Citrus Sinensis ID: 007517
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 600 | 2.2.26 [Sep-21-2011] | |||||||
| Q9FXB9 | 704 | Pentatricopeptide repeat- | yes | no | 0.965 | 0.822 | 0.718 | 0.0 | |
| Q56XI1 | 705 | Pentatricopeptide repeat- | no | no | 1.0 | 0.851 | 0.683 | 0.0 | |
| Q9SY02 | 781 | Pentatricopeptide repeat- | no | no | 0.998 | 0.766 | 0.477 | 0.0 | |
| Q9M4P3 | 656 | Pentatricopeptide repeat- | no | no | 0.971 | 0.888 | 0.467 | 1e-151 | |
| Q9FHF9 | 697 | Pentatricopeptide repeat- | no | no | 0.995 | 0.856 | 0.379 | 1e-129 | |
| Q9SUH6 | 792 | Pentatricopeptide repeat- | no | no | 0.998 | 0.756 | 0.371 | 1e-126 | |
| Q9LNU6 | 760 | Pentatricopeptide repeat- | no | no | 0.928 | 0.732 | 0.371 | 1e-125 | |
| O82380 | 738 | Pentatricopeptide repeat- | no | no | 0.945 | 0.768 | 0.392 | 1e-125 | |
| Q9SHZ8 | 786 | Pentatricopeptide repeat- | no | no | 0.991 | 0.756 | 0.394 | 1e-124 | |
| Q9CAA8 | 743 | Putative pentatricopeptid | no | no | 0.996 | 0.804 | 0.341 | 1e-122 |
| >sp|Q9FXB9|PPR84_ARATH Pentatricopeptide repeat-containing protein At1g56690, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H69 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 922 bits (2384), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 431/600 (71%), Positives = 508/600 (84%)
Query: 1 MPERNVVSWTAMVRGYVEEGMITEAGTLFWQMPEKNVVSWTVMLGGFIRDSRIDDARRLF 60
MPERNVVSWTAMV+GY++EGM+ EA +LFW+MPE+N VSWTVM GG I D RID AR+L+
Sbjct: 105 MPERNVVSWTAMVKGYMQEGMVGEAESLFWRMPERNEVSWTVMFGGLIDDGRIDKARKLY 164
Query: 61 DMMPEKDVVAQTNMVLGYCQDGRVDEGREIFDEMPKKNVISWTTMISGYVNNNRIDVARK 120
DMMP KDVVA TNM+ G C++GRVDE R IFDEM ++NV++WTTMI+GY NNR+DVARK
Sbjct: 165 DMMPVKDVVASTNMIGGLCREGRVDEARLIFDEMRERNVVTWTTMITGYRQNNRVDVARK 224
Query: 121 LFEVMPEKNEVSWTAMLMGYTQCGRIQDAWELFKAMPMKSVVASNSMILGLGQNGEVQKA 180
LFEVMPEK EVSWT+ML+GYT GRI+DA E F+ MPMK V+A N+MI+G G+ GE+ KA
Sbjct: 225 LFEVMPEKTEVSWTSMLLGYTLSGRIEDAEEFFEVMPMKPVIACNAMIVGFGEVGEISKA 284
Query: 181 RVVFDQMREKDDATWSGMIKVYERKGYELEVIDLFTLMQKEGVRVNFPSLISVLSVCASL 240
R VFD M ++D+ATW GMIK YERKG+ELE +DLF MQK+GVR +FPSLIS+LSVCA+L
Sbjct: 285 RRVFDLMEDRDNATWRGMIKAYERKGFELEALDLFAQMQKQGVRPSFPSLISILSVCATL 344
Query: 241 ASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFASKDIVMWNSII 300
ASL +GRQVHA LVRCQFD DVYVASVL+TMY+KCGELVK KL+FD F+SKDI+MWNSII
Sbjct: 345 ASLQYGRQVHAHLVRCQFDDDVYVASVLMTMYVKCGELVKAKLVFDRFSSKDIIMWNSII 404
Query: 301 SGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLV 360
SGYA +GLGE++LK+FHEM SSG MP+ VTL+ +L+ACSY GK++EG EIFESM+SK+ V
Sbjct: 405 SGYASHGLGEEALKIFHEMPSSGTMPNKVTLIAILTACSYAGKLEEGLEIFESMESKFCV 464
Query: 361 EPKTEHYACMVDLLGRAGQVEDAMKLIEAMPFEPDAIIWGSLLGACRTHMKLDLAEVAAK 420
P EHY+C VD+LGRAGQV+ AM+LIE+M +PDA +WG+LLGAC+TH +LDLAEVAAK
Sbjct: 465 TPTVEHYSCTVDMLGRAGQVDKAMELIESMTIKPDATVWGALLGACKTHSRLDLAEVAAK 524
Query: 421 KLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMRKRNVIKPPGCSWIEVEKKVHMFT 480
KL + EP NAG Y+LLS+I AS+ ++ DVA +RKNMR NV K PGCSWIEV KKVHMFT
Sbjct: 525 KLFENEPDNAGTYVLLSSINASRSKWGDVAVVRKNMRTNNVSKFPGCSWIEVGKKVHMFT 584
Query: 481 GRDCVSHPEHPMIMRMLEKIGGLLREAGYCPDSSFVLHDVDEEEKVHSLRYHSEKLAVAY 540
+HPE MI+ MLEK GLLREAGY PD S VLHDVDEEEKV SL HSE+LAVAY
Sbjct: 585 RGGIKNHPEQAMILMMLEKTDGLLREAGYSPDCSHVLHDVDEEEKVDSLSRHSERLAVAY 644
Query: 541 GLVKLPEGVPIRVMKNLRVCGDCHSAIKLISKVMGREIILRDANRFHHFKDGLCSCRDYW 600
GL+KLPEGVPIRVMKNLRVCGDCH+AIKLISKV REIILRDANRFHHF +G CSCRDYW
Sbjct: 645 GLLKLPEGVPIRVMKNLRVCGDCHAAIKLISKVTEREIILRDANRFHHFNNGECSCRDYW 704
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q56XI1|PPR25_ARATH Pentatricopeptide repeat-containing protein At1g09410 OS=Arabidopsis thaliana GN=PCMP-H18 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 882 bits (2278), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 411/601 (68%), Positives = 506/601 (84%), Gaps = 1/601 (0%)
Query: 1 MPERNVVSWTAMVRGYVEEGMITEAGTLFWQMPEKNVVSWTVMLGGFIRDSRIDDARRLF 60
MPERNVVSWTA+V+GYV G + A +LFW+MPEKN VSWTVML GF++D RIDDA +L+
Sbjct: 105 MPERNVVSWTALVKGYVHNGKVDVAESLFWKMPEKNKVSWTVMLIGFLQDGRIDDACKLY 164
Query: 61 DMMPEKDVVAQTNMVLGYCQDGRVDEGREIFDEMPKKNVISWTTMISGYVNNNRIDVARK 120
+M+P+KD +A+T+M+ G C++GRVDE REIFDEM +++VI+WTTM++GY NNR+D ARK
Sbjct: 165 EMIPDKDNIARTSMIHGLCKEGRVDEAREIFDEMSERSVITWTTMVTGYGQNNRVDDARK 224
Query: 121 LFEVMPEKNEVSWTAMLMGYTQCGRIQDAWELFKAMPMKSVVASNSMILGLGQNGEVQKA 180
+F+VMPEK EVSWT+MLMGY Q GRI+DA ELF+ MP+K V+A N+MI GLGQ GE+ KA
Sbjct: 225 IFDVMPEKTEVSWTSMLMGYVQNGRIEDAEELFEVMPVKPVIACNAMISGLGQKGEIAKA 284
Query: 181 RVVFDQMREKDDATWSGMIKVYERKGYELEVIDLFTLMQKEGVRVNFPSLISVLSVCASL 240
R VFD M+E++DA+W +IK++ER G+ELE +DLF LMQK+GVR FP+LIS+LSVCASL
Sbjct: 285 RRVFDSMKERNDASWQTVIKIHERNGFELEALDLFILMQKQGVRPTFPTLISILSVCASL 344
Query: 241 ASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFASKDIVMWNSII 300
ASL HG+QVHAQLVRCQFDVDVYVASVL+TMYIKCGELVK KLIFD F SKDI+MWNSII
Sbjct: 345 ASLHHGKQVHAQLVRCQFDVDVYVASVLMTMYIKCGELVKSKLIFDRFPSKDIIMWNSII 404
Query: 301 SGYAQYGLGEKSLKVFHEM-FSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYL 359
SGYA +GLGE++LKVF EM S P++VT V LSACSY G V+EG +I+ESM+S +
Sbjct: 405 SGYASHGLGEEALKVFCEMPLSGSTKPNEVTFVATLSACSYAGMVEEGLKIYESMESVFG 464
Query: 360 VEPKTEHYACMVDLLGRAGQVEDAMKLIEAMPFEPDAIIWGSLLGACRTHMKLDLAEVAA 419
V+P T HYACMVD+LGRAG+ +AM++I++M EPDA +WGSLLGACRTH +LD+AE A
Sbjct: 465 VKPITAHYACMVDMLGRAGRFNEAMEMIDSMTVEPDAAVWGSLLGACRTHSQLDVAEFCA 524
Query: 420 KKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMRKRNVIKPPGCSWIEVEKKVHMF 479
KKL+++EP+N+G YILLSN+YASQGR+ DVAELRK M+ R V K PGCSW EVE KVH F
Sbjct: 525 KKLIEIEPENSGTYILLSNMYASQGRWADVAELRKLMKTRLVRKSPGCSWTEVENKVHAF 584
Query: 480 TGRDCVSHPEHPMIMRMLEKIGGLLREAGYCPDSSFVLHDVDEEEKVHSLRYHSEKLAVA 539
T SHPE I+++L+++ GLLREAGY PD S+ LHDVDEEEKV+SL+YHSE+LAVA
Sbjct: 585 TRGGINSHPEQESILKILDELDGLLREAGYNPDCSYALHDVDEEEKVNSLKYHSERLAVA 644
Query: 540 YGLVKLPEGVPIRVMKNLRVCGDCHSAIKLISKVMGREIILRDANRFHHFKDGLCSCRDY 599
Y L+KL EG+PIRVMKNLRVC DCH+AIK+ISKV REIILRDANRFHHF++G CSC+DY
Sbjct: 645 YALLKLSEGIPIRVMKNLRVCSDCHTAIKIISKVKEREIILRDANRFHHFRNGECSCKDY 704
Query: 600 W 600
W
Sbjct: 705 W 705
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SY02|PP301_ARATH Pentatricopeptide repeat-containing protein At4g02750 OS=Arabidopsis thaliana GN=PCMP-H24 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 640 bits (1651), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 301/631 (47%), Positives = 422/631 (66%), Gaps = 32/631 (5%)
Query: 1 MPERNVVSWTAMVRGYVEEGMITEAGTLFWQMPEKN------------------------ 36
MPER+V SW M+ GY + G + +A ++F +MPEKN
Sbjct: 152 MPERDVCSWNTMLSGYAQNGCVDDARSVFDRMPEKNDVSWNALLSAYVQNSKMEEACMLF 211
Query: 37 -------VVSWTVMLGGFIRDSRIDDARRLFDMMPEKDVVAQTNMVLGYCQDGRVDEGRE 89
+VSW +LGGF++ +I +AR+ FD M +DVV+ ++ GY Q G++DE R+
Sbjct: 212 KSRENWALVSWNCLLGGFVKKKKIVEARQFFDSMNVRDVVSWNTIITGYAQSGKIDEARQ 271
Query: 90 IFDEMPKKNVISWTTMISGYVNNNRIDVARKLFEVMPEKNEVSWTAMLMGYTQCGRIQDA 149
+FDE P ++V +WT M+SGY+ N ++ AR+LF+ MPE+NEVSW AML GY Q R++ A
Sbjct: 272 LFDESPVQDVFTWTAMVSGYIQNRMVEEARELFDKMPERNEVSWNAMLAGYVQGERMEMA 331
Query: 150 WELFKAMPMKSVVASNSMILGLGQNGEVQKARVVFDQMREKDDATWSGMIKVYERKGYEL 209
ELF MP ++V N+MI G Q G++ +A+ +FD+M ++D +W+ MI Y + G+
Sbjct: 332 KELFDVMPCRNVSTWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSF 391
Query: 210 EVIDLFTLMQKEGVRVNFPSLISVLSVCASLASLDHGRQVHAQLVRCQFDVDVYVASVLI 269
E + LF M++EG R+N S S LS CA + +L+ G+Q+H +LV+ ++ +V + L+
Sbjct: 392 EALRLFVQMEREGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALL 451
Query: 270 TMYIKCGELVKGKLIFDNFASKDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDV 329
MY KCG + + +F A KDIV WN++I+GY+++G GE +L+ F M G+ PDD
Sbjct: 452 LMYCKCGSIEEANDLFKEMAGKDIVSWNTMIAGYSRHGFGEVALRFFESMKREGLKPDDA 511
Query: 330 TLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEA 389
T+V VLSACS+TG V +GR+ F +M Y V P ++HYACMVDLLGRAG +EDA L++
Sbjct: 512 TMVAVLSACSHTGLVDKGRQYFYTMTQDYGVMPNSQHYACMVDLLGRAGLLEDAHNLMKN 571
Query: 390 MPFEPDAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDV 449
MPFEPDA IWG+LLGA R H +LAE AA K+ +EP+N+G Y+LLSN+YAS GR+ DV
Sbjct: 572 MPFEPDAAIWGTLLGASRVHGNTELAETAADKIFAMEPENSGMYVLLSNLYASSGRWGDV 631
Query: 450 AELRKNMRKRNVIKPPGCSWIEVEKKVHMFTGRDCVSHPEHPMIMRMLEKIGGLLREAGY 509
+LR MR + V K PG SWIE++ K H F+ D HPE I LE++ +++AGY
Sbjct: 632 GKLRVRMRDKGVKKVPGYSWIEIQNKTHTFSVGDEF-HPEKDEIFAFLEELDLRMKKAGY 690
Query: 510 CPDSSFVLHDVDEEEKVHSLRYHSEKLAVAYGLVKLPEGVPIRVMKNLRVCGDCHSAIKL 569
+S VLHDV+EEEK +RYHSE+LAVAYG++++ G PIRV+KNLRVC DCH+AIK
Sbjct: 691 VSKTSVVLHDVEEEEKERMVRYHSERLAVAYGIMRVSSGRPIRVIKNLRVCEDCHNAIKY 750
Query: 570 ISKVMGREIILRDANRFHHFKDGLCSCRDYW 600
++++ GR IILRD NRFHHFKDG CSC DYW
Sbjct: 751 MARITGRLIILRDNNRFHHFKDGSCSCGDYW 781
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9M4P3|PP316_ARATH Pentatricopeptide repeat-containing protein At4g16835, mitochondrial OS=Arabidopsis thaliana GN=DYW10 PE=2 SV=3 | Back alignment and function description |
|---|
Score = 536 bits (1382), Expect = e-151, Method: Compositional matrix adjust.
Identities = 274/586 (46%), Positives = 377/586 (64%), Gaps = 3/586 (0%)
Query: 17 VEEGMITEAGTLFWQMPEKNVVSWTVMLGGFIRD-SRIDDARRLFDMMPEKDVVAQTNMV 75
V G I A +F M KN ++W +L G +D SR+ +A +LFD +PE D + M+
Sbjct: 72 VRSGDIDGALRVFHGMRAKNTITWNSLLIGISKDPSRMMEAHQLFDEIPEPDTFSYNIML 131
Query: 76 LGYCQDGRVDEGREIFDEMPKKNVISWTTMISGYVNNNRIDVARKLFEVMPEKNEVSWTA 135
Y ++ ++ + FD MP K+ SW TMI+GY ++ AR+LF M EKNEVSW A
Sbjct: 132 SCYVRNVNFEKAQSFFDRMPFKDAASWNTMITGYARRGEMEKARELFYSMMEKNEVSWNA 191
Query: 136 MLMGYTQCGRIQDAWELFKAMPMKSVVASNSMILGLGQNGEVQKARVVFDQMR-EKDDAT 194
M+ GY +CG ++ A FK P++ VVA +MI G + +V+ A +F M K+ T
Sbjct: 192 MISGYIECGDLEKASHFFKVAPVRGVVAWTAMITGYMKAKKVELAEAMFKDMTVNKNLVT 251
Query: 195 WSGMIKVYERKGYELEVIDLFTLMQKEGVRVNFPSLISVLSVCASLASLDHGRQVHAQLV 254
W+ MI Y + + LF M +EG+R N L S L C+ L++L GRQ+H +
Sbjct: 252 WNAMISGYVENSRPEDGLKLFRAMLEEGIRPNSSGLSSALLGCSELSALQLGRQIHQIVS 311
Query: 255 RCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFASKDIVMWNSIISGYAQYGLGEKSLK 314
+ DV + LI+MY KCGEL +F+ KD+V WN++ISGYAQ+G +K+L
Sbjct: 312 KSTLCNDVTALTSLISMYCKCGELGDAWKLFEVMKKKDVVAWNAMISGYAQHGNADKALC 371
Query: 315 VFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLL 374
+F EM + + PD +T V VL AC++ G V G FESM Y VEP+ +HY CMVDLL
Sbjct: 372 LFREMIDNKIRPDWITFVAVLLACNHAGLVNIGMAYFESMVRDYKVEPQPDHYTCMVDLL 431
Query: 375 GRAGQVEDAMKLIEAMPFEPDAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYI 434
GRAG++E+A+KLI +MPF P A ++G+LLGACR H ++LAE AA+KLLQL +NA Y+
Sbjct: 432 GRAGKLEEALKLIRSMPFRPHAAVFGTLLGACRVHKNVELAEFAAEKLLQLNSQNAAGYV 491
Query: 435 LLSNIYASQGRFHDVAELRKNMRKRNVIKPPGCSWIEVEKKVHMFTGRDCVSHPEHPMIM 494
L+NIYAS+ R+ DVA +RK M++ NV+K PG SWIE+ KVH F D + HPE I
Sbjct: 492 QLANIYASKNRWEDVARVRKRMKESNVVKVPGYSWIEIRNKVHHFRSSDRI-HPELDSIH 550
Query: 495 RMLEKIGGLLREAGYCPDSSFVLHDVDEEEKVHSLRYHSEKLAVAYGLVKLPEGVPIRVM 554
+ L+++ ++ AGY P+ F LH+V+EE+K L +HSEKLAVA+G +KLP+G I+V
Sbjct: 551 KKLKELEKKMKLAGYKPELEFALHNVEEEQKEKLLLWHSEKLAVAFGCIKLPQGSQIQVF 610
Query: 555 KNLRVCGDCHSAIKLISKVMGREIILRDANRFHHFKDGLCSCRDYW 600
KNLR+CGDCH AIK IS++ REII+RD RFHHFKDG CSC DYW
Sbjct: 611 KNLRICGDCHKAIKFISEIEKREIIVRDTTRFHHFKDGSCSCGDYW 656
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FHF9|PP419_ARATH Pentatricopeptide repeat-containing protein At5g46460, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H49 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 463 bits (1191), Expect = e-129, Method: Compositional matrix adjust.
Identities = 243/640 (37%), Positives = 363/640 (56%), Gaps = 43/640 (6%)
Query: 1 MPERNVVSWTAMVRGYVEEGMITEAGTLFWQMPEKNVVSWTVMLGGFIRDSRIDDARRLF 60
+P +V +T M+ GY + +A LF +MP ++VVSW M+ G + ++ A +LF
Sbjct: 61 VPSPHVSLYTKMITGYTRSNRLVDALNLFDEMPVRDVVSWNSMISGCVECGDMNTAVKLF 120
Query: 61 DMMPEKDVVAQTNMVLGYCQDGRVDEGREIFDEMPKKNVISWTTMISGYVNNNRIDVARK 120
D MPE+ VV+ T MV G + G+VD+ +F +MP K+ +W +M+ GY+ ++D A K
Sbjct: 121 DEMPERSVVSWTAMVNGCFRSGKVDQAERLFYQMPVKDTAAWNSMVHGYLQFGKVDDALK 180
Query: 121 LFEVMPEKNEVSWTAMLMGYTQCGRIQDAWELFKAM----------PMKSVVA------- 163
LF+ MP KN +SWT M+ G Q R +A +LFK M P V+
Sbjct: 181 LFKQMPGKNVISWTTMICGLDQNERSGEALDLFKNMLRCCIKSTSRPFTCVITACANAPA 240
Query: 164 ----------------------SNSMILGLGQNGEVQKARVVFDQMREKDDATWSGMIKV 201
S S+I + +R VFD+ + A W+ ++
Sbjct: 241 FHMGIQVHGLIIKLGFLYEEYVSASLITFYANCKRIGDSRKVFDEKVHEQVAVWTALLSG 300
Query: 202 YERKGYELEVIDLFTLMQKEGVRVNFPSLISVLSVCASLASLDHGRQVHAQLVRCQFDVD 261
Y + + +F+ M + + N + S L+ C++L +LD G+++H V+ + D
Sbjct: 301 YSLNKKHEDALSIFSGMLRNSILPNQSTFASGLNSCSALGTLDWGKEMHGVAVKLGLETD 360
Query: 262 VYVASVLITMYIKCGELVKGKLIFDNFASKDIVMWNSIISGYAQYGLGEKSLKVFHEMFS 321
+V + L+ MY G + +F K IV WNSII G AQ+G G+ + +F +M
Sbjct: 361 AFVGNSLVVMYSDSGNVNDAVSVFIKIFKKSIVSWNSIIVGCAQHGRGKWAFVIFGQMIR 420
Query: 322 SGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKY-LVEPKTEHYACMVDLLGRAGQV 380
PD++T G+LSACS+ G +++GR++F M S ++ K +HY CMVD+LGR G++
Sbjct: 421 LNKEPDEITFTGLLSACSHCGFLEKGRKLFYYMSSGINHIDRKIQHYTCMVDILGRCGKL 480
Query: 381 EDAMKLIEAMPFEPDAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIY 440
++A +LIE M +P+ ++W +LL ACR H +D E AA + L+ K++ Y+LLSNIY
Sbjct: 481 KEAEELIERMVVKPNEMVWLALLSACRMHSDVDRGEKAAAAIFNLDSKSSAAYVLLSNIY 540
Query: 441 ASQGRFHDVAELRKNMRKRNVIKPPGCSWIEVEKKVHMFTGRDCVSHPEHPMIMRMLEKI 500
AS GR+ +V++LR M+K ++K PG SW+ + K H F D P I LE +
Sbjct: 541 ASAGRWSNVSKLRVKMKKNGIMKKPGSSWVVIRGKKHEFFSGD---QPHCSRIYEKLEFL 597
Query: 501 GGLLREAGYCPDSSFVLHDVDEEEKVHSLRYHSEKLAVAYGLVKLPEGVPIRVMKNLRVC 560
L+E GY PD LHDV++E+K L YHSE+LA+A+GL+ EG + VMKNLRVC
Sbjct: 598 REKLKELGYAPDYRSALHDVEDEQKEEMLWYHSERLAIAFGLINTVEGSAVTVMKNLRVC 657
Query: 561 GDCHSAIKLISKVMGREIILRDANRFHHFKDGLCSCRDYW 600
DCH+ IKLIS V+GREI+LRD RFHHFK+G CSC DYW
Sbjct: 658 EDCHTVIKLISGVVGREIVLRDPIRFHHFKNGTCSCGDYW 697
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SUH6|PP341_ARATH Pentatricopeptide repeat-containing protein At4g30700 OS=Arabidopsis thaliana GN=DYW9 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 451 bits (1161), Expect = e-126, Method: Compositional matrix adjust.
Identities = 228/614 (37%), Positives = 360/614 (58%), Gaps = 15/614 (2%)
Query: 1 MPERNVVSWTAMVRGYVEEGMITEAGTLFWQMPEKNV--VSWTVMLGGFIRDSRIDDAR- 57
MPE++ + W M+ GY + M E+ +F + ++ + T +L + + + R
Sbjct: 180 MPEKDTILWNTMISGYRKNEMYVESIQVFRDLINESCTRLDTTTLLDILPAVAELQELRL 239
Query: 58 --RLFDMMPEKDVVAQTNMVLG----YCQDGRVDEGREIFDEMPKKNVISWTTMISGYVN 111
++ + + + ++ G Y + G++ G +F E K +++++ MI GY +
Sbjct: 240 GMQIHSLATKTGCYSHDYVLTGFISLYSKCGKIKMGSALFREFRKPDIVAYNAMIHGYTS 299
Query: 112 NNRIDVARKLF-EVMPEKNEVSWTAMLMGYTQCGRIQDAWEL----FKAMPMKSVVASNS 166
N +++ LF E+M + + ++ G + + + K+ + S +
Sbjct: 300 NGETELSLSLFKELMLSGARLRSSTLVSLVPVSGHLMLIYAIHGYCLKSNFLSHASVSTA 359
Query: 167 MILGLGQNGEVQKARVVFDQMREKDDATWSGMIKVYERKGYELEVIDLFTLMQKEGVRVN 226
+ + E++ AR +FD+ EK +W+ MI Y + G + I LF MQK N
Sbjct: 360 LTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQKSEFSPN 419
Query: 227 FPSLISVLSVCASLASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFD 286
++ +LS CA L +L G+ VH + F+ +YV++ LI MY KCG + + + +FD
Sbjct: 420 PVTITCILSACAQLGALSLGKWVHDLVRSTDFESSIYVSTALIGMYAKCGSIAEARRLFD 479
Query: 287 NFASKDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKE 346
K+ V WN++ISGY +G G+++L +F+EM +SG+ P VT + VL ACS+ G VKE
Sbjct: 480 LMTKKNEVTWNTMISGYGLHGQGQEALNIFYEMLNSGITPTPVTFLCVLYACSHAGLVKE 539
Query: 347 GREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAMPFEPDAIIWGSLLGAC 406
G EIF SM +Y EP +HYACMVD+LGRAG ++ A++ IEAM EP + +W +LLGAC
Sbjct: 540 GDEIFNSMIHRYGFEPSVKHYACMVDILGRAGHLQRALQFIEAMSIEPGSSVWETLLGAC 599
Query: 407 RTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMRKRNVIKPPG 466
R H +LA ++KL +L+P N G ++LLSNI+++ + A +R+ +KR + K PG
Sbjct: 600 RIHKDTNLARTVSEKLFELDPDNVGYHVLLSNIHSADRNYPQAATVRQTAKKRKLAKAPG 659
Query: 467 CSWIEVEKKVHMFTGRDCVSHPEHPMIMRMLEKIGGLLREAGYCPDSSFVLHDVDEEEKV 526
+ IE+ + H+FT D SHP+ I LEK+ G +REAGY P++ LHDV+EEE+
Sbjct: 660 YTLIEIGETPHVFTSGD-QSHPQVKEIYEKLEKLEGKMREAGYQPETELALHDVEEEERE 718
Query: 527 HSLRYHSEKLAVAYGLVKLPEGVPIRVMKNLRVCGDCHSAIKLISKVMGREIILRDANRF 586
++ HSE+LA+A+GL+ G IR++KNLRVC DCH+ KLISK+ R I++RDANRF
Sbjct: 719 LMVKVHSERLAIAFGLIATEPGTEIRIIKNLRVCLDCHTVTKLISKITERVIVVRDANRF 778
Query: 587 HHFKDGLCSCRDYW 600
HHFKDG+CSC DYW
Sbjct: 779 HHFKDGVCSCGDYW 792
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LNU6|PPR53_ARATH Pentatricopeptide repeat-containing protein At1g20230 OS=Arabidopsis thaliana GN=PCMP-H21 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 448 bits (1152), Expect = e-125, Method: Compositional matrix adjust.
Identities = 225/605 (37%), Positives = 356/605 (58%), Gaps = 48/605 (7%)
Query: 43 MLGGFIRDSRIDDARRLFDMMPEKDVVAQTNMVLGYCQDGRVDEGREIFDEMP----KKN 98
M ++R R+ DAR++FD M +KDVV + ++ Y + G ++E I EM + N
Sbjct: 157 MFHMYMRCGRMGDARKVFDRMSDKDVVTCSALLCAYARKGCLEEVVRILSEMESSGIEAN 216
Query: 99 VISWTTMISGYVNNNRIDVARKLFE----------------VMPE--------------- 127
++SW ++SG+ + A +F+ V+P
Sbjct: 217 IVSWNGILSGFNRSGYHKEAVVMFQKIHHLGFCPDQVTVSSVLPSVGDSEMLNMGRLIHG 276
Query: 128 --------KNEVSWTAMLMGYTQCGRIQDAWELFKAMPMKSVVASNSMILGLGQNGEVQK 179
K++ +AM+ Y + G + LF M N+ I GL +NG V K
Sbjct: 277 YVIKQGLLKDKCVISAMIDMYGKSGHVYGIISLFNQFEMMEAGVCNAYITGLSRNGLVDK 336
Query: 180 ARVVFDQMREK----DDATWSGMIKVYERKGYELEVIDLFTLMQKEGVRVNFPSLISVLS 235
A +F+ +E+ + +W+ +I + G ++E ++LF MQ GV+ N ++ S+L
Sbjct: 337 ALEMFELFKEQTMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNHVTIPSMLP 396
Query: 236 VCASLASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFASKDIVM 295
C ++A+L HGR H VR +V+V S LI MY KCG + +++F+ +K++V
Sbjct: 397 ACGNIAALGHGRSTHGFAVRVHLLDNVHVGSALIDMYAKCGRINLSQIVFNMMPTKNLVC 456
Query: 296 WNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMK 355
WNS+++G++ +G ++ + +F + + + PD ++ +LSAC G EG + F+ M
Sbjct: 457 WNSLMNGFSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEGWKYFKMMS 516
Query: 356 SKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAMPFEPDAIIWGSLLGACRTHMKLDLA 415
+Y ++P+ EHY+CMV+LLGRAG++++A LI+ MPFEPD+ +WG+LL +CR +DLA
Sbjct: 517 EEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEMPFEPDSCVWGALLNSCRLQNNVDLA 576
Query: 416 EVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMRKRNVIKPPGCSWIEVEKK 475
E+AA+KL LEP+N G Y+LLSNIYA++G + +V +R M + K PGCSWI+V+ +
Sbjct: 577 EIAAEKLFHLEPENPGTYVLLSNIYAAKGMWTEVDSIRNKMESLGLKKNPGCSWIQVKNR 636
Query: 476 VHMFTGRDCVSHPEHPMIMRMLEKIGGLLREAGYCPDSSFVLHDVDEEEKVHSLRYHSEK 535
V+ D SHP+ I +++I +R++G+ P+ F LHDV+E+E+ L HSEK
Sbjct: 637 VYTLLAGD-KSHPQIDQITEKMDEISKEMRKSGHRPNLDFALHDVEEQEQEQMLWGHSEK 695
Query: 536 LAVAYGLVKLPEGVPIRVMKNLRVCGDCHSAIKLISKVMGREIILRDANRFHHFKDGLCS 595
LAV +GL+ P+G P++V+KNLR+CGDCH+ IK IS GREI +RD NRFHHFKDG+CS
Sbjct: 696 LAVVFGLLNTPDGTPLQVIKNLRICGDCHAVIKFISSYAGREIFIRDTNRFHHFKDGICS 755
Query: 596 CRDYW 600
C D+W
Sbjct: 756 CGDFW 760
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|O82380|PP175_ARATH Pentatricopeptide repeat-containing protein At2g29760, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H33 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 447 bits (1151), Expect = e-125, Method: Compositional matrix adjust.
Identities = 233/593 (39%), Positives = 352/593 (59%), Gaps = 26/593 (4%)
Query: 10 TAMVRGYVEEGMITEAGTLFWQMPEKNVVSWTVMLGGFIRDSRIDDARRLFDMMPEKDVV 69
+++ Y G + A +F + EK+VVSW M+ GF++ D A LF M +DV
Sbjct: 170 NSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDKALELFKKMESEDVK 229
Query: 70 AQTNMVLGYCQDGRVDEGREIFDEMPKKNVISWTTMISGYVNNNRIDVARKLFEVMPEKN 129
A ++G + K + + + Y+ NR++V L
Sbjct: 230 ASHVTMVG------------VLSACAKIRNLEFGRQVCSYIEENRVNVNLTLA------- 270
Query: 130 EVSWTAMLMGYTQCGRIQDAWELFKAMPMKSVVASNSMILGLGQNGEVQKARVVFDQMRE 189
AML YT+CG I+DA LF AM K V +M+ G + + + AR V + M +
Sbjct: 271 ----NAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNSMPQ 326
Query: 190 KDDATWSGMIKVYERKGYELEVIDLFTLMQ-KEGVRVNFPSLISVLSVCASLASLDHGRQ 248
KD W+ +I YE+ G E + +F +Q ++ +++N +L+S LS CA + +L+ GR
Sbjct: 327 KDIVAWNALISAYEQNGKPNEALIVFHELQLQKNMKLNQITLVSTLSACAQVGALELGRW 386
Query: 249 VHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFASKDIVMWNSIISGYAQYGL 308
+H+ + + ++ +V S LI MY KCG+L K + +F++ +D+ +W+++I G A +G
Sbjct: 387 IHSYIKKHGIRMNFHVTSALIHMYSKCGDLEKSREVFNSVEKRDVFVWSAMIGGLAMHGC 446
Query: 309 GEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYA 368
G +++ +F++M + V P+ VT V ACS+TG V E +F M+S Y + P+ +HYA
Sbjct: 447 GNEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAESLFHQMESNYGIVPEEKHYA 506
Query: 369 CMVDLLGRAGQVEDAMKLIEAMPFEPDAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPK 428
C+VD+LGR+G +E A+K IEAMP P +WG+LLGAC+ H L+LAE+A +LL+LEP+
Sbjct: 507 CIVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGALLGACKIHANLNLAEMACTRLLELEPR 566
Query: 429 NAGPYILLSNIYASQGRFHDVAELRKNMRKRNVIKPPGCSWIEVEKKVHMFTGRDCVSHP 488
N G ++LLSNIYA G++ +V+ELRK+MR + K PGCS IE++ +H F D +HP
Sbjct: 567 NDGAHVLLSNIYAKLGKWENVSELRKHMRVTGLKKEPGCSSIEIDGMIHEFLSGD-NAHP 625
Query: 489 EHPMIMRMLEKIGGLLREAGYCPDSSFVLHDVDEEE-KVHSLRYHSEKLAVAYGLVKLPE 547
+ L ++ L+ GY P+ S VL ++EEE K SL HSEKLA+ YGL+
Sbjct: 626 MSEKVYGKLHEVMEKLKSNGYEPEISQVLQIIEEEEMKEQSLNLHSEKLAICYGLISTEA 685
Query: 548 GVPIRVMKNLRVCGDCHSAIKLISKVMGREIILRDANRFHHFKDGLCSCRDYW 600
IRV+KNLRVCGDCHS KLIS++ REII+RD RFHHF++G CSC D+W
Sbjct: 686 PKVIRVIKNLRVCGDCHSVAKLISQLYDREIIVRDRYRFHHFRNGQCSCNDFW 738
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SHZ8|PP168_ARATH Pentatricopeptide repeat-containing protein At2g22070 OS=Arabidopsis thaliana GN=PCMP-H41 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 446 bits (1146), Expect = e-124, Method: Compositional matrix adjust.
Identities = 240/608 (39%), Positives = 373/608 (61%), Gaps = 13/608 (2%)
Query: 5 NVVSWTAMVRGYVEEGMITEAGTLFWQMPEKNVVSWTVMLGGFIRDSRIDDARRLFDMMP 64
NV +++ Y + G A +F +M +++ SW M+ ++ ++D A F+ M
Sbjct: 180 NVSVSNSLLNMYAKCGDPMMAKFVFDRMVVRDISSWNAMIALHMQVGQMDLAMAQFEQMA 239
Query: 65 EKDVVAQTNMVLGYCQDGRVDEGREIFDEMPKKNVIS-----WTTMISGYVNNNRIDVAR 119
E+D+V +M+ G+ Q G +IF +M + +++S +++S N ++ + +
Sbjct: 240 ERDIVTWNSMISGFNQRGYDLRALDIFSKMLRDSLLSPDRFTLASVLSACANLEKLCIGK 299
Query: 120 KLF-EVMPEKNEVS---WTAMLMGYTQCGRIQDAWELFKAMPMKS--VVASNSMILGLGQ 173
++ ++ ++S A++ Y++CG ++ A L + K + +++ G +
Sbjct: 300 QIHSHIVTTGFDISGIVLNALISMYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIK 359
Query: 174 NGEVQKARVVFDQMREKDDATWSGMIKVYERKGYELEVIDLFTLMQKEGVRVNFPSLISV 233
G++ +A+ +F ++++D W+ MI YE+ G E I+LF M G R N +L ++
Sbjct: 360 LGDMNQAKNIFVSLKDRDVVAWTAMIVGYEQHGSYGEAINLFRSMVGGGQRPNSYTLAAM 419
Query: 234 LSVCASLASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNF-ASKD 292
LSV +SLASL HG+Q+H V+ V V++ LITMY K G + FD +D
Sbjct: 420 LSVASSLASLSHGKQIHGSAVKSGEIYSVSVSNALITMYAKAGNITSASRAFDLIRCERD 479
Query: 293 IVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFE 352
V W S+I AQ+G E++L++F M G+ PD +T VGV SAC++ G V +GR+ F+
Sbjct: 480 TVSWTSMIIALAQHGHAEEALELFETMLMEGLRPDHITYVGVFSACTHAGLVNQGRQYFD 539
Query: 353 SMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAMPFEPDAIIWGSLLGACRTHMKL 412
MK + P HYACMVDL GRAG +++A + IE MP EPD + WGSLL ACR H +
Sbjct: 540 MMKDVDKIIPTLSHYACMVDLFGRAGLLQEAQEFIEKMPIEPDVVTWGSLLSACRVHKNI 599
Query: 413 DLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMRKRNVIKPPGCSWIEV 472
DL +VAA++LL LEP+N+G Y L+N+Y++ G++ + A++RK+M+ V K G SWIEV
Sbjct: 600 DLGKVAAERLLLLEPENSGAYSALANLYSACGKWEEAAKIRKSMKDGRVKKEQGFSWIEV 659
Query: 473 EKKVHMFTGRDCVSHPEHPMIMRMLEKIGGLLREAGYCPDSSFVLHDVDEEEKVHSLRYH 532
+ KVH+F D +HPE I ++KI +++ GY PD++ VLHD++EE K LR+H
Sbjct: 660 KHKVHVFGVEDG-THPEKNEIYMTMKKIWDEIKKMGYVPDTASVLHDLEEEVKEQILRHH 718
Query: 533 SEKLAVAYGLVKLPEGVPIRVMKNLRVCGDCHSAIKLISKVMGREIILRDANRFHHFKDG 592
SEKLA+A+GL+ P+ +R+MKNLRVC DCH+AIK ISK++GREII+RD RFHHFKDG
Sbjct: 719 SEKLAIAFGLISTPDKTTLRIMKNLRVCNDCHTAIKFISKLVGREIIVRDTTRFHHFKDG 778
Query: 593 LCSCRDYW 600
CSCRDYW
Sbjct: 779 FCSCRDYW 786
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9CAA8|PP108_ARATH Putative pentatricopeptide repeat-containing protein At1g68930 OS=Arabidopsis thaliana GN=PCMP-H22 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 441 bits (1133), Expect = e-122, Method: Compositional matrix adjust.
Identities = 232/679 (34%), Positives = 378/679 (55%), Gaps = 81/679 (11%)
Query: 1 MPERNVVSWTAMVRGYVEEGMITEAGTLFWQMPEKNVVSWTVMLGGFIRDSRIDDARRLF 60
+P+ N+ SW ++ Y + G+I+E + F ++P+++ V+W V++ G+ + A + +
Sbjct: 67 IPQPNLFSWNNLLLAYSKAGLISEMESTFEKLPDRDGVTWNVLIEGYSLSGLVGAAVKAY 126
Query: 61 DMMP----------------------------------------EKDVVAQTNMVLGYCQ 80
+ M E ++ + ++ Y
Sbjct: 127 NTMMRDFSANLTRVTLMTMLKLSSSNGHVSLGKQIHGQVIKLGFESYLLVGSPLLYMYAN 186
Query: 81 DGRVDEGREIFDEMPKKNVISWTTMISGYVNNNRIDVARKLFEVMPEKNEVSWTAMLMGY 140
G + + +++F + +N + + +++ G + I+ A +LF M EK+ VSW AM+ G
Sbjct: 187 VGCISDAKKVFYGLDDRNTVMYNSLMGGLLACGMIEDALQLFRGM-EKDSVSWAAMIKGL 245
Query: 141 TQCGRIQDAWELFKAM----------PMKSVVASNSMILGLGQNGEVQK----------- 179
Q G ++A E F+ M P SV+ + + + + ++
Sbjct: 246 AQNGLAKEAIECFREMKVQGLKMDQYPFGSVLPACGGLGAINEGKQIHACIIRTNFQDHI 305
Query: 180 ------------------ARVVFDQMREKDDATWSGMIKVYERKGYELEVIDLFTLMQKE 221
A+ VFD+M++K+ +W+ M+ Y + G E + +F MQ+
Sbjct: 306 YVGSALIDMYCKCKCLHYAKTVFDRMKQKNVVSWTAMVVGYGQTGRAEEAVKIFLDMQRS 365
Query: 222 GVRVNFPSLISVLSVCASLASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKG 281
G+ + +L +S CA+++SL+ G Q H + + V V++ L+T+Y KCG++
Sbjct: 366 GIDPDHYTLGQAISACANVSSLEEGSQFHGKAITSGLIHYVTVSNSLVTLYGKCGDIDDS 425
Query: 282 KLIFDNFASKDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYT 341
+F+ +D V W +++S YAQ+G +++++F +M G+ PD VTL GV+SACS
Sbjct: 426 TRLFNEMNVRDAVSWTAMVSAYAQFGRAVETIQLFDKMVQHGLKPDGVTLTGVISACSRA 485
Query: 342 GKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAMPFEPDAIIWGS 401
G V++G+ F+ M S+Y + P HY+CM+DL R+G++E+AM+ I MPF PDAI W +
Sbjct: 486 GLVEKGQRYFKLMTSEYGIVPSIGHYSCMIDLFSRSGRLEEAMRFINGMPFPPDAIGWTT 545
Query: 402 LLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMRKRNV 461
LL ACR L++ + AA+ L++L+P + Y LLS+IYAS+G++ VA+LR+ MR++NV
Sbjct: 546 LLSACRNKGNLEIGKWAAESLIELDPHHPAGYTLLSSIYASKGKWDSVAQLRRGMREKNV 605
Query: 462 IKPPGCSWIEVEKKVHMFTGRDCVSHPEHPMIMRMLEKIGGLLREAGYCPDSSFVLHDVD 521
K PG SWI+ + K+H F+ D S P I LE++ + + GY PD+SFV HDV+
Sbjct: 606 KKEPGQSWIKWKGKLHSFSADD-ESSPYLDQIYAKLEELNNKIIDNGYKPDTSFVHHDVE 664
Query: 522 EEEKVHSLRYHSEKLAVAYGLVKLPEGVPIRVMKNLRVCGDCHSAIKLISKVMGREIILR 581
E KV L YHSE+LA+A+GL+ +P G PIRV KNLRVC DCH+A K IS V GREI++R
Sbjct: 665 EAVKVKMLNYHSERLAIAFGLIFVPSGQPIRVGKNLRVCVDCHNATKHISSVTGREILVR 724
Query: 582 DANRFHHFKDGLCSCRDYW 600
DA RFH FKDG CSC D+W
Sbjct: 725 DAVRFHRFKDGTCSCGDFW 743
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 600 | ||||||
| 359487569 | 703 | PREDICTED: pentatricopeptide repeat-cont | 0.973 | 0.830 | 0.795 | 0.0 | |
| 224124974 | 703 | predicted protein [Populus trichocarpa] | 0.971 | 0.829 | 0.763 | 0.0 | |
| 449488311 | 785 | PREDICTED: pentatricopeptide repeat-cont | 0.98 | 0.749 | 0.775 | 0.0 | |
| 449453226 | 785 | PREDICTED: pentatricopeptide repeat-cont | 0.98 | 0.749 | 0.775 | 0.0 | |
| 356530157 | 711 | PREDICTED: pentatricopeptide repeat-cont | 0.921 | 0.777 | 0.74 | 0.0 | |
| 357506719 | 707 | Pentatricopeptide repeat-containing prot | 0.998 | 0.847 | 0.728 | 0.0 | |
| 297848224 | 950 | hypothetical protein ARALYDRAFT_337864 [ | 0.97 | 0.612 | 0.721 | 0.0 | |
| 15223594 | 704 | pentatricopeptide repeat-containing prot | 0.965 | 0.822 | 0.718 | 0.0 | |
| 15217508 | 705 | pentatricopeptide repeat-containing prot | 1.0 | 0.851 | 0.683 | 0.0 | |
| 125543632 | 798 | hypothetical protein OsI_11313 [Oryza sa | 0.911 | 0.685 | 0.629 | 0.0 |
| >gi|359487569|ref|XP_002277031.2| PREDICTED: pentatricopeptide repeat-containing protein At1g56690, mitochondrial-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1008 bits (2607), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 477/600 (79%), Positives = 538/600 (89%)
Query: 1 MPERNVVSWTAMVRGYVEEGMITEAGTLFWQMPEKNVVSWTVMLGGFIRDSRIDDARRLF 60
MPERNVVSWTAMVRGYV+EG+++EA TLFWQMPEKNVVSWTVMLGG I+ RID+AR LF
Sbjct: 104 MPERNVVSWTAMVRGYVQEGLVSEAETLFWQMPEKNVVSWTVMLGGLIQVRRIDEARGLF 163
Query: 61 DMMPEKDVVAQTNMVLGYCQDGRVDEGREIFDEMPKKNVISWTTMISGYVNNNRIDVARK 120
D+MP KDVVA+TNM+ GYCQ+GR+ E RE+FDEMP++NVISWTTMISGYV N ++DVARK
Sbjct: 164 DIMPVKDVVARTNMISGYCQEGRLAEARELFDEMPRRNVISWTTMISGYVQNGQVDVARK 223
Query: 121 LFEVMPEKNEVSWTAMLMGYTQCGRIQDAWELFKAMPMKSVVASNSMILGLGQNGEVQKA 180
LFEVMPEKNEVSWTAMLMGYTQ GRI++A ELF AMP+K+VVA N+MILG GQNGEV KA
Sbjct: 224 LFEVMPEKNEVSWTAMLMGYTQGGRIEEASELFDAMPVKAVVACNAMILGFGQNGEVAKA 283
Query: 181 RVVFDQMREKDDATWSGMIKVYERKGYELEVIDLFTLMQKEGVRVNFPSLISVLSVCASL 240
R VFDQ+REKDD TWS MIKVYERKG+E+E ++LF LMQ+EGV+ NFPSLISVLSVCASL
Sbjct: 284 RQVFDQIREKDDGTWSAMIKVYERKGFEVEALNLFALMQREGVQSNFPSLISVLSVCASL 343
Query: 241 ASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFASKDIVMWNSII 300
ASLDHGRQVHA+LV+ QFD DV+VASVLITMY+KCG+LVK + IFD F+ KDIVMWNSII
Sbjct: 344 ASLDHGRQVHAELVKSQFDSDVFVASVLITMYVKCGDLVKARQIFDRFSPKDIVMWNSII 403
Query: 301 SGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLV 360
+GYAQ+GL E++L+VFHEM SSG+ D VT VGVLSACSYTGKVKEG EIFESMKSKYLV
Sbjct: 404 TGYAQHGLVEEALQVFHEMCSSGMATDGVTFVGVLSACSYTGKVKEGLEIFESMKSKYLV 463
Query: 361 EPKTEHYACMVDLLGRAGQVEDAMKLIEAMPFEPDAIIWGSLLGACRTHMKLDLAEVAAK 420
EPKTEHYACMVDLLGRAG V DAM LI+ MP E DAIIWG+LLGACRTHM ++LAEVAAK
Sbjct: 464 EPKTEHYACMVDLLGRAGLVNDAMDLIQKMPVEADAIIWGALLGACRTHMNMNLAEVAAK 523
Query: 421 KLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMRKRNVIKPPGCSWIEVEKKVHMFT 480
KLLQLEPKNAGPYILLSNIYAS+GR+ DVAELR+NMR + V K PGCSWIEVEK+VHMFT
Sbjct: 524 KLLQLEPKNAGPYILLSNIYASKGRWGDVAELRRNMRVKKVSKSPGCSWIEVEKRVHMFT 583
Query: 481 GRDCVSHPEHPMIMRMLEKIGGLLREAGYCPDSSFVLHDVDEEEKVHSLRYHSEKLAVAY 540
G HPE IM+MLEK+ G+LREAGY PDSSFVLHDVDEEEKV SL +HSE+LAVA+
Sbjct: 584 GGVSTKHPELSSIMKMLEKLDGMLREAGYYPDSSFVLHDVDEEEKVRSLGHHSERLAVAF 643
Query: 541 GLVKLPEGVPIRVMKNLRVCGDCHSAIKLISKVMGREIILRDANRFHHFKDGLCSCRDYW 600
GL+K+PEG+PIRVMKNLRVCGDCHSAIKLI+K+ GREIILRDANRFHHFKDG CSCRDYW
Sbjct: 644 GLLKVPEGMPIRVMKNLRVCGDCHSAIKLIAKITGREIILRDANRFHHFKDGFCSCRDYW 703
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224124974|ref|XP_002319471.1| predicted protein [Populus trichocarpa] gi|222857847|gb|EEE95394.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 992 bits (2564), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 458/600 (76%), Positives = 526/600 (87%)
Query: 1 MPERNVVSWTAMVRGYVEEGMITEAGTLFWQMPEKNVVSWTVMLGGFIRDSRIDDARRLF 60
MPERNVVSWT+MVRGYV+EG+I EA LFW+MPEKNVVSWTVMLGG I D R+D+ARRLF
Sbjct: 104 MPERNVVSWTSMVRGYVQEGLIDEAELLFWRMPEKNVVSWTVMLGGLIEDGRVDEARRLF 163
Query: 61 DMMPEKDVVAQTNMVLGYCQDGRVDEGREIFDEMPKKNVISWTTMISGYVNNNRIDVARK 120
DM+P KDVVA TNM+ G C +GR+ E REIFDEMP++NV++WT+MISGY NN++DVARK
Sbjct: 164 DMIPVKDVVASTNMIGGLCSEGRLSEAREIFDEMPQRNVVAWTSMISGYAMNNKVDVARK 223
Query: 121 LFEVMPEKNEVSWTAMLMGYTQCGRIQDAWELFKAMPMKSVVASNSMILGLGQNGEVQKA 180
LFEVMP+KNEV+WTAML GYT+ GRI +A ELFKAMP+K V A N MI+G G NGEV KA
Sbjct: 224 LFEVMPDKNEVTWTAMLKGYTRSGRINEAAELFKAMPVKPVAACNGMIMGFGLNGEVGKA 283
Query: 181 RVVFDQMREKDDATWSGMIKVYERKGYELEVIDLFTLMQKEGVRVNFPSLISVLSVCASL 240
R VFDQM+EKDD TWS +IK+YERKG+ELE + LF+LMQ+EGVR NFPS+IS+LSVC SL
Sbjct: 284 RWVFDQMKEKDDGTWSALIKIYERKGFELEALALFSLMQREGVRPNFPSIISILSVCGSL 343
Query: 241 ASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFASKDIVMWNSII 300
ASLDHGRQVH+QLVR FD+D+YV+SVLITMYIKCG+LV GK +FD F+SKDIVMWNSII
Sbjct: 344 ASLDHGRQVHSQLVRSHFDLDIYVSSVLITMYIKCGDLVTGKRVFDRFSSKDIVMWNSII 403
Query: 301 SGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLV 360
+GYAQ+G GEK+L+VFHEMFSSG PD++T +GVLSAC YTGKVKEG EIFESMKSKY V
Sbjct: 404 AGYAQHGFGEKALEVFHEMFSSGAAPDEITFIGVLSACGYTGKVKEGLEIFESMKSKYQV 463
Query: 361 EPKTEHYACMVDLLGRAGQVEDAMKLIEAMPFEPDAIIWGSLLGACRTHMKLDLAEVAAK 420
+ KTEHYACMVDLLGRAG++ +AM LIE MP E DAI+WG+LL ACRTH LDLAE+AAK
Sbjct: 464 DQKTEHYACMVDLLGRAGKLNEAMNLIENMPVEADAIVWGALLSACRTHKNLDLAEIAAK 523
Query: 421 KLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMRKRNVIKPPGCSWIEVEKKVHMFT 480
KLLQLEP +AGPYILLSN+YASQ R+ DVAELRK MR RNV K PGCSWIEV+ KVHMFT
Sbjct: 524 KLLQLEPSSAGPYILLSNLYASQSRWKDVAELRKTMRARNVSKSPGCSWIEVDNKVHMFT 583
Query: 481 GRDCVSHPEHPMIMRMLEKIGGLLREAGYCPDSSFVLHDVDEEEKVHSLRYHSEKLAVAY 540
G SHPEH MIM+ LEK+G LREAGYCPD SFV+HDVDEE+KVHSLR+HSEK+AVAY
Sbjct: 584 GGGSASHPEHEMIMKKLEKLGASLREAGYCPDGSFVMHDVDEEDKVHSLRHHSEKMAVAY 643
Query: 541 GLVKLPEGVPIRVMKNLRVCGDCHSAIKLISKVMGREIILRDANRFHHFKDGLCSCRDYW 600
GL+K+P G PIRVMKNLRVCGDCHSAIKLI++V GREIILRDANRFHHFKDGLCSCRD+W
Sbjct: 644 GLLKVPVGKPIRVMKNLRVCGDCHSAIKLIAQVTGREIILRDANRFHHFKDGLCSCRDFW 703
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449488311|ref|XP_004157997.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690, mitochondrial-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 984 bits (2544), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 465/600 (77%), Positives = 525/600 (87%)
Query: 1 MPERNVVSWTAMVRGYVEEGMITEAGTLFWQMPEKNVVSWTVMLGGFIRDSRIDDARRLF 60
MPERNVVSWTAMVRGYV+EGMI+EA TLFWQMPEKNVVSWTVMLGG +++ RID+A RLF
Sbjct: 186 MPERNVVSWTAMVRGYVKEGMISEAETLFWQMPEKNVVSWTVMLGGLLQEGRIDEACRLF 245
Query: 61 DMMPEKDVVAQTNMVLGYCQDGRVDEGREIFDEMPKKNVISWTTMISGYVNNNRIDVARK 120
DMMPEKDVV +TNM+ GYCQ GR+ E R +FDEMP++NV+SWTTMI+GYV N ++D+ARK
Sbjct: 246 DMMPEKDVVTRTNMIGGYCQVGRLVEARMLFDEMPRRNVVSWTTMITGYVQNQQVDIARK 305
Query: 121 LFEVMPEKNEVSWTAMLMGYTQCGRIQDAWELFKAMPMKSVVASNSMILGLGQNGEVQKA 180
LFEVMPEKNEVSWTAML GYT CGR+ +A ELF AMP+KSVVA N+MIL GQNGEV KA
Sbjct: 306 LFEVMPEKNEVSWTAMLKGYTNCGRLDEASELFNAMPIKSVVACNAMILCFGQNGEVPKA 365
Query: 181 RVVFDQMREKDDATWSGMIKVYERKGYELEVIDLFTLMQKEGVRVNFPSLISVLSVCASL 240
R VFDQMREKD+ TWS MIKVYERKG EL+ ++LF +MQ+EG+R NFPSLISVLSVCA L
Sbjct: 366 RQVFDQMREKDEGTWSAMIKVYERKGLELDALELFRMMQREGIRPNFPSLISVLSVCAGL 425
Query: 241 ASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFASKDIVMWNSII 300
A+LDHGR++HAQLVR QFD+DVYVASVL++MYIKCG L K K +FD FA KD+VMWNSII
Sbjct: 426 ANLDHGREIHAQLVRSQFDLDVYVASVLLSMYIKCGNLAKAKQVFDRFAVKDVVMWNSII 485
Query: 301 SGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLV 360
+GYAQ+GLG ++L+VFH+M SG+MPDDVT VGVLSACSYTG VK+G EIF SM++KY V
Sbjct: 486 TGYAQHGLGVEALRVFHDMHFSGIMPDDVTFVGVLSACSYTGNVKKGLEIFNSMETKYQV 545
Query: 361 EPKTEHYACMVDLLGRAGQVEDAMKLIEAMPFEPDAIIWGSLLGACRTHMKLDLAEVAAK 420
E K EHYACMVDLLGRAG++ +AM LIE MP E DAIIWG+LLGACRTHMKLDLAEVAAK
Sbjct: 546 EQKIEHYACMVDLLGRAGKLNEAMDLIEKMPMEADAIIWGALLGACRTHMKLDLAEVAAK 605
Query: 421 KLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMRKRNVIKPPGCSWIEVEKKVHMFT 480
KLL LEPKNAGP+ILLSNIYASQGR+ DVAELR+NMR R V K PGCSWI VEKKVH FT
Sbjct: 606 KLLVLEPKNAGPFILLSNIYASQGRWDDVAELRRNMRDRRVSKYPGCSWIVVEKKVHKFT 665
Query: 481 GRDCVSHPEHPMIMRMLEKIGGLLREAGYCPDSSFVLHDVDEEEKVHSLRYHSEKLAVAY 540
G D HPEH I R+LE + GLLREAGY PD SFVLHDVDEEEKV SL YHSEKLAVAY
Sbjct: 666 GGDSSGHPEHSEINRILEWLSGLLREAGYYPDQSFVLHDVDEEEKVQSLEYHSEKLAVAY 725
Query: 541 GLVKLPEGVPIRVMKNLRVCGDCHSAIKLISKVMGREIILRDANRFHHFKDGLCSCRDYW 600
GL+K+P G+PIRVMKNLRVCGDCH+AIKLI+KV GREIILRDANRFHHFKDG CSCRDYW
Sbjct: 726 GLLKIPIGMPIRVMKNLRVCGDCHAAIKLIAKVTGREIILRDANRFHHFKDGSCSCRDYW 785
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449453226|ref|XP_004144359.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690, mitochondrial-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 984 bits (2544), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 465/600 (77%), Positives = 525/600 (87%)
Query: 1 MPERNVVSWTAMVRGYVEEGMITEAGTLFWQMPEKNVVSWTVMLGGFIRDSRIDDARRLF 60
MPERNVVSWTAMVRGYV+EGMI+EA TLFWQMPEKNVVSWTVMLGG +++ RID+A RLF
Sbjct: 186 MPERNVVSWTAMVRGYVKEGMISEAETLFWQMPEKNVVSWTVMLGGLLQEGRIDEACRLF 245
Query: 61 DMMPEKDVVAQTNMVLGYCQDGRVDEGREIFDEMPKKNVISWTTMISGYVNNNRIDVARK 120
DMMPEKDVV +TNM+ GYCQ GR+ E R +FDEMP++NV+SWTTMI+GYV N ++D+ARK
Sbjct: 246 DMMPEKDVVTRTNMIGGYCQVGRLVEARMLFDEMPRRNVVSWTTMITGYVQNQQVDIARK 305
Query: 121 LFEVMPEKNEVSWTAMLMGYTQCGRIQDAWELFKAMPMKSVVASNSMILGLGQNGEVQKA 180
LFEVMPEKNEVSWTAML GYT CGR+ +A ELF AMP+KSVVA N+MIL GQNGEV KA
Sbjct: 306 LFEVMPEKNEVSWTAMLKGYTNCGRLDEASELFNAMPIKSVVACNAMILCFGQNGEVPKA 365
Query: 181 RVVFDQMREKDDATWSGMIKVYERKGYELEVIDLFTLMQKEGVRVNFPSLISVLSVCASL 240
R VFDQMREKD+ TWS MIKVYERKG EL+ ++LF +MQ+EG+R NFPSLISVLSVCA L
Sbjct: 366 RQVFDQMREKDEGTWSAMIKVYERKGLELDALELFRMMQREGIRPNFPSLISVLSVCAGL 425
Query: 241 ASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFASKDIVMWNSII 300
A+LDHGR++HAQLVR QFD+DVYVASVL++MYIKCG L K K +FD FA KD+VMWNSII
Sbjct: 426 ANLDHGREIHAQLVRSQFDLDVYVASVLLSMYIKCGNLAKAKQVFDRFAVKDVVMWNSII 485
Query: 301 SGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLV 360
+GYAQ+GLG ++L+VFH+M SG+MPDDVT VGVLSACSYTG VK+G EIF SM++KY V
Sbjct: 486 TGYAQHGLGVEALRVFHDMHFSGIMPDDVTFVGVLSACSYTGNVKKGLEIFNSMETKYQV 545
Query: 361 EPKTEHYACMVDLLGRAGQVEDAMKLIEAMPFEPDAIIWGSLLGACRTHMKLDLAEVAAK 420
E K EHYACMVDLLGRAG++ +AM LIE MP E DAIIWG+LLGACRTHMKLDLAEVAAK
Sbjct: 546 EQKIEHYACMVDLLGRAGKLNEAMDLIEKMPMEADAIIWGALLGACRTHMKLDLAEVAAK 605
Query: 421 KLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMRKRNVIKPPGCSWIEVEKKVHMFT 480
KLL LEPKNAGP+ILLSNIYASQGR+ DVAELR+NMR R V K PGCSWI VEKKVH FT
Sbjct: 606 KLLVLEPKNAGPFILLSNIYASQGRWDDVAELRRNMRDRRVSKYPGCSWIVVEKKVHKFT 665
Query: 481 GRDCVSHPEHPMIMRMLEKIGGLLREAGYCPDSSFVLHDVDEEEKVHSLRYHSEKLAVAY 540
G D HPEH I R+LE + GLLREAGY PD SFVLHDVDEEEKV SL YHSEKLAVAY
Sbjct: 666 GGDSSGHPEHSEINRILEWLSGLLREAGYYPDQSFVLHDVDEEEKVQSLEYHSEKLAVAY 725
Query: 541 GLVKLPEGVPIRVMKNLRVCGDCHSAIKLISKVMGREIILRDANRFHHFKDGLCSCRDYW 600
GL+K+P G+PIRVMKNLRVCGDCH+AIKLI+KV GREIILRDANRFHHFKDG CSCRDYW
Sbjct: 726 GLLKIPIGMPIRVMKNLRVCGDCHAAIKLIAKVTGREIILRDANRFHHFKDGSCSCRDYW 785
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356530157|ref|XP_003533650.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690, mitochondrial-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 962 bits (2486), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 444/600 (74%), Positives = 518/600 (86%)
Query: 1 MPERNVVSWTAMVRGYVEEGMITEAGTLFWQMPEKNVVSWTVMLGGFIRDSRIDDARRLF 60
MP+RNVVSWT+MVRGYV G + EA LFW MP KNVVSWTVMLGG +++ R+DDAR+LF
Sbjct: 112 MPDRNVVSWTSMVRGYVRNGDVAEAERLFWHMPHKNVVSWTVMLGGLLQEGRVDDARKLF 171
Query: 61 DMMPEKDVVAQTNMVLGYCQDGRVDEGREIFDEMPKKNVISWTTMISGYVNNNRIDVARK 120
DMMPEKDVVA TNM+ GYC++GR+DE R +FDEMPK+NV++WT M+SGY N ++DVARK
Sbjct: 172 DMMPEKDVVAVTNMIGGYCEEGRLDEARALFDEMPKRNVVTWTAMVSGYARNGKVDVARK 231
Query: 121 LFEVMPEKNEVSWTAMLMGYTQCGRIQDAWELFKAMPMKSVVASNSMILGLGQNGEVQKA 180
LFEVMPE+NEVSWTAML+GYT GR+++A LF AMP+K VV N MI+G G NGEV KA
Sbjct: 232 LFEVMPERNEVSWTAMLLGYTHSGRMREASSLFDAMPVKPVVVCNEMIMGFGLNGEVDKA 291
Query: 181 RVVFDQMREKDDATWSGMIKVYERKGYELEVIDLFTLMQKEGVRVNFPSLISVLSVCASL 240
R VF M+E+D+ TWS MIKVYERKGYELE + LF MQ+EG+ +NFPSLISVLSVC SL
Sbjct: 292 RRVFKGMKERDNGTWSAMIKVYERKGYELEALGLFRRMQREGLALNFPSLISVLSVCVSL 351
Query: 241 ASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFASKDIVMWNSII 300
ASLDHG+QVHAQLVR +FD D+YVASVLITMY+KCG LV+ K +F+ F KD+VMWNS+I
Sbjct: 352 ASLDHGKQVHAQLVRSEFDQDLYVASVLITMYVKCGNLVRAKQVFNRFPLKDVVMWNSMI 411
Query: 301 SGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLV 360
+GY+Q+GLGE++L VFH+M SSGV PDDVT +GVLSACSY+GKVKEG E+FE+MK KY V
Sbjct: 412 TGYSQHGLGEEALNVFHDMCSSGVPPDDVTFIGVLSACSYSGKVKEGLELFETMKCKYQV 471
Query: 361 EPKTEHYACMVDLLGRAGQVEDAMKLIEAMPFEPDAIIWGSLLGACRTHMKLDLAEVAAK 420
EP EHYAC+VDLLGRA QV +AMKL+E MP EPDAI+WG+LLGACRTHMKLDLAEVA +
Sbjct: 472 EPGIEHYACLVDLLGRADQVNEAMKLVEKMPMEPDAIVWGALLGACRTHMKLDLAEVAVE 531
Query: 421 KLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMRKRNVIKPPGCSWIEVEKKVHMFT 480
KL QLEPKNAGPY+LLSN+YA +GR+ DV LR+ ++ R+V K PGCSWIEVEKKVHMFT
Sbjct: 532 KLAQLEPKNAGPYVLLSNMYAYKGRWRDVEVLREKIKARSVTKLPGCSWIEVEKKVHMFT 591
Query: 481 GRDCVSHPEHPMIMRMLEKIGGLLREAGYCPDSSFVLHDVDEEEKVHSLRYHSEKLAVAY 540
G D HPE P+IM+MLEK+GGLLREAGYCPD SFVLHDVDEEEK HSL YHSEKLAVAY
Sbjct: 592 GGDSKGHPEQPIIMKMLEKLGGLLREAGYCPDGSFVLHDVDEEEKTHSLGYHSEKLAVAY 651
Query: 541 GLVKLPEGVPIRVMKNLRVCGDCHSAIKLISKVMGREIILRDANRFHHFKDGLCSCRDYW 600
GL+K+PEG+PIRVMKNLRVCGDCHSAIKLI+KV GREIILRDANRFHHFKDG CSC+DYW
Sbjct: 652 GLLKVPEGMPIRVMKNLRVCGDCHSAIKLIAKVTGREIILRDANRFHHFKDGHCSCKDYW 711
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357506719|ref|XP_003623648.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|355498663|gb|AES79866.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 945 bits (2443), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 437/600 (72%), Positives = 524/600 (87%), Gaps = 1/600 (0%)
Query: 1 MPERNVVSWTAMVRGYVEEGMITEAGTLFWQMPEKNVVSWTVMLGGFIRDSRIDDARRLF 60
MPERNVVSWT+MVRGYV+EGM+ EA LFW+MP +NVVSWTVM+GG +++SRIDDA++LF
Sbjct: 109 MPERNVVSWTSMVRGYVQEGMVEEAEKLFWEMPRRNVVSWTVMIGGLLKESRIDDAKKLF 168
Query: 61 DMMPEKDVVAQTNMVLGYCQDGRVDEGREIFDEMPKKNVISWTTMISGYVNNNRIDVARK 120
DM+PEKDVV TNM+ GYCQ GR+DE RE+FDEM +NV +WTTM+SGY N R+DVARK
Sbjct: 169 DMIPEKDVVVVTNMIGGYCQVGRLDEARELFDEMKVRNVFTWTTMVSGYAKNGRVDVARK 228
Query: 121 LFEVMPEKNEVSWTAMLMGYTQCGRIQDAWELFKAMPMKSVVASNSMILGLGQNGEVQKA 180
LFEVMPE+NEVSWTAMLMGYTQ GR+++A+ELF+AMP+K +VA N MIL G GE+ +A
Sbjct: 229 LFEVMPERNEVSWTAMLMGYTQSGRMKEAFELFEAMPVKWIVACNEMILQFGLAGEMHRA 288
Query: 181 RVVFDQMREKDDATWSGMIKVYERKGYELEVIDLFTLMQKEGVRVNFPSLISVLSVCASL 240
R++F+ M+E+D+ TW+ MIKV+ERKG +LE + LF MQ+EGV +NFPS+ISVLSVCASL
Sbjct: 289 RMMFEGMKERDEGTWNAMIKVFERKGLDLEALGLFARMQREGVALNFPSMISVLSVCASL 348
Query: 241 ASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFASKDIVMWNSII 300
ASLDHGRQVHA+LVR +FD D+YVASVLITMY+KCG+LV+ K IF+ F KD+VMWNS+I
Sbjct: 349 ASLDHGRQVHARLVRSEFDQDLYVASVLITMYVKCGDLVRAKGIFNRFLFKDVVMWNSMI 408
Query: 301 SGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLV 360
+GY+Q+GLGE++L VFH+M SSGV PD+VT +GVLSACSY+GKVKEG EIFE+MK Y V
Sbjct: 409 TGYSQHGLGEEALNVFHDMCSSGVQPDEVTFIGVLSACSYSGKVKEGFEIFEAMKCTYQV 468
Query: 361 EPKTEHYACMVDLLGRAGQVEDAMKLIEAMPFEPDAIIWGSLLGACRTHMKLDLAEVAAK 420
EP EHYACMVDLLGRAG+V++AM+L+E MP EPDAI+WG+LLGACR HMKLDLAEVA +
Sbjct: 469 EPGIEHYACMVDLLGRAGRVDEAMELVEKMPMEPDAIVWGALLGACRNHMKLDLAEVAVE 528
Query: 421 KLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMRKRNVIKPPGCSWIEVEKKVHMFT 480
KL +LEPKNAGPY+LLS++YA++GR+ DV LRK + +R VIK PGCSWIEVEKKVHMFT
Sbjct: 529 KLAKLEPKNAGPYVLLSHMYATKGRWRDVEVLRKKINRR-VIKFPGCSWIEVEKKVHMFT 587
Query: 481 GRDCVSHPEHPMIMRMLEKIGGLLREAGYCPDSSFVLHDVDEEEKVHSLRYHSEKLAVAY 540
G D SHPE MI +MLEK+ G LREAGYCPD SFVLHDVDEEEK HSL YHSE+LAVAY
Sbjct: 588 GGDSKSHPEQHMITQMLEKLSGFLREAGYCPDGSFVLHDVDEEEKTHSLGYHSERLAVAY 647
Query: 541 GLVKLPEGVPIRVMKNLRVCGDCHSAIKLISKVMGREIILRDANRFHHFKDGLCSCRDYW 600
GL+K+PEG+PIRVMKNLRVCGDCHSAIKLI+KV GREIILRDANRFHHFKDG CSC+D+W
Sbjct: 648 GLLKVPEGMPIRVMKNLRVCGDCHSAIKLIAKVTGREIILRDANRFHHFKDGSCSCKDFW 707
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297848224|ref|XP_002891993.1| hypothetical protein ARALYDRAFT_337864 [Arabidopsis lyrata subsp. lyrata] gi|297337835|gb|EFH68252.1| hypothetical protein ARALYDRAFT_337864 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 924 bits (2388), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 432/599 (72%), Positives = 509/599 (84%)
Query: 1 MPERNVVSWTAMVRGYVEEGMITEAGTLFWQMPEKNVVSWTVMLGGFIRDSRIDDARRLF 60
MPERNVVSWTAMV+GYV+EGM+ EA LFW+MPE+N VSWTVM GG I RIDDAR+L+
Sbjct: 105 MPERNVVSWTAMVKGYVQEGMVVEAELLFWRMPERNEVSWTVMFGGLIDGGRIDDARKLY 164
Query: 61 DMMPEKDVVAQTNMVLGYCQDGRVDEGREIFDEMPKKNVISWTTMISGYVNNNRIDVARK 120
DMMP KDVVA TNM+ G C++GRVDE REIFDEM ++NVI+WTTMI+GY N R+DVARK
Sbjct: 165 DMMPGKDVVASTNMIGGLCREGRVDEAREIFDEMRERNVITWTTMITGYGQNKRVDVARK 224
Query: 121 LFEVMPEKNEVSWTAMLMGYTQCGRIQDAWELFKAMPMKSVVASNSMILGLGQNGEVQKA 180
LFEVMPEK EVSWT+ML+GYT GRI+DA E F+ MPMK V+A N+MI+ LG+ GE+ KA
Sbjct: 225 LFEVMPEKTEVSWTSMLLGYTLSGRIEDAEEFFEVMPMKPVIACNAMIVALGEVGEIVKA 284
Query: 181 RVVFDQMREKDDATWSGMIKVYERKGYELEVIDLFTLMQKEGVRVNFPSLISVLSVCASL 240
R VFDQM ++D+ATW GMIK YERKG+ELE ++LF MQ++GVR +FPSLIS+LSVCA+L
Sbjct: 285 RRVFDQMEDRDNATWRGMIKAYERKGFELEALELFAQMQRQGVRPSFPSLISILSVCATL 344
Query: 241 ASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFASKDIVMWNSII 300
ASL +GRQVHA LVRCQFD DVYVASVL+TMY+KCGELVK KL+FD F SKDI+MWNSII
Sbjct: 345 ASLQYGRQVHAHLVRCQFDGDVYVASVLMTMYVKCGELVKAKLVFDRFPSKDIIMWNSII 404
Query: 301 SGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLV 360
SGYA +GLGE++LKVFHEM SG MP+ VTL+ +L+ACSY GK++EG EIFESM+SK+ V
Sbjct: 405 SGYASHGLGEEALKVFHEMPLSGTMPNKVTLIAILTACSYGGKLEEGLEIFESMESKFCV 464
Query: 361 EPKTEHYACMVDLLGRAGQVEDAMKLIEAMPFEPDAIIWGSLLGACRTHMKLDLAEVAAK 420
P EHY+C VD+LGRAG+V+ AM+LI +M +PDA +WG+LLGAC+TH +LDLAEVAAK
Sbjct: 465 TPTVEHYSCTVDMLGRAGKVDKAMELINSMTIKPDATVWGALLGACKTHSRLDLAEVAAK 524
Query: 421 KLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMRKRNVIKPPGCSWIEVEKKVHMFT 480
KL ++EP+NAGPYILLS+I AS+ ++ DVAE+RKNMR +NV K PGCSWIEV KKVHMFT
Sbjct: 525 KLFEIEPENAGPYILLSSINASRSKWGDVAEMRKNMRTKNVSKFPGCSWIEVGKKVHMFT 584
Query: 481 GRDCVSHPEHPMIMRMLEKIGGLLREAGYCPDSSFVLHDVDEEEKVHSLRYHSEKLAVAY 540
+HPE MI+ MLEK GLLREAGY PD S VLHDVDEEEKV SL HSE+LAVAY
Sbjct: 585 RGGIRNHPEQAMILMMLEKTDGLLREAGYSPDCSHVLHDVDEEEKVDSLSRHSERLAVAY 644
Query: 541 GLVKLPEGVPIRVMKNLRVCGDCHSAIKLISKVMGREIILRDANRFHHFKDGLCSCRDY 599
GL+KLPEGVPIRVMKNLRVCGDCH+AIKLISKV REIILRDANRFHHF +G CSCRDY
Sbjct: 645 GLLKLPEGVPIRVMKNLRVCGDCHAAIKLISKVTEREIILRDANRFHHFNNGECSCRDY 703
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15223594|ref|NP_176062.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|75173061|sp|Q9FXB9.1|PPR84_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g56690, mitochondrial; Flags: Precursor gi|9954744|gb|AAG09095.1|AC009323_6 Hypothetical protein [Arabidopsis thaliana] gi|332195302|gb|AEE33423.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 922 bits (2384), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 431/600 (71%), Positives = 508/600 (84%)
Query: 1 MPERNVVSWTAMVRGYVEEGMITEAGTLFWQMPEKNVVSWTVMLGGFIRDSRIDDARRLF 60
MPERNVVSWTAMV+GY++EGM+ EA +LFW+MPE+N VSWTVM GG I D RID AR+L+
Sbjct: 105 MPERNVVSWTAMVKGYMQEGMVGEAESLFWRMPERNEVSWTVMFGGLIDDGRIDKARKLY 164
Query: 61 DMMPEKDVVAQTNMVLGYCQDGRVDEGREIFDEMPKKNVISWTTMISGYVNNNRIDVARK 120
DMMP KDVVA TNM+ G C++GRVDE R IFDEM ++NV++WTTMI+GY NNR+DVARK
Sbjct: 165 DMMPVKDVVASTNMIGGLCREGRVDEARLIFDEMRERNVVTWTTMITGYRQNNRVDVARK 224
Query: 121 LFEVMPEKNEVSWTAMLMGYTQCGRIQDAWELFKAMPMKSVVASNSMILGLGQNGEVQKA 180
LFEVMPEK EVSWT+ML+GYT GRI+DA E F+ MPMK V+A N+MI+G G+ GE+ KA
Sbjct: 225 LFEVMPEKTEVSWTSMLLGYTLSGRIEDAEEFFEVMPMKPVIACNAMIVGFGEVGEISKA 284
Query: 181 RVVFDQMREKDDATWSGMIKVYERKGYELEVIDLFTLMQKEGVRVNFPSLISVLSVCASL 240
R VFD M ++D+ATW GMIK YERKG+ELE +DLF MQK+GVR +FPSLIS+LSVCA+L
Sbjct: 285 RRVFDLMEDRDNATWRGMIKAYERKGFELEALDLFAQMQKQGVRPSFPSLISILSVCATL 344
Query: 241 ASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFASKDIVMWNSII 300
ASL +GRQVHA LVRCQFD DVYVASVL+TMY+KCGELVK KL+FD F+SKDI+MWNSII
Sbjct: 345 ASLQYGRQVHAHLVRCQFDDDVYVASVLMTMYVKCGELVKAKLVFDRFSSKDIIMWNSII 404
Query: 301 SGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLV 360
SGYA +GLGE++LK+FHEM SSG MP+ VTL+ +L+ACSY GK++EG EIFESM+SK+ V
Sbjct: 405 SGYASHGLGEEALKIFHEMPSSGTMPNKVTLIAILTACSYAGKLEEGLEIFESMESKFCV 464
Query: 361 EPKTEHYACMVDLLGRAGQVEDAMKLIEAMPFEPDAIIWGSLLGACRTHMKLDLAEVAAK 420
P EHY+C VD+LGRAGQV+ AM+LIE+M +PDA +WG+LLGAC+TH +LDLAEVAAK
Sbjct: 465 TPTVEHYSCTVDMLGRAGQVDKAMELIESMTIKPDATVWGALLGACKTHSRLDLAEVAAK 524
Query: 421 KLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMRKRNVIKPPGCSWIEVEKKVHMFT 480
KL + EP NAG Y+LLS+I AS+ ++ DVA +RKNMR NV K PGCSWIEV KKVHMFT
Sbjct: 525 KLFENEPDNAGTYVLLSSINASRSKWGDVAVVRKNMRTNNVSKFPGCSWIEVGKKVHMFT 584
Query: 481 GRDCVSHPEHPMIMRMLEKIGGLLREAGYCPDSSFVLHDVDEEEKVHSLRYHSEKLAVAY 540
+HPE MI+ MLEK GLLREAGY PD S VLHDVDEEEKV SL HSE+LAVAY
Sbjct: 585 RGGIKNHPEQAMILMMLEKTDGLLREAGYSPDCSHVLHDVDEEEKVDSLSRHSERLAVAY 644
Query: 541 GLVKLPEGVPIRVMKNLRVCGDCHSAIKLISKVMGREIILRDANRFHHFKDGLCSCRDYW 600
GL+KLPEGVPIRVMKNLRVCGDCH+AIKLISKV REIILRDANRFHHF +G CSCRDYW
Sbjct: 645 GLLKLPEGVPIRVMKNLRVCGDCHAAIKLISKVTEREIILRDANRFHHFNNGECSCRDYW 704
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15217508|ref|NP_172412.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|193806401|sp|Q56XI1.2|PPR25_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g09410 gi|3482916|gb|AAC33201.1| Hypothetical protein [Arabidopsis thaliana] gi|91805759|gb|ABE65608.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|332190317|gb|AEE28438.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 882 bits (2278), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 411/601 (68%), Positives = 506/601 (84%), Gaps = 1/601 (0%)
Query: 1 MPERNVVSWTAMVRGYVEEGMITEAGTLFWQMPEKNVVSWTVMLGGFIRDSRIDDARRLF 60
MPERNVVSWTA+V+GYV G + A +LFW+MPEKN VSWTVML GF++D RIDDA +L+
Sbjct: 105 MPERNVVSWTALVKGYVHNGKVDVAESLFWKMPEKNKVSWTVMLIGFLQDGRIDDACKLY 164
Query: 61 DMMPEKDVVAQTNMVLGYCQDGRVDEGREIFDEMPKKNVISWTTMISGYVNNNRIDVARK 120
+M+P+KD +A+T+M+ G C++GRVDE REIFDEM +++VI+WTTM++GY NNR+D ARK
Sbjct: 165 EMIPDKDNIARTSMIHGLCKEGRVDEAREIFDEMSERSVITWTTMVTGYGQNNRVDDARK 224
Query: 121 LFEVMPEKNEVSWTAMLMGYTQCGRIQDAWELFKAMPMKSVVASNSMILGLGQNGEVQKA 180
+F+VMPEK EVSWT+MLMGY Q GRI+DA ELF+ MP+K V+A N+MI GLGQ GE+ KA
Sbjct: 225 IFDVMPEKTEVSWTSMLMGYVQNGRIEDAEELFEVMPVKPVIACNAMISGLGQKGEIAKA 284
Query: 181 RVVFDQMREKDDATWSGMIKVYERKGYELEVIDLFTLMQKEGVRVNFPSLISVLSVCASL 240
R VFD M+E++DA+W +IK++ER G+ELE +DLF LMQK+GVR FP+LIS+LSVCASL
Sbjct: 285 RRVFDSMKERNDASWQTVIKIHERNGFELEALDLFILMQKQGVRPTFPTLISILSVCASL 344
Query: 241 ASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFASKDIVMWNSII 300
ASL HG+QVHAQLVRCQFDVDVYVASVL+TMYIKCGELVK KLIFD F SKDI+MWNSII
Sbjct: 345 ASLHHGKQVHAQLVRCQFDVDVYVASVLMTMYIKCGELVKSKLIFDRFPSKDIIMWNSII 404
Query: 301 SGYAQYGLGEKSLKVFHEM-FSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYL 359
SGYA +GLGE++LKVF EM S P++VT V LSACSY G V+EG +I+ESM+S +
Sbjct: 405 SGYASHGLGEEALKVFCEMPLSGSTKPNEVTFVATLSACSYAGMVEEGLKIYESMESVFG 464
Query: 360 VEPKTEHYACMVDLLGRAGQVEDAMKLIEAMPFEPDAIIWGSLLGACRTHMKLDLAEVAA 419
V+P T HYACMVD+LGRAG+ +AM++I++M EPDA +WGSLLGACRTH +LD+AE A
Sbjct: 465 VKPITAHYACMVDMLGRAGRFNEAMEMIDSMTVEPDAAVWGSLLGACRTHSQLDVAEFCA 524
Query: 420 KKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMRKRNVIKPPGCSWIEVEKKVHMF 479
KKL+++EP+N+G YILLSN+YASQGR+ DVAELRK M+ R V K PGCSW EVE KVH F
Sbjct: 525 KKLIEIEPENSGTYILLSNMYASQGRWADVAELRKLMKTRLVRKSPGCSWTEVENKVHAF 584
Query: 480 TGRDCVSHPEHPMIMRMLEKIGGLLREAGYCPDSSFVLHDVDEEEKVHSLRYHSEKLAVA 539
T SHPE I+++L+++ GLLREAGY PD S+ LHDVDEEEKV+SL+YHSE+LAVA
Sbjct: 585 TRGGINSHPEQESILKILDELDGLLREAGYNPDCSYALHDVDEEEKVNSLKYHSERLAVA 644
Query: 540 YGLVKLPEGVPIRVMKNLRVCGDCHSAIKLISKVMGREIILRDANRFHHFKDGLCSCRDY 599
Y L+KL EG+PIRVMKNLRVC DCH+AIK+ISKV REIILRDANRFHHF++G CSC+DY
Sbjct: 645 YALLKLSEGIPIRVMKNLRVCSDCHTAIKIISKVKEREIILRDANRFHHFRNGECSCKDY 704
Query: 600 W 600
W
Sbjct: 705 W 705
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|125543632|gb|EAY89771.1| hypothetical protein OsI_11313 [Oryza sativa Indica Group] | Back alignment and taxonomy information |
|---|
Score = 831 bits (2146), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 375/596 (62%), Positives = 476/596 (79%)
Query: 5 NVVSWTAMVRGYVEEGMITEAGTLFWQMPEKNVVSWTVMLGGFIRDSRIDDARRLFDMMP 64
+VVS+T+++RGYV G++ +A LF QMPE+N VS+TV+LGG + R+++ARRLFD MP
Sbjct: 111 SVVSFTSLLRGYVRHGLLADAIRLFQQMPERNHVSYTVLLGGLLDAGRVNEARRLFDEMP 170
Query: 65 EKDVVAQTNMVLGYCQDGRVDEGREIFDEMPKKNVISWTTMISGYVNNNRIDVARKLFEV 124
++DVVA T M+ GYCQ GR+ E R +FDEMPK+NV+SWT MISGY N +++ARKLFEV
Sbjct: 171 DRDVVAWTAMLSGYCQAGRITEARALFDEMPKRNVVSWTAMISGYAQNGEVNLARKLFEV 230
Query: 125 MPEKNEVSWTAMLMGYTQCGRIQDAWELFKAMPMKSVVASNSMILGLGQNGEVQKARVVF 184
MPE+NEVSWTAML+GY Q G ++DA ELF AMP V A N+M++G GQ G V A+ VF
Sbjct: 231 MPERNEVSWTAMLVGYIQAGHVEDAAELFNAMPEHPVAACNAMMVGFGQRGMVDAAKTVF 290
Query: 185 DQMREKDDATWSGMIKVYERKGYELEVIDLFTLMQKEGVRVNFPSLISVLSVCASLASLD 244
++MRE+DD TWS MIK YE+ + +E + F M GVR N+PS+IS+L+VCA+LA LD
Sbjct: 291 EKMRERDDGTWSAMIKAYEQNEFLMEALSTFREMLWRGVRPNYPSVISILTVCAALAVLD 350
Query: 245 HGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFASKDIVMWNSIISGYA 304
+GR+VHA ++RC FD+DV+ S LITMYIKCG L K K +F F KDIVMWNS+I+GYA
Sbjct: 351 YGREVHAAMLRCSFDMDVFAVSALITMYIKCGNLDKAKRVFHTFEPKDIVMWNSMITGYA 410
Query: 305 QYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKT 364
Q+GLGE++L +FH+M +G+ PD +T +G L+ACSYTGKVKEGREIF SM + P
Sbjct: 411 QHGLGEQALGIFHDMRLAGMSPDGITYIGALTACSYTGKVKEGREIFNSMTVNSSIRPGA 470
Query: 365 EHYACMVDLLGRAGQVEDAMKLIEAMPFEPDAIIWGSLLGACRTHMKLDLAEVAAKKLLQ 424
EHY+CMVDLLGR+G VE+A LI+ MP EPDA+IWG+L+GACR H ++AEVAAKKLL+
Sbjct: 471 EHYSCMVDLLGRSGLVEEAFDLIKNMPVEPDAVIWGALMGACRMHRNAEIAEVAAKKLLE 530
Query: 425 LEPKNAGPYILLSNIYASQGRFHDVAELRKNMRKRNVIKPPGCSWIEVEKKVHMFTGRDC 484
LEP NAGPY+LLS+IY S GR+ D +++RK + RN+ K PGCSWIE +K+VH+FT D
Sbjct: 531 LEPGNAGPYVLLSHIYTSVGRWEDASKMRKFISSRNLNKSPGCSWIEYDKRVHLFTSGDV 590
Query: 485 VSHPEHPMIMRMLEKIGGLLREAGYCPDSSFVLHDVDEEEKVHSLRYHSEKLAVAYGLVK 544
++HPEH I+R+LEK+ GLL E+GY D SFVLHD+DEE+K HSLRYHSE+ AVAYGL+K
Sbjct: 591 LAHPEHAAILRILEKLDGLLMESGYSADGSFVLHDIDEEQKSHSLRYHSERQAVAYGLLK 650
Query: 545 LPEGVPIRVMKNLRVCGDCHSAIKLISKVMGREIILRDANRFHHFKDGLCSCRDYW 600
+PEG+PIRVMKNLRVCGDCHSAIKLI+K+ REI+LRDANRFHHFKDG CSCRDYW
Sbjct: 651 IPEGMPIRVMKNLRVCGDCHSAIKLIAKITSREIVLRDANRFHHFKDGFCSCRDYW 706
|
Source: Oryza sativa Indica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 600 | ||||||
| TAIR|locus:2027554 | 704 | AT1G56690 [Arabidopsis thalian | 1.0 | 0.852 | 0.696 | 7.3e-233 | |
| TAIR|locus:2012295 | 705 | AT1G09410 [Arabidopsis thalian | 1.0 | 0.851 | 0.663 | 2.5e-223 | |
| TAIR|locus:2140235 | 781 | AT4G02750 [Arabidopsis thalian | 0.998 | 0.766 | 0.483 | 6.5e-161 | |
| TAIR|locus:2151501 | 697 | AT5G46460 [Arabidopsis thalian | 0.993 | 0.855 | 0.4 | 6.2e-117 | |
| TAIR|locus:2055919 | 786 | AT2G22070 "AT2G22070" [Arabido | 0.991 | 0.756 | 0.381 | 2.4e-115 | |
| TAIR|locus:2178188 | 995 | MEF7 "AT5G09950" [Arabidopsis | 0.881 | 0.531 | 0.396 | 9e-111 | |
| TAIR|locus:2060640 | 738 | OTP81 "ORGANELLE TRANSCRIPT PR | 0.911 | 0.741 | 0.399 | 4.8e-110 | |
| TAIR|locus:2131939 | 792 | MEF29 "AT4G30700" [Arabidopsis | 0.996 | 0.755 | 0.365 | 7.8e-110 | |
| TAIR|locus:2032955 | 790 | AT1G25360 "AT1G25360" [Arabido | 0.965 | 0.732 | 0.366 | 1.6e-109 | |
| TAIR|locus:2198546 | 760 | AT1G20230 "AT1G20230" [Arabido | 0.981 | 0.775 | 0.351 | 6.3e-108 |
| TAIR|locus:2027554 AT1G56690 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2246 (795.7 bits), Expect = 7.3e-233, P = 7.3e-233
Identities = 418/600 (69%), Positives = 493/600 (82%)
Query: 1 MPERNVVSWTAMVRGYVEEGMITEAGTLFWQMPEKNVVSWTVMLGGFIRDSRIDDARRLF 60
MPERNVVSWTAMV+GY++EGM+ EA +LFW+MPE+N VSWTVM GG I D RID AR+L+
Sbjct: 105 MPERNVVSWTAMVKGYMQEGMVGEAESLFWRMPERNEVSWTVMFGGLIDDGRIDKARKLY 164
Query: 61 DMMPEKDVVAQTNMVLGYCQDGRVDEGREIFDEMPKKNVISWTTMISGYVNNNRIDVARK 120
DMMP KDVVA TNM+ G C++GRVDE R IFDEM ++NV++WTTMI+GY NNR+DVARK
Sbjct: 165 DMMPVKDVVASTNMIGGLCREGRVDEARLIFDEMRERNVVTWTTMITGYRQNNRVDVARK 224
Query: 121 LFEVMPEKNEVSWTAMLMGYTQCGRIQDAWELFKAMPMKSVVASNSMILGLGQNGEVQKA 180
LFEVMPEK EVSWT+ML+GYT GRI+DA E F+ MPMK V+A N+MI+G G+ GE+ KA
Sbjct: 225 LFEVMPEKTEVSWTSMLLGYTLSGRIEDAEEFFEVMPMKPVIACNAMIVGFGEVGEISKA 284
Query: 181 RVVFDQMREKDDATWSGMIKVYERKGYELEVIDLFTLMQKEGVRVNFPXXXXXXXXXXXX 240
R VFD M ++D+ATW GMIK YERKG+ELE +DLF MQK+GVR +FP
Sbjct: 285 RRVFDLMEDRDNATWRGMIKAYERKGFELEALDLFAQMQKQGVRPSFPSLISILSVCATL 344
Query: 241 XXXDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFASKDIVMWNSII 300
+GRQVHA LVRCQFD DVYVASVL+TMY+KCGELVK KL+FD F+SKDI+MWNSII
Sbjct: 345 ASLQYGRQVHAHLVRCQFDDDVYVASVLMTMYVKCGELVKAKLVFDRFSSKDIIMWNSII 404
Query: 301 SGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLV 360
SGYA +GLGE++LK+FHEM SSG MP+ VTL+ +L+ACSY GK++EG EIFESM+SK+ V
Sbjct: 405 SGYASHGLGEEALKIFHEMPSSGTMPNKVTLIAILTACSYAGKLEEGLEIFESMESKFCV 464
Query: 361 EPKTEHYACMVDLLGRAGQVEDAMKLIEAMPFEPDAIIWGSLLGACRTHMKLDLAEVAAK 420
P EHY+C VD+LGRAGQV+ AM+LIE+M +PDA +WG+LLGAC+TH +LDLAEVAAK
Sbjct: 465 TPTVEHYSCTVDMLGRAGQVDKAMELIESMTIKPDATVWGALLGACKTHSRLDLAEVAAK 524
Query: 421 KLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMRKRNVIKPPGCSWIEVEKKVHMFT 480
KL + EP NAG Y+LLS+I AS+ ++ DVA +RKNMR NV K PGCSWIEV KKVHMFT
Sbjct: 525 KLFENEPDNAGTYVLLSSINASRSKWGDVAVVRKNMRTNNVSKFPGCSWIEVGKKVHMFT 584
Query: 481 GRDCVSHPEHPMIMRMLEKIGGLLREAGYCPDSSFVLHDVDEEEKVHSLRYHSEKLAVAY 540
+HPE MI+ MLEK GLLREAGY PD S VLHDVDEEEKV SL HSE+LAVAY
Sbjct: 585 RGGIKNHPEQAMILMMLEKTDGLLREAGYSPDCSHVLHDVDEEEKVDSLSRHSERLAVAY 644
Query: 541 GLVKLPEGVPIRVMKNLRVCGDCHSAIKLISKVMGREIILRDANRFHHFKDGLCSCRDYW 600
GL+KLPEGVPIRVMKNLRVCGDCH+AIKLISKV REIILRDANRFHHF +G CSCRDYW
Sbjct: 645 GLLKLPEGVPIRVMKNLRVCGDCHAAIKLISKVTEREIILRDANRFHHFNNGECSCRDYW 704
|
|
| TAIR|locus:2012295 AT1G09410 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2156 (764.0 bits), Expect = 2.5e-223, P = 2.5e-223
Identities = 399/601 (66%), Positives = 492/601 (81%)
Query: 1 MPERNVVSWTAMVRGYVEEGMITEAGTLFWQMPEKNVVSWTVMLGGFIRDSRIDDARRLF 60
MPERNVVSWTA+V+GYV G + A +LFW+MPEKN VSWTVML GF++D RIDDA +L+
Sbjct: 105 MPERNVVSWTALVKGYVHNGKVDVAESLFWKMPEKNKVSWTVMLIGFLQDGRIDDACKLY 164
Query: 61 DMMPEKDVVAQTNMVLGYCQDGRVDEGREIFDEMPKKNVISWTTMISGYVNNNRIDVARK 120
+M+P+KD +A+T+M+ G C++GRVDE REIFDEM +++VI+WTTM++GY NNR+D ARK
Sbjct: 165 EMIPDKDNIARTSMIHGLCKEGRVDEAREIFDEMSERSVITWTTMVTGYGQNNRVDDARK 224
Query: 121 LFEVMPEKNEVSWTAMLMGYTQCGRIQDAWELFKAMPMKSVVASNSMILGLGQNGEVQKA 180
+F+VMPEK EVSWT+MLMGY Q GRI+DA ELF+ MP+K V+A N+MI GLGQ GE+ KA
Sbjct: 225 IFDVMPEKTEVSWTSMLMGYVQNGRIEDAEELFEVMPVKPVIACNAMISGLGQKGEIAKA 284
Query: 181 RVVFDQMREKDDATWSGMIKVYERKGYELEVIDLFTLMQKEGVRVNFPXXXXXXXXXXXX 240
R VFD M+E++DA+W +IK++ER G+ELE +DLF LMQK+GVR FP
Sbjct: 285 RRVFDSMKERNDASWQTVIKIHERNGFELEALDLFILMQKQGVRPTFPTLISILSVCASL 344
Query: 241 XXXDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFASKDIVMWNSII 300
HG+QVHAQLVRCQFDVDVYVASVL+TMYIKCGELVK KLIFD F SKDI+MWNSII
Sbjct: 345 ASLHHGKQVHAQLVRCQFDVDVYVASVLMTMYIKCGELVKSKLIFDRFPSKDIIMWNSII 404
Query: 301 SGYAQYGLGEKSLKVFHEMFSSG-VMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYL 359
SGYA +GLGE++LKVF EM SG P++VT V LSACSY G V+EG +I+ESM+S +
Sbjct: 405 SGYASHGLGEEALKVFCEMPLSGSTKPNEVTFVATLSACSYAGMVEEGLKIYESMESVFG 464
Query: 360 VEPKTEHYACMVDLLGRAGQVEDAMKLIEAMPFEPDAIIWGSLLGACRTHMKLDLAEVAA 419
V+P T HYACMVD+LGRAG+ +AM++I++M EPDA +WGSLLGACRTH +LD+AE A
Sbjct: 465 VKPITAHYACMVDMLGRAGRFNEAMEMIDSMTVEPDAAVWGSLLGACRTHSQLDVAEFCA 524
Query: 420 KKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMRKRNVIKPPGCSWIEVEKKVHMF 479
KKL+++EP+N+G YILLSN+YASQGR+ DVAELRK M+ R V K PGCSW EVE KVH F
Sbjct: 525 KKLIEIEPENSGTYILLSNMYASQGRWADVAELRKLMKTRLVRKSPGCSWTEVENKVHAF 584
Query: 480 TGRDCVSHPEHPMIMRMLEKIGGLLREAGYCPDSSFVLHDVDEEEKVHSLRYHSEKLAVA 539
T SHPE I+++L+++ GLLREAGY PD S+ LHDVDEEEKV+SL+YHSE+LAVA
Sbjct: 585 TRGGINSHPEQESILKILDELDGLLREAGYNPDCSYALHDVDEEEKVNSLKYHSERLAVA 644
Query: 540 YGLVKLPEGVPIRVMKNLRVCGDCHSAIKLISKVMGREIILRDANRFHHFKDGLCSCRDY 599
Y L+KL EG+PIRVMKNLRVC DCH+AIK+ISKV REIILRDANRFHHF++G CSC+DY
Sbjct: 645 YALLKLSEGIPIRVMKNLRVCSDCHTAIKIISKVKEREIILRDANRFHHFRNGECSCKDY 704
Query: 600 W 600
W
Sbjct: 705 W 705
|
|
| TAIR|locus:2140235 AT4G02750 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1567 (556.7 bits), Expect = 6.5e-161, P = 6.5e-161
Identities = 290/600 (48%), Positives = 406/600 (67%)
Query: 1 MPERNVVSWTAMVRGYVEEGMITEAGTLFWQMPEKNVVSWTVMLGGFIRDSRIDDARRLF 60
MPE+N VSW A++ YV+ + EA LF +VSW +LGGF++ +I +AR+ F
Sbjct: 183 MPEKNDVSWNALLSAYVQNSKMEEACMLFKSRENWALVSWNCLLGGFVKKKKIVEARQFF 242
Query: 61 DMMPEKDVVAQTNMVLGYCQDGRVDEGREIFDEMPKKNVISWTTMISGYVNNNRIDVARK 120
D M +DVV+ ++ GY Q G++DE R++FDE P ++V +WT M+SGY+ N ++ AR+
Sbjct: 243 DSMNVRDVVSWNTIITGYAQSGKIDEARQLFDESPVQDVFTWTAMVSGYIQNRMVEEARE 302
Query: 121 LFEVMPEKNEVSWTAMLMGYTQCGRIQDAWELFKAMPMKSVVASNSMILGLGQNGEVQKA 180
LF+ MPE+NEVSW AML GY Q R++ A ELF MP ++V N+MI G Q G++ +A
Sbjct: 303 LFDKMPERNEVSWNAMLAGYVQGERMEMAKELFDVMPCRNVSTWNTMITGYAQCGKISEA 362
Query: 181 RVVFDQMREKDDATWSGMIKVYERKGYELEVIDLFTLMQKEGVRVNFPXXXXXXXXXXXX 240
+ +FD+M ++D +W+ MI Y + G+ E + LF M++EG R+N
Sbjct: 363 KNLFDKMPKRDPVSWAAMIAGYSQSGHSFEALRLFVQMEREGGRLNRSSFSSALSTCADV 422
Query: 241 XXXDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFASKDIVMWNSII 300
+ G+Q+H +LV+ ++ +V + L+ MY KCG + + +F A KDIV WN++I
Sbjct: 423 VALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDLFKEMAGKDIVSWNTMI 482
Query: 301 SGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLV 360
+GY+++G GE +L+ F M G+ PDD T+V VLSACS+TG V +GR+ F +M Y V
Sbjct: 483 AGYSRHGFGEVALRFFESMKREGLKPDDATMVAVLSACSHTGLVDKGRQYFYTMTQDYGV 542
Query: 361 EPKTEHYACMVDLLGRAGQVEDAMKLIEAMPFEPDAIIWGSLLGACRTHMKLDLAEVAAK 420
P ++HYACMVDLLGRAG +EDA L++ MPFEPDA IWG+LLGA R H +LAE AA
Sbjct: 543 MPNSQHYACMVDLLGRAGLLEDAHNLMKNMPFEPDAAIWGTLLGASRVHGNTELAETAAD 602
Query: 421 KLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMRKRNVIKPPGCSWIEVEKKVHMFT 480
K+ +EP+N+G Y+LLSN+YAS GR+ DV +LR MR + V K PG SWIE++ K H F+
Sbjct: 603 KIFAMEPENSGMYVLLSNLYASSGRWGDVGKLRVRMRDKGVKKVPGYSWIEIQNKTHTFS 662
Query: 481 GRDCVSHPEHPMIMRMLEKIGGLLREAGYCPDSSFVLHDVDEEEKVHSLRYHSEKLAVAY 540
D HPE I LE++ +++AGY +S VLHDV+EEEK +RYHSE+LAVAY
Sbjct: 663 VGD-EFHPEKDEIFAFLEELDLRMKKAGYVSKTSVVLHDVEEEEKERMVRYHSERLAVAY 721
Query: 541 GLVKLPEGVPIRVMKNLRVCGDCHSAIKLISKVMGREIILRDANRFHHFKDGLCSCRDYW 600
G++++ G PIRV+KNLRVC DCH+AIK ++++ GR IILRD NRFHHFKDG CSC DYW
Sbjct: 722 GIMRVSSGRPIRVIKNLRVCEDCHNAIKYMARITGRLIILRDNNRFHHFKDGSCSCGDYW 781
|
|
| TAIR|locus:2151501 AT5G46460 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1152 (410.6 bits), Expect = 6.2e-117, P = 6.2e-117
Identities = 244/610 (40%), Positives = 349/610 (57%)
Query: 1 MPERNVVSWTAMVRGYVEEGMITEAGTLFWQMPEKNVVSWTVMLGGFIRDSRIDDARRLF 60
MP R+VVSW +M+ G VE G + A LF +MPE++VVSWT M+ G R ++D A RLF
Sbjct: 92 MPVRDVVSWNSMISGCVECGDMNTAVKLFDEMPERSVVSWTAMVNGCFRSGKVDQAERLF 151
Query: 61 DMMPEKDVVAQTNMVLGYCQDGRVDEGREIFDEMPKKNVISWTTMISGYVNNNRIDVARK 120
MP KD A +MV GY Q G+VD+ ++F +MP KNVISWTTMI G N R A
Sbjct: 152 YQMPVKDTAAWNSMVHGYLQFGKVDDALKLFKQMPGKNVISWTTMICGLDQNERSGEALD 211
Query: 121 LFEVMP----EKNEVSWTAMLMGYTQCGR----IQDAWELFKAMPMKSVVASNSMILGLG 172
LF+ M + +T ++ IQ + K + S S+I
Sbjct: 212 LFKNMLRCCIKSTSRPFTCVITACANAPAFHMGIQVHGLIIKLGFLYEEYVSASLITFYA 271
Query: 173 QNGEVQKARVVFDQMREKDDATWSGMIKVYE-RKGYELEVIDLFTLMQKEGVRVNFPXXX 231
+ +R VFD+ + A W+ ++ Y K +E + + +F+ M + + N
Sbjct: 272 NCKRIGDSRKVFDEKVHEQVAVWTALLSGYSLNKKHE-DALSIFSGMLRNSILPNQSTFA 330
Query: 232 XXXXXXXXXXXXDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFASK 291
D G+++H V+ + D +V + L+ MY G + +F K
Sbjct: 331 SGLNSCSALGTLDWGKEMHGVAVKLGLETDAFVGNSLVVMYSDSGNVNDAVSVFIKIFKK 390
Query: 292 DIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIF 351
IV WNSII G AQ+G G+ + +F +M PD++T G+LSACS+ G +++GR++F
Sbjct: 391 SIVSWNSIIVGCAQHGRGKWAFVIFGQMIRLNKEPDEITFTGLLSACSHCGFLEKGRKLF 450
Query: 352 ESMKSKYL-VEPKTEHYACMVDLLGRAGQVEDAMKLIEAMPFEPDAIIWGSLLGACRTHM 410
M S ++ K +HY CMVD+LGR G++++A +LIE M +P+ ++W +LL ACR H
Sbjct: 451 YYMSSGINHIDRKIQHYTCMVDILGRCGKLKEAEELIERMVVKPNEMVWLALLSACRMHS 510
Query: 411 KLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMRKRNVIKPPGCSWI 470
+D E AA + L+ K++ Y+LLSNIYAS GR+ +V++LR M+K ++K PG SW+
Sbjct: 511 DVDRGEKAAAAIFNLDSKSSAAYVLLSNIYASAGRWSNVSKLRVKMKKNGIMKKPGSSWV 570
Query: 471 EVEKKVHMFTGRDCVSHPEHPMIMRMLEKIGGLLREAGYCPDSSFVLHDVDEEEKVHSLR 530
+ K H F D P I LE + L+E GY PD LHDV++E+K L
Sbjct: 571 VIRGKKHEFFSGD---QPHCSRIYEKLEFLREKLKELGYAPDYRSALHDVEDEQKEEMLW 627
Query: 531 YHSEKLAVAYGLVKLPEGVPIRVMKNLRVCGDCHSAIKLISKVMGREIILRDANRFHHFK 590
YHSE+LA+A+GL+ EG + VMKNLRVC DCH+ IKLIS V+GREI+LRD RFHHFK
Sbjct: 628 YHSERLAIAFGLINTVEGSAVTVMKNLRVCEDCHTVIKLISGVVGREIVLRDPIRFHHFK 687
Query: 591 DGLCSCRDYW 600
+G CSC DYW
Sbjct: 688 NGTCSCGDYW 697
|
|
| TAIR|locus:2055919 AT2G22070 "AT2G22070" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1137 (405.3 bits), Expect = 2.4e-115, P = 2.4e-115
Identities = 232/608 (38%), Positives = 363/608 (59%)
Query: 5 NVVSWTAMVRGYVEEGMITEAGTLFWQMPEKNVVSWTVMLGGFIRDSRIDDARRLFDMMP 64
NV +++ Y + G A +F +M +++ SW M+ ++ ++D A F+ M
Sbjct: 180 NVSVSNSLLNMYAKCGDPMMAKFVFDRMVVRDISSWNAMIALHMQVGQMDLAMAQFEQMA 239
Query: 65 EKDVVAQTNMVLGYCQDGRVDEGREIFDEMPKKNVIS---WT--TMISGYVNNNRIDVAR 119
E+D+V +M+ G+ Q G +IF +M + +++S +T +++S N ++ + +
Sbjct: 240 ERDIVTWNSMISGFNQRGYDLRALDIFSKMLRDSLLSPDRFTLASVLSACANLEKLCIGK 299
Query: 120 KLFE-VMPEKNEVSW---TAMLMGYTQCGRIQDAWELFKAMPMKS--VVASNSMILGLGQ 173
++ ++ ++S A++ Y++CG ++ A L + K + +++ G +
Sbjct: 300 QIHSHIVTTGFDISGIVLNALISMYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIK 359
Query: 174 NGEVQKARVVFDQMREKDDATWSGMIKVYERKGYELEVIDLFTLMQKEGVRVNFPXXXXX 233
G++ +A+ +F ++++D W+ MI YE+ G E I+LF M G R N
Sbjct: 360 LGDMNQAKNIFVSLKDRDVVAWTAMIVGYEQHGSYGEAINLFRSMVGGGQRPNSYTLAAM 419
Query: 234 XXXXXXXXXXDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNF-ASKD 292
HG+Q+H V+ V V++ LITMY K G + FD +D
Sbjct: 420 LSVASSLASLSHGKQIHGSAVKSGEIYSVSVSNALITMYAKAGNITSASRAFDLIRCERD 479
Query: 293 IVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFE 352
V W S+I AQ+G E++L++F M G+ PD +T VGV SAC++ G V +GR+ F+
Sbjct: 480 TVSWTSMIIALAQHGHAEEALELFETMLMEGLRPDHITYVGVFSACTHAGLVNQGRQYFD 539
Query: 353 SMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAMPFEPDAIIWGSLLGACRTHMKL 412
MK + P HYACMVDL GRAG +++A + IE MP EPD + WGSLL ACR H +
Sbjct: 540 MMKDVDKIIPTLSHYACMVDLFGRAGLLQEAQEFIEKMPIEPDVVTWGSLLSACRVHKNI 599
Query: 413 DLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMRKRNVIKPPGCSWIEV 472
DL +VAA++LL LEP+N+G Y L+N+Y++ G++ + A++RK+M+ V K G SWIEV
Sbjct: 600 DLGKVAAERLLLLEPENSGAYSALANLYSACGKWEEAAKIRKSMKDGRVKKEQGFSWIEV 659
Query: 473 EKKVHMFTGRDCVSHPEHPMIMRMLEKIGGLLREAGYCPDSSFVLHDVDEEEKVHSLRYH 532
+ KVH+F G + +HPE I ++KI +++ GY PD++ VLHD++EE K LR+H
Sbjct: 660 KHKVHVF-GVEDGTHPEKNEIYMTMKKIWDEIKKMGYVPDTASVLHDLEEEVKEQILRHH 718
Query: 533 SEKLAVAYGLVKLPEGVPIRVMKNLRVCGDCHSAIKLISKVMGREIILRDANRFHHFKDG 592
SEKLA+A+GL+ P+ +R+MKNLRVC DCH+AIK ISK++GREII+RD RFHHFKDG
Sbjct: 719 SEKLAIAFGLISTPDKTTLRIMKNLRVCNDCHTAIKFISKLVGREIIVRDTTRFHHFKDG 778
Query: 593 LCSCRDYW 600
CSCRDYW
Sbjct: 779 FCSCRDYW 786
|
|
| TAIR|locus:2178188 MEF7 "AT5G09950" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1023 (365.2 bits), Expect = 9.0e-111, Sum P(2) = 9.0e-111
Identities = 217/547 (39%), Positives = 326/547 (59%)
Query: 69 VAQTNMVLGYCQDGRVDEGREIFDEMPKKNVISWTTMISGYVNNNR-IDVARKLF---EV 124
V+ M L Y + G ++E R+IF MP+ + +SW ++I + R + A F +
Sbjct: 452 VSNALMTL-YAETGYLNECRKIFSSMPEHDQVSWNSIIGALARSERSLPEAVVCFLNAQR 510
Query: 125 MPEK-NEVSWTAMLMGYTQCGRIQDAWELFKAMPMKSVVAS-----NSMILGLGQNGEVQ 178
+K N ++++++L + + + + +K+ +A N++I G+ GE+
Sbjct: 511 AGQKLNRITFSSVLSAVSSLS-FGELGKQIHGLALKNNIADEATTENALIACYGKCGEMD 569
Query: 179 KARVVFDQMREK-DDATWSGMIKVYERKGYELEVIDLFTLMQKEGVRVNFPXXXXXXXXX 237
+F +M E+ D+ TW+ MI Y + +DL M + G R++
Sbjct: 570 GCEKIFSRMAERRDNVTWNSMISGYIHNELLAKALDLVWFMLQTGQRLDSFMYATVLSAF 629
Query: 238 XXXXXXDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFASKDIVMWN 297
+ G +VHA VR + DV V S L+ MY KCG L F+ ++ WN
Sbjct: 630 ASVATLERGMEVHACSVRACLESDVVVGSALVDMYSKCGRLDYALRFFNTMPVRNSYSWN 689
Query: 298 SIISGYAQYGLGEKSLKVFHEMFSSG-VMPDDVTLVGVLSACSYTGKVKEGREIFESMKS 356
S+ISGYA++G GE++LK+F M G PD VT VGVLSACS+ G ++EG + FESM
Sbjct: 690 SMISGYARHGQGEEALKLFETMKLDGQTPPDHVTFVGVLSACSHAGLLEEGFKHFESMSD 749
Query: 357 KYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAMPFEPDAIIWGSLLGAC-RTH-MKLDL 414
Y + P+ EH++CM D+LGRAG+++ IE MP +P+ +IW ++LGAC R + K +L
Sbjct: 750 SYGLAPRIEHFSCMADVLGRAGELDKLEDFIEKMPMKPNVLIWRTVLGACCRANGRKAEL 809
Query: 415 AEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMRKRNVIKPPGCSWIEVEK 474
+ AA+ L QLEP+NA Y+LL N+YA+ GR+ D+ + RK M+ +V K G SW+ ++
Sbjct: 810 GKKAAEMLFQLEPENAVNYVLLGNMYAAGGRWEDLVKARKKMKDADVKKEAGYSWVTMKD 869
Query: 475 KVHMFTGRDCVSHPEHPMIMRMLEKIGGLLREAGYCPDSSFVLHDVDEEEKVHSLRYHSE 534
VHMF D SHP+ +I + L+++ +R+AGY P + F L+D+++E K L YHSE
Sbjct: 870 GVHMFVAGD-KSHPDADVIYKKLKELNRKMRDAGYVPQTGFALYDLEQENKEEILSYHSE 928
Query: 535 KLAVAYGLV-KLPEGVPIRVMKNLRVCGDCHSAIKLISKVMGREIILRDANRFHHFKDGL 593
KLAVA+ L + +PIR+MKNLRVCGDCHSA K ISK+ GR+IILRD+NRFHHF+DG
Sbjct: 929 KLAVAFVLAAQRSSTLPIRIMKNLRVCGDCHSAFKYISKIEGRQIILRDSNRFHHFQDGA 988
Query: 594 CSCRDYW 600
CSC D+W
Sbjct: 989 CSCSDFW 995
|
|
| TAIR|locus:2060640 OTP81 "ORGANELLE TRANSCRIPT PROCESSING 81" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1087 (387.7 bits), Expect = 4.8e-110, P = 4.8e-110
Identities = 223/558 (39%), Positives = 338/558 (60%)
Query: 53 IDDARRLFDMMPEKDVVAQTNMVLGYCQDGRVDEGREIFDEMPKKNV-ISWTTMI---SG 108
+D A ++F + EKDVV+ +M+ G+ Q G D+ E+F +M ++V S TM+ S
Sbjct: 182 LDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSA 241
Query: 109 YVNNNRIDVARKLFEVMPEKN-EVSWT---AMLMGYTQCGRIQDAWELFKAMPMKSVVAS 164
++ R++ + E V+ T AML YT+CG I+DA LF AM K V
Sbjct: 242 CAKIRNLEFGRQVCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTW 301
Query: 165 NSMILGLGQNGEVQKARVVFDQMREKDDATWSGMIKVYERKGYELEVIDLFTLMQ-KEGV 223
+M+ G + + + AR V + M +KD W+ +I YE+ G E + +F +Q ++ +
Sbjct: 302 TTMLDGYAISEDYEAAREVLNSMPQKDIVAWNALISAYEQNGKPNEALIVFHELQLQKNM 361
Query: 224 RVNFPXXXXXXXXXXXXXXXDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKL 283
++N + GR +H+ + + ++ +V S LI MY KCG+L K +
Sbjct: 362 KLNQITLVSTLSACAQVGALELGRWIHSYIKKHGIRMNFHVTSALIHMYSKCGDLEKSRE 421
Query: 284 IFDNFASKDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGK 343
+F++ +D+ +W+++I G A +G G +++ +F++M + V P+ VT V ACS+TG
Sbjct: 422 VFNSVEKRDVFVWSAMIGGLAMHGCGNEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGL 481
Query: 344 VKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAMPFEPDAIIWGSLL 403
V E +F M+S Y + P+ +HYAC+VD+LGR+G +E A+K IEAMP P +WG+LL
Sbjct: 482 VDEAESLFHQMESNYGIVPEEKHYACIVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGALL 541
Query: 404 GACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMRKRNVIK 463
GAC+ H L+LAE+A +LL+LEP+N G ++LLSNIYA G++ +V+ELRK+MR + K
Sbjct: 542 GACKIHANLNLAEMACTRLLELEPRNDGAHVLLSNIYAKLGKWENVSELRKHMRVTGLKK 601
Query: 464 PPGCSWIEVEKKVHMFTGRDCVSHPEHPMIMRMLEKIGGLLREAGYCPDSSFVLHDVDEE 523
PGCS IE++ +H F D +HP + L ++ L+ GY P+ S VL ++EE
Sbjct: 602 EPGCSSIEIDGMIHEFLSGDN-AHPMSEKVYGKLHEVMEKLKSNGYEPEISQVLQIIEEE 660
Query: 524 E-KVHSLRYHSEKLAVAYGLVKLPEGVPIRVMKNLRVCGDCHSAIKLISKVMGREIILRD 582
E K SL HSEKLA+ YGL+ IRV+KNLRVCGDCHS KLIS++ REII+RD
Sbjct: 661 EMKEQSLNLHSEKLAICYGLISTEAPKVIRVIKNLRVCGDCHSVAKLISQLYDREIIVRD 720
Query: 583 ANRFHHFKDGLCSCRDYW 600
RFHHF++G CSC D+W
Sbjct: 721 RYRFHHFRNGQCSCNDFW 738
|
|
| TAIR|locus:2131939 MEF29 "AT4G30700" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1085 (387.0 bits), Expect = 7.8e-110, P = 7.8e-110
Identities = 225/615 (36%), Positives = 352/615 (57%)
Query: 1 MPERNVVSWTAMVRGYVEEGMITEAGTLFWQMPEKNV--VSWTVMLGGFIRDSRIDDAR- 57
MPE++ + W M+ GY + M E+ +F + ++ + T +L + + + R
Sbjct: 180 MPEKDTILWNTMISGYRKNEMYVESIQVFRDLINESCTRLDTTTLLDILPAVAELQELRL 239
Query: 58 --RLFDMMPEKDVVAQTNMVLG----YCQDGRVDEGREIFDEMPKKNVISWTTMISGYVN 111
++ + + + ++ G Y + G++ G +F E K +++++ MI GY +
Sbjct: 240 GMQIHSLATKTGCYSHDYVLTGFISLYSKCGKIKMGSALFREFRKPDIVAYNAMIHGYTS 299
Query: 112 NNRIDVARKLF-EVMPEKNEVSWTAMLMGYTQCGRIQDAWEL----FKAMPMKSVVASNS 166
N +++ LF E+M + + ++ G + + + K+ + S +
Sbjct: 300 NGETELSLSLFKELMLSGARLRSSTLVSLVPVSGHLMLIYAIHGYCLKSNFLSHASVSTA 359
Query: 167 MILGLGQNGEVQKARVVFDQMREKDDATWSGMIKVYERKGYELEVIDLFTLMQKEGVRVN 226
+ + E++ AR +FD+ EK +W+ MI Y + G + I LF MQK N
Sbjct: 360 LTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQKSEFSPN 419
Query: 227 FPXXXXXXXXXXXXXXXDHGRQVHAQLVRC-QFDVDVYVASVLITMYIKCGELVKGKLIF 285
G+ VH LVR F+ +YV++ LI MY KCG + + + +F
Sbjct: 420 PVTITCILSACAQLGALSLGKWVH-DLVRSTDFESSIYVSTALIGMYAKCGSIAEARRLF 478
Query: 286 DNFASKDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVK 345
D K+ V WN++ISGY +G G+++L +F+EM +SG+ P VT + VL ACS+ G VK
Sbjct: 479 DLMTKKNEVTWNTMISGYGLHGQGQEALNIFYEMLNSGITPTPVTFLCVLYACSHAGLVK 538
Query: 346 EGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAMPFEPDAIIWGSLLGA 405
EG EIF SM +Y EP +HYACMVD+LGRAG ++ A++ IEAM EP + +W +LLGA
Sbjct: 539 EGDEIFNSMIHRYGFEPSVKHYACMVDILGRAGHLQRALQFIEAMSIEPGSSVWETLLGA 598
Query: 406 CRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMRKRNVIKPP 465
CR H +LA ++KL +L+P N G ++LLSNI+++ + A +R+ +KR + K P
Sbjct: 599 CRIHKDTNLARTVSEKLFELDPDNVGYHVLLSNIHSADRNYPQAATVRQTAKKRKLAKAP 658
Query: 466 GCSWIEVEKKVHMFTGRDCVSHPEHPMIMRMLEKIGGLLREAGYCPDSSFVLHDVDEEEK 525
G + IE+ + H+FT D SHP+ I LEK+ G +REAGY P++ LHDV+EEE+
Sbjct: 659 GYTLIEIGETPHVFTSGD-QSHPQVKEIYEKLEKLEGKMREAGYQPETELALHDVEEEER 717
Query: 526 VHSLRYHSEKLAVAYGLVKLPEGVPIRVMKNLRVCGDCHSAIKLISKVMGREIILRDANR 585
++ HSE+LA+A+GL+ G IR++KNLRVC DCH+ KLISK+ R I++RDANR
Sbjct: 718 ELMVKVHSERLAIAFGLIATEPGTEIRIIKNLRVCLDCHTVTKLISKITERVIVVRDANR 777
Query: 586 FHHFKDGLCSCRDYW 600
FHHFKDG+CSC DYW
Sbjct: 778 FHHFKDGVCSCGDYW 792
|
|
| TAIR|locus:2032955 AT1G25360 "AT1G25360" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1082 (385.9 bits), Expect = 1.6e-109, P = 1.6e-109
Identities = 216/589 (36%), Positives = 348/589 (59%)
Query: 21 MITEAGTLFWQMPEKNVVSWTVMLGGFIRDSRIDDARRLFDMMPEK-DVVAQTNMVLGYC 79
++ A +F ++ EK+ SWT M+ G++++ D L + M + +VA M+ GY
Sbjct: 203 LLHSARKVFDEILEKDERSWTTMMTGYVKNGYFDLGEELLEGMDDNMKLVAYNAMISGYV 262
Query: 80 QDGRVDEGREIFDEMPKKNV----ISWTTMISGYVNNNRIDVARKLFEVMPEKNEVSW-- 133
G E E+ M + ++ ++I + + +++ + + + S+
Sbjct: 263 NRGFYQEALEMVRRMVSSGIELDEFTYPSVIRACATAGLLQLGKQVHAYVLRREDFSFHF 322
Query: 134 -TAMLMGYTQCGRIQDAWELFKAMPMKSVVASNSMILGLGQNGEVQKARVVFDQMREKDD 192
+++ Y +CG+ +A +F+ MP K +V+ N+++ G +G + +A+++F +M+EK+
Sbjct: 323 DNSLVSLYYKCGKFDEARAIFEKMPAKDLVSWNALLSGYVSSGHIGEAKLIFKEMKEKNI 382
Query: 193 ATWSGMIKVYERKGYELEVIDLFTLMQKEGVRVNFPXXXXXXXXXXXXXXXDHGRQVHAQ 252
+W MI G+ E + LF+ M++EG +G+Q HAQ
Sbjct: 383 LSWMIMISGLAENGFGEEGLKLFSCMKREGFEPCDYAFSGAIKSCAVLGAYCNGQQYHAQ 442
Query: 253 LVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFASKDIVMWNSIISGYAQYGLGEKS 312
L++ FD + + LITMY KCG + + + +F D V WN++I+ Q+G G ++
Sbjct: 443 LLKIGFDSSLSAGNALITMYAKCGVVEEARQVFRTMPCLDSVSWNALIAALGQHGHGAEA 502
Query: 313 LKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVD 372
+ V+ EM G+ PD +TL+ VL+ACS+ G V +GR+ F+SM++ Y + P +HYA ++D
Sbjct: 503 VDVYEEMLKKGIRPDRITLLTVLTACSHAGLVDQGRKYFDSMETVYRIPPGADHYARLID 562
Query: 373 LLGRAGQVEDAMKLIEAMPFEPDAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGP 432
LL R+G+ DA +IE++PF+P A IW +LL CR H ++L +AA KL L P++ G
Sbjct: 563 LLCRSGKFSDAESVIESLPFKPTAEIWEALLSGCRVHGNMELGIIAADKLFGLIPEHDGT 622
Query: 433 YILLSNIYASQGRFHDVAELRKNMRKRNVIKPPGCSWIEVEKKVHMFTGRDCVSHPEHPM 492
Y+LLSN++A+ G++ +VA +RK MR R V K CSWIE+E +VH F D SHPE
Sbjct: 623 YMLLSNMHAATGQWEEVARVRKLMRDRGVKKEVACSWIEMETQVHTFLVDD-TSHPEAEA 681
Query: 493 IMRMLEKIGGLLREAGYCPDSSFVLHDVDEE-EKVHSLRYHSEKLAVAYGLVKLPEGVPI 551
+ L+ +G +R GY PD+SFVLHDV+ + K L HSEK+AVA+GL+KLP G I
Sbjct: 682 VYIYLQDLGKEMRRLGYVPDTSFVLHDVESDGHKEDMLTTHSEKIAVAFGLMKLPPGTTI 741
Query: 552 RVMKNLRVCGDCHSAIKLISKVMGREIILRDANRFHHFKDGLCSCRDYW 600
R+ KNLR CGDCH+ + +S V+ R+IILRD RFHHF++G CSC ++W
Sbjct: 742 RIFKNLRTCGDCHNFFRFLSWVVQRDIILRDRKRFHHFRNGECSCGNFW 790
|
|
| TAIR|locus:2198546 AT1G20230 "AT1G20230" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1067 (380.7 bits), Expect = 6.3e-108, P = 6.3e-108
Identities = 213/606 (35%), Positives = 357/606 (58%)
Query: 11 AMVRGYVEEGMITEAGTLFWQMPEKNVVSWTVMLGGFIRDSRIDDARRLFDMMP----EK 66
+M Y+ G + +A +F +M +K+VV+ + +L + R +++ R+ M E
Sbjct: 156 SMFHMYMRCGRMGDARKVFDRMSDKDVVTCSALLCAYARKGCLEEVVRILSEMESSGIEA 215
Query: 67 DVVAQTNMVLGYCQDGRVDEGREIFDEMPK----KNVISWTTMISGYVNNNRIDVARKLF 122
++V+ ++ G+ + G E +F ++ + ++ ++++ ++ +++ R +
Sbjct: 216 NIVSWNGILSGFNRSGYHKEAVVMFQKIHHLGFCPDQVTVSSVLPSVGDSEMLNMGRLIH 275
Query: 123 E-VMPE---KNEVSWTAMLMGYTQCGRIQDAWELFKAMPMKSVVASNSMILGLGQNGEVQ 178
V+ + K++ +AM+ Y + G + LF M N+ I GL +NG V
Sbjct: 276 GYVIKQGLLKDKCVISAMIDMYGKSGHVYGIISLFNQFEMMEAGVCNAYITGLSRNGLVD 335
Query: 179 KARVVFDQMREK----DDATWSGMIKVYERKGYELEVIDLFTLMQKEGVRVNFPXXXXXX 234
KA +F+ +E+ + +W+ +I + G ++E ++LF MQ GV+ N
Sbjct: 336 KALEMFELFKEQTMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNHVTIPSML 395
Query: 235 XXXXXXXXXDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFASKDIV 294
HGR H VR +V+V S LI MY KCG + +++F+ +K++V
Sbjct: 396 PACGNIAALGHGRSTHGFAVRVHLLDNVHVGSALIDMYAKCGRINLSQIVFNMMPTKNLV 455
Query: 295 MWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESM 354
WNS+++G++ +G ++ + +F + + + PD ++ +LSAC G EG + F+ M
Sbjct: 456 CWNSLMNGFSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEGWKYFKMM 515
Query: 355 KSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAMPFEPDAIIWGSLLGACRTHMKLDL 414
+Y ++P+ EHY+CMV+LLGRAG++++A LI+ MPFEPD+ +WG+LL +CR +DL
Sbjct: 516 SEEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEMPFEPDSCVWGALLNSCRLQNNVDL 575
Query: 415 AEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMRKRNVIKPPGCSWIEVEK 474
AE+AA+KL LEP+N G Y+LLSNIYA++G + +V +R M + K PGCSWI+V+
Sbjct: 576 AEIAAEKLFHLEPENPGTYVLLSNIYAAKGMWTEVDSIRNKMESLGLKKNPGCSWIQVKN 635
Query: 475 KVHMFTGRDCVSHPEHPMIMRMLEKIGGLLREAGYCPDSSFVLHDVDEEEKVHSLRYHSE 534
+V+ D SHP+ I +++I +R++G+ P+ F LHDV+E+E+ L HSE
Sbjct: 636 RVYTLLAGD-KSHPQIDQITEKMDEISKEMRKSGHRPNLDFALHDVEEQEQEQMLWGHSE 694
Query: 535 KLAVAYGLVKLPEGVPIRVMKNLRVCGDCHSAIKLISKVMGREIILRDANRFHHFKDGLC 594
KLAV +GL+ P+G P++V+KNLR+CGDCH+ IK IS GREI +RD NRFHHFKDG+C
Sbjct: 695 KLAVVFGLLNTPDGTPLQVIKNLRICGDCHAVIKFISSYAGREIFIRDTNRFHHFKDGIC 754
Query: 595 SCRDYW 600
SC D+W
Sbjct: 755 SCGDFW 760
|
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9FXB9 | PPR84_ARATH | No assigned EC number | 0.7183 | 0.965 | 0.8224 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | GSVIVG00022551001 | SubName- Full=Chromosome chr14 scaffold_27, whole genome shotgun sequence; (673 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 600 | |||
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-147 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-146 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 6e-45 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-37 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 3e-37 | |
| pfam14432 | 116 | pfam14432, DYW_deaminase, DYW family of nucleic ac | 8e-25 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 2e-15 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-12 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 2e-10 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-08 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-08 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 5e-08 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 7e-08 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-06 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-05 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 4e-05 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 5e-05 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 2e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 2e-04 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 3e-04 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-04 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 3e-04 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 9e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.001 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 0.001 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.003 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 440 bits (1134), Expect = e-147
Identities = 197/544 (36%), Positives = 319/544 (58%), Gaps = 9/544 (1%)
Query: 65 EKDVVAQTNMVLGYCQDGRVDEGREIFDEMPKKNVISWTTMISGYVNNNRIDVARKLFEV 124
E D ++L + + G + + R +FDEMP++N+ SW T+I G V+ A LF
Sbjct: 155 EPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFRE 214
Query: 125 MPEKNEV----SWTAMLMGYTQCGRIQDAWEL----FKAMPMKSVVASNSMILGLGQNGE 176
M E ++ ML G + +L K + S ++I + G+
Sbjct: 215 MWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGD 274
Query: 177 VQKARVVFDQMREKDDATWSGMIKVYERKGYELEVIDLFTLMQKEGVRVNFPSLISVLSV 236
++ AR VFD M EK W+ M+ Y GY E + L+ M+ GV ++ + ++ +
Sbjct: 275 IEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRI 334
Query: 237 CASLASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFASKDIVMW 296
+ LA L+H +Q HA L+R F +D+ + L+ +Y K G + + +FD K+++ W
Sbjct: 335 FSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISW 394
Query: 297 NSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKS 356
N++I+GY +G G K++++F M + GV P+ VT + VLSAC Y+G ++G EIF+SM
Sbjct: 395 NALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSE 454
Query: 357 KYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAMPFEPDAIIWGSLLGACRTHMKLDLAE 416
+ ++P+ HYACM++LLGR G +++A +I PF+P +W +LL ACR H L+L
Sbjct: 455 NHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGR 514
Query: 417 VAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMRKRNVIKPPGCSWIEVEKKV 476
+AA+KL + P+ Y++L N+Y S GR + A++ + ++++ + P C+WIEV+K+
Sbjct: 515 LAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQD 574
Query: 477 HMFTGRDCVSHPEHPMIMRMLEKIGGLLREAGYCPDSSFVLHDVDEEEKVHSLRYHSEKL 536
H F D + HP+ I + L+++ + E GY + + +L DVDE+E+ S RYHSEKL
Sbjct: 575 HSFFSGDRL-HPQSREIYQKLDELMKEISEYGYVAEENELLPDVDEDEEKVSGRYHSEKL 633
Query: 537 AVAYGLVKLPEGVPIRVMKNLRVCGDCHSAIKLISKVMGREIILRDANRFHHFKDGLCSC 596
A+A+GL+ E P+++ ++ R+C DCH IK I+ V REI++RDA+RFHHFK G CSC
Sbjct: 634 AIAFGLINTSEWTPLQITQSHRICKDCHKVIKFIALVTKREIVVRDASRFHHFKLGKCSC 693
Query: 597 RDYW 600
DYW
Sbjct: 694 GDYW 697
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 443 bits (1141), Expect = e-146
Identities = 223/620 (35%), Positives = 340/620 (54%), Gaps = 32/620 (5%)
Query: 1 MPERNVVSWTAMVRGYVEEGMITEAGTLFWQMPE----------KNVVSWTVMLG--GFI 48
MP R+ +SW AM+ GY E G E LF+ M E +V+S +LG
Sbjct: 248 MPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLG 307
Query: 49 RDSRIDDARRLFDMMPEKDVVAQTNMVLGYCQDGRVDEGREIFDEMPKKNVISWTTMISG 108
R+ + F + DV +++ Y G E ++F M K+ +SWT MISG
Sbjct: 308 REMHGYVVKTGFAV----DVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISG 363
Query: 109 YVNNNRIDVARKLFEVMPEKN----EVSWTAMLMGYTQCGRIQDAWELF----KAMPMKS 160
Y N D A + + +M + N E++ ++L G + +L + +
Sbjct: 364 YEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISY 423
Query: 161 VVASNSMILGLGQNGEVQKARVVFDQMREKDDATWSGMIKVYERKGYELEVIDLFTLMQK 220
VV +N++I + + KA VF + EKD +W+ +I E + F M
Sbjct: 424 VVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQM-L 482
Query: 221 EGVRVNFPSLISVLSVCASLASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVK 280
++ N +LI+ LS CA + +L G+++HA ++R D ++ + L+ +Y++CG +
Sbjct: 483 LTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNY 542
Query: 281 GKLIFDNFASKDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSY 340
F N KD+V WN +++GY +G G ++++F+ M SGV PD+VT + +L ACS
Sbjct: 543 AWNQF-NSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSR 601
Query: 341 TGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAMPFEPDAIIWG 400
+G V +G E F SM+ KY + P +HYAC+VDLLGRAG++ +A I MP PD +WG
Sbjct: 602 SGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWG 661
Query: 401 SLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMRKRN 460
+LL ACR H ++L E+AA+ + +L+P + G YILL N+YA G++ +VA +RK MR+
Sbjct: 662 ALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENG 721
Query: 461 VIKPPGCSWIEVEKKVHMFTGRDCVSHPEHPMIMRMLEKIGGLLREAGYC--PDSSFVLH 518
+ PGCSW+EV+ KVH F D SHP+ I +LE ++ +G SS
Sbjct: 722 LTVDPGCSWVEVKGKVHAFLTDD-ESHPQIKEINTVLEGFYEKMKASGLAGSESSSM--- 777
Query: 519 DVDEEEKVHSLRYHSEKLAVAYGLVKLPEGVPIRVMKNLRVCGDCHSAIKLISKVMGREI 578
D E K HSE+LA+A+GL+ G+PI V KNL +C +CH+ +K ISK++ REI
Sbjct: 778 DEIEVSKDDIFCGHSERLAIAFGLINTVPGMPIWVTKNLYMCENCHNTVKFISKIVRREI 837
Query: 579 ILRDANRFHHFKDGLCSCRD 598
+RD +FHHFKDG CSC D
Sbjct: 838 SVRDTEQFHHFKDGECSCGD 857
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 170 bits (433), Expect = 6e-45
Identities = 118/376 (31%), Positives = 176/376 (46%), Gaps = 37/376 (9%)
Query: 1 MPERNVVSWTAMVRGYVEEGMITEAGTLFWQM----PEKNVVSWTVML---GGFIRDSRI 53
MPER++ SW +V GY + G EA L+ +M +V ++ +L GG I
Sbjct: 147 MPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGG------I 200
Query: 54 DDARR---------LFDMMPEKDVVAQTNMVLGYCQDGRVDEGREIFDEMPKKNVISWTT 104
D R F + DVV ++ Y + G V R +FD MP+++ ISW
Sbjct: 201 PDLARGREVHAHVVRFGFELDVDVV--NALITMYVKCGDVVSARLVFDRMPRRDCISWNA 258
Query: 105 MISGYVNNNRIDVARKLFEVMPEKNEVSWTAM----------LMGYTQCGRIQDAWELFK 154
MISGY N +LF M E V M L+G + GR + +
Sbjct: 259 MISGYFENGECLEGLELFFTMRE-LSVDPDLMTITSVISACELLGDERLGREMHGYVVKT 317
Query: 155 AMPMKSVVASNSMILGLGQNGEVQKARVVFDQMREKDDATWSGMIKVYERKGYELEVIDL 214
+ V NS+I G +A VF +M KD +W+ MI YE+ G + ++
Sbjct: 318 GFAV-DVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALET 376
Query: 215 FTLMQKEGVRVNFPSLISVLSVCASLASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIK 274
+ LM+++ V + ++ SVLS CA L LD G ++H R V VA+ LI MY K
Sbjct: 377 YALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSK 436
Query: 275 CGELVKGKLIFDNFASKDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGV 334
C + K +F N KD++ W SII+G ++L F +M + + P+ VTL+
Sbjct: 437 CKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLT-LKPNSVTLIAA 495
Query: 335 LSACSYTGKVKEGREI 350
LSAC+ G + G+EI
Sbjct: 496 LSACARIGALMCGKEI 511
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 148 bits (376), Expect = 1e-37
Identities = 98/345 (28%), Positives = 167/345 (48%), Gaps = 32/345 (9%)
Query: 82 GRVDEGREIFDEMPKKNVISWTTMISGYVNNNRIDVARKLFEVMPEKNEVSWTAMLMG-Y 140
G + +F +MP++++ SW ++ GY D A L+ M W + Y
Sbjct: 135 GELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRM------LWAGVRPDVY 188
Query: 141 T------QCGRIQDAWELFKAMPMK--------SVVASNSMILGLGQNGEVQKARVVFDQ 186
T CG I D + + V N++I + G+V AR+VFD+
Sbjct: 189 TFPCVLRTCGGIPD-LARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDR 247
Query: 187 MREKDDATWSGMIKVYERKGYELEVIDLFTLMQKEGVRVNFPSLISVLSVCASLASLDHG 246
M +D +W+ MI Y G LE ++LF M++ V + ++ SV+S C L G
Sbjct: 248 MPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLG 307
Query: 247 RQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFASKDIVMWNSIISGYAQY 306
R++H +V+ F VDV V + LI MY+ G + + +F +KD V W ++ISGY +
Sbjct: 308 REMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKN 367
Query: 307 GLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSK----YLVEP 362
GL +K+L+ + M V PD++T+ VLSAC+ G + G ++ E + K Y+V
Sbjct: 368 GLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVA 427
Query: 363 KTEHYACMVDLLGRAGQVEDAMKLIEAMPFEPDAIIWGSLLGACR 407
++++ + ++ A+++ +P E D I W S++ R
Sbjct: 428 NA-----LIEMYSKCKCIDKALEVFHNIP-EKDVISWTSIIAGLR 466
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 148 bits (374), Expect = 3e-37
Identities = 100/359 (27%), Positives = 160/359 (44%), Gaps = 57/359 (15%)
Query: 154 KAMPMKSVVASNSMILGLGQNGEVQKARVVFDQMREKDDATWSGMIKVYERKGYELEVID 213
+ P V N+M+ + GE+ A VF +M E+D +W+ ++ Y + GY E +
Sbjct: 114 SSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALC 173
Query: 214 LFTLMQKEGVRVNFPSLISVLSVCASLASLDHGRQVHAQLVRCQFDVDVYVASVLITMYI 273
L+ M GVR + + VL C + L GR+VHA +VR F++DV V + LITMY+
Sbjct: 174 LYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYV 233
Query: 274 KCGELVKGKLIFDNFASKDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVG 333
KCG++V +L+FD +D + WN++ISGY + G + L++F M V PD +T+
Sbjct: 234 KCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITS 293
Query: 334 VLSAC-----------------------------------SYTGKVKEGREIFESMKSKY 358
V+SAC G E ++F M++K
Sbjct: 294 VISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKD 353
Query: 359 LVEPKTEHYACMVDLLGRAGQVEDAMKLIEAMPFEPDAIIWGSLLGACRTHMKLD----L 414
V + L + + L+E PD I S+L AC LD L
Sbjct: 354 AVSWTAMISGYEKNGL--PDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKL 411
Query: 415 AEVAAKKLLQLEPKNAGPYILLSN----IYASQGRFHDVAELRKNMRKRNVIKPPGCSW 469
E+A +K L Y++++N +Y+ E+ N+ +++VI SW
Sbjct: 412 HELAERKGLIS-------YVVVANALIEMYSKCKCIDKALEVFHNIPEKDVI-----SW 458
|
Length = 857 |
| >gnl|CDD|222749 pfam14432, DYW_deaminase, DYW family of nucleic acid deaminases | Back alignment and domain information |
|---|
Score = 99.0 bits (247), Expect = 8e-25
Identities = 50/132 (37%), Positives = 70/132 (53%), Gaps = 22/132 (16%)
Query: 465 PGCSWIEVEKKVHMFTGRDCVSHPEHPMIMRMLEKIGGLLREAGYCPDSSFVLHDVDEEE 524
PGC W E +K +G SHP ++ ++ G P++ + HDVD EE
Sbjct: 1 PGCVWSEGKK---TLSGDG--SHPTSKE------ELFQRIKVEGVVPETKEIGHDVDAEE 49
Query: 525 KVHSLRY------HSEKLAVAYGLVKLPEGVPIRVMKNLRVCGDCHSAIKLISKVMGREI 578
+ H+EK A+AYGL+ I+V+K R+CGDCH + I+K GREI
Sbjct: 50 FRDNGIKGKLLASHAEKQALAYGLL---TTRIIKVLK--RMCGDCHEFFRYIAKYTGREI 104
Query: 579 ILRDANRFHHFK 590
I+RD +RFHHFK
Sbjct: 105 IVRDPSRFHHFK 116
|
A family of nucleic acid deaminases prototyped by the plant PPR DYW proteins that are implicated in chloroplast and mitochondrial RNA transcript maturation by numerous C to U editing events. The name derives from the DYW motif present at the C-terminus of the classical plant PPR DYW deaminases. Members of this family are present in bacteria, plants, Naegleria, and fungi. Plants and Naegleria show lineage-specific expansions of this family. The classical DYW family contain an additional C-terminal metal-binding cluster composed of 2 histidines and a CxC motif and are often fused to PPR repeats. Ascomycete versions, which are independent lateral transfers, contain a large insert within the domain and are often fused to ankyrin repeats. Bacterial versions are predicted to function as toxins in polymorphic toxin systems. Length = 116 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 79.1 bits (195), Expect = 2e-15
Identities = 48/207 (23%), Positives = 95/207 (45%), Gaps = 15/207 (7%)
Query: 210 EVIDLFTLMQKEGVRVNFPSLISV------LSVCASLASLDHGRQVHAQLVRCQFDVDVY 263
E ++LF E + P + + C +L S+ + V+ + F+ D Y
Sbjct: 105 EALELF-----EILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQY 159
Query: 264 VASVLITMYIKCGELVKGKLIFDNFASKDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSG 323
+ + ++ M++KCG L+ + +FD +++ W +II G G ++ +F EM+ G
Sbjct: 160 MMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDG 219
Query: 324 VMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYAC-MVDLLGRAGQVED 382
+ T V +L A + G + G+++ + +V +C ++D+ + G +ED
Sbjct: 220 SDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVG--DTFVSCALIDMYSKCGDIED 277
Query: 383 AMKLIEAMPFEPDAIIWGSLLGACRTH 409
A + + MP E + W S+L H
Sbjct: 278 ARCVFDGMP-EKTTVAWNSMLAGYALH 303
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 70.3 bits (172), Expect = 2e-12
Identities = 45/194 (23%), Positives = 97/194 (50%), Gaps = 2/194 (1%)
Query: 210 EVIDLFTLMQKEGVRVNFPSLISVLSVCASLASLDHGRQVHAQLVRCQFDVDVYVASVLI 269
+ + L MQ+ V V+ + +++ +C +++ G +V ++ + + V + + ++
Sbjct: 69 QALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAML 128
Query: 270 TMYIKCGELVKGKLIFDNFASKDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDV 329
+M+++ GELV +F +D+ WN ++ GYA+ G +++L ++H M +GV PD
Sbjct: 129 SMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVY 188
Query: 330 TLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEA 389
T VL C + GRE+ + ++ E + ++ + + G V A + +
Sbjct: 189 TFPCVLRTCGGIPDLARGREVHAHV-VRFGFELDVDVVNALITMYVKCGDVVSARLVFDR 247
Query: 390 MPFEPDAIIWGSLL 403
MP D I W +++
Sbjct: 248 MPRR-DCISWNAMI 260
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 63.4 bits (154), Expect = 2e-10
Identities = 53/214 (24%), Positives = 94/214 (43%), Gaps = 22/214 (10%)
Query: 3 ERNVVSWTAMVRGYVEEGMITEAGTLFWQMPEKNVVSWTVMLGGFIRDSRIDDARRLFDM 62
++V+ TA+V Y + G + +A +F +MP KN++SW ++ G+ R A +F+
Sbjct: 357 PLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFER 416
Query: 63 MPEKDVVAQ--TNM-VLGYCQ-DGRVDEGREIFDEMP-----KKNVISWTTMISGYVNNN 113
M + V T + VL C+ G ++G EIF M K + + MI
Sbjct: 417 MIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREG 476
Query: 114 RIDVARKLFEVMPEKNEVS-WTAMLMGYTQCGRIQDAWELFKAMPMKSVVASNSMILGLG 172
+D A + P K V+ W A+L T C RI EL + + A +G
Sbjct: 477 LLDEAYAMIRRAPFKPTVNMWAALL---TAC-RIHKNLELGR------LAAEKLYGMGPE 526
Query: 173 QNGEVQKARVVFDQMREKDDATWSGMIKVYERKG 206
+ +++ + +A + +++ +RKG
Sbjct: 527 KLNNYVVLLNLYNSSGRQAEA--AKVVETLKRKG 558
|
Length = 697 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 57.2 bits (138), Expect = 2e-08
Identities = 85/412 (20%), Positives = 170/412 (41%), Gaps = 46/412 (11%)
Query: 48 IRDSRIDDARRLFDMMPEKDVVAQTNM----VLGYCQDGR-VDEGREIFDEMPKKNVISW 102
+RD RI D L + M ++ ++ + C+ R V E + + ++
Sbjct: 381 LRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTF 440
Query: 103 TTMISGYVNNNRIDVARKLFEVMPEKNEVSWTAMLMGYT-------QCGRIQDAWELFKA 155
++S ++ ID A V+ E A YT + G++ +E+F
Sbjct: 441 NMLMSVCASSQDIDGA---LRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHE 497
Query: 156 MPMKSVVAS----NSMILGLGQNGEVQKARVVFDQMREK----DDATWSGMIKVYERKGY 207
M V A+ ++I G + G+V KA + MR K D ++ +I + G
Sbjct: 498 MVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGA 557
Query: 208 ELEVIDLFTLMQKEGVRVNFPSLISV---LSVCASLASLDHGRQVHAQLVRCQFDV---- 260
D+ M+ E ++ P I+V + CA+ +D ++V+ Q++ ++++
Sbjct: 558 VDRAFDVLAEMKAETHPID-PDHITVGALMKACANAGQVDRAKEVY-QMIH-EYNIKGTP 614
Query: 261 DVYVASVLITMYIKCGELVKGKLIFDNFASKDI----VMWNSIISGYAQYGLGEKSLKVF 316
+VY +V + G+ I+D+ K + V +++++ G +K+ ++
Sbjct: 615 EVYTIAV--NSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEIL 672
Query: 317 HEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGR 376
+ G+ V+ ++ ACS K+ E++E +KS L P ++ L
Sbjct: 673 QDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKL-RPTVSTMNALITALCE 731
Query: 377 AGQVEDAMKLIEAMP---FEPDAIIWGSLLGACRTHMKLDLAEVAAKKLLQL 425
Q+ A++++ M P+ I + LL A + D A+V L Q
Sbjct: 732 GNQLPKALEVLSEMKRLGLCPNTITYSILLVASE---RKDDADVGLDLLSQA 780
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 50.1 bits (121), Expect = 2e-08
Identities = 16/48 (33%), Positives = 29/48 (60%)
Query: 291 KDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSAC 338
D+V +N++I GY + G E++LK+F+EM G+ P+ T ++
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 49.3 bits (119), Expect = 5e-08
Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 4/50 (8%)
Query: 66 KDVVAQTNMVLGYCQDGRVDEGREIFDEMPKK----NVISWTTMISGYVN 111
DVV ++ GYC+ G+V+E ++F+EM K+ NV +++ +I G
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 48.6 bits (117), Expect = 7e-08
Identities = 12/48 (25%), Positives = 27/48 (56%), Gaps = 4/48 (8%)
Query: 97 KNVISWTTMISGYVNNNRIDVARKLFEVMPEK----NEVSWTAMLMGY 140
+V+++ T+I GY +++ A KLF M ++ N +++ ++ G
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 51.4 bits (123), Expect = 1e-06
Identities = 41/168 (24%), Positives = 71/168 (42%), Gaps = 25/168 (14%)
Query: 1 MPERNVVSWTAMVRGYVEEGMITEAGTLFWQMPEKNV----VSWTVMLGGFIRDSRIDDA 56
MP +N++SW A++ GY G T+A +F +M + V V++ +L +
Sbjct: 386 MPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQG 445
Query: 57 RRLFDMMPEKDVVAQTNM-------VLGYCQDGRVDEGREIFDEMPKKNVISWTTMISGY 109
+F M E + M +LG ++G +DE + P K ++ M +
Sbjct: 446 WEIFQSMSENHRIKPRAMHYACMIELLG--REGLLDEAYAMIRRAPFKPTVN---MWAAL 500
Query: 110 VNNNRID--------VARKLFEVMPEKNEVSWTAMLMGYTQCGRIQDA 149
+ RI A KL+ + PEK ++ +L Y GR +A
Sbjct: 501 LTACRIHKNLELGRLAAEKLYGMGPEKLN-NYVVLLNLYNSSGRQAEA 547
|
Length = 697 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 42.4 bits (101), Expect = 1e-05
Identities = 13/47 (27%), Positives = 30/47 (63%), Gaps = 4/47 (8%)
Query: 5 NVVSWTAMVRGYVEEGMITEAGTLFWQMPEK----NVVSWTVMLGGF 47
+VV++ ++ GY ++G + EA LF +M ++ NV ++++++ G
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 41.2 bits (98), Expect = 3e-05
Identities = 13/48 (27%), Positives = 28/48 (58%), Gaps = 4/48 (8%)
Query: 159 KSVVASNSMILGLGQNGEVQKARVVFDQMREK----DDATWSGMIKVY 202
VV N++I G + G+V++A +F++M+++ + T+S +I
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 40.5 bits (96), Expect = 4e-05
Identities = 15/31 (48%), Positives = 22/31 (70%)
Query: 294 VMWNSIISGYAQYGLGEKSLKVFHEMFSSGV 324
V +NS+ISGY + G E++L++F EM GV
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 40.5 bits (96), Expect = 5e-05
Identities = 10/50 (20%), Positives = 30/50 (60%), Gaps = 4/50 (8%)
Query: 35 KNVVSWTVMLGGFIRDSRIDDARRLFDMMPEK----DVVAQTNMVLGYCQ 80
+VV++ ++ G+ + ++++A +LF+ M ++ +V + ++ G C+
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 38.9 bits (92), Expect = 2e-04
Identities = 9/29 (31%), Positives = 17/29 (58%)
Query: 98 NVISWTTMISGYVNNNRIDVARKLFEVMP 126
+V+++ T+I G R+D A +L + M
Sbjct: 6 DVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 38.6 bits (91), Expect = 2e-04
Identities = 13/35 (37%), Positives = 22/35 (62%)
Query: 294 VMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDD 328
V +N++I G + G E++L++F EM G+ PD
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 43.7 bits (103), Expect = 3e-04
Identities = 54/309 (17%), Positives = 115/309 (37%), Gaps = 55/309 (17%)
Query: 102 WTTMISGYVNNNRIDVARKLFEVMP----EKNEVSWTAMLMGYTQCGRIQDAWELFKAMP 157
+TT+IS + ++D ++F M E N ++ A++ G + G++ A+ + M
Sbjct: 475 YTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMR 534
Query: 158 MKSV----VASNSMILGLGQNGEVQKARVVFDQMREK------DDATWSGMIKVYERKGY 207
K+V V N++I GQ+G V +A V +M+ + D T ++K G
Sbjct: 535 SKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQ 594
Query: 208 ELEVIDLFTLMQKEGVRVNFPSLIS-VLSVCASLASLDHGRQV----------------- 249
+++ ++ + ++ P + + ++ C+ D +
Sbjct: 595 VDRAKEVYQMIHEYNIK-GTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFS 653
Query: 250 -------HAQLVRCQFDV-----------DVYVASVLITMYIKCGELVKGKLIFDNFAS- 290
HA + F++ S L+ K ++++ S
Sbjct: 654 ALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSI 713
Query: 291 ---KDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEG 347
+ N++I+ + K+L+V EM G+ P+ +T +L A G
Sbjct: 714 KLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVG 773
Query: 348 REIFESMKS 356
++ K
Sbjct: 774 LDLLSQAKE 782
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 38.5 bits (91), Expect = 3e-04
Identities = 11/48 (22%), Positives = 27/48 (56%), Gaps = 4/48 (8%)
Query: 128 KNEVSWTAMLMGYTQCGRIQDAWELFKAMPMKSVVAS----NSMILGL 171
+ V++ ++ GY + G++++A +LF M + + + + +I GL
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 40.1 bits (94), Expect = 3e-04
Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
Query: 377 AGQVEDAMKLIE-AMPFEPD-AIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYI 434
G ++A++ E A+ +PD A + +L A K + A +K L+L+P NA Y
Sbjct: 13 LGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYY 72
Query: 435 LLSNIYASQGRF 446
L Y G++
Sbjct: 73 NLGLAYYKLGKY 84
|
Length = 100 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 36.6 bits (86), Expect = 9e-04
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 67 DVVAQTNMVLGYCQDGRVDEGREIFDEMP 95
DVV ++ G C+ GRVDE E+ DEM
Sbjct: 6 DVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 35.9 bits (84), Expect = 0.001
Identities = 10/30 (33%), Positives = 20/30 (66%)
Query: 100 ISWTTMISGYVNNNRIDVARKLFEVMPEKN 129
+++ ++ISGY +++ A +LF+ M EK
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKG 30
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 36.6 bits (86), Expect = 0.001
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 36 NVVSWTVMLGGFIRDSRIDDARRLFDMMP 64
+VV++ ++ G R R+D+A L D M
Sbjct: 6 DVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 35.5 bits (83), Expect = 0.003
Identities = 12/31 (38%), Positives = 22/31 (70%)
Query: 131 VSWTAMLMGYTQCGRIQDAWELFKAMPMKSV 161
V++ +++ GY + G++++A ELFK M K V
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 600 | |||
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.98 | |
| PF14432 | 116 | DYW_deaminase: DYW family of nucleic acid deaminas | 99.97 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.91 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.9 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.9 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.87 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.86 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.86 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.86 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.84 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.83 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.83 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.83 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.82 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.82 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.8 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.8 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.8 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.72 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.7 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.68 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.59 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.58 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.58 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.57 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.57 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.56 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.54 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.51 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.5 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.49 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.47 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.47 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.46 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.46 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.45 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.45 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.44 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.42 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.39 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.37 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.37 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.36 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.36 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.34 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.33 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.32 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.3 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.25 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.24 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.24 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.22 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.22 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.2 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.2 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.18 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.17 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.14 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.12 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.09 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.09 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.05 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.05 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.05 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.01 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 98.99 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 98.98 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.96 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.94 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 98.94 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 98.94 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 98.94 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.85 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 98.85 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.82 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 98.8 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.8 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.79 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.78 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.76 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.76 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.74 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.72 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 98.7 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 98.7 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 98.7 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.7 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.68 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.67 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.65 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.64 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 98.6 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.6 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.59 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.55 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.54 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.52 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.51 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.51 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.47 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.47 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.47 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.47 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.46 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.46 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.45 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.45 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.44 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.4 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.4 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.36 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.34 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.31 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.3 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.28 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.27 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.27 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.23 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.21 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.21 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.2 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.19 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.15 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.15 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.15 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.1 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.1 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.09 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.06 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.04 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.01 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.0 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.0 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.88 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 97.87 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.87 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.84 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 97.83 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.82 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.81 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 97.78 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.75 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.74 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.74 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 97.73 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.72 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.72 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.7 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.69 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.68 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.63 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.63 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.59 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.58 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.56 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.55 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.54 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.54 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 97.53 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.49 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.47 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.43 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 97.42 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.4 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.39 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.39 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.37 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.31 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.25 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.21 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.2 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 97.2 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.18 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 97.18 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.17 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.15 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.07 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.07 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.06 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.06 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.05 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.05 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 97.03 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 96.98 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 96.97 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 96.95 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 96.92 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 96.92 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 96.9 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 96.86 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 96.86 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.82 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.78 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 96.75 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 96.74 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 96.72 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 96.71 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.71 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 96.67 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.61 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.56 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 96.54 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.53 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.52 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 96.5 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 96.5 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 96.45 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 96.4 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.35 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 96.3 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 96.29 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 96.25 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 96.19 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 96.15 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.14 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 96.12 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 96.02 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 95.97 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 95.96 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 95.87 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 95.69 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 95.65 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 95.65 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 95.53 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 95.49 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 95.47 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 95.44 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 95.34 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 95.24 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 95.1 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 95.02 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 94.92 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 94.87 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 94.73 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 94.7 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 94.68 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 94.62 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 94.49 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 94.48 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 94.41 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 94.41 | |
| PRK09687 | 280 | putative lyase; Provisional | 94.24 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 94.23 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 93.85 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 93.83 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 93.65 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 93.48 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 93.48 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 93.35 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 93.32 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 93.3 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 93.24 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 93.2 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 93.11 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 92.85 | |
| PRK09687 | 280 | putative lyase; Provisional | 92.8 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 92.78 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 92.68 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 92.65 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 92.64 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 92.55 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 92.46 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 92.43 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 92.16 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 92.09 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 92.0 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 91.7 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 91.55 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 91.18 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 91.06 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 90.75 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 90.67 | |
| PRK13800 | 897 | putative oxidoreductase/HEAT repeat-containing pro | 90.36 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 90.3 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 90.22 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 89.51 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 89.45 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 89.33 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 89.3 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 89.27 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 89.23 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 89.14 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 89.08 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 89.07 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 88.83 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 88.78 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 88.62 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 88.39 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 88.24 | |
| TIGR02270 | 410 | conserved hypothetical protein. Members are found | 87.85 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 87.8 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 87.39 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 87.38 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 86.99 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 86.99 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 86.82 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 86.77 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 86.02 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 85.8 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 85.66 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 85.48 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 84.73 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 84.66 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 84.6 | |
| PRK10941 | 269 | hypothetical protein; Provisional | 83.94 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 83.67 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 83.64 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 83.58 | |
| KOG3364 | 149 | consensus Membrane protein involved in organellar | 83.48 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 83.42 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 82.69 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 82.66 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 81.51 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 81.49 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 80.71 | |
| TIGR02508 | 115 | type_III_yscG type III secretion protein, YscG fam | 80.69 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 80.66 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 80.46 |
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-123 Score=1006.50 Aligned_cols=596 Identities=35% Similarity=0.644 Sum_probs=585.4
Q ss_pred CCcchHHHHHHHHHhCCChHHHHHHHhhCC-----CCCcchHHHHHHHHHcCCCHHHHHHHHccCC----CCCcchHHHH
Q 007517 4 RNVVSWTAMVRGYVEEGMITEAGTLFWQMP-----EKNVVSWTVMLGGFIRDSRIDDARRLFDMMP----EKDVVAQTNM 74 (600)
Q Consensus 4 p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~-----~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~----~~~~~~~~~l 74 (600)
++.++|+++|.+|.+.|++++|+++|+.|. .||..+|+.++.+|++.++++.|.+++..|. .||..+||.|
T Consensus 85 ~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~L 164 (697)
T PLN03081 85 KSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRV 164 (697)
T ss_pred CCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHH
Confidence 456799999999999999999999999996 4688999999999999999999999999997 6899999999
Q ss_pred HHHHHhcCChHHHHHHHhhCCCCCcccHHHHHHHHHhCCChHHHHHHHhhcCC----CCcchHHHHHHHHhcCCChHHHH
Q 007517 75 VLGYCQDGRVDEGREIFDEMPKKNVISWTTMISGYVNNNRIDVARKLFEVMPE----KNEVSWTAMLMGYTQCGRIQDAW 150 (600)
Q Consensus 75 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----p~~~t~~~ll~~~~~~g~~~~a~ 150 (600)
+.+|++.|++++|.++|++|++||+++||+||.+|++.|++++|+++|++|.+ ||..||+.++.+|+..|+.+.+.
