHHhHhcCCc
Q 007512 269 LNDETFGKMKKGVRIINVARGGVIDEEALVRALDSGRV 306 (600)
Q Consensus 269 i~~~~l~~mk~gailvNvarg~ivde~aL~~aL~~g~i 306 (600)
|+++...+++- .+|+-.+-.++.+.++. +.|.+..|
T Consensus 109 I~~~~~~~l~a-k~Ive~ANn~~t~~ea~-~~L~~rGI 144 (230)
T d1leha1 109 LNDFTIPQLKA-KVIAGSADNQLKDPRHG-KYLHELGI 144 (230)
T ss_dssp BSTTHHHHCCC-SEECCSCSCCBSSHHHH-HHHHHHTC
T ss_pred cChHHhhccCc-cEEEecccCCCCCchHH-HHHHhhCc
Confidence 88888888874 36677777777766553 33555444
|
| >d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Trypanosome (Leishmania mexicana) [TaxId: 5665]
Probab=97.41 E-value=2.5e-05 Score=72.82 Aligned_cols=91 Identities=18% Similarity=0.195 Sum_probs=63.1
Q ss_pred CEEEEEecChhHHHHHHHhhcCCCEEEEECCCCCh-hHHHHc--------CCc-------ccCHHHHhccCCEEEEecCC
Q 007512 198 KTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPA-DRARAI--------GVD-------LVSFDEAIATADFISLHMPL 261 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~~-~~a~~~--------g~~-------~~~l~ell~~aDvV~l~~Pl 261 (600)
++|+|||.|..|.++|..|...|.+|..|+++... +...+. ++. ..++++++.+||+|++++|
T Consensus 8 ~KI~ViGaG~wGtAlA~~La~~g~~V~l~~r~~~~~~~i~~~~~n~~yl~~~~l~~~i~~t~~l~~a~~~ad~iiiavP- 86 (189)
T d1n1ea2 8 NKAVVFGSGAFGTALAMVLSKKCREVCVWHMNEEEVRLVNEKRENVLFLKGVQLASNITFTSDVEKAYNGAEIILFVIP- 86 (189)
T ss_dssp EEEEEECCSHHHHHHHHHHHTTEEEEEEECSCHHHHHHHHHHTBCTTTSTTCBCCTTEEEESCHHHHHTTCSCEEECSC-
T ss_pred ceEEEECCCHHHHHHHHHHHHcCCeEEEEEecHHHHHHHhhcccccccccccccccccccchhhhhccCCCCEEEEcCc-
Confidence 57999999999999999999889999999976421 111111 121 1268999999999999999
Q ss_pred CccccccccHhH----hccCCCceEEEEccCC
Q 007512 262 TPATSKVLNDET----FGKMKKGVRIINVARG 289 (600)
Q Consensus 262 ~~~t~~li~~~~----l~~mk~gailvNvarg 289 (600)
....+.++.+-. ....+++..+++++.|
T Consensus 87 s~~~~~~~~~~~~~~~~~~~~~~~~ii~~tKG 118 (189)
T d1n1ea2 87 TQFLRGFFEKSGGNLIAYAKEKQVPVLVCTKG 118 (189)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHTCCEEECCCS
T ss_pred HHHHHHHHHHHHhhhhhhhccCCcEEEEEECC
Confidence 433444432210 0123567789999876
|
| >d1y7pa2 d.58.18.12 (A:2-78) Hypothetical protein AF1403, N-terminal domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: ACT-like family: AF1403 N-terminal domain-like domain: Hypothetical protein AF1403, N-terminal domain species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=97.40 E-value=0.00022 Score=56.48 Aligned_cols=70 Identities=13% Similarity=0.120 Sum_probs=49.4
Q ss_pred EEEEEecCCCCChhhHHhhhhcCCccccceEeeeecCCC-cEEEEEEeC--CCCcHHHHHHHhcCCCcceEEE
Q 007512 528 IILCRQVDQPGMIGTVGSILGSENVNVSFMSVGRVAPRK-HAVMAIGVD--EQPRKETLKKIGDVPAIEEFVF 597 (600)
Q Consensus 528 ~Liv~~~D~pG~Ia~V~~iL~~~~INIa~m~v~R~~~g~-~al~~i~~D--~~~~~~~l~~l~~~~~v~~v~~ 597 (600)
.|-+...|+||+++.|+++++++++||.+++..-...|. ...+.++++ +.--+.++++|+++|+|.+|..
T Consensus 3 ~i~i~~~Dr~GlL~di~~~ia~~~~NI~~i~~~~~~~g~~~~~~~i~v~~~~~~l~~ll~kL~~l~~V~~Ver 75 (77)
T d1y7pa2 3 GLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIKHGEHEGKALIYFEIEGGDFEKILERVKTFDYIIEIEE 75 (77)
T ss_dssp EEEEEEECCTTHHHHHHHHCC----CEEEEEEEECCSSTTTTEEEEEEEECSSCHHHHHHHHHTCTTEEEEEE
T ss_pred eEEEEEecCCChHHHHHHHHHHcCCCeEEEEeeccCCCeEEEEEEEEEEcCcccHHHHHHHHHcCCCeeEEEe
Confidence 355678899999999999999999999999875433332 245555543 3235689999999999999864
|
| >d2f06a1 d.58.18.11 (A:71-141) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: ACT-like family: BT0572-like domain: Hypothetical protein BT0572 species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=97.23 E-value=0.00024 Score=55.40 Aligned_cols=56 Identities=16% Similarity=0.200 Sum_probs=46.5
Q ss_pred EEEEecCCCCChhhHHhhhhcCCccccceEeeeecCCCcEEEEEEeCCCCcHHHHHHHhc
Q 007512 529 ILCRQVDQPGMIGTVGSILGSENVNVSFMSVGRVAPRKHAVMAIGVDEQPRKETLKKIGD 588 (600)
Q Consensus 529 Liv~~~D~pG~Ia~V~~iL~~~~INIa~m~v~R~~~g~~al~~i~~D~~~~~~~l~~l~~ 588 (600)
+-+.-+|+||.++++.+.|+++||||.+|..+.. ++.+++++.+|++ +.+.+.|++
T Consensus 2 iaV~v~d~pG~L~~v~~~L~~~~InI~~~y~~~~--~~~~~~vl~vdd~--~~a~~~L~~ 57 (71)
T d2f06a1 2 VGISCPNVPGALAKVLGFLSAEGVFIEYMYSFAN--NNVANVVIRPSNM--DKCIEVLKE 57 (71)
T ss_dssp EEEEEESSTTHHHHHHHHHHHTTCCEEEEEEEEE--TTEEEEEEEESCH--HHHHHHHHH
T ss_pred EEEEecCCccHHHHHHHHHHHCCCCEEEEEEEcC--CCcEEEEEEECCH--HHHHHHHHH
Confidence 4467899999999999999999999999999854 4789999999864 456666654
|
| >d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Virulence factor MviM species: Escherichia coli [TaxId: 562]
Probab=97.21 E-value=0.00031 Score=63.03 Aligned_cols=65 Identities=12% Similarity=0.177 Sum_probs=49.7
Q ss_pred CEEEEEecChhHHH-HHHHhhcC-CCEEEE-ECCCCC--hhHHHHcCCccc-CHHHHhccCCEEEEecCCC
Q 007512 198 KTLAVLGFGKVGSE-VARRAKGL-GMHVIA-HDPYAP--ADRARAIGVDLV-SFDEAIATADFISLHMPLT 262 (600)
Q Consensus 198 ktiGIIGlG~IG~~-vA~~l~~~-g~~V~~-~d~~~~--~~~a~~~g~~~~-~l~ell~~aDvV~l~~Pl~ 262 (600)
.+|||||+|.+|+. ....++.. ++++++ +|+... .+.+...++... ++++++++.|+|++|+|..
T Consensus 2 iri~iIG~G~~g~~~~~~~l~~~~~~~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~l~~~~D~V~I~tp~~ 72 (164)
T d1tlta1 2 LRIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICESWRIPYADSLSSLAASCDAVFVHSSTA 72 (164)
T ss_dssp EEEEEECCSTHHHHTHHHHHHSCSSEEEEEEECSSCTTHHHHHHHHTCCBCSSHHHHHTTCSEEEECSCTT
T ss_pred CEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEEechhHhhhhhhhcccccccccchhhhhhcccccccccch
Confidence 37999999999986 56677765 788775 788763 234556677654 7889999999999999943
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.15 E-value=0.00027 Score=63.75 Aligned_cols=89 Identities=21% Similarity=0.279 Sum_probs=64.8
Q ss_pred cCCEEEEEecChhHHHHHHHhhcCCCEEEEECCCC-ChhHHHHcCCccc-------C-HHHHhccCCEEEEecCCCcccc
Q 007512 196 VGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYA-PADRARAIGVDLV-------S-FDEAIATADFISLHMPLTPATS 266 (600)
Q Consensus 196 ~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~-~~~~a~~~g~~~~-------~-l~ell~~aDvV~l~~Pl~~~t~ 266 (600)
.|.+|.|+|.|.+|...++.++.+|++|++.|++. ..+.++++|...+ + .+......|+++.|+.....
T Consensus 27 ~g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~k~~~a~~lGa~~~i~~~~~~~~~~~~~~~~d~vi~~~~~~~~-- 104 (168)
T d1piwa2 27 PGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMKMGADHYIATLEEGDWGEKYFDTFDLIVVCASSLTD-- 104 (168)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHHTCSEEEEGGGTSCHHHHSCSCEEEEEECCSCSTT--
T ss_pred CCCEEEEECCCCcchhHHHHhhhccccccccccchhHHHHhhccCCcEEeeccchHHHHHhhhcccceEEEEecCCcc--
Confidence 48899999999999999999999999999999877 5678888887421 1 22344557888887663321
Q ss_pred ccccHhHhccCCCceEEEEcc
Q 007512 267 KVLNDETFGKMKKGVRIINVA 287 (600)
Q Consensus 267 ~li~~~~l~~mk~gailvNva 287 (600)
..-...+..++++..++.+|
T Consensus 105 -~~~~~~~~~l~~~G~iv~~G 124 (168)
T d1piwa2 105 -IDFNIMPKAMKVGGRIVSIS 124 (168)
T ss_dssp -CCTTTGGGGEEEEEEEEECC
T ss_pred -chHHHHHHHhhccceEEEec
Confidence 11133566678888888775
|
| >d2f06a2 d.58.18.11 (A:1-70) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: ACT-like family: BT0572-like domain: Hypothetical protein BT0572 species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=97.01 E-value=0.00084 Score=52.00 Aligned_cols=59 Identities=17% Similarity=0.252 Sum_probs=48.3
Q ss_pred EEEEEecCCCCChhhHHhhhhcCCccccceEeeeecCCCcEEEEEEeCCCCcHHHHHHHhcCC
Q 007512 528 IILCRQVDQPGMIGTVGSILGSENVNVSFMSVGRVAPRKHAVMAIGVDEQPRKETLKKIGDVP 590 (600)
Q Consensus 528 ~Liv~~~D~pG~Ia~V~~iL~~~~INIa~m~v~R~~~g~~al~~i~~D~~~~~~~l~~l~~~~ 590 (600)
.|-+.-.|+||.+++|+++|+++||||..+.+.. ..+.++.++-+|+ |+++.+.|++.-
T Consensus 5 QisV~~eNkpG~L~~v~~~~~~~~inI~sl~v~~--t~~~~i~Riiv~~--~e~a~~~L~~~g 63 (70)
T d2f06a2 5 QLSIFLENKSGRLTEVTEVLAKENINLSALCIAE--NADFGILRGIVSD--PDKAYKALKDNH 63 (70)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHTTCCEEEEEEEE--CSSCEEEEEEESC--HHHHHHHHHHTT
T ss_pred EEEEEEeCCCcHHHHHHHHHHHCCCCEEEEEEee--cCCCCEEEEEECC--hHHHHHHHHHCC
Confidence 4567788999999999999999999999999975 4466888888875 467777777643
|
| >d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Saccharopine reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=96.99 E-value=0.0004 Score=61.99 Aligned_cols=87 Identities=16% Similarity=0.218 Sum_probs=58.5
Q ss_pred cCCEEEEEecChhHHHHHHHhhcCCCEEEEECCCCChhHHHHcCCc-----------ccCHHHHhccCCEEEEecCCCcc
Q 007512 196 VGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPADRARAIGVD-----------LVSFDEAIATADFISLHMPLTPA 264 (600)
Q Consensus 196 ~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~~~~a~~~g~~-----------~~~l~ell~~aDvV~l~~Pl~~~ 264 (600)
.+|+|.|||.|.||+.+|+.|...|.+|+++|+............. ...+++.+...|+++.++|....
T Consensus 1 ~~K~IliiGaG~~G~~~a~~L~~~g~~V~v~dr~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~~~ 80 (182)
T d1e5qa1 1 ATKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLESAKKLSAGVQHSTPISLDVNDDAALDAEVAKHDLVISLIPYTFH 80 (182)
T ss_dssp CCCEEEEECCSTTHHHHHHHHHTTTCEEEEEESCHHHHHHHHTTCTTEEEEECCTTCHHHHHHHHTTSSEEEECSCGGGH
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEECChHHHHHHHhcccccccccccccchhhhHhhhhccceeEeeccchhh
Confidence 3789999999999999999999999999999987633222222211 11356678889999888874321
Q ss_pred ccccccHhHhccCCCceEEEEcc
Q 007512 265 TSKVLNDETFGKMKKGVRIINVA 287 (600)
Q Consensus 265 t~~li~~~~l~~mk~gailvNva 287 (600)
. ......++.++.+++.+
T Consensus 81 -~----~~~~~~~~~~~~~~~~~ 98 (182)
T d1e5qa1 81 -A----TVIKSAIRQKKHVVTTS 98 (182)
T ss_dssp -H----HHHHHHHHHTCEEECSS
T ss_pred -h----HHHHHHHhhccceeecc
Confidence 1 11122244566777765
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.99 E-value=0.00067 Score=61.13 Aligned_cols=88 Identities=25% Similarity=0.301 Sum_probs=65.5
Q ss_pred cCCEEEEEecChhHHHHHHHhhcCCC-EEEEECCCC-ChhHHHHcCCccc------CHHHHh--------ccCCEEEEec
Q 007512 196 VGKTLAVLGFGKVGSEVARRAKGLGM-HVIAHDPYA-PADRARAIGVDLV------SFDEAI--------ATADFISLHM 259 (600)
Q Consensus 196 ~gktiGIIGlG~IG~~vA~~l~~~g~-~V~~~d~~~-~~~~a~~~g~~~~------~l~ell--------~~aDvV~l~~ 259 (600)
.|.+|.|+|.|.||...++.++.+|. +|++.|++. ..+.+++.|...+ +..+.. ..+|+|+-|+
T Consensus 26 ~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~Ga~~~~~~~~~~~~~~~~~~~~~~g~g~Dvvid~~ 105 (171)
T d1pl8a2 26 LGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQISKESPQEIARKVEGQLGCKPEVTIECT 105 (171)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHHTSCCSEEEECS
T ss_pred CCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHhCCcccccccccccccccccccccCCCCceEEEecc
Confidence 36799999999999999999999998 899999887 5577888887431 333222 2479998888
Q ss_pred CCCccccccccHhHhccCCCceEEEEccC
Q 007512 260 PLTPATSKVLNDETFGKMKKGVRIINVAR 288 (600)
Q Consensus 260 Pl~~~t~~li~~~~l~~mk~gailvNvar 288 (600)
+. +.+ -+..+..++++..++-+|-
T Consensus 106 G~-~~~----~~~a~~~~~~gG~iv~~G~ 129 (171)
T d1pl8a2 106 GA-EAS----IQAGIYATRSGGTLVLVGL 129 (171)
T ss_dssp CC-HHH----HHHHHHHSCTTCEEEECSC
T ss_pred CC-chh----HHHHHHHhcCCCEEEEEec
Confidence 73 222 2445667888888888874
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=96.91 E-value=0.00052 Score=62.56 Aligned_cols=45 Identities=31% Similarity=0.364 Sum_probs=38.4
Q ss_pred cCCEEEEEecChhHHHHHHHhhcCCC-EEEEECCCC-ChhHHHHcCC
Q 007512 196 VGKTLAVLGFGKVGSEVARRAKGLGM-HVIAHDPYA-PADRARAIGV 240 (600)
Q Consensus 196 ~gktiGIIGlG~IG~~vA~~l~~~g~-~V~~~d~~~-~~~~a~~~g~ 240 (600)
.|.+|.|+|.|.||...++.++.+|+ +|++.|++. ..+.+++.|.
T Consensus 28 ~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~lGa 74 (182)
T d1vj0a2 28 AGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGA 74 (182)
T ss_dssp BTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHTTC
T ss_pred CCCEEEEECCCccchhheecccccccccccccccccccccccccccc
Confidence 58899999999999999999999997 899999876 4456666664
|
| >d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Escherichia coli [TaxId: 562]
Probab=96.89 E-value=0.00091 Score=60.45 Aligned_cols=97 Identities=14% Similarity=0.118 Sum_probs=65.0
Q ss_pred ceeccCCEEEEEecChhHHHHHHHhhcCCCEEEEECCCCChhH--HHHc---C-CcccCHHHH-hccCCEEEEecCCCcc
Q 007512 192 GVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPADR--ARAI---G-VDLVSFDEA-IATADFISLHMPLTPA 264 (600)
Q Consensus 192 g~~l~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~~~~--a~~~---g-~~~~~l~el-l~~aDvV~l~~Pl~~~ 264 (600)
+..+.||++.|+|.|-.+++++..|...|.+|..+++...... +... + +...++++. ..++|+|+.|+|..-.
T Consensus 13 ~~~~~~k~vlIlGaGGaarai~~al~~~g~~i~I~nRt~~ka~~l~~~~~~~~~~~~~~~~~~~~~~~dliIN~Tp~G~~ 92 (170)
T d1nyta1 13 SFIRPGLRILLIGAGGASRGVLLPLLSLDCAVTITNRTVSRAEELAKLFAHTGSIQALSMDELEGHEFDLIINATSSGIS 92 (170)
T ss_dssp TCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHTGGGSSEEECCSGGGTTCCCSEEEECCSCGGG
T ss_pred CCCCCCCEEEEECCcHHHHHHHHHhcccceEEEeccchHHHHHHHHHHHhhcccccccccccccccccceeecccccCcc
Confidence 5678899999999999999999999999999999998753211 1111 1 223344433 4679999999996542
Q ss_pred ccccccHhHhccCCCceEEEEccCCc
Q 007512 265 TSKVLNDETFGKMKKGVRIINVARGG 290 (600)
Q Consensus 265 t~~li~~~~l~~mk~gailvNvarg~ 290 (600)
.. .....+..++++.+++|+--.+
T Consensus 93 ~~--~~~~~~~~~~~~~~v~D~vY~P 116 (170)
T d1nyta1 93 GD--IPAIPSSLIHPGIYCYDMFYQK 116 (170)
T ss_dssp TC--CCCCCGGGCCTTCEEEESCCCS
T ss_pred cC--CCCCcHHHhccCcEEEEeecCC
Confidence 11 1122234466777777765443
|
| >d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Diaminopimelic acid dehydrogenase (DAPDH) species: Corynebacterium glutamicum [TaxId: 1718]
Probab=96.89 E-value=0.00044 Score=62.68 Aligned_cols=83 Identities=18% Similarity=0.246 Sum_probs=56.2
Q ss_pred CEEEEEecChhHHHHHHHhhcC-CCEEEE-ECCCCChhHHHHcCC-cccCHHHHhccCCEEEEecCCCccccccccHhHh
Q 007512 198 KTLAVLGFGKVGSEVARRAKGL-GMHVIA-HDPYAPADRARAIGV-DLVSFDEAIATADFISLHMPLTPATSKVLNDETF 274 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~-g~~V~~-~d~~~~~~~a~~~g~-~~~~l~ell~~aDvV~l~~Pl~~~t~~li~~~~l 274 (600)
.++||||+|.||+.+++.++.. ++++++ +|++... ....++ ...++++++.+.|+|++|+|.... -+-..
T Consensus 4 irvgiiG~G~ig~~~~~~l~~~~~~elvav~~~~~~~--~~~~~~~~~~~~~~~~~~~D~Vvi~tp~~~h-----~~~a~ 76 (170)
T d1f06a1 4 IRVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRRATL--DTKTPVFDVADVDKHADDVDVLFLCMGSATD-----IPEQA 76 (170)
T ss_dssp EEEEEECCSHHHHHHHHHHTTCSSEEEEEEEESSSCC--SSSSCEEEGGGGGGTTTTCSEEEECSCTTTH-----HHHHH
T ss_pred ceEEEECChHHHHHHHHHHHhCCCcEEEEEEeccccc--ccccccccchhhhhhccccceEEEeCCCccc-----HHHHH
Confidence 4799999999999999999976 788876 5655421 111222 234677888999999999995531 12223
Q ss_pred ccCCCceEEEEcc
Q 007512 275 GKMKKGVRIINVA 287 (600)
Q Consensus 275 ~~mk~gailvNva 287 (600)
..++.|.-+|.+.
T Consensus 77 ~aL~aG~~vv~~~ 89 (170)
T d1f06a1 77 PKFAQFACTVDTY 89 (170)
T ss_dssp HHHTTTSEEECCC
T ss_pred HHHHCCCcEEEec
Confidence 3366776666554
|
| >d1zpva1 d.58.18.7 (A:1-83) UPF0237 protein SP0238 {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: ACT-like family: SP0238-like domain: UPF0237 protein SP0238 species: Streptococcus pneumoniae [TaxId: 1313]
Probab=96.84 E-value=0.0009 Score=53.32 Aligned_cols=60 Identities=15% Similarity=0.188 Sum_probs=42.8
Q ss_pred EEEEEecCCCCChhhHHhhhhcCCccccceEeeeecCCCcEE--EEEEeCCCCc-HHHHHHHhcC
Q 007512 528 IILCRQVDQPGMIGTVGSILGSENVNVSFMSVGRVAPRKHAV--MAIGVDEQPR-KETLKKIGDV 589 (600)
Q Consensus 528 ~Liv~~~D~pG~Ia~V~~iL~~~~INIa~m~v~R~~~g~~al--~~i~~D~~~~-~~~l~~l~~~ 589 (600)
.+-+.-+|+||+++.|++.|+++|+||.+++-... ++.-. +.++++...+ +++.++|..+
T Consensus 4 vitv~g~DrpGiVa~vt~~l~~~g~NI~d~~q~~~--~~~f~~~~~v~~~~~~~~~~l~~~l~~l 66 (83)
T d1zpva1 4 IITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVL--DEYFTMMAVVSSDEKQDFTYLRNEFEAF 66 (83)
T ss_dssp EEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEEE--TTEEEEEEEEEESSCCCHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHCCCeEEEEEeEEe--CCEEEEEEEEEEecCCCHHHHHHHHHHH
Confidence 45566899999999999999999999999987643 34544 4555555554 3455555543
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=96.82 E-value=0.0011 Score=59.47 Aligned_cols=88 Identities=18% Similarity=0.205 Sum_probs=58.4
Q ss_pred cCCEEEEEecChhHHHHHHHhhcCCCEEEEECCCC-ChhHHHHcCCccc--------CHHH---Hh-----ccCCEEEEe
Q 007512 196 VGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYA-PADRARAIGVDLV--------SFDE---AI-----ATADFISLH 258 (600)
Q Consensus 196 ~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~-~~~~a~~~g~~~~--------~l~e---ll-----~~aDvV~l~ 258 (600)
.|.++.|+|.|.||...++.++.+|.+|+++|++. ..+.++++|.... +.++ .+ ..+|+|+-|
T Consensus 26 ~g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~~r~~~a~~~ga~~~~~~~~~~~~~~~~~~~~~~~~g~g~D~vid~ 105 (170)
T d1e3ja2 26 LGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAIGDLPNVTIDC 105 (170)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCSEEEECCTTTSCHHHHHHHHHHHSSSCCSEEEEC
T ss_pred CCCEEEEEcccccchhhHhhHhhhcccccccchHHHHHHHHHHcCCcEEEeccccccccchhhhhhhcccccCCceeeec
Confidence 47799999999999999999999999999999886 4566777775321 1111 11 225777666
Q ss_pred cCCCccccccccHhHhccCCCceEEEEccC
Q 007512 259 MPLTPATSKVLNDETFGKMKKGVRIINVAR 288 (600)
Q Consensus 259 ~Pl~~~t~~li~~~~l~~mk~gailvNvar 288 (600)
+. .+.+ -...+..++++..++.++-
T Consensus 106 ~g-~~~~----~~~a~~~~~~~G~iv~~G~ 130 (170)
T d1e3ja2 106 SG-NEKC----ITIGINITRTGGTLMLVGM 130 (170)
T ss_dssp SC-CHHH----HHHHHHHSCTTCEEEECSC
T ss_pred CC-ChHH----HHHHHHHHhcCCceEEEec
Confidence 65 2211 1233455666666666653
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=96.77 E-value=0.0011 Score=57.28 Aligned_cols=84 Identities=17% Similarity=0.209 Sum_probs=54.7
Q ss_pred CEEEEEecChhHHHHHHHhhcCCCEEEEECCCCC-hhHHH-HcCCcc-----cC---HHHH-hccCCEEEEecCCCcccc
Q 007512 198 KTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAP-ADRAR-AIGVDL-----VS---FDEA-IATADFISLHMPLTPATS 266 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~-~~~a~-~~g~~~-----~~---l~el-l~~aDvV~l~~Pl~~~t~ 266 (600)
++|.|+|+|.+|+.+|+.|...|.+|++.|.++. .+... +.+... .+ |+++ +.++|.++..++..+ .
T Consensus 1 M~IvI~G~G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~~~~~vi~Gd~~~~~~l~~~~i~~a~~vv~~t~~d~--~ 78 (132)
T d1lssa_ 1 MYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEIDALVINGDCTKIKTLEDAGIEDADMYIAVTGKEE--V 78 (132)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCSSEEEESCTTSHHHHHHTTTTTCSEEEECCSCHH--H
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCcceecCChhhhhhhhhhhhhhhccCcccchhhhhhcChhhhhhhcccCCcHH--H
Confidence 4799999999999999999999999999998763 22232 335432 12 3333 678998888877432 2
Q ss_pred ccccHhHhccCCCceEE
Q 007512 267 KVLNDETFGKMKKGVRI 283 (600)
Q Consensus 267 ~li~~~~l~~mk~gail 283 (600)
+++-......+.+..++
T Consensus 79 N~~~~~~~k~~~~~~iI 95 (132)
T d1lssa_ 79 NLMSSLLAKSYGINKTI 95 (132)
T ss_dssp HHHHHHHHHHTTCCCEE
T ss_pred HHHHHHHHHHcCCceEE
Confidence 22323333345444443
|
| >d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Putative shikimate dehydrogenase YdiB species: Escherichia coli [TaxId: 562]
Probab=96.76 E-value=0.0018 Score=59.02 Aligned_cols=94 Identities=21% Similarity=0.379 Sum_probs=62.9
Q ss_pred ceeccCCEEEEEecChhHHHHHHHhhcCCC-EEEEECCCCC-hhHHH----Hc----CC-----cc---cCHHHHhccCC
Q 007512 192 GVSLVGKTLAVLGFGKVGSEVARRAKGLGM-HVIAHDPYAP-ADRAR----AI----GV-----DL---VSFDEAIATAD 253 (600)
Q Consensus 192 g~~l~gktiGIIGlG~IG~~vA~~l~~~g~-~V~~~d~~~~-~~~a~----~~----g~-----~~---~~l~ell~~aD 253 (600)
+.++.||++.|+|.|-.|++++..|...|. ++..++++.. .+++. +. .. .+ .++.+.+.++|
T Consensus 13 ~~~l~~k~vlIlGaGGaarai~~al~~~g~~~i~i~nR~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 92 (182)
T d1vi2a1 13 GFDIKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLADQQAFAEALASAD 92 (182)
T ss_dssp TCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHTCS
T ss_pred CCCcCCCEEEEECCcHHHHHHHHHHhhcCCceEeeeccchHHHHHHHHHHHHHHhhcCcceEeeecccccchhhhhcccc
Confidence 568999999999999999999999998887 7888888763 33222 11 11 11 12456678999
Q ss_pred EEEEecCCCccc---cccccHhHhccCCCceEEEEcc
Q 007512 254 FISLHMPLTPAT---SKVLNDETFGKMKKGVRIINVA 287 (600)
Q Consensus 254 vV~l~~Pl~~~t---~~li~~~~l~~mk~gailvNva 287 (600)
+|+.|+|..... ..++. .+..++++.+++|+.
T Consensus 93 iiIN~Tp~G~~~~~~~~~~~--~~~~~~~~~~v~Di~ 127 (182)
T d1vi2a1 93 ILTNGTKVGMKPLENESLVN--DISLLHPGLLVTECV 127 (182)
T ss_dssp EEEECSSTTSTTSCSCCSCC--CGGGSCTTCEEEECC
T ss_pred eeccccCCccccccchhhhh--HHHhhhcchhhHHhh
Confidence 999999965321 11111 133466666666665
|
| >d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=96.75 E-value=0.0017 Score=56.89 Aligned_cols=90 Identities=14% Similarity=0.193 Sum_probs=57.0
Q ss_pred CEEEEEecChhHHHHHHHhh--cCCCEEEEECCCCChhHHHHcC------C----c-ccCHHHHhccCCEEEEecCCCcc
Q 007512 198 KTLAVLGFGKVGSEVARRAK--GLGMHVIAHDPYAPADRARAIG------V----D-LVSFDEAIATADFISLHMPLTPA 264 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~--~~g~~V~~~d~~~~~~~a~~~g------~----~-~~~l~ell~~aDvV~l~~Pl~~~ 264 (600)
.+|+|||.|.+|..+|-.+. .+.-++..||.......+..+. + . ..+..+.+++||+|+++.-.. .
T Consensus 1 mKI~IIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~~~Dl~~~~~~~~~~~~~~~~~~~~~~adivvitag~~-~ 79 (140)
T d1a5za1 1 MKIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYAGDYADLKGSDVVIVAAGVP-Q 79 (140)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEECCGGGGTTCSEEEECCCCC-C
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEecccccccchhccccccccccccccccCCcHHHhcCCCEEEEecccc-c
Confidence 48999999999999999876 4446999999765322221111 1 1 123345689999999987422 1
Q ss_pred ccccccH--------------hHhccCCCceEEEEccC
Q 007512 265 TSKVLND--------------ETFGKMKKGVRIINVAR 288 (600)
Q Consensus 265 t~~li~~--------------~~l~~mk~gailvNvar 288 (600)
..++-.. +.+.+..|++++++++-
T Consensus 80 ~~g~~r~dl~~~N~~I~~~i~~~i~~~~p~aivivvtN 117 (140)
T d1a5za1 80 KPGETRLQLLGRNARVMKEIARNVSKYAPDSIVIVVTN 117 (140)
T ss_dssp CSSCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSS
T ss_pred CCCcchhhhhccccchHHHHHHHHHhcCCCcEEEEeCC
Confidence 2222111 22344578999999863
|
| >d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Acetaldehyde dehydrogenase (acylating) species: Pseudomonas sp. [TaxId: 306]
Probab=96.74 E-value=0.0012 Score=59.14 Aligned_cols=88 Identities=23% Similarity=0.369 Sum_probs=60.2
Q ss_pred CEEEEEecChhHHH-HHHHhhcC-CCEEEE-ECCCC-C--hhHHHHcCCccc--CHHHHh-----ccCCEEEEecCCCcc
Q 007512 198 KTLAVLGFGKVGSE-VARRAKGL-GMHVIA-HDPYA-P--ADRARAIGVDLV--SFDEAI-----ATADFISLHMPLTPA 264 (600)
Q Consensus 198 ktiGIIGlG~IG~~-vA~~l~~~-g~~V~~-~d~~~-~--~~~a~~~g~~~~--~l~ell-----~~aDvV~l~~Pl~~~ 264 (600)
-++||||.|.||+. +.+.++.+ ..++.+ .|++. . ...++..|+... ++++++ .+.|+|++++|-...
T Consensus 5 irvaIIGaG~ig~~~~~~~l~~~~~~el~avas~~~~~~~~~~a~~~~i~~~~~~~d~l~~~~~~~~iDiVf~ATpag~h 84 (157)
T d1nvmb1 5 LKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARAQRMGVTTTYAGVEGLIKLPEFADIDFVFDATSASAH 84 (157)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHHHHHHHTTCCEESSHHHHHHHSGGGGGEEEEEECSCHHHH
T ss_pred cEEEEEcCcHHHHHHHHHHHhhCCcceEEEEEecchhccchhhhhhcCCcccccceeeeeecccccccCEEEEcCCchhH
Confidence 37999999999996 66788766 457766 46654 2 245777887543 345443 468999999993322
Q ss_pred ccccccHhHhccCCCceEEEEccC
Q 007512 265 TSKVLNDETFGKMKKGVRIINVAR 288 (600)
Q Consensus 265 t~~li~~~~l~~mk~gailvNvar 288 (600)
.-.+..+...+.|+.+||-+.
T Consensus 85 ---~~~~~~~~aa~~G~~VID~s~ 105 (157)
T d1nvmb1 85 ---VQNEALLRQAKPGIRLIDLTP 105 (157)
T ss_dssp ---HHHHHHHHHHCTTCEEEECST
T ss_pred ---HHhHHHHHHHHcCCEEEEccc
Confidence 222334555799999999875
|
| >d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chlorobium vibrioforme [TaxId: 1098]
Probab=96.74 E-value=0.0015 Score=57.27 Aligned_cols=91 Identities=22% Similarity=0.217 Sum_probs=58.6
Q ss_pred CEEEEEecChhHHHHHHHhhcCC--CEEEEECCCCChhHHHHc---------C--Cc--ccCHHHHhccCCEEEEecC--
Q 007512 198 KTLAVLGFGKVGSEVARRAKGLG--MHVIAHDPYAPADRARAI---------G--VD--LVSFDEAIATADFISLHMP-- 260 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~g--~~V~~~d~~~~~~~a~~~---------g--~~--~~~l~ell~~aDvV~l~~P-- 260 (600)
++|+|||.|.+|.++|..+...| -++..||.......+... . .. ..+..+.+++||+|+++.-
T Consensus 1 mKI~IIGaG~VG~~la~~l~~~~l~~el~L~Di~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~dadvvvitag~~ 80 (142)
T d1guza1 1 MKITVIGAGNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGSNDYADTANSDIVIITAGLP 80 (142)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEESCGGGGTTCSEEEECCSCC
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCceEEEeccccccchhhhhhhhcccchhcccceEEecCCHHHhcCCeEEEEEEecC
Confidence 47999999999999999998665 499999987644322211 1 11 1244577899999999963
Q ss_pred CCc-ccccc-c--cH-------hHhccCCCceEEEEccC
Q 007512 261 LTP-ATSKV-L--ND-------ETFGKMKKGVRIINVAR 288 (600)
Q Consensus 261 l~~-~t~~l-i--~~-------~~l~~mk~gailvNvar 288 (600)
..+ +++.- + |. +.+.+..|++++++++.
T Consensus 81 ~~~g~~r~~l~~~N~~i~~~i~~~i~~~~p~aivivvtN 119 (142)
T d1guza1 81 RKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVVSN 119 (142)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHHHHHHHCSSCEEEECCS
T ss_pred CCCCCchHHHHHHHHHHHHHHHHHhhccCCCeEEEEecC
Confidence 333 12211 1 11 12333458899999854
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=96.74 E-value=0.001 Score=59.81 Aligned_cols=87 Identities=25% Similarity=0.377 Sum_probs=61.2
Q ss_pred cCCEEEEEecChhHHHHHHHhhcCCCEEEEECCCC-ChhHHHHcCCccc----C---HHHHhccCCEEEEecCCCccccc
Q 007512 196 VGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYA-PADRARAIGVDLV----S---FDEAIATADFISLHMPLTPATSK 267 (600)
Q Consensus 196 ~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~-~~~~a~~~g~~~~----~---l~ell~~aDvV~l~~Pl~~~t~~ 267 (600)
.|.+|.|+|.|.||...++.++.+|+++++.|... ..+.++++|...+ + ..+.....|+++-++.... +
T Consensus 30 ~G~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~~~~~~a~~lGad~~i~~~~~~~~~~~~~~~D~vid~~g~~~-~-- 106 (168)
T d1uufa2 30 PGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKALGADEVVNSRNADEMAAHLKSFDFILNTVAAPH-N-- 106 (168)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTCSEEEETTCHHHHHTTTTCEEEEEECCSSCC-C--
T ss_pred CCCEEEEeccchHHHHHHHHhhcccccchhhccchhHHHHHhccCCcEEEECchhhHHHHhcCCCceeeeeeecch-h--
Confidence 38899999999999999999999999999998776 4567788887422 1 1223345777777776322 1
Q ss_pred cccHhHhccCCCceEEEEcc
Q 007512 268 VLNDETFGKMKKGVRIINVA 287 (600)
Q Consensus 268 li~~~~l~~mk~gailvNva 287 (600)
-...+..++++..++.++
T Consensus 107 --~~~~~~~l~~~G~iv~~G 124 (168)
T d1uufa2 107 --LDDFTTLLKRDGTMTLVG 124 (168)
T ss_dssp --HHHHHTTEEEEEEEEECC
T ss_pred --HHHHHHHHhcCCEEEEec
Confidence 133455667777777665
|
| >d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Putative oxidoreductase VCA1048 species: Vibrio cholerae [TaxId: 666]
Probab=96.63 E-value=0.0013 Score=59.06 Aligned_cols=65 Identities=11% Similarity=0.228 Sum_probs=47.5
Q ss_pred CEEEEEecChhHHH-HHHHhhcC-CCEEEEECCCCC--hhHHHHcCCc--ccCHHHHhc-cCCEEEEecCCC
Q 007512 198 KTLAVLGFGKVGSE-VARRAKGL-GMHVIAHDPYAP--ADRARAIGVD--LVSFDEAIA-TADFISLHMPLT 262 (600)
Q Consensus 198 ktiGIIGlG~IG~~-vA~~l~~~-g~~V~~~d~~~~--~~~a~~~g~~--~~~l~ell~-~aDvV~l~~Pl~ 262 (600)
.++||||+|.+|+. ....++.+ +.++.++|++.. ...+...++. +.+.++++. +.|+|++|+|..
T Consensus 2 irvgiiG~G~~~~~~~~~~l~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ll~~~iD~V~I~tp~~ 73 (167)
T d1xeaa1 2 LKIAMIGLGDIAQKAYLPVLAQWPDIELVLCTRNPKVLGTLATRYRVSATCTDYRDVLQYGVDAVMIHAATD 73 (167)
T ss_dssp EEEEEECCCHHHHHTHHHHHTTSTTEEEEEECSCHHHHHHHHHHTTCCCCCSSTTGGGGGCCSEEEECSCGG
T ss_pred eEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHhcccccccccHHHhcccccceeccccccc
Confidence 47999999999976 56677766 678889998762 2334455653 347788775 579999999943
|
| >d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=96.63 E-value=0.0046 Score=54.44 Aligned_cols=95 Identities=15% Similarity=0.213 Sum_probs=60.6
Q ss_pred CEEEEEe-cChhHHHHHHHhhcCCC--EEEEECCCCChhHHHHcCC-----------cccCHHHHhccCCEEEEecCC--
Q 007512 198 KTLAVLG-FGKVGSEVARRAKGLGM--HVIAHDPYAPADRARAIGV-----------DLVSFDEAIATADFISLHMPL-- 261 (600)
Q Consensus 198 ktiGIIG-lG~IG~~vA~~l~~~g~--~V~~~d~~~~~~~a~~~g~-----------~~~~l~ell~~aDvV~l~~Pl-- 261 (600)
.+|+||| .|.+|+.+|-.+...|. ++..+|.......+.++.- ...+..+.++.||+|+++.-.
T Consensus 1 sKv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~~~~~a~Dl~~~~~~~~~~~~~~~~~~~~~~~~aDivVitag~~~ 80 (144)
T d1mlda1 1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQLPDCLKGCDVVVIPAGVPR 80 (144)
T ss_dssp CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHHHHHHHHTTSSSSCEEEEEESGGGHHHHHTTCSEEEECCSCCC
T ss_pred CeEEEECCCChHHHHHHHHHHhCCccceEEEEeccccchhhHHHhhhhhhcCCCeEEcCCChHHHhCCCCEEEECCCcCC
Confidence 4899999 59999999999986664 7899997653333333321 112456889999999998653
Q ss_pred Cc-cccc-cc--cHh-------HhccCCCceEEEEccCCccccH
Q 007512 262 TP-ATSK-VL--NDE-------TFGKMKKGVRIINVARGGVIDE 294 (600)
Q Consensus 262 ~~-~t~~-li--~~~-------~l~~mk~gailvNvarg~ivde 294 (600)
.+ ++|. ++ |.+ .+.+..|+++++.++ ..+|.
T Consensus 81 ~~g~sR~~ll~~N~~i~~~i~~~i~~~~p~~iiivvt--NPvD~ 122 (144)
T d1mlda1 81 KPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIIS--NPVNS 122 (144)
T ss_dssp CTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECS--SCHHH
T ss_pred CCCCCcchHHHHHHHHHHHHHHHHHhcCCCeEEEEec--Cchhh
Confidence 22 2221 11 111 223347889999985 44553
|
| >d1mv8a3 c.26.3.1 (A:301-436) GDP-mannose 6-dehydrogenase, GDP-binding domain {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain family: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain domain: GDP-mannose 6-dehydrogenase, GDP-binding domain species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.61 E-value=0.00089 Score=58.35 Aligned_cols=87 Identities=18% Similarity=0.222 Sum_probs=62.9
Q ss_pred eccCCEEEEEec----------ChhHHHHHHHhhcCCCEEEEECCCCChhHH-------HH-----cCCc-ccCHHHHhc
Q 007512 194 SLVGKTLAVLGF----------GKVGSEVARRAKGLGMHVIAHDPYAPADRA-------RA-----IGVD-LVSFDEAIA 250 (600)
Q Consensus 194 ~l~gktiGIIGl----------G~IG~~vA~~l~~~g~~V~~~d~~~~~~~a-------~~-----~g~~-~~~l~ell~ 250 (600)
.+.+++|||+|+ +.-.-.+++.|...|.+|.+|||+.+.... .. .+.. ..++++++.
T Consensus 10 ~~~~kkI~ilGlafK~~t~D~R~Sps~~li~~L~~~g~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~i~ 89 (136)
T d1mv8a3 10 SHDTRKVGLLGLSFKAGTDDLRESPLVELAEMLIGKGYELRIFDRNVEYARVHGANKEYIESKIPHVSSLLVSDLDEVVA 89 (136)
T ss_dssp TSSCCEEEEECCSSSTTCCCCTTCHHHHHHHHHHHTTCEEEEECHHHHHHTTSSSCHHHHHHTSHHHHTTBCSCHHHHHH
T ss_pred hcCCCEEEEEEEEECCCCcchhcCHHHHHHHHHhhhhccccccCCCCCHHHHhhhhhhhhhhccccccceeehhhhhhhh
Confidence 456899999998 456778999999999999999996422110 00 1112 348999999
Q ss_pred cCCEEEEecCCCccccccccHhHhccCCCceEEEEc
Q 007512 251 TADFISLHMPLTPATSKVLNDETFGKMKKGVRIINV 286 (600)
Q Consensus 251 ~aDvV~l~~Pl~~~t~~li~~~~l~~mk~gailvNv 286 (600)
.||+|+++++-. +- .+....++++.+|+|+
T Consensus 90 ~~D~ivi~t~h~-~f-----~~l~~~~~~~~~I~D~ 119 (136)
T d1mv8a3 90 SSDVLVLGNGDE-LF-----VDLVNKTPSGKKLVDL 119 (136)
T ss_dssp HCSEEEECSCCG-GG-----HHHHHSCCTTCEEEES
T ss_pred hceEEEEEeCCH-HH-----HHHHHHhcCCCEEEEC
Confidence 999999999833 22 2334457778899997
|
| >d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Pyrobaculum islandicum [TaxId: 2277]
Probab=96.61 E-value=0.0076 Score=57.61 Aligned_cols=107 Identities=24% Similarity=0.272 Sum_probs=72.3
Q ss_pred ceeccCCEEEEEecChhHHHHHHHhhcCCCEEEEECCC--------C-ChhHHH----------------HcCCccc-CH
Q 007512 192 GVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPY--------A-PADRAR----------------AIGVDLV-SF 245 (600)
Q Consensus 192 g~~l~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~--------~-~~~~a~----------------~~g~~~~-~l 245 (600)
+..|.|+|+.|=|+|++|+.+|+.|...|++|++++.. - +.+... ..+.+.. +.
T Consensus 26 ~~~l~g~~v~IqGfGnVG~~~a~~L~~~Gakvv~vsD~~g~i~~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (242)
T d1v9la1 26 WGGIEGKTVAIQGMGNVGRWTAYWLEKMGAKVIAVSDINGVAYRKEGLNVELIQKNKGLTGPALVELFTTKDNAEFVKNP 105 (242)
T ss_dssp HSCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEEECSSCEEECTTCCCTHHHHHTTTSCHHHHHHHHHHTSCCCCCSST
T ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEeecccccccccccccHHHHHHHhhcchhhHHHhhhhccCceEeeCc
Confidence 34799999999999999999999999999999985432 1 111111 1122222 23
Q ss_pred HHHh-ccCCEEEEecCCCccccccccHhHhccCCCceEEEEccCCccccHHHHHHhHhcCCc
Q 007512 246 DEAI-ATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVIDEEALVRALDSGRV 306 (600)
Q Consensus 246 ~ell-~~aDvV~l~~Pl~~~t~~li~~~~l~~mk~gailvNvarg~ivde~aL~~aL~~g~i 306 (600)
++++ ..||+++-|.. .+.|+.+...+|+- .+|+=.+-+++ ..++- +.|.+..|
T Consensus 106 ~~i~~~~~DIliPcA~-----~~~I~~~~a~~i~a-k~IvegAN~p~-t~~a~-~~L~~rgI 159 (242)
T d1v9la1 106 DAIFKLDVDIFVPAAI-----ENVIRGDNAGLVKA-RLVVEGANGPT-TPEAE-RILYERGV 159 (242)
T ss_dssp TGGGGCCCSEEEECSC-----SSCBCTTTTTTCCC-SEEECCSSSCB-CHHHH-HHHHTTTC
T ss_pred chhccccccEEeecch-----hccccHHHHHhccc-CEEEecCCCCC-ChhHH-HHHHhCCe
Confidence 4555 47999998875 45678887777764 46666777776 54443 55666555
|
| >d1b26a1 c.2.1.7 (A:179-412) Glutamate dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=96.60 E-value=0.014 Score=55.49 Aligned_cols=108 Identities=21% Similarity=0.294 Sum_probs=74.1
Q ss_pred cceeccCCEEEEEecChhHHHHHHHhh-cCCCEEEEEC--------CCC-ChhHH---H-Hc-------CCcccCHHHHh
Q 007512 191 VGVSLVGKTLAVLGFGKVGSEVARRAK-GLGMHVIAHD--------PYA-PADRA---R-AI-------GVDLVSFDEAI 249 (600)
Q Consensus 191 ~g~~l~gktiGIIGlG~IG~~vA~~l~-~~g~~V~~~d--------~~~-~~~~a---~-~~-------g~~~~~l~ell 249 (600)
.+.++.|+|+.|=|+|.+|+.+|+.|. .+|++|++.+ |.. +.... . .. +.+..+.++++
T Consensus 25 ~~~~l~g~~vaIqG~GnVG~~~a~~L~~e~Ga~vv~vsd~~G~i~~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (234)
T d1b26a1 25 LGIDPKKATVAVQGFGNVGQFAALLISQELGSKVVAVSDSRGGIYNPEGFDVEELIRYKKEHGTVVTYPKGERITNEELL 104 (234)
T ss_dssp TTCCTTTCEEEEECCSHHHHHHHHHHHHHHCCEEEEEEETTEEEECTTCCCHHHHHHHHHHSSCSTTCSSCEEECHHHHH
T ss_pred cCCCcCCCEEEEECCCHHHHHHHHHHHHhcCCceEEeecCCCcEEeccccchHHHHHHHHhhcceeccccceeecccccc
Confidence 356799999999999999999999995 7899998754 332 22111 1 11 12334667777
Q ss_pred c-cCCEEEEecCCCccccccccHhHhccCCCceEEEEccCCccccHHHHHHhHhcCCc
Q 007512 250 A-TADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVIDEEALVRALDSGRV 306 (600)
Q Consensus 250 ~-~aDvV~l~~Pl~~~t~~li~~~~l~~mk~gailvNvarg~ivde~aL~~aL~~g~i 306 (600)
. .||+++-|.- .+.|+.+...+++-. +|+-.+-+++- .++ .+.|.+..|
T Consensus 105 ~~~~DI~~PcA~-----~~~I~~~~a~~l~~~-~I~e~AN~p~t-~~a-~~~L~~rgI 154 (234)
T d1b26a1 105 ELDVDILVPAAL-----EGAIHAGNAERIKAK-AVVEGANGPTT-PEA-DEILSRRGI 154 (234)
T ss_dssp TSCCSEEEECSC-----TTCBCHHHHTTCCCS-EEECCSSSCBC-HHH-HHHHHHTTC
T ss_pred ccccceeecchh-----cccccHHHHHHhhhc-eEeecCCCCCC-HHH-HHHHHHCCe
Confidence 6 8999988753 566899999888753 66777777764 344 244555544
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=96.60 E-value=0.0011 Score=60.32 Aligned_cols=46 Identities=26% Similarity=0.363 Sum_probs=39.3
Q ss_pred cCCEEEEEecChhHHHHHHHhhcCCC-EEEEECCCC-ChhHHHHcCCc
Q 007512 196 VGKTLAVLGFGKVGSEVARRAKGLGM-HVIAHDPYA-PADRARAIGVD 241 (600)
Q Consensus 196 ~gktiGIIGlG~IG~~vA~~l~~~g~-~V~~~d~~~-~~~~a~~~g~~ 241 (600)
.|.+|.|+|.|.||...++.++.+|. +|++.|++. ..+.++++|..
T Consensus 27 ~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~lGa~ 74 (174)
T d1jqba2 27 MGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFYGAT 74 (174)
T ss_dssp TTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHHHTCS
T ss_pred CCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHhhCcc
Confidence 47899999999999999999999997 799999876 45667778863
|
| >d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Clostridium thermocellum [TaxId: 1515]
Probab=96.58 E-value=0.0015 Score=57.54 Aligned_cols=91 Identities=18% Similarity=0.148 Sum_probs=54.5
Q ss_pred CEEEEEecChhHHHHHHHhhcCC--CEEEEECCCCCh--hHHHHcC--Cc-------ccCHHHHhccCCEEEEecCCCc-
Q 007512 198 KTLAVLGFGKVGSEVARRAKGLG--MHVIAHDPYAPA--DRARAIG--VD-------LVSFDEAIATADFISLHMPLTP- 263 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~g--~~V~~~d~~~~~--~~a~~~g--~~-------~~~l~ell~~aDvV~l~~Pl~~- 263 (600)
++|+|||.|.+|..+|-.+...+ -++..||..... ..+.++. .. ...-.+.+++||+|+++.-...
T Consensus 2 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~~~~adivvitag~~~~ 81 (142)
T d1y6ja1 2 SKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYAGDYSDVKDCDVIVVTAGANRK 81 (142)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC--CGGGGTTCSEEEECCCC---
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeccCCccceeeeeeccCcccCCCeeEeeCcHHHhCCCceEEEecccccC
Confidence 58999999999999999987554 489999976633 2222221 11 1123456899999999854222
Q ss_pred --cccc-cc--cH-------hHhccCCCceEEEEccC
Q 007512 264 --ATSK-VL--ND-------ETFGKMKKGVRIINVAR 288 (600)
Q Consensus 264 --~t~~-li--~~-------~~l~~mk~gailvNvar 288 (600)
+++. ++ |. +.+....|++++++++.
T Consensus 82 ~~~~r~~l~~~N~~i~~~i~~~i~~~~p~ai~ivvtN 118 (142)
T d1y6ja1 82 PGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILVVSN 118 (142)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHCCSCEEEECSS
T ss_pred cCcchhHHhhHHHHHHHHHHHHhhccCCCceEEEecC
Confidence 1211 11 11 12333568899999854
|
| >d1x7da_ c.2.1.13 (A:) Ornithine cyclodeaminase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Ornithine cyclodeaminase-like domain: Ornithine cyclodeaminase species: Pseudomonas putida [TaxId: 303]
Probab=96.55 E-value=0.0024 Score=64.23 Aligned_cols=88 Identities=19% Similarity=0.280 Sum_probs=65.5
Q ss_pred CCEEEEEecChhHHHHHHHhh-cCC-CEEEEECCCCC-hh-HHHH----cCCcc---cCHHHHhccCCEEEEecCCCccc
Q 007512 197 GKTLAVLGFGKVGSEVARRAK-GLG-MHVIAHDPYAP-AD-RARA----IGVDL---VSFDEAIATADFISLHMPLTPAT 265 (600)
Q Consensus 197 gktiGIIGlG~IG~~vA~~l~-~~g-~~V~~~d~~~~-~~-~a~~----~g~~~---~~l~ell~~aDvV~l~~Pl~~~t 265 (600)
-++++|||.|..+..-++.+. -++ -+|.+||++.. .+ .+.+ .|+.. .+++++++.||+|++|++ ++.+
T Consensus 128 a~~l~iiG~G~QA~~~~~a~~~v~~i~~V~v~~r~~~~~~~~~~~l~~~~g~~v~~~~s~~eav~~ADIi~t~Ta-s~s~ 206 (340)
T d1x7da_ 128 ARKMALIGNGAQSEFQALAFHKHLGIEEIVAYDTDPLATAKLIANLKEYSGLTIRRASSVAEAVKGVDIITTVTA-DKAY 206 (340)
T ss_dssp CCEEEEECCSTTHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHTTCTTCEEEECSSHHHHHTTCSEEEECCC-CSSE
T ss_pred CceEEEEcccHHHHHHHHHHhhhcceeeeEEEecChHHHHHHHHhhhhccCCCceecCCHHHHHhcCCceeeccc-cCCC
Confidence 368999999999999988876 556 48999999862 22 2222 24432 389999999999999997 4445
Q ss_pred cccccHhHhccCCCceEEEEccC
Q 007512 266 SKVLNDETFGKMKKGVRIINVAR 288 (600)
Q Consensus 266 ~~li~~~~l~~mk~gailvNvar 288 (600)
.-+++.+ .+|||+.|..+|.
T Consensus 207 ~Pv~~~~---~l~pG~hI~aiGs 226 (340)
T d1x7da_ 207 ATIITPD---MLEPGMHLNAVGG 226 (340)
T ss_dssp EEEECGG---GCCTTCEEEECSC
T ss_pred Ccccchh---hcCCCCEEeeccc
Confidence 5667654 4699999998875
|
| >d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chloroflexus aurantiacus [TaxId: 1108]
Probab=96.55 E-value=0.0018 Score=56.97 Aligned_cols=90 Identities=20% Similarity=0.244 Sum_probs=55.1
Q ss_pred CEEEEEecChhHHHHHHHhhcCC-CEEEEECCCCChhHHHHcC-----------Cc--ccCHHHHhccCCEEEEecCCC-
Q 007512 198 KTLAVLGFGKVGSEVARRAKGLG-MHVIAHDPYAPADRARAIG-----------VD--LVSFDEAIATADFISLHMPLT- 262 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~g-~~V~~~d~~~~~~~a~~~g-----------~~--~~~l~ell~~aDvV~l~~Pl~- 262 (600)
+||+|||.|.+|.++|-.+...+ .+++.+|.......+.... .. ..+--+.+++||+|+++....
T Consensus 2 ~KI~IIGaG~VG~~~A~~l~~~~l~dl~l~D~~~~~~~~~~~Dl~~~~~~~~~~~~i~~~~d~~~~~~advvvitag~~~ 81 (142)
T d1uxja1 2 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGTNNYADTANSDVIVVTSGAPR 81 (142)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCGGGGTTCSEEEECCSCC-
T ss_pred CeEEEECCCHHHHHHHHHHHhCCcceEEEEeeccccchhHHHHhhccccccCCCCEEEecCcHHHhcCCCEEEEeeeccC
Confidence 69999999999999998887444 4899999876543222111 11 112224579999999998532
Q ss_pred -c-ccc-ccc--cH-------hHhccCCCceEEEEcc
Q 007512 263 -P-ATS-KVL--ND-------ETFGKMKKGVRIINVA 287 (600)
Q Consensus 263 -~-~t~-~li--~~-------~~l~~mk~gailvNva 287 (600)
+ +++ .++ |. ..+.+..|+++++.++
T Consensus 82 ~~~~~r~dl~~~N~~i~~~i~~~i~k~~p~aivivvt 118 (142)
T d1uxja1 82 KPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVN 118 (142)
T ss_dssp --------CHHHHHHHHHHHHHHHGGGCTTCEEEECS
T ss_pred CcCcchhHHHhHHHHHHHHHHHHHhccCCCceEEEeC
Confidence 2 122 111 11 1233346788888874
|
| >d1u8sa1 d.58.18.5 (A:2-87) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: ACT-like family: Glycine cleavage system transcriptional repressor domain: putative transcriptional repressor VC2159 species: Vibrio cholerae [TaxId: 666]
Probab=96.54 E-value=0.00062 Score=54.78 Aligned_cols=49 Identities=16% Similarity=0.208 Sum_probs=37.1
Q ss_pred cEEEEEecCCCCChhhHHhhhhcCCccccceEeeeecCCCcEEEEEEeC
Q 007512 527 SIILCRQVDQPGMIGTVGSILGSENVNVSFMSVGRVAPRKHAVMAIGVD 575 (600)
Q Consensus 527 ~~Liv~~~D~pG~Ia~V~~iL~~~~INIa~m~v~R~~~g~~al~~i~~D 575 (600)
..+-+.-+|+||+++.|++.|+++|+||.+++..+....-..+|.++.+
T Consensus 6 ~vitv~G~DrpGiva~vt~~l~~~g~NI~d~~~~~~~~~~~~~~~v~~~ 54 (86)
T d1u8sa1 6 LVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLISGS 54 (86)
T ss_dssp EEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEEC
T ss_pred EEEEEEeCCCChHHHHHHHHHHHCCCeEEEeEeEEECCeeEEEEEEEcC
Confidence 3445557999999999999999999999999887653322345555554
|
| >d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.52 E-value=0.002 Score=57.02 Aligned_cols=92 Identities=16% Similarity=0.134 Sum_probs=58.1
Q ss_pred cCCEEEEEecChhHHHHHHHhhcCC--CEEEEECCCCChhHHH--Hc----C-----Ccc-cCHHHHhccCCEEEEecCC
Q 007512 196 VGKTLAVLGFGKVGSEVARRAKGLG--MHVIAHDPYAPADRAR--AI----G-----VDL-VSFDEAIATADFISLHMPL 261 (600)
Q Consensus 196 ~gktiGIIGlG~IG~~vA~~l~~~g--~~V~~~d~~~~~~~a~--~~----g-----~~~-~~l~ell~~aDvV~l~~Pl 261 (600)
.+++|+|||.|.+|..+|..+...| -++..||.......+. ++ . ... ..-.+.+++||+|+++.-.
T Consensus 5 ~~~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~~~~~d~~~l~daDvvvitag~ 84 (148)
T d1ldna1 5 GGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGDYDDCRDADLVVICAGA 84 (148)
T ss_dssp TSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEECCGGGTTTCSEEEECCSC
T ss_pred CCCeEEEECcCHHHHHHHHHHHhcCCCceEEEEeeccccccchhccHhhCccccCCCeEEEECCHHHhccceeEEEeccc
Confidence 4789999999999999999987544 4899999865322111 11 0 111 1234678999999998764
Q ss_pred Cc---ccc-ccc--cH-------hHhccCCCceEEEEcc
Q 007512 262 TP---ATS-KVL--ND-------ETFGKMKKGVRIINVA 287 (600)
Q Consensus 262 ~~---~t~-~li--~~-------~~l~~mk~gailvNva 287 (600)
.. +++ .++ |. +.+.+..|++++++++
T Consensus 85 ~~~~~~~R~dl~~~N~~i~~~i~~~i~~~~p~a~~ivvt 123 (148)
T d1ldna1 85 NQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVAT 123 (148)
T ss_dssp CCCTTTCSGGGHHHHHHHHHHHHHHHHHHTCCSEEEECS
T ss_pred ccccCcchhHHHHHHHHHHHHHHHHHHhhCCCceEEEec
Confidence 32 111 111 11 1233345788999984
|
| >d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Glycinamide ribonucleotide transformylase PurT, N-domain species: Escherichia coli [TaxId: 562]
Probab=96.52 E-value=0.0014 Score=55.28 Aligned_cols=38 Identities=39% Similarity=0.589 Sum_probs=34.4
Q ss_pred eccCCEEEEEecChhHHHHHHHhhcCCCEEEEECCCCC
Q 007512 194 SLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAP 231 (600)
Q Consensus 194 ~l~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~ 231 (600)
...+.||||+|-|-.|+.+|..++.+|++++++||+..
T Consensus 8 ~~~~~kigIlGgGQL~rMla~aA~~lG~~v~v~d~~~~ 45 (111)
T d1kjqa2 8 RPAATRVMLLGSGELGKEVAIECQRLGVEVIAVDRYAD 45 (111)
T ss_dssp STTCCEEEEESCSHHHHHHHHHHHTTTCEEEEEESSTT
T ss_pred CCCCCEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCCCC
Confidence 34567899999999999999999999999999999874
|
| >d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]
Probab=96.48 E-value=0.002 Score=57.85 Aligned_cols=96 Identities=15% Similarity=0.182 Sum_probs=61.1
Q ss_pred eeccCCEEEEEecChhHHHHHHHhhcCCC--EEEEECCCCChhHHHHcCC---------c---ccCHHHHhccCCEEEEe
Q 007512 193 VSLVGKTLAVLGFGKVGSEVARRAKGLGM--HVIAHDPYAPADRARAIGV---------D---LVSFDEAIATADFISLH 258 (600)
Q Consensus 193 ~~l~gktiGIIGlG~IG~~vA~~l~~~g~--~V~~~d~~~~~~~a~~~g~---------~---~~~l~ell~~aDvV~l~ 258 (600)
..+..++|+|||.|.+|.++|-.+...|. ++..||.......++.+.. . ...-.+.+++||+|+++
T Consensus 16 ~~~~~~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~~~~~a~g~alDl~h~~~~~~~~~~~~~~d~~~~~~adiVVit 95 (160)
T d1i0za1 16 ATVPNNKITVVGVGQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQHGSLFLQTPKIVADKDYSVTANSKIVVVT 95 (160)
T ss_dssp CCCCSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCCCSEEEECSSGGGGTTCSEEEEC
T ss_pred ccCCCCeEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccchhHHHHHHHhccccccCCCeEEeccchhhcccccEEEEe
Confidence 34567899999999999999999987765 8999998753322222111 0 11223568999999997
Q ss_pred cCCCc---cccc-cc--cHh-------HhccCCCceEEEEccC
Q 007512 259 MPLTP---ATSK-VL--NDE-------TFGKMKKGVRIINVAR 288 (600)
Q Consensus 259 ~Pl~~---~t~~-li--~~~-------~l~~mk~gailvNvar 288 (600)
.-... +++- ++ |.. .+....+++++++++.
T Consensus 96 Ag~~~~~g~tR~~l~~~N~~i~~~i~~~i~~~~p~aiiivvtN 138 (160)
T d1i0za1 96 AGVRQQEGESRLNLVQRNVNVFKFIIPQIVKYSPDCIIIVVSN 138 (160)
T ss_dssp CSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECSS
T ss_pred cCCccccCcchHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeCC
Confidence 75322 2221 11 111 2233467889999854
|
| >d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Lactobacillus pentosus [TaxId: 1589]
Probab=96.48 E-value=0.0019 Score=57.13 Aligned_cols=92 Identities=14% Similarity=0.132 Sum_probs=56.5
Q ss_pred cCCEEEEEecChhHHHHHHHhhcCC--CEEEEECCCCChhHHHHc---------CCc--c-cCHHHHhccCCEEEEecCC
Q 007512 196 VGKTLAVLGFGKVGSEVARRAKGLG--MHVIAHDPYAPADRARAI---------GVD--L-VSFDEAIATADFISLHMPL 261 (600)
Q Consensus 196 ~gktiGIIGlG~IG~~vA~~l~~~g--~~V~~~d~~~~~~~a~~~---------g~~--~-~~l~ell~~aDvV~l~~Pl 261 (600)
..+||+|||.|.+|..+|..|...| -++..||......++..+ +-. . .+.+ .+++||+|+++...
T Consensus 4 ~~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~~~~~~g~a~Dl~~a~~~~~~~~~~~~d~~-~~~~adivvitag~ 82 (146)
T d1ez4a1 4 NHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYSGEYS-DCKDADLVVITAGA 82 (146)
T ss_dssp TBCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEECCGG-GGTTCSEEEECCCC
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeecccchhHHHHHHHhccccccCCceEeeccHH-HhccccEEEEeccc
Confidence 3569999999999999999988555 599999986532221111 101 1 1444 56899999998753
Q ss_pred Cc---cccc-cc--cH-------hHhccCCCceEEEEccC
Q 007512 262 TP---ATSK-VL--ND-------ETFGKMKKGVRIINVAR 288 (600)
Q Consensus 262 ~~---~t~~-li--~~-------~~l~~mk~gailvNvar 288 (600)
.. +++. ++ |. +.+..-.|++++++++-
T Consensus 83 ~~~~g~~r~~l~~~N~~i~~~~~~~i~~~~p~aivivvtN 122 (146)
T d1ez4a1 83 PQKPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVAAN 122 (146)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHTTCCSEEEECSS
T ss_pred ccCCCCCHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEeCC
Confidence 22 1111 11 11 12344568889999863
|
| >d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Clostridium symbiosum [TaxId: 1512]
Probab=96.46 E-value=0.004 Score=60.10 Aligned_cols=35 Identities=37% Similarity=0.593 Sum_probs=32.3
Q ss_pred ceeccCCEEEEEecChhHHHHHHHhhcCCCEEEEE
Q 007512 192 GVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAH 226 (600)
Q Consensus 192 g~~l~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~ 226 (600)
+..|.|+|+.|=|+|++|+.+|+.|...|++|++.
T Consensus 31 ~~~l~g~~v~IQGfGnVG~~~a~~L~e~Gakvvav 65 (255)
T d1bgva1 31 NDTLVGKTVALAGFGNVAWGAAKKLAELGAKAVTL 65 (255)
T ss_dssp TCCSTTCEEEECCSSHHHHHHHHHHHHHTCEEEEE
T ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEE
Confidence 45799999999999999999999999999999863
|
| >d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=96.44 E-value=0.0028 Score=56.26 Aligned_cols=92 Identities=18% Similarity=0.182 Sum_probs=58.2
Q ss_pred CCEEEEEecChhHHHHHHHhhcCC-CEEEEECCCCChhHHH--Hc-------CCc----ccCHHHHhccCCEEEEecCCC
Q 007512 197 GKTLAVLGFGKVGSEVARRAKGLG-MHVIAHDPYAPADRAR--AI-------GVD----LVSFDEAIATADFISLHMPLT 262 (600)
Q Consensus 197 gktiGIIGlG~IG~~vA~~l~~~g-~~V~~~d~~~~~~~a~--~~-------g~~----~~~l~ell~~aDvV~l~~Pl~ 262 (600)
..||+|||.|.+|+.+|..+...+ .++..||.......+. ++ +.. ..+..+.+++||+|+++.-..
T Consensus 3 ~~KI~IIGaG~VG~~~a~~l~~~~l~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~v~~~~~~~~~~~advvvitag~~ 82 (150)
T d1t2da1 3 KAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSNTYDDLAGADVVIVTAGFT 82 (150)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEECCGGGGTTCSEEEECCSCS
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCeEEEEeccCCcceeeecchhhhccccCCCcEEEecccccccCCCcEEEEecccc
Confidence 368999999999999998887444 3899999876432221 11 111 123456789999999998643
Q ss_pred cc---c-----cc-cc--cHh-------HhccCCCceEEEEccC
Q 007512 263 PA---T-----SK-VL--NDE-------TFGKMKKGVRIINVAR 288 (600)
Q Consensus 263 ~~---t-----~~-li--~~~-------~l~~mk~gailvNvar 288 (600)
.. + +- ++ |.. .+.+..|++++++++.
T Consensus 83 ~~~g~~~~~~~R~~l~~~N~~iv~~i~~~i~~~~p~aivivvtN 126 (150)
T d1t2da1 83 KAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIVVTN 126 (150)
T ss_dssp SCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSS
T ss_pred cCCCCCccccchhHHHHHHHHHHHHHHHHHHhcCCCeEEEEecC
Confidence 21 1 11 11 111 1333458899999864
|
| >d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Toxoplasma gondii [TaxId: 5811]
Probab=96.42 E-value=0.0022 Score=57.18 Aligned_cols=65 Identities=18% Similarity=0.269 Sum_probs=47.1
Q ss_pred cCCEEEEEecChhHHHHHHHhhcCCC-EEEEECCCCChhHHHHc---------CCc-----ccCHHHHhccCCEEEEecC
Q 007512 196 VGKTLAVLGFGKVGSEVARRAKGLGM-HVIAHDPYAPADRARAI---------GVD-----LVSFDEAIATADFISLHMP 260 (600)
Q Consensus 196 ~gktiGIIGlG~IG~~vA~~l~~~g~-~V~~~d~~~~~~~a~~~---------g~~-----~~~l~ell~~aDvV~l~~P 260 (600)
+.+||+|||.|.+|+.+|..+...++ ++..||.+......... +.. ..+.++.++.||+|++++.
T Consensus 6 k~~KI~IIGaG~VG~~lA~~l~~~~~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~~~~~~~adiVvitag 85 (154)
T d1pzga1 6 RRKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAEYSYEAALTGADCVIVTAG 85 (154)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEEECSHHHHHTTCSEEEECCS
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCceEEEEEeccccchhHHHHHhhhccccCCeeEEeccCchhhhhcCCCeEEEecc
Confidence 35799999999999999988775553 89999987643222111 111 1246788999999999885
|
| >d1gtma1 c.2.1.7 (A:181-419) Glutamate dehydrogenase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=96.42 E-value=0.0086 Score=57.11 Aligned_cols=105 Identities=27% Similarity=0.377 Sum_probs=70.3
Q ss_pred eccCCEEEEEecChhHHHHHHHhh-cCCCEEEEE-CCCC--------ChhHHH----Hc-------CCcccCHHHHh-cc
Q 007512 194 SLVGKTLAVLGFGKVGSEVARRAK-GLGMHVIAH-DPYA--------PADRAR----AI-------GVDLVSFDEAI-AT 251 (600)
Q Consensus 194 ~l~gktiGIIGlG~IG~~vA~~l~-~~g~~V~~~-d~~~--------~~~~a~----~~-------g~~~~~l~ell-~~ 251 (600)
.|.|+||.|-|+|.+|+.+|+.|. .+|++|++. |.+. +.+... .. +.+.++.++++ ..
T Consensus 29 ~l~g~~v~IqGfGnVG~~~a~~L~~~~G~kvv~vsD~~g~i~~~~G~d~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 108 (239)
T d1gtma1 29 TLKGKTIAIQGYGNAGYYLAKIMSEDFGMKVVAVSDSKGGIYNPDGLNADEVLKWKNEHGSVKDFPGATNITNEELLELE 108 (239)
T ss_dssp CSTTCEEEEECCSHHHHHHHHHHHHTTCCEEEEEECSSCEEEEEEEECHHHHHHHHHHHSSSTTCTTSEEECHHHHHHSC
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHhcCcceeeccccccceecCCcCCHHHHHHHHHhccccccCCCCeeeccccccccc
Confidence 599999999999999999999885 689999875 4321 111111 11 22344566665 57
Q ss_pred CCEEEEecCCCccccccccHhHhccCCCceEEEEccCCccccHHHHHHhHhcCCc
Q 007512 252 ADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVIDEEALVRALDSGRV 306 (600)
Q Consensus 252 aDvV~l~~Pl~~~t~~li~~~~l~~mk~gailvNvarg~ivde~aL~~aL~~g~i 306 (600)
||+++-|.- .+.|+.+...+++- .+|+-.+-+++- .++ .+.|.+..|
T Consensus 109 ~DIl~PcA~-----~~~I~~~~a~~i~a-k~I~e~AN~p~t-~ea-~~~L~~rgI 155 (239)
T d1gtma1 109 VDVLAPAAI-----EEVITKKNADNIKA-KIVAEVANGPVT-PEA-DEILFEKGI 155 (239)
T ss_dssp CSEEEECSC-----SCCBCTTGGGGCCC-SEEECCSSSCBC-HHH-HHHHHHTTC
T ss_pred ccEEeeccc-----cccccHHHHHhccc-cEEEecCCCCCC-HHH-HHHHHHCCC
Confidence 999988875 46688888877764 366777777764 333 244555444
|
| >d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Probable oxidoreductase At4g09670 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=96.35 E-value=0.0024 Score=57.99 Aligned_cols=64 Identities=14% Similarity=0.195 Sum_probs=48.0
Q ss_pred EEEEEecChhHHHHHHHhhcC-CCEEEE-ECCCCC--hhHHHHcCCc-----ccCHHHHh--ccCCEEEEecCCC
Q 007512 199 TLAVLGFGKVGSEVARRAKGL-GMHVIA-HDPYAP--ADRARAIGVD-----LVSFDEAI--ATADFISLHMPLT 262 (600)
Q Consensus 199 tiGIIGlG~IG~~vA~~l~~~-g~~V~~-~d~~~~--~~~a~~~g~~-----~~~l~ell--~~aDvV~l~~Pl~ 262 (600)
++||||+|.+|+..++.++.. +++|.+ +|+... ...+.+.++. +.++++++ .+.|+|++++|..
T Consensus 3 ki~iIG~G~~g~~~~~~l~~~~~~~i~ai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~iD~v~I~tp~~ 77 (184)
T d1ydwa1 3 RIGVMGCADIARKVSRAIHLAPNATISGVASRSLEKAKAFATANNYPESTKIHGSYESLLEDPEIDALYVPLPTS 77 (184)
T ss_dssp EEEEESCCTTHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTCCTTCEEESSHHHHHHCTTCCEEEECCCGG
T ss_pred EEEEEcCCHHHHHHHHHHHhCCCCEEEEEEeCCccccccchhccccccceeecCcHHHhhhccccceeeecccch
Confidence 799999999999999999866 788886 687652 2234455542 34889988 4579999999843
|
| >d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Cow (Bos taurus) [TaxId: 9913]
Probab=96.34 E-value=0.0064 Score=59.64 Aligned_cols=107 Identities=21% Similarity=0.256 Sum_probs=69.7
Q ss_pred ceeccCCEEEEEecChhHHHHHHHhhcCCCEEEEEC--------CCC-ChhHHHH---c-C-C-----cccCHHHHhc-c
Q 007512 192 GVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHD--------PYA-PADRARA---I-G-V-----DLVSFDEAIA-T 251 (600)
Q Consensus 192 g~~l~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d--------~~~-~~~~a~~---~-g-~-----~~~~l~ell~-~ 251 (600)
...|.|+|+.|=|+|++|+.+|+.|...|++|++++ +.- +.+...+ . | + ...+-++++. .