T Consensus 165 i~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~ 244 (697)
T PLN03081 165 LLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQ 244 (697)
T ss_pred HHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHH
Confidence 99999999999999999999999999999999999999999999999999977 99999999999999999999999
Q ss_pred HHHhhCC----CCCccchhHHHHHHHhcCCHHHHHHHHHhcccCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCccC
Q 007517 151 ELFKAMP----MKSVVASNSMILGLGQNGEVQKARVVFDQMREKDDATWSGMIKVYERKGYELEVIDLFTLMQKEGVRVN 226 (600)
Q Consensus 151 ~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 226 (600)
++|..+. .+|..++|+||++|+++|++++|.++|++|.++|+++||+||.+|++.|++++|+++|++|.+.|+.||
T Consensus 245 ~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd 324 (697)
T PLN03081 245 QLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSID 324 (697)
T ss_pred HHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Confidence 9999887 789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHhhHHHHHhhhcchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHhhhhhcCCCCHHHHHHHHHHHHhc
Q 007517 227 FPSLISVLSVCASLASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFASKDIVMWNSIISGYAQY 306 (600)
Q Consensus 227 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~ 306 (600)
..||++++.+|++.|+++.|.++|..+.+.|++||..++++||++|+++|++++|.++|++|.++|+++||+||.+|+++
T Consensus 325 ~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~ 404 (697)
T PLN03081 325 QFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNH 404 (697)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHH
Q 007517 307 GLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKL 386 (600)
Q Consensus 307 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 386 (600)
|+.++|+++|++|.+.|+.||..||+.+|.+|++.|++++|.++|+.|.+++|+.|+..+|++|+++|++.|++++|.++
T Consensus 405 G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~ 484 (697)
T PLN03081 405 GRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAM 484 (697)
T ss_pred CCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998889999999999999999999999999999
Q ss_pred HHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCCccCCc
Q 007517 387 IEAMPFEPDAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMRKRNVIKPPG 466 (600)
Q Consensus 387 ~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~ 466 (600)
+++|++.|+..+|++|+.+|+.+|+.+.|..+++++.+++|+++.+|..|+++|++.|+|++|.++++.|+++|+.+.||
T Consensus 485 ~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g 564 (697)
T PLN03081 485 IRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPA 564 (697)
T ss_pred HHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEeCCEEEEEEcCCCCCCCChHHHHHHHHHHHHHHHHcCcccCCCccccccchhhhhhhhhhhhHHHHHHHhhcCCC
Q 007517 467 CSWIEVEKKVHMFTGRDCVSHPEHPMIMRMLEKIGGLLREAGYCPDSSFVLHDVDEEEKVHSLRYHSEKLAVAYGLVKLP 546 (600)
Q Consensus 467 ~s~~~~~~~~~~f~~~~~~~~~~~~~~~~~l~~l~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~e~la~~~~~~~~~ 546 (600)
+||+++++.+|.|.+||.+ ||+.++||..++++...|++.||.||+.+++||+++++++..+.+||||||+||||+++|
T Consensus 565 ~s~i~~~~~~~~f~~~d~~-h~~~~~i~~~l~~l~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~hsekla~a~~l~~~~ 643 (697)
T PLN03081 565 CTWIEVKKQDHSFFSGDRL-HPQSREIYQKLDELMKEISEYGYVAEENELLPDVDEDEEKVSGRYHSEKLAIAFGLINTS 643 (697)
T ss_pred eeEEEECCeEEEEccCCCC-CccHHHHHHHHHHHHHHHHHcCCCCCcchhhccccHHHHHHHHHhccHHHHHHhhCccCC
Confidence 9999999999999999999 999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEccccccccchhhHHHHhhhhCceEEEecCCcccccCCCccCCCCCC
Q 007517 547 EGVPIRVMKNLRVCGDCHSAIKLISKVMGREIILRDANRFHHFKDGLCSCRDYW 600 (600)
Q Consensus 547 ~~~~~~~~~~l~~c~~~~~~~~~~s~~~~~~~~~~~~~~~h~~~~g~csc~~~~ 600 (600)
+|.||||+||||+|+|||+++|+||++++|+|||||.+|||||+||+|||+|||
T Consensus 644 ~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d~w 697 (697)
T PLN03081 644 EWTPLQITQSHRICKDCHKVIKFIALVTKREIVVRDASRFHHFKLGKCSCGDYW 697 (697)
T ss_pred CCCeEEEecCCEECCCchhhHHHHhhhcceEEEEecCCccccCCCCcccccccC
Confidence 999999999999999999999999999999999999999999999999999999
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-120 Score=1011.15 Aligned_cols=594 Identities=36% Similarity=0.665 Sum_probs=569.8
Q ss_pred CCCCCcchHHHHHHHHHhCCChHHHHHHHhhCC----CCCcchHHHHHHHHHcCCCHHHHHHHHccCC----CCCcchHH
Q 007517 1 MPERNVVSWTAMVRGYVEEGMITEAGTLFWQMP----EKNVVSWTVMLGGFIRDSRIDDARRLFDMMP----EKDVVAQT 72 (600)
Q Consensus 1 ~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~----~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~----~~~~~~~~ 72 (600)
||.||+++||++|.+|++.|++++|+++|.+|. .||.+||+.++.+|++.|+++.|.+++..|. .||..+||
T Consensus 248 m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n 327 (857)
T PLN03077 248 MPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCN 327 (857)
T ss_pred CCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHH
Confidence 567777778888888888888888888777775 5777788888888888888888888777776 57899999
Q ss_pred HHHHHHHhcCChHHHHHHHhhCCCCCcccHHHHHHHHHhCCChHHHHHHHhhcCC----CCcchHHHHHHHHhcCCChHH
Q 007517 73 NMVLGYCQDGRVDEGREIFDEMPKKNVISWTTMISGYVNNNRIDVARKLFEVMPE----KNEVSWTAMLMGYTQCGRIQD 148 (600)
Q Consensus 73 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----p~~~t~~~ll~~~~~~g~~~~ 148 (600)
+||.+|++.|++++|.++|++|.+||+++||+||.+|.+.|++++|+++|++|.+ ||..||++++.+|++.|+++.
T Consensus 328 ~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~ 407 (857)
T PLN03077 328 SLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDV 407 (857)
T ss_pred HHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHH
Confidence 9999999999999999999999999999999999999999999999999999976 999999999999999999999
Q ss_pred HHHHHhhCC----CCCccchhHHHHHHHhcCCHHHHHHHHHhcccCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCc
Q 007517 149 AWELFKAMP----MKSVVASNSMILGLGQNGEVQKARVVFDQMREKDDATWSGMIKVYERKGYELEVIDLFTLMQKEGVR 224 (600)
Q Consensus 149 a~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 224 (600)
|.++|+.+. .++..++|+||++|+++|++++|.++|++|.++|+++||+||.+|.++|+.++|+.+|++|.. +++
T Consensus 408 a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~ 486 (857)
T PLN03077 408 GVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLK 486 (857)
T ss_pred HHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCC
Confidence 999999998 788899999999999999999999999999999999999999999999999999999999986 699
Q ss_pred cCchhHhhHHHHHhhhcchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHhhhhhcCCCCHHHHHHHHHHHH
Q 007517 225 VNFPSLISVLSVCASLASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFASKDIVMWNSIISGYA 304 (600)
Q Consensus 225 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~ 304 (600)
||..||++++.+|++.|+++.+.++|..+.+.|+.++..++|+||++|+++|++++|.++|+.+ .+|+++||+||.+|+
T Consensus 487 pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~ 565 (857)
T PLN03077 487 PNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYV 565 (857)
T ss_pred CCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999 899999999999999
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHH
Q 007517 305 QYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAM 384 (600)
Q Consensus 305 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 384 (600)
++|+.++|+++|++|.+.|+.||..||+.+|.+|++.|++++|.++|+.|.+++|+.|+..+|++|+++|+|+|++++|.
T Consensus 566 ~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~ 645 (857)
T PLN03077 566 AHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAY 645 (857)
T ss_pred HcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999977899999999999999999999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCCccC
Q 007517 385 KLIEAMPFEPDAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMRKRNVIKP 464 (600)
Q Consensus 385 ~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~ 464 (600)
+++++|+++||..+|++|+.+|..+|+.+.|+.+.+++++++|+++..|+.|+++|+..|+|++|.++++.|+++|+.|+
T Consensus 646 ~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~ 725 (857)
T PLN03077 646 NFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVD 725 (857)
T ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeEEEeCCEEEEEEcCCCCCCCChHHHHHHHHHHHHHHHHcCcccCCCccccccchhhhhhhhhhhhHHHHHHHhhcC
Q 007517 465 PGCSWIEVEKKVHMFTGRDCVSHPEHPMIMRMLEKIGGLLREAGYCPDSSFVLHDVDEEEKVHSLRYHSEKLAVAYGLVK 544 (600)
Q Consensus 465 ~~~s~~~~~~~~~~f~~~~~~~~~~~~~~~~~l~~l~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~e~la~~~~~~~ 544 (600)
||+|||++++++|.|.+||.+ ||+.++||..|+++..+|++.||.||+..++ ++++++|+..+++||||||+||||++
T Consensus 726 ~g~s~ie~~~~~~~f~~~d~~-h~~~~~i~~~l~~l~~~~~~~g~~~~~~~~~-~~~~~~k~~~~~~hse~la~a~~l~~ 803 (857)
T PLN03077 726 PGCSWVEVKGKVHAFLTDDES-HPQIKEINTVLEGFYEKMKASGLAGSESSSM-DEIEVSKDDIFCGHSERLAIAFGLIN 803 (857)
T ss_pred CCccEEEECCEEEEEecCCCC-CcchHHHHHHHHHHHHHHHhCCcCCCcchhc-cccHHHHHHHHHhccHHHHHHHhhhc
Confidence 999999999999999999999 9999999999999999999999999999888 44788899999999999999999999
Q ss_pred CCCCCcEEEEccccccccchhhHHHHhhhhCceEEEecCCcccccCCCccCCCC
Q 007517 545 LPEGVPIRVMKNLRVCGDCHSAIKLISKVMGREIILRDANRFHHFKDGLCSCRD 598 (600)
Q Consensus 545 ~~~~~~~~~~~~l~~c~~~~~~~~~~s~~~~~~~~~~~~~~~h~~~~g~csc~~ 598 (600)
||+|+||||+||||+|+|||+++|+||++++|||||||.+|||||+||+|||+|
T Consensus 804 ~~~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d 857 (857)
T PLN03077 804 TVPGMPIWVTKNLYMCENCHNTVKFISKIVRREISVRDTEQFHHFKDGECSCGD 857 (857)
T ss_pred CCCCCeEEEeCCCEeCccHHHHHHHHHHHhCeEEEEecCCcceeCCCCcccCCC
Confidence 999999999999999999999999999999999999999999999999999998
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-73 Score=631.84 Aligned_cols=573 Identities=25% Similarity=0.350 Sum_probs=479.7
Q ss_pred CCCCCcchHHHHHHHHHhCCChHHHHHHHhhCC----CCCcchHHHHHHHHHcCCCHHHHHHHHccCC----CCCcchHH
Q 007517 1 MPERNVVSWTAMVRGYVEEGMITEAGTLFWQMP----EKNVVSWTVMLGGFIRDSRIDDARRLFDMMP----EKDVVAQT 72 (600)
Q Consensus 1 ~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~----~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~----~~~~~~~~ 72 (600)
|++||+++||++|.+|++.|++++|+++|++|. .||.+||++++++|++.+++..+.+++..|. .+|+.++|
T Consensus 147 m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n 226 (857)
T PLN03077 147 MPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVN 226 (857)
T ss_pred CCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHh
Confidence 455666666666666666666666666666654 4566666666666666666666666665554 46778889
Q ss_pred HHHHHHHhcCChHHHHHHHhhCCCCCcccHHHHHHHHHhCCChHHHHHHHhhcCC----CCcchHHHHHHHHhcCCChHH
Q 007517 73 NMVLGYCQDGRVDEGREIFDEMPKKNVISWTTMISGYVNNNRIDVARKLFEVMPE----KNEVSWTAMLMGYTQCGRIQD 148 (600)
Q Consensus 73 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----p~~~t~~~ll~~~~~~g~~~~ 148 (600)
+||.+|++.|++++|.++|++|++||+++||+||.+|++.|++++|+++|++|.+ ||..||+.++.+|++.|+++.
T Consensus 227 ~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~ 306 (857)
T PLN03077 227 ALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERL 306 (857)
T ss_pred HHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHH
Confidence 9999999999999999999999999999999999999999999999999999977 999999999999999999999
Q ss_pred HHHHHhhCC----CCCccchhHHHHHHHhcCCHHHHHHHHHhcccCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCc
Q 007517 149 AWELFKAMP----MKSVVASNSMILGLGQNGEVQKARVVFDQMREKDDATWSGMIKVYERKGYELEVIDLFTLMQKEGVR 224 (600)
Q Consensus 149 a~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 224 (600)
|.++|..+. .+|..+||+|+++|+++|++++|.++|++|..+|+++||+||.+|.+.|++++|+++|++|.+.|+.
T Consensus 307 a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~ 386 (857)
T PLN03077 307 GREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVS 386 (857)
T ss_pred HHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC
Confidence 999999998 7899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCchhHhhHHHHHhhhcchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHhhhhhcCCCCHHHHHHHHHHHH
Q 007517 225 VNFPSLISVLSVCASLASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFASKDIVMWNSIISGYA 304 (600)
Q Consensus 225 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~ 304 (600)
||..||+.++.+|++.|+++.|.++|+.+.+.|+.++..++|+||++|+++|++++|.++|++|.++|+++||+||.+|+
T Consensus 387 Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~ 466 (857)
T PLN03077 387 PDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLR 466 (857)
T ss_pred CCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHH
Q 007517 305 QYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAM 384 (600)
Q Consensus 305 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 384 (600)
++|+.++|+++|++|.. +++||..||+.+|.+|++.|.++.+.+++..+.+. |+.++..++++|+++|.++|++++|.
T Consensus 467 ~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~-g~~~~~~~~naLi~~y~k~G~~~~A~ 544 (857)
T PLN03077 467 LNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRT-GIGFDGFLPNALLDLYVRCGRMNYAW 544 (857)
T ss_pred HCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHh-CCCccceechHHHHHHHHcCCHHHHH
Confidence 99999999999999986 69999999999999999999999999999999885 89999999999999999999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc--cCCCCCchHHHHHHHHHhcCCchHHHHHHHHHH-hCCC
Q 007517 385 KLIEAMPFEPDAIIWGSLLGACRTHMKLDLAEVAAKKLLQ--LEPKNAGPYILLSNIYASQGRFHDVAELRKNMR-KRNV 461 (600)
Q Consensus 385 ~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~-~~g~ 461 (600)
++|+++ .||..+|++|+.+|.++|+.++|.++|++|.+ ..|+. .+|..++.+|++.|++++|.++|+.|. +.|+
T Consensus 545 ~~f~~~--~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~-~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi 621 (857)
T PLN03077 545 NQFNSH--EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDE-VTFISLLCACSRSGMVTQGLEYFHSMEEKYSI 621 (857)
T ss_pred HHHHhc--CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCc-ccHHHHHHHHhhcChHHHHHHHHHHHHHHhCC
Confidence 999998 79999999999999999999999999999987 45665 899999999999999999999999999 6787
Q ss_pred ccCCceeEEEeCCEEEEEEcCCCCCCCChHHHHHHHHHHHHHHHHcCcccCCCccccccchhhhhhhhhhhhHHHH-HHH
Q 007517 462 IKPPGCSWIEVEKKVHMFTGRDCVSHPEHPMIMRMLEKIGGLLREAGYCPDSSFVLHDVDEEEKVHSLRYHSEKLA-VAY 540 (600)
Q Consensus 462 ~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~~~~~~l~~l~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~e~la-~~~ 540 (600)
.|+... ..+..|.. .+ .+.++++.+.+++++..||...|..-+..+...+.+ .-.|+.+ ..+
T Consensus 622 ~P~~~~----------y~~lv~~l--~r----~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~-e~~e~~a~~l~ 684 (857)
T PLN03077 622 TPNLKH----------YACVVDLL--GR----AGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHV-ELGELAAQHIF 684 (857)
T ss_pred CCchHH----------HHHHHHHH--Hh----CCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCh-HHHHHHHHHHH
Confidence 654421 00010100 00 012456667777788999988774444333221111 1112222 233
Q ss_pred hhcCCCCCCcEEEEccccccccchhhHHHHhhhhCceEEE-------ecCCcccccCCCccC
Q 007517 541 GLVKLPEGVPIRVMKNLRVCGDCHSAIKLISKVMGREIIL-------RDANRFHHFKDGLCS 595 (600)
Q Consensus 541 ~~~~~~~~~~~~~~~~l~~c~~~~~~~~~~s~~~~~~~~~-------~~~~~~h~~~~g~cs 595 (600)
.+.+...+..+.+..-....|+-.++.+....|..+.+-. --.+..|-|..|--|
T Consensus 685 ~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~ 746 (857)
T PLN03077 685 ELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDES 746 (857)
T ss_pred hhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCC
Confidence 4555544444444444567899999999998887773221 113567888766544
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-63 Score=542.86 Aligned_cols=460 Identities=15% Similarity=0.236 Sum_probs=426.1
Q ss_pred CCcchHHHHHHHHHhCCChHHHHHHHhhCCCCCcchHHHHHHHHHcCCCHHHHHHHHccCC----CCCcchHHHHHHHHH
Q 007517 4 RNVVSWTAMVRGYVEEGMITEAGTLFWQMPEKNVVSWTVMLGGFIRDSRIDDARRLFDMMP----EKDVVAQTNMVLGYC 79 (600)
Q Consensus 4 p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~----~~~~~~~~~li~~~~ 79 (600)
|+...++.++.+|.+.|.+++|+++|+.|..||..+|+.++.+|++.|++++|.++|+.|. .||..+|++||.+|+
T Consensus 404 ~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~ 483 (1060)
T PLN03218 404 MDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCA 483 (1060)
T ss_pred chHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 4555677788889999999999999999999999999999999999999999999999997 589999999999999
Q ss_pred hcCChHHHHHHHhhCC----CCCcccHHHHHHHHHhCCChHHHHHHHhhcCC----CCcchHHHHHHHHhcCCChHHHHH
Q 007517 80 QDGRVDEGREIFDEMP----KKNVISWTTMISGYVNNNRIDVARKLFEVMPE----KNEVSWTAMLMGYTQCGRIQDAWE 151 (600)
Q Consensus 80 ~~g~~~~A~~~~~~m~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----p~~~t~~~ll~~~~~~g~~~~a~~ 151 (600)
+.|++++|.++|++|. .||..+||+||.+|++.|++++|+++|++|.+ ||..||+.++.+|++.|++++|.+
T Consensus 484 k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~ 563 (1060)
T PLN03218 484 KSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFD 563 (1060)
T ss_pred hCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 9999999999999998 48999999999999999999999999999976 999999999999999999999999
Q ss_pred HHhhCC------CCCccchhHHHHHHHhcCCHHHHHHHHHhcccC----ChhhHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 007517 152 LFKAMP------MKSVVASNSMILGLGQNGEVQKARVVFDQMREK----DDATWSGMIKVYERKGYELEVIDLFTLMQKE 221 (600)
Q Consensus 152 ~~~~~~------~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 221 (600)
+|++|. .+|..+|++||.+|+++|++++|.++|++|.+. +..+||.+|.+|++.|++++|+++|++|.+.
T Consensus 564 lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~ 643 (1060)
T PLN03218 564 VLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKK 643 (1060)
T ss_pred HHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Confidence 999995 578899999999999999999999999999854 6799999999999999999999999999999
Q ss_pred CCccCchhHhhHHHHHhhhcchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHhhhhhcC----CCCHHHHH
Q 007517 222 GVRVNFPSLISVLSVCASLASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFA----SKDIVMWN 297 (600)
Q Consensus 222 g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~----~~~~~~~~ 297 (600)
|+.||..||+.++.+|++.|++++|.++|+.|.+.|+.|+..+|++||.+|+++|++++|.++|++|. .||+++||
T Consensus 644 Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN 723 (1060)
T PLN03218 644 GVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMN 723 (1060)
T ss_pred CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999995 58999999
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHh--
Q 007517 298 SIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLG-- 375 (600)
Q Consensus 298 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~-- 375 (600)
+||.+|++.|++++|+++|++|...|+.||..||+.++.+|++.|++++|.++|+.|.+. |+.||..+|++++.++.
T Consensus 724 ~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~-Gi~pd~~tynsLIglc~~~ 802 (1060)
T PLN03218 724 ALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKED-GIKPNLVMCRCITGLCLRR 802 (1060)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999885 89999999999998743
Q ss_pred --hcC-------------------CHHHHHHHHHhC---CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc-cCCCCC
Q 007517 376 --RAG-------------------QVEDAMKLIEAM---PFEPDAIIWGSLLGACRTHMKLDLAEVAAKKLLQ-LEPKNA 430 (600)
Q Consensus 376 --~~g-------------------~~~~A~~~~~~m---~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-~~p~~~ 430 (600)
+++ ..++|..+|++| ++.||..+|+.++.++...+..+.+..+++.+.. -.+.+.
T Consensus 803 y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~ 882 (1060)
T PLN03218 803 FEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQ 882 (1060)
T ss_pred HHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcch
Confidence 332 246799999999 8999999999999888888888888888877653 344556
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHHHHhCCCccCCc
Q 007517 431 GPYILLSNIYASQGRFHDVAELRKNMRKRNVIKPPG 466 (600)
Q Consensus 431 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~ 466 (600)
.+|..|++.+.+. .++|..++++|.+.|+.++..
T Consensus 883 ~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 883 SNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred hhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCcc
Confidence 8899999988332 368999999999999986654
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-61 Score=530.33 Aligned_cols=495 Identities=15% Similarity=0.206 Sum_probs=446.5
Q ss_pred CCCcchHHHHHHHHHhCCChHHHHHHHhhCCCC-----CcchHHHHHHHHHcCCCHHHHHHHHccCCCCCcchHHHHHHH
Q 007517 3 ERNVVSWTAMVRGYVEEGMITEAGTLFWQMPEK-----NVVSWTVMLGGFIRDSRIDDARRLFDMMPEKDVVAQTNMVLG 77 (600)
Q Consensus 3 ~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~-----~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~ 77 (600)
.+|...|..++..|++.|++++|+++|+.|..+ +..+++.++..|.+.|.+++|.++|+.|..||..+|+.||.+
T Consensus 367 ~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a 446 (1060)
T PLN03218 367 KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSV 446 (1060)
T ss_pred CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 467788999999999999999999999999854 455677888999999999999999999999999999999999
Q ss_pred HHhcCChHHHHHHHhhCCC----CCcccHHHHHHHHHhCCChHHHHHHHhhcCC----CCcchHHHHHHHHhcCCChHHH
Q 007517 78 YCQDGRVDEGREIFDEMPK----KNVISWTTMISGYVNNNRIDVARKLFEVMPE----KNEVSWTAMLMGYTQCGRIQDA 149 (600)
Q Consensus 78 ~~~~g~~~~A~~~~~~m~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----p~~~t~~~ll~~~~~~g~~~~a 149 (600)
|++.|+++.|.++|++|.+ ||..+||+||.+|++.|++++|.++|++|.+ ||..||+.+|.+|++.|++++|
T Consensus 447 ~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeA 526 (1060)
T PLN03218 447 CASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKA 526 (1060)
T ss_pred HHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHH
Confidence 9999999999999999975 8999999999999999999999999999986 9999999999999999999999
Q ss_pred HHHHhhCC----CCCccchhHHHHHHHhcCCHHHHHHHHHhcc------cCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Q 007517 150 WELFKAMP----MKSVVASNSMILGLGQNGEVQKARVVFDQMR------EKDDATWSGMIKVYERKGYELEVIDLFTLMQ 219 (600)
Q Consensus 150 ~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 219 (600)
.++|+.|. .||..+|+.||.+|++.|++++|.++|++|. .||.++|+++|.+|++.|++++|.++|++|.
T Consensus 527 l~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~ 606 (1060)
T PLN03218 527 FGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIH 606 (1060)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 99999997 7899999999999999999999999999995 4699999999999999999999999999999
Q ss_pred HcCCccCchhHhhHHHHHhhhcchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHhhhhhcCC----CCHHH
Q 007517 220 KEGVRVNFPSLISVLSVCASLASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFAS----KDIVM 295 (600)
Q Consensus 220 ~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~----~~~~~ 295 (600)
+.|+.|+..+|+.++.+|++.|++++|..+|..|.+.|+.||..+|++++++|++.|++++|.++|+.|.+ +|..+
T Consensus 607 e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~t 686 (1060)
T PLN03218 607 EYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVS 686 (1060)
T ss_pred HcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999975 79999
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHh
Q 007517 296 WNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLG 375 (600)
Q Consensus 296 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~ 375 (600)
|++||.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+. |+.||..+|++++.+|.
T Consensus 687 ynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~-Gi~Pd~~Ty~sLL~a~~ 765 (1060)
T PLN03218 687 YSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRL-GLCPNTITYSILLVASE 765 (1060)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999875 89999999999999999
Q ss_pred hcCCHHHHHHHHHhC---CCCCCHHHHHHHHHHHHH-----------------------cCCHHHHHHHHHHHhcc--CC
Q 007517 376 RAGQVEDAMKLIEAM---PFEPDAIIWGSLLGACRT-----------------------HMKLDLAEVAAKKLLQL--EP 427 (600)
Q Consensus 376 ~~g~~~~A~~~~~~m---~~~p~~~~~~~ll~~~~~-----------------------~g~~~~a~~~~~~~~~~--~p 427 (600)
+.|++++|.+++++| ++.||..+|++|++.|.+ .+..+.|..+|++|.+. .|
T Consensus 766 k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~P 845 (1060)
T PLN03218 766 RKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLP 845 (1060)
T ss_pred HCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCC
Confidence 999999999999999 889999999999977643 12346799999999984 46
Q ss_pred CCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCCccCCceeEEEeCCEEEEEEcCCCCCCCChHHHHHHHHHHHHHHHHc
Q 007517 428 KNAGPYILLSNIYASQGRFHDVAELRKNMRKRNVIKPPGCSWIEVEKKVHMFTGRDCVSHPEHPMIMRMLEKIGGLLREA 507 (600)
Q Consensus 428 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 507 (600)
+ ..+|..++..+...+.++.+..+++.|...+..+..... ...++.+ + . + ....-.+++.|.+.
T Consensus 846 d-~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y----~~Li~g~--~--~-~------~~~A~~l~~em~~~ 909 (1060)
T PLN03218 846 T-MEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNL----STLVDGF--G--E-Y------DPRAFSLLEEAASL 909 (1060)
T ss_pred C-HHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhh----HHHHHhh--c--c-C------hHHHHHHHHHHHHc
Confidence 5 488999988888888888888888887765543322211 1111111 1 1 1 12355788999999
Q ss_pred CcccCCC
Q 007517 508 GYCPDSS 514 (600)
Q Consensus 508 g~~p~~~ 514 (600)
|+.|+.+
T Consensus 910 Gi~p~~~ 916 (1060)
T PLN03218 910 GVVPSVS 916 (1060)
T ss_pred CCCCCcc
Confidence 9999876
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-58 Score=498.33 Aligned_cols=477 Identities=21% Similarity=0.302 Sum_probs=413.3
Q ss_pred CCcccHHHHHHHHHhCCChHHHHHHHhhcCC-----CCcchHHHHHHHHhcCCChHHHHHHHhhCC----CCCccchhHH
Q 007517 97 KNVISWTTMISGYVNNNRIDVARKLFEVMPE-----KNEVSWTAMLMGYTQCGRIQDAWELFKAMP----MKSVVASNSM 167 (600)
Q Consensus 97 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~l 167 (600)
++..+|+.+|.+|.+.|++++|+++|+.|.. ||..||+.++.+|++.++++.|.++|..+. .+|..++|+|
T Consensus 85 ~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~L 164 (697)
T PLN03081 85 KSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRV 164 (697)
T ss_pred CCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHH
Confidence 5778999999999999999999999999975 789999999999999999999999999997 7899999999
Q ss_pred HHHHHhcCCHHHHHHHHHhcccCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCchhHhhHHHHHhhhcchHHHH
Q 007517 168 ILGLGQNGEVQKARVVFDQMREKDDATWSGMIKVYERKGYELEVIDLFTLMQKEGVRVNFPSLISVLSVCASLASLDHGR 247 (600)
Q Consensus 168 i~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~ 247 (600)
+++|+++|++++|.++|++|+++|+++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|+..|..+.+.
T Consensus 165 i~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~ 244 (697)
T PLN03081 165 LLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQ 244 (697)
T ss_pred HHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHhhhhhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 007517 248 QVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFASKDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPD 327 (600)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 327 (600)
++|..+.+.|+.+|..++++|+++|+++|++++|.++|++|..+|+++||+||.+|++.|++++|+++|++|.+.|+.||
T Consensus 245 ~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd 324 (697)
T PLN03081 245 QLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSID 324 (697)
T ss_pred HHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 007517 328 DVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAMPFEPDAIIWGSLLGACR 407 (600)
Q Consensus 328 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~ 407 (600)
..||+.++.+|++.|++++|.+++..|.+. |++|+..+|++|+++|+++|++++|.++|++|. +||..+|++|+.+|.
T Consensus 325 ~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~-g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~-~~d~~t~n~lI~~y~ 402 (697)
T PLN03081 325 QFTFSIMIRIFSRLALLEHAKQAHAGLIRT-GFPLDIVANTALVDLYSKWGRMEDARNVFDRMP-RKNLISWNALIAGYG 402 (697)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHh-CCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC-CCCeeeHHHHHHHHH
Confidence 999999999999999999999999999986 899999999999999999999999999999997 689999999999999
Q ss_pred HcCCHHHHHHHHHHHhc--cCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHh-CCCccCCceeEEEeCCEEEEEEcCCC
Q 007517 408 THMKLDLAEVAAKKLLQ--LEPKNAGPYILLSNIYASQGRFHDVAELRKNMRK-RNVIKPPGCSWIEVEKKVHMFTGRDC 484 (600)
Q Consensus 408 ~~g~~~~a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-~g~~~~~~~s~~~~~~~~~~f~~~~~ 484 (600)
++|+.++|..+|++|.+ ..|+. .+|..++.+|.+.|++++|.++|+.|.+ .|+.++... + ... +.+..
T Consensus 403 ~~G~~~~A~~lf~~M~~~g~~Pd~-~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~-y---~~l----i~~l~ 473 (697)
T PLN03081 403 NHGRGTKAVEMFERMIAEGVAPNH-VTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMH-Y---ACM----IELLG 473 (697)
T ss_pred HcCCHHHHHHHHHHHHHhCCCCCH-HHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccc-h---HhH----HHHHH
Confidence 99999999999999987 45655 8999999999999999999999999985 577654321 1 000 11101
Q ss_pred CCCCChHHHHHHHHHHHHHHHHcCcccCCCccccccchhhhhhhh---hhhhHHHHHHHhhcCCCCCCcEEEEccccccc
Q 007517 485 VSHPEHPMIMRMLEKIGGLLREAGYCPDSSFVLHDVDEEEKVHSL---RYHSEKLAVAYGLVKLPEGVPIRVMKNLRVCG 561 (600)
Q Consensus 485 ~~~~~~~~~~~~l~~l~~~~~~~g~~p~~~~~~~~~~~~~~~~~~---~~~~e~la~~~~~~~~~~~~~~~~~~~l~~c~ 561 (600)
. .+. ++++.+.+++.++.|+...|..-+..+.+.+.+ ....++ .+++.+...+..+.+++-+..+|
T Consensus 474 r-~G~-------~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~---l~~~~p~~~~~y~~L~~~y~~~G 542 (697)
T PLN03081 474 R-EGL-------LDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEK---LYGMGPEKLNNYVVLLNLYNSSG 542 (697)
T ss_pred h-cCC-------HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHH---HhCCCCCCCcchHHHHHHHHhCC
Confidence 1 222 455566677889999988774433333322221 111222 24444443444556667788999
Q ss_pred cchhhHHHHhhhhCceEEE-------ecCCcccccCCCccC
Q 007517 562 DCHSAIKLISKVMGREIIL-------RDANRFHHFKDGLCS 595 (600)
Q Consensus 562 ~~~~~~~~~s~~~~~~~~~-------~~~~~~h~~~~g~cs 595 (600)
+..+|.++..+|..+.+-. --.+..|.|-.|-.+
T Consensus 543 ~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~ 583 (697)
T PLN03081 543 RQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRL 583 (697)
T ss_pred CHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCC
Confidence 9999999999999886532 223456777766443
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-29 Score=282.68 Aligned_cols=449 Identities=12% Similarity=0.090 Sum_probs=321.6
Q ss_pred CcchHHHHHHHHHhCCChHHHHHHHhhCCC---CCcchHHHHHHHHHcCCCHHHHHHHHccCC---CCCcchHHHHHHHH
Q 007517 5 NVVSWTAMVRGYVEEGMITEAGTLFWQMPE---KNVVSWTVMLGGFIRDSRIDDARRLFDMMP---EKDVVAQTNMVLGY 78 (600)
Q Consensus 5 ~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~ 78 (600)
+...|..+...+...|++++|++.|+.+.. ........++..+.+.|++++|.++++.+. .++..+|..+...|
T Consensus 396 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 475 (899)
T TIGR02917 396 NAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIY 475 (899)
T ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 445677777788888888888888877662 233455666777778888888888887776 23566777777888
Q ss_pred HhcCChHHHHHHHhhCCC---CCcccHHHHHHHHHhCCChHHHHHHHhhcCC--C-CcchHHHHHHHHhcCCChHHHHHH
Q 007517 79 CQDGRVDEGREIFDEMPK---KNVISWTTMISGYVNNNRIDVARKLFEVMPE--K-NEVSWTAMLMGYTQCGRIQDAWEL 152 (600)
Q Consensus 79 ~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--p-~~~t~~~ll~~~~~~g~~~~a~~~ 152 (600)
...|++++|.+.|+++.+ .+...+..+...+...|++++|.+.|+++.. | +..++..+...+...|+.++|...
T Consensus 476 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 555 (899)
T TIGR02917 476 LGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAW 555 (899)
T ss_pred HhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHH
Confidence 888888888888877643 3445666777777788888888888877766 3 445667777777778888888887
Q ss_pred HhhCC---CCCccchhHHHHHHHhcCCHHHHHHHHHhccc---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCccC
Q 007517 153 FKAMP---MKSVVASNSMILGLGQNGEVQKARVVFDQMRE---KDDATWSGMIKVYERKGYELEVIDLFTLMQKEGVRVN 226 (600)
Q Consensus 153 ~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 226 (600)
+..+. +.+...+..++..|.+.|++++|..+++++.. .+...|..+...|...|++++|+..|+++.+.. +.+
T Consensus 556 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~ 634 (899)
T TIGR02917 556 LEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDS 634 (899)
T ss_pred HHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCC
Confidence 77775 44555666777778888888888888777753 256677777788888888888888887776643 234
Q ss_pred chhHhhHHHHHhhhcchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHhhhhhcCC---CCHHHHHHHHHHH
Q 007517 227 FPSLISVLSVCASLASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFAS---KDIVMWNSIISGY 303 (600)
Q Consensus 227 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~ 303 (600)
...+..+...+...|++++|..++..+.+.. +.+...+..++..+.+.|++++|.++++.+.. .+...|..+...+
T Consensus 635 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 713 (899)
T TIGR02917 635 ALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLY 713 (899)
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHH
Confidence 4556667777777788888888877777654 44566777777777778888888777777654 3556677777777
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHH
Q 007517 304 AQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDA 383 (600)
Q Consensus 304 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 383 (600)
...|++++|++.|+++... .|+..++..+..++...|+.++|.+.++.+.+. .+.+...+..+...|.+.|++++|
T Consensus 714 ~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~g~~~~A 789 (899)
T TIGR02917 714 LRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASGNTAEAVKTLEAWLKT--HPNDAVLRTALAELYLAQKDYDKA 789 (899)
T ss_pred HHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCcCHHHH
Confidence 7777788888877777764 355566666777777777777777777777664 245667777777777777777777
Q ss_pred HHHHHhC-CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 007517 384 MKLIEAM-PF-EPDAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMRKRN 460 (600)
Q Consensus 384 ~~~~~~m-~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 460 (600)
.+.|+++ .. +++...+..+...+...|+ .+|+..++++++..|+++..+..++.+|...|++++|.++++++.+.+
T Consensus 790 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~ 867 (899)
T TIGR02917 790 IKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIA 867 (899)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 7777776 22 3356667777777777777 667777777777777777777777777777777777777777777654
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.8e-28 Score=278.71 Aligned_cols=449 Identities=13% Similarity=0.085 Sum_probs=389.6
Q ss_pred CCcchHHHHHHHHHhCCChHHHHHHHhhCCC---CCcchHHHHHHHHHcCCCHHHHHHHHccCCC---CCcchHHHHHHH
Q 007517 4 RNVVSWTAMVRGYVEEGMITEAGTLFWQMPE---KNVVSWTVMLGGFIRDSRIDDARRLFDMMPE---KDVVAQTNMVLG 77 (600)
Q Consensus 4 p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~ 77 (600)
.+...|+.+...+.+.|++++|.+.|+++.. .+...+..+...+...|++++|.+.|+.+.+ .+...+..++..
T Consensus 361 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~ 440 (899)
T TIGR02917 361 DDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILS 440 (899)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHH
Confidence 4567889999999999999999999998873 3556788888899999999999999998873 234566778889
Q ss_pred HHhcCChHHHHHHHhhCCC---CCcccHHHHHHHHHhCCChHHHHHHHhhcCC--CC-cchHHHHHHHHhcCCChHHHHH
Q 007517 78 YCQDGRVDEGREIFDEMPK---KNVISWTTMISGYVNNNRIDVARKLFEVMPE--KN-EVSWTAMLMGYTQCGRIQDAWE 151 (600)
Q Consensus 78 ~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--p~-~~t~~~ll~~~~~~g~~~~a~~ 151 (600)
|.+.|++++|..+++++.. ++..+|+.+...+...|++++|.+.|+++.+ |+ ...+..+...+...|++++|.+
T Consensus 441 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 520 (899)
T TIGR02917 441 YLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQ 520 (899)
T ss_pred HHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHH
Confidence 9999999999999998865 4667899999999999999999999999877 43 4567788888999999999999
Q ss_pred HHhhCC---CCCccchhHHHHHHHhcCCHHHHHHHHHhcccC---ChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCcc
Q 007517 152 LFKAMP---MKSVVASNSMILGLGQNGEVQKARVVFDQMREK---DDATWSGMIKVYERKGYELEVIDLFTLMQKEGVRV 225 (600)
Q Consensus 152 ~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 225 (600)
.++.+. +.+..++..+...|.+.|+.++|...|+++... +...+..++..|...|++++|+.+++++.... +.
T Consensus 521 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~ 599 (899)
T TIGR02917 521 RFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PD 599 (899)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CC
Confidence 999887 566778888999999999999999999998543 56678889999999999999999999998753 45
Q ss_pred CchhHhhHHHHHhhhcchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHhhhhhcCC---CCHHHHHHHHHH
Q 007517 226 NFPSLISVLSVCASLASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFAS---KDIVMWNSIISG 302 (600)
Q Consensus 226 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~ 302 (600)
+..++..+..++...|++++|...+..+.+.. +.+...+..+...|.+.|++++|...|+++.. .+..+|..++..
T Consensus 600 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 678 (899)
T TIGR02917 600 SPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQL 678 (899)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 67788899999999999999999999998865 45677888999999999999999999988754 467899999999
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHH
Q 007517 303 YAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVED 382 (600)
Q Consensus 303 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 382 (600)
+...|++++|.++++.+.+.+ +++...+..+...+...|++++|.+.|+.+... .|+..++..++.+|.+.|++++
T Consensus 679 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~ 754 (899)
T TIGR02917 679 LLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKR---APSSQNAIKLHRALLASGNTAE 754 (899)
T ss_pred HHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh---CCCchHHHHHHHHHHHCCCHHH
Confidence 999999999999999998874 456667788888899999999999999998874 4666888889999999999999
Q ss_pred HHHHHHhC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007517 383 AMKLIEAM--PFEPDAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMRKR 459 (600)
Q Consensus 383 A~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 459 (600)
|.+.++++ ..+.+...+..+...|...|+.++|...++++++..|+++..+..++.++...|+ .+|..+++++.+.
T Consensus 755 A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~ 832 (899)
T TIGR02917 755 AVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKL 832 (899)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhh
Confidence 99999887 3234677888899999999999999999999999999999999999999999999 8899999988764
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PF14432 DYW_deaminase: DYW family of nucleic acid deaminases | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.1e-32 Score=219.14 Aligned_cols=106 Identities=66% Similarity=1.114 Sum_probs=96.5
Q ss_pred ceeEEEeCCEEEEEEcCCCCCCCChHHHHHHHHHHHHHHHHcCcccCCCccccccchhhh--------hhhhhhhhHHHH
Q 007517 466 GCSWIEVEKKVHMFTGRDCVSHPEHPMIMRMLEKIGGLLREAGYCPDSSFVLHDVDEEEK--------VHSLRYHSEKLA 537 (600)
Q Consensus 466 ~~s~~~~~~~~~~f~~~~~~~~~~~~~~~~~l~~l~~~~~~~g~~p~~~~~~~~~~~~~~--------~~~~~~~~e~la 537 (600)
|+||+++ |.|++||.+ ||+. ++...+...||.|++..++|+++++++ +..+..||||||
T Consensus 2 ~~~w~~~----h~F~sgd~s-hp~~--------~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~d~~~~~~~~~~HSEKlA 68 (116)
T PF14432_consen 2 GCSWIEV----HSFVSGDRS-HPQS--------ELINKMKEEGYVPDTKEVGHDVDEEEKHDYDEEEKEESLCYHSEKLA 68 (116)
T ss_pred CCCccce----EEEEeCCCc-CccH--------HHHHHHHHcCCcchhhhhCCCchhhhhhhcccccchhhhhccHHHHH
Confidence 6899876 999999999 9987 455667788999999999998887765 557799999999
Q ss_pred HHHhhcCCCCCCcEEEEccc-cccccchhhHHHHhhhhCceEEEecCCcccccC
Q 007517 538 VAYGLVKLPEGVPIRVMKNL-RVCGDCHSAIKLISKVMGREIILRDANRFHHFK 590 (600)
Q Consensus 538 ~~~~~~~~~~~~~~~~~~~l-~~c~~~~~~~~~~s~~~~~~~~~~~~~~~h~~~ 590 (600)
+||||+++ ||+||+ |+|+|||+++|+||++++|+|+|||.+|||||+
T Consensus 69 iafgli~~------~vvkn~~RvC~DCH~~~K~iS~~~~ReIiVRD~~rfHhFk 116 (116)
T PF14432_consen 69 IAFGLINT------RVVKNLKRVCGDCHSFIKFISKITGREIIVRDSNRFHHFK 116 (116)
T ss_pred HHhcccce------eEEecCCccchHHHHHHHHHHHHHCeEEEEeCCCeeeeCC
Confidence 99999998 899999 999999999999999999999999999999997
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.8e-20 Score=210.52 Aligned_cols=445 Identities=13% Similarity=0.089 Sum_probs=248.0
Q ss_pred CcchHHHHHHHHHhCCChHHHHHHHhhCCC--CCc-ch----------------HHHHHHHHHcCCCHHHHHHHHccCCC
Q 007517 5 NVVSWTAMVRGYVEEGMITEAGTLFWQMPE--KNV-VS----------------WTVMLGGFIRDSRIDDARRLFDMMPE 65 (600)
Q Consensus 5 ~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~--~~~-~~----------------~~~ll~~~~~~g~~~~A~~~~~~m~~ 65 (600)
|+..+..++..+.+.|+.++|.+.+++..+ |+. .. ...+...+.+.|++++|.+.|+.+.+
T Consensus 61 ~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~ 140 (1157)
T PRK11447 61 NPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASYDKLFN 140 (1157)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHcc
Confidence 455677777777888888888888877762 222 11 12233456777888888888887764
Q ss_pred CCcchHH---HHH-HHHHhcCChHHHHHHHhhCCC--C-CcccHHHHHHHHHhCCChHHHHHHHhhcCC-CCcc------
Q 007517 66 KDVVAQT---NMV-LGYCQDGRVDEGREIFDEMPK--K-NVISWTTMISGYVNNNRIDVARKLFEVMPE-KNEV------ 131 (600)
Q Consensus 66 ~~~~~~~---~li-~~~~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-p~~~------ 131 (600)
.++.... ... ......|+.++|++.|+++.+ | +...+..+...+...|+.++|+..|+++.. +...
T Consensus 141 ~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~ 220 (1157)
T PRK11447 141 GAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQL 220 (1157)
T ss_pred CCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHH
Confidence 3222111 111 112234778888888877765 2 344667777777778888888887776643 1100
Q ss_pred ----------------hHH----------------------------------HHHHHHhcCCChHHHHHHHhhCC---C
Q 007517 132 ----------------SWT----------------------------------AMLMGYTQCGRIQDAWELFKAMP---M 158 (600)
Q Consensus 132 ----------------t~~----------------------------------~ll~~~~~~g~~~~a~~~~~~~~---~ 158 (600)
.+. ....++...|++++|...++++. +
T Consensus 221 ~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~P 300 (1157)
T PRK11447 221 WYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRANP 300 (1157)
T ss_pred HHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 000 11223445566777777776665 3
Q ss_pred CCccchhHHHHHHHhcCCHHHHHHHHHhcccCCh-----hhHHHH------------HHHHHHcCChHHHHHHHHHHHHc
Q 007517 159 KSVVASNSMILGLGQNGEVQKARVVFDQMREKDD-----ATWSGM------------IKVYERKGYELEVIDLFTLMQKE 221 (600)
Q Consensus 159 ~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~-----~~~~~l------------i~~~~~~g~~~~A~~~~~~m~~~ 221 (600)
.+..++..|...|.+.|+.++|+..|++..+.++ ..|..+ ...+.+.|++++|+..|++....
T Consensus 301 ~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~ 380 (1157)
T PRK11447 301 KDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQV 380 (1157)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 4555666666677777777777777766653211 112211 23455667777777777776664
Q ss_pred CCccCchhHhhHHHHHhhhcchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHhhhhhcCCCC---------
Q 007517 222 GVRVNFPSLISVLSVCASLASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFASKD--------- 292 (600)
Q Consensus 222 g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~--------- 292 (600)
. +.+...+..+...+...|++++|.+.++.+.+.. +.+...+..+...|. .++.++|..+++.+....
T Consensus 381 ~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~ 457 (1157)
T PRK11447 381 D-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIER 457 (1157)
T ss_pred C-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 2 2233445555666666777777777777666643 222333333333332 123333333333322110
Q ss_pred ---HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHH-
Q 007517 293 ---IVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPD-DVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHY- 367 (600)
Q Consensus 293 ---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~- 367 (600)
...+..+...+...|++++|++.|++..+. .|+ ...+..+...+...|++++|...++.+.+.. +.+...+
T Consensus 458 ~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~--~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~--P~~~~~~~ 533 (1157)
T PRK11447 458 SLQNDRLAQQAEALENQGKWAQAAELQRQRLAL--DPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQK--PNDPEQVY 533 (1157)
T ss_pred HhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHH
Confidence 011222333344455555555555555543 333 2233444445555555555555555544321 1111111
Q ss_pred -------------------------------------------HHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHH
Q 007517 368 -------------------------------------------ACMVDLLGRAGQVEDAMKLIEAMPFEPDAIIWGSLLG 404 (600)
Q Consensus 368 -------------------------------------------~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~ 404 (600)
..+.+.+...|+.++|.++++.-| ++...+..+..
T Consensus 534 a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p--~~~~~~~~La~ 611 (1157)
T PRK11447 534 AYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQP--PSTRIDLTLAD 611 (1157)
T ss_pred HHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCC--CCchHHHHHHH
Confidence 123344555566666666665332 34445566677
Q ss_pred HHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007517 405 ACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMRK 458 (600)
Q Consensus 405 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 458 (600)
.+...|++++|+..++++++.+|+++..+..++.+|...|++++|.+.++...+
T Consensus 612 ~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~ 665 (1157)
T PRK11447 612 WAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPA 665 (1157)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 777778888888888887777777777777777777777888888777776654
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1e-19 Score=208.63 Aligned_cols=375 Identities=9% Similarity=0.011 Sum_probs=256.4
Q ss_pred HHHhcCChHHHHHHHhhCCC---CCcccHHHHHHHHHhCCChHHHHHHHhhcCC--CCcc---hH------------HHH
Q 007517 77 GYCQDGRVDEGREIFDEMPK---KNVISWTTMISGYVNNNRIDVARKLFEVMPE--KNEV---SW------------TAM 136 (600)
Q Consensus 77 ~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--p~~~---t~------------~~l 136 (600)
.+...|++++|+..|++..+ .+..++..|...|.+.|++++|+..|++..+ |+.. .+ ...
T Consensus 278 ~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~ 357 (1157)
T PRK11447 278 AAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQ 357 (1157)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHH
Confidence 34556777777777776543 2455666677777777777777777776655 4321 11 112
Q ss_pred HHHHhcCCChHHHHHHHhhCC---CCCccchhHHHHHHHhcCCHHHHHHHHHhcccC---ChhhHHH-------------
Q 007517 137 LMGYTQCGRIQDAWELFKAMP---MKSVVASNSMILGLGQNGEVQKARVVFDQMREK---DDATWSG------------- 197 (600)
Q Consensus 137 l~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~---~~~~~~~------------- 197 (600)
...+.+.|++++|...++++. +.+...+..+...|...|++++|++.|++..+. +...+..
T Consensus 358 g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A 437 (1157)
T PRK11447 358 GDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKA 437 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHH
Confidence 334556677777777777666 344445556666777777777777777666532 2222322
Q ss_pred -----------------------------HHHHHHHcCChHHHHHHHHHHHHcCCccC-chhHhhHHHHHhhhcchHHHH
Q 007517 198 -----------------------------MIKVYERKGYELEVIDLFTLMQKEGVRVN-FPSLISVLSVCASLASLDHGR 247 (600)
Q Consensus 198 -----------------------------li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~ 247 (600)
+...+...|++++|++.|++..+. .|+ ...+..+...+...|++++|.
T Consensus 438 ~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~--~P~~~~~~~~LA~~~~~~G~~~~A~ 515 (1157)
T PRK11447 438 LAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL--DPGSVWLTYRLAQDLRQAGQRSQAD 515 (1157)
T ss_pred HHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 333455667777777777777664 343 345556666777777888888
Q ss_pred HHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHhhhhhcCCC----CHH---------HHHHHHHHHHhcCChHHHHH
Q 007517 248 QVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFASK----DIV---------MWNSIISGYAQYGLGEKSLK 314 (600)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~----~~~---------~~~~li~~~~~~g~~~~A~~ 314 (600)
..++.+.+.. +.+......+...+.+.|+.++|...++.+... +.. .+..+...+...|+.++|+.
T Consensus 516 ~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~ 594 (1157)
T PRK11447 516 ALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEA 594 (1157)
T ss_pred HHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHH
Confidence 8777777643 334444444555566677777887777776532 111 12234566778888888888
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCC
Q 007517 315 VFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM-PFE 393 (600)
Q Consensus 315 ~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~ 393 (600)
+++. .+++...+..+...+...|+.++|...|+.+.+.. +.+...+..++.+|...|++++|.+.++.. ...
T Consensus 595 ~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~--P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~ 667 (1157)
T PRK11447 595 LLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE--PGNADARLGLIEVDIAQGDLAAARAQLAKLPATA 667 (1157)
T ss_pred HHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC
Confidence 8772 23444566677788899999999999999998742 446888999999999999999999999987 344
Q ss_pred C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCc------hHHHHHHHHHhcCCchHHHHHHHHHHh-CCC
Q 007517 394 P-DAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAG------PYILLSNIYASQGRFHDVAELRKNMRK-RNV 461 (600)
Q Consensus 394 p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~------~~~~l~~~~~~~g~~~~a~~~~~~m~~-~g~ 461 (600)
| +...+..+..++...|++++|..+++++++..|+++. .+..++.++...|++++|.+.++.... .|+
T Consensus 668 p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~~ 743 (1157)
T PRK11447 668 NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVASGI 743 (1157)
T ss_pred CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC
Confidence 5 4566777888889999999999999999988765543 456678999999999999999988753 344
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.4e-21 Score=185.88 Aligned_cols=432 Identities=12% Similarity=0.116 Sum_probs=344.5
Q ss_pred HHHHHHHhCCChHHHHHHHhhCCCCCc---chHHHHHHHHHcCCCHHHHHHHHccCC---CCCcchHHHHHHHHHhcCCh
Q 007517 11 AMVRGYVEEGMITEAGTLFWQMPEKNV---VSWTVMLGGFIRDSRIDDARRLFDMMP---EKDVVAQTNMVLGYCQDGRV 84 (600)
Q Consensus 11 ~ll~~~~~~g~~~~A~~~~~~m~~~~~---~~~~~ll~~~~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~ 84 (600)
.|..-..+.|++.+|.+--...-..|+ ...-.+-..+.+..+++....--.... .....+|..+.+.+-..|++
T Consensus 53 ~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~kerg~~ 132 (966)
T KOG4626|consen 53 ELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKERGQL 132 (966)
T ss_pred HHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHhchH
Confidence 344444566777777664332222211 122222234445555554333222222 22446788899999999999
Q ss_pred HHHHHHHhhCCC---CCcccHHHHHHHHHhCCChHHHHHHHhhcCC--CCcchH-HHHHHHHhcCCChHHHHHHHhhCC-
Q 007517 85 DEGREIFDEMPK---KNVISWTTMISGYVNNNRIDVARKLFEVMPE--KNEVSW-TAMLMGYTQCGRIQDAWELFKAMP- 157 (600)
Q Consensus 85 ~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--p~~~t~-~~ll~~~~~~g~~~~a~~~~~~~~- 157 (600)
++|..+++.+.+ ..+..|..+..++...|+.+.|.+.|.+..+ |+.+-. +.+....-..|++++|..-+.+.+
T Consensus 133 ~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~ 212 (966)
T KOG4626|consen 133 QDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYLKAIE 212 (966)
T ss_pred HHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHHHHHh
Confidence 999999998876 3567899999999999999999999999888 665533 334444556799999999888887
Q ss_pred --CCCccchhHHHHHHHhcCCHHHHHHHHHhcccCC---hhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCccC-chhHh
Q 007517 158 --MKSVVASNSMILGLGQNGEVQKARVVFDQMREKD---DATWSGMIKVYERKGYELEVIDLFTLMQKEGVRVN-FPSLI 231 (600)
Q Consensus 158 --~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~ 231 (600)
+.=..+|+.|...+-..|++..|+.-|++...-| ...|-.|...|...+.+++|+..|.+.... +|+ .+.+.
T Consensus 213 ~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l--rpn~A~a~g 290 (966)
T KOG4626|consen 213 TQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL--RPNHAVAHG 290 (966)
T ss_pred hCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc--CCcchhhcc
Confidence 3334678999999999999999999999987654 457888899999999999999999888764 554 56778
Q ss_pred hHHHHHhhhcchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHhhhhhcCC---CCHHHHHHHHHHHHhcCC
Q 007517 232 SVLSVCASLASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFAS---KDIVMWNSIISGYAQYGL 308 (600)
Q Consensus 232 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~ 308 (600)
.+...|-..|.++.|+..+++.++.. +.-+..|+.|..++-..|++.+|...|.+... ....+.+.|...|...|.
T Consensus 291 Nla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~ 369 (966)
T KOG4626|consen 291 NLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGK 369 (966)
T ss_pred ceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcc
Confidence 88888889999999999999999875 34467899999999999999999999998764 356788999999999999
Q ss_pred hHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCC-hHHHHHHHHHHhhcCCHHHHHHH
Q 007517 309 GEKSLKVFHEMFSSGVMPDD-VTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPK-TEHYACMVDLLGRAGQVEDAMKL 386 (600)
Q Consensus 309 ~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~ 386 (600)
+++|..+|....+ +.|.- ..++.|...+.+.|++++|...+++..+ ++|+ ...|+.+...|...|+.+.|.+.
T Consensus 370 ~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr---I~P~fAda~~NmGnt~ke~g~v~~A~q~ 444 (966)
T KOG4626|consen 370 IEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR---IKPTFADALSNMGNTYKEMGDVSAAIQC 444 (966)
T ss_pred chHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh---cCchHHHHHHhcchHHHHhhhHHHHHHH
Confidence 9999999999887 46664 4788899999999999999999998875 6787 78999999999999999999999
Q ss_pred HHhC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHH
Q 007517 387 IEAM-PFEPD-AIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVA 450 (600)
Q Consensus 387 ~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 450 (600)
+.+. .+.|. ....+.|.+.|...|+..+|+..++.+++++|+.|.+|..++.+..--.+|.+=.
T Consensus 445 y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D~d 510 (966)
T KOG4626|consen 445 YTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTDYD 510 (966)
T ss_pred HHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcccchH
Confidence 9887 66775 5678999999999999999999999999999999999999998887777776633
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.87 E-value=1e-18 Score=188.13 Aligned_cols=411 Identities=11% Similarity=0.005 Sum_probs=278.3
Q ss_pred HHHHHHHcCCCHHHHHHHHccCC--CCCcchHHHHHHHHHhcCChHHHHHHHhhCCC---CCcccHHHHHHHHHhCCChH
Q 007517 42 VMLGGFIRDSRIDDARRLFDMMP--EKDVVAQTNMVLGYCQDGRVDEGREIFDEMPK---KNVISWTTMISGYVNNNRID 116 (600)
Q Consensus 42 ~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~ 116 (600)
.....|.+.|++++|...|++.. .|+...|..+...|.+.|++++|+..+++..+ .+..+|..+..+|...|+++
T Consensus 132 ~~G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~ 211 (615)
T TIGR00990 132 EKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYA 211 (615)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHH
Confidence 44556667777777777777765 45666677777777777777777777776554 24456777777777777777
Q ss_pred HHHHHHhhcCC---CCcchHHHHHHHHhcCCChHHHHHHHhhCCCCCccchhHHHHHHHhcCCHHHHHHHHHhcccCChh
Q 007517 117 VARKLFEVMPE---KNEVSWTAMLMGYTQCGRIQDAWELFKAMPMKSVVASNSMILGLGQNGEVQKARVVFDQMREKDDA 193 (600)
Q Consensus 117 ~A~~~~~~m~~---p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~ 193 (600)
+|+.-|..... .+......++..+........+...+..- +.+...+..+.+ |........+..-++...+.+..
T Consensus 212 eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 289 (615)
T TIGR00990 212 DALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETK-PENLPSVTFVGN-YLQSFRPKPRPAGLEDSNELDEE 289 (615)
T ss_pred HHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCCCCHHHHHH-HHHHccCCcchhhhhcccccccc
Confidence 77776654433 11111111111111111112222222111 222233332222 22222222222212221111111
Q ss_pred ---hHHHHHHHH---HHcCChHHHHHHHHHHHHcC-CccC-chhHhhHHHHHhhhcchHHHHHHHHHHHHcCCCCchhhH
Q 007517 194 ---TWSGMIKVY---ERKGYELEVIDLFTLMQKEG-VRVN-FPSLISVLSVCASLASLDHGRQVHAQLVRCQFDVDVYVA 265 (600)
Q Consensus 194 ---~~~~li~~~---~~~g~~~~A~~~~~~m~~~g-~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 265 (600)
.+..+...+ ...+++++|++.|++....+ ..|+ ...+..+...+...|++++|...+...++.. +.....+
T Consensus 290 ~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~ 368 (615)
T TIGR00990 290 TGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSY 368 (615)
T ss_pred cccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHH
Confidence 111111111 23478999999999998765 2343 3456666677788999999999999998864 3346678
Q ss_pred HHHHHHHHHcCCHHHHHhhhhhcCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhcc
Q 007517 266 SVLITMYIKCGELVKGKLIFDNFAS---KDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPD-DVTLVGVLSACSYT 341 (600)
Q Consensus 266 ~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~ 341 (600)
..+...|...|++++|...|+.... .+...|..+...|...|++++|+..|++..+. .|+ ...+..+..++...
T Consensus 369 ~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l--~P~~~~~~~~la~~~~~~ 446 (615)
T TIGR00990 369 IKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL--DPDFIFSHIQLGVTQYKE 446 (615)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CccCHHHHHHHHHHHHHC
Confidence 8889999999999999999987654 46789999999999999999999999999875 454 45677777888999
Q ss_pred CCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCH-------H-HHHHHHHHHHHcCCH
Q 007517 342 GKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM-PFEPDA-------I-IWGSLLGACRTHMKL 412 (600)
Q Consensus 342 g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~-------~-~~~~ll~~~~~~g~~ 412 (600)
|++++|...|+...+. .+.+...|+.+..+|...|++++|.+.|++. .+.|+. . .++..+..+...|++
T Consensus 447 g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~ 524 (615)
T TIGR00990 447 GSIASSMATFRRCKKN--FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDF 524 (615)
T ss_pred CCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhH
Confidence 9999999999998874 2455888999999999999999999999986 333421 1 122222334456999
Q ss_pred HHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007517 413 DLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMRKR 459 (600)
Q Consensus 413 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 459 (600)
++|...++++++++|++...+..++.++...|++++|.+.+++..+.
T Consensus 525 ~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 525 IEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 99999999999999999888999999999999999999999988754
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1e-19 Score=177.65 Aligned_cols=412 Identities=13% Similarity=0.144 Sum_probs=336.3
Q ss_pred HHHHHHHHHcCCCHHHHHHHHccCCCCCc-chHHH--HHHHHHhcCChHHHHHHHhhCCC---CCcccHHHHHHHHHhCC
Q 007517 40 WTVMLGGFIRDSRIDDARRLFDMMPEKDV-VAQTN--MVLGYCQDGRVDEGREIFDEMPK---KNVISWTTMISGYVNNN 113 (600)
Q Consensus 40 ~~~ll~~~~~~g~~~~A~~~~~~m~~~~~-~~~~~--li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g 113 (600)
...|..-..+.|++.+|.+--..+-..|. .+-+. +-..+.+..+.++...--....+ .-..+|..+.+.+-..|
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~kerg 130 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKERG 130 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHhc
Confidence 34455566678889888886555443222 22222 22455566666654443222222 23468999999999999
Q ss_pred ChHHHHHHHhhcCC--C-CcchHHHHHHHHhcCCChHHHHHHHhhCCCCCc---cchhHHHHHHHhcCCHHHHHHHHHhc
Q 007517 114 RIDVARKLFEVMPE--K-NEVSWTAMLMGYTQCGRIQDAWELFKAMPMKSV---VASNSMILGLGQNGEVQKARVVFDQM 187 (600)
Q Consensus 114 ~~~~A~~~~~~m~~--p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~f~~~ 187 (600)
++++|+.+++.+.+ | ....|..+..++...|+.+.|.+.|.....-++ .+.+.+.+.....|++++|...+.+.
T Consensus 131 ~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYlkA 210 (966)
T KOG4626|consen 131 QLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYLKA 210 (966)
T ss_pred hHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHHHH
Confidence 99999999999988 4 467899999999999999999999998883333 34455667777899999999999887
Q ss_pred ccC---ChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCccC-chhHhhHHHHHhhhcchHHHHHHHHHHHHcCCCCchh
Q 007517 188 REK---DDATWSGMIKVYERKGYELEVIDLFTLMQKEGVRVN-FPSLISVLSVCASLASLDHGRQVHAQLVRCQFDVDVY 263 (600)
Q Consensus 188 ~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 263 (600)
.+- =.+.|+.|...+...|+.-.|+..|++.... .|+ ...|..+-..+...+.++.|...+.+..... +....
T Consensus 211 i~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-pn~A~ 287 (966)
T KOG4626|consen 211 IETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR-PNHAV 287 (966)
T ss_pred HhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-Ccchh
Confidence 653 3578999999999999999999999998763 555 3567888888888888999988888777654 44567
Q ss_pred hHHHHHHHHHHcCCHHHHHhhhhhcCC--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHh
Q 007517 264 VASVLITMYIKCGELVKGKLIFDNFAS--K-DIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDD-VTLVGVLSACS 339 (600)
Q Consensus 264 ~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~ 339 (600)
++..+...|...|.++-|...|++..+ | -...||.|..++-..|+..+|.+.|.+.... .|+. ...+.|...+.
T Consensus 288 a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l--~p~hadam~NLgni~~ 365 (966)
T KOG4626|consen 288 AHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRL--CPNHADAMNNLGNIYR 365 (966)
T ss_pred hccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHh--CCccHHHHHHHHHHHH
Confidence 777888889999999999999998865 3 4579999999999999999999999999874 5664 47888999999
Q ss_pred ccCCHHHHHHHHHHhHhcCCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHHHH
Q 007517 340 YTGKVKEGREIFESMKSKYLVEPK-TEHYACMVDLLGRAGQVEDAMKLIEAM-PFEPD-AIIWGSLLGACRTHMKLDLAE 416 (600)
Q Consensus 340 ~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~ 416 (600)
..|.+++|..+|....+- .|. ....+.|...|-..|++++|..-+++. .++|+ ...++.+...|...|+...|.
T Consensus 366 E~~~~e~A~~ly~~al~v---~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~ 442 (966)
T KOG4626|consen 366 EQGKIEEATRLYLKALEV---FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAI 442 (966)
T ss_pred HhccchHHHHHHHHHHhh---ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHH
Confidence 999999999999988763 454 677899999999999999999999988 78887 568999999999999999999
Q ss_pred HHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007517 417 VAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMRKR 459 (600)
Q Consensus 417 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 459 (600)
+.+.+++..+|.-..++..|+.+|-.+|+..+|..-++...+.
T Consensus 443 q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLkl 485 (966)
T KOG4626|consen 443 QCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKL 485 (966)
T ss_pred HHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHcc
Confidence 9999999999999999999999999999999999999988764
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.2e-17 Score=183.41 Aligned_cols=210 Identities=9% Similarity=0.011 Sum_probs=157.9
Q ss_pred HHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHhhhhhcCC--CCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 007517 244 DHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFAS--KDIVMWNSIISGYAQYGLGEKSLKVFHEMFS 321 (600)
Q Consensus 244 ~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 321 (600)
++|...+....... |+......+...+...|++++|...|+++.. ++...+..+...+.+.|+.++|...|++..+
T Consensus 493 ~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~ 570 (987)
T PRK09782 493 GVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQ 570 (987)
T ss_pred HHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 34444444443332 3333222334444578888888888876643 3445566677778888888888888888877
Q ss_pred CCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHH
Q 007517 322 SGVMPDDV-TLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM-PFEPD-AII 398 (600)
Q Consensus 322 ~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~ 398 (600)
.. |+.. .+..+.......|++++|...+++..+. .|+...|..+..++.+.|++++|.+.+++. ...|+ ...
T Consensus 571 l~--P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l---~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a 645 (987)
T PRK09782 571 RG--LGDNALYWWLHAQRYIPGQPELALNDLTRSLNI---APSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNY 645 (987)
T ss_pred cC--CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH
Confidence 53 4433 3333344555669999999999988763 577888999999999999999999999988 45564 667
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 007517 399 WGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMRKRN 460 (600)
Q Consensus 399 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 460 (600)
+..+..++...|+.++|+..++++++++|+++..+..++.+|...|++++|...+++..+..
T Consensus 646 ~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 646 QAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 78888889999999999999999999999999999999999999999999999999887643
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=4e-19 Score=181.59 Aligned_cols=290 Identities=13% Similarity=0.130 Sum_probs=210.6
Q ss_pred HHHhcCCHHHHHHHHHhcccC---ChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCccC---chhHhhHHHHHhhhcch
Q 007517 170 GLGQNGEVQKARVVFDQMREK---DDATWSGMIKVYERKGYELEVIDLFTLMQKEGVRVN---FPSLISVLSVCASLASL 243 (600)
Q Consensus 170 ~~~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~t~~~ll~~~~~~~~~ 243 (600)
.+...|++++|...|+++.+. +..+|..+...+...|++++|+..++.+...+..++ ..++..+...+...|++
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~ 123 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLL 123 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCH
Confidence 345566666666666666532 334566666666677777777777766665422111 13445556666666777
Q ss_pred HHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHhhhhhcCCCC--------HHHHHHHHHHHHhcCChHHHHHH
Q 007517 244 DHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFASKD--------IVMWNSIISGYAQYGLGEKSLKV 315 (600)
Q Consensus 244 ~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~--------~~~~~~li~~~~~~g~~~~A~~~ 315 (600)
+.|..++..+.+.. +.+..+++.++.+|.+.|++++|.+.|+.+...+ ...|..+...+.+.|++++|+..
T Consensus 124 ~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 202 (389)
T PRK11788 124 DRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARAL 202 (389)
T ss_pred HHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 77777777666542 3455667777777777777777777777664321 12455677788889999999999
Q ss_pred HHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCC--hHHHHHHHHHHhhcCCHHHHHHHHHhC-C
Q 007517 316 FHEMFSSGVMPD-DVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPK--TEHYACMVDLLGRAGQVEDAMKLIEAM-P 391 (600)
Q Consensus 316 ~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m-~ 391 (600)
|+++.+. .|+ ...+..+...+...|++++|.++++++.+. .|+ ...++.++.+|.+.|++++|.+.++++ .
T Consensus 203 ~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 277 (389)
T PRK11788 203 LKKALAA--DPQCVRASILLGDLALAQGDYAAAIEALERVEEQ---DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALE 277 (389)
T ss_pred HHHHHhH--CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9998875 344 446677778888899999999999998764 233 456788999999999999999999987 4
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHh---cCCchHHHHHHHHHHhCCCccCCc
Q 007517 392 FEPDAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYAS---QGRFHDVAELRKNMRKRNVIKPPG 466 (600)
Q Consensus 392 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~---~g~~~~a~~~~~~m~~~g~~~~~~ 466 (600)
..|+...+..+...+.+.|++++|..+++++++..|+++ .+..+...+.. .|+.+++..+++.|.++++.++|.
T Consensus 278 ~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~-~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 278 EYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLR-GFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred hCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHH-HHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 567777778888999999999999999999999999874 55555555443 568999999999999999998887
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.7e-18 Score=175.48 Aligned_cols=284 Identities=13% Similarity=0.100 Sum_probs=193.7
Q ss_pred HHHHhCCChHHHHHHHhhcCC--CC-cchHHHHHHHHhcCCChHHHHHHHhhCCC-CC------ccchhHHHHHHHhcCC
Q 007517 107 SGYVNNNRIDVARKLFEVMPE--KN-EVSWTAMLMGYTQCGRIQDAWELFKAMPM-KS------VVASNSMILGLGQNGE 176 (600)
Q Consensus 107 ~~~~~~g~~~~A~~~~~~m~~--p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~-~~------~~~~~~li~~~~~~g~ 176 (600)
..+...|++++|+..|.++.+ |+ ..++..+...+...|++++|..+++.+.. ++ ..++..+...|.+.|+
T Consensus 43 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~ 122 (389)
T PRK11788 43 LNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGL 122 (389)
T ss_pred HHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCC
Confidence 344566777777777777766 43 23555666666666666666666665551 11 1223444555555555
Q ss_pred HHHHHHHHHhccc---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCchhHhhHHHHHhhhcchHHHHHHHHHH
Q 007517 177 VQKARVVFDQMRE---KDDATWSGMIKVYERKGYELEVIDLFTLMQKEGVRVNFPSLISVLSVCASLASLDHGRQVHAQL 253 (600)
Q Consensus 177 ~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~ 253 (600)
+++|..+|+++.+ .+..+++.++..+.+.|++++|++.++.+.+.+..++..
T Consensus 123 ~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~------------------------- 177 (389)
T PRK11788 123 LDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRV------------------------- 177 (389)
T ss_pred HHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchH-------------------------
Confidence 5555555555543 233445555555555555555555555554432111000
Q ss_pred HHcCCCCchhhHHHHHHHHHHcCCHHHHHhhhhhcCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH
Q 007517 254 VRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFAS---KDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVT 330 (600)
Q Consensus 254 ~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 330 (600)
.....+..+...|.+.|++++|...|+++.+ .+...+..+...|.+.|++++|+++|+++.+.+..+...+
T Consensus 178 ------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 251 (389)
T PRK11788 178 ------EIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEV 251 (389)
T ss_pred ------HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHH
Confidence 0012345567778888899999888888754 3466788888999999999999999999987532222456
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHH-
Q 007517 331 LVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM-PFEPDAIIWGSLLGACRT- 408 (600)
Q Consensus 331 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~- 408 (600)
+..+..++...|++++|.+.++.+.+. .|+...+..++..|.+.|++++|.++++++ ...|+...+..++..+..
T Consensus 252 ~~~l~~~~~~~g~~~~A~~~l~~~~~~---~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~ 328 (389)
T PRK11788 252 LPKLMECYQALGDEAEGLEFLRRALEE---YPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAE 328 (389)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhc
Confidence 788889999999999999999998874 477777789999999999999999999876 667999999988887764
Q ss_pred --cCCHHHHHHHHHHHhc
Q 007517 409 --HMKLDLAEVAAKKLLQ 424 (600)
Q Consensus 409 --~g~~~~a~~~~~~~~~ 424 (600)
+|+.+++..+++++++
T Consensus 329 ~~~g~~~~a~~~~~~~~~ 346 (389)
T PRK11788 329 AEEGRAKESLLLLRDLVG 346 (389)
T ss_pred cCCccchhHHHHHHHHHH
Confidence 5688899999988886
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.83 E-value=6.9e-17 Score=174.05 Aligned_cols=411 Identities=12% Similarity=0.006 Sum_probs=294.9
Q ss_pred HHHHHHHHHhCCChHHHHHHHhhCC--CCCcchHHHHHHHHHcCCCHHHHHHHHccCCC---CCcchHHHHHHHHHhcCC
Q 007517 9 WTAMVRGYVEEGMITEAGTLFWQMP--EKNVVSWTVMLGGFIRDSRIDDARRLFDMMPE---KDVVAQTNMVLGYCQDGR 83 (600)
Q Consensus 9 ~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~ 83 (600)
+......+.+.|++++|+..|++.+ .|+...|..+..+|.+.|++++|.+.++...+ .+...|..+..+|...|+
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~ 209 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGK 209 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC
Confidence 4566778889999999999999977 57778899999999999999999999998873 345678888999999999
Q ss_pred hHHHHHHHhhCCCCC---cccHHHHHHHHHhCCChHHHHHHHhhcCCCCcchHHHHHHHHhcCCChHHHHHHHhhCCCCC
Q 007517 84 VDEGREIFDEMPKKN---VISWTTMISGYVNNNRIDVARKLFEVMPEKNEVSWTAMLMGYTQCGRIQDAWELFKAMPMKS 160 (600)
Q Consensus 84 ~~~A~~~~~~m~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 160 (600)
+++|..-|......+ ......++.-+........+...++.-. ++...+..+.. +...........-+......+
T Consensus 210 ~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 287 (615)
T TIGR00990 210 YADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKP-ENLPSVTFVGN-YLQSFRPKPRPAGLEDSNELD 287 (615)
T ss_pred HHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCCCCHHHHHH-HHHHccCCcchhhhhcccccc
Confidence 999998876543211 1111122221111111222333332221 22222222222 221111111111122222222
Q ss_pred ccchhHHHHHH------HhcCCHHHHHHHHHhcccC------ChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCccC-c
Q 007517 161 VVASNSMILGL------GQNGEVQKARVVFDQMREK------DDATWSGMIKVYERKGYELEVIDLFTLMQKEGVRVN-F 227 (600)
Q Consensus 161 ~~~~~~li~~~------~~~g~~~~A~~~f~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~ 227 (600)
......++..+ ...+++++|.+.|++..+. +...|+.+...+...|++++|+..|++.... .|+ .
T Consensus 288 ~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--~P~~~ 365 (615)
T TIGR00990 288 EETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL--DPRVT 365 (615)
T ss_pred cccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcH
Confidence 22222222222 2347899999999987642 4456888888999999999999999998875 454 4
Q ss_pred hhHhhHHHHHhhhcchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHhhhhhcCC---CCHHHHHHHHHHHH
Q 007517 228 PSLISVLSVCASLASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFAS---KDIVMWNSIISGYA 304 (600)
Q Consensus 228 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~ 304 (600)
.+|..+...+...|++++|...+..+++.. +.+..++..+...|...|++++|...|++... .+...|..+...+.
T Consensus 366 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~ 444 (615)
T TIGR00990 366 QSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQY 444 (615)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHH
Confidence 577788888899999999999999998875 55678899999999999999999999998754 36778888999999
Q ss_pred hcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCCh--------HHHHHHHHHHh
Q 007517 305 QYGLGEKSLKVFHEMFSSGVMPD-DVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKT--------EHYACMVDLLG 375 (600)
Q Consensus 305 ~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~--------~~~~~li~~~~ 375 (600)
+.|++++|+..|++..+. .|+ ...+..+..++...|++++|.+.|+..... .|+. ..++.....+.
T Consensus 445 ~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l---~p~~~~~~~~~~~l~~~a~~~~~ 519 (615)
T TIGR00990 445 KEGSIASSMATFRRCKKN--FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL---EKETKPMYMNVLPLINKALALFQ 519 (615)
T ss_pred HCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc---CCccccccccHHHHHHHHHHHHH
Confidence 999999999999999874 454 567888888999999999999999998763 2321 11222233445
Q ss_pred hcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC
Q 007517 376 RAGQVEDAMKLIEAM-PFEPD-AIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKN 429 (600)
Q Consensus 376 ~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 429 (600)
..|++++|.+++++. .+.|+ ...+..+...+...|++++|...++++.++.+..
T Consensus 520 ~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~ 575 (615)
T TIGR00990 520 WKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTE 575 (615)
T ss_pred HhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccH
Confidence 579999999999986 44564 5578899999999999999999999999987754
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.3e-16 Score=173.21 Aligned_cols=447 Identities=11% Similarity=0.048 Sum_probs=327.2
Q ss_pred CCcchHHHH-HHHHHhCCChHHHHHHHhhCCCC---CcchHHHHHHHHHc-CCCHHHHHHHHccCCCCCcchHHHHHHHH
Q 007517 4 RNVVSWTAM-VRGYVEEGMITEAGTLFWQMPEK---NVVSWTVMLGGFIR-DSRIDDARRLFDMMPEKDVVAQTNMVLGY 78 (600)
Q Consensus 4 p~~~~~~~l-l~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~ll~~~~~-~g~~~~A~~~~~~m~~~~~~~~~~li~~~ 78 (600)
|+..+.... ...|.+.|++++|++++..+.+. +..-...|..+|.. .++ +.+..++....+.|+..+.++...|
T Consensus 179 ~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~ala~~y 257 (987)
T PRK09782 179 PEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNTLSAAERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSRITYATAL 257 (987)
T ss_pred CCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHHHHHHHHH
Confidence 344444444 88999999999999999988843 33345566677777 466 8888887765567888899999999
Q ss_pred HhcCChHHHHHHHhhCCC-----CCcccH------------------------------HHHHHHHHhCCChHHHHHHHh
Q 007517 79 CQDGRVDEGREIFDEMPK-----KNVISW------------------------------TTMISGYVNNNRIDVARKLFE 123 (600)
Q Consensus 79 ~~~g~~~~A~~~~~~m~~-----~~~~~~------------------------------~~li~~~~~~g~~~~A~~~~~ 123 (600)
.+.|+.++|.+++++++. |...+| -.++..+.+.++++.+.++..
T Consensus 258 i~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (987)
T PRK09782 258 AYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLA 337 (987)
T ss_pred HHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhc
Confidence 999999999999998863 211111 122455566666665555532
Q ss_pred hcCC-------------------------------C-CcchHHHHHHHHhcCCChHHHHHHHhhCCC--CCc----cchh
Q 007517 124 VMPE-------------------------------K-NEVSWTAMLMGYTQCGRIQDAWELFKAMPM--KSV----VASN 165 (600)
Q Consensus 124 ~m~~-------------------------------p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~--~~~----~~~~ 165 (600)
--.. | +......+--.....|+.++|.+++....+ .+. ...+
T Consensus 338 ~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~ 417 (987)
T PRK09782 338 TLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMA 417 (987)
T ss_pred CCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHH
Confidence 1111 0 111111122224566888899999888873 222 2344
Q ss_pred HHHHHHHhcCC---HHHHHHH-------------------------HHhccc---C--ChhhHHHHHHHHHHcCChHHHH
Q 007517 166 SMILGLGQNGE---VQKARVV-------------------------FDQMRE---K--DDATWSGMIKVYERKGYELEVI 212 (600)
Q Consensus 166 ~li~~~~~~g~---~~~A~~~-------------------------f~~~~~---~--~~~~~~~li~~~~~~g~~~~A~ 212 (600)
-|+..|.+.+. ..+|..+ +..... . +...|..+..++.. +++++|+
T Consensus 418 ~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi 496 (987)
T PRK09782 418 RLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVAL 496 (987)
T ss_pred HHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHH
Confidence 67788888876 3333222 111111 1 45567777777776 8999999
Q ss_pred HHHHHHHHcCCccCchhHhhHHHHHhhhcchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHhhhhhcCCCC
Q 007517 213 DLFTLMQKEGVRVNFPSLISVLSVCASLASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFASKD 292 (600)
Q Consensus 213 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~ 292 (600)
..|.+.... .|+......+..++...|++++|...++.+... +|+...+..+...+.+.|+.++|...|+.....+
T Consensus 497 ~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~ 572 (987)
T PRK09782 497 YAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG 572 (987)
T ss_pred HHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 988887765 466655445555667899999999999987664 3444556677888999999999999998876643
Q ss_pred H---HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHH
Q 007517 293 I---VMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYAC 369 (600)
Q Consensus 293 ~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ 369 (600)
. ..+..+.....+.|++++|+..|++..+. .|+...+..+..++.+.|+.++|...++...... +.+...++.
T Consensus 573 P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~--Pd~~~a~~n 648 (987)
T PRK09782 573 LGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALELE--PNNSNYQAA 648 (987)
T ss_pred CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHH
Confidence 2 22333333444569999999999999874 6788888889999999999999999999998742 445788899
Q ss_pred HHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCch
Q 007517 370 MVDLLGRAGQVEDAMKLIEAM-PFEP-DAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFH 447 (600)
Q Consensus 370 li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 447 (600)
+...+...|++++|.+.+++. ...| +...+..+..++...|++++|+..++++++++|++.......++......+++
T Consensus 649 LG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~ 728 (987)
T PRK09782 649 LGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFR 728 (987)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHH
Confidence 999999999999999999987 4455 57789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCC
Q 007517 448 DVAELRKNMRKRN 460 (600)
Q Consensus 448 ~a~~~~~~m~~~g 460 (600)
.+.+-+++--..+
T Consensus 729 ~a~~~~~r~~~~~ 741 (987)
T PRK09782 729 RLHEEVGRRWTFS 741 (987)
T ss_pred HHHHHHHHHhhcC
Confidence 9998877765544
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.5e-17 Score=174.92 Aligned_cols=322 Identities=11% Similarity=0.020 Sum_probs=234.5
Q ss_pred HHHHHHHHHhCCChHHHHHHHhhcCC--CC-cchHHHHHHHHhcCCChHHHHHHHhhCC---CCCccchhHHHHHHHhcC
Q 007517 102 WTTMISGYVNNNRIDVARKLFEVMPE--KN-EVSWTAMLMGYTQCGRIQDAWELFKAMP---MKSVVASNSMILGLGQNG 175 (600)
Q Consensus 102 ~~~li~~~~~~g~~~~A~~~~~~m~~--p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g 175 (600)
.-.++..+.+.|++++|+.+++.... |+ ...+..++.+....|+++.|...++.+. +.+...+..+...+.+.|
T Consensus 45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g 124 (656)
T PRK15174 45 IILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSK 124 (656)
T ss_pred HHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcC
Confidence 33455566777777777777777665 43 3344555555666777777777777776 455566677777778888
Q ss_pred CHHHHHHHHHhccc--C-ChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCchhHhhHHHHHhhhcchHHHHHHHHH
Q 007517 176 EVQKARVVFDQMRE--K-DDATWSGMIKVYERKGYELEVIDLFTLMQKEGVRVNFPSLISVLSVCASLASLDHGRQVHAQ 252 (600)
Q Consensus 176 ~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 252 (600)
+.++|...|++... | +...|..+...+...|++++|...++.+.... |+.......+..+...|++++|...+..
T Consensus 125 ~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~--P~~~~a~~~~~~l~~~g~~~eA~~~~~~ 202 (656)
T PRK15174 125 QYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEV--PPRGDMIATCLSFLNKSRLPEDHDLARA 202 (656)
T ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 88888888877764 2 45677777888888888888888888776543 3322222223346677888888888887
Q ss_pred HHHcCCCCchhhHHHHHHHHHHcCCHHHHHhhhhhcCC---CCHHHHHHHHHHHHhcCChHH----HHHHHHHHHHCCCC
Q 007517 253 LVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFAS---KDIVMWNSIISGYAQYGLGEK----SLKVFHEMFSSGVM 325 (600)
Q Consensus 253 ~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~----A~~~~~~m~~~g~~ 325 (600)
+.+....++......+...+.+.|+.++|...|+.... .+...+..+...|.+.|++++ |+..|++..+. .
T Consensus 203 ~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l--~ 280 (656)
T PRK15174 203 LLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF--N 280 (656)
T ss_pred HHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh--C
Confidence 77664334444455566778888888888888887654 366778888888899998885 78999998874 4
Q ss_pred CC-HHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHH-HHH
Q 007517 326 PD-DVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM-PFEPDAIIW-GSL 402 (600)
Q Consensus 326 p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~-~~l 402 (600)
|+ ...+..+...+...|++++|...++...+.. +.+...+..+..+|.+.|++++|.+.++++ ...|+...+ ..+
T Consensus 281 P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~--P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~ 358 (656)
T PRK15174 281 SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH--PDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYA 358 (656)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHH
Confidence 55 4577788888899999999999999888742 334667778889999999999999999887 345665443 345
Q ss_pred HHHHHHcCCHHHHHHHHHHHhccCCCC
Q 007517 403 LGACRTHMKLDLAEVAAKKLLQLEPKN 429 (600)
Q Consensus 403 l~~~~~~g~~~~a~~~~~~~~~~~p~~ 429 (600)
..++...|+.++|...++++++..|++
T Consensus 359 a~al~~~G~~deA~~~l~~al~~~P~~ 385 (656)
T PRK15174 359 AAALLQAGKTSEAESVFEHYIQARASH 385 (656)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhChhh
Confidence 667888999999999999999998886
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=5.5e-17 Score=177.97 Aligned_cols=384 Identities=9% Similarity=0.033 Sum_probs=222.6
Q ss_pred HHHHHHcCCCHHHHHHHHccCCC---CCcchHHHHHHHHHhcCChHHHHHHHhhCCC---CCcccHHHHHHHHHhCCChH
Q 007517 43 MLGGFIRDSRIDDARRLFDMMPE---KDVVAQTNMVLGYCQDGRVDEGREIFDEMPK---KNVISWTTMISGYVNNNRID 116 (600)
Q Consensus 43 ll~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~ 116 (600)
.+....-.|+.++|.+++..... .+...+..+...+.+.|++++|..+|++..+ .+...+..+...+...|+++
T Consensus 21 ~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~ 100 (765)
T PRK10049 21 WLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYD 100 (765)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHH
Confidence 34445556666666666665542 1222355566666666666666666666332 23445555666666666666
Q ss_pred HHHHHHhhcCC--CCcchHHHHHHHHhcCCChHHHHHHHhhCC---CCCccchhHHHHHHHhcCCHHHHHHHHHhcccCC
Q 007517 117 VARKLFEVMPE--KNEVSWTAMLMGYTQCGRIQDAWELFKAMP---MKSVVASNSMILGLGQNGEVQKARVVFDQMREKD 191 (600)
Q Consensus 117 ~A~~~~~~m~~--p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~ 191 (600)
+|+..+++..+ |+...+..+..++...|+.++|...++++. +.+..++..+...+.+.|..++|.+.++.... +
T Consensus 101 eA~~~l~~~l~~~P~~~~~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~-~ 179 (765)
T PRK10049 101 EALVKAKQLVSGAPDKANLLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANL-T 179 (765)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC-C
Confidence 66666666655 332225555556666666666666666665 33444455556666666666666666665554 1
Q ss_pred hh--------hHHHHHHHHH-----HcCCh---HHHHHHHHHHHHc-CCccCch-hHhh----HHHHHhhhcchHHHHHH
Q 007517 192 DA--------TWSGMIKVYE-----RKGYE---LEVIDLFTLMQKE-GVRVNFP-SLIS----VLSVCASLASLDHGRQV 249 (600)
Q Consensus 192 ~~--------~~~~li~~~~-----~~g~~---~~A~~~~~~m~~~-g~~p~~~-t~~~----ll~~~~~~~~~~~a~~~ 249 (600)
+. ....++.... ..+++ ++|++.++.+.+. ...|+.. .+.. .+.++...|+.++|+..
T Consensus 180 p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~ 259 (765)
T PRK10049 180 PAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISE 259 (765)
T ss_pred HHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 11 1111222221 12223 6677777777653 2223221 1111 13344556777778888
Q ss_pred HHHHHHcCCC-CchhhHHHHHHHHHHcCCHHHHHhhhhhcCCCC-------HHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 007517 250 HAQLVRCQFD-VDVYVASVLITMYIKCGELVKGKLIFDNFASKD-------IVMWNSIISGYAQYGLGEKSLKVFHEMFS 321 (600)
Q Consensus 250 ~~~~~~~~~~-~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~-------~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 321 (600)
++.+.+.+.+ |+ .....+...|...|++++|...|+++...+ ...+..+..++.+.|++++|+.+++++..
T Consensus 260 ~~~ll~~~~~~P~-~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~ 338 (765)
T PRK10049 260 YQRLKAEGQIIPP-WAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTIN 338 (765)
T ss_pred HHHhhccCCCCCH-HHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhh
Confidence 8777776522 22 122224667777788888888777764321 23455556677778888888888887775
Q ss_pred CC-----------CCCCH---HHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHH
Q 007517 322 SG-----------VMPDD---VTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLI 387 (600)
Q Consensus 322 ~g-----------~~p~~---~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 387 (600)
.. -.|+. ..+..+...+...|++++|.+.++++... .+.+...+..+..++...|++++|++.+
T Consensus 339 ~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~--~P~n~~l~~~lA~l~~~~g~~~~A~~~l 416 (765)
T PRK10049 339 NSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN--APGNQGLRIDYASVLQARGWPRAAENEL 416 (765)
T ss_pred cCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 41 11231 12334445666677777777777777654 2445666777777777777777777777
Q ss_pred HhC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCC
Q 007517 388 EAM-PFEPD-AIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNA 430 (600)
Q Consensus 388 ~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 430 (600)
++. ...|+ ...+..+...+...|++++|+.+++++++..|+++
T Consensus 417 ~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~ 461 (765)
T PRK10049 417 KKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDP 461 (765)
T ss_pred HHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH
Confidence 766 44454 44555555666677777777777777777777774
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.5e-17 Score=178.66 Aligned_cols=382 Identities=9% Similarity=0.034 Sum_probs=292.4
Q ss_pred HHHHHHHHhcCChHHHHHHHhhCCC---CCcccHHHHHHHHHhCCChHHHHHHHhhcCC--CC-cchHHHHHHHHhcCCC
Q 007517 72 TNMVLGYCQDGRVDEGREIFDEMPK---KNVISWTTMISGYVNNNRIDVARKLFEVMPE--KN-EVSWTAMLMGYTQCGR 145 (600)
Q Consensus 72 ~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--p~-~~t~~~ll~~~~~~g~ 145 (600)
.-.+......|+.++|++++.+... .+...+..+...+.+.|++++|..+|++..+ |+ ...+..+..++...|+
T Consensus 19 ~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~ 98 (765)
T PRK10049 19 ADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQ 98 (765)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC
Confidence 4456677889999999999998764 3344589999999999999999999999766 54 4566778888999999
Q ss_pred hHHHHHHHhhCC---CCCccchhHHHHHHHhcCCHHHHHHHHHhcccC---ChhhHHHHHHHHHHcCChHHHHHHHHHHH
Q 007517 146 IQDAWELFKAMP---MKSVVASNSMILGLGQNGEVQKARVVFDQMREK---DDATWSGMIKVYERKGYELEVIDLFTLMQ 219 (600)
Q Consensus 146 ~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 219 (600)
.++|...++.+. +.+.. +..+...+...|+.++|...++++.+. +...+..+...+...|..++|+..++...
T Consensus 99 ~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~ 177 (765)
T PRK10049 99 YDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDAN 177 (765)
T ss_pred HHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCC
Confidence 999999999987 55566 888899999999999999999998753 55667778888899999999999887655
Q ss_pred HcCCccCch------hHhhHHHHH-----hhhcch---HHHHHHHHHHHHc-CCCCchh-h-HHH---HHHHHHHcCCHH
Q 007517 220 KEGVRVNFP------SLISVLSVC-----ASLASL---DHGRQVHAQLVRC-QFDVDVY-V-ASV---LITMYIKCGELV 279 (600)
Q Consensus 220 ~~g~~p~~~------t~~~ll~~~-----~~~~~~---~~a~~~~~~~~~~-~~~~~~~-~-~~~---li~~y~~~g~~~ 279 (600)
. .|+.. .....+... ...+++ +.|...++.+.+. ...|+.. . ..+ .+.++...|+++
T Consensus 178 ~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~ 254 (765)
T PRK10049 178 L---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYK 254 (765)
T ss_pred C---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHH
Confidence 3 23310 111111111 122233 6677788887764 2223221 1 111 123445779999
Q ss_pred HHHhhhhhcCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHhccCCHHHHHHH
Q 007517 280 KGKLIFDNFASKD----IVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPD-----DVTLVGVLSACSYTGKVKEGREI 350 (600)
Q Consensus 280 ~A~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-----~~t~~~ll~a~~~~g~~~~a~~~ 350 (600)
+|...|+.+...+ ...-..+...|...|++++|+..|+++.+.. |. ......+..++...|++++|.++
T Consensus 255 eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~--p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~ 332 (765)
T PRK10049 255 DVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHP--ETIADLSDEELADLFYSLLESENYPGALTV 332 (765)
T ss_pred HHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcC--CCCCCCChHHHHHHHHHHHhcccHHHHHHH
Confidence 9999999987632 1122225778999999999999999987643 32 23455666688999999999999
Q ss_pred HHHhHhcCC----------CCCC---hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHH
Q 007517 351 FESMKSKYL----------VEPK---TEHYACMVDLLGRAGQVEDAMKLIEAM-PFEP-DAIIWGSLLGACRTHMKLDLA 415 (600)
Q Consensus 351 ~~~~~~~~~----------~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a 415 (600)
++.+..... -.|+ ...+..+..++...|++++|+++++++ ...| +...+..+...+...|++++|
T Consensus 333 l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A 412 (765)
T PRK10049 333 TAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAA 412 (765)
T ss_pred HHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHH
Confidence 999886421 0122 235567888999999999999999997 3344 577899999999999999999
Q ss_pred HHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007517 416 EVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMRKR 459 (600)
Q Consensus 416 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 459 (600)
+..++++++++|+++..+..++..+...|++++|.++++.+.+.
T Consensus 413 ~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 413 ENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred HHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999864
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.3e-16 Score=169.52 Aligned_cols=324 Identities=10% Similarity=-0.001 Sum_probs=265.9
Q ss_pred CcchHHHHHHHHhcCCChHHHHHHHhhCC---CCCccchhHHHHHHHhcCCHHHHHHHHHhcccC---ChhhHHHHHHHH
Q 007517 129 NEVSWTAMLMGYTQCGRIQDAWELFKAMP---MKSVVASNSMILGLGQNGEVQKARVVFDQMREK---DDATWSGMIKVY 202 (600)
Q Consensus 129 ~~~t~~~ll~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~ 202 (600)
+..-...++..+.+.|+.+.|..+++... +.+......++......|++++|...|+++... +...|..+...+
T Consensus 41 ~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l 120 (656)
T PRK15174 41 NEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVL 120 (656)
T ss_pred cccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 44456667788899999999999999887 555666777778888899999999999999753 567788899999
Q ss_pred HHcCChHHHHHHHHHHHHcCCccC-chhHhhHHHHHhhhcchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHH
Q 007517 203 ERKGYELEVIDLFTLMQKEGVRVN-FPSLISVLSVCASLASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKG 281 (600)
Q Consensus 203 ~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A 281 (600)
.+.|++++|++.|++.... .|+ ...+..+...+...|+.++|...+..+......+ ...+..+ ..+.+.|++++|
T Consensus 121 ~~~g~~~~Ai~~l~~Al~l--~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~-~~a~~~~-~~l~~~g~~~eA 196 (656)
T PRK15174 121 LKSKQYATVADLAEQAWLA--FSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPR-GDMIATC-LSFLNKSRLPED 196 (656)
T ss_pred HHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCC-HHHHHHH-HHHHHcCCHHHH
Confidence 9999999999999999875 454 5567778888999999999999999887765333 3333333 347889999999
Q ss_pred HhhhhhcCCC----CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHH----HHHHHHH
Q 007517 282 KLIFDNFASK----DIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKE----GREIFES 353 (600)
Q Consensus 282 ~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~----a~~~~~~ 353 (600)
...++.+... +...+..+...+.+.|++++|+..|+++.+.. +.+...+..+..++...|++++ |...|+.
T Consensus 197 ~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~ 275 (656)
T PRK15174 197 HDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRH 275 (656)
T ss_pred HHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHH
Confidence 9999987542 33445556778899999999999999999753 3345567778888999999986 8999999
Q ss_pred hHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCc
Q 007517 354 MKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM-PFEPD-AIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAG 431 (600)
Q Consensus 354 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 431 (600)
..+.. +.+...+..+..+|.+.|++++|...+++. ...|+ ...+..+..++...|++++|...++++.+.+|+++.
T Consensus 276 Al~l~--P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~ 353 (656)
T PRK15174 276 ALQFN--SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSK 353 (656)
T ss_pred HHhhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchH
Confidence 88742 445788999999999999999999999988 44554 567888889999999999999999999999999876
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007517 432 PYILLSNIYASQGRFHDVAELRKNMRKR 459 (600)
Q Consensus 432 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 459 (600)
.+..++.++...|++++|.+.+++..+.
T Consensus 354 ~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 354 WNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 6777889999999999999999998765
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.3e-15 Score=164.01 Aligned_cols=414 Identities=10% Similarity=0.036 Sum_probs=287.8
Q ss_pred HHHhCCChHHHHHHHhhCCCCCcc---hHHHHHHHHHcCCCHHHHHHHHccCCCCCcchHHHH---HHHHHhcCChHHHH
Q 007517 15 GYVEEGMITEAGTLFWQMPEKNVV---SWTVMLGGFIRDSRIDDARRLFDMMPEKDVVAQTNM---VLGYCQDGRVDEGR 88 (600)
Q Consensus 15 ~~~~~g~~~~A~~~~~~m~~~~~~---~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~l---i~~~~~~g~~~~A~ 88 (600)
...+.|+++.|+..|++....++. ....++..+...|+.++|+..+++...|+...+..+ ...|...|++++|+
T Consensus 43 i~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Ai 122 (822)
T PRK14574 43 IRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQAL 122 (822)
T ss_pred HHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 356888999999999888843332 123777888888999999999998886654444433 34677779999999
Q ss_pred HHHhhCCC---CCcccHHHHHHHHHhCCChHHHHHHHhhcCC--CCcchHHHHHHHHhcCCChHHHHHHHhhCC---CCC
Q 007517 89 EIFDEMPK---KNVISWTTMISGYVNNNRIDVARKLFEVMPE--KNEVSWTAMLMGYTQCGRIQDAWELFKAMP---MKS 160 (600)
Q Consensus 89 ~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~---~~~ 160 (600)
++|+++.+ .|...+..++..+...++.++|++.++++.. |+...+..++..+...++..+|.+.++++. +.+
T Consensus 123 ely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~P~n 202 (822)
T PRK14574 123 ALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVRLAPTS 202 (822)
T ss_pred HHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhCCCC
Confidence 99998875 2445666777888888999999999988887 665555444444444556656888888887 556
Q ss_pred ccchhHHHHHHHhcCCHHHHHHHHHhcccC-ChhhHHH----HHHHHH---------HcCC---hHHHHHHHHHHHHc-C
Q 007517 161 VVASNSMILGLGQNGEVQKARVVFDQMREK-DDATWSG----MIKVYE---------RKGY---ELEVIDLFTLMQKE-G 222 (600)
Q Consensus 161 ~~~~~~li~~~~~~g~~~~A~~~f~~~~~~-~~~~~~~----li~~~~---------~~g~---~~~A~~~~~~m~~~-g 222 (600)
...+..++....+.|-...|.++..+-+.- +...+.- .+.-.+ ...+ .+.|+.-++.+... +
T Consensus 203 ~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~ 282 (822)
T PRK14574 203 EEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWG 282 (822)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhcc
Confidence 677778888888888888888888776531 1111100 011111 1122 24455555555542 2
Q ss_pred CccCchh-H----hhHHHHHhhhcchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHhhhhhcCCC------
Q 007517 223 VRVNFPS-L----ISVLSVCASLASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFASK------ 291 (600)
Q Consensus 223 ~~p~~~t-~----~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~------ 291 (600)
..|.... | .--+-++...++..+++..++.+...+.+....+-.++.++|...++.++|..+|..+...
T Consensus 283 ~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~ 362 (822)
T PRK14574 283 KDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFR 362 (822)
T ss_pred CCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccC
Confidence 2232221 2 2345567778888888888888888887666678888888888888999998888876431
Q ss_pred ---CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-----------CCC--HHH-HHHHHHHHhccCCHHHHHHHHHHh
Q 007517 292 ---DIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGV-----------MPD--DVT-LVGVLSACSYTGKVKEGREIFESM 354 (600)
Q Consensus 292 ---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-----------~p~--~~t-~~~ll~a~~~~g~~~~a~~~~~~~ 354 (600)
+......|.-+|...+++++|..+++++.+.-. .|| -.. +..+...+...|++.+|++.++.+
T Consensus 363 ~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l 442 (822)
T PRK14574 363 NSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDL 442 (822)
T ss_pred CCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 233356778888888888899888888876311 122 222 333455677788888888888888
Q ss_pred HhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCC
Q 007517 355 KSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM-PFEPD-AIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNA 430 (600)
Q Consensus 355 ~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 430 (600)
... -+-|......+.+++...|.+.+|++.++.. .+.|+ ..+...+..+....|++.+|..+.+.+.+..|+++
T Consensus 443 ~~~--aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~ 518 (822)
T PRK14574 443 SST--APANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRSPEDI 518 (822)
T ss_pred HHh--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCch
Confidence 764 3557888888888888888888888888766 44554 45566677777788888888888888888888885
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.8e-15 Score=162.98 Aligned_cols=408 Identities=12% Similarity=0.049 Sum_probs=304.4
Q ss_pred HHHcCCCHHHHHHHHccCCCCCcch---HHHHHHHHHhcCChHHHHHHHhhCCCCCcccHHH-H--HHHHHhCCChHHHH
Q 007517 46 GFIRDSRIDDARRLFDMMPEKDVVA---QTNMVLGYCQDGRVDEGREIFDEMPKKNVISWTT-M--ISGYVNNNRIDVAR 119 (600)
Q Consensus 46 ~~~~~g~~~~A~~~~~~m~~~~~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~-l--i~~~~~~g~~~~A~ 119 (600)
...+.|+++.|+..|++..+.++.. ...++..+...|+.++|+..+++...|+...+.. + ...|...|++++|+
T Consensus 43 i~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Ai 122 (822)
T PRK14574 43 IRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQAL 122 (822)
T ss_pred HHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 4668999999999999998544332 3388889999999999999999998765444433 3 45778889999999
Q ss_pred HHHhhcCC--CC-cchHHHHHHHHhcCCChHHHHHHHhhCCCCCc--cchhHHHHHHHhcCCHHHHHHHHHhcccC---C
Q 007517 120 KLFEVMPE--KN-EVSWTAMLMGYTQCGRIQDAWELFKAMPMKSV--VASNSMILGLGQNGEVQKARVVFDQMREK---D 191 (600)
Q Consensus 120 ~~~~~m~~--p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~f~~~~~~---~ 191 (600)
++|+++.+ |+ ...+..++..+...++.++|.+.++.+.+.++ ..+..++..+...++..+|++.++++.+. +
T Consensus 123 ely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~P~n 202 (822)
T PRK14574 123 ALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVRLAPTS 202 (822)
T ss_pred HHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhCCCC
Confidence 99999988 54 45667778889999999999999999994443 33434444444466666699999999753 5
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCchhHhh-----------HHHHH-----hhhcch---HHHHHHHHH
Q 007517 192 DATWSGMIKVYERKGYELEVIDLFTLMQKEGVRVNFPSLIS-----------VLSVC-----ASLASL---DHGRQVHAQ 252 (600)
Q Consensus 192 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~-----------ll~~~-----~~~~~~---~~a~~~~~~ 252 (600)
...+..+..+..+.|-...|+++..+- |+.++=.. .+..- ....++ +.|..-++.
T Consensus 203 ~e~~~~~~~~l~~~~~~~~a~~l~~~~------p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~ 276 (822)
T PRK14574 203 EEVLKNHLEILQRNRIVEPALRLAKEN------PNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQN 276 (822)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHhC------ccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHH
Confidence 667788889999999999998776542 32222111 11000 011222 334444444
Q ss_pred HHHc-C-CCCchhh-HHH---HHHHHHHcCCHHHHHhhhhhcCCC----CHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 007517 253 LVRC-Q-FDVDVYV-ASV---LITMYIKCGELVKGKLIFDNFASK----DIVMWNSIISGYAQYGLGEKSLKVFHEMFSS 322 (600)
Q Consensus 253 ~~~~-~-~~~~~~~-~~~---li~~y~~~g~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 322 (600)
+... + .++.... ..+ .+-++.+.|++.++.+.|+.+... ...+--++.++|...+++++|+.+|++....
T Consensus 277 l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~ 356 (822)
T PRK14574 277 LLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYS 356 (822)
T ss_pred HHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhc
Confidence 4432 1 1222222 223 344567889999999999999853 3456677899999999999999999999764
Q ss_pred C-----CCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhcCC----------CCCC---hHHHHHHHHHHhhcCCHHHHH
Q 007517 323 G-----VMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYL----------VEPK---TEHYACMVDLLGRAGQVEDAM 384 (600)
Q Consensus 323 g-----~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~----------~~p~---~~~~~~li~~~~~~g~~~~A~ 384 (600)
. ..++......|..|+...+++++|..+++.+.+... -.|+ ...+..++..+...|++.+|+
T Consensus 357 ~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae 436 (822)
T PRK14574 357 DGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQ 436 (822)
T ss_pred cccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHH
Confidence 3 122333356788999999999999999999987321 0122 344566788899999999999
Q ss_pred HHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007517 385 KLIEAM-PFEP-DAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMRKR 459 (600)
Q Consensus 385 ~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 459 (600)
+.++++ ...| |...+..+...+...|.+.+|+..++.+..++|++..+....+.++...|+|++|.++.+...+.
T Consensus 437 ~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~ 513 (822)
T PRK14574 437 KKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISR 513 (822)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh
Confidence 999998 3344 78889999999999999999999999999999999999999999999999999999998877654
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.72 E-value=6e-14 Score=144.93 Aligned_cols=437 Identities=11% Similarity=0.091 Sum_probs=320.7
Q ss_pred HhCCChHHHHHHHhhCC------CCCcchHHHHHHHHHcCCCHHHHHHHHccCCCCCcchHHHHHHHHH------hcCCh
Q 007517 17 VEEGMITEAGTLFWQMP------EKNVVSWTVMLGGFIRDSRIDDARRLFDMMPEKDVVAQTNMVLGYC------QDGRV 84 (600)
Q Consensus 17 ~~~g~~~~A~~~~~~m~------~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~------~~g~~ 84 (600)
...+++..|+.+|...+ .+|+.+.. ...+.++|+.+.|+..|.+..+-|+..-++++.... ....+
T Consensus 175 ynkkdY~~al~yyk~al~inp~~~aD~rIgi--g~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~ 252 (1018)
T KOG2002|consen 175 YNKKDYRGALKYYKKALRINPACKADVRIGI--GHCFWKLGMSEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSY 252 (1018)
T ss_pred hccccHHHHHHHHHHHHhcCcccCCCccchh--hhHHHhccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHH
Confidence 35688999999999865 34554432 356678999999999999998776666565554322 12345
Q ss_pred HHHHHHHhhCCC---CCcccHHHHHHHHHhCCChHHHHHHHhhcCC------CCcchHHHHHHHHhcCCChHHHHHHHhh
Q 007517 85 DEGREIFDEMPK---KNVISWTTMISGYVNNNRIDVARKLFEVMPE------KNEVSWTAMLMGYTQCGRIQDAWELFKA 155 (600)
Q Consensus 85 ~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~------p~~~t~~~ll~~~~~~g~~~~a~~~~~~ 155 (600)
..+..++...-. .|+++.+.|.+-|.-.|++..++.+...+.. .-...|-.+.+++-..|++++|...|.+
T Consensus 253 ~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~ 332 (1018)
T KOG2002|consen 253 KKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYME 332 (1018)
T ss_pred HHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHH
Confidence 556666655432 5888999999999999999999999888876 1234688899999999999999999988
Q ss_pred CC--CCC--ccchhHHHHHHHhcCCHHHHHHHHHhcccC---ChhhHHHHHHHHHHcC----ChHHHHHHHHHHHHcCCc
Q 007517 156 MP--MKS--VVASNSMILGLGQNGEVQKARVVFDQMREK---DDATWSGMIKVYERKG----YELEVIDLFTLMQKEGVR 224 (600)
Q Consensus 156 ~~--~~~--~~~~~~li~~~~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g----~~~~A~~~~~~m~~~g~~ 224 (600)
.. .++ +..+-.|..+|.+.|+++.|...|+.+... +..+...+...|+..+ ..++|..++.+....- +
T Consensus 333 s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~ 411 (1018)
T KOG2002|consen 333 SLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-P 411 (1018)
T ss_pred HHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-c
Confidence 87 333 344557899999999999999999998753 5667777778888775 3455666655554432 3
Q ss_pred cCchhHhhHHHHHhhhcchHHHHHHHHHH----HHcCCCCchhhHHHHHHHHHHcCCHHHHHhhhhhcCCC-------CH
Q 007517 225 VNFPSLISVLSVCASLASLDHGRQVHAQL----VRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFASK-------DI 293 (600)
Q Consensus 225 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~----~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~-------~~ 293 (600)
.|...|..+...+.. ++......++..+ ...+-.+.+.+.|.+...+...|+++.|...|...... |.
T Consensus 412 ~d~~a~l~laql~e~-~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de 490 (1018)
T KOG2002|consen 412 VDSEAWLELAQLLEQ-TDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDE 490 (1018)
T ss_pred ccHHHHHHHHHHHHh-cChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccc
Confidence 345555555554433 3444445555443 34555688899999999999999999999999876432 22
Q ss_pred ------HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHH
Q 007517 294 ------VMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVT-LVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEH 366 (600)
Q Consensus 294 ------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~ 366 (600)
.+-..+...+-..++.+.|.+.|....+. .|.-++ |..++......+...+|...+...... ...++..
T Consensus 491 ~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~--d~~np~a 566 (1018)
T KOG2002|consen 491 GKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNI--DSSNPNA 566 (1018)
T ss_pred cccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhc--ccCCcHH
Confidence 22333455566678999999999999885 677653 444443333457888999999888763 3566777
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC----CCCCCHHHHHHHHHHHHH------------cCCHHHHHHHHHHHhccCCCCC
Q 007517 367 YACMVDLLGRAGQVEDAMKLIEAM----PFEPDAIIWGSLLGACRT------------HMKLDLAEVAAKKLLQLEPKNA 430 (600)
Q Consensus 367 ~~~li~~~~~~g~~~~A~~~~~~m----~~~p~~~~~~~ll~~~~~------------~g~~~~a~~~~~~~~~~~p~~~ 430 (600)
++-+.+.+.+...+.-|.+-|+.. ...+|..+.-+|.+.|.+ .+..++|+++|.+++..+|.|.
T Consensus 567 rsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~ 646 (1018)
T KOG2002|consen 567 RSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNM 646 (1018)
T ss_pred HHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchh
Confidence 888888898888888888855444 334788888888876653 3456889999999999999998
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 007517 431 GPYILLSNIYASQGRFHDVAELRKNMRKRNV 461 (600)
Q Consensus 431 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 461 (600)
.+-..++-+++..|++.+|..+|.+..+...
T Consensus 647 yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~ 677 (1018)
T KOG2002|consen 647 YAANGIGIVLAEKGRFSEARDIFSQVREATS 677 (1018)
T ss_pred hhccchhhhhhhccCchHHHHHHHHHHHHHh
Confidence 7778899999999999999999999998754
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.8e-14 Score=147.35 Aligned_cols=414 Identities=10% Similarity=0.098 Sum_probs=276.0
Q ss_pred CCcchHHHHHHHHHcCCCHHHHHHHHccCCCCC------cchHHHHHHHHHhcCChHHHHHHHhhCCC--CC--cccHHH
Q 007517 35 KNVVSWTVMLGGFIRDSRIDDARRLFDMMPEKD------VVAQTNMVLGYCQDGRVDEGREIFDEMPK--KN--VISWTT 104 (600)
Q Consensus 35 ~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~--~~~~~~ 104 (600)
.++.+.+.|.+.|.-.|++..+..+...+...+ ..+|-.+..+|-..|++++|...|-+..+ +| +..+--
T Consensus 268 ~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~G 347 (1018)
T KOG2002|consen 268 ENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVG 347 (1018)
T ss_pred CCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccc
Confidence 456666666666666777777766666665322 22355566677777777777777766544 22 233445
Q ss_pred HHHHHHhCCChHHHHHHHhhcCC--CCc-chHHHHHHHHhcCC----ChHHHHHHHhhCC---CCCccchhHHHHHHHhc
Q 007517 105 MISGYVNNNRIDVARKLFEVMPE--KNE-VSWTAMLMGYTQCG----RIQDAWELFKAMP---MKSVVASNSMILGLGQN 174 (600)
Q Consensus 105 li~~~~~~g~~~~A~~~~~~m~~--p~~-~t~~~ll~~~~~~g----~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~ 174 (600)
|...|.+.|+.+.+...|+...+ ||. .|...+...|+..+ ..+.|..+..... +.|...|-.+..+|-..
T Consensus 348 lgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~ 427 (1018)
T KOG2002|consen 348 LGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQT 427 (1018)
T ss_pred hhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhc
Confidence 66677777777777777777666 543 35555555555553 4455666666555 33444455555554443
Q ss_pred CCHHHHHHHHHhcc--------cCChhhHHHHHHHHHHcCChHHHHHHHHHHHHc---CCccCch-----h-HhhHHHHH
Q 007517 175 GEVQKARVVFDQMR--------EKDDATWSGMIKVYERKGYELEVIDLFTLMQKE---GVRVNFP-----S-LISVLSVC 237 (600)
Q Consensus 175 g~~~~A~~~f~~~~--------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~~-----t-~~~ll~~~ 237 (600)
.-+ .++.+|.... ..-+...|.+...+...|.+++|...|...... -..+|.. | --.+....
T Consensus 428 d~~-~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~ 506 (1018)
T KOG2002|consen 428 DPW-ASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLL 506 (1018)
T ss_pred ChH-HHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHH
Confidence 322 2233332221 235667788888888888888888888877654 2233331 1 22233344
Q ss_pred hhhcchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHc-------CCHHHHHhhhhhcCC---CCHHHHHHHHHHHHhcC
Q 007517 238 ASLASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKC-------GELVKGKLIFDNFAS---KDIVMWNSIISGYAQYG 307 (600)
Q Consensus 238 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~-------g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g 307 (600)
-..++.+.|.+++..+.+.. | ..|++|.+. ++..+|...+..... .|+..|+.+...|....
T Consensus 507 E~l~~~~~A~e~Yk~Ilkeh--p------~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~ 578 (1018)
T KOG2002|consen 507 EELHDTEVAEEMYKSILKEH--P------GYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKS 578 (1018)
T ss_pred HhhhhhhHHHHHHHHHHHHC--c------hhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhh
Confidence 55678888888888888753 1 244455444 566677777776543 57788888888888888
Q ss_pred ChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHhc------------cCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHH
Q 007517 308 LGEKSLKVFHEMFSSG-VMPDDVTLVGVLSACSY------------TGKVKEGREIFESMKSKYLVEPKTEHYACMVDLL 374 (600)
Q Consensus 308 ~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~a~~~------------~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~ 374 (600)
.+..|.+-|+...+.- ..+|.++..+|-..|.. .+..+.|.++|.++.+.. +.|...-|-+.-.+
T Consensus 579 ~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d--pkN~yAANGIgiVL 656 (1018)
T KOG2002|consen 579 EWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND--PKNMYAANGIGIVL 656 (1018)
T ss_pred hhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC--cchhhhccchhhhh
Confidence 8888888777665532 34677777666665532 245678888888887642 45677888889999
Q ss_pred hhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc--CCCCCchHHHHHHHHHhcCCchHHH
Q 007517 375 GRAGQVEDAMKLIEAM--PFEPDAIIWGSLLGACRTHMKLDLAEVAAKKLLQL--EPKNAGPYILLSNIYASQGRFHDVA 450 (600)
Q Consensus 375 ~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~--~p~~~~~~~~l~~~~~~~g~~~~a~ 450 (600)
+..|++.+|..+|.+. ....+..+|-.+..+|...|++..|.++|+..++. ..+++.....|+.++...|++.+|.
T Consensus 657 A~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak 736 (1018)
T KOG2002|consen 657 AEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAK 736 (1018)
T ss_pred hhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHH
Confidence 9999999999999988 22335678999999999999999999999998873 3445667788999999999999999
Q ss_pred HHHHHHHhC
Q 007517 451 ELRKNMRKR 459 (600)
Q Consensus 451 ~~~~~m~~~ 459 (600)
+........
T Consensus 737 ~~ll~a~~~ 745 (1018)
T KOG2002|consen 737 EALLKARHL 745 (1018)
T ss_pred HHHHHHHHh
Confidence 988877654
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.6e-14 Score=136.72 Aligned_cols=433 Identities=13% Similarity=0.116 Sum_probs=295.0
Q ss_pred HHHHHHHHHhCCChHHHHHHHhhCCC----CCc-chHHHHHHHHHcCCCHHHHHHHHccCCC--C------CcchHHHHH
Q 007517 9 WTAMVRGYVEEGMITEAGTLFWQMPE----KNV-VSWTVMLGGFIRDSRIDDARRLFDMMPE--K------DVVAQTNMV 75 (600)
Q Consensus 9 ~~~ll~~~~~~g~~~~A~~~~~~m~~----~~~-~~~~~ll~~~~~~g~~~~A~~~~~~m~~--~------~~~~~~~li 75 (600)
...|.+.|..+....+|+..|+-+.. |+. ..--.+...+.+...+..|++.|+.... | .+...+.+.
T Consensus 204 l~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nig 283 (840)
T KOG2003|consen 204 LFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIG 283 (840)
T ss_pred HHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcC
Confidence 34466777778888899998887763 222 1222334556777888889888766542 2 123445555
Q ss_pred HHHHhcCChHHHHHHHhhCCC--CCcccHHHHHHHHHhCCChHHHHHHHhhcCC----------------CCcchHHHHH
Q 007517 76 LGYCQDGRVDEGREIFDEMPK--KNVISWTTMISGYVNNNRIDVARKLFEVMPE----------------KNEVSWTAML 137 (600)
Q Consensus 76 ~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----------------p~~~t~~~ll 137 (600)
..+.+.|.+++|+..|+...+ ||..+--.|+-++.--|+.++..+.|..|.. |+....+..+
T Consensus 284 vtfiq~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai 363 (840)
T KOG2003|consen 284 VTFIQAGQYDDAINSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAI 363 (840)
T ss_pred eeEEecccchhhHhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHH
Confidence 678899999999999998764 7776655555566677888888888888865 2333333222
Q ss_pred H-----HHhcCC--ChHHHHHHHhhCC----CCCccc-------------hh--------HHHHHHHhcCCHHHHHHHHH
Q 007517 138 M-----GYTQCG--RIQDAWELFKAMP----MKSVVA-------------SN--------SMILGLGQNGEVQKARVVFD 185 (600)
Q Consensus 138 ~-----~~~~~g--~~~~a~~~~~~~~----~~~~~~-------------~~--------~li~~~~~~g~~~~A~~~f~ 185 (600)
. -.-+.+ +.+++.-.-..++ .++... +. .-..-|.+.|+++.|.+++.
T Consensus 364 ~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilk 443 (840)
T KOG2003|consen 364 KNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILK 443 (840)
T ss_pred hhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHH
Confidence 2 122111 1222222222222 222110 11 11235788999999998888
Q ss_pred hcccCChhhHH----HHHH-HHHHc-CChHHHHHHHHHHHHcCCccCchhHhhHHHHHhhhcchHHHHHHHHHHHHcCCC
Q 007517 186 QMREKDDATWS----GMIK-VYERK-GYELEVIDLFTLMQKEGVRVNFPSLISVLSVCASLASLDHGRQVHAQLVRCQFD 259 (600)
Q Consensus 186 ~~~~~~~~~~~----~li~-~~~~~-g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 259 (600)
-...+|..+-. .|-. -|.+- .++..|..+-....... +-+....+.--+.....|++++|...+.+.....-.
T Consensus 444 v~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndas 522 (840)
T KOG2003|consen 444 VFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDAS 522 (840)
T ss_pred HHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchH
Confidence 77766544322 2222 22333 34555555544443321 122222222223344578999999999999876544
Q ss_pred CchhhHHHHHHHHHHcCCHHHHHhhhhhcCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 007517 260 VDVYVASVLITMYIKCGELVKGKLIFDNFAS---KDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLS 336 (600)
Q Consensus 260 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 336 (600)
.....|| +.-.+-+.|++++|+..|-++.. .++...-.+...|-...++.+|++++.+.... ++.|...+.-|..
T Consensus 523 c~ealfn-iglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~d 600 (840)
T KOG2003|consen 523 CTEALFN-IGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLAD 600 (840)
T ss_pred HHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHH
Confidence 3344444 33457788999999999977643 57777777888899999999999999877653 4455667888889
Q ss_pred HHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHH-HHcCCHHH
Q 007517 337 ACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM-PFEPDAIIWGSLLGAC-RTHMKLDL 414 (600)
Q Consensus 337 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~-~~~g~~~~ 414 (600)
.|-+.|+-.+|.+.+-.--+ -++.+.++...|...|....-+++|...|++. -+.|+..-|..++..| ++.|++.+
T Consensus 601 lydqegdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqk 678 (840)
T KOG2003|consen 601 LYDQEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQK 678 (840)
T ss_pred Hhhcccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHH
Confidence 99999999999998765443 25678999999999999999999999999998 5789999999998776 56799999
Q ss_pred HHHHHHHHhccCCCCCchHHHHHHHHHhcCCc
Q 007517 415 AEVAAKKLLQLEPKNAGPYILLSNIYASQGRF 446 (600)
Q Consensus 415 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 446 (600)
|..+++......|.+....-.|..++...|.-
T Consensus 679 a~d~yk~~hrkfpedldclkflvri~~dlgl~ 710 (840)
T KOG2003|consen 679 AFDLYKDIHRKFPEDLDCLKFLVRIAGDLGLK 710 (840)
T ss_pred HHHHHHHHHHhCccchHHHHHHHHHhccccch
Confidence 99999999999999989999999999888853
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.59 E-value=4.5e-15 Score=143.77 Aligned_cols=256 Identities=13% Similarity=0.136 Sum_probs=113.5
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCccCchhHhhHH-HHHhhhcchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcC
Q 007517 198 MIKVYERKGYELEVIDLFTLMQKEGVRVNFPSLISVL-SVCASLASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCG 276 (600)
Q Consensus 198 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g 276 (600)
+...+.+.|++++|++++++......+|+...|-.++ ..+...++.+.|...++.+...+. .++..+..++.. ...+
T Consensus 14 ~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~-~~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 14 LARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDK-ANPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccc-cccc
Confidence 3556677788888888776554443245555554433 344556778888888888877653 356667777777 6889
Q ss_pred CHHHHHhhhhhcCC--CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHhccCCHHHHHHHHHH
Q 007517 277 ELVKGKLIFDNFAS--KDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSG-VMPDDVTLVGVLSACSYTGKVKEGREIFES 353 (600)
Q Consensus 277 ~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 353 (600)
++++|.+++...-+ ++...+..++..+.+.++++++.+++++..... .+++...|..+...+.+.|+.++|.+.+++
T Consensus 92 ~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~ 171 (280)
T PF13429_consen 92 DPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRK 171 (280)
T ss_dssp --------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred cccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999888876643 566778888889999999999999999987643 345666777788888999999999999999
Q ss_pred hHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCc
Q 007517 354 MKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM--PFEPDAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAG 431 (600)
Q Consensus 354 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 431 (600)
..+.. +.+......++..+...|+.+++.++++.. ..+.|+..|..+..++...|+.++|...++++.+..|+|+.
T Consensus 172 al~~~--P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~ 249 (280)
T PF13429_consen 172 ALELD--PDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPL 249 (280)
T ss_dssp HHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HH
T ss_pred HHHcC--CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccccc
Confidence 98752 335888999999999999999988888766 22346678899999999999999999999999999999999
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHHH
Q 007517 432 PYILLSNIYASQGRFHDVAELRKNMR 457 (600)
Q Consensus 432 ~~~~l~~~~~~~g~~~~a~~~~~~m~ 457 (600)
....++.++...|+.++|.+++++..
T Consensus 250 ~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 250 WLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHHHHHHHT----------------
T ss_pred cccccccccccccccccccccccccc
Confidence 99999999999999999999988764
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.58 E-value=4e-11 Score=119.04 Aligned_cols=447 Identities=13% Similarity=0.099 Sum_probs=321.4
Q ss_pred HhCCChHHHHHHHhhCCCCCcchHHHHHHHHHcCCCHHHHHHHHccCC---CCCcchHHHHHHHHHhcCChHHHHHHHhh
Q 007517 17 VEEGMITEAGTLFWQMPEKNVVSWTVMLGGFIRDSRIDDARRLFDMMP---EKDVVAQTNMVLGYCQDGRVDEGREIFDE 93 (600)
Q Consensus 17 ~~~g~~~~A~~~~~~m~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 93 (600)
+.-...+.|..++.+..+--+ +..-|.-+|++..-++.|+.++.+.. ..+...|.+-...--.+|+.+...++.++
T Consensus 387 VelE~~~darilL~rAveccp-~s~dLwlAlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~r 465 (913)
T KOG0495|consen 387 VELEEPEDARILLERAVECCP-QSMDLWLALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDR 465 (913)
T ss_pred HhccChHHHHHHHHHHHHhcc-chHHHHHHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 345566667777776652111 11223344556666777777776655 34666666655555666666666665554
Q ss_pred CCC------------------------CC---------------------cccHHHHHHHHHhCCChHHHHHHHhhcCC-
Q 007517 94 MPK------------------------KN---------------------VISWTTMISGYVNNNRIDVARKLFEVMPE- 127 (600)
Q Consensus 94 m~~------------------------~~---------------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~- 127 (600)
-.. .. -.+|+.-...|.+.+.++-|..+|....+
T Consensus 466 gl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv 545 (913)
T KOG0495|consen 466 GLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV 545 (913)
T ss_pred HHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh
Confidence 220 11 12455555566666667777777776666
Q ss_pred -C-CcchHHHHHHHHhcCCChHHHHHHHhhCC---CCCccchhHHHHHHHhcCCHHHHHHHHHhcccC---ChhhHHHHH
Q 007517 128 -K-NEVSWTAMLMGYTQCGRIQDAWELFKAMP---MKSVVASNSMILGLGQNGEVQKARVVFDQMREK---DDATWSGMI 199 (600)
Q Consensus 128 -p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~---~~~~~~~li 199 (600)
| +...|......--..|..+.-..++++++ +.....|-.....+...|++..|+.++.+..+. +...|-+-+
T Consensus 546 fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaav 625 (913)
T KOG0495|consen 546 FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAV 625 (913)
T ss_pred ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 3 34455555555556677787778887777 555566777777778888888888888777642 566788888
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCccCchhHhhHHHHHhhhcchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHH
Q 007517 200 KVYERKGYELEVIDLFTLMQKEGVRVNFPSLISVLSVCASLASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELV 279 (600)
Q Consensus 200 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~ 279 (600)
..-..+..+++|..+|.+... ..|+...|.--+..--.++..++|.++++..++.- +.-...|-.+.+.|-+.++++
T Consensus 626 Kle~en~e~eraR~llakar~--~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~f-p~f~Kl~lmlGQi~e~~~~ie 702 (913)
T KOG0495|consen 626 KLEFENDELERARDLLAKARS--ISGTERVWMKSANLERYLDNVEEALRLLEEALKSF-PDFHKLWLMLGQIEEQMENIE 702 (913)
T ss_pred HHhhccccHHHHHHHHHHHhc--cCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhC-CchHHHHHHHhHHHHHHHHHH
Confidence 888888889999988888766 45666666666666666788888888888888763 444567778888888888899
Q ss_pred HHHhhhhhcCC--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHh
Q 007517 280 KGKLIFDNFAS--K-DIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKS 356 (600)
Q Consensus 280 ~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 356 (600)
.|...|..-.. | .+..|-.|...=-+.|+.-+|..+|++.+-.+ +-|...|...|..=.+.|+.++|..+..+..+
T Consensus 703 ~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQ 781 (913)
T KOG0495|consen 703 MAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQ 781 (913)
T ss_pred HHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99888876654 3 45678777777777888889999998887664 44566788888888889999999988888877
Q ss_pred cCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHH
Q 007517 357 KYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAMPFEPDAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILL 436 (600)
Q Consensus 357 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 436 (600)
+ .+.+-..|..-|.+..+.++-..+...+++. +.|+...-++...+.....++.|...|++++..+|++..++..+
T Consensus 782 e--cp~sg~LWaEaI~le~~~~rkTks~DALkkc--e~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~f 857 (913)
T KOG0495|consen 782 E--CPSSGLLWAEAIWLEPRPQRKTKSIDALKKC--EHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWF 857 (913)
T ss_pred h--CCccchhHHHHHHhccCcccchHHHHHHHhc--cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHH
Confidence 5 3566778888888888888877777777665 34666666777778888899999999999999999999999999
Q ss_pred HHHHHhcCCchHHHHHHHHHHhCCCccCCceeEEEeCC
Q 007517 437 SNIYASQGRFHDVAELRKNMRKRNVIKPPGCSWIEVEK 474 (600)
Q Consensus 437 ~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~ 474 (600)
...+...|.-++-.++++..... .|.-|..|+.+..
T Consensus 858 ykfel~hG~eed~kev~~~c~~~--EP~hG~~W~avSK 893 (913)
T KOG0495|consen 858 YKFELRHGTEEDQKEVLKKCETA--EPTHGELWQAVSK 893 (913)
T ss_pred HHHHHHhCCHHHHHHHHHHHhcc--CCCCCcHHHHHhh
Confidence 99999999999999999877654 3556667765543
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.58 E-value=9.8e-13 Score=124.70 Aligned_cols=449 Identities=11% Similarity=0.118 Sum_probs=291.9
Q ss_pred HHHHHHHHHcCCCHHHHHHHHccCCCCCcc-----hHHHHHHHHHhcCChHHHHHHHhhCCC--CC------cccHHHHH
Q 007517 40 WTVMLGGFIRDSRIDDARRLFDMMPEKDVV-----AQTNMVLGYCQDGRVDEGREIFDEMPK--KN------VISWTTMI 106 (600)
Q Consensus 40 ~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~-----~~~~li~~~~~~g~~~~A~~~~~~m~~--~~------~~~~~~li 106 (600)
...|.+-|.......+|+..|+-+.+...+ .-..+.+.+.+...+.+|++.++-... |+ +...|.+.
T Consensus 204 l~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nig 283 (840)
T KOG2003|consen 204 LFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIG 283 (840)
T ss_pred HHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcC
Confidence 344556677777788999888877643222 222345667888899999998875543 22 23455566
Q ss_pred HHHHhCCChHHHHHHHhhcCC--CCcchHHHHHHHHhcCCChHHHHHHHhhCC----CCCc--------cchhHHHHHHH
Q 007517 107 SGYVNNNRIDVARKLFEVMPE--KNEVSWTAMLMGYTQCGRIQDAWELFKAMP----MKSV--------VASNSMILGLG 172 (600)
Q Consensus 107 ~~~~~~g~~~~A~~~~~~m~~--p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~----~~~~--------~~~~~li~~~~ 172 (600)
-.+.+.|+++.|+..|+...+ ||..+-..|+-++..-|+-++.++.|..++ .+|. ..-..|++--.
T Consensus 284 vtfiq~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai 363 (840)
T KOG2003|consen 284 VTFIQAGQYDDAINSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAI 363 (840)
T ss_pred eeEEecccchhhHhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHH
Confidence 678899999999999998766 988877777777778899999999999887 1111 11122332222
Q ss_pred h---------cCC--HHHHH----HHHHhcccCChh---hHH------------------HHHHHHHHcCChHHHHHHHH
Q 007517 173 Q---------NGE--VQKAR----VVFDQMREKDDA---TWS------------------GMIKVYERKGYELEVIDLFT 216 (600)
Q Consensus 173 ~---------~g~--~~~A~----~~f~~~~~~~~~---~~~------------------~li~~~~~~g~~~~A~~~~~ 216 (600)
+ .++ .++++ ++..-...+|-. -|. .-...|.++|+++.|+++++
T Consensus 364 ~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilk 443 (840)
T KOG2003|consen 364 KNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILK 443 (840)
T ss_pred hhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHH
Confidence 2 221 11221 111111122210 011 11235789999999999999
Q ss_pred HHHHcCCccCchhHhhH--HHHHhhhcchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHhhhhhcCCCCHH
Q 007517 217 LMQKEGVRVNFPSLISV--LSVCASLASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFASKDIV 294 (600)
Q Consensus 217 ~m~~~g~~p~~~t~~~l--l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~ 294 (600)
-+.+..-+.-...-+.+ +.-.-.-.++..|.++-...+... ..+....+.-.+.-...|++++|.+.|.+....|..
T Consensus 444 v~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndas 522 (840)
T KOG2003|consen 444 VFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDAS 522 (840)
T ss_pred HHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchH
Confidence 88776433332222222 222222335666666665554332 122222222223334579999999999999888776
Q ss_pred HHHHHH---HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHH
Q 007517 295 MWNSII---SGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMV 371 (600)
Q Consensus 295 ~~~~li---~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li 371 (600)
.-.+|. -.+-..|+.++|++.|-++..- +.-+...+..+...|....+..+|.+++.+... -++.|+.+.+-|.
T Consensus 523 c~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~s--lip~dp~ilskl~ 599 (840)
T KOG2003|consen 523 CTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANS--LIPNDPAILSKLA 599 (840)
T ss_pred HHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcc--cCCCCHHHHHHHH
Confidence 554443 3467789999999999887542 344556777788888888999999999987765 4677899999999
Q ss_pred HHHhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHH
Q 007517 372 DLLGRAGQVEDAMKLIEAM-PF-EPDAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDV 449 (600)
Q Consensus 372 ~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 449 (600)
+.|-+.|+-.+|.+..-.- .. +-+..+..-|..-|....-.+++..+|+++.-+.|+-...-..++.++.+.|++..|
T Consensus 600 dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka 679 (840)
T KOG2003|consen 600 DLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKA 679 (840)
T ss_pred HHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHH
Confidence 9999999999999875443 32 335556555666677777789999999999999998866666677778899999999
Q ss_pred HHHHHHHHhCCCccCCceeEEEeCCEEEEEEcCCCCCCCChHHHHHHHHHH
Q 007517 450 AELRKNMRKRNVIKPPGCSWIEVEKKVHMFTGRDCVSHPEHPMIMRMLEKI 500 (600)
Q Consensus 450 ~~~~~~m~~~g~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~~~~~~l~~l 500 (600)
..+++...++ ++.+..|.-.. .-++||.. -...++...+|+++
T Consensus 680 ~d~yk~~hrk-fpedldclkfl------vri~~dlg-l~d~key~~klek~ 722 (840)
T KOG2003|consen 680 FDLYKDIHRK-FPEDLDCLKFL------VRIAGDLG-LKDAKEYADKLEKA 722 (840)
T ss_pred HHHHHHHHHh-CccchHHHHHH------HHHhcccc-chhHHHHHHHHHHH
Confidence 9999988754 33333331100 01345544 45555665556444
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.57 E-value=4.1e-11 Score=114.63 Aligned_cols=444 Identities=12% Similarity=0.157 Sum_probs=328.2
Q ss_pred hHHHHHHHHHhCCChHHHHHHHhhCCC---CCcchHHHHHHHHHcCCCHHHHHHHHccCC---CCCcchHHHHHHHHHhc
Q 007517 8 SWTAMVRGYVEEGMITEAGTLFWQMPE---KNVVSWTVMLGGFIRDSRIDDARRLFDMMP---EKDVVAQTNMVLGYCQD 81 (600)
Q Consensus 8 ~~~~ll~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~ 81 (600)
.|-...+.=-..+++..|..+|++.+. .+...|-..+.+=.++..+..|+.++++.. ++=...|-..+.+--..
T Consensus 75 ~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~L 154 (677)
T KOG1915|consen 75 VWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEML 154 (677)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHh
Confidence 444444445567788899999999884 456678888888889999999999999876 23335566666677778
Q ss_pred CChHHHHHHHhhCCC--CCcccHHHHHHHHHhCCChHHHHHHHhhcCC--CCcchHHHHHHHHhcCCChHHHHHHHhhCC
Q 007517 82 GRVDEGREIFDEMPK--KNVISWTTMISGYVNNNRIDVARKLFEVMPE--KNEVSWTAMLMGYTQCGRIQDAWELFKAMP 157 (600)
Q Consensus 82 g~~~~A~~~~~~m~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~ 157 (600)
|++..|+++|++-.+ |+..+|++.|+.=.+....+.|..++++..- |+..+|.-....-.+.|....+.++|+.++
T Consensus 155 gNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAi 234 (677)
T KOG1915|consen 155 GNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAI 234 (677)
T ss_pred cccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 999999999998654 9999999999999999999999999999877 999999999998899999999999999887
Q ss_pred ------CCCccchhHHHHHHHhcCCHHHHHHHHHhcccC-----ChhhHHHHHHHHHHcCChHHHHHH--------HHHH
Q 007517 158 ------MKSVVASNSMILGLGQNGEVQKARVVFDQMREK-----DDATWSGMIKVYERKGYELEVIDL--------FTLM 218 (600)
Q Consensus 158 ------~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~--------~~~m 218 (600)
..+...+.++...=.++..++.|.-+|.-..+. ....|.....---+.|+.....+. |+.+
T Consensus 235 e~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~ 314 (677)
T KOG1915|consen 235 EFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKE 314 (677)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHH
Confidence 223345556666666788888898888655431 234455555555556665443332 2333
Q ss_pred HHcCCccCchhHhhHHHHHhhhcchHHHHHHHHHHHHcCCCCch--hhHHHHHHH--------HHHcCCHHHHHhhhhhc
Q 007517 219 QKEGVRVNFPSLISVLSVCASLASLDHGRQVHAQLVRCQFDVDV--YVASVLITM--------YIKCGELVKGKLIFDNF 288 (600)
Q Consensus 219 ~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~li~~--------y~~~g~~~~A~~~~~~~ 288 (600)
...+ +-|-.++--.+..-...|+.+..+++++.++..- +|-. ..+.-.|-. =....+++.+.++|+..
T Consensus 315 v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIanv-pp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~ 392 (677)
T KOG1915|consen 315 VSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIANV-PPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQAC 392 (677)
T ss_pred HHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccC-CchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 3332 4466677777777788899999999999988754 3321 112222211 12467888888888765
Q ss_pred CC---CCHHHHHHHHH----HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCC
Q 007517 289 AS---KDIVMWNSIIS----GYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVE 361 (600)
Q Consensus 289 ~~---~~~~~~~~li~----~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~ 361 (600)
.+ ....|+.-+-- --.++.+...|.+++...+ |.-|-..+|...|..=.+.+.++..+.+++...+- + +
T Consensus 393 l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~-~-P 468 (677)
T KOG1915|consen 393 LDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEF-S-P 468 (677)
T ss_pred HhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhc-C-h
Confidence 43 33344444433 3446788999999998876 67899999999999989999999999999998873 2 4
Q ss_pred CChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHH
Q 007517 362 PKTEHYACMVDLLGRAGQVEDAMKLIEAMPFEP----DAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLS 437 (600)
Q Consensus 362 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 437 (600)
.+..+|.-....=...|+.+.|..+|+-.-.+| -...|.+.|+--...|.++.|..+++++++..+... .+...+
T Consensus 469 e~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~k-vWisFA 547 (677)
T KOG1915|consen 469 ENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVK-VWISFA 547 (677)
T ss_pred HhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccch-HHHhHH
Confidence 567888888888889999999999999773244 356788888888899999999999999999887653 565555
Q ss_pred HHHH-----hcC-----------CchHHHHHHHHHHh
Q 007517 438 NIYA-----SQG-----------RFHDVAELRKNMRK 458 (600)
Q Consensus 438 ~~~~-----~~g-----------~~~~a~~~~~~m~~ 458 (600)
.-=. ..| ....|.++|+....