T Consensus 31 ~~~L~gktvaIqGfGnVG~~~A~~L~e~Gakvv~vsD~~G~i~~~~Gld~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (293)
T d1hwxa1 31 TPGFGDKTFAVQGFGNVGLHSMRYLHRFGAKCVAVGESDGSIWNPDGIDPKELEDFKLQHGTILGFPKAKIYEGSILEVD 110 (293)
T ss_dssp CSSSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEEETTEEECCTTCCCHHHHHHHHHTTSSSTTCTTSCBCCSCGGGCC
T ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEccchhhccccccchHHHHHHHHHcCCeecccccccCCcccccCC
Confidence 457999999999999999999999999999998864 322 2222111 1 1 0 1122334443 7
Q ss_pred CCEEEEecCCCccccccccHhHhccCCCceEEEEccCCccccHHHHHHhHhcCCc
Q 007512 252 ADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVIDEEALVRALDSGRV 306 (600)
Q Consensus 252 aDvV~l~~Pl~~~t~~li~~~~l~~mk~gailvNvarg~ivde~aL~~aL~~g~i 306 (600)
||+++-|. +.+.|+.+....++-. +|+-.+-+++ ..++. +.|.+..|
T Consensus 111 ~DIliPaA-----~~~~I~~~~a~~l~ak-~I~EgAN~P~-t~eA~-~~L~~~gI 157 (293)
T d1hwxa1 111 CDILIPAA-----SEKQLTKSNAPRVKAK-IIAEGANGPT-TPQAD-KIFLERNI 157 (293)
T ss_dssp CSEEEECS-----SSSCBCTTTGGGCCCS-EEECCSSSCB-CHHHH-HHHHHTTC
T ss_pred ccEEeecc-----ccccccHHHHHHHhhC-EEeccCCCCC-CcchH-HHHHHCCC
Confidence 99998876 3566778777777643 6666777776 43442 34544444
|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408]
Probab=96.26 E-value=0.0032 Score=57.73 Aligned_cols=40 Identities=33% Similarity=0.353 Sum_probs=37.3
Q ss_pred cceeccCCEEEEEe-cChhHHHHHHHhhcCCCEEEEECCCC
Q 007512 191 VGVSLVGKTLAVLG-FGKVGSEVARRAKGLGMHVIAHDPYA 230 (600)
Q Consensus 191 ~g~~l~gktiGIIG-lG~IG~~vA~~l~~~g~~V~~~d~~~ 230 (600)
.|..|.||++.|.| -|-||+.+|+.|...|++|+..+++.
T Consensus 17 ~~~~l~gK~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~ 57 (191)
T d1luaa1 17 AGGSVKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKL 57 (191)
T ss_dssp TTSCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred cCCCCCCCEEEEECCCHHHHHHHHHHHHhhccchhhcccch
Confidence 57899999999999 79999999999999999999999875
|
| >d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=96.26 E-value=0.0045 Score=54.35 Aligned_cols=90 Identities=17% Similarity=0.080 Sum_probs=57.1
Q ss_pred CEEEEEecChhHHHHHHHhhcCC--CEEEEECCCCChhHHHH---------cCC--c--ccCHHHHhccCCEEEEecCCC
Q 007512 198 KTLAVLGFGKVGSEVARRAKGLG--MHVIAHDPYAPADRARA---------IGV--D--LVSFDEAIATADFISLHMPLT 262 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~g--~~V~~~d~~~~~~~a~~---------~g~--~--~~~l~ell~~aDvV~l~~Pl~ 262 (600)
++|+|||.|.+|.++|-.+...| -++..||.......+.. ... . ..+--+.+++||+|++.....
T Consensus 1 MKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~alDl~~~~~~~~~~~~i~~~~d~~~~~~adiVvitag~~ 80 (142)
T d1ojua1 1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGADYSLLKGSEIIVVTAGLA 80 (142)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEESCGGGGTTCSEEEECCCCC
T ss_pred CEEEEECcCHHHHHHHHHHHhcCcCceEEEEecccchhhHHHHHHhhhccccCCCCccccCCCHHHhccccEEEEecccc
Confidence 58999999999999999887444 48999997653322211 111 1 112236899999999987532
Q ss_pred ccccccc-------cH-------hHhccCCCceEEEEccC
Q 007512 263 PATSKVL-------ND-------ETFGKMKKGVRIINVAR 288 (600)
Q Consensus 263 ~~t~~li-------~~-------~~l~~mk~gailvNvar 288 (600)
. +.+.- |. +.+.+..|++++++++-
T Consensus 81 ~-~~g~~r~~l~~~n~~i~~~i~~~i~~~~p~aivivvtN 119 (142)
T d1ojua1 81 R-KPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTN 119 (142)
T ss_dssp C-CSSCCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECSS
T ss_pred C-CCCCchHHHHHHhhHHHHHHHHHHHhhCCCcEEEEecC
Confidence 2 22221 11 12334567899999865
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.25 E-value=0.0021 Score=57.24 Aligned_cols=46 Identities=30% Similarity=0.496 Sum_probs=39.6
Q ss_pred cCCEEEEEecChhHHHHHHHhhcCCCEEEEECCCC-ChhHHHHcCCc
Q 007512 196 VGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYA-PADRARAIGVD 241 (600)
Q Consensus 196 ~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~-~~~~a~~~g~~ 241 (600)
.|.+|.|+|.|.||...++.++.+|.+|++.|++. ..+.+++.|..
T Consensus 27 ~g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~~~~~~a~~~Ga~ 73 (166)
T d1llua2 27 PGQWVAISGIGGLGHVAVQYARAMGLHVAAIDIDDAKLELARKLGAS 73 (166)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCS
T ss_pred CCCEEEEeeccccHHHHHHHHHHcCCccceecchhhHHHhhhccCcc
Confidence 37899999999999999999999999999999876 45667777763
|
| >d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=96.24 E-value=0.0039 Score=56.91 Aligned_cols=64 Identities=20% Similarity=0.307 Sum_probs=44.2
Q ss_pred EEEEEecChhHHHHHHHhhcC-CCEEEEE-CCCCChhHH--HHcC-----------------Cc-ccCHHHHhccCCEEE
Q 007512 199 TLAVLGFGKVGSEVARRAKGL-GMHVIAH-DPYAPADRA--RAIG-----------------VD-LVSFDEAIATADFIS 256 (600)
Q Consensus 199 tiGIIGlG~IG~~vA~~l~~~-g~~V~~~-d~~~~~~~a--~~~g-----------------~~-~~~l~ell~~aDvV~ 256 (600)
+|||.|+|+||+.++|.+... +++|++. |+.+..... ...+ +. ..++.+++.++|+|+
T Consensus 3 KVaINGfGRIGR~v~Ral~~~~dievVaInd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~g~~~~~~~~vDiVi 82 (178)
T d1b7go1 3 NVAVNGYGTIGKRVADAIIKQPDMKLVGVAKTSPNYEAFIAHRRGIRIYVPQQSIKKFEESGIPVAGTVEDLIKTSDIVV 82 (178)
T ss_dssp EEEEECCSHHHHHHHHHHHTCTTEEEEEEECSSCSHHHHHHHHTTCCEECCGGGHHHHHTTTCCCCCCHHHHHHHCSEEE
T ss_pred EEEEECCCHHHHHHHHHHHhCCCCEEEEEECCCCcHHHHHhcccCcceeccCccceeccccceecCCchhhhhhcCCEEE
Confidence 799999999999999999865 6898885 544332211 1111 11 125667778889998
Q ss_pred EecCCC
Q 007512 257 LHMPLT 262 (600)
Q Consensus 257 l~~Pl~ 262 (600)
-|+|..
T Consensus 83 ecTG~f 88 (178)
T d1b7go1 83 DTTPNG 88 (178)
T ss_dssp ECCSTT
T ss_pred ECCCCc
Confidence 888853
|
| >d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=96.18 E-value=0.0026 Score=57.68 Aligned_cols=97 Identities=14% Similarity=0.179 Sum_probs=63.8
Q ss_pred ceeccCCEEEEEecChhHHHHHHHhhcCCCEEEEECCCCChhH--HHH----cC------CcccCHHHHhccCCEEEEec
Q 007512 192 GVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPADR--ARA----IG------VDLVSFDEAIATADFISLHM 259 (600)
Q Consensus 192 g~~l~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~~~~--a~~----~g------~~~~~l~ell~~aDvV~l~~ 259 (600)
+.++.||++.|+|.|-.+++++..|...| +|..++++..... +.. .. +.+.+++..+..+|+|+.|+
T Consensus 13 ~~~~~~k~vlIlGaGG~arai~~aL~~~~-~i~I~nR~~~ka~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~dliIn~t 91 (177)
T d1nvta1 13 IGRVKDKNIVIYGAGGAARAVAFELAKDN-NIIIANRTVEKAEALAKEIAEKLNKKFGEEVKFSGLDVDLDGVDIIINAT 91 (177)
T ss_dssp HCCCCSCEEEEECCSHHHHHHHHHHTSSS-EEEEECSSHHHHHHHHHHHHHHHTCCHHHHEEEECTTCCCTTCCEEEECS
T ss_pred CCCcCCCEEEEECCcHHHHHHHHHHcccc-ceeeehhhhhHHHHHHHHHHHhhchhhhhhhhhhhhhhccchhhhhccCC
Confidence 55799999999999999999999998877 9999998753211 111 11 12335666788899999999
Q ss_pred CCCcccc-ccccHhHhccCCCceEEEEccCC
Q 007512 260 PLTPATS-KVLNDETFGKMKKGVRIINVARG 289 (600)
Q Consensus 260 Pl~~~t~-~li~~~~l~~mk~gailvNvarg 289 (600)
|...... ..-....+..++++.++.|+.-.
T Consensus 92 p~g~~~~~~~~~~~~~~~~~~~~~v~D~~y~ 122 (177)
T d1nvta1 92 PIGMYPNIDVEPIVKAEKLREDMVVMDLIYN 122 (177)
T ss_dssp CTTCTTCCSSCCSSCSTTCCSSSEEEECCCS
T ss_pred cccccccccccchhhhhccCcccceeeecCC
Confidence 9643111 11011123345667777776543
|
| >d1omoa_ c.2.1.13 (A:) Archaeal alanine dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Ornithine cyclodeaminase-like domain: Archaeal alanine dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=96.15 E-value=0.006 Score=60.69 Aligned_cols=88 Identities=18% Similarity=0.236 Sum_probs=64.7
Q ss_pred CCEEEEEecChhHHHHHHHhh-cCCC-EEEEECCCCCh-----hHHHHcCCc-ccCHHHHhccCCEEEEecCCCcccccc
Q 007512 197 GKTLAVLGFGKVGSEVARRAK-GLGM-HVIAHDPYAPA-----DRARAIGVD-LVSFDEAIATADFISLHMPLTPATSKV 268 (600)
Q Consensus 197 gktiGIIGlG~IG~~vA~~l~-~~g~-~V~~~d~~~~~-----~~a~~~g~~-~~~l~ell~~aDvV~l~~Pl~~~t~~l 268 (600)
-+++||||.|..++.-++.+. .+.. +|.+|+++... +.....++. .++.++.+..||+|+.|+|.+ .-+
T Consensus 125 ~~~l~iiGaG~QA~~~~~al~~~~~i~~i~v~~r~~e~~~~~~~~~~~~~~~~~~~~~~a~~~aDiV~taT~s~---~P~ 201 (320)
T d1omoa_ 125 SSVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVREKAAKKFVSYCEDRGISASVQPAEEASRCDVLVTTTPSR---KPV 201 (320)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHHHTTCCEEECCHHHHTSSSEEEECCCCS---SCC
T ss_pred ccEEEEecCcccHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHhcCCccccchhhhhccccEEEEeccCc---ccc
Confidence 358999999999999999987 4554 89999987622 122233443 346788899999999998743 456
Q ss_pred ccHhHhccCCCceEEEEccCCc
Q 007512 269 LNDETFGKMKKGVRIINVARGG 290 (600)
Q Consensus 269 i~~~~l~~mk~gailvNvarg~ 290 (600)
+..+ .+|||+.+..+|...
T Consensus 202 ~~~~---~l~~G~hv~~iGs~~ 220 (320)
T d1omoa_ 202 VKAE---WVEEGTHINAIGADG 220 (320)
T ss_dssp BCGG---GCCTTCEEEECSCCS
T ss_pred cchh---hcCCCCeEeecCCcc
Confidence 6554 479999999987543
|
| >d1u8sa2 d.58.18.5 (A:88-180) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: ACT-like family: Glycine cleavage system transcriptional repressor domain: putative transcriptional repressor VC2159 species: Vibrio cholerae [TaxId: 666]
Probab=96.11 E-value=0.0051 Score=49.90 Aligned_cols=33 Identities=9% Similarity=0.245 Sum_probs=29.6
Q ss_pred EEEEecCCCCChhhHHhhhhcCCccccceEeee
Q 007512 529 ILCRQVDQPGMIGTVGSILGSENVNVSFMSVGR 561 (600)
Q Consensus 529 Liv~~~D~pG~Ia~V~~iL~~~~INIa~m~v~R 561 (600)
+.+.-+|+||+++.|++.|+++|+||..++...
T Consensus 9 v~v~g~DrpGIV~~it~~la~~~~nI~~l~t~~ 41 (93)
T d1u8sa2 9 VYVESDDKLGLTEKFTQFFAQRQIGMASLSAQT 41 (93)
T ss_dssp EEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEE
T ss_pred EEEEECCCCCHHHHHHHHHHHcCCCchhhhccc
Confidence 356689999999999999999999999998754
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.11 E-value=0.0026 Score=56.48 Aligned_cols=87 Identities=22% Similarity=0.392 Sum_probs=58.4
Q ss_pred cCCEEEEEecChhHHHHHHHhhcCCCEEEEECCCC-ChhHHHHcCCccc------C----HHHHhccCCEEEEecCCCcc
Q 007512 196 VGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYA-PADRARAIGVDLV------S----FDEAIATADFISLHMPLTPA 264 (600)
Q Consensus 196 ~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~-~~~~a~~~g~~~~------~----l~ell~~aDvV~l~~Pl~~~ 264 (600)
.|.+|.|+|.|.||...++.++..|.+|++.+.+. ..+.++++|+..+ + +.+.-...|.++.+.+ .++
T Consensus 27 ~g~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~~r~~~~k~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~ 105 (168)
T d1rjwa2 27 PGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKELGADLVVNPLKEDAAKFMKEKVGGVHAAVVTAV-SKP 105 (168)
T ss_dssp TTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCSEEECTTTSCHHHHHHHHHSSEEEEEESSC-CHH
T ss_pred CCCEEEEeecccchhhhhHHHhcCCCeEeccCCCHHHhhhhhhcCcceecccccchhhhhcccccCCCceEEeecC-CHH
Confidence 47899999999999999999999999999999876 4566777776432 1 2223344555555544 222
Q ss_pred ccccccHhHhccCCCceEEEEcc
Q 007512 265 TSKVLNDETFGKMKKGVRIINVA 287 (600)
Q Consensus 265 t~~li~~~~l~~mk~gailvNva 287 (600)
+ -...+..|+++..++.++
T Consensus 106 ~----~~~a~~~l~~~G~i~~~g 124 (168)
T d1rjwa2 106 A----FQSAYNSIRRGGACVLVG 124 (168)
T ss_dssp H----HHHHHHHEEEEEEEEECC
T ss_pred H----HHHHHHHhccCCceEecc
Confidence 1 134455566666666664
|
| >d2b0ja2 c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopterin hydrogenase, HMD {Archaeon Methanocaldococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 5,10-methenyltetrahydromethanopterin hydrogenase, HMD species: Archaeon Methanocaldococcus jannaschii [TaxId: 2190]
Probab=96.08 E-value=0.0032 Score=60.30 Aligned_cols=68 Identities=12% Similarity=0.224 Sum_probs=55.5
Q ss_pred cCCccc-CHHHHhccCCEEEEecCCCccccccccHhHhccCCCceEEEEccCCccccHHHHHHhHhcCCc
Q 007512 238 IGVDLV-SFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVIDEEALVRALDSGRV 306 (600)
Q Consensus 238 ~g~~~~-~l~ell~~aDvV~l~~Pl~~~t~~li~~~~l~~mk~gailvNvarg~ivde~aL~~aL~~g~i 306 (600)
.|+... +..|++++||+|++|+|..+.+..++ ++....+++|++|+|++.........+.+.++...+
T Consensus 127 ~Gv~v~~d~~Eav~~ADiII~~vP~~~~v~~Vi-~~I~~~l~~g~Iiid~STi~~~~~~~l~e~l~~kgi 195 (242)
T d2b0ja2 127 VGLKVTSDDREAVEGADIVITWLPKGNKQPDII-KKFADAIPEGAIVTHACTIPTTKFAKIFKDLGREDL 195 (242)
T ss_dssp GTCEEESCHHHHHTTCSEEEECCTTCTTHHHHH-HHHGGGSCTTCEEEECSSSCHHHHHHHHHHTTCTTS
T ss_pred CCCEEECCHHHHHhcCCeEEEeeecHHHHHHHH-HHHHhhCCCCcEEEecCCCcHHHHHHHHHhcccCCC
Confidence 456543 78899999999999999666666777 567788999999999999888777778887877655
|
| >d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.01 E-value=0.0036 Score=56.15 Aligned_cols=95 Identities=19% Similarity=0.170 Sum_probs=59.2
Q ss_pred eccCCEEEEEecChhHHHHHHHhhcCCC--EEEEECCCCChhHHHH--c-------CCc---ccCHHHHhccCCEEEEec
Q 007512 194 SLVGKTLAVLGFGKVGSEVARRAKGLGM--HVIAHDPYAPADRARA--I-------GVD---LVSFDEAIATADFISLHM 259 (600)
Q Consensus 194 ~l~gktiGIIGlG~IG~~vA~~l~~~g~--~V~~~d~~~~~~~a~~--~-------g~~---~~~l~ell~~aDvV~l~~ 259 (600)
.+...+|+|||.|.+|..+|-.+...|. ++..||.......+.. + +.. ..+-.+.+++||+|+++.
T Consensus 16 ~~~~~KI~IIGaG~VG~~~A~~l~~~~l~~elvL~D~~~~~a~g~alDl~~~~~~~~~~~~~~~~d~~~~~~adivvita 95 (159)
T d2ldxa1 16 KLSRCKITVVGVGDVGMACAISILLKGLADELALVDADTDKLRGEALDLQHGSLFLSTPKIVFGKDYNVSANSKLVIITA 95 (159)
T ss_dssp CCCCCEEEEECCSHHHHHHHHHHHTTTSCSEEEEECSCHHHHHHHHHHHHHTTTTCSCCEEEEESSGGGGTTEEEEEECC
T ss_pred cCCCCeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCchhhhccHHHHhCcchhcCCCeEEeccchhhhccccEEEEec
Confidence 3455689999999999999999986654 8999997753222211 1 111 112235569999999987
Q ss_pred CC--Cc-cccc-cc--cHhH-------hccCCCceEEEEccC
Q 007512 260 PL--TP-ATSK-VL--NDET-------FGKMKKGVRIINVAR 288 (600)
Q Consensus 260 Pl--~~-~t~~-li--~~~~-------l~~mk~gailvNvar 288 (600)
-. .+ +++. ++ |.+. +....|++++++++.
T Consensus 96 g~~~~~~~~R~dll~~N~~i~~~i~~~i~~~~p~~ivivvtN 137 (159)
T d2ldxa1 96 GARMVSGQTRLDLLQRNVAIMKAIVPGVIQNSPDCKIIVVTN 137 (159)
T ss_dssp SCCCCTTTCSSCTTHHHHHHHHHHTTTHHHHSTTCEEEECSS
T ss_pred ccccCCCCCHHHHHHHHHHHHHHHHHHHhccCCCeEEEEeCC
Confidence 53 22 2221 22 1111 223468899999864
|
| >d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]
Probab=95.99 E-value=0.0047 Score=54.31 Aligned_cols=94 Identities=21% Similarity=0.240 Sum_probs=57.5
Q ss_pred CEEEEEecChhHHHHHHHhhcCC--CEEEEECCCCChhHHHHc----C-----C---cccCHHHHhccCCEEEEecCCCc
Q 007512 198 KTLAVLGFGKVGSEVARRAKGLG--MHVIAHDPYAPADRARAI----G-----V---DLVSFDEAIATADFISLHMPLTP 263 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~g--~~V~~~d~~~~~~~a~~~----g-----~---~~~~l~ell~~aDvV~l~~Pl~~ 263 (600)
.||+|||.|.+|..+|-.+...| -++..+|......++..+ . . ...+--+.+++||+|+++.-...
T Consensus 2 ~Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D~~~~~~~g~a~Dl~~a~~~~~~~~i~~~~~~~~~~daDvVVitaG~~~ 81 (143)
T d1llda1 2 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGSDDPEICRDADMVVITAGPRQ 81 (143)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEEESCGGGGTTCSEEEECCCCCC
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccccchhHHHHHHhccccCCCceeecCCCHHHhhCCcEEEEeccccc
Confidence 47999999999999998887544 489999976533222111 1 1 11122356899999999875321
Q ss_pred ---cccc-cc--cH-------hHhccCCCceEEEEccCCcccc
Q 007512 264 ---ATSK-VL--ND-------ETFGKMKKGVRIINVARGGVID 293 (600)
Q Consensus 264 ---~t~~-li--~~-------~~l~~mk~gailvNvarg~ivd 293 (600)
+++. ++ |. ..+....|+++++.++ ..+|
T Consensus 82 ~~g~~R~dl~~~N~~i~~~i~~~i~~~~p~ai~ivvt--NPvD 122 (143)
T d1llda1 82 KPGQSRLELVGATVNILKAIMPNLVKVAPNAIYMLIT--NPVD 122 (143)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECC--SSHH
T ss_pred CCCCchhhhhhhhHHHHHHHHHHHHhhCCCeEEEEeC--CchH
Confidence 1211 11 11 1233356788888885 4445
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=95.91 E-value=0.0027 Score=57.23 Aligned_cols=87 Identities=21% Similarity=0.155 Sum_probs=54.5
Q ss_pred cCCEEEEEecChhHHHHHHHhhcCCCE-EEEECCCC-ChhHHHHcCCccc------CHHHHhc-----cCCEEEEecCCC
Q 007512 196 VGKTLAVLGFGKVGSEVARRAKGLGMH-VIAHDPYA-PADRARAIGVDLV------SFDEAIA-----TADFISLHMPLT 262 (600)
Q Consensus 196 ~gktiGIIGlG~IG~~vA~~l~~~g~~-V~~~d~~~-~~~~a~~~g~~~~------~l~ell~-----~aDvV~l~~Pl~ 262 (600)
.|.+|.|+|.|.||...++.++.+|.+ |++.|++. ..+.++++|...+ ++.+.+. ..|+|+-|+...
T Consensus 28 ~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~Ga~~~i~~~~~~~~~~i~~~t~gg~D~vid~~G~~ 107 (174)
T d1f8fa2 28 PASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGATHVINSKTQDPVAAIKEITDGGVNFALESTGSP 107 (174)
T ss_dssp TTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTSCEEEEEECSCCH
T ss_pred CCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHHcCCeEEEeCCCcCHHHHHHHHcCCCCcEEEEcCCcH
Confidence 488999999999999999999999875 56677765 4566777776321 2222211 146666665521
Q ss_pred ccccccccHhHhccCCCceEEEEcc
Q 007512 263 PATSKVLNDETFGKMKKGVRIINVA 287 (600)
Q Consensus 263 ~~t~~li~~~~l~~mk~gailvNva 287 (600)
+ + -+..+..++++..++.+|
T Consensus 108 ~-~----~~~~~~~~~~~G~i~~~G 127 (174)
T d1f8fa2 108 E-I----LKQGVDALGILGKIAVVG 127 (174)
T ss_dssp H-H----HHHHHHTEEEEEEEEECC
T ss_pred H-H----HHHHHhcccCceEEEEEe
Confidence 1 1 123344456666666554
|
| >d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Haemophilus influenzae [TaxId: 727]
Probab=95.87 E-value=0.0044 Score=50.71 Aligned_cols=68 Identities=18% Similarity=0.261 Sum_probs=50.0
Q ss_pred cCCEEEEEecChhH-HHHHHHhhcCCCEEEEECCCCCh--hHHHHcCCccc--CHHHHhccCCEEEEecCCCc
Q 007512 196 VGKTLAVLGFGKVG-SEVARRAKGLGMHVIAHDPYAPA--DRARAIGVDLV--SFDEAIATADFISLHMPLTP 263 (600)
Q Consensus 196 ~gktiGIIGlG~IG-~~vA~~l~~~g~~V~~~d~~~~~--~~a~~~g~~~~--~l~ell~~aDvV~l~~Pl~~ 263 (600)
+.|++=|||.|-+| +++|+.|+..|++|.|+|...+. +...+.|+... .-.+.+...|+|+..-...+
T Consensus 7 ~~~~ihfiGigG~GMs~LA~~L~~~G~~VsGSD~~~~~~~~~L~~~Gi~v~~g~~~~~i~~~d~vV~S~AI~~ 79 (96)
T d1p3da1 7 RVQQIHFIGIGGAGMSGIAEILLNEGYQISGSDIADGVVTQRLAQAGAKIYIGHAEEHIEGASVVVVSSAIKD 79 (96)
T ss_dssp TCCEEEEETTTSTTHHHHHHHHHHHTCEEEEEESCCSHHHHHHHHTTCEEEESCCGGGGTTCSEEEECTTSCT
T ss_pred hCCEEEEEEECHHHHHHHHHHHHhCCCEEEEEeCCCChhhhHHHHCCCeEEECCccccCCCCCEEEECCCcCC
Confidence 46789999999999 55699999999999999986532 44566787532 23445678898877644333
|
| >d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Hypothetical protein TM0312 species: Thermotoga maritima [TaxId: 2336]
Probab=95.86 E-value=0.0056 Score=55.44 Aligned_cols=64 Identities=22% Similarity=0.379 Sum_probs=46.5
Q ss_pred CEEEEEecChhHHH-HHHHhhcCC--CEEEE-ECCCCCh--hHHHHcCCc--ccCHHHHhc--cCCEEEEecCC
Q 007512 198 KTLAVLGFGKVGSE-VARRAKGLG--MHVIA-HDPYAPA--DRARAIGVD--LVSFDEAIA--TADFISLHMPL 261 (600)
Q Consensus 198 ktiGIIGlG~IG~~-vA~~l~~~g--~~V~~-~d~~~~~--~~a~~~g~~--~~~l~ell~--~aDvV~l~~Pl 261 (600)
.++||||+|.+|+. .+..++.++ ++|.+ +|++... ..+...+.. +.+++++++ +.|+|++|+|.
T Consensus 4 irigiIG~G~~g~~~h~~~l~~~~~~~~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~ell~~~~id~v~I~tp~ 77 (181)
T d1zh8a1 4 IRLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKMVGNPAVFDSYEELLESGLVDAVDLTLPV 77 (181)
T ss_dssp EEEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHHHSSCEEESCHHHHHHSSCCSEEEECCCG
T ss_pred cEEEEEcCCHHHHHHHHHHHHhCCCCeEEEEEEeccHhhhhhhhccccccceeeeeeccccccccceeeccccc
Confidence 37999999999987 477787653 57774 7887522 234455654 458999986 57999999994
|
| >d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Biliverdin IX beta reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.85 E-value=0.0031 Score=58.03 Aligned_cols=66 Identities=17% Similarity=0.200 Sum_probs=49.1
Q ss_pred cCCEEEEEe-cChhHHHHHHHhhcCCCEEEEECCCCCh-hHHHHcCCcc--------cCHHHHhccCCEEEEecCC
Q 007512 196 VGKTLAVLG-FGKVGSEVARRAKGLGMHVIAHDPYAPA-DRARAIGVDL--------VSFDEAIATADFISLHMPL 261 (600)
Q Consensus 196 ~gktiGIIG-lG~IG~~vA~~l~~~g~~V~~~d~~~~~-~~a~~~g~~~--------~~l~ell~~aDvV~l~~Pl 261 (600)
..|+|.|+| .|.||+.++++|...|++|.++++++.. ......+++. .+++++++.+|+|+.++..
T Consensus 2 ~~kkIlV~GatG~iG~~v~~~Ll~~g~~V~~~~R~~~~~~~~~~~~~~~~~gD~~d~~~l~~al~~~d~vi~~~g~ 77 (205)
T d1hdoa_ 2 AVKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSEGPRPAHVVVGDVLQAADVDKTVAGQDAVIVLLGT 77 (205)
T ss_dssp CCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSCSSSCCCSEEEESCTTSHHHHHHHHTTCSEEEECCCC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEEcChhhcccccccccccccccccchhhHHHHhcCCCEEEEEecc
Confidence 468999999 7999999999999999999999876522 1111233322 2466789999999988863
|
| >d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH species: Lactobacillus confusus [TaxId: 1583]
Probab=95.85 E-value=0.0027 Score=56.14 Aligned_cols=91 Identities=16% Similarity=0.206 Sum_probs=56.3
Q ss_pred CEEEEEecChhHHHHHHHhhcCC--CEEEEECCCCChhHHHHc---------CCc---ccCHHHHhccCCEEEEecCCCc
Q 007512 198 KTLAVLGFGKVGSEVARRAKGLG--MHVIAHDPYAPADRARAI---------GVD---LVSFDEAIATADFISLHMPLTP 263 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~g--~~V~~~d~~~~~~~a~~~---------g~~---~~~l~ell~~aDvV~l~~Pl~~ 263 (600)
|+|+|||.|.+|..+|-.+...| -++..||.......+..+ +.. ..+-.+.+++||+|+++.....
T Consensus 2 kKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~~~Dl~~a~~~~~~~~~~~~~d~~~l~~adiVVitaG~~~ 81 (146)
T d1hyha1 2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVINDWAALADADVVISTLGNIK 81 (146)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEESCGGGGTTCSEEEECCSCGG
T ss_pred CeEEEECcCHHHHHHHHHHHhcCCCceEEEEecccchhhhHHHhhhccccccCCccceeccCHHHhccccEEEEeccccc
Confidence 79999999999999999887554 489999976532211111 111 1122356899999999876422
Q ss_pred -------cccc-cc--cH-------hHhccCCCceEEEEccC
Q 007512 264 -------ATSK-VL--ND-------ETFGKMKKGVRIINVAR 288 (600)
Q Consensus 264 -------~t~~-li--~~-------~~l~~mk~gailvNvar 288 (600)
.++. ++ |. +.+....|++++++++-
T Consensus 82 ~~~~~~g~~R~~l~~~N~~i~~~i~~~i~~~~p~aivivvtN 123 (146)
T d1hyha1 82 LQQDNPTGDRFAELKFTSSMVQSVGTNLKESGFHGVLVVISN 123 (146)
T ss_dssp GTC-------CTTHHHHHHHHHHHHHHHHHTTCCSEEEECSS
T ss_pred cccccCCccHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEecC
Confidence 1121 11 11 12334568889999853
|
| >d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glucose-fructose oxidoreductase, N-terminal domain species: Zymomonas mobilis [TaxId: 542]
Probab=95.84 E-value=0.0047 Score=58.01 Aligned_cols=65 Identities=23% Similarity=0.259 Sum_probs=47.4
Q ss_pred CCEEEEEecChhHHH-HHHHhhcC-CCEEEE-ECCCCC--hhHHHHcCCc------ccCHHHHhc--cCCEEEEecCC
Q 007512 197 GKTLAVLGFGKVGSE-VARRAKGL-GMHVIA-HDPYAP--ADRARAIGVD------LVSFDEAIA--TADFISLHMPL 261 (600)
Q Consensus 197 gktiGIIGlG~IG~~-vA~~l~~~-g~~V~~-~d~~~~--~~~a~~~g~~------~~~l~ell~--~aDvV~l~~Pl 261 (600)
--+|||||+|.+|+. +...++.. +++|.+ +|++.. ...++..|+. +.++++++. +.|+|++++|.
T Consensus 33 ~iriaiIG~G~~~~~~~~~~~~~~~~~~ivav~d~~~~~a~~~~~~~~i~~~~~~~~~d~~ell~~~~iD~V~I~tp~ 110 (221)
T d1h6da1 33 RFGYAIVGLGKYALNQILPGFAGCQHSRIEALVSGNAEKAKIVAAEYGVDPRKIYDYSNFDKIAKDPKIDAVYIILPN 110 (221)
T ss_dssp CEEEEEECCSHHHHHTHHHHTTTCSSEEEEEEECSCHHHHHHHHHHTTCCGGGEECSSSGGGGGGCTTCCEEEECSCG
T ss_pred CEEEEEEcCcHHHHHHHHHHHHhCCCceEEEEecCCHHHHHHHHHhhccccccccccCchhhhcccccceeeeeccch
Confidence 348999999999975 66777765 788884 788752 2334555653 357899885 58899999983
|
| >d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain species: Escherichia coli [TaxId: 562]
Probab=95.74 E-value=0.0047 Score=48.65 Aligned_cols=35 Identities=29% Similarity=0.404 Sum_probs=32.6
Q ss_pred CEEEEEecChhHHHHHHHhhcCCCEEEEECCCCCh
Q 007512 198 KTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPA 232 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~~ 232 (600)
|||||+|-|-.|+.++..++.+|++++.+||..+.
T Consensus 2 k~vgIlG~GQLgrMl~~Aa~~LG~~v~vldp~~~~ 36 (78)
T d3etja2 2 KQVCVLGNGQLGRMLRQAGEPLGIAVWPVGLDAEP 36 (78)
T ss_dssp EEEEEEBCSHHHHHHHHHHGGGTEEEEEECTTSCG
T ss_pred CEEEEEcCCHHHHHHHHHHHHcCCEEEEEcCCCCC
Confidence 69999999999999999999999999999998643
|
| >d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.67 E-value=0.0018 Score=57.06 Aligned_cols=41 Identities=20% Similarity=0.234 Sum_probs=36.7
Q ss_pred cceeccCCEEEEEecChhHHHHHHHhhcCCCEEEEECCCCC
Q 007512 191 VGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAP 231 (600)
Q Consensus 191 ~g~~l~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~ 231 (600)
...+|.||++.|||-|.+|.+-|+.|..+|++|.+++|..+
T Consensus 7 l~~~l~gkrvLViGgG~va~~ka~~Ll~~GA~VtVvap~~~ 47 (150)
T d1kyqa1 7 LAHQLKDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPDLH 47 (150)
T ss_dssp EEECCTTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEEEC
T ss_pred hheeeCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 34689999999999999999999999999999999987643
|
| >d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase-like protein HI0607 species: Haemophilus influenzae [TaxId: 727]
Probab=95.61 E-value=0.0067 Score=54.39 Aligned_cols=66 Identities=15% Similarity=0.097 Sum_probs=47.8
Q ss_pred cCCEEEEEecChhHHHHHHHhhcCCC-EEEEECCCCCh--hHHHHcCCcccCHHHHhccCCEEEEecCCC
Q 007512 196 VGKTLAVLGFGKVGSEVARRAKGLGM-HVIAHDPYAPA--DRARAIGVDLVSFDEAIATADFISLHMPLT 262 (600)
Q Consensus 196 ~gktiGIIGlG~IG~~vA~~l~~~g~-~V~~~d~~~~~--~~a~~~g~~~~~l~ell~~aDvV~l~~Pl~ 262 (600)
.+|+|.|+|.|-.|++++..|+..|+ +|..++++... ..+...+....+- .-..++|+|+.|+|+.
T Consensus 16 ~~~~vlIlGaGGaarai~~aL~~~g~~~I~I~nR~~~ka~~L~~~~~~~~~~~-~~~~~~DliINaTpiG 84 (167)
T d1npya1 16 KNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALYGYAYINS-LENQQADILVNVTSIG 84 (167)
T ss_dssp TTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCHHHHHHHHHHHTCEEESC-CTTCCCSEEEECSSTT
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCCEEEEecccHHHHHHHHHhhhhhhhhc-ccccchhhheeccccC
Confidence 58899999999999999999999997 78899887532 1223334433211 1235789999999853
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=95.45 E-value=0.025 Score=50.84 Aligned_cols=46 Identities=35% Similarity=0.430 Sum_probs=40.2
Q ss_pred cCCEEEEEecChhHHHHHHHhhcCCC-EEEEECCCC-ChhHHHHcCCc
Q 007512 196 VGKTLAVLGFGKVGSEVARRAKGLGM-HVIAHDPYA-PADRARAIGVD 241 (600)
Q Consensus 196 ~gktiGIIGlG~IG~~vA~~l~~~g~-~V~~~d~~~-~~~~a~~~g~~ 241 (600)
.|.+|.|+|.|.||...++.++.+|. +|++.|++. ..+.++++|..
T Consensus 28 ~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~Ga~ 75 (174)
T d1e3ia2 28 PGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGAT 75 (174)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCS
T ss_pred CCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHHhCCC
Confidence 57899999999999999999999997 788899887 56778888864
|
| >d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Methanothermus fervidus [TaxId: 2180]
Probab=95.41 E-value=0.0098 Score=53.76 Aligned_cols=65 Identities=28% Similarity=0.362 Sum_probs=43.3
Q ss_pred CEEEEEecChhHHHHHHHhhcC-CCEEEEE-CCCCChh--HHHHcCCc------------------c-cCHHHHhccCCE
Q 007512 198 KTLAVLGFGKVGSEVARRAKGL-GMHVIAH-DPYAPAD--RARAIGVD------------------L-VSFDEAIATADF 254 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~-g~~V~~~-d~~~~~~--~a~~~g~~------------------~-~~l~ell~~aDv 254 (600)
++|||-|+|+||+.+.|.+... .++|.+. |+.+... .+...+.. . .+..+++.++|+
T Consensus 2 ~~VgINGfGRIGR~v~R~l~~~~di~vvaInd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~vDv 81 (171)
T d1cf2o1 2 KAVAINGYGTVGKRVADAIAQQDDMKVIGVSKTRPDFEARMALKKGYDLYVAIPERVKLFEKAGIEVAGTVDDMLDEADI 81 (171)
T ss_dssp EEEEEECCSHHHHHHHHHHHTSSSEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHTTCCCCEEHHHHHHTCSE
T ss_pred eEEEEEcCcHHHHHHHHHHHhCCCceEEEEecCCcHHHHHHHHhcCCceEecccccceeecccCcccCCChhHhhcCCCE
Confidence 4899999999999999998755 5888875 3333222 22232321 1 134566778888
Q ss_pred EEEecCCC
Q 007512 255 ISLHMPLT 262 (600)
Q Consensus 255 V~l~~Pl~ 262 (600)
|+-|+|.-
T Consensus 82 ViEcTG~f 89 (171)
T d1cf2o1 82 VIDCTPEG 89 (171)
T ss_dssp EEECCSTT
T ss_pred EEEccCCC
Confidence 88888854
|
| >d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Thermotoga maritima [TaxId: 2336]
Probab=95.39 E-value=0.013 Score=47.10 Aligned_cols=65 Identities=15% Similarity=0.218 Sum_probs=48.2
Q ss_pred CCEEEEEecChhHH-HHHHHhhcCCCEEEEECCCCCh--hHHHHcCCccc--CHHHHhccCCEEEEecCC
Q 007512 197 GKTLAVLGFGKVGS-EVARRAKGLGMHVIAHDPYAPA--DRARAIGVDLV--SFDEAIATADFISLHMPL 261 (600)
Q Consensus 197 gktiGIIGlG~IG~-~vA~~l~~~g~~V~~~d~~~~~--~~a~~~g~~~~--~l~ell~~aDvV~l~~Pl 261 (600)
.++|=|||.|-+|. ++|+.|+..|++|.|+|...+. +..++.|++.. .-.+.+.++|+|+..--.
T Consensus 1 ~~~ihfiGIgG~GMs~LA~~L~~~G~~VsGSD~~~~~~t~~L~~~Gi~i~~gh~~~~i~~~d~vV~SsAI 70 (89)
T d1j6ua1 1 HMKIHFVGIGGIGMSAVALHEFSNGNDVYGSNIEETERTAYLRKLGIPIFVPHSADNWYDPDLVIKTPAV 70 (89)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSSCCHHHHHHHHTTCCEESSCCTTSCCCCSEEEECTTC
T ss_pred CcEEEEEeECHHHHHHHHHHHHhCCCeEEEEeCCCChhHHHHHHCCCeEEeeecccccCCCCEEEEecCc
Confidence 36788999999998 6899999999999999987643 34567787542 123446788988775443
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=95.29 E-value=0.024 Score=51.06 Aligned_cols=46 Identities=33% Similarity=0.462 Sum_probs=40.8
Q ss_pred cCCEEEEEecChhHHHHHHHhhcCC-CEEEEECCCC-ChhHHHHcCCc
Q 007512 196 VGKTLAVLGFGKVGSEVARRAKGLG-MHVIAHDPYA-PADRARAIGVD 241 (600)
Q Consensus 196 ~gktiGIIGlG~IG~~vA~~l~~~g-~~V~~~d~~~-~~~~a~~~g~~ 241 (600)
.|.+|.|+|.|-+|...++.++.+| .+|++.|+.. ..+.++++|..
T Consensus 29 ~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~GA~ 76 (176)
T d1d1ta2 29 PGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAVGAT 76 (176)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHHTCS
T ss_pred CCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhcCCc
Confidence 5889999999999999999999998 5899999987 56788888864
|
| >d1pg5a2 c.78.1.1 (A:147-299) Aspartate carbamoyltransferase catalytic subunit {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Aspartate carbamoyltransferase catalytic subunit species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=95.28 E-value=0.037 Score=48.67 Aligned_cols=93 Identities=16% Similarity=0.141 Sum_probs=60.4
Q ss_pred ccCCEEEEEec---ChhHHHHHHHhhcCCCEEEEE-CCCC---ChhHHHHcCCcc---cCHHHHhccCCEEEEecCCCc-
Q 007512 195 LVGKTLAVLGF---GKVGSEVARRAKGLGMHVIAH-DPYA---PADRARAIGVDL---VSFDEAIATADFISLHMPLTP- 263 (600)
Q Consensus 195 l~gktiGIIGl---G~IG~~vA~~l~~~g~~V~~~-d~~~---~~~~a~~~g~~~---~~l~ell~~aDvV~l~~Pl~~- 263 (600)
|.|++|+|||= |++..+++..+..||++++.+ -|.. ........|... .++++.+++||+|..---...
T Consensus 1 l~gl~i~~vGD~~~sRv~~Sl~~~l~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~d~~eai~~aDvvy~~~~q~~~ 80 (153)
T d1pg5a2 1 IDGLVFALLGDLKYARTVNSLLRILTRFRPKLVYLISPQLLRARKEILDELNYPVKEVENPFEVINEVDVLYVTRIQKER 80 (153)
T ss_dssp STTCEEEEEECCSSCHHHHHHHHHGGGSCCSEEEEECCGGGCCCHHHHTTCCSCEEEESCGGGTGGGCSEEEEECCCSTT
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHHHcCCeeEEEecccccccchhhcccCCCeEEEEeCHHHHhhcCCeEEEeeeeehh
Confidence 57999999997 559999999999999986544 3321 122233344332 379999999999875321111
Q ss_pred ----------cccccccHhHhccCCCceEEEEcc
Q 007512 264 ----------ATSKVLNDETFGKMKKGVRIINVA 287 (600)
Q Consensus 264 ----------~t~~li~~~~l~~mk~gailvNva 287 (600)
.....++.+.++.+|++++|.-|.
T Consensus 81 ~~~~~~~~~~~~~y~v~~~~l~~~~~~~i~mH~L 114 (153)
T d1pg5a2 81 FVDEMEYEKIKGSYIVSLDLANKMKKDSIILHPL 114 (153)
T ss_dssp SSCHHHHHHHGGGGSBCHHHHHTSCTTCEEECCS
T ss_pred ccchhHHHHHHHhhhhhHHHHhccCCCeEEecCC
Confidence 011234666666777777777765
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=95.27 E-value=0.0082 Score=53.85 Aligned_cols=85 Identities=20% Similarity=0.377 Sum_probs=58.2
Q ss_pred cCCEEEEEec-ChhHHHHHHHhhcCCCEEEEECCCC-ChhHHHHcCCccc-CHHH------HhccCCEEEEecCCCcccc
Q 007512 196 VGKTLAVLGF-GKVGSEVARRAKGLGMHVIAHDPYA-PADRARAIGVDLV-SFDE------AIATADFISLHMPLTPATS 266 (600)
Q Consensus 196 ~gktiGIIGl-G~IG~~vA~~l~~~g~~V~~~d~~~-~~~~a~~~g~~~~-~l~e------ll~~aDvV~l~~Pl~~~t~ 266 (600)
.|++|.|.|- |.+|....+.++.+|++|++.+... ..+.+++.|++.+ +..+ ....+|+|+-++. + +
T Consensus 27 ~g~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~g~D~v~d~~G--~-~- 102 (171)
T d1iz0a2 27 PGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLALGAEEAATYAEVPERAKAWGGLDLVLEVRG--K-E- 102 (171)
T ss_dssp TTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHHTTCSEEEEGGGHHHHHHHTTSEEEEEECSC--T-T-
T ss_pred CCCEEEEEeccccchhhhhhhhcccccccccccccccccccccccccceeeehhhhhhhhhccccccccccccc--h-h-
Confidence 4789999995 9999999999999999999988765 4567778887432 2111 2234677766543 1 1
Q ss_pred ccccHhHhccCCCceEEEEcc
Q 007512 267 KVLNDETFGKMKKGVRIINVA 287 (600)
Q Consensus 267 ~li~~~~l~~mk~gailvNva 287 (600)
+ ...++.++++..++.+|
T Consensus 103 --~-~~~~~~l~~~G~~v~~G 120 (171)
T d1iz0a2 103 --V-EESLGLLAHGGRLVYIG 120 (171)
T ss_dssp --H-HHHHTTEEEEEEEEEC-
T ss_pred --H-HHHHHHHhcCCcEEEEe
Confidence 1 34566677777777765
|
| >d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=95.25 E-value=0.015 Score=52.61 Aligned_cols=33 Identities=24% Similarity=0.388 Sum_probs=26.7
Q ss_pred CEEEEEecChhHHHHHHHhhcC-CCEEEEE-CCCC
Q 007512 198 KTLAVLGFGKVGSEVARRAKGL-GMHVIAH-DPYA 230 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~-g~~V~~~-d~~~ 230 (600)
.+|||.|+|+||+.+.+.+... .++|++. |+.+
T Consensus 3 irIaINGfGRIGR~v~Ral~~~~dieiVaINd~~~ 37 (172)
T d2czca2 3 VKVGVNGYGTIGKRVAYAVTKQDDMELIGITKTKP 37 (172)
T ss_dssp EEEEEECCSHHHHHHHHHHHTCTTEEEEEEEESSC
T ss_pred EEEEEECCCHHHHHHHHHHHhCCCceEEEEecCCC
Confidence 4899999999999999998754 6888765 5443
|
| >d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=95.19 E-value=0.037 Score=48.42 Aligned_cols=95 Identities=19% Similarity=0.182 Sum_probs=57.5
Q ss_pred CEEEEEec-ChhHHHHHHHhh---cCCCEEEEECCCCCh-hHHHHc---CCc-------ccCHHHHhccCCEEEEecCC-
Q 007512 198 KTLAVLGF-GKVGSEVARRAK---GLGMHVIAHDPYAPA-DRARAI---GVD-------LVSFDEAIATADFISLHMPL- 261 (600)
Q Consensus 198 ktiGIIGl-G~IG~~vA~~l~---~~g~~V~~~d~~~~~-~~a~~~---g~~-------~~~l~ell~~aDvV~l~~Pl- 261 (600)
++|+|||. |.+|+++|-.+. .+.-++..+|..... ..+.++ ... ..+..+.+++||+|+++.-.
T Consensus 1 MKV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~~~~~g~a~Dl~h~~~~~~~~~~~~~~~~~~~~~aDvvvitaG~~ 80 (145)
T d2cmda1 1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDATPALEGADVVLISAGVR 80 (145)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSSTTHHHHHHHHHTSCSSCEEEEECSSCCHHHHTTCSEEEECCSCC
T ss_pred CEEEEEcCCChHHHHHHHHHHhCCCCCcEEEEecccccchhHHHHHHCCccccCCcEEEcCCCccccCCCCEEEECCCcc
Confidence 48999995 999999998864 356799999975422 112121 110 12234578999999998742
Q ss_pred -Cc-ccc-ccc--cH-------hHhccCCCceEEEEccCCccccH
Q 007512 262 -TP-ATS-KVL--ND-------ETFGKMKKGVRIINVARGGVIDE 294 (600)
Q Consensus 262 -~~-~t~-~li--~~-------~~l~~mk~gailvNvarg~ivde 294 (600)
++ +++ .++ |. +.+.+..|+++++.++ ..+|.
T Consensus 81 ~k~g~~R~dl~~~N~~i~~~v~~~i~~~~p~aivivvt--NPvD~ 123 (145)
T d2cmda1 81 RKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIIT--NPVNT 123 (145)
T ss_dssp CCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECS--SSHHH
T ss_pred CCCCcchhhHHHHHHHHHHHHHHHHHhhCCCcEEEEcc--CCchH
Confidence 22 122 122 11 1233356788899985 34553
|
| >d1pvva2 c.78.1.1 (A:151-313) Ornithine transcarbamoylase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Ornithine transcarbamoylase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=95.07 E-value=0.094 Score=46.41 Aligned_cols=94 Identities=19% Similarity=0.246 Sum_probs=65.5
Q ss_pred eccCCEEEEEecC-hhHHHHHHHhhcCCCEEEEECCCC--C-hh---HHHH----cCC--c-ccCHHHHhccCCEEEEec
Q 007512 194 SLVGKTLAVLGFG-KVGSEVARRAKGLGMHVIAHDPYA--P-AD---RARA----IGV--D-LVSFDEAIATADFISLHM 259 (600)
Q Consensus 194 ~l~gktiGIIGlG-~IG~~vA~~l~~~g~~V~~~d~~~--~-~~---~a~~----~g~--~-~~~l~ell~~aDvV~l~~ 259 (600)
+|.|++|++||=| ++..|++..+..||+++..+.|.. + .+ .+.+ .+. . ..++++.++.||+|..-.
T Consensus 1 sl~gl~Ia~VGD~~nv~~Sli~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ea~~~adviy~~~ 80 (163)
T d1pvva2 1 TIKGVKVVYVGDGNNVAHSLMIAGTKLGADVVVATPEGYEPDEKVIKWAEQNAAESGGSFELLHDPVKAVKDADVIYTDV 80 (163)
T ss_dssp CCTTCEEEEESCCCHHHHHHHHHHHHTTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCEEEEESCHHHHTTTCSEEEECC
T ss_pred CcCCCEEEEECCCcHHHHHHHHHHHHcCCeEEEecccccCCChHHHHHHHHhhhcccceEEEecCHHHHhhhccEEeecc
Confidence 4789999999975 477888999999999999998753 2 21 1111 122 2 247999999999998643
Q ss_pred CCC----cc--------ccccccHhHhccCCCceEEEEcc
Q 007512 260 PLT----PA--------TSKVLNDETFGKMKKGVRIINVA 287 (600)
Q Consensus 260 Pl~----~~--------t~~li~~~~l~~mk~gailvNva 287 (600)
=.. ++ ....++.+.++.+|++++|.-+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~y~v~~~~l~~ak~~~iimHpl 120 (163)
T d1pvva2 81 WASMGQEAEAEERRKIFRPFQVNKDLVKHAKPDYMFMHCL 120 (163)
T ss_dssp CCCSSTTSSSSHHHHHHGGGCBCHHHHHTSCTTCEEEECS
T ss_pred eeecccchhhHHHHHHhhhhhHHHHHHHhhCCCeEEecCC
Confidence 111 00 11345778888888888888886
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=95.00 E-value=0.0091 Score=53.40 Aligned_cols=86 Identities=23% Similarity=0.215 Sum_probs=54.7
Q ss_pred CCEEEEEecChhHHHHHHHhhcCCC-EEEEECCCC-ChhHHHHcCCccc-----C-HHHHhc-----cCCEEEEecCCCc
Q 007512 197 GKTLAVLGFGKVGSEVARRAKGLGM-HVIAHDPYA-PADRARAIGVDLV-----S-FDEAIA-----TADFISLHMPLTP 263 (600)
Q Consensus 197 gktiGIIGlG~IG~~vA~~l~~~g~-~V~~~d~~~-~~~~a~~~g~~~~-----~-l~ell~-----~aDvV~l~~Pl~~ 263 (600)
|.+|.|+|.|.+|...++.++.+|. .|++.|++. ..+.+++.|...+ + .++..+ ..|+|+-++....
T Consensus 33 g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~g~d~vid~~g~~~ 112 (172)
T d1h2ba2 33 GAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERLGADHVVDARRDPVKQVMELTRGRGVNVAMDFVGSQA 112 (172)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHTTCSEEEETTSCHHHHHHHHTTTCCEEEEEESSCCHH
T ss_pred CCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhhcccceeecCcccHHHHHHHhhCCCCceEEEEecCcch
Confidence 7899999999999999999998875 778888876 3456667775321 1 122221 2566666665221
Q ss_pred cccccccHhHhccCCCceEEEEcc
Q 007512 264 ATSKVLNDETFGKMKKGVRIINVA 287 (600)
Q Consensus 264 ~t~~li~~~~l~~mk~gailvNva 287 (600)
+ -+..+..++++..++.+|
T Consensus 113 -~----~~~a~~~l~~~G~iv~~G 131 (172)
T d1h2ba2 113 -T----VDYTPYLLGRMGRLIIVG 131 (172)
T ss_dssp -H----HHHGGGGEEEEEEEEECC
T ss_pred -H----HHHHHHHHhCCCEEEEEe
Confidence 1 123344566666666665
|
| >d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Haemophilus influenzae [TaxId: 727]
Probab=94.97 E-value=0.0043 Score=56.04 Aligned_cols=71 Identities=14% Similarity=0.097 Sum_probs=49.0
Q ss_pred ceeccCCEEEEEecChhHHHHHHHhhcCCCEEEEECCCCChh--HHHHcC----CcccCHH-HHhccCCEEEEecCCC
Q 007512 192 GVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPAD--RARAIG----VDLVSFD-EAIATADFISLHMPLT 262 (600)
Q Consensus 192 g~~l~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~~~--~a~~~g----~~~~~l~-ell~~aDvV~l~~Pl~ 262 (600)
+..+.||++.|+|.|-.+++++..|...+.+|..+++..... .+...+ +...+.+ ..+.++|+|+.|+|..
T Consensus 13 ~~~~~~k~vlIlGaGGaarai~~aL~~~~~~i~I~nR~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~diiIN~tp~g 90 (171)
T d1p77a1 13 NWLRPNQHVLILGAGGATKGVLLPLLQAQQNIVLANRTFSKTKELAERFQPYGNIQAVSMDSIPLQTYDLVINATSAG 90 (171)
T ss_dssp TCCCTTCEEEEECCSHHHHTTHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGSCEEEEEGGGCCCSCCSEEEECCCC-
T ss_pred CCCCCCCEEEEECCcHHHHHHHHHHcccCceeeeccchHHHHHHHHHHHhhccccchhhhccccccccceeeeccccc
Confidence 457889999999999999999999987778999998875221 111111 1112222 2356788888888854
|
| >d1lc0a1 c.2.1.3 (A:2-128,A:247-291) Biliverdin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Biliverdin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=94.94 E-value=0.0025 Score=57.30 Aligned_cols=61 Identities=20% Similarity=0.257 Sum_probs=41.6
Q ss_pred EEEEEecChhHHHHHHHhhcCC----CEEEEECCCCChhHHHHcCCcccCHHHHhc--cCCEEEEecCC
Q 007512 199 TLAVLGFGKVGSEVARRAKGLG----MHVIAHDPYAPADRARAIGVDLVSFDEAIA--TADFISLHMPL 261 (600)
Q Consensus 199 tiGIIGlG~IG~~vA~~l~~~g----~~V~~~d~~~~~~~a~~~g~~~~~l~ell~--~aDvV~l~~Pl 261 (600)
+|||||+|.+|+..++.++... ..+...+... +.....+....++++++. +.|+|++++|.
T Consensus 9 kv~iIG~G~~g~~h~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~e~l~~~~iD~V~I~tp~ 75 (172)
T d1lc0a1 9 GVVVVGVGRAGSVRLRDLKDPRSAAFLNLIGFVSRR--ELGSLDEVRQISLEDALRSQEIDVAYICSES 75 (172)
T ss_dssp EEEEECCSHHHHHHHHHHTSHHHHTTEEEEEEECSS--CCCEETTEEBCCHHHHHHCSSEEEEEECSCG
T ss_pred EEEEEcCCHHHHHHHHHHHhCCCCcEEEEEeccchH--HHHHhhccCcCCHHHHHhCCCcchhhhcccc
Confidence 7999999999999998887542 3444433222 111222344568999885 57899999993
|
| >d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO) species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=94.93 E-value=0.0091 Score=52.80 Aligned_cols=33 Identities=27% Similarity=0.448 Sum_probs=30.7
Q ss_pred CEEEEE-ecChhHHHHHHHhhcCCCEEEEECCCC
Q 007512 198 KTLAVL-GFGKVGSEVARRAKGLGMHVIAHDPYA 230 (600)
Q Consensus 198 ktiGII-GlG~IG~~vA~~l~~~g~~V~~~d~~~ 230 (600)
+||+|| |.|.||+.+|++|...|++|..++++.
T Consensus 1 Mki~vigGaG~iG~alA~~la~~G~~V~l~~R~~ 34 (212)
T d1jaya_ 1 MRVALLGGTGNLGKGLALRLATLGHEIVVGSRRE 34 (212)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSH
T ss_pred CEEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence 589999 899999999999999999999999875
|
| >d2qmwa2 d.58.18.3 (A:185-264) Prephenate dehydratase C-terminal domain {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: ACT-like family: Phenylalanine metabolism regulatory domain domain: Prephenate dehydratase C-terminal domain species: Staphylococcus aureus [TaxId: 1280]
Probab=94.81 E-value=0.033 Score=43.74 Aligned_cols=60 Identities=17% Similarity=0.236 Sum_probs=43.8
Q ss_pred EEEEecCCCCChhhHHhhhhcCCccccceEeeee-cCCCcEEEEEEeCCCCcHHHHHHHhc
Q 007512 529 ILCRQVDQPGMIGTVGSILGSENVNVSFMSVGRV-APRKHAVMAIGVDEQPRKETLKKIGD 588 (600)
Q Consensus 529 Liv~~~D~pG~Ia~V~~iL~~~~INIa~m~v~R~-~~g~~al~~i~~D~~~~~~~l~~l~~ 588 (600)
+++...|+||.+..+.+.++++|||+..++-.-. ..-++..-.++++....+.+.+.|++
T Consensus 5 ~i~~~~d~pGaL~~vL~~F~~~~INLt~IeSRP~~~~~~~Y~F~id~~g~~~~~~~~~l~~ 65 (80)
T d2qmwa2 5 LITPMHDKPGLLASVLNTFALFNINLSWIESRPLKTQLGMYRFFVQADSAITTDIKKVIAI 65 (80)
T ss_dssp EEEESSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTCEEEEEEESCCSCHHHHHHHHH
T ss_pred EEEeCCCCCCHHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEEEEecCCcHHHHHHHHH
Confidence 4555789999999999999999999999986322 22235677889988776643333333
|
| >d1otha2 c.78.1.1 (A:185-354) Ornithine transcarbamoylase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Ornithine transcarbamoylase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.80 E-value=0.1 Score=46.27 Aligned_cols=94 Identities=21% Similarity=0.207 Sum_probs=64.5
Q ss_pred eccCCEEEEEecCh-hHHHHHHHhhcCCCEEEEECCCC--C-hh-------HHHHcCCc---ccCHHHHhccCCEEEEec
Q 007512 194 SLVGKTLAVLGFGK-VGSEVARRAKGLGMHVIAHDPYA--P-AD-------RARAIGVD---LVSFDEAIATADFISLHM 259 (600)
Q Consensus 194 ~l~gktiGIIGlG~-IG~~vA~~l~~~g~~V~~~d~~~--~-~~-------~a~~~g~~---~~~l~ell~~aDvV~l~~ 259 (600)
+|.|+||++||=|+ +-.+++..+..||+++..+-|.. + .+ .+.+.|.. ..++++.+..+|+|..-.
T Consensus 1 sl~gl~I~~vGD~~nV~~Sli~~~~~~g~~~~~~~P~~~~p~~~~~~~~~~~~~~~~~~i~~~~d~~~~~~~advi~~~~ 80 (170)
T d1otha2 1 SLKGLTLSWIGDGNNILHSIMMSAAKFGMHLQAATPKGYEPDASVTKLAEQYAKENGTKLLLTNDPLEAAHGGNVLITDT 80 (170)
T ss_dssp CCTTCEEEEESCSSHHHHHHHTTTGGGTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCCEEEESCHHHHHTTCSEEEECC
T ss_pred CCCCCEEEEEcCchhHHHHHHHHHHHcCCEEEEEeccccCCchHHHHHHHHHHhccCCEEEEEcCHHHHHhhhhheeeec
Confidence 47899999999764 55667777778899999887753 1 11 12233432 237999999999999876
Q ss_pred CCCcc------------ccccccHhHhccCCCceEEEEcc
Q 007512 260 PLTPA------------TSKVLNDETFGKMKKGVRIINVA 287 (600)
Q Consensus 260 Pl~~~------------t~~li~~~~l~~mk~gailvNva 287 (600)
..... ....++.+.+..++++++|.-+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~MHpl 120 (170)
T d1otha2 81 WISMGREEEKKKRLQAFQGYQVTMKTAKVAASDWTFLHCL 120 (170)
T ss_dssp SSCTTCGGGHHHHHHHTTTCCBCHHHHHTSCTTCEEEECS
T ss_pred eecccchhhhHHHHHHHhhhhhhhhhhhccCCceEEecCC
Confidence 54321 11335666777788888888875
|
| >d1vlva2 c.78.1.1 (A:153-313) Ornithine transcarbamoylase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Ornithine transcarbamoylase species: Thermotoga maritima [TaxId: 2336]
Probab=94.53 E-value=0.15 Score=44.84 Aligned_cols=93 Identities=18% Similarity=0.216 Sum_probs=62.3
Q ss_pred ccCCEEEEEec--ChhHHHHHHHhhcCCCEEEEECCCC--C-hh-------HHHHcCCc---ccCHHHHhccCCEEEEec
Q 007512 195 LVGKTLAVLGF--GKVGSEVARRAKGLGMHVIAHDPYA--P-AD-------RARAIGVD---LVSFDEAIATADFISLHM 259 (600)
Q Consensus 195 l~gktiGIIGl--G~IG~~vA~~l~~~g~~V~~~d~~~--~-~~-------~a~~~g~~---~~~l~ell~~aDvV~l~~ 259 (600)
|.|++|++||= .++-.++...+..||+++..+-|.. + .. .+.+.+.. ..++++.++.+|+|..-.
T Consensus 1 l~g~ki~~vGD~~nnV~~Sli~~~~~~g~~i~~~~P~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~ai~~aDviyt~~ 80 (161)
T d1vlva2 1 LKGVKVVFMGDTRNNVATSLMIACAKMGMNFVACGPEELKPRSDVFKRCQEIVKETDGSVSFTSNLEEALAGADVVYTDV 80 (161)
T ss_dssp STTCEEEEESCTTSHHHHHHHHHHHHTTCEEEEESCGGGCCCHHHHHHHHHHHHHHCCEEEEESCHHHHHTTCSEEEECC
T ss_pred CCCCEEEEEcCCccHHHHHHHHHHHHcCCEEEEecchhhhhhhhHHHHHHHHHhhcCCceEEEecHHHhhhhhhheeccc
Confidence 57999999994 5799999999999999999988743 2 21 12233332 237999999999998855
Q ss_pred CCCcc-------------ccccccHhHhccCCCceEEEEcc
Q 007512 260 PLTPA-------------TSKVLNDETFGKMKKGVRIINVA 287 (600)
Q Consensus 260 Pl~~~-------------t~~li~~~~l~~mk~gailvNva 287 (600)
-.... -....+......+|++++|.-|.
T Consensus 81 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~MH~l 121 (161)
T d1vlva2 81 WASMGEEDKEKERMALLKPYQVNERVMEMTGKSETIFMHCL 121 (161)
T ss_dssp CC----------CHHHHGGGCBCHHHHHTTCCTTCEEEECS
T ss_pred eeeecccccchhhhccccceeeeehhhhcccCCCeeEecCC
Confidence 42210 01122333344577888888876
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=94.42 E-value=0.013 Score=52.08 Aligned_cols=87 Identities=23% Similarity=0.206 Sum_probs=58.5
Q ss_pred cCCEEEEEec-ChhHHHHHHHhhcCC-CEEEEECCCC-ChhHHHHcCCccc------CH-HHHh-----ccCCEEEEecC
Q 007512 196 VGKTLAVLGF-GKVGSEVARRAKGLG-MHVIAHDPYA-PADRARAIGVDLV------SF-DEAI-----ATADFISLHMP 260 (600)
Q Consensus 196 ~gktiGIIGl-G~IG~~vA~~l~~~g-~~V~~~d~~~-~~~~a~~~g~~~~------~l-~ell-----~~aDvV~l~~P 260 (600)
.|.+|.|+|. |.+|...++.++..| .+|++.+++. ..+.+++.|...+ ++ +++. ...|+++-|+.
T Consensus 27 ~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~~~~d~vid~~g 106 (170)
T d1jvba2 27 PTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGADYVINASMQDPLAEIRRITESKGVDAVIDLNN 106 (170)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTSCEEEEEESCC
T ss_pred CCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHHcCCceeeccCCcCHHHHHHHHhhcccchhhhcccc
Confidence 4789999995 999999999999887 5999999876 4566777776321 22 2222 22677777765
Q ss_pred CCccccccccHhHhccCCCceEEEEcc
Q 007512 261 LTPATSKVLNDETFGKMKKGVRIINVA 287 (600)
Q Consensus 261 l~~~t~~li~~~~l~~mk~gailvNva 287 (600)
.+.+. +..+..++++..++.+|
T Consensus 107 -~~~~~----~~a~~~l~~~G~iv~~G 128 (170)
T d1jvba2 107 -SEKTL----SVYPKALAKQGKYVMVG 128 (170)
T ss_dssp -CHHHH----TTGGGGEEEEEEEEECC
T ss_pred -cchHH----HhhhhhcccCCEEEEec
Confidence 22221 23355677777777775
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.26 E-value=0.019 Score=51.28 Aligned_cols=46 Identities=20% Similarity=0.328 Sum_probs=37.8
Q ss_pred cCCEEEEEec-ChhHHHHHHHhhcCCCEEEEECCCC-ChhHHHHcCCc
Q 007512 196 VGKTLAVLGF-GKVGSEVARRAKGLGMHVIAHDPYA-PADRARAIGVD 241 (600)
Q Consensus 196 ~gktiGIIGl-G~IG~~vA~~l~~~g~~V~~~d~~~-~~~~a~~~g~~ 241 (600)
.|.+|.|+|. |.+|....+.++.+|++|++.+.+. ..+.+++.|+.
T Consensus 28 ~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~~~~~~~~~~Ga~ 75 (174)
T d1yb5a2 28 AGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQNGAH 75 (174)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCS
T ss_pred CCCEEEEEeccccccccccccccccCcccccccccccccccccccCcc
Confidence 5889999995 9999999999999999999987654 34566677763
|
| >d1ml4a2 c.78.1.1 (A:152-308) Aspartate carbamoyltransferase catalytic subunit {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Aspartate carbamoyltransferase catalytic subunit species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=94.18 E-value=0.095 Score=45.83 Aligned_cols=66 Identities=15% Similarity=0.247 Sum_probs=51.1
Q ss_pred ccCCEEEEEec---ChhHHHHHHHhhcCCCEEEEECCCC--Ch----hHHHHcCCc---ccCHHHHhccCCEEEEecC
Q 007512 195 LVGKTLAVLGF---GKVGSEVARRAKGLGMHVIAHDPYA--PA----DRARAIGVD---LVSFDEAIATADFISLHMP 260 (600)
Q Consensus 195 l~gktiGIIGl---G~IG~~vA~~l~~~g~~V~~~d~~~--~~----~~a~~~g~~---~~~l~ell~~aDvV~l~~P 260 (600)
|.|+||+|||= +++..|++..+..||+++..+.|.. .. ..+.+.+.. ..++++.++.+|+|..-.-
T Consensus 2 l~gl~i~~vGD~~~srV~~Sli~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~d~~~av~~aDvvy~~~~ 79 (157)
T d1ml4a2 2 IDGLKIGLLGDLKYGRTVHSLAEALTFYDVELYLISPELLRMPRHIVEELREKGMKVVETTTLEDVIGKLDVLYVTRI 79 (157)
T ss_dssp SSSEEEEEESCTTTCHHHHHHHHHGGGSCEEEEEECCGGGCCCHHHHHHHHHTTCCEEEESCTHHHHTTCSEEEECCC
T ss_pred cCCCEEEEEcCCccChHHHHHHHHHHhcCCcEEEEccchhhcchHHHHHHHhhcccceeecCHHHhhccCcEEEeecc
Confidence 67999999998 6899999999999999999988753 21 123334432 3489999999999887554
|
| >d1dlja3 c.26.3.1 (A:295-402) UDP-glucose dehydrogenase (UDPGDH), C-terminal (UDP-binding) domain {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain family: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain domain: UDP-glucose dehydrogenase (UDPGDH), C-terminal (UDP-binding) domain species: Streptococcus pyogenes [TaxId: 1314]
Probab=94.06 E-value=0.024 Score=47.10 Aligned_cols=62 Identities=15% Similarity=0.093 Sum_probs=46.6
Q ss_pred CCEEEEEec----------ChhHHHHHHHhhcCCCEEEEECCCCChhHHHHcCCcc-cCHHHHhccCCEEEEec
Q 007512 197 GKTLAVLGF----------GKVGSEVARRAKGLGMHVIAHDPYAPADRARAIGVDL-VSFDEAIATADFISLHM 259 (600)
Q Consensus 197 gktiGIIGl----------G~IG~~vA~~l~~~g~~V~~~d~~~~~~~a~~~g~~~-~~l~ell~~aDvV~l~~ 259 (600)
.|+|||+|+ ..-.-.+.+.|+..|++|.+|||+..... ...+... .++++++..||+|++..
T Consensus 15 ~k~I~ilGl~fK~n~dD~R~Sp~i~ii~~L~~~g~~v~iyDP~v~~~~-~~~~~~~~~~l~~~~~~sDiII~~~ 87 (108)
T d1dlja3 15 VKVVGVYRLIMKSNSDNFRESAIKDVIDILKSKDIKIIIYEPMLNKLE-SEDQSVLVNDLENFKKQANIIVTNR 87 (108)
T ss_dssp SCEEEEECCCSSTTCSCCTTCHHHHHHHHHHTSSCEEEEECTTCSCCC-TTCCSEECCCHHHHHHHCSEEECSS
T ss_pred CCEEEEEEEEECCCCcchhhhhHHHHHHHHhccccceeeecCCcChhH-hccCCEEEeCHHHHHhhCCEEEEcC
Confidence 468999998 45667899999999999999999984321 1233333 38999999999876543
|
| >d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Haloarcula marismortui [TaxId: 2238]
Probab=93.92 E-value=0.079 Score=46.03 Aligned_cols=88 Identities=16% Similarity=0.194 Sum_probs=53.9
Q ss_pred CEEEEEe-cChhHHHHHHHhhcCC--CEEEEECCCCChhH----HHHc----CC----c--ccCHHHHhccCCEEEEecC
Q 007512 198 KTLAVLG-FGKVGSEVARRAKGLG--MHVIAHDPYAPADR----ARAI----GV----D--LVSFDEAIATADFISLHMP 260 (600)
Q Consensus 198 ktiGIIG-lG~IG~~vA~~l~~~g--~~V~~~d~~~~~~~----a~~~----g~----~--~~~l~ell~~aDvV~l~~P 260 (600)
.+|+||| .|.+|+.+|-.+...+ -++..||.....+. +.++ .+ . ..+. +.++.||+|+++.-
T Consensus 1 sKV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di~~~~~~~~g~a~Dl~~~~~~~~~~~i~~~~~-~~~~~aDiVvitaG 79 (142)
T d1o6za1 1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQGGY-EDTAGSDVVVITAG 79 (142)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEEECCG-GGGTTCSEEEECCC
T ss_pred CeEEEECCCCcHHHHHHHHHHhCCCCCEEEEEecCCcccccceeecchhhcccccCCceEeeCCH-HHhhhcCEEEEecc
Confidence 3899999 6999999999998555 48999996432211 1111 11 1 1133 45689999999864
Q ss_pred CCcccccc-----c--cH-------hHhccCCCceEEEEcc
Q 007512 261 LTPATSKV-----L--ND-------ETFGKMKKGVRIINVA 287 (600)
Q Consensus 261 l~~~t~~l-----i--~~-------~~l~~mk~gailvNva 287 (600)
. +...++ + |. +.+....|+++++.++
T Consensus 80 ~-~~~~g~~R~dl~~~N~~I~~~i~~~i~~~~p~~i~ivvt 119 (142)
T d1o6za1 80 I-PRQPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISLTTS 119 (142)
T ss_dssp C-CCCTTCCHHHHHHHHHHHHHHHHHHHHTTCSCCEEEECC
T ss_pred c-ccccCCchhhHHHHHHHHHHHHHHHHHhcCCCceEEEec
Confidence 2 222222 1 11 1244467888998884
|
| >d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: 6-phospho-beta-glucosidase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=93.85 E-value=0.088 Score=46.94 Aligned_cols=65 Identities=20% Similarity=0.184 Sum_probs=42.8
Q ss_pred CEEEEEecChhH--HHHHHHhhc---CC-CEEEEECCCCChhHHH-----------HcCCc-----ccCHHHHhccCCEE
Q 007512 198 KTLAVLGFGKVG--SEVARRAKG---LG-MHVIAHDPYAPADRAR-----------AIGVD-----LVSFDEAIATADFI 255 (600)
Q Consensus 198 ktiGIIGlG~IG--~~vA~~l~~---~g-~~V~~~d~~~~~~~a~-----------~~g~~-----~~~l~ell~~aDvV 255 (600)
.+|.|||.|.+| ..++..++. +. -++..+|......++. ..+.. ..+..+.++.||+|
T Consensus 2 ~KI~iIGaGs~~~~~~~~~l~~~~~~~~~~eI~L~Di~e~~~~~~~~d~~~~~~~~~~~~~~~~~~~td~~~al~gaDvV 81 (169)
T d1s6ya1 2 LKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGVPIEIHLTLDRRRALDGADFV 81 (169)
T ss_dssp EEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCSEE
T ss_pred cEEEEECCChhhHHHHHHHHHHhccccCCCEEEEEcCCccHHHHHHHHHHHHHHHHhcCCCceeeecCCchhhcCCCCEE
Confidence 479999999776 445555543 32 4899999865332111 12222 23678899999999
Q ss_pred EEecCCC
Q 007512 256 SLHMPLT 262 (600)
Q Consensus 256 ~l~~Pl~ 262 (600)
+++....