T Consensus 548 ~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~ 584 (677)
T KOG1915|consen 548 KFEASASEGQEDEDLAELEITDENIKRARKIFERANT 584 (677)
T ss_pred HHhccccccccccchhhhhcchhHHHHHHHHHHHHHH
Confidence 4433 333 45567777776643
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.57 E-value=4.4e-11 Score=113.06 Aligned_cols=233 Identities=15% Similarity=0.185 Sum_probs=155.3
Q ss_pred HHhhCCCCCcccHHHHHHHHHhCCChHHHHHHHhhcCC----CCcchHHHHHHHHhcCCChHHHHHHHhhCC----CCCc
Q 007517 90 IFDEMPKKNVISWTTMISGYVNNNRIDVARKLFEVMPE----KNEVSWTAMLMGYTQCGRIQDAWELFKAMP----MKSV 161 (600)
Q Consensus 90 ~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~----~~~~ 161 (600)
++-+...+...++..||.|+++--..+.|.+++++-.. .+..+||.+|.+-.- ..++.+..+|. .||.
T Consensus 198 L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~----~~~K~Lv~EMisqkm~Pnl 273 (625)
T KOG4422|consen 198 LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY----SVGKKLVAEMISQKMTPNL 273 (625)
T ss_pred HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh----hccHHHHHHHHHhhcCCch
Confidence 33333344667888899999988888899998888766 667788888776443 33356666665 7888
Q ss_pred cchhHHHHHHHhcCCHHHHHHHH----Hhcc----cCChhhHHHHHHHHHHcCChHH-HHHHHHHHHHc--C--Ccc---
Q 007517 162 VASNSMILGLGQNGEVQKARVVF----DQMR----EKDDATWSGMIKVYERKGYELE-VIDLFTLMQKE--G--VRV--- 225 (600)
Q Consensus 162 ~~~~~li~~~~~~g~~~~A~~~f----~~~~----~~~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~--g--~~p--- 225 (600)
.++|+++.+..+.|+++.|++.+ .+|. +|...+|..+|..+.+.+++.+ |..++.+.+.. | .+|
T Consensus 274 ~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p 353 (625)
T KOG4422|consen 274 FTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITP 353 (625)
T ss_pred HhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCC
Confidence 88888888888888877766544 4443 4677788888888888777754 44444444432 2 222
Q ss_pred -CchhHhhHHHHHhhhcchHHHHHHHHHHHHcC----CCCc---hhhHHHHHHHHHHcCCHHHHHhhhhhcCC----CCH
Q 007517 226 -NFPSLISVLSVCASLASLDHGRQVHAQLVRCQ----FDVD---VYVASVLITMYIKCGELVKGKLIFDNFAS----KDI 293 (600)
Q Consensus 226 -~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~~~~---~~~~~~li~~y~~~g~~~~A~~~~~~~~~----~~~ 293 (600)
|...|.+.++.|.+..+.+.|.+++....... +.++ ..-|..+....+....++.-...|+.|.. |+.
T Consensus 354 ~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~ 433 (625)
T KOG4422|consen 354 TDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHS 433 (625)
T ss_pred chhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCc
Confidence 34557778888888888888888887665421 1222 23445566666777777777777777654 455
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 007517 294 VMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMP 326 (600)
Q Consensus 294 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 326 (600)
.+-..++.+....|.++-.-+++.+|...|..-
T Consensus 434 ~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~ 466 (625)
T KOG4422|consen 434 QTMIHLLRALDVANRLEVIPRIWKDSKEYGHTF 466 (625)
T ss_pred hhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhh
Confidence 555556666666677766667777766665333
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.56 E-value=4.6e-11 Score=114.19 Aligned_cols=192 Identities=10% Similarity=0.112 Sum_probs=151.1
Q ss_pred hhhHHHHHHHHHHcCCHHHHHhhhhhcCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007517 262 VYVASVLITMYIKCGELVKGKLIFDNFAS---KDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSAC 338 (600)
Q Consensus 262 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 338 (600)
+.+...+.+-|+-.++.++|...|++... +-...|+.|..-|....+...|++-++..++-. +-|...|-.+-++|
T Consensus 330 ~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~DyRAWYGLGQaY 408 (559)
T KOG1155|consen 330 PETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-PRDYRAWYGLGQAY 408 (559)
T ss_pred ccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-chhHHHHhhhhHHH
Confidence 34555566777788888999999988765 345789999999999999999999999988742 44566888999999
Q ss_pred hccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCHHHHH
Q 007517 339 SYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM--PFEPDAIIWGSLLGACRTHMKLDLAE 416 (600)
Q Consensus 339 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~ 416 (600)
.-.+...-|.-+|++...- -+.|...|.+|.+.|.+.+++++|.+-|.+. .-..+...+..|...+.+.++.++|.
T Consensus 409 eim~Mh~YaLyYfqkA~~~--kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa 486 (559)
T KOG1155|consen 409 EIMKMHFYALYYFQKALEL--KPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAA 486 (559)
T ss_pred HHhcchHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHH
Confidence 9999999999999888762 3557889999999999999999999999887 11335577888899999999999999
Q ss_pred HHHHHHhc-------cCCCCCchHHHHHHHHHhcCCchHHHHHHHHH
Q 007517 417 VAAKKLLQ-------LEPKNAGPYILLSNIYASQGRFHDVAELRKNM 456 (600)
Q Consensus 417 ~~~~~~~~-------~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 456 (600)
..+++-++ .+|....+...|+.-+.+.+++++|..+-...
T Consensus 487 ~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~ 533 (559)
T KOG1155|consen 487 QYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLV 533 (559)
T ss_pred HHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Confidence 99888776 33433344556788888899999988765543
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.54 E-value=9.6e-12 Score=128.11 Aligned_cols=323 Identities=16% Similarity=0.194 Sum_probs=186.9
Q ss_pred CChHHHHHHHhhCC---CCCccchhHHHHHHHhcCCHHHHHHHHHhcc---cCChhhHHHHHHHHHHcCChHHHHHHHHH
Q 007517 144 GRIQDAWELFKAMP---MKSVVASNSMILGLGQNGEVQKARVVFDQMR---EKDDATWSGMIKVYERKGYELEVIDLFTL 217 (600)
Q Consensus 144 g~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 217 (600)
|++++|..++.+++ +.....|.+|...|-..|+.+++...+-... ..|...|..+.....+.|++++|.-.|.+
T Consensus 153 g~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~r 232 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYSR 232 (895)
T ss_pred CCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 44444444444444 3333444444444444444444444332222 12344444444444444445555444444
Q ss_pred HHHcCCccCchhHhhHHHHHhhhcchHHHHHHHHHHHHcCCCCchhhHHH----HHHHHHHcCCHHHHHhhhhhcCC--C
Q 007517 218 MQKEGVRVNFPSLISVLSVCASLASLDHGRQVHAQLVRCQFDVDVYVASV----LITMYIKCGELVKGKLIFDNFAS--K 291 (600)
Q Consensus 218 m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----li~~y~~~g~~~~A~~~~~~~~~--~ 291 (600)
..+.. +++...+---...|-+.|+...|..-+.++.....+.|..-... .+..|...++-+.|.+.++.... .
T Consensus 233 AI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~ 311 (895)
T KOG2076|consen 233 AIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEK 311 (895)
T ss_pred HHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhcc
Confidence 44432 22222222333344444444444444444444332222111111 23334444444555555554433 1
Q ss_pred ---CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC---------------------------CCCCHHHHHHHHHHHhcc
Q 007517 292 ---DIVMWNSIISGYAQYGLGEKSLKVFHEMFSSG---------------------------VMPDDVTLVGVLSACSYT 341 (600)
Q Consensus 292 ---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---------------------------~~p~~~t~~~ll~a~~~~ 341 (600)
+...++.++..|.....++.|......+.... +.++...+ -+.-++.+.
T Consensus 312 ~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~-rl~icL~~L 390 (895)
T KOG2076|consen 312 DEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVI-RLMICLVHL 390 (895)
T ss_pred ccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhH-hHhhhhhcc
Confidence 23445666666666666666666666665521 12222221 122233444
Q ss_pred CCHHHHHHHHHHhHhcCC--CCCChHHHHHHHHHHhhcCCHHHHHHHHHhC---CCCCCHHHHHHHHHHHHHcCCHHHHH
Q 007517 342 GKVKEGREIFESMKSKYL--VEPKTEHYACMVDLLGRAGQVEDAMKLIEAM---PFEPDAIIWGSLLGACRTHMKLDLAE 416 (600)
Q Consensus 342 g~~~~a~~~~~~~~~~~~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~p~~~~~~~ll~~~~~~g~~~~a~ 416 (600)
...+....+......+ . ..-+...|.-+.++|...|++.+|+++|..+ +...+...|--+..+|...|.++.|.
T Consensus 391 ~~~e~~e~ll~~l~~~-n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~ 469 (895)
T KOG2076|consen 391 KERELLEALLHFLVED-NVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAI 469 (895)
T ss_pred cccchHHHHHHHHHHh-cCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHH
Confidence 4444444444444443 3 3335788999999999999999999999988 22335789999999999999999999
Q ss_pred HHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCCccCCceeE
Q 007517 417 VAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMRKRNVIKPPGCSW 469 (600)
Q Consensus 417 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~ 469 (600)
+.+++++.+.|++...-..|+.+|...|+.++|.+++..|..-+-...+++.|
T Consensus 470 e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~ 522 (895)
T KOG2076|consen 470 EFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAW 522 (895)
T ss_pred HHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccc
Confidence 99999999999999999999999999999999999999886433333355555
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.6e-11 Score=124.58 Aligned_cols=274 Identities=12% Similarity=0.095 Sum_probs=164.4
Q ss_pred cCCHHHHHHHHHhcccC--Chh-hHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCchhHh--hHHHHHhhhcchHHHHH
Q 007517 174 NGEVQKARVVFDQMREK--DDA-TWSGMIKVYERKGYELEVIDLFTLMQKEGVRVNFPSLI--SVLSVCASLASLDHGRQ 248 (600)
Q Consensus 174 ~g~~~~A~~~f~~~~~~--~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~--~ll~~~~~~~~~~~a~~ 248 (600)
.|+++.|++.+....+. ++. .+.....+..+.|+++.|...|.++.+. .|+..... .....+...|+.+.|..
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 46666666666655432 122 2222233335667777777777766553 34443222 22345556677777777
Q ss_pred HHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHhhhhhcCCC---CH--------HHHHHHHHHHHhcCChHHHHHHHH
Q 007517 249 VHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFASK---DI--------VMWNSIISGYAQYGLGEKSLKVFH 317 (600)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---~~--------~~~~~li~~~~~~g~~~~A~~~~~ 317 (600)
.++.+.+.. |.++.+...+...|.+.|++++|.+++..+.+. +. .+|..++.......+.+...++++
T Consensus 175 ~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~ 253 (398)
T PRK10747 175 GVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK 253 (398)
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 777766655 445666667777777777777777776666542 11 123333333333444455555555
Q ss_pred HHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-
Q 007517 318 EMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM-PFEPD- 395 (600)
Q Consensus 318 ~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~- 395 (600)
+.-+. .+.+......+..++...|+.++|.++++...+. +|+.... ++......|+.+++.+.+++. ...|+
T Consensus 254 ~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~---~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~~ 327 (398)
T PRK10747 254 NQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR---QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGDT 327 (398)
T ss_pred hCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCCC
Confidence 54332 2345556666777777777888887777776653 3444322 222223447777777777766 33443
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHHH
Q 007517 396 AIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMR 457 (600)
Q Consensus 396 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 457 (600)
+....++...|...+++++|...|+++++..|++ ..+..++.++.+.|+.++|.+++++-.
T Consensus 328 ~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~-~~~~~La~~~~~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 328 PLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDA-YDYAWLADALDRLHKPEEAAAMRRDGL 388 (398)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4456677777778888888888888888887776 566778888888888888877777553
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.50 E-value=7.4e-10 Score=104.93 Aligned_cols=409 Identities=14% Similarity=0.126 Sum_probs=274.1
Q ss_pred CcchHHHHHHHHHcCCCHHHHHHHHccCCCCCcc----hHHH---HHHHHHhcCChHHHHHHHhhCCC---CCcccHHHH
Q 007517 36 NVVSWTVMLGGFIRDSRIDDARRLFDMMPEKDVV----AQTN---MVLGYCQDGRVDEGREIFDEMPK---KNVISWTTM 105 (600)
Q Consensus 36 ~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~----~~~~---li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~l 105 (600)
.+.+-|.|+++- ..|.+.++.-+|+.|...++. .-.. |+..|-...-.=.-.+.|-.|.+ .+..+|
T Consensus 115 ~V~~E~nL~kmI-S~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sW--- 190 (625)
T KOG4422|consen 115 QVETENNLLKMI-SSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSW--- 190 (625)
T ss_pred hhcchhHHHHHH-hhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccccccccc---
Confidence 345778888765 468899999999999854332 1222 33333333333233455656654 455566
Q ss_pred HHHHHhCCChHHHHHHHhhcCCCCcchHHHHHHHHhcCCChHHHHHHHhhCC----CCCccchhHHHHHHHhcCCHHHHH
Q 007517 106 ISGYVNNNRIDVARKLFEVMPEKNEVSWTAMLMGYTQCGRIQDAWELFKAMP----MKSVVASNSMILGLGQNGEVQKAR 181 (600)
Q Consensus 106 i~~~~~~g~~~~A~~~~~~m~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~ 181 (600)
+.|...+ ++-+..-....|+.++|.+.++--..+.|.+++++.. ..+..++|.+|.+-.-.-. .
T Consensus 191 -----K~G~vAd---L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K 258 (625)
T KOG4422|consen 191 -----KSGAVAD---LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----K 258 (625)
T ss_pred -----ccccHHH---HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----H
Confidence 3454433 4444444566899999999999999999999999887 4556677888765432222 5
Q ss_pred HHHHhcc----cCChhhHHHHHHHHHHcCChHH----HHHHHHHHHHcCCccCchhHhhHHHHHhhhcchHH-HHHHHHH
Q 007517 182 VVFDQMR----EKDDATWSGMIKVYERKGYELE----VIDLFTLMQKEGVRVNFPSLISVLSVCASLASLDH-GRQVHAQ 252 (600)
Q Consensus 182 ~~f~~~~----~~~~~~~~~li~~~~~~g~~~~----A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~-a~~~~~~ 252 (600)
++..+|. .||..|+|++++...+.|+++. |++++.+|++-|+.|...+|..+|..+.+.++..+ +..++..
T Consensus 259 ~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~d 338 (625)
T KOG4422|consen 259 KLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWIND 338 (625)
T ss_pred HHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHH
Confidence 5666665 5799999999999999998865 57788999999999999999999999888877644 4455555
Q ss_pred HHHc----CC----CCchhhHHHHHHHHHHcCCHHHHHhhhhhcCCC-----------CHHHHHHHHHHHHhcCChHHHH
Q 007517 253 LVRC----QF----DVDVYVASVLITMYIKCGELVKGKLIFDNFASK-----------DIVMWNSIISGYAQYGLGEKSL 313 (600)
Q Consensus 253 ~~~~----~~----~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~-----------~~~~~~~li~~~~~~g~~~~A~ 313 (600)
+... .+ +.|...+...++.+.+..+.+-|.++-.-.... ...-|..+....++....+.-+
T Consensus 339 I~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~ 418 (625)
T KOG4422|consen 339 IQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTL 418 (625)
T ss_pred HHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5432 22 334556666777777889999998887655432 2245666788888999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcC-C--------HHH--
Q 007517 314 KVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAG-Q--------VED-- 382 (600)
Q Consensus 314 ~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-~--------~~~-- 382 (600)
.+|+.|.-.-+-|+..+...+++|....|.++-..+++..++. +|..-+.....-+...+++.. . +..
T Consensus 419 ~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~-~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ 497 (625)
T KOG4422|consen 419 KWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKE-YGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAF 497 (625)
T ss_pred HHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHH-hhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHH
Confidence 9999999888889999999999999999999988888887775 343333333333334444333 1 111
Q ss_pred ---HHHHHH-------hC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc---CCCCCc--hHHHHHHHHHhcCCc
Q 007517 383 ---AMKLIE-------AM-PFEPDAIIWGSLLGACRTHMKLDLAEVAAKKLLQL---EPKNAG--PYILLSNIYASQGRF 446 (600)
Q Consensus 383 ---A~~~~~-------~m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~p~~~~--~~~~l~~~~~~~g~~ 446 (600)
|..+++ ++ ...-.....+...-.+.+.|..++|.+++....+. -|..|. +...+.+.-......
T Consensus 498 ak~aad~~e~~e~~~~R~r~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~sp 577 (625)
T KOG4422|consen 498 AKCAADIKEAYESQPIRQRAQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSP 577 (625)
T ss_pred HHHHHHHHHHHHhhHHHHHhccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCH
Confidence 111111 11 12223445555666677888888888888877542 233322 223445555566677
Q ss_pred hHHHHHHHHHHhCCC
Q 007517 447 HDVAELRKNMRKRNV 461 (600)
Q Consensus 447 ~~a~~~~~~m~~~g~ 461 (600)
..|..+++.|...+.
T Consensus 578 sqA~~~lQ~a~~~n~ 592 (625)
T KOG4422|consen 578 SQAIEVLQLASAFNL 592 (625)
T ss_pred HHHHHHHHHHHHcCc
Confidence 778888887766554
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.4e-11 Score=115.79 Aligned_cols=213 Identities=16% Similarity=0.166 Sum_probs=170.1
Q ss_pred hcchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHhhhhhcCC---CCHHHHHHHHHHHHhcCChHHHHHHH
Q 007517 240 LASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFAS---KDIVMWNSIISGYAQYGLGEKSLKVF 316 (600)
Q Consensus 240 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~ 316 (600)
.|+.-.+.+-++.+++.... +...|--+..+|....+.++-.+.|+.... .|..+|..-...+.-.+++++|+.=|
T Consensus 339 ~g~~~~a~~d~~~~I~l~~~-~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF 417 (606)
T KOG0547|consen 339 KGDSLGAQEDFDAAIKLDPA-FNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADF 417 (606)
T ss_pred cCCchhhhhhHHHHHhcCcc-cchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHH
Confidence 46777788888888876533 333366677788889999999999987654 46667777777777788999999999
Q ss_pred HHHHHCCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC
Q 007517 317 HEMFSSGVMPDD-VTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM-PFEP 394 (600)
Q Consensus 317 ~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p 394 (600)
++.+. +.|+. ..|..+--+..+.+.++++...|+..+++ ++.-+++|+-....+...++++.|.+.|+.. .++|
T Consensus 418 ~Kai~--L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk--FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~ 493 (606)
T KOG0547|consen 418 QKAIS--LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK--FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEP 493 (606)
T ss_pred HHHhh--cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhcc
Confidence 99887 45654 46777777777889999999999999986 4666899999999999999999999999876 3344
Q ss_pred C---------HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007517 395 D---------AIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMRK 458 (600)
Q Consensus 395 ~---------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 458 (600)
+ +.+-.+++-.-.+ +++..|+.+++++++++|.....|..|+..-...|+.++|.++|++-..
T Consensus 494 ~~~~~~v~~~plV~Ka~l~~qwk-~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 494 REHLIIVNAAPLVHKALLVLQWK-EDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred ccccccccchhhhhhhHhhhchh-hhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3 3333333333333 8999999999999999999989999999999999999999999997653
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.3e-10 Score=117.98 Aligned_cols=281 Identities=14% Similarity=0.055 Sum_probs=177.3
Q ss_pred CCChHHHHHHHhhcCC-C-Ccch-HHHHHHHHhcCCChHHHHHHHhhCC--CCCccchh--HHHHHHHhcCCHHHHHHHH
Q 007517 112 NNRIDVARKLFEVMPE-K-NEVS-WTAMLMGYTQCGRIQDAWELFKAMP--MKSVVASN--SMILGLGQNGEVQKARVVF 184 (600)
Q Consensus 112 ~g~~~~A~~~~~~m~~-p-~~~t-~~~ll~~~~~~g~~~~a~~~~~~~~--~~~~~~~~--~li~~~~~~g~~~~A~~~f 184 (600)
.|+++.|.+.+....+ . ++.. |.....+....|+++.|.+.+.++. .++..... .....+...|+.+.|...+
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l 176 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGV 176 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4666666655555433 1 1222 2222233355566666666665555 22222111 2234555556666665555
Q ss_pred HhcccC---ChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCchhHhhHHHHHhhhcchHHHHHHHHHHHHcCCCCc
Q 007517 185 DQMREK---DDATWSGMIKVYERKGYELEVIDLFTLMQKEGVRVNFPSLISVLSVCASLASLDHGRQVHAQLVRCQFDVD 261 (600)
Q Consensus 185 ~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 261 (600)
++..+. ++.....+...|.+.|++++|++++..+.+.+..++. .+..+-
T Consensus 177 ~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~-~~~~l~--------------------------- 228 (398)
T PRK10747 177 DKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEE-HRAMLE--------------------------- 228 (398)
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHH-HHHHHH---------------------------
Confidence 555432 3444555555555555555555555555554322111 000000
Q ss_pred hhhHHHHHHHHHHcCCHHHHHhhhhhcCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007517 262 VYVASVLITMYIKCGELVKGKLIFDNFAS---KDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSAC 338 (600)
Q Consensus 262 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 338 (600)
...+..++....+..+.+...++++.++. .++.....+..++...|+.++|.+++++..+. .||.... ++.+.
T Consensus 229 ~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~ 304 (398)
T PRK10747 229 QQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPR 304 (398)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhh
Confidence 01222223333334455566666666654 47778888999999999999999999998874 5555322 33344
Q ss_pred hccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 007517 339 SYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM-PFEPDAIIWGSLLGACRTHMKLDLAEV 417 (600)
Q Consensus 339 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~a~~ 417 (600)
...++.+++.+..+...+++ +-|+..+.++..++.+.|++++|.+.|+.. ...|+...+..|...+...|+.++|..
T Consensus 305 l~~~~~~~al~~~e~~lk~~--P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~ 382 (398)
T PRK10747 305 LKTNNPEQLEKVLRQQIKQH--GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAA 382 (398)
T ss_pred ccCCChHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 45699999999999988764 456778889999999999999999999988 678999999999999999999999999
Q ss_pred HHHHHhccC
Q 007517 418 AAKKLLQLE 426 (600)
Q Consensus 418 ~~~~~~~~~ 426 (600)
++++.+.+.
T Consensus 383 ~~~~~l~~~ 391 (398)
T PRK10747 383 MRRDGLMLT 391 (398)
T ss_pred HHHHHHhhh
Confidence 999987753
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.47 E-value=5.2e-10 Score=107.25 Aligned_cols=452 Identities=15% Similarity=0.132 Sum_probs=334.4
Q ss_pred CCCcchHHHHHHHHHhCCChHHHHHHHhhCCC--CC-cchHHHHHHHHHcCCCHHHHHHHHccCC--CCCcchHHHHHHH
Q 007517 3 ERNVVSWTAMVRGYVEEGMITEAGTLFWQMPE--KN-VVSWTVMLGGFIRDSRIDDARRLFDMMP--EKDVVAQTNMVLG 77 (600)
Q Consensus 3 ~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~--~~-~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~li~~ 77 (600)
.+|...|-..+..=.++.....|..++++... |- -..|-..+.+=-..|++..|+++|++-. +|+...|++.|..
T Consensus 104 ~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w~P~eqaW~sfI~f 183 (677)
T KOG1915|consen 104 YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIFERWMEWEPDEQAWLSFIKF 183 (677)
T ss_pred cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence 34566788888888899999999999998762 32 2356666666667899999999999876 7999999999999
Q ss_pred HHhcCChHHHHHHHhhCC--CCCcccHHHHHHHHHhCCChHHHHHHHhhcCC--CC----cchHHHHHHHHhcCCChHHH
Q 007517 78 YCQDGRVDEGREIFDEMP--KKNVISWTTMISGYVNNNRIDVARKLFEVMPE--KN----EVSWTAMLMGYTQCGRIQDA 149 (600)
Q Consensus 78 ~~~~g~~~~A~~~~~~m~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--p~----~~t~~~ll~~~~~~g~~~~a 149 (600)
-.+-..++.|+.++++.. .|++.+|---...=-++|+...|..+|....+ .| ...|++....-.++..++.|
T Consensus 184 ElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERa 263 (677)
T KOG1915|consen 184 ELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERA 263 (677)
T ss_pred HHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999854 59999998888888899999999999998877 33 33455555555567788899
Q ss_pred HHHHhhCC---CCC--ccchhHHHHHHHhcCCHH---HHHHH-----HHhcccC---ChhhHHHHHHHHHHcCChHHHHH
Q 007517 150 WELFKAMP---MKS--VVASNSMILGLGQNGEVQ---KARVV-----FDQMREK---DDATWSGMIKVYERKGYELEVID 213 (600)
Q Consensus 150 ~~~~~~~~---~~~--~~~~~~li~~~~~~g~~~---~A~~~-----f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~ 213 (600)
.-+|...+ +.+ ...|..+...=-+-|+-. +++-- ++.+... |-.+|-..+..-...|+.+...+
T Consensus 264 r~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire 343 (677)
T KOG1915|consen 264 RFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRE 343 (677)
T ss_pred HHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHH
Confidence 99998877 333 345555555555566543 33322 2333332 56778888888888999999999
Q ss_pred HHHHHHHcCCccCc-------hhHhhHHHHH---hhhcchHHHHHHHHHHHHcCCCCchhhHHHHHHHHH----HcCCHH
Q 007517 214 LFTLMQKEGVRVNF-------PSLISVLSVC---ASLASLDHGRQVHAQLVRCQFDVDVYVASVLITMYI----KCGELV 279 (600)
Q Consensus 214 ~~~~m~~~g~~p~~-------~t~~~ll~~~---~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~----~~g~~~ 279 (600)
+|++.... ++|-. ..|.-+=-+| ....+.+.+++++...++ -+|...+++..+=-+|+ ++.++.
T Consensus 344 ~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~-lIPHkkFtFaKiWlmyA~feIRq~~l~ 421 (677)
T KOG1915|consen 344 TYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD-LIPHKKFTFAKIWLMYAQFEIRQLNLT 421 (677)
T ss_pred HHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh-hcCcccchHHHHHHHHHHHHHHHcccH
Confidence 99999875 55532 1222222222 356789999999999998 35667788887766665 578999
Q ss_pred HHHhhhhhcCC--CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhc
Q 007517 280 KGKLIFDNFAS--KDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSK 357 (600)
Q Consensus 280 ~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 357 (600)
.|.+++..... |...++..-|..=.+.++++....+|++.++-+ +-|..++......=...|+.+.|+.+|.-....
T Consensus 422 ~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~q 500 (677)
T KOG1915|consen 422 GARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQ 500 (677)
T ss_pred HHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcC
Confidence 99999987654 677788888888889999999999999999863 445667877777777889999999999998876
Q ss_pred CCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHH-----HcC-----------CHHHHHHHHH
Q 007517 358 YLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM-PFEPDAIIWGSLLGACR-----THM-----------KLDLAEVAAK 420 (600)
Q Consensus 358 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~-----~~g-----------~~~~a~~~~~ 420 (600)
..+......|.+.|+.=...|.++.|..+++++ ...+...+|-++..--. +.+ +...|..+|+
T Consensus 501 p~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~ife 580 (677)
T KOG1915|consen 501 PALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVKVWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFE 580 (677)
T ss_pred cccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccchHHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHH
Confidence 444445677888999999999999999999988 44556668877765433 334 5678888998
Q ss_pred HHhc----cCCCCC--chHHHHHHHHHhcCCchHHHHHHHHHH
Q 007517 421 KLLQ----LEPKNA--GPYILLSNIYASQGRFHDVAELRKNMR 457 (600)
Q Consensus 421 ~~~~----~~p~~~--~~~~~l~~~~~~~g~~~~a~~~~~~m~ 457 (600)
++.. ..|... .......+.=...|...+...+-+.|-
T Consensus 581 rAn~~~k~~~~KeeR~~LLEaw~~~E~~~G~~~d~~~V~s~mP 623 (677)
T KOG1915|consen 581 RANTYLKESTPKEERLMLLEAWKNMEETFGTEGDVERVQSKMP 623 (677)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHhcc
Confidence 8775 233221 112223333445676666666666663
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.46 E-value=9.4e-11 Score=120.31 Aligned_cols=444 Identities=14% Similarity=0.096 Sum_probs=272.0
Q ss_pred CCCcchHHHHHHHHHhCCChHHHHHHHhhCC----CCCcchHHHHHHHHHcCCCHHHHHHHHccCCCCCcchHHHHHHHH
Q 007517 3 ERNVVSWTAMVRGYVEEGMITEAGTLFWQMP----EKNVVSWTVMLGGFIRDSRIDDARRLFDMMPEKDVVAQTNMVLGY 78 (600)
Q Consensus 3 ~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~----~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~ 78 (600)
.||.+||..+|.-|+..|+.+.|- +|..|. +-+...++.++.+....++.+.+. +|...+|++|..+|
T Consensus 22 ~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~aDtyt~Ll~ay 93 (1088)
T KOG4318|consen 22 LPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPLADTYTNLLKAY 93 (1088)
T ss_pred CCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCchhHHHHHHHHH
Confidence 588899999999999999999988 888887 235567888888888888877665 77888999999999
Q ss_pred HhcCChHH---HHHHHhhCCC---------C-------------CcccHHHHHHHHHhCCChHHHHHHHhhcCC--CCcc
Q 007517 79 CQDGRVDE---GREIFDEMPK---------K-------------NVISWTTMISGYVNNNRIDVARKLFEVMPE--KNEV 131 (600)
Q Consensus 79 ~~~g~~~~---A~~~~~~m~~---------~-------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--p~~~ 131 (600)
.+.||+.. .++.++.+.. + ....-...+...+-.|-++.+++++..+.. .+.
T Consensus 94 r~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~Pvsa~~~- 172 (1088)
T KOG4318|consen 94 RIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVPVSAWNA- 172 (1088)
T ss_pred HhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCCcccccc-
Confidence 99998754 2221221110 0 000112344455556777777777777655 111
Q ss_pred hHHHHHHHHhcCCC-hHHHHHHHhhCC-CCCccchhHHHHHHHhcCCHHHHHHHHHhcccC----ChhhHHHHHHHHHHc
Q 007517 132 SWTAMLMGYTQCGR-IQDAWELFKAMP-MKSVVASNSMILGLGQNGEVQKARVVFDQMREK----DDATWSGMIKVYERK 205 (600)
Q Consensus 132 t~~~ll~~~~~~g~-~~~a~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~----~~~~~~~li~~~~~~ 205 (600)
++..+++-+..... +++-...-.... .+++.++.+++..-...|+++.|..++.+|.++ +..-|-.++-+ .
T Consensus 173 p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~ 249 (1088)
T KOG4318|consen 173 PFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---I 249 (1088)
T ss_pred hHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---C
Confidence 22223555444333 333333333333 478888888999888899999999999999876 23334444444 7
Q ss_pred CChHHHHHHHHHHHHcCCccCchhHhhHHHHHhhhcchHHHHH-----------HHHHHHH-------------------
Q 007517 206 GYELEVIDLFTLMQKEGVRVNFPSLISVLSVCASLASLDHGRQ-----------VHAQLVR------------------- 255 (600)
Q Consensus 206 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~-----------~~~~~~~------------------- 255 (600)
++...+..+++-|+..|+.|+..|+...+..|.+.|....+.. +...+.+
T Consensus 250 ~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~~a~k~l~~nl~~~v~~s 329 (1088)
T KOG4318|consen 250 NAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGLLANKRLRQNLRKSVIGS 329 (1088)
T ss_pred ccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhcccHhHHHHHHHHHHHHHHH
Confidence 7777888888888889999999999888888877555333221 1111110
Q ss_pred ------cCCCCchhhHHHHHHHHHHcCCHHHHHhhhhhcCCC-------CHHHHHHHHHHHHhcCC--------------
Q 007517 256 ------CQFDVDVYVASVLITMYIKCGELVKGKLIFDNFASK-------DIVMWNSIISGYAQYGL-------------- 308 (600)
Q Consensus 256 ------~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~-------~~~~~~~li~~~~~~g~-------------- 308 (600)
.|+.....+|...+. ....|.-++..++-..+..| ++..|..++.-|.+.-+
T Consensus 330 ~k~~fLlg~d~~~aiws~c~~-l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyFrr~e~~~~~~i~~~~qgl 408 (1088)
T KOG4318|consen 330 TKKLFLLGTDILEAIWSMCEK-LRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYFRRIERHICSRIYYAGQGL 408 (1088)
T ss_pred hhHHHHhccccchHHHHHHHH-HHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 122222222222111 11245545555554444332 34444444433322110
Q ss_pred --------hHHHHHHHHHHHHCCCCCCHHH----------------------------HHHHHHHHhccCCHHHHHHHHH
Q 007517 309 --------GEKSLKVFHEMFSSGVMPDDVT----------------------------LVGVLSACSYTGKVKEGREIFE 352 (600)
Q Consensus 309 --------~~~A~~~~~~m~~~g~~p~~~t----------------------------~~~ll~a~~~~g~~~~a~~~~~ 352 (600)
..+..++... ..||..- -+.++..|...-+..+++..-+
T Consensus 409 s~~l~se~tp~vsell~~-----lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~se~n~lK~l~~~e 483 (1088)
T KOG4318|consen 409 SLNLNSEDTPRVSELLEN-----LRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLNSEYNKLKILCDEE 483 (1088)
T ss_pred HhhhchhhhHHHHHHHHH-----hCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111111111 1333211 1222223333333333333322
Q ss_pred HhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc--
Q 007517 353 SMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAMP-----FEPDAIIWGSLLGACRTHMKLDLAEVAAKKLLQL-- 425 (600)
Q Consensus 353 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-----~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-- 425 (600)
..... - -...|..||+.+......++|..+.++.. +.-|..-+..+.+...+++....+..+++.+.+.
T Consensus 484 kye~~-l---f~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e~ks~a~ 559 (1088)
T KOG4318|consen 484 KYEDL-L---FAGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTILYEDKSSAE 559 (1088)
T ss_pred HHHHH-H---hhhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHHHhhhhHHhh
Confidence 22221 1 13678999999999999999999999883 2335556788889999999999999999888773
Q ss_pred -CCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCCccCCceeE
Q 007517 426 -EPKNAGPYILLSNIYASQGRFHDVAELRKNMRKRNVIKPPGCSW 469 (600)
Q Consensus 426 -~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~ 469 (600)
.|.-...+..+.+.-+..|+.+...++++-+...|+.. .|.-|
T Consensus 560 n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~e-tgPl~ 603 (1088)
T KOG4318|consen 560 NEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSE-TGPLW 603 (1088)
T ss_pred CCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhh-cccce
Confidence 34444556678888889999999999999999988876 34444
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.4e-10 Score=118.29 Aligned_cols=142 Identities=11% Similarity=0.024 Sum_probs=92.1
Q ss_pred HHHHhhhhhcCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH---HHHHHHHhccCCHHHHHHHHH
Q 007517 279 VKGKLIFDNFAS---KDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTL---VGVLSACSYTGKVKEGREIFE 352 (600)
Q Consensus 279 ~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~---~~ll~a~~~~g~~~~a~~~~~ 352 (600)
+...+.++..+. ++...+..+...+...|+.++|.+.+++..+. .||.... ..........++.+.+.+.++
T Consensus 246 ~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e 323 (409)
T TIGR00540 246 DGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIE 323 (409)
T ss_pred HHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHHH
Confidence 344444444443 37777888888888888888888888888775 4444421 111112233466777777777
Q ss_pred HhHhcCCCCCCh--HHHHHHHHHHhhcCCHHHHHHHHHh--C-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 007517 353 SMKSKYLVEPKT--EHYACMVDLLGRAGQVEDAMKLIEA--M-PFEPDAIIWGSLLGACRTHMKLDLAEVAAKKLLQ 424 (600)
Q Consensus 353 ~~~~~~~~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~--m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 424 (600)
...+.. +-++ ....++...+.+.|++++|.+.|+. . ...|+...+..+...+.+.|+.++|.+++++.+.
T Consensus 324 ~~lk~~--p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 324 KQAKNV--DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HHHHhC--CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 766643 2233 5556777777777777777777773 2 4567777777777777777777777777777654
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.1e-11 Score=123.93 Aligned_cols=275 Identities=12% Similarity=0.035 Sum_probs=213.0
Q ss_pred CHHHHHHHHHhcccC--Ch-hhHHHHHHHHHHcCChHHHHHHHHHHHHcC-C-ccCchhHhhHHHHHhhhcchHHHHHHH
Q 007517 176 EVQKARVVFDQMREK--DD-ATWSGMIKVYERKGYELEVIDLFTLMQKEG-V-RVNFPSLISVLSVCASLASLDHGRQVH 250 (600)
Q Consensus 176 ~~~~A~~~f~~~~~~--~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~-~p~~~t~~~ll~~~~~~~~~~~a~~~~ 250 (600)
+..+|...|...++. |. .....+..+|...+++++|.++|+...+.. . .-+...|+++|-.+-+. .+...+
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~L 409 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSYL 409 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHHH
Confidence 467888888886643 33 334557788999999999999999988742 1 12456777777654321 122222
Q ss_pred HHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHhhhhhcCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 007517 251 AQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFASK---DIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPD 327 (600)
Q Consensus 251 ~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 327 (600)
.+-.-.--+..+.+|.++.++|+-.++.+.|.+.|++..+- ...+|+.+..-+.....+|.|...|+..+. +.|.
T Consensus 410 aq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~~~r 487 (638)
T KOG1126|consen 410 AQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG--VDPR 487 (638)
T ss_pred HHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--CCch
Confidence 22222223567889999999999999999999999998763 557888888889999999999999999864 4555
Q ss_pred HH-HHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHH
Q 007517 328 DV-TLVGVLSACSYTGKVKEGREIFESMKSKYLVEP-KTEHYACMVDLLGRAGQVEDAMKLIEAM-PFEP-DAIIWGSLL 403 (600)
Q Consensus 328 ~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll 403 (600)
.. .|..+...|.+.++++.|+-.|+.+.+ +.| +.....++...+-+.|+.|+|+++++++ -..| |+..--.-.
T Consensus 488 hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~---INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~ 564 (638)
T KOG1126|consen 488 HYNAWYGLGTVYLKQEKLEFAEFHFQKAVE---INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRA 564 (638)
T ss_pred hhHHHHhhhhheeccchhhHHHHHHHhhhc---CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHH
Confidence 43 677788889999999999999999876 345 5777888899999999999999999988 3333 455544555
Q ss_pred HHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007517 404 GACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMRKR 459 (600)
Q Consensus 404 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 459 (600)
..+...+++++|+..++++.++.|++...|..++.+|-+.|+.+.|..-|.-+.+.
T Consensus 565 ~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~l 620 (638)
T KOG1126|consen 565 SILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDL 620 (638)
T ss_pred HHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcC
Confidence 66777899999999999999999999999999999999999999999877766553
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.6e-11 Score=122.72 Aligned_cols=246 Identities=13% Similarity=0.078 Sum_probs=194.8
Q ss_pred CChHHHHHHHHHHHHcCCccCchhHhhHHHHHhhhcchHHHHHHHHHHHHcC--CCCchhhHHHHHHHHHHcCCHHHHHh
Q 007517 206 GYELEVIDLFTLMQKEGVRVNFPSLISVLSVCASLASLDHGRQVHAQLVRCQ--FDVDVYVASVLITMYIKCGELVKGKL 283 (600)
Q Consensus 206 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~y~~~g~~~~A~~ 283 (600)
-+..+|+..|...... +.-+......+..+|...+++++++.+|+.+.+.. .-.+..+|.+.+.-+-+.=.+..--+
T Consensus 333 y~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq 411 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQ 411 (638)
T ss_pred HHHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHH
Confidence 3567899999984443 34445677788899999999999999999998864 12456677776654433221111111
Q ss_pred hhhhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCC
Q 007517 284 IFDNFASKDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMP-DDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEP 362 (600)
Q Consensus 284 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p 362 (600)
-+-.+....+.+|.++...|.-+++.+.|++.|++..+ +.| ...+|+.+-.-+.....+|.|...|+.... .
T Consensus 412 ~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~-----~ 484 (638)
T KOG1126|consen 412 DLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG-----V 484 (638)
T ss_pred HHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc--cCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc-----C
Confidence 11222234678999999999999999999999999987 466 567887777777778889999999987653 5
Q ss_pred ChHHHHH---HHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHH
Q 007517 363 KTEHYAC---MVDLLGRAGQVEDAMKLIEAM-PFEP-DAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLS 437 (600)
Q Consensus 363 ~~~~~~~---li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 437 (600)
++.+|++ |.-.|.|.++++.|+-.|+++ .+.| +.+....+...+.+.|+.++|+++++++..++|.++..-...+
T Consensus 485 ~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~ 564 (638)
T KOG1126|consen 485 DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRA 564 (638)
T ss_pred CchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHH
Confidence 6666665 567899999999999999988 6777 5667777888899999999999999999999999999999999
Q ss_pred HHHHhcCCchHHHHHHHHHHhC
Q 007517 438 NIYASQGRFHDVAELRKNMRKR 459 (600)
Q Consensus 438 ~~~~~~g~~~~a~~~~~~m~~~ 459 (600)
.++...+++++|.+.++++++.
T Consensus 565 ~il~~~~~~~eal~~LEeLk~~ 586 (638)
T KOG1126|consen 565 SILFSLGRYVEALQELEELKEL 586 (638)
T ss_pred HHHHhhcchHHHHHHHHHHHHh
Confidence 9999999999999999999874
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.44 E-value=7.2e-10 Score=114.59 Aligned_cols=428 Identities=12% Similarity=0.085 Sum_probs=242.8
Q ss_pred HhCCChHHHHHHHhhCCC---CCcchHHHHHHHHHcCCCHHHHHHHHcc---CCCCCcchHHHHHHHHHhcCChHHHHHH
Q 007517 17 VEEGMITEAGTLFWQMPE---KNVVSWTVMLGGFIRDSRIDDARRLFDM---MPEKDVVAQTNMVLGYCQDGRVDEGREI 90 (600)
Q Consensus 17 ~~~g~~~~A~~~~~~m~~---~~~~~~~~ll~~~~~~g~~~~A~~~~~~---m~~~~~~~~~~li~~~~~~g~~~~A~~~ 90 (600)
.-.|++++|.+++.+++. .....|.+|...|-..|+.+++...+-. +.+.|...|..+.....+.|.++.|+-.
T Consensus 150 farg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~c 229 (895)
T KOG2076|consen 150 FARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYC 229 (895)
T ss_pred HHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHH
Confidence 344999999999988883 4556899999999999999998876543 3366778899999999999999999999
Q ss_pred HhhCCCCCcccHHH---HHHHHHhCCChHHHHHHHhhcCC--CC------cchHHHHHHHHhcCCChHHHHHHHhhCC--
Q 007517 91 FDEMPKKNVISWTT---MISGYVNNNRIDVARKLFEVMPE--KN------EVSWTAMLMGYTQCGRIQDAWELFKAMP-- 157 (600)
Q Consensus 91 ~~~m~~~~~~~~~~---li~~~~~~g~~~~A~~~~~~m~~--p~------~~t~~~ll~~~~~~g~~~~a~~~~~~~~-- 157 (600)
|.+..+.++.-|-. -+..|-+.|+...|.+.|.++.+ |. ..+.-.++..+...++-+.|.+.++...
T Consensus 230 y~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~ 309 (895)
T KOG2076|consen 230 YSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSK 309 (895)
T ss_pred HHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh
Confidence 99877644433433 35678888999999999998887 41 1233334556666676677877777666
Q ss_pred ---CCCccchhHHHHHHHhcCCHHHHHHHHHhccc----C----------------------------------------
Q 007517 158 ---MKSVVASNSMILGLGQNGEVQKARVVFDQMRE----K---------------------------------------- 190 (600)
Q Consensus 158 ---~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~----~---------------------------------------- 190 (600)
..+....+.++..|.+...++.|......+.. +
T Consensus 310 ~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~ 389 (895)
T KOG2076|consen 310 EKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVH 389 (895)
T ss_pred ccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhc
Confidence 23445567788888888877777766544332 1
Q ss_pred -----------------------ChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCchhHhhHHHHHhhhcchHHHH
Q 007517 191 -----------------------DDATWSGMIKVYERKGYELEVIDLFTLMQKEGVRVNFPSLISVLSVCASLASLDHGR 247 (600)
Q Consensus 191 -----------------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~ 247 (600)
++..|.-+..+|...|++.+|+.+|..+...-.--+.+.|..+..++-..|..++|.
T Consensus 390 L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~ 469 (895)
T KOG2076|consen 390 LKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAI 469 (895)
T ss_pred ccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHH
Confidence 111233344455555555555555555544322223344444555555555555555
Q ss_pred HHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHhhhhhcCCCCH------------HHHHHHHHHHHhcCChHHHHHH
Q 007517 248 QVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFASKDI------------VMWNSIISGYAQYGLGEKSLKV 315 (600)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~------------~~~~~li~~~~~~g~~~~A~~~ 315 (600)
+.++.++... |.+.-+--.|...|.+.|+.++|.+++..+..+|. ..--.....+.+.|+.++=+.+
T Consensus 470 e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t 548 (895)
T KOG2076|consen 470 EFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINT 548 (895)
T ss_pred HHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 5555555443 22233333444455555555555555555443331 1111122334445554444444
Q ss_pred HHHHHHCC-----CCCC-----------------HHHHHHHHHHHhccCCHHHHHHHHHH-----hHhcCCCCCC--hHH
Q 007517 316 FHEMFSSG-----VMPD-----------------DVTLVGVLSACSYTGKVKEGREIFES-----MKSKYLVEPK--TEH 366 (600)
Q Consensus 316 ~~~m~~~g-----~~p~-----------------~~t~~~ll~a~~~~g~~~~a~~~~~~-----~~~~~~~~p~--~~~ 366 (600)
-.+|.... +-|+ ..+.-.++.+-.+.++....++.... .....++.-+ -..
T Consensus 549 ~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel 628 (895)
T KOG2076|consen 549 ASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWFEL 628 (895)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHHHH
Confidence 43333211 0010 00111111111111111111110000 0000111111 134
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC----C-CCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHhcc-----CCCCCchH
Q 007517 367 YACMVDLLGRAGQVEDAMKLIEAM----P-FEPDA---IIWGSLLGACRTHMKLDLAEVAAKKLLQL-----EPKNAGPY 433 (600)
Q Consensus 367 ~~~li~~~~~~g~~~~A~~~~~~m----~-~~p~~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-----~p~~~~~~ 433 (600)
+.-++..+.+.|++++|+.+...+ - ..++. ..=...+.++...+++..|....+-++.. +|.-+..|
T Consensus 629 ~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l~ 708 (895)
T KOG2076|consen 629 FRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLNLW 708 (895)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 456778889999999999998877 1 12222 12234456677889999999999988875 55544455
Q ss_pred HHHHHHHHhcCC
Q 007517 434 ILLSNIYASQGR 445 (600)
Q Consensus 434 ~~l~~~~~~~g~ 445 (600)
+...+.....|+
T Consensus 709 n~~~s~~~~~~q 720 (895)
T KOG2076|consen 709 NLDFSYFSKYGQ 720 (895)
T ss_pred HHHHHHHHHHHH
Confidence 544445555443
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.6e-10 Score=116.45 Aligned_cols=279 Identities=14% Similarity=0.069 Sum_probs=179.2
Q ss_pred hcCCHHHHHHHHHhcccC--C-hhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCch--hHhhHHHHHhhhcchHHHH
Q 007517 173 QNGEVQKARVVFDQMREK--D-DATWSGMIKVYERKGYELEVIDLFTLMQKEGVRVNFP--SLISVLSVCASLASLDHGR 247 (600)
Q Consensus 173 ~~g~~~~A~~~f~~~~~~--~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~~~~~~~~~~~a~ 247 (600)
..|+++.|.+.+.+..+. + ...+-....++.+.|+++.|.+.|.+..+. .|+.. .-..........|+++.|.
T Consensus 96 ~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~--~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAEL--AGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred hCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 456666666666655432 1 222333345556667777777777666543 23332 2222355555667777777
Q ss_pred HHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHhhhhhcCCC---CHHHHH----HHHHHHHhcCChHHHHHHHHHHH
Q 007517 248 QVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFASK---DIVMWN----SIISGYAQYGLGEKSLKVFHEMF 320 (600)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~----~li~~~~~~g~~~~A~~~~~~m~ 320 (600)
..++.+.+.. |.++.+...+..+|.+.|++++|.+.+..+.+. +...+. ....++...+..+++.+.+.++.
T Consensus 174 ~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~ 252 (409)
T TIGR00540 174 HGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWW 252 (409)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 7777776665 445566677777777777777777777666532 222221 11112223333344445555555
Q ss_pred HCCC---CCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHH-HHHHHHHH--hhcCCHHHHHHHHHhC-CCC
Q 007517 321 SSGV---MPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEH-YACMVDLL--GRAGQVEDAMKLIEAM-PFE 393 (600)
Q Consensus 321 ~~g~---~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~-~~~li~~~--~~~g~~~~A~~~~~~m-~~~ 393 (600)
+... +.+...+..+...+...|+.++|.+.+++..++. |+... ...++..+ ...++.+.+.+.+++. ...
T Consensus 253 ~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~---pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~ 329 (409)
T TIGR00540 253 KNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL---GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV 329 (409)
T ss_pred HHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC---CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhC
Confidence 4321 1366777888889999999999999999998753 44321 10122222 3357788888888776 334
Q ss_pred CC-H--HHHHHHHHHHHHcCCHHHHHHHHH--HHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007517 394 PD-A--IIWGSLLGACRTHMKLDLAEVAAK--KLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMRK 458 (600)
Q Consensus 394 p~-~--~~~~~ll~~~~~~g~~~~a~~~~~--~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 458 (600)
|+ + ....++...+.+.|++++|.+.|+ .+.+..|++ ..+..++..+.+.|+.++|.+++++-..
T Consensus 330 p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~-~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 330 DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDA-NDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 43 3 567789999999999999999999 577788876 5577999999999999999999997543
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.4e-12 Score=126.42 Aligned_cols=250 Identities=15% Similarity=0.199 Sum_probs=97.9
Q ss_pred HHHHHHhcCCHHHHHHHHHhc-cc----CChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCchhHhhHHHHHhhhc
Q 007517 167 MILGLGQNGEVQKARVVFDQM-RE----KDDATWSGMIKVYERKGYELEVIDLFTLMQKEGVRVNFPSLISVLSVCASLA 241 (600)
Q Consensus 167 li~~~~~~g~~~~A~~~f~~~-~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~ 241 (600)
+...+.+.|++++|.+++++. .. .|+..|..+.......+++++|...++++...+.. +...+..++.. ...+
T Consensus 14 ~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 14 LARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-cccc
Confidence 345555666666666666332 11 24444555555555666666666666666654322 33344444444 4666
Q ss_pred chHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHhhhhhcC-----CCCHHHHHHHHHHHHhcCChHHHHHHH
Q 007517 242 SLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFA-----SKDIVMWNSIISGYAQYGLGEKSLKVF 316 (600)
Q Consensus 242 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~~~ 316 (600)
++++|.++.....+.. +++..+..++..|.+.++++++..+++.+. ..+...|..+...+.+.|+.++|++.|
T Consensus 92 ~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~ 169 (280)
T PF13429_consen 92 DPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDY 169 (280)
T ss_dssp ----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred cccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 6666666665544432 445556667777777777777777776643 246677888888888888888888888
Q ss_pred HHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC
Q 007517 317 HEMFSSGVMPD-DVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM-PFEP 394 (600)
Q Consensus 317 ~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p 394 (600)
++..+. .|+ ......++..+...|+.+++.+++....+.. +.++..+..+..+|...|+.++|...+++. ...|
T Consensus 170 ~~al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~--~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p 245 (280)
T PF13429_consen 170 RKALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA--PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNP 245 (280)
T ss_dssp HHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH---HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHST
T ss_pred HHHHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC--cCHHHHHHHHHHHhccccccccccccccccccccc
Confidence 888874 565 5567778888888888888888888877642 556677888888888888999998888887 3234
Q ss_pred -CHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 007517 395 -DAIIWGSLLGACRTHMKLDLAEVAAKKLLQ 424 (600)
Q Consensus 395 -~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 424 (600)
|+.+...+..++...|+.++|..+.+++.+
T Consensus 246 ~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 246 DDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp T-HHHHHHHHHHHT-----------------
T ss_pred ccccccccccccccccccccccccccccccc
Confidence 677777888888888888888888877654
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.1e-08 Score=102.00 Aligned_cols=360 Identities=13% Similarity=0.123 Sum_probs=284.8
Q ss_pred chHHHHHHHHHhcCChHHHHHHHhhCCC---CCcccHHHHHHHHHhCCChHHHHHHHhhcCC--CCc-chHHHHHHHHhc
Q 007517 69 VAQTNMVLGYCQDGRVDEGREIFDEMPK---KNVISWTTMISGYVNNNRIDVARKLFEVMPE--KNE-VSWTAMLMGYTQ 142 (600)
Q Consensus 69 ~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--p~~-~t~~~ll~~~~~ 142 (600)
.+|+.-...|.+.+.++-|+.+|....+ .+...|...+..=-..|..++-..+|++... |.. ..|....+..-.
T Consensus 517 ~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~ 596 (913)
T KOG0495|consen 517 STWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWK 596 (913)
T ss_pred hHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHh
Confidence 4566666667777888888888877665 3556787777666677999999999999887 544 455666677778
Q ss_pred CCChHHHHHHHhhCC---CCCccchhHHHHHHHhcCCHHHHHHHHHhccc--CChhhHHHHHHHHHHcCChHHHHHHHHH
Q 007517 143 CGRIQDAWELFKAMP---MKSVVASNSMILGLGQNGEVQKARVVFDQMRE--KDDATWSGMIKVYERKGYELEVIDLFTL 217 (600)
Q Consensus 143 ~g~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~ 217 (600)
.|+...|+.++.++. +.+...|-+-+..-..+.+++.|+.+|.+... +....|.--+..---.+..++|++++++
T Consensus 597 agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe 676 (913)
T KOG0495|consen 597 AGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEE 676 (913)
T ss_pred cCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHH
Confidence 899999999999887 55667888999999999999999999998864 4677787777777788999999999988
Q ss_pred HHHcCCccCch-hHhhHHHHHhhhcchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHhhhhhcCC---CCH
Q 007517 218 MQKEGVRVNFP-SLISVLSVCASLASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFAS---KDI 293 (600)
Q Consensus 218 m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~ 293 (600)
..+. -|+-. .|..+-..+-+.++.+.|+..|..-.+. ++..+..|-.|...--+.|++-.|+.+|++..- +|.
T Consensus 677 ~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~ 753 (913)
T KOG0495|consen 677 ALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNA 753 (913)
T ss_pred HHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcc
Confidence 8774 45544 4555666777888888888877655543 466778899999999999999999999998754 477
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHH
Q 007517 294 VMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDL 373 (600)
Q Consensus 294 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 373 (600)
..|-..|..=.+.|+.++|..+..+..+. .+-+...|..-|....+.++-......+.+ ...|+.+.-.+..+
T Consensus 754 ~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rkTks~DALkk------ce~dphVllaia~l 826 (913)
T KOG0495|consen 754 LLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKTKSIDALKK------CEHDPHVLLAIAKL 826 (913)
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCcccchHHHHHHHh------ccCCchhHHHHHHH
Confidence 89999999999999999999999988875 344556677767666666664444433332 25677888888999
Q ss_pred HhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHH
Q 007517 374 LGRAGQVEDAMKLIEAM-PFEPD-AIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSN 438 (600)
Q Consensus 374 ~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 438 (600)
+....+++.|.+.|.+. ...|| ..+|.-+...+.+||.-+.-..++.+...-+|.....+..++.
T Consensus 827 fw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~hG~~W~avSK 893 (913)
T KOG0495|consen 827 FWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPTHGELWQAVSK 893 (913)
T ss_pred HHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCcHHHHHhh
Confidence 99999999999999988 55565 6689889999999999999999999999999988666655543
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.37 E-value=3.1e-09 Score=101.97 Aligned_cols=156 Identities=8% Similarity=0.098 Sum_probs=77.1
Q ss_pred hhHhhHHHHHhhhcchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHhhhhhcCC---CCHHHHHHHHHHHH
Q 007517 228 PSLISVLSVCASLASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFAS---KDIVMWNSIISGYA 304 (600)
Q Consensus 228 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~ 304 (600)
.|...+.+-++-.+.-++|...|++..+.+ +....+|+.+..-|....+...|.+.++...+ .|-..|-.|..+|.
T Consensus 331 ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYe 409 (559)
T KOG1155|consen 331 ETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYE 409 (559)
T ss_pred cceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHH
Confidence 344444444444455555555555555443 23344455555555555555555555554332 34455555555555
Q ss_pred hcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHH
Q 007517 305 QYGLGEKSLKVFHEMFSSGVMP-DDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDA 383 (600)
Q Consensus 305 ~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 383 (600)
-.+.+.-|+-.|++..+. +| |...+..|..+|.+.++.++|.+.|.....- | ..+...|..|.++|-+.++.++|
T Consensus 410 im~Mh~YaLyYfqkA~~~--kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~-~-dte~~~l~~LakLye~l~d~~eA 485 (559)
T KOG1155|consen 410 IMKMHFYALYYFQKALEL--KPNDSRLWVALGECYEKLNRLEEAIKCYKRAILL-G-DTEGSALVRLAKLYEELKDLNEA 485 (559)
T ss_pred HhcchHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhc-c-ccchHHHHHHHHHHHHHHhHHHH
Confidence 555555555555555442 33 2344555555555555555555555554432 1 22334455555555555555555
Q ss_pred HHHHH
Q 007517 384 MKLIE 388 (600)
Q Consensus 384 ~~~~~ 388 (600)
...|+
T Consensus 486 a~~ye 490 (559)
T KOG1155|consen 486 AQYYE 490 (559)
T ss_pred HHHHH
Confidence 55444
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.36 E-value=3.4e-09 Score=104.21 Aligned_cols=262 Identities=12% Similarity=0.038 Sum_probs=205.7
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCchhHhhHHHHHhhhcchHHHHHHHHHHHHcCCCCchhhHHHHHH
Q 007517 191 DDATWSGMIKVYERKGYELEVIDLFTLMQKEGVRVNFPSLISVLSVCASLASLDHGRQVHAQLVRCQFDVDVYVASVLIT 270 (600)
Q Consensus 191 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 270 (600)
++.....-..-+...+++.+.++++....+.. ++....+..=|..+...|+...-..+-..+++.- |..+.+|-++.-
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~ 320 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGC 320 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHH
Confidence 33444445556778899999999999988753 4555555555666677777666655555666653 667788889988
Q ss_pred HHHHcCCHHHHHhhhhhcCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHH
Q 007517 271 MYIKCGELVKGKLIFDNFASK---DIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEG 347 (600)
Q Consensus 271 ~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 347 (600)
.|.-.|+..+|++.|.+...- =...|-.....|+-.|..++|+..+...-+. ++-...-+.-+-.-|.+.++.+.|
T Consensus 321 YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLA 399 (611)
T KOG1173|consen 321 YYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLA 399 (611)
T ss_pred HHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHH
Confidence 888899999999999876653 3478999999999999999999999887653 222222233344467888999999
Q ss_pred HHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC--------CCCC-CHHHHHHHHHHHHHcCCHHHHHHH
Q 007517 348 REIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM--------PFEP-DAIIWGSLLGACRTHMKLDLAEVA 418 (600)
Q Consensus 348 ~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--------~~~p-~~~~~~~ll~~~~~~g~~~~a~~~ 418 (600)
.++|.+.... .+.|+.+++-+.-+....+.+.+|...|+.. +-.+ -..+|+.|..+|++.+.+++|+..
T Consensus 400 e~Ff~~A~ai--~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~ 477 (611)
T KOG1173|consen 400 EKFFKQALAI--APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDY 477 (611)
T ss_pred HHHHHHHHhc--CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHH
Confidence 9999988753 2446778888888888889999999998865 1112 356788999999999999999999
Q ss_pred HHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHHH
Q 007517 419 AKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMR 457 (600)
Q Consensus 419 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 457 (600)
+++++.+.|.++.+|..++-+|...|+++.|...|.+..
T Consensus 478 ~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL 516 (611)
T KOG1173|consen 478 YQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKAL 516 (611)
T ss_pred HHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 999999999999999999999999999999999998765
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.6e-10 Score=108.69 Aligned_cols=198 Identities=16% Similarity=0.105 Sum_probs=164.4
Q ss_pred CchhhHHHHHHHHHHcCCHHHHHhhhhhcCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 007517 260 VDVYVASVLITMYIKCGELVKGKLIFDNFAS---KDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLS 336 (600)
Q Consensus 260 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 336 (600)
.....+..+...|...|++++|...|++... .+...+..+...|...|++++|.+.+++..+.. +.+...+..+..
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~ 107 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGT 107 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence 3356677788899999999999999987653 356788888999999999999999999998753 334556777788
Q ss_pred HHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHH
Q 007517 337 ACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM-PFEP-DAIIWGSLLGACRTHMKLDL 414 (600)
Q Consensus 337 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~ 414 (600)
.+...|++++|.+.++........+.....+..+...|.+.|++++|.+.+++. ...| +...+..+...+...|++++
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHH
Confidence 889999999999999998764222334567788899999999999999999887 3334 46678888899999999999
Q ss_pred HHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007517 415 AEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMRK 458 (600)
Q Consensus 415 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 458 (600)
|...++++.+..|.++..+..++.++...|+.++|..+.+.+.+
T Consensus 188 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 188 ARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 99999999998888888888899999999999999999888764
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.4e-09 Score=99.61 Aligned_cols=278 Identities=12% Similarity=0.136 Sum_probs=164.3
Q ss_pred CCChHHHHHHHhhcCCCCcch---HHHHHHHHhcCCChHHHHHHHhhCC-CCCcc------chhHHHHHHHhcCCHHHHH
Q 007517 112 NNRIDVARKLFEVMPEKNEVS---WTAMLMGYTQCGRIQDAWELFKAMP-MKSVV------ASNSMILGLGQNGEVQKAR 181 (600)
Q Consensus 112 ~g~~~~A~~~~~~m~~p~~~t---~~~ll~~~~~~g~~~~a~~~~~~~~-~~~~~------~~~~li~~~~~~g~~~~A~ 181 (600)
++++++|.++|-+|.+.|+.| -.+|.+.+.+.|..+.|..+|+.+. .||.. +...|..=|...|-+|.|+
T Consensus 48 s~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE 127 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAE 127 (389)
T ss_pred hcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 578899999999998844444 4567888999999999999999888 44433 2334666788999999999
Q ss_pred HHHHhcccCC---hhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCchh----HhhHHHHHhhhcchHHHHHHHHHHH
Q 007517 182 VVFDQMREKD---DATWSGMIKVYERKGYELEVIDLFTLMQKEGVRVNFPS----LISVLSVCASLASLDHGRQVHAQLV 254 (600)
Q Consensus 182 ~~f~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t----~~~ll~~~~~~~~~~~a~~~~~~~~ 254 (600)
.+|..+.+.+ ......|+..|-+..++++|++.-+++.+.|-.+..+- |.-+........+.+.|+..+....
T Consensus 128 ~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAl 207 (389)
T COG2956 128 DIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKAL 207 (389)
T ss_pred HHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 9999988743 34566788899999999999999988887665443322 2222222233344455555554444
Q ss_pred HcCCCCchhhHHHHHHHHHHcCCHHHHHhhhhhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 007517 255 RCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFASKDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGV 334 (600)
Q Consensus 255 ~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 334 (600)
+.. +..+...-.+ ...+...|+++.|++.++...+.+..--..+...|
T Consensus 208 qa~-~~cvRAsi~l-------------------------------G~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L 255 (389)
T COG2956 208 QAD-KKCVRASIIL-------------------------------GRVELAKGDYQKAVEALERVLEQNPEYLSEVLEML 255 (389)
T ss_pred hhC-ccceehhhhh-------------------------------hHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHH
Confidence 433 1122222223 34455555666666666655554322223344455
Q ss_pred HHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHH-HhCCCCCCHHHHHHHHHHHHHc---C
Q 007517 335 LSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLI-EAMPFEPDAIIWGSLLGACRTH---M 410 (600)
Q Consensus 335 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~-~~m~~~p~~~~~~~ll~~~~~~---g 410 (600)
..+|.+.|+.+++..++..+.+. .+....-..+.+.-....-.+.|...+ +.+.-+|+...+..|+...... |
T Consensus 256 ~~~Y~~lg~~~~~~~fL~~~~~~---~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~daeeg 332 (389)
T COG2956 256 YECYAQLGKPAEGLNFLRRAMET---NTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLADAEEG 332 (389)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHc---cCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhcccccc
Confidence 55666666666666666555543 233344444444444344444444433 3334466666666666654433 2
Q ss_pred CHHHHHHHHHHHhc
Q 007517 411 KLDLAEVAAKKLLQ 424 (600)
Q Consensus 411 ~~~~a~~~~~~~~~ 424 (600)
...+-+..++.++.
T Consensus 333 ~~k~sL~~lr~mvg 346 (389)
T COG2956 333 RAKESLDLLRDMVG 346 (389)
T ss_pred chhhhHHHHHHHHH
Confidence 23333444444443
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.33 E-value=4.2e-09 Score=101.69 Aligned_cols=394 Identities=11% Similarity=-0.033 Sum_probs=251.2
Q ss_pred HHHHHHHHHhCCChHHHHHHHhhCC--CCC-cchHHHHHHHHHcCCCHHHHHHHHccCCCCCcchH---HHHHHHHHhcC
Q 007517 9 WTAMVRGYVEEGMITEAGTLFWQMP--EKN-VVSWTVMLGGFIRDSRIDDARRLFDMMPEKDVVAQ---TNMVLGYCQDG 82 (600)
Q Consensus 9 ~~~ll~~~~~~g~~~~A~~~~~~m~--~~~-~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~---~~li~~~~~~g 82 (600)
+-+...-|.++|.+++|++.|...+ .|| +..|.....+|...|+|++..+.-....+-++.-- ..-.+++-+.|
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~lg 197 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHEQLG 197 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhc
Confidence 3344556778888899999888877 466 77788888888888888888887776665544333 33334556667
Q ss_pred ChHHHHHHHhhCCCCCcccHHHHHHHHHhCCChHH------------HHHHHhhcCC---CCcchHHHHHHHHhcCCChH
Q 007517 83 RVDEGREIFDEMPKKNVISWTTMISGYVNNNRIDV------------ARKLFEVMPE---KNEVSWTAMLMGYTQCGRIQ 147 (600)
Q Consensus 83 ~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~------------A~~~~~~m~~---p~~~t~~~ll~~~~~~g~~~ 147 (600)
++++|..= +|-.++..++....-..- +.+.+..-+. |......+....+...-
T Consensus 198 ~~~eal~D---------~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~--- 265 (606)
T KOG0547|consen 198 KFDEALFD---------VTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADP--- 265 (606)
T ss_pred cHHHHHHh---------hhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccc---
Confidence 77766531 222333333332222222 2222221111 33333333333221100
Q ss_pred HHHHHHhhCCCCCccchhHHHH----HHHhc-CCHHHHHHHHHhcc-------cCC---------hhhHHHHHHHHHHcC
Q 007517 148 DAWELFKAMPMKSVVASNSMIL----GLGQN-GEVQKARVVFDQMR-------EKD---------DATWSGMIKVYERKG 206 (600)
Q Consensus 148 ~a~~~~~~~~~~~~~~~~~li~----~~~~~-g~~~~A~~~f~~~~-------~~~---------~~~~~~li~~~~~~g 206 (600)
...+..+.......+.. .|... ..+..|...+.+-. ..+ ..+.+.-..-+.-.|
T Consensus 266 -----~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g 340 (606)
T KOG0547|consen 266 -----KPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKG 340 (606)
T ss_pred -----cccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcC
Confidence 00000111111122222 22211 12333333332211 111 112222222345578
Q ss_pred ChHHHHHHHHHHHHcCCccCchhHhhHHHHHhhhcchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHhhhh
Q 007517 207 YELEVIDLFTLMQKEGVRVNFPSLISVLSVCASLASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFD 286 (600)
Q Consensus 207 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~ 286 (600)
++..|...|+........++. .|.-+..++....+.++....|....+.+ +.++.+|.--.+++.-.+++++|..=|+
T Consensus 341 ~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF~ 418 (606)
T KOG0547|consen 341 DSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADFQ 418 (606)
T ss_pred CchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHHH
Confidence 889999999998876433332 27778888999999999999999999876 5677788888899999999999999999
Q ss_pred hcCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCC
Q 007517 287 NFAS---KDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPK 363 (600)
Q Consensus 287 ~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~ 363 (600)
+... .++..|-.+..+..+.+++++++..|++.++. ++--...|+.....+...++++.|.+.|+...+- .|+
T Consensus 419 Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L---E~~ 494 (606)
T KOG0547|consen 419 KAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL---EPR 494 (606)
T ss_pred HHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh---ccc
Confidence 8776 35566777777777888999999999999876 4444567888888999999999999999988752 333
Q ss_pred ---------hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Q 007517 364 ---------TEHYACMVDLLGRAGQVEDAMKLIEAM-PFEP-DAIIWGSLLGACRTHMKLDLAEVAAKKLLQLE 426 (600)
Q Consensus 364 ---------~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 426 (600)
+.+--+++-.-. .+++..|.+++.+. .+.| ....+.+|...-.+.|+.++|+++|++...+.
T Consensus 495 ~~~~~v~~~plV~Ka~l~~qw-k~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lA 567 (606)
T KOG0547|consen 495 EHLIIVNAAPLVHKALLVLQW-KEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLA 567 (606)
T ss_pred cccccccchhhhhhhHhhhch-hhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 222222332223 38999999999988 5555 46679999999999999999999999987754
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.32 E-value=7.3e-11 Score=121.09 Aligned_cols=263 Identities=14% Similarity=0.118 Sum_probs=195.9
Q ss_pred HHHHHHHHcCCccCchhHhhHHHHHhhhcchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHhhhhhcCCCC
Q 007517 213 DLFTLMQKEGVRVNFPSLISVLSVCASLASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFASKD 292 (600)
Q Consensus 213 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~ 292 (600)
.++-.++..|+.|+.+||.+++..|+..|+.+.|- +|..|.-..++.+..+++.++......++.+.+. +|.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~ 82 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPL 82 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCc
Confidence 46778889999999999999999999999999999 9999999989999999999999999999887765 678
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHH
Q 007517 293 IVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVD 372 (600)
Q Consensus 293 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 372 (600)
..+|+.|..+|.++|+... ++..++ -...+...++..|....-..++..+.-..+.-||.. ..+.
T Consensus 83 aDtyt~Ll~ayr~hGDli~-fe~veq-----------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~---n~il 147 (1088)
T KOG4318|consen 83 ADTYTNLLKAYRIHGDLIL-FEVVEQ-----------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAE---NAIL 147 (1088)
T ss_pred hhHHHHHHHHHHhccchHH-HHHHHH-----------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHH---HHHH
Confidence 8899999999999999765 333333 233455566777777777777665443334445543 3566
Q ss_pred HHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHH
Q 007517 373 LLGRAGQVEDAMKLIEAMPFEPDAIIWGSLLGACRTH-MKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAE 451 (600)
Q Consensus 373 ~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~-g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 451 (600)
.+.-.|-++.+.+++..+|...-.......+.-+... ..+++-....+...+ .|+ +.+|..+...-..+|+.+.|..
T Consensus 148 llv~eglwaqllkll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e-~~~-s~~l~a~l~~alaag~~d~Ak~ 225 (1088)
T KOG4318|consen 148 LLVLEGLWAQLLKLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVE-APT-SETLHAVLKRALAAGDVDGAKN 225 (1088)
T ss_pred HHHHHHHHHHHHHHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhc-CCC-hHHHHHHHHHHHhcCchhhHHH
Confidence 6677888999999999886432111111134444433 334444444444445 554 4899999999999999999999
Q ss_pred HHHHHHhCCCccCCceeEEEeCCEEEEEEcCCCCCCCChHHHHHHHHHHHHHHHHcCcccCCCcc
Q 007517 452 LRKNMRKRNVIKPPGCSWIEVEKKVHMFTGRDCVSHPEHPMIMRMLEKIGGLLREAGYCPDSSFV 516 (600)
Q Consensus 452 ~~~~m~~~g~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~~~~~~l~~l~~~~~~~g~~p~~~~~ 516 (600)
++..|+++|++..+.+.|-.+.+ .++. .-++.+.+-|++.|+.|+..+.
T Consensus 226 ll~emke~gfpir~HyFwpLl~g------~~~~----------q~~e~vlrgmqe~gv~p~seT~ 274 (1088)
T KOG4318|consen 226 LLYEMKEKGFPIRAHYFWPLLLG------INAA----------QVFEFVLRGMQEKGVQPGSETQ 274 (1088)
T ss_pred HHHHHHHcCCCcccccchhhhhc------Cccc----------hHHHHHHHHHHHhcCCCCcchh
Confidence 99999999999988888865533 1211 1366788999999999988764
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.30 E-value=7.3e-12 Score=85.36 Aligned_cols=50 Identities=36% Similarity=0.582 Sum_probs=47.8
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 007517 291 KDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSY 340 (600)
Q Consensus 291 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 340 (600)
||+++||++|.+|++.|++++|+++|++|.+.|++||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 68999999999999999999999999999999999999999999999874
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.4e-08 Score=94.55 Aligned_cols=286 Identities=13% Similarity=0.077 Sum_probs=185.3
Q ss_pred HHHHHHh--CCChHHHHHHHhhcCC-CCc--chHHHHHHHHhcCCChHHHHHHHhhCCC----CCccchhHHHHHHHhcC
Q 007517 105 MISGYVN--NNRIDVARKLFEVMPE-KNE--VSWTAMLMGYTQCGRIQDAWELFKAMPM----KSVVASNSMILGLGQNG 175 (600)
Q Consensus 105 li~~~~~--~g~~~~A~~~~~~m~~-p~~--~t~~~ll~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~li~~~~~~g 175 (600)
+..+..+ .|++..|.++..+-.+ .+. ..|..-..+.-..|+.+.+-..+.++.+ ++..+.-+........|
T Consensus 88 ~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~ 167 (400)
T COG3071 88 LNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRR 167 (400)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCC
Confidence 4444433 5788888888777655 222 2344445566677888888877777762 22334455566677777
Q ss_pred CHHHHHHHHHhcc---cCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCchhHhhHHHHHhhhcchHHHHHHHHH
Q 007517 176 EVQKARVVFDQMR---EKDDATWSGMIKVYERKGYELEVIDLFTLMQKEGVRVNFPSLISVLSVCASLASLDHGRQVHAQ 252 (600)
Q Consensus 176 ~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 252 (600)
+...|..-.+++. .+++........+|.+.|++.+.+.++.+|.+.|+--|+.. .++
T Consensus 168 d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~-----------------~~l--- 227 (400)
T COG3071 168 DYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEA-----------------ARL--- 227 (400)
T ss_pred CchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHH-----------------HHH---
Confidence 7777776666554 34667777777788888888888888888777765433211 000
Q ss_pred HHHcCCCCchhhHHHHHHHHHHcCCHHHHHhhhhhcCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH
Q 007517 253 LVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFAS---KDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDV 329 (600)
Q Consensus 253 ~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 329 (600)
...+++.+++-....+..+.-...++..+. .++..--+++.-+.+.|+.++|.++.++..+.+..|+-.
T Consensus 228 --------e~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~ 299 (400)
T COG3071 228 --------EQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLC 299 (400)
T ss_pred --------HHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHH
Confidence 011223333322222333333334444443 245555666777778888888888888888877777622
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHH
Q 007517 330 TLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM-PFEPDAIIWGSLLGACRT 408 (600)
Q Consensus 330 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~ 408 (600)
.+-.+.+.++.+.-.+..+...+.++ .++..+.+|...|.+.+.+.+|.+.|+.. +..|+..+|+-+..++.+
T Consensus 300 ----~~~~~l~~~d~~~l~k~~e~~l~~h~--~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~ 373 (400)
T COG3071 300 ----RLIPRLRPGDPEPLIKAAEKWLKQHP--EDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQ 373 (400)
T ss_pred ----HHHhhcCCCCchHHHHHHHHHHHhCC--CChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHH
Confidence 22356677777777777777766544 34477788888888888888888888866 677888888888888888
Q ss_pred cCCHHHHHHHHHHHhc
Q 007517 409 HMKLDLAEVAAKKLLQ 424 (600)
Q Consensus 409 ~g~~~~a~~~~~~~~~ 424 (600)
.|+.+.|..+.++.+.
T Consensus 374 ~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 374 LGEPEEAEQVRREALL 389 (400)
T ss_pred cCChHHHHHHHHHHHH
Confidence 8888888888887664
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.3e-07 Score=89.71 Aligned_cols=294 Identities=12% Similarity=0.041 Sum_probs=209.1
Q ss_pred cchHHHHHHHHhc--CCChHHHHHHHhhCC-----CCCccchhHHHHHHHhcCCHHHHHHHHHhcccCChhhHHHH---H
Q 007517 130 EVSWTAMLMGYTQ--CGRIQDAWELFKAMP-----MKSVVASNSMILGLGQNGEVQKARVVFDQMREKDDATWSGM---I 199 (600)
Q Consensus 130 ~~t~~~ll~~~~~--~g~~~~a~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~l---i 199 (600)
..+...-+.+++. .++-..+.+.+..+. +.|+....++...|...|+.++|...|++...-|+.+...| .
T Consensus 194 ~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya 273 (564)
T KOG1174|consen 194 FDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYA 273 (564)
T ss_pred ccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHH
Confidence 3344444444433 344444444433332 67788888999999999999999999998876555443332 3
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCccCchhHhhHHHHHhhhcchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHH
Q 007517 200 KVYERKGYELEVIDLFTLMQKEGVRVNFPSLISVLSVCASLASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELV 279 (600)
Q Consensus 200 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~ 279 (600)
-.+.+.|+.+..-.+...+.... +-+...|..-+...-...+++.|..+-+..++.. +.+...+-.-...+...|+.+
T Consensus 274 ~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~ 351 (564)
T KOG1174|consen 274 VLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHT 351 (564)
T ss_pred HHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchH
Confidence 34567888888888777776532 1222223333334445677888887777777654 334444444456677889999
Q ss_pred HHHhhhhhcCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHh-ccCCHHHHHHHHHHh
Q 007517 280 KGKLIFDNFAS---KDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVL-SACS-YTGKVKEGREIFESM 354 (600)
Q Consensus 280 ~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll-~a~~-~~g~~~~a~~~~~~~ 354 (600)
+|.-.|+.... -+..+|.-|+..|...|++.+|.-+-+...+. +.-+..++..+- ..|. ....-++|.+++++.
T Consensus 352 ~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~ 430 (564)
T KOG1174|consen 352 QAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKS 430 (564)
T ss_pred HHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhh
Confidence 99999986543 47899999999999999999999888776553 334445554431 2332 223457888888876
Q ss_pred HhcCCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC
Q 007517 355 KSKYLVEPK-TEHYACMVDLLGRAGQVEDAMKLIEAM-PFEPDAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKN 429 (600)
Q Consensus 355 ~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 429 (600)
.+ +.|+ ....+.+...+.+.|+.+++..++++. ...||....+.|...+...+.+.+|...|..++.++|++
T Consensus 431 L~---~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~ 504 (564)
T KOG1174|consen 431 LK---INPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKS 504 (564)
T ss_pred hc---cCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccc
Confidence 64 4566 567788889999999999999999987 667999999999999999999999999999999999998
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.24 E-value=6.5e-08 Score=95.85 Aligned_cols=432 Identities=12% Similarity=0.109 Sum_probs=265.6
Q ss_pred HHHHHHhCCChHHHHHHHhhCC---CCCcchHHHHHHHHHcCCCHHHHHHHHccCCCCCcchHHH--HHHHH--HhcCCh
Q 007517 12 MVRGYVEEGMITEAGTLFWQMP---EKNVVSWTVMLGGFIRDSRIDDARRLFDMMPEKDVVAQTN--MVLGY--CQDGRV 84 (600)
Q Consensus 12 ll~~~~~~g~~~~A~~~~~~m~---~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~--li~~~--~~~g~~ 84 (600)
=+..+.++|++++|.+.-..++ +.|...+..-+-+..+.+.+++|..+.+.-... .+++. +=.+| -+.+..
T Consensus 18 ~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Yrlnk~ 95 (652)
T KOG2376|consen 18 DLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEYRLNKL 95 (652)
T ss_pred HHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHHHcccH
Confidence 3456677889999999888877 345566666677788999999999776654321 12222 23444 477999
Q ss_pred HHHHHHHhhCCCCCcccHHHHHHHHHhCCChHHHHHHHhhcCCCCcchHHHHHHH-HhcCCChHHHHHHHhhCCCCCccc
Q 007517 85 DEGREIFDEMPKKNVISWTTMISGYVNNNRIDVARKLFEVMPEKNEVSWTAMLMG-YTQCGRIQDAWELFKAMPMKSVVA 163 (600)
Q Consensus 85 ~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~p~~~t~~~ll~~-~~~~g~~~~a~~~~~~~~~~~~~~ 163 (600)
++|...++...+.+..+...-...+.+.|++++|+++|+.+.+-+...+..-+.+ |...+....+. +.+........+
T Consensus 96 Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~-~~q~v~~v~e~s 174 (652)
T KOG2376|consen 96 DEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQ-LLQSVPEVPEDS 174 (652)
T ss_pred HHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHH-HHHhccCCCcch
Confidence 9999999966555555666667778899999999999999977333323222221 11111111121 333333222334
Q ss_pred hhHHH---HHHHhcCCHHHHHHHHHhcc--------cCC-----hh-----hHHHHHHHHHHcCChHHHHHHHHHHHHcC
Q 007517 164 SNSMI---LGLGQNGEVQKARVVFDQMR--------EKD-----DA-----TWSGMIKVYERKGYELEVIDLFTLMQKEG 222 (600)
Q Consensus 164 ~~~li---~~~~~~g~~~~A~~~f~~~~--------~~~-----~~-----~~~~li~~~~~~g~~~~A~~~~~~m~~~g 222 (600)
|..+- -.+...|++.+|+++++... +.| .. .---|.-.+...|+..+|..+|....+..
T Consensus 175 yel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~ 254 (652)
T KOG2376|consen 175 YELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRN 254 (652)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc
Confidence 44433 35678899999999998872 111 11 12234456778999999999999998874
Q ss_pred CccCchhHhhHH---HHHhhhcchHH--HHHHHHH-----------HHHcCCCCchhhHHHHHHHHHHcCCHHHHHhhhh
Q 007517 223 VRVNFPSLISVL---SVCASLASLDH--GRQVHAQ-----------LVRCQFDVDVYVASVLITMYIKCGELVKGKLIFD 286 (600)
Q Consensus 223 ~~p~~~t~~~ll---~~~~~~~~~~~--a~~~~~~-----------~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~ 286 (600)
.+|........ .+...-.++-. ....++. .....-......-+.++.+|. +..+.+.++-.
T Consensus 255 -~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~t--nk~~q~r~~~a 331 (652)
T KOG2376|consen 255 -PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFT--NKMDQVRELSA 331 (652)
T ss_pred -CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhHHHHHHHHH
Confidence 44543222211 12211111111 0111110 000000112222334555554 45566677766
Q ss_pred hcCCCC-HHHHHHHHHHHH--hcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhccCCHHHHHHHHH--------H
Q 007517 287 NFASKD-IVMWNSIISGYA--QYGLGEKSLKVFHEMFSSGVMPDD--VTLVGVLSACSYTGKVKEGREIFE--------S 353 (600)
Q Consensus 287 ~~~~~~-~~~~~~li~~~~--~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~--------~ 353 (600)
..+... ...+.+++.... +...+.+|.+++....+. .|.. ......+......|+++.|.+++. .
T Consensus 332 ~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss 409 (652)
T KOG2376|consen 332 SLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADG--HPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSS 409 (652)
T ss_pred hCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhh
Confidence 666532 344555544432 223577888888877654 4444 334445556678899999999998 4
Q ss_pred hHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC--------CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 007517 354 MKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM--------PFEPD-AIIWGSLLGACRTHMKLDLAEVAAKKLLQ 424 (600)
Q Consensus 354 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--------~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 424 (600)
+.+ +.-.+.+...++.+|.+.++.+.|..++.+. .-++. ..+|.-+...-.++|+.++|...++++.+
T Consensus 410 ~~~---~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k 486 (652)
T KOG2376|consen 410 ILE---AKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVK 486 (652)
T ss_pred hhh---hccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHH
Confidence 433 2345667788999999999888888877765 11222 23344455556678999999999999999
Q ss_pred cCCCCCchHHHHHHHHHhcCCchHHHHHHHH
Q 007517 425 LEPKNAGPYILLSNIYASQGRFHDVAELRKN 455 (600)
Q Consensus 425 ~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 455 (600)
.+|++......++.+|+.. +.+.|..+-+.
T Consensus 487 ~n~~d~~~l~~lV~a~~~~-d~eka~~l~k~ 516 (652)
T KOG2376|consen 487 FNPNDTDLLVQLVTAYARL-DPEKAESLSKK 516 (652)
T ss_pred hCCchHHHHHHHHHHHHhc-CHHHHHHHhhc
Confidence 9999999999999999876 45666665443
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.3e-11 Score=82.89 Aligned_cols=50 Identities=22% Similarity=0.308 Sum_probs=47.5
Q ss_pred CChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCchhHhhHHHHHhh
Q 007517 190 KDDATWSGMIKVYERKGYELEVIDLFTLMQKEGVRVNFPSLISVLSVCAS 239 (600)
Q Consensus 190 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 239 (600)
||+++||++|.+|++.|++++|+++|++|.+.|++||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 68999999999999999999999999999999999999999999999874
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.7e-08 Score=95.63 Aligned_cols=275 Identities=15% Similarity=0.157 Sum_probs=192.7
Q ss_pred cCCHHHHHHHHHhcccC---ChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCchhHhhHHHHHhhhcchHHHHHHH
Q 007517 174 NGEVQKARVVFDQMREK---DDATWSGMIKVYERKGYELEVIDLFTLMQKEGVRVNFPSLISVLSVCASLASLDHGRQVH 250 (600)
Q Consensus 174 ~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 250 (600)
.|++..|+++..+-.+. .+..|..-+.+--+.|+.+.+-.++.+..+.--.++.....+........|+.+.|..-.
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 57788888777765432 333455555666677888888888877766422334444455555667778888888877
Q ss_pred HHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHhhhhhcCCC-----------CHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 007517 251 AQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFASK-----------DIVMWNSIISGYAQYGLGEKSLKVFHEM 319 (600)
Q Consensus 251 ~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~-----------~~~~~~~li~~~~~~g~~~~A~~~~~~m 319 (600)
..+.+.+ +.++.+.......|.+.|++.....+...+.+. ...+|+.++.-....+..+.-...|++.
T Consensus 177 ~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~ 255 (400)
T COG3071 177 DQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ 255 (400)
T ss_pred HHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence 7777766 556777788888888888888888888877653 1246777777666666666655566665
Q ss_pred HHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHH----hCCCCCC
Q 007517 320 FSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIE----AMPFEPD 395 (600)
Q Consensus 320 ~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~----~m~~~p~ 395 (600)
-.. .+-+...-.+++.-+...|+.++|.++..+..++ +..|+ ...++ ...+-++.+.=.+..+ ..|. +
T Consensus 256 pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~-~~D~~---L~~~~-~~l~~~d~~~l~k~~e~~l~~h~~--~ 327 (400)
T COG3071 256 PRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKR-QWDPR---LCRLI-PRLRPGDPEPLIKAAEKWLKQHPE--D 327 (400)
T ss_pred cHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHh-ccChh---HHHHH-hhcCCCCchHHHHHHHHHHHhCCC--C
Confidence 433 4455555666777788889999999988887765 34444 11111 1234444444333333 3343 4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007517 396 AIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMRK 458 (600)
Q Consensus 396 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 458 (600)
+..+.+|...|.+++.+.+|...++.+++..|+. ..|..++.++.+.|+..+|.+++++...
T Consensus 328 p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~-~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 328 PLLLSTLGRLALKNKLWGKASEALEAALKLRPSA-SDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCCh-hhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 4788999999999999999999999999999976 8999999999999999999999887763
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=5.1e-09 Score=111.12 Aligned_cols=260 Identities=12% Similarity=0.055 Sum_probs=187.4
Q ss_pred ChhhHHHHHHHHHH-----cCChHHHHHHHHHHHHcCCccCch-hHhhHHHHHh---------hhcchHHHHHHHHHHHH
Q 007517 191 DDATWSGMIKVYER-----KGYELEVIDLFTLMQKEGVRVNFP-SLISVLSVCA---------SLASLDHGRQVHAQLVR 255 (600)
Q Consensus 191 ~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~---------~~~~~~~a~~~~~~~~~ 255 (600)
+...|...+.+-.. .+..++|+.+|++..+. .|+.. .+..+..++. ..++.++|...++.+++
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ 332 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATE 332 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHh
Confidence 45556666665322 23457899999988874 55543 3444433332 23457899999999998
Q ss_pred cCCCCchhhHHHHHHHHHHcCCHHHHHhhhhhcCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HH
Q 007517 256 CQFDVDVYVASVLITMYIKCGELVKGKLIFDNFAS---KDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDV-TL 331 (600)
Q Consensus 256 ~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~ 331 (600)
.. +.+...+..+..++...|++++|...|++..+ .+...|..+...+...|++++|+..+++..+. .|+.. .+
T Consensus 333 ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l--~P~~~~~~ 409 (553)
T PRK12370 333 LD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKL--DPTRAAAG 409 (553)
T ss_pred cC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCChhhH
Confidence 76 55777888888999999999999999998754 35678889999999999999999999999885 55543 23
Q ss_pred HHHHHHHhccCCHHHHHHHHHHhHhcCCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHH
Q 007517 332 VGVLSACSYTGKVKEGREIFESMKSKYLVEP-KTEHYACMVDLLGRAGQVEDAMKLIEAM-PFEPDAI-IWGSLLGACRT 408 (600)
Q Consensus 332 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~-~~~~ll~~~~~ 408 (600)
..++.++...|++++|...++++.+.. +| ++..+..+...|...|++++|.+.++++ +..|+.. .++.+...+..
T Consensus 410 ~~~~~~~~~~g~~eeA~~~~~~~l~~~--~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~ 487 (553)
T PRK12370 410 ITKLWITYYHTGIDDAIRLGDELRSQH--LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQ 487 (553)
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHHhc--cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhc
Confidence 334445666899999999999887642 34 4566788899999999999999999987 4455544 45555566677
Q ss_pred cCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 007517 409 HMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMRKRN 460 (600)
Q Consensus 409 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 460 (600)
.| +.|...++++++..-..+..+..+...|.-.|+-+.+..+ +++.+.+
T Consensus 488 ~g--~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 488 NS--ERALPTIREFLESEQRIDNNPGLLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred cH--HHHHHHHHHHHHHhhHhhcCchHHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 77 4788878877764322223333477788888888888777 7777654
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.7e-07 Score=93.70 Aligned_cols=195 Identities=13% Similarity=0.121 Sum_probs=107.0
Q ss_pred hHHHHHHHHHHcCCHHHHHhhhhhcCCCCHHHHHHH---HHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHh
Q 007517 264 VASVLITMYIKCGELVKGKLIFDNFASKDIVMWNSI---ISGYAQYGLGEKSLKVFHEMFSSGVMPDDV-TLVGVLSACS 339 (600)
Q Consensus 264 ~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~ 339 (600)
+|...++.--.+|-++....+|+++.+--+.|=..+ ..-+-.+.-++++.+.|++-+..=-.|+.. .|+..|.-+.
T Consensus 479 iWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi 558 (835)
T KOG2047|consen 479 IWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFI 558 (835)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHH
Confidence 444445555556666667777766654211111111 111223455677777776644432334543 3444333322
Q ss_pred ---ccCCHHHHHHHHHHhHhcCCCCCCh--HHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCC--HHHHHHHHHHHHHcC
Q 007517 340 ---YTGKVKEGREIFESMKSKYLVEPKT--EHYACMVDLLGRAGQVEDAMKLIEAM--PFEPD--AIIWGSLLGACRTHM 410 (600)
Q Consensus 340 ---~~g~~~~a~~~~~~~~~~~~~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~--~~~~~~ll~~~~~~g 410 (600)
....++.|+.+|++..+ |.+|.. ..|-.....=.+-|....|++++++. ++++. ...|+..|.--...=
T Consensus 559 ~rygg~klEraRdLFEqaL~--~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~y 636 (835)
T KOG2047|consen 559 KRYGGTKLERARDLFEQALD--GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIY 636 (835)
T ss_pred HHhcCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHh
Confidence 23467888888888876 444432 12323333334567778888888887 33332 345777665433332
Q ss_pred CHHHHHHHHHHHhccCCCCCc--hHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 007517 411 KLDLAEVAAKKLLQLEPKNAG--PYILLSNIYASQGRFHDVAELRKNMRKRN 460 (600)
Q Consensus 411 ~~~~a~~~~~~~~~~~p~~~~--~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 460 (600)
-+..-..+++++++.-|++-. .....+..=.+.|..+.|+.++..-.+--
T Consensus 637 Gv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~ 688 (835)
T KOG2047|consen 637 GVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQIC 688 (835)
T ss_pred CCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcC
Confidence 244556778888887666422 23345566677888888888887665543
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.2e-08 Score=93.57 Aligned_cols=285 Identities=14% Similarity=0.128 Sum_probs=176.8
Q ss_pred CChHHHHHHHhhCCCCCccc---hhHHHHHHHhcCCHHHHHHHHHhcccC-Ch------hhHHHHHHHHHHcCChHHHHH
Q 007517 144 GRIQDAWELFKAMPMKSVVA---SNSMILGLGQNGEVQKARVVFDQMREK-DD------ATWSGMIKVYERKGYELEVID 213 (600)
Q Consensus 144 g~~~~a~~~~~~~~~~~~~~---~~~li~~~~~~g~~~~A~~~f~~~~~~-~~------~~~~~li~~~~~~g~~~~A~~ 213 (600)
.+.++|..+|-.|...|+.+ .-+|.+.|-+.|.+|.|+++.+.+.++ |. ...-.|..-|...|-++.|..
T Consensus 49 ~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~ 128 (389)
T COG2956 49 NQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAED 128 (389)
T ss_pred cCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 45566666666666333333 335566666666666666666655432 21 122334445555566666666
Q ss_pred HHHHHHHcCCccCchhHhhHHHHHhhhcchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHhhhhhcCCCCH
Q 007517 214 LFTLMQKEGVRVNFPSLISVLSVCASLASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFASKDI 293 (600)
Q Consensus 214 ~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~ 293 (600)
+|..+.+.|. .-.....-|+..|-+..+|++|.++-+++..-+.
T Consensus 129 ~f~~L~de~e------------------------------------fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~ 172 (389)
T COG2956 129 IFNQLVDEGE------------------------------------FAEGALQQLLNIYQATREWEKAIDVAERLVKLGG 172 (389)
T ss_pred HHHHHhcchh------------------------------------hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCC
Confidence 6665554331 1122333445555555555555555443332111
Q ss_pred --------HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHhccCCHHHHHHHHHHhHhcCCCCCCh
Q 007517 294 --------VMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLV-GVLSACSYTGKVKEGREIFESMKSKYLVEPKT 364 (600)
Q Consensus 294 --------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~-~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~ 364 (600)
..|.-+...+....+.+.|..++.+..+. .|+.+--+ .+-......|+++.|.+.++.+.+. +..--.
T Consensus 173 q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa--~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ-n~~yl~ 249 (389)
T COG2956 173 QTYRVEIAQFYCELAQQALASSDVDRARELLKKALQA--DKKCVRASIILGRVELAKGDYQKAVEALERVLEQ-NPEYLS 249 (389)
T ss_pred ccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh--CccceehhhhhhHHHHhccchHHHHHHHHHHHHh-ChHHHH
Confidence 23444555666678899999999999875 45544333 3456778899999999999999875 223336
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHH--
Q 007517 365 EHYACMVDLLGRAGQVEDAMKLIEAM-PFEPDAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYA-- 441 (600)
Q Consensus 365 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~-- 441 (600)
.+...|..+|...|+.++...++.++ ...+....-..+-..-....-.+.|.....+-+...|.--..|..+-.-..
T Consensus 250 evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~da 329 (389)
T COG2956 250 EVLEMLYECYAQLGKPAEGLNFLRRAMETNTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLADA 329 (389)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhccc
Confidence 77888999999999999999999877 444555554555554445555677777777778888876333433333333
Q ss_pred hcCCchHHHHHHHHHHhCCCccCCce
Q 007517 442 SQGRFHDVAELRKNMRKRNVIKPPGC 467 (600)
Q Consensus 442 ~~g~~~~a~~~~~~m~~~g~~~~~~~ 467 (600)
..|++.+..-.++.|....++..|.+
T Consensus 330 eeg~~k~sL~~lr~mvge~l~~~~~Y 355 (389)
T COG2956 330 EEGRAKESLDLLRDMVGEQLRRKPRY 355 (389)
T ss_pred cccchhhhHHHHHHHHHHHHhhcCCc
Confidence 44678888889999987766666654
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.17 E-value=4.8e-09 Score=106.29 Aligned_cols=229 Identities=16% Similarity=0.221 Sum_probs=160.3
Q ss_pred hHhhHHHHHhhhcchHHHHHHHHHHHHc-----CC-CCch-hhHHHHHHHHHHcCCHHHHHhhhhhcCC-------C---
Q 007517 229 SLISVLSVCASLASLDHGRQVHAQLVRC-----QF-DVDV-YVASVLITMYIKCGELVKGKLIFDNFAS-------K--- 291 (600)
Q Consensus 229 t~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~~-~~~~~li~~y~~~g~~~~A~~~~~~~~~-------~--- 291 (600)
|+..+...|...|+++.|..++...++. |. .|.+ ...+.+...|...+++++|..+|+++.. +
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~ 280 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHP 280 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 4444555556666666666655555443 11 1121 2223466777888888888887776643 1
Q ss_pred -CHHHHHHHHHHHHhcCChHHHHHHHHHHHH-----CCCCC-CHH-HHHHHHHHHhccCCHHHHHHHHHHhHhcCC--CC
Q 007517 292 -DIVMWNSIISGYAQYGLGEKSLKVFHEMFS-----SGVMP-DDV-TLVGVLSACSYTGKVKEGREIFESMKSKYL--VE 361 (600)
Q Consensus 292 -~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p-~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~--~~ 361 (600)
-..+++.|..+|...|++++|..++++..+ .|..+ ... -++.+...|...+.+++|..+++...+.+. +.
T Consensus 281 ~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g 360 (508)
T KOG1840|consen 281 AVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPG 360 (508)
T ss_pred HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhcc
Confidence 135677788888888888888887776543 23222 222 356677788899999999999887665432 12
Q ss_pred CC----hHHHHHHHHHHhhcCCHHHHHHHHHhC---------CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhc---
Q 007517 362 PK----TEHYACMVDLLGRAGQVEDAMKLIEAM---------PFEPD-AIIWGSLLGACRTHMKLDLAEVAAKKLLQ--- 424 (600)
Q Consensus 362 p~----~~~~~~li~~~~~~g~~~~A~~~~~~m---------~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~--- 424 (600)
++ ..+|+.|...|...|++++|.+++++. +..+. ...++.|..+|.+.++++.|.++|.+...
T Consensus 361 ~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~ 440 (508)
T KOG1840|consen 361 EDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMK 440 (508)
T ss_pred ccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 22 568999999999999999999999877 11222 45678888999999999999999988665
Q ss_pred -cCCCC---CchHHHHHHHHHhcCCchHHHHHHHHHH
Q 007517 425 -LEPKN---AGPYILLSNIYASQGRFHDVAELRKNMR 457 (600)
Q Consensus 425 -~~p~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 457 (600)
..|+. ..+|..|+.+|...|++++|.++.+...
T Consensus 441 ~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 441 LCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 34554 4568889999999999999999988875
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.4e-08 Score=95.25 Aligned_cols=197 Identities=15% Similarity=0.078 Sum_probs=115.8
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCchhHhhHHHHHhhhcchHHHHHHHHHHHHcCCCCchhhHHHHHHH
Q 007517 192 DATWSGMIKVYERKGYELEVIDLFTLMQKEGVRVNFPSLISVLSVCASLASLDHGRQVHAQLVRCQFDVDVYVASVLITM 271 (600)
Q Consensus 192 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 271 (600)
...+..+...+...|++++|.+.+++..+.. | .+...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~--p----------------------------------~~~~~~~~la~~ 74 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD--P----------------------------------DDYLAYLALALY 74 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--c----------------------------------ccHHHHHHHHHH
Confidence 3445666666666777777776666665432 2 223334444445
Q ss_pred HHHcCCHHHHHhhhhhcCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHH
Q 007517 272 YIKCGELVKGKLIFDNFAS---KDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMP-DDVTLVGVLSACSYTGKVKEG 347 (600)
Q Consensus 272 y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a 347 (600)
|...|++++|.+.|++... .+...+..+...+...|++++|.+.|++.......| ....+..+..++...|++++|
T Consensus 75 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 154 (234)
T TIGR02521 75 YQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKA 154 (234)
T ss_pred HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHH
Confidence 5555555555555544332 234455556666666677777777776666532222 223444555566677777777
Q ss_pred HHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q 007517 348 REIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM-PF-EPDAIIWGSLLGACRTHMKLDLAEVAAKKLLQL 425 (600)
Q Consensus 348 ~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 425 (600)
.+.+.+..+.. +.+...+..+...+...|++++|.+.+++. .. +++...+..+...+...|+.+.|..+.+.+...
T Consensus 155 ~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 155 EKYLTRALQID--PQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHhC--cCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 77777766531 234556667777777777777777777765 22 234555556666677777777777777666554
Q ss_pred C
Q 007517 426 E 426 (600)
Q Consensus 426 ~ 426 (600)
.
T Consensus 233 ~ 233 (234)
T TIGR02521 233 F 233 (234)
T ss_pred C
Confidence 3
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.1e-07 Score=93.99 Aligned_cols=272 Identities=14% Similarity=0.089 Sum_probs=156.3
Q ss_pred CcccHHHHHHHHHhCCChHHHHHHHhhcCC---CCcchHHHHHHHHhcCCChHHHHHHHhhCC---CCCccchhHHHHHH
Q 007517 98 NVISWTTMISGYVNNNRIDVARKLFEVMPE---KNEVSWTAMLMGYTQCGRIQDAWELFKAMP---MKSVVASNSMILGL 171 (600)
Q Consensus 98 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~li~~~ 171 (600)
++.....-..-+...+++.+..++++...+ +....+..-|..+...|+..+-..+=..++ |..+.+|-++.-.|
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YY 322 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYY 322 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHH
Confidence 344444455566677888888888888777 444455555667777777665555544454 66778888888888
Q ss_pred HhcCCHHHHHHHHHhcccCC---hhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCchhHhhHHHHHhhhcchHHHHH
Q 007517 172 GQNGEVQKARVVFDQMREKD---DATWSGMIKVYERKGYELEVIDLFTLMQKEGVRVNFPSLISVLSVCASLASLDHGRQ 248 (600)
Q Consensus 172 ~~~g~~~~A~~~f~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~ 248 (600)
.-.|+.++|++.|.+...-| ...|-.+...|+-.|..++|+..|...-+. ++-..--+.-+.--|...++++.|.+
T Consensus 323 l~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLAe~ 401 (611)
T KOG1173|consen 323 LMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLAEK 401 (611)
T ss_pred HHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHHHH
Confidence 88888888888888766443 356888888888888888888877666542 11111112222234455666666666
Q ss_pred HHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHhhhhhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC--CC--
Q 007517 249 VHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFASKDIVMWNSIISGYAQYGLGEKSLKVFHEMFSS--GV-- 324 (600)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~-- 324 (600)
+|.+..... |.|+.+.+-+.-+.. ..+.+.+|..+|+..... .+
T Consensus 402 Ff~~A~ai~-P~Dplv~~Elgvvay-------------------------------~~~~y~~A~~~f~~~l~~ik~~~~ 449 (611)
T KOG1173|consen 402 FFKQALAIA-PSDPLVLHELGVVAY-------------------------------TYEEYPEALKYFQKALEVIKSVLN 449 (611)
T ss_pred HHHHHHhcC-CCcchhhhhhhheee-------------------------------hHhhhHHHHHHHHHHHHHhhhccc
Confidence 666655543 444444444443333 344555555555544310 00
Q ss_pred -C-CCHHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHH
Q 007517 325 -M-PDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM-PFEPDAIIWGS 401 (600)
Q Consensus 325 -~-p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ 401 (600)
+ --..+++.|..+|.+.+.+++|...+++.... .+.+..+++++.-.|...|+++.|.+.|.+. .++||..+-..
T Consensus 450 e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l--~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~ 527 (611)
T KOG1173|consen 450 EKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLL--SPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISE 527 (611)
T ss_pred cccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHc--CCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHH
Confidence 0 11223444455555555555555555554432 2334555555555555555555555555544 44555444444
Q ss_pred HHH
Q 007517 402 LLG 404 (600)
Q Consensus 402 ll~ 404 (600)
+++
T Consensus 528 lL~ 530 (611)
T KOG1173|consen 528 LLK 530 (611)
T ss_pred HHH
Confidence 443
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.2e-06 Score=87.92 Aligned_cols=170 Identities=9% Similarity=0.099 Sum_probs=126.0
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHhhCCC-----CCcccHHHHHHHHHhCCChHHHHHHHhhcCCCCcchHHHHHHHHhc
Q 007517 68 VVAQTNMVLGYCQDGRVDEGREIFDEMPK-----KNVISWTTMISGYVNNNRIDVARKLFEVMPEKNEVSWTAMLMGYTQ 142 (600)
Q Consensus 68 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~p~~~t~~~ll~~~~~ 142 (600)
+..|-.-+....++|++...+..|+.... .....|...+......|-++.++.++++..+.++..-..-+..++.
T Consensus 102 pRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~eeyie~L~~ 181 (835)
T KOG2047|consen 102 PRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREEYIEYLAK 181 (835)
T ss_pred CHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 46788888888899999999999987654 2345688888888888999999999999988555557778888899
Q ss_pred CCChHHHHHHHhhCC----------CCCccchhHHHHHHHhcCCH---HHHHHHHHhcccC----ChhhHHHHHHHHHHc
Q 007517 143 CGRIQDAWELFKAMP----------MKSVVASNSMILGLGQNGEV---QKARVVFDQMREK----DDATWSGMIKVYERK 205 (600)
Q Consensus 143 ~g~~~~a~~~~~~~~----------~~~~~~~~~li~~~~~~g~~---~~A~~~f~~~~~~----~~~~~~~li~~~~~~ 205 (600)
.+++++|.+.+..++ +.+-..|.-+-+..+++-+. -....+++.+..+ -...|++|..-|.+.
T Consensus 182 ~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~ 261 (835)
T KOG2047|consen 182 SDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRS 261 (835)
T ss_pred ccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHh
Confidence 999999999998888 33344566666665554432 2334556665543 245799999999999
Q ss_pred CChHHHHHHHHHHHHcCCccCchhHhhHHHHHhh
Q 007517 206 GYELEVIDLFTLMQKEGVRVNFPSLISVLSVCAS 239 (600)
Q Consensus 206 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 239 (600)
|.+++|-++|++..+.- .+..-|+.+.++|+.
T Consensus 262 g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~ 293 (835)
T KOG2047|consen 262 GLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQ 293 (835)
T ss_pred hhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHH
Confidence 99999999999887652 334445555555543
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=2e-08 Score=106.56 Aligned_cols=211 Identities=12% Similarity=0.010 Sum_probs=163.7
Q ss_pred cchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHH---------cCCHHHHHhhhhhcCC---CCHHHHHHHHHHHHhcCC
Q 007517 241 ASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIK---------CGELVKGKLIFDNFAS---KDIVMWNSIISGYAQYGL 308 (600)
Q Consensus 241 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~---------~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~ 308 (600)
+++++|...+++.++.. +.+...+..+..+|.. .+++++|...+++..+ .+...|..+...+...|+
T Consensus 275 ~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 275 YSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC
Confidence 45788999999998865 3345566666655542 2448899999988765 477889999899999999
Q ss_pred hHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCC-hHHHHHHHHHHhhcCCHHHHHHH
Q 007517 309 GEKSLKVFHEMFSSGVMPD-DVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPK-TEHYACMVDLLGRAGQVEDAMKL 386 (600)
Q Consensus 309 ~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~ 386 (600)
+++|+..|++..+. .|+ ...+..+..++...|++++|...+++..+. .|+ ...+..++..+...|++++|.+.
T Consensus 354 ~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l---~P~~~~~~~~~~~~~~~~g~~eeA~~~ 428 (553)
T PRK12370 354 YIVGSLLFKQANLL--SPISADIKYYYGWNLFMAGQLEEALQTINECLKL---DPTRAAAGITKLWITYYHTGIDDAIRL 428 (553)
T ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCChhhHHHHHHHHHhccCHHHHHHH
Confidence 99999999999885 565 446777788899999999999999999874 454 33334455567778999999999
Q ss_pred HHhC--CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007517 387 IEAM--PFEPD-AIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMRKR 459 (600)
Q Consensus 387 ~~~m--~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 459 (600)
+++. ...|+ +..+..+..++...|+.++|...++++....|.+......+...|...| ++|...++.+.+.
T Consensus 429 ~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~ 502 (553)
T PRK12370 429 GDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLES 502 (553)
T ss_pred HHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHH
Confidence 9877 22354 4457777788889999999999999998888887777777888888888 4888877777653
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=3e-08 Score=96.32 Aligned_cols=211 Identities=14% Similarity=0.098 Sum_probs=145.6
Q ss_pred cchHHHHHHHHHHHHcC-CCC--chhhHHHHHHHHHHcCCHHHHHhhhhhcCC---CCHHHHHHHHHHHHhcCChHHHHH
Q 007517 241 ASLDHGRQVHAQLVRCQ-FDV--DVYVASVLITMYIKCGELVKGKLIFDNFAS---KDIVMWNSIISGYAQYGLGEKSLK 314 (600)
Q Consensus 241 ~~~~~a~~~~~~~~~~~-~~~--~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~ 314 (600)
+..+.+..-+.+++... +.| ....+..+...|.+.|+.++|...|++..+ .+...|+.+...|...|++++|+.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 44566666666666532 122 235577777888999999999999887654 467889999999999999999999
Q ss_pred HHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC--C
Q 007517 315 VFHEMFSSGVMPD-DVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM--P 391 (600)
Q Consensus 315 ~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~ 391 (600)
.|++..+. .|+ ..++..+..++...|++++|.+.|+...+. .|+..........+...+++++|.+.|++. .
T Consensus 120 ~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~---~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~ 194 (296)
T PRK11189 120 AFDSVLEL--DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD---DPNDPYRALWLYLAESKLDPKQAKENLKQRYEK 194 (296)
T ss_pred HHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh
Confidence 99998874 565 456777777888889999999999988764 354332222233345677899999999664 2
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHh-------ccCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 007517 392 FEPDAIIWGSLLGACRTHMKLDLAEVAAKKLL-------QLEPKNAGPYILLSNIYASQGRFHDVAELRKNMRKRN 460 (600)
Q Consensus 392 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~-------~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 460 (600)
..|+...| . ......|+...+ ..++.+. ++.|+.+..|..++.+|...|++++|...|++..+.+
T Consensus 195 ~~~~~~~~-~--~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 195 LDKEQWGW-N--IVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred CCccccHH-H--HHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 23333222 1 222334554433 2333333 3455666789999999999999999999999887654
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.05 E-value=2e-07 Score=95.27 Aligned_cols=384 Identities=13% Similarity=0.048 Sum_probs=229.5
Q ss_pred CCcchHHHHHHHHHhcCChHHHHHHHhhCCC---CCcccHHHHHHHHHhCCChHHHHHHHhhcCC----CCcc-hHHHHH
Q 007517 66 KDVVAQTNMVLGYCQDGRVDEGREIFDEMPK---KNVISWTTMISGYVNNNRIDVARKLFEVMPE----KNEV-SWTAML 137 (600)
Q Consensus 66 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----p~~~-t~~~ll 137 (600)
.|...|..|.-+..++|+++.+.+.|++... .....|+.+...|...|.-..|+.+++.-.. |+.. .+...-
T Consensus 321 nd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmas 400 (799)
T KOG4162|consen 321 NDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMAS 400 (799)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHH
Confidence 4667777777778888888888888887654 3445688888888888888888888776554 3222 233333
Q ss_pred HHHh-cCCChHHHHHHHhhCC--------CCCccchhHHHHHHHhcC-----------CHHHHHHHHHhcccC---Chhh
Q 007517 138 MGYT-QCGRIQDAWELFKAMP--------MKSVVASNSMILGLGQNG-----------EVQKARVVFDQMREK---DDAT 194 (600)
Q Consensus 138 ~~~~-~~g~~~~a~~~~~~~~--------~~~~~~~~~li~~~~~~g-----------~~~~A~~~f~~~~~~---~~~~ 194 (600)
..|. +.+..+++..+-.+++ ...+..+-.+.-+|...- ...++.+.+++..+. |+.+
T Consensus 401 klc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~ 480 (799)
T KOG4162|consen 401 KLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLV 480 (799)
T ss_pred HHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchH
Confidence 3333 3455555555444443 122233333333333221 123455555555432 2222
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCccCchhHhhHHHHHhhhcchHHHHHHHHHHHHc-CCCCchhhHHHHHHHHH
Q 007517 195 WSGMIKVYERKGYELEVIDLFTLMQKEGVRVNFPSLISVLSVCASLASLDHGRQVHAQLVRC-QFDVDVYVASVLITMYI 273 (600)
Q Consensus 195 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~y~ 273 (600)
.--+.--|+..++.+.|++..++...-+-.-+...+..+.-.+...+++..|..+.+..... |.. -.....-+..-.
T Consensus 481 if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N--~~l~~~~~~i~~ 558 (799)
T KOG4162|consen 481 IFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDN--HVLMDGKIHIEL 558 (799)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhh--hhhchhhhhhhh
Confidence 22233345666777777777777777655556666666666677777777777776655432 210 000000011111
Q ss_pred HcCCHHHHHhh--------------------------hhhcCC-----CC-HHHHHHHHHHHHhcC---ChHHHHHHHHH
Q 007517 274 KCGELVKGKLI--------------------------FDNFAS-----KD-IVMWNSIISGYAQYG---LGEKSLKVFHE 318 (600)
Q Consensus 274 ~~g~~~~A~~~--------------------------~~~~~~-----~~-~~~~~~li~~~~~~g---~~~~A~~~~~~ 318 (600)
..++.++|... +..+.- .| +.++..+..-....+ .++..
T Consensus 559 ~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~------ 632 (799)
T KOG4162|consen 559 TFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELK------ 632 (799)
T ss_pred hcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccc------
Confidence 12232222211 111110 01 112221111111000 01111
Q ss_pred HHHCCCCCCHH--------HHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC
Q 007517 319 MFSSGVMPDDV--------TLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM 390 (600)
Q Consensus 319 m~~~g~~p~~~--------t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 390 (600)
|...-+.|... .+......+...+..++|...+.+..+. .+.....|.-....+...|.+++|.+.|...
T Consensus 633 Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~--~~l~~~~~~~~G~~~~~~~~~~EA~~af~~A 710 (799)
T KOG4162|consen 633 LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI--DPLSASVYYLRGLLLEVKGQLEEAKEAFLVA 710 (799)
T ss_pred cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc--chhhHHHHHHhhHHHHHHHhhHHHHHHHHHH
Confidence 11111222221 2334455677888889998888777653 2445777888888999999999999999877
Q ss_pred -CCCCC-HHHHHHHHHHHHHcCCHHHHHH--HHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007517 391 -PFEPD-AIIWGSLLGACRTHMKLDLAEV--AAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMRKR 459 (600)
Q Consensus 391 -~~~p~-~~~~~~ll~~~~~~g~~~~a~~--~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 459 (600)
.+.|+ +.+..++...+.+.|+...|.. ++..+++++|.++..+..|+.++-+.|+.++|.+.|....+.
T Consensus 711 l~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 711 LALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred HhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 66776 6688899999999999998888 999999999999999999999999999999999999988754
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.05 E-value=6.1e-07 Score=83.50 Aligned_cols=434 Identities=12% Similarity=0.030 Sum_probs=207.5
Q ss_pred HHHHHhCCChHHHHHHHhhCCCCC----cchHHHHHHHHHcCCCHHHHHHHHccCC---CCCcchHHHHHHHHHhcCChH
Q 007517 13 VRGYVEEGMITEAGTLFWQMPEKN----VVSWTVMLGGFIRDSRIDDARRLFDMMP---EKDVVAQTNMVLGYCQDGRVD 85 (600)
Q Consensus 13 l~~~~~~g~~~~A~~~~~~m~~~~----~~~~~~ll~~~~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~ 85 (600)
+.-+..++++..|+.+++.-...+ ..+--.+...+...|++++|...+..+. .++...|-.|...+.-.|.+.
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~ 108 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYI 108 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHH
Confidence 344455566666666665544111 1122223445556667777766666554 233444555555555556666
Q ss_pred HHHHHHhhCCCCCcccHHHHHHHHHhCCChHHHHHHHhhcCCCCcchHHHHHHHHhcCCChHHHHHHHhhCC--CCCccc
Q 007517 86 EGREIFDEMPKKNVISWTTMISGYVNNNRIDVARKLFEVMPEKNEVSWTAMLMGYTQCGRIQDAWELFKAMP--MKSVVA 163 (600)
Q Consensus 86 ~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~--~~~~~~ 163 (600)
+|..+-.+.++ ++..-..|+..-.+.++-++-+.+-..+.... .--.++.+..-..-.+++|..++..+. .++...
T Consensus 109 eA~~~~~ka~k-~pL~~RLlfhlahklndEk~~~~fh~~LqD~~-EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~a 186 (557)
T KOG3785|consen 109 EAKSIAEKAPK-TPLCIRLLFHLAHKLNDEKRILTFHSSLQDTL-EDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIA 186 (557)
T ss_pred HHHHHHhhCCC-ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhH-HHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhh
Confidence 66666554443 12222223333334444444444433333210 111122222222334555666666555 222222
Q ss_pred hhH-HHHHHHhcCCHHHHHHHHHhccc--C-ChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCchhHhhHHHHHh-
Q 007517 164 SNS-MILGLGQNGEVQKARVVFDQMRE--K-DDATWSGMIKVYERKGYELEVIDLFTLMQKEGVRVNFPSLISVLSVCA- 238 (600)
Q Consensus 164 ~~~-li~~~~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~- 238 (600)
.|. +.-+|.+..-++-+.++++--.. | ++..-|.......+.=....|.+-.+++.+.+-. .+.+ .-..|-
T Consensus 187 lNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~--~~~f--~~~l~rH 262 (557)
T KOG3785|consen 187 LNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQ--EYPF--IEYLCRH 262 (557)
T ss_pred hHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccc--cchh--HHHHHHc
Confidence 222 22245555555555544433321 1 2333333333333322222222222333222110 0001 000010
Q ss_pred ---hhcchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHhhhhhcCCCCHHHHHHHHHHHHhcCC-------
Q 007517 239 ---SLASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFASKDIVMWNSIISGYAQYGL------- 308 (600)
Q Consensus 239 ---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~------- 308 (600)
--.+-+.|.+++--+.+. -| ..--.|+-.|.+.+++++|..+..++....+.-|-.-.-.++..|+
T Consensus 263 NLVvFrngEgALqVLP~L~~~--IP--EARlNL~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreH 338 (557)
T KOG3785|consen 263 NLVVFRNGEGALQVLPSLMKH--IP--EARLNLIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSREH 338 (557)
T ss_pred CeEEEeCCccHHHhchHHHhh--Ch--HhhhhheeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHH
Confidence 011223344443333321 11 2223456668888999999888888766544433322222333332
Q ss_pred hHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHH
Q 007517 309 GEKSLKVFHEMFSSGVMPDDVT-LVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLI 387 (600)
Q Consensus 309 ~~~A~~~~~~m~~~g~~p~~~t-~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 387 (600)
..-|.+.|+-.-+.+..-|.+. --++.+++.-..++++..-++.++..- -...|...+ .+.+++...|.+.+|+++|
T Consensus 339 lKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sY-F~NdD~Fn~-N~AQAk~atgny~eaEelf 416 (557)
T KOG3785|consen 339 LKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESY-FTNDDDFNL-NLAQAKLATGNYVEAEELF 416 (557)
T ss_pred HHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCcchhhh-HHHHHHHHhcChHHHHHHH
Confidence 3334444443333333333221 222333344445678888888877763 233344444 4778888888888888888
Q ss_pred HhCC-CC-CCHHHHHHHH-HHHHHcCCHHHHHHHHHHHhccCCCC-CchHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 007517 388 EAMP-FE-PDAIIWGSLL-GACRTHMKLDLAEVAAKKLLQLEPKN-AGPYILLSNIYASQGRFHDVAELRKNMRKRN 460 (600)
Q Consensus 388 ~~m~-~~-p~~~~~~~ll-~~~~~~g~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 460 (600)
-.+. .+ .|..+|.+++ .+|.+.+.++.|..++-++ -.|.+ ......+++-|.+++.+=-|.+.|..+....
T Consensus 417 ~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~--~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lD 491 (557)
T KOG3785|consen 417 IRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKT--NTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILD 491 (557)
T ss_pred hhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhc--CCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccC
Confidence 7772 11 3556665555 4556677887776654332 22322 2334457788888888888888888776543
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.01 E-value=4.8e-06 Score=79.35 Aligned_cols=380 Identities=11% Similarity=0.007 Sum_probs=233.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhCCCC-CcccHHHHHHHHHhCCChH-HHHHHHhhcCCCCcchHHHHHHHHhcC--CCh
Q 007517 71 QTNMVLGYCQDGRVDEGREIFDEMPKK-NVISWTTMISGYVNNNRID-VARKLFEVMPEKNEVSWTAMLMGYTQC--GRI 146 (600)
Q Consensus 71 ~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~li~~~~~~g~~~-~A~~~~~~m~~p~~~t~~~ll~~~~~~--g~~ 146 (600)
-..++..|-..++-++|...+.+.+.. ....-|.|+.-+.+.|.-. ++.--+.+....-+.... .|.+..+. ...
T Consensus 100 ~r~~aecy~~~~n~~~Ai~~l~~~p~t~r~p~inlMla~l~~~g~r~~~~vl~ykevvrecp~aL~-~i~~ll~l~v~g~ 178 (564)
T KOG1174|consen 100 RRRAAECYRQIGNTDMAIETLLQVPPTLRSPRINLMLARLQHHGSRHKEAVLAYKEVIRECPMALQ-VIEALLELGVNGN 178 (564)
T ss_pred HHHHHHHHHHHccchHHHHHHhcCCccccchhHHHHHHHHHhccccccHHHHhhhHHHHhcchHHH-HHHHHHHHhhcch
Confidence 345677888889999999988888763 3334455555554444322 222112221110011111 11111111 011
Q ss_pred HHHHHHHhhCC-CCCccchhHHHHHHHh--cCCHHHHHHHHHhcc-----cCChhhHHHHHHHHHHcCChHHHHHHHHHH
Q 007517 147 QDAWELFKAMP-MKSVVASNSMILGLGQ--NGEVQKARVVFDQMR-----EKDDATWSGMIKVYERKGYELEVIDLFTLM 218 (600)
Q Consensus 147 ~~a~~~~~~~~-~~~~~~~~~li~~~~~--~g~~~~A~~~f~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 218 (600)
+.+--....+. ++........+.+|+. .++-..|...|-.+. ..|+.....+...+...|+.++|...|++.
T Consensus 179 e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~ 258 (564)
T KOG1174|consen 179 EINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSST 258 (564)
T ss_pred hhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHH
Confidence 11111111111 3333333344454444 344444444433322 237788899999999999999999999988
Q ss_pred HHcCCccCchhH-hhHHHHHhhhcchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHhhhhhcCC---CCHH
Q 007517 219 QKEGVRVNFPSL-ISVLSVCASLASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFAS---KDIV 294 (600)
Q Consensus 219 ~~~g~~p~~~t~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~ 294 (600)
+.. .|+..+- -...-.+...|+++....+...+.... +.+..-|-.-........+.+.|+.+-++... +++.
T Consensus 259 ~~~--dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~ 335 (564)
T KOG1174|consen 259 LCA--NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHE 335 (564)
T ss_pred hhC--ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccch
Confidence 763 3443321 111222345667776666655554432 11111121222233445678888888777655 3444
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHH-H
Q 007517 295 MWNSIISGYAQYGLGEKSLKVFHEMFSSGVMP-DDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMV-D 372 (600)
Q Consensus 295 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li-~ 372 (600)
.+-.-...+.+.|++++|.-.|+..+. +.| +-..|..|+.+|...|...+|.-.-+...+. ++.+..+.+.+. +
T Consensus 336 alilKG~lL~~~~R~~~A~IaFR~Aq~--Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~--~~~sA~~LtL~g~~ 411 (564)
T KOG1174|consen 336 ALILKGRLLIALERHTQAVIAFRTAQM--LAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL--FQNSARSLTLFGTL 411 (564)
T ss_pred HHHhccHHHHhccchHHHHHHHHHHHh--cchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH--hhcchhhhhhhcce
Confidence 554445678889999999999999876 454 5568999999999999999998877766553 344555555442 3
Q ss_pred HHhh-cCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHH
Q 007517 373 LLGR-AGQVEDAMKLIEAM-PFEPD-AIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDV 449 (600)
Q Consensus 373 ~~~~-~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 449 (600)
.+.- ----++|.+++++. .++|+ ....+.+...|...|..+.+..++++.+...|+. .....|+..+...+.+.+|
T Consensus 412 V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~-~LH~~Lgd~~~A~Ne~Q~a 490 (564)
T KOG1174|consen 412 VLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDV-NLHNHLGDIMRAQNEPQKA 490 (564)
T ss_pred eeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhcccc-HHHHHHHHHHHHhhhHHHH
Confidence 3322 22357889999877 67787 4456777778899999999999999999999987 7889999999999999999
Q ss_pred HHHHHHHHhC
Q 007517 450 AELRKNMRKR 459 (600)
Q Consensus 450 ~~~~~~m~~~ 459 (600)
...|......
T Consensus 491 m~~y~~ALr~ 500 (564)
T KOG1174|consen 491 MEYYYKALRQ 500 (564)
T ss_pred HHHHHHHHhc
Confidence 9999877653
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.9e-06 Score=88.47 Aligned_cols=391 Identities=11% Similarity=0.073 Sum_probs=250.1
Q ss_pred CCCcchHHHHHHHHHcCCCHHHHHHHHccCCC---CCcchHHHHHHHHHhcCChHHHHHHHhhCCC----CCccc-HHHH
Q 007517 34 EKNVVSWTVMLGGFIRDSRIDDARRLFDMMPE---KDVVAQTNMVLGYCQDGRVDEGREIFDEMPK----KNVIS-WTTM 105 (600)
Q Consensus 34 ~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~~-~~~l 105 (600)
..|...|..|.-+...+|++..+-+.|++... .....|+.+-..|...|.-..|..++++-.. |+..+ +-..
T Consensus 320 qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lma 399 (799)
T KOG4162|consen 320 QNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMA 399 (799)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHH
Confidence 46888999999999999999999999998763 3456789999999999999999999987654 22222 2222
Q ss_pred HHHHHh-CCChHHHHHHHhhcCC--------CCcchHHHHHHHHhcC-----------CChHHHHHHHhhCC---CCCcc
Q 007517 106 ISGYVN-NNRIDVARKLFEVMPE--------KNEVSWTAMLMGYTQC-----------GRIQDAWELFKAMP---MKSVV 162 (600)
Q Consensus 106 i~~~~~-~g~~~~A~~~~~~m~~--------p~~~t~~~ll~~~~~~-----------g~~~~a~~~~~~~~---~~~~~ 162 (600)
-..|.+ .+..+++++.-.+... ..+..|..+.-+|... ....++.+.+++.+ +.|+.
T Consensus 400 sklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~ 479 (799)
T KOG4162|consen 400 SKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPL 479 (799)
T ss_pred HHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCch
Confidence 233332 3555565555444332 3334444444444321 11345666777775 55555
Q ss_pred chhHHHHHHHhcCCHHHHHHHHHhccc----CChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCccC-chhHhhHHHHH
Q 007517 163 ASNSMILGLGQNGEVQKARVVFDQMRE----KDDATWSGMIKVYERKGYELEVIDLFTLMQKEGVRVN-FPSLISVLSVC 237 (600)
Q Consensus 163 ~~~~li~~~~~~g~~~~A~~~f~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~ 237 (600)
+---+.--|+..++++.|.+...+..+ .+...|..+.-.+...+++.+|+.+.+.....- |+ ..-...-+..-
T Consensus 480 ~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~--~~N~~l~~~~~~i~ 557 (799)
T KOG4162|consen 480 VIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF--GDNHVLMDGKIHIE 557 (799)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh--hhhhhhchhhhhhh
Confidence 555555668889999999988877653 378899999999999999999999988766541 11 00000001111
Q ss_pred hhhcchHHHHHH-------HH----------HHHH----cCC-------CCchhhHHHHHHHHH---HcCCHHHHHhhhh
Q 007517 238 ASLASLDHGRQV-------HA----------QLVR----CQF-------DVDVYVASVLITMYI---KCGELVKGKLIFD 286 (600)
Q Consensus 238 ~~~~~~~~a~~~-------~~----------~~~~----~~~-------~~~~~~~~~li~~y~---~~g~~~~A~~~~~ 286 (600)
...++.+++... ++ +... .|. ...+.++..+..... +.-..+..+..+.
T Consensus 558 ~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~ 637 (799)
T KOG4162|consen 558 LTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSST 637 (799)
T ss_pred hhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCccc
Confidence 112222222211 11 1111 111 111222222222111 1111111222222
Q ss_pred hcCCCC------HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHhcCC
Q 007517 287 NFASKD------IVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPD-DVTLVGVLSACSYTGKVKEGREIFESMKSKYL 359 (600)
Q Consensus 287 ~~~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~ 359 (600)
..+.++ ...|......+...++.++|...+.+.... .|- ...|...-..+...|..++|.+.|.....
T Consensus 638 ~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~--~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~--- 712 (799)
T KOG4162|consen 638 VLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI--DPLSASVYYLRGLLLEVKGQLEEAKEAFLVALA--- 712 (799)
T ss_pred ccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc--chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHh---
Confidence 222333 245667778888999999999888887653 343 33454444566778999999999988765
Q ss_pred CCCC-hHHHHHHHHHHhhcCCHHHHHH--HHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCc
Q 007517 360 VEPK-TEHYACMVDLLGRAGQVEDAMK--LIEAM-PFEP-DAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAG 431 (600)
Q Consensus 360 ~~p~-~~~~~~li~~~~~~g~~~~A~~--~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 431 (600)
+.|+ +...+++..++.+.|+..-|.. ++..+ .+.| +...|..|...+.+.|+.+.|...|..+.++++.+|.
T Consensus 713 ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 713 LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence 4565 7788999999999998777777 77776 5555 6889999999999999999999999999999887764
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.9e-07 Score=90.84 Aligned_cols=215 Identities=13% Similarity=0.000 Sum_probs=138.5
Q ss_pred ChHHHHHHHHHHHHcC-CccC--chhHhhHHHHHhhhcchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHh
Q 007517 207 YELEVIDLFTLMQKEG-VRVN--FPSLISVLSVCASLASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKL 283 (600)
Q Consensus 207 ~~~~A~~~~~~m~~~g-~~p~--~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~ 283 (600)
..+.++.-+.++.... ..|+ ...|......+...|+.+.|...+...++.. +.+...++.+...|...|++++|..
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 4445555555554321 1111 1234444445556666666666666666654 4456788888888888999999988
Q ss_pred hhhhcCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCC
Q 007517 284 IFDNFAS---KDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLV 360 (600)
Q Consensus 284 ~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~ 360 (600)
.|+...+ .+..+|..+...+...|++++|++.|++..+. .|+..........+...++.++|...|...... .
T Consensus 120 ~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~--~ 195 (296)
T PRK11189 120 AFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYEK--L 195 (296)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh--C
Confidence 8887754 35678888888899999999999999998874 555432222222344567899999999765542 2
Q ss_pred CCChHHHHHHHHHHhhcCCHHH--HHHHHHhC-CC----CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC
Q 007517 361 EPKTEHYACMVDLLGRAGQVED--AMKLIEAM-PF----EP-DAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKN 429 (600)
Q Consensus 361 ~p~~~~~~~li~~~~~~g~~~~--A~~~~~~m-~~----~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 429 (600)
.|+...+ .++..+ .|++.+ +.+.+.+. .. .| ....|..+...+.+.|++++|...|+++++.+|.+
T Consensus 196 ~~~~~~~-~~~~~~--lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~ 269 (296)
T PRK11189 196 DKEQWGW-NIVEFY--LGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYN 269 (296)
T ss_pred CccccHH-HHHHHH--ccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCch
Confidence 3333222 333333 444433 33333321 11 12 23578999999999999999999999999999754
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.96 E-value=7.1e-08 Score=84.79 Aligned_cols=163 Identities=17% Similarity=0.136 Sum_probs=139.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHH
Q 007517 295 MWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDD-VTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDL 373 (600)
Q Consensus 295 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 373 (600)
+...|.-+|.+.|+...|.+-+++.++. .|+. .++..+...|.+.|..+.|.+-|+...+.. +.+-.+.|....-
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~--DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~--p~~GdVLNNYG~F 112 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEH--DPSYYLAHLVRAHYYQKLGENDLADESYRKALSLA--PNNGDVLNNYGAF 112 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC--CCccchhhhhhHH
Confidence 3455677899999999999999999885 5665 478888889999999999999999987632 3457888999999
Q ss_pred HhhcCCHHHHHHHHHhCCCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHH
Q 007517 374 LGRAGQVEDAMKLIEAMPFEP----DAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDV 449 (600)
Q Consensus 374 ~~~~g~~~~A~~~~~~m~~~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 449 (600)
++..|++++|...|++.-..| -..+|..+..+..+.|+.+.|...+++.++.+|+.+.+...++......|++-.|
T Consensus 113 LC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 113 LCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred HHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHH
Confidence 999999999999999882233 2567888888889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCC
Q 007517 450 AELRKNMRKRNV 461 (600)
Q Consensus 450 ~~~~~~m~~~g~ 461 (600)
..+++.....+.
T Consensus 193 r~~~~~~~~~~~ 204 (250)
T COG3063 193 RLYLERYQQRGG 204 (250)
T ss_pred HHHHHHHHhccc
Confidence 999998887654
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.6e-06 Score=87.86 Aligned_cols=52 Identities=15% Similarity=0.119 Sum_probs=23.5
Q ss_pred HHHHHHhCCChHHHHHHHhhcCC--CCcchHHHHHHHHhcCCChHHHHHHHhhC
Q 007517 105 MISGYVNNNRIDVARKLFEVMPE--KNEVSWTAMLMGYTQCGRIQDAWELFKAM 156 (600)
Q Consensus 105 li~~~~~~g~~~~A~~~~~~m~~--p~~~t~~~ll~~~~~~g~~~~a~~~~~~~ 156 (600)
.|..|.+.|.+..|......=.. .|......+..++.+..-+++|-.+|+.+
T Consensus 621 aiqlyika~~p~~a~~~a~n~~~l~~de~il~~ia~alik~elydkagdlfeki 674 (1636)
T KOG3616|consen 621 AIQLYIKAGKPAKAARAALNDEELLADEEILEHIAAALIKGELYDKAGDLFEKI 674 (1636)
T ss_pred HHHHHHHcCCchHHHHhhcCHHHhhccHHHHHHHHHHHHhhHHHHhhhhHHHHh
Confidence 34556666665555543321111 34444444444444444444444444443
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.4e-07 Score=95.72 Aligned_cols=162 Identities=15% Similarity=0.183 Sum_probs=116.7
Q ss_pred hhHHHHHHHHHHcCCHHHHHhhhhhcCC----------CCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHC---CCCCCH
Q 007517 263 YVASVLITMYIKCGELVKGKLIFDNFAS----------KDI-VMWNSIISGYAQYGLGEKSLKVFHEMFSS---GVMPDD 328 (600)
Q Consensus 263 ~~~~~li~~y~~~g~~~~A~~~~~~~~~----------~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~ 328 (600)
.+++.|..+|.+.|++++|...+++..+ +.+ ...+.++..+...+++++|..+++...+. -..++.
T Consensus 284 ~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~ 363 (508)
T KOG1840|consen 284 ATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDN 363 (508)
T ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccc
Confidence 3445555667777777776666654321 222 23566677788888899998888875431 133333
Q ss_pred ----HHHHHHHHHHhccCCHHHHHHHHHHhHhcC----C-CCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhC--------
Q 007517 329 ----VTLVGVLSACSYTGKVKEGREIFESMKSKY----L-VEP-KTEHYACMVDLLGRAGQVEDAMKLIEAM-------- 390 (600)
Q Consensus 329 ----~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~----~-~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-------- 390 (600)
.+++.+-..+.+.|++++|.++|+++.... + ..+ .-..++.|...|.+.+++++|.++|.+.
T Consensus 364 ~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g 443 (508)
T KOG1840|consen 364 VNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCG 443 (508)
T ss_pred hHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhC
Confidence 368888889999999999999998876532 1 112 2456788899999999999999998875
Q ss_pred CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 007517 391 PFEPD-AIIWGSLLGACRTHMKLDLAEVAAKKLLQ 424 (600)
Q Consensus 391 ~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 424 (600)
+-.|+ ..+|..|...|...|+++.|+++.+++..
T Consensus 444 ~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 444 PDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred CCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 33455 45799999999999999999999998774
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.94 E-value=5.5e-08 Score=89.38 Aligned_cols=227 Identities=11% Similarity=0.031 Sum_probs=148.4
Q ss_pred hHHHHHHHhcCCHHHHHHHHHhccc--CChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCchhHhhHHHHHhhhcc
Q 007517 165 NSMILGLGQNGEVQKARVVFDQMRE--KDDATWSGMIKVYERKGYELEVIDLFTLMQKEGVRVNFPSLISVLSVCASLAS 242 (600)
Q Consensus 165 ~~li~~~~~~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 242 (600)
+-+..+|.+.|-+.+|.+.|+...+ +-+.||-.|-++|.+-.+++.|+.+|.+-.+. .|-.+||.
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l----------- 293 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYL----------- 293 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhh-----------
Confidence 3466677777777777777766543 35666666777777777777777777665543 34444442
Q ss_pred hHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHhhhhhcCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 007517 243 LDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFAS---KDIVMWNSIISGYAQYGLGEKSLKVFHEM 319 (600)
Q Consensus 243 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m 319 (600)
......+-..++.++|.++|+...+ .++.+..++..+|.-.++++-|+.+|+++
T Consensus 294 -----------------------~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRi 350 (478)
T KOG1129|consen 294 -----------------------LGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRI 350 (478)
T ss_pred -----------------------hhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHH
Confidence 2233333344445555555544432 24555555666777778888888888888
Q ss_pred HHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCC--hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-C
Q 007517 320 FSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPK--TEHYACMVDLLGRAGQVEDAMKLIEAM-PFEP-D 395 (600)
Q Consensus 320 ~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~ 395 (600)
.+.|+. +...|..+--+|.-.++++-+..-|++..... -.|+ .++|-.+.......|++.-|.+-|+-. ...| +
T Consensus 351 LqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~RAlsta-t~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h 428 (478)
T KOG1129|consen 351 LQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQRALSTA-TQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQH 428 (478)
T ss_pred HHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHHHHHhhc-cCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcch
Confidence 887753 44556666667777788888887777766532 1233 566777888888888888888888765 2233 4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC
Q 007517 396 AIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKN 429 (600)
Q Consensus 396 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 429 (600)
...++.|.-.-.+.|+++.|..++..+....|+-
T Consensus 429 ~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m 462 (478)
T KOG1129|consen 429 GEALNNLAVLAARSGDILGARSLLNAAKSVMPDM 462 (478)
T ss_pred HHHHHhHHHHHhhcCchHHHHHHHHHhhhhCccc
Confidence 5677777777778888888888888888877764
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.94 E-value=6.4e-08 Score=88.95 Aligned_cols=219 Identities=11% Similarity=0.045 Sum_probs=169.7
Q ss_pred HhhhcchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHhhhhhcCC--C-CHHHHHHHHHHHHhcCChHHHH
Q 007517 237 CASLASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFAS--K-DIVMWNSIISGYAQYGLGEKSL 313 (600)
Q Consensus 237 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~ 313 (600)
+.+.|.+.+|...+....+. .|.+.+|-.|-..|.+..+.+.|+.+|.+..+ | |+....-+...+-..++.++|.
T Consensus 233 ylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~ 310 (478)
T KOG1129|consen 233 YLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDAL 310 (478)
T ss_pred HHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHH
Confidence 33334444444433333333 23444566677778888888888888877655 3 4444455667777889999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC---
Q 007517 314 KVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM--- 390 (600)
Q Consensus 314 ~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--- 390 (600)
++|+...+.. ..|.....++...|.-.++.+.|..++.++..- |+ .+++.|+.+.-.+.-.+++|-++.-|++.
T Consensus 311 ~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqm-G~-~speLf~NigLCC~yaqQ~D~~L~sf~RAlst 387 (478)
T KOG1129|consen 311 QLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQM-GA-QSPELFCNIGLCCLYAQQIDLVLPSFQRALST 387 (478)
T ss_pred HHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHh-cC-CChHHHhhHHHHHHhhcchhhhHHHHHHHHhh
Confidence 9999998752 334446666677788889999999999999874 64 67889999999999999999999988876
Q ss_pred CCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 007517 391 PFEPD--AIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMRKRN 460 (600)
Q Consensus 391 ~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 460 (600)
.-.|+ ..+|..|.......||+..|.+.|+-++..+|++...++.|+-.-.+.|+.++|+.++...++..
T Consensus 388 at~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 388 ATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVM 459 (478)
T ss_pred ccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence 22344 56799998888899999999999999999999999999999999999999999999999887654
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.6e-07 Score=90.03 Aligned_cols=248 Identities=15% Similarity=0.082 Sum_probs=150.5
Q ss_pred HHhcCCHHHHHHHHHhcccC----ChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCchhHhhHHHHHhhhcchHHH
Q 007517 171 LGQNGEVQKARVVFDQMREK----DDATWSGMIKVYERKGYELEVIDLFTLMQKEGVRVNFPSLISVLSVCASLASLDHG 246 (600)
Q Consensus 171 ~~~~g~~~~A~~~f~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 246 (600)
+.-.|.+..++.-.+ .... +.....-+.++|...|+++.++.- .... -.|....+..+...+....+.+.+
T Consensus 11 ~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~e---i~~~-~~~~l~av~~la~y~~~~~~~e~~ 85 (290)
T PF04733_consen 11 QFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLSE---IKKS-SSPELQAVRLLAEYLSSPSDKESA 85 (290)
T ss_dssp HHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHHH---S-TT-SSCCCHHHHHHHHHHCTSTTHHCH
T ss_pred HHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHHH---hccC-CChhHHHHHHHHHHHhCccchHHH
Confidence 334566666665444 2111 233445566778888887765433 2222 255655555555555443444444
Q ss_pred HHHHHHHHHcCCC-CchhhHHHHHHHHHHcCCHHHHHhhhhhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 007517 247 RQVHAQLVRCQFD-VDVYVASVLITMYIKCGELVKGKLIFDNFASKDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVM 325 (600)
Q Consensus 247 ~~~~~~~~~~~~~-~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 325 (600)
..-+......... .+..+......+|...|++++|++++... .+.......+..|.+.++++.|.+.++.|.+. .
T Consensus 86 l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~ 161 (290)
T PF04733_consen 86 LEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQI--D 161 (290)
T ss_dssp HHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--S
T ss_pred HHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--C
Confidence 4333333222222 23333344445677789999999998876 56666677788899999999999999999863 3
Q ss_pred CCHHHHHHHHHHHh----ccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHH
Q 007517 326 PDDVTLVGVLSACS----YTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM-PFEP-DAIIW 399 (600)
Q Consensus 326 p~~~t~~~ll~a~~----~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~ 399 (600)
.|. +...+..++. ....+.+|..+|+++..++ .+++.+.+.+.-+....|++++|.+++++. ...| ++.+.
T Consensus 162 eD~-~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~--~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~L 238 (290)
T PF04733_consen 162 EDS-ILTQLAEAWVNLATGGEKYQDAFYIFEELSDKF--GSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTL 238 (290)
T ss_dssp CCH-HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS----SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHH
T ss_pred CcH-HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHH
Confidence 443 3444444432 2346888888888887754 567778888888888888888888888765 3233 45566
Q ss_pred HHHHHHHHHcCCH-HHHHHHHHHHhccCCCCC
Q 007517 400 GSLLGACRTHMKL-DLAEVAAKKLLQLEPKNA 430 (600)
Q Consensus 400 ~~ll~~~~~~g~~-~~a~~~~~~~~~~~p~~~ 430 (600)
..++......|+. +.+.+...++....|++|
T Consensus 239 aNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~ 270 (290)
T PF04733_consen 239 ANLIVCSLHLGKPTEAAERYLSQLKQSNPNHP 270 (290)
T ss_dssp HHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSH
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHhCCCCh
Confidence 6677776777776 667778888877888764
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.5e-05 Score=82.33 Aligned_cols=254 Identities=17% Similarity=0.203 Sum_probs=156.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCccC-chhHhhHHHHHhhhcchHHHHHHHHHHHHcCCCCchhhHHHHHHHHH
Q 007517 195 WSGMIKVYERKGYELEVIDLFTLMQKEGVRVN-FPSLISVLSVCASLASLDHGRQVHAQLVRCQFDVDVYVASVLITMYI 273 (600)
Q Consensus 195 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~ 273 (600)
+.-+...|...|++++|+++.++.... .|+ ...|..-...+-+.|++.+|....+...+.. ..|.++-+..+..+.
T Consensus 197 ~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~L 273 (517)
T PF12569_consen 197 LYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLL 273 (517)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHH
Confidence 355677788899999999999988876 465 4466777888889999999999999998876 567888888899999
Q ss_pred HcCCHHHHHhhhhhcCCCC------H----HHH--HHHHHHHHhcCChHHHHHHHHHHHHC--CCCCC------------
Q 007517 274 KCGELVKGKLIFDNFASKD------I----VMW--NSIISGYAQYGLGEKSLKVFHEMFSS--GVMPD------------ 327 (600)
Q Consensus 274 ~~g~~~~A~~~~~~~~~~~------~----~~~--~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~------------ 327 (600)
++|++++|.+++.....++ . ..| .....+|.+.|++..|++.|....+. .+.-|
T Consensus 274 Ra~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~~~DQfDFH~Yc~RK~ 353 (517)
T PF12569_consen 274 RAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFDDFEEDQFDFHSYCLRKM 353 (517)
T ss_pred HCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccHHHHHHhhc
Confidence 9999999999887766543 1 234 33467889999999998877665432 11222
Q ss_pred -HHHHHHHHHHHhccCC-------HHHHHHHHHHhHhcCCCCC-----------ChHHHHHHHHHH---hhcCCHHHHHH
Q 007517 328 -DVTLVGVLSACSYTGK-------VKEGREIFESMKSKYLVEP-----------KTEHYACMVDLL---GRAGQVEDAMK 385 (600)
Q Consensus 328 -~~t~~~ll~a~~~~g~-------~~~a~~~~~~~~~~~~~~p-----------~~~~~~~li~~~---~~~g~~~~A~~ 385 (600)
..+|..+|...-+... ...|.+++-.+........ +..--..+..-- .+...-+++.+
T Consensus 354 t~r~Y~~~L~~ed~l~~~~~y~raa~~ai~iYl~l~d~~~~~~~~~~~~~~~~~~~~e~Kk~~kK~kK~~~k~~~~~~~~ 433 (517)
T PF12569_consen 354 TLRAYVDMLRWEDKLRSHPFYRRAAKGAIRIYLELHDKPEAKQGEEQEADNENMSAAERKKAKKKAKKAAKKAKKEEAEK 433 (517)
T ss_pred cHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhcCcccccccccccccccCChHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 2233333332221111 1234444444332210000 000001111000 11111111211
Q ss_pred HHH-----------hC----C--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchH
Q 007517 386 LIE-----------AM----P--FEPDAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHD 448 (600)
Q Consensus 386 ~~~-----------~m----~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 448 (600)
.-. .. + ..||+.- ..|+ ....-.++|.++++-+.+..|++..++..-..+|.+.|++--
T Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~D~Dp~G-ekL~---~t~dPLe~A~kfl~pL~~~a~~~~et~~laFeVy~Rk~K~LL 509 (517)
T PF12569_consen 434 AAKKEPKKQQNKSKKKEKVEPKKKDDDPLG-EKLL---KTEDPLEEAMKFLKPLLELAPDNIETHLLAFEVYLRKGKYLL 509 (517)
T ss_pred HHhhhhhhhhccccccccccCCcCCCCccH-HHHh---cCCcHHHHHHHHHHHHHHhCccchhhHHHHhHHHHhcCcHHH
Confidence 110 00 1 1122221 1122 233467889999999999999999999999999999999988
Q ss_pred HHHHHHH
Q 007517 449 VAELRKN 455 (600)
Q Consensus 449 a~~~~~~ 455 (600)
|.+.+++
T Consensus 510 aLqaL~k 516 (517)
T PF12569_consen 510 ALQALKK 516 (517)
T ss_pred HHHHHHh
Confidence 8876653
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.2e-07 Score=94.06 Aligned_cols=218 Identities=14% Similarity=0.146 Sum_probs=171.8
Q ss_pred hhhcchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHhhhhhcCC---CCHHHHHHHHHHHHhcCChHHHHH
Q 007517 238 ASLASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFAS---KDIVMWNSIISGYAQYGLGEKSLK 314 (600)
Q Consensus 238 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~ 314 (600)
.+.|++..|.-.|+..++.. |.+...|.-|...-...++-..|...+.+..+ .|....-+|.-.|...|.-.+|++
T Consensus 296 m~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~ 374 (579)
T KOG1125|consen 296 MKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALK 374 (579)
T ss_pred HhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHH
Confidence 46677888888888888776 56778888888888888888888888877654 467778888888999999899999
Q ss_pred HHHHHHHCCCCCCHHHHHH--------HHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHH
Q 007517 315 VFHEMFSSGVMPDDVTLVG--------VLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKL 386 (600)
Q Consensus 315 ~~~~m~~~g~~p~~~t~~~--------ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 386 (600)
.++.-+... |...-... .-........+....++|-.+....+..+|++++.+|.-+|--.|.+++|..-
T Consensus 375 ~L~~Wi~~~--p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDc 452 (579)
T KOG1125|consen 375 MLDKWIRNK--PKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDC 452 (579)
T ss_pred HHHHHHHhC--ccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHH
Confidence 998876532 11110000 00122223345556667777766656668899999999999999999999999
Q ss_pred HHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007517 387 IEAM-PFEP-DAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMRK 458 (600)
Q Consensus 387 ~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 458 (600)
|+.. .++| |..+||-|...+....+.++|+..|.+++++.|.-......|+-.|...|.++||.+.|-....