T Consensus 82 v~ta~~~ 88 (169)
T d1s6ya1 82 TTQFRVG 88 (169)
T ss_dssp EECCCTT
T ss_pred EEccccC
Confidence 9998743
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=93.76 E-value=0.088 Score=46.93 Aligned_cols=47 Identities=28% Similarity=0.367 Sum_probs=40.4
Q ss_pred ccCCEEEEEecChhHHHHHHHhhcCCC-EEEEECCCC-ChhHHHHcCCc
Q 007512 195 LVGKTLAVLGFGKVGSEVARRAKGLGM-HVIAHDPYA-PADRARAIGVD 241 (600)
Q Consensus 195 l~gktiGIIGlG~IG~~vA~~l~~~g~-~V~~~d~~~-~~~~a~~~g~~ 241 (600)
-.|.+|.|+|.|.+|...++.++..|. +|++.|+.. ..+.++++|..
T Consensus 26 ~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~lGa~ 74 (174)
T d1p0fa2 26 TPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGAT 74 (174)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTCS
T ss_pred CCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHHcCCc
Confidence 348899999999999999999999885 899999877 56778888864
|
| >d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: 6-phospho-beta-glucosidase species: Thermotoga maritima [TaxId: 2336]
Probab=93.68 E-value=0.045 Score=48.60 Aligned_cols=64 Identities=16% Similarity=0.137 Sum_probs=41.9
Q ss_pred CEEEEEecChhHHHHHHH--hh---cC-CCEEEEECCCCChhH-HHH-------cCCc---ccCHHHHhccCCEEEEecC
Q 007512 198 KTLAVLGFGKVGSEVARR--AK---GL-GMHVIAHDPYAPADR-ARA-------IGVD---LVSFDEAIATADFISLHMP 260 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~--l~---~~-g~~V~~~d~~~~~~~-a~~-------~g~~---~~~l~ell~~aDvV~l~~P 260 (600)
.+|.|||.|.+|...+-. ++ .+ .-++..+|.+..... +.. .... ..+.++.++.||+|++++-
T Consensus 1 mKIaiIGaGs~g~~~~~~~l~~~~~~~~~~el~L~Did~~k~~~~~d~~~~~~~~~~~~~~t~~~~~~l~~aDvVVita~ 80 (162)
T d1up7a1 1 MRIAVIGGGSSYTPELVKGLLDISEDVRIDEVIFYDIDEEKQKIVVDFVKRLVKDRFKVLISDTFEGAVVDAKYVIFQFR 80 (162)
T ss_dssp CEEEEETTTCTTHHHHHHHHHHHTTTSCCCEEEEECSCHHHHHHHHHHHHHHHTTSSEEEECSSHHHHHTTCSEEEECCC
T ss_pred CEEEEECCCHHHHHHHHHHHHhcccccCccEEEEEecCcHHHHHHHHHHHhhhccCceEEEecCcccccCCCCEEEEecc
Confidence 479999999988776633 22 23 358999998653211 111 1111 1367899999999999875
Q ss_pred C
Q 007512 261 L 261 (600)
Q Consensus 261 l 261 (600)
.
T Consensus 81 ~ 81 (162)
T d1up7a1 81 P 81 (162)
T ss_dssp T
T ss_pred c
Confidence 3
|
| >d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: MJ0490, lactate/malate dehydrogenase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=93.66 E-value=0.034 Score=48.68 Aligned_cols=62 Identities=15% Similarity=0.193 Sum_probs=42.8
Q ss_pred CEEEEEe-cChhHHHHHHHhhcCCC--EEEEECCCCChhHHH----Hc-------C--Ccc----cCHHHHhccCCEEEE
Q 007512 198 KTLAVLG-FGKVGSEVARRAKGLGM--HVIAHDPYAPADRAR----AI-------G--VDL----VSFDEAIATADFISL 257 (600)
Q Consensus 198 ktiGIIG-lG~IG~~vA~~l~~~g~--~V~~~d~~~~~~~a~----~~-------g--~~~----~~l~ell~~aDvV~l 257 (600)
++|+||| .|.+|+.+|..+...+. ++..||.......++ ++ . ... .+-.+.+++||+|++
T Consensus 1 MKV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~d~~~l~~aDvVVi 80 (145)
T d1hyea1 1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANIYVESDENLRIIDESDVVII 80 (145)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHHTTSCCCCEEEEEETTCGGGGTTCSEEEE
T ss_pred CEEEEECCCChHHHHHHHHHHhCCcccccccccchhhhHhhhcccccchhcccccccCCccccCCcchHHHhccceEEEE
Confidence 4799999 59999999999987774 999999765322111 11 1 110 122367889999999
Q ss_pred ec
Q 007512 258 HM 259 (600)
Q Consensus 258 ~~ 259 (600)
+.
T Consensus 81 tA 82 (145)
T d1hyea1 81 TS 82 (145)
T ss_dssp CC
T ss_pred ec
Confidence 84
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=93.39 E-value=0.043 Score=50.12 Aligned_cols=65 Identities=28% Similarity=0.326 Sum_probs=48.5
Q ss_pred cCCEEEEEecChhHHHHHHHhhcCCC-EEEEECCCC-ChhHHHHcCCccc------CHH----HHh--ccCCEEEEecC
Q 007512 196 VGKTLAVLGFGKVGSEVARRAKGLGM-HVIAHDPYA-PADRARAIGVDLV------SFD----EAI--ATADFISLHMP 260 (600)
Q Consensus 196 ~gktiGIIGlG~IG~~vA~~l~~~g~-~V~~~d~~~-~~~~a~~~g~~~~------~l~----ell--~~aDvV~l~~P 260 (600)
.|.+|.|+|.|.||...+..++.+|. +|++.|+.. ..+.+++.|...+ ++. ++. ..+|+++-++.
T Consensus 25 ~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~Ga~~~~~~~~~~~~~~i~~~t~g~g~D~vid~vG 103 (195)
T d1kola2 25 PGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQGFEIADLSLDTPLHEQIAALLGEPEVDCAVDAVG 103 (195)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCEEEETTSSSCHHHHHHHHHSSSCEEEEEECCC
T ss_pred CCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhccccEEEeCCCcCHHHHHHHHhCCCCcEEEEECcc
Confidence 48899999999999999999998876 899999876 4577888887432 222 222 23788887765
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=93.28 E-value=0.099 Score=46.28 Aligned_cols=45 Identities=33% Similarity=0.489 Sum_probs=38.4
Q ss_pred cCCEEEEEecChhHHHHHHHhhcCC-CEEEEECCCC-ChhHHHHcCC
Q 007512 196 VGKTLAVLGFGKVGSEVARRAKGLG-MHVIAHDPYA-PADRARAIGV 240 (600)
Q Consensus 196 ~gktiGIIGlG~IG~~vA~~l~~~g-~~V~~~d~~~-~~~~a~~~g~ 240 (600)
.|.+|.|+|.|-+|...+..++.+| .+|++.|++. ..+.+++.|.
T Consensus 28 ~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~Ga 74 (176)
T d2jhfa2 28 QGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGA 74 (176)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTC
T ss_pred CCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHHhCC
Confidence 5889999999999999999999997 5999999887 4566677775
|
| >d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Rck domain from putative potassium channel Kch species: Escherichia coli [TaxId: 562]
Probab=93.26 E-value=0.035 Score=48.30 Aligned_cols=63 Identities=11% Similarity=0.094 Sum_probs=44.4
Q ss_pred EEEEEecChhHHHHHHHhhcCCCEEEEECCCCCh-----hHHHHcCCccc-----C---HH-HHhccCCEEEEecCC
Q 007512 199 TLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPA-----DRARAIGVDLV-----S---FD-EAIATADFISLHMPL 261 (600)
Q Consensus 199 tiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~~-----~~a~~~g~~~~-----~---l~-ell~~aDvV~l~~Pl 261 (600)
.+-|+|+|.+|+.+++.|...|.+|++.|..+.. +.....|+..+ + |+ .-+.+||.|+++++.
T Consensus 5 HiII~G~g~~g~~l~~~L~~~~~~v~vId~d~~~~~~~~~~~~~~~~~vi~Gd~~d~~~L~~a~i~~a~~vi~~~~~ 81 (153)
T d1id1a_ 5 HFIVCGHSILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLGDNADVIPGDSNDSSVLKKAGIDRCRAILALSDN 81 (153)
T ss_dssp CEEEECCSHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHCTTCEEEESCTTSHHHHHHHTTTTCSEEEECSSC
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCEEEEeccchhHHHHHHHhhcCCcEEEEccCcchHHHHHhccccCCEEEEcccc
Confidence 4899999999999999999999999998876521 12223355322 2 22 235678888888774
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=93.15 E-value=0.031 Score=49.85 Aligned_cols=45 Identities=20% Similarity=0.284 Sum_probs=36.1
Q ss_pred cCCEEEEEe-cChhHHHHHHHhhcCCCEEEEECCCC-ChhHHHHcCC
Q 007512 196 VGKTLAVLG-FGKVGSEVARRAKGLGMHVIAHDPYA-PADRARAIGV 240 (600)
Q Consensus 196 ~gktiGIIG-lG~IG~~vA~~l~~~g~~V~~~d~~~-~~~~a~~~g~ 240 (600)
.|.+|.|.| .|.+|...++.++.+|++|++.+.+. ..+.+++.|+
T Consensus 25 ~g~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~~~~~~~l~~~Ga 71 (183)
T d1pqwa_ 25 PGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSRLGV 71 (183)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHTTCC
T ss_pred CCCEEEEECCCCCcccccchhhccccccceeeecccccccccccccc
Confidence 478999988 59999999999999999999887654 3455566665
|
| >d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Potassium channel-related protein MthK species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]
Probab=93.01 E-value=0.034 Score=47.09 Aligned_cols=64 Identities=11% Similarity=0.243 Sum_probs=43.2
Q ss_pred CEEEEEecChhHHHHHHHhhcCCCEEEEECCCCC-hhHHHHcCCccc-----C---HHH-HhccCCEEEEecCCCc
Q 007512 198 KTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAP-ADRARAIGVDLV-----S---FDE-AIATADFISLHMPLTP 263 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~-~~~a~~~g~~~~-----~---l~e-ll~~aDvV~l~~Pl~~ 263 (600)
|.+-|+|+|.+|+.+++.|++.+. .+.|.... .+.....|+..+ + |.+ -+.+|+.++++.+...
T Consensus 1 kHivI~G~g~~g~~l~~~L~~~~i--~vi~~d~~~~~~~~~~~~~~i~Gd~~~~~~L~~a~i~~A~~vi~~~~~d~ 74 (129)
T d2fy8a1 1 RHVVICGWSESTLECLRELRGSEV--FVLAEDENVRKKVLRSGANFVHGDPTRVSDLEKANVRGARAVIVNLESDS 74 (129)
T ss_dssp CCEEEESCCHHHHHHHHTSCGGGE--EEEESCTTHHHHHHHTTCEEEESCTTSHHHHHHTTCTTCSEEEECCSSHH
T ss_pred CEEEEECCCHHHHHHHHHHcCCCC--EEEEcchHHHHHHHhcCccccccccCCHHHHHHhhhhcCcEEEEeccchh
Confidence 457899999999999999986654 44555442 344556676432 2 222 2678999999887433
|
| >d1y81a1 c.2.1.8 (A:6-121) Hypothetical protein PF0725 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein PF0725 species: Pyrococcus furiosus [TaxId: 2261]
Probab=92.80 E-value=0.072 Score=44.61 Aligned_cols=98 Identities=18% Similarity=0.240 Sum_probs=66.9
Q ss_pred CEEEEEec----ChhHHHHHHHhhcCCCEEEEECCCCChhHHHHcCCcc-cCHHHHhccCCEEEEecCCCccccccccHh
Q 007512 198 KTLAVLGF----GKVGSEVARRAKGLGMHVIAHDPYAPADRARAIGVDL-VSFDEAIATADFISLHMPLTPATSKVLNDE 272 (600)
Q Consensus 198 ktiGIIGl----G~IG~~vA~~l~~~g~~V~~~d~~~~~~~a~~~g~~~-~~l~ell~~aDvV~l~~Pl~~~t~~li~~~ 272 (600)
|+|+|||. |+.|..+.+.|+.+|++|+.++|.... =.|... -+++++=..-|++++++| .+.+..++.+
T Consensus 2 KsIAVvGaS~~~~k~g~~v~~~L~~~g~~V~pVnP~~~~----i~G~~~y~sl~~lp~~~D~vvi~vp-~~~~~~~l~~- 75 (116)
T d1y81a1 2 RKIALVGASKNPAKYGNIILKDLLSKGFEVLPVNPNYDE----IEGLKCYRSVRELPKDVDVIVFVVP-PKVGLQVAKE- 75 (116)
T ss_dssp CEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSE----ETTEECBSSGGGSCTTCCEEEECSC-HHHHHHHHHH-
T ss_pred cEEEEEcccCCCCCcHHHHHHHHHHCCCEEEEEcccccc----ccCccccccchhccccceEEEEEeC-HHHHHHHHHH-
Confidence 68999994 688999999999999999999987521 135543 478888788899999999 4445555543
Q ss_pred HhccCCCceEEEEccCCccccHHHHHHhHhcCCc
Q 007512 273 TFGKMKKGVRIINVARGGVIDEEALVRALDSGRV 306 (600)
Q Consensus 273 ~l~~mk~gailvNvarg~ivde~aL~~aL~~g~i 306 (600)
.. .+...++++.-+ ..++ ++.+.+++..+
T Consensus 76 ~~-~~g~k~v~~~~g---~~~~-~~~~~a~~~gi 104 (116)
T d1y81a1 76 AV-EAGFKKLWFQPG---AESE-EIRRFLEKAGV 104 (116)
T ss_dssp HH-HTTCCEEEECTT---SCCH-HHHHHHHHHTC
T ss_pred HH-hcCCceEEeccc---hhhH-HHHHHHHHcCC
Confidence 22 345556777643 3344 34555555433
|
| >d2at2a2 c.78.1.1 (A:145-295) Aspartate carbamoyltransferase catalytic subunit {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Aspartate carbamoyltransferase catalytic subunit species: Bacillus subtilis [TaxId: 1423]
Probab=92.58 E-value=0.06 Score=47.25 Aligned_cols=61 Identities=28% Similarity=0.348 Sum_probs=46.9
Q ss_pred cCCEEEEEec---ChhHHHHHHHhhcCCCEEEEECCCCChhHHHHcCCc-ccCHHHHhccCCEEEEe
Q 007512 196 VGKTLAVLGF---GKVGSEVARRAKGLGMHVIAHDPYAPADRARAIGVD-LVSFDEAIATADFISLH 258 (600)
Q Consensus 196 ~gktiGIIGl---G~IG~~vA~~l~~~g~~V~~~d~~~~~~~a~~~g~~-~~~l~ell~~aDvV~l~ 258 (600)
.|.+|++||= +++..|++..+..||+++....|..-... ...+. ..++++.++.+|+|..-
T Consensus 2 ~gl~i~~vGD~~~srv~~Sl~~~~~~~g~~~~i~~P~~~~~~--~~~~~~~~~~~ea~~~aDviy~~ 66 (151)
T d2at2a2 2 KGLTVSIHGDIKHSRVARSNAEVLTRLGARVLFSGPSEWQDE--ENTFGTYVSMDEAVESSDVVMLL 66 (151)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHcCCcccccCCchhhcc--ccceeEEEechhccccCceeeee
Confidence 5899999997 68999999999999999988877541111 12222 34799999999999764
|
| >d2nvwa1 c.2.1.3 (A:2-154,A:374-457) Galactose/lactose metabolism regulatory protein GAL80 {Yeast (Kluyveromyces lactis) [TaxId: 28985]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Galactose/lactose metabolism regulatory protein GAL80 species: Yeast (Kluyveromyces lactis) [TaxId: 28985]
Probab=92.39 E-value=0.083 Score=49.50 Aligned_cols=64 Identities=11% Similarity=0.165 Sum_probs=43.5
Q ss_pred CCEEEEEecChhH----HHHHHHhhcC--CCEEEE-ECCCCC--hhHHHHcCCc----ccCHHHHhc--cCCEEEEecC
Q 007512 197 GKTLAVLGFGKVG----SEVARRAKGL--GMHVIA-HDPYAP--ADRARAIGVD----LVSFDEAIA--TADFISLHMP 260 (600)
Q Consensus 197 gktiGIIGlG~IG----~~vA~~l~~~--g~~V~~-~d~~~~--~~~a~~~g~~----~~~l~ell~--~aDvV~l~~P 260 (600)
-.+|||||+|.+| +.-...++.. ++++.+ +|+... ...+...++. +.++++++. +-|+|++|+|
T Consensus 16 ~irvgiIG~G~~~~~~~~~h~~ai~~~~~~~~ivav~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~iD~V~i~tp 94 (237)
T d2nvwa1 16 PIRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYNPTLKSSLQTIEQLQLKHATGFDSLESFAQYKDIDMIVVSVK 94 (237)
T ss_dssp CEEEEEECCCSTTSHHHHTHHHHHHHTTTTEEEEEEECSCHHHHHHHHHHTTCTTCEEESCHHHHHHCTTCSEEEECSC
T ss_pred CeEEEEEecCccccHHHHHHHHHHHhcCCCeEEEEEEcCCHHHHHHHHHhcccccceeecchhhcccccccceeeccCC
Confidence 3589999999754 4444456543 688885 788762 2334555553 358999885 5789999998
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=92.29 E-value=0.13 Score=45.20 Aligned_cols=46 Identities=33% Similarity=0.429 Sum_probs=38.4
Q ss_pred cCCEEEEEecChhHHHHHHHhhcCCC-EEEEECCCC-ChhHHHHcCCc
Q 007512 196 VGKTLAVLGFGKVGSEVARRAKGLGM-HVIAHDPYA-PADRARAIGVD 241 (600)
Q Consensus 196 ~gktiGIIGlG~IG~~vA~~l~~~g~-~V~~~d~~~-~~~~a~~~g~~ 241 (600)
.|.+|.|+|.|-+|...++.++.+|. .|++.|++. ..+.++++|..
T Consensus 28 ~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~lGa~ 75 (176)
T d2fzwa2 28 PGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGAT 75 (176)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTCS
T ss_pred CCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHHhCCc
Confidence 48899999999999999999999985 788888876 45667788863
|
| >d1ekxa2 c.78.1.1 (A:151-310) Aspartate carbamoyltransferase catalytic subunit {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Aspartate carbamoyltransferase catalytic subunit species: Escherichia coli [TaxId: 562]
Probab=92.26 E-value=0.24 Score=43.34 Aligned_cols=93 Identities=16% Similarity=0.204 Sum_probs=60.7
Q ss_pred ccCCEEEEEec---ChhHHHHHHHhhcCC-CEEEEECCCC--Ch----hHHHHcCCc---ccCHHHHhccCCEEEEecCC
Q 007512 195 LVGKTLAVLGF---GKVGSEVARRAKGLG-MHVIAHDPYA--PA----DRARAIGVD---LVSFDEAIATADFISLHMPL 261 (600)
Q Consensus 195 l~gktiGIIGl---G~IG~~vA~~l~~~g-~~V~~~d~~~--~~----~~a~~~g~~---~~~l~ell~~aDvV~l~~Pl 261 (600)
+.|.+|++||= |++..++...+..|| +.+..+.|.. +. ..+...|.. ..+++++++++|+|..-...
T Consensus 2 l~gl~i~~vGD~~nsrv~~Sli~~l~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~d~~~a~~~aDvvy~~~~~ 81 (160)
T d1ekxa2 2 LDNLHVAMVGDLKYGRTVHSLTQALAKFDGNRFYFIAPDALAMPQYILDMLDEKGIAWSLHSSIEEVMAEVDILYMTRVQ 81 (160)
T ss_dssp SSSCEEEEESCTTTCHHHHHHHHHHTTSSSCEEEEECCGGGCCCHHHHHHHHHTTCCEEECSCSTTTGGGCSEEEECCCC
T ss_pred CCCCEEEEEcCCCccHHHHHHHHHHHHcCCCeEEeeccchhhhhHHHHHHHhhhccccccccCHHHHhCcCceEEeeccc
Confidence 67999999996 679999999999996 5666666543 11 234445543 23789999999999864332
Q ss_pred Ccc----------ccccccHhHhccCCCceEEEEcc
Q 007512 262 TPA----------TSKVLNDETFGKMKKGVRIINVA 287 (600)
Q Consensus 262 ~~~----------t~~li~~~~l~~mk~gailvNva 287 (600)
... ....++.+.+..+++++++.-|.
T Consensus 82 ~e~~~~~~~~~~~~~~~~~~~~~~~a~~~~i~mHcL 117 (160)
T d1ekxa2 82 KERLDPSEYANVKAQFVLRASDLHNAKANMKVLHPL 117 (160)
T ss_dssp GGGCCGGGGGGCSCSCCBCGGGGTTCCTTCEEECCS
T ss_pred ccccchHHHHHHHHHhhccHHHHHhcCcceeeecCC
Confidence 110 11223455556666666666664
|
| >d1l7da2 c.23.12.2 (A:1-143,A:327-377) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Formate/glycerate dehydrogenase catalytic domain-like family: L-alanine dehydrogenase-like domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=92.24 E-value=0.21 Score=45.56 Aligned_cols=98 Identities=21% Similarity=0.395 Sum_probs=71.5
Q ss_pred HHHHHhhcCCCEEEEECC-----CCChhHHHHcCCccc-CHHHHhccCCEEE-EecCCCccccccccHhHhccCCCceEE
Q 007512 211 EVARRAKGLGMHVIAHDP-----YAPADRARAIGVDLV-SFDEAIATADFIS-LHMPLTPATSKVLNDETFGKMKKGVRI 283 (600)
Q Consensus 211 ~vA~~l~~~g~~V~~~d~-----~~~~~~a~~~g~~~~-~l~ell~~aDvV~-l~~Pl~~~t~~li~~~~l~~mk~gail 283 (600)
..++.|...|++|++=.- ..+.+...+.|+..+ +-++++.++|+|+ +..|...+ .+.+.+..||+|.++
T Consensus 21 ~~vkkl~~~G~~V~vE~gaG~~a~fsD~~Y~~aGA~i~~~~~~~~~~~diilkV~~P~~~e----~~~~ei~~lk~g~~l 96 (194)
T d1l7da2 21 EVVKKLVGLGFEVIVEQGAGVGASITDDALTAAGATIASTAAQALSQADVVWKVQRPMTAE----EGTDEVALIKEGAVL 96 (194)
T ss_dssp HHHHHHHHTTCEEEEETTTTGGGTCCHHHHHHTTCEEESSHHHHHSSCSEEEEEECCCCGG----GSCCGGGGSCTTCEE
T ss_pred HHHHHHHHCCCEEEEEcCcccccCCCHHHHHHhhhhcchhhhhhhhcccceeEecCCcccc----cchhHhhhccCceEE
Confidence 567888889999998532 225566778898876 5689999999887 44564432 234568889999999
Q ss_pred EEccCCccccHHHHHHhHhcCCceEEEEecc
Q 007512 284 INVARGGVIDEEALVRALDSGRVAQAALDVF 314 (600)
Q Consensus 284 vNvarg~ivde~aL~~aL~~g~i~ga~lDv~ 314 (600)
|..-- .....++.++|.+.++-..++|..
T Consensus 97 i~~l~--p~~~~~~~~~l~~~~it~~a~e~i 125 (194)
T d1l7da2 97 MCHLG--ALTNRPVVEALTKRKITAYAMELM 125 (194)
T ss_dssp EEECC--GGGCHHHHHHHHHTTCEEEEGGGC
T ss_pred EEecc--cccchhHHHHHHhcCceEEeeecc
Confidence 98753 345667888899998877766654
|
| >d1iuka_ c.2.1.8 (A:) Hypothetical protein TT1466 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein TT1466 species: Thermus thermophilus [TaxId: 274]
Probab=92.08 E-value=0.077 Score=45.66 Aligned_cols=101 Identities=20% Similarity=0.308 Sum_probs=70.3
Q ss_pred cCCEEEEEec----ChhHHHHHHHhhcCCCEEEEECCCCChhHHHHcCCc-ccCHHHHhccCCEEEEecCCCcccccccc
Q 007512 196 VGKTLAVLGF----GKVGSEVARRAKGLGMHVIAHDPYAPADRARAIGVD-LVSFDEAIATADFISLHMPLTPATSKVLN 270 (600)
Q Consensus 196 ~gktiGIIGl----G~IG~~vA~~l~~~g~~V~~~d~~~~~~~a~~~g~~-~~~l~ell~~aDvV~l~~Pl~~~t~~li~ 270 (600)
.-|+|+|||. ++.|..+.+.|+.+|+++..|.|...... -.|.. +.++.++-..-|++++++| .+....++.
T Consensus 12 ~pksIAVVGaS~~~~k~g~~v~~~L~~~g~~~~~v~~~~~~~~--i~g~~~~~~l~~i~~~iD~v~v~~p-~~~v~~~v~ 88 (136)
T d1iuka_ 12 QAKTIAVLGAHKDPSRPAHYVPRYLREQGYRVLPVNPRFQGEE--LFGEEAVASLLDLKEPVDILDVFRP-PSALMDHLP 88 (136)
T ss_dssp HCCEEEEETCCSSTTSHHHHHHHHHHHTTCEEEEECGGGTTSE--ETTEECBSSGGGCCSCCSEEEECSC-HHHHTTTHH
T ss_pred CCCeEEEEeecCCCCCchHHHHHHHhcCCCCceEEEeccccce--eeceecccchhhccCCCceEEEecc-HHHHHHHHH
Confidence 4579999997 78999999999999999999988642111 12443 3478888778999999999 444556654
Q ss_pred HhHhccCCCceEEEEccCCccccHHHHHHhHhcC
Q 007512 271 DETFGKMKKGVRIINVARGGVIDEEALVRALDSG 304 (600)
Q Consensus 271 ~~~l~~mk~gailvNvarg~ivde~aL~~aL~~g 304 (600)
+. . .+...++++..| ..+++....+.+.|
T Consensus 89 ~~-~-~~g~k~i~~q~G---~~~~e~~~~a~~~G 117 (136)
T d1iuka_ 89 EV-L-ALRPGLVWLQSG---IRHPEFEKALKEAG 117 (136)
T ss_dssp HH-H-HHCCSCEEECTT---CCCHHHHHHHHHTT
T ss_pred HH-H-hhCCCeEEEecC---ccCHHHHHHHHHcC
Confidence 43 2 345567777643 34666555555555
|
| >d1dxha2 c.78.1.1 (A:151-335) Ornithine transcarbamoylase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Ornithine transcarbamoylase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=91.94 E-value=0.31 Score=43.81 Aligned_cols=94 Identities=19% Similarity=0.191 Sum_probs=65.0
Q ss_pred eccCCEEEEEecC--hhHHHHHHHhhcCCCEEEEECCCC---Chh-------HHHHcCCc---ccCHHHHhccCCEEEEe
Q 007512 194 SLVGKTLAVLGFG--KVGSEVARRAKGLGMHVIAHDPYA---PAD-------RARAIGVD---LVSFDEAIATADFISLH 258 (600)
Q Consensus 194 ~l~gktiGIIGlG--~IG~~vA~~l~~~g~~V~~~d~~~---~~~-------~a~~~g~~---~~~l~ell~~aDvV~l~ 258 (600)
.|.|.||++||=| ++..+++..+..||+++....|.. +.+ .+...|.. ..++++.++.+|+|..-
T Consensus 2 ~l~~lkia~vGD~~nnV~~Sli~~~~~~G~~l~l~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~eai~~aDvVyt~ 81 (185)
T d1dxha2 2 PLHDISYAYLGDARNNMGNSLLLIGAKLGMDVRIAAPKALWPHDEFVAQCKKFAEESGAKLTLTEDPKEAVKGVDFVHTD 81 (185)
T ss_dssp CGGGCEEEEESCCSSHHHHHHHHHHHHTTCEEEEECCGGGSCCHHHHHHHHHHHHHHTCEEEEESCHHHHTTTCSEEEEC
T ss_pred CCCCCEEEEEcCCcchHHHHHHHHHHHcCCEEEEEccHHHHhhhHHHHHHHHHhhccCCeEEEEeChhhccccccEEEee
Confidence 4789999999954 899999999999999999998843 221 12233433 23799999999999875
Q ss_pred cCCCc--cc------------cccccHhHhccCCCceEEEEcc
Q 007512 259 MPLTP--AT------------SKVLNDETFGKMKKGVRIINVA 287 (600)
Q Consensus 259 ~Pl~~--~t------------~~li~~~~l~~mk~gailvNva 287 (600)
.=... .. ..+.+......+|+++++.-|.
T Consensus 82 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ak~~~i~MH~L 124 (185)
T d1dxha2 82 VWVSMGEPVEAWGERIKELLPYQVNMEIMKATGNPRAKFMHCL 124 (185)
T ss_dssp CCSCSSSCGGGCHHHHHHHGGGCBCHHHHHTTCCSSCEEEECS
T ss_pred hhhhhhhhhhhHHHHHHHhhhheeccHHHHhhcCCCEEEEcCC
Confidence 43111 00 1222333445678999999987
|
| >d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=91.73 E-value=0.092 Score=45.83 Aligned_cols=104 Identities=15% Similarity=0.189 Sum_probs=57.3
Q ss_pred CEEEEEec-ChhHHHHHHHhhc---C-CCEEEEECCCCChh--H-HHHcCCccc-C-HHHHhccCCEEEEecCCCccccc
Q 007512 198 KTLAVLGF-GKVGSEVARRAKG---L-GMHVIAHDPYAPAD--R-ARAIGVDLV-S-FDEAIATADFISLHMPLTPATSK 267 (600)
Q Consensus 198 ktiGIIGl-G~IG~~vA~~l~~---~-g~~V~~~d~~~~~~--~-a~~~g~~~~-~-l~ell~~aDvV~l~~Pl~~~t~~ 267 (600)
|+|||||. |.+|+.+.++|.. | -.++..+....... . ......... . -.+.+..+|++++|+|... ...
T Consensus 2 kkVaIvGATG~VGqeli~~Ll~~~~~p~~~l~~~~ss~s~g~~~~~~~~~~~~~~~~~~~~~~~~DivF~a~~~~~-s~~ 80 (146)
T d1t4ba1 2 QNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLGQAAPSFGGTTGTLQDAFDLEALKALDIIVTCQGGDY-TNE 80 (146)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSSTTSBCCGGGTCCCBCEETTCHHHHHTCSEEEECSCHHH-HHH
T ss_pred cEEEEECCccHHHHHHHHHHHhCCCCCeeEEEEeeccccccccccccCCceeeecccchhhhhcCcEEEEecCchH-HHH
Confidence 58999997 9999999986642 3 24666654332211 0 111111111 1 2245789999999999432 222
Q ss_pred cccHhHhccCCCceEEEEccC---Cc----c----ccHHHHHHhHhcC
Q 007512 268 VLNDETFGKMKKGVRIINVAR---GG----V----IDEEALVRALDSG 304 (600)
Q Consensus 268 li~~~~l~~mk~gailvNvar---g~----i----vde~aL~~aL~~g 304 (600)
+. ..+..-+.++++||.+. -. + |+.+.|..++++|
T Consensus 81 ~~--~~~~~~g~~~~VID~Ss~fR~~~dvplviPEVN~~~i~~~~~~g 126 (146)
T d1t4ba1 81 IY--PKLRESGWQGYWIDAASSLRMKDDAIIILDPVNQDVITDGLNNG 126 (146)
T ss_dssp HH--HHHHHTTCCCEEEECSSTTTTCTTEEEECHHHHHHHHHHHHHTT
T ss_pred hh--HHHHhcCCCeecccCCcccccCCCCcEECCCcCHHHHHHHHHcC
Confidence 21 12222233457888873 11 1 3555676777763
|
| >d2g5ca1 a.100.1.12 (A:201-310) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: TyrA dimerization domain-like domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=91.40 E-value=0.0033 Score=52.83 Aligned_cols=76 Identities=16% Similarity=0.022 Sum_probs=54.6
Q ss_pred CCChhhhhccc--chHHHHHHHHHHH---------HHHhcCCCCceEEEEEEeecCCCCccccccccHHHHHhhchhhhc
Q 007512 373 MVPAEVLTELK--PFVELAEKLGRLA---------VQLVAGGSGVKTVKVSYASSRAPDDLDTRLLRAMITKGLIEPISD 441 (600)
Q Consensus 373 ~i~~~~~~~~~--p~~~la~~lG~l~---------~qL~~g~~~~k~v~i~~~Gs~a~~~~~~~~~~~a~l~GlL~~~~~ 441 (600)
..|++.+..++ ||+.....++.+. ..+++| +|++.|+++.|++. ||.++...|+..+...|+.+..
T Consensus 3 eeHD~~~A~vSHlPHlia~al~~~~~~~~~~~~~~~~~agg--gfrD~TRiA~s~p~-mW~dI~~~N~~~i~~~l~~~~~ 79 (110)
T d2g5ca1 3 ELHDYVFGVVSHLPHAVAFALVDTLIHMSTPEVDLFKYPGG--GFKDFTRIAKSDPI-MWRDIFLENKENVMKAIEGFEK 79 (110)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHHHHHCBTTBCGGGCCTT--TGGGC---CCSCHH-HHHHHHHHTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHhhcchHHHHHHcch--hHHHHHHHHcCCHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777777 8876655555443 245677 89999999999998 9999999999988888888877
Q ss_pred cchhhccHHH
Q 007512 442 VFVNLVNADY 451 (600)
Q Consensus 442 ~~vn~vnA~~ 451 (600)
..-.+.++..
T Consensus 80 ~L~~~~~~l~ 89 (110)
T d2g5ca1 80 SLNHLKELIV 89 (110)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6556665543
|
| >d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Helicobacter pylori [TaxId: 210]
Probab=91.20 E-value=0.15 Score=48.21 Aligned_cols=37 Identities=16% Similarity=0.156 Sum_probs=32.7
Q ss_pred eccCCEEEEEec-C--hhHHHHHHHhhcCCCEEEEECCCC
Q 007512 194 SLVGKTLAVLGF-G--KVGSEVARRAKGLGMHVIAHDPYA 230 (600)
Q Consensus 194 ~l~gktiGIIGl-G--~IG~~vA~~l~~~g~~V~~~d~~~ 230 (600)
-|+||++.|.|- | -||.++|++|...|++|+..+++.
T Consensus 2 ~L~gK~alITGaag~~GIG~AiA~~la~~Ga~V~i~~r~~ 41 (274)
T d2pd4a1 2 FLKGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNE 41 (274)
T ss_dssp TTTTCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESST
T ss_pred cCCCCEEEEECCCCCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 378999999996 4 499999999999999999988764
|
| >d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC species: Thermotoga maritima [TaxId: 2336]
Probab=90.99 E-value=0.28 Score=43.93 Aligned_cols=94 Identities=17% Similarity=0.271 Sum_probs=58.8
Q ss_pred CEEEEEe-cChhHHHHHHHhhcC-CCEEEEECC--CCC--hhHHHH--cC---CcccCHHHHhccCCEEEEecCCCcccc
Q 007512 198 KTLAVLG-FGKVGSEVARRAKGL-GMHVIAHDP--YAP--ADRARA--IG---VDLVSFDEAIATADFISLHMPLTPATS 266 (600)
Q Consensus 198 ktiGIIG-lG~IG~~vA~~l~~~-g~~V~~~d~--~~~--~~~a~~--~g---~~~~~l~ell~~aDvV~l~~Pl~~~t~ 266 (600)
.+|||+| .|..|+++.+.|..+ .+++...-. +.- ...... .+ +...+.+++..++|++++++|... ..
T Consensus 2 ikVaIvGATGyvG~eLirlL~~HP~~ei~~l~s~~~aG~~i~~~~p~~~~~~~~~~~~~~~~~~~~dvvf~a~p~~~-s~ 80 (176)
T d1vkna1 2 IRAGIIGATGYTGLELVRLLKNHPEAKITYLSSRTYAGKKLEEIFPSTLENSILSEFDPEKVSKNCDVLFTALPAGA-SY 80 (176)
T ss_dssp EEEEEESTTSHHHHHHHHHHHHCTTEEEEEEECSTTTTSBHHHHCGGGCCCCBCBCCCHHHHHHHCSEEEECCSTTH-HH
T ss_pred eEEEEECCCcHHHHHHHHHHHhCCCceEEEeeccccCCCcccccCchhhccccccccCHhHhccccceEEEccccHH-HH
Confidence 3799997 599999999999876 567766522 221 111100 11 123467788889999999999553 22
Q ss_pred ccccHhHhccCCCceEEEEccCCccccHHHHH
Q 007512 267 KVLNDETFGKMKKGVRIINVARGGVIDEEALV 298 (600)
Q Consensus 267 ~li~~~~l~~mk~gailvNvarg~ivde~aL~ 298 (600)
+..... .++.+||.+..==.+....+
T Consensus 81 -----~~~~~~-~~~~VIDlSadfRl~~~~~y 106 (176)
T d1vkna1 81 -----DLVREL-KGVKIIDLGADFRFDDPGVY 106 (176)
T ss_dssp -----HHHTTC-CSCEEEESSSTTTCSSHHHH
T ss_pred -----HHHHhh-ccceEEecCccccccchhhH
Confidence 233333 58899999854434433333
|
| >d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=90.77 E-value=0.12 Score=47.60 Aligned_cols=34 Identities=29% Similarity=0.391 Sum_probs=31.7
Q ss_pred CCEEEEEecChhHHHHHHHhhcCCCEEEEECCCC
Q 007512 197 GKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYA 230 (600)
Q Consensus 197 gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~ 230 (600)
||+|.|||-|.-|-..|..|+..|++|..++...
T Consensus 1 ~KkV~IIGaG~aGL~aA~~La~~G~~V~vlE~~~ 34 (373)
T d1seza1 1 AKRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEG 34 (373)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTSCEEEEECSSS
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 7999999999999999999999999999998653
|
| >d1tuga1 c.78.1.1 (A:1-150,A:151-310) Aspartate carbamoyltransferase catalytic subunit {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Aspartate carbamoyltransferase catalytic subunit species: Escherichia coli [TaxId: 562]
Probab=90.76 E-value=0.83 Score=44.32 Aligned_cols=93 Identities=17% Similarity=0.234 Sum_probs=60.9
Q ss_pred eccCCEEEEEec---ChhHHHHHHHhhcC-CCEEEEECCCC--Ch----hHHHHcCCc---ccCHHHHhccCCEEEEecC
Q 007512 194 SLVGKTLAVLGF---GKVGSEVARRAKGL-GMHVIAHDPYA--PA----DRARAIGVD---LVSFDEAIATADFISLHMP 260 (600)
Q Consensus 194 ~l~gktiGIIGl---G~IG~~vA~~l~~~-g~~V~~~d~~~--~~----~~a~~~g~~---~~~l~ell~~aDvV~l~~P 260 (600)
.+.|++|.++|- +++-.+.+..+..+ |+++..+.|.. .. +.+.+.|.. ..++++.++++|+|..-.-
T Consensus 151 ~l~~~~i~~vGD~~~~~v~~S~~~~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~d~~~a~~~aDvvy~~~~ 230 (310)
T d1tuga1 151 RLDNLHVAMVGDLKYGRTVHSLTQALAKFDGNRFYFIAPDALAMPQYILDMLDEKGIAWSLHSSIEEVMAEVDILYMTRV 230 (310)
T ss_dssp CSSSCEEEEESCTTTCHHHHHHHHHHTTSSSCEEEEECCGGGCCCHHHHHHHHTTTCCEEEESCGGGTTTTCSEEEECCC
T ss_pred CcccceEEEEeccccCcchHHHHHHHHhccCceEEEeCCcccccchhcccccccccceeeeeechhhhccCCceeeeccc
Confidence 478999999997 78899999999888 57888887743 22 223444443 2378999999999875321
Q ss_pred CCcc-----------ccccccHhHhccCCCceEEEEcc
Q 007512 261 LTPA-----------TSKVLNDETFGKMKKGVRIINVA 287 (600)
Q Consensus 261 l~~~-----------t~~li~~~~l~~mk~gailvNva 287 (600)
..+ -...++.+.++.++++++|.-|.
T Consensus 231 -~~e~~~~~~~~~~~~~~~v~~~~l~~a~~~~i~MHcL 267 (310)
T d1tuga1 231 -QKERLDPSEYANVKAQFVLRASDLHNAKANMKVLHPL 267 (310)
T ss_dssp -CGGGSCHHHHHTTTTSSCBCGGGGTTSCSSCEEECCS
T ss_pred -chhhhcccchhhhhhhhhhhHHHHhcCCCCcEEeeCC
Confidence 111 01224555556666666665553
|
| >d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Type II 3-hydroxyacyl-CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.76 E-value=0.14 Score=47.72 Aligned_cols=38 Identities=24% Similarity=0.249 Sum_probs=33.6
Q ss_pred eeccCCEEEEEecCh-hHHHHHHHhhcCCCEEEEECCCC
Q 007512 193 VSLVGKTLAVLGFGK-VGSEVARRAKGLGMHVIAHDPYA 230 (600)
Q Consensus 193 ~~l~gktiGIIGlG~-IG~~vA~~l~~~g~~V~~~d~~~ 230 (600)
+.|+||++-|-|-+. ||+++|++|...|++|+..|++.
T Consensus 1 ~slkGKvalITGas~GIG~aia~~la~~G~~V~~~~r~~ 39 (248)
T d2o23a1 1 RSVKGLVAVITGGASGLGLATAERLVGQGASAVLLDLPN 39 (248)
T ss_dssp CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTT
T ss_pred CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCh
Confidence 368999999997765 99999999999999999998765
|
| >d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Probab=90.62 E-value=0.14 Score=42.55 Aligned_cols=34 Identities=21% Similarity=0.320 Sum_probs=31.0
Q ss_pred CCEEEEEecChhHHHHHHHhhcCCCEEEEECCCC
Q 007512 197 GKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYA 230 (600)
Q Consensus 197 gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~ 230 (600)
-+++.|||-|.||-++|..++.+|.+|..+++..
T Consensus 22 p~~v~IiGgG~iG~E~A~~l~~~g~~Vtlv~~~~ 55 (117)
T d1onfa2 22 SKKIGIVGSGYIAVELINVIKRLGIDSYIFARGN 55 (117)
T ss_dssp CSEEEEECCSHHHHHHHHHHHTTTCEEEEECSSS
T ss_pred CCEEEEECCchHHHHHHHHHHhccccceeeehhc
Confidence 4799999999999999999999999999988643
|
| >d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein PH1109 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=90.61 E-value=0.27 Score=42.33 Aligned_cols=93 Identities=16% Similarity=0.146 Sum_probs=65.1
Q ss_pred cCCEEEEEec----ChhHHHHHHHhhcCCCEEEEECCCCChhHHHHcCCc-ccCHHHHhccCCEEEEecCCCcccccccc
Q 007512 196 VGKTLAVLGF----GKVGSEVARRAKGLGMHVIAHDPYAPADRARAIGVD-LVSFDEAIATADFISLHMPLTPATSKVLN 270 (600)
Q Consensus 196 ~gktiGIIGl----G~IG~~vA~~l~~~g~~V~~~d~~~~~~~a~~~g~~-~~~l~ell~~aDvV~l~~Pl~~~t~~li~ 270 (600)
.-|+|+|||. |+.|..+++.|+.+|++|+..+|... .=.|.. +.++.++-..-|++++++| .+.+..++.
T Consensus 18 ~~ksIAVVGaS~~~~~~g~~v~~~L~~~g~~v~pVnP~~~----~i~G~~~~~sl~dlp~~iD~v~i~vp-~~~~~~~~~ 92 (139)
T d2d59a1 18 RYKKIALVGASPKPERDANIVMKYLLEHGYDVYPVNPKYE----EVLGRKCYPSVLDIPDKIEVVDLFVK-PKLTMEYVE 92 (139)
T ss_dssp HCCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCS----EETTEECBSSGGGCSSCCSEEEECSC-HHHHHHHHH
T ss_pred cCCeEEEEeecCCCCCchHHHHHHHHHCCCEEEEECCccc----ccCCCcccccccccCccceEEEEEeC-HHHHHHHHH
Confidence 4689999996 57999999999999999999998752 113444 3478888888999999999 333444443
Q ss_pred HhHhccCCCceEEEEccCCccccHHHHH
Q 007512 271 DETFGKMKKGVRIINVARGGVIDEEALV 298 (600)
Q Consensus 271 ~~~l~~mk~gailvNvarg~ivde~aL~ 298 (600)
+- . .+...++++..| ..+++...
T Consensus 93 e~-~-~~g~k~v~~~~G---~~~ee~~~ 115 (139)
T d2d59a1 93 QA-I-KKGAKVVWFQYN---TYNREASK 115 (139)
T ss_dssp HH-H-HHTCSEEEECTT---CCCHHHHH
T ss_pred HH-H-HhCCCEEEEecc---ccCHHHHH
Confidence 32 2 245557777654 23555433
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Probab=90.57 E-value=0.12 Score=48.95 Aligned_cols=37 Identities=30% Similarity=0.384 Sum_probs=33.4
Q ss_pred eccCCEEEEEe-cChhHHHHHHHhhcCCCEEEEECCCC
Q 007512 194 SLVGKTLAVLG-FGKVGSEVARRAKGLGMHVIAHDPYA 230 (600)
Q Consensus 194 ~l~gktiGIIG-lG~IG~~vA~~l~~~g~~V~~~d~~~ 230 (600)
.|+||++-|.| -+-||+++|++|...|++|+..+++.
T Consensus 3 ~L~gK~alITGas~GIG~aia~~la~~G~~V~i~~r~~ 40 (258)
T d1ae1a_ 3 SLKGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNE 40 (258)
T ss_dssp CCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence 68999999998 56699999999999999999998764
|
| >d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Probab=90.54 E-value=0.54 Score=41.03 Aligned_cols=45 Identities=31% Similarity=0.476 Sum_probs=38.2
Q ss_pred cCCEEEEEecChhHHHHHHHhhcCC-CEEEEECCCC-ChhHHHHcCC
Q 007512 196 VGKTLAVLGFGKVGSEVARRAKGLG-MHVIAHDPYA-PADRARAIGV 240 (600)
Q Consensus 196 ~gktiGIIGlG~IG~~vA~~l~~~g-~~V~~~d~~~-~~~~a~~~g~ 240 (600)
.|.+|.|+|.|.+|...+..++..| .+|++.|+.. ..+.++++|.
T Consensus 28 ~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~~~GA 74 (175)
T d1cdoa2 28 PGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGA 74 (175)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTC
T ss_pred CCCEEEEEecCCccchHHHHHHHHhhchheeecchHHHHHHHHHcCC
Confidence 5889999999999999999999775 5899999887 4567777776
|
| >d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.46 E-value=0.14 Score=42.89 Aligned_cols=33 Identities=27% Similarity=0.361 Sum_probs=30.2
Q ss_pred CEEEEEecChhHHHHHHHhhcCCCEEEEECCCC
Q 007512 198 KTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYA 230 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~ 230 (600)
|++.|||-|.||-++|..+..+|++|..+++..
T Consensus 24 ~~~vIiG~G~ig~E~A~~l~~lG~~Vtii~~~~ 56 (122)
T d1v59a2 24 KRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQP 56 (122)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred CeEEEECCCchHHHHHHHHHhhCcceeEEEecc
Confidence 799999999999999999999999999887543
|
| >d2csua1 c.2.1.8 (A:1-129) Acetate-CoA ligase alpha chain, AcdA, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Acetate-CoA ligase alpha chain, AcdA, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=90.29 E-value=0.1 Score=44.44 Aligned_cols=87 Identities=24% Similarity=0.230 Sum_probs=60.6
Q ss_pred ccCCEEEEEec----ChhHHHHHHHhhcCC-CEEEEECCCCChhHHHHcCCcc-cCHHHHhccCCEEEEecCCCcccccc
Q 007512 195 LVGKTLAVLGF----GKVGSEVARRAKGLG-MHVIAHDPYAPADRARAIGVDL-VSFDEAIATADFISLHMPLTPATSKV 268 (600)
Q Consensus 195 l~gktiGIIGl----G~IG~~vA~~l~~~g-~~V~~~d~~~~~~~a~~~g~~~-~~l~ell~~aDvV~l~~Pl~~~t~~l 268 (600)
++=|+|+|||. |..|..+.+.|+..| .+|+..+|.... =.|... -+++++=..-|++++++| .+.+..+
T Consensus 6 f~PksIAVVGaS~~~~~~g~~v~~~L~~~~~g~v~pVnP~~~~----i~G~~~y~sl~dlp~~vDlvvi~vp-~~~~~~~ 80 (129)
T d2csua1 6 FNPKGIAVIGASNDPKKLGYEVFKNLKEYKKGKVYPVNIKEEE----VQGVKAYKSVKDIPDEIDLAIIVVP-KRFVKDT 80 (129)
T ss_dssp TSCSEEEEETCCSCTTSHHHHHHHHHTTCCSSEEEEECSSCSE----ETTEECBSSTTSCSSCCSEEEECSC-HHHHHHH
T ss_pred CCCCeEEEEccCCCCCCcHHHHHHHHHHcCCCcEEEeccCccc----cCCeEeecchhhcCCCCceEEEecC-hHHhHHH
Confidence 45689999997 899999999998765 799999987521 135543 478888888999999999 4455566
Q ss_pred ccHhHhccCCCceEEEEcc
Q 007512 269 LNDETFGKMKKGVRIINVA 287 (600)
Q Consensus 269 i~~~~l~~mk~gailvNva 287 (600)
+.+-.-... ++++++--+
T Consensus 81 ~~~~~~~g~-~~~vi~s~G 98 (129)
T d2csua1 81 LIQCGEKGV-KGVVIITAG 98 (129)
T ss_dssp HHHHHHHTC-CEEEECCCS
T ss_pred HHHHHHcCC-CEEEEeccc
Confidence 533222222 344555433
|
| >d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]
Probab=90.16 E-value=0.12 Score=44.49 Aligned_cols=35 Identities=26% Similarity=0.393 Sum_probs=31.0
Q ss_pred cCCEEEEEecChhHHHHHHHhhcCC--CEEEEECCCC
Q 007512 196 VGKTLAVLGFGKVGSEVARRAKGLG--MHVIAHDPYA 230 (600)
Q Consensus 196 ~gktiGIIGlG~IG~~vA~~l~~~g--~~V~~~d~~~ 230 (600)
.||+|.|||-|.+|-++|..|+.++ .+|..+++..
T Consensus 1 ~gkrivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~ 37 (186)
T d1fcda1 1 AGRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNT 37 (186)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCS
T ss_pred CCCcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCC
Confidence 4899999999999999999998765 6899998765
|
| >d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=90.08 E-value=0.16 Score=42.03 Aligned_cols=33 Identities=27% Similarity=0.501 Sum_probs=30.5
Q ss_pred CEEEEEecChhHHHHHHHhhcCCCEEEEECCCC
Q 007512 198 KTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYA 230 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~ 230 (600)
+++.|||-|.+|-++|..++.+|.+|..+++..
T Consensus 22 ~~vvIiGgG~ig~E~A~~l~~~G~~Vtlve~~~ 54 (116)
T d1gesa2 22 ERVAVVGAGYIGVELGGVINGLGAKTHLFEMFD 54 (116)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred CEEEEECCChhhHHHHHHhhccccEEEEEeecc
Confidence 689999999999999999999999999987654
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.89 E-value=0.14 Score=48.22 Aligned_cols=37 Identities=22% Similarity=0.311 Sum_probs=34.1
Q ss_pred eccCCEEEEEecCh-hHHHHHHHhhcCCCEEEEECCCC
Q 007512 194 SLVGKTLAVLGFGK-VGSEVARRAKGLGMHVIAHDPYA 230 (600)
Q Consensus 194 ~l~gktiGIIGlG~-IG~~vA~~l~~~g~~V~~~d~~~ 230 (600)
+|.||++.|-|.+. ||+++|+.+...|++|+..|++.
T Consensus 4 ~l~Gkv~lITGas~GIG~~ia~~la~~G~~V~l~~r~~ 41 (244)
T d1yb1a_ 4 SVTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINK 41 (244)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence 68999999998876 99999999999999999999864
|
| >d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Probab=89.85 E-value=0.18 Score=41.61 Aligned_cols=36 Identities=19% Similarity=0.111 Sum_probs=32.2
Q ss_pred ccCCEEEEEecChhHHHHHHHhhcCCCEEEEECCCC
Q 007512 195 LVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYA 230 (600)
Q Consensus 195 l~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~ 230 (600)
..++++.|||-|.||-++|..|+.+|.+|..+.+..
T Consensus 20 ~~~~~vvVvGgG~ig~E~A~~l~~~g~~vt~i~~~~ 55 (121)
T d1mo9a2 20 EPGSTVVVVGGSKTAVEYGCFFNATGRRTVMLVRTE 55 (121)
T ss_dssp CCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhcchhheEeeccc
Confidence 348999999999999999999999999999987643
|
| >d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=89.63 E-value=0.055 Score=47.52 Aligned_cols=87 Identities=17% Similarity=0.170 Sum_probs=53.0
Q ss_pred CCEEEEEec-ChhHHHHHHHhhcCC---CEEEEECCCCChhHHHHcCC----cccCHHHHhccCCEEEEecCCCcccccc
Q 007512 197 GKTLAVLGF-GKVGSEVARRAKGLG---MHVIAHDPYAPADRARAIGV----DLVSFDEAIATADFISLHMPLTPATSKV 268 (600)
Q Consensus 197 gktiGIIGl-G~IG~~vA~~l~~~g---~~V~~~d~~~~~~~a~~~g~----~~~~l~ell~~aDvV~l~~Pl~~~t~~l 268 (600)
|-+|||||. |.+|+++.+.|..+. .++..+....+......... .....++.+.++|++++++|... +..+
T Consensus 1 g~kVaIvGATGyvG~eLirlL~~H~fp~~~l~~~~s~~s~G~~~~~~~~~~~~~~~~~~~~~~~d~~f~~~~~~~-s~~~ 79 (154)
T d2gz1a1 1 GYTVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASARSAGKSLKFKDQDITIEETTETAFEGVDIALFSAGSST-SAKY 79 (154)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHTCCSCEEEEEEEECGGGTTCEEEETTEEEEEEECCTTTTTTCSEEEECSCHHH-HHHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHcCCCCceEEEEecccccccccccccCCcccccccchhhhhhhhhhhhccCccc-hhhH
Confidence 558999997 999999999998664 34444432211110000011 11234567789999999999332 2222
Q ss_pred ccHhHhccCCCceEEEEccC
Q 007512 269 LNDETFGKMKKGVRIINVAR 288 (600)
Q Consensus 269 i~~~~l~~mk~gailvNvar 288 (600)
.....++|+.+||.+.
T Consensus 80 ----~~~~~~~~~~VIDlSs 95 (154)
T d2gz1a1 80 ----APYAVKAGVVVVDNTS 95 (154)
T ss_dssp ----HHHHHHTTCEEEECSS
T ss_pred ----HhhhccccceehhcCh
Confidence 2223568999999873
|
| >d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=89.60 E-value=0.15 Score=42.04 Aligned_cols=33 Identities=27% Similarity=0.382 Sum_probs=30.1
Q ss_pred CCEEEEEecChhHHHHHHHhhcCCCEEEEECCC
Q 007512 197 GKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPY 229 (600)
Q Consensus 197 gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~ 229 (600)
-+++.|||-|.||-++|..+..+|.+|..+.+.
T Consensus 22 p~~v~IiGgG~ig~E~A~~l~~~G~~Vtlve~~ 54 (117)
T d1ebda2 22 PKSLVVIGGGYIGIELGTAYANFGTKVTILEGA 54 (117)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred CCeEEEECCCccceeeeeeecccccEEEEEEec
Confidence 479999999999999999999999999988644
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=89.52 E-value=0.13 Score=45.35 Aligned_cols=45 Identities=27% Similarity=0.259 Sum_probs=34.6
Q ss_pred cCCEEEEEe-cChhHHHHHHHhhcCCCEEEEECCCC-ChhHHHHcCC
Q 007512 196 VGKTLAVLG-FGKVGSEVARRAKGLGMHVIAHDPYA-PADRARAIGV 240 (600)
Q Consensus 196 ~gktiGIIG-lG~IG~~vA~~l~~~g~~V~~~d~~~-~~~~a~~~g~ 240 (600)
.|++|.|+| .|.+|....+.++..|++|++.+.+. ..+.++++|.
T Consensus 28 ~g~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s~~k~~~~~~lGa 74 (179)
T d1qora2 28 PDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALKAGA 74 (179)
T ss_dssp TTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHTC
T ss_pred CCCEEEEEccccccchHHHHHHHHhCCeEeecccchHHHHHHHhcCC
Confidence 478999994 55599999999999999999998775 3344454443
|
| >d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 2 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=89.49 E-value=0.095 Score=46.39 Aligned_cols=35 Identities=20% Similarity=0.266 Sum_probs=31.5
Q ss_pred cCCEEEEEecChhHHHHHHHhhcCCCE-EEEECCCC
Q 007512 196 VGKTLAVLGFGKVGSEVARRAKGLGMH-VIAHDPYA 230 (600)
Q Consensus 196 ~gktiGIIGlG~IG~~vA~~l~~~g~~-V~~~d~~~ 230 (600)
.+|+|.|||-|..|-+.|..|+..|++ |..|+...
T Consensus 3 ~~~kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~~ 38 (196)
T d1gtea4 3 YSAKIALLGAGPASISCASFLARLGYSDITIFEKQE 38 (196)
T ss_dssp GGCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSS
T ss_pred CCCEEEEECChHHHHHHHHHHHHCCCCeEEEEEecC
Confidence 589999999999999999999999984 98888654
|
| >d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Malate oxidoreductase (malic enzyme) species: Thermotoga maritima [TaxId: 2336]
Probab=89.47 E-value=0.72 Score=42.68 Aligned_cols=124 Identities=21% Similarity=0.192 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHHHhchHHHHHHHHcCccccccccceeccCCEEEEEecChhHHHHHHHhhcCCC-EEEEECCCC--Ch--
Q 007512 158 AAEHGIALLAAMARNVAQADASVKAGKWQRNKYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGM-HVIAHDPYA--PA-- 232 (600)
Q Consensus 158 vAE~~l~lll~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktiGIIGlG~IG~~vA~~l~~~g~-~V~~~d~~~--~~-- 232 (600)
+|--+++-+|+.+| ..|..|...++.|.|.|.-|-.+|+.+...+. +++.+|+.- ..
T Consensus 5 TaaV~LAgll~a~~------------------~~g~~l~d~riv~~GAGsAg~gia~~l~~~~~~~i~~~D~~GLi~~~r 66 (222)
T d1vl6a1 5 TAVVVSAAFLNALK------------------LTEKKIEEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRKGILNEND 66 (222)
T ss_dssp HHHHHHHHHHHHHH------------------HHTCCTTTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEECCTTS
T ss_pred HHHHHHHHHHHHHH------------------HhCCChhhcEEEEEChHHHHHHHHHHHHHhcccceEeecceeEEEcCc
Confidence 44556677777766 24678999999999999999999999986664 788888651 10
Q ss_pred -----h-----HHHHcCC--cccCHHHHhccCCEEEEecCCCccccccccHhHhccCCCceEEEEccCCccccHHHHHHh
Q 007512 233 -----D-----RARAIGV--DLVSFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVIDEEALVRA 300 (600)
Q Consensus 233 -----~-----~a~~~g~--~~~~l~ell~~aDvV~l~~Pl~~~t~~li~~~~l~~mk~gailvNvarg~ivde~aL~~a 300 (600)
. .+..... ...++.+++..+|++...- +.+++.++.+.+|.+..+|.=.+.-..--|.+. +
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~g~~~~~g~~-----~~~~~~~e~m~~~~~rPIIFpLSNPt~~~e~~~--a 139 (222)
T d1vl6a1 67 PETCLNEYHLEIARITNPERLSGDLETALEGADFFIGVS-----RGNILKPEWIKKMSRKPVIFALANPVPEIDPEL--A 139 (222)
T ss_dssp GGGCSSHHHHHHHHTSCTTCCCSCHHHHHTTCSEEEECS-----CSSCSCHHHHTTSCSSCEEEECCSSSCSSCHHH--H
T ss_pred ccccccHHHHHHHhhhcchhhhcchHhhccCcceecccc-----ccccccHHHHhhcCCCCEEEecCCCccchhhhh--h
Confidence 0 1111111 1337889999999876643 477888889999999999999887544333332 2
Q ss_pred HhcCCc
Q 007512 301 LDSGRV 306 (600)
Q Consensus 301 L~~g~i 306 (600)
-..|+.
T Consensus 140 ~~~G~a 145 (222)
T d1vl6a1 140 REAGAF 145 (222)
T ss_dssp HHTTCS
T ss_pred eeccce
Confidence 344543
|
| >d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.14 E-value=0.2 Score=41.93 Aligned_cols=33 Identities=18% Similarity=0.153 Sum_probs=30.5
Q ss_pred CEEEEEecChhHHHHHHHhhcCCCEEEEECCCC
Q 007512 198 KTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYA 230 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~ 230 (600)
|++.|||-|.||-++|..++.+|.+|..+.+..
T Consensus 23 k~vvIvGgG~iG~E~A~~l~~~G~~Vtlv~~~~ 55 (125)
T d3grsa2 23 GRSVIVGAGYIAVEMAGILSALGSKTSLMIRHD 55 (125)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred CEEEEEcCCccHHHHHHHHhcCCcEEEEEeecc
Confidence 799999999999999999999999999987653
|
| >d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Usg-1 protein homolog PA3116 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=88.85 E-value=0.098 Score=45.41 Aligned_cols=86 Identities=10% Similarity=0.093 Sum_probs=50.5
Q ss_pred CEEEEEec-ChhHHHHHHHhh--cC-CCEEEEECCCCChhHHHHcCC---cccC-HHHHhccCCEEEEecCCCccccccc
Q 007512 198 KTLAVLGF-GKVGSEVARRAK--GL-GMHVIAHDPYAPADRARAIGV---DLVS-FDEAIATADFISLHMPLTPATSKVL 269 (600)
Q Consensus 198 ktiGIIGl-G~IG~~vA~~l~--~~-g~~V~~~d~~~~~~~a~~~g~---~~~~-l~ell~~aDvV~l~~Pl~~~t~~li 269 (600)
.+|||||. |.+|+++.+.|. .| ..++.......+......... ...+ -.+.+.++|++++++|... ...+.
T Consensus 3 mnVaIvGATGyvG~eli~lL~~~~hP~~~l~~~~s~~~~Gk~i~~~~~~~~~~~~~~~~~~~~d~vf~a~p~~~-s~~~~ 81 (144)
T d2hjsa1 3 LNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAGQRMGFAESSLRVGDVDSFDFSSVGLAFFAAAAEV-SRAHA 81 (144)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTTTCEEEETTEEEECEEGGGCCGGGCSEEEECSCHHH-HHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCCceEEEEEeecccCCcceeeccccchhccchhhhhccceEEEecCCcch-hhhhc
Confidence 57999986 999999999995 34 356655422221110000111 1111 2355788999999999332 22222
Q ss_pred cHhHhccCCCceEEEEccC
Q 007512 270 NDETFGKMKKGVRIINVAR 288 (600)
Q Consensus 270 ~~~~l~~mk~gailvNvar 288 (600)
. ...+.|+++||.+.
T Consensus 82 ~----~~~~~g~~VID~Ss 96 (144)
T d2hjsa1 82 E----RARAAGCSVIDLSG 96 (144)
T ss_dssp H----HHHHTTCEEEETTC
T ss_pred c----ccccCCceEEeech
Confidence 1 12467899999874
|
| >d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Escherichia coli [TaxId: 562]
Probab=88.73 E-value=0.061 Score=47.85 Aligned_cols=62 Identities=21% Similarity=0.268 Sum_probs=39.2
Q ss_pred CEEEEEec-ChhHHHHHHHhhcC-CCEEEE-ECCCCChhHHH---------HcCCcc-cCHHHHhccCCEEEEec
Q 007512 198 KTLAVLGF-GKVGSEVARRAKGL-GMHVIA-HDPYAPADRAR---------AIGVDL-VSFDEAIATADFISLHM 259 (600)
Q Consensus 198 ktiGIIGl-G~IG~~vA~~l~~~-g~~V~~-~d~~~~~~~a~---------~~g~~~-~~l~ell~~aDvV~l~~ 259 (600)
.+|+|+|+ |+||+.+++.+... ++++.+ +|+........ ..++.. .++++++..+|+|+=-.
T Consensus 5 ikI~i~Ga~GrMG~~i~~~i~~~~~~~lv~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~DViIDFs 79 (162)
T d1diha1 5 IRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGAGKTGVTVQSSLDAVKDDFDVFIDFT 79 (162)
T ss_dssp EEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTTCSCCTTCSSSSSCCSCCEESCSTTTTTSCSEEEECS
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecccchhccchhhhhhccccCCceeeccHHHHhcccceEEEec
Confidence 47999995 99999999998754 788765 56543211100 112222 25666777778776544
|
| >d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=88.69 E-value=0.2 Score=41.80 Aligned_cols=34 Identities=29% Similarity=0.435 Sum_probs=31.2
Q ss_pred CCEEEEEecChhHHHHHHHhhcCCCEEEEECCCC
Q 007512 197 GKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYA 230 (600)
Q Consensus 197 gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~ 230 (600)
++++.|||-|.+|-++|..|+..|.+|..+++..
T Consensus 30 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~ 63 (121)
T d1d7ya2 30 QSRLLIVGGGVIGLELAATARTAGVHVSLVETQP 63 (121)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred CCeEEEECcchhHHHHHHHhhcccceEEEEeecc
Confidence 6899999999999999999999999999987654
|
| >d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Alpha-glucosidase AglA species: Thermotoga maritima [TaxId: 2336]
Probab=88.58 E-value=0.17 Score=45.01 Aligned_cols=64 Identities=23% Similarity=0.311 Sum_probs=42.5
Q ss_pred CCEEEEEecChhHHHHHH---Hhh--cC-CCEEEEECCCCChhHH---------HHcCC--c---ccCHHHHhccCCEEE
Q 007512 197 GKTLAVLGFGKVGSEVAR---RAK--GL-GMHVIAHDPYAPADRA---------RAIGV--D---LVSFDEAIATADFIS 256 (600)
Q Consensus 197 gktiGIIGlG~IG~~vA~---~l~--~~-g~~V~~~d~~~~~~~a---------~~~g~--~---~~~l~ell~~aDvV~ 256 (600)
+.+|+|||.|.+|...+- .++ .+ +-++..+|.+.....+ ...+. + ..++++.++.||+|+
T Consensus 2 ~mKI~iIGaGsvg~t~~~~~~l~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~i~~~td~~eaL~dad~Vv 81 (171)
T d1obba1 2 SVKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVGADLKFEKTMNLDDVIIDADFVI 81 (171)
T ss_dssp CCEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCSEEE
T ss_pred CcEEEEECCCHHHhHHHHHHHHHhccccCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCCeEEEEeCChhhcccCCCeEe
Confidence 469999999999976432 332 33 4599999987532111 11222 1 237889999999999
Q ss_pred EecC
Q 007512 257 LHMP 260 (600)
Q Consensus 257 l~~P 260 (600)
+++-
T Consensus 82 ~~~~ 85 (171)
T d1obba1 82 NTAM 85 (171)
T ss_dssp ECCC
T ss_pred eecc
Confidence 8754
|
| >d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Maltose-6'-phosphate glucosidase GlvA species: Bacillus subtilis [TaxId: 1423]
Probab=88.53 E-value=0.32 Score=43.11 Aligned_cols=65 Identities=18% Similarity=0.170 Sum_probs=41.7
Q ss_pred CCEEEEEecChhHHH--HHHHhh---cC-CCEEEEECCCCChhH--H-------HHcCCc-----ccCHHHHhccCCEEE
Q 007512 197 GKTLAVLGFGKVGSE--VARRAK---GL-GMHVIAHDPYAPADR--A-------RAIGVD-----LVSFDEAIATADFIS 256 (600)
Q Consensus 197 gktiGIIGlG~IG~~--vA~~l~---~~-g~~V~~~d~~~~~~~--a-------~~~g~~-----~~~l~ell~~aDvV~ 256 (600)
..+|.|||.|.+|.. +...++ .+ +-++..+|.+..... + ...+.. ..+..|.++.||+|+
T Consensus 3 ~~KI~iIGaGsv~~~~~~~~ll~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~eal~~AD~Vv 82 (167)
T d1u8xx1 3 SFSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAPDIEFAATTDPEEAFTDVDFVM 82 (167)
T ss_dssp CEEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHHHHCTTSEEEEESCHHHHHSSCSEEE
T ss_pred CceEEEECCChhhhHHHHHHHHhhhhhcCCCEEEEEcCChhHHHHHHHHHHHHHHHhCCCcceEecCChhhccCCCCEEE
Confidence 458999999988754 223333 22 248999998753211 1 111221 237889999999999
Q ss_pred EecCC
Q 007512 257 LHMPL 261 (600)
Q Consensus 257 l~~Pl 261 (600)
++.-.
T Consensus 83 itag~ 87 (167)
T d1u8xx1 83 AHIRV 87 (167)
T ss_dssp ECCCT
T ss_pred ECCCc
Confidence 98753
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=88.47 E-value=0.21 Score=44.41 Aligned_cols=87 Identities=24% Similarity=0.217 Sum_probs=62.1
Q ss_pred cCCEEEEEec-ChhHHHHHHHhhcCCCEEEEECCCC-ChhHHHHcCCccc------C-HHHHh-----ccCCEEEEecCC
Q 007512 196 VGKTLAVLGF-GKVGSEVARRAKGLGMHVIAHDPYA-PADRARAIGVDLV------S-FDEAI-----ATADFISLHMPL 261 (600)
Q Consensus 196 ~gktiGIIGl-G~IG~~vA~~l~~~g~~V~~~d~~~-~~~~a~~~g~~~~------~-l~ell-----~~aDvV~l~~Pl 261 (600)
.|.+|.|.|. |.+|...++.++..|++|++.+... ..+..++.|...+ + .++++ ...|+|+-|+.
T Consensus 29 ~G~~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~~~~~~~~~Gvd~v~D~vG- 107 (182)
T d1v3va2 29 GGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQIGFDAAFNYKTVNSLEEALKKASPDGYDCYFDNVG- 107 (182)
T ss_dssp SSCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEEETTSCSCHHHHHHHHCTTCEEEEEESSC-
T ss_pred CCCEEEEEeCCCchhHHHHHHHHccCCEEEEeCCCHHHHHHHHhhhhhhhcccccccHHHHHHHHhhcCCCceeEEecC-
Confidence 4889999888 6799999999999999999988665 4556777776421 1 22222 33888888775
Q ss_pred CccccccccHhHhccCCCceEEEEccC
Q 007512 262 TPATSKVLNDETFGKMKKGVRIINVAR 288 (600)
Q Consensus 262 ~~~t~~li~~~~l~~mk~gailvNvar 288 (600)
.++ -...+..|+++..++.+|.
T Consensus 108 -~~~----~~~~~~~l~~~G~~v~~G~ 129 (182)
T d1v3va2 108 -GEF----LNTVLSQMKDFGKIAICGA 129 (182)
T ss_dssp -HHH----HHHHGGGEEEEEEEEECCC
T ss_pred -chh----hhhhhhhccCCCeEEeecc
Confidence 221 2456777888888888864
|
| >d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=88.18 E-value=0.23 Score=41.45 Aligned_cols=34 Identities=26% Similarity=0.295 Sum_probs=31.1
Q ss_pred cCCEEEEEecChhHHHHHHHhhcCCCEEEEECCC
Q 007512 196 VGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPY 229 (600)
Q Consensus 196 ~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~ 229 (600)
.+|++.|||-|.+|-++|..+...|.+|..+++.
T Consensus 29 ~~k~vvViGgG~iG~E~A~~l~~~g~~Vtlie~~ 62 (123)
T d1nhpa2 29 EVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDIL 62 (123)
T ss_dssp TCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred CCCEEEEECChHHHHHHHHHhhccceEEEEEEec
Confidence 4789999999999999999999999999998654
|
| >d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Vibrio cholerae [TaxId: 666]
Probab=88.08 E-value=0.27 Score=42.73 Aligned_cols=87 Identities=18% Similarity=0.094 Sum_probs=48.9
Q ss_pred CEEEEEe-cChhHHHHHHHhhc---C-CCEEEEECCCCChhHHHHcCCc----c-cCHHHHhccCCEEEEecCCCccccc
Q 007512 198 KTLAVLG-FGKVGSEVARRAKG---L-GMHVIAHDPYAPADRARAIGVD----L-VSFDEAIATADFISLHMPLTPATSK 267 (600)
Q Consensus 198 ktiGIIG-lG~IG~~vA~~l~~---~-g~~V~~~d~~~~~~~a~~~g~~----~-~~l~ell~~aDvV~l~~Pl~~~t~~ 267 (600)
++||||| .|..|+++.++|.. + ..++..+............+-. . ..-.+.+.++|++++|+|.. .+..
T Consensus 1 mKVaIiGATGyvG~eLi~lLl~~~~~p~~~i~~~ss~~~~gk~~~~~~~~~~~~~~~~~~~~~~~DvvF~alp~~-~s~~ 79 (147)
T d1mb4a1 1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQIGVPAPNFGKDAGMLHDAFDIESLKQLDAVITCQGGS-YTEK 79 (147)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESSCCSSBCCCSSSCCCBCEETTCHHHHTTCSEEEECSCHH-HHHH
T ss_pred CEEEEECCccHHHHHHHHHHHhcCCCCceEEEEeccccccccccccCCcceeeecccchhhhccccEEEEecCch-HHHH
Confidence 4799997 69999999988753 2 3576655332211111111111 1 11235579999999999933 3333
Q ss_pred cccHhHhccCCCceEEEEcc
Q 007512 268 VLNDETFGKMKKGVRIINVA 287 (600)
Q Consensus 268 li~~~~l~~mk~gailvNva 287 (600)
+. .. +..-..++++||.+
T Consensus 80 ~~-~~-l~~~g~~~~VIDlS 97 (147)
T d1mb4a1 80 VY-PA-LRQAGWKGYWIDAA 97 (147)
T ss_dssp HH-HH-HHHTTCCSEEEESS
T ss_pred Hh-HH-HHHcCCceEEEeCC
Confidence 32 22 22233446788887
|
| >d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Pinoresinol-lariciresinol reductase species: Giant arborvitae (Thuja plicata) [TaxId: 3316]
Probab=88.04 E-value=0.35 Score=45.32 Aligned_cols=65 Identities=15% Similarity=0.280 Sum_probs=46.3
Q ss_pred CEEEEEe-cChhHHHHHHHhhcCCCEEEEECCCCCh---hH------HHHcCCccc--------CHHHHhccCCEEEEec
Q 007512 198 KTLAVLG-FGKVGSEVARRAKGLGMHVIAHDPYAPA---DR------ARAIGVDLV--------SFDEAIATADFISLHM 259 (600)
Q Consensus 198 ktiGIIG-lG~IG~~vA~~l~~~g~~V~~~d~~~~~---~~------a~~~g~~~~--------~l~ell~~aDvV~l~~ 259 (600)
+||.|.| .|.||+.+++.|...|++|++.++.... .. ....+++.+ .+.+.+..+|.++.+.