T Consensus 453 f~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 453 FEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 9988 6677 5778999999999999999999999999999999999999999999999999999998877654
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.80 E-value=5.8e-06 Score=77.16 Aligned_cols=396 Identities=11% Similarity=0.051 Sum_probs=242.6
Q ss_pred HHHHcCCCHHHHHHHHccCCCC------CcchHHHHHHHHHhcCChHHHHHHHhhCCC---CCcccHHHHHHHHHhCCCh
Q 007517 45 GGFIRDSRIDDARRLFDMMPEK------DVVAQTNMVLGYCQDGRVDEGREIFDEMPK---KNVISWTTMISGYVNNNRI 115 (600)
Q Consensus 45 ~~~~~~g~~~~A~~~~~~m~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~ 115 (600)
.-+....++..|+.+++.-... +...| +...+.+.|++++|...+.-+.+ ++...|-.|.-.+.-.|.+
T Consensus 30 edfls~rDytGAislLefk~~~~~EEE~~~~lW--ia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 30 EDFLSNRDYTGAISLLEFKLNLDREEEDSLQLW--IAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQY 107 (557)
T ss_pred HHHHhcccchhHHHHHHHhhccchhhhHHHHHH--HHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHH
Confidence 3344566777788777655411 22222 34566788999999998886554 5666777787777778888
Q ss_pred HHHHHHHhhcCCCCcchHH-HHHHHHhcCCChHHHHHHHhhCCCCCccchhHHHHHHHhcCCHHHHHHHHHhcccC--Ch
Q 007517 116 DVARKLFEVMPEKNEVSWT-AMLMGYTQCGRIQDAWELFKAMPMKSVVASNSMILGLGQNGEVQKARVVFDQMREK--DD 192 (600)
Q Consensus 116 ~~A~~~~~~m~~p~~~t~~-~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~--~~ 192 (600)
.+|..+-... |+..... .++....+.++-++-.++++.+.+.. .-.-+|..+....-.+.+|++++.++... +-
T Consensus 108 ~eA~~~~~ka--~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~-EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey 184 (557)
T KOG3785|consen 108 IEAKSIAEKA--PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTL-EDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEY 184 (557)
T ss_pred HHHHHHHhhC--CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhH-HHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhh
Confidence 8888776554 4444333 34455567788888888887776222 22234555544455688999999988754 44
Q ss_pred hhHHHH-HHHHHHcCChHHHHHHHHHHHHcCCccCchhHhhHHHHH--hhhcchHHHHHHHHHHHHcCCCCchhhHHHHH
Q 007517 193 ATWSGM-IKVYERKGYELEVIDLFTLMQKEGVRVNFPSLISVLSVC--ASLASLDHGRQVHAQLVRCQFDVDVYVASVLI 269 (600)
Q Consensus 193 ~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 269 (600)
...|.- .-.|.+..-++-+.+++.--.+. .||+ |+..=+.+| .+.=+-..|.+-...+.+.+-.. -..+
T Consensus 185 ~alNVy~ALCyyKlDYydvsqevl~vYL~q--~pdS-tiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~-----~~f~ 256 (557)
T KOG3785|consen 185 IALNVYMALCYYKLDYYDVSQEVLKVYLRQ--FPDS-TIAKNLKACNLFRLINGRTAEDEKKELADNIDQE-----YPFI 256 (557)
T ss_pred hhhHHHHHHHHHhcchhhhHHHHHHHHHHh--CCCc-HHHHHHHHHHHhhhhccchhHHHHHHHHhccccc-----chhH
Confidence 445543 34667788888888887776654 3443 333333344 33322233333333443332111 0112
Q ss_pred HHHHHc-----CCHHHHHhhhhhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-----h
Q 007517 270 TMYIKC-----GELVKGKLIFDNFASKDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSAC-----S 339 (600)
Q Consensus 270 ~~y~~~-----g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~-----~ 339 (600)
.-.++. .+-+.|++++-.+...=+.+--.|+--|.+.++..+|..+.+++.- ..|-......+..+- .
T Consensus 257 ~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aalGQe~g 334 (557)
T KOG3785|consen 257 EYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAALGQETG 334 (557)
T ss_pred HHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHHhhhhcC
Confidence 222221 2335666666544433333444566678899999999999887642 345555444444332 1
Q ss_pred ccCCHHHHHHHHHHhHhcCCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCCHHHHH
Q 007517 340 YTGKVKEGREIFESMKSKYLVEPK-TEHYACMVDLLGRAGQVEDAMKLIEAMP--FEPDAIIWGSLLGACRTHMKLDLAE 416 (600)
Q Consensus 340 ~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~ll~~~~~~g~~~~a~ 416 (600)
....++-|.+.|+..-+. +..-| +.--.++...+.-..++|+.+-.++... +..|...--.+..+.+..|++.+|+
T Consensus 335 SreHlKiAqqffqlVG~S-a~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaE 413 (557)
T KOG3785|consen 335 SREHLKIAQQFFQLVGES-ALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAE 413 (557)
T ss_pred cHHHHHHHHHHHHHhccc-ccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHH
Confidence 122356677777755332 33322 3334456666666678888888887762 3344444455788999999999999
Q ss_pred HHHHHHhccCCCCCchHH-HHHHHHHhcCCchHHHHHHHHH
Q 007517 417 VAAKKLLQLEPKNAGPYI-LLSNIYASQGRFHDVAELRKNM 456 (600)
Q Consensus 417 ~~~~~~~~~~p~~~~~~~-~l~~~~~~~g~~~~a~~~~~~m 456 (600)
++|-+....+-.+..+|. .|+..|.+.|+.+-|+.++-++
T Consensus 414 elf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~ 454 (557)
T KOG3785|consen 414 ELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKT 454 (557)
T ss_pred HHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhc
Confidence 999888777644445554 5889999999999999876654
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.80 E-value=6.4e-06 Score=76.62 Aligned_cols=304 Identities=16% Similarity=0.145 Sum_probs=180.6
Q ss_pred HHHHHHHHhCCChHHHHHHHhhcCCCCcchHHHHH---HHHhcCCChHHHHHHHhhCCCCCccchhHH---HHHHHhcCC
Q 007517 103 TTMISGYVNNNRIDVARKLFEVMPEKNEVSWTAML---MGYTQCGRIQDAWELFKAMPMKSVVASNSM---ILGLGQNGE 176 (600)
Q Consensus 103 ~~li~~~~~~g~~~~A~~~~~~m~~p~~~t~~~ll---~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l---i~~~~~~g~ 176 (600)
--+.+.+...|++..|+.-|....+.|+..|.++. ..|...|+-..|..-+..+++.-+..+.+- ...+.+.|.
T Consensus 42 lElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Ge 121 (504)
T KOG0624|consen 42 LELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGE 121 (504)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhccc
Confidence 34667777788888888888888885555554443 356667777777777777663222222222 235677888
Q ss_pred HHHHHHHHHhcccCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCchhHhhHHHHHhhhcchHHHHHHHHHHHHc
Q 007517 177 VQKARVVFDQMREKDDATWSGMIKVYERKGYELEVIDLFTLMQKEGVRVNFPSLISVLSVCASLASLDHGRQVHAQLVRC 256 (600)
Q Consensus 177 ~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 256 (600)
++.|..-|+.+.+.++.- +....++.+.-..++-. .....+......|+...++.....+++.
T Consensus 122 le~A~~DF~~vl~~~~s~-~~~~eaqskl~~~~e~~----------------~l~~ql~s~~~~GD~~~ai~~i~~llEi 184 (504)
T KOG0624|consen 122 LEQAEADFDQVLQHEPSN-GLVLEAQSKLALIQEHW----------------VLVQQLKSASGSGDCQNAIEMITHLLEI 184 (504)
T ss_pred HHHHHHHHHHHHhcCCCc-chhHHHHHHHHhHHHHH----------------HHHHHHHHHhcCCchhhHHHHHHHHHhc
Confidence 888888887776533210 01111111111111111 1222334445567888888888888876
Q ss_pred CCCCchhhHHHHHHHHHHcCCHHHHHhhhhh---cCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 007517 257 QFDVDVYVASVLITMYIKCGELVKGKLIFDN---FASKDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVG 333 (600)
Q Consensus 257 ~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~---~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 333 (600)
. +.|...+..-..+|...|++..|..=+.. +...+.....-+-..+...|+.+.++...++-.+ +.||......
T Consensus 185 ~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK--ldpdHK~Cf~ 261 (504)
T KOG0624|consen 185 Q-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLK--LDPDHKLCFP 261 (504)
T ss_pred C-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc--cCcchhhHHH
Confidence 4 67888888888999999999988765543 4456777777777888889999999988888876 5777642111
Q ss_pred ----H---H------HHHhccCCHHHHHHHHHHhHhcCCCCCC-----hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC
Q 007517 334 ----V---L------SACSYTGKVKEGREIFESMKSKYLVEPK-----TEHYACMVDLLGRAGQVEDAMKLIEAM-PFEP 394 (600)
Q Consensus 334 ----l---l------~a~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p 394 (600)
| . ......+.+.++.+-.+...+. .|. ...+..+-..|...|++.+|++...+. .+.|
T Consensus 262 ~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~---ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~ 338 (504)
T KOG0624|consen 262 FYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKN---EPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDP 338 (504)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc---CCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCc
Confidence 1 0 1112234444444444444332 222 122333444555566666666666555 4445
Q ss_pred C-HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC
Q 007517 395 D-AIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKN 429 (600)
Q Consensus 395 ~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 429 (600)
| +.++.--..+|.....++.|+.-|+++.+.+|++
T Consensus 339 ~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn 374 (504)
T KOG0624|consen 339 DDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESN 374 (504)
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCccc
Confidence 4 4455555566666666666666666666666665
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.79 E-value=2.4e-05 Score=79.70 Aligned_cols=402 Identities=14% Similarity=0.147 Sum_probs=190.7
Q ss_pred HHHHHHHhCCChHHHHHHHhhCCCCCcchHHHHHHHHHcCCCHHHHHHHHccC--CCCCcchHHHHHHHHHhcCChHHHH
Q 007517 11 AMVRGYVEEGMITEAGTLFWQMPEKNVVSWTVMLGGFIRDSRIDDARRLFDMM--PEKDVVAQTNMVLGYCQDGRVDEGR 88 (600)
Q Consensus 11 ~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m--~~~~~~~~~~li~~~~~~g~~~~A~ 88 (600)
+.++++...|+-++|-++-. .|-. --+.|+.|.+.|....|.+.-..= ...|......+..++.+..-+++|-
T Consensus 594 sy~q~l~dt~qd~ka~elk~----sdgd-~laaiqlyika~~p~~a~~~a~n~~~l~~de~il~~ia~alik~elydkag 668 (1636)
T KOG3616|consen 594 SYLQALMDTGQDEKAAELKE----SDGD-GLAAIQLYIKAGKPAKAARAALNDEELLADEEILEHIAAALIKGELYDKAG 668 (1636)
T ss_pred HHHHHHHhcCchhhhhhhcc----ccCc-cHHHHHHHHHcCCchHHHHhhcCHHHhhccHHHHHHHHHHHHhhHHHHhhh
Confidence 45666677777777765422 2222 234567788888877776643221 1234444445555555555666666
Q ss_pred HHHhhCCCCCcccHHHHHHHHHhCCChHHHHHHHhhcCCCCcchH-HHHHHHHhcCCChHHHHHHHhhCCCCCccchhHH
Q 007517 89 EIFDEMPKKNVISWTTMISGYVNNNRIDVARKLFEVMPEKNEVSW-TAMLMGYTQCGRIQDAWELFKAMPMKSVVASNSM 167 (600)
Q Consensus 89 ~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~p~~~t~-~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l 167 (600)
.+|+++..++- .+..|-+-.-+-+|+++-+-.-....++. ..-..-+...|+++.|..-|-+.. -.-.-
T Consensus 669 dlfeki~d~dk-----ale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~-----~~~ka 738 (1636)
T KOG3616|consen 669 DLFEKIHDFDK-----ALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEAN-----CLIKA 738 (1636)
T ss_pred hHHHHhhCHHH-----HHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhh-----hHHHH
Confidence 66766655332 22222222223344443222111000110 001111122233333333222111 00011
Q ss_pred HHHHHhcCCHHHHHHHHHhcccCChhh--HHHHHHHHHHcCChHHHHHHHHHHHHcCCccCchhHhhHHHHHhhhcchHH
Q 007517 168 ILGLGQNGEVQKARVVFDQMREKDDAT--WSGMIKVYERKGYELEVIDLFTLMQKEGVRVNFPSLISVLSVCASLASLDH 245 (600)
Q Consensus 168 i~~~~~~g~~~~A~~~f~~~~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~ 245 (600)
|.+.....++.+|+.+++.+.++++.+ |..+..-|+..|+++.|.++|-+. ..+.-.+..|.+.|+++.
T Consensus 739 ieaai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~d 809 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWED 809 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHHH
Confidence 222333344444444444444333222 333344444444444444444321 112233344444444444
Q ss_pred HHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHhhhhhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 007517 246 GRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFASKDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVM 325 (600)
Q Consensus 246 a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 325 (600)
|.++-... .|.......|-+-..-+-+.|++.+|.++|-.+..|+.. |..|-++|..++.+++..+- .
T Consensus 810 a~kla~e~--~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~a-----iqmydk~~~~ddmirlv~k~-----h 877 (1636)
T KOG3616|consen 810 AFKLAEEC--HGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKA-----IQMYDKHGLDDDMIRLVEKH-----H 877 (1636)
T ss_pred HHHHHHHh--cCchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchHH-----HHHHHhhCcchHHHHHHHHh-----C
Confidence 44332222 122233334444444455566777777777666666543 56677777777777666653 2
Q ss_pred CCH--HHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCC----CCHHHH
Q 007517 326 PDD--VTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAMPFE----PDAIIW 399 (600)
Q Consensus 326 p~~--~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----p~~~~~ 399 (600)
|+. .|-..+..-+...|+++.|...|-+.. -|.+-+.+|...+.|++|.++-+.-+-. .-...|
T Consensus 878 ~d~l~dt~~~f~~e~e~~g~lkaae~~flea~----------d~kaavnmyk~s~lw~dayriaktegg~n~~k~v~flw 947 (1636)
T KOG3616|consen 878 GDHLHDTHKHFAKELEAEGDLKAAEEHFLEAG----------DFKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLW 947 (1636)
T ss_pred hhhhhHHHHHHHHHHHhccChhHHHHHHHhhh----------hHHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHH
Confidence 332 244444555566677777766654432 2445666777777777777766544201 012223
Q ss_pred HHHH------HHHHHcCCHHHHHH-------------HHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 007517 400 GSLL------GACRTHMKLDLAEV-------------AAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMRKRN 460 (600)
Q Consensus 400 ~~ll------~~~~~~g~~~~a~~-------------~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 460 (600)
.--+ ..+-++|-.+.|.. +.+-..+ -..+.....++.-+...|++++|.+-+-+..+.+
T Consensus 948 aksiggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k--~k~~~vhlk~a~~ledegk~edaskhyveaikln 1025 (1636)
T KOG3616|consen 948 AKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAK--DKMGEVHLKLAMFLEDEGKFEDASKHYVEAIKLN 1025 (1636)
T ss_pred HHhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhh--ccCccchhHHhhhhhhccchhhhhHhhHHHhhcc
Confidence 2222 22334444444433 3322222 2233566777778888999999987776666543
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.1e-07 Score=91.09 Aligned_cols=246 Identities=10% Similarity=0.061 Sum_probs=159.9
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCccCchhHhhHHHHHhhhcchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHH
Q 007517 200 KVYERKGYELEVIDLFTLMQKEGVRVNFPSLISVLSVCASLASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELV 279 (600)
Q Consensus 200 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~ 279 (600)
+-+.-.|++..++.-.+ ........+..+...+.+++..+|..+.+ ...+.+.. +|.......+...+...++-+
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~v---l~ei~~~~-~~~l~av~~la~y~~~~~~~e 83 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSV---LSEIKKSS-SPELQAVRLLAEYLSSPSDKE 83 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHH---HHHS-TTS-SCCCHHHHHHHHHHCTSTTHH
T ss_pred HHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHH---HHHhccCC-ChhHHHHHHHHHHHhCccchH
Confidence 44555788888886555 22222122334455667777777876543 33443333 555555555544443334555
Q ss_pred HHHhhhhhcCC-C---CHHHHHHH-HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHh
Q 007517 280 KGKLIFDNFAS-K---DIVMWNSI-ISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESM 354 (600)
Q Consensus 280 ~A~~~~~~~~~-~---~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~ 354 (600)
.+..-+++... + +..++..+ ...+...|++++|++++++- .+.......+..+.+.++++.|.+.++.|
T Consensus 84 ~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~ 157 (290)
T PF04733_consen 84 SALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNM 157 (290)
T ss_dssp CHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 55555544332 2 12222222 23456679999999988752 34556666788899999999999999999
Q ss_pred HhcCCCCCChHH---HHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC
Q 007517 355 KSKYLVEPKTEH---YACMVDLLGRAGQVEDAMKLIEAM--PFEPDAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKN 429 (600)
Q Consensus 355 ~~~~~~~p~~~~---~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 429 (600)
.+. ..|... ..+.+..+.-.+.+.+|..+|+++ ...+++.+.+.+..++...|++++|+.+++++++.+|++
T Consensus 158 ~~~---~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~ 234 (290)
T PF04733_consen 158 QQI---DEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPND 234 (290)
T ss_dssp HCC---SCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCH
T ss_pred Hhc---CCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCC
Confidence 753 344322 233333333345799999999999 445788899999999999999999999999999999999
Q ss_pred CchHHHHHHHHHhcCCc-hHHHHHHHHHHhC
Q 007517 430 AGPYILLSNIYASQGRF-HDVAELRKNMRKR 459 (600)
Q Consensus 430 ~~~~~~l~~~~~~~g~~-~~a~~~~~~m~~~ 459 (600)
+.+...++-+....|+. +.+.+++..+++.
T Consensus 235 ~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 235 PDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp HHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 99999999999999998 6677888887753
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.76 E-value=2.7e-06 Score=75.00 Aligned_cols=193 Identities=12% Similarity=0.017 Sum_probs=125.3
Q ss_pred HHHhhhcchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHhhhhhcCC---CCHHHHHHHHHHHHhcCChHH
Q 007517 235 SVCASLASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFAS---KDIVMWNSIISGYAQYGLGEK 311 (600)
Q Consensus 235 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~ 311 (600)
-.+...|+...|+.-++..++.. +.+..++..+...|.+.|+.+.|.+.|++... .+-...|....-+|..|++++
T Consensus 43 l~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~e 121 (250)
T COG3063 43 LGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEE 121 (250)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHH
Confidence 34444455555555555555443 33455566666667777777777777765443 355566666667777778888
Q ss_pred HHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC
Q 007517 312 SLKVFHEMFSSGVMPD-DVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM 390 (600)
Q Consensus 312 A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 390 (600)
|...|++....-.-|. ..||..+.-+..+.|+.+.|..+|++..+. .+..+.....+.+...+.|++-.|..+++..
T Consensus 122 A~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~--dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~ 199 (250)
T COG3063 122 AMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALEL--DPQFPPALLELARLHYKAGDYAPARLYLERY 199 (250)
T ss_pred HHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHh--CcCCChHHHHHHHHHHhcccchHHHHHHHHH
Confidence 8888877776432222 346666666667778888888888777653 1233556667777777888888888777766
Q ss_pred --CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCC
Q 007517 391 --PFEPDAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNA 430 (600)
Q Consensus 391 --~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 430 (600)
...++..+.-..|..-...||.+.+-+.-.++....|..+
T Consensus 200 ~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~ 241 (250)
T COG3063 200 QQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSE 241 (250)
T ss_pred HhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcH
Confidence 2346666666666667777888877777777777777663
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.2e-05 Score=81.13 Aligned_cols=293 Identities=11% Similarity=-0.062 Sum_probs=160.5
Q ss_pred hhHHHHHHHhcCCHHHHHHHHHhccc---CChh---hHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCch-hHhhHHHH
Q 007517 164 SNSMILGLGQNGEVQKARVVFDQMRE---KDDA---TWSGMIKVYERKGYELEVIDLFTLMQKEGVRVNFP-SLISVLSV 236 (600)
Q Consensus 164 ~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~ 236 (600)
+..+...+...|+.+++.+.+..... ++.. ........+...|++++|.+.+++.... .|+.. .+.. ...
T Consensus 9 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~--~P~~~~a~~~-~~~ 85 (355)
T cd05804 9 HAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDD--YPRDLLALKL-HLG 85 (355)
T ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHH-hHH
Confidence 34444555555666555544444331 1111 1222233456677788888877777664 23322 2221 112
Q ss_pred Hhh----hcchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHhhhhhcCC---CCHHHHHHHHHHHHhcCCh
Q 007517 237 CAS----LASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFAS---KDIVMWNSIISGYAQYGLG 309 (600)
Q Consensus 237 ~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~ 309 (600)
+.. .+....+.+.+.. .....+........+...+...|++++|...+++..+ .+...+..+...|...|++
T Consensus 86 ~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~ 164 (355)
T cd05804 86 AFGLGDFSGMRDHVARVLPL-WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRF 164 (355)
T ss_pred HHHhcccccCchhHHHHHhc-cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCH
Confidence 222 2333444443333 1111122233444555677788888888888877654 3556677777888888888
Q ss_pred HHHHHHHHHHHHCCC-CCCHH--HHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHH-H--HHHHHHhhcCCHHHH
Q 007517 310 EKSLKVFHEMFSSGV-MPDDV--TLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHY-A--CMVDLLGRAGQVEDA 383 (600)
Q Consensus 310 ~~A~~~~~~m~~~g~-~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~-~--~li~~~~~~g~~~~A 383 (600)
++|+.++++...... .|+.. .+..+...+...|+.++|..+++.........+..... + .+...+...|..+.+
T Consensus 165 ~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~ 244 (355)
T cd05804 165 KEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVG 244 (355)
T ss_pred HHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChH
Confidence 888888887765421 12221 23456666777888888888888765321111211111 1 233333444433322
Q ss_pred HHH---HHhC-CCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-C---C-----CCchHHHHHHHHHhcCCch
Q 007517 384 MKL---IEAM-PFEP---DAIIWGSLLGACRTHMKLDLAEVAAKKLLQLE-P---K-----NAGPYILLSNIYASQGRFH 447 (600)
Q Consensus 384 ~~~---~~~m-~~~p---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-p---~-----~~~~~~~l~~~~~~~g~~~ 447 (600)
.+. .... +..| ..........++...|+.+.|...++.+.... . . ........+.++...|+++
T Consensus 245 ~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~ 324 (355)
T cd05804 245 DRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYA 324 (355)
T ss_pred HHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHH
Confidence 222 1111 1001 12222345666778889999999888876532 1 1 2344566777888999999
Q ss_pred HHHHHHHHHHhCC
Q 007517 448 DVAELRKNMRKRN 460 (600)
Q Consensus 448 ~a~~~~~~m~~~g 460 (600)
+|.+.+......+
T Consensus 325 ~A~~~L~~al~~a 337 (355)
T cd05804 325 TALELLGPVRDDL 337 (355)
T ss_pred HHHHHHHHHHHHH
Confidence 9999998887654
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=2.3e-05 Score=89.58 Aligned_cols=353 Identities=11% Similarity=0.023 Sum_probs=219.5
Q ss_pred HHHhCCChHHHHHHHhhcCCCCc--chHHHHHHHHhcCCChHHHHHHHhhCC----CCCccchhHHHHHHHhcCCHHHHH
Q 007517 108 GYVNNNRIDVARKLFEVMPEKNE--VSWTAMLMGYTQCGRIQDAWELFKAMP----MKSVVASNSMILGLGQNGEVQKAR 181 (600)
Q Consensus 108 ~~~~~g~~~~A~~~~~~m~~p~~--~t~~~ll~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~ 181 (600)
.+...|++.+|.........++. .............|+++.+...+..+. ..++.........+...|++++|.
T Consensus 350 ~~~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~ 429 (903)
T PRK04841 350 AWLAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVN 429 (903)
T ss_pred HHHHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHH
Confidence 34445555555554444433111 111122233445677887777777664 233444445556667889999998
Q ss_pred HHHHhccc----CC---h-----hhHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCc----hhHhhHHHHHhhhcchHH
Q 007517 182 VVFDQMRE----KD---D-----ATWSGMIKVYERKGYELEVIDLFTLMQKEGVRVNF----PSLISVLSVCASLASLDH 245 (600)
Q Consensus 182 ~~f~~~~~----~~---~-----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~~~~~~~~~~~ 245 (600)
..++.... .+ . .....+...+...|++++|...+++....-...+. .....+...+...|+++.
T Consensus 430 ~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~ 509 (903)
T PRK04841 430 TLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELAR 509 (903)
T ss_pred HHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHH
Confidence 88876532 11 1 11122334566899999999999987763111121 223444455667899999
Q ss_pred HHHHHHHHHHc----CCC-CchhhHHHHHHHHHHcCCHHHHHhhhhhcCC-------C----CHHHHHHHHHHHHhcCCh
Q 007517 246 GRQVHAQLVRC----QFD-VDVYVASVLITMYIKCGELVKGKLIFDNFAS-------K----DIVMWNSIISGYAQYGLG 309 (600)
Q Consensus 246 a~~~~~~~~~~----~~~-~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~g~~ 309 (600)
|...+...... |.. ........+...+...|+++.|...+++... + ....+..+...+...|++
T Consensus 510 A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~ 589 (903)
T PRK04841 510 ALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARL 589 (903)
T ss_pred HHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCH
Confidence 99988887653 211 1123455667788889999999998876432 1 123344555667778999
Q ss_pred HHHHHHHHHHHHCC--CCCC--HHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHH-----HHHHHHHhhcCCH
Q 007517 310 EKSLKVFHEMFSSG--VMPD--DVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHY-----ACMVDLLGRAGQV 380 (600)
Q Consensus 310 ~~A~~~~~~m~~~g--~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~-----~~li~~~~~~g~~ 380 (600)
++|...+++..... ..|. ...+..+.......|+.++|.+.++..............+ ...+..+...|+.
T Consensus 590 ~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 669 (903)
T PRK04841 590 DEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDK 669 (903)
T ss_pred HHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCH
Confidence 99999998875531 1222 2234445556778899999999988875421111111111 1123445668999
Q ss_pred HHHHHHHHhCCC-C-CCH----HHHHHHHHHHHHcCCHHHHHHHHHHHhccC------CCCCchHHHHHHHHHhcCCchH
Q 007517 381 EDAMKLIEAMPF-E-PDA----IIWGSLLGACRTHMKLDLAEVAAKKLLQLE------PKNAGPYILLSNIYASQGRFHD 448 (600)
Q Consensus 381 ~~A~~~~~~m~~-~-p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~ 448 (600)
+.|.+.+..... . ... ..+..+..++...|+.++|...++++.... +....++..++.+|...|+.++
T Consensus 670 ~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~ 749 (903)
T PRK04841 670 EAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSE 749 (903)
T ss_pred HHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHH
Confidence 999999877621 1 111 124456677888999999999999988742 1123457778899999999999
Q ss_pred HHHHHHHHHhCC
Q 007517 449 VAELRKNMRKRN 460 (600)
Q Consensus 449 a~~~~~~m~~~g 460 (600)
|...+.+..+..
T Consensus 750 A~~~L~~Al~la 761 (903)
T PRK04841 750 AQRVLLEALKLA 761 (903)
T ss_pred HHHHHHHHHHHh
Confidence 999999987654
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.1e-05 Score=73.64 Aligned_cols=405 Identities=11% Similarity=0.054 Sum_probs=187.5
Q ss_pred HHHHHHHHHcCCCHHHHHHHHccCCCCCc---chHHHHHHHHHhcCChHHHHHHHhhCCC--CCcccHHH-HHHHHHhCC
Q 007517 40 WTVMLGGFIRDSRIDDARRLFDMMPEKDV---VAQTNMVLGYCQDGRVDEGREIFDEMPK--KNVISWTT-MISGYVNNN 113 (600)
Q Consensus 40 ~~~ll~~~~~~g~~~~A~~~~~~m~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~-li~~~~~~g 113 (600)
+.+.+..+.+..++.+|++++..-.++++ ...+.|...|-...++..|-.-++++.. |...-|.. -...+.+.+
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~ 92 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKAC 92 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhc
Confidence 34444445555666666666554443332 2233444555555566666665555443 22222211 123344555
Q ss_pred ChHHHHHHHhhcCC-CCcchHHHHHHH--HhcCCChHHHHHHHhhCC-CCCccchhHHHHHHHhcCCHHHHHHHHHhccc
Q 007517 114 RIDVARKLFEVMPE-KNEVSWTAMLMG--YTQCGRIQDAWELFKAMP-MKSVVASNSMILGLGQNGEVQKARVVFDQMRE 189 (600)
Q Consensus 114 ~~~~A~~~~~~m~~-p~~~t~~~ll~~--~~~~g~~~~a~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~ 189 (600)
.+..|+.+...|.. |+...-..-+.+ .-..+++..++.+.++.. +.+..+.+...-...+.|+.+.|.+-|+...+
T Consensus 93 i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlq 172 (459)
T KOG4340|consen 93 IYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQ 172 (459)
T ss_pred ccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHh
Confidence 56666666655554 222211111111 123455555555555554 33333333333344455555555555555443
Q ss_pred C----ChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCchhHhhHHHHHhhhcchHHHHHHHHHHHHcCCCCchhhH
Q 007517 190 K----DDATWSGMIKVYERKGYELEVIDLFTLMQKEGVRVNFPSLISVLSVCASLASLDHGRQVHAQLVRCQFDVDVYVA 265 (600)
Q Consensus 190 ~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 265 (600)
- ....||.-+ +..+.|++..|+++..+..+.|++-.+..=..+..--.....+..-..++... -+..+
T Consensus 173 vsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sa-------l~eAf 244 (459)
T KOG4340|consen 173 VSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSA-------LVEAF 244 (459)
T ss_pred hcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHH-------HHHHh
Confidence 1 233444333 23344555555555555555554321110000000000000000000000000 01223
Q ss_pred HHHHHHHHHcCCHHHHHhhhhhcCCC-----CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 007517 266 SVLITMYIKCGELVKGKLIFDNFASK-----DIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSY 340 (600)
Q Consensus 266 ~~li~~y~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 340 (600)
|.-...+.+.|+.+.|.+.+..|+.+ |++|...+.-.= ..+++.+..+-+.-+.+.+ +-...||..++-.|++
T Consensus 245 NLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~n-PfP~ETFANlLllyCK 322 (459)
T KOG4340|consen 245 NLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQN-PFPPETFANLLLLYCK 322 (459)
T ss_pred hhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcC-CCChHHHHHHHHHHhh
Confidence 33344567889999999999999864 666665543222 2344445555455455443 2345689999999999
Q ss_pred cCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhh-cCCHHHHHHHHHhCCCCCCHHHHHHHHHH-HHHcCCHHHH---
Q 007517 341 TGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGR-AGQVEDAMKLIEAMPFEPDAIIWGSLLGA-CRTHMKLDLA--- 415 (600)
Q Consensus 341 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~p~~~~~~~ll~~-~~~~g~~~~a--- 415 (600)
..-++.|-.++.+-....---.+...|+ |++++.- .-..++|.+-++.+.-.-....-..-+.. -.++.+-+.+
T Consensus 323 Neyf~lAADvLAEn~~lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La~~l~~kLRklAi~vQe~r~~~dd~a~R~ 401 (459)
T KOG4340|consen 323 NEYFDLAADVLAENAHLTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLAGMLTEKLRKLAIQVQEARHNRDDEAIRK 401 (459)
T ss_pred hHHHhHHHHHHhhCcchhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 9888888888754321100011233343 3444433 34567776665544100000000001111 1112222222
Q ss_pred -HHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007517 416 -EVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMRK 458 (600)
Q Consensus 416 -~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 458 (600)
..-+++.+++-- .....-++.|.+..++..+.++|..-.+
T Consensus 402 ai~~Yd~~LE~YL---PVlMa~AkiyW~~~Dy~~vEk~Fr~Sve 442 (459)
T KOG4340|consen 402 AVNEYDETLEKYL---PVLMAQAKIYWNLEDYPMVEKIFRKSVE 442 (459)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHhhccccccHHHHHHHHHHHh
Confidence 222333333211 2344567778888999999999887654
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.70 E-value=7.7e-05 Score=75.47 Aligned_cols=377 Identities=14% Similarity=0.139 Sum_probs=193.3
Q ss_pred chHHHHHHHHHcCCCHHHHHHHHccCC---CCCcchHHHHHHHHHhcCChHHHHHHHhhCCC---CCcccHHHHHHHHHh
Q 007517 38 VSWTVMLGGFIRDSRIDDARRLFDMMP---EKDVVAQTNMVLGYCQDGRVDEGREIFDEMPK---KNVISWTTMISGYVN 111 (600)
Q Consensus 38 ~~~~~ll~~~~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~ 111 (600)
+.|..+.-.+-...++++|.+.|.... +.|...|.-|.-.=++.|+++.....-....+ .....|..+.-++.-
T Consensus 76 vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L 155 (700)
T KOG1156|consen 76 VCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHL 155 (700)
T ss_pred hhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 334444333334444555555544433 22333343333333333333333322222211 233456666666666
Q ss_pred CCChHHHHHHHhhcCC-----CCcchHHHHH------HHHhcCCChHHHHHHHhhCC---CCCccchhHHHHHHHhcCCH
Q 007517 112 NNRIDVARKLFEVMPE-----KNEVSWTAML------MGYTQCGRIQDAWELFKAMP---MKSVVASNSMILGLGQNGEV 177 (600)
Q Consensus 112 ~g~~~~A~~~~~~m~~-----p~~~t~~~ll------~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~ 177 (600)
.|+...|..+++...+ |+...+.... ......|.++.|.+.+.... ......--.-.+.+.+.+++
T Consensus 156 ~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~l 235 (700)
T KOG1156|consen 156 LGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQL 235 (700)
T ss_pred HHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhH
Confidence 6777777777666554 4444333222 22345566666666555444 11112222345566777777
Q ss_pred HHHHHHHHhcccC--ChhhHHHHH-HHHHHcCChHHHH-HHHHHHHHcCCccCchh-HhhHHHHHhhhcchHHHHHHHHH
Q 007517 178 QKARVVFDQMREK--DDATWSGMI-KVYERKGYELEVI-DLFTLMQKEGVRVNFPS-LISVLSVCASLASLDHGRQVHAQ 252 (600)
Q Consensus 178 ~~A~~~f~~~~~~--~~~~~~~li-~~~~~~g~~~~A~-~~~~~m~~~g~~p~~~t-~~~ll~~~~~~~~~~~a~~~~~~ 252 (600)
++|..++..+..+ |..-|+... .++.+-.+.-+++ .+|....+. .|-... -..=++......-.+....++..
T Consensus 236 EeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~--y~r~e~p~Rlplsvl~~eel~~~vdkyL~~ 313 (700)
T KOG1156|consen 236 EEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEK--YPRHECPRRLPLSVLNGEELKEIVDKYLRP 313 (700)
T ss_pred HhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc--CcccccchhccHHHhCcchhHHHHHHHHHH
Confidence 7777777777654 333333333 3332233333333 445444332 111100 00011111112223334455566
Q ss_pred HHHcCCCCchhhHHHHHHHHHHcCCHHH----HHhhhhhc--------------CCCCHHHHH--HHHHHHHhcCChHHH
Q 007517 253 LVRCQFDVDVYVASVLITMYIKCGELVK----GKLIFDNF--------------ASKDIVMWN--SIISGYAQYGLGEKS 312 (600)
Q Consensus 253 ~~~~~~~~~~~~~~~li~~y~~~g~~~~----A~~~~~~~--------------~~~~~~~~~--~li~~~~~~g~~~~A 312 (600)
..+.|+++ ++..+...|-.-...+- +..+...+ ..|....|+ -++..|-..|+++.|
T Consensus 314 ~l~Kg~p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A 390 (700)
T KOG1156|consen 314 LLSKGVPS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVA 390 (700)
T ss_pred HhhcCCCc---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHH
Confidence 66666553 23333333322111110 11111111 123444454 467788899999999
Q ss_pred HHHHHHHHHCCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCC
Q 007517 313 LKVFHEMFSSGVMPDDV-TLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAMP 391 (600)
Q Consensus 313 ~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 391 (600)
..+.+..... .|+.+ -|..=.+.+.+.|++++|..++++..+- -.||...-+--+.-..|+.+.++|.++.....
T Consensus 391 ~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~el--D~aDR~INsKcAKYmLrAn~i~eA~~~~skFT 466 (700)
T KOG1156|consen 391 LEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQEL--DTADRAINSKCAKYMLRANEIEEAEEVLSKFT 466 (700)
T ss_pred HHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhc--cchhHHHHHHHHHHHHHccccHHHHHHHHHhh
Confidence 9999998864 77766 3444457788999999999999988763 24565555566777789999999999877661
Q ss_pred CCC-C--------HHHHHHHH--HHHHHcCCHHHHHHHHHHHh
Q 007517 392 FEP-D--------AIIWGSLL--GACRTHMKLDLAEVAAKKLL 423 (600)
Q Consensus 392 ~~p-~--------~~~~~~ll--~~~~~~g~~~~a~~~~~~~~ 423 (600)
-.. + .-.|-.+- .+|.+.|++.+|++-|..+.
T Consensus 467 r~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~ 509 (700)
T KOG1156|consen 467 REGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIE 509 (700)
T ss_pred hcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHH
Confidence 011 1 22355443 45777888888876654443
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.70 E-value=8.6e-05 Score=74.34 Aligned_cols=406 Identities=9% Similarity=0.061 Sum_probs=244.9
Q ss_pred HHHHHcCCCHHHHHHHHccCC---CCCcchHHHHHHHHHhcCChHHHHHHHhhCCCCCcccHHHH--HHH--HHhCCChH
Q 007517 44 LGGFIRDSRIDDARRLFDMMP---EKDVVAQTNMVLGYCQDGRVDEGREIFDEMPKKNVISWTTM--ISG--YVNNNRID 116 (600)
Q Consensus 44 l~~~~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~l--i~~--~~~~g~~~ 116 (600)
++.+.+.|++++|.+...++. +.|...+..=+-+..+.+.+++|..+.+.-..- .+++.. =.+ +.+.+..+
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Yrlnk~D 96 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEYRLNKLD 96 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHHHcccHH
Confidence 466778899999999888877 346667777788889999999999877654321 222222 334 45789999
Q ss_pred HHHHHHhhcCCCCcchHHHHHHHHhcCCChHHHHHHHhhCCCCCccchhHHHHH-HHhcCCHHHHHHHHHhcccCChhhH
Q 007517 117 VARKLFEVMPEKNEVSWTAMLMGYTQCGRIQDAWELFKAMPMKSVVASNSMILG-LGQNGEVQKARVVFDQMREKDDATW 195 (600)
Q Consensus 117 ~A~~~~~~m~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~-~~~~g~~~~A~~~f~~~~~~~~~~~ 195 (600)
+|+..+.-....|..+...-...|-+.|++++|..+|+.+...+..-+...+.+ +...+....+. +.+..+.....+|
T Consensus 97 ealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~-~~q~v~~v~e~sy 175 (652)
T KOG2376|consen 97 EALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQ-LLQSVPEVPEDSY 175 (652)
T ss_pred HHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHH-HHHhccCCCcchH
Confidence 999999955555555777777889999999999999999974444333333221 11111111221 3455554333344
Q ss_pred HH---HHHHHHHcCChHHHHHHHHHHHHcCC-------------ccCchh-HhhHHHHHhhhcchHHHHHHHHHHHHcCC
Q 007517 196 SG---MIKVYERKGYELEVIDLFTLMQKEGV-------------RVNFPS-LISVLSVCASLASLDHGRQVHAQLVRCQF 258 (600)
Q Consensus 196 ~~---li~~~~~~g~~~~A~~~~~~m~~~g~-------------~p~~~t-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 258 (600)
.. ....+...|++.+|+++++...+.+. .-+..+ -..+.-++-..|+.++|..++..+++...
T Consensus 176 el~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~ 255 (652)
T KOG2376|consen 176 ELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNP 255 (652)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcC
Confidence 33 34567889999999999998833211 001111 12233455678999999999999998874
Q ss_pred CCch---hhHHHHHHHHHHcCCHH-HHHhhhhhcCCCCH--------------HHH-HHHHHHHHhcCChHHHHHHHHHH
Q 007517 259 DVDV---YVASVLITMYIKCGELV-KGKLIFDNFASKDI--------------VMW-NSIISGYAQYGLGEKSLKVFHEM 319 (600)
Q Consensus 259 ~~~~---~~~~~li~~y~~~g~~~-~A~~~~~~~~~~~~--------------~~~-~~li~~~~~~g~~~~A~~~~~~m 319 (600)
...+ ...|.|+.+-....-.+ .++..|+....... +.. +.++..|. +..+.+.++-...
T Consensus 256 ~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~t--nk~~q~r~~~a~l 333 (652)
T KOG2376|consen 256 ADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFT--NKMDQVRELSASL 333 (652)
T ss_pred CCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhHHHHHHHHHhC
Confidence 3221 22333433221111111 23333333322221 112 22233332 2223444433332
Q ss_pred HHCCCCCCHHHHHHHHHHHhcc--CCHHHHHHHHHHhHhcCCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHH--------
Q 007517 320 FSSGVMPDDVTLVGVLSACSYT--GKVKEGREIFESMKSKYLVEPK-TEHYACMVDLLGRAGQVEDAMKLIE-------- 388 (600)
Q Consensus 320 ~~~g~~p~~~t~~~ll~a~~~~--g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~-------- 388 (600)
. +..|. ..+..++..+... .....+.+++....+.+ +-. ..+.-.++......|+++.|.+++.
T Consensus 334 p--~~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~--p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~s 408 (652)
T KOG2376|consen 334 P--GMSPE-SLFPILLQEATKVREKKHKKAIELLLQFADGH--PEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKS 408 (652)
T ss_pred C--ccCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhccC--CchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhh
Confidence 1 22343 3444555544322 24667777777766542 222 5566678888999999999999998
Q ss_pred hC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc----cCCCC---CchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007517 389 AM-PFEPDAIIWGSLLGACRTHMKLDLAEVAAKKLLQ----LEPKN---AGPYILLSNIYASQGRFHDVAELRKNMRKR 459 (600)
Q Consensus 389 ~m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~----~~p~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 459 (600)
.. .+.-.+.+..++..-+.+.++.+.|..++..++. ..+.. -.++..++..-.+.|+-++|..+++++.+.
T Consensus 409 s~~~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~ 487 (652)
T KOG2376|consen 409 SILEAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKF 487 (652)
T ss_pred hhhhhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHh
Confidence 44 2333456666777778888888888888877765 22222 223444555556779999999999999873
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=98.70 E-value=3.6e-06 Score=86.72 Aligned_cols=123 Identities=14% Similarity=0.090 Sum_probs=62.7
Q ss_pred HHHHHHHHHcCCHHHHHhhhhhcCC--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 007517 266 SVLITMYIKCGELVKGKLIFDNFAS--K-DIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTG 342 (600)
Q Consensus 266 ~~li~~y~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g 342 (600)
.-+...|-..|++++|.++.+...+ | .+..|..-...|-..|++.+|.+.++..+... .-|...-+-....+.+.|
T Consensus 198 ~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~ 276 (517)
T PF12569_consen 198 YFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAG 276 (517)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCC
Confidence 3445555556666666666665443 2 23445555555666666666666666655432 122333333444555566
Q ss_pred CHHHHHHHHHHhHhcCCCCCChH------H--HHHHHHHHhhcCCHHHHHHHHHhC
Q 007517 343 KVKEGREIFESMKSKYLVEPKTE------H--YACMVDLLGRAGQVEDAMKLIEAM 390 (600)
Q Consensus 343 ~~~~a~~~~~~~~~~~~~~p~~~------~--~~~li~~~~~~g~~~~A~~~~~~m 390 (600)
++++|.+++....+. +..|... . ......+|.|.|++..|++.|..+
T Consensus 277 ~~e~A~~~~~~Ftr~-~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v 331 (517)
T PF12569_consen 277 RIEEAEKTASLFTRE-DVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAV 331 (517)
T ss_pred CHHHHHHHHHhhcCC-CCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 666666666555443 2122111 1 133456666666666666655443
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.5e-05 Score=78.73 Aligned_cols=215 Identities=13% Similarity=0.127 Sum_probs=146.4
Q ss_pred hhHHHHHhhhcchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHhhhhhcCCCCH---H-------HHHHHH
Q 007517 231 ISVLSVCASLASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFASKDI---V-------MWNSII 300 (600)
Q Consensus 231 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~---~-------~~~~li 300 (600)
..+.++.-+..+++.+.+-+...+... .+..-++....+|...|........-+...+..- . +...+.
T Consensus 228 k~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g 305 (539)
T KOG0548|consen 228 KELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLG 305 (539)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhh
Confidence 345555666667777777777777765 6666777778888888887777666655444221 1 122234
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCCh-HHHHHHHHHHhhcCC
Q 007517 301 SGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKT-EHYACMVDLLGRAGQ 379 (600)
Q Consensus 301 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~ 379 (600)
.+|...++++.|+..|.+....-..||..+ +....+++....+...- +.|.. .--..-..-+.+.|+
T Consensus 306 ~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls---------~lk~~Ek~~k~~e~~a~---~~pe~A~e~r~kGne~Fk~gd 373 (539)
T KOG0548|consen 306 NAYTKREDYEGAIKYYQKALTEHRTPDLLS---------KLKEAEKALKEAERKAY---INPEKAEEEREKGNEAFKKGD 373 (539)
T ss_pred hhhhhHHhHHHHHHHHHHHhhhhcCHHHHH---------HHHHHHHHHHHHHHHHh---hChhHHHHHHHHHHHHHhccC
Confidence 466677888888888888766544444322 12233444433333221 23332 111222566778899
Q ss_pred HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHHH
Q 007517 380 VEDAMKLIEAM-PFEP-DAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMR 457 (600)
Q Consensus 380 ~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 457 (600)
+..|.+.+.++ ...| |...|....-+|.+.|++..|+.-.+..++++|+....|..=+-++....+|++|.+.|++-.
T Consensus 374 y~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eal 453 (539)
T KOG0548|consen 374 YPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEAL 453 (539)
T ss_pred HHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999887 3345 577888888889999999999999999999999988888888888888899999998888766
Q ss_pred hC
Q 007517 458 KR 459 (600)
Q Consensus 458 ~~ 459 (600)
+.
T Consensus 454 e~ 455 (539)
T KOG0548|consen 454 EL 455 (539)
T ss_pred hc
Confidence 54
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.68 E-value=9.5e-05 Score=78.17 Aligned_cols=240 Identities=16% Similarity=0.227 Sum_probs=160.6
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCc-hhHhhHHHHHhhhcchHHHHHHHHHHHHcC------------
Q 007517 191 DDATWSGMIKVYERKGYELEVIDLFTLMQKEGVRVNF-PSLISVLSVCASLASLDHGRQVHAQLVRCQ------------ 257 (600)
Q Consensus 191 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~------------ 257 (600)
|+..-..-+.++...+-+.+-++++++..-..-..+. ..+-.++-.-+-..+.....++.+++-...
T Consensus 983 dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyDa~~ia~iai~~~ 1062 (1666)
T KOG0985|consen 983 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIAEIAIENQ 1062 (1666)
T ss_pred ChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCCchhHHHHHhhhh
Confidence 6666777788899999999999999887643211111 111112111111222222223222222111
Q ss_pred -----------CCCchhhHHHHHHHHHHcCCHHHHHhhhhhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 007517 258 -----------FDVDVYVASVLITMYIKCGELVKGKLIFDNFASKDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMP 326 (600)
Q Consensus 258 -----------~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 326 (600)
+..+....+.||+ .-+.++.|.+.-++.. ....|..+..+-.+.|...+|++-|-+ ..
T Consensus 1063 LyEEAF~ifkkf~~n~~A~~VLie---~i~~ldRA~efAe~~n--~p~vWsqlakAQL~~~~v~dAieSyik------ad 1131 (1666)
T KOG0985|consen 1063 LYEEAFAIFKKFDMNVSAIQVLIE---NIGSLDRAYEFAERCN--EPAVWSQLAKAQLQGGLVKDAIESYIK------AD 1131 (1666)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHH---HhhhHHHHHHHHHhhC--ChHHHHHHHHHHHhcCchHHHHHHHHh------cC
Confidence 1112222222222 2344444444444443 345799999999999999999988765 34
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 007517 327 DDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAMPFEPDAIIWGSLLGAC 406 (600)
Q Consensus 327 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~ 406 (600)
|...|..++.++++.|.+++-.+++...+++ .-+|.+ -+.|+-+|++.+++.+-++++. -||..-...+.+-|
T Consensus 1132 Dps~y~eVi~~a~~~~~~edLv~yL~MaRkk-~~E~~i--d~eLi~AyAkt~rl~elE~fi~----gpN~A~i~~vGdrc 1204 (1666)
T KOG0985|consen 1132 DPSNYLEVIDVASRTGKYEDLVKYLLMARKK-VREPYI--DSELIFAYAKTNRLTELEEFIA----GPNVANIQQVGDRC 1204 (1666)
T ss_pred CcHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-hcCccc--hHHHHHHHHHhchHHHHHHHhc----CCCchhHHHHhHHH
Confidence 6678999999999999999999999877765 335554 4579999999999999888775 48888888899999
Q ss_pred HHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHH
Q 007517 407 RTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNM 456 (600)
Q Consensus 407 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 456 (600)
...|.++.|.-++... ..|..|+..+...|.+..|...-++.
T Consensus 1205 f~~~~y~aAkl~y~~v--------SN~a~La~TLV~LgeyQ~AVD~aRKA 1246 (1666)
T KOG0985|consen 1205 FEEKMYEAAKLLYSNV--------SNFAKLASTLVYLGEYQGAVDAARKA 1246 (1666)
T ss_pred hhhhhhHHHHHHHHHh--------hhHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 9999999998888744 67888888888888888777554433
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.67 E-value=3.4e-05 Score=79.72 Aligned_cols=364 Identities=15% Similarity=0.121 Sum_probs=217.7
Q ss_pred cchHHHHHHHHHhCCChHHHHHHHhhCC------------CCCcchHHHHHHHHHcCCCHHHHHHHHccCCCCCcchHHH
Q 007517 6 VVSWTAMVRGYVEEGMITEAGTLFWQMP------------EKNVVSWTVMLGGFIRDSRIDDARRLFDMMPEKDVVAQTN 73 (600)
Q Consensus 6 ~~~~~~ll~~~~~~g~~~~A~~~~~~m~------------~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 73 (600)
-..|..+.+.|.+.++++-|.-.+..|. +.+..+-..+.-.-...|.+++|..+|.+-.. |..
T Consensus 757 ~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvLAieLgMlEeA~~lYr~ckR-----~DL 831 (1416)
T KOG3617|consen 757 DSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVLAIELGMLEEALILYRQCKR-----YDL 831 (1416)
T ss_pred hHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHHHHHHhhHHHHHHHHHHHHH-----HHH
Confidence 3569999999999999998888888776 11213333333344567889999998887653 334
Q ss_pred HHHHHHhcCChHHHHHHHhhCCCC-CcccHHHHHHHHHhCCChHHHHHHHhhcCC-----------------------CC
Q 007517 74 MVLGYCQDGRVDEGREIFDEMPKK-NVISWTTMISGYVNNNRIDVARKLFEVMPE-----------------------KN 129 (600)
Q Consensus 74 li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----------------------p~ 129 (600)
|=..|-..|.+++|.++-+.-.+- =..||-.-..-+-..++.+.|++.|++... .|
T Consensus 832 lNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d 911 (1416)
T KOG3617|consen 832 LNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRD 911 (1416)
T ss_pred HHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccc
Confidence 556677788888888876543221 112444444445556777777777765533 23
Q ss_pred cchHHHHHHHHhcCCChHHHHHHHhhCCCCCccchhHHHHHHHhcCCHHHHHHHHHhcccCChhhHHHHHHHHHHcCChH
Q 007517 130 EVSWTAMLMGYTQCGRIQDAWELFKAMPMKSVVASNSMILGLGQNGEVQKARVVFDQMREKDDATWSGMIKVYERKGYEL 209 (600)
Q Consensus 130 ~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~ 209 (600)
...|.--..-+-..|+.+.|..+|..+. -|-+++...+-.|+.++|-++-++- .|....-.+.+.|-..|++.
T Consensus 912 ~~L~~WWgqYlES~GemdaAl~~Y~~A~-----D~fs~VrI~C~qGk~~kAa~iA~es--gd~AAcYhlaR~YEn~g~v~ 984 (1416)
T KOG3617|consen 912 ESLYSWWGQYLESVGEMDAALSFYSSAK-----DYFSMVRIKCIQGKTDKAARIAEES--GDKAACYHLARMYENDGDVV 984 (1416)
T ss_pred hHHHHHHHHHHhcccchHHHHHHHHHhh-----hhhhheeeEeeccCchHHHHHHHhc--ccHHHHHHHHHHhhhhHHHH
Confidence 3344444444556677777777776553 2445566666677777777776653 35556666788888889999
Q ss_pred HHHHHHHHHHHcCCccCchhHhhHHHHHhhhc---------------chHHHHHHHHHHHHcCCCCchhhHHHHHHHHHH
Q 007517 210 EVIDLFTLMQKEGVRVNFPSLISVLSVCASLA---------------SLDHGRQVHAQLVRCQFDVDVYVASVLITMYIK 274 (600)
Q Consensus 210 ~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~---------------~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~ 274 (600)
+|..+|.+.+. |...|+.|-..+ +.-.|-.+|++ .|. -....+..|-|
T Consensus 985 ~Av~FfTrAqa---------fsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe---~g~-----~~~~AVmLYHk 1047 (1416)
T KOG3617|consen 985 KAVKFFTRAQA---------FSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEE---LGG-----YAHKAVMLYHK 1047 (1416)
T ss_pred HHHHHHHHHHH---------HHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHH---cch-----hhhHHHHHHHh
Confidence 99988877643 344444332222 22222222222 221 12234556778
Q ss_pred cCCHHHHHhhhhhcC--------------CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 007517 275 CGELVKGKLIFDNFA--------------SKDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSY 340 (600)
Q Consensus 275 ~g~~~~A~~~~~~~~--------------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 340 (600)
.|.+.+|+++--+-. ..|+...+--..-|..+.++++|..++-..++ |...+..|..
T Consensus 1048 AGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~---------~~~AlqlC~~ 1118 (1416)
T KOG3617|consen 1048 AGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLARE---------FSGALQLCKN 1118 (1416)
T ss_pred hcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHH---------HHHHHHHHhc
Confidence 888877766532211 13666666667778888888888888776553 4445555544
Q ss_pred cCCHHHHHHHHHHhHhcCCCCCC----hHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHH
Q 007517 341 TGKVKEGREIFESMKSKYLVEPK----TEHYACMVDLLGRAGQVEDAMKLIEAMPFEPDAIIWGSLLGACRTHMKLDL 414 (600)
Q Consensus 341 ~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~ 414 (600)
. ++.-..++-+.|.-...-.|+ ......+.+.+.++|.+..|-+-|.+.+-+ . .-+.++.+.||.++
T Consensus 1119 ~-nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQAGdK--l----~AMraLLKSGdt~K 1189 (1416)
T KOG3617|consen 1119 R-NVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQAGDK--L----SAMRALLKSGDTQK 1189 (1416)
T ss_pred C-CCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhhhhH--H----HHHHHHHhcCCcce
Confidence 3 333334444444221111222 345667778888899988888888877522 1 22445556666543
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.65 E-value=4.8e-05 Score=78.66 Aligned_cols=389 Identities=13% Similarity=0.153 Sum_probs=216.0
Q ss_pred HHhCCChHHHHHHHhhCCCCCcchHHHHHHHHHcCCCHHHHHHHHccCCC------------CCcchHHHHHHHHHhcCC
Q 007517 16 YVEEGMITEAGTLFWQMPEKNVVSWTVMLGGFIRDSRIDDARRLFDMMPE------------KDVVAQTNMVLGYCQDGR 83 (600)
Q Consensus 16 ~~~~g~~~~A~~~~~~m~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~------------~~~~~~~~li~~~~~~g~ 83 (600)
|..-|+.+.|.+-.+.+. +..+|..+.++|.+..+++-|.-.+..|.. .+...-......-...|.
T Consensus 738 yvtiG~MD~AfksI~~Ik--S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvLAieLgM 815 (1416)
T KOG3617|consen 738 YVTIGSMDAAFKSIQFIK--SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVLAIELGM 815 (1416)
T ss_pred EEEeccHHHHHHHHHHHh--hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHHHHHHhh
Confidence 455677777777666654 446688888888888888887777777651 111222223333456678
Q ss_pred hHHHHHHHhhCCCCCcccHHHHHHHHHhCCChHHHHHHHhhcCC-CCcchHHHHHHHHhcCCChHHHHHHHhhCCCCCcc
Q 007517 84 VDEGREIFDEMPKKNVISWTTMISGYVNNNRIDVARKLFEVMPE-KNEVSWTAMLMGYTQCGRIQDAWELFKAMPMKSVV 162 (600)
Q Consensus 84 ~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 162 (600)
+++|..+|.+.++ |..|=+.|-..|.+++|+++-+.=.+ -=..||..-..-+-..+|.+.|.+.|++...+-..
T Consensus 816 lEeA~~lYr~ckR-----~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafe 890 (1416)
T KOG3617|consen 816 LEEALILYRQCKR-----YDLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFE 890 (1416)
T ss_pred HHHHHHHHHHHHH-----HHHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHH
Confidence 8888888877665 44455666777888888877654333 22346666666666677888888888776532222
Q ss_pred chhHHHHHHHhcCCHHHHHHHHHhcccCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCchhHhhHHHHHhhhcc
Q 007517 163 ASNSMILGLGQNGEVQKARVVFDQMREKDDATWSGMIKVYERKGYELEVIDLFTLMQKEGVRVNFPSLISVLSVCASLAS 242 (600)
Q Consensus 163 ~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 242 (600)
+...|. .+........+++.++ ..|.-...-.-..|+.+.|+.+|..... |-++....+-+|+
T Consensus 891 v~rmL~------e~p~~~e~Yv~~~~d~--~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk 953 (1416)
T KOG3617|consen 891 VFRMLK------EYPKQIEQYVRRKRDE--SLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGK 953 (1416)
T ss_pred HHHHHH------hChHHHHHHHHhccch--HHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeeccC
Confidence 222221 1223333344444444 4444445555667899999998887654 4455666777888
Q ss_pred hHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHhhhhhcCCCCHHHHHHHHHHHHhcC---------------
Q 007517 243 LDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFASKDIVMWNSIISGYAQYG--------------- 307 (600)
Q Consensus 243 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g--------------- 307 (600)
.++|-++-++- -|....-.|..+|-..|++.+|...|.+... +..-|..+-.++
T Consensus 954 ~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa-----fsnAIRlcKEnd~~d~L~nlal~s~~~ 1022 (1416)
T KOG3617|consen 954 TDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRAQA-----FSNAIRLCKENDMKDRLANLALMSGGS 1022 (1416)
T ss_pred chHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH-----HHHHHHHHHhcCHHHHHHHHHhhcCch
Confidence 88888776542 3566777788999999999999998876542 222222222111
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHH---------HHHhHhcCCCCCChHHHHHHHHHHhhcC
Q 007517 308 LGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREI---------FESMKSKYLVEPKTEHYACMVDLLGRAG 378 (600)
Q Consensus 308 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~---------~~~~~~~~~~~p~~~~~~~li~~~~~~g 378 (600)
+.-.|-++|++. |.. +...+..|-++|.+.+|.++ ++-+.++..-..|+...+--.+.+....
T Consensus 1023 d~v~aArYyEe~---g~~-----~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~ 1094 (1416)
T KOG3617|consen 1023 DLVSAARYYEEL---GGY-----AHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQ 1094 (1416)
T ss_pred hHHHHHHHHHHc---chh-----hhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHH
Confidence 122233333321 111 11122234455555555433 2223333222345666666666666666
Q ss_pred CHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc---CCCC---CchHHHHHHHHHhcCCchHHHHH
Q 007517 379 QVEDAMKLIEAMPFEPDAIIWGSLLGACRTHMKLDLAEVAAKKLLQL---EPKN---AGPYILLSNIYASQGRFHDVAEL 452 (600)
Q Consensus 379 ~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~p~~---~~~~~~l~~~~~~~g~~~~a~~~ 452 (600)
++++|..++-... -|.--+..| ...+..--+++.++|.-- .|+. ......++..|.++|.+..|.+-
T Consensus 1095 qyekAV~lL~~ar------~~~~AlqlC-~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKK 1167 (1416)
T KOG3617|consen 1095 QYEKAVNLLCLAR------EFSGALQLC-KNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKK 1167 (1416)
T ss_pred HHHHHHHHHHHHH------HHHHHHHHH-hcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHH
Confidence 6666666654331 112222222 222333334444443321 1211 12355677777777777766654
Q ss_pred HH
Q 007517 453 RK 454 (600)
Q Consensus 453 ~~ 454 (600)
|.
T Consensus 1168 fT 1169 (1416)
T KOG3617|consen 1168 FT 1169 (1416)
T ss_pred Hh
Confidence 43
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.64 E-value=9.2e-06 Score=85.59 Aligned_cols=174 Identities=9% Similarity=0.016 Sum_probs=116.3
Q ss_pred HHHHhhhhhcC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhH
Q 007517 279 VKGKLIFDNFA---SKDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMK 355 (600)
Q Consensus 279 ~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 355 (600)
+.|...+.... ..+...||+|.-. ...|++.-|...|-+-... -+-+..+|..+--.|....+++.|...|...+
T Consensus 800 ~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~s-ep~~~~~W~NlgvL~l~n~d~E~A~~af~~~q 877 (1238)
T KOG1127|consen 800 CTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFS-EPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQ 877 (1238)
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhc-cccchhheeccceeEEecccHHHhhHHHHhhh
Confidence 35566665543 3677888887665 6667777777777665543 23445677777777888889999999998876
Q ss_pred hcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHHcCCHHHHHH----------H
Q 007517 356 SKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM-------PFEPDAIIWGSLLGACRTHMKLDLAEV----------A 418 (600)
Q Consensus 356 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~~~~~~~ll~~~~~~g~~~~a~~----------~ 418 (600)
.- -+.+...|--..-.....|+.-++..+|..- +--|+..-|..-..-....|+.++-.. .
T Consensus 878 SL--dP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~a 955 (1238)
T KOG1127|consen 878 SL--DPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLA 955 (1238)
T ss_pred hc--CchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHH
Confidence 52 2334555655555556778888888887652 223555556555555556666554433 3
Q ss_pred HHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHH
Q 007517 419 AKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNM 456 (600)
Q Consensus 419 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 456 (600)
.++.+...|+...+|...+....+.+.+++|.+...+.
T Consensus 956 l~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~Rl 993 (1238)
T KOG1127|consen 956 LSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRL 993 (1238)
T ss_pred HHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 44555568888888888888888888888888776655
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.60 E-value=7e-05 Score=75.75 Aligned_cols=415 Identities=12% Similarity=0.066 Sum_probs=214.7
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHccCCCCCcc---hHHHHHHHHHhcCChHHHHHHHhhCCC---CCcccHHHHHHHHHhC
Q 007517 39 SWTVMLGGFIRDSRIDDARRLFDMMPEKDVV---AQTNMVLGYCQDGRVDEGREIFDEMPK---KNVISWTTMISGYVNN 112 (600)
Q Consensus 39 ~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~ 112 (600)
.|-..+..| ..+++....++.+.+.++.+. +.....-.+...|+.++|......-.+ ++.+.|..+.-.+-..
T Consensus 10 lF~~~lk~y-E~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~d 88 (700)
T KOG1156|consen 10 LFRRALKCY-ETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSD 88 (700)
T ss_pred HHHHHHHHH-HHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhh
Confidence 344455544 334555555555555432221 111122234456788888887776655 3556788777777777
Q ss_pred CChHHHHHHHhhcCC--CC-cchHHHHHHHHhcCCChHHHHHHHhhCC---CCCccchhHHHHHHHhcCCHHHHHHHHHh
Q 007517 113 NRIDVARKLFEVMPE--KN-EVSWTAMLMGYTQCGRIQDAWELFKAMP---MKSVVASNSMILGLGQNGEVQKARVVFDQ 186 (600)
Q Consensus 113 g~~~~A~~~~~~m~~--p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~f~~ 186 (600)
.++++|++.|..... || ...+.-+.-.-++.|+++.....-.+.. +.....|..++.++.-.|+...|..+.++
T Consensus 89 K~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~e 168 (700)
T KOG1156|consen 89 KKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEE 168 (700)
T ss_pred hhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788888888888776 43 3344433333344555554444333333 33334455566666666666666666554
Q ss_pred ccc-----CChhhHHHHH------HHHHHcCChHHHHHHHHHHHHcCCccCchhH-hhHHHHHhhhcchHHHHHHHHHHH
Q 007517 187 MRE-----KDDATWSGMI------KVYERKGYELEVIDLFTLMQKEGVRVNFPSL-ISVLSVCASLASLDHGRQVHAQLV 254 (600)
Q Consensus 187 ~~~-----~~~~~~~~li------~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~-~~ll~~~~~~~~~~~a~~~~~~~~ 254 (600)
... ++...+.-.. .....+|..++|++-+..-... ..|...+ -.-.....+.+++++|..++..++
T Consensus 169 f~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll 246 (700)
T KOG1156|consen 169 FEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ--IVDKLAFEETKADLLMKLGQLEEAVKVYRRLL 246 (700)
T ss_pred HHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH--HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHH
Confidence 432 2222222221 1234455555555554433222 1222222 223334455566666666666665
Q ss_pred HcCCCCchh-hHHHHHHHHHHcCCHHHHH-hhhhhcCCCCH-HH-HHHHHHHHHhcCCh-HHHHHHHHHHHHCCCCCCHH
Q 007517 255 RCQFDVDVY-VASVLITMYIKCGELVKGK-LIFDNFASKDI-VM-WNSIISGYAQYGLG-EKSLKVFHEMFSSGVMPDDV 329 (600)
Q Consensus 255 ~~~~~~~~~-~~~~li~~y~~~g~~~~A~-~~~~~~~~~~~-~~-~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~p~~~ 329 (600)
... ||.. .|-.+..++.+-.+.-++. .+|....+.-. .. -.-+--...+..+. +..-+++..+.+.|++|--.
T Consensus 247 ~rn--Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~ 324 (700)
T KOG1156|consen 247 ERN--PDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFK 324 (700)
T ss_pred hhC--chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhh
Confidence 553 3332 2233333443222222222 44443332100 00 00000011111222 23334555666666655433
Q ss_pred HHHHHHHHHhccCCHHH----HHHHHHHhHhcC-C--------CCCChH--HHHHHHHHHhhcCCHHHHHHHHHhC-CCC
Q 007517 330 TLVGVLSACSYTGKVKE----GREIFESMKSKY-L--------VEPKTE--HYACMVDLLGRAGQVEDAMKLIEAM-PFE 393 (600)
Q Consensus 330 t~~~ll~a~~~~g~~~~----a~~~~~~~~~~~-~--------~~p~~~--~~~~li~~~~~~g~~~~A~~~~~~m-~~~ 393 (600)
.+.++ +-.-...+- +..+...+.... . -+|... ++-.++..|-+.|+++.|...++.. +..
T Consensus 325 dl~SL---yk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHT 401 (700)
T KOG1156|consen 325 DLRSL---YKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHT 401 (700)
T ss_pred hhHHH---HhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccC
Confidence 33333 222111111 222222221110 0 134443 3456788889999999999999887 656
Q ss_pred CCHH-HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 007517 394 PDAI-IWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMRKRNV 461 (600)
Q Consensus 394 p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 461 (600)
|+.+ .|..=...+...|+++.|...++++.+++-.|...-.--++-..++.+.++|.++.....+.|.
T Consensus 402 PTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 402 PTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred chHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc
Confidence 7654 3444456677789999999999999998866633322456666788999999999888877664
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.60 E-value=5.1e-06 Score=78.25 Aligned_cols=178 Identities=10% Similarity=0.005 Sum_probs=103.0
Q ss_pred hhhHHHHHHHHHHcCCHHHHHhhhhhcCC--C-CH---HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH----HH
Q 007517 262 VYVASVLITMYIKCGELVKGKLIFDNFAS--K-DI---VMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDV----TL 331 (600)
Q Consensus 262 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----t~ 331 (600)
...+-.+...|.+.|++++|...|+++.. | +. .+|..+...|.+.|++++|+..++++.+. .|+.. ++
T Consensus 33 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~ 110 (235)
T TIGR03302 33 AEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL--HPNHPDADYAY 110 (235)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCchHHHH
Confidence 34445555566666666666666665433 1 11 34555566666666666666666666553 22211 22
Q ss_pred HHHHHHHhcc--------CCHHHHHHHHHHhHhcCCCCCCh-HHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHH
Q 007517 332 VGVLSACSYT--------GKVKEGREIFESMKSKYLVEPKT-EHYACMVDLLGRAGQVEDAMKLIEAMPFEPDAIIWGSL 402 (600)
Q Consensus 332 ~~ll~a~~~~--------g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~l 402 (600)
..+..++... |+.++|.+.|+.+.+.+ |+. ..+..+.... ...... ......+
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---p~~~~~~~a~~~~~----~~~~~~-----------~~~~~~~ 172 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY---PNSEYAPDAKKRMD----YLRNRL-----------AGKELYV 172 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC---CCChhHHHHHHHHH----HHHHHH-----------HHHHHHH
Confidence 2233333322 45556666666555432 221 1221111110 000000 0011245
Q ss_pred HHHHHHcCCHHHHHHHHHHHhccCCCCC---chHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007517 403 LGACRTHMKLDLAEVAAKKLLQLEPKNA---GPYILLSNIYASQGRFHDVAELRKNMRKR 459 (600)
Q Consensus 403 l~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 459 (600)
...+...|+++.|...++++++..|+++ ..+..++.+|...|++++|..+++.+..+
T Consensus 173 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 173 ARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 5668889999999999999999877653 67889999999999999999999988754
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.59 E-value=4.1e-05 Score=77.16 Aligned_cols=19 Identities=5% Similarity=-0.206 Sum_probs=12.3
Q ss_pred HHHcCCHHHHHHHHHHHhc
Q 007517 406 CRTHMKLDLAEVAAKKLLQ 424 (600)
Q Consensus 406 ~~~~g~~~~a~~~~~~~~~ 424 (600)
+...|+.+.|.+.+..++.
T Consensus 317 ~~~~g~~~~A~~~L~~al~ 335 (355)
T cd05804 317 AFAEGNYATALELLGPVRD 335 (355)
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 4466777777777666654
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.55 E-value=0.00016 Score=82.62 Aligned_cols=351 Identities=9% Similarity=-0.010 Sum_probs=219.2
Q ss_pred HHhcCChHHHHHHHhhCCCCCccc--HHHHHHHHHhCCChHHHHHHHhhcCC----CCcchHHHHHHHHhcCCChHHHHH
Q 007517 78 YCQDGRVDEGREIFDEMPKKNVIS--WTTMISGYVNNNRIDVARKLFEVMPE----KNEVSWTAMLMGYTQCGRIQDAWE 151 (600)
Q Consensus 78 ~~~~g~~~~A~~~~~~m~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~----p~~~t~~~ll~~~~~~g~~~~a~~ 151 (600)
+...|++.+|..........+... ...........|+.+.+..++..+.. .+..........+...|+++++..
T Consensus 351 ~~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~ 430 (903)
T PRK04841 351 WLAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNT 430 (903)
T ss_pred HHHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHH
Confidence 334455555555555444322111 11122344556888888888777643 233333444555667899999888
Q ss_pred HHhhCC----CCC---c-c----chhHHHHHHHhcCCHHHHHHHHHhccc----CCh----hhHHHHHHHHHHcCChHHH
Q 007517 152 LFKAMP----MKS---V-V----ASNSMILGLGQNGEVQKARVVFDQMRE----KDD----ATWSGMIKVYERKGYELEV 211 (600)
Q Consensus 152 ~~~~~~----~~~---~-~----~~~~li~~~~~~g~~~~A~~~f~~~~~----~~~----~~~~~li~~~~~~g~~~~A 211 (600)
.+.... ..+ . . ....+...+...|++++|...+++... .+. ..++.+...+...|++++|
T Consensus 431 ~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A 510 (903)
T PRK04841 431 LLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARA 510 (903)
T ss_pred HHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 887654 111 1 1 112233456789999999999887643 121 2445666778889999999
Q ss_pred HHHHHHHHHcCCc---c--CchhHhhHHHHHhhhcchHHHHHHHHHHHHc----CCCC---chhhHHHHHHHHHHcCCHH
Q 007517 212 IDLFTLMQKEGVR---V--NFPSLISVLSVCASLASLDHGRQVHAQLVRC----QFDV---DVYVASVLITMYIKCGELV 279 (600)
Q Consensus 212 ~~~~~~m~~~g~~---p--~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~---~~~~~~~li~~y~~~g~~~ 279 (600)
...+.+.....-. + ...++..+...+...|+++.|...+...... +... ....+..+...+...|+++
T Consensus 511 ~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~ 590 (903)
T PRK04841 511 LAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLD 590 (903)
T ss_pred HHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHH
Confidence 9999888653111 1 1234445566778899999999988876653 2211 2234455666777889999
Q ss_pred HHHhhhhhcCC------C--CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-CCHHHH-----HHHHHHHhccCCHH
Q 007517 280 KGKLIFDNFAS------K--DIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVM-PDDVTL-----VGVLSACSYTGKVK 345 (600)
Q Consensus 280 ~A~~~~~~~~~------~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~t~-----~~ll~a~~~~g~~~ 345 (600)
+|...+++... + ....+..+...+...|++++|.+.+.+.....-. .....+ ...+..+...|+.+
T Consensus 591 ~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 670 (903)
T PRK04841 591 EAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKE 670 (903)
T ss_pred HHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHH
Confidence 99988876532 1 1334555666788899999999999887542111 111111 11123345578999
Q ss_pred HHHHHHHHhHhcCCCCC--ChHHHHHHHHHHhhcCCHHHHHHHHHhC-------CCCCC-HHHHHHHHHHHHHcCCHHHH
Q 007517 346 EGREIFESMKSKYLVEP--KTEHYACMVDLLGRAGQVEDAMKLIEAM-------PFEPD-AIIWGSLLGACRTHMKLDLA 415 (600)
Q Consensus 346 ~a~~~~~~~~~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~-~~~~~~ll~~~~~~g~~~~a 415 (600)
.|.+++........-.+ ....+..+..++...|+.++|...+++. +..++ ..+...+..++...|+.++|
T Consensus 671 ~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A 750 (903)
T PRK04841 671 AAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEA 750 (903)
T ss_pred HHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHH
Confidence 99999876543210001 0112356777889999999999988876 22222 33566667788999999999
Q ss_pred HHHHHHHhccCCC
Q 007517 416 EVAAKKLLQLEPK 428 (600)
Q Consensus 416 ~~~~~~~~~~~p~ 428 (600)
...+.+++++...
T Consensus 751 ~~~L~~Al~la~~ 763 (903)
T PRK04841 751 QRVLLEALKLANR 763 (903)
T ss_pred HHHHHHHHHHhCc
Confidence 9999999987544
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.54 E-value=7.5e-06 Score=74.11 Aligned_cols=147 Identities=11% Similarity=0.097 Sum_probs=113.0
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCC
Q 007517 300 ISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQ 379 (600)
Q Consensus 300 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 379 (600)
+.+|...|+++.+....+.+. .|. . .+...++.+++...++...+.. +.+...|..+...|...|+
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~----~~~-~-------~~~~~~~~~~~i~~l~~~L~~~--P~~~~~w~~Lg~~~~~~g~ 88 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLA----DPL-H-------QFASQQTPEAQLQALQDKIRAN--PQNSEQWALLGEYYLWRND 88 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHh----Ccc-c-------cccCchhHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHCCC
Confidence 346777888777644432221 111 0 1223566777777777776642 5678899999999999999
Q ss_pred HHHHHHHHHhC-CCCC-CHHHHHHHHHHH-HHcCC--HHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHH
Q 007517 380 VEDAMKLIEAM-PFEP-DAIIWGSLLGAC-RTHMK--LDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRK 454 (600)
Q Consensus 380 ~~~A~~~~~~m-~~~p-~~~~~~~ll~~~-~~~g~--~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 454 (600)
+++|...|++. ...| +...+..+..++ ...|+ .++|..+++++++.+|+++..+..++..+...|++++|...++
T Consensus 89 ~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~ 168 (198)
T PRK10370 89 YDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQ 168 (198)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999988 4455 567777777764 67677 5999999999999999999999999999999999999999999
Q ss_pred HHHhCC
Q 007517 455 NMRKRN 460 (600)
Q Consensus 455 ~m~~~g 460 (600)
++.+..
T Consensus 169 ~aL~l~ 174 (198)
T PRK10370 169 KVLDLN 174 (198)
T ss_pred HHHhhC
Confidence 998754
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.52 E-value=1e-05 Score=88.12 Aligned_cols=200 Identities=15% Similarity=0.164 Sum_probs=160.2
Q ss_pred CCchhhHHHHHHHHHHcCCHHHHHhhhhhcCC--------CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH
Q 007517 259 DVDVYVASVLITMYIKCGELVKGKLIFDNFAS--------KDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVT 330 (600)
Q Consensus 259 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 330 (600)
|.+...|-..+......+++++|++++++... .-...|.+++..-...|.-+...++|+++.+. --....
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V 1532 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTV 1532 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHH
Confidence 44566777777778888888888888887653 13457888888888888778888999998874 222345
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC---CHHHHHHHHHHH
Q 007517 331 LVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM-PFEP---DAIIWGSLLGAC 406 (600)
Q Consensus 331 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p---~~~~~~~ll~~~ 406 (600)
|..|+..|.+.+..++|.++++.|.++++ ....+|..+++.+.+..+-+.|.+++++. ..-| ......-.+..-
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence 77888889999999999999999999875 67788999999999999999999998876 2222 344455555666
Q ss_pred HHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCCc
Q 007517 407 RTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMRKRNVI 462 (600)
Q Consensus 407 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 462 (600)
.++|+.+++..+|+-++.-.|.....|..++++=.+.|..+.++.+|++....++.
T Consensus 1611 Fk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~ 1666 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLS 1666 (1710)
T ss_pred hhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Confidence 78899999999999999999988888999999999999999999999999888765
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.51 E-value=0.00016 Score=71.67 Aligned_cols=404 Identities=12% Similarity=0.150 Sum_probs=237.2
Q ss_pred CCcchHHHHHHHHHhCCChHHHHHHHhhCC---CCCcchHHHHHHHHHcCCCHHHHHHHHccCCC--CCcchHHHHHHHH
Q 007517 4 RNVVSWTAMVRGYVEEGMITEAGTLFWQMP---EKNVVSWTVMLGGFIRDSRIDDARRLFDMMPE--KDVVAQTNMVLGY 78 (600)
Q Consensus 4 p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~---~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~li~~~ 78 (600)
-|+.+|+.||+-+... .++++.+.++++. +..+..|..-+..-.+..+++...++|.+... -+...|..-|+--
T Consensus 18 ~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLnlDLW~lYl~YV 96 (656)
T KOG1914|consen 18 YDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLNLDLWKLYLSYV 96 (656)
T ss_pred ccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHhHHHHHHHHH
Confidence 3677999999977665 9999999999998 34567888889999999999999999998773 3667777666543
Q ss_pred Hh-cCChHHH----HHHHhhC------CCCCcccHHHHHHH---------HHhCCChHHHHHHHhhcCC-C---------
Q 007517 79 CQ-DGRVDEG----REIFDEM------PKKNVISWTTMISG---------YVNNNRIDVARKLFEVMPE-K--------- 128 (600)
Q Consensus 79 ~~-~g~~~~A----~~~~~~m------~~~~~~~~~~li~~---------~~~~g~~~~A~~~~~~m~~-p--------- 128 (600)
-+ .|....+ .+.|+-. .-.+-..|+.-+.. +..+.+.+...+++.++.. |
T Consensus 97 R~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlEkLW~ 176 (656)
T KOG1914|consen 97 RETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLEKLWK 176 (656)
T ss_pred HHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHHHHHH
Confidence 32 2333222 2222211 11233446655542 3344567777888888876 2
Q ss_pred CcchHHHHHHH-------HhcCCChHHHHHHHhhCC------CCCcc---------------chhHHHHHHHhcCCHH--
Q 007517 129 NEVSWTAMLMG-------YTQCGRIQDAWELFKAMP------MKSVV---------------ASNSMILGLGQNGEVQ-- 178 (600)
Q Consensus 129 ~~~t~~~ll~~-------~~~~g~~~~a~~~~~~~~------~~~~~---------------~~~~li~~~~~~g~~~-- 178 (600)
|-.+|-.=++. --+...+..|+++++++. ..... .|-.+|.-= +.+-+.
T Consensus 177 DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wE-ksNpL~t~ 255 (656)
T KOG1914|consen 177 DYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWE-KSNPLRTL 255 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHH-hcCCcccc
Confidence 21222221211 112344556666666654 11111 132333221 111111
Q ss_pred -----H--HHHHHHhccc---CChhhHHHH-------HHHHHHcCC-------hHHHHHHHHHHHHcCCccCchhHhhHH
Q 007517 179 -----K--ARVVFDQMRE---KDDATWSGM-------IKVYERKGY-------ELEVIDLFTLMQKEGVRVNFPSLISVL 234 (600)
Q Consensus 179 -----~--A~~~f~~~~~---~~~~~~~~l-------i~~~~~~g~-------~~~A~~~~~~m~~~g~~p~~~t~~~ll 234 (600)
. ..=++++... -.+..|-.- -..+...|+ .+++..+++.....-..-+..+|..+.
T Consensus 256 ~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a 335 (656)
T KOG1914|consen 256 DGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFALA 335 (656)
T ss_pred cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 0011111110 011222111 122333333 456666666655443333444444443
Q ss_pred HHHhhhc---chHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHhhhhhcCC-----CCHHHHHHHHHHHHhc
Q 007517 235 SVCASLA---SLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFAS-----KDIVMWNSIISGYAQY 306 (600)
Q Consensus 235 ~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~ 306 (600)
.---..- ..+....++..+.......-..+|..+++.-.+..-+..|+.+|.+..+ .++...++++.-|+.
T Consensus 336 ~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs- 414 (656)
T KOG1914|consen 336 DYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS- 414 (656)
T ss_pred hhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-
Confidence 3222222 2555666666666554333446777888888888889999999988765 277788888887774
Q ss_pred CChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCC--hHHHHHHHHHHhhcCCHHHH
Q 007517 307 GLGEKSLKVFHEMFSSGVMPDDV-TLVGVLSACSYTGKVKEGREIFESMKSKYLVEPK--TEHYACMVDLLGRAGQVEDA 383 (600)
Q Consensus 307 g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A 383 (600)
++..-|.++|+--.+. -+|.. --...+.-+++.++-..++.+|+..... ++.|+ ...|..+++-=..-|++..+
T Consensus 415 kD~~~AfrIFeLGLkk--f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s-~l~~~ks~~Iw~r~l~yES~vGdL~si 491 (656)
T KOG1914|consen 415 KDKETAFRIFELGLKK--FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTS-VLSADKSKEIWDRMLEYESNVGDLNSI 491 (656)
T ss_pred CChhHHHHHHHHHHHh--cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhc-cCChhhhHHHHHHHHHHHHhcccHHHH
Confidence 5667899999875543 23333 3344566777888999999999998886 66665 67899999999999999999
Q ss_pred HHHHHhC----C--CCCCHHHHHHHHHHHHHcCCHH
Q 007517 384 MKLIEAM----P--FEPDAIIWGSLLGACRTHMKLD 413 (600)
Q Consensus 384 ~~~~~~m----~--~~p~~~~~~~ll~~~~~~g~~~ 413 (600)
.++-+++ + ..|....-..+++-|...+...
T Consensus 492 ~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~ 527 (656)
T KOG1914|consen 492 LKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYP 527 (656)
T ss_pred HHHHHHHHHhcchhhcCCCChHHHHHHHHhhccccc
Confidence 8887766 2 2222223334455555555443
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.51 E-value=4.2e-05 Score=75.79 Aligned_cols=183 Identities=14% Similarity=0.115 Sum_probs=128.0
Q ss_pred HHHHHHHHHcCCHHHHHhhhhhcCC--CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH-------HHHHH
Q 007517 266 SVLITMYIKCGELVKGKLIFDNFAS--KDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTL-------VGVLS 336 (600)
Q Consensus 266 ~~li~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~-------~~ll~ 336 (600)
..+.++..+..+++.|.+-+....+ .++.-++....+|...|.+.+....-....+.|-. ...-| ..+-.
T Consensus 228 k~lgnaaykkk~f~~a~q~y~~a~el~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~ 306 (539)
T KOG0548|consen 228 KELGNAAYKKKDFETAIQHYAKALELATDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGN 306 (539)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhHhhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhh
Confidence 3456666677778888877776544 45555677778899998888887777776665521 11122 22333
Q ss_pred HHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHHcCCHHH
Q 007517 337 ACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM-PFEPDAI-IWGSLLGACRTHMKLDL 414 (600)
Q Consensus 337 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~-~~~~ll~~~~~~g~~~~ 414 (600)
++.+.++++.+..+|.+....+. .| +.+.+....+++.+..+.. -+.|... --..=.+.+.+.|++..
T Consensus 307 a~~k~~~~~~ai~~~~kaLte~R-t~---------~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~ 376 (539)
T KOG0548|consen 307 AYTKREDYEGAIKYYQKALTEHR-TP---------DLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPE 376 (539)
T ss_pred hhhhHHhHHHHHHHHHHHhhhhc-CH---------HHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHH
Confidence 66667889999999988776542 22 2344555566666666554 2345432 22333667889999999
Q ss_pred HHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007517 415 AEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMRKR 459 (600)
Q Consensus 415 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 459 (600)
|.+.+.+++..+|+++..|...+-+|.+.|.+.+|.+=-+.-.+.
T Consensus 377 Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL 421 (539)
T KOG0548|consen 377 AVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIEL 421 (539)
T ss_pred HHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999865555443
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.47 E-value=0.00011 Score=68.60 Aligned_cols=301 Identities=7% Similarity=0.015 Sum_probs=174.6
Q ss_pred HHHHHHHHhcCChHHHHHHHhhCCCCCcccHHHHH---HHHHhCCChHHHHHHHhhcCC--CCcch-HHHHHHHHhcCCC
Q 007517 72 TNMVLGYCQDGRVDEGREIFDEMPKKNVISWTTMI---SGYVNNNRIDVARKLFEVMPE--KNEVS-WTAMLMGYTQCGR 145 (600)
Q Consensus 72 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li---~~~~~~g~~~~A~~~~~~m~~--p~~~t-~~~ll~~~~~~g~ 145 (600)
--+...+...|++.+|+.-|....+-|+..|-++. ..|...|+...|+.=|.+..+ ||-.. -..-...+.+.|.
T Consensus 42 lElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Ge 121 (504)
T KOG0624|consen 42 LELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGE 121 (504)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhccc
Confidence 35677788889999999999999988888887765 467888999899888888877 66432 2233456788999
Q ss_pred hHHHHHHHhhCCCCCccchhHHHHHHHhcCCHHHHHHHHHhcccCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCcc
Q 007517 146 IQDAWELFKAMPMKSVVASNSMILGLGQNGEVQKARVVFDQMREKDDATWSGMIKVYERKGYELEVIDLFTLMQKEGVRV 225 (600)
Q Consensus 146 ~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 225 (600)
++.|..-|+.++..++.- +....++.+.-..++-+.+ ...+..+..+|+...|++....+.+.. +.
T Consensus 122 le~A~~DF~~vl~~~~s~-~~~~eaqskl~~~~e~~~l------------~~ql~s~~~~GD~~~ai~~i~~llEi~-~W 187 (504)
T KOG0624|consen 122 LEQAEADFDQVLQHEPSN-GLVLEAQSKLALIQEHWVL------------VQQLKSASGSGDCQNAIEMITHLLEIQ-PW 187 (504)
T ss_pred HHHHHHHHHHHHhcCCCc-chhHHHHHHHHhHHHHHHH------------HHHHHHHhcCCchhhHHHHHHHHHhcC-cc
Confidence 999999999998333210 1111111111111111111 112223334444444444444444321 22
Q ss_pred CchhHhhHHHHHhhhcchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHhhhhhcCC--CCH----HHHHH-
Q 007517 226 NFPSLISVLSVCASLASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFAS--KDI----VMWNS- 298 (600)
Q Consensus 226 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~----~~~~~- 298 (600)
|...+..-..++...|.+..|+.-+..+.+..- .+....--+-..+...|+.+.++...++... ||- ..|..
T Consensus 188 da~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~-DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKkl 266 (504)
T KOG0624|consen 188 DASLRQARAKCYIAEGEPKKAIHDLKQASKLSQ-DNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKL 266 (504)
T ss_pred hhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccc-cchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHH
Confidence 333333333444444444444444433333321 1222222333444444555554444444332 111 01111
Q ss_pred ------H--HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH---HHHHHHHhccCCHHHHHHHHHHhHhcCCCCCC-hHH
Q 007517 299 ------I--ISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTL---VGVLSACSYTGKVKEGREIFESMKSKYLVEPK-TEH 366 (600)
Q Consensus 299 ------l--i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~---~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~ 366 (600)
| +......+++.++++..+...+.......+++ ..+-.++...|.+.+|++...++.. +.|+ +.+
T Consensus 267 kKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~---~d~~dv~~ 343 (504)
T KOG0624|consen 267 KKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLD---IDPDDVQV 343 (504)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHh---cCchHHHH
Confidence 1 22345667888888888887765322223333 3444566778899999999888875 3555 888
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC
Q 007517 367 YACMVDLLGRAGQVEDAMKLIEAM 390 (600)
Q Consensus 367 ~~~li~~~~~~g~~~~A~~~~~~m 390 (600)
+.--.++|.-...+++|..-|+..
T Consensus 344 l~dRAeA~l~dE~YD~AI~dye~A 367 (504)
T KOG0624|consen 344 LCDRAEAYLGDEMYDDAIHDYEKA 367 (504)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHH
Confidence 888899999999999999999887
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.47 E-value=2.3e-07 Score=56.68 Aligned_cols=33 Identities=27% Similarity=0.383 Sum_probs=22.4
Q ss_pred CCCCchhhHHHHHHHHHHcCCHHHHHhhhhhcC
Q 007517 257 QFDVDVYVASVLITMYIKCGELVKGKLIFDNFA 289 (600)
Q Consensus 257 ~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~ 289 (600)
|+.||..+||+||++|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 566777777777777777777777777666663
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.47 E-value=0.0012 Score=65.65 Aligned_cols=419 Identities=12% Similarity=0.121 Sum_probs=240.3
Q ss_pred CCCcchHHHHHHHHHcCCCHHHHHHHHccCCC---CCcchHHHHHHHHHhcCChHHHHHHHhhCCC--CCcccHHHHHHH
Q 007517 34 EKNVVSWTVMLGGFIRDSRIDDARRLFDMMPE---KDVVAQTNMVLGYCQDGRVDEGREIFDEMPK--KNVISWTTMISG 108 (600)
Q Consensus 34 ~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~li~~ 108 (600)
+.|..+|+.|+.-+... .++++++.++++.. .....|..-|..-.+..+++..+++|.+... -++..|..-++-
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLnlDLW~lYl~Y 95 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLNLDLWKLYLSY 95 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHhHHHHHHHH
Confidence 44778899999876655 89999999998873 3567788888888888999999999988764 466677776653
Q ss_pred HHh-CCChHH----HHHHHhhcCC------CCcchHHHHHHH---------HhcCCChHHHHHHHhhCCCCCcc----ch
Q 007517 109 YVN-NNRIDV----ARKLFEVMPE------KNEVSWTAMLMG---------YTQCGRIQDAWELFKAMPMKSVV----AS 164 (600)
Q Consensus 109 ~~~-~g~~~~----A~~~~~~m~~------p~~~t~~~ll~~---------~~~~g~~~~a~~~~~~~~~~~~~----~~ 164 (600)
--+ +|.... ..+.|+-... .....|+..+.. +....+++..+++++++...... .|
T Consensus 96 VR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlEkLW 175 (656)
T KOG1914|consen 96 VRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLEKLW 175 (656)
T ss_pred HHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHHHHH
Confidence 222 232222 1222222222 122233333332 22333556667777777622222 22
Q ss_pred hHHHHH-------------HHhcCCHHHHHHHHHhccc------CCh---------------hhHHHHHHHHHHcCCh--
Q 007517 165 NSMILG-------------LGQNGEVQKARVVFDQMRE------KDD---------------ATWSGMIKVYERKGYE-- 208 (600)
Q Consensus 165 ~~li~~-------------~~~~g~~~~A~~~f~~~~~------~~~---------------~~~~~li~~~~~~g~~-- 208 (600)
+-.... --+...+-.|++++++... ++. ..|-.+|.-=..++--
T Consensus 176 ~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~t~ 255 (656)
T KOG1914|consen 176 KDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLRTL 255 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCcccc
Confidence 211100 0012234455555555431 111 1143344322211110
Q ss_pred ------HHHHHHHHH-HHHcCCccCchhH-hhHH----HHHhhhcc-------hHHHHHHHHHHHHcCCCCchhhHHHHH
Q 007517 209 ------LEVIDLFTL-MQKEGVRVNFPSL-ISVL----SVCASLAS-------LDHGRQVHAQLVRCQFDVDVYVASVLI 269 (600)
Q Consensus 209 ------~~A~~~~~~-m~~~g~~p~~~t~-~~ll----~~~~~~~~-------~~~a~~~~~~~~~~~~~~~~~~~~~li 269 (600)
....-.+++ |+--+..|+..-. ...+ ..+...|+ -+++..+++..+..-...+..+|.++.
T Consensus 256 ~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a 335 (656)
T KOG1914|consen 256 DGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFALA 335 (656)
T ss_pred cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 011111221 1112333332211 1111 11222233 334445555544433333334443333
Q ss_pred HHHHHcC---CHHHHHhhhhhcCC----CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhcc
Q 007517 270 TMYIKCG---ELVKGKLIFDNFAS----KDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMP-DDVTLVGVLSACSYT 341 (600)
Q Consensus 270 ~~y~~~g---~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~ 341 (600)
+.=-..- ..+.....+++... .-..+|-..+..-.+..-.+.|..+|.+..+.+..+ +.....+++.-++ .
T Consensus 336 ~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-s 414 (656)
T KOG1914|consen 336 DYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-S 414 (656)
T ss_pred hhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-c
Confidence 2111111 12333333433332 233567777888788888899999999999998888 5566777776555 5
Q ss_pred CCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC---CCCCC--HHHHHHHHHHHHHcCCHHHHH
Q 007517 342 GKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM---PFEPD--AIIWGSLLGACRTHMKLDLAE 416 (600)
Q Consensus 342 g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~p~--~~~~~~ll~~~~~~g~~~~a~ 416 (600)
++.+-|.++|+.-.+++| .++..-...++-+...++-..|..+|++. .+.|+ ..+|..++.--..-|+...+.
T Consensus 415 kD~~~AfrIFeLGLkkf~--d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~ 492 (656)
T KOG1914|consen 415 KDKETAFRIFELGLKKFG--DSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSIL 492 (656)
T ss_pred CChhHHHHHHHHHHHhcC--CChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHH
Confidence 899999999998887653 45666678999999999999999999988 23444 578999999999999999999
Q ss_pred HHHHHHhccCCCC----CchHHHHHHHHHhcCCchHHHHHHHHH
Q 007517 417 VAAKKLLQLEPKN----AGPYILLSNIYASQGRFHDVAELRKNM 456 (600)
Q Consensus 417 ~~~~~~~~~~p~~----~~~~~~l~~~~~~~g~~~~a~~~~~~m 456 (600)
.+-++....-|.+ ...-..+.+-|.-.+.+..-..-++.|
T Consensus 493 ~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~c~~~elk~l 536 (656)
T KOG1914|consen 493 KLEKRRFTAFPADQEYEGNETALFVDRYGILDLYPCSLDELKFL 536 (656)
T ss_pred HHHHHHHHhcchhhcCCCChHHHHHHHHhhcccccccHHHHHhh
Confidence 9988877654421 123455677777777776655555555
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.47 E-value=3e-05 Score=70.89 Aligned_cols=300 Identities=16% Similarity=0.112 Sum_probs=150.9
Q ss_pred HHHHHHHHhcCCChHHHHHHHhhCCCC---CccchhHHHHHHHhcCCHHHHHHHHHhccc--CChhhHHH-HHHHHHHcC
Q 007517 133 WTAMLMGYTQCGRIQDAWELFKAMPMK---SVVASNSMILGLGQNGEVQKARVVFDQMRE--KDDATWSG-MIKVYERKG 206 (600)
Q Consensus 133 ~~~ll~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~f~~~~~--~~~~~~~~-li~~~~~~g 206 (600)
+++++..+.+..+++.+.+++..-.+. +....+.|..+|....++..|-..++++.. |...-|.. -...+-+.+
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~ 92 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKAC 92 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhc
Confidence 444444455556666666665544422 333344555566666666666666666543 22222221 123344555
Q ss_pred ChHHHHHHHHHHHHcCCccCchhHhhHHHH--HhhhcchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHhh
Q 007517 207 YELEVIDLFTLMQKEGVRVNFPSLISVLSV--CASLASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLI 284 (600)
Q Consensus 207 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~ 284 (600)
.+..|+.+...|... |+...-..-+.+ .-+.+++..++.+.++.-.. .+..+.+...-...+.|+.+.|.+-
T Consensus 93 i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e---n~Ad~~in~gCllykegqyEaAvqk 166 (459)
T KOG4340|consen 93 IYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE---NEADGQINLGCLLYKEGQYEAAVQK 166 (459)
T ss_pred ccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCC---CccchhccchheeeccccHHHHHHH
Confidence 666666666555432 111111111111 11233444444443333211 1222222222233444555555555
Q ss_pred hhhcCC----CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCC
Q 007517 285 FDNFAS----KDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLV 360 (600)
Q Consensus 285 ~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~ 360 (600)
|+...+ .....||.-+.- .+.|+++.|+++..+++++|++..+. ++ .|..-++..+ ... |
T Consensus 167 FqaAlqvsGyqpllAYniALaH-y~~~qyasALk~iSEIieRG~r~HPE-lg--------IGm~tegiDv----rsv-g- 230 (459)
T KOG4340|consen 167 FQAALQVSGYQPLLAYNLALAH-YSSRQYASALKHISEIIERGIRQHPE-LG--------IGMTTEGIDV----RSV-G- 230 (459)
T ss_pred HHHHHhhcCCCchhHHHHHHHH-HhhhhHHHHHHHHHHHHHhhhhcCCc-cC--------ccceeccCch----hcc-c-
Confidence 544433 233444433322 23344555555555555554432211 00 0111010000 000 0
Q ss_pred CCCh-------HHHHHHHHHHhhcCCHHHHHHHHHhCC----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC
Q 007517 361 EPKT-------EHYACMVDLLGRAGQVEDAMKLIEAMP----FEPDAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKN 429 (600)
Q Consensus 361 ~p~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~----~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 429 (600)
.|-. ..+|.-...+.+.|+++.|.+.+-.|| .+.|++|...+.-. -..+++..+.+-+.-+++++|-.
T Consensus 231 Nt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nPfP 309 (459)
T KOG4340|consen 231 NTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNPFP 309 (459)
T ss_pred chHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCCCC
Confidence 0111 223333445678999999999999994 23477776654322 23567778888888899999988
Q ss_pred CchHHHHHHHHHhcCCchHHHHHHHH
Q 007517 430 AGPYILLSNIYASQGRFHDVAELRKN 455 (600)
Q Consensus 430 ~~~~~~l~~~~~~~g~~~~a~~~~~~ 455 (600)
+.+|..++-.|++..-++-|..++.+
T Consensus 310 ~ETFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 310 PETFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred hHHHHHHHHHHhhhHHHhHHHHHHhh
Confidence 89999999999999999999887654
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=5.9e-06 Score=70.69 Aligned_cols=122 Identities=10% Similarity=-0.031 Sum_probs=86.4
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CC
Q 007517 314 KVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM-PF 392 (600)
Q Consensus 314 ~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~ 392 (600)
.+|++..+ +.|+. +.....++...|++++|...|+..... -+.+...|..+..++.+.|++++|...|++. ..
T Consensus 14 ~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 14 DILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLVMA--QPWSWRAHIALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 34555544 34553 334555667778888888888877653 1346777778888888888888888888877 33
Q ss_pred CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHH
Q 007517 393 EP-DAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYA 441 (600)
Q Consensus 393 ~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 441 (600)
.| +...|..+..++...|+.++|...+++++++.|+++..+...+.+..
T Consensus 88 ~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~ 137 (144)
T PRK15359 88 DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQI 137 (144)
T ss_pred CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 44 56777778888888888888888888888888888777766666553
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.46 E-value=2.5e-05 Score=85.24 Aligned_cols=226 Identities=12% Similarity=0.145 Sum_probs=143.5
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHcCCccC-----chhHhhHHHHHhhhcchHHHHHHHHHHHHcCCCCchhhHHHH
Q 007517 194 TWSGMIKVYERKGYELEVIDLFTLMQKEGVRVN-----FPSLISVLSVCASLASLDHGRQVHAQLVRCQFDVDVYVASVL 268 (600)
Q Consensus 194 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 268 (600)
.|-..|.-..+.++.++|.+++++.+.. +.+. ...|.++++.--.-|.-+...++|+++.+.. ....+|..|
T Consensus 1460 ~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~~~L 1536 (1710)
T KOG1070|consen 1460 LWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVHLKL 1536 (1710)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHHHHH
Confidence 3444444444444444444444444332 1111 1123333333333344444455555554432 234567778
Q ss_pred HHHHHHcCCHHHHHhhhhhcCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHhccCCH
Q 007517 269 ITMYIKCGELVKGKLIFDNFAS---KDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLV-GVLSACSYTGKV 344 (600)
Q Consensus 269 i~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~-~ll~a~~~~g~~ 344 (600)
...|.+.++.++|-++|+.|.+ .....|...+..+.++++.+.|..++.+..+.-.+-..+-+. -.+..-.+.|+.
T Consensus 1537 ~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDa 1616 (1710)
T KOG1070|consen 1537 LGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDA 1616 (1710)
T ss_pred HHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCc
Confidence 8888888888888888888865 356788888899999998899999999887752222233222 223333567899
Q ss_pred HHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC---CCCC--CHHHHHHHHHHHHHcCCHHHHHHHH
Q 007517 345 KEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM---PFEP--DAIIWGSLLGACRTHMKLDLAEVAA 419 (600)
Q Consensus 345 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~p--~~~~~~~ll~~~~~~g~~~~a~~~~ 419 (600)
+.|+.+|+.....+ +-..+.|+.++++-.+.|+.+.+..+|++. ++.| --..|.-.+.--..+|+-+.++.+=
T Consensus 1617 eRGRtlfEgll~ay--PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE~VK 1694 (1710)
T KOG1070|consen 1617 ERGRTLFEGLLSAY--PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVEYVK 1694 (1710)
T ss_pred hhhHHHHHHHHhhC--ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHHHHH
Confidence 99999999988764 456888999999999999999999999987 3333 3456666676667777766666655
Q ss_pred HHHhc
Q 007517 420 KKLLQ 424 (600)
Q Consensus 420 ~~~~~ 424 (600)
.++.+
T Consensus 1695 arA~E 1699 (1710)
T KOG1070|consen 1695 ARAKE 1699 (1710)
T ss_pred HHHHH
Confidence 55443
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.45 E-value=2.7e-05 Score=82.18 Aligned_cols=168 Identities=14% Similarity=0.052 Sum_probs=116.2
Q ss_pred HHHHHHHHccCCCCCc---chHHHHHHHHHhcCChHHHHHHHhhCCC---CCcccHHHHHHHHHhCCChHHHHHHHhhcC
Q 007517 53 IDDARRLFDMMPEKDV---VAQTNMVLGYCQDGRVDEGREIFDEMPK---KNVISWTTMISGYVNNNRIDVARKLFEVMP 126 (600)
Q Consensus 53 ~~~A~~~~~~m~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 126 (600)
...|...|-+..+.|+ ..|..|...|...-+...|.+-|++..+ .+..++....+.|++...++.|..+.-..-
T Consensus 474 ~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~ 553 (1238)
T KOG1127|consen 474 SALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAA 553 (1238)
T ss_pred HHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHh
Confidence 4444444444433333 4577777777777788888888887665 466788888889999999988888743333
Q ss_pred C--C---CcchHHHHHHHHhcCCChHHHHHHHhhCC---CCCccchhHHHHHHHhcCCHHHHHHHHHhcccCChhhHHHH
Q 007517 127 E--K---NEVSWTAMLMGYTQCGRIQDAWELFKAMP---MKSVVASNSMILGLGQNGEVQKARVVFDQMREKDDATWSGM 198 (600)
Q Consensus 127 ~--p---~~~t~~~ll~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~l 198 (600)
+ | -...|..+.-.+...++...+..-|+... +.|...|..|..+|.++|++..|.++|.+...-++.+|-.-
T Consensus 554 qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~ 633 (1238)
T KOG1127|consen 554 QKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGR 633 (1238)
T ss_pred hhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHH
Confidence 3 1 11233335555677788888888888777 66777888899999999999999999988876555544322
Q ss_pred ---HHHHHHcCChHHHHHHHHHHHH
Q 007517 199 ---IKVYERKGYELEVIDLFTLMQK 220 (600)
Q Consensus 199 ---i~~~~~~g~~~~A~~~~~~m~~ 220 (600)
...-+..|.+.+|++.+.....
T Consensus 634 fk~A~~ecd~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 634 FKEAVMECDNGKYKEALDALGLIIY 658 (1238)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 2234567888888888877654
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.45 E-value=0.0024 Score=68.05 Aligned_cols=87 Identities=14% Similarity=0.139 Sum_probs=44.8
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHhHhcCCCC------CChHHHHH
Q 007517 297 NSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDV-TLVGVLSACSYTGKVKEGREIFESMKSKYLVE------PKTEHYAC 369 (600)
Q Consensus 297 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~------p~~~~~~~ 369 (600)
.-++.-|-..|-+++.+.+++... |+.--.. .|+-+.-.|++ =.+++..+.++-.-.+-+++ .....|+-
T Consensus 1283 eeli~~Yq~rGyFeElIsl~Ea~L--GLERAHMgmfTELaiLYsk-ykp~km~EHl~LFwsRvNipKviRA~eqahlW~E 1359 (1666)
T KOG0985|consen 1283 EELIEYYQDRGYFEELISLLEAGL--GLERAHMGMFTELAILYSK-YKPEKMMEHLKLFWSRVNIPKVIRAAEQAHLWSE 1359 (1666)
T ss_pred HHHHHHHHhcCcHHHHHHHHHhhh--chhHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 445666666777777777666543 2222222 23333333333 23444444333332222221 13456888
Q ss_pred HHHHHhhcCCHHHHHHH
Q 007517 370 MVDLLGRAGQVEDAMKL 386 (600)
Q Consensus 370 li~~~~~~g~~~~A~~~ 386 (600)
++..|.+-..+|.|.-.
T Consensus 1360 lvfLY~~y~eyDNAa~t 1376 (1666)
T KOG0985|consen 1360 LVFLYDKYEEYDNAALT 1376 (1666)
T ss_pred HHHHHHhhhhhhHHHHH
Confidence 88888888777776543
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.44 E-value=3.5e-07 Score=55.84 Aligned_cols=32 Identities=31% Similarity=0.579 Sum_probs=24.2
Q ss_pred CCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC
Q 007517 359 LVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM 390 (600)
Q Consensus 359 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 390 (600)
|+.||..+|++||++|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 56777777777777777777777777777776
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.40 E-value=6.2e-06 Score=69.38 Aligned_cols=118 Identities=14% Similarity=0.084 Sum_probs=97.6
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHH
Q 007517 364 TEHYACMVDLLGRAGQVEDAMKLIEAM-PFEP-DAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYA 441 (600)
Q Consensus 364 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 441 (600)
....-.+...+...|++++|.++|+-. .+.| +..-|..|...|...|++++|+..+.++..++|++|.++..++.+|.
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L 114 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 444555677778899999999999987 4445 56779999999999999999999999999999999999999999999
Q ss_pred hcCCchHHHHHHHHHHhCCCccCCceeEEEeCCEEEEEEcCCCCCCCChHHHHHHHHHHHHHHH
Q 007517 442 SQGRFHDVAELRKNMRKRNVIKPPGCSWIEVEKKVHMFTGRDCVSHPEHPMIMRMLEKIGGLLR 505 (600)
Q Consensus 442 ~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~~~~~~l~~l~~~~~ 505 (600)
..|+.+.|++-|+......- . +|+...+..+.+.....+.
T Consensus 115 ~lG~~~~A~~aF~~Ai~~~~-----------------------~-~~~~~~l~~~A~~~L~~l~ 154 (157)
T PRK15363 115 ACDNVCYAIKALKAVVRICG-----------------------E-VSEHQILRQRAEKMLQQLS 154 (157)
T ss_pred HcCCHHHHHHHHHHHHHHhc-----------------------c-ChhHHHHHHHHHHHHHHhh
Confidence 99999999999998775421 1 6777777777766666553
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.40 E-value=1.8e-05 Score=67.76 Aligned_cols=107 Identities=15% Similarity=0.035 Sum_probs=91.5
Q ss_pred HHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Q 007517 349 EIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM-PFEP-DAIIWGSLLGACRTHMKLDLAEVAAKKLLQLE 426 (600)
Q Consensus 349 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 426 (600)
.+++...+ +.|+ .+..+...+...|++++|.+.|+.. ...| +...|..+..++...|++++|...++++++++
T Consensus 14 ~~~~~al~---~~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 14 DILKQLLS---VDPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHHH---cCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 34554443 2344 4667888999999999999999987 4455 67889999999999999999999999999999
Q ss_pred CCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 007517 427 PKNAGPYILLSNIYASQGRFHDVAELRKNMRKRN 460 (600)
Q Consensus 427 p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 460 (600)
|+++..+..++.++...|++++|.+.++...+..
T Consensus 89 p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 89 ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS 122 (144)
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999987643
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.36 E-value=0.00011 Score=71.61 Aligned_cols=177 Identities=11% Similarity=0.075 Sum_probs=102.8
Q ss_pred HHHHHhhhhhcCC---CCHHHHHHHHHHHHhcCCh--HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHH
Q 007517 278 LVKGKLIFDNFAS---KDIVMWNSIISGYAQYGLG--EKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFE 352 (600)
Q Consensus 278 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~--~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 352 (600)
+++++..++++.. ++..+|+.....+.+.|.. ++++.+++++.+.. +-|...|.....++.+.|+++++.+.++
T Consensus 88 l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~ 166 (320)
T PLN02789 88 LEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCH 166 (320)
T ss_pred HHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 4555555544432 3444555443334444432 45566666665532 2233455555555556666666666666
Q ss_pred HhHhcCCCCCChHHHHHHHHHHhhc---CC----HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHc----CCHHHHHHHH
Q 007517 353 SMKSKYLVEPKTEHYACMVDLLGRA---GQ----VEDAMKLIEAM-PFEP-DAIIWGSLLGACRTH----MKLDLAEVAA 419 (600)
Q Consensus 353 ~~~~~~~~~p~~~~~~~li~~~~~~---g~----~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~----g~~~~a~~~~ 419 (600)
++.+.. +.+...|+....++.+. |. .+++.+...++ ...| |...|+.+...+... +...+|...+
T Consensus 167 ~~I~~d--~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~ 244 (320)
T PLN02789 167 QLLEED--VRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVC 244 (320)
T ss_pred HHHHHC--CCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHH
Confidence 665531 23444555444444333 22 23455555333 3345 567788888887773 3446688888
Q ss_pred HHHhccCCCCCchHHHHHHHHHhcC------------------CchHHHHHHHHHH
Q 007517 420 KKLLQLEPKNAGPYILLSNIYASQG------------------RFHDVAELRKNMR 457 (600)
Q Consensus 420 ~~~~~~~p~~~~~~~~l~~~~~~~g------------------~~~~a~~~~~~m~ 457 (600)
.++...+|+++.....|+..|+... ..++|.++++.+.
T Consensus 245 ~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~ 300 (320)
T PLN02789 245 LEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELE 300 (320)
T ss_pred HHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHHH
Confidence 8888888998888899999998643 2356777777773
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.34 E-value=2.9e-05 Score=77.51 Aligned_cols=212 Identities=16% Similarity=0.172 Sum_probs=152.4
Q ss_pred HhcCCChHHHHHHHhhCC---CCCccchhHHHHHHHhcCCHHHHHHHHHhcccC---ChhhHHHHHHHHHHcCChHHHHH
Q 007517 140 YTQCGRIQDAWELFKAMP---MKSVVASNSMILGLGQNGEVQKARVVFDQMREK---DDATWSGMIKVYERKGYELEVID 213 (600)
Q Consensus 140 ~~~~g~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~ 213 (600)
+.+.|++.+|.-.|+..+ +.+...|.-|.......++-..|+..+++..+- |....-+|.-.|...|.-.+|+.
T Consensus 295 lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~ 374 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALK 374 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHH
Confidence 456788888888888877 555667878888888888888888888887754 55666777778888888899999
Q ss_pred HHHHHHHcCCc--------cCchhHhhHHHHHhhhcchHHHHHHHHHH-HHcCCCCchhhHHHHHHHHHHcCCHHHHHhh
Q 007517 214 LFTLMQKEGVR--------VNFPSLISVLSVCASLASLDHGRQVHAQL-VRCQFDVDVYVASVLITMYIKCGELVKGKLI 284 (600)
Q Consensus 214 ~~~~m~~~g~~--------p~~~t~~~ll~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~ 284 (600)
.|+.......+ ++..+-.. +.......+....++|-.+ ...+..+|+.+...|.-.|--.|+++.|...
T Consensus 375 ~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDc 452 (579)
T KOG1125|consen 375 MLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDC 452 (579)
T ss_pred HHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHH
Confidence 88888654311 01110000 1222233344444444444 4455557888888888889999999999999
Q ss_pred hhhcCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHhH
Q 007517 285 FDNFAS---KDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDV-TLVGVLSACSYTGKVKEGREIFESMK 355 (600)
Q Consensus 285 ~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~ 355 (600)
|+.... .|...||-|...++...+.++|+..|++.++ ++|+-+ ....|.-+|...|.+++|.+.|-...
T Consensus 453 f~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 453 FEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred HHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 987754 4778999999999999999999999999887 578765 33345557889999999988876543
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.31 E-value=2.1e-05 Score=71.06 Aligned_cols=133 Identities=18% Similarity=0.188 Sum_probs=99.2
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHH
Q 007517 325 MPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM--PFEPDAIIWGSL 402 (600)
Q Consensus 325 ~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~l 402 (600)
.|+......+-.++...|+-+....+.......+ +.+......++....+.|++.+|...|.+. +-++|...|+.+
T Consensus 63 ~p~d~~i~~~a~a~~~~G~a~~~l~~~~~~~~~~--~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~l 140 (257)
T COG5010 63 NPEDLSIAKLATALYLRGDADSSLAVLQKSAIAY--PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLL 140 (257)
T ss_pred CcchHHHHHHHHHHHhcccccchHHHHhhhhccC--cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHH
Confidence 4543333445556666777777777766654432 345566666888888888888888888877 445678888888
Q ss_pred HHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007517 403 LGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMRKR 459 (600)
Q Consensus 403 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 459 (600)
.-+|.+.|+.+.|...+.+++++.|++|..+..|+..|.-.|+.+.|..++......
T Consensus 141 gaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~ 197 (257)
T COG5010 141 GAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLS 197 (257)
T ss_pred HHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 888888888888888888888888888888888888888888888888888777654
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.30 E-value=6.6e-05 Score=80.55 Aligned_cols=140 Identities=14% Similarity=0.070 Sum_probs=107.9
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHH
Q 007517 292 DIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDV-TLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACM 370 (600)
Q Consensus 292 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l 370 (600)
++..+-.|.....+.|.+++|..+++...+ +.||.. ....+..++.+.+.+++|....++.... -+.+......+
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~~~~~ 160 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSAREILLE 160 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHHHHHH
Confidence 567777888888888999999999988887 467765 5666777888888999998888888763 23457777888
Q ss_pred HHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHH
Q 007517 371 VDLLGRAGQVEDAMKLIEAM-PFEPD-AIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYIL 435 (600)
Q Consensus 371 i~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 435 (600)
...+.+.|++++|.++|++. .-.|+ ...|..+..++...|+.++|...|+++++...+-...|..
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~ 227 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTR 227 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHH
Confidence 88888899999999998887 22343 7788888888888899999999999888865443344443
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.28 E-value=6.3e-05 Score=70.76 Aligned_cols=181 Identities=14% Similarity=0.048 Sum_probs=126.0
Q ss_pred CchhHhhHHHHHhhhcchHHHHHHHHHHHHcCCC-C-chhhHHHHHHHHHHcCCHHHHHhhhhhcCCC---CH---HHHH
Q 007517 226 NFPSLISVLSVCASLASLDHGRQVHAQLVRCQFD-V-DVYVASVLITMYIKCGELVKGKLIFDNFASK---DI---VMWN 297 (600)
Q Consensus 226 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---~~---~~~~ 297 (600)
....+......+...|+++.|...++.+.+.... + ....+..+...|.+.|++++|...|+.+.+. +. .++.
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 111 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYY 111 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHH
Confidence 3455667777888999999999999999886521 1 1246677889999999999999999988642 12 2455
Q ss_pred HHHHHHHhc--------CChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHH
Q 007517 298 SIISGYAQY--------GLGEKSLKVFHEMFSSGVMPDDV-TLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYA 368 (600)
Q Consensus 298 ~li~~~~~~--------g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~ 368 (600)
.+...+.+. |+.++|++.|+++... .|+.. ....+... . .. .... .....
T Consensus 112 ~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~-~---~~------~~~~---------~~~~~ 170 (235)
T TIGR03302 112 LRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRM-D---YL------RNRL---------AGKEL 170 (235)
T ss_pred HHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHH-H---HH------HHHH---------HHHHH
Confidence 566666654 7889999999999875 55543 22111111 0 00 0000 01123
Q ss_pred HHHHHHhhcCCHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC
Q 007517 369 CMVDLLGRAGQVEDAMKLIEAM----PFEP-DAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEP 427 (600)
Q Consensus 369 ~li~~~~~~g~~~~A~~~~~~m----~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 427 (600)
.+.+.|.+.|++++|...+++. |-.| ....|..+..++...|++++|...++.+....|
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 5677888999999999988877 2233 356788899999999999999998888776555
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.27 E-value=0.00012 Score=66.34 Aligned_cols=156 Identities=11% Similarity=0.105 Sum_probs=113.8
Q ss_pred HHHHHHHcCCHHHHHhhhhhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHH
Q 007517 268 LITMYIKCGELVKGKLIFDNFASKDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEG 347 (600)
Q Consensus 268 li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 347 (600)
-+..|.+.|+++......+.+..+. ..|...++.++++..+++..+.. +.|...|..+...+...|++++|
T Consensus 22 ~~~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A 92 (198)
T PRK10370 22 CVGSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNA 92 (198)
T ss_pred HHHHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHH
Confidence 3456777777776654443322211 01223566678888888877652 45566788888889999999999
Q ss_pred HHHHHHhHhcCCCCCChHHHHHHHHH-HhhcCC--HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 007517 348 REIFESMKSKYLVEPKTEHYACMVDL-LGRAGQ--VEDAMKLIEAM-PFEP-DAIIWGSLLGACRTHMKLDLAEVAAKKL 422 (600)
Q Consensus 348 ~~~~~~~~~~~~~~p~~~~~~~li~~-~~~~g~--~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 422 (600)
...|++..+.. +.+...+..+..+ |.+.|+ .++|.+++++. ...| +...+..+...+...|++++|...++++
T Consensus 93 ~~a~~~Al~l~--P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~a 170 (198)
T PRK10370 93 LLAYRQALQLR--GENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKV 170 (198)
T ss_pred HHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999888742 4468888888886 467777 59999999988 4455 5678888888999999999999999999
Q ss_pred hccCCCCCchHH
Q 007517 423 LQLEPKNAGPYI 434 (600)
Q Consensus 423 ~~~~p~~~~~~~ 434 (600)
+++.|.+..-+.
T Consensus 171 L~l~~~~~~r~~ 182 (198)
T PRK10370 171 LDLNSPRVNRTQ 182 (198)
T ss_pred HhhCCCCccHHH
Confidence 998887754443
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.27 E-value=3.3e-05 Score=79.11 Aligned_cols=189 Identities=19% Similarity=0.180 Sum_probs=137.8
Q ss_pred CCCCchhhHHHHHHHHHHcCCHHHHHhhhhhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 007517 257 QFDVDVYVASVLITMYIKCGELVKGKLIFDNFASKDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLS 336 (600)
Q Consensus 257 ~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 336 (600)
+++|--..-..+...+.++|-...|..+|+++ ..|.-.|..|...|+..+|..+..+-.+ -+||+.-|..+..
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGD 465 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGD 465 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhh
Confidence 34566666677889999999999999999875 4788889999999999999999988877 3888889988888
Q ss_pred HHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHH
Q 007517 337 ACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM-PFEP-DAIIWGSLLGACRTHMKLDL 414 (600)
Q Consensus 337 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~ 414 (600)
......-+++|.++++....+ .-..+.....+.++++++.+.|+.- .+.| ...+|-.+..+..+.++...
T Consensus 466 v~~d~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~ 537 (777)
T KOG1128|consen 466 VLHDPSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQA 537 (777)
T ss_pred hccChHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHH
Confidence 877777788888887765432 1111222223466777777777644 3333 35567777777777777777
Q ss_pred HHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 007517 415 AEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMRKRN 460 (600)
Q Consensus 415 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 460 (600)
|...|.....++|++...++.++.+|.+.|+-.+|...+++..+.+
T Consensus 538 av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn 583 (777)
T KOG1128|consen 538 AVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN 583 (777)
T ss_pred HHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC
Confidence 7777777777777777777777777777777777777777776655
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.23 E-value=1.9e-06 Score=53.43 Aligned_cols=35 Identities=37% Similarity=0.710 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH
Q 007517 294 VMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDD 328 (600)
Q Consensus 294 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 328 (600)
++||+||.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 37999999999999999999999999999999983
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.21 E-value=0.00034 Score=76.02 Aligned_cols=234 Identities=10% Similarity=0.043 Sum_probs=113.8
Q ss_pred CCccchhHHHHHHHhcCCHHHHHHHHHhcccC---ChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCchhHhhHHH
Q 007517 159 KSVVASNSMILGLGQNGEVQKARVVFDQMREK---DDATWSGMIKVYERKGYELEVIDLFTLMQKEGVRVNFPSLISVLS 235 (600)
Q Consensus 159 ~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 235 (600)
.+...+..|++.|...+++++|.++.+...+. ....|-.+...+.+.++..++..+ .+. .
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l---------------~ 91 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLI---------------D 91 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhh---------------h
Confidence 33445556666666666666666666644432 222233333345555554444333 221 1
Q ss_pred HHhhhcchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHhhhhhcCC---CCHHHHHHHHHHHHhcCChHHH
Q 007517 236 VCASLASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFAS---KDIVMWNSIISGYAQYGLGEKS 312 (600)
Q Consensus 236 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A 312 (600)
......++.....+...+... ..+...+..|..+|-+.|+.++|..+++++.+ .|+.+.|.+...|+.. +.++|
T Consensus 92 ~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA 168 (906)
T PRK14720 92 SFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKA 168 (906)
T ss_pred hcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHH
Confidence 111122222222222223221 22333555566666666666666666665543 3555666666666666 66666
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCC
Q 007517 313 LKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAMPF 392 (600)
Q Consensus 313 ~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 392 (600)
++++.+.... +....++..+.+++..+... .+-+...+-.+... +....+.
T Consensus 169 ~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~--~~~d~d~f~~i~~k------------i~~~~~~ 219 (906)
T PRK14720 169 ITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHY--NSDDFDFFLRIERK------------VLGHREF 219 (906)
T ss_pred HHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhc--CcccchHHHHHHHH------------HHhhhcc
Confidence 6666655432 33334555555555555542 11112111111111 1111122
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHH
Q 007517 393 EPDAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYA 441 (600)
Q Consensus 393 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 441 (600)
..-+.++--|-..|....+++++..+++.+++.+|.|..+...++..|.
T Consensus 220 ~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 220 TRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred chhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 2334445555556666666777777777777777666666666666654
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.21 E-value=0.0002 Score=64.93 Aligned_cols=152 Identities=15% Similarity=0.135 Sum_probs=85.3
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhc
Q 007517 298 SIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRA 377 (600)
Q Consensus 298 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 377 (600)
.+-..+...|+.+....+..+.... ..-|............+.|++.+|...|.+... .-++|...|+.+.-.|.+.
T Consensus 71 ~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 71 KLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHHHc
Confidence 3344455555555555555443321 111222333355555566666666666666654 2355566666666666666
Q ss_pred CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHH
Q 007517 378 GQVEDAMKLIEAM-PFEP-DAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAEL 452 (600)
Q Consensus 378 g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 452 (600)
|++++|..-|.+. .+.| ++...+.|...+.-.|+.+.|..++.......+.++..-..|+.+....|++++|..+
T Consensus 148 Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i 224 (257)
T COG5010 148 GRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDI 224 (257)
T ss_pred cChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhh
Confidence 6666666666555 3333 3445566666666666666666666666666665555556666666666666666544
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.20 E-value=0.0011 Score=60.13 Aligned_cols=155 Identities=17% Similarity=0.135 Sum_probs=71.5
Q ss_pred HHHHHHHcCCHHHHHhhhhhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh----ccCC
Q 007517 268 LITMYIKCGELVKGKLIFDNFASKDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACS----YTGK 343 (600)
Q Consensus 268 li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~----~~g~ 343 (600)
-...|.+.|+.++|++.......-+....| +..+.+..+.+-|.+.+++|++ -.+..|.+.|..++. ..+.
T Consensus 114 aa~i~~~~~~~deAl~~~~~~~~lE~~Al~--VqI~lk~~r~d~A~~~lk~mq~---ided~tLtQLA~awv~la~ggek 188 (299)
T KOG3081|consen 114 AAIIYMHDGDFDEALKALHLGENLEAAALN--VQILLKMHRFDLAEKELKKMQQ---IDEDATLTQLAQAWVKLATGGEK 188 (299)
T ss_pred hhHHhhcCCChHHHHHHHhccchHHHHHHH--HHHHHHHHHHHHHHHHHHHHHc---cchHHHHHHHHHHHHHHhccchh
Confidence 334456666666666666553222222222 2333444555666666666654 234445554444432 2234
Q ss_pred HHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCC-HHHHHHHHH
Q 007517 344 VKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM--PFEPDAIIWGSLLGACRTHMK-LDLAEVAAK 420 (600)
Q Consensus 344 ~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~g~-~~~a~~~~~ 420 (600)
+..|.-+|++|..++ +|++.+.+-+.-+....|++++|..++++. ....++.+...++..-...|. .+--.+...
T Consensus 189 ~qdAfyifeE~s~k~--~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~ 266 (299)
T KOG3081|consen 189 IQDAFYIFEELSEKT--PPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLS 266 (299)
T ss_pred hhhHHHHHHHHhccc--CCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHH
Confidence 555555555555432 455555555555555555555555555544 212233333333333222332 233334444
Q ss_pred HHhccCCCC
Q 007517 421 KLLQLEPKN 429 (600)
Q Consensus 421 ~~~~~~p~~ 429 (600)
++....|..
T Consensus 267 QLk~~~p~h 275 (299)
T KOG3081|consen 267 QLKLSHPEH 275 (299)
T ss_pred HHHhcCCcc
Confidence 444444444
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.19 E-value=8.4e-05 Score=76.29 Aligned_cols=210 Identities=14% Similarity=0.060 Sum_probs=164.9
Q ss_pred HHHHHhhhcchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHhhhhhcCC--CCHHHHHHHHHHHHhcCChH
Q 007517 233 VLSVCASLASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFAS--KDIVMWNSIISGYAQYGLGE 310 (600)
Q Consensus 233 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~ 310 (600)
+...+.+.|-...|..+++.+. .+.-.|.+|...|+..+|..+..+-.+ +|...|..+.+......-++
T Consensus 404 laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv~~d~s~yE 474 (777)
T KOG1128|consen 404 LAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDVLHDPSLYE 474 (777)
T ss_pred HHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhhccChHHHH
Confidence 4455666777778888877653 566788999999999999888765544 67888888888888888899
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC
Q 007517 311 KSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM 390 (600)
Q Consensus 311 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 390 (600)
+|.++++.-... .-..+-....+.++++++.+.|+.-.+-+ +....+|-.+.-+..++++++.|.+.|...
T Consensus 475 kawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n--plq~~~wf~~G~~ALqlek~q~av~aF~rc 545 (777)
T KOG1128|consen 475 KAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN--PLQLGTWFGLGCAALQLEKEQAAVKAFHRC 545 (777)
T ss_pred HHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC--ccchhHHHhccHHHHHHhhhHHHHHHHHHH
Confidence 999999875432 11111112233689999999998876643 345788988999999999999999999876
Q ss_pred -CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 007517 391 -PFEPD-AIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMRKRN 460 (600)
Q Consensus 391 -~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 460 (600)
...|| ...|+.+-.+|.+.|+..+|...+.++++-+-.+...+....-...+-|.|++|.+.+.++.+..
T Consensus 546 vtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 546 VTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLR 617 (777)
T ss_pred hhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence 56776 55799999999999999999999999999877777777777777789999999999999997643
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.15 E-value=3.1e-05 Score=65.71 Aligned_cols=97 Identities=18% Similarity=0.293 Sum_probs=75.0
Q ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHH
Q 007517 363 KTEHYACMVDLLGRAGQVEDAMKLIEAM-PFEP-DAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIY 440 (600)
Q Consensus 363 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 440 (600)
+......+...+.+.|++++|.+.++.. ...| +...|..+...+...|+++.|...++++++.+|+++..+..++.+|
T Consensus 16 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~ 95 (135)
T TIGR02552 16 QLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECL 95 (135)
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 3455666777778888888888888776 3334 5667777777888888888888888888888888888888888888
Q ss_pred HhcCCchHHHHHHHHHHhC
Q 007517 441 ASQGRFHDVAELRKNMRKR 459 (600)
Q Consensus 441 ~~~g~~~~a~~~~~~m~~~ 459 (600)
...|++++|.+.++...+.
T Consensus 96 ~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 96 LALGEPESALKALDLAIEI 114 (135)
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 8888888888888877654
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.15 E-value=3.9e-06 Score=51.97 Aligned_cols=35 Identities=23% Similarity=0.404 Sum_probs=32.4
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCc
Q 007517 193 ATWSGMIKVYERKGYELEVIDLFTLMQKEGVRVNF 227 (600)
Q Consensus 193 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 227 (600)
++||++|.+|++.|++++|.++|++|.+.|++||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999999973
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.00028 Score=69.48 Aligned_cols=118 Identities=16% Similarity=0.187 Sum_probs=85.4
Q ss_pred HhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHHH
Q 007517 338 CSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM-PFEPD-AIIWGSLLGACRTHMKLDLA 415 (600)
Q Consensus 338 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a 415 (600)
....|.++.|+..++.+.+. .+.|+.......+.+.+.++.++|.+.++++ ...|+ ...+-.+..++.+.|++.+|
T Consensus 316 ~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~ea 393 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEA 393 (484)
T ss_pred HHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHH
Confidence 34567777777777777764 3445666667777778888888888777776 44565 55667777777777888888
Q ss_pred HHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHHH
Q 007517 416 EVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMR 457 (600)
Q Consensus 416 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 457 (600)
.+.++.....+|++|..|..|+.+|...|+..++...+.++.
T Consensus 394 i~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~ 435 (484)
T COG4783 394 IRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGY 435 (484)
T ss_pred HHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 888777777778877778888888877777777776666554
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.00051 Score=73.91 Aligned_cols=143 Identities=11% Similarity=0.072 Sum_probs=118.0
Q ss_pred CCCchhhHHHHHHHHHHcCCHHHHHhhhhhcCC--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH-HHH
Q 007517 258 FDVDVYVASVLITMYIKCGELVKGKLIFDNFAS--K-DIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVT-LVG 333 (600)
Q Consensus 258 ~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ 333 (600)
.+.++..+-.|.....+.|.+++|..+++...+ | +...+-.+...+.+.+++++|+..+++.... .|+..+ ...
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~~~~ 159 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSAREILL 159 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHHHHH
Confidence 456688888899999999999999999998865 3 5678888999999999999999999999875 677654 555
Q ss_pred HHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHH
Q 007517 334 VLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM--PFEPDAIIWGSLLG 404 (600)
Q Consensus 334 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~ 404 (600)
+..++.+.|..++|..+|+++... .+-+...+..+...+.+.|+.++|...|++. ...|...-|+.++.
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~--~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 230 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQ--HPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRLV 230 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHHH
Confidence 667888999999999999999873 2345889999999999999999999999987 33455555555543
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.0018 Score=63.13 Aligned_cols=225 Identities=11% Similarity=0.033 Sum_probs=132.5
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCccCchh-HhhHHHHHhhhc-chHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHc
Q 007517 198 MIKVYERKGYELEVIDLFTLMQKEGVRVNFPS-LISVLSVCASLA-SLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKC 275 (600)
Q Consensus 198 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~ 275 (600)
+-..+...++.++|+.+..++.+. .|+..| +..--.++...+ .++++...+..+.+.. +.+..+++.....+.+.
T Consensus 43 ~ra~l~~~e~serAL~lt~~aI~l--nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l 119 (320)
T PLN02789 43 FRAVYASDERSPRALDLTADVIRL--NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKL 119 (320)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHc
Confidence 334445566677777777776653 344332 222222333444 4567777777776654 33444555554445555
Q ss_pred CCH--HHHHhhhhhcCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc---CC----
Q 007517 276 GEL--VKGKLIFDNFAS---KDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYT---GK---- 343 (600)
Q Consensus 276 g~~--~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~---g~---- 343 (600)
|+. +++..+++.+.+ +|..+|+...-.+...|+++++++.++++++.... |...|+.....+.+. |.
T Consensus 120 ~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~ 198 (320)
T PLN02789 120 GPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAM 198 (320)
T ss_pred CchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhcccccccccc
Confidence 542 556666666543 57788888888888888899999999998876533 333444433333333 22
Q ss_pred HHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhc----CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcC-------
Q 007517 344 VKEGREIFESMKSKYLVEPKTEHYACMVDLLGRA----GQVEDAMKLIEAM-PFEP-DAIIWGSLLGACRTHM------- 410 (600)
Q Consensus 344 ~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~----g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g------- 410 (600)
.++..++...+... -+-+...|+.+..+|... ++..+|.+++.+. ...| +......|+..|....
T Consensus 199 ~e~el~y~~~aI~~--~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~ 276 (320)
T PLN02789 199 RDSELKYTIDAILA--NPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFR 276 (320)
T ss_pred HHHHHHHHHHHHHh--CCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhh
Confidence 24566666555543 244577788777777763 3456687777765 3334 4666777777776532
Q ss_pred -----------CHHHHHHHHHHHhccCCC
Q 007517 411 -----------KLDLAEVAAKKLLQLEPK 428 (600)
Q Consensus 411 -----------~~~~a~~~~~~~~~~~p~ 428 (600)
..++|..+++.+.+.+|-
T Consensus 277 ~~~~~~~~~~~~~~~a~~~~~~l~~~d~i 305 (320)
T PLN02789 277 DTVDTLAEELSDSTLAQAVCSELEVADPM 305 (320)
T ss_pred hhhhccccccccHHHHHHHHHHHHhhCcH
Confidence 235566666666445553
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.09 E-value=6.1e-05 Score=74.79 Aligned_cols=122 Identities=19% Similarity=0.258 Sum_probs=97.0
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHH
Q 007517 331 LVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM-PFEP-DAIIWGSLLGACRT 408 (600)
Q Consensus 331 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~ 408 (600)
..+++..+...++++.|..+|+++.+. .|+ ....++..|...++-.+|.+++++. ...| +...+......|..
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 345566667778888888888888764 244 4445777777788888888888776 2233 56666666777889
Q ss_pred cCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHHH
Q 007517 409 HMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMR 457 (600)
Q Consensus 409 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 457 (600)
.++++.|+.+++++.+..|++..++..|+.+|...|++++|...++.+-
T Consensus 247 k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 247 KKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred cCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 9999999999999999999999999999999999999999999888774
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.06 E-value=6.5e-06 Score=50.61 Aligned_cols=33 Identities=30% Similarity=0.544 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 007517 294 VMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMP 326 (600)
Q Consensus 294 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 326 (600)
.+||++|.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578999999999999999999999999988887
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.0013 Score=64.99 Aligned_cols=147 Identities=16% Similarity=0.148 Sum_probs=118.5
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH-HHHHhccCCHHHHHHHHHHhHhcCCCCCC-hHHHHH
Q 007517 292 DIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGV-LSACSYTGKVKEGREIFESMKSKYLVEPK-TEHYAC 369 (600)
Q Consensus 292 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l-l~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~ 369 (600)
....+.-..-.+.+.|++++|+..++.+... .||...|..+ ...+...++.++|.+.++.+... .|+ ....-.
T Consensus 305 ~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l---~P~~~~l~~~ 379 (484)
T COG4783 305 GLAAQYGRALQTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALAL---DPNSPLLQLN 379 (484)
T ss_pred chHHHHHHHHHHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc---CCCccHHHHH
Confidence 3444444555667889999999999999875 6776655544 56788999999999999999874 455 666778
Q ss_pred HHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCch
Q 007517 370 MVDLLGRAGQVEDAMKLIEAM--PFEPDAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFH 447 (600)
Q Consensus 370 li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 447 (600)
+.++|.+.|++++|..+++.. ..+-|+..|..|..+|...|+..++... .+..|.-.|+|+
T Consensus 380 ~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A-----------------~AE~~~~~G~~~ 442 (484)
T COG4783 380 LAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLA-----------------RAEGYALAGRLE 442 (484)
T ss_pred HHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHH-----------------HHHHHHhCCCHH
Confidence 899999999999999999987 3345788999999999999998777554 456788899999
Q ss_pred HHHHHHHHHHhCC
Q 007517 448 DVAELRKNMRKRN 460 (600)
Q Consensus 448 ~a~~~~~~m~~~g 460 (600)
+|...+...+++.
T Consensus 443 ~A~~~l~~A~~~~ 455 (484)
T COG4783 443 QAIIFLMRASQQV 455 (484)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999888754
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.00018 Score=71.44 Aligned_cols=127 Identities=12% Similarity=0.111 Sum_probs=88.8
Q ss_pred hHHHHHHHHHHcCCHHHHHhhhhhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccC
Q 007517 264 VASVLITMYIKCGELVKGKLIFDNFASKDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMP-DDVTLVGVLSACSYTG 342 (600)
Q Consensus 264 ~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g 342 (600)
...+|+..+...++++.|..+|+++.+.++..+-.++..+...++-.+|++++++..+. .| +...+..-...|...+
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~--~p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKE--NPQDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcC
Confidence 33445555566678888888888887766666666777777777778888888887754 33 3334444445577778
Q ss_pred CHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCC
Q 007517 343 KVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAMPFEP 394 (600)
Q Consensus 343 ~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p 394 (600)
+.+.|.++.+++... .+.+..+|..|+..|.+.|++++|+-.++.+|..|
T Consensus 249 ~~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~ 298 (395)
T PF09295_consen 249 KYELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSCPMLT 298 (395)
T ss_pred CHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCC
Confidence 888888888887763 23346678888888888888888888888776443
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.00 E-value=1.1e-05 Score=49.55 Aligned_cols=34 Identities=21% Similarity=0.446 Sum_probs=30.5
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCcc
Q 007517 192 DATWSGMIKVYERKGYELEVIDLFTLMQKEGVRV 225 (600)
Q Consensus 192 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 225 (600)
+.+||.+|.+|.+.|+++.|.++|++|.+.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3689999999999999999999999999999887
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.00021 Score=60.48 Aligned_cols=113 Identities=9% Similarity=0.093 Sum_probs=88.2
Q ss_pred HHHHHHHCCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CC
Q 007517 315 VFHEMFSSGVMPDD-VTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM-PF 392 (600)
Q Consensus 315 ~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~ 392 (600)
+|++... ..|+. .....+...+...|++++|.+.|+.+.... +.+...+..+...|.+.|++++|...+++. ..
T Consensus 5 ~~~~~l~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 80 (135)
T TIGR02552 5 TLKDLLG--LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD--PYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL 80 (135)
T ss_pred hHHHHHc--CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4455554 34544 345556667788899999999998887642 456788889999999999999999998877 33
Q ss_pred CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCc
Q 007517 393 EP-DAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAG 431 (600)
Q Consensus 393 ~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 431 (600)
.| +...+..+...+...|+.+.|...+++++++.|++..
T Consensus 81 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 81 DPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 44 5677888888999999999999999999999998844
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.024 Score=55.15 Aligned_cols=123 Identities=16% Similarity=0.172 Sum_probs=87.9
Q ss_pred HHHHHHHHHHcCCHHHHHhhhhhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCH
Q 007517 265 ASVLITMYIKCGELVKGKLIFDNFASKDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKV 344 (600)
Q Consensus 265 ~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 344 (600)
.+.-|.-+...|+...|.++-.+..-||-.-|-..+.+++..+++++-.++... +-.++-|-.++.+|...|..
T Consensus 180 l~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~ 253 (319)
T PF04840_consen 180 LNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNK 253 (319)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCH
Confidence 334455566778888888888888888888899999999999998877765432 22347788888888888888
Q ss_pred HHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 007517 345 KEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAMPFEPDAIIWGSLLGACR 407 (600)
Q Consensus 345 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~ 407 (600)
.+|..+...+. +..-+.+|.++|++.+|.+.--+. .|...+..+...|.
T Consensus 254 ~eA~~yI~k~~-----------~~~rv~~y~~~~~~~~A~~~A~~~---kd~~~L~~i~~~~~ 302 (319)
T PF04840_consen 254 KEASKYIPKIP-----------DEERVEMYLKCGDYKEAAQEAFKE---KDIDLLKQILKRCP 302 (319)
T ss_pred HHHHHHHHhCC-----------hHHHHHHHHHCCCHHHHHHHHHHc---CCHHHHHHHHHHCC
Confidence 88888876521 245678888999998887775553 25555544444433
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.0036 Score=68.33 Aligned_cols=149 Identities=9% Similarity=0.073 Sum_probs=84.7
Q ss_pred hhHhhHHHHHhhhcchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHhhhhhcCCCCHHHHHHHHHHHHhcC
Q 007517 228 PSLISVLSVCASLASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFASKDIVMWNSIISGYAQYG 307 (600)
Q Consensus 228 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g 307 (600)
..+..+..+|.+.|+.+++..+++++++.. +.|+.+.|.+...|+.. ++++|.+++.+.. ..|...+
T Consensus 117 ~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV-----------~~~i~~k 183 (906)
T PRK14720 117 LALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAI-----------YRFIKKK 183 (906)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHH-----------HHHHhhh
Confidence 345555556666666666666666666665 55677777777777777 7777777765542 3366666
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHH
Q 007517 308 LGEKSLKVFHEMFSSGVMPDDVTL-VGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKL 386 (600)
Q Consensus 308 ~~~~A~~~~~~m~~~g~~p~~~t~-~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 386 (600)
++.++.++|.++... .|+...+ ..++ +.+....+..--+.++-.+...|...++++++..+
T Consensus 184 q~~~~~e~W~k~~~~--~~~d~d~f~~i~----------------~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~i 245 (906)
T PRK14720 184 QYVGIEEIWSKLVHY--NSDDFDFFLRIE----------------RKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYI 245 (906)
T ss_pred cchHHHHHHHHHHhc--CcccchHHHHHH----------------HHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHH
Confidence 777888888887764 4443322 2222 22222112222344455555566666666677666
Q ss_pred HHhC-CCCC-CHHHHHHHHHHHH
Q 007517 387 IEAM-PFEP-DAIIWGSLLGACR 407 (600)
Q Consensus 387 ~~~m-~~~p-~~~~~~~ll~~~~ 407 (600)
++.+ ...| |.....-++..|.
T Consensus 246 LK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 246 LKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HHHHHhcCCcchhhHHHHHHHHH
Confidence 6665 3233 3444444444444
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.058 Score=57.49 Aligned_cols=124 Identities=15% Similarity=0.218 Sum_probs=69.4
Q ss_pred HhCCChHHHHHHHhhCCCCCc-chHHHHHHHH--HcCCCHHHHHHHHccCC---CCCcchHHHHHHHHHhcCChHHHHHH
Q 007517 17 VEEGMITEAGTLFWQMPEKNV-VSWTVMLGGF--IRDSRIDDARRLFDMMP---EKDVVAQTNMVLGYCQDGRVDEGREI 90 (600)
Q Consensus 17 ~~~g~~~~A~~~~~~m~~~~~-~~~~~ll~~~--~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~ 90 (600)
...+++..|+..........+ ..|..++.++ .+.|+.++|..+++... ..|..+...+-..|-..|..++|..+
T Consensus 20 ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~ 99 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHL 99 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHH
Confidence 345666777776666553222 2344444444 36677777777666554 23556666677777777777777777
Q ss_pred HhhCCC--CCcccHHHHHHHHHhCCChHH----HHHHHhhcCCCCcchHHHHHHHHh
Q 007517 91 FDEMPK--KNVISWTTMISGYVNNNRIDV----ARKLFEVMPEKNEVSWTAMLMGYT 141 (600)
Q Consensus 91 ~~~m~~--~~~~~~~~li~~~~~~g~~~~----A~~~~~~m~~p~~~t~~~ll~~~~ 141 (600)
+++... |+..-...+..+|++-+.+.+ |+++++... .+.+.|-++++...
T Consensus 100 Ye~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~p-k~~yyfWsV~Slil 155 (932)
T KOG2053|consen 100 YERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFP-KRAYYFWSVISLIL 155 (932)
T ss_pred HHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-cccchHHHHHHHHH
Confidence 777665 443344445556666655543 444444221 23445555555443
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00057 Score=58.64 Aligned_cols=114 Identities=18% Similarity=0.195 Sum_probs=55.4
Q ss_pred cCCHHHHHHHHHHhHhcCCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHHcCCHHH
Q 007517 341 TGKVKEGREIFESMKSKYLVEP-KTEHYACMVDLLGRAGQVEDAMKLIEAM-PFEPDA----IIWGSLLGACRTHMKLDL 414 (600)
Q Consensus 341 ~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~----~~~~~ll~~~~~~g~~~~ 414 (600)
.++...+...++.+.+.++-.| .....-.+...+...|++++|...|+.. ...||. .....|...+...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 4555555555555555431110 0122223445555566666666666555 111222 223334455555666666
Q ss_pred HHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHH
Q 007517 415 AEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKN 455 (600)
Q Consensus 415 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 455 (600)
|+..++.. .-.+-.+..+..++++|...|++++|...|+.
T Consensus 104 Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 104 ALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 66665442 12222334455566666666666666666553
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.005 Score=55.64 Aligned_cols=161 Identities=16% Similarity=0.210 Sum_probs=108.1
Q ss_pred HHHHHHcCCHHHHHhhhhhcCCC-----CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC
Q 007517 269 ITMYIKCGELVKGKLIFDNFASK-----DIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGK 343 (600)
Q Consensus 269 i~~y~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 343 (600)
+-+...+|+.+.|..+++.+..+ -+.-..+| -+-..|++++|+++++...+.. +.|.+++.-=+...-..|+
T Consensus 59 ~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam--~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK 135 (289)
T KOG3060|consen 59 FIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAM--LLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGK 135 (289)
T ss_pred HHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHH--HHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCC
Confidence 33444456666666665554331 11111111 2334688889999999988874 4455566555555556677
Q ss_pred HHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHc---CCHHHHHHH
Q 007517 344 VKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM-PFEP-DAIIWGSLLGACRTH---MKLDLAEVA 418 (600)
Q Consensus 344 ~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~---g~~~~a~~~ 418 (600)
--+|++-+....+. +..|.+.|.-+.++|...|++++|.--++++ -+.| ++..+..+...+... .+.+.|...
T Consensus 136 ~l~aIk~ln~YL~~--F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arky 213 (289)
T KOG3060|consen 136 NLEAIKELNEYLDK--FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKY 213 (289)
T ss_pred cHHHHHHHHHHHHH--hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 77888887777775 4788999999999999999999999999988 3345 455555665554433 367888999
Q ss_pred HHHHhccCCCCCchHH
Q 007517 419 AKKLLQLEPKNAGPYI 434 (600)
Q Consensus 419 ~~~~~~~~p~~~~~~~ 434 (600)
+.+++++.|.+.....
T Consensus 214 y~~alkl~~~~~ral~ 229 (289)
T KOG3060|consen 214 YERALKLNPKNLRALF 229 (289)
T ss_pred HHHHHHhChHhHHHHH
Confidence 9999999996544333
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.82 E-value=2.2e-05 Score=46.96 Aligned_cols=31 Identities=48% Similarity=0.798 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 007517 294 VMWNSIISGYAQYGLGEKSLKVFHEMFSSGV 324 (600)
Q Consensus 294 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 324 (600)
++||+||++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4788899999999999999999999988764
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00019 Score=55.93 Aligned_cols=92 Identities=23% Similarity=0.308 Sum_probs=71.0
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcC
Q 007517 367 YACMVDLLGRAGQVEDAMKLIEAM-PFEP-DAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQG 444 (600)
Q Consensus 367 ~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 444 (600)
+..+...+.+.|++++|...+++. ...| +...+..+...+...|+++.|...+++.....|.++..+..++.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 455667777788888888888776 3334 34667777777888888888888888888888888777888888888888
Q ss_pred CchHHHHHHHHHHh
Q 007517 445 RFHDVAELRKNMRK 458 (600)
Q Consensus 445 ~~~~a~~~~~~m~~ 458 (600)
++++|...++...+
T Consensus 83 ~~~~a~~~~~~~~~ 96 (100)
T cd00189 83 KYEEALEAYEKALE 96 (100)
T ss_pred hHHHHHHHHHHHHc
Confidence 88888888877654
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.0047 Score=56.20 Aligned_cols=243 Identities=11% Similarity=0.080 Sum_probs=146.6
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCccCchhHhhHHHHHhhhcchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCH
Q 007517 199 IKVYERKGYELEVIDLFTLMQKEGVRVNFPSLISVLSVCASLASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGEL 278 (600)
Q Consensus 199 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~ 278 (600)
|+-+.-.|.+..++..-...... +-+...-.-+.+++...|....... .+.... .|.......+......-++.
T Consensus 15 iRn~fY~Gnyq~~ine~~~~~~~--~~~~e~d~y~~raylAlg~~~~~~~---eI~~~~-~~~lqAvr~~a~~~~~e~~~ 88 (299)
T KOG3081|consen 15 IRNYFYLGNYQQCINEAEKFSSS--KTDVELDVYMYRAYLALGQYQIVIS---EIKEGK-ATPLQAVRLLAEYLELESNK 88 (299)
T ss_pred HHHHHHhhHHHHHHHHHHhhccc--cchhHHHHHHHHHHHHccccccccc---cccccc-CChHHHHHHHHHHhhCcchh
Confidence 45566677777776655444332 1333344445556655555433221 122111 22222222222222223333
Q ss_pred HHHH-hhhhhcCCC----CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHH
Q 007517 279 VKGK-LIFDNFASK----DIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFES 353 (600)
Q Consensus 279 ~~A~-~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 353 (600)
++-. ++.+.+..+ +.+....-...|...|++++|++..+.. ...+....+ ...+.+..+.+-|.+.++.
T Consensus 89 ~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~----~~lE~~Al~--VqI~lk~~r~d~A~~~lk~ 162 (299)
T KOG3081|consen 89 KSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG----ENLEAAALN--VQILLKMHRFDLAEKELKK 162 (299)
T ss_pred HHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc----chHHHHHHH--HHHHHHHHHHHHHHHHHHH
Confidence 3322 222333222 2222223344578889999999988762 122222222 2234456788999999999
Q ss_pred hHhcCCCCCChHHHHHHHHHHhh----cCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC
Q 007517 354 MKSKYLVEPKTEHYACMVDLLGR----AGQVEDAMKLIEAM--PFEPDAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEP 427 (600)
Q Consensus 354 ~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 427 (600)
|..- .+..+.+.|..++.+ .+.+.+|.-+|++| +..|+..+.+-...++...|++++|+.+++.++..++
T Consensus 163 mq~i----ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~ 238 (299)
T KOG3081|consen 163 MQQI----DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDA 238 (299)
T ss_pred HHcc----chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccC
Confidence 8762 345566666666544 45789999999999 4678999999999999999999999999999999999
Q ss_pred CCCchHHHHHHHHHhcCCchHHHH-HHHHHH
Q 007517 428 KNAGPYILLSNIYASQGRFHDVAE-LRKNMR 457 (600)
Q Consensus 428 ~~~~~~~~l~~~~~~~g~~~~a~~-~~~~m~ 457 (600)
++|.+...++-.-...|+-.++.+ ....++
T Consensus 239 ~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk 269 (299)
T KOG3081|consen 239 KDPETLANLIVLALHLGKDAEVTERNLSQLK 269 (299)
T ss_pred CCHHHHHHHHHHHHHhCCChHHHHHHHHHHH
Confidence 998888888877778887766553 344443
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.75 E-value=3.1e-05 Score=59.37 Aligned_cols=78 Identities=23% Similarity=0.332 Sum_probs=47.7
Q ss_pred cCCHHHHHHHHHhC----CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHH
Q 007517 377 AGQVEDAMKLIEAM----PFEPDAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAEL 452 (600)
Q Consensus 377 ~g~~~~A~~~~~~m----~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 452 (600)
.|++++|..+++++ +..|+...|..+..++.+.|++++|..++++ .+.+|.++.....++.+|...|++++|.++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 35566666666655 2112344555566677777777777777766 555565555555667777777777777777
Q ss_pred HHH
Q 007517 453 RKN 455 (600)
Q Consensus 453 ~~~ 455 (600)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 654
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.056 Score=55.85 Aligned_cols=208 Identities=9% Similarity=0.080 Sum_probs=127.1
Q ss_pred ChHHHHHHHhhCCCCCcchHHHHHHHHHcCCCHHHHHHHHccCCC-CCcchHHHHHHH----------HHhcCChHHHHH
Q 007517 21 MITEAGTLFWQMPEKNVVSWTVMLGGFIRDSRIDDARRLFDMMPE-KDVVAQTNMVLG----------YCQDGRVDEGRE 89 (600)
Q Consensus 21 ~~~~A~~~~~~m~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~-~~~~~~~~li~~----------~~~~g~~~~A~~ 89 (600)
.+++|.++.+. .|.+..|..|...-.+.-.++-|...|-+... +.+..-..|-.. -+--|++++|++
T Consensus 678 gledA~qfiEd--nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek 755 (1189)
T KOG2041|consen 678 GLEDAIQFIED--NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEK 755 (1189)
T ss_pred chHHHHHHHhc--CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhh
Confidence 35556655554 46777888888777776777777777766552 222111111111 112489999999
Q ss_pred HHhhCCCCCcccHHHHHHHHHhCCChHHHHHHHhhcCC--C---CcchHHHHHHHHhcCCChHHHHHHHhhCCCCCccch
Q 007517 90 IFDEMPKKNVISWTTMISGYVNNNRIDVARKLFEVMPE--K---NEVSWTAMLMGYTQCGRIQDAWELFKAMPMKSVVAS 164 (600)
Q Consensus 90 ~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--p---~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 164 (600)
++-.|.++|. .|..+.+.|++-...++++.--. . -...+..+...++....++.|.+.+..... .
T Consensus 756 ~yld~drrDL-----Aielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~-----~ 825 (1189)
T KOG2041|consen 756 LYLDADRRDL-----AIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD-----T 825 (1189)
T ss_pred hhhccchhhh-----hHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-----h
Confidence 9999888774 45667777888777777765433 1 134677788888888888888887766431 1
Q ss_pred hHHHHHHHhcCCHHHHHHHHHhcccCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCchhHhhHHHHHhhhcchH
Q 007517 165 NSMILGLGQNGEVQKARVVFDQMREKDDATWSGMIKVYERKGYELEVIDLFTLMQKEGVRVNFPSLISVLSVCASLASLD 244 (600)
Q Consensus 165 ~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 244 (600)
...+.+|.+..++++-+.+-..+++. ....-.|...+...|.-++|.+.|-+- + .| -..+..|..++.+.
T Consensus 826 e~~~ecly~le~f~~LE~la~~Lpe~-s~llp~~a~mf~svGMC~qAV~a~Lr~---s-~p-----kaAv~tCv~LnQW~ 895 (1189)
T KOG2041|consen 826 ENQIECLYRLELFGELEVLARTLPED-SELLPVMADMFTSVGMCDQAVEAYLRR---S-LP-----KAAVHTCVELNQWG 895 (1189)
T ss_pred HhHHHHHHHHHhhhhHHHHHHhcCcc-cchHHHHHHHHHhhchHHHHHHHHHhc---c-Cc-----HHHHHHHHHHHHHH
Confidence 23566666666677666666666653 334445666677777777776655322 1 11 12345566666665
Q ss_pred HHHHHH
Q 007517 245 HGRQVH 250 (600)
Q Consensus 245 ~a~~~~ 250 (600)
+|.++-
T Consensus 896 ~avela 901 (1189)
T KOG2041|consen 896 EAVELA 901 (1189)
T ss_pred HHHHHH
Confidence 555443
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00044 Score=68.97 Aligned_cols=97 Identities=15% Similarity=0.094 Sum_probs=53.9
Q ss_pred HHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHH
Q 007517 337 ACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM-PFEP-DAIIWGSLLGACRTHMKLDL 414 (600)
Q Consensus 337 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~ 414 (600)
.+...|++++|.+.|.++.+.. +.+...|..+..+|.+.|++++|...++++ .+.| +...|..+..+|...|+++.
T Consensus 11 ~a~~~~~~~~Ai~~~~~Al~~~--P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~e 88 (356)
T PLN03088 11 EAFVDDDFALAVDLYTQAIDLD--PNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQT 88 (356)
T ss_pred HHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHH
Confidence 3444566666666666665431 233555555566666666666666666555 3333 34455555555666666666
Q ss_pred HHHHHHHHhccCCCCCchHHH
Q 007517 415 AEVAAKKLLQLEPKNAGPYIL 435 (600)
Q Consensus 415 a~~~~~~~~~~~p~~~~~~~~ 435 (600)
|...++++++++|+++.....
T Consensus 89 A~~~~~~al~l~P~~~~~~~~ 109 (356)
T PLN03088 89 AKAALEKGASLAPGDSRFTKL 109 (356)
T ss_pred HHHHHHHHHHhCCCCHHHHHH
Confidence 666666666666665444333
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.0034 Score=56.70 Aligned_cols=162 Identities=18% Similarity=0.222 Sum_probs=127.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHH
Q 007517 295 MWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVL-SACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDL 373 (600)
Q Consensus 295 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll-~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 373 (600)
.|..++-+....|+.+.|...++++..+ + |.+.-...+= .-+-..|.+++|.++++.+.++. +.|..+|---+-+
T Consensus 54 l~EqV~IAAld~~~~~lAq~C~~~L~~~-f-p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd--pt~~v~~KRKlAi 129 (289)
T KOG3060|consen 54 LYEQVFIAALDTGRDDLAQKCINQLRDR-F-PGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD--PTDTVIRKRKLAI 129 (289)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHh-C-CCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC--cchhHHHHHHHHH
Confidence 3445566667789999999999999876 3 6554322221 12345689999999999999863 5567788877888
Q ss_pred HhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCC---chH
Q 007517 374 LGRAGQVEDAMKLIEAM--PFEPDAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGR---FHD 448 (600)
Q Consensus 374 ~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~---~~~ 448 (600)
.-..|+.-+|.+-+... .+..|...|.-|...|...|+++.|.-.+++++=..|.+|..+..++..+...|- .+-
T Consensus 130 lka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~ 209 (289)
T KOG3060|consen 130 LKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLEL 209 (289)
T ss_pred HHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHH
Confidence 88888888888877766 5567999999999999999999999999999999999999999999999877664 456
Q ss_pred HHHHHHHHHhCC
Q 007517 449 VAELRKNMRKRN 460 (600)
Q Consensus 449 a~~~~~~m~~~g 460 (600)
+++++.+..+..
T Consensus 210 arkyy~~alkl~ 221 (289)
T KOG3060|consen 210 ARKYYERALKLN 221 (289)
T ss_pred HHHHHHHHHHhC
Confidence 777777776643
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00043 Score=57.01 Aligned_cols=93 Identities=20% Similarity=0.122 Sum_probs=45.1
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC---CchHHHHHH
Q 007517 367 YACMVDLLGRAGQVEDAMKLIEAM-PFEPD----AIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKN---AGPYILLSN 438 (600)
Q Consensus 367 ~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~ 438 (600)
+..++..+.+.|++++|.+.|+.+ ...|+ ...+..+...+...|+++.|...++.+....|++ +..+..++.
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 334444445555555555555444 11121 2233444455555555555555555555554443 233445555
Q ss_pred HHHhcCCchHHHHHHHHHHhC
Q 007517 439 IYASQGRFHDVAELRKNMRKR 459 (600)
Q Consensus 439 ~~~~~g~~~~a~~~~~~m~~~ 459 (600)
++...|++++|.+.++.+.+.
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHH
Confidence 555555555555555555443
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.0025 Score=54.63 Aligned_cols=123 Identities=17% Similarity=0.187 Sum_probs=73.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCC--hHHHHH
Q 007517 296 WNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDD----VTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPK--TEHYAC 369 (600)
Q Consensus 296 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~ 369 (600)
|..++..+ ..++...+...++.+.... |+. .....+...+...|++++|...|+.+.... ..|. ....-.
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~--~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~-~d~~l~~~a~l~ 90 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDY--PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANA-PDPELKPLARLR 90 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHC--CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-CCHHHHHHHHHH
Confidence 44444444 3666677777777776642 222 122233455666777777777777776642 1121 123344
Q ss_pred HHHHHhhcCCHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 007517 370 MVDLLGRAGQVEDAMKLIEAMPFE-PDAIIWGSLLGACRTHMKLDLAEVAAKKL 422 (600)
Q Consensus 370 li~~~~~~g~~~~A~~~~~~m~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 422 (600)
|...+...|++++|+..++..+-. .....+..+...+...|+.++|...|+++
T Consensus 91 LA~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 91 LARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 567777777777777777765211 23445566667777778888877777765
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00071 Score=55.63 Aligned_cols=103 Identities=13% Similarity=0.069 Sum_probs=66.3
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHhcCCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHH
Q 007517 331 LVGVLSACSYTGKVKEGREIFESMKSKYLVEP-KTEHYACMVDLLGRAGQVEDAMKLIEAM-PFEPD----AIIWGSLLG 404 (600)
Q Consensus 331 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~ 404 (600)
+..+...+...|++++|.+.|..+...+.-.+ ....+..+...+.+.|++++|.+.++.+ ...|+ ...+..+..
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 33444555666777777777766665421111 1345556777777777777777777765 22232 455777777
Q ss_pred HHHHcCCHHHHHHHHHHHhccCCCCCchH
Q 007517 405 ACRTHMKLDLAEVAAKKLLQLEPKNAGPY 433 (600)
Q Consensus 405 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 433 (600)
++...|+.+.|...++++++..|+++...
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 113 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKRYPGSSAAK 113 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHHCcCChhHH
Confidence 78888888888888888888888775433
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.69 E-value=4.7e-05 Score=45.48 Aligned_cols=31 Identities=26% Similarity=0.519 Sum_probs=24.6
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHcCC
Q 007517 193 ATWSGMIKVYERKGYELEVIDLFTLMQKEGV 223 (600)
Q Consensus 193 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 223 (600)
++||+||++|.+.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4688888888888888888888888877663
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.0001 Score=53.97 Aligned_cols=64 Identities=23% Similarity=0.257 Sum_probs=57.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcC-CchHHHHHHHHHHh
Q 007517 395 DAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQG-RFHDVAELRKNMRK 458 (600)
Q Consensus 395 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~a~~~~~~m~~ 458 (600)
++.+|..+...+...|++++|+..|+++++++|+++..+..++.+|...| ++++|.+.+++..+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 56788888999999999999999999999999999999999999999999 79999999887764
|
... |
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.0024 Score=66.58 Aligned_cols=139 Identities=13% Similarity=0.047 Sum_probs=74.0
Q ss_pred CCCHHHHHHHHHHHHhc--C---ChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhcc--------CCHHHHHHHHHHhH
Q 007517 290 SKDIVMWNSIISGYAQY--G---LGEKSLKVFHEMFSSGVMPDDV-TLVGVLSACSYT--------GKVKEGREIFESMK 355 (600)
Q Consensus 290 ~~~~~~~~~li~~~~~~--g---~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~--------g~~~~a~~~~~~~~ 355 (600)
..|...|...+.|.... + ...+|..+|++..+. .|+.. .+..+..++... +++..+.+......
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 35777888887775432 2 366888888888874 67653 333322222111 11222222222222
Q ss_pred hcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCC
Q 007517 356 SKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM-PFEPDAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNA 430 (600)
Q Consensus 356 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 430 (600)
.....+.+...|.++.-.+...|++++|...++++ ...|+...|..+...+...|+.++|...+++++.++|.++
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~p 487 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGEN 487 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Confidence 11112223455555555555556666666666655 4455555566666666666666666666666666666654
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00033 Score=64.82 Aligned_cols=92 Identities=23% Similarity=0.221 Sum_probs=72.1
Q ss_pred HHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHH
Q 007517 337 ACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM-PFEPD-AIIWGSLLGACRTHMKLDL 414 (600)
Q Consensus 337 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~ 414 (600)
-..+.+++++|...|....+- .+-|...|..-..+|.+.|.++.|.+-.+.. .+.|. ...|..|..+|...|++++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l--~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIEL--DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhc--CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHH
Confidence 355678888888888888762 2345677777788888888888888887776 55564 5578888888888888888
Q ss_pred HHHHHHHHhccCCCCC
Q 007517 415 AEVAAKKLLQLEPKNA 430 (600)
Q Consensus 415 a~~~~~~~~~~~p~~~ 430 (600)
|++.|+++++++|++.
T Consensus 168 A~~aykKaLeldP~Ne 183 (304)
T KOG0553|consen 168 AIEAYKKALELDPDNE 183 (304)
T ss_pred HHHHHHhhhccCCCcH
Confidence 8888888888888885
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00077 Score=59.78 Aligned_cols=82 Identities=20% Similarity=0.143 Sum_probs=64.3
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHH
Q 007517 364 TEHYACMVDLLGRAGQVEDAMKLIEAM-PFEPD----AIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSN 438 (600)
Q Consensus 364 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 438 (600)
...+..+...|.+.|++++|...|++. ...|+ ...|..+...+...|+++.|...++++++..|+++..+..++.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 114 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 445677777788888888888888766 22222 3567888888888999999999999999999988888888888
Q ss_pred HHHhcCC
Q 007517 439 IYASQGR 445 (600)
Q Consensus 439 ~~~~~g~ 445 (600)
+|...|+
T Consensus 115 ~~~~~g~ 121 (172)
T PRK02603 115 IYHKRGE 121 (172)
T ss_pred HHHHcCC
Confidence 8888776
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.0028 Score=61.00 Aligned_cols=143 Identities=18% Similarity=0.238 Sum_probs=105.6
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHH
Q 007517 294 VMWNSIISGYAQYGLGEKSLKVFHEMFSSG-VMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVD 372 (600)
Q Consensus 294 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 372 (600)
.+|-.++...-+.+..+.|..+|.+.++.+ ...+.....+.+. +...++.+.|.++|+...+.+ +.+...|...++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E-~~~~~d~~~A~~Ife~glk~f--~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALME-YYCNKDPKRARKIFERGLKKF--PSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHH-HHTCS-HHHHHHHHHHHHHHH--TT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHH
Confidence 468888888888888999999999998543 2233333333333 333577788999999999864 567889999999
Q ss_pred HHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHH
Q 007517 373 LLGRAGQVEDAMKLIEAM-PFEPD----AIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIY 440 (600)
Q Consensus 373 ~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 440 (600)
.+.+.|+.+.|..+|++. ..-|. ...|...+.--.+.|+.+....+.+++.+.-|++ .....+.+-|
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~-~~~~~f~~ry 150 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPED-NSLELFSDRY 150 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS--HHHHHHCCT
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhh-hHHHHHHHHh
Confidence 999999999999999987 22333 3589999999999999999999999999988875 3444444444
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00064 Score=62.92 Aligned_cols=96 Identities=18% Similarity=0.216 Sum_probs=76.4
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCC-hHHHHHHHHHHhhcC
Q 007517 301 SGYAQYGLGEKSLKVFHEMFSSGVMPD-DVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPK-TEHYACMVDLLGRAG 378 (600)
Q Consensus 301 ~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g 378 (600)
.-..+.+++.+|+..|.+.++. .|+ .+-|..=..||++.|.++.|.+-.+.... +.|. ...|..|..+|...|
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l--~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~---iDp~yskay~RLG~A~~~~g 163 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIEL--DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALS---IDPHYSKAYGRLGLAYLALG 163 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhc--CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHh---cChHHHHHHHHHHHHHHccC
Confidence 3467788999999999999874 554 45566667889999999999988887765 3454 678999999999999
Q ss_pred CHHHHHHHHHhC-CCCCCHHHHHH
Q 007517 379 QVEDAMKLIEAM-PFEPDAIIWGS 401 (600)
Q Consensus 379 ~~~~A~~~~~~m-~~~p~~~~~~~ 401 (600)
++++|.+.|++. .+.|+..+|..
T Consensus 164 k~~~A~~aykKaLeldP~Ne~~K~ 187 (304)
T KOG0553|consen 164 KYEEAIEAYKKALELDPDNESYKS 187 (304)
T ss_pred cHHHHHHHHHhhhccCCCcHHHHH
Confidence 999999998887 77887776544
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.069 Score=52.06 Aligned_cols=112 Identities=14% Similarity=0.210 Sum_probs=88.1
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 007517 328 DVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAMPFEPDAIIWGSLLGACR 407 (600)
Q Consensus 328 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~ 407 (600)
..+.+..+.-|...|....|.++-. ++.+ |+..-|...+.+|+..|+|++-.++... +..+.-|...+.+|.
T Consensus 177 ~~Sl~~Ti~~li~~~~~k~A~kl~k----~Fkv-~dkrfw~lki~aLa~~~~w~eL~~fa~s---kKsPIGyepFv~~~~ 248 (319)
T PF04840_consen 177 GLSLNDTIRKLIEMGQEKQAEKLKK----EFKV-PDKRFWWLKIKALAENKDWDELEKFAKS---KKSPIGYEPFVEACL 248 (319)
T ss_pred cCCHHHHHHHHHHCCCHHHHHHHHH----HcCC-cHHHHHHHHHHHHHhcCCHHHHHHHHhC---CCCCCChHHHHHHHH
Confidence 3456666777788888887777644 4555 8899999999999999999998887654 345678899999999
Q ss_pred HcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHH
Q 007517 408 THMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNM 456 (600)
Q Consensus 408 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 456 (600)
..|+..+|..+..++ .+..-...|.+.|+|.+|.+.--+.
T Consensus 249 ~~~~~~eA~~yI~k~---------~~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 249 KYGNKKEASKYIPKI---------PDEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred HCCCHHHHHHHHHhC---------ChHHHHHHHHHCCCHHHHHHHHHHc
Confidence 999999999888772 2356778899999999998764443
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00023 Score=51.32 Aligned_cols=57 Identities=25% Similarity=0.317 Sum_probs=42.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007517 402 LLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMRK 458 (600)
Q Consensus 402 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 458 (600)
+...+...|++++|...++++++..|+++..+..++.++...|++++|..+++++.+
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345566777788888888888887787777777788888888888888877777754
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.0009 Score=59.11 Aligned_cols=94 Identities=13% Similarity=-0.047 Sum_probs=76.5
Q ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHH
Q 007517 363 KTEHYACMVDLLGRAGQVEDAMKLIEAM-PFEPD----AIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLS 437 (600)
Q Consensus 363 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 437 (600)
....|..++..+...|++++|...|++. .+.|+ ..+|..+...+...|++++|...+++++++.|..+..+..++
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la 113 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHH
Confidence 3566777888888899999999998877 33332 347888889999999999999999999999999888888888
Q ss_pred HHHH-------hcCCchHHHHHHHHH
Q 007517 438 NIYA-------SQGRFHDVAELRKNM 456 (600)
Q Consensus 438 ~~~~-------~~g~~~~a~~~~~~m 456 (600)
.+|. ..|++++|...+++.
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 8888 788888776666544
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.11 Score=51.15 Aligned_cols=132 Identities=17% Similarity=0.157 Sum_probs=100.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHH-HHHHH
Q 007517 294 VMWNSIISGYAQYGLGEKSLKVFHEMFSSG-VMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEH-YACMV 371 (600)
Q Consensus 294 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~-~~~li 371 (600)
..|...+..-.+..-.+.|..+|-+..+.| +.|+...+++++.-++ .|+..-|..+|+.-...+ ||... -+-.+
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f---~d~~~y~~kyl 473 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKF---PDSTLYKEKYL 473 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhC---CCchHHHHHHH
Confidence 467777777777777888888999998888 6677778888887655 578888888888766643 44333 35567
Q ss_pred HHHhhcCCHHHHHHHHHhC--CCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC
Q 007517 372 DLLGRAGQVEDAMKLIEAM--PFEPD--AIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKN 429 (600)
Q Consensus 372 ~~~~~~g~~~~A~~~~~~m--~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 429 (600)
..+.+.++-+.|..+|+.. .+..+ ..+|..++.--..-|+...+..+-+++.++-|..
T Consensus 474 ~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQe 535 (660)
T COG5107 474 LFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQE 535 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcH
Confidence 7778888888999999855 22333 5678888888888898888888888888888765
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.044 Score=52.81 Aligned_cols=274 Identities=16% Similarity=0.173 Sum_probs=186.3
Q ss_pred hcCCHHHHHHHHHhcc---cCChhhHHHHHHH--HHHcCChHHHHHHHHHHHHcCCccCchhHhhHHHHHhhhcchHHHH
Q 007517 173 QNGEVQKARVVFDQMR---EKDDATWSGMIKV--YERKGYELEVIDLFTLMQKEGVRVNFPSLISVLSVCASLASLDHGR 247 (600)
Q Consensus 173 ~~g~~~~A~~~f~~~~---~~~~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~ 247 (600)
-.|+-..|+++-.+-. ..|....-.++.+ -.-.|+++.|.+-|+.|... ...-..-+..+.-..-+.|+.+.|+
T Consensus 96 gAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d-PEtRllGLRgLyleAqr~GareaAr 174 (531)
T COG3898 96 GAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD-PETRLLGLRGLYLEAQRLGAREAAR 174 (531)
T ss_pred ccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC-hHHHHHhHHHHHHHHHhcccHHHHH
Confidence 4678888887766544 3355555555543 34579999999999999762 1111122333444445778888888
Q ss_pred HHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHhhhhhcCC-----CCHH--HHHHHHHHHHh---cCChHHHHHHHH
Q 007517 248 QVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFAS-----KDIV--MWNSIISGYAQ---YGLGEKSLKVFH 317 (600)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~~~--~~~~li~~~~~---~g~~~~A~~~~~ 317 (600)
++-+..-..- +.-.....+.+...+..|+++.|+++.+.-.. +++. .--.|+.+-+. .-+...|...-.
T Consensus 175 ~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~ 253 (531)
T COG3898 175 HYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDAL 253 (531)
T ss_pred HHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHH
Confidence 8887776654 33456778899999999999999999986543 4442 23344443332 235666776666
Q ss_pred HHHHCCCCCCHHH-HHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHH--HHHH--HHHhCCC
Q 007517 318 EMFSSGVMPDDVT-LVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVE--DAMK--LIEAMPF 392 (600)
Q Consensus 318 ~m~~~g~~p~~~t-~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~--~A~~--~~~~m~~ 392 (600)
+..+ +.||-+- -.....++.+.|++.++-.+++.+-+. .|.+..+...+ +.|.|+.. ...+ -++.|
T Consensus 254 ~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~---ePHP~ia~lY~--~ar~gdta~dRlkRa~~L~sl-- 324 (531)
T COG3898 254 EANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKA---EPHPDIALLYV--RARSGDTALDRLKRAKKLESL-- 324 (531)
T ss_pred HHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhc---CCChHHHHHHH--HhcCCCcHHHHHHHHHHHHhc--
Confidence 6554 6777653 334457888999999999999998764 57666654433 45666532 2222 23344
Q ss_pred CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhc-CCchHHHHHHHHHHh
Q 007517 393 EP-DAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQ-GRFHDVAELRKNMRK 458 (600)
Q Consensus 393 ~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~a~~~~~~m~~ 458 (600)
+| +..+..++..+-...|++..|..-.+.+....|.. ..|..|+++-... |+-.++...+.+..+
T Consensus 325 k~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pre-s~~lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 325 KPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRE-SAYLLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred CccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchh-hHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence 45 45667777888889999999999999999999987 7888898887655 999999888776654
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0016 Score=50.48 Aligned_cols=62 Identities=26% Similarity=0.260 Sum_probs=29.8
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC
Q 007517 366 HYACMVDLLGRAGQVEDAMKLIEAM-PFEP-DAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEP 427 (600)
Q Consensus 366 ~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 427 (600)
.+..+...|...|++++|.+.++.. ...| +..++..+...+...|+.+.|...++++.+..|
T Consensus 36 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 36 AYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDP 99 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhHHHHHHHHHHHHccCC
Confidence 3444444444445555555544443 1112 223445555555555555555555555555444
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0049 Score=54.59 Aligned_cols=131 Identities=15% Similarity=0.157 Sum_probs=87.1
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHH
Q 007517 292 DIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPD--DVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYAC 369 (600)
Q Consensus 292 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ 369 (600)
....+..+...|...|++++|+..|++.......|+ ...+..+...+.+.|++++|...+.+..+.. +.+...+..
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~ 111 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN--PKQPSALNN 111 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cccHHHHHH
Confidence 445677777778888888888888888876433332 2456666777778888888888888776632 234556666
Q ss_pred HHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCC
Q 007517 370 MVDLLGRAGQVEDAMKLIEAMPFEPDAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGR 445 (600)
Q Consensus 370 li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 445 (600)
+..+|...|+...+..-++.. ...+++|..+++++++.+|++ |..+...+...|+
T Consensus 112 lg~~~~~~g~~~~a~~~~~~A------------------~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 112 IAVIYHKRGEKAEEAGDQDEA------------------EALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHHcCChHhHhhCHHHH------------------HHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence 777777777666555333221 112677888999999999876 5555555555554
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.0045 Score=52.63 Aligned_cols=89 Identities=8% Similarity=0.049 Sum_probs=76.8
Q ss_pred HHHHHhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCch
Q 007517 370 MVDLLGRAGQVEDAMKLIEAM-PFE-PDAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFH 447 (600)
Q Consensus 370 li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 447 (600)
...-+-..|++++|..+|.-+ -.. -+..-|..|..+|...++++.|...+..+..++++||.++...+..|...|+.+
T Consensus 43 ~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~ 122 (165)
T PRK15331 43 HAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAA 122 (165)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHH
Confidence 344456789999999999876 112 356678888889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh
Q 007517 448 DVAELRKNMRK 458 (600)
Q Consensus 448 ~a~~~~~~m~~ 458 (600)
+|+..|+...+
T Consensus 123 ~A~~~f~~a~~ 133 (165)
T PRK15331 123 KARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHh
Confidence 99999998766
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.00059 Score=49.16 Aligned_cols=61 Identities=21% Similarity=0.303 Sum_probs=49.0
Q ss_pred HHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCC
Q 007517 370 MVDLLGRAGQVEDAMKLIEAM-PFEP-DAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNA 430 (600)
Q Consensus 370 li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 430 (600)
+...+.+.|++++|.+.|++. ...| +...|..+..++...|++++|...++++++..|++|
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 456778889999999999888 4456 466788888889999999999999999999999874
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.003 Score=63.04 Aligned_cols=103 Identities=8% Similarity=-0.045 Sum_probs=81.9
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCC
Q 007517 300 ISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQ 379 (600)
Q Consensus 300 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 379 (600)
...+...|++++|+++|++.++.. +-+...+..+..++...|++++|...++.+.... +.+...|..+..+|...|+
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~--P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELD--PSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHhCC
Confidence 456678899999999999999852 3345577778889999999999999999998742 3467889999999999999
Q ss_pred HHHHHHHHHhC-CCCCCHHHHHHHHHH
Q 007517 380 VEDAMKLIEAM-PFEPDAIIWGSLLGA 405 (600)
Q Consensus 380 ~~~A~~~~~~m-~~~p~~~~~~~ll~~ 405 (600)
+++|...|++. .+.|+......++..
T Consensus 86 ~~eA~~~~~~al~l~P~~~~~~~~l~~ 112 (356)
T PLN03088 86 YQTAKAALEKGASLAPGDSRFTKLIKE 112 (356)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 99999999987 556665554444433
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00037 Score=50.77 Aligned_cols=52 Identities=29% Similarity=0.385 Sum_probs=39.6
Q ss_pred HHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007517 407 RTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMRK 458 (600)
Q Consensus 407 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 458 (600)
...|++++|...++++++.+|+++.....++.+|.+.|++++|.++++++..
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3567788888888888888888877777888888888888888887776654
|
... |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0014 Score=61.02 Aligned_cols=101 Identities=17% Similarity=0.116 Sum_probs=86.2
Q ss_pred CCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHc---CCHHHHHHHHHHHhccCCCCCchHHH
Q 007517 361 EPKTEHYACMVDLLGRAGQVEDAMKLIEAM-PFEP-DAIIWGSLLGACRTH---MKLDLAEVAAKKLLQLEPKNAGPYIL 435 (600)
Q Consensus 361 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~---g~~~~a~~~~~~~~~~~p~~~~~~~~ 435 (600)
+.|...|-.|...|.+.|+.+.|...|.+. .+.| ++..+..+..++... ....++..++++++.++|.++.+...
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l 232 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL 232 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence 567999999999999999999999999887 3333 566666666665433 35578999999999999999999999
Q ss_pred HHHHHHhcCCchHHHHHHHHHHhCCC
Q 007517 436 LSNIYASQGRFHDVAELRKNMRKRNV 461 (600)
Q Consensus 436 l~~~~~~~g~~~~a~~~~~~m~~~g~ 461 (600)
|+..+...|++.+|...++.|.+..-
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~lp 258 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLLP 258 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCC
Confidence 99999999999999999999998753
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.016 Score=51.04 Aligned_cols=81 Identities=10% Similarity=0.005 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHH
Q 007517 293 IVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPD--DVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACM 370 (600)
Q Consensus 293 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l 370 (600)
...|..+...+...|++++|+..|++.......|. ..++..+...+...|+.++|...++...... +.....+..+
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~--~~~~~~~~~l 112 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN--PFLPQALNNM 112 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCcHHHHHHH
Confidence 34566667777777888888888887765432221 2356666667777777777777777766531 2234445555
Q ss_pred HHHHh
Q 007517 371 VDLLG 375 (600)
Q Consensus 371 i~~~~ 375 (600)
...|.
T Consensus 113 a~i~~ 117 (168)
T CHL00033 113 AVICH 117 (168)
T ss_pred HHHHH
Confidence 55555
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.14 Score=49.48 Aligned_cols=107 Identities=11% Similarity=0.100 Sum_probs=64.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-----CCHH-HHHHHHHHHhccCCHHHHHHHHHHhHhcC-CCCCC--hH
Q 007517 295 MWNSIISGYAQYGLGEKSLKVFHEMFSSGVM-----PDDV-TLVGVLSACSYTGKVKEGREIFESMKSKY-LVEPK--TE 365 (600)
Q Consensus 295 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-----p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~-~~~p~--~~ 365 (600)
.+..+...+.+.|++++|+++|++....-.. ++.. .|...+-++...|+...|.+.++...... ++..+ -.
T Consensus 157 ~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~ 236 (282)
T PF14938_consen 157 CLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYK 236 (282)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHH
Confidence 4455677888899999999999988764322 2221 23333335566789999999998876432 33333 34
Q ss_pred HHHHHHHHHhh--cCCHHHHHHHHHhCCCCCCHHHHHHH
Q 007517 366 HYACMVDLLGR--AGQVEDAMKLIEAMPFEPDAIIWGSL 402 (600)
Q Consensus 366 ~~~~li~~~~~--~g~~~~A~~~~~~m~~~p~~~~~~~l 402 (600)
....|++++-. ...+++|..-|+.+. +.|..--..|
T Consensus 237 ~~~~l~~A~~~~D~e~f~~av~~~d~~~-~ld~w~~~~l 274 (282)
T PF14938_consen 237 FLEDLLEAYEEGDVEAFTEAVAEYDSIS-RLDNWKTKML 274 (282)
T ss_dssp HHHHHHHHHHTT-CCCHHHHCHHHTTSS----HHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcccC-ccHHHHHHHH
Confidence 45666777654 346788888888874 3444433333
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.00096 Score=49.38 Aligned_cols=57 Identities=12% Similarity=0.167 Sum_probs=49.1
Q ss_pred HHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 007517 404 GACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMRKRN 460 (600)
Q Consensus 404 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 460 (600)
..+.+.++++.|..+++++++++|+++..+...+.+|...|++++|.+.++...+.+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 567788899999999999999999988888889999999999999999988887643
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.054 Score=52.29 Aligned_cols=116 Identities=19% Similarity=0.204 Sum_probs=67.4
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc-CCHHHHHHHHHHhHhcCCCCCC----hHHHHHHHHHH
Q 007517 300 ISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYT-GKVKEGREIFESMKSKYLVEPK----TEHYACMVDLL 374 (600)
Q Consensus 300 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~-g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~ 374 (600)
+..|...|++..|-+.+.++ ...|... |++++|.+.|++..+-+.-... ...+..+...+
T Consensus 101 ~~~y~~~G~~~~aA~~~~~l---------------A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~ 165 (282)
T PF14938_consen 101 IEIYREAGRFSQAAKCLKEL---------------AEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLY 165 (282)
T ss_dssp HHHHHHCT-HHHHHHHHHHH---------------HHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred HHHHHhcCcHHHHHHHHHHH---------------HHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHH
Confidence 45555666665555554443 2345455 6677777776665543211111 34566677888
Q ss_pred hhcCCHHHHHHHHHhCC---C-----CCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCC
Q 007517 375 GRAGQVEDAMKLIEAMP---F-----EPDAI-IWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNA 430 (600)
Q Consensus 375 ~~~g~~~~A~~~~~~m~---~-----~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 430 (600)
.+.|++++|.++|++.. . +.+.. .+-..+-.+...||...|...+++..+.+|.-.
T Consensus 166 ~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~ 230 (282)
T PF14938_consen 166 ARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFA 230 (282)
T ss_dssp HHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTST
T ss_pred HHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC
Confidence 88999999999888761 1 11221 223333456677899999999999998888643
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.28 Score=48.57 Aligned_cols=114 Identities=13% Similarity=0.128 Sum_probs=76.1
Q ss_pred ccCC-HHHHHHHHHHhHhcCCCCCChHHHHHHHH----HHhhc---CC---HHHHHHHHHhCCCCC----CHHHHHHHHH
Q 007517 340 YTGK-VKEGREIFESMKSKYLVEPKTEHYACMVD----LLGRA---GQ---VEDAMKLIEAMPFEP----DAIIWGSLLG 404 (600)
Q Consensus 340 ~~g~-~~~a~~~~~~~~~~~~~~p~~~~~~~li~----~~~~~---g~---~~~A~~~~~~m~~~p----~~~~~~~ll~ 404 (600)
+.|. -+.|..+++.+.+-. +-|...-|.+.. .|..+ .. +-.-+.++++.++.| +...-|.|..
T Consensus 391 ~~g~~dekalnLLk~il~ft--~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaD 468 (549)
T PF07079_consen 391 EIGQCDEKALNLLKLILQFT--NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLAD 468 (549)
T ss_pred hcCCccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHH
Confidence 3444 677788877776521 234433333221 22211 11 122233455556655 3445666666
Q ss_pred H--HHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHH
Q 007517 405 A--CRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNM 456 (600)
Q Consensus 405 ~--~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 456 (600)
| +..+|++.++.-....+.++.| ++.+|..++-......+++||..+++.+
T Consensus 469 AEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 469 AEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 6 5678999999999999999999 7799999999999999999999999864
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.25 Score=47.83 Aligned_cols=249 Identities=15% Similarity=0.102 Sum_probs=149.6
Q ss_pred hHHHHHHHHHH--cCChHHHHHHHHHHHHcCCccCchhHhhHHHHHhh--hcchHHHHHHHHHHHHcCCCCchhhH--HH
Q 007517 194 TWSGMIKVYER--KGYELEVIDLFTLMQKEGVRVNFPSLISVLSVCAS--LASLDHGRQVHAQLVRCQFDVDVYVA--SV 267 (600)
Q Consensus 194 ~~~~li~~~~~--~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~--~~ 267 (600)
.|.+|-.++.. .|+-..|.+.-.+-.+. +..|...+..++.+-+. .|+.+.|++-|+.|... |..... ..
T Consensus 84 gyqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRg 159 (531)
T COG3898 84 GYQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRG 159 (531)
T ss_pred HHHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHH
Confidence 45555555544 45555665544443322 45566666677666543 48888888888888752 222211 22
Q ss_pred HHHHHHHcCCHHHHHhhhhhcCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCCHH--HHHHHHHHHhc-
Q 007517 268 LITMYIKCGELVKGKLIFDNFASK---DIVMWNSIISGYAQYGLGEKSLKVFHEMFSSG-VMPDDV--TLVGVLSACSY- 340 (600)
Q Consensus 268 li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~--t~~~ll~a~~~- 340 (600)
|.-.--+.|..+.|..+-+..-.. -...|.+.+...+..|+++.|+++++.-+... +.++.. .-..||.+-..
T Consensus 160 LyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s 239 (531)
T COG3898 160 LYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMS 239 (531)
T ss_pred HHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHH
Confidence 333334578888887777665432 34677888888888888888888888765543 455543 22233332211
Q ss_pred --cCCHHHHHHHHHHhHhcCCCCCChHHH-HHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHH-
Q 007517 341 --TGKVKEGREIFESMKSKYLVEPKTEHY-ACMVDLLGRAGQVEDAMKLIEAM-PFEPDAIIWGSLLGACRTHMKLDLA- 415 (600)
Q Consensus 341 --~g~~~~a~~~~~~~~~~~~~~p~~~~~-~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~a- 415 (600)
..+...|+..-.+.. .+.|+..-- ..-...|.+.|++.++-.+++.+ +.+|.+.+|...+. .+.|+....
T Consensus 240 ~ldadp~~Ar~~A~~a~---KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~lY~~--ar~gdta~dR 314 (531)
T COG3898 240 LLDADPASARDDALEAN---KLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIALLYVR--ARSGDTALDR 314 (531)
T ss_pred HhcCChHHHHHHHHHHh---hcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHHHHHHH--hcCCCcHHHH
Confidence 124555555544433 345664332 23346788888888888888888 55777777654443 355554333
Q ss_pred HHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHH
Q 007517 416 EVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAE 451 (600)
Q Consensus 416 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 451 (600)
.+-.+++.++.|++......++.+-...|++..|..
T Consensus 315 lkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa 350 (531)
T COG3898 315 LKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARA 350 (531)
T ss_pred HHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHH
Confidence 234455666788888877788888777887766653
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.42 Score=50.27 Aligned_cols=322 Identities=14% Similarity=0.079 Sum_probs=186.6
Q ss_pred HHHHHHHHHhCCChHHHHHHHhhcCCCC---cchHHHHHHHHhcCC---ChHHHHHHHhhCCC--CCccchhHHHHHHHh
Q 007517 102 WTTMISGYVNNNRIDVARKLFEVMPEKN---EVSWTAMLMGYTQCG---RIQDAWELFKAMPM--KSVVASNSMILGLGQ 173 (600)
Q Consensus 102 ~~~li~~~~~~g~~~~A~~~~~~m~~p~---~~t~~~ll~~~~~~g---~~~~a~~~~~~~~~--~~~~~~~~li~~~~~ 173 (600)
-..+|+-++..+.+..|+++-..+..|. ...|.....-+.+.. +-+.+..+-+++.. .....|..+..-...
T Consensus 440 ~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~~~~iSy~~iA~~Ay~ 519 (829)
T KOG2280|consen 440 EEVVIDRLVDRHLYSVAIQVAKLLNLPESQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKLTPGISYAAIARRAYQ 519 (829)
T ss_pred hhhhhHHHHhcchhHHHHHHHHHhCCccccccHHHHHHHHHHHhccCccchHHHHHHHHHhcccCCCceeHHHHHHHHHh
Confidence 3456777777888888888888777754 455555555555442 23334444444443 445567777777778
Q ss_pred cCCHHHHHHHHHhcccC--------ChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCchhHhhHHHHHhhhcchHH
Q 007517 174 NGEVQKARVVFDQMREK--------DDATWSGMIKVYERKGYELEVIDLFTLMQKEGVRVNFPSLISVLSVCASLASLDH 245 (600)
Q Consensus 174 ~g~~~~A~~~f~~~~~~--------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~ 245 (600)
+|+.+-|..+.+.=+.. +..-+..-+.-..+.|+++-...++..|.+.- +...|... ..+...
T Consensus 520 ~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~---~~s~l~~~------l~~~p~ 590 (829)
T KOG2280|consen 520 EGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKL---NRSSLFMT------LRNQPL 590 (829)
T ss_pred cCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHH---HHHHHHHH------HHhchh
Confidence 88888888887764421 22234445555666677666666665554431 11111111 122333
Q ss_pred HHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHhhh-hhc-----CCCCHHHHHHHHHHHHhcCC----------h
Q 007517 246 GRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIF-DNF-----ASKDIVMWNSIISGYAQYGL----------G 309 (600)
Q Consensus 246 a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~-~~~-----~~~~~~~~~~li~~~~~~g~----------~ 309 (600)
|..++.+..+..-. ..|-+.|-...+.+++-.+- +.. .+.-+........++++... .
T Consensus 591 a~~lY~~~~r~~~~------~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~ed~ 664 (829)
T KOG2280|consen 591 ALSLYRQFMRHQDR------ATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKALEDQ 664 (829)
T ss_pred hhHHHHHHHHhhch------hhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHHHHH
Confidence 44444444432100 11222232222222221111 110 01111122223334444332 1
Q ss_pred HHHHHHHHHHHH-CCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHH
Q 007517 310 EKSLKVFHEMFS-SGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIE 388 (600)
Q Consensus 310 ~~A~~~~~~m~~-~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 388 (600)
.+-+.+.+.+.. .|..-...|.+-.+.-+...|+..+|.++-.+. . -||...|-.-+.+++..+++++-+++-+
T Consensus 665 ~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~F----k-ipdKr~~wLk~~aLa~~~kweeLekfAk 739 (829)
T KOG2280|consen 665 MKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDF----K-IPDKRLWWLKLTALADIKKWEELEKFAK 739 (829)
T ss_pred HHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhc----C-CcchhhHHHHHHHHHhhhhHHHHHHHHh
Confidence 122223333322 244455566777777888899999998876554 3 3888999999999999999999888888
Q ss_pred hCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHH
Q 007517 389 AMPFEPDAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRK 454 (600)
Q Consensus 389 ~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 454 (600)
++. .+.-|.-...+|.+.|+.++|..++-+.-. +.-...+|.+.|++.+|.++--
T Consensus 740 skk---sPIGy~PFVe~c~~~~n~~EA~KYiprv~~--------l~ekv~ay~~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 740 SKK---SPIGYLPFVEACLKQGNKDEAKKYIPRVGG--------LQEKVKAYLRVGDVKEAADLAA 794 (829)
T ss_pred ccC---CCCCchhHHHHHHhcccHHHHhhhhhccCC--------hHHHHHHHHHhccHHHHHHHHH
Confidence 763 255677788999999999999988876522 2267889999999999987643
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0012 Score=50.43 Aligned_cols=81 Identities=20% Similarity=0.280 Sum_probs=39.8
Q ss_pred cCChHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHH
Q 007517 306 YGLGEKSLKVFHEMFSSGV-MPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAM 384 (600)
Q Consensus 306 ~g~~~~A~~~~~~m~~~g~-~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 384 (600)
.|+++.|+.+|+++.+... .|+...+..+..++.+.|++++|..+++.... + +.+....-.+...|.+.|++++|.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~~~--~-~~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKLKL--D-PSNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCHTH--H-HCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHhCC--C-CCCHHHHHHHHHHHHHhCCHHHHH
Confidence 4566666666666665421 11233333355566666666666666655111 1 112233334455666666666666
Q ss_pred HHHHh
Q 007517 385 KLIEA 389 (600)
Q Consensus 385 ~~~~~ 389 (600)
+.+++
T Consensus 79 ~~l~~ 83 (84)
T PF12895_consen 79 KALEK 83 (84)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 66543
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.017 Score=55.96 Aligned_cols=264 Identities=8% Similarity=0.011 Sum_probs=151.0
Q ss_pred HHHHhcCCHHHHHHHHHhccc--C-ChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCccC-chhHhhHHHHHhhhcchH
Q 007517 169 LGLGQNGEVQKARVVFDQMRE--K-DDATWSGMIKVYERKGYELEVIDLFTLMQKEGVRVN-FPSLISVLSVCASLASLD 244 (600)
Q Consensus 169 ~~~~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~ 244 (600)
+.+.+..++.+|+..+....+ | +..-|..-...+...|++++|+--.+.-.+ ++|. ..+....-.++...++..
T Consensus 57 n~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r--~kd~~~k~~~r~~~c~~a~~~~i 134 (486)
T KOG0550|consen 57 NAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVR--LKDGFSKGQLREGQCHLALSDLI 134 (486)
T ss_pred chHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhhee--cCCCccccccchhhhhhhhHHHH
Confidence 345555666666666655443 2 344455566666666666666655444332 2222 223444444455555555
Q ss_pred HHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHhhhhhcCC-----CCHHHHHHH-HHHHHhcCChHHHHHHHHH
Q 007517 245 HGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFAS-----KDIVMWNSI-ISGYAQYGLGEKSLKVFHE 318 (600)
Q Consensus 245 ~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~~~~~~~l-i~~~~~~g~~~~A~~~~~~ 318 (600)
+|.+.++.- ..+ ....|+..++.... |--.+|..+ ...+...|++++|...-..
T Consensus 135 ~A~~~~~~~---------~~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ 194 (486)
T KOG0550|consen 135 EAEEKLKSK---------QAY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAID 194 (486)
T ss_pred HHHHHhhhh---------hhh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHH
Confidence 555444310 000 11111222222211 112333333 2345566777777766655
Q ss_pred HHHCCCCCCHHHHHHHHH--HHhccCCHHHHHHHHHHhHhcCCCCCChHH-------------HHHHHHHHhhcCCHHHH
Q 007517 319 MFSSGVMPDDVTLVGVLS--ACSYTGKVKEGREIFESMKSKYLVEPKTEH-------------YACMVDLLGRAGQVEDA 383 (600)
Q Consensus 319 m~~~g~~p~~~t~~~ll~--a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~-------------~~~li~~~~~~g~~~~A 383 (600)
..+. .++. .+..+++ ++-..++.+.|...|++..+ +.|+... +..=.....+.|++.+|
T Consensus 195 ilkl--d~~n-~~al~vrg~~~yy~~~~~ka~~hf~qal~---ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A 268 (486)
T KOG0550|consen 195 ILKL--DATN-AEALYVRGLCLYYNDNADKAINHFQQALR---LDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKA 268 (486)
T ss_pred HHhc--ccch-hHHHHhcccccccccchHHHHHHHhhhhc---cChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHH
Confidence 5543 2211 1111222 23345667777777766543 2333211 12223445678999999
Q ss_pred HHHHHhC-CC-----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHHH
Q 007517 384 MKLIEAM-PF-----EPDAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMR 457 (600)
Q Consensus 384 ~~~~~~m-~~-----~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 457 (600)
.+.+.+. .+ +|+...|.....+..+.|+.++|+.--+++++++|.-...|..-++++...++|++|.+.++...
T Consensus 269 ~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~ 348 (486)
T KOG0550|consen 269 YECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAM 348 (486)
T ss_pred HHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998877 43 34566677777778889999999999999999999888888889999999999999999998876
Q ss_pred hCC
Q 007517 458 KRN 460 (600)
Q Consensus 458 ~~g 460 (600)
+..
T Consensus 349 q~~ 351 (486)
T KOG0550|consen 349 QLE 351 (486)
T ss_pred hhc
Confidence 543
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.018 Score=52.36 Aligned_cols=230 Identities=11% Similarity=0.024 Sum_probs=131.1
Q ss_pred ccHHHHHHHHHhCCChHHHHHHHhhcCC---CCcchHHHHHHHH-hcCCCh--HHHHHHHhhCCCCCccchhHHHHHHHh
Q 007517 100 ISWTTMISGYVNNNRIDVARKLFEVMPE---KNEVSWTAMLMGY-TQCGRI--QDAWELFKAMPMKSVVASNSMILGLGQ 173 (600)
Q Consensus 100 ~~~~~li~~~~~~g~~~~A~~~~~~m~~---p~~~t~~~ll~~~-~~~g~~--~~a~~~~~~~~~~~~~~~~~li~~~~~ 173 (600)
..|+.-+.++++....++|..-+..... ||-+ |...=..+ .+.|.. =..+-+|.++.......+++|++.|.-
T Consensus 70 q~wT~r~~~l~kLR~~~~a~~EL~~f~~lD~pdl~-Yey~p~iyp~rrGSmVPFsmR~lhAe~~~~lgnpqesLdRl~~L 148 (366)
T KOG2796|consen 70 QLWTVRLALLVKLRLFQNAEMELEPFGNLDQPDLY-YEYYPHVYPGRRGSMVPFSMRILHAELQQYLGNPQESLDRLHKL 148 (366)
T ss_pred HHHHHHHHHHHHHhhhHHHHhhhhhhccCCCccee-eeeccccCCCCcCccccHHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 3466667777887777777655444443 3321 00000000 111211 112234444444555667788887777
Q ss_pred cCCHHHHHHHHHhcccC--Ch--------hhHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCchhHhhHHHHHhhhcch
Q 007517 174 NGEVQKARVVFDQMREK--DD--------ATWSGMIKVYERKGYELEVIDLFTLMQKEGVRVNFPSLISVLSVCASLASL 243 (600)
Q Consensus 174 ~g~~~~A~~~f~~~~~~--~~--------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 243 (600)
..-+++-...|+.-..+ .+ ...+.++..+...|.+.-.+..+.+..+...+.++.....+.+...+.|+.
T Consensus 149 ~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~ 228 (366)
T KOG2796|consen 149 KTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDI 228 (366)
T ss_pred HHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccH
Confidence 66667666666654432 22 234456666666777777777777777765555666667777777777888
Q ss_pred HHHHHHHHHHHHcCCCCchhhHH-----HHHHHHHHcCCHHHHHhhhhhcCC---CCHHHHHHHHHHHHhcCChHHHHHH
Q 007517 244 DHGRQVHAQLVRCQFDVDVYVAS-----VLITMYIKCGELVKGKLIFDNFAS---KDIVMWNSIISGYAQYGLGEKSLKV 315 (600)
Q Consensus 244 ~~a~~~~~~~~~~~~~~~~~~~~-----~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~ 315 (600)
+.|...++...+..-..+...++ .....|.-..++..|...|++++. .|++.-|.-.-...-.|+..+|++.
T Consensus 229 k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~ 308 (366)
T KOG2796|consen 229 KTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQ 308 (366)
T ss_pred HHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHH
Confidence 88888777766543333333333 333344556677777777766654 3445555444444445677777777
Q ss_pred HHHHHHCCCCCCHHHHH
Q 007517 316 FHEMFSSGVMPDDVTLV 332 (600)
Q Consensus 316 ~~~m~~~g~~p~~~t~~ 332 (600)
.+.|.+. .|...+-.
T Consensus 309 ~e~~~~~--~P~~~l~e 323 (366)
T KOG2796|consen 309 LEAMVQQ--DPRHYLHE 323 (366)
T ss_pred HHHHhcc--CCccchhh
Confidence 7777664 45444433
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0014 Score=47.79 Aligned_cols=65 Identities=22% Similarity=0.250 Sum_probs=53.7
Q ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcC-CHHHHHHHHHHHhccCC
Q 007517 363 KTEHYACMVDLLGRAGQVEDAMKLIEAM-PFEP-DAIIWGSLLGACRTHM-KLDLAEVAAKKLLQLEP 427 (600)
Q Consensus 363 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~p 427 (600)
+...|..+...+.+.|++++|+..|++. ...| +...|..+..++...| ++++|+..++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 4567888888889999999999988877 3345 4667888888899998 79999999999998887
|
... |
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.079 Score=45.73 Aligned_cols=133 Identities=14% Similarity=0.112 Sum_probs=101.1
Q ss_pred CCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC---CHHHH
Q 007517 324 VMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM-PFEP---DAIIW 399 (600)
Q Consensus 324 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p---~~~~~ 399 (600)
..|+...-..|..+....|+..+|...|++...- -+..|....-.+..+....+++.+|...++.+ ...| .+.+-
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG-~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~ 163 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSG-IFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGH 163 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhcc-ccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCch
Confidence 4677766667888888999999999999887762 34567778888888888899999999888877 1112 22233
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007517 400 GSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMRK 458 (600)
Q Consensus 400 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 458 (600)
-.+...+...|.++.|+..|+.++.--|.. ..-......+.++|+.+++..-+..+.+
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~ypg~-~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISYYPGP-QARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHhCCCH-HHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 445677888999999999999999987754 5666677788899999888876665544
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.021 Score=59.78 Aligned_cols=134 Identities=19% Similarity=0.157 Sum_probs=98.2
Q ss_pred CCCCCHHHHHHHHHHHhcc-----CCHHHHHHHHHHhHhcCCCCCC-hHHHHHHHHHHhhc--------CCHHHHHHHHH
Q 007517 323 GVMPDDVTLVGVLSACSYT-----GKVKEGREIFESMKSKYLVEPK-TEHYACMVDLLGRA--------GQVEDAMKLIE 388 (600)
Q Consensus 323 g~~p~~~t~~~ll~a~~~~-----g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~--------g~~~~A~~~~~ 388 (600)
+.+.|...|...+.+.... +..+.|..+|++..+. .|+ ...|..+..+|... +++..+.+..+
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l---dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~ 408 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS---EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELD 408 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 4566778888888875443 3377899999999874 566 45555544444322 23445555555
Q ss_pred hC---C-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 007517 389 AM---P-FEPDAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMRKRN 460 (600)
Q Consensus 389 ~m---~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 460 (600)
+. + ...+...|..+.-.....|++++|...++++++++|+ ...|..++.+|...|+.++|.+.+++.....
T Consensus 409 ~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps-~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~ 483 (517)
T PRK10153 409 NIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMS-WLNYVLLGKVYELKGDNRLAADAYSTAFNLR 483 (517)
T ss_pred HhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 43 1 2335677887777777889999999999999999995 6899999999999999999999999887644
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.00087 Score=48.78 Aligned_cols=61 Identities=21% Similarity=0.311 Sum_probs=34.6
Q ss_pred ccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHH
Q 007517 340 YTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM-PFEPDAIIWGSL 402 (600)
Q Consensus 340 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~l 402 (600)
..|++++|.++|+.+.... +.+...+..++.+|.+.|++++|.++++++ ...|+...|..+
T Consensus 3 ~~~~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l 64 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRN--PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQL 64 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHT--TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHH
Confidence 3566666666666665542 335555566666666666666666666666 334554444333
|
... |
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.011 Score=59.30 Aligned_cols=120 Identities=16% Similarity=0.070 Sum_probs=87.0
Q ss_pred CCccCchhHhhHHHHHhhhcchHHHHHHHHHHHHc--CCCCchhhHHHHHHHHHHcCCHHHHHhhhhhcCC----CCHHH
Q 007517 222 GVRVNFPSLISVLSVCASLASLDHGRQVHAQLVRC--QFDVDVYVASVLITMYIKCGELVKGKLIFDNFAS----KDIVM 295 (600)
Q Consensus 222 g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~----~~~~~ 295 (600)
+.+.+...+..+++.+....+++.+..++-..... ....-..+..++|..|.+.|..+.+..+++.=.. +|..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 34556677777788888877888888777777665 2223344556888888888888888887765443 67788
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 007517 296 WNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYT 341 (600)
Q Consensus 296 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 341 (600)
+|.||..+.+.|++..|.++..+|..++...+..|+...+.+|.+-
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 8888888888888888888888887777777777777666666554
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.00036 Score=42.48 Aligned_cols=33 Identities=36% Similarity=0.649 Sum_probs=30.7
Q ss_pred HHHHhccCCCCCchHHHHHHHHHhcCCchHHHH
Q 007517 419 AKKLLQLEPKNAGPYILLSNIYASQGRFHDVAE 451 (600)
Q Consensus 419 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 451 (600)
++++++++|+++.+|..|+.+|...|++++|++
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 678999999999999999999999999999863
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.45 Score=47.06 Aligned_cols=141 Identities=16% Similarity=0.260 Sum_probs=95.1
Q ss_pred hhhHHHHHHHHHHcCCHHHHHhhhhhcCC-----CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH-HHHH
Q 007517 262 VYVASVLITMYIKCGELVKGKLIFDNFAS-----KDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTL-VGVL 335 (600)
Q Consensus 262 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~-~~ll 335 (600)
..++..+++.-.+..-++.|+.+|-+..+ +++..++++|.-++. |+..-|..+|+--... -||...| .-.+
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~--f~d~~~y~~kyl 473 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLK--FPDSTLYKEKYL 473 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHh--CCCchHHHHHHH
Confidence 45677777777777778888888876643 577788888877664 5667888888765443 4555433 3445
Q ss_pred HHHhccCCHHHHHHHHHHhHhcCCCCCC--hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHH
Q 007517 336 SACSYTGKVKEGREIFESMKSKYLVEPK--TEHYACMVDLLGRAGQVEDAMKLIEAM-PFEPDAIIWGSLLGACR 407 (600)
Q Consensus 336 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~ 407 (600)
.-+...++-+.|+.+|+....+ +..+ ...|..+++--..-|++..|..+=+++ ..-|...+-....+-|.
T Consensus 474 ~fLi~inde~naraLFetsv~r--~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQen~~evF~Sry~ 546 (660)
T COG5107 474 LFLIRINDEENARALFETSVER--LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQENLIEVFTSRYA 546 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHH--HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcHhHHHHHHHHHh
Confidence 5667788999999999966553 3333 568889999888899998887776666 22344433333333333
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.01 Score=48.37 Aligned_cols=86 Identities=19% Similarity=0.118 Sum_probs=54.1
Q ss_pred HHHHHhhcCCHHHHHHHHHhC---CCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC---CCchHHHHHHHHH
Q 007517 370 MVDLLGRAGQVEDAMKLIEAM---PFEPD--AIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPK---NAGPYILLSNIYA 441 (600)
Q Consensus 370 li~~~~~~g~~~~A~~~~~~m---~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~ 441 (600)
+..++-..|+.++|..+|++. +.... ...+-.+.+.+...|++++|..++++.....|+ +......++.++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 344555666666666666655 22221 234555666777777777777777777776666 4445555666777
Q ss_pred hcCCchHHHHHHHH
Q 007517 442 SQGRFHDVAELRKN 455 (600)
Q Consensus 442 ~~g~~~~a~~~~~~ 455 (600)
..|+.++|.+.+-.
T Consensus 87 ~~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 87 NLGRPKEALEWLLE 100 (120)
T ss_pred HCCCHHHHHHHHHH
Confidence 77777777776554
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.025 Score=48.71 Aligned_cols=102 Identities=17% Similarity=0.239 Sum_probs=90.2
Q ss_pred CCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC---CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC--CCch
Q 007517 358 YLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM---PFEPDAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPK--NAGP 432 (600)
Q Consensus 358 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~ 432 (600)
..+.|++..--.|...+.+.|+..||...|++. .+.-|....-.+..+....++...|...++++.+..|. .|.+
T Consensus 83 ~~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~ 162 (251)
T COG4700 83 LAIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDG 162 (251)
T ss_pred HhhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCc
Confidence 345688888889999999999999999999988 45668888899999999999999999999999998775 5677
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007517 433 YILLSNIYASQGRFHDVAELRKNMRKR 459 (600)
Q Consensus 433 ~~~l~~~~~~~g~~~~a~~~~~~m~~~ 459 (600)
...++..|...|++++|+..|+...+.
T Consensus 163 ~Ll~aR~laa~g~~a~Aesafe~a~~~ 189 (251)
T COG4700 163 HLLFARTLAAQGKYADAESAFEVAISY 189 (251)
T ss_pred hHHHHHHHHhcCCchhHHHHHHHHHHh
Confidence 889999999999999999999987764
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.0067 Score=58.48 Aligned_cols=256 Identities=11% Similarity=0.026 Sum_probs=144.6
Q ss_pred HHHcCChHHHHHHHHHHHHcCCccCc----hhHhhHHHHHhhhcchHHHHHHHHHHHH----cCCC-CchhhHHHHHHHH
Q 007517 202 YERKGYELEVIDLFTLMQKEGVRVNF----PSLISVLSVCASLASLDHGRQVHAQLVR----CQFD-VDVYVASVLITMY 272 (600)
Q Consensus 202 ~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~-~~~~~~~~li~~y 272 (600)
+++.|+....+.+|+...+.|. -|. ..|+.+-+++..++++++|.++|..=+. .|-. -.......|.+.+
T Consensus 27 Lck~gdcraGv~ff~aA~qvGT-eDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtl 105 (639)
T KOG1130|consen 27 LCKMGDCRAGVDFFKAALQVGT-EDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTL 105 (639)
T ss_pred HHhccchhhhHHHHHHHHHhcc-hHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchh
Confidence 5666777777777777766652 232 2344455566666777777776643221 0100 0111122233334
Q ss_pred HHcCCHHHHHhhhhhcC-------CC--CHHHHHHHHHHHHhcCC--------------------hHHHHHHHHHHH---
Q 007517 273 IKCGELVKGKLIFDNFA-------SK--DIVMWNSIISGYAQYGL--------------------GEKSLKVFHEMF--- 320 (600)
Q Consensus 273 ~~~g~~~~A~~~~~~~~-------~~--~~~~~~~li~~~~~~g~--------------------~~~A~~~~~~m~--- 320 (600)
--.|.+++|.-.-.+-. .+ ....+..+...|...|+ ++.|.++|.+=.
T Consensus 106 Kv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~ 185 (639)
T KOG1130|consen 106 KVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELS 185 (639)
T ss_pred hhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555543322111 00 12233444444443321 233444443321
Q ss_pred -HCCCC-CCHHHHHHHHHHHhccCCHHHHHHHHHH---hHhcCCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhC----
Q 007517 321 -SSGVM-PDDVTLVGVLSACSYTGKVKEGREIFES---MKSKYLVEP-KTEHYACMVDLLGRAGQVEDAMKLIEAM---- 390 (600)
Q Consensus 321 -~~g~~-p~~~t~~~ll~a~~~~g~~~~a~~~~~~---~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m---- 390 (600)
+.|-. .-...|..|-..|.-.|+++.|...++. +.+.+|-.. ....++.+...+.-.|+++.|.+.++..
T Consensus 186 ~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LA 265 (639)
T KOG1130|consen 186 EKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLA 265 (639)
T ss_pred HHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHH
Confidence 11100 0112344454555556889999887764 223333221 2456788888999999999999988754
Q ss_pred ---CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc----C--CCCCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007517 391 ---PF-EPDAIIWGSLLGACRTHMKLDLAEVAAKKLLQL----E--PKNAGPYILLSNIYASQGRFHDVAELRKNMRK 458 (600)
Q Consensus 391 ---~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~--p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 458 (600)
+- .-...+..+|.+.|....++++|+.++.+-+.+ + .....++..|+++|...|..++|..+.+.-.+
T Consensus 266 ielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 266 IELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 21 123556778889999889999999988775542 1 22346788999999999999999877665543
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.73 Score=48.58 Aligned_cols=322 Identities=14% Similarity=0.132 Sum_probs=146.4
Q ss_pred HHHHHHHHcCCCHHHHHHHHccCCCCC---cchHHHHHHHHHhcCC---hHHHHHHHhhCCC--CCcccHHHHHHHHHhC
Q 007517 41 TVMLGGFIRDSRIDDARRLFDMMPEKD---VVAQTNMVLGYCQDGR---VDEGREIFDEMPK--KNVISWTTMISGYVNN 112 (600)
Q Consensus 41 ~~ll~~~~~~g~~~~A~~~~~~m~~~~---~~~~~~li~~~~~~g~---~~~A~~~~~~m~~--~~~~~~~~li~~~~~~ 112 (600)
..+++-+...+.+..|+++-..+..|. ...+.....-+.+..+ -+-+..+=+++.. ...++|..+.+-....
T Consensus 441 ~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~~~~iSy~~iA~~Ay~~ 520 (829)
T KOG2280|consen 441 EVVIDRLVDRHLYSVAIQVAKLLNLPESQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKLTPGISYAAIARRAYQE 520 (829)
T ss_pred hhhhHHHHhcchhHHHHHHHHHhCCccccccHHHHHHHHHHHhccCccchHHHHHHHHHhcccCCCceeHHHHHHHHHhc
Confidence 335566666777888888777776554 4555556666665532 2233333334444 4556777777777777
Q ss_pred CChHHHHHHHhhcCC--------CCcchHHHHHHHHhcCCChHHHHHHHhhCC-CCCccchhHHHHHHHhcCCHHHHHHH
Q 007517 113 NRIDVARKLFEVMPE--------KNEVSWTAMLMGYTQCGRIQDAWELFKAMP-MKSVVASNSMILGLGQNGEVQKARVV 183 (600)
Q Consensus 113 g~~~~A~~~~~~m~~--------p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~ 183 (600)
|+++-|..+++.=.. -+..-+...+.-+...|+.+...+++-++. ..+...+. .-..+.-.|..+
T Consensus 521 GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~------~~l~~~p~a~~l 594 (829)
T KOG2280|consen 521 GRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLF------MTLRNQPLALSL 594 (829)
T ss_pred CcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHH------HHHHhchhhhHH
Confidence 888877777654322 122233344444455555554444443332 00000000 001111222222
Q ss_pred HHhccc-CChhhHHHHHHHHHHcCChHHHHHHHH--HHHH-cCCccCchhHhhHHHHHhhhcchHHHHHHHH--------
Q 007517 184 FDQMRE-KDDATWSGMIKVYERKGYELEVIDLFT--LMQK-EGVRVNFPSLISVLSVCASLASLDHGRQVHA-------- 251 (600)
Q Consensus 184 f~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~--~m~~-~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~-------- 251 (600)
|.+.-+ .|..+ +-..|-+..+. +++.-|. .... .-+.+-........++|++........+..+
T Consensus 595 Y~~~~r~~~~~~---l~d~y~q~dn~-~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~ed~~kLl~l 670 (829)
T KOG2280|consen 595 YRQFMRHQDRAT---LYDFYNQDDNH-QALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKALEDQMKLLKL 670 (829)
T ss_pred HHHHHHhhchhh---hhhhhhcccch-hhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHH
Confidence 222211 11110 11111111122 1111111 1000 0011111222233334444333111111111
Q ss_pred --HHH-HcCCCCchhhHHHHHHHHHHcCCHHHHHhhhhhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH
Q 007517 252 --QLV-RCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFASKDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDD 328 (600)
Q Consensus 252 --~~~-~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 328 (600)
.+. +.|..-.-.+.+--+.-+..-|+..+|.++-.+.+-||-..|-.-+.+++..+++++-+++-+.+. + +
T Consensus 671 Q~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~~~kweeLekfAkskk-----s-P 744 (829)
T KOG2280|consen 671 QRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALADIKKWEELEKFAKSKK-----S-P 744 (829)
T ss_pred HHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHhhhhHHHHHHHHhccC-----C-C
Confidence 111 112112222223333444556677777777666666666666666677777776666555544432 1 3
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHH
Q 007517 329 VTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIE 388 (600)
Q Consensus 329 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 388 (600)
.-|.....+|.+.|+.++|.+++.+.. |. . -.+.+|.+.|++.+|.++--
T Consensus 745 IGy~PFVe~c~~~~n~~EA~KYiprv~---~l---~----ekv~ay~~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 745 IGYLPFVEACLKQGNKDEAKKYIPRVG---GL---Q----EKVKAYLRVGDVKEAADLAA 794 (829)
T ss_pred CCchhHHHHHHhcccHHHHhhhhhccC---Ch---H----HHHHHHHHhccHHHHHHHHH
Confidence 445556667777777777776665432 11 1 45666677777766665543
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.016 Score=45.64 Aligned_cols=81 Identities=14% Similarity=0.167 Sum_probs=62.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHhccC--------CHHHHHHHHHHhHhcCCCCCChH
Q 007517 295 MWNSIISGYAQYGLGEKSLKVFHEMFSSGV-MPDDVTLVGVLSACSYTG--------KVKEGREIFESMKSKYLVEPKTE 365 (600)
Q Consensus 295 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~ll~a~~~~g--------~~~~a~~~~~~~~~~~~~~p~~~ 365 (600)
+-...|..+...+++.....+|+.+++.|+ .|+..+|+.+|.+..+.. ++-+...+++.|... +++|+..
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~-~lKP~~e 105 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSN-KLKPNDE 105 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHh-ccCCcHH
Confidence 334456666777999999999999999999 899999999998876543 244566777777764 6888888
Q ss_pred HHHHHHHHHhh
Q 007517 366 HYACMVDLLGR 376 (600)
Q Consensus 366 ~~~~li~~~~~ 376 (600)
+|+.++..+.+
T Consensus 106 tYnivl~~Llk 116 (120)
T PF08579_consen 106 TYNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHHH
Confidence 88888877654
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.015 Score=45.70 Aligned_cols=81 Identities=12% Similarity=0.076 Sum_probs=66.8
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHcCC-ccCchhHhhHHHHHhhhc--------chHHHHHHHHHHHHcCCCCchhh
Q 007517 194 TWSGMIKVYERKGYELEVIDLFTLMQKEGV-RVNFPSLISVLSVCASLA--------SLDHGRQVHAQLVRCQFDVDVYV 264 (600)
Q Consensus 194 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~ll~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~ 264 (600)
+-...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. .+-....+++.|+..+++|+..+
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et 106 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 344567777777999999999999999999 899999999999877543 34456778889999999999999
Q ss_pred HHHHHHHHHH
Q 007517 265 ASVLITMYIK 274 (600)
Q Consensus 265 ~~~li~~y~~ 274 (600)
|+.++..+.+
T Consensus 107 Ynivl~~Llk 116 (120)
T PF08579_consen 107 YNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHH
Confidence 9998887665
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.028 Score=45.81 Aligned_cols=106 Identities=15% Similarity=0.118 Sum_probs=60.3
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCccC--chhHhhHHHHHhhhcchHHHHHHHHHHHHcCCC--CchhhHHHHHHHHH
Q 007517 198 MIKVYERKGYELEVIDLFTLMQKEGVRVN--FPSLISVLSVCASLASLDHGRQVHAQLVRCQFD--VDVYVASVLITMYI 273 (600)
Q Consensus 198 li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~li~~y~ 273 (600)
+..++...|+.++|+.+|++....|+... ...+..+.+.+...|++++|..+++........ .+..+...+.-++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 45667778888888888888888776544 234555666667777777777777766654211 01122222333445
Q ss_pred HcCCHHHHHhhhhhcCCCCHHHHHHHHHHH
Q 007517 274 KCGELVKGKLIFDNFASKDIVMWNSIISGY 303 (600)
Q Consensus 274 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~ 303 (600)
..|+.++|.+.+-....++...|.--|..|
T Consensus 87 ~~gr~~eAl~~~l~~la~~~~~y~ra~~~y 116 (120)
T PF12688_consen 87 NLGRPKEALEWLLEALAETLPRYRRAIRFY 116 (120)
T ss_pred HCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666666555444433333343333333
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.19 Score=49.58 Aligned_cols=159 Identities=19% Similarity=0.097 Sum_probs=95.3
Q ss_pred HHHHHHHcCCHHHHHhhhhhcCCC---C----HHHHHHHHHHHHh---cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007517 268 LITMYIKCGELVKGKLIFDNFASK---D----IVMWNSIISGYAQ---YGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSA 337 (600)
Q Consensus 268 li~~y~~~g~~~~A~~~~~~~~~~---~----~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 337 (600)
++-.|-...+++...++++.+... + ...-....-++.+ .|+.++|++++..+....-.++..||..+...
T Consensus 147 lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRI 226 (374)
T PF13281_consen 147 LLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRI 226 (374)
T ss_pred HHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHH
Confidence 344566677777777777776653 1 1111223334455 67888888888886655566777777666554
Q ss_pred Hh---------ccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHH----HHHHHH---HhC-------CCCC
Q 007517 338 CS---------YTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVE----DAMKLI---EAM-------PFEP 394 (600)
Q Consensus 338 ~~---------~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~----~A~~~~---~~m-------~~~p 394 (600)
|- ....+++|...|.+.- .+.|+..+--.++..+...|... +..++- ... .-..
T Consensus 227 yKD~~~~s~~~d~~~ldkAi~~Y~kgF---e~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~ 303 (374)
T PF13281_consen 227 YKDLFLESNFTDRESLDKAIEWYRKGF---EIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQ 303 (374)
T ss_pred HHHHHHHcCccchHHHHHHHHHHHHHH---cCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccc
Confidence 42 1223666766666543 34455444334444444444322 222222 111 1124
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC
Q 007517 395 DAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKN 429 (600)
Q Consensus 395 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 429 (600)
|-..+.+++.++.-.|+.+.|.+.++++..+.|+.
T Consensus 304 dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~ 338 (374)
T PF13281_consen 304 DYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPA 338 (374)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcc
Confidence 56667889999999999999999999999998865
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.011 Score=55.96 Aligned_cols=95 Identities=16% Similarity=0.130 Sum_probs=63.5
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCC---chHHHH
Q 007517 365 EHYACMVDLLGRAGQVEDAMKLIEAM-PFEPD----AIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNA---GPYILL 436 (600)
Q Consensus 365 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l 436 (600)
..|..-+..+.+.|++++|...|+.. ...|+ ...+.-+...+...|+++.|...|+++++..|+++ ..+..+
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 34555555556667777777777766 22233 23455566777778888888888888887766643 344556
Q ss_pred HHHHHhcCCchHHHHHHHHHHhC
Q 007517 437 SNIYASQGRFHDVAELRKNMRKR 459 (600)
Q Consensus 437 ~~~~~~~g~~~~a~~~~~~m~~~ 459 (600)
+.+|...|++++|.++++...+.
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH
Confidence 77777888888888888877653
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.02 Score=50.95 Aligned_cols=97 Identities=19% Similarity=0.237 Sum_probs=70.3
Q ss_pred Hhhhhhc--CCCCHHHHHHHHHHHHh-----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc-------------
Q 007517 282 KLIFDNF--ASKDIVMWNSIISGYAQ-----YGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYT------------- 341 (600)
Q Consensus 282 ~~~~~~~--~~~~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~------------- 341 (600)
...|+.. ..+|-.+|..++..|.+ .|..+=....++.|.+.|+.-|..+|+.||..+=+.
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~ 113 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFM 113 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhc
Confidence 3445554 45677788888888765 467777778888999999999999999999877542
Q ss_pred ---CCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCC
Q 007517 342 ---GKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQ 379 (600)
Q Consensus 342 ---g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 379 (600)
.+-+-|.+++++|.. +|+-||.+++..|++.+++.+.
T Consensus 114 hyp~Qq~c~i~lL~qME~-~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 114 HYPRQQECAIDLLEQMEN-NGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred cCcHHHHHHHHHHHHHHH-cCCCCcHHHHHHHHHHhccccH
Confidence 134557777777765 4777777777777777766654
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.015 Score=56.03 Aligned_cols=129 Identities=13% Similarity=0.156 Sum_probs=99.5
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhh-cCCHHHHHHHHHhC--CCCCCHHHHHHHHHH
Q 007517 329 VTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGR-AGQVEDAMKLIEAM--PFEPDAIIWGSLLGA 405 (600)
Q Consensus 329 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~-~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~ 405 (600)
.+|..++..+-+.+..+.|+++|....+.. ..+..+|.....+-.+ .++.+.|.++|+.. .+..+...|...+.-
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~--~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK--RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 467778888888889999999999998642 2345666666666455 56677799999987 445678889999999
Q ss_pred HHHcCCHHHHHHHHHHHhccCCCCC---chHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007517 406 CRTHMKLDLAEVAAKKLLQLEPKNA---GPYILLSNIYASQGRFHDVAELRKNMRKR 459 (600)
Q Consensus 406 ~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 459 (600)
+...++.+.|..+|++++..-|... ..|...+..=.+.|+++.+.++.+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999999999998766543 35777777778889999999999998764
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.048 Score=46.27 Aligned_cols=90 Identities=4% Similarity=-0.028 Sum_probs=56.8
Q ss_pred HHHHHHHHcCCHHHHHhhhhhcCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC
Q 007517 267 VLITMYIKCGELVKGKLIFDNFAS---KDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGK 343 (600)
Q Consensus 267 ~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 343 (600)
++..-+...|++++|.++|+.+.. .+..-|-.|...+-..|++++|+..|....... +-|...+-.+-.++...|+
T Consensus 40 ~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~lG~ 118 (157)
T PRK15363 40 RYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLACDN 118 (157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHcCC
Confidence 344445566777777777765543 355566667777777777777777777766643 2334455556666667777
Q ss_pred HHHHHHHHHHhHhc
Q 007517 344 VKEGREIFESMKSK 357 (600)
Q Consensus 344 ~~~a~~~~~~~~~~ 357 (600)
.+.|++.|+.....
T Consensus 119 ~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 119 VCYAIKALKAVVRI 132 (157)
T ss_pred HHHHHHHHHHHHHH
Confidence 77777777766554
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.21 Score=46.89 Aligned_cols=173 Identities=10% Similarity=0.028 Sum_probs=101.3
Q ss_pred HHHHHHHcCCHHHHHhhhhhcCC--CC-HHH---HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc-
Q 007517 268 LITMYIKCGELVKGKLIFDNFAS--KD-IVM---WNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSY- 340 (600)
Q Consensus 268 li~~y~~~g~~~~A~~~~~~~~~--~~-~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~- 340 (600)
....+.+.|++++|.+.|+.+.. |+ ... .-.++.+|.+.+++++|...|++..+.-..-....+...+.+.+.
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~ 117 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNM 117 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhh
Confidence 34445667888888888877754 21 122 233556777888888888888888775222122333333333321
Q ss_pred -cC---------------C---HHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHH
Q 007517 341 -TG---------------K---VKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAMPFEPDAIIWGS 401 (600)
Q Consensus 341 -~g---------------~---~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ 401 (600)
.+ + ...|...|+.+.+++ |+ ..-..+|..-+..+...--.. --.
T Consensus 118 ~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~y---P~-------------S~ya~~A~~rl~~l~~~la~~-e~~ 180 (243)
T PRK10866 118 ALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGY---PN-------------SQYTTDATKRLVFLKDRLAKY-ELS 180 (243)
T ss_pred hcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHC---cC-------------ChhHHHHHHHHHHHHHHHHHH-HHH
Confidence 10 1 223444455554443 22 223344444333321000000 013
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhccCCCC---CchHHHHHHHHHhcCCchHHHHHHHHHH
Q 007517 402 LLGACRTHMKLDLAEVAAKKLLQLEPKN---AGPYILLSNIYASQGRFHDVAELRKNMR 457 (600)
Q Consensus 402 ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 457 (600)
+..-|.+.|.+.-|..-++.+++.-|+. +.....+..+|...|..++|.++.+.+.
T Consensus 181 ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 181 VAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 3455788899999999999999877765 3456678899999999999999887664
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.15 Score=46.55 Aligned_cols=167 Identities=12% Similarity=0.001 Sum_probs=108.8
Q ss_pred HHHHHHHHHHcCCHHHHHhhhhhcCC--CCH--------HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 007517 265 ASVLITMYIKCGELVKGKLIFDNFAS--KDI--------VMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGV 334 (600)
Q Consensus 265 ~~~li~~y~~~g~~~~A~~~~~~~~~--~~~--------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 334 (600)
+++|+..|.-..-+++-...|+.-.. ..+ ..-+.++....-+|.+.-.+.++++.++..-+-+......+
T Consensus 139 qesLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~L 218 (366)
T KOG2796|consen 139 QESLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGL 218 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHH
Confidence 45565555555555555555543332 222 33456667777788888889999999887555566777778
Q ss_pred HHHHhccCCHHHHHHHHHHhHhcCC----CCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCC--CCHHHHHHHHHHHHH
Q 007517 335 LSACSYTGKVKEGREIFESMKSKYL----VEPKTEHYACMVDLLGRAGQVEDAMKLIEAMPFE--PDAIIWGSLLGACRT 408 (600)
Q Consensus 335 l~a~~~~g~~~~a~~~~~~~~~~~~----~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--p~~~~~~~ll~~~~~ 408 (600)
.+.-.+.|+.+.|..+|+...+..+ +.....+.......|.-++++.+|...+.+.+.. .|+...|.=.-+..-
T Consensus 219 gr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllY 298 (366)
T KOG2796|consen 219 GRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLY 298 (366)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHH
Confidence 8888899999999999997665432 2223333344445666777888888888877322 234444443334445
Q ss_pred cCCHHHHHHHHHHHhccCCCCCc
Q 007517 409 HMKLDLAEVAAKKLLQLEPKNAG 431 (600)
Q Consensus 409 ~g~~~~a~~~~~~~~~~~p~~~~ 431 (600)
.|+...|.+..+.+++..|....
T Consensus 299 lg~l~DAiK~~e~~~~~~P~~~l 321 (366)
T KOG2796|consen 299 LGKLKDALKQLEAMVQQDPRHYL 321 (366)
T ss_pred HHHHHHHHHHHHHHhccCCccch
Confidence 67888888888888888887533
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.017 Score=58.01 Aligned_cols=109 Identities=10% Similarity=0.097 Sum_probs=71.7
Q ss_pred HHHHHHhcCCHHHHHHHHHhcccC------ChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCchhHhhHHHHHhhh
Q 007517 167 MILGLGQNGEVQKARVVFDQMREK------DDATWSGMIKVYERKGYELEVIDLFTLMQKEGVRVNFPSLISVLSVCASL 240 (600)
Q Consensus 167 li~~~~~~g~~~~A~~~f~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 240 (600)
+++......+++.+..++.+.... -..|..++|+.|...|..++++.+++.=.+.|+-||.+|++.++..+.+.
T Consensus 72 fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lmd~fl~~ 151 (429)
T PF10037_consen 72 FVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLMDHFLKK 151 (429)
T ss_pred HHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHHHHHhhc
Confidence 344444444555555555544421 23345677778888888888888777777778888888888888888888
Q ss_pred cchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHc
Q 007517 241 ASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKC 275 (600)
Q Consensus 241 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~ 275 (600)
|++..|.++...|...+...+..++..-+..+.+.
T Consensus 152 ~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 152 GNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred ccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 88888888777777776655555555444444444
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.0086 Score=59.52 Aligned_cols=63 Identities=16% Similarity=0.090 Sum_probs=41.8
Q ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q 007517 363 KTEHYACMVDLLGRAGQVEDAMKLIEAM-PFEPDA----IIWGSLLGACRTHMKLDLAEVAAKKLLQL 425 (600)
Q Consensus 363 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 425 (600)
+...++.+..+|.+.|++++|...|++. .+.|+. ..|..+..+|...|+.++|+..+++++++
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3566666777777777777777777664 445553 34666777777777777777777777665
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.0075 Score=44.46 Aligned_cols=63 Identities=16% Similarity=0.271 Sum_probs=49.5
Q ss_pred HHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchH
Q 007517 371 VDLLGRAGQVEDAMKLIEAM-PFEP-DAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPY 433 (600)
Q Consensus 371 i~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 433 (600)
-..|.+.+++++|.++++.+ ...| +...|......+...|+++.|...+++.++..|+++...
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~ 66 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDAR 66 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHH
Confidence 35678888888888888887 4445 466677788888889999999999999999999875443
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=96.54 E-value=1.5 Score=47.27 Aligned_cols=181 Identities=15% Similarity=0.180 Sum_probs=103.6
Q ss_pred hHHHHHHHHH--hCCChHHHHHHHhhCC---CCCcchHHHHHHHHHcCCCHHHHHHHHccCCCCCc--chHHHHHHHHHh
Q 007517 8 SWTAMVRGYV--EEGMITEAGTLFWQMP---EKNVVSWTVMLGGFIRDSRIDDARRLFDMMPEKDV--VAQTNMVLGYCQ 80 (600)
Q Consensus 8 ~~~~ll~~~~--~~g~~~~A~~~~~~m~---~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~--~~~~~li~~~~~ 80 (600)
.|..++.++. +.|+.++|..+++... ..|..|...+-..|...|..++|..+|++....++ .....+..+|+|
T Consensus 43 ~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~eell~~lFmayvR 122 (932)
T KOG2053|consen 43 LYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPSEELLYHLFMAYVR 122 (932)
T ss_pred HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCcHHHHHHHHHHHHH
Confidence 3666666664 6788888888877665 34677888888888888999999999988875433 344455566777
Q ss_pred cCChH----HHHHHHhhCCCCCcccHHHHHHHHHhC-CChHH---------HHHHHhhcCC-C-Ccch---HHHHHHHHh
Q 007517 81 DGRVD----EGREIFDEMPKKNVISWTTMISGYVNN-NRIDV---------ARKLFEVMPE-K-NEVS---WTAMLMGYT 141 (600)
Q Consensus 81 ~g~~~----~A~~~~~~m~~~~~~~~~~li~~~~~~-g~~~~---------A~~~~~~m~~-p-~~~t---~~~ll~~~~ 141 (600)
.+++. .|.+++...+++--.-|+.+ +.+.+. ..+++ |.+.++.+.+ + ...+ ...-+..+.
T Consensus 123 ~~~yk~qQkaa~~LyK~~pk~~yyfWsV~-Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~ 201 (932)
T KOG2053|consen 123 EKSYKKQQKAALQLYKNFPKRAYYFWSVI-SLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILE 201 (932)
T ss_pred HHHHHHHHHHHHHHHHhCCcccchHHHHH-HHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHH
Confidence 76654 46677776666555556543 333322 22222 3333333333 2 1111 111122334
Q ss_pred cCCChHHHHHHHhhCC-----CCCccchhHHHHHHHhcCCHHHHHHHHHhccc
Q 007517 142 QCGRIQDAWELFKAMP-----MKSVVASNSMILGLGQNGEVQKARVVFDQMRE 189 (600)
Q Consensus 142 ~~g~~~~a~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~ 189 (600)
..|++++|..++..-. ..+...-+.-++.+.+.+++.+-.++-.++..
T Consensus 202 ~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~ 254 (932)
T KOG2053|consen 202 LQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLE 254 (932)
T ss_pred hcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 4566777776663222 33333344555666667776665555555443
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.32 Score=50.09 Aligned_cols=125 Identities=19% Similarity=0.196 Sum_probs=73.7
Q ss_pred HHHHHHHcCCHHHHHhhhhhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHH
Q 007517 268 LITMYIKCGELVKGKLIFDNFASKDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEG 347 (600)
Q Consensus 268 li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 347 (600)
...++...|+.++|..+ .+.+|-.+-++++-+++-. .+..+...+..-+.+...+..|
T Consensus 709 AAEmLiSaGe~~KAi~i------------------~~d~gW~d~lidI~rkld~----~ere~l~~~a~ylk~l~~~gLA 766 (1081)
T KOG1538|consen 709 AAEMLISAGEHVKAIEI------------------CGDHGWVDMLIDIARKLDK----AEREPLLLCATYLKKLDSPGLA 766 (1081)
T ss_pred HHHHhhcccchhhhhhh------------------hhcccHHHHHHHHHhhcch----hhhhHHHHHHHHHhhccccchH
Confidence 44555556666666443 3445555555555544422 2334444444445556667777
Q ss_pred HHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCCHHH-HHH----------HHHHHHHcCCHHHH
Q 007517 348 REIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAMP-FEPDAII-WGS----------LLGACRTHMKLDLA 415 (600)
Q Consensus 348 ~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~~-~~~----------ll~~~~~~g~~~~a 415 (600)
-++|.+|-. ...++++....+++++|..+-++.| +.||+.. |.. --.+|.+.|+..+|
T Consensus 767 aeIF~k~gD----------~ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA 836 (1081)
T KOG1538|consen 767 AEIFLKMGD----------LKSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREA 836 (1081)
T ss_pred HHHHHHhcc----------HHHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhhhhHHHHHHHHHHhcchHHH
Confidence 788877643 2357788888888888888888873 4444332 211 22456667777777
Q ss_pred HHHHHHHhc
Q 007517 416 EVAAKKLLQ 424 (600)
Q Consensus 416 ~~~~~~~~~ 424 (600)
.++++++..
T Consensus 837 ~~vLeQLtn 845 (1081)
T KOG1538|consen 837 VQVLEQLTN 845 (1081)
T ss_pred HHHHHHhhh
Confidence 777777654
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.1 Score=53.49 Aligned_cols=57 Identities=18% Similarity=0.223 Sum_probs=29.8
Q ss_pred cchHHHHHHHHHhCCChHHHHHHHhhCCCCCcchHHHHHHHHHcCCCHHHHHHHHccCC
Q 007517 6 VVSWTAMVRGYVEEGMITEAGTLFWQMPEKNVVSWTVMLGGFIRDSRIDDARRLFDMMP 64 (600)
Q Consensus 6 ~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~ 64 (600)
.+.+.+-+..|...|.+.+|.++-.--. ...-|.-|.......=+++-|++.|.+..
T Consensus 556 evp~~~~m~q~Ieag~f~ea~~iaclgV--v~~DW~~LA~~ALeAL~f~~ARkAY~rVR 612 (1081)
T KOG1538|consen 556 EVPQSAPMYQYIERGLFKEAYQIACLGV--TDTDWRELAMEALEALDFETARKAYIRVR 612 (1081)
T ss_pred cccccccchhhhhccchhhhhcccccce--ecchHHHHHHHHHhhhhhHHHHHHHHHHh
Confidence 3445566667778888888776432211 11124444433333445556665555443
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.0043 Score=40.45 Aligned_cols=42 Identities=26% Similarity=0.366 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHH
Q 007517 397 IIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSN 438 (600)
Q Consensus 397 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 438 (600)
.+|..+..++...|++++|+++++++++.+|+++..+..|+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 367788899999999999999999999999999877776653
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.75 Score=43.13 Aligned_cols=56 Identities=13% Similarity=0.080 Sum_probs=25.4
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCccCch-hH---hhHHHHHhhhcchHHHHHHHHHHHHc
Q 007517 199 IKVYERKGYELEVIDLFTLMQKEGVRVNFP-SL---ISVLSVCASLASLDHGRQVHAQLVRC 256 (600)
Q Consensus 199 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~---~~ll~~~~~~~~~~~a~~~~~~~~~~ 256 (600)
...+.+.|++++|.+.|+++...- |+.. .. ..+..++-+.++++.|...++..++.
T Consensus 39 A~~~~~~g~y~~Ai~~f~~l~~~y--P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~ 98 (243)
T PRK10866 39 AQQKLQDGNWKQAITQLEALDNRY--PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 98 (243)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 334445556666666666555532 2211 11 12233444445555555555554443
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.49 Score=46.29 Aligned_cols=147 Identities=10% Similarity=0.018 Sum_probs=84.5
Q ss_pred hhhcchHHHHHHHHHHHHcCCCCchhhHHHHHH--HHHHcCCHHHHHhhhhhcCCCCHH---------------HHHHHH
Q 007517 238 ASLASLDHGRQVHAQLVRCQFDVDVYVASVLIT--MYIKCGELVKGKLIFDNFASKDIV---------------MWNSII 300 (600)
Q Consensus 238 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~--~y~~~g~~~~A~~~~~~~~~~~~~---------------~~~~li 300 (600)
...|+.+.|.++-..+++..- .+ .+..++. ++--.++.+.|...|++...-|+. .|..=.
T Consensus 180 ~~~~~~~~a~~ea~~ilkld~-~n--~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~g 256 (486)
T KOG0550|consen 180 AFLGDYDEAQSEAIDILKLDA-TN--AEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERG 256 (486)
T ss_pred hhcccchhHHHHHHHHHhccc-ch--hHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhh
Confidence 455666666666666655431 11 1111111 222346667777777665542221 222223
Q ss_pred HHHHhcCChHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCC-hHHHHHHHHHHhh
Q 007517 301 SGYAQYGLGEKSLKVFHEMFSS---GVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPK-TEHYACMVDLLGR 376 (600)
Q Consensus 301 ~~~~~~g~~~~A~~~~~~m~~~---g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~ 376 (600)
.-..+.|++.+|.+.|.+.+.. .++|+...|.....+..+.|+.++|..--+...+ +.|. +..|..-..++.-
T Consensus 257 N~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~---iD~syikall~ra~c~l~ 333 (486)
T KOG0550|consen 257 NDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK---IDSSYIKALLRRANCHLA 333 (486)
T ss_pred hhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh---cCHHHHHHHHHHHHHHHH
Confidence 3456788888888888888753 2444455566666677788888888887776653 2222 2233333445566
Q ss_pred cCCHHHHHHHHHhC
Q 007517 377 AGQVEDAMKLIEAM 390 (600)
Q Consensus 377 ~g~~~~A~~~~~~m 390 (600)
.++|++|.+-+++.
T Consensus 334 le~~e~AV~d~~~a 347 (486)
T KOG0550|consen 334 LEKWEEAVEDYEKA 347 (486)
T ss_pred HHHHHHHHHHHHHH
Confidence 67788888887765
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.044 Score=53.40 Aligned_cols=88 Identities=17% Similarity=0.149 Sum_probs=70.3
Q ss_pred HHHhhcCCHHHHHHHHHhC--------CCC---------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHH
Q 007517 372 DLLGRAGQVEDAMKLIEAM--------PFE---------PDAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYI 434 (600)
Q Consensus 372 ~~~~~~g~~~~A~~~~~~m--------~~~---------p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 434 (600)
..|.+.|++..|...|++. +.. .-..++..|..+|.+.+++..|+....+.++++|+|.....
T Consensus 216 n~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALy 295 (397)
T KOG0543|consen 216 NVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALY 295 (397)
T ss_pred hHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHH
Confidence 4456667776666666553 111 12345677778888999999999999999999999999999
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHhC
Q 007517 435 LLSNIYASQGRFHDVAELRKNMRKR 459 (600)
Q Consensus 435 ~l~~~~~~~g~~~~a~~~~~~m~~~ 459 (600)
.-+.+|...|.++.|+..|+++.+.
T Consensus 296 RrG~A~l~~~e~~~A~~df~ka~k~ 320 (397)
T KOG0543|consen 296 RRGQALLALGEYDLARDDFQKALKL 320 (397)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHh
Confidence 9999999999999999999999864
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.062 Score=50.85 Aligned_cols=101 Identities=12% Similarity=0.101 Sum_probs=67.8
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhC----CCCC-CHHHHHHHH
Q 007517 330 TLVGVLSACSYTGKVKEGREIFESMKSKYLVEP-KTEHYACMVDLLGRAGQVEDAMKLIEAM----PFEP-DAIIWGSLL 403 (600)
Q Consensus 330 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p-~~~~~~~ll 403 (600)
.|...+......|++++|...|+.+.+.+.-.+ ....+-.+...|...|++++|...|+.+ |..| ....+..+.
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 344444333455777888877877777542111 1345667778888888888888888777 2222 244455566
Q ss_pred HHHHHcCCHHHHHHHHHHHhccCCCCC
Q 007517 404 GACRTHMKLDLAEVAAKKLLQLEPKNA 430 (600)
Q Consensus 404 ~~~~~~g~~~~a~~~~~~~~~~~p~~~ 430 (600)
..+...|+.+.|...++++++..|++.
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 677788999999999999999888863
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.30 E-value=2 Score=45.79 Aligned_cols=99 Identities=9% Similarity=0.171 Sum_probs=59.8
Q ss_pred HHHHHcCCCHHHHHHHHccCCCC-----CcchHHHHHHHHHhcCChHHHHHHHhhCCCCCcccHHHHHHHHHhCCChHHH
Q 007517 44 LGGFIRDSRIDDARRLFDMMPEK-----DVVAQTNMVLGYCQDGRVDEGREIFDEMPKKNVISWTTMISGYVNNNRIDVA 118 (600)
Q Consensus 44 l~~~~~~g~~~~A~~~~~~m~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A 118 (600)
+..+.+.+.+++|..+-+..... -...+...|..+.-.|++++|-.+.-.|...+..-|.--+.-+...++....
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~I 442 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDI 442 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccchh
Confidence 44555667777777776665532 1235666777777778888887777777777777777777767666665443
Q ss_pred HHHHhhcCC-CCcchHHHHHHHHhc
Q 007517 119 RKLFEVMPE-KNEVSWTAMLMGYTQ 142 (600)
Q Consensus 119 ~~~~~~m~~-p~~~t~~~ll~~~~~ 142 (600)
..++=.-.. .+...|..+|-.+..
T Consensus 443 a~~lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 443 APYLPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred hccCCCCCcccCchHHHHHHHHHHH
Confidence 322211111 234456666655554
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.034 Score=49.53 Aligned_cols=96 Identities=15% Similarity=0.227 Sum_probs=68.6
Q ss_pred HHHHHhc--ccCChhhHHHHHHHHHHc-----CChHHHHHHHHHHHHcCCccCchhHhhHHHHHhhh-------------
Q 007517 181 RVVFDQM--REKDDATWSGMIKVYERK-----GYELEVIDLFTLMQKEGVRVNFPSLISVLSVCASL------------- 240 (600)
Q Consensus 181 ~~~f~~~--~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~------------- 240 (600)
...|++. ..+|-.+|..++..|.+. |..+=....++.|.+-|+.-|..+|+.||..+-+.
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~ 113 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFM 113 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhc
Confidence 4556665 456777888888877654 66666777788888888888888888888876431
Q ss_pred ---cchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcC
Q 007517 241 ---ASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCG 276 (600)
Q Consensus 241 ---~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g 276 (600)
.+-+.|..++++|...|+-||..++..|++.+++.+
T Consensus 114 hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 114 HYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKS 152 (228)
T ss_pred cCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcccc
Confidence 234567777777777777777777777777666544
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.018 Score=55.65 Aligned_cols=127 Identities=10% Similarity=-0.015 Sum_probs=86.9
Q ss_pred hHhhHHHHHhhhcchHHHHHHHHHHHH----cCCC-CchhhHHHHHHHHHHcCCHHHHHhhhhhcC-------CC--CHH
Q 007517 229 SLISVLSVCASLASLDHGRQVHAQLVR----CQFD-VDVYVASVLITMYIKCGELVKGKLIFDNFA-------SK--DIV 294 (600)
Q Consensus 229 t~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~-~~~~~~~~li~~y~~~g~~~~A~~~~~~~~-------~~--~~~ 294 (600)
.|..+-+.+.-+|+++.|...|+.-.. .|-. .....+..|.++|.-.|+++.|.+.|.... .+ ...
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 455555566667889999888875433 2311 234566778888999999999988887532 23 334
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHH----CC-CCCCHHHHHHHHHHHhccCCHHHHHHHHHHhH
Q 007517 295 MWNSIISGYAQYGLGEKSLKVFHEMFS----SG-VMPDDVTLVGVLSACSYTGKVKEGREIFESMK 355 (600)
Q Consensus 295 ~~~~li~~~~~~g~~~~A~~~~~~m~~----~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 355 (600)
+..+|...|.-..++++|+.++.+-.. .+ ..-....+-+|-.++...|.-++|..+.+.-.
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 667788888888889999988876432 11 22334567788888888898888887765543
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.19 E-value=1.9 Score=44.57 Aligned_cols=181 Identities=17% Similarity=0.148 Sum_probs=121.4
Q ss_pred CchhhHHHHHHHHHHcCCHHHHHhhhhhcCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC--CCHHHHHHH
Q 007517 260 VDVYVASVLITMYIKCGELVKGKLIFDNFASK---DIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVM--PDDVTLVGV 334 (600)
Q Consensus 260 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p~~~t~~~l 334 (600)
++..+|..-++.-.+.|+.+.+.-.|++..-| -...|--.+.-.-..|+.+-|-.++....+--++ |....+.+.
T Consensus 295 aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~ 374 (577)
T KOG1258|consen 295 AQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEAR 374 (577)
T ss_pred HHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHH
Confidence 34567778888888899999999999887654 2234444444334448888887777665543322 322333333
Q ss_pred HHHHhccCCHHHHHHHHHHhHhcCCCCCC-hHHHHHHHHHHhhcCCHHHHH---HHHHhC-CCCCCHHHHHHHHH-----
Q 007517 335 LSACSYTGKVKEGREIFESMKSKYLVEPK-TEHYACMVDLLGRAGQVEDAM---KLIEAM-PFEPDAIIWGSLLG----- 404 (600)
Q Consensus 335 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~---~~~~~m-~~~p~~~~~~~ll~----- 404 (600)
-+-..|+...|..+++.+.+++ |+ +..-.--+.+..|.|..+.+. +++... +.+-+..+...+.-
T Consensus 375 --f~e~~~n~~~A~~~lq~i~~e~---pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~ 449 (577)
T KOG1258|consen 375 --FEESNGNFDDAKVILQRIESEY---PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARL 449 (577)
T ss_pred --HHHhhccHHHHHHHHHHHHhhC---CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHH
Confidence 3456789999999999998864 44 444445567788899999888 555544 22223333222222
Q ss_pred HHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCC
Q 007517 405 ACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGR 445 (600)
Q Consensus 405 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 445 (600)
.+...++.+.|..++.++.+..|++-..|..+++.....+.
T Consensus 450 ~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~ 490 (577)
T KOG1258|consen 450 RYKIREDADLARIILLEANDILPDCKVLYLELIRFELIQPS 490 (577)
T ss_pred HHHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCCc
Confidence 23456899999999999999999998888888888776653
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.058 Score=44.49 Aligned_cols=47 Identities=23% Similarity=0.419 Sum_probs=25.4
Q ss_pred CCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC----CCCCCHHHHHHHHHH
Q 007517 359 LVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM----PFEPDAIIWGSLLGA 405 (600)
Q Consensus 359 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~~~~~~~ll~~ 405 (600)
.+.|+..+..+++.+|+..|++..|+++++.. +++-+..+|..|+.=
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W 97 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEW 97 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 34455555566666666666666665555544 444445555555543
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.009 Score=44.76 Aligned_cols=24 Identities=17% Similarity=0.391 Sum_probs=10.9
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHh
Q 007517 366 HYACMVDLLGRAGQVEDAMKLIEA 389 (600)
Q Consensus 366 ~~~~li~~~~~~g~~~~A~~~~~~ 389 (600)
+|+.+...|.+.|++++|++.|++
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~ 30 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEK 30 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHH
Confidence 344444444455555544444443
|
... |
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=96.12 E-value=1.7 Score=43.34 Aligned_cols=377 Identities=11% Similarity=0.092 Sum_probs=177.1
Q ss_pred HHHHHHHH--HhCCChHHHHHHHhhCCC------------------CCcchHHHHHHHHHcCCCHHHHHHHHccCCC---
Q 007517 9 WTAMVRGY--VEEGMITEAGTLFWQMPE------------------KNVVSWTVMLGGFIRDSRIDDARRLFDMMPE--- 65 (600)
Q Consensus 9 ~~~ll~~~--~~~g~~~~A~~~~~~m~~------------------~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~--- 65 (600)
|-.+..++ -+.+.+.+|++.+..... +|.+.-+..+..+...|++.+++.++++|.+
T Consensus 80 ~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~ll 159 (549)
T PF07079_consen 80 YLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLL 159 (549)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHh
Confidence 44444433 367888888888765541 2334456667888899999999999888862
Q ss_pred -----CCcchHHHHHHHHHhcCChHHHHHHHhhCCCCCcccHHHHHHHHHhCCChHHHHHHHhhcCCCCcchHHHHHHHH
Q 007517 66 -----KDVVAQTNMVLGYCQDGRVDEGREIFDEMPKKNVISWTTMISGYVNNNRIDVARKLFEVMPEKNEVSWTAMLMGY 140 (600)
Q Consensus 66 -----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~p~~~t~~~ll~~~ 140 (600)
-+..+||.++-++++.=-++- -+.+...=..-|--||-.|.+.=..-++... +... |....+..++.-.
T Consensus 160 krE~~w~~d~yd~~vlmlsrSYfLEl----~e~~s~dl~pdyYemilfY~kki~~~d~~~Y-~k~~-peeeL~s~imqhl 233 (549)
T PF07079_consen 160 KRECEWNSDMYDRAVLMLSRSYFLEL----KESMSSDLYPDYYEMILFYLKKIHAFDQRPY-EKFI-PEEELFSTIMQHL 233 (549)
T ss_pred hhhhcccHHHHHHHHHHHhHHHHHHH----HHhcccccChHHHHHHHHHHHHHHHHhhchH-HhhC-cHHHHHHHHHHHH
Confidence 367778876666655311111 1111111111244445455433111111000 0000 2222222222211
Q ss_pred hcC-----CChHHHHHHHhhCC--CCCccchhHHHHHHHhcCCHHHHHHHHHhcc--------cCChhhHHHHHHHHHHc
Q 007517 141 TQC-----GRIQDAWELFKAMP--MKSVVASNSMILGLGQNGEVQKARVVFDQMR--------EKDDATWSGMIKVYERK 205 (600)
Q Consensus 141 ~~~-----g~~~~a~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~--------~~~~~~~~~li~~~~~~ 205 (600)
.-. --+-.+...++.-- +....+...|+.-+.+ +.+++..+.+.+. ++=+.++..++....+.
T Consensus 234 fi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~ 311 (549)
T PF07079_consen 234 FIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQ 311 (549)
T ss_pred HhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 110 00111122222111 2222233344444443 3333333333222 23456788888888899
Q ss_pred CChHHHHHHHHHHHHcCCccCchhHhh-------HHHHHh-hh---cchHHHHHHHHHHHHcCCCCchhhHHHHH---HH
Q 007517 206 GYELEVIDLFTLMQKEGVRVNFPSLIS-------VLSVCA-SL---ASLDHGRQVHAQLVRCQFDVDVYVASVLI---TM 271 (600)
Q Consensus 206 g~~~~A~~~~~~m~~~g~~p~~~t~~~-------ll~~~~-~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~li---~~ 271 (600)
++..+|...+.-+.-- .|+...-.- +-+..+ .- -++..=..+++.+....+... ....-|+ .-
T Consensus 312 ~~T~~a~q~l~lL~~l--dp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrq-QLvh~L~~~Ak~ 388 (549)
T PF07079_consen 312 VQTEEAKQYLALLKIL--DPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQ-QLVHYLVFGAKH 388 (549)
T ss_pred HhHHHHHHHHHHHHhc--CCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHH-HHHHHHHHHHHH
Confidence 9998888877766542 333221111 111111 11 111122223333333222111 1111122 22
Q ss_pred HHHcCC-HHHHHhhhhhcCC---CCHHHHHHHH----HHHHhc---CChHHHHHHHHHHHHCCCCCCHHHH----HHHHH
Q 007517 272 YIKCGE-LVKGKLIFDNFAS---KDIVMWNSII----SGYAQY---GLGEKSLKVFHEMFSSGVMPDDVTL----VGVLS 336 (600)
Q Consensus 272 y~~~g~-~~~A~~~~~~~~~---~~~~~~~~li----~~~~~~---g~~~~A~~~~~~m~~~g~~p~~~t~----~~ll~ 336 (600)
+-+.|. -++|.++++.+.. .|..+-|.+. .+|.+. ....+-+.+-+-..+.|+.|-.+.= +.+..
T Consensus 389 lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaD 468 (549)
T PF07079_consen 389 LWEIGQCDEKALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLAD 468 (549)
T ss_pred HHhcCCccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHH
Confidence 334444 6667777766543 3444333322 223221 1233334444444556766644322 22222
Q ss_pred H--HhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHH
Q 007517 337 A--CSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAMPFEPDAIIWGS 401 (600)
Q Consensus 337 a--~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ 401 (600)
| +...|++.++.-+-.-+.+ +.|++.+|..+.-.+....++++|...+..+| |+..+|++
T Consensus 469 AEyLysqgey~kc~~ys~WL~~---iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP--~n~~~~ds 530 (549)
T PF07079_consen 469 AEYLYSQGEYHKCYLYSSWLTK---IAPSPQAYRLLGLCLMENKRYQEAWEYLQKLP--PNERMRDS 530 (549)
T ss_pred HHHHHhcccHHHHHHHHHHHHH---hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCC--CchhhHHH
Confidence 2 3345777776554444433 57788888888777778888888888888875 56666654
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.093 Score=43.27 Aligned_cols=52 Identities=13% Similarity=0.356 Sum_probs=46.7
Q ss_pred CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHH
Q 007517 323 GVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLL 374 (600)
Q Consensus 323 g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~ 374 (600)
...|+..++.+++.+++..|++..|.++.+...+.|+++-+...|..|+.=.
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 4679999999999999999999999999999999999988888998888643
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.56 Score=38.18 Aligned_cols=139 Identities=13% Similarity=0.101 Sum_probs=80.3
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHH
Q 007517 305 QYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAM 384 (600)
Q Consensus 305 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 384 (600)
-.|..++..++..+.... .+..-++.++--....-+-+-..+.++.+-+-+.+ ..+|++....
T Consensus 14 ldG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDi--------------s~C~NlKrVi 76 (161)
T PF09205_consen 14 LDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDI--------------SKCGNLKRVI 76 (161)
T ss_dssp HTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-G--------------GG-S-THHHH
T ss_pred HhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhhcCc--------------hhhcchHHHH
Confidence 356666777777666542 23334444443333333444444555554443222 3455555555
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCCc
Q 007517 385 KLIEAMPFEPDAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMRKRNVI 462 (600)
Q Consensus 385 ~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 462 (600)
.-+-.++ .+......-++.....|.-+.-.+++..+.+-+..+|....-++++|.+.|+..++.+++++.-++|++
T Consensus 77 ~C~~~~n--~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 77 ECYAKRN--KLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHTT-----HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 5554443 234445666788889999999999999888655556788899999999999999999999999999874
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.01 Score=44.44 Aligned_cols=63 Identities=19% Similarity=0.177 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhcc----CCCC---CchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007517 396 AIIWGSLLGACRTHMKLDLAEVAAKKLLQL----EPKN---AGPYILLSNIYASQGRFHDVAELRKNMRK 458 (600)
Q Consensus 396 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~p~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 458 (600)
..+++.+...|...|++++|+..+++++++ .+++ ..++..++.+|...|++++|.+++++..+
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 346888999999999999999999998864 2222 45688899999999999999999987653
|
... |
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=95.87 E-value=1.4 Score=40.16 Aligned_cols=48 Identities=19% Similarity=0.162 Sum_probs=23.1
Q ss_pred HHHHhccCCHHHHHHHHHHhHhcCCCCCC-hHHHHHHHHHHhhcCCHHH
Q 007517 335 LSACSYTGKVKEGREIFESMKSKYLVEPK-TEHYACMVDLLGRAGQVED 382 (600)
Q Consensus 335 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~ 382 (600)
..-|.+.|.+..|..-++.+.+++.-.+. ......++..|.+.|..+.
T Consensus 148 a~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~ 196 (203)
T PF13525_consen 148 ARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQA 196 (203)
T ss_dssp HHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHH
Confidence 34455666666666666666665411111 2233445555555555553
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.69 E-value=1.6 Score=39.82 Aligned_cols=195 Identities=19% Similarity=0.156 Sum_probs=118.5
Q ss_pred hhhHHHHHHHHHHcCCHHHHHhhhhhcC-----CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 007517 262 VYVASVLITMYIKCGELVKGKLIFDNFA-----SKDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLS 336 (600)
Q Consensus 262 ~~~~~~li~~y~~~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 336 (600)
..........+...+.+..+...+.... ......+......+...+....+.+.+.........+.. .......
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 137 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDL-AEALLAL 137 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcch-HHHHHHH
Confidence 3455556666666666666666665543 234455555566666666677777777776654333211 1111222
Q ss_pred -HHhccCCHHHHHHHHHHhHhcCCC--CCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC--HHHHHHHHHHHHHcC
Q 007517 337 -ACSYTGKVKEGREIFESMKSKYLV--EPKTEHYACMVDLLGRAGQVEDAMKLIEAM-PFEPD--AIIWGSLLGACRTHM 410 (600)
Q Consensus 337 -a~~~~g~~~~a~~~~~~~~~~~~~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~--~~~~~~ll~~~~~~g 410 (600)
++...|+.+.+...+...... .- ......+......+...++.++|...+... ...|+ ...+..+...+...+
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (291)
T COG0457 138 GALYELGDYEEALELYEKALEL-DPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLG 216 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHhc-CCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcc
Confidence 566777777777777776431 10 122334444444466677777777777766 32333 566777777777777
Q ss_pred CHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007517 411 KLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMRK 458 (600)
Q Consensus 411 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 458 (600)
+.+.|...+.......|.....+..+...+...|.++++...+....+
T Consensus 217 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 217 KYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred cHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 788888888888887776445566666666666667777777666654
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.044 Score=46.94 Aligned_cols=61 Identities=23% Similarity=0.252 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007517 398 IWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMRK 458 (600)
Q Consensus 398 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 458 (600)
....++..+...|+++.|....++++..+|-+...|..++.+|...|+..+|.++|+.+.+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4556677788899999999999999999999988999999999999999999999998853
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=95.65 E-value=1.1 Score=40.73 Aligned_cols=144 Identities=16% Similarity=0.155 Sum_probs=71.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCC-CC-HHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHH
Q 007517 296 WNSIISGYAQYGLGEKSLKVFHEMFSSGVM-PD-DVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDL 373 (600)
Q Consensus 296 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 373 (600)
+-.....+.+.|++++|++.|+++...-.. |- ......+..++.+.|+++.|...++...+.++-.|.. -+.....+
T Consensus 8 lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~-~~A~Y~~g 86 (203)
T PF13525_consen 8 LYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKA-DYALYMLG 86 (203)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTH-HHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcch-hhHHHHHH
Confidence 334455566677777777777777654211 11 1234455666777777777777777776655333321 11111111
Q ss_pred HhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCch-----------------HHHH
Q 007517 374 LGRAGQVEDAMKLIEAMPFEPDAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGP-----------------YILL 436 (600)
Q Consensus 374 ~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~-----------------~~~l 436 (600)
.+......... ......+....|...++.+++.-|+++.. -..+
T Consensus 87 ~~~~~~~~~~~-------------------~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~i 147 (203)
T PF13525_consen 87 LSYYKQIPGIL-------------------RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYI 147 (203)
T ss_dssp HHHHHHHHHHH--------------------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCccch-------------------hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11100000000 00111223345555555555555554321 2346
Q ss_pred HHHHHhcCCchHHHHHHHHHHhC
Q 007517 437 SNIYASQGRFHDVAELRKNMRKR 459 (600)
Q Consensus 437 ~~~~~~~g~~~~a~~~~~~m~~~ 459 (600)
+..|.+.|.+..|..-++.+.+.
T Consensus 148 a~~Y~~~~~y~aA~~r~~~v~~~ 170 (203)
T PF13525_consen 148 ARFYYKRGKYKAAIIRFQYVIEN 170 (203)
T ss_dssp HHHHHCTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHH
Confidence 78899999999999999988764
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.53 E-value=0.13 Score=41.67 Aligned_cols=89 Identities=17% Similarity=0.148 Sum_probs=68.4
Q ss_pred HHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCC----chHHHHHHHHHhcCC
Q 007517 372 DLLGRAGQVEDAMKLIEAM-PFEP-DAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNA----GPYILLSNIYASQGR 445 (600)
Q Consensus 372 ~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~----~~~~~l~~~~~~~g~ 445 (600)
-++...|+++.|++.|.+. .+-| ....||.-..+++-.|+.++|+.-+++++++.-+.. ..|+.-+..|-..|+
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 3567788888888888776 3333 567788888888889999999988888888643322 347777888888999
Q ss_pred chHHHHHHHHHHhCC
Q 007517 446 FHDVAELRKNMRKRN 460 (600)
Q Consensus 446 ~~~a~~~~~~m~~~g 460 (600)
-+.|+.-|+...+.|
T Consensus 131 dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 131 DDAARADFEAAAQLG 145 (175)
T ss_pred hHHHHHhHHHHHHhC
Confidence 999998888887766
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=95.49 E-value=0.094 Score=52.41 Aligned_cols=60 Identities=15% Similarity=0.107 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCCh----HHHHHHHHHHhhcCCHHHHHHHHHhC
Q 007517 328 DVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKT----EHYACMVDLLGRAGQVEDAMKLIEAM 390 (600)
Q Consensus 328 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m 390 (600)
...++.+..++...|++++|...|+...+. .|+. ..|..+..+|...|++++|.+.+++.
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL---~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrA 138 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALEL---NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTA 138 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 345666666677777777777777666542 4442 23666777777777777777766665
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.47 E-value=4.1 Score=42.88 Aligned_cols=241 Identities=10% Similarity=0.042 Sum_probs=117.3
Q ss_pred HHHHHHHHccCCCCCcchHHHHHHHHHhcCChHHHHHHHhhCCC-CCcccH------------HHHHHHHHhCCChHHHH
Q 007517 53 IDDARRLFDMMPEKDVVAQTNMVLGYCQDGRVDEGREIFDEMPK-KNVISW------------TTMISGYVNNNRIDVAR 119 (600)
Q Consensus 53 ~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~~~~------------~~li~~~~~~g~~~~A~ 119 (600)
+++|.+..+. .|.+..|..|...-.+.-.++.|+..|-+... +.+..- .+=|.+| -|++++|.
T Consensus 679 ledA~qfiEd--nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~--~g~feeae 754 (1189)
T KOG2041|consen 679 LEDAIQFIED--NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAF--YGEFEEAE 754 (1189)
T ss_pred hHHHHHHHhc--CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhh--hcchhHhh
Confidence 3444443333 34556677776666666667777766665543 111111 1112222 36677777
Q ss_pred HHHhhcCCCCcchHHHHHHHHhcCCChHHHHHHHhhCC--CCC---ccchhHHHHHHHhcCCHHHHHHHHHhcccCChhh
Q 007517 120 KLFEVMPEKNEVSWTAMLMGYTQCGRIQDAWELFKAMP--MKS---VVASNSMILGLGQNGEVQKARVVFDQMREKDDAT 194 (600)
Q Consensus 120 ~~~~~m~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~--~~~---~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~ 194 (600)
+++-+|.+.|. .+....+.|++-...++++.-- ..| ...++.+...+.....+++|.+.+..-...
T Consensus 755 k~yld~drrDL-----Aielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~---- 825 (1189)
T KOG2041|consen 755 KLYLDADRRDL-----AIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT---- 825 (1189)
T ss_pred hhhhccchhhh-----hHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch----
Confidence 77766654332 2344445555555555554322 111 123444555555544555555444432210
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCccCchhHhhHHHHHhhhcchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHH
Q 007517 195 WSGMIKVYERKGYELEVIDLFTLMQKEGVRVNFPSLISVLSVCASLASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIK 274 (600)
Q Consensus 195 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~ 274 (600)
...+.++.+...+++-..+- ..++-|...+-.+...+.+.|.-++|.+.|-+ .+.+ .+.+..+..
T Consensus 826 -e~~~ecly~le~f~~LE~la-----~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr---~s~p------kaAv~tCv~ 890 (1189)
T KOG2041|consen 826 -ENQIECLYRLELFGELEVLA-----RTLPEDSELLPVMADMFTSVGMCDQAVEAYLR---RSLP------KAAVHTCVE 890 (1189)
T ss_pred -HhHHHHHHHHHhhhhHHHHH-----HhcCcccchHHHHHHHHHhhchHHHHHHHHHh---ccCc------HHHHHHHHH
Confidence 01222222222222222111 12334555556666777777777777665532 2211 234556666
Q ss_pred cCCHHHHHhhhhhcCCCCHHHHHH--------------HHHHHHhcCChHHHHHHHHHHHH
Q 007517 275 CGELVKGKLIFDNFASKDIVMWNS--------------IISGYAQYGLGEKSLKVFHEMFS 321 (600)
Q Consensus 275 ~g~~~~A~~~~~~~~~~~~~~~~~--------------li~~~~~~g~~~~A~~~~~~m~~ 321 (600)
..++.+|.++-++..-|.+.+.-+ -|..+.+.|+.-+|-+++.+|.+
T Consensus 891 LnQW~~avelaq~~~l~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae 951 (1189)
T KOG2041|consen 891 LNQWGEAVELAQRFQLPQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAE 951 (1189)
T ss_pred HHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhH
Confidence 777777777776655554433211 13344556666666666666643
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=95.44 E-value=0.8 Score=46.10 Aligned_cols=158 Identities=15% Similarity=0.163 Sum_probs=102.4
Q ss_pred HHH--HHHHHHHHhc-----CChHHHHHHHHHHHH-CCCCCCHH-HHHHHHHHHh---------ccCCHHHHHHHHHHhH
Q 007517 294 VMW--NSIISGYAQY-----GLGEKSLKVFHEMFS-SGVMPDDV-TLVGVLSACS---------YTGKVKEGREIFESMK 355 (600)
Q Consensus 294 ~~~--~~li~~~~~~-----g~~~~A~~~~~~m~~-~g~~p~~~-t~~~ll~a~~---------~~g~~~~a~~~~~~~~ 355 (600)
..| ...+.|.... ...+.|+.+|.+... +.+.|+.. .|..+..++. ......+|.++-+...
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 455 5555554431 134678889998872 23567654 3333222211 1234556666666666
Q ss_pred hcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchH
Q 007517 356 SKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM-PFEPD-AIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPY 433 (600)
Q Consensus 356 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 433 (600)
+-. +.|+.....+..++.-.|+++.|..+|++. .+.|| ..+|......+...|+.++|.+.++++++++|.....-
T Consensus 332 eld--~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~ 409 (458)
T PRK11906 332 DIT--TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAV 409 (458)
T ss_pred hcC--CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHH
Confidence 531 446777778888888888899999999988 56676 55677777777888999999999999999999864443
Q ss_pred H--HHHHHHHhcCCchHHHHHHH
Q 007517 434 I--LLSNIYASQGRFHDVAELRK 454 (600)
Q Consensus 434 ~--~l~~~~~~~g~~~~a~~~~~ 454 (600)
. ..++.|...+ .++|.+++-
T Consensus 410 ~~~~~~~~~~~~~-~~~~~~~~~ 431 (458)
T PRK11906 410 VIKECVDMYVPNP-LKNNIKLYY 431 (458)
T ss_pred HHHHHHHHHcCCc-hhhhHHHHh
Confidence 3 3344566655 466666544
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.34 E-value=0.39 Score=40.12 Aligned_cols=59 Identities=24% Similarity=0.271 Sum_probs=37.7
Q ss_pred HHhhcCCHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCc
Q 007517 373 LLGRAGQVEDAMKLIEAM----PFEP-DAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAG 431 (600)
Q Consensus 373 ~~~~~g~~~~A~~~~~~m----~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 431 (600)
...+.|++++|.+.|+.+ |..| ..-.--.|+.++.+.++++.|...+++.++++|.++.
T Consensus 19 ~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~ 82 (142)
T PF13512_consen 19 EALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN 82 (142)
T ss_pred HHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC
Confidence 334566677776666665 2222 2333445667777778888888888888887777643
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=95.24 E-value=0.35 Score=48.54 Aligned_cols=117 Identities=10% Similarity=0.088 Sum_probs=88.0
Q ss_pred CHHHHHHHHHHhHhcCCCCCC-hHHHHHHHHHHhh---------cCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcC
Q 007517 343 KVKEGREIFESMKSKYLVEPK-TEHYACMVDLLGR---------AGQVEDAMKLIEAM-PFEP-DAIIWGSLLGACRTHM 410 (600)
Q Consensus 343 ~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~---------~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g 410 (600)
..+.|..+|.+......+.|+ ...|..+...+.. .....+|.++.++. .+.| |+.....+..+....|
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhc
Confidence 467788889988854456666 4555555544332 23345666666655 3333 6777777777778888
Q ss_pred CHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007517 411 KLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMRKR 459 (600)
Q Consensus 411 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 459 (600)
+.+.|...|+++..++|+.+..+...+....-.|+.++|.+.+++..+.
T Consensus 353 ~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL 401 (458)
T PRK11906 353 QAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQL 401 (458)
T ss_pred chhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Confidence 8999999999999999999999999999999999999999998875543
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.10 E-value=1.2 Score=42.02 Aligned_cols=101 Identities=16% Similarity=0.074 Sum_probs=65.3
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcC---CHHHHHHHHHhC-CCCC-CHHHHHH
Q 007517 327 DDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAG---QVEDAMKLIEAM-PFEP-DAIIWGS 401 (600)
Q Consensus 327 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~m-~~~p-~~~~~~~ 401 (600)
|...|..|-.+|...|+.+.|...|....+-. .+++..+..+..++.... ...++.++|+++ ...| |+.....
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~--g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l 232 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLA--GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL 232 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence 44566666667777777777777776665532 345566666665554332 345677777776 3445 3445555
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhccCCCC
Q 007517 402 LLGACRTHMKLDLAEVAAKKLLQLEPKN 429 (600)
Q Consensus 402 ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 429 (600)
|...+...|++.+|...+++|++..|.+
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~lp~~ 260 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLLPAD 260 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCCCC
Confidence 6667788888888888888888877665
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.02 E-value=0.23 Score=48.62 Aligned_cols=138 Identities=14% Similarity=0.050 Sum_probs=97.0
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCC
Q 007517 300 ISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQ 379 (600)
Q Consensus 300 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 379 (600)
...|.+.|++..|...|++.... |. +...-+.++..... ..-..++..+.-.|.+.++
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~------------l~-~~~~~~~ee~~~~~---------~~k~~~~lNlA~c~lKl~~ 272 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSF------------LE-YRRSFDEEEQKKAE---------ALKLACHLNLAACYLKLKE 272 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHH------------hh-ccccCCHHHHHHHH---------HHHHHHhhHHHHHHHhhhh
Confidence 35677888888888888876542 11 01111112222211 1224467778889999999
Q ss_pred HHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHH-HHHHHHH
Q 007517 380 VEDAMKLIEAM-PF-EPDAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDV-AELRKNM 456 (600)
Q Consensus 380 ~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a-~~~~~~m 456 (600)
+.+|++..+.. .. ++|....-.=..+|...|+++.|...|+++++++|+|-..-..|+.+-.+...+.+. .++|..|
T Consensus 273 ~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~m 352 (397)
T KOG0543|consen 273 YKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANM 352 (397)
T ss_pred HHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988877 22 456777777788999999999999999999999999977777777776666555544 7888888
Q ss_pred HhC
Q 007517 457 RKR 459 (600)
Q Consensus 457 ~~~ 459 (600)
-.+
T Consensus 353 F~k 355 (397)
T KOG0543|consen 353 FAK 355 (397)
T ss_pred hhc
Confidence 653
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.92 E-value=0.17 Score=46.94 Aligned_cols=91 Identities=19% Similarity=0.311 Sum_probs=56.6
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC---CCchHHH
Q 007517 366 HYACMVDLLGRAGQVEDAMKLIEAM-------PFEPDAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPK---NAGPYIL 435 (600)
Q Consensus 366 ~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~---~~~~~~~ 435 (600)
.|+.-++.| +.|++.+|...|... ...||..-| |..++...|+++.|...|..+.+-.|+ -|..+.-
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yW--LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK 220 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYW--LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK 220 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHH--HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence 455444433 445566666666544 233455555 566677777777777777777765444 3455666
Q ss_pred HHHHHHhcCCchHHHHHHHHHHhC
Q 007517 436 LSNIYASQGRFHDVAELRKNMRKR 459 (600)
Q Consensus 436 l~~~~~~~g~~~~a~~~~~~m~~~ 459 (600)
|+.+..+.|+.++|..++++..++
T Consensus 221 lg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 221 LGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHH
Confidence 777777777777777777777653
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.87 E-value=3 Score=38.01 Aligned_cols=197 Identities=15% Similarity=0.117 Sum_probs=131.8
Q ss_pred hhHhhHHHHHhhhcchHHHHHHHHHHHHc-CCCCchhhHHHHHHHHHHcCCHHHHHhhhhhcCC--C-CHHHHHHHHH-H
Q 007517 228 PSLISVLSVCASLASLDHGRQVHAQLVRC-QFDVDVYVASVLITMYIKCGELVKGKLIFDNFAS--K-DIVMWNSIIS-G 302 (600)
Q Consensus 228 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~-~ 302 (600)
..+......+...+.+..+...+...... ........+..+...+...++...+.+.+..... + +...+..... .
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGA 139 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHH
Confidence 44444455555555566555555555442 2234445555566666667777777777776654 2 2122333333 6
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCC----CHHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCC-ChHHHHHHHHHHhhc
Q 007517 303 YAQYGLGEKSLKVFHEMFSSGVMP----DDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEP-KTEHYACMVDLLGRA 377 (600)
Q Consensus 303 ~~~~g~~~~A~~~~~~m~~~g~~p----~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~ 377 (600)
+...|+++.|...|.+... ..| ....+......+...++.+.+...+....... +. ....+..+...+...
T Consensus 140 ~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 215 (291)
T COG0457 140 LYELGDYEEALELYEKALE--LDPELNELAEALLALGALLEALGRYEEALELLEKALKLN--PDDDAEALLNLGLLYLKL 215 (291)
T ss_pred HHHcCCHHHHHHHHHHHHh--cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhC--cccchHHHHHhhHHHHHc
Confidence 8889999999999999855 333 23344444444667889999999999887642 33 467788888999999
Q ss_pred CCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC
Q 007517 378 GQVEDAMKLIEAM-PFEPD-AIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPK 428 (600)
Q Consensus 378 g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 428 (600)
+++++|...+... ...|+ ...+..+...+...+..+.+...+.+.....|.
T Consensus 216 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 216 GKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred ccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 9999999998877 33454 455556666666777899999999999998886
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.73 E-value=0.34 Score=44.81 Aligned_cols=99 Identities=17% Similarity=0.121 Sum_probs=79.4
Q ss_pred HHhhhhhcC--CCCHHHHHHHHHHHHhc-----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC-----------
Q 007517 281 GKLIFDNFA--SKDIVMWNSIISGYAQY-----GLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTG----------- 342 (600)
Q Consensus 281 A~~~~~~~~--~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g----------- 342 (600)
.+..|.... ++|-.+|-+++..|..+ +..+-....++.|.+.|+.-|..+|..||..+-+..
T Consensus 53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F 132 (406)
T KOG3941|consen 53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVF 132 (406)
T ss_pred hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHH
Confidence 355666666 57888999998888754 566777778899999999999999999999875532
Q ss_pred -----CHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCH
Q 007517 343 -----KVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQV 380 (600)
Q Consensus 343 -----~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 380 (600)
+-+-+..++++|.. +|+.||.++-..|+.++++.|-.
T Consensus 133 ~HYP~QQ~C~I~vLeqME~-hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 133 LHYPQQQNCAIKVLEQMEW-HGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred hhCchhhhHHHHHHHHHHH-cCCCCchHHHHHHHHHhcccccc
Confidence 23457889999976 69999999999999999998864
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=94.70 E-value=4.8 Score=41.96 Aligned_cols=78 Identities=15% Similarity=0.023 Sum_probs=36.0
Q ss_pred CChHHHHHHHhhCC--CCCccchh-HHHHHHHhcCCHHHHHHHHHhcccC-------ChhhHHHHHHHHHHcCChHHHHH
Q 007517 144 GRIQDAWELFKAMP--MKSVVASN-SMILGLGQNGEVQKARVVFDQMREK-------DDATWSGMIKVYERKGYELEVID 213 (600)
Q Consensus 144 g~~~~a~~~~~~~~--~~~~~~~~-~li~~~~~~g~~~~A~~~f~~~~~~-------~~~~~~~li~~~~~~g~~~~A~~ 213 (600)
.+.+.+.+++..+. -|+...|. --.+.+...|++++|.+.|++.... ....+--+...+.-..++++|.+
T Consensus 247 ~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~ 326 (468)
T PF10300_consen 247 VPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAE 326 (468)
T ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHH
Confidence 34455555555555 23322222 2223445555666666666543321 11222233444555555666666
Q ss_pred HHHHHHHc
Q 007517 214 LFTLMQKE 221 (600)
Q Consensus 214 ~~~~m~~~ 221 (600)
.|..+.+.
T Consensus 327 ~f~~L~~~ 334 (468)
T PF10300_consen 327 YFLRLLKE 334 (468)
T ss_pred HHHHHHhc
Confidence 66555553
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=94.68 E-value=0.28 Score=41.90 Aligned_cols=69 Identities=16% Similarity=0.266 Sum_probs=30.9
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHh----cCCCCCChHH
Q 007517 297 NSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKS----KYLVEPKTEH 366 (600)
Q Consensus 297 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~----~~~~~p~~~~ 366 (600)
..++..+...|++++|+.+.+.+.... +-|...+..++.++...|+..+|.++|+.+.+ ..|++|+..+
T Consensus 66 ~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 66 ERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 334444555555555555555555431 22344555555555555555555555554422 2355555433
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=94.62 E-value=1.5 Score=44.42 Aligned_cols=152 Identities=15% Similarity=0.058 Sum_probs=86.2
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHH
Q 007517 305 QYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAM 384 (600)
Q Consensus 305 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 384 (600)
+..+++.-+++-++..+ +.||-.+...++ +--....+.++++++++..+.. ...+..-- .....|.. .
T Consensus 180 RERnp~aRIkaA~eALe--i~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkAg-----E~~lg~s~-~~~~~g~~---~ 247 (539)
T PF04184_consen 180 RERNPQARIKAAKEALE--INPDCADAYILL-AEEEASTIVEAEELLRQAVKAG-----EASLGKSQ-FLQHHGHF---W 247 (539)
T ss_pred hcCCHHHHHHHHHHHHH--hhhhhhHHHhhc-ccccccCHHHHHHHHHHHHHHH-----HHhhchhh-hhhcccch---h
Confidence 34455566666666665 467665543333 3334456788888887765531 00100000 00001111 1
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC--CCchHHHHHHHHHhcCCchHHHHHHHHHHhCCCc
Q 007517 385 KLIEAMPFEPDAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPK--NAGPYILLSNIYASQGRFHDVAELRKNMRKRNVI 462 (600)
Q Consensus 385 ~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 462 (600)
+.+..-..+|-..+=..|..++.+.|+.++|.+.++.+++..|. +......|+.++...+.+.++..++.+-.+...+
T Consensus 248 e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lp 327 (539)
T PF04184_consen 248 EAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLP 327 (539)
T ss_pred hhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCC
Confidence 11111111233444455777778889999999988888877665 3446777888888889999998888887655555
Q ss_pred cCCcee
Q 007517 463 KPPGCS 468 (600)
Q Consensus 463 ~~~~~s 468 (600)
+....+
T Consensus 328 kSAti~ 333 (539)
T PF04184_consen 328 KSATIC 333 (539)
T ss_pred chHHHH
Confidence 444433
|
The molecular function of this protein is uncertain. |
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=94.49 E-value=2.1 Score=36.15 Aligned_cols=67 Identities=16% Similarity=0.244 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhc-CCHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 007517 328 DVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRA-GQVEDAMKLIEAMPFEPDAIIWGSLLGAC 406 (600)
Q Consensus 328 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~p~~~~~~~ll~~~ 406 (600)
......++..|.+.+.++++..++..+.. |...++.+... ++++.|.+++.+- .+...|..++..+
T Consensus 69 ~yd~~~~~~~c~~~~l~~~~~~l~~k~~~----------~~~Al~~~l~~~~d~~~a~~~~~~~---~~~~lw~~~~~~~ 135 (140)
T smart00299 69 HYDIEKVGKLCEKAKLYEEAVELYKKDGN----------FKDAIVTLIEHLGNYEKAIEYFVKQ---NNPELWAEVLKAL 135 (140)
T ss_pred cCCHHHHHHHHHHcCcHHHHHHHHHhhcC----------HHHHHHHHHHcccCHHHHHHHHHhC---CCHHHHHHHHHHH
Confidence 33344455666666666666665554321 11222333333 5666666666652 2455666655554
Q ss_pred H
Q 007517 407 R 407 (600)
Q Consensus 407 ~ 407 (600)
.
T Consensus 136 l 136 (140)
T smart00299 136 L 136 (140)
T ss_pred H
Confidence 3
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=94.48 E-value=1.9 Score=44.87 Aligned_cols=157 Identities=18% Similarity=0.141 Sum_probs=98.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCC-CCCCH-----HHHHHHHHHHh----ccCCHHHHHHHHHHhHhcCCCCCChHHHH
Q 007517 299 IISGYAQYGLGEKSLKVFHEMFSSG-VMPDD-----VTLVGVLSACS----YTGKVKEGREIFESMKSKYLVEPKTEHYA 368 (600)
Q Consensus 299 li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~-----~t~~~ll~a~~----~~g~~~~a~~~~~~~~~~~~~~p~~~~~~ 368 (600)
+++...-.|+-+.+++++.+..+.+ +.-.. ..|..++..+. .....+.+.++++.+.+++ |+...|.
T Consensus 194 ll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~y---P~s~lfl 270 (468)
T PF10300_consen 194 LLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRY---PNSALFL 270 (468)
T ss_pred HHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhC---CCcHHHH
Confidence 3444444566666666666654422 21111 12222332222 2456788889998888764 5554443
Q ss_pred -HHHHHHhhcCCHHHHHHHHHhCC-CC-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHH-HHHHH
Q 007517 369 -CMVDLLGRAGQVEDAMKLIEAMP-FE-----PDAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYIL-LSNIY 440 (600)
Q Consensus 369 -~li~~~~~~g~~~~A~~~~~~m~-~~-----p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~-l~~~~ 440 (600)
--...+...|++++|.+.|++.- .+ -....+--+...+...+++++|...+.++.+.+.-+...|.. .+-+|
T Consensus 271 ~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~ 350 (468)
T PF10300_consen 271 FFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAACL 350 (468)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 33466778899999999998651 11 123444555666778899999999999999876655455544 55556
Q ss_pred HhcCCc-------hHHHHHHHHHHh
Q 007517 441 ASQGRF-------HDVAELRKNMRK 458 (600)
Q Consensus 441 ~~~g~~-------~~a~~~~~~m~~ 458 (600)
...|+. ++|.+++++...
T Consensus 351 ~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 351 LMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HhhccchhhhhhHHHHHHHHHHHHH
Confidence 778888 788888877654
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=94.41 E-value=0.076 Score=32.07 Aligned_cols=32 Identities=19% Similarity=0.086 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC
Q 007517 397 IIWGSLLGACRTHMKLDLAEVAAKKLLQLEPK 428 (600)
Q Consensus 397 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 428 (600)
.+|..+...+...|++++|+..++++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 46778888888888899999999888888886
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=94.41 E-value=0.5 Score=48.44 Aligned_cols=133 Identities=17% Similarity=0.173 Sum_probs=84.0
Q ss_pred HHHhcCChHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCH
Q 007517 302 GYAQYGLGEKSLKVFHEMF-SSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQV 380 (600)
Q Consensus 302 ~~~~~g~~~~A~~~~~~m~-~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 380 (600)
.....|+++++.++.+.-. -..+ | ..-...++.-+.+.|..+.|.++...-. .-.++..++|++
T Consensus 270 ~av~~~d~~~v~~~i~~~~ll~~i-~-~~~~~~i~~fL~~~G~~e~AL~~~~D~~-------------~rFeLAl~lg~L 334 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAASNLLPNI-P-KDQGQSIARFLEKKGYPELALQFVTDPD-------------HRFELALQLGNL 334 (443)
T ss_dssp HHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-HH-------------HHHHHHHHCT-H
T ss_pred HHHHcCChhhhhhhhhhhhhcccC-C-hhHHHHHHHHHHHCCCHHHHHhhcCChH-------------HHhHHHHhcCCH
Confidence 3445677777766664111 1111 2 3335667777778888888877643222 234566788888
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 007517 381 EDAMKLIEAMPFEPDAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMRKRN 460 (600)
Q Consensus 381 ~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 460 (600)
+.|.++.++. ++...|..|......+|+++.|+..+++. .-+..|+-.|...|+.+.-.++-+....+|
T Consensus 335 ~~A~~~a~~~---~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~--------~d~~~L~lLy~~~g~~~~L~kl~~~a~~~~ 403 (443)
T PF04053_consen 335 DIALEIAKEL---DDPEKWKQLGDEALRQGNIELAEECYQKA--------KDFSGLLLLYSSTGDREKLSKLAKIAEERG 403 (443)
T ss_dssp HHHHHHCCCC---STHHHHHHHHHHHHHTTBHHHHHHHHHHC--------T-HHHHHHHHHHCT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhc---CcHHHHHHHHHHHHHcCCHHHHHHHHHhh--------cCccccHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 8888887765 37778999999988999999998888876 457778888888888877777766666554
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=94.24 E-value=5.4 Score=38.29 Aligned_cols=236 Identities=12% Similarity=0.031 Sum_probs=145.9
Q ss_pred HHhhCCCCCcchHHHHHHHHHcCCCHHHHHHHHccCCCCCcchHHHHHHHHHhcCCh----HHHHHHHhhC--CCCCccc
Q 007517 28 LFWQMPEKNVVSWTVMLGGFIRDSRIDDARRLFDMMPEKDVVAQTNMVLGYCQDGRV----DEGREIFDEM--PKKNVIS 101 (600)
Q Consensus 28 ~~~~m~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~----~~A~~~~~~m--~~~~~~~ 101 (600)
++..+..+|..+....+.++...|..+-...+..-...+|...-..-+.++++.|+. +++...+..+ .+++...
T Consensus 28 L~~~L~d~d~~vR~~A~~aL~~~~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~D~d~~V 107 (280)
T PRK09687 28 LFRLLDDHNSLKRISSIRVLQLRGGQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALEDKSACV 107 (280)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcCcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhcCCCHHH
Confidence 344445677777777788888887654444444444466777777777888888763 4577777665 3466555
Q ss_pred HHHHHHHHHhCCC-----hHHHHHHHhhcCC-CCcchHHHHHHHHhcCCChHHHHHHHhhCCCCCccchhHHHHHHHhcC
Q 007517 102 WTTMISGYVNNNR-----IDVARKLFEVMPE-KNEVSWTAMLMGYTQCGRIQDAWELFKAMPMKSVVASNSMILGLGQNG 175 (600)
Q Consensus 102 ~~~li~~~~~~g~-----~~~A~~~~~~m~~-p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g 175 (600)
-...+.++...+. ...+...+..... ++..+-...+.++++.++.+....+...+..++..+....+.++++.+
T Consensus 108 R~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~ 187 (280)
T PRK09687 108 RASAINATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVINDEAAIPLLINLLKDPNGDVRNWAAFALNSNK 187 (280)
T ss_pred HHHHHHHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCCHHHHHHHHHHhcCCCHHHHHHHHHHHhcCC
Confidence 5556666655542 1234555544443 666676777788888777544444444444677777777777777653
Q ss_pred C-HHHHHH-HHHhcccCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCchhHhhHHHHHhhhcchHHHHHHHHHH
Q 007517 176 E-VQKARV-VFDQMREKDDATWSGMIKVYERKGYELEVIDLFTLMQKEGVRVNFPSLISVLSVCASLASLDHGRQVHAQL 253 (600)
Q Consensus 176 ~-~~~A~~-~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~ 253 (600)
. ...+.. +...+.++|...-...+.++.+.|+ ..|+..+-+..+.+. ....++.++...|+. .+...+..+
T Consensus 188 ~~~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~-~~av~~Li~~L~~~~-----~~~~a~~ALg~ig~~-~a~p~L~~l 260 (280)
T PRK09687 188 YDNPDIREAFVAMLQDKNEEIRIEAIIGLALRKD-KRVLSVLIKELKKGT-----VGDLIIEAAGELGDK-TLLPVLDTL 260 (280)
T ss_pred CCCHHHHHHHHHHhcCCChHHHHHHHHHHHccCC-hhHHHHHHHHHcCCc-----hHHHHHHHHHhcCCH-hHHHHHHHH
Confidence 1 334444 4444456677777788888888887 456666666655432 234677777888875 566777666
Q ss_pred HHcCCCCchhhHHHHHHHH
Q 007517 254 VRCQFDVDVYVASVLITMY 272 (600)
Q Consensus 254 ~~~~~~~~~~~~~~li~~y 272 (600)
.+.. +|..+-...+.++
T Consensus 261 ~~~~--~d~~v~~~a~~a~ 277 (280)
T PRK09687 261 LYKF--DDNEIITKAIDKL 277 (280)
T ss_pred HhhC--CChhHHHHHHHHH
Confidence 6543 3666655555544
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=94.23 E-value=0.12 Score=31.03 Aligned_cols=33 Identities=27% Similarity=0.203 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC
Q 007517 397 IIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKN 429 (600)
Q Consensus 397 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 429 (600)
..|..+...+...|++++|.+.++++++++|++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 356777788888888888888888888888864
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=93.85 E-value=2 Score=35.91 Aligned_cols=89 Identities=13% Similarity=0.198 Sum_probs=45.3
Q ss_pred ccCCHHHHHHHHHHhHhcCCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhC----CCCCCHHHHHHHHHHHHH------
Q 007517 340 YTGKVKEGREIFESMKSKYLVEP-KTEHYACMVDLLGRAGQVEDAMKLIEAM----PFEPDAIIWGSLLGACRT------ 408 (600)
Q Consensus 340 ~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~~~~~~~ll~~~~~------ 408 (600)
+.|++++|.+.|+.+..++...| .....-.|+.+|.+.|++++|...+++. |-.|++ -|...+.++..
T Consensus 22 ~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~v-dYa~Y~~gL~~~~~~~~ 100 (142)
T PF13512_consen 22 QKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNV-DYAYYMRGLSYYEQDEG 100 (142)
T ss_pred HhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCc-cHHHHHHHHHHHHHhhh
Confidence 44566666666666655543222 1334445556666666666666655544 323321 11112222111
Q ss_pred -----------cCCHHHHHHHHHHHhccCCCC
Q 007517 409 -----------HMKLDLAEVAAKKLLQLEPKN 429 (600)
Q Consensus 409 -----------~g~~~~a~~~~~~~~~~~p~~ 429 (600)
.+....|...|+++++.-|++
T Consensus 101 ~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S 132 (142)
T PF13512_consen 101 SLQSFFRSDRDPTPARQAFRDFEQLVRRYPNS 132 (142)
T ss_pred HHhhhcccccCcHHHHHHHHHHHHHHHHCcCC
Confidence 122556777777777777876
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.83 E-value=0.59 Score=44.44 Aligned_cols=159 Identities=11% Similarity=0.038 Sum_probs=116.0
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHH----HHHHhhcCCH
Q 007517 305 QYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACM----VDLLGRAGQV 380 (600)
Q Consensus 305 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l----i~~~~~~g~~ 380 (600)
-+|+..+|-..++++.+. .+.|-..+.-.=.+|...|+.+.-...++++..+ ..|+...|..+ ...+..+|-+
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~--wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK--WNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc--cCCCCcHHHHHHHHHHhhHHHhccc
Confidence 368888888889998875 5666777777788999999999999888888764 35666555443 4455689999
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC----CCchHHHHHHHHHhcCCchHHHHHHH
Q 007517 381 EDAMKLIEAM-PFEP-DAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPK----NAGPYILLSNIYASQGRFHDVAELRK 454 (600)
Q Consensus 381 ~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~a~~~~~ 454 (600)
++|++.-++. .+.| |...-.++...+...|+..++.++.++-...=.. -...|-..+-.+...+.++.|.++|+
T Consensus 192 ~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 192 DDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 9999999887 5444 5556677777788899999999887766543111 12345667777888899999999998
Q ss_pred HHHhCCCccCCc
Q 007517 455 NMRKRNVIKPPG 466 (600)
Q Consensus 455 ~m~~~g~~~~~~ 466 (600)
.=.-+...++.+
T Consensus 272 ~ei~k~l~k~Da 283 (491)
T KOG2610|consen 272 REIWKRLEKDDA 283 (491)
T ss_pred HHHHHHhhccch
Confidence 755444444444
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=93.65 E-value=1.7 Score=41.87 Aligned_cols=119 Identities=14% Similarity=0.090 Sum_probs=53.2
Q ss_pred HHHhccCCHHHHHHHHHHhHhcCCC--CC--ChHHHHHHHHHHhhcCCHHHHHHHHHhC-------CCCCCH-----HHH
Q 007517 336 SACSYTGKVKEGREIFESMKSKYLV--EP--KTEHYACMVDLLGRAGQVEDAMKLIEAM-------PFEPDA-----IIW 399 (600)
Q Consensus 336 ~a~~~~g~~~~a~~~~~~~~~~~~~--~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~~-----~~~ 399 (600)
.|....+.++++.+.|+...+--.- .| ...+|..|...|.+..++++|.-+..+. ++..=. .+.
T Consensus 130 ~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~l 209 (518)
T KOG1941|consen 130 NAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSL 209 (518)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHH
Confidence 3444444555555555554331100 11 1344555666666666665554433322 211101 112
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhcc--CCCC----CchHHHHHHHHHhcCCchHHHHHHH
Q 007517 400 GSLLGACRTHMKLDLAEVAAKKLLQL--EPKN----AGPYILLSNIYASQGRFHDVAELRK 454 (600)
Q Consensus 400 ~~ll~~~~~~g~~~~a~~~~~~~~~~--~p~~----~~~~~~l~~~~~~~g~~~~a~~~~~ 454 (600)
..|.-+++..|....|.+.-+++.++ ...| ......++++|-..|+.+.|..-++
T Consensus 210 yhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe 270 (518)
T KOG1941|consen 210 YHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYE 270 (518)
T ss_pred HHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHH
Confidence 22334555566666666655555542 1111 2223345666666666655554443
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=93.48 E-value=13 Score=41.93 Aligned_cols=95 Identities=14% Similarity=0.100 Sum_probs=50.7
Q ss_pred HHHHhcCCHHHHHHHHHhcccCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCchh--HhhHHHHHhhhcchHHH
Q 007517 169 LGLGQNGEVQKARVVFDQMREKDDATWSGMIKVYERKGYELEVIDLFTLMQKEGVRVNFPS--LISVLSVCASLASLDHG 246 (600)
Q Consensus 169 ~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t--~~~ll~~~~~~~~~~~a 246 (600)
-+|.++|+.++|. .+|...|++.+|+.+-.+|... -|... --.+.+-+...++.-+|
T Consensus 960 l~Ye~~GklekAl------------------~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~~kh~eA 1018 (1265)
T KOG1920|consen 960 LMYERCGKLEKAL------------------KAYKECGDWREALSLAAQLSEG---KDELVILAEELVSRLVEQRKHYEA 1018 (1265)
T ss_pred HHHHHhccHHHHH------------------HHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHcccchhH
Confidence 3555666666664 4455567777777777665321 11111 12344445555555555
Q ss_pred HHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHhhhhhcCCCC
Q 007517 247 RQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFASKD 292 (600)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~ 292 (600)
-++....... ..-.+..|++...+++|.++-......|
T Consensus 1019 a~il~e~~sd--------~~~av~ll~ka~~~~eAlrva~~~~~~d 1056 (1265)
T KOG1920|consen 1019 AKILLEYLSD--------PEEAVALLCKAKEWEEALRVASKAKRDD 1056 (1265)
T ss_pred HHHHHHHhcC--------HHHHHHHHhhHhHHHHHHHHHHhcccch
Confidence 5554443321 1234556667777777777665555433
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=93.48 E-value=6.8 Score=39.89 Aligned_cols=17 Identities=18% Similarity=0.237 Sum_probs=11.3
Q ss_pred HHHHHHHHHhccCCCCC
Q 007517 414 LAEVAAKKLLQLEPKNA 430 (600)
Q Consensus 414 ~a~~~~~~~~~~~p~~~ 430 (600)
.|.+...++.+.+|.-|
T Consensus 364 ~aveAi~RAvefNPHVp 380 (539)
T PF04184_consen 364 NAVEAIHRAVEFNPHVP 380 (539)
T ss_pred HHHHHHHHHHHhCCCCc
Confidence 35667777777777543
|
The molecular function of this protein is uncertain. |
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.35 E-value=6.3 Score=36.09 Aligned_cols=143 Identities=13% Similarity=0.131 Sum_probs=80.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHH--CCCCCCHH--HHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHH
Q 007517 295 MWNSIISGYAQYGLGEKSLKVFHEMFS--SGVMPDDV--TLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACM 370 (600)
Q Consensus 295 ~~~~li~~~~~~g~~~~A~~~~~~m~~--~g~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l 370 (600)
.|+--...|.++|.++-|-..+++.-+ .++.|+.. .|..-+......++...| ...|...