T Consensus 4 ~KILVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~v~~v~~d~~d~~~~~~~~~~~~~~~~~~ 83 (312)
T d1qyda_ 4 SRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEASLDDHQRLVDALKQVDVVISAL 83 (312)
T ss_dssp CCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCCSSCHHHHHHHHHHHTTTCEEECCCSSCHHHHHHHHTTCSEEEECC
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCcccchhHHHHHhhhccCCcEEEEeecccchhhhhhccCcchhhhhh
Confidence 5699999 6999999999999999999998875421 11 122344321 2456788888888887
Q ss_pred CCC
Q 007512 260 PLT 262 (600)
Q Consensus 260 Pl~ 262 (600)
+..
T Consensus 84 ~~~ 86 (312)
T d1qyda_ 84 AGG 86 (312)
T ss_dssp CCS
T ss_pred hhc
Confidence 744
|
| >d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Putative semialdehyde dehydrogenase species: Rice (Oryza sativa) [TaxId: 4530]
Probab=87.98 E-value=0.52 Score=42.11 Aligned_cols=88 Identities=16% Similarity=0.202 Sum_probs=52.3
Q ss_pred CEEEEEe-cChhHHHHHHHhhcC-CCEEEEE-CCCCC---hhHHHHc--CCc----ccCHHHHhccCCEEEEecCCCccc
Q 007512 198 KTLAVLG-FGKVGSEVARRAKGL-GMHVIAH-DPYAP---ADRARAI--GVD----LVSFDEAIATADFISLHMPLTPAT 265 (600)
Q Consensus 198 ktiGIIG-lG~IG~~vA~~l~~~-g~~V~~~-d~~~~---~~~a~~~--g~~----~~~l~ell~~aDvV~l~~Pl~~~t 265 (600)
.+|||+| .|..|+++.+.|..+ .+++... .+... ....... +.. ....++.+.++|++++|+|...
T Consensus 6 ikVaIlGATGyvG~elirLL~~HP~~ei~~l~S~~~aG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvf~alp~~~-- 83 (183)
T d2cvoa1 6 VRIAVLGASGYTGAEIVRLLANHPQFRIKVMTADRKAGEQFGSVFPHLITQDLPNLVAVKDADFSNVDAVFCCLPHGT-- 83 (183)
T ss_dssp EEEEEESCSSHHHHHHHHHHTTCSSEEEEEEECSTTTTSCHHHHCGGGTTSCCCCCBCGGGCCGGGCSEEEECCSSSH--
T ss_pred cEEEEECcccHHHHHHHHHHHhCCCceEEEEeccccCCCccccccccccccccccchhhhhhhhcccceeeeccccch--
Confidence 4799997 699999999999977 5676654 22221 1111110 111 1123456789999999999553
Q ss_pred cccccHhHhccCCCceEEEEccCCcc
Q 007512 266 SKVLNDETFGKMKKGVRIINVARGGV 291 (600)
Q Consensus 266 ~~li~~~~l~~mk~gailvNvarg~i 291 (600)
..+....+.+...+|+-+.+.-
T Consensus 84 ----s~~~~~~l~~~~~~v~~~~~~~ 105 (183)
T d2cvoa1 84 ----TQEIIKGLPQELKIVDLSADFR 105 (183)
T ss_dssp ----HHHHHHTSCSSCEEEECSSTTT
T ss_pred ----HHHHHHHHHhcCcccccchhhh
Confidence 3333344555555555554433
|
| >d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein At5g02240 (T7H20 290) species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=87.94 E-value=0.19 Score=44.95 Aligned_cols=65 Identities=18% Similarity=0.110 Sum_probs=42.4
Q ss_pred CEEEEEe-cChhHHHHHHHhhcCCC--EEEEECCCCChhHHHHcCCcc--------cCHHHHhccCCEEEEecCCC
Q 007512 198 KTLAVLG-FGKVGSEVARRAKGLGM--HVIAHDPYAPADRARAIGVDL--------VSFDEAIATADFISLHMPLT 262 (600)
Q Consensus 198 ktiGIIG-lG~IG~~vA~~l~~~g~--~V~~~d~~~~~~~a~~~g~~~--------~~l~ell~~aDvV~l~~Pl~ 262 (600)
+||.|.| .|.||+.++++|...|. .|+...+..........+++. .++.++++.+|.|+.+....
T Consensus 4 ~tVlVtGatG~iG~~l~~~Ll~~g~~v~v~~~~R~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~d~vi~~a~~~ 79 (252)
T d2q46a1 4 PTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKIGGEADVFIGDITDADSINPAFQGIDALVILTSAV 79 (252)
T ss_dssp CEEEEESTTSTTHHHHHHHHHHTTTTCEEEEEESCHHHHHHTTCCTTEEECCTTSHHHHHHHHTTCSEEEECCCCC
T ss_pred CEEEEECCccHHHHHHHHHHHHCCCcEEEEEEcCCHHHHHhccCCcEEEEeeeccccccccccccceeeEEEEeec
Confidence 5899998 79999999999987775 555555543221111223321 13566788899998776533
|
| >d1phza1 d.58.18.3 (A:19-115) Phenylalanine hydroxylase N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: ACT-like family: Phenylalanine metabolism regulatory domain domain: Phenylalanine hydroxylase N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=87.82 E-value=0.34 Score=39.07 Aligned_cols=55 Identities=7% Similarity=0.175 Sum_probs=41.2
Q ss_pred ccEEEEEecCCCCChhhHHhhhhcCCccccceEeeee-cCCCcEEEEEEeCCCCcH
Q 007512 526 GSIILCRQVDQPGMIGTVGSILGSENVNVSFMSVGRV-APRKHAVMAIGVDEQPRK 580 (600)
Q Consensus 526 ~~~Liv~~~D~pG~Ia~V~~iL~~~~INIa~m~v~R~-~~g~~al~~i~~D~~~~~ 580 (600)
...|++.-.|+||.+..+.+.+++++||+..+.-.-. ....+..-.|+++...++
T Consensus 16 ktSl~f~~~~~pGaL~~vL~~f~~~~INLt~IeSRP~~~~~~~Y~F~id~eg~~~~ 71 (97)
T d1phza1 16 AISLIFSLKEEVGALAKVLRLFEENDINLTHIESRPSRLNKDEYEFFTYLDKRTKP 71 (97)
T ss_dssp CEEEEEEEECCTTHHHHHHHHHHTTTCCTTSEEEEECSSCTTEEEEEECBCGGGHH
T ss_pred cEEEEEEeCCCCCHHHHHHHHHHHCCCCEEEEEeeccCCCCceEEEEEEcccCChH
Confidence 3556777889999999999999999999999986322 223345667777765444
|
| >d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Probab=87.70 E-value=0.25 Score=41.01 Aligned_cols=32 Identities=28% Similarity=0.396 Sum_probs=29.1
Q ss_pred CCEEEEEecChhHHHHHHHhhcCCCEEEEECC
Q 007512 197 GKTLAVLGFGKVGSEVARRAKGLGMHVIAHDP 228 (600)
Q Consensus 197 gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~ 228 (600)
.+++.|||-|.||-++|..++.+|++|..+..
T Consensus 22 p~~i~IiG~G~ig~E~A~~l~~~G~~Vtiv~~ 53 (119)
T d3lada2 22 PGKLGVIGAGVIGLELGSVWARLGAEVTVLEA 53 (119)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCeEEEECCChHHHHHHHHHHHcCCceEEEEe
Confidence 48899999999999999999999999988743
|
| >d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 11-beta-hydroxysteroid dehydrogenase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.49 E-value=0.28 Score=46.43 Aligned_cols=41 Identities=29% Similarity=0.426 Sum_probs=35.6
Q ss_pred ccceeccCCEEEEEecCh-hHHHHHHHhhcCCCEEEEECCCC
Q 007512 190 YVGVSLVGKTLAVLGFGK-VGSEVARRAKGLGMHVIAHDPYA 230 (600)
Q Consensus 190 ~~g~~l~gktiGIIGlG~-IG~~vA~~l~~~g~~V~~~d~~~ 230 (600)
|...-|.||++.|.|-+. ||+++|+.|...|++|+..+++.
T Consensus 7 f~~~~L~GK~alITGassGIG~aiA~~la~~G~~Vil~~r~~ 48 (269)
T d1xu9a_ 7 FRPEMLQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSK 48 (269)
T ss_dssp CCGGGGTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CCccccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence 444459999999998775 99999999999999999999875
|
| >d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=87.47 E-value=0.27 Score=42.80 Aligned_cols=62 Identities=13% Similarity=0.071 Sum_probs=43.5
Q ss_pred EEEEEe-cChhHHHHHHHhhcC---C----CEEEEECCCCChhHHHHc-------CC-------cccCHHHHhccCCEEE
Q 007512 199 TLAVLG-FGKVGSEVARRAKGL---G----MHVIAHDPYAPADRARAI-------GV-------DLVSFDEAIATADFIS 256 (600)
Q Consensus 199 tiGIIG-lG~IG~~vA~~l~~~---g----~~V~~~d~~~~~~~a~~~-------g~-------~~~~l~ell~~aDvV~ 256 (600)
+|.||| .|.+|+++|-.|..- + ..+..||.......+..+ .. ...+..+.+++||+|+
T Consensus 5 KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~l~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvVV 84 (154)
T d5mdha1 5 RVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLLKDVIATDKEEIAFKDLDVAI 84 (154)
T ss_dssp EEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTCCTTEEEEEEESCHHHHTTTCSEEE
T ss_pred EEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEEEecCccchhhhhhhhhhhcccccccccccccCcccccccCCceEEE
Confidence 899999 599999999988632 2 267778876543332221 11 1135778999999999
Q ss_pred EecC
Q 007512 257 LHMP 260 (600)
Q Consensus 257 l~~P 260 (600)
++.-
T Consensus 85 itag 88 (154)
T d5mdha1 85 LVGS 88 (154)
T ss_dssp ECCS
T ss_pred Eecc
Confidence 9874
|
| >d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Thermus thermophilus [TaxId: 274]
Probab=87.35 E-value=0.33 Score=45.42 Aligned_cols=39 Identities=28% Similarity=0.349 Sum_probs=33.6
Q ss_pred ceeccCCEEEEEecC---hhHHHHHHHhhcCCCEEEEECCCC
Q 007512 192 GVSLVGKTLAVLGFG---KVGSEVARRAKGLGMHVIAHDPYA 230 (600)
Q Consensus 192 g~~l~gktiGIIGlG---~IG~~vA~~l~~~g~~V~~~d~~~ 230 (600)
...|.||++.|-|.+ -||+++|++|...|++|+..++..
T Consensus 3 ~~~L~gK~alITGas~~~GIG~aiA~~la~~Ga~V~i~~~~~ 44 (256)
T d1ulua_ 3 TVDLSGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAE 44 (256)
T ss_dssp EECCTTCEEEEESCCCSSSHHHHHHHHHHHTTCEEEEEESSG
T ss_pred CcCCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCcH
Confidence 357999999999974 499999999999999998877653
|
| >d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=87.28 E-value=0.17 Score=42.39 Aligned_cols=32 Identities=25% Similarity=0.225 Sum_probs=28.8
Q ss_pred CEEEEEecChhHHHHHHHhhcCCCEEEEECCC
Q 007512 198 KTLAVLGFGKVGSEVARRAKGLGMHVIAHDPY 229 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~ 229 (600)
+++.|||-|.||-++|..++.+|.+|..+.+.
T Consensus 21 ~~vvIIGgG~iG~E~A~~l~~lG~~Vtii~~~ 52 (122)
T d1h6va2 21 GKTLVVGASYVALECAGFLAGIGLDVTVMVRS 52 (122)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CeEEEECCCccHHHHHHHHhhcCCeEEEEEec
Confidence 68999999999999999999999998877543
|
| >d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=87.21 E-value=0.19 Score=42.06 Aligned_cols=34 Identities=26% Similarity=0.328 Sum_probs=30.7
Q ss_pred CCEEEEEecChhHHHHHHHhhcCCCEEEEECCCC
Q 007512 197 GKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYA 230 (600)
Q Consensus 197 gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~ 230 (600)
.+++.|||.|.||-++|..+..+|++|....+..
T Consensus 25 p~~~viiG~G~iglE~A~~~~~~G~~Vtvi~~~~ 58 (123)
T d1dxla2 25 PKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFAS 58 (123)
T ss_dssp CSEEEESCCSHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred CCeEEEEccchHHHHHHHHHHhcCCeEEEEEEcc
Confidence 4799999999999999999999999999986543
|
| >d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=87.21 E-value=0.33 Score=40.25 Aligned_cols=34 Identities=26% Similarity=0.267 Sum_probs=31.1
Q ss_pred CCEEEEEecChhHHHHHHHhhcCCCEEEEECCCC
Q 007512 197 GKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYA 230 (600)
Q Consensus 197 gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~ 230 (600)
++++.|||-|.+|-++|..|..+|.+|..+++..
T Consensus 32 ~~~vvIiGgG~iG~E~A~~l~~~g~~Vtlv~~~~ 65 (122)
T d1xhca2 32 SGEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGA 65 (122)
T ss_dssp HSEEEEEECSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred CCcEEEECCcHHHHHHHHHhhcccceEEEEeccc
Confidence 4789999999999999999999999999998654
|
| >d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, middle domain species: Escherichia coli [TaxId: 562]
Probab=87.13 E-value=0.28 Score=43.97 Aligned_cols=38 Identities=32% Similarity=0.364 Sum_probs=34.3
Q ss_pred eeccCCEEEEEecChhHHHHHHHhhcCCCEEEEECCCC
Q 007512 193 VSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYA 230 (600)
Q Consensus 193 ~~l~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~ 230 (600)
....+|+|.|||-|..|-+.|..|...|++|..|+...
T Consensus 39 ~~~~~k~V~IIGaGPAGL~AA~~la~~G~~Vtl~E~~~ 76 (179)
T d1ps9a3 39 PAVQKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHS 76 (179)
T ss_dssp SCSSCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSS
T ss_pred CCCCCcEEEEECccHHHHHHHHHHHhhccceEEEeccC
Confidence 35668999999999999999999999999999998754
|
| >d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Escherichia coli [TaxId: 562]
Probab=87.04 E-value=0.35 Score=44.99 Aligned_cols=37 Identities=19% Similarity=0.220 Sum_probs=32.5
Q ss_pred eccCCEEEEEecCh---hHHHHHHHhhcCCCEEEEECCCC
Q 007512 194 SLVGKTLAVLGFGK---VGSEVARRAKGLGMHVIAHDPYA 230 (600)
Q Consensus 194 ~l~gktiGIIGlG~---IG~~vA~~l~~~g~~V~~~d~~~ 230 (600)
.|.||++.|-|-+. ||+++|+.|...|++|+..+++.
T Consensus 2 ~L~gK~~lITGass~~GIG~aiA~~l~~~G~~V~i~~~~~ 41 (258)
T d1qsga_ 2 FLSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQND 41 (258)
T ss_dssp TTTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESST
T ss_pred cCCCCEEEEECCCCchhHHHHHHHHHHHcCCEEEEEeCCH
Confidence 37899999999764 99999999999999999887764
|
| >d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=86.99 E-value=0.54 Score=40.14 Aligned_cols=31 Identities=32% Similarity=0.428 Sum_probs=25.2
Q ss_pred EEEEEe-cChhHHHHHHHhh-cCCCEEEE-ECCC
Q 007512 199 TLAVLG-FGKVGSEVARRAK-GLGMHVIA-HDPY 229 (600)
Q Consensus 199 tiGIIG-lG~IG~~vA~~l~-~~g~~V~~-~d~~ 229 (600)
+|+|+| .|+||+.+++.+. .-++++.+ +|+.
T Consensus 1 kI~v~Ga~GrMG~~i~~~i~~~~~~~l~~~~d~~ 34 (135)
T d1yl7a1 1 RVGVLGAKGKVGATMVRAVAAADDLTLSAELDAG 34 (135)
T ss_dssp EEEEETTTSHHHHHHHHHHHHSTTSEEEEEECTT
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecC
Confidence 699999 6999999999887 45788764 6754
|
| >d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Probab=86.80 E-value=0.26 Score=41.37 Aligned_cols=34 Identities=21% Similarity=0.253 Sum_probs=30.9
Q ss_pred CCEEEEEecChhHHHHHHHhhcCCCEEEEECCCC
Q 007512 197 GKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYA 230 (600)
Q Consensus 197 gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~ 230 (600)
.+++.|||-|.||-++|..++.+|.+|..+....
T Consensus 26 p~~vvIiGgG~IG~E~A~~~~~~G~~Vtive~~~ 59 (125)
T d1ojta2 26 PGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMD 59 (125)
T ss_dssp CSEEEEESCSHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred CCeEEEECCCHHHHHHHHHhhcCCCEEEEEEeec
Confidence 4799999999999999999999999999987543
|
| >d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Molybdenum cofactor biosynthesis protein MoeB domain: Molybdenum cofactor biosynthesis protein MoeB species: Escherichia coli [TaxId: 562]
Probab=86.76 E-value=0.17 Score=47.35 Aligned_cols=37 Identities=16% Similarity=0.328 Sum_probs=33.5
Q ss_pred eccCCEEEEEecChhHHHHHHHhhcCCC-EEEEECCCC
Q 007512 194 SLVGKTLAVLGFGKVGSEVARRAKGLGM-HVIAHDPYA 230 (600)
Q Consensus 194 ~l~gktiGIIGlG~IG~~vA~~l~~~g~-~V~~~d~~~ 230 (600)
.|++++|.|||+|-+|..+|..|...|. ++..+|+..
T Consensus 27 kL~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ 64 (247)
T d1jw9b_ 27 ALKDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDT 64 (247)
T ss_dssp HHHHCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred HHhCCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCcc
Confidence 5999999999999999999999998886 888888765
|
| >d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Escherichia coli [TaxId: 562]
Probab=86.75 E-value=0.38 Score=47.10 Aligned_cols=33 Identities=27% Similarity=0.204 Sum_probs=27.8
Q ss_pred CEEEEEe-cChhHHHHHHHhhcCCCEEEEECCCC
Q 007512 198 KTLAVLG-FGKVGSEVARRAKGLGMHVIAHDPYA 230 (600)
Q Consensus 198 ktiGIIG-lG~IG~~vA~~l~~~g~~V~~~d~~~ 230 (600)
|.+.|.| .|.||+.+++.|...|.+|++.|+..
T Consensus 2 K~vLITGatGfiGs~lv~~Ll~~g~~V~~~~r~~ 35 (357)
T d1db3a_ 2 KVALITGVTGQDGSYLAEFLLEKGYEVHGIKRRA 35 (357)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEECC--
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCcCEEEEEECCC
Confidence 5566777 99999999999999999999999754
|
| >d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase species: Streptomyces hydrogenans [TaxId: 1905]
Probab=86.71 E-value=0.24 Score=46.76 Aligned_cols=37 Identities=35% Similarity=0.495 Sum_probs=33.3
Q ss_pred eccCCEEEEEecC-hhHHHHHHHhhcCCCEEEEECCCC
Q 007512 194 SLVGKTLAVLGFG-KVGSEVARRAKGLGMHVIAHDPYA 230 (600)
Q Consensus 194 ~l~gktiGIIGlG-~IG~~vA~~l~~~g~~V~~~d~~~ 230 (600)
+|.||++.|-|-+ -||+++|++|...|++|+..|++.
T Consensus 2 dL~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~ 39 (254)
T d1hdca_ 2 DLSGKTVIITGGARGLGAEAARQAVAAGARVVLADVLD 39 (254)
T ss_dssp CCCCSEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CCCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence 5899999999876 599999999999999999998764
|
| >d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Transcriptional repressor Rex, C-terminal domain domain: Transcriptional repressor Rex, C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=86.26 E-value=0.17 Score=42.74 Aligned_cols=62 Identities=18% Similarity=0.289 Sum_probs=38.3
Q ss_pred EEEEEecChhHHHHHHHhh-cCCCEEEEE-CCCCChhHHHHcCCccc---CHHHHh-ccCCEEEEecC
Q 007512 199 TLAVLGFGKVGSEVARRAK-GLGMHVIAH-DPYAPADRARAIGVDLV---SFDEAI-ATADFISLHMP 260 (600)
Q Consensus 199 tiGIIGlG~IG~~vA~~l~-~~g~~V~~~-d~~~~~~~a~~~g~~~~---~l~ell-~~aDvV~l~~P 260 (600)
++.|+|.|.+|+.+++.+. .-+++++++ |.++...-..=.|+... .++++. ...++.++++|
T Consensus 5 ~v~I~GaG~~G~~l~~~l~~~~~~~iv~fiDdd~~k~G~~I~Gi~V~~~~~l~~~~~~~i~iai~~i~ 72 (126)
T d2dt5a2 5 GLCIVGMGRLGSALADYPGFGESFELRGFFDVDPEKVGRPVRGGVIEHVDLLPQRVPGRIEIALLTVP 72 (126)
T ss_dssp EEEEECCSHHHHHHHHCSCCCSSEEEEEEEESCTTTTTCEETTEEEEEGGGHHHHSTTTCCEEEECSC
T ss_pred eEEEEcCCHHHHHHHHhHhhcCCcEEEEEEeCchHhcCCEECCEEEecHHHHHHHHhhcccEEEEeCC
Confidence 7999999999999998776 448899886 54442211111243322 333433 33566666666
|
| >d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=86.21 E-value=0.4 Score=40.48 Aligned_cols=35 Identities=40% Similarity=0.445 Sum_probs=31.8
Q ss_pred cCCEEEEEecChhHHHHHHHhhcCCCEEEEECCCC
Q 007512 196 VGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYA 230 (600)
Q Consensus 196 ~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~ 230 (600)
.++++.|||-|.+|-++|..++..|.+|..+++..
T Consensus 34 ~~k~v~VIGgG~iG~E~A~~l~~~g~~Vtvie~~~ 68 (133)
T d1q1ra2 34 ADNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAA 68 (133)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred cCCEEEEECCchHHHHHHHHHHhhCcceeeeeecc
Confidence 36899999999999999999999999999998654
|
| >d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Retinal dehydrogenase/reductase 3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.06 E-value=0.3 Score=45.93 Aligned_cols=39 Identities=26% Similarity=0.372 Sum_probs=34.7
Q ss_pred ceeccCCEEEEEec-ChhHHHHHHHhhcCCCEEEEECCCC
Q 007512 192 GVSLVGKTLAVLGF-GKVGSEVARRAKGLGMHVIAHDPYA 230 (600)
Q Consensus 192 g~~l~gktiGIIGl-G~IG~~vA~~l~~~g~~V~~~d~~~ 230 (600)
|..|.||++.|-|- +-||+++|++|...|++|+..|++.
T Consensus 1 g~rl~GK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~ 40 (250)
T d1ydea1 1 GTRYAGKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDE 40 (250)
T ss_dssp CCTTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CCCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence 56789999999986 6899999999999999999998763
|
| >d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Mannitol dehydrogenase species: Mushroom (Agaricus bisporus) [TaxId: 5341]
Probab=86.01 E-value=0.3 Score=46.01 Aligned_cols=39 Identities=28% Similarity=0.344 Sum_probs=34.6
Q ss_pred ceeccCCEEEEEecCh-hHHHHHHHhhcCCCEEEEECCCC
Q 007512 192 GVSLVGKTLAVLGFGK-VGSEVARRAKGLGMHVIAHDPYA 230 (600)
Q Consensus 192 g~~l~gktiGIIGlG~-IG~~vA~~l~~~g~~V~~~d~~~ 230 (600)
...|.||++.|-|-+. ||+++|++|...|++|+..|++.
T Consensus 4 ~m~l~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~ 43 (260)
T d1h5qa_ 4 TISFVNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSA 43 (260)
T ss_dssp EECCTTEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSC
T ss_pred cccCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence 3478999999998765 99999999999999999998876
|
| >d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.93 E-value=0.56 Score=43.68 Aligned_cols=38 Identities=24% Similarity=0.386 Sum_probs=33.5
Q ss_pred eeccCCEEEEEecC-hhHHHHHHHhhcCCCEEEEECCCC
Q 007512 193 VSLVGKTLAVLGFG-KVGSEVARRAKGLGMHVIAHDPYA 230 (600)
Q Consensus 193 ~~l~gktiGIIGlG-~IG~~vA~~l~~~g~~V~~~d~~~ 230 (600)
..|.||++.|.|-+ -||+++|++|...|++|+..|++.
T Consensus 3 ~~L~GK~~lITGas~GIG~aia~~la~~G~~V~~~~r~~ 41 (244)
T d1pr9a_ 3 LFLAGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQ 41 (244)
T ss_dssp CCCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCH
Confidence 36899999999765 599999999999999999999764
|
| >d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=85.52 E-value=0.35 Score=39.64 Aligned_cols=34 Identities=26% Similarity=0.361 Sum_probs=30.7
Q ss_pred CCEEEEEecChhHHHHHHHhhcCCCEEEEECCCC
Q 007512 197 GKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYA 230 (600)
Q Consensus 197 gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~ 230 (600)
.+++.|||-|.+|-++|..++.+|.+|..+++..
T Consensus 21 p~~vvIiGgG~~G~E~A~~l~~~g~~Vtlve~~~ 54 (115)
T d1lvla2 21 PQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARE 54 (115)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred CCeEEEECCCHHHHHHHHHHhhcccceEEEeeec
Confidence 4799999999999999999999999999987643
|
| >d1pjca2 c.23.12.2 (A:1-135,A:304-361) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Formate/glycerate dehydrogenase catalytic domain-like family: L-alanine dehydrogenase-like domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=85.31 E-value=0.7 Score=41.83 Aligned_cols=94 Identities=12% Similarity=0.085 Sum_probs=66.2
Q ss_pred HHHHHhhcCCCEEEEECCC-----CChhHHHHcCCcccC-HHHHhccCCEEEEecCCCccccccccHhHhccCCCceEEE
Q 007512 211 EVARRAKGLGMHVIAHDPY-----APADRARAIGVDLVS-FDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRII 284 (600)
Q Consensus 211 ~vA~~l~~~g~~V~~~d~~-----~~~~~a~~~g~~~~~-l~ell~~aDvV~l~~Pl~~~t~~li~~~~l~~mk~gailv 284 (600)
..++++...|++|++=.-. .+.+...+.|+..++ .++++ +||+|+-.-|.+ .+++..||+|.+++
T Consensus 21 ~~vkkl~~~G~~V~VE~gaG~~a~fsD~~Y~~aGa~i~~~~~~~~-~~diilkv~~p~--------~~e~~~lk~~~~li 91 (193)
T d1pjca2 21 SSVRTLVEAGHTVFIETQAGIGAGFADQDYVQAGAQVVPSAKDAW-SREMVVKVKEPL--------PAEYDLMQKDQLLF 91 (193)
T ss_dssp HHHHHHHTTTCEEEEETTTTGGGTCCHHHHHHHTCEEESSHHHHH-TSSEEECSSCCC--------GGGGGGCCTTCEEE
T ss_pred HHHHHHHHCCCEEEEEcCcccccCCCHHHHHhhcceeeecccccc-ccceEEEeccCC--------HHHHHhhhcCceEE
Confidence 4677888899999985322 245667778888764 45555 689987655433 44688899999999
Q ss_pred EccCCccccHHHHHHhHhcCCceEEEEeccC
Q 007512 285 NVARGGVIDEEALVRALDSGRVAQAALDVFT 315 (600)
Q Consensus 285 Nvarg~ivde~aL~~aL~~g~i~ga~lDv~~ 315 (600)
-.-.. ....++.++|.+.+|-..++|...
T Consensus 92 ~~l~p--~~~~ell~~l~~~~it~~s~E~ip 120 (193)
T d1pjca2 92 TYLHL--AAARELTEQLMRVGLTAIAYETVE 120 (193)
T ss_dssp ECCCG--GGCHHHHHHHHHHTCEEEEGGGCC
T ss_pred EecCc--ccchHHHHHHHHcCCEEEEeeecc
Confidence 87543 334578888988888777766543
|
| >d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Thermotoga maritima [TaxId: 2336]
Probab=85.28 E-value=0.34 Score=41.04 Aligned_cols=28 Identities=18% Similarity=0.536 Sum_probs=24.7
Q ss_pred CEEEEEec-ChhHHHHHHHhhcCCCEEEE
Q 007512 198 KTLAVLGF-GKVGSEVARRAKGLGMHVIA 225 (600)
Q Consensus 198 ktiGIIGl-G~IG~~vA~~l~~~g~~V~~ 225 (600)
++|||+|+ |+||+.+++.+...|+++.+
T Consensus 1 mki~i~G~~GrMG~~i~~~~~~~~~~l~~ 29 (128)
T d1vm6a3 1 MKYGIVGYSGRMGQEIQKVFSEKGHELVL 29 (128)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEE
T ss_pred CEEEEECCCCHHHHHHHHHHhcCCCeEEE
Confidence 47999996 99999999999888888764
|
| >d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Negative transcriptional regulator NmrA species: Aspergillus nidulans [TaxId: 162425]
Probab=85.10 E-value=0.43 Score=46.28 Aligned_cols=67 Identities=27% Similarity=0.315 Sum_probs=47.7
Q ss_pred CCEEEEEe-cChhHHHHHHHhhcCCCEEEEECCCCChhHHH----HcCCcc-----cC----HHHHhccCCEEEEecCCC
Q 007512 197 GKTLAVLG-FGKVGSEVARRAKGLGMHVIAHDPYAPADRAR----AIGVDL-----VS----FDEAIATADFISLHMPLT 262 (600)
Q Consensus 197 gktiGIIG-lG~IG~~vA~~l~~~g~~V~~~d~~~~~~~a~----~~g~~~-----~~----l~ell~~aDvV~l~~Pl~ 262 (600)
.|||.|+| .|.||+.+++.|.+.|++|++..++.+...+. ..|++. .+ ++.++..+|.+++..+..
T Consensus 3 kktIlVtGatG~iG~~lv~~Ll~~G~~V~~l~R~~~~~~~~~~~~~~~v~~~~gD~~d~~~~~~~a~~~~~~~~~~~~~~ 82 (350)
T d1xgka_ 3 KKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGLIAEELQAIPNVTLFQGPLLNNVPLMDTLFEGAHLAFINTTSQ 82 (350)
T ss_dssp CCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSCSHHHHHHHTSTTEEEEESCCTTCHHHHHHHHTTCSEEEECCCST
T ss_pred CCEEEEECCChHHHHHHHHHHHhCCCeEEEEECCcchhhhhhhcccCCCEEEEeeCCCcHHHHHHHhcCCceEEeecccc
Confidence 57999998 69999999999999999998886554322221 124432 11 456788899998877754
Q ss_pred c
Q 007512 263 P 263 (600)
Q Consensus 263 ~ 263 (600)
.
T Consensus 83 ~ 83 (350)
T d1xgka_ 83 A 83 (350)
T ss_dssp T
T ss_pred c
Confidence 3
|
| >d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Rhodotorula gracilis [TaxId: 5286]
Probab=84.91 E-value=0.36 Score=43.79 Aligned_cols=34 Identities=26% Similarity=0.192 Sum_probs=31.1
Q ss_pred CCEEEEEecChhHHHHHHHhhcCCCEEEEECCCC
Q 007512 197 GKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYA 230 (600)
Q Consensus 197 gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~ 230 (600)
-|+|.|||-|..|-+.|..|+..|.+|..+|+..
T Consensus 6 ~~kVvVIGaGiaGl~~A~~L~~~G~~V~vier~~ 39 (268)
T d1c0pa1 6 QKRVVVLGSGVIGLSSALILARKGYSVHILARDL 39 (268)
T ss_dssp SCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred CCcEEEECccHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 4689999999999999999999999999999753
|
| >d2g17a1 c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC species: Salmonella typhimurium [TaxId: 90371]
Probab=84.88 E-value=0.6 Score=41.38 Aligned_cols=91 Identities=13% Similarity=0.149 Sum_probs=54.9
Q ss_pred CEEEEEe-cChhHHHHHHHhhcC-CCEEEEE---CC--CCChhHHHH----cCC---c---ccCHHHHhccCCEEEEecC
Q 007512 198 KTLAVLG-FGKVGSEVARRAKGL-GMHVIAH---DP--YAPADRARA----IGV---D---LVSFDEAIATADFISLHMP 260 (600)
Q Consensus 198 ktiGIIG-lG~IG~~vA~~l~~~-g~~V~~~---d~--~~~~~~a~~----~g~---~---~~~l~ell~~aDvV~l~~P 260 (600)
.+|+|+| .|..|+++.+.|..+ .+++... .. ......... .+. . ..+.+.....+|++++|+|
T Consensus 2 ikVaIiGATGyvG~eLlrlL~~HP~~ei~~l~~~s~~~~aGk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvf~alp 81 (179)
T d2g17a1 2 LNTLIVGASGYAGAELVSYVNRHPHMTITALTVSAQSNDAGKLISDLHPQLKGIVDLPLQPMSDVRDFSADVDVVFLATA 81 (179)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHCTTEEEEEEEEETTCTTTTCBHHHHCGGGTTTCCCBEEEESCGGGTCTTCCEEEECSC
T ss_pred cEEEEECcccHHHHHHHHHHHhCCCCceEeeEeecccccccccccccccccccccccccccchhhhhhhcccceeecccc
Confidence 3799999 899999999999987 6777543 11 111111110 011 1 1134456788999999999
Q ss_pred CCccccccccHhHhccCCCceEEEEccCCcccc
Q 007512 261 LTPATSKVLNDETFGKMKKGVRIINVARGGVID 293 (600)
Q Consensus 261 l~~~t~~li~~~~l~~mk~gailvNvarg~ivd 293 (600)
... ...+ .-...+.|..+||.+..--.+
T Consensus 82 ~~~-s~~~----~~~~~~~~~~vIDlSadfRl~ 109 (179)
T d2g17a1 82 HEV-SHDL----APQFLQAGCVVFDLSGAFRVN 109 (179)
T ss_dssp HHH-HHHH----HHHHHHTTCEEEECSSTTSSS
T ss_pred chh-HHHH----hhhhhhcCceeeccccccccc
Confidence 332 1111 122246789999998544333
|
| >d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Xylitol dehydrogenase species: Gluconobacter oxydans [TaxId: 442]
Probab=84.79 E-value=0.34 Score=45.70 Aligned_cols=37 Identities=27% Similarity=0.297 Sum_probs=32.9
Q ss_pred eccCCEEEEEecC-hhHHHHHHHhhcCCCEEEEECCCC
Q 007512 194 SLVGKTLAVLGFG-KVGSEVARRAKGLGMHVIAHDPYA 230 (600)
Q Consensus 194 ~l~gktiGIIGlG-~IG~~vA~~l~~~g~~V~~~d~~~ 230 (600)
.|.||++.|-|-+ -||+++|++|...|++|+..|++.
T Consensus 2 rL~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~ 39 (260)
T d1zema1 2 KFNGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNR 39 (260)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence 5789999999875 599999999999999999999764
|
| >d2f1ka1 a.100.1.12 (A:166-279) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: TyrA dimerization domain-like domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=84.68 E-value=0.0075 Score=50.90 Aligned_cols=75 Identities=9% Similarity=0.043 Sum_probs=54.9
Q ss_pred Chhhhhccc--chHHHHHHHH-----------HHHHHHhcCCCCceEEEEEEeecCCCCccccccccHHHHHhhchhhhc
Q 007512 375 PAEVLTELK--PFVELAEKLG-----------RLAVQLVAGGSGVKTVKVSYASSRAPDDLDTRLLRAMITKGLIEPISD 441 (600)
Q Consensus 375 ~~~~~~~~~--p~~~la~~lG-----------~l~~qL~~g~~~~k~v~i~~~Gs~a~~~~~~~~~~~a~l~GlL~~~~~ 441 (600)
|+..+..++ ||+.....+. .++..+++| +|++++++..|++. ||.++...|+.-+...|+.+..
T Consensus 5 HD~~~A~iSHLPHlia~~l~~~~~~~~~~~~~~~~~~~ag~--gfrD~tRiA~s~p~-mW~dI~~~N~~~i~~~l~~~~~ 81 (114)
T d2f1ka1 5 HDQAVAWISHLPVMVSAALIQACAGEKDGDILKLAQNLASS--GFRDTSRVGGGNPE-LGTMMATYNQRALLKSLQDYRQ 81 (114)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHHTCSCHHHHHHHHHHCCH--HHHHHHTGGGSCHH-HHHHHHHHSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHhhhhhhhHHHHHHHhhh--hHHHHHHHHccCHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 455555666 6654333332 234567777 89999999999998 9999999999888888888877
Q ss_pred cchhhccHHHH
Q 007512 442 VFVNLVNADYT 452 (600)
Q Consensus 442 ~~vn~vnA~~~ 452 (600)
...++.++..-
T Consensus 82 ~L~~l~~~l~~ 92 (114)
T d2f1ka1 82 HLDQLITLISN 92 (114)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHc
Confidence 76666666543
|
| >d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR) species: Human (Homo sapiens), [TaxId: 9606]
Probab=84.63 E-value=0.75 Score=43.64 Aligned_cols=39 Identities=18% Similarity=0.193 Sum_probs=35.3
Q ss_pred ceeccCCEEEEEe-cChhHHHHHHHhhcCCCEEEEECCCC
Q 007512 192 GVSLVGKTLAVLG-FGKVGSEVARRAKGLGMHVIAHDPYA 230 (600)
Q Consensus 192 g~~l~gktiGIIG-lG~IG~~vA~~l~~~g~~V~~~d~~~ 230 (600)
..+|.||++.|-| .|-||+++|+.|...|++|++.|++.