T Consensus 93 l~eKAs~lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma----------------~el~gk~ 156 (308)
T KOG1585|consen 93 LYEKASELYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMA----------------FELYGKC 156 (308)
T ss_pred HHHHHHHHHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHH----------------HHHHHHh
Confidence 445556677777777766666655432 12444432 122222222222222222 3345556
Q ss_pred HHHHhhcCCHHHHHHHHHhCC-------CCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHhc----cCCCCCchHHHHHH
Q 007517 371 VDLLGRAGQVEDAMKLIEAMP-------FEPDA-IIWGSLLGACRTHMKLDLAEVAAKKLLQ----LEPKNAGPYILLSN 438 (600)
Q Consensus 371 i~~~~~~g~~~~A~~~~~~m~-------~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~----~~p~~~~~~~~l~~ 438 (600)
...|.|..++++|-..|.+-+ --|+. ..+-+.|-.+.-..|+..|++.++.--+ ..|++..+...|+.
T Consensus 157 sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ 236 (308)
T KOG1585|consen 157 SRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLT 236 (308)
T ss_pred hhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHH
Confidence 667788888888777666541 11222 2244445555666788899998888665 35666677777877
Q ss_pred HHHhcCCchHHHHHHH
Q 007517 439 IYASQGRFHDVAELRK 454 (600)
Q Consensus 439 ~~~~~g~~~~a~~~~~ 454 (600)
+| ..|+.+++..+..
T Consensus 237 ay-d~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 237 AY-DEGDIEEIKKVLS 251 (308)
T ss_pred Hh-ccCCHHHHHHHHc
Confidence 77 5677777765543
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.32 E-value=1.6 Score=41.18 Aligned_cols=29 Identities=3% Similarity=0.003 Sum_probs=14.5
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHH
Q 007517 192 DATWSGMIKVYERKGYELEVIDLFTLMQK 220 (600)
Q Consensus 192 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 220 (600)
...--.+...+...|+.++|++.+-.+.+
T Consensus 236 ~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~ 264 (304)
T COG3118 236 VEAALALADQLHLVGRNEAALEHLLALLR 264 (304)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33334445555555555555554444443
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=93.30 E-value=5 Score=39.80 Aligned_cols=32 Identities=6% Similarity=0.023 Sum_probs=16.9
Q ss_pred cCChHHHHHHHHHHHHcCCccCchhHhhHHHH
Q 007517 205 KGYELEVIDLFTLMQKEGVRVNFPSLISVLSV 236 (600)
Q Consensus 205 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 236 (600)
.|+.++|++++..+....-.++..||..+...
T Consensus 195 ~gdre~Al~il~~~l~~~~~~~~d~~gL~GRI 226 (374)
T PF13281_consen 195 PGDREKALQILLPVLESDENPDPDTLGLLGRI 226 (374)
T ss_pred CCCHHHHHHHHHHHHhccCCCChHHHHHHHHH
Confidence 55666666666664444444555555544443
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=93.24 E-value=4.5 Score=34.07 Aligned_cols=126 Identities=10% Similarity=0.020 Sum_probs=76.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHh
Q 007517 296 WNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLG 375 (600)
Q Consensus 296 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~ 375 (600)
-..++..+...+.....+.+++.+...+ ..+....+.++..+++.. .+...+.+.. . ++.......+..+.
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~--~-----~~~yd~~~~~~~c~ 80 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN--K-----SNHYDIEKVGKLCE 80 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh--c-----cccCCHHHHHHHHH
Confidence 3456777777778888888888888776 355566777777777543 3444444442 1 12222334667777
Q ss_pred hcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHhccCCCCCchHHHHHHHHH
Q 007517 376 RAGQVEDAMKLIEAMPFEPDAIIWGSLLGACRTH-MKLDLAEVAAKKLLQLEPKNAGPYILLSNIYA 441 (600)
Q Consensus 376 ~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~-g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 441 (600)
+.+.++++.-++.+++.. ...+..+..+ ++++.|.+++.+ +.++..|..++..+.
T Consensus 81 ~~~l~~~~~~l~~k~~~~------~~Al~~~l~~~~d~~~a~~~~~~-----~~~~~lw~~~~~~~l 136 (140)
T smart00299 81 KAKLYEEAVELYKKDGNF------KDAIVTLIEHLGNYEKAIEYFVK-----QNNPELWAEVLKALL 136 (140)
T ss_pred HcCcHHHHHHHHHhhcCH------HHHHHHHHHcccCHHHHHHHHHh-----CCCHHHHHHHHHHHH
Confidence 778888888888877522 1222233334 778888887775 234456666665554
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.20 E-value=2.7 Score=40.19 Aligned_cols=179 Identities=9% Similarity=0.032 Sum_probs=118.1
Q ss_pred HHcCCHHHHHhhhhhcCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH----HHHHhccCCHH
Q 007517 273 IKCGELVKGKLIFDNFAS---KDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGV----LSACSYTGKVK 345 (600)
Q Consensus 273 ~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l----l~a~~~~g~~~ 345 (600)
...|+.-+|...++++.+ .|..+|+--=.+|...|+.+.-...+++.... ..||...|..+ .-++...|-++
T Consensus 114 ~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred hccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccch
Confidence 346777788777877765 48899999999999999999999999998764 34555333322 22345678999
Q ss_pred HHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCC-------HHHHHHHHHHHHHcCCHHHHHHH
Q 007517 346 EGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAMPFEPD-------AIIWGSLLGACRTHMKLDLAEVA 418 (600)
Q Consensus 346 ~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~-------~~~~~~ll~~~~~~g~~~~a~~~ 418 (600)
+|++.-++..+-. +.|.-.-.++...+...|++.++.++..+-.-.-+ .--|.. .-.+...+.++.|+.+
T Consensus 193 dAEk~A~ralqiN--~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~-Al~~iE~aeye~aleI 269 (491)
T KOG2610|consen 193 DAEKQADRALQIN--RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHT-ALFHIEGAEYEKALEI 269 (491)
T ss_pred hHHHHHHhhccCC--CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHH-HHhhhcccchhHHHHH
Confidence 9999888876532 34566667788889999999999999987621100 111222 2234556899999999
Q ss_pred HHHHh--ccCCCCCch---HHHHHHHHHhcCCchHHHHHHHH
Q 007517 419 AKKLL--QLEPKNAGP---YILLSNIYASQGRFHDVAELRKN 455 (600)
Q Consensus 419 ~~~~~--~~~p~~~~~---~~~l~~~~~~~g~~~~a~~~~~~ 455 (600)
|++-+ +++.++... |.-+-..-.....|.+-.++-+.
T Consensus 270 yD~ei~k~l~k~Da~a~~~~ld~dgv~~~~d~~~kld~la~~ 311 (491)
T KOG2610|consen 270 YDREIWKRLEKDDAVARDVYLDLDGVDLRSDLWRKLDKLADS 311 (491)
T ss_pred HHHHHHHHhhccchhhhhhhhhhhhHHhHHHHHHHHHhhhhh
Confidence 98633 466666533 23334444444445444444333
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=93.11 E-value=2.6 Score=43.29 Aligned_cols=105 Identities=15% Similarity=0.158 Sum_probs=67.0
Q ss_pred HHHHHHcCCHHHHHhhhhhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHH
Q 007517 269 ITMYIKCGELVKGKLIFDNFASKDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGR 348 (600)
Q Consensus 269 i~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 348 (600)
.+...++|+++.|.++-+... +...|..|.....+.|+++-|.+.|.+... |..|+-.|.-.|+.+.-.
T Consensus 325 FeLAl~lg~L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~ 393 (443)
T PF04053_consen 325 FELALQLGNLDIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLS 393 (443)
T ss_dssp HHHHHHCT-HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHH
T ss_pred hHHHHhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHH
Confidence 345567888888888776665 566888888888888888888888877532 344555566667776666
Q ss_pred HHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCC
Q 007517 349 EIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAMP 391 (600)
Q Consensus 349 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 391 (600)
++.+..... | -++.....+.-.|+.++..+++.+.+
T Consensus 394 kl~~~a~~~-~------~~n~af~~~~~lgd~~~cv~lL~~~~ 429 (443)
T PF04053_consen 394 KLAKIAEER-G------DINIAFQAALLLGDVEECVDLLIETG 429 (443)
T ss_dssp HHHHHHHHT-T-------HHHHHHHHHHHT-HHHHHHHHHHTT
T ss_pred HHHHHHHHc-c------CHHHHHHHHHHcCCHHHHHHHHHHcC
Confidence 666555443 2 13444455555677777777776654
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=92.85 E-value=17 Score=39.59 Aligned_cols=116 Identities=12% Similarity=0.029 Sum_probs=60.5
Q ss_pred cCChHHHHHHHHHHHHCC-CCCCHH--HHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHH
Q 007517 306 YGLGEKSLKVFHEMFSSG-VMPDDV--TLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVED 382 (600)
Q Consensus 306 ~g~~~~A~~~~~~m~~~g-~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 382 (600)
..+.+.|..++.+..... ..++.. ....+.......+..+++...++..... ..+......-+..-.+.++++.
T Consensus 254 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~---~~~~~~~e~r~r~Al~~~dw~~ 330 (644)
T PRK11619 254 RQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMR---SQSTSLLERRVRMALGTGDRRG 330 (644)
T ss_pred HhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccc---cCCcHHHHHHHHHHHHccCHHH
Confidence 345577888887764432 333322 2222322222222255666666654332 1234444444555557788888
Q ss_pred HHHHHHhCCCC-CCHHHHH-HHHHHHHHcCCHHHHHHHHHHHhc
Q 007517 383 AMKLIEAMPFE-PDAIIWG-SLLGACRTHMKLDLAEVAAKKLLQ 424 (600)
Q Consensus 383 A~~~~~~m~~~-p~~~~~~-~ll~~~~~~g~~~~a~~~~~~~~~ 424 (600)
+...+..|+.. .+..-|. =+..+....|+.+.|...|+++..
T Consensus 331 ~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 331 LNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred HHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 88888877311 1111122 234555567888888888877643
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=92.80 E-value=9.5 Score=36.62 Aligned_cols=119 Identities=12% Similarity=-0.009 Sum_probs=51.0
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC-CHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHh
Q 007517 297 NSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTG-KVKEGREIFESMKSKYLVEPKTEHYACMVDLLG 375 (600)
Q Consensus 297 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g-~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~ 375 (600)
...+.++.+.|+ .+|+..+-.+.+ .+|...-...+.++.+.+ .-+.+...+..+.. .++..+-..-+.+++
T Consensus 146 ~~a~~aLg~~~~-~~ai~~L~~~L~---d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~----D~~~~VR~~A~~aLg 217 (280)
T PRK09687 146 FAVAFALSVIND-EAAIPLLINLLK---DPNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ----DKNEEIRIEAIIGLA 217 (280)
T ss_pred HHHHHHHhccCC-HHHHHHHHHHhc---CCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc----CCChHHHHHHHHHHH
Confidence 334444444443 344444444443 233333333333444332 12234444433332 234455555555555
Q ss_pred hcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC
Q 007517 376 RAGQVEDAMKLIEAMPFEPDAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEP 427 (600)
Q Consensus 376 ~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 427 (600)
+.|+..-.-.+++.+. .++ .....+.++...|+. +|...+.++.+.+|
T Consensus 218 ~~~~~~av~~Li~~L~-~~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~~~ 265 (280)
T PRK09687 218 LRKDKRVLSVLIKELK-KGT--VGDLIIEAAGELGDK-TLLPVLDTLLYKFD 265 (280)
T ss_pred ccCChhHHHHHHHHHc-CCc--hHHHHHHHHHhcCCH-hHHHHHHHHHhhCC
Confidence 5555332222333332 122 123444555555553 45555555555555
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.78 E-value=4.3 Score=37.11 Aligned_cols=100 Identities=11% Similarity=0.070 Sum_probs=45.8
Q ss_pred HHHHHHHHHhCCChHHHHHHHhhcCC--CCcchHHHHHHHHhcCCChHHHHHHHhhCC--CCCccchhHHHHHHHhcCCH
Q 007517 102 WTTMISGYVNNNRIDVARKLFEVMPE--KNEVSWTAMLMGYTQCGRIQDAWELFKAMP--MKSVVASNSMILGLGQNGEV 177 (600)
Q Consensus 102 ~~~li~~~~~~g~~~~A~~~~~~m~~--p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~--~~~~~~~~~li~~~~~~g~~ 177 (600)
|.--..+|-...++++|...+.+..+ .+..++-....+ ++.|.-+.+++. +.-+..++.-..+|..+|..
T Consensus 34 yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKa------yEqaamLake~~klsEvvdl~eKAs~lY~E~Gsp 107 (308)
T KOG1585|consen 34 YEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKA------YEQAAMLAKELSKLSEVVDLYEKASELYVECGSP 107 (308)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHH------HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCc
Confidence 33344456666666666666555543 222222111111 222222222222 11122334455667777776
Q ss_pred HHHHHHHHhcccCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Q 007517 178 QKARVVFDQMREKDDATWSGMIKVYERKGYELEVIDLFTLMQ 219 (600)
Q Consensus 178 ~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 219 (600)
+.|-..+++..+ ...+.++++|+.+|++..
T Consensus 108 dtAAmaleKAak------------~lenv~Pd~AlqlYqral 137 (308)
T KOG1585|consen 108 DTAAMALEKAAK------------ALENVKPDDALQLYQRAL 137 (308)
T ss_pred chHHHHHHHHHH------------HhhcCCHHHHHHHHHHHH
Confidence 666555554321 234456666666666543
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.68 E-value=18 Score=39.39 Aligned_cols=75 Identities=17% Similarity=0.242 Sum_probs=46.6
Q ss_pred HHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc-cCCCCCchHHHHHHHHHhcCC
Q 007517 370 MVDLLGRAGQVEDAMKLIEAMPFEPDAIIWGSLLGACRTHMKLDLAEVAAKKLLQ-LEPKNAGPYILLSNIYASQGR 445 (600)
Q Consensus 370 li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-~~p~~~~~~~~l~~~~~~~g~ 445 (600)
++..+.+..+++.+..+.+..+ +-++..|-.+++.+...+..+.-.+...+.++ +...+..+-..+++++++.+.
T Consensus 711 l~~~~~q~~d~E~~it~~~~~g-~~~p~l~~~~L~yF~~~~~i~~~~~~v~~vl~~I~~~~~ippl~VL~~Lakn~~ 786 (933)
T KOG2114|consen 711 LMLYFQQISDPETVITLCERLG-KEDPSLWLHALKYFVSEESIEDCYEIVYKVLEAIEMQERIPPLHVLQILAKNGT 786 (933)
T ss_pred HHHHHHHhhChHHHHHHHHHhC-ccChHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHhcccCCHHHHHHHHhcCCc
Confidence 3445566667777777777775 33777888888888888777666665555554 222222333455566666554
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.65 E-value=0.88 Score=36.99 Aligned_cols=90 Identities=17% Similarity=0.090 Sum_probs=52.6
Q ss_pred HHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC----CCCCC--HHHHHHHHHHHHHcC
Q 007517 337 ACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM----PFEPD--AIIWGSLLGACRTHM 410 (600)
Q Consensus 337 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~--~~~~~~ll~~~~~~g 410 (600)
+.+..|+++.|.+.|.+...- .+.....||.-..+|.-.|+.++|++-+++. +-+.- -..|..-...|+..|
T Consensus 52 alaE~g~Ld~AlE~F~qal~l--~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCL--APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHhccchHHHHHHHHHHHHh--cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 345566777777777666542 2345666777777777777777777666654 21100 112333334466777
Q ss_pred CHHHHHHHHHHHhccCCC
Q 007517 411 KLDLAEVAAKKLLQLEPK 428 (600)
Q Consensus 411 ~~~~a~~~~~~~~~~~p~ 428 (600)
+.+.|..-|+.+-++...
T Consensus 130 ~dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLGSK 147 (175)
T ss_pred chHHHHHhHHHHHHhCCH
Confidence 777777777766665443
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=92.64 E-value=1.2 Score=41.45 Aligned_cols=88 Identities=19% Similarity=0.195 Sum_probs=38.8
Q ss_pred CCHHHHHHHHHHhHhcCCC-CCChHHHHHHHHHHhhcCCHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHHcCCHHHH
Q 007517 342 GKVKEGREIFESMKSKYLV-EPKTEHYACMVDLLGRAGQVEDAMKLIEAM----PFEPD-AIIWGSLLGACRTHMKLDLA 415 (600)
Q Consensus 342 g~~~~a~~~~~~~~~~~~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~-~~~~~~ll~~~~~~g~~~~a 415 (600)
|++..|.+.|....++|.- .-....+-.|...+...|++++|..+|..+ |-.|- +...--|.......|+.++|
T Consensus 155 gdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A 234 (262)
T COG1729 155 GDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEA 234 (262)
T ss_pred CCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHH
Confidence 4444555444444443310 001223333445555555555555544444 21121 23333444444555555555
Q ss_pred HHHHHHHhccCCCC
Q 007517 416 EVAAKKLLQLEPKN 429 (600)
Q Consensus 416 ~~~~~~~~~~~p~~ 429 (600)
...++++.+.-|+.
T Consensus 235 ~atl~qv~k~YP~t 248 (262)
T COG1729 235 CATLQQVIKRYPGT 248 (262)
T ss_pred HHHHHHHHHHCCCC
Confidence 55555555555544
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.55 E-value=8.5 Score=35.69 Aligned_cols=167 Identities=13% Similarity=0.135 Sum_probs=80.9
Q ss_pred HhcCCHHHHHHHHHhcccC------ChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCchhHhhHHHHHhhh-----
Q 007517 172 GQNGEVQKARVVFDQMREK------DDATWSGMIKVYERKGYELEVIDLFTLMQKEGVRVNFPSLISVLSVCASL----- 240 (600)
Q Consensus 172 ~~~g~~~~A~~~f~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~----- 240 (600)
.+.|++++|.+.|+.+..+ ...+--.++-++-+.+++++|+..+++..+.-..-...-|..-|.+.+..
T Consensus 45 L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~~ 124 (254)
T COG4105 45 LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQIDD 124 (254)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCCc
Confidence 4567777777777777643 22334455667777888888888887776643222223344334333311
Q ss_pred --cchHHHHH---HHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHhhhhhcCCCCHHH-HH-HHHHHHHhcCChHHHH
Q 007517 241 --ASLDHGRQ---VHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFASKDIVM-WN-SIISGYAQYGLGEKSL 313 (600)
Q Consensus 241 --~~~~~a~~---~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~-~~-~li~~~~~~g~~~~A~ 313 (600)
.+...+++ -++.+++. .|.+..+-.+ ......+ +|... ++ ++..-|.+.|.+..|.
T Consensus 125 ~~rDq~~~~~A~~~f~~~i~r-yPnS~Ya~dA--------------~~~i~~~--~d~LA~~Em~IaryY~kr~~~~AA~ 187 (254)
T COG4105 125 VTRDQSAARAAFAAFKELVQR-YPNSRYAPDA--------------KARIVKL--NDALAGHEMAIARYYLKRGAYVAAI 187 (254)
T ss_pred cccCHHHHHHHHHHHHHHHHH-CCCCcchhhH--------------HHHHHHH--HHHHHHHHHHHHHHHHHhcChHHHH
Confidence 12222222 22222222 1111111110 0000000 01111 11 2334567777777777
Q ss_pred HHHHHHHHCCCCCCH---HHHHHHHHHHhccCCHHHHHHHHHHhHh
Q 007517 314 KVFHEMFSSGVMPDD---VTLVGVLSACSYTGKVKEGREIFESMKS 356 (600)
Q Consensus 314 ~~~~~m~~~g~~p~~---~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 356 (600)
.-+++|++. .+-.. ..+-.+..+|...|..++|...-.-+..
T Consensus 188 nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 188 NRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 777777765 22222 2344455667777777777666555544
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.46 E-value=7.2 Score=35.05 Aligned_cols=160 Identities=16% Similarity=0.149 Sum_probs=88.8
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHH
Q 007517 293 IVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPD-DVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMV 371 (600)
Q Consensus 293 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li 371 (600)
...||-+.--+...|+++.|.+.|+...+. .|. ..++..-.-++--.|++..|.+-|...-..-.-.|-...|--++
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~EL--Dp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~ 176 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLEL--DPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLN 176 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhcc--CCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHH
Confidence 456777777777788888888888877764 332 12222212234445777777665554433212222223332222
Q ss_pred HHHhhcCCHHHHHHHH-HhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC-------CchHHHHHHHHHhc
Q 007517 372 DLLGRAGQVEDAMKLI-EAMPFEPDAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKN-------AGPYILLSNIYASQ 443 (600)
Q Consensus 372 ~~~~~~g~~~~A~~~~-~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~-------~~~~~~l~~~~~~~ 443 (600)
.+.-++.+|..-+ ++.. .-|..-|..-+-.+.-..-.+ +.+++++.+...++ ..+|.-|+.-|...
T Consensus 177 ---E~k~dP~~A~tnL~qR~~-~~d~e~WG~~iV~~yLgkiS~--e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~ 250 (297)
T COG4785 177 ---EQKLDPKQAKTNLKQRAE-KSDKEQWGWNIVEFYLGKISE--ETLMERLKADATDNTSLAEHLTETYFYLGKYYLSL 250 (297)
T ss_pred ---HhhCCHHHHHHHHHHHHH-hccHhhhhHHHHHHHHhhccH--HHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhcc
Confidence 2334566665443 3332 345566666555543322111 22333333322222 35788899999999
Q ss_pred CCchHHHHHHHHHHhCC
Q 007517 444 GRFHDVAELRKNMRKRN 460 (600)
Q Consensus 444 g~~~~a~~~~~~m~~~g 460 (600)
|..++|..+|+.....+
T Consensus 251 G~~~~A~~LfKLaiann 267 (297)
T COG4785 251 GDLDEATALFKLAVANN 267 (297)
T ss_pred ccHHHHHHHHHHHHHHh
Confidence 99999999999876654
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.43 E-value=0.95 Score=42.04 Aligned_cols=97 Identities=12% Similarity=0.170 Sum_probs=72.1
Q ss_pred HHHHHhcc--cCChhhHHHHHHHHHHc-----CChHHHHHHHHHHHHcCCccCchhHhhHHHHHhhh-------------
Q 007517 181 RVVFDQMR--EKDDATWSGMIKVYERK-----GYELEVIDLFTLMQKEGVRVNFPSLISVLSVCASL------------- 240 (600)
Q Consensus 181 ~~~f~~~~--~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~------------- 240 (600)
++.|.... ++|-.+|-+++..+... +..+-....++.|.+-|+.-|..+|..+|+.+-+-
T Consensus 54 e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~ 133 (406)
T KOG3941|consen 54 EKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFL 133 (406)
T ss_pred hhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHh
Confidence 45566665 56777888887777543 55666667788889999999999999998876442
Q ss_pred ---cchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCC
Q 007517 241 ---ASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGE 277 (600)
Q Consensus 241 ---~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~ 277 (600)
..-+.+..++++|...|+-||..+-..|++++++.+-
T Consensus 134 HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 134 HYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred hCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 2234577888888888888888888888888877664
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=92.16 E-value=3.2 Score=35.64 Aligned_cols=84 Identities=8% Similarity=0.061 Sum_probs=34.1
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHH
Q 007517 304 AQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDA 383 (600)
Q Consensus 304 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 383 (600)
-+.|++++|..+|+-+...+ .-|..-+..|..+|-..+.+++|...|.....- . ..|+..+-.....|...|+.+.|
T Consensus 48 y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l-~-~~dp~p~f~agqC~l~l~~~~~A 124 (165)
T PRK15331 48 YNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTL-L-KNDYRPVFFTGQCQLLMRKAAKA 124 (165)
T ss_pred HHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-c-cCCCCccchHHHHHHHhCCHHHH
Confidence 34455555555555444321 111222233333334444555555554433221 1 12222233344444555555555
Q ss_pred HHHHHhC
Q 007517 384 MKLIEAM 390 (600)
Q Consensus 384 ~~~~~~m 390 (600)
+.-|+..
T Consensus 125 ~~~f~~a 131 (165)
T PRK15331 125 RQCFELV 131 (165)
T ss_pred HHHHHHH
Confidence 5544443
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.09 E-value=10 Score=35.23 Aligned_cols=57 Identities=12% Similarity=0.065 Sum_probs=45.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhccCCCCCc---hHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007517 402 LLGACRTHMKLDLAEVAAKKLLQLEPKNAG---PYILLSNIYASQGRFHDVAELRKNMRK 458 (600)
Q Consensus 402 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~a~~~~~~m~~ 458 (600)
+..-|.+.|.+..|..-++.+++.-|+.+. .+..+..+|...|..++|.+.-+-+..
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 345688999999999999999987665444 456688889999999999988776654
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=92.00 E-value=18 Score=37.83 Aligned_cols=365 Identities=12% Similarity=0.077 Sum_probs=196.3
Q ss_pred chHHHHHHHHHhCCChHHHHHHHhhCCCCCcc---hHHHHHHHHHcCCCHHHHHHHHccCC---CCCcchHHHHHHHHH-
Q 007517 7 VSWTAMVRGYVEEGMITEAGTLFWQMPEKNVV---SWTVMLGGFIRDSRIDDARRLFDMMP---EKDVVAQTNMVLGYC- 79 (600)
Q Consensus 7 ~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~---~~~~ll~~~~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~- 79 (600)
..|+++|.---+....+.+..++..++..-+. -|-....-=.+.|..+.+.++|++-. ...+..|...+....
T Consensus 46 ~~wt~li~~~~~~~~~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n 125 (577)
T KOG1258|consen 46 DAWTTLIQENDSIEDVDALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLAFLKN 125 (577)
T ss_pred cchHHHHhccCchhHHHHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc
Confidence 45777776655556666677777777743333 23444444457788999999998876 335555665554443
Q ss_pred hcCChHHHHHHHhhCCC------CCcccHHHHHHHHHhCCChHHHHHHHhhcCC-CCcchHHHHHHHH---hcC------
Q 007517 80 QDGRVDEGREIFDEMPK------KNVISWTTMISGYVNNNRIDVARKLFEVMPE-KNEVSWTAMLMGY---TQC------ 143 (600)
Q Consensus 80 ~~g~~~~A~~~~~~m~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-p~~~t~~~ll~~~---~~~------ 143 (600)
..|+.+..++.|+.... .+..-|...|.--..++++.....++++..+ |.. -|+....-+ .+.
T Consensus 126 ~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~-~~~~~f~~f~~~l~~~~~~~l 204 (577)
T KOG1258|consen 126 NNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLH-QLNRHFDRFKQLLNQNEEKIL 204 (577)
T ss_pred cCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhh-HhHHHHHHHHHHHhcCChhhh
Confidence 45777788888887654 3455688888877788888888888888877 321 111111111 111
Q ss_pred CChHHHHHHH-----------------------hhCCCCCcc---chhHH-------HHHHHhcCCHHHHHHHHHhccc-
Q 007517 144 GRIQDAWELF-----------------------KAMPMKSVV---ASNSM-------ILGLGQNGEVQKARVVFDQMRE- 189 (600)
Q Consensus 144 g~~~~a~~~~-----------------------~~~~~~~~~---~~~~l-------i~~~~~~g~~~~A~~~f~~~~~- 189 (600)
...++..++- .....+... ..+.+ -.+|-..-...+.+..|+.-..
T Consensus 205 ~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~Ikr 284 (577)
T KOG1258|consen 205 LSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKR 284 (577)
T ss_pred cCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhccc
Confidence 1111111111 111000000 00000 1122222233333334443321
Q ss_pred ------C----ChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCchhHhhHHHHHhhhcchHHHHHHHHHHHHcCCC
Q 007517 190 ------K----DDATWSGMIKVYERKGYELEVIDLFTLMQKEGVRVNFPSLISVLSVCASLASLDHGRQVHAQLVRCQFD 259 (600)
Q Consensus 190 ------~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 259 (600)
+ +..+|+.-+.--...|+.+.+.-+|++..----.-+ ..|...+.-....|+.+.+..++....+.-.+
T Consensus 285 pYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~-efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k 363 (577)
T KOG1258|consen 285 PYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYD-EFWIKYARWMESSGDVSLANNVLARACKIHVK 363 (577)
T ss_pred cccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhH-HHHHHHHHHHHHcCchhHHHHHHHhhhhhcCC
Confidence 1 456788888888899999999888887643110111 12222333333348888887777666664433
Q ss_pred --CchhhHHHHHHHHHHcCCHHHHHhhhhhcCC--CCHH-HHHHHHHHHHhcCChHHHH---HHHHHHHHCCCCCCHHHH
Q 007517 260 --VDVYVASVLITMYIKCGELVKGKLIFDNFAS--KDIV-MWNSIISGYAQYGLGEKSL---KVFHEMFSSGVMPDDVTL 331 (600)
Q Consensus 260 --~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~~-~~~~li~~~~~~g~~~~A~---~~~~~m~~~g~~p~~~t~ 331 (600)
|...+..+.+. -..|+.+.|..+++.+.+ |+.+ .-.-=+..-.+.|+.+.+. +++..... | +-+..++
T Consensus 364 ~~~~i~L~~a~f~--e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~-~-~~~~~i~ 439 (577)
T KOG1258|consen 364 KTPIIHLLEARFE--ESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDANYKNELYSSIYE-G-KENNGIL 439 (577)
T ss_pred CCcHHHHHHHHHH--HhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcc-c-ccCcchh
Confidence 33333333322 225789999988888765 3321 1111123344566666666 33332222 2 1111111
Q ss_pred HHHHH-----HHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCC
Q 007517 332 VGVLS-----ACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQ 379 (600)
Q Consensus 332 ~~ll~-----a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 379 (600)
..+.- -+.-.++.+.|..++..+... ++++...|..+++.....+.
T Consensus 440 ~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~--~~~~k~~~~~~~~~~~~~~~ 490 (577)
T KOG1258|consen 440 EKLYVKFARLRYKIREDADLARIILLEANDI--LPDCKVLYLELIRFELIQPS 490 (577)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc--CCccHHHHHHHHHHHHhCCc
Confidence 11111 123357888999999888763 56778888888887766553
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.70 E-value=1.1 Score=39.48 Aligned_cols=88 Identities=17% Similarity=0.189 Sum_probs=69.4
Q ss_pred HHHhhcCCHHHHHHHHHhC-CCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcC
Q 007517 372 DLLGRAGQVEDAMKLIEAM-PFEP------DAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQG 444 (600)
Q Consensus 372 ~~~~~~g~~~~A~~~~~~m-~~~p------~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 444 (600)
.-+.+.|++++|..-|... .+-| -.+.|..-..+..+.+..+.|+.-..+++++.|....+...-+.+|.+..
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~e 182 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKME 182 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhh
Confidence 3456778888888777655 1122 23445555667888899999999999999999988788888899999999
Q ss_pred CchHHHHHHHHHHhC
Q 007517 445 RFHDVAELRKNMRKR 459 (600)
Q Consensus 445 ~~~~a~~~~~~m~~~ 459 (600)
++++|.+=++++.+.
T Consensus 183 k~eealeDyKki~E~ 197 (271)
T KOG4234|consen 183 KYEEALEDYKKILES 197 (271)
T ss_pred hHHHHHHHHHHHHHh
Confidence 999999999998875
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=91.55 E-value=13 Score=35.32 Aligned_cols=141 Identities=11% Similarity=0.091 Sum_probs=63.5
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHH
Q 007517 302 GYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVE 381 (600)
Q Consensus 302 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 381 (600)
.....|++.+|..+|....... .-+...-..+..++...|+.+.|..++..+..+.. .........-+..+.+.....
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~-~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQ-DKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccch-hhHHHHHHHHHHHHHHHhcCC
Confidence 3445566666666666655532 11223334455556666666666666665543210 000111122234444444433
Q ss_pred HHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc--CCCCCchHHHHHHHHHhcC
Q 007517 382 DAMKLIEAMPFEP-DAIIWGSLLGACRTHMKLDLAEVAAKKLLQL--EPKNAGPYILLSNIYASQG 444 (600)
Q Consensus 382 ~A~~~~~~m~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~--~p~~~~~~~~l~~~~~~~g 444 (600)
+...+-.+..-.| |...-..|...+...|+.+.|...+-.+++. .-++...-..|+..+..-|
T Consensus 221 ~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 221 EIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred CHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 3333333332233 3444444555555556666655544444432 2223344444555554444
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=91.18 E-value=15 Score=35.35 Aligned_cols=19 Identities=16% Similarity=-0.155 Sum_probs=13.1
Q ss_pred HHHHcCCHHHHHHHHHHHh
Q 007517 405 ACRTHMKLDLAEVAAKKLL 423 (600)
Q Consensus 405 ~~~~~g~~~~a~~~~~~~~ 423 (600)
.+.+.++++.|...++-.+
T Consensus 255 ~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 255 KHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHhhcCHHHHHHHHHHHH
Confidence 3556778888888777543
|
It is also involved in sporulation []. |
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=91.06 E-value=0.37 Score=28.89 Aligned_cols=31 Identities=19% Similarity=0.087 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhccCCC
Q 007517 398 IWGSLLGACRTHMKLDLAEVAAKKLLQLEPK 428 (600)
Q Consensus 398 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 428 (600)
+|..+...+...|++++|...++++++++|+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 5666777778888888888888888887774
|
... |
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=90.75 E-value=19 Score=35.84 Aligned_cols=149 Identities=11% Similarity=-0.028 Sum_probs=76.2
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHhccCCHHHHHHHHHHhHhc-CCCCCChHH
Q 007517 291 KDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMP---DDVTLVGVLSACSYTGKVKEGREIFESMKSK-YLVEPKTEH 366 (600)
Q Consensus 291 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~-~~~~p~~~~ 366 (600)
....+|..++..+.+.|+++.|...+.++...+..+ +......-....-..|+-.+|...++..... ..-..+...
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~ 223 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSIS 223 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccccc
Confidence 355678888888888999999998888887643211 2222323344455667888888887776652 110001111
Q ss_pred HHHHHHHHhhcCCHHHHHHH-HHhCCCCCCHHHHHHHHHHHHH------cCCHHHHHHHHHHHhccCCCCCchHHHHHHH
Q 007517 367 YACMVDLLGRAGQVEDAMKL-IEAMPFEPDAIIWGSLLGACRT------HMKLDLAEVAAKKLLQLEPKNAGPYILLSNI 439 (600)
Q Consensus 367 ~~~li~~~~~~g~~~~A~~~-~~~m~~~p~~~~~~~ll~~~~~------~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 439 (600)
...+...+.. ..+..... ........-...+..+..-+.. .++.+.+...+..+.++.|.....+..++..
T Consensus 224 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~ 301 (352)
T PF02259_consen 224 NAELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALF 301 (352)
T ss_pred HHHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHH
Confidence 1111111000 00000000 0000000001122222222223 3778888899999999999876666666665
Q ss_pred HH
Q 007517 440 YA 441 (600)
Q Consensus 440 ~~ 441 (600)
+.
T Consensus 302 ~~ 303 (352)
T PF02259_consen 302 ND 303 (352)
T ss_pred HH
Confidence 53
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.67 E-value=12 Score=40.58 Aligned_cols=52 Identities=12% Similarity=0.086 Sum_probs=23.1
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHH
Q 007517 300 ISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFE 352 (600)
Q Consensus 300 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 352 (600)
|.-|....+..+-..+++.+.+.|+.-... -..||.+|.+.++.+.-.++.+
T Consensus 404 i~kfLdaq~IknLt~YLe~L~~~gla~~dh-ttlLLncYiKlkd~~kL~efI~ 455 (933)
T KOG2114|consen 404 IKKFLDAQRIKNLTSYLEALHKKGLANSDH-TTLLLNCYIKLKDVEKLTEFIS 455 (933)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHcccccchh-HHHHHHHHHHhcchHHHHHHHh
Confidence 333444444444444555555554322222 1234555555555555444443
|
|
| >PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=90.36 E-value=38 Score=38.78 Aligned_cols=252 Identities=10% Similarity=-0.016 Sum_probs=128.7
Q ss_pred HHHhhCCCCCcccHHHHHHHHHhCCChHHHHHHHhhcCC-CCcchHHHHHHHHhcCCCh-HHHHHHHhhCCCCCccchhH
Q 007517 89 EIFDEMPKKNVISWTTMISGYVNNNRIDVARKLFEVMPE-KNEVSWTAMLMGYTQCGRI-QDAWELFKAMPMKSVVASNS 166 (600)
Q Consensus 89 ~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-p~~~t~~~ll~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~ 166 (600)
.+.+.+..+|...--..+..+.+.+..+ +...+..... +|...-...+.++...+.. .....+...+..+|..+..+
T Consensus 625 ~L~~~L~D~d~~VR~~Av~~L~~~~~~~-~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~~d~~VR~~ 703 (897)
T PRK13800 625 ELAPYLADPDPGVRRTAVAVLTETTPPG-FGPALVAALGDGAAAVRRAAAEGLRELVEVLPPAPALRDHLGSPDPVVRAA 703 (897)
T ss_pred HHHHHhcCCCHHHHHHHHHHHhhhcchh-HHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCchHHHHHHhcCCCHHHHHH
Confidence 3334444555555555555555555433 3333333333 5444444444444333221 11111222222455555555
Q ss_pred HHHHHHhcCCHHHHHHHHHhcccCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCchhHhhHHHHHhhhcchHH-
Q 007517 167 MILGLGQNGEVQKARVVFDQMREKDDATWSGMIKVYERKGYELEVIDLFTLMQKEGVRVNFPSLISVLSVCASLASLDH- 245 (600)
Q Consensus 167 li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~- 245 (600)
.+..+...+.- ....+...+..+|...-...+.++.+.+..+.. .... -.++...-.....++...+..+.
T Consensus 704 A~~aL~~~~~~-~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~l----~~~l---~D~~~~VR~~aa~aL~~~~~~~~~ 775 (897)
T PRK13800 704 ALDVLRALRAG-DAALFAAALGDPDHRVRIEAVRALVSVDDVESV----AGAA---TDENREVRIAVAKGLATLGAGGAP 775 (897)
T ss_pred HHHHHHhhccC-CHHHHHHHhcCCCHHHHHHHHHHHhcccCcHHH----HHHh---cCCCHHHHHHHHHHHHHhccccch
Confidence 56655544321 122344555556665555556666555443221 1121 13344444445555555554332
Q ss_pred HHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHH-hhhhhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 007517 246 GRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGK-LIFDNFASKDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGV 324 (600)
Q Consensus 246 a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~-~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 324 (600)
+...+..+.+ .+|..+-.+.+..+.+.|..+.+. .+...+..+|...-...+.++...+. +++...+..+.+
T Consensus 776 ~~~~L~~ll~---D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-~~a~~~L~~~L~--- 848 (897)
T PRK13800 776 AGDAVRALTG---DPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAA-DVAVPALVEALT--- 848 (897)
T ss_pred hHHHHHHHhc---CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccc-cchHHHHHHHhc---
Confidence 2233333332 456777777888888888765442 34444555666666666777777665 466677666664
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHhHh
Q 007517 325 MPDDVTLVGVLSACSYTGKVKEGREIFESMKS 356 (600)
Q Consensus 325 ~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 356 (600)
.|+...=...+.++...+.-..+...+....+
T Consensus 849 D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 849 DPHLDVRKAAVLALTRWPGDPAARDALTTALT 880 (897)
T ss_pred CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHh
Confidence 56666666667777765444566666666655
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=90.30 E-value=2 Score=40.60 Aligned_cols=76 Identities=12% Similarity=0.167 Sum_probs=60.0
Q ss_pred hhhHHHHHHHHHHcCCHHHHHhhhhhcCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHH-----CCCCCCHHHHHH
Q 007517 262 VYVASVLITMYIKCGELVKGKLIFDNFAS---KDIVMWNSIISGYAQYGLGEKSLKVFHEMFS-----SGVMPDDVTLVG 333 (600)
Q Consensus 262 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~t~~~ 333 (600)
..++..++..+..+|+.+.+.+.++++.. -|...|..++.+|.+.|+...|+..|+++.+ .|+.|-..+...
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 34667788889999999999988888765 3678899999999999999999999988865 467777666554
Q ss_pred HHHH
Q 007517 334 VLSA 337 (600)
Q Consensus 334 ll~a 337 (600)
...+
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 4444
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=90.22 E-value=19 Score=34.92 Aligned_cols=134 Identities=13% Similarity=0.206 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHHcCCccCchhHhhHHHHHhh--h----cchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHH
Q 007517 209 LEVIDLFTLMQKEGVRVNFPSLISVLSVCAS--L----ASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGK 282 (600)
Q Consensus 209 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~--~----~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~ 282 (600)
.+.+.+++.|.+.|.+-+..+|.+....... . .....+..+|+.|++.-.-.+
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLT--------------------- 137 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLT--------------------- 137 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCcccc---------------------
Confidence 4556777888888888887777665444333 1 124456666666666431000
Q ss_pred hhhhhcCCCCHHHHHHHHHHHHhcCC----hHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHhccCC--HHHHHHHHHHh
Q 007517 283 LIFDNFASKDIVMWNSIISGYAQYGL----GEKSLKVFHEMFSSGVMPDDV--TLVGVLSACSYTGK--VKEGREIFESM 354 (600)
Q Consensus 283 ~~~~~~~~~~~~~~~~li~~~~~~g~----~~~A~~~~~~m~~~g~~p~~~--t~~~ll~a~~~~g~--~~~a~~~~~~~ 354 (600)
.++-.++.+|+.. ..++ .+.+..+|+.+.+.|+..+.. ....+|..+..... ...+.++++.+
T Consensus 138 -------s~~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l 208 (297)
T PF13170_consen 138 -------SPEDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNAL 208 (297)
T ss_pred -------CccchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHH
Confidence 0122223333222 1111 246667777777777665443 33333333322222 34667777777
Q ss_pred HhcCCCCCChHHHHHHHHH
Q 007517 355 KSKYLVEPKTEHYACMVDL 373 (600)
Q Consensus 355 ~~~~~~~p~~~~~~~li~~ 373 (600)
.+. ++++...+|..+.-+
T Consensus 209 ~~~-~~kik~~~yp~lGlL 226 (297)
T PF13170_consen 209 KKN-GVKIKYMHYPTLGLL 226 (297)
T ss_pred HHc-CCccccccccHHHHH
Confidence 765 778777777655433
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=89.51 E-value=11 Score=31.10 Aligned_cols=62 Identities=16% Similarity=0.197 Sum_probs=39.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhc
Q 007517 295 MWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSK 357 (600)
Q Consensus 295 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 357 (600)
..+..+......|+-++-.+++.++.+. -.|++.....+..||.+.|+..++.+++.+..++
T Consensus 88 ~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 88 YVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEK 149 (161)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 3444566677777777777777777652 3666777777777888888888888887777765
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.45 E-value=27 Score=35.70 Aligned_cols=103 Identities=14% Similarity=0.201 Sum_probs=74.2
Q ss_pred CCCCHHHHH-HHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHH---hhcCCHHHHHHHHHhC--CCCCCHH
Q 007517 324 VMPDDVTLV-GVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLL---GRAGQVEDAMKLIEAM--PFEPDAI 397 (600)
Q Consensus 324 ~~p~~~t~~-~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~---~~~g~~~~A~~~~~~m--~~~p~~~ 397 (600)
..|+..|+. .++.-+-..|-...|+..+..+..- -+|+...|.-+|+.= ..+| +..+.+.++.| .+..|+.
T Consensus 455 ~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~l--pp~sl~l~r~miq~e~~~~sc~-l~~~r~~yd~a~~~fg~d~~ 531 (568)
T KOG2396|consen 455 IGADSVTLKSKYLDWAYESGGYKKARKVYKSLQEL--PPFSLDLFRKMIQFEKEQESCN-LANIREYYDRALREFGADSD 531 (568)
T ss_pred cCCceeehhHHHHHHHHHhcchHHHHHHHHHHHhC--CCccHHHHHHHHHHHhhHhhcC-chHHHHHHHHHHHHhCCChH
Confidence 467777654 4566677788888888888888763 356777888777653 3344 77778888877 3336888
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhc-cCCCC
Q 007517 398 IWGSLLGACRTHMKLDLAEVAAKKLLQ-LEPKN 429 (600)
Q Consensus 398 ~~~~ll~~~~~~g~~~~a~~~~~~~~~-~~p~~ 429 (600)
.|...+.--..+|..+.+-.++.++.+ ++|..
T Consensus 532 lw~~y~~~e~~~g~~en~~~~~~ra~ktl~~~~ 564 (568)
T KOG2396|consen 532 LWMDYMKEELPLGRPENCGQIYWRAMKTLQGES 564 (568)
T ss_pred HHHHHHHhhccCCCcccccHHHHHHHHhhChhh
Confidence 888888887888888888888777665 56654
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=89.33 E-value=15 Score=35.87 Aligned_cols=126 Identities=14% Similarity=0.039 Sum_probs=68.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCC-----CHHHHHHHHHHHhccCCHHHHHHHHHHh---HhcCCCCCChHHHHH-
Q 007517 299 IISGYAQYGLGEKSLKVFHEMFSSGVMP-----DDVTLVGVLSACSYTGKVKEGREIFESM---KSKYLVEPKTEHYAC- 369 (600)
Q Consensus 299 li~~~~~~g~~~~A~~~~~~m~~~g~~p-----~~~t~~~ll~a~~~~g~~~~a~~~~~~~---~~~~~~~p~~~~~~~- 369 (600)
|..++...+.++++++.|+...+..-.. .-..+..+-+.+.+..++++|.-+..+. ...+++..-..-|.+
T Consensus 128 ~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~ 207 (518)
T KOG1941|consen 128 MGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAM 207 (518)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHH
Confidence 4455555566677777776654421111 1134556666666666666665544332 222333222222322
Q ss_pred ----HHHHHhhcCCHHHHHHHHHhC-------CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 007517 370 ----MVDLLGRAGQVEDAMKLIEAM-------PFEP-DAIIWGSLLGACRTHMKLDLAEVAAKKLLQ 424 (600)
Q Consensus 370 ----li~~~~~~g~~~~A~~~~~~m-------~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 424 (600)
|.-+|...|++.+|.+..++. +-+| .......+.+.|+..|+.+.|..-++.+..
T Consensus 208 ~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 208 SLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMG 274 (518)
T ss_pred HHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHH
Confidence 233455666666666655543 3222 234456667778888888888887777665
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=89.30 E-value=13 Score=31.86 Aligned_cols=90 Identities=17% Similarity=0.178 Sum_probs=55.9
Q ss_pred HHHhccCCHHHHHHHHHHhHhcCCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHH
Q 007517 336 SACSYTGKVKEGREIFESMKSKYLVEPK-TEHYACMVDLLGRAGQVEDAMKLIEAM-PFEPDAIIWGSLLGACRTHMKLD 413 (600)
Q Consensus 336 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~ 413 (600)
..-...++.+.+..++..+.- +.|. +..-..-...+.+.|++++|..+|+++ .-.|....-..|+..|.....-.
T Consensus 18 ~~al~~~~~~D~e~lL~ALrv---LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~ 94 (160)
T PF09613_consen 18 SVALRLGDPDDAEALLDALRV---LRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDP 94 (160)
T ss_pred HHHHccCChHHHHHHHHHHHH---hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCCh
Confidence 334566788888888887765 3444 333344455677888999999999888 32455555566666666554433
Q ss_pred HHHHHHHHHhccCCC
Q 007517 414 LAEVAAKKLLQLEPK 428 (600)
Q Consensus 414 ~a~~~~~~~~~~~p~ 428 (600)
.=....+++++..++
T Consensus 95 ~Wr~~A~evle~~~d 109 (160)
T PF09613_consen 95 SWRRYADEVLESGAD 109 (160)
T ss_pred HHHHHHHHHHhcCCC
Confidence 344455556665553
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=89.27 E-value=0.9 Score=27.79 Aligned_cols=26 Identities=23% Similarity=0.296 Sum_probs=18.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHH
Q 007517 295 MWNSIISGYAQYGLGEKSLKVFHEMF 320 (600)
Q Consensus 295 ~~~~li~~~~~~g~~~~A~~~~~~m~ 320 (600)
+|+.|...|.+.|++++|+++|++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46667777777777777777777743
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=89.23 E-value=0.97 Score=29.15 Aligned_cols=25 Identities=20% Similarity=0.380 Sum_probs=16.2
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC
Q 007517 366 HYACMVDLLGRAGQVEDAMKLIEAM 390 (600)
Q Consensus 366 ~~~~li~~~~~~g~~~~A~~~~~~m 390 (600)
.+..+...|.+.|++++|.++|++.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~ 27 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRA 27 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4555666666666666666666665
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=89.14 E-value=66 Score=39.73 Aligned_cols=308 Identities=12% Similarity=0.040 Sum_probs=165.1
Q ss_pred HHHHHhcCCChHHHHHHHhhCC--C----CCccchhHHHHHHHhcCCHHHHHHHHHh-cccCChhhHHHHHHHHHHcCCh
Q 007517 136 MLMGYTQCGRIQDAWELFKAMP--M----KSVVASNSMILGLGQNGEVQKARVVFDQ-MREKDDATWSGMIKVYERKGYE 208 (600)
Q Consensus 136 ll~~~~~~g~~~~a~~~~~~~~--~----~~~~~~~~li~~~~~~g~~~~A~~~f~~-~~~~~~~~~~~li~~~~~~g~~ 208 (600)
+..+-.+++.+..|...++.-. + .....+..+...|+.-+++|....+... ..++ +...-|.-....|++
T Consensus 1389 La~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~---sl~~qil~~e~~g~~ 1465 (2382)
T KOG0890|consen 1389 LARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADP---SLYQQILEHEASGNW 1465 (2382)
T ss_pred HHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCc---cHHHHHHHHHhhccH
Confidence 3344556677777777777632 1 1112233444577777777776666552 2222 223345556778889
Q ss_pred HHHHHHHHHHHHcCCccCchhHhhHHHHHhhhcchHHHHHHHHHHHHcCCCCchh-hHHHHHHHHHHcCCHHHHHhhhhh
Q 007517 209 LEVIDLFTLMQKEGVRVNFPSLISVLSVCASLASLDHGRQVHAQLVRCQFDVDVY-VASVLITMYIKCGELVKGKLIFDN 287 (600)
Q Consensus 209 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~li~~y~~~g~~~~A~~~~~~ 287 (600)
..|...|+.+.+.+ ++...+++.++..-...+.++...-..+...... ++... .++.=+.+--+.++++.......
T Consensus 1466 ~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e~~l~- 1542 (2382)
T KOG0890|consen 1466 ADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLESYLS- 1542 (2382)
T ss_pred HHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhhhhhh-
Confidence 89999999887753 3336677777776666676666655444333322 22222 23333444467777777666655
Q ss_pred cCCCCHHHHHHH-H-HHHHhcC--ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHH----------H
Q 007517 288 FASKDIVMWNSI-I-SGYAQYG--LGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFE----------S 353 (600)
Q Consensus 288 ~~~~~~~~~~~l-i-~~~~~~g--~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~----------~ 353 (600)
..+..+|.+. + ....+.. +.-.-.++.+.+++.-+. =+.+|+..|.+..+.++.- .
T Consensus 1543 --~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~--------~lsa~s~~~Sy~~~Y~~~~kLH~l~el~~~ 1612 (2382)
T KOG0890|consen 1543 --DRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIE--------NLSACSIEGSYVRSYEILMKLHLLLELENS 1612 (2382)
T ss_pred --cccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhh--------hHHHhhccchHHHHHHHHHHHHHHHHHHHH
Confidence 4555666654 2 2222211 111111233333322111 1223333332222222111 1
Q ss_pred hHhcCCCCCCh------HHHHHHH---HHHhhcCCHHHHHH-HHHhCCCCC-----CHHHHHHHHHHHHHcCCHHHHHHH
Q 007517 354 MKSKYLVEPKT------EHYACMV---DLLGRAGQVEDAMK-LIEAMPFEP-----DAIIWGSLLGACRTHMKLDLAEVA 418 (600)
Q Consensus 354 ~~~~~~~~p~~------~~~~~li---~~~~~~g~~~~A~~-~~~~m~~~p-----~~~~~~~ll~~~~~~g~~~~a~~~ 418 (600)
.....++.++. .-|..-+ +-+.+...+--|.+ .+.....+| -..+|-.....++..|.++.|...
T Consensus 1613 ~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~na 1692 (2382)
T KOG0890|consen 1613 IEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNA 1692 (2382)
T ss_pred HHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHH
Confidence 11111222321 1222222 22222111111111 111111122 256799999999999999999998
Q ss_pred HHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 007517 419 AKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMRKRNV 461 (600)
Q Consensus 419 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 461 (600)
.-++.+..+ +..+...+......|+...|..+++.-.+...
T Consensus 1693 ll~A~e~r~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~ 1733 (2382)
T KOG0890|consen 1693 LLNAKESRL--PEIVLERAKLLWQTGDELNALSVLQEILSKNF 1733 (2382)
T ss_pred HHhhhhccc--chHHHHHHHHHHhhccHHHHHHHHHHHHHhhc
Confidence 888887774 36889999999999999999999998886554
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=89.08 E-value=0.65 Score=28.42 Aligned_cols=25 Identities=16% Similarity=0.007 Sum_probs=12.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHh
Q 007517 399 WGSLLGACRTHMKLDLAEVAAKKLL 423 (600)
Q Consensus 399 ~~~ll~~~~~~g~~~~a~~~~~~~~ 423 (600)
|..|...|...|++++|+.++++++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4444555555555555555555533
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=89.07 E-value=2 Score=40.64 Aligned_cols=61 Identities=20% Similarity=0.287 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007517 398 IWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMRK 458 (600)
Q Consensus 398 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 458 (600)
++..++..+...|+.+.+...++++++.+|-+-..|..+..+|...|+...|...++.+.+
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 3444555566666667777777777777776666677777777777777777777766654
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=88.83 E-value=1.6 Score=37.22 Aligned_cols=38 Identities=18% Similarity=0.011 Sum_probs=17.6
Q ss_pred HHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcC
Q 007517 407 RTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQG 444 (600)
Q Consensus 407 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 444 (600)
...|++.+|.++++.+.+-.|..+..-..++.++...|
T Consensus 55 i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~ 92 (160)
T PF09613_consen 55 IVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALG 92 (160)
T ss_pred HHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcC
Confidence 34455555555555554444444333333444443333
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=88.78 E-value=10 Score=33.47 Aligned_cols=94 Identities=14% Similarity=0.158 Sum_probs=48.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCC------hHH
Q 007517 295 MWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDV--TLVGVLSACSYTGKVKEGREIFESMKSKYLVEPK------TEH 366 (600)
Q Consensus 295 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~------~~~ 366 (600)
.+..+..-|.+.|+.++|++.|.++.+....|... .+..++..+...+++..+.....+...-..-..+ ...
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 44555556666666666666666666554444443 3445555566666666666665554432110011 122
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC
Q 007517 367 YACMVDLLGRAGQVEDAMKLIEAM 390 (600)
Q Consensus 367 ~~~li~~~~~~g~~~~A~~~~~~m 390 (600)
|..|.. ...|++.+|-+.|-..
T Consensus 118 ~~gL~~--l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 118 YEGLAN--LAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHHHH--HHhchHHHHHHHHHcc
Confidence 222222 3356777777776655
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=88.62 E-value=6.1 Score=34.11 Aligned_cols=54 Identities=11% Similarity=0.027 Sum_probs=27.6
Q ss_pred HcCCHHHHHhhhhhcCCC-C---HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 007517 274 KCGELVKGKLIFDNFASK-D---IVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPD 327 (600)
Q Consensus 274 ~~g~~~~A~~~~~~~~~~-~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 327 (600)
..|.+++.....+.+..+ + ...-.+|.-+-.+.|++.+|..+|.++......|.
T Consensus 144 D~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~apr 201 (221)
T COG4649 144 DNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAPR 201 (221)
T ss_pred ccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCcH
Confidence 345555555555444332 1 12334444455566666777777766655433443
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=88.39 E-value=42 Score=36.52 Aligned_cols=57 Identities=18% Similarity=0.252 Sum_probs=32.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhcc---CCCCC-chH-----HHHHHHHHhcCCchHHHHHHHHHH
Q 007517 401 SLLGACRTHMKLDLAEVAAKKLLQL---EPKNA-GPY-----ILLSNIYASQGRFHDVAELRKNMR 457 (600)
Q Consensus 401 ~ll~~~~~~g~~~~a~~~~~~~~~~---~p~~~-~~~-----~~l~~~~~~~g~~~~a~~~~~~m~ 457 (600)
++++.-.-.|+..+..........+ .|+.. ..+ ..+...|...|+.++|.+...+..
T Consensus 539 ~lm~~~lf~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~ 604 (608)
T PF10345_consen 539 NLMGHRLFEGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLD 604 (608)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 3444433367777666555554442 23221 222 235556778899999888877654
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=88.24 E-value=1.8 Score=36.28 Aligned_cols=53 Identities=11% Similarity=0.133 Sum_probs=36.8
Q ss_pred HcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 007517 408 THMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMRKRN 460 (600)
Q Consensus 408 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 460 (600)
..++.++++.++..+.-+.|+.+..-..-+..+...|+|++|.++++...+.+
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 35667777777777777777776666666777777777777777777666544
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >TIGR02270 conserved hypothetical protein | Back alignment and domain information |
|---|
Probab=87.85 E-value=34 Score=34.86 Aligned_cols=194 Identities=8% Similarity=-0.014 Sum_probs=95.0
Q ss_pred HHHHHhhCCCCCcccHHHHHHHHHhCCChHHHHHHHhhcCCCCcchHHHHHHHHhcCCChHHHHHHHhhCCCCCccchhH
Q 007517 87 GREIFDEMPKKNVISWTTMISGYVNNNRIDVARKLFEVMPEKNEVSWTAMLMGYTQCGRIQDAWELFKAMPMKSVVASNS 166 (600)
Q Consensus 87 A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 166 (600)
...+.+.+..++.......++++...+.....-.+......++.......+.++...+. +-...+...+...+..+...
T Consensus 88 ~~~L~~~L~d~~~~vr~aaa~ALg~i~~~~a~~~L~~~L~~~~p~vR~aal~al~~r~~-~~~~~L~~~L~d~d~~Vra~ 166 (410)
T TIGR02270 88 LRSVLAVLQAGPEGLCAGIQAALGWLGGRQAEPWLEPLLAASEPPGRAIGLAALGAHRH-DPGPALEAALTHEDALVRAA 166 (410)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhcCCchHHHHHHHHHhcCCChHHHHHHHHHHHhhcc-ChHHHHHHHhcCCCHHHHHH
Confidence 44444445455555566666666666655444443333333555555455555554331 22222333333555666666
Q ss_pred HHHHHHhcCCHHHHHHHHHhcccCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCchhHhhHHHHHhhhcchHHH
Q 007517 167 MILGLGQNGEVQKARVVFDQMREKDDATWSGMIKVYERKGYELEVIDLFTLMQKEGVRVNFPSLISVLSVCASLASLDHG 246 (600)
Q Consensus 167 li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 246 (600)
-+..++..++.+..-.+-.-....|...-..-+.+....|. .+|...+..+.. .|+......+.......|. +.+
T Consensus 167 A~raLG~l~~~~a~~~L~~al~d~~~~VR~aA~~al~~lG~-~~A~~~l~~~~~---~~g~~~~~~l~~~lal~~~-~~a 241 (410)
T TIGR02270 167 ALRALGELPRRLSESTLRLYLRDSDPEVRFAALEAGLLAGS-RLAWGVCRRFQV---LEGGPHRQRLLVLLAVAGG-PDA 241 (410)
T ss_pred HHHHHHhhccccchHHHHHHHcCCCHHHHHHHHHHHHHcCC-HhHHHHHHHHHh---ccCccHHHHHHHHHHhCCc-hhH
Confidence 66666666654433333333444566555556666666666 555555444322 2222222222222222222 233
Q ss_pred HHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHhhhhhcCCC
Q 007517 247 RQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFASK 291 (600)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~ 291 (600)
...+..+.+. + .+-...+.+..+.|+...+.-+.+.|..+
T Consensus 242 ~~~L~~ll~d---~--~vr~~a~~AlG~lg~p~av~~L~~~l~d~ 281 (410)
T TIGR02270 242 QAWLRELLQA---A--ATRREALRAVGLVGDVEAAPWCLEAMREP 281 (410)
T ss_pred HHHHHHHhcC---h--hhHHHHHHHHHHcCCcchHHHHHHHhcCc
Confidence 3333333332 1 25556666777777777666666666543
|
Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown. |
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=87.80 E-value=17 Score=33.15 Aligned_cols=61 Identities=13% Similarity=0.022 Sum_probs=32.9
Q ss_pred HHHHHHhhc-CCHHHHHHHHHhC-----CCCCCHHHHHHHHHH---HHHcCCHHHHHHHHHHHhccCCCC
Q 007517 369 CMVDLLGRA-GQVEDAMKLIEAM-----PFEPDAIIWGSLLGA---CRTHMKLDLAEVAAKKLLQLEPKN 429 (600)
Q Consensus 369 ~li~~~~~~-g~~~~A~~~~~~m-----~~~p~~~~~~~ll~~---~~~~g~~~~a~~~~~~~~~~~p~~ 429 (600)
.+.+.|... .++++|...++.. +-+.+...-..++.+ -...+++.+|..+|++......++
T Consensus 118 ~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n 187 (288)
T KOG1586|consen 118 EIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDN 187 (288)
T ss_pred hHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 344444443 4555555555554 112222223333332 345678899999999887754444
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=87.39 E-value=27 Score=34.66 Aligned_cols=68 Identities=19% Similarity=0.247 Sum_probs=56.3
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC----CCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 007517 394 PDAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEP----KNAGPYILLSNIYASQGRFHDVAELRKNMRKRNV 461 (600)
Q Consensus 394 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p----~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 461 (600)
....+|..+...+++.|.++.|...+.++....+ ..|.....-+......|+..+|...++...+..+
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~ 215 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRL 215 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence 4566899999999999999999999999988652 2456677788999999999999999888877333
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=87.38 E-value=17 Score=33.86 Aligned_cols=139 Identities=12% Similarity=0.099 Sum_probs=82.0
Q ss_pred CChHHHHHHHhhCCC----CC---cccHHHHHHHHHhCCChHHHHHHHhhcCC---------CCcchHHHHHHHHhcCCC
Q 007517 82 GRVDEGREIFDEMPK----KN---VISWTTMISGYVNNNRIDVARKLFEVMPE---------KNEVSWTAMLMGYTQCGR 145 (600)
Q Consensus 82 g~~~~A~~~~~~m~~----~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~---------p~~~t~~~ll~~~~~~g~ 145 (600)
..+++|..-|++..+ +. -.+.-.+|..+.+.|++++.++.+.+|.. -+..+.+++++-.....+
T Consensus 41 ~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~ 120 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKN 120 (440)
T ss_pred cCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhh
Confidence 355666666655432 11 12344567777777888777777777754 233456667766666666
Q ss_pred hHHHHHHHhhCC-----CCCccc----hhHHHHHHHhcCCHHHHHHHHHhcccC---------------ChhhHHHHHHH
Q 007517 146 IQDAWELFKAMP-----MKSVVA----SNSMILGLGQNGEVQKARVVFDQMREK---------------DDATWSGMIKV 201 (600)
Q Consensus 146 ~~~a~~~~~~~~-----~~~~~~----~~~li~~~~~~g~~~~A~~~f~~~~~~---------------~~~~~~~li~~ 201 (600)
.+.-..+++.-. ..+... -..|...|...|.+.+-.+++.++... -...|..=|..
T Consensus 121 m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQm 200 (440)
T KOG1464|consen 121 MDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQM 200 (440)
T ss_pred hHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhh
Confidence 555555554433 223332 345677777777777777777666421 13456666777
Q ss_pred HHHcCChHHHHHHHHHHHH
Q 007517 202 YERKGYELEVIDLFTLMQK 220 (600)
Q Consensus 202 ~~~~g~~~~A~~~~~~m~~ 220 (600)
|....+-.+-..+|++...
T Consensus 201 YT~qKnNKkLK~lYeqalh 219 (440)
T KOG1464|consen 201 YTEQKNNKKLKALYEQALH 219 (440)
T ss_pred hhhhcccHHHHHHHHHHHH
Confidence 7777666666666766543
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=86.99 E-value=0.023 Score=48.49 Aligned_cols=55 Identities=16% Similarity=0.149 Sum_probs=29.1
Q ss_pred hHHHHHhhhcchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHhhhh
Q 007517 232 SVLSVCASLASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFD 286 (600)
Q Consensus 232 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~ 286 (600)
.++..+.+.+.......+++.+.+.+...+....+.++..|++.++.+...++++
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 4455555556666666666666655444445555555555555544444444444
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=86.99 E-value=3.8 Score=27.75 Aligned_cols=50 Identities=12% Similarity=0.167 Sum_probs=37.4
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHhCCCccCCceeEEEeCCEEEEEEcCCCCCCCChHHHHHHHHHHHHHHHHcCc
Q 007517 433 YILLSNIYASQGRFHDVAELRKNMRKRNVIKPPGCSWIEVEKKVHMFTGRDCVSHPEHPMIMRMLEKIGGLLREAGY 509 (600)
Q Consensus 433 ~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~~~~~~l~~l~~~~~~~g~ 509 (600)
...++-++.+.|++++|.++.+.+.+. .|...+.......+.+.|++.|.
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~~---------------------------eP~N~Qa~~L~~~i~~~i~kdgl 53 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLEI---------------------------EPDNRQAQSLKELIEDKIQKDGL 53 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHH---------------------------TTS-HHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhh---------------------------CCCcHHHHHHHHHHHHHHhccCC
Confidence 456788899999999999999998763 56666666666777788887774
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=86.82 E-value=5.5 Score=40.04 Aligned_cols=85 Identities=13% Similarity=0.041 Sum_probs=43.1
Q ss_pred HhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHH
Q 007517 374 LGRAGQVEDAMKLIEAM--PFEPDAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAE 451 (600)
Q Consensus 374 ~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 451 (600)
....|.++.+.+.+... -+.....+...++......|+.+.|....+.++.-+-+++......+..--..|.++++.-
T Consensus 333 ~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~ 412 (831)
T PRK15180 333 FSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYH 412 (831)
T ss_pred HHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccCChhheeeecccHHHHhHHHHHHH
Confidence 44555666665555544 1222344455555555555666666666666665444443333332333334455566666
Q ss_pred HHHHHHh
Q 007517 452 LRKNMRK 458 (600)
Q Consensus 452 ~~~~m~~ 458 (600)
.+++...
T Consensus 413 ~wk~~~~ 419 (831)
T PRK15180 413 YWKRVLL 419 (831)
T ss_pred HHHHHhc
Confidence 6665544
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=86.77 E-value=21 Score=38.78 Aligned_cols=43 Identities=21% Similarity=0.243 Sum_probs=23.4
Q ss_pred ccHHHHHHHHHhCCChHHHHHHHhhcCC---CCcchHHHHHHHHhcC
Q 007517 100 ISWTTMISGYVNNNRIDVARKLFEVMPE---KNEVSWTAMLMGYTQC 143 (600)
Q Consensus 100 ~~~~~li~~~~~~g~~~~A~~~~~~m~~---p~~~t~~~ll~~~~~~ 143 (600)
..|. +|--+.++|++++|.++...... .....|...+..+...
T Consensus 113 p~Wa-~Iyy~LR~G~~~~A~~~~~~~~~~~~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 113 PIWA-LIYYCLRCGDYDEALEVANENRNQFQKIERSFPTYLKAYASS 158 (613)
T ss_dssp EHHH-HHHHHHTTT-HHHHHHHHHHTGGGS-TTTTHHHHHHHHCTTT
T ss_pred ccHH-HHHHHHhcCCHHHHHHHHHHhhhhhcchhHHHHHHHHHHHhC
Confidence 3443 44456677777777777644443 3345556666666543
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=86.02 E-value=22 Score=30.87 Aligned_cols=85 Identities=18% Similarity=0.261 Sum_probs=43.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHH
Q 007517 295 MWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLL 374 (600)
Q Consensus 295 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~ 374 (600)
.|..+|..+.+.|++. .+.++...++-||+......+-... +....+.++--.|.++.+ ..+..+++.+
T Consensus 31 L~~lli~lLi~~~~~~----~L~qllq~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkRL~-----~~~~~iievL 99 (167)
T PF07035_consen 31 LYELLIDLLIRNGQFS----QLHQLLQYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKRLG-----TAYEEIIEVL 99 (167)
T ss_pred HHHHHHHHHHHcCCHH----HHHHHHhhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHHhh-----hhHHHHHHHH
Confidence 3334444444444432 3344555566666665554443322 233344444444443211 1355566777
Q ss_pred hhcCCHHHHHHHHHhC
Q 007517 375 GRAGQVEDAMKLIEAM 390 (600)
Q Consensus 375 ~~~g~~~~A~~~~~~m 390 (600)
...|++-+|.++.++.
T Consensus 100 L~~g~vl~ALr~ar~~ 115 (167)
T PF07035_consen 100 LSKGQVLEALRYARQY 115 (167)
T ss_pred HhCCCHHHHHHHHHHc
Confidence 7777777777777664
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=85.80 E-value=2 Score=25.59 Aligned_cols=28 Identities=18% Similarity=0.307 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 007517 294 VMWNSIISGYAQYGLGEKSLKVFHEMFS 321 (600)
Q Consensus 294 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 321 (600)
.+|..+...|...|++++|+..|++.++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 3577777777888888888888887765
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=85.66 E-value=23 Score=30.76 Aligned_cols=136 Identities=10% Similarity=0.106 Sum_probs=86.0
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcC--CHHHHHHHHHh
Q 007517 312 SLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAG--QVEDAMKLIEA 389 (600)
Q Consensus 312 A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g--~~~~A~~~~~~ 389 (600)
-+++.+.+.+.|+.|+...+..++..+.+.|....-.++++. ++-+|.....+.+-.++... -.+-|.+.+.+
T Consensus 13 llEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~-----~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkR 87 (167)
T PF07035_consen 13 LLEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQY-----HVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKR 87 (167)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhh-----cccCCcHHHHHHHHHhHccChHHHHHHHHHHHH
Confidence 356677778889999999999999999999998887776652 44455544444443333221 13445555555
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 007517 390 MPFEPDAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMRKRN 460 (600)
Q Consensus 390 m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 460 (600)
++. .+..++..+...|++-+|.++.++....+.- ....+..+-.+.++...-..+++-..+++
T Consensus 88 L~~-----~~~~iievLL~~g~vl~ALr~ar~~~~~~~~---~~~~fLeAA~~~~D~~lf~~V~~ff~~~n 150 (167)
T PF07035_consen 88 LGT-----AYEEIIEVLLSKGQVLEALRYARQYHKVDSV---PARKFLEAAANSNDDQLFYAVFRFFEERN 150 (167)
T ss_pred hhh-----hHHHHHHHHHhCCCHHHHHHHHHHcCCcccC---CHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 541 2344556777899999999998876443322 22344555555566555556666655544
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=85.48 E-value=8.7 Score=33.54 Aligned_cols=44 Identities=18% Similarity=0.209 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCCc
Q 007517 412 LDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMRKRNVI 462 (600)
Q Consensus 412 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 462 (600)
+++|...|+++...+|++ ..|..-+.+. ++|-+++.++.+.+..
T Consensus 96 F~kA~~~FqkAv~~~P~n-e~Y~ksLe~~------~kap~lh~e~~~~~~~ 139 (186)
T PF06552_consen 96 FEKATEYFQKAVDEDPNN-ELYRKSLEMA------AKAPELHMEIHKQGLG 139 (186)
T ss_dssp HHHHHHHHHHHHHH-TT--HHHHHHHHHH------HTHHHHHHHHHHSSS-
T ss_pred HHHHHHHHHHHHhcCCCc-HHHHHHHHHH------HhhHHHHHHHHHHHhh
Confidence 567888888888899998 6666655554 4678888888777654
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=84.73 E-value=80 Score=36.16 Aligned_cols=107 Identities=12% Similarity=0.090 Sum_probs=48.0
Q ss_pred HHcCCHHHHHhhhhhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHH
Q 007517 273 IKCGELVKGKLIFDNFASKDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFE 352 (600)
Q Consensus 273 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 352 (600)
-+.|.+.+|..++.--.++--..|.+-..-+.+.+.+++|--+|+..-+ .--.+.++...|+++++..+..
T Consensus 919 ~kh~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ 989 (1265)
T KOG1920|consen 919 KKHGLYDEALALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAA 989 (1265)
T ss_pred HhcccchhhhheeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHH
Confidence 3444455555444332222223333333333444555555555443311 1123445555566666666655
Q ss_pred HhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC
Q 007517 353 SMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM 390 (600)
Q Consensus 353 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 390 (600)
++.. +-.--..+-..|+.-+...++.-+|-++..+.
T Consensus 990 ql~~--~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~ 1025 (1265)
T KOG1920|consen 990 QLSE--GKDELVILAEELVSRLVEQRKHYEAAKILLEY 1025 (1265)
T ss_pred hhcC--CHHHHHHHHHHHHHHHHHcccchhHHHHHHHH
Confidence 4432 10011122244555555666666666665555
|
|
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=84.66 E-value=3.4 Score=27.97 Aligned_cols=30 Identities=23% Similarity=0.190 Sum_probs=24.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhccCCCCC
Q 007517 401 SLLGACRTHMKLDLAEVAAKKLLQLEPKNA 430 (600)
Q Consensus 401 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 430 (600)
.+.-++.+.|+++.|.+..+.+++.+|++.
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~ 35 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLEIEPDNR 35 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHTTS-H
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhCCCcH
Confidence 455678899999999999999999999984
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=84.60 E-value=13 Score=32.85 Aligned_cols=95 Identities=19% Similarity=0.075 Sum_probs=65.1
Q ss_pred hhHHHHHHHHHHcCCHHHHHhhhhhcCCC------CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC---CCHHHHHH
Q 007517 263 YVASVLITMYIKCGELVKGKLIFDNFASK------DIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVM---PDDVTLVG 333 (600)
Q Consensus 263 ~~~~~li~~y~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~---p~~~t~~~ 333 (600)
..+..+.+.|.+.|+.+.|.+.|.++.+. -+..+-.+|......|++..+.....+....--. ++...-..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 45667889999999999999999988764 2346677888888899999988888776543222 22222111
Q ss_pred HHH--HHhccCCHHHHHHHHHHhHhc
Q 007517 334 VLS--ACSYTGKVKEGREIFESMKSK 357 (600)
Q Consensus 334 ll~--a~~~~g~~~~a~~~~~~~~~~ 357 (600)
+.. ++...+++..|-+.|-.....
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~~t 142 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSLST 142 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccCcC
Confidence 211 234567888888888766543
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=83.94 E-value=8.4 Score=36.58 Aligned_cols=62 Identities=21% Similarity=0.170 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007517 398 IWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMRKR 459 (600)
Q Consensus 398 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 459 (600)
..+.|-.+|.+.++++.|+++.+.++.+.|++|.-+.--+-+|.+.|.+..|..=++...+.
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~ 244 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ 244 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 35667788999999999999999999999999888888999999999999999988877654
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=83.67 E-value=2.6 Score=26.37 Aligned_cols=27 Identities=19% Similarity=0.159 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 007517 398 IWGSLLGACRTHMKLDLAEVAAKKLLQ 424 (600)
Q Consensus 398 ~~~~ll~~~~~~g~~~~a~~~~~~~~~ 424 (600)
+++.|...|...|++++|+.+++++++
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 344444455555555555555544443
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=83.64 E-value=23 Score=37.08 Aligned_cols=149 Identities=15% Similarity=0.087 Sum_probs=103.0
Q ss_pred HcCCHHHHHhhhhhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCCHHHHHHHHH
Q 007517 274 KCGELVKGKLIFDNFASKDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDV-TLVGVLSACSYTGKVKEGREIFE 352 (600)
Q Consensus 274 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~ 352 (600)
-.|+++.|..++-.++++ .-+.++.-+-..|..++|+++ .||.. -|.. ..+.|+++.|.++..
T Consensus 598 mrrd~~~a~~vLp~I~k~---~rt~va~Fle~~g~~e~AL~~---------s~D~d~rFel----al~lgrl~iA~~la~ 661 (794)
T KOG0276|consen 598 LRRDLEVADGVLPTIPKE---IRTKVAHFLESQGMKEQALEL---------STDPDQRFEL----ALKLGRLDIAFDLAV 661 (794)
T ss_pred hhccccccccccccCchh---hhhhHHhHhhhccchHhhhhc---------CCChhhhhhh----hhhcCcHHHHHHHHH
Confidence 457888887777766632 334455666677777777654 33332 2322 236789999988765
Q ss_pred HhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCch
Q 007517 353 SMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAMPFEPDAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGP 432 (600)
Q Consensus 353 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 432 (600)
+. .+..-|..|.++..+.|++..|.+-|.... -|..|+-.+...|+.+.-..+.....+...+|
T Consensus 662 e~-------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~------d~~~LlLl~t~~g~~~~l~~la~~~~~~g~~N--- 725 (794)
T KOG0276|consen 662 EA-------NSEVKWRQLGDAALSAGELPLASECFLRAR------DLGSLLLLYTSSGNAEGLAVLASLAKKQGKNN--- 725 (794)
T ss_pred hh-------cchHHHHHHHHHHhhcccchhHHHHHHhhc------chhhhhhhhhhcCChhHHHHHHHHHHhhcccc---
Confidence 43 346679999999999999999999988652 35667777778888776666666666666555
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHH
Q 007517 433 YILLSNIYASQGRFHDVAELRKNM 456 (600)
Q Consensus 433 ~~~l~~~~~~~g~~~~a~~~~~~m 456 (600)
.-..+|...|++++..+++.+-
T Consensus 726 --~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 726 --LAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred --hHHHHHHHcCCHHHHHHHHHhc
Confidence 2334677889999999887653
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=83.58 E-value=2 Score=41.15 Aligned_cols=111 Identities=16% Similarity=0.072 Sum_probs=78.8
Q ss_pred HHHHhccCCHHHHHHHHHHhHhcCCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHcCC
Q 007517 335 LSACSYTGKVKEGREIFESMKSKYLVEP-KTEHYACMVDLLGRAGQVEDAMKLIEAM-PFE-PDAIIWGSLLGACRTHMK 411 (600)
Q Consensus 335 l~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~g~ 411 (600)
-.-|.+.|.+++|...+...... .| ++.++..-..+|.+..++..|+.-.+.. .+. .-...|..-+.+-...|+
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~---~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~ 180 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAV---YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGN 180 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhcc---CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhh
Confidence 34577889999999999887653 45 8888988999999999999888766654 211 112345555555556788
Q ss_pred HHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHH
Q 007517 412 LDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAEL 452 (600)
Q Consensus 412 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 452 (600)
.++|..-++..++++|++ ..|-..|+......|+.-+
T Consensus 181 ~~EAKkD~E~vL~LEP~~----~ELkK~~a~i~Sl~E~~I~ 217 (536)
T KOG4648|consen 181 NMEAKKDCETVLALEPKN----IELKKSLARINSLRERKIA 217 (536)
T ss_pred HHHHHHhHHHHHhhCccc----HHHHHHHHHhcchHhhhHH
Confidence 999999999999999986 3444555555555555433
|
|
| >KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=83.48 E-value=11 Score=31.05 Aligned_cols=47 Identities=11% Similarity=0.063 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHhc-cCCCCC-chHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007517 412 LDLAEVAAKKLLQ-LEPKNA-GPYILLSNIYASQGRFHDVAELRKNMRK 458 (600)
Q Consensus 412 ~~~a~~~~~~~~~-~~p~~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 458 (600)
..++..+++.+.+ -.|... .....|+-.+.+.|++++++++.+...+
T Consensus 51 v~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~ 99 (149)
T KOG3364|consen 51 VQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLE 99 (149)
T ss_pred HHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHh
Confidence 3445555555554 233321 2223344555566666666666555543
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=83.42 E-value=10 Score=36.12 Aligned_cols=97 Identities=11% Similarity=0.188 Sum_probs=70.7
Q ss_pred CCCCchhhHHHHHHHHHHcCCHHHHHhhhhhcCC-C--------CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 007517 257 QFDVDVYVASVLITMYIKCGELVKGKLIFDNFAS-K--------DIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPD 327 (600)
Q Consensus 257 ~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-~--------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 327 (600)
|.+....+...++..-....+++++...+-++.. + ..++|--++. .-++++++.++..=++.|+-||
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlll----ky~pq~~i~~l~npIqYGiF~d 134 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLL----KYDPQKAIYTLVNPIQYGIFPD 134 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHH----ccChHHHHHHHhCcchhccccc
Confidence 4555556666677666667788888777766543 1 3344443333 3367789999988889999999
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHhHhc
Q 007517 328 DVTLVGVLSACSYTGKVKEGREIFESMKSK 357 (600)
Q Consensus 328 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 357 (600)
..|++.++..+.+.+++.+|.++.-.|...
T Consensus 135 qf~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 135 QFTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 999999999999999999988887666543
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=82.69 E-value=78 Score=34.45 Aligned_cols=99 Identities=9% Similarity=0.084 Sum_probs=67.6
Q ss_pred HHHHHhCCChHHHHHHHhhCCCCC-----cchHHHHHHHHHcCCCHHHHHHHHccCCCCCcchHHHHHHHHHhcCChHHH
Q 007517 13 VRGYVEEGMITEAGTLFWQMPEKN-----VVSWTVMLGGFIRDSRIDDARRLFDMMPEKDVVAQTNMVLGYCQDGRVDEG 87 (600)
Q Consensus 13 l~~~~~~g~~~~A~~~~~~m~~~~-----~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A 87 (600)
|..+.+.+.+++|+..-+.....- ...+-..+..+...|++++|-.+.-.|...+..-|---+.-++..++....
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~I 442 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDI 442 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccchh
Confidence 567788899999999887766321 235777788888899999999988888877777777777777777666554
Q ss_pred HHHHhhCCC-CCcccHHHHHHHHHh
Q 007517 88 REIFDEMPK-KNVISWTTMISGYVN 111 (600)
Q Consensus 88 ~~~~~~m~~-~~~~~~~~li~~~~~ 111 (600)
..++=.-+. -+...|..++-.+..
T Consensus 443 a~~lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 443 APYLPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred hccCCCCCcccCchHHHHHHHHHHH
Confidence 433211111 133456666665554
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=82.66 E-value=62 Score=33.33 Aligned_cols=159 Identities=8% Similarity=0.087 Sum_probs=82.4
Q ss_pred cCchhHhhHHHHHhhhcchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHhhhhhcCC---CCHHHHHHHHH
Q 007517 225 VNFPSLISVLSVCASLASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFAS---KDIVMWNSIIS 301 (600)
Q Consensus 225 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~ 301 (600)
.|...+.+++..+.......-...+..++...| .+...+-.++..|... ..++-..+++++.+ .|++.-..|..
T Consensus 64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~ 140 (711)
T COG1747 64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELAD 140 (711)
T ss_pred ccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHH
Confidence 355555566666666666666666666665544 3444555566666655 33444445553333 33333333333
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHh
Q 007517 302 GYAQYGLGEKSLKVFHEMFSSGVMPDD------VTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLG 375 (600)
Q Consensus 302 ~~~~~g~~~~A~~~~~~m~~~g~~p~~------~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~ 375 (600)
-|-+ ++.+.+..+|.+.... +-|-. ..|.-+... -..+.+.-.++...+.++.|...-...+.-+-.-|.
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~yr-fI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys 216 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKALYR-FIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYS 216 (711)
T ss_pred HHHH-hchhhHHHHHHHHHHH-hcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhc
Confidence 3333 5556666666665543 12210 112222211 123455555555566555554444555555666677
Q ss_pred hcCCHHHHHHHHHhC
Q 007517 376 RAGQVEDAMKLIEAM 390 (600)
Q Consensus 376 ~~g~~~~A~~~~~~m 390 (600)
...++++|.+++..+
T Consensus 217 ~~eN~~eai~Ilk~i 231 (711)
T COG1747 217 ENENWTEAIRILKHI 231 (711)
T ss_pred cccCHHHHHHHHHHH
Confidence 777777777777654
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=81.51 E-value=21 Score=30.21 Aligned_cols=26 Identities=8% Similarity=0.184 Sum_probs=13.1
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHH
Q 007517 194 TWSGMIKVYERKGYELEVIDLFTLMQ 219 (600)
Q Consensus 194 ~~~~li~~~~~~g~~~~A~~~~~~m~ 219 (600)
.|..........|...++..+.+.+.
T Consensus 95 ~Wr~~A~~~le~~~~~~a~~Lv~al~ 120 (153)
T TIGR02561 95 EWHVHADEVLARDADADAVALVRALL 120 (153)
T ss_pred HHHHHHHHHHHhCCCHhHHHHHHHHh
Confidence 34444444445555555555555554
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=81.49 E-value=1.7 Score=24.20 Aligned_cols=24 Identities=17% Similarity=0.236 Sum_probs=17.2
Q ss_pred chHHHHHHHHHhcCCchHHHHHHH
Q 007517 431 GPYILLSNIYASQGRFHDVAELRK 454 (600)
Q Consensus 431 ~~~~~l~~~~~~~g~~~~a~~~~~ 454 (600)
.....++.++...|++++|..+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 345667777888888888877654
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=80.71 E-value=2.2 Score=25.23 Aligned_cols=29 Identities=14% Similarity=0.281 Sum_probs=24.4
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007517 431 GPYILLSNIYASQGRFHDVAELRKNMRKR 459 (600)
Q Consensus 431 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 459 (600)
..+..++.+|...|++++|.+.+++..+.
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 46788999999999999999999988653
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >TIGR02508 type_III_yscG type III secretion protein, YscG family | Back alignment and domain information |
|---|
Probab=80.69 E-value=25 Score=27.38 Aligned_cols=62 Identities=18% Similarity=0.300 Sum_probs=46.6
Q ss_pred HHHHHHcCCHHHHHhhhhhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 007517 269 ITMYIKCGELVKGKLIFDNFASKDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVG 333 (600)
Q Consensus 269 i~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 333 (600)
+..+...|++++|..+.+....||+..|-+|-.. +.|..+++..-+.+|...| .|...+|..
T Consensus 46 lsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce~--rlGl~s~l~~rl~rla~sg-~p~lq~Faa 107 (115)
T TIGR02508 46 LSSLMNRGDYQSALQLGNKLCYPDLEPWLALCEW--RLGLGSALESRLNRLAASG-DPRLQTFVA 107 (115)
T ss_pred HHHHHccchHHHHHHhcCCCCCchHHHHHHHHHH--hhccHHHHHHHHHHHHhCC-CHHHHHHHH
Confidence 3445678999999999999988999999887553 5677777777777887776 666666644
|
YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc. |
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=80.66 E-value=3.1 Score=25.06 Aligned_cols=24 Identities=13% Similarity=0.221 Sum_probs=12.5
Q ss_pred CCchhhHHHHHHHHHHcCCHHHHH
Q 007517 259 DVDVYVASVLITMYIKCGELVKGK 282 (600)
Q Consensus 259 ~~~~~~~~~li~~y~~~g~~~~A~ 282 (600)
|.+..+++.|...|...|++++|+
T Consensus 10 P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 10 PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 334455555555555555555543
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=80.46 E-value=53 Score=31.85 Aligned_cols=115 Identities=13% Similarity=0.176 Sum_probs=63.0
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc--cC----CHHHHHHHHHHhHhcCCCCC--ChHHHHHHHHHHhhcCCH
Q 007517 309 GEKSLKVFHEMFSSGVMPDDVTLVGVLSACSY--TG----KVKEGREIFESMKSKYLVEP--KTEHYACMVDLLGRAGQV 380 (600)
Q Consensus 309 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~--~g----~~~~a~~~~~~~~~~~~~~p--~~~~~~~li~~~~~~g~~ 380 (600)
+++.+.+++.|.+.|++-+..+|.+....... .. ....+..+|+.|++++.+-. +-..+..|+.. +.+++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 45667788999999999888887764433322 22 35678999999999875432 33344444332 44444
Q ss_pred HH----HHHHHHhC---CCCC-CHHHHHHHHHHHHHcC-C--HHHHHHHHHHHhcc
Q 007517 381 ED----AMKLIEAM---PFEP-DAIIWGSLLGACRTHM-K--LDLAEVAAKKLLQL 425 (600)
Q Consensus 381 ~~----A~~~~~~m---~~~p-~~~~~~~ll~~~~~~g-~--~~~a~~~~~~~~~~ 425 (600)
++ ++..++.+ ++.. |..-+.+-+-++.... + ..++..+++.+.+.
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~ 211 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKN 211 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHc
Confidence 33 33344433 4443 3333333333332222 1 23455566666553
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 64.9 bits (157), Expect = 6e-11
Identities = 74/547 (13%), Positives = 149/547 (27%), Gaps = 167/547 (30%)
Query: 34 EKNVVSWTVMLGGFIRDSRIDDARRLFDMMPEKDVVAQTNMVLGYCQDG-RVDEG---RE 89
K+++S + + + RLF + K Q MV + ++ R++
Sbjct: 42 PKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSK----QEEMVQKFVEEVLRINYKFLMSP 97
Query: 90 IFDEM--PKKNVISWTTMISGYVNNNRI----DVAR---------KLFEVMPEKNEVSWT 134
I E P + N+N++ +V+R L E+ P KN +
Sbjct: 98 IKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVL--- 154
Query: 135 AMLMGYTQCGRIQDAWELFKAMPMKSVVASNSMILGLGQNGEVQKARV--VFDQMREKDD 192
+ G G K+ VA + + +VQ +F
Sbjct: 155 --IDGVLGSG--------------KTWVALDVC-----LSYKVQCKMDFKIF-------- 185
Query: 193 ATWSGMIKV--YERKGYELEVI-DLFTLMQKEGV-RVNFPSLISVL--SVCASLASLDHG 246
W + + LE++ L + R + S I + S+ A L L
Sbjct: 186 --W---LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKS 240
Query: 247 RQ-VHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFASKDIVMWNSIISGYAQ 305
+ + LV +V A + C L+ ++ + + + +
Sbjct: 241 KPYENCLLV---LL-NVQNAKAWNAFNLSCKILL---------TTRFKQVTDFLSAATTT 287
Query: 306 YGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTE 365
+ + E + + KYL +
Sbjct: 288 HISLDHHSMTLTP--------------------------DEVKSLL----LKYLDCRPQD 317
Query: 366 --HYACMVDLLGRAGQVEDAMKLIEAMPFEPDAIIWGSLLGACRTHMKLD-LAEVAAKKL 422
+ + +I W + H+ D L + L
Sbjct: 318 LPREVLTTNPR--------RLSIIAES-IRDGLATWDNWK-----HVNCDKLTTIIESSL 363
Query: 423 LQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMRKRNVIKPPG--CS-WIEVEKKVHMF 479
LEP + F ++ + ++ P W +V K M
Sbjct: 364 NVLEPAE------------YRKMFDRLSVFPPSA---HI--PTILLSLIWFDVIKSDVM- 405
Query: 480 TGRDCVSHPEHPMIMRMLEKIGGLLREAGYCPDSSFVLHDVDEEEKVHS--LRYHSEKLA 537
+++ L K + ++ +S+ + + E KV +
Sbjct: 406 ------------VVVNKLHKYSLVEKQP---KESTISIPSIYLELKVKLENEYALHRSIV 450
Query: 538 VAYGLVK 544
Y + K
Sbjct: 451 DHYNIPK 457
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 52.4 bits (125), Expect = 1e-07
Identities = 31/221 (14%), Positives = 65/221 (29%), Gaps = 36/221 (16%)
Query: 282 KLIFDNFASKDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYT 341
+ + + + S Y + +L+ H+ S M V
Sbjct: 90 REMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQGDSLECMAMTV------QILLKL 143
Query: 342 GKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM--PFEPDAIIW 399
++ R+ + M+ + T+ V L +++DA + + M P ++
Sbjct: 144 DRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLL 203
Query: 400 GSLLGACRTHM-KLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMRK 458
+ AC + + AE ++ L + + I L + G+ +V
Sbjct: 204 -NGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTN------- 255
Query: 459 RNVIKPPGCSWIEVEKKVHMFTGRDCVSHPEHPMIMRMLEK 499
++ K H HP I K
Sbjct: 256 ---------RYLSQLKDA----------HRSHPFIKEYRAK 277
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 50.9 bits (121), Expect = 4e-07
Identities = 37/228 (16%), Positives = 76/228 (33%), Gaps = 18/228 (7%)
Query: 2 PERNVVSWTAMVRGYVEEGMITEAGTLFWQMPEKNVVSWTVMLGGFIRDSRIDDA----- 56
PER+V + R Y+ + + + + SR D
Sbjct: 30 PERDVERDVFLYRAYLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLASHSRRDAIVAELD 89
Query: 57 RRLFDMMPEKDVVAQTNMVLGYCQDGRVDEGREIFDEMPKKNVISWTTMISGYVNNNRID 116
R + + + Y D D + ++ + + +R+D
Sbjct: 90 REMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQG--DSLECMAMTVQILLKLDRLD 147
Query: 117 VARKLFEVMPEKNEVSWTAMLMG-----YTQCGRIQDAWELFKAMPMK---SVVASNSMI 168
+ARK + M +++E + L ++QDA+ +F+ M K +++ N
Sbjct: 148 LARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQA 207
Query: 169 LGLGQNGEVQKARVVFDQMREKD---DATWSGMIKVYERKGYELEVID 213
G + A V + +KD T ++ + + G EV +
Sbjct: 208 ACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTN 255
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 52.5 bits (124), Expect = 3e-07
Identities = 26/192 (13%), Positives = 60/192 (31%), Gaps = 7/192 (3%)
Query: 213 DLFTLMQKEGVRVNFPSLISVLSVCASLASLDHGRQVHAQLVRCQFDVDVYVASVLITMY 272
L ++ L +L SLD + Q + Q
Sbjct: 78 CLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCC 137
Query: 273 IKCGELVKGKLIFDNFASK-------DIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVM 325
+ +L + + + M+N+++ G+A+ G ++ + V + +G+
Sbjct: 138 LLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLT 197
Query: 326 PDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMK 385
PD ++ L + E S+ ++ + A ++ RA ++ K
Sbjct: 198 PDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHK 257
Query: 386 LIEAMPFEPDAI 397
+ P
Sbjct: 258 VKPTFSLPPQLP 269
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 46.7 bits (109), Expect = 2e-05
Identities = 16/132 (12%), Positives = 45/132 (34%), Gaps = 16/132 (12%)
Query: 111 NNNRIDVARKLFEVMPEK----NEVSWTAMLMGYTQCGRIQDAWELFKAM-------PMK 159
+DV + + + A ++ A L +
Sbjct: 104 GKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLL 163
Query: 160 SVVASNSMILGLGQNGEVQKARVVFDQMREK----DDATWSGMIKVYERKGYELEVI-DL 214
++ N+++LG + G ++ V +++ D +++ ++ R+ + I
Sbjct: 164 TLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERC 223
Query: 215 FTLMQKEGVRVN 226
M +EG+++
Sbjct: 224 LEQMSQEGLKLQ 235
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 42.9 bits (99), Expect = 3e-04
Identities = 11/134 (8%), Positives = 39/134 (29%), Gaps = 13/134 (9%)
Query: 36 NVVSWTVMLGGFIRDSRIDDARRLFDMMPEK-------DVVAQTNMVLGYCQDGRVDEGR 88
+ ++ A L + + + ++LG+ + G E
Sbjct: 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELV 185
Query: 89 EIFDEMPKK----NVISWTTMISGYVNNNRIDVARKLFEVMPEKNEVSWTAMLMGYTQCG 144
+ + +++S+ + ++ A + + + ++ +
Sbjct: 186 YVLFMVKDAGLTPDLLSYAAALQCMGRQDQD--AGTIERCLEQMSQEGLKLQALFTAVLL 243
Query: 145 RIQDAWELFKAMPM 158
+D + KA+
Sbjct: 244 SEEDRATVLKAVHK 257
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 48.4 bits (116), Expect = 3e-06
Identities = 14/106 (13%), Positives = 34/106 (32%), Gaps = 10/106 (9%)
Query: 364 TEHYACMVDLLGRAGQVEDAM----KLIEAMPFEPDAIIWGSLLGACRTHM-KLDLAEVA 418
+ + + + ++E PF + + + K +
Sbjct: 22 LDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCL---PVHIGTLVELNKANELFYL 78
Query: 419 AKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMRKRNVIKP 464
+ KL+ L P N + + Y G ++ A R+ + K ++
Sbjct: 79 SHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHA--RRYLSKATTLEK 122
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 41.5 bits (98), Expect = 5e-04
Identities = 21/147 (14%), Positives = 47/147 (31%), Gaps = 21/147 (14%)
Query: 326 PDDVTL---VGVLSACSYTGKVKEGREIFE---SMKSKYLVEPKTEHYACMVDLLGRA-- 377
P+D + VGV G+ K + F E + + +++ LG
Sbjct: 190 PEDPFVMHEVGV--VAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCR 247
Query: 378 --GQVEDAM----KLIEAMPFEPDAIIWGSLLGACRTHM-KLDLAEVAAKKLLQLEPKNA 430
+ +A+ + + +P S +G + M + A L L +
Sbjct: 248 KLKKYAEALDYHRQALVLIPQNASTY---SAIGYIHSLMGNFENAVDYFHTALGLRRDDT 304
Query: 431 GPYILLSNIYASQGRFHDVAELRKNMR 457
+L + + A + +++
Sbjct: 305 FSVTMLGHCIEMYIGDSE-AYIGADIK 330
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 46.5 bits (111), Expect = 2e-05
Identities = 13/105 (12%), Positives = 32/105 (30%), Gaps = 3/105 (2%)
Query: 353 SMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIE-AMPFEPDAIIWGSLLGACRTHM- 410
+S+ + + + A+ ++ + L C
Sbjct: 109 EAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEG 168
Query: 411 KLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHD-VAELRK 454
+ A K +L+ N + +S +Y G ++E+R+
Sbjct: 169 EPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRE 213
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 43.7 bits (103), Expect = 1e-04
Identities = 10/98 (10%), Positives = 27/98 (27%), Gaps = 8/98 (8%)
Query: 366 HYACMVDLLGRAGQVEDAMKLIEAMPFEPD-AIIWGSLLGACRTHMKLDLAEVAAKKLLQ 424
Y ++ ++ A + ++ + + + K+L+
Sbjct: 274 LYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILE 333
Query: 425 LEPKNAGPYILLSNIYASQGR-------FHDVAELRKN 455
++P N Y L G +D+ +
Sbjct: 334 IDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPE 371
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 43.7 bits (103), Expect = 1e-04
Identities = 12/86 (13%), Positives = 24/86 (27%), Gaps = 3/86 (3%)
Query: 372 DLLGRAGQVEDAMKLIE-AMPFEPD-AIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKN 429
D G ++ + P L T + A V ++ P++
Sbjct: 31 DAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEH 90
Query: 430 AGPYILLSNIYASQGRFHD-VAELRK 454
G + L + G+ A +
Sbjct: 91 PGIALWLGHALEDAGQAEAAAAAYTR 116
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 43.5 bits (103), Expect = 2e-04
Identities = 13/84 (15%), Positives = 28/84 (33%), Gaps = 3/84 (3%)
Query: 374 LGRAGQVEDAMKLIE-AMPFEPDAIIWGSLLGACRTHM-KLDLAEVAAKKLLQLEPKNAG 431
+G A+ ++ + L C + A K +L+ N
Sbjct: 153 AFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTE 212
Query: 432 PYILLSNIYASQGRFHD-VAELRK 454
+ +S +Y G ++E+R+
Sbjct: 213 AFYKISTLYYQLGDHELSLSEVRE 236
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 42.8 bits (101), Expect = 3e-04
Identities = 25/116 (21%), Positives = 42/116 (36%), Gaps = 14/116 (12%)
Query: 342 GKVKEGREIFESMKSKYLVEPKTEHYACMVDLLG----RAGQVEDAM----KLIEAMPFE 393
G G + K L + + YA + G A +A+ IE P E
Sbjct: 1 GSHMNGEPDIA--QLKGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNE 58
Query: 394 PDAIIWGSLLGACRTHM-KLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHD 448
P + S + AC L+ K L+++P ++ + ++ S G F D
Sbjct: 59 PVF--Y-SNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTD 111
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 39.7 bits (93), Expect = 3e-04
Identities = 19/88 (21%), Positives = 35/88 (39%), Gaps = 9/88 (10%)
Query: 373 LLGRAGQVEDAMKLIEA----MPFEPDAIIWGSLLGACRTHM-KLDLAEVAAKKLLQLEP 427
+ + + +A EA P +A W LG + K LA +A L+P
Sbjct: 26 SMLKLANLAEAALAFEAVCQKEPEREEA--W-RSLGLTQAENEKDGLAIIALNHARMLDP 82
Query: 428 KNAGPYILLSNIYASQGRFHD-VAELRK 454
K+ + L+ + ++ + +A LR
Sbjct: 83 KDIAVHAALAVSHTNEHNANAALASLRA 110
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 41.3 bits (97), Expect = 4e-04
Identities = 15/104 (14%), Positives = 30/104 (28%), Gaps = 2/104 (1%)
Query: 349 EIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIE-AMPFEPDAIIWGSLLGACR 407
E++ E ++ + + + A + + P+ + +
Sbjct: 39 EMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQ 98
Query: 408 THM-KLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVA 450
+ A +K+LQLE N I L N Y
Sbjct: 99 VCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKK 142
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 41.7 bits (98), Expect = 5e-04
Identities = 18/77 (23%), Positives = 34/77 (44%), Gaps = 3/77 (3%)
Query: 374 LGRAGQVEDAMKLI-EAMPFEPDAIIWGSLLGACRTHM-KLDLAEVAAKKLLQLEPKNAG 431
R + +DA+K A+ + D + + S L AC + L + K L+L+P +
Sbjct: 16 FFRNKKYDDAIKYYNWALELKEDPVFY-SNLSACYVSVGDLKKVVEMSTKALELKPDYSK 74
Query: 432 PYILLSNIYASQGRFHD 448
+ ++ G+F D
Sbjct: 75 VLLRRASANEGLGKFAD 91
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225 | Back alignment and structure |
|---|
Score = 40.7 bits (96), Expect = 6e-04
Identities = 19/98 (19%), Positives = 33/98 (33%), Gaps = 9/98 (9%)
Query: 373 LLGRAGQVEDAMKLIE---AMPFEPD-AIIWGSLLGACRTHM-KLDLAEVAAKKLLQLEP 427
L GR + ++M + A P P I + G C + LAE K+ L +P
Sbjct: 86 LCGRLNRPAESMAYFDKALADPTYPTPYIANLNK-GICSAKQGQFGLAEAYLKRSLAAQP 144
Query: 428 KNAGPYILLSNIYASQGRFHDVAELRKNMRKRNVIKPP 465
+ + L+ G+ + +K
Sbjct: 145 QFPPAFKELARTKMLAGQL---GDADYYFKKYQSRVEV 179
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 41.7 bits (97), Expect = 7e-04
Identities = 15/89 (16%), Positives = 35/89 (39%), Gaps = 6/89 (6%)
Query: 366 HYACMVDLLGRA----GQVEDAMKLI-EAMPFEPD-AIIWGSLLGACRTHMKLDLAEVAA 419
+A L G++++A+ EA+ P A + ++ + + A
Sbjct: 41 EFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCY 100
Query: 420 KKLLQLEPKNAGPYILLSNIYASQGRFHD 448
+ +Q+ P A + L++I+ G +
Sbjct: 101 TRAIQINPAFADAHSNLASIHKDSGNIPE 129
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 41.0 bits (97), Expect = 7e-04
Identities = 14/87 (16%), Positives = 31/87 (35%), Gaps = 7/87 (8%)
Query: 373 LLGRAGQVEDAM----KLIEAMPFEPDAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPK 428
+ + +++ + I+ P +A + +L + +L A + L+L+P
Sbjct: 42 IHFQCRRLDRSAHFSTLAIKQNPLLAEA--YSNLGNVYKERGQLQEAIEHYRHALRLKPD 99
Query: 429 NAGPYILLSNIYASQGRFHD-VAELRK 454
YI L+ + G V
Sbjct: 100 FIDGYINLAAALVAAGDMEGAVQAYVS 126
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 600 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.96 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.96 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.95 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.95 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.91 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.91 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.91 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.9 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.89 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.84 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.84 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.83 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.81 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.81 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.78 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.78 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.77 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.77 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.77 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.77 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.76 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.75 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.75 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.74 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.73 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.73 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.72 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.72 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.71 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.71 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.67 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.66 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.65 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.64 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.6 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.6 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.58 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.56 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.55 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.55 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.55 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.5 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.5 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.5 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.49 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.49 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.48 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.48 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.47 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.47 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.47 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.47 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.45 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.43 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.42 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.42 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.42 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.41 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.41 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.41 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.4 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.38 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.37 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.33 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.32 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.3 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.3 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.29 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.29 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.27 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.27 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.24 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.23 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.22 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.22 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.22 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.2 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.19 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.18 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.15 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.13 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.09 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.07 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.03 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.03 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.01 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.97 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.96 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.95 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 98.95 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.94 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.91 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.9 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.87 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.85 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.84 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.84 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.82 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.8 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.78 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.78 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.77 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.74 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.74 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.72 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.7 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.7 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.69 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.67 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.67 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.64 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.64 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.63 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.62 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.62 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.62 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.62 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.6 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.58 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.57 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.57 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.56 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.55 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.54 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.53 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.52 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.52 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.5 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.5 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.5 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.48 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.43 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.41 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.4 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.37 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.37 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.36 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.35 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.35 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.34 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.34 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.34 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.33 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.33 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.32 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.31 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.3 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.3 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.3 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.29 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.29 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.29 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.28 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.25 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.25 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.25 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.23 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.22 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.22 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.21 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.2 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.2 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.2 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.14 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.13 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.1 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.1 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.09 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.09 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.07 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.06 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.06 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.05 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.04 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.01 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.0 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.0 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.0 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.96 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 97.96 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.94 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 97.92 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.91 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 97.89 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.87 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.86 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.83 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.83 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.82 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.81 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 97.8 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.8 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 97.79 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.78 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.74 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.61 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.58 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.56 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.53 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 97.41 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.4 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.33 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.29 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.22 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.14 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.14 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.1 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.06 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 97.0 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.99 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.98 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.93 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.89 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 96.86 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.81 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 96.78 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 96.7 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.63 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 96.5 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.44 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.3 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 96.19 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 96.09 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 95.93 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.85 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 95.83 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 95.56 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.27 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 95.21 | |
| 3ltj_A | 201 | Alpharep-4; protein engineering, heat-like repeat, | 94.61 | |
| 3ltm_A | 211 | Alpha-REP4; protein engineering, heat-like repeat, | 94.5 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 94.5 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 94.42 | |
| 3ltm_A | 211 | Alpha-REP4; protein engineering, heat-like repeat, | 94.07 | |
| 3ltj_A | 201 | Alpharep-4; protein engineering, heat-like repeat, | 93.97 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 93.41 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 92.8 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 92.71 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 91.54 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 90.63 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 90.44 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 89.03 | |
| 2uwj_G | 115 | Type III export protein PSCG; virulence, chaperone | 86.66 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 86.44 | |
| 2p58_C | 116 | Putative type III secretion protein YSCG; type III | 86.18 | |
| 1oyz_A | 280 | Hypothetical protein YIBA; structural genomics, PS | 85.09 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 84.38 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 83.82 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 83.8 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 83.01 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 82.62 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 82.29 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 82.12 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 81.36 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 81.11 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-42 Score=369.37 Aligned_cols=453 Identities=9% Similarity=-0.011 Sum_probs=393.8
Q ss_pred CCCCcchHHHHHHHHHhCCChHHHHHHHhhCC--CCCcchHHHHHHHHHcCCCHHHHHHHHccCC--CCCcchHHHHHHH
Q 007517 2 PERNVVSWTAMVRGYVEEGMITEAGTLFWQMP--EKNVVSWTVMLGGFIRDSRIDDARRLFDMMP--EKDVVAQTNMVLG 77 (600)
Q Consensus 2 ~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~li~~ 77 (600)
|.+++..|+.++..|.+.|++++|+.+|++|. .|+..++..++.+|.+.|++++|..+|+.+. .++..+++.++.+
T Consensus 80 ~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~ 159 (597)
T 2xpi_A 80 SLSREDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFC 159 (597)
T ss_dssp --CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGGGTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHccCchHHHHHHHHHHhhCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhccccchhHHHHHHHH
Confidence 45788899999999999999999999999987 5788899999999999999999999999994 6789999999999
Q ss_pred HHhcCChHHHHHHHhhCCCC-------------------CcccHHHHHHHHHhCCChHHHHHHHhhcCC--CCcc-hHHH
Q 007517 78 YCQDGRVDEGREIFDEMPKK-------------------NVISWTTMISGYVNNNRIDVARKLFEVMPE--KNEV-SWTA 135 (600)
Q Consensus 78 ~~~~g~~~~A~~~~~~m~~~-------------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--p~~~-t~~~ 135 (600)
|.+.|++++|.++|+++... ++.+|+.++.+|.+.|++++|+++|++|.+ |+.. .+..
T Consensus 160 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 239 (597)
T 2xpi_A 160 LVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQ 239 (597)
T ss_dssp HHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHH
Confidence 99999999999999965433 378999999999999999999999999987 6544 4444
Q ss_pred HHHHHhcCCChHHHHH--H-HhhCCCC----CccchhHHHHHHHhcCCHHHHHHHHHhccc--CChhhHHHHHHHHHHcC
Q 007517 136 MLMGYTQCGRIQDAWE--L-FKAMPMK----SVVASNSMILGLGQNGEVQKARVVFDQMRE--KDDATWSGMIKVYERKG 206 (600)
Q Consensus 136 ll~~~~~~g~~~~a~~--~-~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g 206 (600)
+...+...+..+.+.. + +..+... ...+++.++.+|.+.|++++|.++|+++.+ ++..+|+.++.+|.+.|
T Consensus 240 l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g 319 (597)
T 2xpi_A 240 LVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRS 319 (597)
T ss_dssp HHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTT
T ss_pred HHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhc
Confidence 5444433332222111 0 1112222 223456668889999999999999999987 79999999999999999
Q ss_pred ChHHHHHHHHHHHHcCCccCchhHhhHHHHHhhhcchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHhhhh
Q 007517 207 YELEVIDLFTLMQKEGVRVNFPSLISVLSVCASLASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFD 286 (600)
Q Consensus 207 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~ 286 (600)
++++|+++|+++.+.+ +.+..++..++.++...|+.++|..++..+.+.. +.+..+++.++.+|.++|++++|.++|+
T Consensus 320 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 397 (597)
T 2xpi_A 320 RFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFS 397 (597)
T ss_dssp CHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 9999999999999875 3478889999999999999999999999999764 6678899999999999999999999999
Q ss_pred hcC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCC
Q 007517 287 NFA---SKDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPK 363 (600)
Q Consensus 287 ~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~ 363 (600)
++. ..+..+|+.++.+|.+.|++++|+++|++|.+.+ +++..++..+..+|.+.|++++|.++|+++.+.. +.+
T Consensus 398 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~ 474 (597)
T 2xpi_A 398 KSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF--QYD 474 (597)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCC
T ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCC
Confidence 875 3578899999999999999999999999999863 4577899999999999999999999999998753 457
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHhC-------CCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHH
Q 007517 364 TEHYACMVDLLGRAGQVEDAMKLIEAM-------PFEPD--AIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYI 434 (600)
Q Consensus 364 ~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 434 (600)
..+|+.++.+|.+.|++++|.++|+++ +..|+ ..+|..++.+|.+.|++++|...++++++.+|+++.+|.
T Consensus 475 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 554 (597)
T 2xpi_A 475 PLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHT 554 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHH
T ss_pred hHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHH
Confidence 899999999999999999999999988 45787 789999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHhC
Q 007517 435 LLSNIYASQGRFHDVAELRKNMRKR 459 (600)
Q Consensus 435 ~l~~~~~~~g~~~~a~~~~~~m~~~ 459 (600)
.++.+|...|++++|.++++++.+.
T Consensus 555 ~l~~~~~~~g~~~~A~~~~~~~l~~ 579 (597)
T 2xpi_A 555 AIALVYLHKKIPGLAITHLHESLAI 579 (597)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 9999999999999999999999874
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-38 Score=338.56 Aligned_cols=437 Identities=9% Similarity=-0.016 Sum_probs=376.4
Q ss_pred CCCcchHHHHHHHHHhCCChHHHHHHHhhCC--CCCcchHHHHHHHHHcCCCHHHHHHHHccCCCC--------------
Q 007517 3 ERNVVSWTAMVRGYVEEGMITEAGTLFWQMP--EKNVVSWTVMLGGFIRDSRIDDARRLFDMMPEK-------------- 66 (600)
Q Consensus 3 ~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~-------------- 66 (600)
.||..+|+.++..|.+.|++++|+.+|+.+. ++++.+++.++.+|.++|++++|.++|+++...
T Consensus 114 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 193 (597)
T 2xpi_A 114 TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQD 193 (597)
T ss_dssp HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGGGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCC
T ss_pred CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccc
Confidence 3677899999999999999999999999995 788999999999999999999999999965543
Q ss_pred -----CcchHHHHHHHHHhcCChHHHHHHHhhCCCC---CcccHHHHHHHHHhCCChHHHHHH---HhhcCC----CCcc
Q 007517 67 -----DVVAQTNMVLGYCQDGRVDEGREIFDEMPKK---NVISWTTMISGYVNNNRIDVARKL---FEVMPE----KNEV 131 (600)
Q Consensus 67 -----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~---~~~m~~----p~~~ 131 (600)
+..+|+.++.+|.+.|++++|.++|++|.+. +..+|..+...+...+..+.+... +..+.. ++..
T Consensus 194 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 273 (597)
T 2xpi_A 194 GGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRS 273 (597)
T ss_dssp SSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHH
T ss_pred cccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHH
Confidence 3789999999999999999999999999753 334555555544443332222111 222222 3345
Q ss_pred hHHHHHHHHhcCCChHHHHHHHhhCC--CCCccchhHHHHHHHhcCCHHHHHHHHHhccc---CChhhHHHHHHHHHHcC
Q 007517 132 SWTAMLMGYTQCGRIQDAWELFKAMP--MKSVVASNSMILGLGQNGEVQKARVVFDQMRE---KDDATWSGMIKVYERKG 206 (600)
Q Consensus 132 t~~~ll~~~~~~g~~~~a~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g 206 (600)
+|+.++..|.+.|++++|.++|+.+. +++..+++.++.+|.+.|++++|.++|+++.+ .+..+|+.++.+|.+.|
T Consensus 274 ~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 353 (597)
T 2xpi_A 274 LYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESG 353 (597)
T ss_dssp HHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhC
Confidence 67777888999999999999999998 48889999999999999999999999999873 37889999999999999
Q ss_pred ChHHHHHHHHHHHHcCCccCchhHhhHHHHHhhhcchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHhhhh
Q 007517 207 YELEVIDLFTLMQKEGVRVNFPSLISVLSVCASLASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFD 286 (600)
Q Consensus 207 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~ 286 (600)
++++|..+|+++.+.. +.+..++..+...+.+.|++++|.++++.+.+.. +.+..+++.++.+|.+.|++++|.++|+
T Consensus 354 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 431 (597)
T 2xpi_A 354 EKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYT 431 (597)
T ss_dssp CHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999999998653 4567889999999999999999999999999865 4568899999999999999999999999
Q ss_pred hcCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhcC---CC
Q 007517 287 NFAS---KDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKY---LV 360 (600)
Q Consensus 287 ~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~ 360 (600)
++.. .+..+|+.++.+|.+.|++++|+++|++|.+.. +.+..+|..+...+.+.|++++|.++|+++.+.. +.
T Consensus 432 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 510 (597)
T 2xpi_A 432 TAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQS 510 (597)
T ss_dssp HHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhcccc
Confidence 8753 478999999999999999999999999998753 4467899999999999999999999999987642 45
Q ss_pred CCC--hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHH
Q 007517 361 EPK--TEHYACMVDLLGRAGQVEDAMKLIEAM-PFEP-DAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILL 436 (600)
Q Consensus 361 ~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 436 (600)
.|+ ..+|..++.+|.+.|++++|.+.++++ ...| +..+|..+..+|...|++++|...++++++++|+++..+..+
T Consensus 511 ~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l 590 (597)
T 2xpi_A 511 NEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLL 590 (597)
T ss_dssp CSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHH
Confidence 677 789999999999999999999999987 3334 789999999999999999999999999999999999999999
Q ss_pred HHHHHh
Q 007517 437 SNIYAS 442 (600)
Q Consensus 437 ~~~~~~ 442 (600)
+++|..
T Consensus 591 ~~~~~~ 596 (597)
T 2xpi_A 591 KRALEE 596 (597)
T ss_dssp HHTTC-
T ss_pred HHHHhc
Confidence 988753
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.96 E-value=2.6e-28 Score=253.25 Aligned_cols=198 Identities=13% Similarity=0.213 Sum_probs=170.3
Q ss_pred HHHHHHHhcccC-----ChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCchhHhhHHHHHhhhc---------chH
Q 007517 179 KARVVFDQMREK-----DDATWSGMIKVYERKGYELEVIDLFTLMQKEGVRVNFPSLISVLSVCASLA---------SLD 244 (600)
Q Consensus 179 ~A~~~f~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~---------~~~ 244 (600)
.+..+++++.++ ....++.+|.+|++.|+.++|+++|++|.+.|++||.+||+++|.+|+..+ .++
T Consensus 8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~ 87 (501)
T 4g26_A 8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLS 87 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHH
T ss_pred hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHH
Confidence 344455555533 234588899999999999999999999999999999999999999998654 478
Q ss_pred HHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHhhhhhcCC----CCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 007517 245 HGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFAS----KDIVMWNSIISGYAQYGLGEKSLKVFHEMF 320 (600)
Q Consensus 245 ~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 320 (600)
.|.++|+.|.+.|+.||..+|++||.+|++.|++++|.++|++|.. ||..+||+||.+|++.|+.++|.++|++|.
T Consensus 88 ~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~ 167 (501)
T 4g26_A 88 RGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMV 167 (501)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999864 799999999999999999999999999999
Q ss_pred HCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhc
Q 007517 321 SSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRA 377 (600)
Q Consensus 321 ~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 377 (600)
+.|+.||..||++||.+|++.|++++|.++|++|.+. ++.|+..+|+.+++.+...
T Consensus 168 ~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~-g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 168 ESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDL-VRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TSSBCHHHHHHHHHHHHSH
T ss_pred hcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHh-CCCcCHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999886 8899999999999988753
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=1.9e-26 Score=234.45 Aligned_cols=337 Identities=12% Similarity=0.095 Sum_probs=212.2
Q ss_pred HHHHHHHHHhCCChHHHHHHHhhcCC--C-CcchHHHHHHHHhcCCChHHHHHHHhhCC---CCCccchhHHHHHHHhcC
Q 007517 102 WTTMISGYVNNNRIDVARKLFEVMPE--K-NEVSWTAMLMGYTQCGRIQDAWELFKAMP---MKSVVASNSMILGLGQNG 175 (600)
Q Consensus 102 ~~~li~~~~~~g~~~~A~~~~~~m~~--p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g 175 (600)
+..+...+.+.|++++|...++...+ | +..++..+..++...|++++|...|+.+. +.+...+..+...|.+.|
T Consensus 36 ~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g 115 (388)
T 1w3b_A 36 LLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAG 115 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcC
Confidence 33334444444444444444444433 2 23344444444444444444444444443 222334444555555555
Q ss_pred CHHHHHHHHHhccc--C-ChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCchhHhhHHHHHhhhcchHHHHHHHHH
Q 007517 176 EVQKARVVFDQMRE--K-DDATWSGMIKVYERKGYELEVIDLFTLMQKEGVRVNFPSLISVLSVCASLASLDHGRQVHAQ 252 (600)
Q Consensus 176 ~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 252 (600)
++++|.+.|+++.+ | +...+..+...+...|++++|.+.|+++.... +-+..++..+...+...|++++|...++.
T Consensus 116 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 194 (388)
T 1w3b_A 116 DMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEK 194 (388)
T ss_dssp CSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 55555555554432 2 23344445555555555555555555555432 11234455555555555555555555555
Q ss_pred HHHcCCCCchhhHHHHHHHHHHcCCHHHHHhhhhhcC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CH
Q 007517 253 LVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFA---SKDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMP-DD 328 (600)
Q Consensus 253 ~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~ 328 (600)
+.+.. +.+...+..+...|...|++++|...|++.. ..+..+|..+...|.+.|++++|++.|+++.+. .| +.
T Consensus 195 al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~ 271 (388)
T 1w3b_A 195 AVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL--QPHFP 271 (388)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCH
T ss_pred HHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCH
Confidence 55543 3345566667777777777777777776543 235677888888888888888888888888775 34 35
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 007517 329 VTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM-PFEP-DAIIWGSLLGAC 406 (600)
Q Consensus 329 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~ 406 (600)
.++..+..++...|++++|.+.|+++.+. .+++...+..+...|.+.|++++|.+.++++ ...| +..+|..+...+
T Consensus 272 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 349 (388)
T 1w3b_A 272 DAYCNLANALKEKGSVAEAEDCYNTALRL--CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVL 349 (388)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 57777778888888888888888888764 2556778888888888888888888888877 3344 467788888888
Q ss_pred HHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcC
Q 007517 407 RTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQG 444 (600)
Q Consensus 407 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 444 (600)
...|++++|...++++++++|+++..|..++.++...|
T Consensus 350 ~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 350 QQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTC
T ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHcc
Confidence 88888888888888888888888888888888777665
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.95 E-value=2.6e-25 Score=226.03 Aligned_cols=348 Identities=11% Similarity=0.061 Sum_probs=305.1
Q ss_pred HHHHHHhCCChHHHHHHHhhcCC--CCc-chHHHHHHHHhcCCChHHHHHHHhhCC---CCCccchhHHHHHHHhcCCHH
Q 007517 105 MISGYVNNNRIDVARKLFEVMPE--KNE-VSWTAMLMGYTQCGRIQDAWELFKAMP---MKSVVASNSMILGLGQNGEVQ 178 (600)
Q Consensus 105 li~~~~~~g~~~~A~~~~~~m~~--p~~-~t~~~ll~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~ 178 (600)
+...+.+.|++++|++.+..+.+ |+. ..+..+...+...|++++|...++... +.+..++..+...|.+.|+++
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~ 84 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQ 84 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHH
Confidence 34567788999999999988876 664 455667777889999999999998887 566778999999999999999
Q ss_pred HHHHHHHhccc--C-ChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCch-hHhhHHHHHhhhcchHHHHHHHHHHH
Q 007517 179 KARVVFDQMRE--K-DDATWSGMIKVYERKGYELEVIDLFTLMQKEGVRVNFP-SLISVLSVCASLASLDHGRQVHAQLV 254 (600)
Q Consensus 179 ~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~ 254 (600)
+|...|+++.. | +..+|..+..++.+.|++++|+..|+++.+. .|+.. .+..+...+...|++++|...+..+.
T Consensus 85 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 162 (388)
T 1w3b_A 85 EAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY--NPDLYCVRSDLGNLLKALGRLEEAKACYLKAI 162 (388)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--CTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 99999999864 3 5668999999999999999999999999885 45544 55667778888999999999999999
Q ss_pred HcCCCCchhhHHHHHHHHHHcCCHHHHHhhhhhcCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHH
Q 007517 255 RCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFAS---KDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPD-DVT 330 (600)
Q Consensus 255 ~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t 330 (600)
+.. +.+..++..+...|.+.|++++|...|+++.. .+...|..+...+...|++++|+..|++.... .|+ ..+
T Consensus 163 ~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~ 239 (388)
T 1w3b_A 163 ETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSL--SPNHAVV 239 (388)
T ss_dssp HHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH--CTTCHHH
T ss_pred HhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcCCHHH
Confidence 875 55678899999999999999999999998754 46788999999999999999999999999874 454 678
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHH
Q 007517 331 LVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM--PFEPDAIIWGSLLGACRT 408 (600)
Q Consensus 331 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~ 408 (600)
+..+..++...|++++|.+.|+.+.+.. +.+...|..++..|.+.|++++|.+.++++ ..+++..+|..+...+..
T Consensus 240 ~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 317 (388)
T 1w3b_A 240 HGNLACVYYEQGLIDLAIDTYRRAIELQ--PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKRE 317 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTC--SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHH
Confidence 8889999999999999999999998742 345789999999999999999999999988 224578899999999999
Q ss_pred cCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007517 409 HMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMRKR 459 (600)
Q Consensus 409 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 459 (600)
.|++++|...++++++..|+++..+..++.+|...|++++|.+.++++.+.
T Consensus 318 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 368 (388)
T 1w3b_A 318 QGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp TTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999763
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.95 E-value=5.6e-27 Score=243.18 Aligned_cols=200 Identities=13% Similarity=0.122 Sum_probs=171.3
Q ss_pred HHHHHHHHHHHHcCCccCc-hhHhhHHHHHhhhcchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCC---------H
Q 007517 209 LEVIDLFTLMQKEGVRVNF-PSLISVLSVCASLASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGE---------L 278 (600)
Q Consensus 209 ~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~---------~ 278 (600)
..+..+.+++.+.++.+.+ ..++.+|.+|++.|++++|.++|+.|.+.|+.||..+||+||.+|++.+. +
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l 86 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGL 86 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHH
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchH
Confidence 3455677788877776543 45888999999999999999999999999999999999999999998765 7
Q ss_pred HHHHhhhhhcCC----CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHh
Q 007517 279 VKGKLIFDNFAS----KDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESM 354 (600)
Q Consensus 279 ~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~ 354 (600)
+.|.++|++|.. ||.++||+||.+|++.|++++|+++|++|.+.|+.||..||+.+|.+|++.|++++|.++|++|
T Consensus 87 ~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M 166 (501)
T 4g26_A 87 SRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHM 166 (501)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHH
Confidence 889999999864 7999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC---CCCCCHHHHHHHHHHHHHc
Q 007517 355 KSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM---PFEPDAIIWGSLLGACRTH 409 (600)
Q Consensus 355 ~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~p~~~~~~~ll~~~~~~ 409 (600)
.+. |+.||..+|++|+++|++.|++++|.+++++| +..|+..||+.++..+...
T Consensus 167 ~~~-G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 167 VES-EVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHT-TCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred Hhc-CCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 985 89999999999999999999999999999999 7899999999999988754
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.2e-22 Score=214.23 Aligned_cols=386 Identities=10% Similarity=-0.009 Sum_probs=313.5
Q ss_pred chHHHHHHHHHhcCChHHHHHHHhhCCC--CCcccHHHHHHHHHhCCChHHHHHHHhhcCC--CC-cchHHHHHHHHhcC
Q 007517 69 VAQTNMVLGYCQDGRVDEGREIFDEMPK--KNVISWTTMISGYVNNNRIDVARKLFEVMPE--KN-EVSWTAMLMGYTQC 143 (600)
Q Consensus 69 ~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--p~-~~t~~~ll~~~~~~ 143 (600)
..+..+...+.+.|++++|...|+++.+ |+..+|..+..+|.+.|++++|+..|+++.+ |+ ..++..+..++...
T Consensus 7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 86 (514)
T 2gw1_A 7 LALKDKGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGL 86 (514)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHH
Confidence 4566777889999999999999999864 8888999999999999999999999999887 54 46888999999999
Q ss_pred CChHHHHHHHhhCC---CCCccchhHHHHHHHhcCCHHHHHHHHHh----------------------------------
Q 007517 144 GRIQDAWELFKAMP---MKSVVASNSMILGLGQNGEVQKARVVFDQ---------------------------------- 186 (600)
Q Consensus 144 g~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~f~~---------------------------------- 186 (600)
|++++|...|+.+. +.+......++..+.+......+.+.+..
T Consensus 87 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (514)
T 2gw1_A 87 GKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMAS 166 (514)
T ss_dssp TCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHH
T ss_pred hhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHH
Confidence 99999999999887 33444444455444443322222222211
Q ss_pred ----cc---------cC-ChhhHHHHHHHHHH---cCChHHHHHHHHHHHH-----cCCc--------cCchhHhhHHHH
Q 007517 187 ----MR---------EK-DDATWSGMIKVYER---KGYELEVIDLFTLMQK-----EGVR--------VNFPSLISVLSV 236 (600)
Q Consensus 187 ----~~---------~~-~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~-----~g~~--------p~~~t~~~ll~~ 236 (600)
.. .+ +...+......+.. .|++++|+..|+++.. .... .+..++..+...
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (514)
T 2gw1_A 167 FFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIF 246 (514)
T ss_dssp HHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHH
T ss_pred HHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHH
Confidence 00 01 13344444444554 8999999999999987 3112 234567778888
Q ss_pred HhhhcchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHhhhhhcCC---CCHHHHHHHHHHHHhcCChHHHH
Q 007517 237 CASLASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFAS---KDIVMWNSIISGYAQYGLGEKSL 313 (600)
Q Consensus 237 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~ 313 (600)
+...|+++.|...+..+.+.... ..++..+...|...|++++|...|+.+.. .+..+|..+...|...|++++|+
T Consensus 247 ~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 324 (514)
T 2gw1_A 247 KFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAG 324 (514)
T ss_dssp HHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHH
T ss_pred HHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHH
Confidence 89999999999999999987644 88889999999999999999999998754 46788999999999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC---
Q 007517 314 KVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM--- 390 (600)
Q Consensus 314 ~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--- 390 (600)
..|+++.+.. +.+...+..+...+...|++++|...++.+.+.. +.+...+..+...|.+.|++++|.+.++++
T Consensus 325 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 401 (514)
T 2gw1_A 325 KDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF--PEAPEVPNFFAEILTDKNDFDKALKQYDLAIEL 401 (514)
T ss_dssp HHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS--TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc--ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 9999998863 3345678888899999999999999999998753 446788999999999999999999999887
Q ss_pred -CCCCC----HHHHHHHHHHHHH---cCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007517 391 -PFEPD----AIIWGSLLGACRT---HMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMRKR 459 (600)
Q Consensus 391 -~~~p~----~~~~~~ll~~~~~---~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 459 (600)
+-.|+ ...|..+...+.. .|++++|...++++++..|+++..+..++.+|...|++++|.+.+++..+.
T Consensus 402 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 478 (514)
T 2gw1_A 402 ENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADL 478 (514)
T ss_dssp HHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 22233 4489999999999 999999999999999999999999999999999999999999999998864
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.91 E-value=3.8e-22 Score=206.77 Aligned_cols=328 Identities=14% Similarity=0.110 Sum_probs=227.0
Q ss_pred cccHHHHHHHHHhCCChHHHHHHHhhcCC--C-CcchHHHHHHHHhcCCChHHHHHHHhhCC---CCCccchhHHHHHHH
Q 007517 99 VISWTTMISGYVNNNRIDVARKLFEVMPE--K-NEVSWTAMLMGYTQCGRIQDAWELFKAMP---MKSVVASNSMILGLG 172 (600)
Q Consensus 99 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~--p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~li~~~~ 172 (600)
+.+|..+...+.+.|++++|+.+|+++.+ | +..++..+..++...|++++|...++.+. +.+..++..+...|.
T Consensus 26 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 105 (450)
T 2y4t_A 26 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLL 105 (450)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 34455555666666666666666665544 2 34445555555555555555555555554 333444555555666
Q ss_pred hcCCHHHHHHHHHhcccCC---h---hhHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCchhHhhHHHHHhhhcchHHH
Q 007517 173 QNGEVQKARVVFDQMREKD---D---ATWSGMIKVYERKGYELEVIDLFTLMQKEGVRVNFPSLISVLSVCASLASLDHG 246 (600)
Q Consensus 173 ~~g~~~~A~~~f~~~~~~~---~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 246 (600)
+.|++++|...|+++.+.+ . ..|..++..+...+ +......+...|++++|
T Consensus 106 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----------------------~~~~a~~~~~~~~~~~A 162 (450)
T 2y4t_A 106 KQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQR-----------------------LRSQALNAFGSGDYTAA 162 (450)
T ss_dssp HTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHTCHHHH
T ss_pred HcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHcCCHHHH
Confidence 6666666666666554322 2 34444433311111 11112234455666666
Q ss_pred HHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHhhhhhcCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 007517 247 RQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFAS---KDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSG 323 (600)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 323 (600)
...+..+.+.. +.+..++..+..+|.+.|++++|...|+++.. .+..+|..+...|...|++++|+..|+++...
T Consensus 163 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~- 240 (450)
T 2y4t_A 163 IAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKL- 240 (450)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-
Confidence 66666666543 44667778888888888888888888887653 57888999999999999999999999999864
Q ss_pred CCCCHHH-HHHH------------HHHHhccCCHHHHHHHHHHhHhcCCCCCC-----hHHHHHHHHHHhhcCCHHHHHH
Q 007517 324 VMPDDVT-LVGV------------LSACSYTGKVKEGREIFESMKSKYLVEPK-----TEHYACMVDLLGRAGQVEDAMK 385 (600)
Q Consensus 324 ~~p~~~t-~~~l------------l~a~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~ 385 (600)
.|+... +..+ ..++...|++++|..+|+.+.+. .|+ ..+|..++.+|.+.|++++|.+
T Consensus 241 -~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 316 (450)
T 2y4t_A 241 -DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSIAEYTVRSKERICHCFSKDEKPVEAIR 316 (450)
T ss_dssp -CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred -CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 555443 3333 67889999999999999999875 344 4588999999999999999999
Q ss_pred HHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHH------------HHHHhcC-----Cc
Q 007517 386 LIEAM-PFEP-DAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLS------------NIYASQG-----RF 446 (600)
Q Consensus 386 ~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~------------~~~~~~g-----~~ 446 (600)
.++++ ...| +...|..+..+|...|++++|...++++++++|+++..+..++ +.|...| ..
T Consensus 317 ~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~ 396 (450)
T 2y4t_A 317 VCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKK 396 (450)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCT
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCH
Confidence 99987 3344 6889999999999999999999999999999999999998888 4466666 44
Q ss_pred hHHHHHHHH
Q 007517 447 HDVAELRKN 455 (600)
Q Consensus 447 ~~a~~~~~~ 455 (600)
+++.+.+++
T Consensus 397 ~~~~~~y~~ 405 (450)
T 2y4t_A 397 QEIIKAYRK 405 (450)
T ss_dssp THHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555666655
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.1e-22 Score=214.60 Aligned_cols=427 Identities=9% Similarity=-0.047 Sum_probs=309.5
Q ss_pred cchHHHHHHHHHhCCChHHHHHHHhhCC--CCCcchHHHHHHHHHcCCCHHHHHHHHccCC---CCCcchHHHHHHHHHh
Q 007517 6 VVSWTAMVRGYVEEGMITEAGTLFWQMP--EKNVVSWTVMLGGFIRDSRIDDARRLFDMMP---EKDVVAQTNMVLGYCQ 80 (600)
Q Consensus 6 ~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~ 80 (600)
+..|......+.+.|++++|+..|+++. .|+..++..+..+|.+.|++++|...|+++. +.+...|..+...|.+
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 85 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEG 85 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHH
Confidence 3456777788888888888888888877 4677788888888888888888888888776 3345677778888888
Q ss_pred cCChHHHHHHHhhCCC---CCcccHHHHHHHHHhCCChHHHHHHHhhcCC----CCcchHHHHH---HHHhcCCChHHHH
Q 007517 81 DGRVDEGREIFDEMPK---KNVISWTTMISGYVNNNRIDVARKLFEVMPE----KNEVSWTAML---MGYTQCGRIQDAW 150 (600)
Q Consensus 81 ~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----p~~~t~~~ll---~~~~~~g~~~~a~ 150 (600)
.|++++|...|+++.+ ++......++..+........+.+.+..+.. |+...+..-. .............
T Consensus 86 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (514)
T 2gw1_A 86 LGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMA 165 (514)
T ss_dssp TTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHH
T ss_pred HhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHH
Confidence 8888888888877643 2334444444444433333333332322211 1111111000 0000111111111
Q ss_pred HHHhhCC----------CCCccchhHHHHHHHh---cCCHHHHHHHHHhccc----------------C-ChhhHHHHHH
Q 007517 151 ELFKAMP----------MKSVVASNSMILGLGQ---NGEVQKARVVFDQMRE----------------K-DDATWSGMIK 200 (600)
Q Consensus 151 ~~~~~~~----------~~~~~~~~~li~~~~~---~g~~~~A~~~f~~~~~----------------~-~~~~~~~li~ 200 (600)
..+.... +.+...+..+...+.. .|++++|...|+++.+ + +..+|..+..
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (514)
T 2gw1_A 166 SFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGI 245 (514)
T ss_dssp HHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHH
T ss_pred HHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHH
Confidence 1111111 1122333344444444 8999999999988765 1 3567888999
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCccCchhHhhHHHHHhhhcchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHH
Q 007517 201 VYERKGYELEVIDLFTLMQKEGVRVNFPSLISVLSVCASLASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVK 280 (600)
Q Consensus 201 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~ 280 (600)
.+...|++++|+..|+++.... |+...+..+...+...|+++.|...+..+.+.. +.+..++..+...|.+.|++++
T Consensus 246 ~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 322 (514)
T 2gw1_A 246 FKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQ 322 (514)
T ss_dssp HHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTH
T ss_pred HHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHH
Confidence 9999999999999999998865 347778888899999999999999999998875 4567788999999999999999
Q ss_pred HHhhhhhcCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhc
Q 007517 281 GKLIFDNFAS---KDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSK 357 (600)
Q Consensus 281 A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 357 (600)
|...|+.... .+...|..+...|...|++++|+..|+++.+.. +.+..++..+...+...|++++|.+.++.+.+.
T Consensus 323 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 401 (514)
T 2gw1_A 323 AGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIEL 401 (514)
T ss_dssp HHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 9999988643 467889999999999999999999999998752 334567888889999999999999999998764
Q ss_pred CCCCCC----hHHHHHHHHHHhh---cCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC
Q 007517 358 YLVEPK----TEHYACMVDLLGR---AGQVEDAMKLIEAM-PFEP-DAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPK 428 (600)
Q Consensus 358 ~~~~p~----~~~~~~li~~~~~---~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 428 (600)
..-.++ ...+..+...|.+ .|++++|.+.++++ ...| +..+|..+...+...|++++|...+++++++.|+
T Consensus 402 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 481 (514)
T 2gw1_A 402 ENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLART 481 (514)
T ss_dssp HHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS
T ss_pred hhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccc
Confidence 321222 4489999999999 99999999999987 2234 6788999999999999999999999999999999
Q ss_pred CCchHHHH
Q 007517 429 NAGPYILL 436 (600)
Q Consensus 429 ~~~~~~~l 436 (600)
++..+..+
T Consensus 482 ~~~~~~~~ 489 (514)
T 2gw1_A 482 MEEKLQAI 489 (514)
T ss_dssp HHHHHHHH
T ss_pred cHHHHHHH
Confidence 86665554
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.90 E-value=1.1e-21 Score=207.98 Aligned_cols=411 Identities=11% Similarity=0.034 Sum_probs=216.2
Q ss_pred HHHHHHHHHcCCCHHHHHHHHccCC---CCCcchHHHHHHHHHhcCChHHHHHHHhhCCC---CCcccHHHHHHHHHhCC
Q 007517 40 WTVMLGGFIRDSRIDDARRLFDMMP---EKDVVAQTNMVLGYCQDGRVDEGREIFDEMPK---KNVISWTTMISGYVNNN 113 (600)
Q Consensus 40 ~~~ll~~~~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g 113 (600)
+..+...+.+.|++++|...|+++. +.++..|..+...|.+.|++++|.+.|+++.+ .+..+|..+...+...|
T Consensus 28 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 107 (537)
T 3fp2_A 28 LKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLG 107 (537)
T ss_dssp HHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcC
Confidence 3444444444444444444444443 12334444444444444555555544444332 23344444555555555
Q ss_pred ChHHHHHHHhhcCC-CCcchHHHHHHHHhcCCChHHHHHHHhhCCC------CCccchhHHHHHHHhcCCHHHHHHHHHh
Q 007517 114 RIDVARKLFEVMPE-KNEVSWTAMLMGYTQCGRIQDAWELFKAMPM------KSVVASNSMILGLGQNGEVQKARVVFDQ 186 (600)
Q Consensus 114 ~~~~A~~~~~~m~~-p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~f~~ 186 (600)
++++|+..|+.+.. |+.. ...+..+...+....|...++.+.. .........+..|....+.+.+...+..
T Consensus 108 ~~~~A~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (537)
T 3fp2_A 108 NFTDAMFDLSVLSLNGDFD--GASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNT 185 (537)
T ss_dssp CHHHHHHHHHHHC-------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCC
T ss_pred CHHHHHHHHHHHhcCCCCC--hHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhh
Confidence 55555555542222 2211 1111122222333444444444431 1112233344444445555554444444
Q ss_pred cccCChh---hHHHHHHHHH--------HcCChHHHHHHHHHHHHcCCccCc--------hhHhhHHHHHhhhcchHHHH
Q 007517 187 MREKDDA---TWSGMIKVYE--------RKGYELEVIDLFTLMQKEGVRVNF--------PSLISVLSVCASLASLDHGR 247 (600)
Q Consensus 187 ~~~~~~~---~~~~li~~~~--------~~g~~~~A~~~~~~m~~~g~~p~~--------~t~~~ll~~~~~~~~~~~a~ 247 (600)
....+.. .+..+...+. ..|++++|+.+|+++.+. .|+. .++..+...+...|+++.|.
T Consensus 186 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~ 263 (537)
T 3fp2_A 186 SSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSA--NTVDDPLRENAALALCYTGIFHFLKNNLLDAQ 263 (537)
T ss_dssp CCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred ccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH--CCCcchhhHHHHHHHHHHHHHHHhcccHHHHH
Confidence 4333222 2222222211 113455555555555543 2221 12333444455555666666
Q ss_pred HHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHhhhhhcCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 007517 248 QVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFAS---KDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGV 324 (600)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 324 (600)
..+..+.+.. |+...+..+...|.+.|++++|...|+.+.. .+..+|..+...|...|++++|++.|+++.+..
T Consensus 264 ~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~- 340 (537)
T 3fp2_A 264 VLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN- 340 (537)
T ss_dssp HHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-
Confidence 6666665543 2355555566666666666666666665432 355667777777777777777777777776642
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC----C----CCCCH
Q 007517 325 MPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM----P----FEPDA 396 (600)
Q Consensus 325 ~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m----~----~~p~~ 396 (600)
+.+...+..+..++...|++++|.++++.+.+.. +.+...+..+...|.+.|++++|.+.++++ + .....
T Consensus 341 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 418 (537)
T 3fp2_A 341 PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF--PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGI 418 (537)
T ss_dssp TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTT
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHH
Confidence 2234566666677777777777777777776642 344667777777777777777777777765 1 11122
Q ss_pred HHHHHHHHHHHHc----------CCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007517 397 IIWGSLLGACRTH----------MKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMRKR 459 (600)
Q Consensus 397 ~~~~~ll~~~~~~----------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 459 (600)
..+..+...+... |++++|...++++++..|+++..+..++.+|...|++++|.+.+++..+.
T Consensus 419 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 419 GPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAIL 491 (537)
T ss_dssp HHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 2344444556666 77788888888888777777777777888888888888888877777654
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.89 E-value=1.1e-20 Score=195.77 Aligned_cols=295 Identities=12% Similarity=0.068 Sum_probs=225.6
Q ss_pred CccchhHHHHHHHhcCCHHHHHHHHHhccc---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCchhHhhHHHH
Q 007517 160 SVVASNSMILGLGQNGEVQKARVVFDQMRE---KDDATWSGMIKVYERKGYELEVIDLFTLMQKEGVRVNFPSLISVLSV 236 (600)
Q Consensus 160 ~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 236 (600)
+...+..+...|.+.|++++|..+|+++.+ .+..+|..+...|...|++++|+..|+++.+.+ +.+..++..+..+
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 103 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGHL 103 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHH
Confidence 344555566666666666666666666542 245566666666666666666666666666543 2234455566666
Q ss_pred HhhhcchHHHHHHHHHHHHcCCCCch---hhHHHH------------HHHHHHcCCHHHHHhhhhhcCC---CCHHHHHH
Q 007517 237 CASLASLDHGRQVHAQLVRCQFDVDV---YVASVL------------ITMYIKCGELVKGKLIFDNFAS---KDIVMWNS 298 (600)
Q Consensus 237 ~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l------------i~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~ 298 (600)
+...|++++|...+..+.+.. +.+. ..+..+ ...|.+.|++++|...|+.+.. .+...|..
T Consensus 104 ~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 182 (450)
T 2y4t_A 104 LLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELREL 182 (450)
T ss_dssp HHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHH
Confidence 666666666666666666543 2222 333333 4558899999999999998753 57889999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHH--------
Q 007517 299 IISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACM-------- 370 (600)
Q Consensus 299 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l-------- 370 (600)
+...|.+.|++++|++.|+++.+.. +.+..++..+..++...|++++|...|+.+.+.. +.+...+..+
T Consensus 183 l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~~~~~~~~~~ 259 (450)
T 2y4t_A 183 RAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD--QDHKRCFAHYKQVKKLNK 259 (450)
T ss_dssp HHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CChHHHHHHHHHHHHHHH
Confidence 9999999999999999999998752 4467789999999999999999999999998742 3345555555
Q ss_pred ----HHHHhhcCCHHHHHHHHHhC-CCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHH
Q 007517 371 ----VDLLGRAGQVEDAMKLIEAM-PFEPD-----AIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIY 440 (600)
Q Consensus 371 ----i~~~~~~g~~~~A~~~~~~m-~~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 440 (600)
+..|.+.|++++|.+.|+++ ...|+ ...|..+...+...|++++|...+++++++.|+++..+..++.+|
T Consensus 260 ~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 339 (450)
T 2y4t_A 260 LIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAY 339 (450)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 88999999999999999988 33454 447888899999999999999999999999999999999999999
Q ss_pred HhcCCchHHHHHHHHHHhC
Q 007517 441 ASQGRFHDVAELRKNMRKR 459 (600)
Q Consensus 441 ~~~g~~~~a~~~~~~m~~~ 459 (600)
...|++++|.+.++++.+.
T Consensus 340 ~~~~~~~~A~~~~~~al~~ 358 (450)
T 2y4t_A 340 LIEEMYDEAIQDYETAQEH 358 (450)
T ss_dssp HHTTCHHHHHHHHHHHHTT
T ss_pred HHhcCHHHHHHHHHHHHHh
Confidence 9999999999999999874
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.84 E-value=3.8e-18 Score=170.40 Aligned_cols=290 Identities=11% Similarity=0.049 Sum_probs=184.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHhccc---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCchhHhhHHHHHhhhcc
Q 007517 166 SMILGLGQNGEVQKARVVFDQMRE---KDDATWSGMIKVYERKGYELEVIDLFTLMQKEGVRVNFPSLISVLSVCASLAS 242 (600)
Q Consensus 166 ~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 242 (600)
.+...+.+.|++++|...|+++.+ .+..+|..+...+...|++++|+..|+++.+.. +.+...+..+...+...|+
T Consensus 8 ~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~ 86 (359)
T 3ieg_A 8 ELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLLLKQGK 86 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHHHHcCC
Confidence 333444444444444444444331 123344444444444444444444444444331 1122334444444444444
Q ss_pred hHHHHHHHHHHHHcCCC--CchhhHHH------------HHHHHHHcCCHHHHHhhhhhcCC---CCHHHHHHHHHHHHh
Q 007517 243 LDHGRQVHAQLVRCQFD--VDVYVASV------------LITMYIKCGELVKGKLIFDNFAS---KDIVMWNSIISGYAQ 305 (600)
Q Consensus 243 ~~~a~~~~~~~~~~~~~--~~~~~~~~------------li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~ 305 (600)
+++|...+..+.+.... .+...+.. +...|...|++++|...|+++.. .+...|..+...|..
T Consensus 87 ~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (359)
T 3ieg_A 87 LDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIK 166 (359)
T ss_dssp HHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence 44444444444443210 12222222 25677778888888888877543 466778888888888
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHH------------HHHHH
Q 007517 306 YGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYA------------CMVDL 373 (600)
Q Consensus 306 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~------------~li~~ 373 (600)
.|++++|+..++++.+.. +.+..++..+...+...|++++|.+.++...+.. +.+...+. .+...
T Consensus 167 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~~a~~ 243 (359)
T 3ieg_A 167 EGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD--QDHKRCFAHYKQVKKLNKLIESAEE 243 (359)
T ss_dssp TTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--ccchHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888887652 3455677777778888888888888888877642 22333332 33667
Q ss_pred HhhcCCHHHHHHHHHhC-CCCCC-H----HHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCch
Q 007517 374 LGRAGQVEDAMKLIEAM-PFEPD-A----IIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFH 447 (600)
Q Consensus 374 ~~~~g~~~~A~~~~~~m-~~~p~-~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 447 (600)
+.+.|++++|.+.++++ ...|+ . ..+..+...+...|++++|...++++++..|+++..+..++.+|...|+++
T Consensus 244 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 323 (359)
T 3ieg_A 244 LIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYD 323 (359)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHH
Confidence 88899999999998877 22333 2 235557778889999999999999999999999889999999999999999
Q ss_pred HHHHHHHHHHhC
Q 007517 448 DVAELRKNMRKR 459 (600)
Q Consensus 448 ~a~~~~~~m~~~ 459 (600)
+|.+.+++..+.
T Consensus 324 ~A~~~~~~a~~~ 335 (359)
T 3ieg_A 324 EAIQDYEAAQEH 335 (359)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHhc
Confidence 999999988764
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.84 E-value=1.4e-18 Score=184.25 Aligned_cols=424 Identities=10% Similarity=-0.041 Sum_probs=328.5
Q ss_pred cchHHHHHHHHHhCCChHHHHHHHhhCC---CCCcchHHHHHHHHHcCCCHHHHHHHHccCC---CCCcchHHHHHHHHH
Q 007517 6 VVSWTAMVRGYVEEGMITEAGTLFWQMP---EKNVVSWTVMLGGFIRDSRIDDARRLFDMMP---EKDVVAQTNMVLGYC 79 (600)
Q Consensus 6 ~~~~~~ll~~~~~~g~~~~A~~~~~~m~---~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~ 79 (600)
...|..+...+.+.|++++|++.|+.+. +.++.++..+...|.+.|++++|.+.|+++. +.+...+..+...|.
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 104 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANE 104 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence 4568889999999999999999999987 4577889999999999999999999999887 346778889999999
Q ss_pred hcCChHHHHHHHhhCCCCCcccHHHHHHHHHhCCChHHHHHHHhhcCC--C----CcchHHHHHHHHhcCCChHHHHHHH
Q 007517 80 QDGRVDEGREIFDEMPKKNVISWTTMISGYVNNNRIDVARKLFEVMPE--K----NEVSWTAMLMGYTQCGRIQDAWELF 153 (600)
Q Consensus 80 ~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--p----~~~t~~~ll~~~~~~g~~~~a~~~~ 153 (600)
+.|++++|...|+.+. .+....+..+..+...+....|+..++.+.. | ........+..+....+.+.+...+
T Consensus 105 ~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (537)
T 3fp2_A 105 SLGNFTDAMFDLSVLS-LNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSV 183 (537)
T ss_dssp HHTCHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTS
T ss_pred HcCCHHHHHHHHHHHh-cCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHH
Confidence 9999999999997543 2223333345556666677889999998866 1 1122334444555666777776666
Q ss_pred hhCCCCCcc---chhHHHHHHHhc--------CCHHHHHHHHHhcccCC----------hhhHHHHHHHHHHcCChHHHH
Q 007517 154 KAMPMKSVV---ASNSMILGLGQN--------GEVQKARVVFDQMREKD----------DATWSGMIKVYERKGYELEVI 212 (600)
Q Consensus 154 ~~~~~~~~~---~~~~li~~~~~~--------g~~~~A~~~f~~~~~~~----------~~~~~~li~~~~~~g~~~~A~ 212 (600)
......+.. ....+...+... |++++|..+|+++.+.+ ..+|..+...+...|++++|+
T Consensus 184 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~ 263 (537)
T 3fp2_A 184 NTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQ 263 (537)
T ss_dssp CCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred hhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHH
Confidence 655544333 344444443332 47899999999987642 224667778889999999999
Q ss_pred HHHHHHHHcCCccCchhHhhHHHHHhhhcchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHhhhhhcCC--
Q 007517 213 DLFTLMQKEGVRVNFPSLISVLSVCASLASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFAS-- 290 (600)
Q Consensus 213 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-- 290 (600)
..|++.... .|+...+..+...+...|+++.|...+..+.+.. +.+..++..+...|.+.|++++|...|++...
T Consensus 264 ~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 340 (537)
T 3fp2_A 264 VLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN 340 (537)
T ss_dssp HHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 999999886 4567788888899999999999999999999876 45678899999999999999999999998753
Q ss_pred -CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhcC----CCCCChH
Q 007517 291 -KDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKY----LVEPKTE 365 (600)
Q Consensus 291 -~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~----~~~p~~~ 365 (600)
.+...|..+...|...|++++|+..|+++.+.. +.+...+..+...+...|++++|.+.|+.+.+.. .......
T Consensus 341 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 419 (537)
T 3fp2_A 341 PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIG 419 (537)
T ss_dssp TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHH
Confidence 466889999999999999999999999998853 3345678888899999999999999999876532 1223345
Q ss_pred HHHHHHHHHhhc----------CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchH
Q 007517 366 HYACMVDLLGRA----------GQVEDAMKLIEAM-PFEP-DAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPY 433 (600)
Q Consensus 366 ~~~~li~~~~~~----------g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 433 (600)
.+..+...|.+. |++++|.+.|++. ...| +...|..+...+...|++++|...+++++++.|+++...
T Consensus 420 ~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 499 (537)
T 3fp2_A 420 PLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKL 499 (537)
T ss_dssp HHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHHH
T ss_pred HHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHH
Confidence 566777888888 9999999999987 3234 578899999999999999999999999999999876554
Q ss_pred H
Q 007517 434 I 434 (600)
Q Consensus 434 ~ 434 (600)
.
T Consensus 500 ~ 500 (537)
T 3fp2_A 500 Q 500 (537)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.83 E-value=2.8e-18 Score=171.41 Aligned_cols=302 Identities=13% Similarity=0.039 Sum_probs=206.0
Q ss_pred HHHHHhcCCChHHHHHHHhhCC---CCCccchhHHHHHHHhcCCHHHHHHHHHhccc---CChhhHHHHHHHHHHcCChH
Q 007517 136 MLMGYTQCGRIQDAWELFKAMP---MKSVVASNSMILGLGQNGEVQKARVVFDQMRE---KDDATWSGMIKVYERKGYEL 209 (600)
Q Consensus 136 ll~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~ 209 (600)
+...+...|++++|...++.+. +.++.++..+...|...|++++|...|+++.+ .+...|..+...|...|+++
T Consensus 9 ~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 88 (359)
T 3ieg_A 9 LGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLD 88 (359)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChH
Confidence 3333444444444444444333 22333444444455555555555555554432 13445555555555556666
Q ss_pred HHHHHHHHHHHcCCc--cCchhHhhH------------HHHHhhhcchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHc
Q 007517 210 EVIDLFTLMQKEGVR--VNFPSLISV------------LSVCASLASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKC 275 (600)
Q Consensus 210 ~A~~~~~~m~~~g~~--p~~~t~~~l------------l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~ 275 (600)
+|+..|++..+.... .+...+..+ ...+...|++++|...+..+.+.. +.+..++..+...|.+.
T Consensus 89 ~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 167 (359)
T 3ieg_A 89 EAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELRELRAECFIKE 167 (359)
T ss_dssp HHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHC
Confidence 666655555543210 111222222 456667788888888888877764 45677788888889999
Q ss_pred CCHHHHHhhhhhcCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHH------------HHHHHHh
Q 007517 276 GELVKGKLIFDNFAS---KDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDV-TLV------------GVLSACS 339 (600)
Q Consensus 276 g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~------------~ll~a~~ 339 (600)
|++++|...|+.+.. .+..+|..+...|...|++++|+..|++..+. .|+.. .+. .+...+.
T Consensus 168 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 245 (359)
T 3ieg_A 168 GEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAHYKQVKKLNKLIESAEELI 245 (359)
T ss_dssp TCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999998887654 46788899999999999999999999998874 34432 222 2255688
Q ss_pred ccCCHHHHHHHHHHhHhcCCCCCCh----HHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHH
Q 007517 340 YTGKVKEGREIFESMKSKYLVEPKT----EHYACMVDLLGRAGQVEDAMKLIEAM-PFEP-DAIIWGSLLGACRTHMKLD 413 (600)
Q Consensus 340 ~~g~~~~a~~~~~~~~~~~~~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~ 413 (600)
..|++++|...++.+.+.. +.+. ..+..+...|.+.|++++|.+.+++. ...| +...|..+...+...|+++
T Consensus 246 ~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 323 (359)
T 3ieg_A 246 RDGRYTDATSKYESVMKTE--PSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYD 323 (359)
T ss_dssp HTTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHH
Confidence 8999999999999988753 2223 33566889999999999999999988 3344 6889999999999999999
Q ss_pred HHHHHHHHHhccCCCCCchHHHHHHHHHh
Q 007517 414 LAEVAAKKLLQLEPKNAGPYILLSNIYAS 442 (600)
Q Consensus 414 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 442 (600)
+|...++++++++|+++.....+..++..
T Consensus 324 ~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 352 (359)
T 3ieg_A 324 EAIQDYEAAQEHNENDQQIREGLEKAQRL 352 (359)
T ss_dssp HHHHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 99999999999999998877777766543
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.81 E-value=1.9e-18 Score=171.05 Aligned_cols=283 Identities=10% Similarity=0.099 Sum_probs=115.6
Q ss_pred hcCChHHHHHHHhhCCCCCcccHHHHHHHHHhCCChHHHHHHHhhcCCCCcchHHHHHHHHhcCCChHHHHHHHhhCC--
Q 007517 80 QDGRVDEGREIFDEMPKKNVISWTTMISGYVNNNRIDVARKLFEVMPEKNEVSWTAMLMGYTQCGRIQDAWELFKAMP-- 157 (600)
Q Consensus 80 ~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~-- 157 (600)
+.|++++|.+.++++..|+ +|..|+.++.+.|++++|++.|.+. +|..+|..++.++...|++++|+..++...
T Consensus 15 ~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfika--~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~ 90 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKK 90 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHcC--CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 4466666666666664443 6667777777777777777766442 555566777777777777777777666555
Q ss_pred CCCccchhHHHHHHHhcCCHHHHHHHHHhcccCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCchhHhhHHHHH
Q 007517 158 MKSVVASNSMILGLGQNGEVQKARVVFDQMREKDDATWSGMIKVYERKGYELEVIDLFTLMQKEGVRVNFPSLISVLSVC 237 (600)
Q Consensus 158 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 237 (600)
.+++.+.+.|+.+|.++|+++++.++++. |+..+|+.+...|...|++++|..+|..+ ..|..+..++
T Consensus 91 ~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L 158 (449)
T 1b89_A 91 ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTL 158 (449)
T ss_dssp ------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT---------TCHHHHHHHH
T ss_pred CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHHHHH
Confidence 34456666777777777777776666643 55567777777777777777777777755 3667777777
Q ss_pred hhhcchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHhhhhhcCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 007517 238 ASLASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFASKDIVMWNSIISGYAQYGLGEKSLKVFH 317 (600)
Q Consensus 238 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 317 (600)
.+.|+++.|.+.+..+ .++.+|..++.++...|+++.|......+. .++.-...++..|.+.|++++|+.+++
T Consensus 159 ~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~eEai~lLe 231 (449)
T 1b89_A 159 VHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYFEELITMLE 231 (449)
T ss_dssp HTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCHHHHHHHHH
Confidence 7777777777777666 256777777777777777777777666554 333334457778888888888888888
Q ss_pred HHHHCCCCCC-HHHHHHH--HHHHhccCCHHHHHHHHHHhHhcCCCCC------ChHHHHHHHHHHhhcCCHHHHHHHHH
Q 007517 318 EMFSSGVMPD-DVTLVGV--LSACSYTGKVKEGREIFESMKSKYLVEP------KTEHYACMVDLLGRAGQVEDAMKLIE 388 (600)
Q Consensus 318 ~m~~~g~~p~-~~t~~~l--l~a~~~~g~~~~a~~~~~~~~~~~~~~p------~~~~~~~li~~~~~~g~~~~A~~~~~ 388 (600)
..... .+. ...|+.+ +.+-.+.+++.+..+.|. ++-+++| +..+|..++..|..-++++.|...+-
T Consensus 232 ~aL~l--e~ah~~~ftel~il~~ky~p~k~~ehl~~~~---~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~ 306 (449)
T 1b89_A 232 AALGL--ERAHMGMFTELAILYSKFKPQKMREHLELFW---SRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMM 306 (449)
T ss_dssp HHTTS--TTCCHHHHHHHHHHHHTTCHHHHHHHHHHHS---TTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHhCC--cHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH---HHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHH
Confidence 87643 333 2334433 333334445555555554 2234444 46778899999999999999887665
Q ss_pred hC
Q 007517 389 AM 390 (600)
Q Consensus 389 ~m 390 (600)
+-
T Consensus 307 ~h 308 (449)
T 1b89_A 307 NH 308 (449)
T ss_dssp HS
T ss_pred hC
Confidence 54
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.6e-17 Score=163.83 Aligned_cols=286 Identities=11% Similarity=-0.028 Sum_probs=212.8
Q ss_pred CCCccchhHHHHHHHhcCCHHHHHHHHHhcccC---ChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCchhHhhHH
Q 007517 158 MKSVVASNSMILGLGQNGEVQKARVVFDQMREK---DDATWSGMIKVYERKGYELEVIDLFTLMQKEGVRVNFPSLISVL 234 (600)
Q Consensus 158 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 234 (600)
+.++.+...+...+...|++++|.++|+++.+. +...+..++..+...|++++|+.+++++.... +.+...+..+.
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 455566666777777777777777777776532 44556667777777788888888777777642 23455666666
Q ss_pred HHHhhhc-chHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHhhhhhcCC---CCHHHHHHHHHHHHhcCChH
Q 007517 235 SVCASLA-SLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFAS---KDIVMWNSIISGYAQYGLGE 310 (600)
Q Consensus 235 ~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~ 310 (600)
..+...| ++++|...+..+.+.. +.+...+..+...|...|++++|...|+++.. .+...|..+...|...|+++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHH
Confidence 7777777 7777877777777654 44566777788888888888888888877643 34566777888888888888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhcCC-------CCCChHHHHHHHHHHhhcCCHHHH
Q 007517 311 KSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYL-------VEPKTEHYACMVDLLGRAGQVEDA 383 (600)
Q Consensus 311 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~-------~~p~~~~~~~li~~~~~~g~~~~A 383 (600)
+|++.|++..+.. +.+...+..+...+...|++++|...++.+.+... .+.....+..+...|.+.|++++|
T Consensus 177 ~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 255 (330)
T 3hym_B 177 LAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEA 255 (330)
T ss_dssp HHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHH
Confidence 8888888887652 33456777788888888888888888888765321 133467888999999999999999
Q ss_pred HHHHHhC-CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHH-HhcCCc
Q 007517 384 MKLIEAM-PFE-PDAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIY-ASQGRF 446 (600)
Q Consensus 384 ~~~~~~m-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~ 446 (600)
.+.+++. ... .+...|..+...+...|++++|...+++++++.|+++..+..++.++ ...|+.
T Consensus 256 ~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 256 LDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp HHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC-
T ss_pred HHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCch
Confidence 9998877 222 35778888899999999999999999999999999988888888888 455553
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.78 E-value=3.2e-17 Score=162.31 Aligned_cols=342 Identities=11% Similarity=0.065 Sum_probs=166.3
Q ss_pred hCCChHHHHHHHhhCCCCCcchHHHHHHHHHcCCCHHHHHHHHccCCCCCcchHHHHHHHHHhcCChHHHHHHHhhCCC-
Q 007517 18 EEGMITEAGTLFWQMPEKNVVSWTVMLGGFIRDSRIDDARRLFDMMPEKDVVAQTNMVLGYCQDGRVDEGREIFDEMPK- 96 (600)
Q Consensus 18 ~~g~~~~A~~~~~~m~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~- 96 (600)
+.|++++|.++++++..| .+|+.|..++.+.|++++|.+.|.+. +|...|..++..+.+.|++++|++.++...+
T Consensus 15 ~~~~ld~A~~fae~~~~~--~vWs~La~A~l~~g~~~eAIdsfika--~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~ 90 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKK 90 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCCh--HHHHHHHHHHHHcCCHHHHHHHHHcC--CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 668899999999999554 48999999999999999999999764 5777999999999999999999997776654
Q ss_pred -CCcccHHHHHHHHHhCCChHHHHHHHhhcCCCCcchHHHHHHHHhcCCChHHHHHHHhhCCCCCccchhHHHHHHHhcC
Q 007517 97 -KNVISWTTMISGYVNNNRIDVARKLFEVMPEKNEVSWTAMLMGYTQCGRIQDAWELFKAMPMKSVVASNSMILGLGQNG 175 (600)
Q Consensus 97 -~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g 175 (600)
+++.+.+.++.+|.+.|++.++.++++ .|+..+|..+...|...|.+++|...|..+ ..|..|++.+.+.|
T Consensus 91 ~~~~~i~~~Li~~Y~Klg~l~e~e~f~~---~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-----~n~~~LA~~L~~Lg 162 (449)
T 1b89_A 91 ARESYVETELIFALAKTNRLAELEEFIN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLG 162 (449)
T ss_dssp ------------------CHHHHTTTTT---CC----------------CTTTHHHHHHHT-----TCHHHHHHHHHTTT
T ss_pred CccchhHHHHHHHHHHhCCHHHHHHHHc---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----hhHHHHHHHHHHhc
Confidence 456789999999999999999887774 388889999999999999999999999987 58999999999999
Q ss_pred CHHHHHHHHHhcccCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCchhHhhHHHHHhhhcchHHHHHHHHHHHH
Q 007517 176 EVQKARVVFDQMREKDDATWSGMIKVYERKGYELEVIDLFTLMQKEGVRVNFPSLISVLSVCASLASLDHGRQVHAQLVR 255 (600)
Q Consensus 176 ~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 255 (600)
++++|.+.++++. ++.+|..++.+|...|+++.|......+ .+.|+. ...++..+.+.|.++++..+++....
T Consensus 163 ~yq~AVea~~KA~--~~~~Wk~v~~aCv~~~ef~lA~~~~l~L---~~~ad~--l~~lv~~Yek~G~~eEai~lLe~aL~ 235 (449)
T 1b89_A 163 EYQAAVDGARKAN--STRTWKEVCFACVDGKEFRLAQMCGLHI---VVHADE--LEELINYYQDRGYFEELITMLEAALG 235 (449)
T ss_dssp CHHHHHHHHHHHT--CHHHHHHHHHHHHHTTCHHHHHHTTTTT---TTCHHH--HHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHcC--CchhHHHHHHHHHHcCcHHHHHHHHHHH---HhCHhh--HHHHHHHHHHCCCHHHHHHHHHHHhC
Confidence 9999999999984 8999999999999999999996655432 133433 44688889999999999999999887
Q ss_pred cCCCCchhhHHHHHHHHHHc--CCHHHHHhhhhhcCC--------CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC-CC
Q 007517 256 CQFDVDVYVASVLITMYIKC--GELVKGKLIFDNFAS--------KDIVMWNSIISGYAQYGLGEKSLKVFHEMFSS-GV 324 (600)
Q Consensus 256 ~~~~~~~~~~~~li~~y~~~--g~~~~A~~~~~~~~~--------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~ 324 (600)
.. +-....|+-|.-+|++- +++.+..+.|..-.. .+...|.-+.-.|...++++.|... |.+. ..
T Consensus 236 le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~t---m~~h~~~ 311 (449)
T 1b89_A 236 LE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT---MMNHPTD 311 (449)
T ss_dssp ST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHH---HHHSTTT
T ss_pred Cc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHH---HHhCChh
Confidence 66 66677888888888774 677888888865443 2456899999999999999998874 4443 12
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC
Q 007517 325 MPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM 390 (600)
Q Consensus 325 ~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 390 (600)
.-+...|-.++ .+..+.+---+...-.... .| ...+-|+.++...=+...+.++|++.
T Consensus 312 a~~~~~f~~~~---~kv~n~elyYkai~fyl~~---~p--~~l~~ll~~l~~~ld~~r~v~~~~~~ 369 (449)
T 1b89_A 312 AWKEGQFKDII---TKVANVELYYRAIQFYLEF---KP--LLLNDLLMVLSPRLDHTRAVNYFSKV 369 (449)
T ss_dssp TCCHHHHHHHH---HHCSSTHHHHHHHHHHHHH---CG--GGHHHHHHHHGGGCCHHHHHHHHHHT
T ss_pred hhhhHHHHHHH---hchhHHHHHHHHHHHHHhc---CH--HHHHHHHHHHHhccCcHHHHHHHHHc
Confidence 22334444443 3444433322222222222 22 23455555555555566666666555
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.78 E-value=8e-17 Score=158.87 Aligned_cols=264 Identities=11% Similarity=0.035 Sum_probs=229.5
Q ss_pred CChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCchhHhhHHHHHhhhcchHHHHHHHHHHHHcCCCCchhhHHHHH
Q 007517 190 KDDATWSGMIKVYERKGYELEVIDLFTLMQKEGVRVNFPSLISVLSVCASLASLDHGRQVHAQLVRCQFDVDVYVASVLI 269 (600)
Q Consensus 190 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 269 (600)
.+...+..+...+...|++++|+.+|+++.... +.+...+..++..+...|++++|...+..+.+.. +.+..++..+.
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 467778889999999999999999999998764 3345566677888899999999999999999875 55678889999
Q ss_pred HHHHHcC-CHHHHHhhhhhcCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHH
Q 007517 270 TMYIKCG-ELVKGKLIFDNFAS---KDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVK 345 (600)
Q Consensus 270 ~~y~~~g-~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~ 345 (600)
..|...| ++++|...|++... .+...|..+...|...|++++|++.|+++.+.. +.+...+..+...+...|+++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHH
Confidence 9999999 99999999998754 467889999999999999999999999998853 334566777888999999999
Q ss_pred HHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CC----------CCCHHHHHHHHHHHHHcCCHHH
Q 007517 346 EGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM-PF----------EPDAIIWGSLLGACRTHMKLDL 414 (600)
Q Consensus 346 ~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~----------~p~~~~~~~ll~~~~~~g~~~~ 414 (600)
+|.+.++.+.+. .+.+...+..+...|.+.|++++|.+.+++. .. ..+..+|..+...+...|++++
T Consensus 177 ~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 254 (330)
T 3hym_B 177 LAERFFSQALSI--APEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE 254 (330)
T ss_dssp HHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHh--CCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHH
Confidence 999999999874 2456889999999999999999999999876 11 3346789999999999999999
Q ss_pred HHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007517 415 AEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMRK 458 (600)
Q Consensus 415 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 458 (600)
|...++++++..|+++..+..++.+|...|++++|.+.+++..+
T Consensus 255 A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 298 (330)
T 3hym_B 255 ALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALG 298 (330)
T ss_dssp HHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTT
T ss_pred HHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999997654
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.77 E-value=3.6e-16 Score=163.69 Aligned_cols=362 Identities=11% Similarity=0.007 Sum_probs=270.3
Q ss_pred CcchHHHHHHHHHh----cCChHHHHHHHhhCCC-CCcccHHHHHHHHHh----CCChHHHHHHHhhcCC-CCcchHHHH
Q 007517 67 DVVAQTNMVLGYCQ----DGRVDEGREIFDEMPK-KNVISWTTMISGYVN----NNRIDVARKLFEVMPE-KNEVSWTAM 136 (600)
Q Consensus 67 ~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~-p~~~t~~~l 136 (600)
++..+..|...|.. .+++++|...|++..+ .+..++..|...|.. .+++++|+..|++..+ .+...+..+
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~L 117 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGLPQAQQNL 117 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 44555555555555 6667777777665443 355666667777776 6777777777777655 455566666
Q ss_pred HHHHhc----CCChHHHHHHHhhCC-CCCccchhHHHHHHHh----cCCHHHHHHHHHhcccC-ChhhHHHHHHHHHH--
Q 007517 137 LMGYTQ----CGRIQDAWELFKAMP-MKSVVASNSMILGLGQ----NGEVQKARVVFDQMREK-DDATWSGMIKVYER-- 204 (600)
Q Consensus 137 l~~~~~----~g~~~~a~~~~~~~~-~~~~~~~~~li~~~~~----~g~~~~A~~~f~~~~~~-~~~~~~~li~~~~~-- 204 (600)
...+.. .+++++|...|+... ..++..+..|..+|.. .++.++|.+.|++..+. +..++..+...|..
T Consensus 118 g~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~ 197 (490)
T 2xm6_A 118 GVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGYMYSRGL 197 (490)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCC
Confidence 666666 677777777777766 4455666777777776 77888888888877654 67778888888887
Q ss_pred --cCChHHHHHHHHHHHHcCCccCchhHhhHHHHHhh----hcchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHH----
Q 007517 205 --KGYELEVIDLFTLMQKEGVRVNFPSLISVLSVCAS----LASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIK---- 274 (600)
Q Consensus 205 --~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~---- 274 (600)
.+++++|+..|++..+.| +...+..+...+.. .++.++|...+....+.+ +...+..|..+|..
T Consensus 198 g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~ 271 (490)
T 2xm6_A 198 GVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAG 271 (490)
T ss_dssp SSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTS
T ss_pred CCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCC
Confidence 788999999998887765 34555566666654 678899999998888765 45567778888888
Q ss_pred cCCHHHHHhhhhhcCC-CCHHHHHHHHHHHHhc-----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC---CHH
Q 007517 275 CGELVKGKLIFDNFAS-KDIVMWNSIISGYAQY-----GLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTG---KVK 345 (600)
Q Consensus 275 ~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g---~~~ 345 (600)
.++.++|...|++..+ .+..++..+...|... +++++|+..|++..+.| +...+..+-..+...| +.+
T Consensus 272 ~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~ 348 (490)
T 2xm6_A 272 AKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHK 348 (490)
T ss_dssp SCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHH
Confidence 8999999999988765 4677888888888887 89999999999998875 3445555666665556 789
Q ss_pred HHHHHHHHhHhcCCCCCChHHHHHHHHHHhh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHH
Q 007517 346 EGREIFESMKSKYLVEPKTEHYACMVDLLGR----AGQVEDAMKLIEAMPFEPDAIIWGSLLGACRT----HMKLDLAEV 417 (600)
Q Consensus 346 ~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~----~g~~~~a~~ 417 (600)
+|.++|++..+. .++..+..|..+|.. .+++++|.+.|++.-...+...+..|...|.. .++.++|..
T Consensus 349 ~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~ 424 (490)
T 2xm6_A 349 KAVEWFRKAAAK----GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLGVERDYVQAWA 424 (490)
T ss_dssp HHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred HHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 999999998874 467888899999988 89999999999987223467788888888888 899999999
Q ss_pred HHHHHhccCCC---CCchHHHHHHHHH
Q 007517 418 AAKKLLQLEPK---NAGPYILLSNIYA 441 (600)
Q Consensus 418 ~~~~~~~~~p~---~~~~~~~l~~~~~ 441 (600)
.++++.+.+|+ ++.....++.++.
T Consensus 425 ~~~~A~~~~~~~~~~~~a~~~l~~~~~ 451 (490)
T 2xm6_A 425 WFDTASTNDMNLFGTENRNITEKKLTA 451 (490)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHTTSCH
T ss_pred HHHHHHHCCCCCcCCHHHHHHHHhcCH
Confidence 99999998854 5555555555544
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.77 E-value=5.2e-16 Score=164.15 Aligned_cols=175 Identities=11% Similarity=0.080 Sum_probs=85.2
Q ss_pred HHHhhhhhcCC---C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhccCCHHHHHHHHHH
Q 007517 280 KGKLIFDNFAS---K-DIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDD--VTLVGVLSACSYTGKVKEGREIFES 353 (600)
Q Consensus 280 ~A~~~~~~~~~---~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~ 353 (600)
+|..+|++... | +...|..++..+.+.|++++|..+|+++.+. .|+. ..|......+.+.|++++|+++|+.
T Consensus 304 ~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 381 (530)
T 2ooe_A 304 EAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKK 381 (530)
T ss_dssp HHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 55555554432 1 3455555555555555555555555555542 3332 2444444445555555555555555
Q ss_pred hHhcCCCCCChHHHHHHHHH-HhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCC
Q 007517 354 MKSKYLVEPKTEHYACMVDL-LGRAGQVEDAMKLIEAM-PFEP-DAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNA 430 (600)
Q Consensus 354 ~~~~~~~~p~~~~~~~li~~-~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 430 (600)
..+.. +.+...|...+.+ +...|++++|.++|++. ...| +...|..++..+...|+.+.|..+++++++..|.+|
T Consensus 382 Al~~~--~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~ 459 (530)
T 2ooe_A 382 AREDA--RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPP 459 (530)
T ss_dssp HHTCT--TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCG
T ss_pred HHhcc--CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCH
Confidence 54421 1122222222211 22355555555555544 1122 345555555555555555555555555555544433
Q ss_pred c----hHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007517 431 G----PYILLSNIYASQGRFHDVAELRKNMRK 458 (600)
Q Consensus 431 ~----~~~~l~~~~~~~g~~~~a~~~~~~m~~ 458 (600)
. .+...+......|+.+.+.++.+++.+
T Consensus 460 ~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~ 491 (530)
T 2ooe_A 460 EKSGEIWARFLAFESNIGDLASILKVEKRRFT 491 (530)
T ss_dssp GGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3 344444444555555555555555543
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.77 E-value=6.2e-16 Score=163.57 Aligned_cols=390 Identities=10% Similarity=0.092 Sum_probs=282.5
Q ss_pred CCCcchHHHHHHHHHcCCCHHHHHHHHccCCC---CCcchHHHHHHHHHhcCChHHHHHHHhhCCC--CCcccHHHHHHH
Q 007517 34 EKNVVSWTVMLGGFIRDSRIDDARRLFDMMPE---KDVVAQTNMVLGYCQDGRVDEGREIFDEMPK--KNVISWTTMISG 108 (600)
Q Consensus 34 ~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~li~~ 108 (600)
+.|...|..++. +.+.|++++|+.+|+++.+ .+...|..++..+.+.|++++|+.+|++... |++..|...+..
T Consensus 10 P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~lw~~~~~~ 88 (530)
T 2ooe_A 10 PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLSY 88 (530)
T ss_dssp TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHH
Confidence 346778888888 4788999999999999874 3566789999999999999999999999876 777778777753
Q ss_pred H-HhCCChHHHHH----HHhhcCC-----C-CcchHHHHHHHHhc---------CCChHHHHHHHhhCCC-CCc---cch
Q 007517 109 Y-VNNNRIDVARK----LFEVMPE-----K-NEVSWTAMLMGYTQ---------CGRIQDAWELFKAMPM-KSV---VAS 164 (600)
Q Consensus 109 ~-~~~g~~~~A~~----~~~~m~~-----p-~~~t~~~ll~~~~~---------~g~~~~a~~~~~~~~~-~~~---~~~ 164 (600)
. ...|+.++|.+ +|++... | +...|...+..... .|+++.|..+|+..+. |.. ..|
T Consensus 89 ~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~ 168 (530)
T 2ooe_A 89 VRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLW 168 (530)
T ss_dssp HHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHH
T ss_pred HHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHH
Confidence 3 35677777665 6666533 2 34566666665543 6889999999999883 221 122
Q ss_pred hHHHHHH-------------HhcCCHHHHHHHHHhc------cc-------CC--------hhhHHHHHHHHHHc----C
Q 007517 165 NSMILGL-------------GQNGEVQKARVVFDQM------RE-------KD--------DATWSGMIKVYERK----G 206 (600)
Q Consensus 165 ~~li~~~-------------~~~g~~~~A~~~f~~~------~~-------~~--------~~~~~~li~~~~~~----g 206 (600)
....... .+.++++.|..++.+. .+ |+ ...|...+.....+ +
T Consensus 169 ~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~ 248 (530)
T 2ooe_A 169 RDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTE 248 (530)
T ss_dssp HHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCS
T ss_pred HHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCC
Confidence 2222211 1234567777766651 11 11 24566665443332 2
Q ss_pred Ch----HHHHHHHHHHHHcCCccCchhHhhHHHHHhh-------hcchH-------HHHHHHHHHHHcCCCCchhhHHHH
Q 007517 207 YE----LEVIDLFTLMQKEGVRVNFPSLISVLSVCAS-------LASLD-------HGRQVHAQLVRCQFDVDVYVASVL 268 (600)
Q Consensus 207 ~~----~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~-------~~~~~-------~a~~~~~~~~~~~~~~~~~~~~~l 268 (600)
+. .+|+.+|++..... +-+...|......+.. .|+++ .|..+++..++.-.+.+..++..+
T Consensus 249 ~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~ 327 (530)
T 2ooe_A 249 DQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAY 327 (530)
T ss_dssp CSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHH
Confidence 22 47788899888752 2345566666666654 68877 889999998874345678889999
Q ss_pred HHHHHHcCCHHHHHhhhhhcCC--C-CH-HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHH-HhccC
Q 007517 269 ITMYIKCGELVKGKLIFDNFAS--K-DI-VMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPD-DVTLVGVLSA-CSYTG 342 (600)
Q Consensus 269 i~~y~~~g~~~~A~~~~~~~~~--~-~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a-~~~~g 342 (600)
+..+.+.|++++|..+|+++.. | +. ..|...+..+.+.|+.++|.++|++..+. .|+ ...+...... +...|
T Consensus 328 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~--~~~~~~~~~~~a~~~~~~~~ 405 (530)
T 2ooe_A 328 ADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEYYCSK 405 (530)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--TTCCTHHHHHHHHHHHHHTC
T ss_pred HHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--cCCchHHHHHHHHHHHHHcC
Confidence 9999999999999999998653 3 33 58999999899999999999999999875 333 2233322222 23589
Q ss_pred CHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC----CCCCC--HHHHHHHHHHHHHcCCHHHHH
Q 007517 343 KVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM----PFEPD--AIIWGSLLGACRTHMKLDLAE 416 (600)
Q Consensus 343 ~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~--~~~~~~ll~~~~~~g~~~~a~ 416 (600)
+.++|..+|+...+.. +.++..|..+++.+.+.|+.++|..+|++. +..|+ ...|...+.....+|+.+.+.
T Consensus 406 ~~~~A~~~~e~al~~~--p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~ 483 (530)
T 2ooe_A 406 DKSVAFKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASIL 483 (530)
T ss_dssp CHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHH
T ss_pred ChhHHHHHHHHHHHHC--CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999988753 346889999999999999999999999987 33342 558988899889999999999
Q ss_pred HHHHHHhccCCCC
Q 007517 417 VAAKKLLQLEPKN 429 (600)
Q Consensus 417 ~~~~~~~~~~p~~ 429 (600)
.+.+++.+..|++
T Consensus 484 ~~~~r~~~~~p~~ 496 (530)
T 2ooe_A 484 KVEKRRFTAFREE 496 (530)
T ss_dssp HHHHHHHHHTHHH
T ss_pred HHHHHHHHHCchh
Confidence 9999999998865
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.77 E-value=5.9e-15 Score=162.20 Aligned_cols=373 Identities=11% Similarity=0.107 Sum_probs=256.7
Q ss_pred HHHHHHHHcCCCHHHHHHHHccCC-CC-----CcchHHHHHHHHHhcCChHHHHHHHhhCCCCCcccHHHHHHHHHhCCC
Q 007517 41 TVMLGGFIRDSRIDDARRLFDMMP-EK-----DVVAQTNMVLGYCQDGRVDEGREIFDEMPKKNVISWTTMISGYVNNNR 114 (600)
Q Consensus 41 ~~ll~~~~~~g~~~~A~~~~~~m~-~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~ 114 (600)
+..+++|...|.+.+|.++++++. ++ +....+.|+.+..+. +..+..+..++...-+ ..-+...+...|.
T Consensus 989 s~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d---~~eIA~Iai~lgl 1064 (1630)
T 1xi4_A 989 SVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD---APDIANIAISNEL 1064 (1630)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc---HHHHHHHHHhCCC
Confidence 334455555555556665555554 11 112333444444443 2333333333332211 3335566777788
Q ss_pred hHHHHHHHhhcCCCCcchHHHHHHHHhcCCChHHHHHHHhhCCCCCccchhHHHHHHHhcCCHHHHHHHHHhcccCChhh
Q 007517 115 IDVARKLFEVMPEKNEVSWTAMLMGYTQCGRIQDAWELFKAMPMKSVVASNSMILGLGQNGEVQKARVVFDQMREKDDAT 194 (600)
Q Consensus 115 ~~~A~~~~~~m~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~ 194 (600)
+++|..+|++...++ ...+.++. ..+++++|.++.+++ .++.+|..+..++.+.|++++|...|.+. .|...
T Consensus 1065 yEEAf~IYkKa~~~~-~A~~VLie---~i~nldrAiE~Aerv--n~p~vWsqLAKAql~~G~~kEAIdsYiKA--dD~sa 1136 (1630)
T 1xi4_A 1065 FEEAFAIFRKFDVNT-SAVQVLIE---HIGNLDRAYEFAERC--NEPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSS 1136 (1630)
T ss_pred HHHHHHHHHHcCCHH-HHHHHHHH---HHhhHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCHHHHHHHHHhc--CChHH
Confidence 888888888764311 11122222 567788888887766 44667888888888888888888888664 57778
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCccCchhHhhHHHHHhhhcchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHH
Q 007517 195 WSGMIKVYERKGYELEVIDLFTLMQKEGVRVNFPSLISVLSVCASLASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIK 274 (600)
Q Consensus 195 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~ 274 (600)
|..++..+.+.|++++|+++|...++.. ++....+.+..++++.++++....+. + .++...+..+.+.|..
T Consensus 1137 y~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~iGd~le~ 1207 (1630)
T 1xi4_A 1137 YMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYD 1207 (1630)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHh
Confidence 8888888888888888888888776653 33333445777888888777544332 2 3455566678888888
Q ss_pred cCCHHHHHhhhhhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHh
Q 007517 275 CGELVKGKLIFDNFASKDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESM 354 (600)
Q Consensus 275 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~ 354 (600)
.|++++|..+|... ..|..+...|.+.|++++|++.+++. -+..+|..+-.+|...|++..|......
T Consensus 1208 eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~- 1275 (1630)
T 1xi4_A 1208 EKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH- 1275 (1630)
T ss_pred cCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHh-
Confidence 88899998888875 48888888898889999999888876 3557888888888888888888876553
Q ss_pred HhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHc--CCHHHHHHHHHHHhccCC---
Q 007517 355 KSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM-PFEPD-AIIWGSLLGACRTH--MKLDLAEVAAKKLLQLEP--- 427 (600)
Q Consensus 355 ~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~--g~~~~a~~~~~~~~~~~p--- 427 (600)
+..++..+..++..|.+.|.+++|.++++.. +..|. ...|+-|...+.+. ++..++.+.|..-..+.|
T Consensus 1276 -----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r 1350 (1630)
T 1xi4_A 1276 -----IVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLR 1350 (1630)
T ss_pred -----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhH
Confidence 2346777889999999999999999999876 55554 44566666666654 566677777776666655
Q ss_pred --CCCchHHHHHHHHHhcCCchHHHH
Q 007517 428 --KNAGPYILLSNIYASQGRFHDVAE 451 (600)
Q Consensus 428 --~~~~~~~~l~~~~~~~g~~~~a~~ 451 (600)
.++..+..+...|.+.|+|+.|..
T Consensus 1351 ~~e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1351 AAEQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred HHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 566778889999999999999984
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.76 E-value=3.9e-17 Score=164.04 Aligned_cols=292 Identities=12% Similarity=0.007 Sum_probs=197.2
Q ss_pred cCCChHHHHH-HHhhCC---CC----CccchhHHHHHHHhcCCHHHHHHHHHhccc---CChhhHHHHHHHHHHcCChHH
Q 007517 142 QCGRIQDAWE-LFKAMP---MK----SVVASNSMILGLGQNGEVQKARVVFDQMRE---KDDATWSGMIKVYERKGYELE 210 (600)
Q Consensus 142 ~~g~~~~a~~-~~~~~~---~~----~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~ 210 (600)
..|++++|.. .+.... +. +...+..+...|.+.|++++|...|+++.+ .+..+|..+...|...|++++
T Consensus 37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 116 (368)
T 1fch_A 37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELL 116 (368)
T ss_dssp ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHH
Confidence 3466777776 666555 11 234455666677777777777777776653 245566667777777777777
Q ss_pred HHHHHHHHHHcCCccCchhHhhHHHHHhhhcchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHhhhhhcCC
Q 007517 211 VIDLFTLMQKEGVRVNFPSLISVLSVCASLASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFAS 290 (600)
Q Consensus 211 A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~ 290 (600)
|+..|+++.... +.+..++..+...+...|++++|...+..+.+.... +...+..+... .. . .
T Consensus 117 A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~-------~~-------~-~ 179 (368)
T 1fch_A 117 AISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEG-------AG-------G-A 179 (368)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC------------------------
T ss_pred HHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHH-------hh-------h-h
Confidence 777777766643 224455555666666666666666666666654321 11111111000 00 0 0
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHH
Q 007517 291 KDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMP---DDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHY 367 (600)
Q Consensus 291 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~ 367 (600)
.....+..+. .+...|++++|+..|+++.+. .| +..++..+...+...|++++|...++.+.+.. +.+...+
T Consensus 180 ~~~~~~~~~~-~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~ 254 (368)
T 1fch_A 180 GLGPSKRILG-SLLSDSLFLEVKELFLAAVRL--DPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR--PNDYLLW 254 (368)
T ss_dssp ------CTTH-HHHHHHHHHHHHHHHHHHHHH--STTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHH
T ss_pred cccHHHHHHH-HHhhcccHHHHHHHHHHHHHh--CcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCCHHHH
Confidence 0001111223 333788999999999999875 34 46788888899999999999999999988752 4467899
Q ss_pred HHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC-----------CchHH
Q 007517 368 ACMVDLLGRAGQVEDAMKLIEAM-PFEP-DAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKN-----------AGPYI 434 (600)
Q Consensus 368 ~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~-----------~~~~~ 434 (600)
..+...|.+.|++++|.+.++++ ...| +...|..+...+...|++++|...+++++++.|++ +..+.
T Consensus 255 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~ 334 (368)
T 1fch_A 255 NKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWS 334 (368)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHH
Confidence 99999999999999999999987 3334 57889999999999999999999999999988877 67899
Q ss_pred HHHHHHHhcCCchHHHHHHHH
Q 007517 435 LLSNIYASQGRFHDVAELRKN 455 (600)
Q Consensus 435 ~l~~~~~~~g~~~~a~~~~~~ 455 (600)
.++.+|...|++++|..++++
T Consensus 335 ~l~~~~~~~g~~~~A~~~~~~ 355 (368)
T 1fch_A 335 TLRLALSMLGQSDAYGAADAR 355 (368)
T ss_dssp HHHHHHHHHTCGGGHHHHHTT
T ss_pred HHHHHHHHhCChHhHHHhHHH
Confidence 999999999999999988763
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.75 E-value=4e-15 Score=155.68 Aligned_cols=350 Identities=11% Similarity=0.025 Sum_probs=295.8
Q ss_pred CCCcccHHHHHHHHHh----CCChHHHHHHHhhcCC-CCcchHHHHHHHHhc----CCChHHHHHHHhhCC-CCCccchh
Q 007517 96 KKNVISWTTMISGYVN----NNRIDVARKLFEVMPE-KNEVSWTAMLMGYTQ----CGRIQDAWELFKAMP-MKSVVASN 165 (600)
Q Consensus 96 ~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~-p~~~t~~~ll~~~~~----~g~~~~a~~~~~~~~-~~~~~~~~ 165 (600)
..++.++..|...|.. .+++++|+..|++..+ .+...+..+...+.. .++.++|...|++.. ..++..+.
T Consensus 36 ~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~ 115 (490)
T 2xm6_A 36 SGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGLPQAQQ 115 (490)
T ss_dssp TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred CCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 3577788888888888 8999999999998877 677788888888888 899999999999988 55677788
Q ss_pred HHHHHHHh----cCCHHHHHHHHHhcccC-ChhhHHHHHHHHHH----cCChHHHHHHHHHHHHcCCccCchhHhhHHHH
Q 007517 166 SMILGLGQ----NGEVQKARVVFDQMREK-DDATWSGMIKVYER----KGYELEVIDLFTLMQKEGVRVNFPSLISVLSV 236 (600)
Q Consensus 166 ~li~~~~~----~g~~~~A~~~f~~~~~~-~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 236 (600)
.|..+|.. .++.++|...|++..+. +...+..+...|.. .+++++|++.|++..+.| +...+..+...
T Consensus 116 ~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~ 192 (490)
T 2xm6_A 116 NLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYM 192 (490)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHH
Confidence 88899988 88999999999998765 67788888888988 889999999999998875 55667777777
Q ss_pred Hhh----hcchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHH----cCCHHHHHhhhhhcCC-CCHHHHHHHHHHHHh--
Q 007517 237 CAS----LASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIK----CGELVKGKLIFDNFAS-KDIVMWNSIISGYAQ-- 305 (600)
Q Consensus 237 ~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~-- 305 (600)
+.. .++.++|...+....+.| +......|..+|.. .++.++|...|++..+ .+..++..+...|..
T Consensus 193 y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~ 269 (490)
T 2xm6_A 193 YSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYILEQGL 269 (490)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTT
T ss_pred HhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCC
Confidence 776 789999999999999876 56678888889987 8999999999998765 577788888888888
Q ss_pred --cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc-----CCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcC
Q 007517 306 --YGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYT-----GKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAG 378 (600)
Q Consensus 306 --~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~-----g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 378 (600)
.++.++|+++|++..+.| +...+..+...+... ++.++|..+|+...+. .+...+..+..+|.+.|
T Consensus 270 ~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~y~~~g 342 (490)
T 2xm6_A 270 AGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ----GDATAQANLGAIYFRLG 342 (490)
T ss_dssp TSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHSC
T ss_pred CCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHhCC
Confidence 899999999999998765 344555666666665 8999999999998874 35677888999998867
Q ss_pred ---CHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHh----cCCch
Q 007517 379 ---QVEDAMKLIEAMPFEPDAIIWGSLLGACRT----HMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYAS----QGRFH 447 (600)
Q Consensus 379 ---~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~ 447 (600)
++++|.+.|++.-...+...+..|...|.. .+++++|...++++.+.. ++..+..|+.+|.. .++++
T Consensus 343 ~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g~~~d~~ 420 (490)
T 2xm6_A 343 SEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGLGVERDYV 420 (490)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHH
T ss_pred CcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCCCCCCHH
Confidence 789999999987223578889999999988 899999999999998864 46789999999998 89999
Q ss_pred HHHHHHHHHHhCC
Q 007517 448 DVAELRKNMRKRN 460 (600)
Q Consensus 448 ~a~~~~~~m~~~g 460 (600)
+|.+.+++..+.+
T Consensus 421 ~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 421 QAWAWFDTASTND 433 (490)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCC
Confidence 9999999998866
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.75 E-value=1.3e-16 Score=160.13 Aligned_cols=277 Identities=12% Similarity=0.023 Sum_probs=154.3
Q ss_pred hCCChHHHHH-HHhhcCC--C-----CcchHHHHHHHHhcCCChHHHHHHHhhCC---CCCccchhHHHHHHHhcCCHHH
Q 007517 111 NNNRIDVARK-LFEVMPE--K-----NEVSWTAMLMGYTQCGRIQDAWELFKAMP---MKSVVASNSMILGLGQNGEVQK 179 (600)
Q Consensus 111 ~~g~~~~A~~-~~~~m~~--p-----~~~t~~~ll~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~ 179 (600)
..|++++|++ .|.+... | +...+..+...+...|++++|...++.+. +.+..++..+...|.+.|++++
T Consensus 37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 116 (368)
T 1fch_A 37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELL 116 (368)
T ss_dssp ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHH
Confidence 3456666666 6665544 2 23456666777777777777777777666 4455667777788888888888
Q ss_pred HHHHHHhccc---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCchhHhh----------------HHHHHhhh
Q 007517 180 ARVVFDQMRE---KDDATWSGMIKVYERKGYELEVIDLFTLMQKEGVRVNFPSLIS----------------VLSVCASL 240 (600)
Q Consensus 180 A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~----------------ll~~~~~~ 240 (600)
|...|+++.+ .+..+|..+...|...|++++|+..|+++.... |+...... .+..+...
T Consensus 117 A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (368)
T 1fch_A 117 AISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYT--PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSD 194 (368)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--TTTGGGCC---------------CTTHHHHHH
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHhhhhcccHHHHHHHHHhhc
Confidence 8888887653 367788888999999999999999999988753 33222221 12222245
Q ss_pred cchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHhhhhhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 007517 241 ASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFASKDIVMWNSIISGYAQYGLGEKSLKVFHEMF 320 (600)
Q Consensus 241 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 320 (600)
|++++|...+..+.+..... ++..+|..+...|...|++++|+..|+++.
T Consensus 195 ~~~~~A~~~~~~a~~~~p~~------------------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 244 (368)
T 1fch_A 195 SLFLEVKELFLAAVRLDPTS------------------------------IDPDVQCGLGVLFNLSGEYDKAVDCFTAAL 244 (368)
T ss_dssp HHHHHHHHHHHHHHHHSTTS------------------------------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcCc------------------------------ccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 55555555555555443111 023444445555555555555555555554
Q ss_pred HCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-----
Q 007517 321 SSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM-PFEP----- 394 (600)
Q Consensus 321 ~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p----- 394 (600)
+.. +.+..++..+...+...|++++|...|+.+.+.. +.+...+..+..+|.+.|++++|.+.++++ ...|
T Consensus 245 ~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 321 (368)
T 1fch_A 245 SVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ--PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGP 321 (368)
T ss_dssp HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC---
T ss_pred HhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCc
Confidence 431 2223444555555555555555555555554421 233455555555555555555555555544 1111
Q ss_pred -------CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 007517 395 -------DAIIWGSLLGACRTHMKLDLAEVAAKKL 422 (600)
Q Consensus 395 -------~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 422 (600)
...+|..+..++...|+.++|..++++.
T Consensus 322 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 356 (368)
T 1fch_A 322 RGEGGAMSENIWSTLRLALSMLGQSDAYGAADARD 356 (368)
T ss_dssp ---CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTC
T ss_pred cccccchhhHHHHHHHHHHHHhCChHhHHHhHHHH
Confidence 1455666666666666666666555543
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.74 E-value=1.8e-14 Score=158.46 Aligned_cols=369 Identities=11% Similarity=0.116 Sum_probs=236.6
Q ss_pred HHHHHHHHhCCChHHHHHHHhhCC-CCC-----cchHHHHHHHHHcCCCHHHHHHHHccCCCCCcchHHHHHHHHHhcCC
Q 007517 10 TAMVRGYVEEGMITEAGTLFWQMP-EKN-----VVSWTVMLGGFIRDSRIDDARRLFDMMPEKDVVAQTNMVLGYCQDGR 83 (600)
Q Consensus 10 ~~ll~~~~~~g~~~~A~~~~~~m~-~~~-----~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~ 83 (600)
...+++|...|.+.+|+++++++. .++ ...-+.|+.+..+. +.....+...+... .....+...+...|.
T Consensus 989 s~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~---~d~~eIA~Iai~lgl 1064 (1630)
T 1xi4_A 989 SVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDN---YDAPDIANIAISNEL 1064 (1630)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhh---ccHHHHHHHHHhCCC
Confidence 567889999999999999999988 322 24555566555554 33444444433332 224456677777888
Q ss_pred hHHHHHHHhhCCCCCcccHHHHHHHHHhCCChHHHHHHHhhcCCCCcchHHHHHHHHhcCCChHHHHHHHhhCCCCCccc
Q 007517 84 VDEGREIFDEMPKKNVISWTTMISGYVNNNRIDVARKLFEVMPEKNEVSWTAMLMGYTQCGRIQDAWELFKAMPMKSVVA 163 (600)
Q Consensus 84 ~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 163 (600)
+++|..+|++... ...+.+.++. ..+++++|.++.++. -++.+|..+..++...|++++|...|.+. .|...
T Consensus 1065 yEEAf~IYkKa~~-~~~A~~VLie---~i~nldrAiE~Aerv--n~p~vWsqLAKAql~~G~~kEAIdsYiKA--dD~sa 1136 (1630)
T 1xi4_A 1065 FEEAFAIFRKFDV-NTSAVQVLIE---HIGNLDRAYEFAERC--NEPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSS 1136 (1630)
T ss_pred HHHHHHHHHHcCC-HHHHHHHHHH---HHhhHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCHHHHHHHHHhc--CChHH
Confidence 8888888887642 2222233332 566777777777755 33566777888888888888888777554 56666
Q ss_pred hhHHHHHHHhcCCHHHHHHHHHhccc--CChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCchhHhhHHHHHhhhc
Q 007517 164 SNSMILGLGQNGEVQKARVVFDQMRE--KDDATWSGMIKVYERKGYELEVIDLFTLMQKEGVRVNFPSLISVLSVCASLA 241 (600)
Q Consensus 164 ~~~li~~~~~~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~ 241 (600)
|..++..+.+.|++++|.+.+....+ ++....+.++.+|++.+++++. +-| .+ .|+...+..+...|...|
T Consensus 1137 y~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleel-e~f---I~---~~n~ad~~~iGd~le~eg 1209 (1630)
T 1xi4_A 1137 YMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAEL-EEF---IN---GPNNAHIQQVGDRCYDEK 1209 (1630)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHH-HHH---Hh---CCCHHHHHHHHHHHHhcC
Confidence 67778888888888888888766543 2333344577777777777743 333 11 345556666777777888
Q ss_pred chHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHhhhhhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 007517 242 SLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFASKDIVMWNSIISGYAQYGLGEKSLKVFHEMFS 321 (600)
Q Consensus 242 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 321 (600)
++++|..+|..+ ..|..+...|.+.|++++|.+.+++. .+..+|..+-.+|...|++..|......
T Consensus 1210 ~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA--~n~~aWkev~~acve~~Ef~LA~~cgl~--- 1275 (1630)
T 1xi4_A 1210 MYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA--NSTRTWKEVCFACVDGKEFRLAQMCGLH--- 1275 (1630)
T ss_pred CHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh--CCHHHHHHHHHHHhhhhHHHHHHHHHHh---
Confidence 888888887764 36777888888888888888887766 4557777777777777777666665443
Q ss_pred CCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCC-ChHHHHHHHHHHhh--cCCHHHHHHHHHhC-CCCC---
Q 007517 322 SGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEP-KTEHYACMVDLLGR--AGQVEDAMKLIEAM-PFEP--- 394 (600)
Q Consensus 322 ~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~--~g~~~~A~~~~~~m-~~~p--- 394 (600)
+..+...+..++..|...|.+++|..+++.... +.+ ....|+-|..+|.+ -+++.++.++|..- .+.|
T Consensus 1276 --Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~---LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r 1350 (1630)
T 1xi4_A 1276 --IVVHADELEELINYYQDRGYFEELITMLEAALG---LERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLR 1350 (1630)
T ss_pred --hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc---cChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhH
Confidence 233444455666677777777777777765543 222 24445555555554 34555555555543 3222
Q ss_pred ---CHHHHHHHHHHHHHcCCHHHHH
Q 007517 395 ---DAIIWGSLLGACRTHMKLDLAE 416 (600)
Q Consensus 395 ---~~~~~~~ll~~~~~~g~~~~a~ 416 (600)
+...|.-+.-.|.+.|+++.|.
T Consensus 1351 ~~e~~~lW~elv~LY~~~~e~dnA~ 1375 (1630)
T 1xi4_A 1351 AAEQAHLWAELVFLYDKYEEYDNAI 1375 (1630)
T ss_pred HHHHHHHHHHHHHHHHhcccHHHHH
Confidence 3455777777777777777666
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.73 E-value=2.4e-15 Score=145.39 Aligned_cols=268 Identities=10% Similarity=-0.017 Sum_probs=206.7
Q ss_pred HHHhcCCHHHHHHHHHhcccCCh----hhHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCchhHhhHHHHHhhhcchHH
Q 007517 170 GLGQNGEVQKARVVFDQMREKDD----ATWSGMIKVYERKGYELEVIDLFTLMQKEGVRVNFPSLISVLSVCASLASLDH 245 (600)
Q Consensus 170 ~~~~~g~~~~A~~~f~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~ 245 (600)
-....|++..|+..+++....++ .....+..+|...|++++|+..++. .-+|+..++..+...+...++.+.
T Consensus 8 ~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~~ 83 (291)
T 3mkr_A 8 NAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRDA 83 (291)
T ss_dssp HHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHHH
T ss_pred HHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHHH
Confidence 34556788888887777655432 2345567788888888888876644 134566677777777788888888
Q ss_pred HHHHHHHHHHcCC-CCchhhHHHHHHHHHHcCCHHHHHhhhhhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 007517 246 GRQVHAQLVRCQF-DVDVYVASVLITMYIKCGELVKGKLIFDNFASKDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGV 324 (600)
Q Consensus 246 a~~~~~~~~~~~~-~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 324 (600)
|.+.++.+...+. +.+...+..+...|.+.|++++|.+.|++ ..+...+..++..|.+.|++++|.+.|+++.+.
T Consensus 84 A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~-- 159 (291)
T 3mkr_A 84 IVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ-- 159 (291)
T ss_dssp HHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--
Confidence 8888888877664 44566777788999999999999999998 568889999999999999999999999999885
Q ss_pred CCCHHHH---HHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHH
Q 007517 325 MPDDVTL---VGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM-PFEP-DAIIW 399 (600)
Q Consensus 325 ~p~~~t~---~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~ 399 (600)
.|+.... ...+..+...|++++|..+|+++.+.. +.+...++.+..+|.+.|++++|.+.+++. ...| +..+|
T Consensus 160 ~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~--p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l 237 (291)
T 3mkr_A 160 DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC--SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETL 237 (291)
T ss_dssp CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 4665322 122344445689999999999999863 568899999999999999999999999987 3345 67789
Q ss_pred HHHHHHHHHcCCHHH-HHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHH
Q 007517 400 GSLLGACRTHMKLDL-AEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAE 451 (600)
Q Consensus 400 ~~ll~~~~~~g~~~~-a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 451 (600)
..++..+...|+.++ +.++++++++++|+++.. .+...+.+.++++..
T Consensus 238 ~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~----~d~~~~~~~fd~~~~ 286 (291)
T 3mkr_A 238 INLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFI----KEYRAKENDFDRLVL 286 (291)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHH----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHH----HHHHHHHHHHHHHHH
Confidence 999999999999875 678999999999998643 344455555555543
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.9e-16 Score=158.94 Aligned_cols=257 Identities=9% Similarity=-0.041 Sum_probs=170.7
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCccCchhHhhHHHHHhhhcchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHH
Q 007517 195 WSGMIKVYERKGYELEVIDLFTLMQKEGVRVNFPSLISVLSVCASLASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIK 274 (600)
Q Consensus 195 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~ 274 (600)
|..+...+.+.|++++|+..|+++.+.. +.+..++..+...+...|++++|...+..+.+.. +.+..++..+...|.+
T Consensus 68 ~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~ 145 (365)
T 4eqf_A 68 AFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSYTN 145 (365)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHc
Confidence 4444444444444444444444444332 1223334444444444444444444444444432 2334555555666666
Q ss_pred cCCHHHHHhhhhhcCCC-------------CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHhc
Q 007517 275 CGELVKGKLIFDNFASK-------------DIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVM-PDDVTLVGVLSACSY 340 (600)
Q Consensus 275 ~g~~~~A~~~~~~~~~~-------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~t~~~ll~a~~~ 340 (600)
.|++++|...|+++... ....+..+...|...|++++|++.|+++.+.... ++..++..+...+..
T Consensus 146 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~ 225 (365)
T 4eqf_A 146 TSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHL 225 (365)
T ss_dssp TTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHH
Confidence 66666666666554431 1223445577888899999999999999875311 156788888889999
Q ss_pred cCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHH
Q 007517 341 TGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM-PFEP-DAIIWGSLLGACRTHMKLDLAEVA 418 (600)
Q Consensus 341 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~ 418 (600)
.|++++|.+.|+.+.+.. +.+...|..+..+|.+.|++++|.+.|+++ ...| +..+|..+...|...|++++|...
T Consensus 226 ~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 303 (365)
T 4eqf_A 226 SGEFNRAIDAFNAALTVR--PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSN 303 (365)
T ss_dssp HTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHH
Confidence 999999999999988752 456889999999999999999999999987 3344 488899999999999999999999
Q ss_pred HHHHhccCCC------------CCchHHHHHHHHHhcCCchHHHHHHHH
Q 007517 419 AKKLLQLEPK------------NAGPYILLSNIYASQGRFHDVAELRKN 455 (600)
Q Consensus 419 ~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~a~~~~~~ 455 (600)
+++++++.|+ +...+..++.++...|+.+.+.++.++
T Consensus 304 ~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 304 FLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 9999998776 356788999999999999988876653
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.72 E-value=9.4e-16 Score=159.62 Aligned_cols=322 Identities=12% Similarity=0.037 Sum_probs=180.5
Q ss_pred hHHHHHHHHhcCCChHHHHHHHhhCC--------C---CCccchhHHHHHHHhc--CCHHHHHHHHHhccc--C-ChhhH
Q 007517 132 SWTAMLMGYTQCGRIQDAWELFKAMP--------M---KSVVASNSMILGLGQN--GEVQKARVVFDQMRE--K-DDATW 195 (600)
Q Consensus 132 t~~~ll~~~~~~g~~~~a~~~~~~~~--------~---~~~~~~~~li~~~~~~--g~~~~A~~~f~~~~~--~-~~~~~ 195 (600)
+|..+..+|...|++++|...++++. + ....++..+..++.+. +++++|...|++..+ | ++..+
T Consensus 96 ~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~ 175 (472)
T 4g1t_A 96 TWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFT 175 (472)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHH
Confidence 44455555555555555555544433 0 0112233333333333 346677777766543 2 34444
Q ss_pred HHHHHH---HHHcCChHHHHHHHHHHHHcCCccC-chhHhhHHHHHh----hhcchHHHHHHHHHHHHcCCCCchhhHHH
Q 007517 196 SGMIKV---YERKGYELEVIDLFTLMQKEGVRVN-FPSLISVLSVCA----SLASLDHGRQVHAQLVRCQFDVDVYVASV 267 (600)
Q Consensus 196 ~~li~~---~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 267 (600)
..+... +...++.++|++.|++..+. .|+ ..++..+...+. ..++.++|.+.+....+.. +.+..++..
T Consensus 176 ~~~~~~~~~l~~~~~~~~al~~~~~al~l--~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~ 252 (472)
T 4g1t_A 176 SGLAIASYRLDNWPPSQNAIDPLRQAIRL--NPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRS 252 (472)
T ss_dssp HHHHHHHHHHHHSCCCCCTHHHHHHHHHH--CSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHH
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHhhc--CCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHH
Confidence 444433 23446666777777766654 233 333333333333 2345667777777766654 445566677
Q ss_pred HHHHHHHcCCHHHHHhhhhhcCC---CCHHHHHHHHHHHHh-------------------cCChHHHHHHHHHHHHCCCC
Q 007517 268 LITMYIKCGELVKGKLIFDNFAS---KDIVMWNSIISGYAQ-------------------YGLGEKSLKVFHEMFSSGVM 325 (600)
Q Consensus 268 li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~-------------------~g~~~~A~~~~~~m~~~g~~ 325 (600)
+...|.+.|++++|...|++..+ .+..+|..+...|.. .+..++|+..|++..+.. +
T Consensus 253 lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~ 331 (472)
T 4g1t_A 253 AAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-D 331 (472)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-T
T ss_pred HHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-C
Confidence 77777777777777777776543 345555555554432 233567888888877642 2
Q ss_pred CCHHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChH----HHHHHHH-HHhhcCCHHHHHHHHHhC-CCCCCHHHH
Q 007517 326 PDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTE----HYACMVD-LLGRAGQVEDAMKLIEAM-PFEPDAIIW 399 (600)
Q Consensus 326 p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~----~~~~li~-~~~~~g~~~~A~~~~~~m-~~~p~~~~~ 399 (600)
.+..++..+...+...|++++|.+.|++..+. .|+.. .+..+.. .+...|+.++|.+.|++. .+.|+...+
T Consensus 332 ~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~ 408 (472)
T 4g1t_A 332 NLFRVCSILASLHALADQYEEAEYYFQKEFSK---ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREK 408 (472)
T ss_dssp TTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHS---CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHH
T ss_pred chhhhhhhHHHHHHHhccHHHHHHHHHHHHhc---CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHH
Confidence 33456777888899999999999999988764 23322 2333333 235678999999999876 556665443
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCCccCCceeE
Q 007517 400 GSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMRKRNVIKPPGCSW 469 (600)
Q Consensus 400 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~ 469 (600)
... ...+..++++.++.+|+++.+|..|+.+|...|++++|.+.+++..+.+-..+...+|
T Consensus 409 ~~~---------~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~ 469 (472)
T 4g1t_A 409 EKM---------KDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSW 469 (472)
T ss_dssp HHH---------HHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC----------------------
T ss_pred HHH---------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhc
Confidence 322 3445677888889999999999999999999999999999999998876443333444
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.72 E-value=3.4e-16 Score=157.09 Aligned_cols=256 Identities=10% Similarity=0.004 Sum_probs=134.5
Q ss_pred chHHHHHHHHhcCCChHHHHHHHhhCC---CCCccchhHHHHHHHhcCCHHHHHHHHHhccc---CChhhHHHHHHHHHH
Q 007517 131 VSWTAMLMGYTQCGRIQDAWELFKAMP---MKSVVASNSMILGLGQNGEVQKARVVFDQMRE---KDDATWSGMIKVYER 204 (600)
Q Consensus 131 ~t~~~ll~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~ 204 (600)
..+..+...+.+.|++++|...++.+. +.+..++..+...|.+.|++++|...|++..+ .+..+|..+...|..
T Consensus 66 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 145 (365)
T 4eqf_A 66 PGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTN 145 (365)
T ss_dssp TTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHc
Confidence 345555556666666666666666555 44455666667777777777777777776653 256677777777777
Q ss_pred cCChHHHHHHHHHHHHcCCccCc-h----------hHhhHHHHHhhhcchHHHHHHHHHHHHcCCCCchhhHHHHHHHHH
Q 007517 205 KGYELEVIDLFTLMQKEGVRVNF-P----------SLISVLSVCASLASLDHGRQVHAQLVRCQFDVDVYVASVLITMYI 273 (600)
Q Consensus 205 ~g~~~~A~~~~~~m~~~g~~p~~-~----------t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~ 273 (600)
.|++++|+..|+++.+.. |+. . .+..+...+...|++++|...+..+.+.....
T Consensus 146 ~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~------------- 210 (365)
T 4eqf_A 146 TSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDM------------- 210 (365)
T ss_dssp TTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSS-------------
T ss_pred cccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCc-------------
Confidence 778888877777776642 221 1 11122444455555555555555555543110
Q ss_pred HcCCHHHHHhhhhhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHH
Q 007517 274 KCGELVKGKLIFDNFASKDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFES 353 (600)
Q Consensus 274 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 353 (600)
.+..+|..+...|...|++++|++.|+++.+.. +.+..++..+..++...|++++|...|++
T Consensus 211 -----------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 272 (365)
T 4eqf_A 211 -----------------IDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTR 272 (365)
T ss_dssp -----------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred -----------------cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 033444444444445555555555555544421 22234444455555555555555555555
Q ss_pred hHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-------------CHHHHHHHHHHHHHcCCHHHHHHHH
Q 007517 354 MKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM-PFEP-------------DAIIWGSLLGACRTHMKLDLAEVAA 419 (600)
Q Consensus 354 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-------------~~~~~~~ll~~~~~~g~~~~a~~~~ 419 (600)
+.+.. +.+...+..+..+|.+.|++++|.+.|+++ ...| +..+|..+..++...|+.+.+..+.
T Consensus 273 al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 350 (365)
T 4eqf_A 273 ALEIQ--PGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAAN 350 (365)
T ss_dssp HHHHC--TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHhcC--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 44421 223445555555555555555555555544 0011 2455666666666666666665555
Q ss_pred HH
Q 007517 420 KK 421 (600)
Q Consensus 420 ~~ 421 (600)
++
T Consensus 351 ~~ 352 (365)
T 4eqf_A 351 LG 352 (365)
T ss_dssp TT
T ss_pred Hh
Confidence 44
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.1e-15 Score=147.82 Aligned_cols=246 Identities=9% Similarity=0.035 Sum_probs=202.3
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCccCc--hhHhhHHHHHhhhcchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcC
Q 007517 199 IKVYERKGYELEVIDLFTLMQKEGVRVNF--PSLISVLSVCASLASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCG 276 (600)
Q Consensus 199 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g 276 (600)
|+-....|++..|+..+++... ..|+. .....+..++...|+++.|...++. .-+|+...+..+...|...|
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~--~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~ 79 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKP--SSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHS 79 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCC--CSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCST
T ss_pred HHHHHHHHHHHHHHHHHHhccc--CCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCC
Confidence 4556678999999998877643 33443 3456678899999999999875543 24667788889999999999
Q ss_pred CHHHHHhhhhhcC----CC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHH
Q 007517 277 ELVKGKLIFDNFA----SK-DIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIF 351 (600)
Q Consensus 277 ~~~~A~~~~~~~~----~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 351 (600)
+.++|.+.++++. .| +...+..+...|.+.|++++|++.+++ ..+...+..+...+.+.|++++|.+.+
T Consensus 80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l 153 (291)
T 3mkr_A 80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKEL 153 (291)
T ss_dssp THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999999999863 23 677788888999999999999999987 456778888889999999999999999
Q ss_pred HHhHhcCCCCCChHH---HHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Q 007517 352 ESMKSKYLVEPKTEH---YACMVDLLGRAGQVEDAMKLIEAM--PFEPDAIIWGSLLGACRTHMKLDLAEVAAKKLLQLE 426 (600)
Q Consensus 352 ~~~~~~~~~~p~~~~---~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 426 (600)
+.+.+. .|+... ...++..+...|++++|..+|+++ ..+.+...|+.+..++...|++++|+..++++++.+
T Consensus 154 ~~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~ 230 (291)
T 3mkr_A 154 KKMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD 230 (291)
T ss_dssp HHHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999875 355321 233445556679999999999998 224578899999999999999999999999999999
Q ss_pred CCCCchHHHHHHHHHhcCCchH-HHHHHHHHHhC
Q 007517 427 PKNAGPYILLSNIYASQGRFHD-VAELRKNMRKR 459 (600)
Q Consensus 427 p~~~~~~~~l~~~~~~~g~~~~-a~~~~~~m~~~ 459 (600)
|+++.++..++.++...|++++ +.++++++.+.
T Consensus 231 p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 231 SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 9999999999999999999986 57888888764
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.71 E-value=5.7e-16 Score=152.52 Aligned_cols=272 Identities=8% Similarity=0.006 Sum_probs=187.0
Q ss_pred cchhHHHHHHHhcCCHHHHHHHHHhccc---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCchhHhhHHHHHh
Q 007517 162 VASNSMILGLGQNGEVQKARVVFDQMRE---KDDATWSGMIKVYERKGYELEVIDLFTLMQKEGVRVNFPSLISVLSVCA 238 (600)
Q Consensus 162 ~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 238 (600)
..+..+...+...|++++|..+|+++.+ .+...|..+...+...|++++|+..|+++.... +.+..++..+...+.
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~ 100 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHT 100 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHH
Confidence 3445556666667777777776666542 245566666666666677777766666666542 223344555555555
Q ss_pred hhcchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHhhhhhcCCCCHHHHHHHHH--HHHhcCChHHHHHHH
Q 007517 239 SLASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFASKDIVMWNSIIS--GYAQYGLGEKSLKVF 316 (600)
Q Consensus 239 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~--~~~~~g~~~~A~~~~ 316 (600)
..|++++|...+..+.+... .+...+..+.... ++......+.. .+...|++++|++.+
T Consensus 101 ~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 161 (327)
T 3cv0_A 101 NEHNANAALASLRAWLLSQP-QYEQLGSVNLQAD------------------VDIDDLNVQSEDFFFAAPNEYRECRTLL 161 (327)
T ss_dssp HTTCHHHHHHHHHHHHHTST-TTTTC--------------------------------------CCTTSHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCC-ccHHHHHHHhHHH------------------HHHHHHHHHHHhHHHHHcccHHHHHHHH
Confidence 55555555555555554421 1111111110000 00011111112 266778899999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-
Q 007517 317 HEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM-PFEP- 394 (600)
Q Consensus 317 ~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p- 394 (600)
+++.+.. +.+...+..+...+...|++++|.+.++.+.+.. +.+...+..+...|.+.|++++|.+.++++ ...|
T Consensus 162 ~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~ 238 (327)
T 3cv0_A 162 HAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR--PDDAQLWNKLGATLANGNRPQEALDAYNRALDINPG 238 (327)
T ss_dssp HHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 9988753 3356788888889999999999999999988752 446888999999999999999999999987 3233
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC------------CCchHHHHHHHHHhcCCchHHHHHHHHH
Q 007517 395 DAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPK------------NAGPYILLSNIYASQGRFHDVAELRKNM 456 (600)
Q Consensus 395 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~a~~~~~~m 456 (600)
+...|..+...+...|++++|...++++++..|+ ++..+..++.+|...|++++|.+++++.
T Consensus 239 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 239 YVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 5788999999999999999999999999999998 6788999999999999999999887643
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.67 E-value=5.2e-17 Score=173.06 Aligned_cols=132 Identities=13% Similarity=0.142 Sum_probs=113.5
Q ss_pred CCCchhhHHHHHHHHHHcCCHHHHHhhhhhcC-------CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH
Q 007517 258 FDVDVYVASVLITMYIKCGELVKGKLIFDNFA-------SKDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVT 330 (600)
Q Consensus 258 ~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~-------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 330 (600)
...-..+||+||++|+++|++++|.++|++|. .||++|||+||.||++.|+.++|.++|++|.+.|+.||.+|
T Consensus 123 ~~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvT 202 (1134)
T 3spa_A 123 LSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLS 202 (1134)
T ss_dssp CCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHH
Confidence 34456789999999999999999999997653 47999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCH-HHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC
Q 007517 331 LVGVLSACSYTGKV-KEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM 390 (600)
Q Consensus 331 ~~~ll~a~~~~g~~-~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 390 (600)
|+++|.++++.|+. ++|.++|++|.++ |+.||..+|++++....|.+-++...++...+
T Consensus 203 YntLI~glcK~G~~~e~A~~Ll~EM~~k-G~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f 262 (1134)
T 3spa_A 203 YAAALQCMGRQDQDAGTIERCLEQMSQE-GLKLQALFTAVLLSEEDRATVLKAVHKVKPTF 262 (1134)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHH-TCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCC
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHc-CCCCChhhcccccChhhHHHHHHHHHHhCccc
Confidence 99999999999874 7889999999986 89999999999998888776666555554433
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.66 E-value=1.4e-14 Score=142.37 Aligned_cols=220 Identities=12% Similarity=0.047 Sum_probs=120.6
Q ss_pred HHHHHHHHhcCCChHHHHHHHhhCC---CCCccchhHHHHHHHhcCCHHHHHHHHHhccc---CChhhHHHHHHHHHHcC
Q 007517 133 WTAMLMGYTQCGRIQDAWELFKAMP---MKSVVASNSMILGLGQNGEVQKARVVFDQMRE---KDDATWSGMIKVYERKG 206 (600)
Q Consensus 133 ~~~ll~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g 206 (600)
+..+...+...|++++|..+++.+. +.+..++..+...|.+.|++++|...|+++.+ .+..+|..+...|...|
T Consensus 24 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~ 103 (327)
T 3cv0_A 24 PMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH 103 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcC
Confidence 3344444444444554444444444 33344455556666666666666666666543 25667777778888888
Q ss_pred ChHHHHHHHHHHHHcCCccCchhHhhHH--------------H--HHhhhcchHHHHHHHHHHHHcCCCCchhhHHHHHH
Q 007517 207 YELEVIDLFTLMQKEGVRVNFPSLISVL--------------S--VCASLASLDHGRQVHAQLVRCQFDVDVYVASVLIT 270 (600)
Q Consensus 207 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll--------------~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 270 (600)
++++|+..|+++.... |+.......+ . .+...|++++|...+..+.+.. +.+..++..+..
T Consensus 104 ~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 180 (327)
T 3cv0_A 104 NANAALASLRAWLLSQ--PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGV 180 (327)
T ss_dssp CHHHHHHHHHHHHHTS--TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC--CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence 8888888888877642 3322222211 2 2556667777777777766654 334555555666
Q ss_pred HHHHcCCHHHHHhhhhhcCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHH
Q 007517 271 MYIKCGELVKGKLIFDNFAS---KDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEG 347 (600)
Q Consensus 271 ~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 347 (600)
.|.+.|++++|...|+++.. .+..+|..+...|...|++++|+..|+++.+.. +.+..++..+..++...|++++|
T Consensus 181 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A 259 (327)
T 3cv0_A 181 LYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYDLA 259 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHHHH
Confidence 66666666666655554432 234555555555555555555555555554431 12233444444555555555555
Q ss_pred HHHHHHhHh
Q 007517 348 REIFESMKS 356 (600)
Q Consensus 348 ~~~~~~~~~ 356 (600)
.+.++.+.+
T Consensus 260 ~~~~~~a~~ 268 (327)
T 3cv0_A 260 AKQLVRAIY 268 (327)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555554443
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.9e-14 Score=149.74 Aligned_cols=371 Identities=11% Similarity=-0.019 Sum_probs=203.5
Q ss_pred cchHHHHHHHHHcCCCHHHHHHHHccCC------------CCCcchHHHHHHHHHhcCChHHHHHHHhhCCC--------
Q 007517 37 VVSWTVMLGGFIRDSRIDDARRLFDMMP------------EKDVVAQTNMVLGYCQDGRVDEGREIFDEMPK-------- 96 (600)
Q Consensus 37 ~~~~~~ll~~~~~~g~~~~A~~~~~~m~------------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-------- 96 (600)
...||.|...+...|++++|++.|++.. .....+|+.+...|...|++++|...|++..+
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 4567888888888888888888876643 12345677788888888888888777765431
Q ss_pred ---CCcccHHHHHHHHHh--CCChHHHHHHHhhcCC--CCcc-hHHHHHHH---HhcCCChHHHHHHHhhCC---CCCcc
Q 007517 97 ---KNVISWTTMISGYVN--NNRIDVARKLFEVMPE--KNEV-SWTAMLMG---YTQCGRIQDAWELFKAMP---MKSVV 162 (600)
Q Consensus 97 ---~~~~~~~~li~~~~~--~g~~~~A~~~~~~m~~--p~~~-t~~~ll~~---~~~~g~~~~a~~~~~~~~---~~~~~ 162 (600)
....+++.+..++.. .+++++|++.|++..+ |+.. .+..+..+ +...++.++|.+.+++.. +.+..
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~ 210 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQY 210 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHH
T ss_pred cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchH
Confidence 122345544444444 3457788888887766 5533 33333333 344566677777776665 34444
Q ss_pred chhHHHHHHHh----cCCHHHHHHHHHhccc---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCc-hhHhhHH
Q 007517 163 ASNSMILGLGQ----NGEVQKARVVFDQMRE---KDDATWSGMIKVYERKGYELEVIDLFTLMQKEGVRVNF-PSLISVL 234 (600)
Q Consensus 163 ~~~~li~~~~~----~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll 234 (600)
++..+...+.. .|+.++|.+.+++... .+..++..+...|...|++++|+..|++..+. .|+. .++..+.
T Consensus 211 ~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg 288 (472)
T 4g1t_A 211 LKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEY--IPNNAYLHCQIG 288 (472)
T ss_dssp HHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHh--CCChHHHHHHHH
Confidence 44444444443 3566777777776542 35566777777788888888888888777664 3433 2333333
Q ss_pred HHHhhhcchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHhhhhhcCC---CCHHHHHHHHHHHHhcCChHH
Q 007517 235 SVCASLASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFAS---KDIVMWNSIISGYAQYGLGEK 311 (600)
Q Consensus 235 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~ 311 (600)
..+...+.... ... ...........+..+.|...|+.... .+..+|..+...|...|++++
T Consensus 289 ~~y~~~~~~~~---------~~~-------~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~ 352 (472)
T 4g1t_A 289 CCYRAKVFQVM---------NLR-------ENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEE 352 (472)
T ss_dssp HHHHHHHHHHH---------HC-------------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHhh---------hHH-------HHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHH
Confidence 32221111000 000 00000111112335667777765533 455678888999999999999
Q ss_pred HHHHHHHHHHCCCCCCHH--HHHHHHH-HHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHH
Q 007517 312 SLKVFHEMFSSGVMPDDV--TLVGVLS-ACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIE 388 (600)
Q Consensus 312 A~~~~~~m~~~g~~p~~~--t~~~ll~-a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 388 (600)
|++.|++..+....|... .+..+.. .....|+.++|...|.+..+ +.|+....... .+.+.++++
T Consensus 353 A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~---i~~~~~~~~~~---------~~~l~~~~~ 420 (472)
T 4g1t_A 353 AEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK---INQKSREKEKM---------KDKLQKIAK 420 (472)
T ss_dssp HHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH---SCCCCHHHHHH---------HHHHHHHHH
T ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCcccHHHHHH---------HHHHHHHHH
Confidence 999999988764333321 1222221 23567899999999998876 34554332222 223333443
Q ss_pred hC-CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHH
Q 007517 389 AM-PF-EPDAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLS 437 (600)
Q Consensus 389 ~m-~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 437 (600)
.. .. +.+..+|..|...+...|++++|+..+++++++.|.+|.+...++
T Consensus 421 ~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 421 MRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG 471 (472)
T ss_dssp HHHHHCC-CTTHHHHHHHHHHHHHHCC------------------------
T ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence 33 11 346778999999999999999999999999999998877665543
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.64 E-value=2e-16 Score=168.65 Aligned_cols=147 Identities=10% Similarity=0.067 Sum_probs=126.3
Q ss_pred ccchhHHHHHHHhcCCHHHHHHHHHhcc-------cCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCchhHhhH
Q 007517 161 VVASNSMILGLGQNGEVQKARVVFDQMR-------EKDDATWSGMIKVYERKGYELEVIDLFTLMQKEGVRVNFPSLISV 233 (600)
Q Consensus 161 ~~~~~~li~~~~~~g~~~~A~~~f~~~~-------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 233 (600)
..+||+||++|+++|++++|.++|++|. .||++|||+||.+|++.|+.++|+++|++|...|+.||.+||+++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 3579999999999999999999998764 479999999999999999999999999999999999999999999
Q ss_pred HHHHhhhcch-HHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHhhhhhcCCC-----CHHHHHHHHHHHHhcC
Q 007517 234 LSVCASLASL-DHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFASK-----DIVMWNSIISGYAQYG 307 (600)
Q Consensus 234 l~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~g 307 (600)
|.++++.|.. +.|.+++++|.+.|+.||..+|++++..+.+.+-++...+++..+..+ .+.+.+.|.+.|.+.+
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~s~d~ 286 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDG 286 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHHCCCS
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHHHHccCC
Confidence 9999999985 789999999999999999999999999888887777777776655432 1334444555565544
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.60 E-value=4.2e-14 Score=130.46 Aligned_cols=194 Identities=12% Similarity=0.045 Sum_probs=154.0
Q ss_pred CCchhhHHHHHHHHHHcCCHHHHHhhhhhcCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHH
Q 007517 259 DVDVYVASVLITMYIKCGELVKGKLIFDNFAS---KDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPD-DVTLVGV 334 (600)
Q Consensus 259 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~l 334 (600)
|++...+..+...+.+.|++++|...|++... .+...|..+...+.+.|++++|+..|++..+. .|+ ...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVAR--TPRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHH
Confidence 45666777888888888999999988887654 46788888999999999999999999998875 454 4577777
Q ss_pred HHHHhcc-----------CCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHH
Q 007517 335 LSACSYT-----------GKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM-PFEPDAIIWGSL 402 (600)
Q Consensus 335 l~a~~~~-----------g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~l 402 (600)
..++... |++++|...+++..+.. +.+...+..+..+|...|++++|.+.|++. .+..+...|..+
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l 157 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN--PRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHH
Confidence 7888888 99999999999998752 345788999999999999999999999987 212788899999
Q ss_pred HHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHH
Q 007517 403 LGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNM 456 (600)
Q Consensus 403 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 456 (600)
..++...|++++|...++++++++|+++..+..++.++...|++++|.+.+++.
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999888764
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.60 E-value=5.7e-14 Score=132.94 Aligned_cols=225 Identities=12% Similarity=0.032 Sum_probs=164.3
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCchhHhhHHHHHhhhcchHHHHHHHHHHHHcCCCCchhhHHHHHHHH
Q 007517 193 ATWSGMIKVYERKGYELEVIDLFTLMQKEGVRVNFPSLISVLSVCASLASLDHGRQVHAQLVRCQFDVDVYVASVLITMY 272 (600)
Q Consensus 193 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y 272 (600)
..|..+...+...|++++|+..|++..+.. .+...+..+..++...|++++|...+..+.+.....
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~------------ 71 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREM------------ 71 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT------------
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCccc------------
Confidence 355666666666666666666666666554 444444444444444444444444444443321000
Q ss_pred HHcCCHHHHHhhhhhcCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHH
Q 007517 273 IKCGELVKGKLIFDNFASKD----IVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGR 348 (600)
Q Consensus 273 ~~~g~~~~A~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 348 (600)
.++ ..+|..+...|...|++++|++.|++..+. .|+.. .+...|++++|.
T Consensus 72 -----------------~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~-------~~~~~~~~~~a~ 125 (258)
T 3uq3_A 72 -----------------RADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTE--HRTAD-------ILTKLRNAEKEL 125 (258)
T ss_dssp -----------------TCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHH-------HHHHHHHHHHHH
T ss_pred -----------------ccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--CchhH-------HHHHHhHHHHHH
Confidence 001 467778888888888888999988888874 45533 345567889999
Q ss_pred HHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Q 007517 349 EIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM-PF-EPDAIIWGSLLGACRTHMKLDLAEVAAKKLLQLE 426 (600)
Q Consensus 349 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 426 (600)
+.++.+.... +.+...+..+...|.+.|++++|.+.+++. .. +.+...|..+...+...|++++|...++++++..
T Consensus 126 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 203 (258)
T 3uq3_A 126 KKAEAEAYVN--PEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD 203 (258)
T ss_dssp HHHHHHHHCC--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcC--cchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 9999887642 335678888999999999999999999887 22 3367889999999999999999999999999999
Q ss_pred CCCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007517 427 PKNAGPYILLSNIYASQGRFHDVAELRKNMRKR 459 (600)
Q Consensus 427 p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 459 (600)
|+++..+..++.+|...|++++|.+.+++..+.
T Consensus 204 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 204 PNFVRAYIRKATAQIAVKEYASALETLDAARTK 236 (258)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 999999999999999999999999999988754
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.58 E-value=6.4e-14 Score=132.56 Aligned_cols=232 Identities=10% Similarity=-0.032 Sum_probs=158.7
Q ss_pred cchhHHHHHHHhcCCHHHHHHHHHhccc--CChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCc--cC----chhHhhH
Q 007517 162 VASNSMILGLGQNGEVQKARVVFDQMRE--KDDATWSGMIKVYERKGYELEVIDLFTLMQKEGVR--VN----FPSLISV 233 (600)
Q Consensus 162 ~~~~~li~~~~~~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p~----~~t~~~l 233 (600)
..+..+...|...|++++|...|++..+ .+...|..+...|...|++++|+..|++....... |+ ..++..+
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l 85 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARI 85 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHH
Confidence 4567788899999999999999988753 57788999999999999999999999998774211 11 2445555
Q ss_pred HHHHhhhcchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHhhhhhcCCCCHHHHHHHHHHHHhcCChHHHH
Q 007517 234 LSVCASLASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFASKDIVMWNSIISGYAQYGLGEKSL 313 (600)
Q Consensus 234 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 313 (600)
...+...|++++|...+..+.+.. |+ ...+...|++++|+
T Consensus 86 ~~~~~~~~~~~~A~~~~~~a~~~~--~~--------------------------------------~~~~~~~~~~~~a~ 125 (258)
T 3uq3_A 86 GNAYHKLGDLKKTIEYYQKSLTEH--RT--------------------------------------ADILTKLRNAEKEL 125 (258)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC--CC--------------------------------------HHHHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHhcC--ch--------------------------------------hHHHHHHhHHHHHH
Confidence 555556666666666666555533 11 12244445566666
Q ss_pred HHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-C
Q 007517 314 KVFHEMFSSGVMPD-DVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM-P 391 (600)
Q Consensus 314 ~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~ 391 (600)
..++++... .|+ ...+..+...+...|++++|...++.+.+.. +.+...+..+...|.+.|++++|.+.+++. .
T Consensus 126 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 201 (258)
T 3uq3_A 126 KKAEAEAYV--NPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA--PEDARGYSNRAAALAKLMSFPEAIADCNKAIE 201 (258)
T ss_dssp HHHHHHHHC--CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHc--CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 666666553 333 2345556666666777777777777666542 345667777777777788888887777766 2
Q ss_pred CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC------CCCCchHHHHH
Q 007517 392 FEP-DAIIWGSLLGACRTHMKLDLAEVAAKKLLQLE------PKNAGPYILLS 437 (600)
Q Consensus 392 ~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~------p~~~~~~~~l~ 437 (600)
..| +...|..+...+...|++++|...+++++++. |++...+..+.
T Consensus 202 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~ 254 (258)
T 3uq3_A 202 KDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYY 254 (258)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHH
T ss_pred hCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHH
Confidence 233 46777888888888888888888888888877 66654444443
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.56 E-value=9.2e-13 Score=135.77 Aligned_cols=339 Identities=9% Similarity=0.014 Sum_probs=183.4
Q ss_pred HHHhCCChHHHHHHHhhcCC-CCcchHHHHHHHHhcCCCh---HHHHHHHhhCCCCCccchhHHHHHHHhcC-----CHH
Q 007517 108 GYVNNNRIDVARKLFEVMPE-KNEVSWTAMLMGYTQCGRI---QDAWELFKAMPMKSVVASNSMILGLGQNG-----EVQ 178 (600)
Q Consensus 108 ~~~~~g~~~~A~~~~~~m~~-p~~~t~~~ll~~~~~~g~~---~~a~~~~~~~~~~~~~~~~~li~~~~~~g-----~~~ 178 (600)
.+.+.|++++|+++|++..+ .+...+..+...+...|+. ++|...|+.....++..+..|..++...| +.+
T Consensus 12 ~~~~~g~~~~A~~~~~~aa~~g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~~~~~~ 91 (452)
T 3e4b_A 12 EALKRGDTVTAQQNYQQLAELGYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGATEAEHH 91 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCTGGGTCC----------------------------CHHHHHHHHHTC--CCHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCcCHH
Confidence 33344444444444444433 2223333333333334444 45555554444334444444444333333 445
Q ss_pred HHHHHHHhcccC-ChhhHHHHHHHHHHcCChHH---HHHHHHHHHHcCCccCchhHhhHHHHHhhhcchHHHHHHHHHHH
Q 007517 179 KARVVFDQMREK-DDATWSGMIKVYERKGYELE---VIDLFTLMQKEGVRVNFPSLISVLSVCASLASLDHGRQVHAQLV 254 (600)
Q Consensus 179 ~A~~~f~~~~~~-~~~~~~~li~~~~~~g~~~~---A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 254 (600)
+|...|++..++ +...+..|...|...+..++ +.+.+......| +......+...+...+.++.+......+.
T Consensus 92 ~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~ 168 (452)
T 3e4b_A 92 EAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQHLDDVERIC 168 (452)
T ss_dssp HHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGGHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccCHHHHHHHH
Confidence 555555554433 33445555555554443322 333333333332 23334444444444443333333322222
Q ss_pred HcCCCCchhhHHHHHHHHHHcC---CHHHHHhhhhhcCC---CCHHHHHHHHHHHHhc----CChHHHHHHHHHHHHCCC
Q 007517 255 RCQFDVDVYVASVLITMYIKCG---ELVKGKLIFDNFAS---KDIVMWNSIISGYAQY----GLGEKSLKVFHEMFSSGV 324 (600)
Q Consensus 255 ~~~~~~~~~~~~~li~~y~~~g---~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~----g~~~~A~~~~~~m~~~g~ 324 (600)
+.-...++..+..|..+|.+.| +.++|.+.|+...+ ++...+..|...|... +++++|+++|++.. .|
T Consensus 169 ~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g- 246 (452)
T 3e4b_A 169 KAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PG- 246 (452)
T ss_dssp HHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GG-
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CC-
Confidence 2222233336666777777777 67777777765533 3444445566666443 57888888888876 32
Q ss_pred CCCHHHHHHHHHH-H--hccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcC-----CHHHHHHHHHhCCCCCCH
Q 007517 325 MPDDVTLVGVLSA-C--SYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAG-----QVEDAMKLIEAMPFEPDA 396 (600)
Q Consensus 325 ~p~~~t~~~ll~a-~--~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-----~~~~A~~~~~~m~~~p~~ 396 (600)
+...+..+-.. + ...++.++|.++|++..+. | +...+..|..+|. .| ++++|.+.|++.- ..++
T Consensus 247 --~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~-g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g~~ 318 (452)
T 3e4b_A 247 --YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA-D---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GREV 318 (452)
T ss_dssp --STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TTCH
T ss_pred --CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CCCH
Confidence 23333334333 2 4578888888888887763 2 6677777888877 55 8999999999887 5577
Q ss_pred HHHHHHHHHHHH----cCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHh----cCCchHHHHHHHHHHhCCC
Q 007517 397 IIWGSLLGACRT----HMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYAS----QGRFHDVAELRKNMRKRNV 461 (600)
Q Consensus 397 ~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~g~ 461 (600)
..+..|...|.. ..+.++|...++++.+. .++.....|+.+|.. ..+.++|..+++...+.|.
T Consensus 319 ~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~ 389 (452)
T 3e4b_A 319 AADYYLGQIYRRGYLGKVYPQKALDHLLTAARN--GQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDT 389 (452)
T ss_dssp HHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT--TCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh--ChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCC
Confidence 777777776665 34899999999998774 445778889999875 4588899999999888774
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.55 E-value=2.1e-13 Score=130.41 Aligned_cols=245 Identities=10% Similarity=-0.057 Sum_probs=131.9
Q ss_pred chhHHHHHHHhcCCHHHHHHHHHhcccC---ChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCc--hhHhhHHHHH
Q 007517 163 ASNSMILGLGQNGEVQKARVVFDQMREK---DDATWSGMIKVYERKGYELEVIDLFTLMQKEGVRVNF--PSLISVLSVC 237 (600)
Q Consensus 163 ~~~~li~~~~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~~~ 237 (600)
........+.+.|++++|...|++..+. +...|..+...|...|++++|+..|++....+..|+. ..+..+...+
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~ 84 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKIL 84 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence 3444556666677777777777665432 3446666666667777777777776666653211111 1144445555
Q ss_pred hhhcchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHhhhhhcCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 007517 238 ASLASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFASKDIVMWNSIISGYAQYGLGEKSLKVFH 317 (600)
Q Consensus 238 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 317 (600)
...|++++|...+..+.+.. +.+..++..+...|. ..|++++|++.|+
T Consensus 85 ~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~-------------------------------~~~~~~~A~~~~~ 132 (272)
T 3u4t_A 85 MKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFY-------------------------------NKGNFPLAIQYME 132 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHH-------------------------------HTTCHHHHHHHHG
T ss_pred HHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHH-------------------------------HccCHHHHHHHHH
Confidence 55555555555555555543 223344444444444 4444455554444
Q ss_pred HHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCC---HHHHHHHHHhC---
Q 007517 318 EMFSSGVMPD-DVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQ---VEDAMKLIEAM--- 390 (600)
Q Consensus 318 ~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m--- 390 (600)
+..+. .|+ ...+..+...+...+++++|.+.|+.+.+.. +.+...+..+...+...|+ +++|...+++.
T Consensus 133 ~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 208 (272)
T 3u4t_A 133 KQIRP--TTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELK--PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEV 208 (272)
T ss_dssp GGCCS--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHH
T ss_pred HHhhc--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHH
Confidence 44432 222 2223333212222335555555555554431 2224445555555555555 44454444443
Q ss_pred -CCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhc
Q 007517 391 -PFEPD------AIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQ 443 (600)
Q Consensus 391 -~~~p~------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 443 (600)
...|+ ...|..+...+...|++++|...++++++++|+++.....+.......
T Consensus 209 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~ 268 (272)
T 3u4t_A 209 CAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHH 268 (272)
T ss_dssp HGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC------
T ss_pred HhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhccc
Confidence 11122 246777888889999999999999999999999977766666555443
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.55 E-value=8.8e-14 Score=133.12 Aligned_cols=239 Identities=11% Similarity=-0.064 Sum_probs=169.3
Q ss_pred CChHHHHHHHHHHHHcCC--c-cCchhHhhHHHHHhhhcchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHH
Q 007517 206 GYELEVIDLFTLMQKEGV--R-VNFPSLISVLSVCASLASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGK 282 (600)
Q Consensus 206 g~~~~A~~~~~~m~~~g~--~-p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~ 282 (600)
|++++|+..|+++.+... . .+..++..+...+...|++++|...+..+.+.. +.+..++..+...|...|++++|.
T Consensus 19 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~ 97 (275)
T 1xnf_A 19 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAY 97 (275)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred chHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHHH
Confidence 455556666655555321 1 123445555555556666666666666665543 345667777777888888888888
Q ss_pred hhhhhcCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhcCC
Q 007517 283 LIFDNFAS---KDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYL 359 (600)
Q Consensus 283 ~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~ 359 (600)
..|++... .+..+|..+...|...|++++|+..|+++.+. .|+.......+..+...|++++|...+.......
T Consensus 98 ~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~- 174 (275)
T 1xnf_A 98 EAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS- 174 (275)
T ss_dssp HHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS-
T ss_pred HHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-
Confidence 88876643 35778888899999999999999999999874 5665555555556677799999999998877652
Q ss_pred CCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchH
Q 007517 360 VEPKTEHYACMVDLLGRAGQVEDAMKLIEAM-PFEPD-----AIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPY 433 (600)
Q Consensus 360 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 433 (600)
+++...+. ++..+...++.++|.+.+++. ...|+ ...|..+...+...|++++|...++++++.+|++...
T Consensus 175 -~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~- 251 (275)
T 1xnf_A 175 -DKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVE- 251 (275)
T ss_dssp -CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHH-
T ss_pred -CcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHHH-
Confidence 34444444 777788888889999999876 33332 5778899999999999999999999999999977443
Q ss_pred HHHHHHHHhcCCchHHHHHH
Q 007517 434 ILLSNIYASQGRFHDVAELR 453 (600)
Q Consensus 434 ~~l~~~~~~~g~~~~a~~~~ 453 (600)
...++...|++++|.+.+
T Consensus 252 --~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 252 --HRYALLELSLLGQDQDDL 269 (275)
T ss_dssp --HHHHHHHHHHHHHC----
T ss_pred --HHHHHHHHHHHHhhHHHH
Confidence 366778888888887665
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.55 E-value=1.7e-13 Score=141.36 Aligned_cols=376 Identities=9% Similarity=0.001 Sum_probs=193.2
Q ss_pred HHHHHHcCCCHHHHHHHHccCCC-CCcchHHHHHHHHHhcCCh---HHHHHHHhhCCCCCcccHHHHHHHHHhCC-----
Q 007517 43 MLGGFIRDSRIDDARRLFDMMPE-KDVVAQTNMVLGYCQDGRV---DEGREIFDEMPKKNVISWTTMISGYVNNN----- 113 (600)
Q Consensus 43 ll~~~~~~g~~~~A~~~~~~m~~-~~~~~~~~li~~~~~~g~~---~~A~~~~~~m~~~~~~~~~~li~~~~~~g----- 113 (600)
+...+.+.|++++|.++|++..+ .++..+..|...|...|+. ++|..+|++..+.+..++..|...+...+
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~~~ 88 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELGYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGATEA 88 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCCTGGGTCC----------------------------CHHHHHHHHHTC--CCHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCc
Confidence 34445556666666666665542 2344444455555555555 56666666555445555555555344433
Q ss_pred ChHHHHHHHhhcCC-CCcchHHHHHHHHhcCCChHHHHHHHhhCCCCCccchhHHHHHHHhcCCHHHHHHHHHhcc-cCC
Q 007517 114 RIDVARKLFEVMPE-KNEVSWTAMLMGYTQCGRIQDAWELFKAMPMKSVVASNSMILGLGQNGEVQKARVVFDQMR-EKD 191 (600)
Q Consensus 114 ~~~~A~~~~~~m~~-p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~-~~~ 191 (600)
++++|+..|++..+ .+...+..+...|...+..+.+.. +.+.+.... ..+
T Consensus 89 ~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~----------------------------a~~~~~~a~~~g~ 140 (452)
T 3e4b_A 89 EHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVN----------------------------AQQQISQWQAAGY 140 (452)
T ss_dssp HHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCC----------------------------HHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHH----------------------------HHHHHHHHHHCCC
Confidence 44555555555444 223344444444443332222111 122222211 123
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCchhHhhHHHHHhhhc---chHHHHHHHHHHHHcCCCCchhhHHHH
Q 007517 192 DATWSGMIKVYERKGYELEVIDLFTLMQKEGVRVNFPSLISVLSVCASLA---SLDHGRQVHAQLVRCQFDVDVYVASVL 268 (600)
Q Consensus 192 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l 268 (600)
...+..+...|...+.++++......+.+.-...+...+..+...+...| +.++|...+....+.| +++...+..|
T Consensus 141 ~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~L 219 (452)
T 3e4b_A 141 PEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSV 219 (452)
T ss_dssp TTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHH
Confidence 44445555555555544444433333322212222234444444555555 5555556665555555 3333433455
Q ss_pred HHHHHHc----CCHHHHHhhhhhcCCCCHHHHHHHHHH-H--HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 007517 269 ITMYIKC----GELVKGKLIFDNFASKDIVMWNSIISG-Y--AQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYT 341 (600)
Q Consensus 269 i~~y~~~----g~~~~A~~~~~~~~~~~~~~~~~li~~-~--~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 341 (600)
..+|... ++.++|...|+.....+...+..|... | ...+++++|+++|++..+.| +...+..+-..|. .
T Consensus 220 g~~y~~g~~~~~d~~~A~~~~~~aa~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~ 295 (452)
T 3e4b_A 220 ARVLGDATLGTPDEKTAQALLEKIAPGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-E 295 (452)
T ss_dssp HHHHTCGGGSSCCHHHHHHHHHHHGGGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-H
T ss_pred HHHHhCCCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-c
Confidence 5556444 577777777777663356667777666 3 45788888999888888776 4445555555554 4
Q ss_pred C-----CHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----
Q 007517 342 G-----KVKEGREIFESMKSKYLVEPKTEHYACMVDLLGR----AGQVEDAMKLIEAMPFEPDAIIWGSLLGACRT---- 408 (600)
Q Consensus 342 g-----~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~---- 408 (600)
| +.++|.++|++.. +.++..+..|..+|.. ..++++|.+.|++.--..+......|...|..
T Consensus 296 G~g~~~d~~~A~~~~~~Aa-----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~ 370 (452)
T 3e4b_A 296 GKWVPADAKAAEAHFEKAV-----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFAIAQLFSQGKGT 370 (452)
T ss_dssp CSSSCCCHHHHHHHHHTTT-----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHHHHHHHHHSCTTB
T ss_pred CCCCCCCHHHHHHHHHHHh-----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHHHHHHHHHhCCCC
Confidence 4 8888988888765 3456777778877766 34889999999877222344455556555553
Q ss_pred cCCHHHHHHHHHHHhccCCCCCchHHHHHHHH--HhcCCchHHHHHHHHHHh
Q 007517 409 HMKLDLAEVAAKKLLQLEPKNAGPYILLSNIY--ASQGRFHDVAELRKNMRK 458 (600)
Q Consensus 409 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~--~~~g~~~~a~~~~~~m~~ 458 (600)
..|.++|...++++.+..+.. ....+..+. ...++.++|.++.++-.+
T Consensus 371 ~~d~~~A~~~~~~A~~~g~~~--a~~~l~~l~~~~~~~~~~~a~~~~~~~~~ 420 (452)
T 3e4b_A 371 KPDPLNAYVFSQLAKAQDTPE--ANDLATQLEAPLTPAQRAEGQRLVQQELA 420 (452)
T ss_dssp CCCHHHHHHHHHHHHTTCCHH--HHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCHH--HHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 458899999999988876543 233333332 233455666666665543
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.50 E-value=1.6e-12 Score=122.64 Aligned_cols=196 Identities=8% Similarity=-0.035 Sum_probs=141.6
Q ss_pred hhhHHHHHHHHHHcCCHHHHHhhhhhcCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007517 262 VYVASVLITMYIKCGELVKGKLIFDNFAS---KDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSAC 338 (600)
Q Consensus 262 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 338 (600)
...+..+...|...|++++|...|+++.. .+...|..+...|...|++++|++.|+++.+.. +.+...+..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 34556666677777777777777766542 356677777777777888888888887777642 23455666677777
Q ss_pred hccCCHHHHHHHHHHhHhcCCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHH
Q 007517 339 SYTGKVKEGREIFESMKSKYLVEP-KTEHYACMVDLLGRAGQVEDAMKLIEAM-PFEP-DAIIWGSLLGACRTHMKLDLA 415 (600)
Q Consensus 339 ~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a 415 (600)
...|++++|.++++.+.+ .+..| +...+..+...|.+.|++++|.+.++++ ...| +...|..+...+...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHH
Confidence 778888888888877765 22233 4566777778888888888888887776 2223 466777777888888888888
Q ss_pred HHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007517 416 EVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMRKR 459 (600)
Q Consensus 416 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 459 (600)
...++++++..|+++..+..++.+|...|++++|.++++++.+.
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 195 RQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 88888888888877777778888888888888888888877654
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.50 E-value=3.2e-12 Score=120.54 Aligned_cols=204 Identities=11% Similarity=-0.001 Sum_probs=148.3
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCchhHhhHHHHHhhhcchHHHHHHHHHHHHcCCCCchhhHHHHHHH
Q 007517 192 DATWSGMIKVYERKGYELEVIDLFTLMQKEGVRVNFPSLISVLSVCASLASLDHGRQVHAQLVRCQFDVDVYVASVLITM 271 (600)
Q Consensus 192 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 271 (600)
...|..+...+...|++++|+..|+++.... +.+..++..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~------------------------------------~~~~~~~~~la~~ 80 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID------------------------------------PSSADAHAALAVV 80 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC------------------------------------TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC------------------------------------CChHHHHHHHHHH
Confidence 4556666777777777777777777766542 2233445555555
Q ss_pred HHHcCCHHHHHhhhhhcCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHH
Q 007517 272 YIKCGELVKGKLIFDNFAS---KDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPD-DVTLVGVLSACSYTGKVKEG 347 (600)
Q Consensus 272 y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a 347 (600)
|.+.|++++|.+.|+++.. .+...|..+...|...|++++|+++|+++.+.+..|+ ...+..+..++...|++++|
T Consensus 81 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 160 (252)
T 2ho1_A 81 FQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQA 160 (252)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHH
Confidence 6666666666666655432 3566777777788888888888888888876334554 34666777788888888888
Q ss_pred HHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q 007517 348 REIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM-PFE-PDAIIWGSLLGACRTHMKLDLAEVAAKKLLQL 425 (600)
Q Consensus 348 ~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 425 (600)
.++++.+.+.. +.+...+..+...|.+.|++++|.+.++++ ... .+...+..+...+...|+.++|...++++.+.
T Consensus 161 ~~~~~~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 161 KEYFEKSLRLN--RNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 88888887642 345778888999999999999999999887 333 45677888888899999999999999999999
Q ss_pred CCCCCchH
Q 007517 426 EPKNAGPY 433 (600)
Q Consensus 426 ~p~~~~~~ 433 (600)
.|+++...
T Consensus 239 ~p~~~~~~ 246 (252)
T 2ho1_A 239 YPGSLEYQ 246 (252)
T ss_dssp CTTSHHHH
T ss_pred CCCCHHHH
Confidence 99885443
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.50 E-value=2e-12 Score=119.41 Aligned_cols=196 Identities=13% Similarity=0.035 Sum_probs=133.9
Q ss_pred chhhHHHHHHHHHHcCCHHHHHhhhhhcCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007517 261 DVYVASVLITMYIKCGELVKGKLIFDNFAS---KDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSA 337 (600)
Q Consensus 261 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 337 (600)
+..++..+...|...|++++|...|+.+.. .+...|..+...|...|++++|++.|+++.+.. +.+..++..+...
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 345556666666777777777777665432 355667777777777777777777777776642 2345566666677
Q ss_pred Hhcc-CCHHHHHHHHHHhHhcCCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHH
Q 007517 338 CSYT-GKVKEGREIFESMKSKYLVEP-KTEHYACMVDLLGRAGQVEDAMKLIEAM-PFEP-DAIIWGSLLGACRTHMKLD 413 (600)
Q Consensus 338 ~~~~-g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~ 413 (600)
+... |++++|...++.+.+ .+..| +...+..+...|.+.|++++|.+.++++ ...| +...|..+...+...|+++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHH
Confidence 7777 777777777777765 22223 2566777777777777777777777766 2223 4666777777777777788
Q ss_pred HHHHHHHHHhccCC-CCCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007517 414 LAEVAAKKLLQLEP-KNAGPYILLSNIYASQGRFHDVAELRKNMRK 458 (600)
Q Consensus 414 ~a~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 458 (600)
+|...++++++..| +++..+..++..+...|+.+++..+++.+.+
T Consensus 165 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 165 DADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 88777777777777 7767777777777777777777777777654
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.49 E-value=8.2e-13 Score=123.75 Aligned_cols=196 Identities=12% Similarity=0.083 Sum_probs=140.4
Q ss_pred chhhHHHHHHHHHHcCCHHHHHhhhhhcCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007517 261 DVYVASVLITMYIKCGELVKGKLIFDNFAS---KDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSA 337 (600)
Q Consensus 261 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 337 (600)
....+..+...|.+.|++++|...|+++.. .+...|..+...|...|++++|++.|+++.+.. +.+...+..+...
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 100 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNV 100 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHH
Confidence 445566677777788888888888877643 366778888888888888888888888887652 3355677777788
Q ss_pred HhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcCCHHHH
Q 007517 338 CSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM-PF-EPDAIIWGSLLGACRTHMKLDLA 415 (600)
Q Consensus 338 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~g~~~~a 415 (600)
+...|++++|.++++++.+.. +.+...+..+...|.+.|++++|.+.++++ .. +.+...|..+...+...|++++|
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRAG--MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHHT--CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHH
Confidence 888888888888888887642 446777888888888888888888888876 22 23577788888888888899999
Q ss_pred HHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007517 416 EVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMRKR 459 (600)
Q Consensus 416 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 459 (600)
...++++++..|+++..+..++.+|...|++++|.+.++++.+.
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 179 LSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 99998888888888888888888898999999999888888764
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.49 E-value=5.6e-13 Score=124.90 Aligned_cols=178 Identities=11% Similarity=0.039 Sum_probs=136.8
Q ss_pred chhhHHHHHHHHHHcCCHHHHHhhhhhcCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007517 261 DVYVASVLITMYIKCGELVKGKLIFDNFAS---KDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSA 337 (600)
Q Consensus 261 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 337 (600)
+...+..+...|.+.|++++|...|+++.. .+...|..+...|...|++++|++.|+++.+.. +.+...+..+...
T Consensus 56 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 134 (243)
T 2q7f_A 56 DAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTV 134 (243)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 345555566666666666666666665432 366777888888888888888888888887753 3456677778888
Q ss_pred HhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcCCHHHH
Q 007517 338 CSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM-PF-EPDAIIWGSLLGACRTHMKLDLA 415 (600)
Q Consensus 338 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~g~~~~a 415 (600)
+...|++++|.++++++.+.. +.+...+..+...|.+.|++++|.+.++++ .. +.+..+|..+...+...|++++|
T Consensus 135 ~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 212 (243)
T 2q7f_A 135 LVKLEQPKLALPYLQRAVELN--ENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKA 212 (243)
T ss_dssp HHHTSCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHH
T ss_pred HHHhccHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHH
Confidence 888899999999998887752 446788889999999999999999999887 22 34577899999999999999999
Q ss_pred HHHHHHHhccCCCCCchHHHHHHHHH
Q 007517 416 EVAAKKLLQLEPKNAGPYILLSNIYA 441 (600)
Q Consensus 416 ~~~~~~~~~~~p~~~~~~~~l~~~~~ 441 (600)
...+++++++.|+++..+..+..+..
T Consensus 213 ~~~~~~~~~~~p~~~~~~~~~~~l~~ 238 (243)
T 2q7f_A 213 LEMLDKAIDIQPDHMLALHAKKLLGH 238 (243)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHTC---
T ss_pred HHHHHHHHccCcchHHHHHHHHHHHh
Confidence 99999999999998777666655443
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.48 E-value=3e-12 Score=127.99 Aligned_cols=244 Identities=9% Similarity=0.040 Sum_probs=179.2
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCccC-chhHhhHHHHHhhhcc-hHHHHHHHHHHHHcCCCCchhhHHHHH
Q 007517 192 DATWSGMIKVYERKGYELEVIDLFTLMQKEGVRVN-FPSLISVLSVCASLAS-LDHGRQVHAQLVRCQFDVDVYVASVLI 269 (600)
Q Consensus 192 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~li 269 (600)
...|+.+...+.+.|++++|+..|++.... .|+ ...|..+..++...|+ +++|...++.+++.. +.+..+|..+.
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l--~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g 173 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIEL--NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRR 173 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHh--CccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHH
Confidence 345666666667777777777777776664 333 3455566666666675 777777777777665 44667777788
Q ss_pred HHHHHcCCHHHHHhhhhhcCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhc-cCCH
Q 007517 270 TMYIKCGELVKGKLIFDNFAS---KDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMP-DDVTLVGVLSACSY-TGKV 344 (600)
Q Consensus 270 ~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~-~g~~ 344 (600)
.+|.+.|++++|...|+++.. .+...|..+..++.+.|++++|+..|+++++. .| +...|+.+..++.. .|..
T Consensus 174 ~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l--~P~~~~a~~~lg~~l~~l~~~~ 251 (382)
T 2h6f_A 174 VLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGYN 251 (382)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCcc
Confidence 888888888888888877653 57788888888888899999999999998875 44 45577777777777 5555
Q ss_pred HHH-----HHHHHHhHhcCCCCCChHHHHHHHHHHhhcC--CHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcC------
Q 007517 345 KEG-----REIFESMKSKYLVEPKTEHYACMVDLLGRAG--QVEDAMKLIEAMPFEP-DAIIWGSLLGACRTHM------ 410 (600)
Q Consensus 345 ~~a-----~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~p-~~~~~~~ll~~~~~~g------ 410 (600)
++| ...+++..+.. +-+...|..+..+|.+.| ++++|.+.++++...| +...+..|...+...|
T Consensus 252 ~eA~~~~el~~~~~Al~l~--P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~ 329 (382)
T 2h6f_A 252 DRAVLEREVQYTLEMIKLV--PHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDN 329 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSS
T ss_pred hHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccccc
Confidence 666 47777777642 345778888888898888 6889998888774445 4677888888888764
Q ss_pred --C-HHHHHHHHHHH-hccCCCCCchHHHHHHHHHh
Q 007517 411 --K-LDLAEVAAKKL-LQLEPKNAGPYILLSNIYAS 442 (600)
Q Consensus 411 --~-~~~a~~~~~~~-~~~~p~~~~~~~~l~~~~~~ 442 (600)
+ .++|..+++++ .+++|.....|..++..+..
T Consensus 330 ~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 330 KEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQS 365 (382)
T ss_dssp HHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHH
Confidence 2 58999999999 89999988888877776643
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.48 E-value=5.1e-12 Score=116.60 Aligned_cols=208 Identities=11% Similarity=-0.061 Sum_probs=153.1
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCchhHhhHHHHHhhhcchHHHHHHHHHHHHcCCCCchhhHHHHHH
Q 007517 191 DDATWSGMIKVYERKGYELEVIDLFTLMQKEGVRVNFPSLISVLSVCASLASLDHGRQVHAQLVRCQFDVDVYVASVLIT 270 (600)
Q Consensus 191 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 270 (600)
+...|..+...+...|++++|+..|+++.... +.+..++..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~------------------------------------~~~~~~~~~l~~ 50 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD------------------------------------PKNELAWLVRAE 50 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------------------------------TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC------------------------------------ccchHHHHHHHH
Confidence 34556666666777777777777776665532 223334555556
Q ss_pred HHHHcCCHHHHHhhhhhcC---CCCHHHHHHHHHHHHhc-CChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHH
Q 007517 271 MYIKCGELVKGKLIFDNFA---SKDIVMWNSIISGYAQY-GLGEKSLKVFHEMFSSGVMPD-DVTLVGVLSACSYTGKVK 345 (600)
Q Consensus 271 ~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~ 345 (600)
.|...|++++|...|+++. ..+..+|..+...|... |++++|+..|+++.+.+..|+ ...+..+..++...|+++
T Consensus 51 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 130 (225)
T 2vq2_A 51 IYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFG 130 (225)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHH
Confidence 6666666666666665543 23566778888888888 999999999998887433444 456777888888999999
Q ss_pred HHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 007517 346 EGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM-PFE--PDAIIWGSLLGACRTHMKLDLAEVAAKKL 422 (600)
Q Consensus 346 ~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~--p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 422 (600)
+|...++.+.+.. +.+...+..+...|.+.|++++|.+.++++ ... .+...+..+...+...|+.+.|..+++.+
T Consensus 131 ~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 208 (225)
T 2vq2_A 131 LAEAYLKRSLAAQ--PQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQL 208 (225)
T ss_dssp HHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC--CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 9999999887752 345788899999999999999999999887 222 46677777788889999999999999999
Q ss_pred hccCCCCCchHHHH
Q 007517 423 LQLEPKNAGPYILL 436 (600)
Q Consensus 423 ~~~~p~~~~~~~~l 436 (600)
.+..|+++.....+
T Consensus 209 ~~~~p~~~~~~~~l 222 (225)
T 2vq2_A 209 QANFPYSEELQTVL 222 (225)
T ss_dssp HHHCTTCHHHHHHH
T ss_pred HHhCCCCHHHHHHh
Confidence 99999986554443
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.47 E-value=1.1e-11 Score=118.70 Aligned_cols=228 Identities=11% Similarity=-0.029 Sum_probs=111.4
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCchhHhhHHHHHhh----hcchHHHHHHHHHHHHcCCCCchhhHH
Q 007517 191 DDATWSGMIKVYERKGYELEVIDLFTLMQKEGVRVNFPSLISVLSVCAS----LASLDHGRQVHAQLVRCQFDVDVYVAS 266 (600)
Q Consensus 191 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 266 (600)
+..++..+...|...|++++|+..|++..+.+ +...+..+...+.. .+++++|...+....+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 34455556666666666666666666665521 22333334444444 444444444444444433 333333
Q ss_pred HHHHHHHHcCCHHHHHhhhhhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cC
Q 007517 267 VLITMYIKCGELVKGKLIFDNFASKDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSY----TG 342 (600)
Q Consensus 267 ~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~----~g 342 (600)
.+..+|... ....+++++|++.|++..+.+ +...+..+-..+.. .+
T Consensus 79 ~lg~~~~~g---------------------------~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~ 128 (273)
T 1ouv_A 79 LLGNLYYSG---------------------------QGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTR 128 (273)
T ss_dssp HHHHHHHHT---------------------------SSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCC
T ss_pred HHHHHHhCC---------------------------CCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCccc
Confidence 444444440 000444444444444444432 33334444444444 45
Q ss_pred CHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHH
Q 007517 343 KVKEGREIFESMKSKYLVEPKTEHYACMVDLLGR----AGQVEDAMKLIEAMPFEPDAIIWGSLLGACRT----HMKLDL 414 (600)
Q Consensus 343 ~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~----~g~~~~ 414 (600)
++++|.+.|++..+. + +...+..+...|.+ .+++++|.+.+++.--..+...+..+...+.. .+++++
T Consensus 129 ~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~ 204 (273)
T 1ouv_A 129 DFKKAVEYFTKACDL-N---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKE 204 (273)
T ss_dssp CHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHH
T ss_pred CHHHHHHHHHHHHhc-C---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHH
Confidence 555555555544432 1 33444444555544 55555555555544111234445555555555 566666
Q ss_pred HHHHHHHHhccCCCCCchHHHHHHHHHh----cCCchHHHHHHHHHHhCC
Q 007517 415 AEVAAKKLLQLEPKNAGPYILLSNIYAS----QGRFHDVAELRKNMRKRN 460 (600)
Q Consensus 415 a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~g 460 (600)
|...++++.+.+| +..+..++.+|.. .|++++|.+.+++..+.|
T Consensus 205 A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 205 ALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 6666666555544 3455556666665 566666666666555543
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.47 E-value=1.8e-11 Score=116.98 Aligned_cols=191 Identities=11% Similarity=-0.018 Sum_probs=163.5
Q ss_pred chhhHHHHHHHHHHcCCHHHHHhhhhhcCC-CCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 007517 261 DVYVASVLITMYIKCGELVKGKLIFDNFAS-KDIVMWNSIISGYAQ----YGLGEKSLKVFHEMFSSGVMPDDVTLVGVL 335 (600)
Q Consensus 261 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 335 (600)
++..+..+...|...|++++|...|++..+ .+..++..+...|.. .+++++|++.|++..+.+ +...+..+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg 81 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLG 81 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHH
Confidence 455667778888888999999998887655 467788888999999 999999999999999876 667777888
Q ss_pred HHHhc----cCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 007517 336 SACSY----TGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGR----AGQVEDAMKLIEAMPFEPDAIIWGSLLGACR 407 (600)
Q Consensus 336 ~a~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~ 407 (600)
..+.. .+++++|.+.|++..+. .+...+..+..+|.+ .|++++|.+.+++.-...+...+..+...+.
T Consensus 82 ~~~~~g~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~ 157 (273)
T 1ouv_A 82 NLYYSGQGVSQNTNKALQYYSKACDL----KYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYD 157 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHhCCCCcccCHHHHHHHHHHHHHc----CCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 88888 99999999999999874 378889999999999 9999999999998721236778888888888
Q ss_pred H----cCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHh----cCCchHHHHHHHHHHhCC
Q 007517 408 T----HMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYAS----QGRFHDVAELRKNMRKRN 460 (600)
Q Consensus 408 ~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~g 460 (600)
. .+++++|...++++.+.+ ++..+..++.+|.. .+++++|.+.+++..+.+
T Consensus 158 ~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~ 216 (273)
T 1ouv_A 158 AGRGTPKDLKKALASYDKACDLK--DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE 216 (273)
T ss_dssp HTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT
T ss_pred cCCCCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC
Confidence 8 899999999999999875 45788999999999 999999999999988765
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.47 E-value=2.7e-12 Score=118.29 Aligned_cols=111 Identities=11% Similarity=0.055 Sum_probs=62.3
Q ss_pred CCHHHHHhhhhhcCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHH
Q 007517 276 GELVKGKLIFDNFAS---KDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFE 352 (600)
Q Consensus 276 g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 352 (600)
|++++|...|++..+ .+...|..+...|...|++++|+..|++..+.. .+...+..+..++...|++++|...|+
T Consensus 98 g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~ 175 (217)
T 2pl2_A 98 GYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYA 175 (217)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 666666666655432 345666666667777777777777777776654 555666666666777777777777777
Q ss_pred HhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC
Q 007517 353 SMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM 390 (600)
Q Consensus 353 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 390 (600)
...+.. +.+...+..+..++.+.|++++|.+.+++.
T Consensus 176 ~al~~~--P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 176 KALEQA--PKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHS--TTCHHHHHHHHHHHTC--------------
T ss_pred HHHHhC--CCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 766532 334666666777777777777777666654
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.47 E-value=9.5e-12 Score=118.72 Aligned_cols=189 Identities=12% Similarity=0.017 Sum_probs=131.6
Q ss_pred CcchHHHHHHHHhcCCChHHHHHHHhhCC---CCCccchhHHHHHHHhcCCHHHHHHHHHhccc--CChh----hHHHHH
Q 007517 129 NEVSWTAMLMGYTQCGRIQDAWELFKAMP---MKSVVASNSMILGLGQNGEVQKARVVFDQMRE--KDDA----TWSGMI 199 (600)
Q Consensus 129 ~~~t~~~ll~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~--~~~~----~~~~li 199 (600)
|...+......+...|++++|...++.+. +.+..++..+...|...|++++|...|++..+ ++.. +|..+.
T Consensus 2 n~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg 81 (272)
T 3u4t_A 2 NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYG 81 (272)
T ss_dssp ---CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHH
Confidence 34556677888999999999999999987 55667899999999999999999999998875 2333 388999
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCccCchhHhhHHHHHhhhcchHHHHHHHHHHHHcCCCCchhhHHHHH-HHHHHcCCH
Q 007517 200 KVYERKGYELEVIDLFTLMQKEGVRVNFPSLISVLSVCASLASLDHGRQVHAQLVRCQFDVDVYVASVLI-TMYIKCGEL 278 (600)
Q Consensus 200 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li-~~y~~~g~~ 278 (600)
..|...|++++|+..|++..+.. +.+...+..+...+...|++++|...+..+.+.. +.+..++..+. ..|. .+++
T Consensus 82 ~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~-~~~~ 158 (272)
T 3u4t_A 82 KILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYY-NKEY 158 (272)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHH-TTCH
T ss_pred HHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHH-HHHH
Confidence 99999999999999999998863 3355788888899999999999999988877653 33444444444 2222 2355
Q ss_pred HHHHhhhhhcCC---CCHHHHHHHHHHHHhcCC---hHHHHHHHHHHH
Q 007517 279 VKGKLIFDNFAS---KDIVMWNSIISGYAQYGL---GEKSLKVFHEMF 320 (600)
Q Consensus 279 ~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~ 320 (600)
++|.+.|+++.+ .+...|..+...+...|+ +++|+..|++..
T Consensus 159 ~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~ 206 (272)
T 3u4t_A 159 VKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLI 206 (272)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHH
Confidence 555554444322 223344444444444444 444444444433
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.45 E-value=9.3e-13 Score=134.16 Aligned_cols=260 Identities=11% Similarity=-0.017 Sum_probs=163.5
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCccCc-----hhHhhHHHHHhhhcchHHHHHHHHHHHHc----C-CCCchhhHHH
Q 007517 198 MIKVYERKGYELEVIDLFTLMQKEGVRVNF-----PSLISVLSVCASLASLDHGRQVHAQLVRC----Q-FDVDVYVASV 267 (600)
Q Consensus 198 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-----~t~~~ll~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~ 267 (600)
+...+...|++++|+..|++..+.+ |+. ..+..+...+...|+++.|...+..+.+. + .+....++..
T Consensus 54 ~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 131 (411)
T 4a1s_A 54 EGERLCNAGDCRAGVAFFQAAIQAG--TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGN 131 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhc--ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHH
Confidence 3344444555555555555444431 221 23334444444455555555544444332 1 1122345556
Q ss_pred HHHHHHHcCCHHHHHhhhhhcCC---------CCHHHHHHHHHHHHhcCC-----------------hHHHHHHHHHHHH
Q 007517 268 LITMYIKCGELVKGKLIFDNFAS---------KDIVMWNSIISGYAQYGL-----------------GEKSLKVFHEMFS 321 (600)
Q Consensus 268 li~~y~~~g~~~~A~~~~~~~~~---------~~~~~~~~li~~~~~~g~-----------------~~~A~~~~~~m~~ 321 (600)
+...|...|++++|...|++... ....+|..+...|...|+ +++|++.+++..+
T Consensus 132 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~ 211 (411)
T 4a1s_A 132 LGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLK 211 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHH
Confidence 66666667777777666665432 123466777777777777 7777777776543
Q ss_pred C----CCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCC----hHHHHHHHHHHhhcCCHHHHHHHHHhC--
Q 007517 322 S----GVMPD-DVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPK----TEHYACMVDLLGRAGQVEDAMKLIEAM-- 390 (600)
Q Consensus 322 ~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m-- 390 (600)
. +-.|. ..++..+...+...|++++|.+.+++..+...-.++ ...+..+...|...|++++|.+.+++.
T Consensus 212 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 291 (411)
T 4a1s_A 212 LMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLA 291 (411)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 2 11121 235666777788888888888888877653211112 236788888899999999999888766
Q ss_pred --CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC------CchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007517 391 --PFEPD----AIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKN------AGPYILLSNIYASQGRFHDVAELRKNMRK 458 (600)
Q Consensus 391 --~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 458 (600)
+-..+ ..++..+...+...|++++|...+++++++.+.. ...+..++.+|...|++++|.+.+++..+
T Consensus 292 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 292 LAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 11111 4567888888999999999999999988764332 34788899999999999999999998875
Q ss_pred C
Q 007517 459 R 459 (600)
Q Consensus 459 ~ 459 (600)
.
T Consensus 372 ~ 372 (411)
T 4a1s_A 372 L 372 (411)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.43 E-value=2.6e-12 Score=130.27 Aligned_cols=260 Identities=12% Similarity=0.009 Sum_probs=157.3
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCccCc-----hhHhhHHHHHhhhcchHHHHHHHHHHHHc----CCC-CchhhHH
Q 007517 197 GMIKVYERKGYELEVIDLFTLMQKEGVRVNF-----PSLISVLSVCASLASLDHGRQVHAQLVRC----QFD-VDVYVAS 266 (600)
Q Consensus 197 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-----~t~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~ 266 (600)
.....+...|++++|+..|++....+ |+. ..+..+...+...|+++.|...+..+.+. +.+ ....++.
T Consensus 14 ~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 91 (406)
T 3sf4_A 14 LEGERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASG 91 (406)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHH
Confidence 33344444444444444444444431 111 22333334444444444444444443321 111 1133455
Q ss_pred HHHHHHHHcCCHHHHHhhhhhcCC-----CC----HHHHHHHHHHHHhcCC--------------------hHHHHHHHH
Q 007517 267 VLITMYIKCGELVKGKLIFDNFAS-----KD----IVMWNSIISGYAQYGL--------------------GEKSLKVFH 317 (600)
Q Consensus 267 ~li~~y~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~--------------------~~~A~~~~~ 317 (600)
.+...|...|++++|...|++... ++ ..++..+...|...|+ +++|++.++
T Consensus 92 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~ 171 (406)
T 3sf4_A 92 NLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYE 171 (406)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHH
Confidence 566666666676666666655432 11 3466667777777777 777777777
Q ss_pred HHHHC----CCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCC----hHHHHHHHHHHhhcCCHHHHHHHHH
Q 007517 318 EMFSS----GVMPD-DVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPK----TEHYACMVDLLGRAGQVEDAMKLIE 388 (600)
Q Consensus 318 ~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~ 388 (600)
+.... +-.|. ..++..+...+...|++++|.+.+++..+...-.++ ...+..+...|...|++++|.+.++
T Consensus 172 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 251 (406)
T 3sf4_A 172 ENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYK 251 (406)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 65431 11122 235666677777888888888888776543211122 3367788888888888888888887
Q ss_pred hC----CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC------CchHHHHHHHHHhcCCchHHHHHHH
Q 007517 389 AM----PFEPD----AIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKN------AGPYILLSNIYASQGRFHDVAELRK 454 (600)
Q Consensus 389 ~m----~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~a~~~~~ 454 (600)
+. +..++ ..++..+...+...|++++|...+++++++.+.. +..+..++.+|...|++++|.+.++
T Consensus 252 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 331 (406)
T 3sf4_A 252 KTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAE 331 (406)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 65 11112 4567778888888899999999988888764332 4467788888999999999998888
Q ss_pred HHHh
Q 007517 455 NMRK 458 (600)
Q Consensus 455 ~m~~ 458 (600)
+..+
T Consensus 332 ~al~ 335 (406)
T 3sf4_A 332 KHLE 335 (406)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8764
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.42 E-value=3.3e-12 Score=122.05 Aligned_cols=238 Identities=8% Similarity=-0.079 Sum_probs=170.3
Q ss_pred hcCCHHHHHHHHHhcccC-------ChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCchhHhhHHHHHhhhcchHH
Q 007517 173 QNGEVQKARVVFDQMREK-------DDATWSGMIKVYERKGYELEVIDLFTLMQKEGVRVNFPSLISVLSVCASLASLDH 245 (600)
Q Consensus 173 ~~g~~~~A~~~f~~~~~~-------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~ 245 (600)
..|++++|...|+++.+. +..+|..+...|...|++++|+..|++..... +.+..++..+...+...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 346677777777776642 35567778888888888888888888887753 2346677777778888888888
Q ss_pred HHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHhhhhhcCC--CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 007517 246 GRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFAS--KDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSG 323 (600)
Q Consensus 246 a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 323 (600)
|...+..+++.. +.+..++..+...|.+.|++++|...|+++.. |+...+...+..+...|++++|+..+++.....
T Consensus 96 A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 174 (275)
T 1xnf_A 96 AYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS 174 (275)
T ss_dssp HHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 888888888764 44577888888889999999999999887753 333333344445566799999999998887652
Q ss_pred CCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCC-----hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHH
Q 007517 324 VMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPK-----TEHYACMVDLLGRAGQVEDAMKLIEAM-PFEPDAI 397 (600)
Q Consensus 324 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~ 397 (600)
+++...+ .++..+...++.++|.+.+...... .|+ ...+..+...|.+.|++++|.+.|++. ...|+.
T Consensus 175 -~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~- 248 (275)
T 1xnf_A 175 -DKEQWGW-NIVEFYLGNISEQTLMERLKADATD---NTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHN- 248 (275)
T ss_dssp -CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCS---HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTT-
T ss_pred -CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcc---cccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchh-
Confidence 3444444 4666777888889999998877542 232 578889999999999999999999987 555633
Q ss_pred HHHHHHHHHHHcCCHHHHHHHH
Q 007517 398 IWGSLLGACRTHMKLDLAEVAA 419 (600)
Q Consensus 398 ~~~~ll~~~~~~g~~~~a~~~~ 419 (600)
+.....++...|++++|...+
T Consensus 249 -~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 249 -FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp -CHHHHHHHHHHHHHHHC----
T ss_pred -HHHHHHHHHHHHHHHhhHHHH
Confidence 222344566777788777665
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.42 E-value=3.2e-10 Score=120.95 Aligned_cols=226 Identities=11% Similarity=0.016 Sum_probs=170.3
Q ss_pred HHHHHHHHHHHHcCCccCchhHhhHHHHHhhhcchHHHH-HHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHhhhhh
Q 007517 209 LEVIDLFTLMQKEGVRVNFPSLISVLSVCASLASLDHGR-QVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDN 287 (600)
Q Consensus 209 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~ 287 (600)
+.+..+|++.... .+-+...|.....-+...|+.+.|. .+++..+.. ++.+..++-.++...-+.|+++.|.++|+.
T Consensus 326 ~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek 403 (679)
T 4e6h_A 326 ARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILS 403 (679)
T ss_dssp HHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 3456678777765 2335566667777777888888996 999999874 356677788889999999999999999987
Q ss_pred cCC-------------C------------CHHHHHHHHHHHHhcCChHHHHHHHHHHHHC-C-CCCCHHHHHHHHHHHhc
Q 007517 288 FAS-------------K------------DIVMWNSIISGYAQYGLGEKSLKVFHEMFSS-G-VMPDDVTLVGVLSACSY 340 (600)
Q Consensus 288 ~~~-------------~------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g-~~p~~~t~~~ll~a~~~ 340 (600)
+.. | ....|-..+....+.|..+.|..+|.+..+. + ..+......+.+.-. .
T Consensus 404 ~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~-~ 482 (679)
T 4e6h_A 404 CIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYH-I 482 (679)
T ss_dssp HHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHT-T
T ss_pred HHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH-h
Confidence 753 2 1236888888888899999999999999886 2 122222222333322 2
Q ss_pred cCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC----CHHHHHHHHHHHHHcCCHHHH
Q 007517 341 TGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM-PFEP----DAIIWGSLLGACRTHMKLDLA 415 (600)
Q Consensus 341 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p----~~~~~~~ll~~~~~~g~~~~a 415 (600)
.++.+.|+++|+...+.+ +.+...+...++.....|+.+.|..+|++. ...| ....|...+.--..+|+.+.+
T Consensus 483 ~~d~e~Ar~ife~~Lk~~--p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~ 560 (679)
T 4e6h_A 483 SKDTKTACKVLELGLKYF--ATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSV 560 (679)
T ss_dssp TSCCHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHH
T ss_pred CCCHHHHHHHHHHHHHHC--CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 356999999999998864 456777889999999999999999999987 2233 356899999999999999999
Q ss_pred HHHHHHHhccCCCCCchHHHHHHHH
Q 007517 416 EVAAKKLLQLEPKNAGPYILLSNIY 440 (600)
Q Consensus 416 ~~~~~~~~~~~p~~~~~~~~l~~~~ 440 (600)
..+.+++.+..|+++ ....+++-|
T Consensus 561 ~~v~~R~~~~~P~~~-~~~~f~~ry 584 (679)
T 4e6h_A 561 RTLEKRFFEKFPEVN-KLEEFTNKY 584 (679)
T ss_dssp HHHHHHHHHHSTTCC-HHHHHHHHT
T ss_pred HHHHHHHHHhCCCCc-HHHHHHHHh
Confidence 999999999999874 444444444
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.42 E-value=2.7e-12 Score=126.17 Aligned_cols=198 Identities=13% Similarity=0.034 Sum_probs=136.8
Q ss_pred hhhHHHHHHHHHHcCCHHHHHhhhhhcCC-----CC----HHHHHHHHHHHHhcCC--------------------hHHH
Q 007517 262 VYVASVLITMYIKCGELVKGKLIFDNFAS-----KD----IVMWNSIISGYAQYGL--------------------GEKS 312 (600)
Q Consensus 262 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~--------------------~~~A 312 (600)
..++..+...|...|++++|...|++... ++ ..++..+...|...|+ +++|
T Consensus 83 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A 162 (338)
T 3ro2_A 83 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAA 162 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHH
Confidence 34455566666666777666666655432 11 2366667777777777 7777
Q ss_pred HHHHHHHHHC----CCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCC----hHHHHHHHHHHhhcCCHHHH
Q 007517 313 LKVFHEMFSS----GVMPD-DVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPK----TEHYACMVDLLGRAGQVEDA 383 (600)
Q Consensus 313 ~~~~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A 383 (600)
++.+++.... +..|. ...+..+...+...|++++|.+.++...+...-.++ ...+..+...|.+.|++++|
T Consensus 163 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 242 (338)
T 3ro2_A 163 VDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA 242 (338)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHH
Confidence 7777765432 11111 235666667778888888888888876543111111 33778888899999999999
Q ss_pred HHHHHhC----CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC------CchHHHHHHHHHhcCCchHH
Q 007517 384 MKLIEAM----PFEPD----AIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKN------AGPYILLSNIYASQGRFHDV 449 (600)
Q Consensus 384 ~~~~~~m----~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~a 449 (600)
.+.+++. +..++ ..++..+...+...|++++|...+++++++.|.. ...+..++.+|...|++++|
T Consensus 243 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 322 (338)
T 3ro2_A 243 SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQA 322 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHH
Confidence 9888876 11122 4567788888999999999999999988764432 34677899999999999999
Q ss_pred HHHHHHHHhC
Q 007517 450 AELRKNMRKR 459 (600)
Q Consensus 450 ~~~~~~m~~~ 459 (600)
.+.+++..+.
T Consensus 323 ~~~~~~a~~~ 332 (338)
T 3ro2_A 323 MHFAEKHLEI 332 (338)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHHH
Confidence 9999988764
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.41 E-value=9.9e-12 Score=124.24 Aligned_cols=225 Identities=9% Similarity=0.030 Sum_probs=190.8
Q ss_pred hhHhhHHHHHhhhcchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCC-HHHHHhhhhhcCC---CCHHHHHHHHHHH
Q 007517 228 PSLISVLSVCASLASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGE-LVKGKLIFDNFAS---KDIVMWNSIISGY 303 (600)
Q Consensus 228 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~-~~~A~~~~~~~~~---~~~~~~~~li~~~ 303 (600)
..+..+..++...|++++|...+..+++.. +.+..+++.+...|.+.|+ +++|...|+++.. .+...|+.+...+
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~ 176 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLV 176 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 345566677788899999999999999976 5578889999999999997 9999999998764 5789999999999
Q ss_pred HhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhh-cCCHH
Q 007517 304 AQYGLGEKSLKVFHEMFSSGVMP-DDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGR-AGQVE 381 (600)
Q Consensus 304 ~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~-~g~~~ 381 (600)
...|++++|+..|+++++. .| +...|..+..++...|++++|...++++.+.. +.+...|+.+..+|.+ .|..+
T Consensus 177 ~~~g~~~eAl~~~~kal~l--dP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~--P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 177 EWLRDPSQELEFIADILNQ--DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED--VRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHccCHHHHHHHHHHHHHh--CccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCcch
Confidence 9999999999999999985 45 45688888889999999999999999998852 4468899999999999 66657
Q ss_pred HH-----HHHHHhC-CCCC-CHHHHHHHHHHHHHcC--CHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcC--------
Q 007517 382 DA-----MKLIEAM-PFEP-DAIIWGSLLGACRTHM--KLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQG-------- 444 (600)
Q Consensus 382 ~A-----~~~~~~m-~~~p-~~~~~~~ll~~~~~~g--~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-------- 444 (600)
+| ++.+++. .+.| +...|..+...+...| ++++|...++++ +.+|+++..+..++.+|...|
T Consensus 253 eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~ 331 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKE 331 (382)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchH
Confidence 77 4667665 3345 5778999999998888 689999999998 899999999999999999875
Q ss_pred -CchHHHHHHHHH-Hh
Q 007517 445 -RFHDVAELRKNM-RK 458 (600)
Q Consensus 445 -~~~~a~~~~~~m-~~ 458 (600)
.+++|.++++++ .+
T Consensus 332 ~~~~~A~~~~~~l~~~ 347 (382)
T 2h6f_A 332 DILNKALELCEILAKE 347 (382)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHH
Confidence 358999999988 44
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.41 E-value=2e-11 Score=108.98 Aligned_cols=164 Identities=13% Similarity=0.100 Sum_probs=127.0
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHH
Q 007517 292 DIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPD-DVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACM 370 (600)
Q Consensus 292 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l 370 (600)
+...|..+...|.+.|++++|++.|++..+. .|+ ...+..+..++...|++++|...+....... +.+...+..+
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~ 79 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKA--DPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD--TTSAEAYYIL 79 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--chhHHHHHHH
Confidence 4566777777888888888888888887764 444 4467777777788888888888888776642 3456677777
Q ss_pred HHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchH
Q 007517 371 VDLLGRAGQVEDAMKLIEAM-PFEP-DAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHD 448 (600)
Q Consensus 371 i~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 448 (600)
...+...++++.|.+.+++. ...| +...|..+...+...|++++|+..++++++++|+++.++..++.+|...|++++
T Consensus 80 ~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 80 GSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHH
Confidence 78888888888888888776 2233 567788888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHhC
Q 007517 449 VAELRKNMRKR 459 (600)
Q Consensus 449 a~~~~~~m~~~ 459 (600)
|.+.+++..+.
T Consensus 160 A~~~~~~al~~ 170 (184)
T 3vtx_A 160 AVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhC
Confidence 88888887664
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.41 E-value=1.7e-12 Score=134.74 Aligned_cols=208 Identities=8% Similarity=0.032 Sum_probs=178.0
Q ss_pred hHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCH-HHHHhhhhhcCC---CCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 007517 243 LDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGEL-VKGKLIFDNFAS---KDIVMWNSIISGYAQYGLGEKSLKVFHE 318 (600)
Q Consensus 243 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~-~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~ 318 (600)
++.+.+.+....+.. +.+...+..+...|...|++ ++|.+.|++..+ .+...|..+...|.+.|++++|++.|++
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 455555565544432 45677888888889999999 999999987643 4678999999999999999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHhcc---------CCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhc--------CCHH
Q 007517 319 MFSSGVMPDDVTLVGVLSACSYT---------GKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRA--------GQVE 381 (600)
Q Consensus 319 m~~~g~~p~~~t~~~ll~a~~~~---------g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~--------g~~~ 381 (600)
..+. .|+...+..+..++... |++++|.+.|++..+.. +.+...|..+..+|... |+++
T Consensus 163 al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 163 ALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD--VLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 9875 68878888888999999 99999999999998752 44688999999999999 9999
Q ss_pred HHHHHHHhC-CCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHH
Q 007517 382 DAMKLIEAM-PFEP----DAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKN 455 (600)
Q Consensus 382 ~A~~~~~~m-~~~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 455 (600)
+|.+.|++. ...| +...|..+..++...|++++|...++++++++|+++..+..++.++...|++++|.+.+.+
T Consensus 239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999988 4455 7889999999999999999999999999999999999999999999999999999875543
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.40 E-value=1.6e-12 Score=131.87 Aligned_cols=154 Identities=12% Similarity=-0.005 Sum_probs=111.6
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCC----HHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCC----h
Q 007517 294 VMWNSIISGYAQYGLGEKSLKVFHEMFSSG-VMPD----DVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPK----T 364 (600)
Q Consensus 294 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~ 364 (600)
.+|..+...|...|++++|+..|++..+.. -.++ ..++..+...+...|++++|...++...+...-.++ .
T Consensus 188 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 267 (406)
T 3sf4_A 188 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 267 (406)
T ss_dssp HHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHH
Confidence 467777888888888888888888876421 0122 126667777888889999998888877643111111 5
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHhC----CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC------CCC
Q 007517 365 EHYACMVDLLGRAGQVEDAMKLIEAM----PFEPD----AIIWGSLLGACRTHMKLDLAEVAAKKLLQLEP------KNA 430 (600)
Q Consensus 365 ~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p------~~~ 430 (600)
.++..+...|.+.|++++|.+.+++. +..++ ..++..+...+...|++++|...+++++++.+ ...
T Consensus 268 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 347 (406)
T 3sf4_A 268 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGEL 347 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchh
Confidence 67888899999999999999998876 11122 55788888899999999999999999887632 224
Q ss_pred chHHHHHHHHHhcCCch
Q 007517 431 GPYILLSNIYASQGRFH 447 (600)
Q Consensus 431 ~~~~~l~~~~~~~g~~~ 447 (600)
.++..++.+|...|+..
T Consensus 348 ~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 348 TARLNLSDLQMVLGLSY 364 (406)
T ss_dssp HHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHhhHhH
Confidence 56777888888877664
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.38 E-value=2e-10 Score=111.91 Aligned_cols=218 Identities=11% Similarity=0.038 Sum_probs=159.9
Q ss_pred HHHHHHHHHHHHcCCccCchhHhhHHHHHh-------hhcch-------HHHHHHHHHHHHcCCCCchhhHHHHHHHHHH
Q 007517 209 LEVIDLFTLMQKEGVRVNFPSLISVLSVCA-------SLASL-------DHGRQVHAQLVRCQFDVDVYVASVLITMYIK 274 (600)
Q Consensus 209 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~-------~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~ 274 (600)
++|+..|++..... +-+...|......+. ..|+. ++|..+++..++.-.+.+...+..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 56666776666531 223334444444443 24664 7888888888774224456688888888888
Q ss_pred cCCHHHHHhhhhhcCC--C-CHH-HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-hccCCHHHHHH
Q 007517 275 CGELVKGKLIFDNFAS--K-DIV-MWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSAC-SYTGKVKEGRE 349 (600)
Q Consensus 275 ~g~~~~A~~~~~~~~~--~-~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~-~~~g~~~~a~~ 349 (600)
.|++++|..+|++... | +.. .|..++..+.+.|++++|..+|++..+.. +++...|....... ...|+.++|.+
T Consensus 112 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~ 190 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFK 190 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHH
Confidence 8999999998887754 2 343 78888888999999999999999998753 23333444333322 23699999999
Q ss_pred HHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-C---CCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 007517 350 IFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM-P---FEP--DAIIWGSLLGACRTHMKLDLAEVAAKKLL 423 (600)
Q Consensus 350 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~---~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 423 (600)
+|+...+.. +.+...|..+++.+.+.|++++|..+|++. . +.| ....|..++......|+.+.|..++++++
T Consensus 191 ~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~ 268 (308)
T 2ond_A 191 IFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999988753 346888999999999999999999999887 2 355 46789999999999999999999999999
Q ss_pred ccCCCCC
Q 007517 424 QLEPKNA 430 (600)
Q Consensus 424 ~~~p~~~ 430 (600)
+..|+++
T Consensus 269 ~~~p~~~ 275 (308)
T 2ond_A 269 TAFREEY 275 (308)
T ss_dssp HHTTTTT
T ss_pred HHccccc
Confidence 9999864
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.37 E-value=7.5e-12 Score=127.38 Aligned_cols=166 Identities=13% Similarity=0.051 Sum_probs=115.6
Q ss_pred hhHHHHHHHHHHcCC-----------------HHHHHhhhhhcCC-------C--CHHHHHHHHHHHHhcCChHHHHHHH
Q 007517 263 YVASVLITMYIKCGE-----------------LVKGKLIFDNFAS-------K--DIVMWNSIISGYAQYGLGEKSLKVF 316 (600)
Q Consensus 263 ~~~~~li~~y~~~g~-----------------~~~A~~~~~~~~~-------~--~~~~~~~li~~~~~~g~~~~A~~~~ 316 (600)
.++..+...|...|+ +++|...|++... + ...+|..+...|...|++++|++.|
T Consensus 167 ~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 246 (411)
T 4a1s_A 167 RALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHH 246 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 344555556666666 6666555554322 1 2346777788888888888888888
Q ss_pred HHHHHCCC-CCC----HHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCC----ChHHHHHHHHHHhhcCCHHHHHHHH
Q 007517 317 HEMFSSGV-MPD----DVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEP----KTEHYACMVDLLGRAGQVEDAMKLI 387 (600)
Q Consensus 317 ~~m~~~g~-~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p----~~~~~~~li~~~~~~g~~~~A~~~~ 387 (600)
++..+... .++ ..++..+...+...|++++|.+.+++..+...-.. ....+..+...|.+.|++++|.+.+
T Consensus 247 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 326 (411)
T 4a1s_A 247 QERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYH 326 (411)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 88765310 011 12667777888889999999998887765321011 1567888999999999999999998
Q ss_pred HhC-CC---CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC
Q 007517 388 EAM-PF---EPD----AIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPK 428 (600)
Q Consensus 388 ~~m-~~---~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 428 (600)
++. .+ .++ ..++..+...+...|++++|...+++++++.+.
T Consensus 327 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 375 (411)
T 4a1s_A 327 NRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXX 375 (411)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhh
Confidence 876 11 112 446788888999999999999999999887663
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.33 E-value=4.8e-11 Score=106.55 Aligned_cols=167 Identities=12% Similarity=0.047 Sum_probs=141.8
Q ss_pred CchhhHHHHHHHHHHcCCHHHHHhhhhhcCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 007517 260 VDVYVASVLITMYIKCGELVKGKLIFDNFAS---KDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLS 336 (600)
Q Consensus 260 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 336 (600)
.+..+|..+...|.+.|++++|.+.|++..+ .+..+|..+...|.+.|++++|+..+.+..... +.+...+..+..
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 3567888899999999999999999987653 478899999999999999999999999988752 334456666777
Q ss_pred HHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHH
Q 007517 337 ACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM-PFEP-DAIIWGSLLGACRTHMKLDL 414 (600)
Q Consensus 337 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~ 414 (600)
.+...++++.+.+.+....+.. +.+...+..+...|.+.|++++|.+.|++. ...| +...|..+..++...|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~--~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALN--TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHH
Confidence 8888999999999999988752 456888999999999999999999999987 3344 57889999999999999999
Q ss_pred HHHHHHHHhccCCCC
Q 007517 415 AEVAAKKLLQLEPKN 429 (600)
Q Consensus 415 a~~~~~~~~~~~p~~ 429 (600)
|...++++++++|++
T Consensus 160 A~~~~~~al~~~p~~ 174 (184)
T 3vtx_A 160 AVKYFKKALEKEEKK 174 (184)
T ss_dssp HHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHhCCccC
Confidence 999999999999976
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.32 E-value=3.2e-11 Score=118.41 Aligned_cols=135 Identities=12% Similarity=-0.005 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCC----h
Q 007517 294 VMWNSIISGYAQYGLGEKSLKVFHEMFSSGV-MPD----DVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPK----T 364 (600)
Q Consensus 294 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~ 364 (600)
.++..+...|...|++++|++.+++..+... .++ ..++..+...+...|++++|..+++...+...-.++ .
T Consensus 184 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 263 (338)
T 3ro2_A 184 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 263 (338)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHH
Confidence 3455566666666666666666666543210 011 124555666667777777777777665442110111 4
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHhC----CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC
Q 007517 365 EHYACMVDLLGRAGQVEDAMKLIEAM----PFEPD----AIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPK 428 (600)
Q Consensus 365 ~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 428 (600)
..+..+...|...|++++|.+.+++. +..++ ..++..+...+...|++++|...+++++++.+.
T Consensus 264 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 264 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 56777888888888888888887765 10112 446777888888899999999999998887654
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.30 E-value=4.5e-12 Score=123.38 Aligned_cols=238 Identities=13% Similarity=0.087 Sum_probs=124.3
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHHc-------CCccCchhHhhHHHHHhhhcchHHHHHHHHHHHHc------C
Q 007517 191 DDATWSGMIKVYERKGYELEVIDLFTLMQKE-------GVRVNFPSLISVLSVCASLASLDHGRQVHAQLVRC------Q 257 (600)
Q Consensus 191 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~------~ 257 (600)
+..+|..+...|...|++++|+.+|+++.+. ..+.....+..+...+...|++++|...+..+.+. +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 3456888888899999999999999888763 11222334445555555556666666555555432 1
Q ss_pred CCCchhhHHHHHHHHHHcCCHHHHHhhhhhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC------CCCCC-HHH
Q 007517 258 FDVDVYVASVLITMYIKCGELVKGKLIFDNFASKDIVMWNSIISGYAQYGLGEKSLKVFHEMFSS------GVMPD-DVT 330 (600)
Q Consensus 258 ~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~-~~t 330 (600)
..+ ....+|..+...|...|++++|++.|+++.+. +-.|+ ...