T Consensus 20 ~~~l~gK~alITGas~GIG~aiA~~la~~Ga~Vii~~r~~ 59 (294)
T d1w6ua_ 20 PNSFQGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKM 59 (294)
T ss_dssp TTTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CCCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCH
Confidence 3589999999997 78999999999999999999998764
|
| >d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), II [TaxId: 4076]
Probab=84.61 E-value=0.41 Score=45.07 Aligned_cols=37 Identities=24% Similarity=0.265 Sum_probs=33.1
Q ss_pred eccCCEEEEEecC-hhHHHHHHHhhcCCCEEEEECCCC
Q 007512 194 SLVGKTLAVLGFG-KVGSEVARRAKGLGMHVIAHDPYA 230 (600)
Q Consensus 194 ~l~gktiGIIGlG-~IG~~vA~~l~~~g~~V~~~d~~~ 230 (600)
.|.||++.|-|-+ -||+++|++|...|++|+..|++.
T Consensus 5 ~L~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~ 42 (259)
T d2ae2a_ 5 NLEGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQ 42 (259)
T ss_dssp CCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence 6889999999876 599999999999999999998753
|
| >d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: L-aminoacid oxidase species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]
Probab=84.51 E-value=0.32 Score=45.52 Aligned_cols=35 Identities=23% Similarity=0.300 Sum_probs=31.8
Q ss_pred cCCEEEEEecChhHHHHHHHhhcCCCEEEEECCCC
Q 007512 196 VGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYA 230 (600)
Q Consensus 196 ~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~ 230 (600)
..|+|.|||-|..|-+.|..|+..|++|.+++...
T Consensus 29 ~pkkV~IIGaG~aGLsaA~~L~~~G~~V~vlE~~~ 63 (370)
T d2iida1 29 NPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASE 63 (370)
T ss_dssp SCCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 45799999999999999999999999999998653
|
| >d1dssg1 c.2.1.3 (G:1-148,G:313-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {South China Sea lobster (Palinurus versicolor) [TaxId: 150436]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: South China Sea lobster (Palinurus versicolor) [TaxId: 150436]
Probab=84.14 E-value=0.37 Score=42.84 Aligned_cols=35 Identities=34% Similarity=0.706 Sum_probs=28.9
Q ss_pred EEEEEecChhHHHHHHHhhcCCCEEEEE-CCCCChh
Q 007512 199 TLAVLGFGKVGSEVARRAKGLGMHVIAH-DPYAPAD 233 (600)
Q Consensus 199 tiGIIGlG~IG~~vA~~l~~~g~~V~~~-d~~~~~~ 233 (600)
+|||=|||+||+.+.|.+...+.+|.+. |+..+.+
T Consensus 2 kIgINGfGRIGR~~~R~~~~~~~~ivaINd~~~~~~ 37 (169)
T d1dssg1 2 KIGINGFGRIGRLVLRAALEMGAQVVAVNDPFIALE 37 (169)
T ss_dssp CEEEECCSHHHHHHHHHHHHHTCCEEEEECTTSCHH
T ss_pred eEEEECCcHHHHHHHHHHHhCCCcEEEECCCCcCHH
Confidence 7999999999999999998777888776 5666544
|
| >d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus, TTHB020 [TaxId: 274]
Probab=83.93 E-value=0.37 Score=44.96 Aligned_cols=37 Identities=27% Similarity=0.319 Sum_probs=33.1
Q ss_pred eccCCEEEEEecCh-hHHHHHHHhhcCCCEEEEECCCC
Q 007512 194 SLVGKTLAVLGFGK-VGSEVARRAKGLGMHVIAHDPYA 230 (600)
Q Consensus 194 ~l~gktiGIIGlG~-IG~~vA~~l~~~g~~V~~~d~~~ 230 (600)
.|.||++.|.|-+. ||+++|+.|...|++|+..+++.
T Consensus 2 ~l~gK~alItGas~GIG~aia~~l~~~G~~V~~~~r~~ 39 (241)
T d2a4ka1 2 RLSGKTILVTGAASGIGRAALDLFAREGASLVAVDREE 39 (241)
T ss_dssp TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred cCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence 47899999998776 99999999999999999988764
|
| >d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=83.81 E-value=0.77 Score=42.67 Aligned_cols=37 Identities=22% Similarity=0.346 Sum_probs=32.8
Q ss_pred eccCCEEEEEecC-hhHHHHHHHhhcCCCEEEEECCCC
Q 007512 194 SLVGKTLAVLGFG-KVGSEVARRAKGLGMHVIAHDPYA 230 (600)
Q Consensus 194 ~l~gktiGIIGlG-~IG~~vA~~l~~~g~~V~~~d~~~ 230 (600)
.|.||++.|-|-+ -||+++|++|...|++|+..|++.
T Consensus 2 dl~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~ 39 (242)
T d1cyda_ 2 NFSGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTN 39 (242)
T ss_dssp CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence 4789999999865 699999999999999999998763
|
| >d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Dihydroxypyridine hydroxylase DhpH species: Arthrobacter nicotinovorans [TaxId: 29320]
Probab=83.40 E-value=0.56 Score=42.85 Aligned_cols=35 Identities=20% Similarity=0.173 Sum_probs=31.9
Q ss_pred cCCEEEEEecChhHHHHHHHhhcCCCEEEEECCCC
Q 007512 196 VGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYA 230 (600)
Q Consensus 196 ~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~ 230 (600)
..++|.|||.|..|-.+|..|+..|.+|..+++..
T Consensus 3 ~~~kV~IiGaG~aGl~~A~~L~~~G~~v~v~Er~~ 37 (265)
T d2voua1 3 TTDRIAVVGGSISGLTAALMLRDAGVDVDVYERSP 37 (265)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred CCCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 46799999999999999999999999999999754
|
| >d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Gluconate 5-dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=83.34 E-value=0.66 Score=43.41 Aligned_cols=37 Identities=22% Similarity=0.251 Sum_probs=33.1
Q ss_pred eccCCEEEEEecC-hhHHHHHHHhhcCCCEEEEECCCC
Q 007512 194 SLVGKTLAVLGFG-KVGSEVARRAKGLGMHVIAHDPYA 230 (600)
Q Consensus 194 ~l~gktiGIIGlG-~IG~~vA~~l~~~g~~V~~~d~~~ 230 (600)
+|.||++.|-|-+ -||+++|++|...|++|+..|++.
T Consensus 2 ~l~gK~~lITGas~GIG~aia~~la~~Ga~V~i~~r~~ 39 (251)
T d1vl8a_ 2 DLRGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNL 39 (251)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence 6889999999875 599999999999999999998764
|
| >d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: DTDP-4-dehydrorhamnose reductase RfbD species: Clostridium acetobutylicum [TaxId: 1488]
Probab=83.23 E-value=0.67 Score=42.81 Aligned_cols=56 Identities=16% Similarity=0.342 Sum_probs=40.3
Q ss_pred CEEEEEec-ChhHHHHHHHhhcCCCEEEEECCCC-ChhHHHHcCCcccCHHHHhc--cCCEEEEecC
Q 007512 198 KTLAVLGF-GKVGSEVARRAKGLGMHVIAHDPYA-PADRARAIGVDLVSFDEAIA--TADFISLHMP 260 (600)
Q Consensus 198 ktiGIIGl-G~IG~~vA~~l~~~g~~V~~~d~~~-~~~~a~~~g~~~~~l~ell~--~aDvV~l~~P 260 (600)
++|.|.|- |.||+.+++.|+..|.+|++.|+.. +.. ...+++++++ ..|+|+-+.-
T Consensus 2 MKIlItGasGfiG~~l~~~L~~~g~~Vi~~~r~~~D~~-------d~~~~~~~l~~~~~d~vih~a~ 61 (281)
T d1vl0a_ 2 MKILITGANGQLGREIQKQLKGKNVEVIPTDVQDLDIT-------NVLAVNKFFNEKKPNVVINCAA 61 (281)
T ss_dssp EEEEEESTTSHHHHHHHHHHTTSSEEEEEECTTTCCTT-------CHHHHHHHHHHHCCSEEEECCC
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCEEEEeechhccCC-------CHHHHHHHHHHcCCCEEEeecc
Confidence 47899996 9999999999999999999999764 110 1123455665 4588765543
|
| >d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=83.08 E-value=0.35 Score=45.67 Aligned_cols=37 Identities=27% Similarity=0.342 Sum_probs=33.2
Q ss_pred eccCCEEEEEecCh-hHHHHHHHhhcCCCEEEEECCCC
Q 007512 194 SLVGKTLAVLGFGK-VGSEVARRAKGLGMHVIAHDPYA 230 (600)
Q Consensus 194 ~l~gktiGIIGlG~-IG~~vA~~l~~~g~~V~~~d~~~ 230 (600)
.|+||++.|-|-+. ||+++|++|...|++|+..|++.
T Consensus 5 ~LkgK~alVTGas~GIG~aiA~~la~~Ga~V~~~~r~~ 42 (259)
T d1xq1a_ 5 SLKAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNE 42 (259)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence 68999999998765 99999999999999999998764
|
| >d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Escherichia coli [TaxId: 562]
Probab=82.98 E-value=0.51 Score=44.00 Aligned_cols=37 Identities=24% Similarity=0.326 Sum_probs=32.0
Q ss_pred eccCCEEEEEec-ChhHHHHHHHhhcCCCEEEEECCCC
Q 007512 194 SLVGKTLAVLGF-GKVGSEVARRAKGLGMHVIAHDPYA 230 (600)
Q Consensus 194 ~l~gktiGIIGl-G~IG~~vA~~l~~~g~~V~~~d~~~ 230 (600)
.|.||++-|-|- +-||+++|++|...|++|+..|++.
T Consensus 1 dl~gK~alITGas~GIG~a~a~~l~~~G~~Vv~~~r~~ 38 (243)
T d1q7ba_ 1 NFEGKIALVTGASRGIGRAIAETLAARGAKVIGTATSE 38 (243)
T ss_dssp CCTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 378999988875 5699999999999999999998764
|
| >d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: B. subtilis YhfP homologue species: Bacillus stearothermophilus [TaxId: 1422]
Probab=82.87 E-value=0.73 Score=40.93 Aligned_cols=50 Identities=28% Similarity=0.282 Sum_probs=40.3
Q ss_pred ceeccCCEEEEEe-cChhHHHHHHHhhcCCCEEEEECCCC-ChhHHHHcCCc
Q 007512 192 GVSLVGKTLAVLG-FGKVGSEVARRAKGLGMHVIAHDPYA-PADRARAIGVD 241 (600)
Q Consensus 192 g~~l~gktiGIIG-lG~IG~~vA~~l~~~g~~V~~~d~~~-~~~~a~~~g~~ 241 (600)
|..-.|.+|.|.| -|-+|....+.++..|++|++...+. ..+.+++.|..
T Consensus 27 g~~~~g~~VLI~gaaGGVG~~aiQlak~~Ga~Viat~~s~~k~~~~~~lGa~ 78 (176)
T d1xa0a2 27 GLTPERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYLRVLGAK 78 (176)
T ss_dssp TCCGGGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHHHHTTCS
T ss_pred CCCCCCCEEEEEeccchHHHHHHHHHHHcCCceEEecCchHHHHHHHhcccc
Confidence 4455688999998 69999999999999999999987654 56677777764
|
| >d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Klebsiella pneumoniae [TaxId: 573]
Probab=82.87 E-value=0.5 Score=45.74 Aligned_cols=35 Identities=23% Similarity=0.319 Sum_probs=32.0
Q ss_pred cCCEEEEEecChhHHHHHHHhhcCCCEEEEECCCC
Q 007512 196 VGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYA 230 (600)
Q Consensus 196 ~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~ 230 (600)
+.|+|.|||.|.-|-..|..|...|.+|++++.+.
T Consensus 1 k~KKI~IIGaG~sGL~aA~~L~k~G~~V~viEk~~ 35 (314)
T d2bi7a1 1 KSKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRD 35 (314)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSS
T ss_pred CCCEEEEECCcHHHHHHHHHHHhCCCCEEEEECCC
Confidence 36899999999999999999998899999998764
|
| >d1duvg2 c.78.1.1 (G:151-333) Ornithine transcarbamoylase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Ornithine transcarbamoylase species: Escherichia coli [TaxId: 562]
Probab=82.76 E-value=1.1 Score=39.75 Aligned_cols=94 Identities=18% Similarity=0.162 Sum_probs=63.3
Q ss_pred eccCCEEEEEecC--hhHHHHHHHhhcCCCEEEEECCCC---Chh-------HHHHcCCc---ccCHHHHhccCCEEEEe
Q 007512 194 SLVGKTLAVLGFG--KVGSEVARRAKGLGMHVIAHDPYA---PAD-------RARAIGVD---LVSFDEAIATADFISLH 258 (600)
Q Consensus 194 ~l~gktiGIIGlG--~IG~~vA~~l~~~g~~V~~~d~~~---~~~-------~a~~~g~~---~~~l~ell~~aDvV~l~ 258 (600)
.+.|.+|++||=| ++..+++..+..||+++..+-|.. +.+ .+...|.. ..++++.++.+|+|..-
T Consensus 2 ~~~~l~i~~vGD~~nnv~~Sli~~~~~~g~~l~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvyt~ 81 (183)
T d1duvg2 2 AFNEMTLVYAGDARNNMGNSMLEAAALTGLDLRLVAPQACWPEAALVTECRALAQQNGGNITLTEDVAKGVEGADFIYTD 81 (183)
T ss_dssp CGGGCEEEEESCTTSHHHHHHHHHHHHHCCEEEEECCGGGCCCHHHHHHHHHHHHHTTCEEEEESCHHHHHTTCSEEEEC
T ss_pred CcCCCEEEEEcCCccHHHHHHHHHHHHcCCEEEEEechHhhhhHHHHHHHHHHHHhcCCceEEEechhhccccCCEEEEE
Confidence 4678999999965 699999999999999999998743 211 12333443 24799999999999764
Q ss_pred cCCC----cc----------ccccccHhHhccCCCceEEEEcc
Q 007512 259 MPLT----PA----------TSKVLNDETFGKMKKGVRIINVA 287 (600)
Q Consensus 259 ~Pl~----~~----------t~~li~~~~l~~mk~gailvNva 287 (600)
.=.. .+ ....++.......+++++|.-|.
T Consensus 82 ~w~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~MH~L 124 (183)
T d1duvg2 82 VWVSMGEAKEKWAERIALLREYQVNSKMMQLTGNPEVKFLHCL 124 (183)
T ss_dssp CSSCTTSCTTHHHHHHHHHGGGCBCHHHHHTTCCTTCEEEECS
T ss_pred ehhhhhhhhhhhhhhhhhhcccccccHHHHhcccCCeEEEccC
Confidence 3211 00 01223334444567888888875
|
| >d2g82a1 c.2.1.3 (A:1-148,A:311-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Thermus aquaticus [TaxId: 271]
Probab=82.56 E-value=0.47 Score=42.05 Aligned_cols=103 Identities=17% Similarity=0.289 Sum_probs=55.3
Q ss_pred CEEEEEecChhHHHHHHHhhcCCCEEEEECCCCChhHH-HHcCCccc--CH-HHHhccCCEEEEecCCCccccccccH--
Q 007512 198 KTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPADRA-RAIGVDLV--SF-DEAIATADFISLHMPLTPATSKVLND-- 271 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~~~~a-~~~g~~~~--~l-~ell~~aDvV~l~~Pl~~~t~~li~~-- 271 (600)
.+|||=|||+||+.+.|.+..-+.+|.+.+...+.+.. .-+.+..+ .+ .++-...|.+++ ......+.+.
T Consensus 1 ikigINGfGRIGR~~~R~l~~~~i~iv~INd~~~~~~~ayLl~yDS~hG~~~~~v~~~~~~l~i----~g~~I~~~~~~~ 76 (168)
T d2g82a1 1 MKVGINGFGRIGRQVFRILHSRGVEVALINDLTDNKTLAHLLKYDSIYHRFPGEVAYDDQYLYV----DGKAIRATAVKD 76 (168)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSCHHHHHHHHHCCTTTCSCSSCEEECSSEEEE----TTEEEEEECCSS
T ss_pred CEEEEECCcHHHHHHHHHHhcCCCEEEEECCCcchhhhhheeecccccCccccccccccceeEe----cceeEEEEecCC
Confidence 37999999999999999887668888876443443322 11111111 11 122234455554 2223333333
Q ss_pred -hHhccCCCceEEEEccCCccccHHHHHHhHhcC
Q 007512 272 -ETFGKMKKGVRIINVARGGVIDEEALVRALDSG 304 (600)
Q Consensus 272 -~~l~~mk~gailvNvarg~ivde~aL~~aL~~g 304 (600)
+.+.+=+-|+-+|=-+.|.--+.+.+..-++.|
T Consensus 77 p~~i~W~~~gvdiViEcTG~f~~~~~~~~hl~~g 110 (168)
T d2g82a1 77 PKEIPWAEAGVGVVIESTGVFTDADKAKAHLEGG 110 (168)
T ss_dssp GGGCCTGGGTEEEEEECSSSCCBHHHHTHHHHTT
T ss_pred hHHCcccccCCceeEeccccccchHHhhhhhccc
Confidence 233332334443333456666777766667765
|
| >d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhfP species: Bacillus subtilis [TaxId: 1423]
Probab=82.18 E-value=0.65 Score=40.86 Aligned_cols=50 Identities=26% Similarity=0.331 Sum_probs=40.3
Q ss_pred ceeccCCEEEEEe-cChhHHHHHHHhhcCCCEEEEECCCC-ChhHHHHcCCc
Q 007512 192 GVSLVGKTLAVLG-FGKVGSEVARRAKGLGMHVIAHDPYA-PADRARAIGVD 241 (600)
Q Consensus 192 g~~l~gktiGIIG-lG~IG~~vA~~l~~~g~~V~~~d~~~-~~~~a~~~g~~ 241 (600)
|....|.+|.|-| .|-+|....+.+|.+|++|++..... ..+.+++.|..
T Consensus 19 g~~~~~~~VLV~gaaGgVG~~avQlAk~~Ga~Viat~~s~~k~~~~~~lGad 70 (167)
T d1tt7a2 19 GLSPEKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAADYLKQLGAS 70 (167)
T ss_dssp TCCGGGCCEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSSTHHHHHHHTCS
T ss_pred cCCCCCCEEEEeCCcchHHHHHHHHHHHcCCceEEEecCHHHHHHHHhhccc
Confidence 3445577889988 69999999999999999999987665 56677777764
|
| >d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative oxidoreductase Rv2002 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=82.14 E-value=0.59 Score=43.67 Aligned_cols=37 Identities=27% Similarity=0.271 Sum_probs=32.8
Q ss_pred eccCCEEEEEec-ChhHHHHHHHhhcCCCEEEEECCCC
Q 007512 194 SLVGKTLAVLGF-GKVGSEVARRAKGLGMHVIAHDPYA 230 (600)
Q Consensus 194 ~l~gktiGIIGl-G~IG~~vA~~l~~~g~~V~~~d~~~ 230 (600)
.|.||++-|-|- +-||+++|++|...|++|+..|++.
T Consensus 3 ~L~gK~alITGas~GIG~aia~~la~~G~~V~~~~r~~ 40 (244)
T d1nffa_ 3 RLTGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILD 40 (244)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred ccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence 588999999987 4599999999999999999998764
|
| >d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative zinc-binding alcohol dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=82.06 E-value=0.32 Score=43.47 Aligned_cols=86 Identities=19% Similarity=0.230 Sum_probs=57.5
Q ss_pred CCEEEEEe-cChhHHHHHHHhhcCCCE-EEEECCCCC--hhHHHHcCCccc------CHHHHhcc-----CCEEEEecCC
Q 007512 197 GKTLAVLG-FGKVGSEVARRAKGLGMH-VIAHDPYAP--ADRARAIGVDLV------SFDEAIAT-----ADFISLHMPL 261 (600)
Q Consensus 197 gktiGIIG-lG~IG~~vA~~l~~~g~~-V~~~d~~~~--~~~a~~~g~~~~------~l~ell~~-----aDvV~l~~Pl 261 (600)
+++|.|.| .|.+|....+.+|.+|++ |++.+.... ...+.+.|...+ ++.+.+++ +|+|+-++-
T Consensus 31 ~etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~e~~~~l~~~~gad~vi~~~~~~~~~~~~~~~~~GvDvv~D~vG- 109 (187)
T d1vj1a2 31 NQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFLTSELGFDAAVNYKTGNVAEQLREACPGGVDVYFDNVG- 109 (187)
T ss_dssp CCEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSHHHHHHHHHHSCCSEEEETTSSCHHHHHHHHCTTCEEEEEESSC-
T ss_pred CCEEEEECCCchhhHHHHHHHHHcCCcceecccchHHHHhhhhhcccceEEeeccchhHHHHHHHHhccCceEEEecCC-
Confidence 47899999 599999999999999985 555554432 223446676421 45554444 888888774
Q ss_pred CccccccccHhHhccCCCceEEEEccC
Q 007512 262 TPATSKVLNDETFGKMKKGVRIINVAR 288 (600)
Q Consensus 262 ~~~t~~li~~~~l~~mk~gailvNvar 288 (600)
.+ .-...+..++++..++.+|.
T Consensus 110 g~-----~~~~~~~~l~~~G~iv~~G~ 131 (187)
T d1vj1a2 110 GD-----ISNTVISQMNENSHIILCGQ 131 (187)
T ss_dssp HH-----HHHHHHTTEEEEEEEEEC--
T ss_pred ch-----hHHHHhhhccccccEEEecc
Confidence 11 12456777888888888863
|
| >d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Levodione reductase species: Corynebacterium aquaticum [TaxId: 144185]
Probab=82.04 E-value=1.2 Score=41.72 Aligned_cols=37 Identities=19% Similarity=0.260 Sum_probs=32.6
Q ss_pred eccCCEEEEEecC-hhHHHHHHHhhcCCCEEEEECCCC
Q 007512 194 SLVGKTLAVLGFG-KVGSEVARRAKGLGMHVIAHDPYA 230 (600)
Q Consensus 194 ~l~gktiGIIGlG-~IG~~vA~~l~~~g~~V~~~d~~~ 230 (600)
.|.||++-|-|-+ -||+++|++|...|++|+..|++.
T Consensus 1 rl~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~ 38 (258)
T d1iy8a_ 1 RFTDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSS 38 (258)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence 3789999999876 599999999999999999998764
|
| >d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Oil seed rape (Brassica napus) [TaxId: 3708]
Probab=81.71 E-value=0.46 Score=45.00 Aligned_cols=39 Identities=21% Similarity=0.278 Sum_probs=34.1
Q ss_pred ceeccCCEEEEEecC---hhHHHHHHHhhcCCCEEEEECCCC
Q 007512 192 GVSLVGKTLAVLGFG---KVGSEVARRAKGLGMHVIAHDPYA 230 (600)
Q Consensus 192 g~~l~gktiGIIGlG---~IG~~vA~~l~~~g~~V~~~d~~~ 230 (600)
...|.||++.|-|.+ -||+.+|++|...|++|+..++..
T Consensus 3 ~~~L~gK~alVTGass~~GIG~aiA~~la~~Ga~Vvi~~~~~ 44 (297)
T d1d7oa_ 3 PIDLRGKRAFIAGIADDNGYGWAVAKSLAAAGAEILVGTWVP 44 (297)
T ss_dssp CCCCTTCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEEEHH
T ss_pred CcCCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCch
Confidence 457999999999986 599999999999999999887643
|
| >d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, middle domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=81.57 E-value=0.73 Score=42.12 Aligned_cols=37 Identities=27% Similarity=0.302 Sum_probs=33.9
Q ss_pred eccCCEEEEEecChhHHHHHHHhhcCCCEEEEECCCC
Q 007512 194 SLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYA 230 (600)
Q Consensus 194 ~l~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~ 230 (600)
.-.+|+|.|||-|..|-..|..|+..|++|..++...
T Consensus 46 ~~~~k~VvIIGaGpAGl~aA~~l~~~G~~v~l~E~~~ 82 (233)
T d1djqa3 46 TKNKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAE 82 (233)
T ss_dssp CSSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred ccCCceEEEEcccHHHHHHHHHHHHhccceeeEeecc
Confidence 4578999999999999999999999999999998754
|
| >d1gado1 c.2.1.3 (O:0-148,O:313-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Escherichia coli [TaxId: 562]
Probab=81.55 E-value=0.77 Score=40.58 Aligned_cols=34 Identities=26% Similarity=0.485 Sum_probs=27.7
Q ss_pred EEEEEecChhHHHHHHHhhcC-CCEEEEECCCCCh
Q 007512 199 TLAVLGFGKVGSEVARRAKGL-GMHVIAHDPYAPA 232 (600)
Q Consensus 199 tiGIIGlG~IG~~vA~~l~~~-g~~V~~~d~~~~~ 232 (600)
+|||=|||+||+.+.|.+... .++|.+.+...+.
T Consensus 3 kigINGFGRIGR~v~R~~~~~~~i~ivaINd~~~~ 37 (166)
T d1gado1 3 KVGINGFGRIGRIVFRAAQKRSDIEIVAINDLLDA 37 (166)
T ss_dssp EEEEECCSHHHHHHHHHHHTCSSEEEEEEECSSCH
T ss_pred EEEEECCcHHHHHHHHHHhhCCCeEEEEEeCCCCH
Confidence 799999999999999998865 6898887544443
|
| >d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Drosophila alcohol dehydrogenase species: Fly (Drosophila lebanonensis) [TaxId: 7225]
Probab=81.54 E-value=1.6 Score=40.68 Aligned_cols=62 Identities=8% Similarity=0.036 Sum_probs=42.0
Q ss_pred eccCCEEEEEecC-hhHHHHHHHhhcCCCEEEEECCCC-ChhHHHHcCCcccCHHHHhccCCEEEEecCCC
Q 007512 194 SLVGKTLAVLGFG-KVGSEVARRAKGLGMHVIAHDPYA-PADRARAIGVDLVSFDEAIATADFISLHMPLT 262 (600)
Q Consensus 194 ~l~gktiGIIGlG-~IG~~vA~~l~~~g~~V~~~d~~~-~~~~a~~~g~~~~~l~ell~~aDvV~l~~Pl~ 262 (600)
.|.||++-|-|-+ -||.++|+.+.+.|++|+..+++. ..+... .+........+.+.++=++
T Consensus 2 ~l~gK~vlITGgs~GIG~~~A~~la~~G~~vii~~r~~~~~~~~~-------~~~~~~~~~~~~~~~~d~~ 65 (254)
T d1sbya1 2 DLTNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENPTALA-------ELKAINPKVNITFHTYDVT 65 (254)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSCCHHHHH-------HHHHHCTTSEEEEEECCTT
T ss_pred CCCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEECCcccHHHHH-------HHHhhCCCCCEEEEEeecC
Confidence 5889999999877 599999999999999877665443 322211 1334445556666555544
|
| >d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=80.87 E-value=0.57 Score=43.52 Aligned_cols=37 Identities=22% Similarity=0.298 Sum_probs=33.2
Q ss_pred eccCCEEEEEecC-hhHHHHHHHhhcCCCEEEEECCCC
Q 007512 194 SLVGKTLAVLGFG-KVGSEVARRAKGLGMHVIAHDPYA 230 (600)
Q Consensus 194 ~l~gktiGIIGlG-~IG~~vA~~l~~~g~~V~~~d~~~ 230 (600)
.|.||++-|-|-+ -||+++|++|...|++|+..|+..
T Consensus 4 sl~gK~~lITGas~GIG~aia~~la~~Ga~V~~~~r~~ 41 (237)
T d1uzma1 4 PFVSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGS 41 (237)
T ss_dssp CCCCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCc
Confidence 5899999999877 499999999999999999998765
|
| >d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose-3', 5'-epimerase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=80.57 E-value=0.76 Score=44.57 Aligned_cols=65 Identities=23% Similarity=0.176 Sum_probs=44.2
Q ss_pred cCCEEEEEe-cChhHHHHHHHhhcCCCEEEEECCCCChhHHHHc-CC-----ccc---CHHHHhccCCEEEEecC
Q 007512 196 VGKTLAVLG-FGKVGSEVARRAKGLGMHVIAHDPYAPADRARAI-GV-----DLV---SFDEAIATADFISLHMP 260 (600)
Q Consensus 196 ~gktiGIIG-lG~IG~~vA~~l~~~g~~V~~~d~~~~~~~a~~~-g~-----~~~---~l~ell~~aDvV~l~~P 260 (600)
.+++|.|.| .|-||+.+++.|..-|.+|+++|........... .. ... .+.+++..+|.|+-+..
T Consensus 14 ~nMKILVTGgsGfIGs~lv~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vih~a~ 88 (363)
T d2c5aa1 14 ENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMTEDMFCDEFHLVDLRVMENCLKVTEGVDHVFNLAA 88 (363)
T ss_dssp SCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCSSSCGGGTCSEEEECCTTSHHHHHHHHTTCSEEEECCC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCCccchhhhcccCcEEEeechhHHHHHHHhhcCCeEeeccc
Confidence 578899986 8999999999999999999999865422111111 11 111 24456778998766553
|
| >d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: 2,4-dienoyl-CoA reductase species: Yeast (Candida tropicalis) [TaxId: 5482]
Probab=80.44 E-value=1.2 Score=39.50 Aligned_cols=86 Identities=16% Similarity=0.129 Sum_probs=57.5
Q ss_pred cCCEEEEE--ecChhHHHHHHHhhcCCCEEEEECCCC-Ch----hHHHHcCCccc-CH------------HHHh----cc
Q 007512 196 VGKTLAVL--GFGKVGSEVARRAKGLGMHVIAHDPYA-PA----DRARAIGVDLV-SF------------DEAI----AT 251 (600)
Q Consensus 196 ~gktiGII--GlG~IG~~vA~~l~~~g~~V~~~d~~~-~~----~~a~~~g~~~~-~l------------~ell----~~ 251 (600)
.|.++.|+ |.|.+|....+.+|.+|++|++.-+.. .. +..+++|...+ +. .++. ..
T Consensus 28 ~g~~vli~~ga~g~vG~~aiqlAk~~Ga~vI~~v~~~~~~~~~~~~~~~lGad~vi~~~~~~~~~~~~~v~~~~~~~g~~ 107 (189)
T d1gu7a2 28 PGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASLKELGATQVITEDQNNSREFGPTIKEWIKQSGGE 107 (189)
T ss_dssp TTTCEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCCTTHHHHHHHHHHHTCSEEEEHHHHHCGGGHHHHHHHHHHHTCC
T ss_pred CCCEEEEEeCCCchHHHHHHHHHhhcCCeEEEEEecccccchHHhhhhhccccEEEeccccchhHHHHHHHHHHhhccCC
Confidence 47889998 679999999999999999999864333 22 23456776432 11 1111 23
Q ss_pred CCEEEEecCCCccccccccHhHhccCCCceEEEEcc
Q 007512 252 ADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVA 287 (600)
Q Consensus 252 aDvV~l~~Pl~~~t~~li~~~~l~~mk~gailvNva 287 (600)
.|+++-|+. .+. -...+..|+++..+|.+|
T Consensus 108 vdvv~D~vg-~~~-----~~~~~~~l~~~G~~v~~G 137 (189)
T d1gu7a2 108 AKLALNCVG-GKS-----STGIARKLNNNGLMLTYG 137 (189)
T ss_dssp EEEEEESSC-HHH-----HHHHHHTSCTTCEEEECC
T ss_pred ceEEEECCC-cch-----hhhhhhhhcCCcEEEEEC
Confidence 788887764 221 245677789999998886
|
| >d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (s)-1-phenylethanol dehydrogenase species: Azoarcus sp. ebn1 [TaxId: 76114]
Probab=80.32 E-value=1.1 Score=41.54 Aligned_cols=38 Identities=21% Similarity=0.228 Sum_probs=33.2
Q ss_pred eccCCEEEEEecC-hhHHHHHHHhhcCCCEEEEECCCCC
Q 007512 194 SLVGKTLAVLGFG-KVGSEVARRAKGLGMHVIAHDPYAP 231 (600)
Q Consensus 194 ~l~gktiGIIGlG-~IG~~vA~~l~~~g~~V~~~d~~~~ 231 (600)
.|.||++-|-|-+ -||+++|++|...|++|+..|+...
T Consensus 2 rL~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~~~~~ 40 (247)
T d2ew8a1 2 RLKDKLAVITGGANGIGRAIAERFAVEGADIAIADLVPA 40 (247)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCC
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCch
Confidence 4789999999875 5999999999999999999987653
|
| >d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-glucose-4,6-dehydratase species: Yersinia pseudotuberculosis [TaxId: 633]
Probab=80.31 E-value=0.66 Score=44.62 Aligned_cols=36 Identities=25% Similarity=0.212 Sum_probs=32.8
Q ss_pred ccCCEEEEEe-cChhHHHHHHHhhcCCCEEEEECCCC
Q 007512 195 LVGKTLAVLG-FGKVGSEVARRAKGLGMHVIAHDPYA 230 (600)
Q Consensus 195 l~gktiGIIG-lG~IG~~vA~~l~~~g~~V~~~d~~~ 230 (600)
.+||+|.|.| .|-||+.+++.|...|.+|+++|+..
T Consensus 6 ~~~KkILVTG~tGfIGs~lv~~Ll~~g~~V~~~~r~~ 42 (356)
T d1rkxa_ 6 WQGKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTA 42 (356)
T ss_dssp HTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred hCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCC
Confidence 4689999998 89999999999999999999998765
|
| >d1hdgo1 c.2.1.3 (O:1-148,O:313-331) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Thermotoga maritima [TaxId: 2336]
Probab=80.29 E-value=1 Score=39.86 Aligned_cols=101 Identities=23% Similarity=0.291 Sum_probs=52.7
Q ss_pred EEEEEecChhHHHHHHHhhc---CCCEEEEECCCCChhHHH-HcCCccc--CHH-HHhccCCEEEEecCCCccccccccH
Q 007512 199 TLAVLGFGKVGSEVARRAKG---LGMHVIAHDPYAPADRAR-AIGVDLV--SFD-EAIATADFISLHMPLTPATSKVLND 271 (600)
Q Consensus 199 tiGIIGlG~IG~~vA~~l~~---~g~~V~~~d~~~~~~~a~-~~g~~~~--~l~-ell~~aDvV~l~~Pl~~~t~~li~~ 271 (600)
+|||=|||+||+.+.|.+.. .+.+|.+.+...+.+... -+.+..+ .++ ++-..-|.+++ ......+++.
T Consensus 2 kIgINGfGRIGR~v~R~~~~~~~~~i~vvaINd~~~~e~~ayLlkyDS~hG~~~~~v~~~~~~l~i----ng~~I~~~~~ 77 (169)
T d1hdgo1 2 RVAINGFGRIGRLVYRIIYERKNPDIEVVAINDLTDTKTLAHLLKYDSVHKKFPGKVEYTENSLIV----DGKEIKVFAE 77 (169)
T ss_dssp EEEEECCSHHHHHHHHHHHHHTCTTCEEEEEECSSCHHHHHHHHHCCTTTCCCSSCEEECSSEEEE----TTEEEEEECC
T ss_pred EEEEECCChHHHHHHHHHHhccCCCEEEEEeccCccHHHHHHHHhccccccccCceEEEECCEEEE----CCEEEEEEeC
Confidence 79999999999999998863 358888874333443321 1111110 011 11122355544 2333344433
Q ss_pred hHhccCC---Cce-EEEEccCCccccHHHHHHhHhcC
Q 007512 272 ETFGKMK---KGV-RIINVARGGVIDEEALVRALDSG 304 (600)
Q Consensus 272 ~~l~~mk---~ga-ilvNvarg~ivde~aL~~aL~~g 304 (600)
.....++ -|+ ++++| .|.--+.+.+...|+.|
T Consensus 78 ~~p~~i~W~~~gvD~ViEc-TG~f~t~~~~~~hl~~G 113 (169)
T d1hdgo1 78 PDPSKLPWKDLGVDFVIES-TGVFRNREKAELHLQAG 113 (169)
T ss_dssp SSGGGSCHHHHTCCEEEEC-SSSCCBHHHHTHHHHTT
T ss_pred CChhhCCccccCCCEEEEe-cceeccccchhhhccCC
Confidence 3333331 122 66776 34444566666667665
|
| >d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sorbitol dehydrogenase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=80.25 E-value=0.6 Score=43.77 Aligned_cols=37 Identities=27% Similarity=0.231 Sum_probs=32.8
Q ss_pred eccCCEEEEEec-ChhHHHHHHHhhcCCCEEEEECCCC
Q 007512 194 SLVGKTLAVLGF-GKVGSEVARRAKGLGMHVIAHDPYA 230 (600)
Q Consensus 194 ~l~gktiGIIGl-G~IG~~vA~~l~~~g~~V~~~d~~~ 230 (600)
.|.||++-|-|- +-||+++|+.|...|++|+..|++.
T Consensus 2 ~L~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~ 39 (256)
T d1k2wa_ 2 RLDGKTALITGSARGIGRAFAEAYVREGARVAIADINL 39 (256)
T ss_dssp TTTTEEEEEETCSSHHHHHHHHHHHHTTEEEEEEESCH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence 478999999976 6799999999999999999998763
|
| >d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]
Probab=80.14 E-value=0.61 Score=43.39 Aligned_cols=37 Identities=24% Similarity=0.297 Sum_probs=32.1
Q ss_pred eccCCEEEEEec-Ch--hHHHHHHHhhcCCCEEEEECCCC
Q 007512 194 SLVGKTLAVLGF-GK--VGSEVARRAKGLGMHVIAHDPYA 230 (600)
Q Consensus 194 ~l~gktiGIIGl-G~--IG~~vA~~l~~~g~~V~~~d~~~ 230 (600)
-|.||++.|.|. |. ||+++|++|...|++|+..+++.
T Consensus 3 ~l~gK~~lItGaag~~GIG~aiA~~la~~Ga~Vil~~~~~ 42 (268)
T d2h7ma1 3 LLDGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDR 42 (268)
T ss_dssp TTTTCEEEECCCSSTTCHHHHHHHHHHHTTCEEEEEECSC
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHcCCEEEEEeCCh
Confidence 378999999995 54 99999999999999999887654
|