T Consensus 106 ~~~------------------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 155 (311)
T 3nf1_A 106 DHP------------------------------AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQ 155 (311)
T ss_dssp TCH------------------------------HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCh------------------------------HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Confidence 101 12234455555555555555555555555432 11122 224
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHhcC-----C-CCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-C---------CCC
Q 007517 331 LVGVLSACSYTGKVKEGREIFESMKSKY-----L-VEPKTEHYACMVDLLGRAGQVEDAMKLIEAM-P---------FEP 394 (600)
Q Consensus 331 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~-----~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~---------~~p 394 (600)
+..+...+...|++++|.++++.+.+.. + .+.....+..+...|.+.|++++|.+.++++ . ..+
T Consensus 156 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 235 (311)
T 3nf1_A 156 LNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDD 235 (311)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCc
Confidence 4455555666666666666666554420 0 1112345566666666666666666666554 0 011
Q ss_pred C-------HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007517 395 D-------AIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMRK 458 (600)
Q Consensus 395 ~-------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 458 (600)
. ...+..+...+...+.+.++...++++....|..+..+..++.+|...|++++|.+++++..+
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 236 ENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp --CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 1 111222223333445555556666666666677767777788888888888888888777654
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.30 E-value=1e-10 Score=117.93 Aligned_cols=223 Identities=7% Similarity=-0.026 Sum_probs=141.5
Q ss_pred HHHhhhcchHHHHHHHHHHHHc----CCCC-chhhHHHHHHHHHHcCCHHHHHhhhhhcCC-----C-----CHHHHHHH
Q 007517 235 SVCASLASLDHGRQVHAQLVRC----QFDV-DVYVASVLITMYIKCGELVKGKLIFDNFAS-----K-----DIVMWNSI 299 (600)
Q Consensus 235 ~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~-----~~~~~~~l 299 (600)
..+...|++++|...+..+.+. +-++ ...++..+...|...|++++|...|++... + ...+++.+
T Consensus 111 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 190 (383)
T 3ulq_A 111 MYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLF 190 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHH
Confidence 3445566666666666666553 1111 234566677777777777777776665432 1 13467777
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCC-CCCH----HHHHHHHHHHhccCCHHHHHHHHHHhHhc---CCC-CCChHHHHHH
Q 007517 300 ISGYAQYGLGEKSLKVFHEMFSSGV-MPDD----VTLVGVLSACSYTGKVKEGREIFESMKSK---YLV-EPKTEHYACM 370 (600)
Q Consensus 300 i~~~~~~g~~~~A~~~~~~m~~~g~-~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~~~~~---~~~-~p~~~~~~~l 370 (600)
...|...|++++|++.|++..+... .++. .++..+...+...|++++|.+.+++..+. .+. +....++..+
T Consensus 191 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 270 (383)
T 3ulq_A 191 ATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLI 270 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHH
Confidence 7778888888888888877654210 1111 35666777777888888888888776551 112 2235667778
Q ss_pred HHHHhhcCCHHHHHHHHHhC-CC-----CCC-HHHHHHHHHHHHHcCC---HHHHHHHHHHHhccCCCCCchHHHHHHHH
Q 007517 371 VDLLGRAGQVEDAMKLIEAM-PF-----EPD-AIIWGSLLGACRTHMK---LDLAEVAAKKLLQLEPKNAGPYILLSNIY 440 (600)
Q Consensus 371 i~~~~~~g~~~~A~~~~~~m-~~-----~p~-~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 440 (600)
...|.+.|++++|.+.+++. .+ .|. ...+..+...+...|+ .++|...+++. ...|.....+..++.+|
T Consensus 271 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y 349 (383)
T 3ulq_A 271 TQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAKYY 349 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHH
Confidence 88888888888888887765 10 121 2234556666777777 66666666665 23333345677788888
Q ss_pred HhcCCchHHHHHHHHHHh
Q 007517 441 ASQGRFHDVAELRKNMRK 458 (600)
Q Consensus 441 ~~~g~~~~a~~~~~~m~~ 458 (600)
...|++++|.+.+++..+
T Consensus 350 ~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 350 HERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHH
Confidence 888888888888887764
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=7e-11 Score=127.58 Aligned_cols=163 Identities=15% Similarity=0.179 Sum_probs=138.9
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHH
Q 007517 292 DIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPD-DVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACM 370 (600)
Q Consensus 292 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l 370 (600)
+..+|+.|...|.+.|++++|++.|++..+. .|+ ...+..+..++.+.|++++|.+.|++..+.. +.+...|..+
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l--~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~--P~~~~a~~nL 83 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS--PTFADAYSNM 83 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHH
Confidence 4567888888888888889999998888874 555 4578888888888999999999998887742 3347889999
Q ss_pred HHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchH
Q 007517 371 VDLLGRAGQVEDAMKLIEAM-PFEP-DAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHD 448 (600)
Q Consensus 371 i~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 448 (600)
..+|.+.|++++|.+.|++. .+.| +...|..+..++...|++++|+..++++++++|+++..+..++.+|...|+|++
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHH
Confidence 99999999999999999887 4455 477899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHh
Q 007517 449 VAELRKNMRK 458 (600)
Q Consensus 449 a~~~~~~m~~ 458 (600)
|.+.+++..+
T Consensus 164 A~~~~~kal~ 173 (723)
T 4gyw_A 164 YDERMKKLVS 173 (723)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9998887754
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.29 E-value=5.2e-11 Score=120.02 Aligned_cols=227 Identities=10% Similarity=0.002 Sum_probs=154.0
Q ss_pred HHHHHcCChHHHHHHHHHHHHc----CCcc-CchhHhhHHHHHhhhcchHHHHHHHHHHHHcCC------CCchhhHHHH
Q 007517 200 KVYERKGYELEVIDLFTLMQKE----GVRV-NFPSLISVLSVCASLASLDHGRQVHAQLVRCQF------DVDVYVASVL 268 (600)
Q Consensus 200 ~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~------~~~~~~~~~l 268 (600)
..+...|++++|+..|++.... +-.+ ...++..+...+...|+++.|...+....+... +....+++.+
T Consensus 111 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 190 (383)
T 3ulq_A 111 MYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLF 190 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHH
Confidence 3444555555555555555442 1011 123344445555555555555555555544210 1123466677
Q ss_pred HHHHHHcCCHHHHHhhhhhcCC-----CC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCCC-HHHHHHH
Q 007517 269 ITMYIKCGELVKGKLIFDNFAS-----KD----IVMWNSIISGYAQYGLGEKSLKVFHEMFSS----GVMPD-DVTLVGV 334 (600)
Q Consensus 269 i~~y~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~t~~~l 334 (600)
...|...|++++|...|++... ++ ..+|+.+...|...|++++|++.|++..+. +..|+ ..++..+
T Consensus 191 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 270 (383)
T 3ulq_A 191 ATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLI 270 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHH
Confidence 7888888888888888876543 11 247888899999999999999999988762 23243 4578888
Q ss_pred HHHHhccCCHHHHHHHHHHhHhcC---CCCCChHHHHHHHHHHhhcCC---HHHHHHHHHhCCCCCC-HHHHHHHHHHHH
Q 007517 335 LSACSYTGKVKEGREIFESMKSKY---LVEPKTEHYACMVDLLGRAGQ---VEDAMKLIEAMPFEPD-AIIWGSLLGACR 407 (600)
Q Consensus 335 l~a~~~~g~~~~a~~~~~~~~~~~---~~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~p~-~~~~~~ll~~~~ 407 (600)
..++...|++++|...+++..+.. +-+.....+..+...|...|+ +++|..++++.+..|+ ...+..+...|.
T Consensus 271 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~ 350 (383)
T 3ulq_A 271 TQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKYYH 350 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 889999999999999998876531 111123346778899999999 9999999999864444 346778889999
Q ss_pred HcCCHHHHHHHHHHHhccC
Q 007517 408 THMKLDLAEVAAKKLLQLE 426 (600)
Q Consensus 408 ~~g~~~~a~~~~~~~~~~~ 426 (600)
..|++++|...+++++++.
T Consensus 351 ~~g~~~~A~~~~~~al~~~ 369 (383)
T 3ulq_A 351 ERKNFQKASAYFLKVEQVR 369 (383)
T ss_dssp HTTCHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHH
Confidence 9999999999999988753
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.27 E-value=1.7e-10 Score=102.51 Aligned_cols=160 Identities=15% Similarity=0.072 Sum_probs=91.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHh
Q 007517 296 WNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLG 375 (600)
Q Consensus 296 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~ 375 (600)
|..+...+...|++++|+..|+++.+.. +.+...+..+...+...|++++|..+++.+.+.. +.+...+..+...|.
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 11 YRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA--PDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHH
Confidence 3334444444445555555444443321 1233344444444555555555555555544431 234555555666666
Q ss_pred hcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHH
Q 007517 376 RAGQVEDAMKLIEAM-P-FEPDAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELR 453 (600)
Q Consensus 376 ~~g~~~~A~~~~~~m-~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 453 (600)
..|++++|.+.++++ . .+.+...|..+...+...|++++|...++++++..|+++..+..++.+|...|++++|.+.+
T Consensus 88 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 167 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHF 167 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 666666666666655 1 12345566666667777777777777777777777777667777777777777777777777
Q ss_pred HHHHh
Q 007517 454 KNMRK 458 (600)
Q Consensus 454 ~~m~~ 458 (600)
+...+
T Consensus 168 ~~~~~ 172 (186)
T 3as5_A 168 KKANE 172 (186)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76654
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.27 E-value=1.6e-11 Score=119.54 Aligned_cols=238 Identities=11% Similarity=0.060 Sum_probs=142.2
Q ss_pred ccchhHHHHHHHhcCCHHHHHHHHHhccc--------C---ChhhHHHHHHHHHHcCChHHHHHHHHHHHHc------CC
Q 007517 161 VVASNSMILGLGQNGEVQKARVVFDQMRE--------K---DDATWSGMIKVYERKGYELEVIDLFTLMQKE------GV 223 (600)
Q Consensus 161 ~~~~~~li~~~~~~g~~~~A~~~f~~~~~--------~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~ 223 (600)
..++..+...|...|++++|...|+++.+ . ...++..+...|...|++++|+..|++.... +-
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 35677888999999999999999998864 2 3456888999999999999999999998764 21
Q ss_pred cc-CchhHhhHHHHHhhhcchHHHHHHHHHHHHc------CCCCchhhHHHHHHHHHHcCCHHHHHhhhhhcCCCCHHHH
Q 007517 224 RV-NFPSLISVLSVCASLASLDHGRQVHAQLVRC------QFDVDVYVASVLITMYIKCGELVKGKLIFDNFASKDIVMW 296 (600)
Q Consensus 224 ~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~ 296 (600)
.| ...++..+...+...|++++|...+..+.+. +..+. ...+|
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~------------------------------~~~~~ 156 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPD------------------------------VAKQL 156 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHH------------------------------HHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChH------------------------------HHHHH
Confidence 22 3455666777777888888888887776653 11111 12334
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHC------CCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHhHhcC------CCCC-
Q 007517 297 NSIISGYAQYGLGEKSLKVFHEMFSS------GVMPDD-VTLVGVLSACSYTGKVKEGREIFESMKSKY------LVEP- 362 (600)
Q Consensus 297 ~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~------~~~p- 362 (600)
..+...|...|++++|+++|+++.+. +..|+. .++..+..++...|++++|.++++++.+.. ...+
T Consensus 157 ~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 236 (311)
T 3nf1_A 157 NNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDE 236 (311)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcc
Confidence 44444555555555555555554432 112221 234445555555566666655555554310 0011
Q ss_pred ------ChHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC
Q 007517 363 ------KTEHYACMVDLLGRAGQVEDAMKLIEAMP-FEP-DAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPK 428 (600)
Q Consensus 363 ------~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 428 (600)
....+..+...+...+.+.+|...++... ..| +..+|..+...|...|++++|...+++++++.|.
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 237 NKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp -CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred hHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 11223333344445556666666666652 233 3567888999999999999999999999887764
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.24 E-value=2.9e-09 Score=106.68 Aligned_cols=258 Identities=12% Similarity=0.013 Sum_probs=156.6
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCccCch----hHhhHHHHHhhhcchHHHHHHHHHHHHcCCC-Cc----hhhHHHHHHH
Q 007517 201 VYERKGYELEVIDLFTLMQKEGVRVNFP----SLISVLSVCASLASLDHGRQVHAQLVRCQFD-VD----VYVASVLITM 271 (600)
Q Consensus 201 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~----t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~li~~ 271 (600)
.+...|++++|...+++........+.. .+..+...+...|+++.|...+....+.... .+ ..+...+...
T Consensus 23 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 102 (373)
T 1hz4_A 23 VAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEI 102 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 3445555566655555554432111111 2233334444556666665555554432100 01 1234456666
Q ss_pred HHHcCCHHHHHhhhhhcCC----------C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC--C--CHHHHHHHHH
Q 007517 272 YIKCGELVKGKLIFDNFAS----------K-DIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVM--P--DDVTLVGVLS 336 (600)
Q Consensus 272 y~~~g~~~~A~~~~~~~~~----------~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p--~~~t~~~ll~ 336 (600)
|...|++++|...+++... + ....+..+...|...|++++|...+++....... | ...++..+..
T Consensus 103 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 182 (373)
T 1hz4_A 103 LFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQ 182 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHH
Confidence 7777777777777765432 1 1245566777788888888888888887653211 1 1235666667
Q ss_pred HHhccCCHHHHHHHHHHhHhcCCCCCChHHHH-----HHHHHHhhcCCHHHHHHHHHhC-CCCCC-----HHHHHHHHHH
Q 007517 337 ACSYTGKVKEGREIFESMKSKYLVEPKTEHYA-----CMVDLLGRAGQVEDAMKLIEAM-PFEPD-----AIIWGSLLGA 405 (600)
Q Consensus 337 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~-----~li~~~~~~g~~~~A~~~~~~m-~~~p~-----~~~~~~ll~~ 405 (600)
.+...|++++|...++.......-......+. ..+..+...|++++|.+.+++. ...|. ...+..+...
T Consensus 183 ~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~ 262 (373)
T 1hz4_A 183 CSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARA 262 (373)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHH
Confidence 77888888888888887764311111111121 2345577889999999998887 22221 3356677788
Q ss_pred HHHcCCHHHHHHHHHHHhccCCCC------CchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007517 406 CRTHMKLDLAEVAAKKLLQLEPKN------AGPYILLSNIYASQGRFHDVAELRKNMRK 458 (600)
Q Consensus 406 ~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 458 (600)
+...|++++|...++++.+..+.. ...+..++.+|...|+.++|...+++..+
T Consensus 263 ~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 263 QILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 888899999999998887653221 13566788889999999999998888764
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.23 E-value=8.4e-10 Score=107.48 Aligned_cols=212 Identities=10% Similarity=0.053 Sum_probs=171.6
Q ss_pred HHHHHHHHHHHHcCCCCchhhHHHHHHHHH-------HcCCH-------HHHHhhhhhcCC----CCHHHHHHHHHHHHh
Q 007517 244 DHGRQVHAQLVRCQFDVDVYVASVLITMYI-------KCGEL-------VKGKLIFDNFAS----KDIVMWNSIISGYAQ 305 (600)
Q Consensus 244 ~~a~~~~~~~~~~~~~~~~~~~~~li~~y~-------~~g~~-------~~A~~~~~~~~~----~~~~~~~~li~~~~~ 305 (600)
+.|..+++++++.. +.++.+|..++..+. +.|++ ++|..+|++... .+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 56778888888764 567778888887776 35886 899999987654 366799999999999
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHh-hcCCHHH
Q 007517 306 YGLGEKSLKVFHEMFSSGVMPDDV--TLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLG-RAGQVED 382 (600)
Q Consensus 306 ~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~-~~g~~~~ 382 (600)
.|++++|.++|++..+ +.|+.. .|..+...+.+.|++++|..+|++..+.. +++...|...+.... ..|++++
T Consensus 112 ~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--p~~~~~~~~~a~~~~~~~~~~~~ 187 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA--RTRHHVYVTAALMEYYCSKDKSV 187 (308)
T ss_dssp TTCHHHHHHHHHHHHT--SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST--TCCTHHHHHHHHHHHHTSCCHHH
T ss_pred cCCHHHHHHHHHHHHh--ccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCHHH
Confidence 9999999999999997 466543 78888888899999999999999998742 345566655554433 3699999
Q ss_pred HHHHHHhC-CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc---CCC-CCchHHHHHHHHHhcCCchHHHHHHHHH
Q 007517 383 AMKLIEAM-PFE-PDAIIWGSLLGACRTHMKLDLAEVAAKKLLQL---EPK-NAGPYILLSNIYASQGRFHDVAELRKNM 456 (600)
Q Consensus 383 A~~~~~~m-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m 456 (600)
|.++|++. ... .+...|..++..+...|+.++|..+|+++++. .|+ ....+..++..+...|+.++|..+++++
T Consensus 188 A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 188 AFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999987 222 36788999999999999999999999999995 553 5567888899999999999999999998
Q ss_pred HhCC
Q 007517 457 RKRN 460 (600)
Q Consensus 457 ~~~g 460 (600)
.+..
T Consensus 268 ~~~~ 271 (308)
T 2ond_A 268 FTAF 271 (308)
T ss_dssp HHHT
T ss_pred HHHc
Confidence 8653
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.22 E-value=5.1e-10 Score=99.36 Aligned_cols=168 Identities=8% Similarity=-0.004 Sum_probs=143.9
Q ss_pred hhhHHHHHHHHHHcCCHHHHHhhhhhcCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007517 262 VYVASVLITMYIKCGELVKGKLIFDNFAS---KDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSAC 338 (600)
Q Consensus 262 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 338 (600)
...+..+...|...|++++|...|+++.. .+...|..+...|...|++++|.+.++++.+.. +.+...+..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 34566778889999999999999998865 367889999999999999999999999998752 34566788888899
Q ss_pred hccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcCCHHHHH
Q 007517 339 SYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM-PF-EPDAIIWGSLLGACRTHMKLDLAE 416 (600)
Q Consensus 339 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~g~~~~a~ 416 (600)
...|++++|.++++.+.+.. +.+...+..+...|.+.|++++|.+.++++ .. +.+...|..+...+...|++++|.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEAN--PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcC--cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999988753 456888999999999999999999999987 22 346788999999999999999999
Q ss_pred HHHHHHhccCCCCCch
Q 007517 417 VAAKKLLQLEPKNAGP 432 (600)
Q Consensus 417 ~~~~~~~~~~p~~~~~ 432 (600)
..++++++..|+++..
T Consensus 165 ~~~~~~~~~~~~~~~~ 180 (186)
T 3as5_A 165 PHFKKANELDEGASVE 180 (186)
T ss_dssp HHHHHHHHHHHCCCGG
T ss_pred HHHHHHHHcCCCchhh
Confidence 9999999998887543
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.22 E-value=3.1e-10 Score=105.13 Aligned_cols=188 Identities=10% Similarity=-0.050 Sum_probs=99.4
Q ss_pred chhhHHHHHHHHHHcCCHHHHHhhhhhcCC----CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHH
Q 007517 261 DVYVASVLITMYIKCGELVKGKLIFDNFAS----KDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDD-VTLVGVL 335 (600)
Q Consensus 261 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll 335 (600)
|+..+..+...|.+.|++++|...|+.... ++...|..+...|...|++++|++.|++..+. .|+. ..+..+.
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~ 83 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK--NYNLANAYIGKS 83 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh--CcchHHHHHHHH
Confidence 345555555666666666666666654432 44455555556666666666666666666553 3332 3455555
Q ss_pred HHHhccCCHHHHHHHHHHhHhcCCCCCCh-------HHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC---HHHHHHHHH
Q 007517 336 SACSYTGKVKEGREIFESMKSKYLVEPKT-------EHYACMVDLLGRAGQVEDAMKLIEAM-PFEPD---AIIWGSLLG 404 (600)
Q Consensus 336 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-------~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~---~~~~~~ll~ 404 (600)
.++...|++++|.+.++...+.. +.+. ..|..+...+.+.|++++|.+.|++. ...|+ ...|..+..
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAV--PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHH
Confidence 55666666666666666655532 1223 33555555555666666666666554 33443 234444444
Q ss_pred HHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007517 405 ACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMRKR 459 (600)
Q Consensus 405 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 459 (600)
.+.. .+...++++..+.+.++..|..+ .....|.+++|...+++..+.
T Consensus 162 ~~~~-----~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~A~~~~~~a~~l 209 (228)
T 4i17_A 162 LFYN-----NGADVLRKATPLASSNKEKYASE--KAKADAAFKKAVDYLGEAVTL 209 (228)
T ss_dssp HHHH-----HHHHHHHHHGGGTTTCHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHH-----HHHHHHHHHHhcccCCHHHHHHH--HHHHHHHHHHHHHHHHHHhhc
Confidence 4432 23334455555544443333222 223344458888888887664
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.22 E-value=5.4e-09 Score=111.56 Aligned_cols=214 Identities=9% Similarity=-0.065 Sum_probs=163.3
Q ss_pred HHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHH-hhhhhcCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 007517 245 HGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGK-LIFDNFAS---KDIVMWNSIISGYAQYGLGEKSLKVFHEMF 320 (600)
Q Consensus 245 ~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~-~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 320 (600)
....++++.+.. ++....+|-..+..+.+.|+.++|. ++|++... ++...|-..+...-+.|++++|.++|+++.
T Consensus 327 Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l 405 (679)
T 4e6h_A 327 RMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCI 405 (679)
T ss_dssp HHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 455677777775 3557788888888888999999996 99987653 466778888888999999999999999998
Q ss_pred HCC---------CCCC------------HHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcC-
Q 007517 321 SSG---------VMPD------------DVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAG- 378 (600)
Q Consensus 321 ~~g---------~~p~------------~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g- 378 (600)
... -.|+ ...|...+....+.|..+.|+++|..+.+..+ .+....|...+.+-.+.|
T Consensus 406 ~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~~~ 484 (679)
T 4e6h_A 406 DRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKK-LVTPDIYLENAYIEYHISK 484 (679)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTTTS
T ss_pred HHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHhCC
Confidence 631 0142 23566677777788999999999999987411 223455555555555555
Q ss_pred CHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC---CCchHHHHHHHHHhcCCchHHHHHH
Q 007517 379 QVEDAMKLIEAM--PFEPDAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPK---NAGPYILLSNIYASQGRFHDVAELR 453 (600)
Q Consensus 379 ~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~~g~~~~a~~~~ 453 (600)
+.+.|.++|+.. .+.-+...|...+......|+.+.|..+|++++...|+ ....+...+..-...|+.+.+.++.
T Consensus 485 d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~ 564 (679)
T 4e6h_A 485 DTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLE 564 (679)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHH
T ss_pred CHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 599999999987 22346777888888888899999999999999998773 3345666777777889999999999
Q ss_pred HHHHhCC
Q 007517 454 KNMRKRN 460 (600)
Q Consensus 454 ~~m~~~g 460 (600)
+++.+.-
T Consensus 565 ~R~~~~~ 571 (679)
T 4e6h_A 565 KRFFEKF 571 (679)
T ss_dssp HHHHHHS
T ss_pred HHHHHhC
Confidence 9998753
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.20 E-value=6.2e-10 Score=103.09 Aligned_cols=204 Identities=10% Similarity=0.041 Sum_probs=159.9
Q ss_pred cCchhHhhHHHHHhhhcchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHhhhhhcCC---CCHHHHHHHHH
Q 007517 225 VNFPSLISVLSVCASLASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFAS---KDIVMWNSIIS 301 (600)
Q Consensus 225 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~ 301 (600)
.|+..+......+...|++++|...+..+++...+++...+..+...|.+.|++++|...|++... .+...|..+..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 355777888888999999999999999999987547777777799999999999999999998754 36678999999
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCC-H-------HHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCC---hHHHHHH
Q 007517 302 GYAQYGLGEKSLKVFHEMFSSGVMPD-D-------VTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPK---TEHYACM 370 (600)
Q Consensus 302 ~~~~~g~~~~A~~~~~~m~~~g~~p~-~-------~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~l 370 (600)
.|...|++++|++.|++..+. .|+ . ..+..+-..+...|++++|.+.|++..+. .|+ ...+..+
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~~l 159 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV---TSKKWKTDALYSL 159 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS---SCHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc---CCCcccHHHHHHH
Confidence 999999999999999999875 454 3 34666777888999999999999998863 454 6778888
Q ss_pred HHHHhhcCCH--HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHH
Q 007517 371 VDLLGRAGQV--EDAMKLIEAMPFEPDAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIY 440 (600)
Q Consensus 371 i~~~~~~g~~--~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 440 (600)
...|...|+. ++|..+ . ..+...+..+. ....+.+++|...++++++++|+++.....+..+.
T Consensus 160 ~~~~~~~~~~~~~~a~~~----~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~ 224 (228)
T 4i17_A 160 GVLFYNNGADVLRKATPL----A-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVK 224 (228)
T ss_dssp HHHHHHHHHHHHHHHGGG----T-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhc----c-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 8888776654 333222 1 22344444433 34456789999999999999999977766665543
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.19 E-value=4.9e-10 Score=112.64 Aligned_cols=221 Identities=11% Similarity=0.028 Sum_probs=136.1
Q ss_pred HhhhcchHHHHHHHHHHHHcC--CC---CchhhHHHHHHHHHHcCCHHHHHhhhhhcCC-----C-----CHHHHHHHHH
Q 007517 237 CASLASLDHGRQVHAQLVRCQ--FD---VDVYVASVLITMYIKCGELVKGKLIFDNFAS-----K-----DIVMWNSIIS 301 (600)
Q Consensus 237 ~~~~~~~~~a~~~~~~~~~~~--~~---~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~-----~~~~~~~li~ 301 (600)
+...|+++.|...+..+.+.. .+ ....++..+...|...|+++.|...+++... + ...+++.+..
T Consensus 111 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~ 190 (378)
T 3q15_A 111 EFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAG 190 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHH
T ss_pred HHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHH
Confidence 445566666666666665431 11 1234556666777777777777666655432 1 1346677777
Q ss_pred HHHhcCChHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHhcC---CCCCChHHHHHHHHH
Q 007517 302 GYAQYGLGEKSLKVFHEMFSS----GVMPD-DVTLVGVLSACSYTGKVKEGREIFESMKSKY---LVEPKTEHYACMVDL 373 (600)
Q Consensus 302 ~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~~p~~~~~~~li~~ 373 (600)
.|...|++++|++.|++..+. +-.+. ..++..+..++...|++++|.+.+++..+.. +.+....++..+...
T Consensus 191 ~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~ 270 (378)
T 3q15_A 191 NYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWT 270 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHH
Confidence 777888888888877776542 11111 2355666677777888888888877766510 112235667777888
Q ss_pred HhhcCCHHHHHHHHHhC----CC--CCC-HHHHHHHHHHHHHcCC---HHHHHHHHHHHhccCCCCCchHHHHHHHHHhc
Q 007517 374 LGRAGQVEDAMKLIEAM----PF--EPD-AIIWGSLLGACRTHMK---LDLAEVAAKKLLQLEPKNAGPYILLSNIYASQ 443 (600)
Q Consensus 374 ~~~~g~~~~A~~~~~~m----~~--~p~-~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 443 (600)
|.+.|++++|.+.+++. +. .|. ...+..+...+...++ ..+|...+++. ...|.....+..++..|...
T Consensus 271 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~ 349 (378)
T 3q15_A 271 LCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARSAAAVFESS 349 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHT
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHHHHHHHHHC
Confidence 88888888888887765 11 122 3344555555666666 66666666652 22233335566788888888
Q ss_pred CCchHHHHHHHHHHh
Q 007517 444 GRFHDVAELRKNMRK 458 (600)
Q Consensus 444 g~~~~a~~~~~~m~~ 458 (600)
|++++|.+.+++..+
T Consensus 350 g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 350 CHFEQAAAFYRKVLK 364 (378)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 888888888877653
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.18 E-value=5.6e-10 Score=115.69 Aligned_cols=177 Identities=9% Similarity=-0.012 Sum_probs=155.4
Q ss_pred HHHHHhhhhhcCC---CCHHHHHHHHHHHHhcCCh-HHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHH
Q 007517 278 LVKGKLIFDNFAS---KDIVMWNSIISGYAQYGLG-EKSLKVFHEMFSSGVMPD-DVTLVGVLSACSYTGKVKEGREIFE 352 (600)
Q Consensus 278 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~ 352 (600)
++++...++.... .+...|..+...|...|++ ++|++.|++..+. .|+ ...+..+..++...|++++|.+.|+
T Consensus 84 ~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKL--EPELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4555666655432 4788999999999999999 9999999999875 454 6688889999999999999999999
Q ss_pred HhHhcCCCCCChHHHHHHHHHHhhc---------CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHc--------CCHH
Q 007517 353 SMKSKYLVEPKTEHYACMVDLLGRA---------GQVEDAMKLIEAM-PFEP-DAIIWGSLLGACRTH--------MKLD 413 (600)
Q Consensus 353 ~~~~~~~~~p~~~~~~~li~~~~~~---------g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~--------g~~~ 413 (600)
...+. .|+...+..+...|... |++++|.+.+++. ...| +...|..+..++... |+++
T Consensus 162 ~al~~---~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GALTH---CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHTT---CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHhh---CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 99864 57889999999999999 9999999999987 3344 588899999999998 9999
Q ss_pred HHHHHHHHHhccCC---CCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007517 414 LAEVAAKKLLQLEP---KNAGPYILLSNIYASQGRFHDVAELRKNMRKR 459 (600)
Q Consensus 414 ~a~~~~~~~~~~~p---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 459 (600)
+|+..++++++++| +++..+..++.+|...|++++|.+.+++..+.
T Consensus 239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 287 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAAL 287 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999999999999 89999999999999999999999999998764
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.15 E-value=5.1e-09 Score=105.17 Aligned_cols=225 Identities=11% Similarity=0.021 Sum_probs=154.6
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCc-cC----chhHhhHHHHHhhhcchHHHHHHHHHHHHcCC-----C-CchhhHHHH
Q 007517 200 KVYERKGYELEVIDLFTLMQKEGVR-VN----FPSLISVLSVCASLASLDHGRQVHAQLVRCQF-----D-VDVYVASVL 268 (600)
Q Consensus 200 ~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-----~-~~~~~~~~l 268 (600)
..+...|++++|+..|++....... +| ..++..+...+...|+++.|...+....+... . ....+++.+
T Consensus 109 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 188 (378)
T 3q15_A 109 MYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVI 188 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHH
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHH
Confidence 3445566666666666665542111 11 23445555556666666666666665554210 1 124456677
Q ss_pred HHHHHHcCCHHHHHhhhhhcCC-----C----CHHHHHHHHHHHHhcCChHHHHHHHHHHHH-----CCCCCCHHHHHHH
Q 007517 269 ITMYIKCGELVKGKLIFDNFAS-----K----DIVMWNSIISGYAQYGLGEKSLKVFHEMFS-----SGVMPDDVTLVGV 334 (600)
Q Consensus 269 i~~y~~~g~~~~A~~~~~~~~~-----~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~t~~~l 334 (600)
...|...|++++|...|++... + ...+++.+...|...|++++|++.|++..+ .. +....++..+
T Consensus 189 g~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~l 267 (378)
T 3q15_A 189 AGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVLFGL 267 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHHHH
Confidence 7888888888888888776543 1 235678888899999999999999998876 32 2224577778
Q ss_pred HHHHhccCCHHHHHHHHHHhHhcCCC---CCChHHHHHHHHHHhhcCC---HHHHHHHHHhCCCCCC-HHHHHHHHHHHH
Q 007517 335 LSACSYTGKVKEGREIFESMKSKYLV---EPKTEHYACMVDLLGRAGQ---VEDAMKLIEAMPFEPD-AIIWGSLLGACR 407 (600)
Q Consensus 335 l~a~~~~g~~~~a~~~~~~~~~~~~~---~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~p~-~~~~~~ll~~~~ 407 (600)
..++...|++++|..++++..+...- +.....+..+...|...|+ +++|...+++.+..|+ ...+..+...|.
T Consensus 268 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~ 347 (378)
T 3q15_A 268 SWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVFE 347 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHH
Confidence 88899999999999999988764321 2224567777888888888 9999999998754444 345667888899
Q ss_pred HcCCHHHHHHHHHHHhcc
Q 007517 408 THMKLDLAEVAAKKLLQL 425 (600)
Q Consensus 408 ~~g~~~~a~~~~~~~~~~ 425 (600)
..|++++|...++++++.
T Consensus 348 ~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 348 SSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHH
Confidence 999999999999988763
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.13 E-value=6.9e-09 Score=103.93 Aligned_cols=259 Identities=10% Similarity=-0.016 Sum_probs=160.6
Q ss_pred HHHHhcCCHHHHHHHHHhccc----CCh----hhHHHHHHHHHHcCChHHHHHHHHHHHHcCCc-cC----chhHhhHHH
Q 007517 169 LGLGQNGEVQKARVVFDQMRE----KDD----ATWSGMIKVYERKGYELEVIDLFTLMQKEGVR-VN----FPSLISVLS 235 (600)
Q Consensus 169 ~~~~~~g~~~~A~~~f~~~~~----~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~t~~~ll~ 235 (600)
..+...|++++|...+++... .+. .+++.+...+...|++++|...+++....... ++ ..++..+..
T Consensus 22 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~ 101 (373)
T 1hz4_A 22 QVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSE 101 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 344556666666666555332 111 13445556666677777777777665542111 11 112344455
Q ss_pred HHhhhcchHHHHHHHHHHHHc----CCC--C-chhhHHHHHHHHHHcCCHHHHHhhhhhcCC--C------CHHHHHHHH
Q 007517 236 VCASLASLDHGRQVHAQLVRC----QFD--V-DVYVASVLITMYIKCGELVKGKLIFDNFAS--K------DIVMWNSII 300 (600)
Q Consensus 236 ~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~------~~~~~~~li 300 (600)
.+...|++++|...+....+. +.+ | ....+..+...|...|++++|...+++... + ...+|..+.
T Consensus 102 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la 181 (373)
T 1hz4_A 102 ILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLI 181 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHH
Confidence 566677777777777666542 211 2 234555677778888888888888776432 1 235677788
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHH-----HHHHHHhccCCHHHHHHHHHHhHhcCCCCC--ChHHHHHHHH
Q 007517 301 SGYAQYGLGEKSLKVFHEMFSSGVMPDD-VTLV-----GVLSACSYTGKVKEGREIFESMKSKYLVEP--KTEHYACMVD 372 (600)
Q Consensus 301 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~-----~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p--~~~~~~~li~ 372 (600)
..+...|++++|...+++.....-.++. ..+. .....+...|+.++|...++.......-.+ ....+..+..
T Consensus 182 ~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~ 261 (373)
T 1hz4_A 182 QCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIAR 261 (373)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHH
Confidence 8888899999999999887653212211 1111 223346688999999999988765321111 1235677888
Q ss_pred HHhhcCCHHHHHHHHHhC-------CCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHhccCC
Q 007517 373 LLGRAGQVEDAMKLIEAM-------PFEPDA-IIWGSLLGACRTHMKLDLAEVAAKKLLQLEP 427 (600)
Q Consensus 373 ~~~~~g~~~~A~~~~~~m-------~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 427 (600)
.+...|++++|.+.+++. +..++. ..+..+..++...|+.++|...+++++++.+
T Consensus 262 ~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~ 324 (373)
T 1hz4_A 262 AQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN 324 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhc
Confidence 899999999999988876 211122 2566667778889999999999999887543
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.09 E-value=2.2e-09 Score=103.58 Aligned_cols=187 Identities=10% Similarity=-0.017 Sum_probs=124.5
Q ss_pred HHHHHcCCHHHHHhhhhhcCC-------C--CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC---CCC--HHHHHHHH
Q 007517 270 TMYIKCGELVKGKLIFDNFAS-------K--DIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGV---MPD--DVTLVGVL 335 (600)
Q Consensus 270 ~~y~~~g~~~~A~~~~~~~~~-------~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~p~--~~t~~~ll 335 (600)
..|...|++++|...|++... + ...+|+.+...|...|++++|+..|++..+... .+. ..++..+.
T Consensus 45 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg 124 (292)
T 1qqe_A 45 TIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELG 124 (292)
T ss_dssp HHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 345566666666666654432 1 135677778888888888888888877654210 111 24677777
Q ss_pred HHHhcc-CCHHHHHHHHHHhHhcCCCCCC----hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC---H-----HHHHH
Q 007517 336 SACSYT-GKVKEGREIFESMKSKYLVEPK----TEHYACMVDLLGRAGQVEDAMKLIEAM-PFEPD---A-----IIWGS 401 (600)
Q Consensus 336 ~a~~~~-g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~---~-----~~~~~ 401 (600)
.++... |++++|...|++..+...-..+ ..++..+...|.+.|++++|.+.|++. ...|+ . ..|..
T Consensus 125 ~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 204 (292)
T 1qqe_A 125 EILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLK 204 (292)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHH
T ss_pred HHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHH
Confidence 888885 9999999999887653210111 356888999999999999999999887 22222 1 15677
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhccCCCCCch-----HHHHHHHHH--hcCCchHHHHHHHHH
Q 007517 402 LLGACRTHMKLDLAEVAAKKLLQLEPKNAGP-----YILLSNIYA--SQGRFHDVAELRKNM 456 (600)
Q Consensus 402 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~-----~~~l~~~~~--~~g~~~~a~~~~~~m 456 (600)
+..++...|+++.|...+++.++++|+.+.. +..++.+|. ..+++++|.+.++.+
T Consensus 205 lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~ 266 (292)
T 1qqe_A 205 KGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNF 266 (292)
T ss_dssp HHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccC
Confidence 8888999999999999999999999986543 344566664 456777777776543
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.07 E-value=4.8e-10 Score=107.11 Aligned_cols=197 Identities=14% Similarity=0.150 Sum_probs=112.7
Q ss_pred hhhHHHHHHHHHHcCCHHHHHhhhhhcCC-----------CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC------CC
Q 007517 262 VYVASVLITMYIKCGELVKGKLIFDNFAS-----------KDIVMWNSIISGYAQYGLGEKSLKVFHEMFSS------GV 324 (600)
Q Consensus 262 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~ 324 (600)
..++..+...|...|++++|...|++... ....+|..+...|...|++++|++.|++.... .-
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 122 (283)
T 3edt_B 43 ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKF 122 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCC
Confidence 34445555555555665555555554321 12345666677777777777777777776543 11
Q ss_pred CCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHhcC----C--CCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-C-----
Q 007517 325 MPD-DVTLVGVLSACSYTGKVKEGREIFESMKSKY----L--VEPKTEHYACMVDLLGRAGQVEDAMKLIEAM-P----- 391 (600)
Q Consensus 325 ~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~----~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~----- 391 (600)
.|+ ..++..+...+...|++++|..+++++.+.. + .+.....+..+...|.+.|++++|.+.+++. .
T Consensus 123 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~ 202 (283)
T 3edt_B 123 HPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEK 202 (283)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 122 3456666677777778887777777765530 0 1122556777778888888888888877765 1
Q ss_pred ----CCCC-HHHHHHHHHHHHHcCC------HHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007517 392 ----FEPD-AIIWGSLLGACRTHMK------LDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMRK 458 (600)
Q Consensus 392 ----~~p~-~~~~~~ll~~~~~~g~------~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 458 (600)
..+. ...|..+.......+. +..+...++......|..+..+..++.+|...|++++|.+++++..+
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 203 EFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred cCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1222 2233333333333222 22333333333333455556788889999999999999998887764
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=1.5e-09 Score=117.16 Aligned_cols=165 Identities=10% Similarity=0.079 Sum_probs=136.4
Q ss_pred CCchhhHHHHHHHHHHcCCHHHHHhhhhhcCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHH
Q 007517 259 DVDVYVASVLITMYIKCGELVKGKLIFDNFAS---KDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPD-DVTLVGV 334 (600)
Q Consensus 259 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~l 334 (600)
+.+...++.|...|.+.|++++|.+.|++..+ .+..+|+.+...|.+.|++++|++.|++..+. .|+ ...+..+
T Consensus 6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~a~~nL 83 (723)
T 4gyw_A 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNM 83 (723)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 34466788888888888999999888887653 46788999999999999999999999998874 565 5578888
Q ss_pred HHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCH
Q 007517 335 LSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM-PFEP-DAIIWGSLLGACRTHMKL 412 (600)
Q Consensus 335 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~ 412 (600)
..++...|++++|.+.|++..+.. +-+...|..+..+|.+.|++++|.+.|++. .+.| +...|..|...+...|++
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~--P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~ 161 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQIN--PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDW 161 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccH
Confidence 889999999999999999888742 335788999999999999999999999887 4455 477889999999999999
Q ss_pred HHHHHHHHHHhccCC
Q 007517 413 DLAEVAAKKLLQLEP 427 (600)
Q Consensus 413 ~~a~~~~~~~~~~~p 427 (600)
++|.+.+++++++.|
T Consensus 162 ~~A~~~~~kal~l~~ 176 (723)
T 4gyw_A 162 TDYDERMKKLVSIVA 176 (723)
T ss_dssp TTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCh
Confidence 999999998887543
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.03 E-value=5.6e-09 Score=100.72 Aligned_cols=166 Identities=9% Similarity=0.007 Sum_probs=101.8
Q ss_pred hHHHHHHHHHHcCCHHHHHhhhhhcCC-----CC----HHHHHHHHHHHHhc-CChHHHHHHHHHHHHCCCC-CC----H
Q 007517 264 VASVLITMYIKCGELVKGKLIFDNFAS-----KD----IVMWNSIISGYAQY-GLGEKSLKVFHEMFSSGVM-PD----D 328 (600)
Q Consensus 264 ~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~-p~----~ 328 (600)
+++.+..+|.+.|++++|...|++... .+ ..+|+.+...|... |++++|+..|++..+.... .+ .
T Consensus 79 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~ 158 (292)
T 1qqe_A 79 TYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSN 158 (292)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHH
Confidence 444455555555555555555544322 01 34677777778775 8888888888877652100 01 2
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCCh-----HHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHH-----
Q 007517 329 VTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKT-----EHYACMVDLLGRAGQVEDAMKLIEAM-PFEPDAI----- 397 (600)
Q Consensus 329 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-----~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~----- 397 (600)
.++..+...+...|++++|...|+...+...-.+.. ..|..+..+|...|++++|...+++. .+.|+..
T Consensus 159 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~ 238 (292)
T 1qqe_A 159 KCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRES 238 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------H
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHH
Confidence 356677778888888888888888877642111111 15677778888888888888888877 4444322
Q ss_pred -HHHHHHHHHH--HcCCHHHHHHHHHHHhccCCCC
Q 007517 398 -IWGSLLGACR--THMKLDLAEVAAKKLLQLEPKN 429 (600)
Q Consensus 398 -~~~~ll~~~~--~~g~~~~a~~~~~~~~~~~p~~ 429 (600)
.+..++.++. ..+++++|+..++++..++|..
T Consensus 239 ~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~ 273 (292)
T 1qqe_A 239 NFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWK 273 (292)
T ss_dssp HHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHH
Confidence 2444555554 3466888888888877777755
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.01 E-value=2.3e-08 Score=94.57 Aligned_cols=204 Identities=10% Similarity=0.029 Sum_probs=119.1
Q ss_pred hhhHHHHHHHHHHcCCHHHHHhhhhhcCC--C-C---HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCC-HHHHHH
Q 007517 262 VYVASVLITMYIKCGELVKGKLIFDNFAS--K-D---IVMWNSIISGYAQYGLGEKSLKVFHEMFSSGV-MPD-DVTLVG 333 (600)
Q Consensus 262 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~-~~t~~~ 333 (600)
...+-.+...+.+.|++++|...|+.+.. | + ...|..+...|.+.|++++|+..|++..+... .|+ ...+..
T Consensus 15 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~ 94 (261)
T 3qky_A 15 PQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYE 94 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHH
Confidence 34444455555566666666666655543 1 2 34555555566666666666666666555311 111 123333
Q ss_pred HHHHHhc--------cCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 007517 334 VLSACSY--------TGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAMPFEPDAIIWGSLLGA 405 (600)
Q Consensus 334 ll~a~~~--------~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~ 405 (600)
+..++.. .|++++|...|+.+.+.+ +.+......+.......+.+ ...+..+...
T Consensus 95 lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~~~~~~~~~---------------~~~~~~la~~ 157 (261)
T 3qky_A 95 RAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY--PNHELVDDATQKIRELRAKL---------------ARKQYEAARL 157 (261)
T ss_dssp HHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTCTTHHHHHHHHHHHHHHH---------------HHHHHHHHHH
T ss_pred HHHHHHHhcccccccchhHHHHHHHHHHHHHHC--cCchhHHHHHHHHHHHHHHH---------------HHHHHHHHHH
Confidence 4444444 555566666655555432 11111221111111000000 1113567788
Q ss_pred HHHcCCHHHHHHHHHHHhccCCCCC---chHHHHHHHHHhc----------CCchHHHHHHHHHHhCCCccCCceeEEEe
Q 007517 406 CRTHMKLDLAEVAAKKLLQLEPKNA---GPYILLSNIYASQ----------GRFHDVAELRKNMRKRNVIKPPGCSWIEV 472 (600)
Q Consensus 406 ~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~----------g~~~~a~~~~~~m~~~g~~~~~~~s~~~~ 472 (600)
+...|+++.|...++++++..|+++ ..+..++.+|... |++++|...+++..+.. |.
T Consensus 158 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~----p~------ 227 (261)
T 3qky_A 158 YERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF----PD------ 227 (261)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC----TT------
T ss_pred HHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC----CC------
Confidence 9999999999999999999999854 4688899999877 89999999999987642 32
Q ss_pred CCEEEEEEcCCCCCCCChHHHHHHHHHHHHHHHH
Q 007517 473 EKKVHMFTGRDCVSHPEHPMIMRMLEKIGGLLRE 506 (600)
Q Consensus 473 ~~~~~~f~~~~~~~~~~~~~~~~~l~~l~~~~~~ 506 (600)
+|........+.++...+.+
T Consensus 228 --------------~~~~~~a~~~l~~~~~~~~~ 247 (261)
T 3qky_A 228 --------------SPLLRTAEELYTRARQRLTE 247 (261)
T ss_dssp --------------CTHHHHHHHHHHHHHHHHHH
T ss_pred --------------ChHHHHHHHHHHHHHHHHHH
Confidence 55666666667776666544
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.97 E-value=2.4e-07 Score=87.94 Aligned_cols=163 Identities=14% Similarity=0.040 Sum_probs=83.3
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCC-----ChH
Q 007517 292 DIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPD-DVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEP-----KTE 365 (600)
Q Consensus 292 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-----~~~ 365 (600)
+..++..+..++...|++++|++++.+.+..|-.++ ...+..++..+.+.|+.+.|.+.++.|.+. .| +..
T Consensus 99 ~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~---~~d~~~~~d~ 175 (310)
T 3mv2_B 99 SPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA---IEDTVSGDNE 175 (310)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---SCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CccccccchH
Confidence 334444555555566666666666665544332122 234444555556666666666666665542 34 133
Q ss_pred HHHHHHHH--HhhcC--CHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc----------CCCCC
Q 007517 366 HYACMVDL--LGRAG--QVEDAMKLIEAM-PFEPDAIIWGSLLGACRTHMKLDLAEVAAKKLLQL----------EPKNA 430 (600)
Q Consensus 366 ~~~~li~~--~~~~g--~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----------~p~~~ 430 (600)
+...|..+ ....| +.++|..+|+++ ...|+..+-..|+.++.+.|++++|+..++.+.+. +|+++
T Consensus 176 ~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~ 255 (310)
T 3mv2_B 176 MILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKP 255 (310)
T ss_dssp HHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHH
T ss_pred HHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCH
Confidence 33333333 22223 566666666665 22343222233333556666666666666655554 35565
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007517 431 GPYILLSNIYASQGRFHDVAELRKNMRKR 459 (600)
Q Consensus 431 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 459 (600)
.++..++......|+ +|.+++.++++.
T Consensus 256 ~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 256 TFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp HHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 555555555555554 566666666553
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.96 E-value=4.8e-08 Score=92.71 Aligned_cols=239 Identities=10% Similarity=0.008 Sum_probs=159.1
Q ss_pred HhcCCHHHHHHHHHhcccCCh-hhHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCchhHhhHHHHHhhhcchHHHHHHH
Q 007517 172 GQNGEVQKARVVFDQMREKDD-ATWSGMIKVYERKGYELEVIDLFTLMQKEGVRVNFPSLISVLSVCASLASLDHGRQVH 250 (600)
Q Consensus 172 ~~~g~~~~A~~~f~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 250 (600)
.-.|.+..++.-..++...+. ..---+.++|...|++.... .-.|....+..+. .+...+ +...+
T Consensus 24 fy~G~yq~~i~e~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~~---------~~~~~~~a~~~la-~~~~~~----a~~~l 89 (310)
T 3mv2_B 24 YYTGNFVQCLQEIEKFSKVTDNTLLFYKAKTLLALGQYQSQD---------PTSKLGKVLDLYV-QFLDTK----NIEEL 89 (310)
T ss_dssp HTTTCHHHHTHHHHTSSCCCCHHHHHHHHHHHHHTTCCCCCC---------SSSTTHHHHHHHH-HHHTTT----CCHHH
T ss_pred HHhhHHHHHHHHHHhcCccchHHHHHHHHHHHHHcCCCccCC---------CCCHHHHHHHHHH-HHhccc----HHHHH
Confidence 345667666665555543222 22233446777777765321 1122222222222 222222 55666
Q ss_pred HHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHhhhhhcCC-----CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 007517 251 AQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFAS-----KDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVM 325 (600)
Q Consensus 251 ~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 325 (600)
+..+..+ +++......+..+|...|++++|++++.+... .+...+-.++..|.+.|+.+.|.+.+++|.+. .
T Consensus 90 ~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~--~ 166 (310)
T 3mv2_B 90 ENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA--I 166 (310)
T ss_dssp HHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--S
T ss_pred HHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--C
Confidence 6666554 44555556788889999999999999988733 35677888899999999999999999999874 6
Q ss_pred C-----CHHHHHHHHHHH--hc--cCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CC---
Q 007517 326 P-----DDVTLVGVLSAC--SY--TGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM-PF--- 392 (600)
Q Consensus 326 p-----~~~t~~~ll~a~--~~--~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~--- 392 (600)
| +..+...+..++ .. .++.++|..+|+++..++ |+...-..+..++.+.|++++|.+.++.+ ..
T Consensus 167 ~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~---p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~ 243 (310)
T 3mv2_B 167 EDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTF---PTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYS 243 (310)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTS---CSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHH
T ss_pred ccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhC---CCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 7 356666666663 22 348999999999998753 55333334444899999999999999765 21
Q ss_pred -------CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCch
Q 007517 393 -------EP-DAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGP 432 (600)
Q Consensus 393 -------~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 432 (600)
.| |+.+...++......|+ .|.++++++.+..|++|..
T Consensus 244 ~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i 289 (310)
T 3mv2_B 244 VEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFI 289 (310)
T ss_dssp TTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHH
T ss_pred ccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHH
Confidence 24 45666677767667787 8899999999999998643
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.95 E-value=2.4e-08 Score=83.03 Aligned_cols=127 Identities=19% Similarity=0.254 Sum_probs=62.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHh
Q 007517 296 WNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLG 375 (600)
Q Consensus 296 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~ 375 (600)
|..+...|...|++++|+.+|+++.+.. +.+...+..+...+...|++++|..+++.+.+.. +.
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~------------- 67 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PR------------- 67 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TT-------------
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC--CC-------------
Confidence 4445555555556666666555555432 1223344444444444555555555555444321 12
Q ss_pred hcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHH
Q 007517 376 RAGQVEDAMKLIEAMPFEPDAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKN 455 (600)
Q Consensus 376 ~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 455 (600)
+...|..+...+...|++++|...++++.+..|.++..+..++.+|...|++++|.+.+++
T Consensus 68 -------------------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 128 (136)
T 2fo7_A 68 -------------------SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 128 (136)
T ss_dssp -------------------CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred -------------------chHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHH
Confidence 2334444444444555555555555555555554444455555555555555555555554
Q ss_pred HH
Q 007517 456 MR 457 (600)
Q Consensus 456 m~ 457 (600)
+.
T Consensus 129 ~~ 130 (136)
T 2fo7_A 129 AL 130 (136)
T ss_dssp HH
T ss_pred HH
Confidence 44
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=98.95 E-value=1.5e-08 Score=96.64 Aligned_cols=162 Identities=13% Similarity=0.070 Sum_probs=85.6
Q ss_pred hHHHHHHHHHHcCCHHHHHhhhhhcCC-----------CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC------CCCC
Q 007517 264 VASVLITMYIKCGELVKGKLIFDNFAS-----------KDIVMWNSIISGYAQYGLGEKSLKVFHEMFSS------GVMP 326 (600)
Q Consensus 264 ~~~~li~~y~~~g~~~~A~~~~~~~~~-----------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p 326 (600)
++..+...|...|++++|...|++... ....+|..+...|...|++++|+..|+++.+. +-.|
T Consensus 87 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 166 (283)
T 3edt_B 87 TLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDP 166 (283)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 344444444445555555444443321 12345666666667777777777777666543 1122
Q ss_pred C-HHHHHHHHHHHhccCCHHHHHHHHHHhHhcC------CCCC-ChHHHHHHHHHHhh------cCCHHHHHHHHHhCC-
Q 007517 327 D-DVTLVGVLSACSYTGKVKEGREIFESMKSKY------LVEP-KTEHYACMVDLLGR------AGQVEDAMKLIEAMP- 391 (600)
Q Consensus 327 ~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~------~~~p-~~~~~~~li~~~~~------~g~~~~A~~~~~~m~- 391 (600)
+ ..++..+..++...|++++|.++++++.+.. ...+ ....+..+...+.. ...+.++...++..+
T Consensus 167 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (283)
T 3edt_B 167 NVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV 246 (283)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC
Confidence 2 2356666667777777777777777665420 0111 22233333333332 223445555555553
Q ss_pred CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q 007517 392 FEP-DAIIWGSLLGACRTHMKLDLAEVAAKKLLQL 425 (600)
Q Consensus 392 ~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 425 (600)
..| ...++..+...+...|++++|...++++++.
T Consensus 247 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 247 DSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 223 2456888888899999999999999988765
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.94 E-value=2.1e-08 Score=83.41 Aligned_cols=96 Identities=21% Similarity=0.298 Sum_probs=83.7
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHh
Q 007517 365 EHYACMVDLLGRAGQVEDAMKLIEAM-PF-EPDAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYAS 442 (600)
Q Consensus 365 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 442 (600)
..|..++..|.+.|++++|.++++++ .. +.+...|..+...+...|++++|...++++.+..|.++..+..++.+|..
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 35677888889999999999999877 22 34677888899999999999999999999999999998899999999999
Q ss_pred cCCchHHHHHHHHHHhCC
Q 007517 443 QGRFHDVAELRKNMRKRN 460 (600)
Q Consensus 443 ~g~~~~a~~~~~~m~~~g 460 (600)
.|++++|.++++.+.+..
T Consensus 82 ~~~~~~A~~~~~~~~~~~ 99 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELD 99 (136)
T ss_dssp TTCHHHHHHHHHHHHHHC
T ss_pred hcCHHHHHHHHHHHHHhC
Confidence 999999999999987643
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.91 E-value=1.5e-09 Score=93.18 Aligned_cols=141 Identities=9% Similarity=-0.014 Sum_probs=102.9
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCC
Q 007517 301 SGYAQYGLGEKSLKVFHEMFSSGVMPDD-VTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQ 379 (600)
Q Consensus 301 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 379 (600)
..+...|++++|+..+++.... .|+. ..+..+...|...|++++|.+.|++..+.. +.+...|..+..+|.+.|+
T Consensus 5 ~~~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 5 SMRRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ--ERDPKAHRFLGLLYELEEN 80 (150)
T ss_dssp --CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCc
Confidence 3344556777777777776532 3332 345556677777888888888888777642 3457788888888888888
Q ss_pred HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHH-HHHHHhccCCCCCchHHHHHHHHHhcCC
Q 007517 380 VEDAMKLIEAM-PFEP-DAIIWGSLLGACRTHMKLDLAEV-AAKKLLQLEPKNAGPYILLSNIYASQGR 445 (600)
Q Consensus 380 ~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~-~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 445 (600)
+++|...|++. .+.| +...|..+...+...|+.++|.. .++++++++|+++..|.....++...|+
T Consensus 81 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 81 TDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 88888888876 4445 47778888888888888876655 4689999999998888888888887775
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.90 E-value=2.4e-08 Score=94.45 Aligned_cols=199 Identities=13% Similarity=0.051 Sum_probs=142.1
Q ss_pred CchhHhhHHHHHhhhcchHHHHHHHHHHHHcCCCCc---hhhHHHHHHHHHHcCCHHHHHhhhhhcCC--C----CHHHH
Q 007517 226 NFPSLISVLSVCASLASLDHGRQVHAQLVRCQFDVD---VYVASVLITMYIKCGELVKGKLIFDNFAS--K----DIVMW 296 (600)
Q Consensus 226 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~----~~~~~ 296 (600)
+...+......+...|++++|...+..+++.. +.+ ...+..+..+|.+.|++++|...|+.... | ...++
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 44566677778889999999999999999875 223 56778899999999999999999998754 2 24567
Q ss_pred HHHHHHHHh--------cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHH
Q 007517 297 NSIISGYAQ--------YGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYA 368 (600)
Q Consensus 297 ~~li~~~~~--------~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~ 368 (600)
..+...+.. .|++++|+..|++..+. .|+..... .+...+..+... ....+.
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~-------------~a~~~~~~~~~~-----~~~~~~ 152 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELVD-------------DATQKIRELRAK-----LARKQY 152 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTHH-------------HHHHHHHHHHHH-----HHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhHH-------------HHHHHHHHHHHH-----HHHHHH
Confidence 788888888 99999999999999875 45432111 111111111111 122356
Q ss_pred HHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHc----------CCHHHHHHHHHHHhccCCCCCch-
Q 007517 369 CMVDLLGRAGQVEDAMKLIEAM-PFEPD----AIIWGSLLGACRTH----------MKLDLAEVAAKKLLQLEPKNAGP- 432 (600)
Q Consensus 369 ~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~~----------g~~~~a~~~~~~~~~~~p~~~~~- 432 (600)
.+...|.+.|++++|...|+++ ...|+ ...+..+..++... |++++|...++++++..|+++..
T Consensus 153 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 232 (261)
T 3qky_A 153 EAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLR 232 (261)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHH
Confidence 6788899999999999998877 22232 44677777777755 88999999999999999998543
Q ss_pred --HHHHHHHHHhcCC
Q 007517 433 --YILLSNIYASQGR 445 (600)
Q Consensus 433 --~~~l~~~~~~~g~ 445 (600)
...+..++...|+
T Consensus 233 ~a~~~l~~~~~~~~~ 247 (261)
T 3qky_A 233 TAEELYTRARQRLTE 247 (261)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 3334444433333
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.87 E-value=1.1e-07 Score=87.71 Aligned_cols=179 Identities=9% Similarity=-0.006 Sum_probs=111.5
Q ss_pred hhHHHHHHHHHHcCCHHHHHhhhhhcCC--CC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH----HHH
Q 007517 263 YVASVLITMYIKCGELVKGKLIFDNFAS--KD----IVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDV----TLV 332 (600)
Q Consensus 263 ~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----t~~ 332 (600)
..+..+...+.+.|++++|...|+++.. |+ ...+..+..+|.+.|++++|+..|++..+. .|+.. .+.
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~P~~~~~~~a~~ 82 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYVMY 82 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCcHHHHHH
Confidence 3444556667777888888888877653 21 246666777777888888888888877764 33321 222
Q ss_pred HHHHHHhc------------------cCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCC
Q 007517 333 GVLSACSY------------------TGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAMPFEP 394 (600)
Q Consensus 333 ~ll~a~~~------------------~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p 394 (600)
.+..++.. .|+.++|...|+.+.+.+ +-+...+.++..+. .+....
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--P~~~~a~~a~~~l~----~~~~~~---------- 146 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY--PNSQYTTDATKRLV----FLKDRL---------- 146 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC--TTCTTHHHHHHHHH----HHHHHH----------
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC--cCChhHHHHHHHHH----HHHHHH----------
Confidence 23333322 344555555555555432 11111111111000 000000
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCC---chHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 007517 395 DAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNA---GPYILLSNIYASQGRFHDVAELRKNMRKRN 460 (600)
Q Consensus 395 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 460 (600)
......+...+...|+++.|...++++++..|+++ ..+..++.+|.+.|++++|.+.++.+...+
T Consensus 147 -~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 147 -AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp -HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred -HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 00113455678889999999999999999999875 468889999999999999999999988764
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=7.1e-08 Score=92.63 Aligned_cols=172 Identities=9% Similarity=0.010 Sum_probs=132.9
Q ss_pred HHhhhhhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHhcCC
Q 007517 281 GKLIFDNFASKDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPD-DVTLVGVLSACSYTGKVKEGREIFESMKSKYL 359 (600)
Q Consensus 281 A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~ 359 (600)
....+......+...+..+...+.+.|++++|+..|++..+. .|+ ...+..+..++...|++++|...++.+...
T Consensus 105 l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~-- 180 (287)
T 3qou_A 105 IRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQL--SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ-- 180 (287)
T ss_dssp HHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--
T ss_pred HHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--
Confidence 333444444445566777778888899999999999998874 454 456777888888999999999999888664
Q ss_pred CCCChHHHHHH-HHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC--CchHH
Q 007517 360 VEPKTEHYACM-VDLLGRAGQVEDAMKLIEAM-PFEP-DAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKN--AGPYI 434 (600)
Q Consensus 360 ~~p~~~~~~~l-i~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~--~~~~~ 434 (600)
.|+....... ...+.+.|+.++|.+.+++. ...| +...+..+...+...|++++|...++++++.+|++ +..+.
T Consensus 181 -~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~ 259 (287)
T 3qou_A 181 -DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRX 259 (287)
T ss_dssp -GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHH
T ss_pred -hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHH
Confidence 4554433333 33466777888888888776 3334 57889999999999999999999999999999987 77899
Q ss_pred HHHHHHHhcCCchHHHHHHHHHH
Q 007517 435 LLSNIYASQGRFHDVAELRKNMR 457 (600)
Q Consensus 435 ~l~~~~~~~g~~~~a~~~~~~m~ 457 (600)
.++.+|...|+.++|...+++..
T Consensus 260 ~l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 260 TFQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCcHHHHHHHHH
Confidence 99999999999999998877653
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.84 E-value=1.8e-07 Score=85.28 Aligned_cols=161 Identities=11% Similarity=-0.055 Sum_probs=126.7
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC----CHHHHHHHHHHhHhcCCCCCChHH
Q 007517 291 KDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTG----KVKEGREIFESMKSKYLVEPKTEH 366 (600)
Q Consensus 291 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g----~~~~a~~~~~~~~~~~~~~p~~~~ 366 (600)
.+..++..+...|...+++++|+++|++..+.| +...+..+-..+.. + +.++|.++|+...+. .++..
T Consensus 16 g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~----g~~~a 87 (212)
T 3rjv_A 16 GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEA----GSKSG 87 (212)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHT----TCHHH
T ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHC----CCHHH
Confidence 466777777777878888888888888887765 44555556666666 6 788898888888653 35777
Q ss_pred HHHHHHHHhh----cCCHHHHHHHHHhC-CCCCC---HHHHHHHHHHHHH----cCCHHHHHHHHHHHhccCCCCCchHH
Q 007517 367 YACMVDLLGR----AGQVEDAMKLIEAM-PFEPD---AIIWGSLLGACRT----HMKLDLAEVAAKKLLQLEPKNAGPYI 434 (600)
Q Consensus 367 ~~~li~~~~~----~g~~~~A~~~~~~m-~~~p~---~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~ 434 (600)
+..|..+|.. .+++++|.+.|++. ...|+ +..+..|...|.. .++.++|...++++.+. |.++..+.
T Consensus 88 ~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~ 166 (212)
T 3rjv_A 88 EIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEY 166 (212)
T ss_dssp HHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHH
T ss_pred HHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHH
Confidence 7888888877 78999999999887 33343 7788888888888 78999999999999888 66667889
Q ss_pred HHHHHHHhc-C-----CchHHHHHHHHHHhCC
Q 007517 435 LLSNIYASQ-G-----RFHDVAELRKNMRKRN 460 (600)
Q Consensus 435 ~l~~~~~~~-g-----~~~~a~~~~~~m~~~g 460 (600)
.|+.+|... | ++++|.+++++..+.|
T Consensus 167 ~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 167 WAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 999999764 3 8999999999988776
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.84 E-value=4.5e-08 Score=106.08 Aligned_cols=168 Identities=9% Similarity=-0.048 Sum_probs=135.9
Q ss_pred HHcCCHHHHHhhhhhcC-----------CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhc
Q 007517 273 IKCGELVKGKLIFDNFA-----------SKDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMP-DDVTLVGVLSACSY 340 (600)
Q Consensus 273 ~~~g~~~~A~~~~~~~~-----------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~ 340 (600)
...|++++|.+.|++.. ..+...|..+...|.+.|++++|++.|++..+. .| +...+..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAER--VGWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HCCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhcc--CcchHHHHHHHHHHHHH
Confidence 66788999998888775 346678888888999999999999999998874 44 45577777788888
Q ss_pred cCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHH
Q 007517 341 TGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM-PFEP-DAIIWGSLLGACRTHMKLDLAEVA 418 (600)
Q Consensus 341 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~ 418 (600)
.|++++|.+.|++..+.. +.+...|..+..+|.+.|++++ .+.|++. ...| +...|..+..++...|++++|...
T Consensus 480 ~g~~~~A~~~~~~al~l~--P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF--PGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS--TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999999888742 3357888889999999999999 8888876 3344 577888899999999999999999
Q ss_pred HHHHhccCCCCCchHHHHHHHHHhcCC
Q 007517 419 AKKLLQLEPKNAGPYILLSNIYASQGR 445 (600)
Q Consensus 419 ~~~~~~~~p~~~~~~~~l~~~~~~~g~ 445 (600)
++++++++|+++..+..++.+|...|+
T Consensus 557 ~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHhhcccCcccHHHHHHHHHHHHccCC
Confidence 999999999988888889998877665
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.82 E-value=1.3e-06 Score=90.31 Aligned_cols=341 Identities=10% Similarity=-0.004 Sum_probs=161.5
Q ss_pred CCHHHHHHHHccCC--CCCcchHHHHHHHHHhcCC-hHHHHHHHhhCC------CCCcccHHHHHHHHH----hCCChHH
Q 007517 51 SRIDDARRLFDMMP--EKDVVAQTNMVLGYCQDGR-VDEGREIFDEMP------KKNVISWTTMISGYV----NNNRIDV 117 (600)
Q Consensus 51 g~~~~A~~~~~~m~--~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~------~~~~~~~~~li~~~~----~~g~~~~ 117 (600)
|+++.++.+|++.. .|++..|...+....+.+. .+....+|+... ..+...|...+..+. .+++.+.
T Consensus 28 ~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~ 107 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEK 107 (493)
T ss_dssp TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHH
T ss_pred CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHH
Confidence 67777777777766 3566677766666655542 234444555432 124455666555433 2345566
Q ss_pred HHHHHhhcCC-CCcchHHHHHHHHhc---CCChHHHHHHHhhCCCCCccchhHHHHHHHhcCCHHHHHHHHHhccc----
Q 007517 118 ARKLFEVMPE-KNEVSWTAMLMGYTQ---CGRIQDAWELFKAMPMKSVVASNSMILGLGQNGEVQKARVVFDQMRE---- 189 (600)
Q Consensus 118 A~~~~~~m~~-p~~~t~~~ll~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---- 189 (600)
+..+|++... |... +..+-..|.. ..+...+..+... + .+.+..|+.+++.+..
T Consensus 108 vR~iy~rAL~~P~~~-~~~lw~~Y~~fE~~~~~~~~~~~~~~---------------~--~~~y~~ar~~y~~~~~~~~~ 169 (493)
T 2uy1_A 108 IRNGYMRALQTPMGS-LSELWKDFENFELELNKITGKKIVGD---------------T--LPIFQSSFQRYQQIQPLIRG 169 (493)
T ss_dssp HHHHHHHHHTSCCTT-HHHHHHHHHHHHHHHCHHHHHHHHHH---------------H--HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhChhhh-HHHHHHHHHHHHHHhccccHHHHHHH---------------H--hHHHHHHHHHHHHHHHHHhh
Confidence 6667766665 3211 1122111111 0111111111111 0 1122333333333221
Q ss_pred CChhhHHHHHHHHHHcC--C-----hHHHHHHHHHHHHcCCccCchhHhhHHHHHhhhcchHHHHHHHHHHHHcCCCCch
Q 007517 190 KDDATWSGMIKVYERKG--Y-----ELEVIDLFTLMQKEGVRVNFPSLISVLSVCASLASLDHGRQVHAQLVRCQFDVDV 262 (600)
Q Consensus 190 ~~~~~~~~li~~~~~~g--~-----~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 262 (600)
.+...|...+.--..++ - .+.+..+|+++.... +.+...|...+.-+...|+.+.|..+++..++. |.+.
T Consensus 170 ~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~ 246 (493)
T 2uy1_A 170 WSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGM 246 (493)
T ss_dssp CSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSS
T ss_pred ccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcH
Confidence 13345555444322221 1 234566777776642 334455655666666777888888888887777 3333
Q ss_pred hhHHHHHHHHHHcCCHHHHH-hhhhhcC----------C--CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH
Q 007517 263 YVASVLITMYIKCGELVKGK-LIFDNFA----------S--KDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDV 329 (600)
Q Consensus 263 ~~~~~li~~y~~~g~~~~A~-~~~~~~~----------~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 329 (600)
..+. .|+...+.++.. .+.+... . .....|-..+....+.+..+.|..+|++. ... .++..
T Consensus 247 ~l~~----~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~ 320 (493)
T 2uy1_A 247 FLSL----YYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPH 320 (493)
T ss_dssp HHHH----HHHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHH
T ss_pred HHHH----HHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChH
Confidence 3222 222221111110 1111100 0 01234555555555556666777777666 211 11222
Q ss_pred HHHH--HHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 007517 330 TLVG--VLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAMPFEPDAIIWGSLLGACR 407 (600)
Q Consensus 330 t~~~--ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~ 407 (600)
.|.. .+... ..++.+.|+.+|+...+.+ +.++..+...++...+.|+.+.|..+|+++. .....|...+.--.
T Consensus 321 v~i~~A~lE~~-~~~d~~~ar~ife~al~~~--~~~~~~~~~yid~e~~~~~~~~aR~l~er~~--k~~~lw~~~~~fE~ 395 (493)
T 2uy1_A 321 VFIYCAFIEYY-ATGSRATPYNIFSSGLLKH--PDSTLLKEEFFLFLLRIGDEENARALFKRLE--KTSRMWDSMIEYEF 395 (493)
T ss_dssp HHHHHHHHHHH-HHCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC--CBHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HCCChHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHHHHHHHHHHHHH
Confidence 2221 11111 1225666777777666643 2234445556666666667777777776652 24555666665555
Q ss_pred HcCCHHHHHHHHHHHh
Q 007517 408 THMKLDLAEVAAKKLL 423 (600)
Q Consensus 408 ~~g~~~~a~~~~~~~~ 423 (600)
.+|+.+.+..++++..
T Consensus 396 ~~G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 396 MVGSMELFRELVDQKM 411 (493)
T ss_dssp HHSCHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHH
Confidence 5566555555555443
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.80 E-value=1.2e-08 Score=87.53 Aligned_cols=120 Identities=13% Similarity=0.034 Sum_probs=100.5
Q ss_pred HHHhccCCHHHHHHHHHHhHhcCCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCH
Q 007517 336 SACSYTGKVKEGREIFESMKSKYLVEPK-TEHYACMVDLLGRAGQVEDAMKLIEAM-PFEP-DAIIWGSLLGACRTHMKL 412 (600)
Q Consensus 336 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~ 412 (600)
..+...|++++|...++..... .|+ ...+-.+...|.+.|++++|.+.|++. .+.| +...|..+...+...|++
T Consensus 5 ~~~~~~~~~e~ai~~~~~a~~~---~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 5 SMRRSKADVERYIASVQGSTPS---PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp --CCCHHHHHHHHHHHHHHSCS---HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHcChHHHHHHHHHHhccc---CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCch
Confidence 3455678899999998877542 343 455677999999999999999999987 4455 588899999999999999
Q ss_pred HHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHH-HHHHHh
Q 007517 413 DLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAEL-RKNMRK 458 (600)
Q Consensus 413 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~-~~~m~~ 458 (600)
++|+..++++++++|+++.++..++.+|...|++++|.+. +++..+
T Consensus 82 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~ 128 (150)
T 4ga2_A 82 DKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAK 128 (150)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999987765 466655
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.78 E-value=2.6e-07 Score=100.15 Aligned_cols=189 Identities=12% Similarity=0.098 Sum_probs=147.1
Q ss_pred hhhcchHHHHHHHHHHH--------HcCCCCchhhHHHHHHHHHHcCCHHHHHhhhhhcCC---CCHHHHHHHHHHHHhc
Q 007517 238 ASLASLDHGRQVHAQLV--------RCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFAS---KDIVMWNSIISGYAQY 306 (600)
Q Consensus 238 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~ 306 (600)
...|++++|.+.++.+. +. .+.+...+..+...|.+.|++++|...|++..+ .+...|..+...|.+.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD-FSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C-CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc-cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence 67788888888888887 33 245667888889999999999999999988764 4788999999999999
Q ss_pred CChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHH
Q 007517 307 GLGEKSLKVFHEMFSSGVMPD-DVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMK 385 (600)
Q Consensus 307 g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 385 (600)
|++++|++.|++..+. .|+ ...+..+..++...|++++ .+.|++..+.. +.+...|..+..+|.+.|++++|.+
T Consensus 481 g~~~~A~~~~~~al~l--~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~--P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDT--FPGELAPKLALAATAELAGNTDE-HKFYQTVWSTN--DGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp TCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC--CchHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999999875 454 4577888888999999999 99999988742 3467889999999999999999999
Q ss_pred HHHhC-CCCCC-HHHHHHHHHHHHHcCC-----HHHHHHHHHHHhccCCCCCch
Q 007517 386 LIEAM-PFEPD-AIIWGSLLGACRTHMK-----LDLAEVAAKKLLQLEPKNAGP 432 (600)
Q Consensus 386 ~~~~m-~~~p~-~~~~~~ll~~~~~~g~-----~~~a~~~~~~~~~~~p~~~~~ 432 (600)
.|++. ...|+ ...|..+..++...++ .+...+..+.+.++.+.++..
T Consensus 556 ~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~~~~ 609 (681)
T 2pzi_A 556 TLDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPPTEPRV 609 (681)
T ss_dssp HHHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCTTSTTH
T ss_pred HHHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCCCcHHH
Confidence 99998 56776 5567777777766555 344444445555555555443
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.78 E-value=1.5e-07 Score=85.52 Aligned_cols=126 Identities=10% Similarity=0.056 Sum_probs=97.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhc
Q 007517 299 IISGYAQYGLGEKSLKVFHEMFSSGVMP-DDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRA 377 (600)
Q Consensus 299 li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 377 (600)
+...|.+.|++++|+..|++..+. .| +...+..+..++...|++++|...|++..+.. +.+...+..+...|...
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~ 135 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQK--APNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE--ADNLAANIFLGNYYYLT 135 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHH
Confidence 888899999999999999999875 45 45678888888999999999999999998752 34588888899888766
Q ss_pred CC--HHHHHHHHHhCCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC
Q 007517 378 GQ--VEDAMKLIEAMPFEPDA--IIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKN 429 (600)
Q Consensus 378 g~--~~~A~~~~~~m~~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 429 (600)
|. .+.+...++... .|+. ..|..+..++...|++++|...+++++++.|++
T Consensus 136 ~~~~~~~~~~~~~~~~-~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 136 AEQEKKKLETDYKKLS-SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp HHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred hHHHHHHHHHHHHHHh-CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH
Confidence 54 445666666653 3443 345556667778899999999999999999975
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.77 E-value=2.3e-07 Score=90.06 Aligned_cols=220 Identities=10% Similarity=-0.009 Sum_probs=155.7
Q ss_pred HcCChHHHHHHHHHHHHcCCccCchhHhhHHHHHhhhcchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHh
Q 007517 204 RKGYELEVIDLFTLMQKEGVRVNFPSLISVLSVCASLASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKL 283 (600)
Q Consensus 204 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~ 283 (600)
..|++++|.+++++..+.. +.. + +...++++.|...+..+ ...|...|++++|..
T Consensus 3 ~~~~~~eA~~~~~~a~k~~--~~~--~------~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~ 57 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYL--KTS--F------MKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKD 57 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHH--CCC--S------SSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHc--ccc--c------cCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHH
Confidence 3577889999998877642 111 1 11146777777766554 456788899999988
Q ss_pred hhhhcCC-----CC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHCC---CCCC--HHHHHHHHHHHhccCCHHHHHH
Q 007517 284 IFDNFAS-----KD----IVMWNSIISGYAQYGLGEKSLKVFHEMFSSG---VMPD--DVTLVGVLSACSYTGKVKEGRE 349 (600)
Q Consensus 284 ~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---~~p~--~~t~~~ll~a~~~~g~~~~a~~ 349 (600)
.|.+... .+ ..+|+.+...|...|++++|+..|++..+.- -.|. ..++..+...+.. |++++|..
T Consensus 58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~ 136 (307)
T 2ifu_A 58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVH 136 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHH
Confidence 8876543 12 3578888999999999999999999875421 1222 2467777888888 99999999
Q ss_pred HHHHhHhcCCCCC----ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CC---CCC----HHHHHHHHHHHHHcCCHHHHHH
Q 007517 350 IFESMKSKYLVEP----KTEHYACMVDLLGRAGQVEDAMKLIEAM-PF---EPD----AIIWGSLLGACRTHMKLDLAEV 417 (600)
Q Consensus 350 ~~~~~~~~~~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~---~p~----~~~~~~ll~~~~~~g~~~~a~~ 417 (600)
.|++..+...-.. ...++..+...|.+.|++++|.+.|++. .+ .++ ...+..+...+...|+++.|..
T Consensus 137 ~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~ 216 (307)
T 2ifu_A 137 LYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQK 216 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 9998765321011 1467888999999999999999999877 11 122 2356667777888899999999
Q ss_pred HHHHHhccCCCCCch-----HHHHHHHHHhcCCchHHHH
Q 007517 418 AAKKLLQLEPKNAGP-----YILLSNIYASQGRFHDVAE 451 (600)
Q Consensus 418 ~~~~~~~~~p~~~~~-----~~~l~~~~~~~g~~~~a~~ 451 (600)
.+++.+ +.|..... ...++.+| ..|+.+...+
T Consensus 217 ~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 217 CVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 999999 99976443 33455555 5677665555
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.74 E-value=1.7e-07 Score=99.54 Aligned_cols=159 Identities=14% Similarity=0.123 Sum_probs=121.7
Q ss_pred cCCHHHHHhhhhhcCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHH
Q 007517 275 CGELVKGKLIFDNFAS---KDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPD-DVTLVGVLSACSYTGKVKEGREI 350 (600)
Q Consensus 275 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~ 350 (600)
.|++++|.+.|++..+ .+...|..+...|.+.|++++|++.|++..+. .|+ ...+..+..++...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL--HPGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--STTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 3677888888877654 35778888999999999999999999998875 444 56788888889999999999999
Q ss_pred HHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHc---CCHHHHHHHHHHHhcc
Q 007517 351 FESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM-PFEP-DAIIWGSLLGACRTH---MKLDLAEVAAKKLLQL 425 (600)
Q Consensus 351 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~---g~~~~a~~~~~~~~~~ 425 (600)
+++..+.. +.+...+..+..+|.+.|++++|.+.+++. ...| +...+..+...+... |+.++|...++++++.
T Consensus 80 ~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAA--PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 99988752 445788999999999999999999999987 3334 577888999999999 9999999999999999
Q ss_pred CCCCCchHHHHH
Q 007517 426 EPKNAGPYILLS 437 (600)
Q Consensus 426 ~p~~~~~~~~l~ 437 (600)
+|.+...|..++
T Consensus 158 ~p~~~~~~~~l~ 169 (568)
T 2vsy_A 158 GVGAVEPFAFLS 169 (568)
T ss_dssp TCCCSCHHHHTT
T ss_pred CCcccChHHHhC
Confidence 999887777665
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.74 E-value=8.6e-08 Score=101.84 Aligned_cols=150 Identities=15% Similarity=0.013 Sum_probs=116.4
Q ss_pred cCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHH
Q 007517 306 YGLGEKSLKVFHEMFSSGVMPD-DVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAM 384 (600)
Q Consensus 306 ~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 384 (600)
.|++++|++.|++..+. .|+ ...+..+...+...|++++|.+.+++..+.. +.+...+..+...|.+.|++++|.
T Consensus 2 ~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~ 77 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRH--RPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH--PGHPEAVARLGRVRWTQQRHAEAA 77 (568)
T ss_dssp ---------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS--TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred CccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 47889999999998764 454 5678888889999999999999999998742 345889999999999999999999
Q ss_pred HHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhc---CCchHHHHHHHHHHhC
Q 007517 385 KLIEAM-PFEP-DAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQ---GRFHDVAELRKNMRKR 459 (600)
Q Consensus 385 ~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~---g~~~~a~~~~~~m~~~ 459 (600)
+.+++. ...| +...|..+...+...|++++|...++++++++|+++..+..++.+|... |++++|.+.+++..+.
T Consensus 78 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 78 VLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 999987 3334 5788999999999999999999999999999999999999999999999 9999999999887654
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.72 E-value=1.3e-07 Score=83.32 Aligned_cols=156 Identities=9% Similarity=0.020 Sum_probs=95.2
Q ss_pred HHHHHHHHHHcCCHHHHHhhhhhcCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 007517 265 ASVLITMYIKCGELVKGKLIFDNFAS---KDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYT 341 (600)
Q Consensus 265 ~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 341 (600)
...+...+.+.|++++|...|++... .+...|..+...|.+.|++++|+..|++.... .|+.. +..+...+
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~-~~~~~~~~--- 82 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNS-YKSLIAKL--- 82 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHH-HHHHHHHH---
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChH-HHHHHHHH---
Confidence 34455556666666666666666553 24556666666666666666666666655432 23221 11111000
Q ss_pred CCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHH
Q 007517 342 GKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM-PFEP-DAIIWGSLLGACRTHMKLDLAEVAA 419 (600)
Q Consensus 342 g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~ 419 (600)
. +.+.+...+|.+.+++. ...| +...+..+...+...|++++|...+
T Consensus 83 ------------------------------~-~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~ 131 (176)
T 2r5s_A 83 ------------------------------E-LHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELL 131 (176)
T ss_dssp ------------------------------H-HHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ------------------------------H-HHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHH
Confidence 0 00111112234444443 2234 4777888888888888999999999
Q ss_pred HHHhccCCCC--CchHHHHHHHHHhcCCchHHHHHHHHHH
Q 007517 420 KKLLQLEPKN--AGPYILLSNIYASQGRFHDVAELRKNMR 457 (600)
Q Consensus 420 ~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 457 (600)
+++++.+|+. +..+..++.+|...|+.++|...+++..
T Consensus 132 ~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al 171 (176)
T 2r5s_A 132 WNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQL 171 (176)
T ss_dssp HHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 9888888864 4578888889999999999888887654
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.70 E-value=4.6e-08 Score=83.50 Aligned_cols=97 Identities=12% Similarity=0.031 Sum_probs=85.9
Q ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHH
Q 007517 363 KTEHYACMVDLLGRAGQVEDAMKLIEAM-PFEP-DAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIY 440 (600)
Q Consensus 363 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 440 (600)
+...+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|...++++++++|+++..+..++.+|
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~ 99 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 4667778888999999999999999887 3334 6888999999999999999999999999999999999999999999
Q ss_pred HhcCCchHHHHHHHHHHhC
Q 007517 441 ASQGRFHDVAELRKNMRKR 459 (600)
Q Consensus 441 ~~~g~~~~a~~~~~~m~~~ 459 (600)
...|++++|.+.+++..+.
T Consensus 100 ~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 100 LQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 9999999999999988764
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.70 E-value=1.5e-07 Score=77.77 Aligned_cols=95 Identities=13% Similarity=0.143 Sum_probs=61.9
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHH
Q 007517 364 TEHYACMVDLLGRAGQVEDAMKLIEAM-PFEP-DAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYA 441 (600)
Q Consensus 364 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 441 (600)
...+......|.+.|++++|.+.|++. ...| +...|..+..++...|++++|+..++++++++|+++..|..++.+|.
T Consensus 13 a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 344555666666666666666666655 2223 45666666666666777777777777777777766666667777777
Q ss_pred hcCCchHHHHHHHHHHh
Q 007517 442 SQGRFHDVAELRKNMRK 458 (600)
Q Consensus 442 ~~g~~~~a~~~~~~m~~ 458 (600)
..|++++|.+.+++..+
T Consensus 93 ~~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQ 109 (126)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHH
Confidence 77777777776666654
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.69 E-value=7.2e-08 Score=82.32 Aligned_cols=100 Identities=8% Similarity=-0.005 Sum_probs=88.4
Q ss_pred CCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHH
Q 007517 360 VEP-KTEHYACMVDLLGRAGQVEDAMKLIEAM-PFEP-DAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILL 436 (600)
Q Consensus 360 ~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 436 (600)
+.| +...+..+...|.+.|++++|.+.|++. ...| +...|..+..++...|++++|...++++++++|+++..+..+
T Consensus 31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~l 110 (151)
T 3gyz_A 31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHT 110 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHH
Confidence 344 3667788888999999999999999988 3345 688899999999999999999999999999999999999999
Q ss_pred HHHHHhcCCchHHHHHHHHHHhC
Q 007517 437 SNIYASQGRFHDVAELRKNMRKR 459 (600)
Q Consensus 437 ~~~~~~~g~~~~a~~~~~~m~~~ 459 (600)
+.+|...|++++|.+.+++..+.
T Consensus 111 g~~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 111 GQCQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999999999999999998764
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.67 E-value=1.6e-06 Score=83.43 Aligned_cols=162 Identities=7% Similarity=-0.030 Sum_probs=121.5
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCC-CCCCHH----HHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCC----hHHH
Q 007517 297 NSIISGYAQYGLGEKSLKVFHEMFSSG-VMPDDV----TLVGVLSACSYTGKVKEGREIFESMKSKYLVEPK----TEHY 367 (600)
Q Consensus 297 ~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~----t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~ 367 (600)
...+..+...|++++|..++++..+.. ..|+.. .+..+...+...|++++|...|+.+.+...-.++ ...+
T Consensus 79 ~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~ 158 (293)
T 3u3w_A 79 KDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIE 158 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHH
Confidence 334677888999999999999987642 223321 2334566677778999999999988763211223 3468
Q ss_pred HHHHHHHhhcCCHHHHHHHHHhC-----CC---CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC------Cch
Q 007517 368 ACMVDLLGRAGQVEDAMKLIEAM-----PF---EPD-AIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKN------AGP 432 (600)
Q Consensus 368 ~~li~~~~~~g~~~~A~~~~~~m-----~~---~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~ 432 (600)
+.+...|...|++++|.+.++++ .. .+. ..++..+...|...|++++|...+++++++.+.. +..
T Consensus 159 ~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~ 238 (293)
T 3u3w_A 159 NAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQL 238 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHH
Confidence 99999999999999999988876 11 122 3468889999999999999999999999864332 467
Q ss_pred HHHHHHHHHhcCC-chHHHHHHHHHHh
Q 007517 433 YILLSNIYASQGR-FHDVAELRKNMRK 458 (600)
Q Consensus 433 ~~~l~~~~~~~g~-~~~a~~~~~~m~~ 458 (600)
|..++.+|...|+ +++|.+.+++..+
T Consensus 239 ~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 239 YYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 8899999999995 5999999887754
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.67 E-value=2.3e-07 Score=81.79 Aligned_cols=157 Identities=13% Similarity=0.063 Sum_probs=96.2
Q ss_pred hHhhHHHHHhhhcchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHhhhhhcCCC--CHHHHHHHHHH-HHh
Q 007517 229 SLISVLSVCASLASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFASK--DIVMWNSIISG-YAQ 305 (600)
Q Consensus 229 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~--~~~~~~~li~~-~~~ 305 (600)
.+......+...|++++|...++.+.+.. +.+...+..+...|.+.|++++|...|++.... +...+..+... +.+
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~ 86 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIAKLELHQ 86 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHHHHHHHHHh
Confidence 45566677889999999999999887764 456788899999999999999999999998653 34333222111 112
Q ss_pred cCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHH
Q 007517 306 YGLGEKSLKVFHEMFSSGVMPD-DVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAM 384 (600)
Q Consensus 306 ~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 384 (600)
.+...+|+..|++..+. .|+ ...+..+..++...|++++|...|+.+.+...-..+...+..+...|...|+.++|.
T Consensus 87 ~~~~~~a~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 87 QAAESPELKRLEQELAA--NPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HHTSCHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred hcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 22223456666665543 333 344555555555666666666666655543110112335555555555555555555
Q ss_pred HHHH
Q 007517 385 KLIE 388 (600)
Q Consensus 385 ~~~~ 388 (600)
..|+
T Consensus 165 ~~y~ 168 (176)
T 2r5s_A 165 SKYR 168 (176)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5554
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.64 E-value=6.3e-07 Score=86.22 Aligned_cols=165 Identities=6% Similarity=-0.046 Sum_probs=123.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-----HHHHHHHHHHhccCCHHHHHHHHHHhHhcCC--CCCC--h
Q 007517 294 VMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDD-----VTLVGVLSACSYTGKVKEGREIFESMKSKYL--VEPK--T 364 (600)
Q Consensus 294 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-----~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~--~~p~--~ 364 (600)
..+...+..+...|++++|++.+.+..+.....+. ..+..+...+...|++++|...++...+... ..+. .
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 45556677888999999999999988775322111 1233445566788899999999988765321 1122 4
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHhC----CCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC------C
Q 007517 365 EHYACMVDLLGRAGQVEDAMKLIEAM----PFEPD-----AIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPK------N 429 (600)
Q Consensus 365 ~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~------~ 429 (600)
..|+.+...|...|++++|.+.+++. ...|+ ..++..+...|...|++++|...+++++++.++ .
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 58889999999999999999998876 11222 257888999999999999999999999876432 1
Q ss_pred CchHHHHHHHHHhcCCchHH-HHHHHHHHh
Q 007517 430 AGPYILLSNIYASQGRFHDV-AELRKNMRK 458 (600)
Q Consensus 430 ~~~~~~l~~~~~~~g~~~~a-~~~~~~m~~ 458 (600)
+.+|..++.+|...|++++| ...+++...
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 45688899999999999999 777776653
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.64 E-value=6e-07 Score=81.61 Aligned_cols=124 Identities=13% Similarity=0.006 Sum_probs=98.6
Q ss_pred HHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHc
Q 007517 332 VGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM-PFE-PDAIIWGSLLGACRTH 409 (600)
Q Consensus 332 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~ 409 (600)
..+...+...|++++|...|++. ++|+...+..+...|.+.|++++|.+.+++. ... .+...|..+...+...
T Consensus 10 ~~~g~~~~~~~~~~~A~~~~~~a-----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~ 84 (213)
T 1hh8_A 10 WNEGVLAADKKDWKGALDAFSAV-----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQT 84 (213)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTS-----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCHHHHHHHHHHH-----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHc
Confidence 33444566677777777777655 2456777888888888888888888888776 222 3577888888889999
Q ss_pred CCHHHHHHHHHHHhccCCCCC----------------chHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 007517 410 MKLDLAEVAAKKLLQLEPKNA----------------GPYILLSNIYASQGRFHDVAELRKNMRKRN 460 (600)
Q Consensus 410 g~~~~a~~~~~~~~~~~p~~~----------------~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 460 (600)
|++++|...++++++..|.++ ..+..++.+|...|++++|.+.+++..+..
T Consensus 85 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 85 EKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp TCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred ccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 999999999999999888776 788999999999999999999999987653
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.63 E-value=4.4e-06 Score=79.97 Aligned_cols=219 Identities=9% Similarity=0.066 Sum_probs=102.5
Q ss_pred cCChHHHHHHHHHHHHcCCccCchh-HhhHHHHHhhhc--chHHHHHHHHHHHHcCCCCchhhHHHHHHHH----HHc--
Q 007517 205 KGYELEVIDLFTLMQKEGVRVNFPS-LISVLSVCASLA--SLDHGRQVHAQLVRCQFDVDVYVASVLITMY----IKC-- 275 (600)
Q Consensus 205 ~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y----~~~-- 275 (600)
....++|++++.++... .|+..| ++.--.++...+ +++++...+..++... +-+..+++.--..+ .+.
T Consensus 46 ~e~s~~aL~~t~~~L~~--nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~ 122 (306)
T 3dra_A 46 EEYSERALHITELGINE--LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNN 122 (306)
T ss_dssp TCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTT
T ss_pred CCCCHHHHHHHHHHHHH--CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccc
Confidence 34446788888777764 455443 333334444455 6666666666666654 33334444333333 333
Q ss_pred -CCHHHHHhhhhhcCC---CCHHHHHHHHHHHHhcCChH--HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC------
Q 007517 276 -GELVKGKLIFDNFAS---KDIVMWNSIISGYAQYGLGE--KSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGK------ 343 (600)
Q Consensus 276 -g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~--~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~------ 343 (600)
++++++..+++.+.+ +|..+|+.-.-.+.+.|.++ ++++.++++.+.. .-|...++.-.....+.|.
T Consensus 123 ~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~ 201 (306)
T 3dra_A 123 DFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNT 201 (306)
T ss_dssp CCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhh
Confidence 455555555555432 34555555555555555555 5555555555432 1223333333333333333
Q ss_pred HHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHH-HHHHHHhC-CC----CCCHHHHHHHHHHHHHcCCHHHHHH
Q 007517 344 VKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVED-AMKLIEAM-PF----EPDAIIWGSLLGACRTHMKLDLAEV 417 (600)
Q Consensus 344 ~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~-A~~~~~~m-~~----~p~~~~~~~ll~~~~~~g~~~~a~~ 417 (600)
++++.+.++.+.... +-|...|+.+..++.+.|+..+ +.++.++. .. ..+...+..+...+.+.|+.++|.+
T Consensus 202 ~~eEl~~~~~aI~~~--p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~ 279 (306)
T 3dra_A 202 IDEELNYVKDKIVKC--PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRT 279 (306)
T ss_dssp HHHHHHHHHHHHHHC--SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhC--CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHH
Confidence 444444444444321 2334444444444444444222 22333333 11 1233444444444444444444444
Q ss_pred HHHHHhc-cCCCC
Q 007517 418 AAKKLLQ-LEPKN 429 (600)
Q Consensus 418 ~~~~~~~-~~p~~ 429 (600)
+++.+.+ .+|..
T Consensus 280 ~~~~l~~~~Dpir 292 (306)
T 3dra_A 280 VYDLLKSKYNPIR 292 (306)
T ss_dssp HHHHHHHTTCGGG
T ss_pred HHHHHHhccChHH
Confidence 4444443 34443
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.62 E-value=1.2e-06 Score=83.87 Aligned_cols=157 Identities=6% Similarity=-0.057 Sum_probs=73.8
Q ss_pred hhHHHHHHHHHHcCCHHHHHhhhhhcCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHH-HHHHH
Q 007517 263 YVASVLITMYIKCGELVKGKLIFDNFAS---KDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVG-VLSAC 338 (600)
Q Consensus 263 ~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~-ll~a~ 338 (600)
.....+...+.+.|++++|...|++... .+...+..+...|.+.|++++|+..+++.... .|+...... ....+
T Consensus 118 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~~~~~l 195 (287)
T 3qou_A 118 ELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLVAQIEL 195 (287)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHHHHHHH
Confidence 3334444444455555555555544322 23444555555555555555555555544332 233321111 11123
Q ss_pred hccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC---HHHHHHHHHHHHHcCCHHH
Q 007517 339 SYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM-PFEPD---AIIWGSLLGACRTHMKLDL 414 (600)
Q Consensus 339 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~---~~~~~~ll~~~~~~g~~~~ 414 (600)
...+..++|...+++..... +.+...+..+...|...|++++|.+.++++ ...|+ ...+..|+..+...|+.+.
T Consensus 196 ~~~~~~~~a~~~l~~al~~~--P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~ 273 (287)
T 3qou_A 196 LXQAADTPEIQQLQQQVAEN--PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDA 273 (287)
T ss_dssp HHHHTSCHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCH
T ss_pred HhhcccCccHHHHHHHHhcC--CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCc
Confidence 33444444555555544431 233555555555555555555555555554 11222 4455555555555565555
Q ss_pred HHHHHHHHh
Q 007517 415 AEVAAKKLL 423 (600)
Q Consensus 415 a~~~~~~~~ 423 (600)
|...+++.+
T Consensus 274 a~~~~r~al 282 (287)
T 3qou_A 274 LASXYRRQL 282 (287)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555555543
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.62 E-value=1.2e-06 Score=79.48 Aligned_cols=143 Identities=8% Similarity=-0.087 Sum_probs=75.8
Q ss_pred HHHHHHHHcCCHHHHHhhhhhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHH
Q 007517 267 VLITMYIKCGELVKGKLIFDNFASKDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKE 346 (600)
Q Consensus 267 ~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 346 (600)
.+...|...|++++|...|++...++...|..+...|...|++++|++.|++..+.. +.+...+..+..++...|++++
T Consensus 11 ~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~ 89 (213)
T 1hh8_A 11 NEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYDL 89 (213)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcccHHH
Confidence 344445555555555555555554455555555555555555555555555554421 1222334444444444444444
Q ss_pred HHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q 007517 347 GREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAMPFEPD-AIIWGSLLGACRTHMKLDLAEVAAKKLLQL 425 (600)
Q Consensus 347 a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 425 (600)
|.+.|+...+...-.+... +...| +...|+ ...|..+..++...|++++|...+++++++
T Consensus 90 A~~~~~~al~~~~~~~~~~--------~~~~~-----------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 90 AIKDLKEALIQLRGNQLID--------YKILG-----------LQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp HHHHHHHHHHTTTTCSEEE--------CGGGT-----------BCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCCCccHHH--------HHHhc-----------cccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 4444444443210000000 00000 012232 367888888999999999999999999999
Q ss_pred CCCC
Q 007517 426 EPKN 429 (600)
Q Consensus 426 ~p~~ 429 (600)
.|++
T Consensus 151 ~p~~ 154 (213)
T 1hh8_A 151 KSEP 154 (213)
T ss_dssp CCSG
T ss_pred Cccc
Confidence 9976
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.62 E-value=6.9e-07 Score=82.22 Aligned_cols=183 Identities=13% Similarity=0.014 Sum_probs=130.4
Q ss_pred hhHhhHHHHHhhhcchHHHHHHHHHHHHcCCCC--chhhHHHHHHHHHHcCCHHHHHhhhhhcCC--CC-H---HHHHHH
Q 007517 228 PSLISVLSVCASLASLDHGRQVHAQLVRCQFDV--DVYVASVLITMYIKCGELVKGKLIFDNFAS--KD-I---VMWNSI 299 (600)
Q Consensus 228 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~-~---~~~~~l 299 (600)
..+......+...|++++|...++.+++..... ....+..+..+|.+.|++++|...|++... |+ . .++..+
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~ 84 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMR 84 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHH
Confidence 345556677889999999999999999864321 235677889999999999999999998754 22 1 245555
Q ss_pred HHHHHh------------------cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCC
Q 007517 300 ISGYAQ------------------YGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVE 361 (600)
Q Consensus 300 i~~~~~------------------~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~ 361 (600)
...+.. .|++++|+..|++..+. .|+....... ......+...
T Consensus 85 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a-------------~~~l~~~~~~---- 145 (225)
T 2yhc_A 85 GLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDA-------------TKRLVFLKDR---- 145 (225)
T ss_dssp HHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHH-------------HHHHHHHHHH----
T ss_pred HHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHH-------------HHHHHHHHHH----
Confidence 555554 57899999999999875 5665421111 1111111110
Q ss_pred CChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCC
Q 007517 362 PKTEHYACMVDLLGRAGQVEDAMKLIEAM-PFEPD----AIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNA 430 (600)
Q Consensus 362 p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 430 (600)
.......+...|.+.|++++|...|+++ ...|+ ...+..+..++.+.|+.++|...++++....|++.
T Consensus 146 -~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~ 218 (225)
T 2yhc_A 146 -LAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTL 218 (225)
T ss_dssp -HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCC
T ss_pred -HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCch
Confidence 0112345678899999999999999987 22343 24688889999999999999999999999888764
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.62 E-value=3.6e-07 Score=75.41 Aligned_cols=114 Identities=11% Similarity=0.022 Sum_probs=89.5
Q ss_pred CCCCH-HHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHH
Q 007517 324 VMPDD-VTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM-PFEP-DAIIWG 400 (600)
Q Consensus 324 ~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~ 400 (600)
+.|+. ..+......+.+.|++++|.+.|++..+.. +.+...|..+..+|.+.|++++|.+.+++. .+.| +...|.
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~ 85 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRD--PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYI 85 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHH
Confidence 34443 245566667778888888888888877642 446788888888889999999999888876 3334 577899
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHH
Q 007517 401 SLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNI 439 (600)
Q Consensus 401 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 439 (600)
.+..++...|++++|...++++++++|+++..+..|.++
T Consensus 86 ~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 86 RKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 999999999999999999999999999998777776654
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.60 E-value=3e-07 Score=77.75 Aligned_cols=97 Identities=13% Similarity=0.005 Sum_probs=84.6
Q ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHH
Q 007517 363 KTEHYACMVDLLGRAGQVEDAMKLIEAM-PFEP-DAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIY 440 (600)
Q Consensus 363 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 440 (600)
+...+..+...+.+.|++++|.+.|++. ...| +...|..+..++...|++++|...++++++++|+++..+..++.+|
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence 3556667788889999999999999887 3334 6788999999999999999999999999999999999999999999
Q ss_pred HhcCCchHHHHHHHHHHhC
Q 007517 441 ASQGRFHDVAELRKNMRKR 459 (600)
Q Consensus 441 ~~~g~~~~a~~~~~~m~~~ 459 (600)
...|++++|.+.++...+.
T Consensus 97 ~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 9999999999999988764
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.58 E-value=1.3e-06 Score=79.17 Aligned_cols=134 Identities=11% Similarity=0.004 Sum_probs=81.7
Q ss_pred HHHHHHHHHcCCHHHHHhhhhhcCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhcc
Q 007517 266 SVLITMYIKCGELVKGKLIFDNFAS---KDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPD-DVTLVGVLSACSYT 341 (600)
Q Consensus 266 ~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~ 341 (600)
+.+...|.+.|++++|...|++..+ .+...|..+...|...|++++|+..|++..+. .|+ ..++..+..++...
T Consensus 58 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~ 135 (208)
T 3urz_A 58 TELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQL--EADNLAANIFLGNYYYLT 135 (208)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHH
Confidence 4466777777777777777776543 36677777777788888888888888877764 444 44555555555444
Q ss_pred CC--HHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHH
Q 007517 342 GK--VKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM-PFEPDAIIWGSLLG 404 (600)
Q Consensus 342 g~--~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~ 404 (600)
|. .+.+...+..... ..|....+..+...+...|++++|...|++. ...|+......+..
T Consensus 136 ~~~~~~~~~~~~~~~~~---~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~l~~ 198 (208)
T 3urz_A 136 AEQEKKKLETDYKKLSS---PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEAQKTLDK 198 (208)
T ss_dssp HHHHHHHHHHHHC---C---CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhC---CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 33 3334444444321 1222223344555666678888888888776 56677665555443
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.57 E-value=8.2e-07 Score=72.41 Aligned_cols=114 Identities=20% Similarity=0.198 Sum_probs=80.4
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHH
Q 007517 329 VTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM-PF-EPDAIIWGSLLGAC 406 (600)
Q Consensus 329 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~ 406 (600)
..+..+...+...|++++|.++++.+.+.. +.+...+..+...|.+.|++++|...++++ .. +.+..+|..+...+
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 87 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 345555556666666666666666665532 334566777777777777777777777766 21 23567788888888
Q ss_pred HHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcC
Q 007517 407 RTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQG 444 (600)
Q Consensus 407 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 444 (600)
...|++++|...++++++..|+++..+..++.++...|
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 88888999999998888888888777777777776543
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.57 E-value=2.7e-06 Score=77.36 Aligned_cols=172 Identities=6% Similarity=-0.084 Sum_probs=123.9
Q ss_pred HHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHhhhhhcCC-CCHHHHHHHHHHHHhcC----ChHHHHHHHHHHH
Q 007517 246 GRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFAS-KDIVMWNSIISGYAQYG----LGEKSLKVFHEMF 320 (600)
Q Consensus 246 a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g----~~~~A~~~~~~m~ 320 (600)
|.+.+....+.| ++..+..|..+|...+++++|...|++..+ .+..++..|...|.. + ++++|+++|++..
T Consensus 5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 344455555543 555666677777777777777777776544 366777777777776 5 7888999998887
Q ss_pred HCCCCCCHHHHHHHHHHHhc----cCCHHHHHHHHHHhHhcCCCCCC---hHHHHHHHHHHhh----cCCHHHHHHHHHh
Q 007517 321 SSGVMPDDVTLVGVLSACSY----TGKVKEGREIFESMKSKYLVEPK---TEHYACMVDLLGR----AGQVEDAMKLIEA 389 (600)
Q Consensus 321 ~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~li~~~~~----~g~~~~A~~~~~~ 389 (600)
+.| +...+..+-..+.. .+++++|.++|++..+. .|. +..+..|..+|.. .+++++|.+.|++
T Consensus 81 ~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~---~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 154 (212)
T 3rjv_A 81 EAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARD---SESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKG 154 (212)
T ss_dssp HTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSS---TTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHH
T ss_pred HCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHc---CCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 765 45566666666666 78899999999888763 232 6788888888888 7889999999988
Q ss_pred C-CCCCCHHHHHHHHHHHHHc-C-----CHHHHHHHHHHHhccCC
Q 007517 390 M-PFEPDAIIWGSLLGACRTH-M-----KLDLAEVAAKKLLQLEP 427 (600)
Q Consensus 390 m-~~~p~~~~~~~ll~~~~~~-g-----~~~~a~~~~~~~~~~~p 427 (600)
. ...++...+..|...|... | +.++|...++++.+...
T Consensus 155 A~~~~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 155 SSSLSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHTSCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHcCCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 7 3234566777777777653 3 89999999998887754
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.56 E-value=2.6e-06 Score=88.07 Aligned_cols=334 Identities=13% Similarity=0.027 Sum_probs=172.6
Q ss_pred cC-ChHHHHHHHhhCCCCCcccHHHHHHHHHhCCChHHHHHHHhhcCC--CCcchHHHHHHHHhcCCC-hHHHHHHHhhC
Q 007517 81 DG-RVDEGREIFDEMPKKNVISWTTMISGYVNNNRIDVARKLFEVMPE--KNEVSWTAMLMGYTQCGR-IQDAWELFKAM 156 (600)
Q Consensus 81 ~g-~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--p~~~t~~~ll~~~~~~g~-~~~a~~~~~~~ 156 (600)
.| +++.|+.+|+.+.. .+-. |+++.+..+|++... |+...|...+....+.++ .+....+|+.+
T Consensus 7 ~~~~i~~aR~vyer~l~-----------~~P~-~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~a 74 (493)
T 2uy1_A 7 MGVELSSPSAIMEHARR-----------LYMS-KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFT 74 (493)
T ss_dssp -----CCHHHHHHHHHH-----------HHHT-TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHHHHHH
T ss_pred cCcchHHHHHHHHHHHH-----------HCCC-CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 45 36667776665432 2211 788888888888877 887777777776655553 34455666655
Q ss_pred C------CCCccchhHHHHHHH----hcCCHHHHHHHHHhcccCChhhHHHHHHHHH---HcCChHHHHHHHHHHHHcCC
Q 007517 157 P------MKSVVASNSMILGLG----QNGEVQKARVVFDQMREKDDATWSGMIKVYE---RKGYELEVIDLFTLMQKEGV 223 (600)
Q Consensus 157 ~------~~~~~~~~~li~~~~----~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~---~~g~~~~A~~~~~~m~~~g~ 223 (600)
+ ..+...|...+..+. ..|+++.+.++|++...--...+..+-..|. +......+..++.+.
T Consensus 75 l~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~----- 149 (493)
T 2uy1_A 75 LGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDT----- 149 (493)
T ss_dssp HHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHH-----
T ss_pred HHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHH-----
Confidence 4 223345555555443 2456777888887775421111111111111 111111122221111
Q ss_pred ccCchhHhhHHHHHhhhcchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHc--CC-----HHHHHhhhhhcCC---CCH
Q 007517 224 RVNFPSLISVLSVCASLASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKC--GE-----LVKGKLIFDNFAS---KDI 293 (600)
Q Consensus 224 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~--g~-----~~~A~~~~~~~~~---~~~ 293 (600)
.+.+..|+.++..+...--..+...|...++.-... |- .+.+..+|+++.. .+.
T Consensus 150 ----------------~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~~ 213 (493)
T 2uy1_A 150 ----------------LPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYYAE 213 (493)
T ss_dssp ----------------HHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCH
T ss_pred ----------------hHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCCCCH
Confidence 112233333333333210001223444433332111 00 2234556665443 356
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhcCC--------C---CC
Q 007517 294 VMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYL--------V---EP 362 (600)
Q Consensus 294 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~--------~---~p 362 (600)
..|-..+.-+.+.|+.++|..+|++.... |+...+... +......++ +++.+...+- . ..
T Consensus 214 ~lW~~ya~~~~~~~~~~~ar~i~erAi~~---P~~~~l~~~---y~~~~e~~~---~~~~l~~~~~~~~~~~~~~~~~~~ 284 (493)
T 2uy1_A 214 EVYFFYSEYLIGIGQKEKAKKVVERGIEM---SDGMFLSLY---YGLVMDEEA---VYGDLKRKYSMGEAESAEKVFSKE 284 (493)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHHH---HHHHTTCTH---HHHHHHHHTC----------CHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCcHHHHHH---HHhhcchhH---HHHHHHHHHHhhccchhhhhcccc
Confidence 67777777777888888888888888875 554332221 111111111 1222222110 0 01
Q ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHhCCCC-CCHHHHHHHHHHHH-HcCCHHHHHHHHHHHhccCCCCCchHHHHHHHH
Q 007517 363 KTEHYACMVDLLGRAGQVEDAMKLIEAMPFE-PDAIIWGSLLGACR-THMKLDLAEVAAKKLLQLEPKNAGPYILLSNIY 440 (600)
Q Consensus 363 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-p~~~~~~~ll~~~~-~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 440 (600)
....|...++.+.+.|.++.|.++|++.... ++...|......-. ..++.+.|..+++.+++..|+++..+...++..
T Consensus 285 ~~~lw~~y~~~~~r~~~~~~AR~i~~~A~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e 364 (493)
T 2uy1_A 285 LDLLRINHLNYVLKKRGLELFRKLFIELGNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFL 364 (493)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 1345667777777788888888888877211 23334432222222 233688888888888887787766666667777
Q ss_pred HhcCCchHHHHHHHHH
Q 007517 441 ASQGRFHDVAELRKNM 456 (600)
Q Consensus 441 ~~~g~~~~a~~~~~~m 456 (600)
...|+.+.|+.++++.
T Consensus 365 ~~~~~~~~aR~l~er~ 380 (493)
T 2uy1_A 365 LRIGDEENARALFKRL 380 (493)
T ss_dssp HHHTCHHHHHHHHHHS
T ss_pred HHcCCHHHHHHHHHHH
Confidence 7788888888888875
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.55 E-value=1e-06 Score=76.23 Aligned_cols=126 Identities=9% Similarity=-0.023 Sum_probs=91.3
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHH
Q 007517 331 LVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM-PFE-PDAIIWGSLLGACRT 408 (600)
Q Consensus 331 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~ 408 (600)
+..+...+...|++++|...|+...+.. +.+...+..+...|.+.|++++|.+.+++. ... .+...|..+...+..
T Consensus 16 ~~~~a~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~ 93 (166)
T 1a17_A 16 LKTQANDYFKAKDYENAIKFYSQAIELN--PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMA 93 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 4444455556666666666666665532 335667777777777888888888777766 222 356778888888899
Q ss_pred cCCHHHHHHHHHHHhccCCCCCchHHHH--HHHHHhcCCchHHHHHHHHHHh
Q 007517 409 HMKLDLAEVAAKKLLQLEPKNAGPYILL--SNIYASQGRFHDVAELRKNMRK 458 (600)
Q Consensus 409 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l--~~~~~~~g~~~~a~~~~~~m~~ 458 (600)
.|++++|...++++++..|.++..+..+ +..+...|++++|.+.++...+
T Consensus 94 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 94 LGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 9999999999999999999887776444 4447788999999998887653
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.54 E-value=3.4e-05 Score=73.81 Aligned_cols=212 Identities=10% Similarity=0.069 Sum_probs=150.6
Q ss_pred hHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcC--CHHHHHhhhhhcCC---CCHHHHHHHHHHH----Hhc---CChH
Q 007517 243 LDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCG--ELVKGKLIFDNFAS---KDIVMWNSIISGY----AQY---GLGE 310 (600)
Q Consensus 243 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g--~~~~A~~~~~~~~~---~~~~~~~~li~~~----~~~---g~~~ 310 (600)
.++|......++... +.+..+++.--..+...| +++++++.++.+.. ++..+|+.-...+ ... ++++
T Consensus 49 s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~ 127 (306)
T 3dra_A 49 SERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPY 127 (306)
T ss_dssp SHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTH
T ss_pred CHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHH
Confidence 356777777777765 445666777777777777 88888888887654 4556676654444 444 6788
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHH--HHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCC------HHH
Q 007517 311 KSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVK--EGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQ------VED 382 (600)
Q Consensus 311 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~--~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~------~~~ 382 (600)
+++++++++.+.. +-|...+..-...+.+.|.++ ++.++++.+.+.. +-+-..|+.-..++.+.|+ +++
T Consensus 128 ~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d--~~N~sAW~~R~~ll~~l~~~~~~~~~~e 204 (306)
T 3dra_A 128 REFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD--LKNNSAWSHRFFLLFSKKHLATDNTIDE 204 (306)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHSSGGGCCHHHHHH
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhccccchhhhHHH
Confidence 8888888888752 334556665555666667776 8888888887753 3466777777777777666 788
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHH-HHHHHHHHhccC---CCCCchHHHHHHHHHhcCCchHHHHHHHHH
Q 007517 383 AMKLIEAM-PFEP-DAIIWGSLLGACRTHMKLDL-AEVAAKKLLQLE---PKNAGPYILLSNIYASQGRFHDVAELRKNM 456 (600)
Q Consensus 383 A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~-a~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 456 (600)
+++.++++ ...| |...|+.+...+...|+... ...+.+++.+++ |.++.....++.+|.+.|+.++|.++++.+
T Consensus 205 El~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l 284 (306)
T 3dra_A 205 ELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLL 284 (306)
T ss_dssp HHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 88888766 2233 67788888888877776444 555777777665 777777888888888888888888888888
Q ss_pred Hh
Q 007517 457 RK 458 (600)
Q Consensus 457 ~~ 458 (600)
.+
T Consensus 285 ~~ 286 (306)
T 3dra_A 285 KS 286 (306)
T ss_dssp HH
T ss_pred Hh
Confidence 75
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.53 E-value=1.3e-06 Score=71.86 Aligned_cols=116 Identities=14% Similarity=0.018 Sum_probs=84.1
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 007517 330 TLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM-PFEP-DAIIWGSLLGACR 407 (600)
Q Consensus 330 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~ 407 (600)
.+..+...+...|++++|...++...+.. +.+...+..+...|...|++++|.+.+++. ...| +...|..+...+.
T Consensus 14 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (131)
T 2vyi_A 14 RLKTEGNEQMKVENFEAAVHFYGKAIELN--PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALS 91 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHH
Confidence 44455555666666666666666665532 335666777777777777777777777765 2223 4677888888888
Q ss_pred HcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCch
Q 007517 408 THMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFH 447 (600)
Q Consensus 408 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 447 (600)
..|++++|...++++++..|+++..+..++.++...|+++
T Consensus 92 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 131 (131)
T 2vyi_A 92 SLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREAP 131 (131)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTCC
T ss_pred HhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcCC
Confidence 8999999999999999999988888888888888877753
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.52 E-value=7.6e-07 Score=78.33 Aligned_cols=119 Identities=10% Similarity=0.119 Sum_probs=86.7
Q ss_pred hccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHH-HHHcCCH--H
Q 007517 339 SYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM-PFE-PDAIIWGSLLGA-CRTHMKL--D 413 (600)
Q Consensus 339 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~-~~~~g~~--~ 413 (600)
...|++++|...++...+.. +.+...|..+...|...|++++|.+.|++. ... .+...|..+... +...|++ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN--PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHHHC--CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchH
Confidence 34567777777777766542 345677777888888888888888888776 222 356677777777 6677887 8
Q ss_pred HHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007517 414 LAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMRKR 459 (600)
Q Consensus 414 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 459 (600)
+|...++++++.+|+++..+..++.+|...|++++|...+++..+.
T Consensus 99 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 99 QTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 8888888888888888888888888888888888888888887764
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.52 E-value=7.2e-07 Score=73.47 Aligned_cols=96 Identities=17% Similarity=0.116 Sum_probs=81.4
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHH
Q 007517 364 TEHYACMVDLLGRAGQVEDAMKLIEAM-PFEP-DAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYA 441 (600)
Q Consensus 364 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 441 (600)
...+..+...+.+.|++++|.+.|++. ...| +...|..+..++...|++++|+..++++++++|+++..+..++.+|.
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 456677788888889999999888876 3234 57888888999999999999999999999999999889999999999
Q ss_pred hcCCchHHHHHHHHHHhC
Q 007517 442 SQGRFHDVAELRKNMRKR 459 (600)
Q Consensus 442 ~~g~~~~a~~~~~~m~~~ 459 (600)
..|++++|.+.+++..+.
T Consensus 84 ~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 84 AVKEYASALETLDAARTK 101 (126)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHh
Confidence 999999999999888764
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.50 E-value=4.7e-07 Score=87.81 Aligned_cols=197 Identities=8% Similarity=-0.016 Sum_probs=148.0
Q ss_pred hhcchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHhhhhhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 007517 239 SLASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFASKDIVMWNSIISGYAQYGLGEKSLKVFHE 318 (600)
Q Consensus 239 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 318 (600)
..|++++|.++++...+.... . .+...+++++|...|... ...|...|++++|++.|.+
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~-~---------~~~~~~~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~~ 61 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKT-S---------FMKWKPDYDSAASEYAKA-----------AVAFKNAKQLEQAKDAYLQ 61 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCC-C---------SSSCSCCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHccc-c---------ccCCCCCHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHH
Confidence 457888999999888764311 1 011147888888877653 5678899999999999998
Q ss_pred HHHC----CCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHhcC---CCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHh
Q 007517 319 MFSS----GVMPD-DVTLVGVLSACSYTGKVKEGREIFESMKSKY---LVEP-KTEHYACMVDLLGRAGQVEDAMKLIEA 389 (600)
Q Consensus 319 m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~ 389 (600)
..+. |-.+. ..+|..+...+...|++++|...|++..+.+ |-.+ ...++..+..+|.+ |++++|.+.+++
T Consensus 62 al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~ 140 (307)
T 2ifu_A 62 EAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQ 140 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHH
Confidence 7653 21111 2467888888999999999999998876532 1111 14678889999999 999999999987
Q ss_pred C-CCC---CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCC------chHHHHHHHHHhcCCchHHHHHHHH
Q 007517 390 M-PFE---PD----AIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNA------GPYILLSNIYASQGRFHDVAELRKN 455 (600)
Q Consensus 390 m-~~~---p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~a~~~~~~ 455 (600)
. .+. .+ ..++..+...+...|++++|...+++++++.|.+. ..+..++.++...|++++|...+++
T Consensus 141 Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~ 220 (307)
T 2ifu_A 141 AAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRE 220 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 6 111 11 45788889999999999999999999999766543 2566778888899999999999998
Q ss_pred HH
Q 007517 456 MR 457 (600)
Q Consensus 456 m~ 457 (600)
..
T Consensus 221 al 222 (307)
T 2ifu_A 221 SY 222 (307)
T ss_dssp HT
T ss_pred Hh
Confidence 76
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.50 E-value=1.2e-06 Score=72.37 Aligned_cols=114 Identities=11% Similarity=0.010 Sum_probs=73.3
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHH
Q 007517 330 TLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM-PFE-PDAIIWGSLLGACR 407 (600)
Q Consensus 330 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~ 407 (600)
.+..+...+...|++++|...|+...+.. +.+...+..+...|...|++++|.+.+++. ... .+...|..+...+.
T Consensus 18 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 95 (133)
T 2lni_A 18 MVKNKGNECFQKGDYPQAMKHYTEAIKRN--PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALE 95 (133)
T ss_dssp HHHHHHHHHHHTTCSHHHHHHHHHHHTTC--TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 34444445555555555555555554321 224555666666666666666666666655 222 34667777777888
Q ss_pred HcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCC
Q 007517 408 THMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGR 445 (600)
Q Consensus 408 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 445 (600)
..|++++|...++++++..|.++..+..++.++...|+
T Consensus 96 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 96 AMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 88888888888888888888887778888877776553
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.50 E-value=1.9e-07 Score=89.25 Aligned_cols=189 Identities=8% Similarity=-0.064 Sum_probs=110.3
Q ss_pred hhhHHHHHHHHHHcCCHHHHHhhhhhcCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHH
Q 007517 262 VYVASVLITMYIKCGELVKGKLIFDNFAS---KDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPD-DVTLVGVLSA 337 (600)
Q Consensus 262 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a 337 (600)
...+..+...|.+.|++++|...|++... .+...|..+...|.+.|++++|+..+++..+. .|+ ...+..+..+
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFFLGQC 81 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 34455566666666777777666665432 35666777777777777777777777776653 333 4456666667
Q ss_pred HhccCCHHHHHHHHHHhHhcCCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 007517 338 CSYTGKVKEGREIFESMKSKYLVEPK-TEHYACMVDLLGRAGQVEDAMKLIEAMPFEPDAIIWGSLLGACRTHMKLDLAE 416 (600)
Q Consensus 338 ~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~ 416 (600)
+...|++++|...|+...+.. |+ ...+...+....+......... .......++......+. .+ ..|+.++|.
T Consensus 82 ~~~~g~~~~A~~~~~~al~l~---p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~l~-~l-~~~~~~~A~ 155 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYSLA---KEQRLNFGDDIPSALRIAKKKRWNS-IEERRIHQESELHSYLT-RL-IAAEREREL 155 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH---HHTTCCCCSHHHHHHHHHHHHHHHH-HHHTCCCCCCHHHHHHH-HH-HHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC---ccchhhHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHHH-HH-HHHHHHHHH
Confidence 777777777777776665421 21 0011111111111111111111 12222233444433332 22 267888999
Q ss_pred HHHHHHhccCCCCCchHHHHHHHHHhc-CCchHHHHHHHHHHh
Q 007517 417 VAAKKLLQLEPKNAGPYILLSNIYASQ-GRFHDVAELRKNMRK 458 (600)
Q Consensus 417 ~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~a~~~~~~m~~ 458 (600)
..++++++++|++......+...+... +.+++|.++|....+
T Consensus 156 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 156 EECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp TTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 999999999998766666666666665 778889999887765
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.48 E-value=2.2e-05 Score=75.34 Aligned_cols=158 Identities=12% Similarity=-0.034 Sum_probs=120.0
Q ss_pred HHHHHHHcCCHHHHHhhhhhcCCC-----C----HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-CC----HHHHHH
Q 007517 268 LITMYIKCGELVKGKLIFDNFASK-----D----IVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVM-PD----DVTLVG 333 (600)
Q Consensus 268 li~~y~~~g~~~~A~~~~~~~~~~-----~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~t~~~ 333 (600)
.+..+...|++++|...++..... + ...+..+...+...|++++|+..|++....... ++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 467788899999999999876541 2 123344666777788999999999999884322 22 226888
Q ss_pred HHHHHhccCCHHHHHHHHHHhHhcC----CCCCC-hHHHHHHHHHHhhcCCHHHHHHHHHhC-------CCCCC-HHHHH
Q 007517 334 VLSACSYTGKVKEGREIFESMKSKY----LVEPK-TEHYACMVDLLGRAGQVEDAMKLIEAM-------PFEPD-AIIWG 400 (600)
Q Consensus 334 ll~a~~~~g~~~~a~~~~~~~~~~~----~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~-~~~~~ 400 (600)
+..++...|++++|..+|+++.+.. +..+. ..+|..+...|.+.|++++|.+.+++. +..+. ..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 8889999999999999999887421 11122 447889999999999999999998876 22222 66888
Q ss_pred HHHHHHHHcC-CHHHHHHHHHHHhcc
Q 007517 401 SLLGACRTHM-KLDLAEVAAKKLLQL 425 (600)
Q Consensus 401 ~ll~~~~~~g-~~~~a~~~~~~~~~~ 425 (600)
.+..++...| ++++|...+++++++
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 9999999999 579999999988763
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.43 E-value=1.4e-06 Score=85.60 Aligned_cols=161 Identities=14% Similarity=0.071 Sum_probs=116.5
Q ss_pred CCHHHHHhhhhhcCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHH
Q 007517 276 GELVKGKLIFDNFAS---KDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFE 352 (600)
Q Consensus 276 g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 352 (600)
+++++|...|+.... .+...|..+...|.+.|++++|+..|++..+. .|+...+ ..+.+.++-
T Consensus 127 ~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~-----------~~~~~~~~~- 192 (336)
T 1p5q_A 127 KSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSW--LEYESSF-----------SNEEAQKAQ- 192 (336)
T ss_dssp EEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--TTTCCCC-----------CSHHHHHHH-
T ss_pred eecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--hhccccC-----------ChHHHHHHH-
Confidence 344445555544332 24567777778888888888888888887764 3332110 001111110
Q ss_pred HhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCC
Q 007517 353 SMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM-PFEP-DAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNA 430 (600)
Q Consensus 353 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 430 (600)
+.....|..+..+|.+.|++++|.+.+++. .+.| +...|..+..++...|++++|...++++++++|+++
T Consensus 193 --------~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~ 264 (336)
T 1p5q_A 193 --------ALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNK 264 (336)
T ss_dssp --------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCH
T ss_pred --------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCH
Confidence 012467888899999999999999999887 3334 678899999999999999999999999999999999
Q ss_pred chHHHHHHHHHhcCCchHH-HHHHHHHHh
Q 007517 431 GPYILLSNIYASQGRFHDV-AELRKNMRK 458 (600)
Q Consensus 431 ~~~~~l~~~~~~~g~~~~a-~~~~~~m~~ 458 (600)
..+..++.++...|++++| .+.++.|.+
T Consensus 265 ~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 265 AAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999 456666643
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.41 E-value=4.1e-06 Score=80.45 Aligned_cols=162 Identities=10% Similarity=-0.067 Sum_probs=118.2
Q ss_pred hHHHHHHHHHHcCCHHHHHhhhhhcCC---CC------HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC---CCC--HH
Q 007517 264 VASVLITMYIKCGELVKGKLIFDNFAS---KD------IVMWNSIISGYAQYGLGEKSLKVFHEMFSSGV---MPD--DV 329 (600)
Q Consensus 264 ~~~~li~~y~~~g~~~~A~~~~~~~~~---~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~p~--~~ 329 (600)
.+...+..|...|++++|.+.++...+ .. ...+..+...+...|++++|+..|++..+... .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 344567778889999999888865432 11 12344466667888899999999999875421 122 34
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCC-----hHHHHHHHHHHhhcCCHHHHHHHHHhC-CC------CC-CH
Q 007517 330 TLVGVLSACSYTGKVKEGREIFESMKSKYLVEPK-----TEHYACMVDLLGRAGQVEDAMKLIEAM-PF------EP-DA 396 (600)
Q Consensus 330 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m-~~------~p-~~ 396 (600)
+++.+...+...|++++|..+|++..+.....|+ ..++..+...|.+.|++++|.+.+++. .+ .. -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 7788888999999999999999988732111222 258889999999999999999999876 11 11 16
Q ss_pred HHHHHHHHHHHHcCCHHHH-HHHHHHHhcc
Q 007517 397 IIWGSLLGACRTHMKLDLA-EVAAKKLLQL 425 (600)
Q Consensus 397 ~~~~~ll~~~~~~g~~~~a-~~~~~~~~~~ 425 (600)
.+|..+...+...|++++| ...+++++.+
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 6788899999999999999 7778887753
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.40 E-value=1.5e-06 Score=69.32 Aligned_cols=98 Identities=12% Similarity=0.089 Sum_probs=80.3
Q ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC--CCchHHHHHH
Q 007517 363 KTEHYACMVDLLGRAGQVEDAMKLIEAM-PF-EPDAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPK--NAGPYILLSN 438 (600)
Q Consensus 363 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~ 438 (600)
+...+..+...+.+.|++++|...+++. .. ..+...|..+...+...|++++|...++++++..|+ ++..+..++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 3556667778888888888888888776 22 235777888888888999999999999999999998 8888889999
Q ss_pred HHHhc-CCchHHHHHHHHHHhCC
Q 007517 439 IYASQ-GRFHDVAELRKNMRKRN 460 (600)
Q Consensus 439 ~~~~~-g~~~~a~~~~~~m~~~g 460 (600)
+|... |++++|.+.++...+..
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHHhCCHHHHHHHHHHHhhcc
Confidence 99999 99999999999887653
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.37 E-value=3.4e-06 Score=71.82 Aligned_cols=105 Identities=10% Similarity=-0.036 Sum_probs=87.4
Q ss_pred CCCCHH-HHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHH
Q 007517 324 VMPDDV-TLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM-PFEP-DAIIWG 400 (600)
Q Consensus 324 ~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~ 400 (600)
+.|+.. .+..+...+...|++++|...|+.+.+.. +.+...|..+..+|.+.|++++|.+.|++. .+.| ++..|.
T Consensus 31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~--P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~ 108 (151)
T 3gyz_A 31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD--FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVF 108 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHH
Confidence 455543 56677778889999999999999988752 446888999999999999999999999987 3344 477889
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhccCCCCC
Q 007517 401 SLLGACRTHMKLDLAEVAAKKLLQLEPKNA 430 (600)
Q Consensus 401 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 430 (600)
.+..++...|++++|...+++++++.|+++
T Consensus 109 ~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 109 HTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 999999999999999999999999999763
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.37 E-value=3e-06 Score=70.65 Aligned_cols=98 Identities=9% Similarity=0.050 Sum_probs=84.7
Q ss_pred CChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHH
Q 007517 362 PKTEHYACMVDLLGRAGQVEDAMKLIEAM-PFEP-DAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNI 439 (600)
Q Consensus 362 p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 439 (600)
.+...+..+...+.+.|++++|...|++. ...| +...|..+...+...|+++.|...++++++++|+++..+..++.+
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 86 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 86 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 45778888888899999999999988876 2233 577888889999999999999999999999999998999999999
Q ss_pred HHhcCCchHHHHHHHHHHhC
Q 007517 440 YASQGRFHDVAELRKNMRKR 459 (600)
Q Consensus 440 ~~~~g~~~~a~~~~~~m~~~ 459 (600)
|...|++++|.+.+++..+.
T Consensus 87 ~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHH
Confidence 99999999999999988764
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.36 E-value=3.1e-06 Score=75.93 Aligned_cols=151 Identities=12% Similarity=0.015 Sum_probs=70.1
Q ss_pred HcCCHHHHHh---hhhhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHhccCCHH
Q 007517 274 KCGELVKGKL---IFDNFASKDIVMWNSIISGYAQYGLGEKSLKVFHEMFSS----GVMPD-DVTLVGVLSACSYTGKVK 345 (600)
Q Consensus 274 ~~g~~~~A~~---~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~ 345 (600)
..|++++|.+ .+..-+.....+++.+...|...|++++|+..|++.... +..|. ...+..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 3455666665 443322234455666666666666666666666665441 11111 123444445555566666
Q ss_pred HHHHHHHHhHhc---CCCCC--ChHHHHHHHHHHhhcCCHHHHHHHHHhC----CCCCC----HHHHHHHHHHHHHcCCH
Q 007517 346 EGREIFESMKSK---YLVEP--KTEHYACMVDLLGRAGQVEDAMKLIEAM----PFEPD----AIIWGSLLGACRTHMKL 412 (600)
Q Consensus 346 ~a~~~~~~~~~~---~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~----~~~~~~ll~~~~~~g~~ 412 (600)
+|...+++..+. .+-.| ....+..+...+...|++++|.+.+++. +..++ ..++..+...+...|++
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 163 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL 163 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence 666555554432 11001 1233445555555555555555555443 00011 11234444445555555
Q ss_pred HHHHHHHHHHhc
Q 007517 413 DLAEVAAKKLLQ 424 (600)
Q Consensus 413 ~~a~~~~~~~~~ 424 (600)
++|...++++++
T Consensus 164 ~~A~~~~~~al~ 175 (203)
T 3gw4_A 164 LEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 555555554443
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.35 E-value=5e-06 Score=77.78 Aligned_cols=135 Identities=10% Similarity=-0.073 Sum_probs=84.2
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCC--hHHHHHHHHHH
Q 007517 297 NSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPK--TEHYACMVDLL 374 (600)
Q Consensus 297 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~li~~~ 374 (600)
-.....+...|++++|.++|..+... .|+......+...+.+.+++++|+..|+...+. . .|. ...+..+..++
T Consensus 106 LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~-~-d~~~~~~a~~~LG~al 181 (282)
T 4f3v_A 106 MGFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW-P-DKFLAGAAGVAHGVAA 181 (282)
T ss_dssp HHHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC-S-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc-C-CcccHHHHHHHHHHHH
Confidence 33455566667777777777666543 344433333444566777777777777644331 0 111 23566677777
Q ss_pred hhcCCHHHHHHHHHhC---CCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHH
Q 007517 375 GRAGQVEDAMKLIEAM---PFEPD--AIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILL 436 (600)
Q Consensus 375 ~~~g~~~~A~~~~~~m---~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 436 (600)
.+.|++++|++.|++. +..|. ...+..+..++...|+.++|...|+++...+|+ +.....|
T Consensus 182 ~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL 247 (282)
T 4f3v_A 182 ANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAAL 247 (282)
T ss_dssp HHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHH
T ss_pred HHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHH
Confidence 8888888888887776 22143 335666777788888888888888888888886 4443333
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.35 E-value=7.3e-06 Score=65.83 Aligned_cols=93 Identities=14% Similarity=0.157 Sum_probs=47.3
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhc
Q 007517 366 HYACMVDLLGRAGQVEDAMKLIEAM-PFEP-DAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQ 443 (600)
Q Consensus 366 ~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 443 (600)
.+..+...+...|++++|.+.+++. ...| +...|..+...+...|++++|...++++++..|+++..+..++.+|...
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 85 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFL 85 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence 3444444555555555555555444 1112 3444555555555555555555555555555555555555555555555
Q ss_pred CCchHHHHHHHHHHh
Q 007517 444 GRFHDVAELRKNMRK 458 (600)
Q Consensus 444 g~~~~a~~~~~~m~~ 458 (600)
|++++|.+.++...+
T Consensus 86 ~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 86 NRFEEAKRTYEEGLK 100 (118)
T ss_dssp TCHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHH
Confidence 555555555555443
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.34 E-value=5.5e-06 Score=77.54 Aligned_cols=181 Identities=10% Similarity=0.005 Sum_probs=135.6
Q ss_pred HcCCHHHHHhhhhhcCC---CCHHHHHHH-------HHHHHhcCChHHHHHHHHHHHHCCCCCCHH--------------
Q 007517 274 KCGELVKGKLIFDNFAS---KDIVMWNSI-------ISGYAQYGLGEKSLKVFHEMFSSGVMPDDV-------------- 329 (600)
Q Consensus 274 ~~g~~~~A~~~~~~~~~---~~~~~~~~l-------i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-------------- 329 (600)
..++.+.|.+.|.++.. .....|+.+ ...+.+.++..+++..+..-.. +.|+..
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccccc
Confidence 46888888888887754 355778877 4556666666666666655443 344321
Q ss_pred --------HHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCH----H
Q 007517 330 --------TLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAMPFEPDA----I 397 (600)
Q Consensus 330 --------t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~----~ 397 (600)
....+..++...|++++|.+.|+.+... .|+......+...+.+.|++++|+..|+.....|+. .
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~---~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~ 172 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVA---GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGA 172 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT---TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHH
Confidence 1223456678899999999999988753 354436677778999999999999999977433433 3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhccC--CC-CCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007517 398 IWGSLLGACRTHMKLDLAEVAAKKLLQLE--PK-NAGPYILLSNIYASQGRFHDVAELRKNMRKR 459 (600)
Q Consensus 398 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 459 (600)
.+..+..++...|++++|+..+++..... |. .+.....++.++.+.|+.++|..+|+++...
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 68888899999999999999999998543 54 4446788999999999999999999999874
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.34 E-value=1.5e-06 Score=71.01 Aligned_cols=94 Identities=17% Similarity=0.058 Sum_probs=80.3
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhc
Q 007517 366 HYACMVDLLGRAGQVEDAMKLIEAM-PFEP-DAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQ 443 (600)
Q Consensus 366 ~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 443 (600)
.+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|+..++++++++|+++..+..++.+|...
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 3556777888899999999999887 3344 6778888889999999999999999999999999989999999999999
Q ss_pred CCchHHHHHHHHHHhC
Q 007517 444 GRFHDVAELRKNMRKR 459 (600)
Q Consensus 444 g~~~~a~~~~~~m~~~ 459 (600)
|++++|...+++..+.
T Consensus 99 g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 99 HNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHC-
T ss_pred CCHHHHHHHHHHHHHh
Confidence 9999999999988754
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.34 E-value=9.5e-06 Score=65.14 Aligned_cols=109 Identities=12% Similarity=0.031 Sum_probs=77.9
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 007517 329 VTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM-PFEP-DAIIWGSLLGAC 406 (600)
Q Consensus 329 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~ 406 (600)
..+..+...+...|++++|...++...... +.+...+..+...|.+.|++++|.+.+++. ...| +...|..+..++
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLD--PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 344455556666677777777777666532 335667777777788888888888877766 2233 567788888888
Q ss_pred HHcCCHHHHHHHHHHHhccCCCCCchHHHHHHH
Q 007517 407 RTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNI 439 (600)
Q Consensus 407 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 439 (600)
...|++++|...++++++..|+++..+..+..+
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 115 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 115 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 888999999999999998888887666665554
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.33 E-value=2.4e-06 Score=74.08 Aligned_cols=95 Identities=12% Similarity=0.090 Sum_probs=59.1
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHH
Q 007517 364 TEHYACMVDLLGRAGQVEDAMKLIEAM-PFEP-DAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYA 441 (600)
Q Consensus 364 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 441 (600)
...+..+...|.+.|++++|.+.|++. ...| +...|..+..++...|++++|+..++++++++|+++..|..++.+|.
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 90 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARF 90 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 445555666666666666666666655 2223 45556666666666666666666666666666666666666666666
Q ss_pred hcCCchHHHHHHHHHHh
Q 007517 442 SQGRFHDVAELRKNMRK 458 (600)
Q Consensus 442 ~~g~~~~a~~~~~~m~~ 458 (600)
..|++++|.+.+++..+
T Consensus 91 ~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 91 DMADYKGAKEAYEKGIE 107 (164)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHH
Confidence 66666666666666554
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.33 E-value=4.7e-06 Score=73.17 Aligned_cols=127 Identities=10% Similarity=0.069 Sum_probs=96.0
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHH-HhhcCCH--
Q 007517 304 AQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDL-LGRAGQV-- 380 (600)
Q Consensus 304 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~-~~~~g~~-- 380 (600)
...|++++|+..|++..+.. +.+...+..+...+...|++++|...|+...+.. +.+...+..+..+ |.+.|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR--GENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhcCCcch
Confidence 34677788888888877642 3345677777888888889999999888887642 3467778888888 7788998
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchH
Q 007517 381 EDAMKLIEAM-PFEP-DAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPY 433 (600)
Q Consensus 381 ~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 433 (600)
++|.+.+++. ...| +...|..+...+...|++++|...++++++..|+++...
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 152 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRT 152 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHH
Confidence 9999998877 3334 577888888999999999999999999999999885433
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.32 E-value=7.6e-06 Score=84.39 Aligned_cols=114 Identities=11% Similarity=-0.024 Sum_probs=57.2
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHH
Q 007517 303 YAQYGLGEKSLKVFHEMFSSGVMPD-DVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVE 381 (600)
Q Consensus 303 ~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 381 (600)
+.+.|++++|++.|++..+. .|+ ...+..+..++...|++++|.+.+++..+.. +.+...|..+..+|.+.|+++
T Consensus 16 ~~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 16 YFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD--KKYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp TTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC--TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHH
Confidence 44455566666666655553 232 4455555555666666666666666555431 233555566666666666666
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHH--HHHcCCHHHHHHHHH
Q 007517 382 DAMKLIEAM-PFEP-DAIIWGSLLGA--CRTHMKLDLAEVAAK 420 (600)
Q Consensus 382 ~A~~~~~~m-~~~p-~~~~~~~ll~~--~~~~g~~~~a~~~~~ 420 (600)
+|.+.+++. ...| +...+..+..+ +...|++++|+..++
T Consensus 92 eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 92 AALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 666666554 1122 12233333333 555566666666666
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.31 E-value=4.6e-06 Score=67.81 Aligned_cols=96 Identities=22% Similarity=0.302 Sum_probs=87.0
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHH
Q 007517 364 TEHYACMVDLLGRAGQVEDAMKLIEAM-PF-EPDAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYA 441 (600)
Q Consensus 364 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 441 (600)
...+..+...+.+.|++++|.+.++++ .. +.+..+|..+...+...|++++|...++++.+..|+++..+..++.+|.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 567888999999999999999999987 22 3467889999999999999999999999999999999899999999999
Q ss_pred hcCCchHHHHHHHHHHhC
Q 007517 442 SQGRFHDVAELRKNMRKR 459 (600)
Q Consensus 442 ~~g~~~~a~~~~~~m~~~ 459 (600)
..|++++|.+.++++.+.
T Consensus 89 ~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHh
Confidence 999999999999998764
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.30 E-value=4.2e-06 Score=69.08 Aligned_cols=99 Identities=14% Similarity=0.124 Sum_probs=89.5
Q ss_pred CCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHH
Q 007517 361 EPKTEHYACMVDLLGRAGQVEDAMKLIEAM-PFEP-DAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSN 438 (600)
Q Consensus 361 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 438 (600)
+.+...+..+...+.+.|++++|.+.+++. ...| +...|..+...+...|++++|...++++++..|+++..+..++.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~ 92 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAA 92 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 345778889999999999999999999987 4445 67889999999999999999999999999999999999999999
Q ss_pred HHHhcCCchHHHHHHHHHHhC
Q 007517 439 IYASQGRFHDVAELRKNMRKR 459 (600)
Q Consensus 439 ~~~~~g~~~~a~~~~~~m~~~ 459 (600)
+|...|++++|.+.+++..+.
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHh
Confidence 999999999999999988764
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.30 E-value=3.7e-06 Score=86.75 Aligned_cols=118 Identities=7% Similarity=-0.035 Sum_probs=99.3
Q ss_pred HHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHH
Q 007517 336 SACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM-PFEP-DAIIWGSLLGACRTHMKLD 413 (600)
Q Consensus 336 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~ 413 (600)
..+...|++++|.+.+++..+.. +.+...|..+..+|.+.|++++|.+.+++. ...| +...|..+..++...|+++
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIELN--PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Confidence 34567899999999999998752 345889999999999999999999999987 4445 5788999999999999999
Q ss_pred HHHHHHHHHhccCCCCCchHHHHHHH--HHhcCCchHHHHHHHH
Q 007517 414 LAEVAAKKLLQLEPKNAGPYILLSNI--YASQGRFHDVAELRKN 455 (600)
Q Consensus 414 ~a~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~a~~~~~~ 455 (600)
+|+..++++++++|+++..+..++.+ +...|++++|.+.+++
T Consensus 92 eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 92 AALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp HHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 99999999999999998888888888 8899999999998874
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.30 E-value=5.1e-06 Score=74.53 Aligned_cols=83 Identities=14% Similarity=0.001 Sum_probs=43.3
Q ss_pred HhcCCHHHHHH---HHHhcccCChhhHHHHHHHHHHcCChHHHHHHHHHHHHc----CCcc-CchhHhhHHHHHhhhcch
Q 007517 172 GQNGEVQKARV---VFDQMREKDDATWSGMIKVYERKGYELEVIDLFTLMQKE----GVRV-NFPSLISVLSVCASLASL 243 (600)
Q Consensus 172 ~~~g~~~~A~~---~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~t~~~ll~~~~~~~~~ 243 (600)
...|++++|.+ ++..-+.....+++.+...+...|++++|+..|++.... +..| ...++..+...+...|++
T Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred cccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 34567777777 444433334556777777777777777777777776542 1111 122333444444455555
Q ss_pred HHHHHHHHHHH
Q 007517 244 DHGRQVHAQLV 254 (600)
Q Consensus 244 ~~a~~~~~~~~ 254 (600)
++|...+....
T Consensus 83 ~~A~~~~~~al 93 (203)
T 3gw4_A 83 DAARRCFLEER 93 (203)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55555544443
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.29 E-value=1.7e-06 Score=73.64 Aligned_cols=102 Identities=10% Similarity=-0.028 Sum_probs=77.7
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 007517 330 TLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM-PFEP-DAIIWGSLLGACR 407 (600)
Q Consensus 330 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~ 407 (600)
.+..+...+...|++++|...|+...... +.+...|..+..+|.+.|++++|.+.|++. ...| +...|..+..++.
T Consensus 23 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~ 100 (148)
T 2vgx_A 23 QLYSLAFNQYQSGXYEDAHXVFQALCVLD--HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLL 100 (148)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcC--cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 45555666777788888888887776642 346777778888888888888888888876 3334 5677888888899
Q ss_pred HcCCHHHHHHHHHHHhccCCCCCchH
Q 007517 408 THMKLDLAEVAAKKLLQLEPKNAGPY 433 (600)
Q Consensus 408 ~~g~~~~a~~~~~~~~~~~p~~~~~~ 433 (600)
..|++++|...+++++++.|+++...
T Consensus 101 ~~g~~~~A~~~~~~al~~~p~~~~~~ 126 (148)
T 2vgx_A 101 QXGELAEAESGLFLAQELIANXPEFX 126 (148)
T ss_dssp HTTCHHHHHHHHHHHHHHHTTCGGGH
T ss_pred HcCCHHHHHHHHHHHHHHCcCCCcch
Confidence 99999999999999999988876553
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.29 E-value=6.1e-06 Score=69.60 Aligned_cols=96 Identities=14% Similarity=0.086 Sum_probs=59.4
Q ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHH
Q 007517 363 KTEHYACMVDLLGRAGQVEDAMKLIEAM-PFEPD----AIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLS 437 (600)
Q Consensus 363 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 437 (600)
+...+..+...+.+.|++++|.+.|++. ...|+ ...|..+...+...|++++|...++++++..|+++..+..++
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a 106 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRS 106 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHH
Confidence 3455555666666666666666666655 33454 455566666666666666666666666666666666666666
Q ss_pred HHHHhcCCchHHHHHHHHHHh
Q 007517 438 NIYASQGRFHDVAELRKNMRK 458 (600)
Q Consensus 438 ~~~~~~g~~~~a~~~~~~m~~ 458 (600)
.+|...|++++|.+.+++..+
T Consensus 107 ~~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 107 QALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 666666666666666666554
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.29 E-value=2.5e-06 Score=70.35 Aligned_cols=95 Identities=7% Similarity=0.029 Sum_probs=80.3
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCc-------hHH
Q 007517 364 TEHYACMVDLLGRAGQVEDAMKLIEAM-PFEP-DAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAG-------PYI 434 (600)
Q Consensus 364 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~-------~~~ 434 (600)
...+..+...|.+.|++++|++.|++. .+.| +...|..+..+|...|++++|+..++++++++|+++. +|.
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 345677888999999999999999887 3344 5778999999999999999999999999998887653 567
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHh
Q 007517 435 LLSNIYASQGRFHDVAELRKNMRK 458 (600)
Q Consensus 435 ~l~~~~~~~g~~~~a~~~~~~m~~ 458 (600)
.++.+|...|++++|.+.+++..+
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHh
Confidence 788889999999999999998765
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.28 E-value=1.5e-05 Score=68.74 Aligned_cols=129 Identities=9% Similarity=-0.062 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHH
Q 007517 293 IVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVD 372 (600)
Q Consensus 293 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 372 (600)
...|..+...+...|++++|+..|++..+.. +.+...+..+..++...|++++|.+.++...+.. +.+...+..+..
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~a~ 89 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD--KKYIKGYYRRAA 89 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cccHHHHHHHHH
Confidence 3456677777888888888888888877642 3345667777777888888888888888877642 345777888888
Q ss_pred HHhhcCCHHHHHHHHHhC-CCCC-CHHHHHH--HHHHHHHcCCHHHHHHHHHHHhc
Q 007517 373 LLGRAGQVEDAMKLIEAM-PFEP-DAIIWGS--LLGACRTHMKLDLAEVAAKKLLQ 424 (600)
Q Consensus 373 ~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~--ll~~~~~~g~~~~a~~~~~~~~~ 424 (600)
.|.+.|++++|.+.+++. ...| +...+.. +...+...|++++|...+++..+
T Consensus 90 ~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 90 SNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 888888888888888876 2223 3444433 33346677888888888877654
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.25 E-value=6.3e-06 Score=73.92 Aligned_cols=171 Identities=9% Similarity=-0.076 Sum_probs=108.2
Q ss_pred HHHHHHHcCCHHHHHhhhhhcCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCH
Q 007517 268 LITMYIKCGELVKGKLIFDNFASK---DIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKV 344 (600)
Q Consensus 268 li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 344 (600)
.+......|+++.|.+.|+..... ....|..+...+...|++++|+..|++..+. .|+...+...
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~---------- 77 (198)
T 2fbn_A 10 HSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDF--FIHTEEWDDQ---------- 77 (198)
T ss_dssp ------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TTTCTTCCCH----------
T ss_pred hhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--Hhcccccchh----------
Confidence 344455567777777777654332 4556777888888899999999999988874 2322111000
Q ss_pred HHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 007517 345 KEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM-PFEP-DAIIWGSLLGACRTHMKLDLAEVAAKKL 422 (600)
Q Consensus 345 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 422 (600)
....-.. ......|..+..+|.+.|++++|.+.+++. ...| +...|..+..++...|++++|...++++
T Consensus 78 -----~~~~~~~----~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~a 148 (198)
T 2fbn_A 78 -----ILLDKKK----NIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKA 148 (198)
T ss_dssp -----HHHHHHH----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred -----hHHHHHH----HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 0000000 011456777888888999999999888877 2233 6778888999999999999999999999
Q ss_pred hccCCCCCchHHHHHHHHHhcCCchHHH-HHHHHHHhC
Q 007517 423 LQLEPKNAGPYILLSNIYASQGRFHDVA-ELRKNMRKR 459 (600)
Q Consensus 423 ~~~~p~~~~~~~~l~~~~~~~g~~~~a~-~~~~~m~~~ 459 (600)
++++|+++..+..+..++...|+.+++. ..++.|...
T Consensus 149 l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~ 186 (198)
T 2fbn_A 149 ASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDK 186 (198)
T ss_dssp HHHSTTCHHHHHHHHHHHHHHHHHHC------------
T ss_pred HHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999889999999998888887777 455555443
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.25 E-value=8.2e-06 Score=66.90 Aligned_cols=97 Identities=10% Similarity=0.086 Sum_probs=87.5
Q ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHH
Q 007517 363 KTEHYACMVDLLGRAGQVEDAMKLIEAM-PFE-PDAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIY 440 (600)
Q Consensus 363 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 440 (600)
+...+..+...+...|++++|.+.+++. ... .+...|..+...+...|++++|...++++++..|+++..+..++.+|
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 4667888899999999999999999987 223 36788999999999999999999999999999999999999999999
Q ss_pred HhcCCchHHHHHHHHHHhC
Q 007517 441 ASQGRFHDVAELRKNMRKR 459 (600)
Q Consensus 441 ~~~g~~~~a~~~~~~m~~~ 459 (600)
...|++++|.+.+++..+.
T Consensus 91 ~~~~~~~~A~~~~~~~~~~ 109 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALEL 109 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHhc
Confidence 9999999999999988764
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.25 E-value=7.3e-05 Score=72.34 Aligned_cols=228 Identities=11% Similarity=0.064 Sum_probs=111.8
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCccCchh-HhhHHHHHhhhc-chHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHc-C
Q 007517 200 KVYERKGYELEVIDLFTLMQKEGVRVNFPS-LISVLSVCASLA-SLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKC-G 276 (600)
Q Consensus 200 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~-g 276 (600)
....+.+..++|++++.++... .|+..| ++.--.++...+ .++++..++..+++.. +-+..+++.-...+.+. +
T Consensus 62 ~~~~~~e~se~AL~lt~~~L~~--nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~ 138 (349)
T 3q7a_A 62 AIAAKEEKSERALELTEIIVRM--NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISP 138 (349)
T ss_dssp HHHHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCC
T ss_pred HHHHhCCCCHHHHHHHHHHHHh--CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcC
Confidence 3334455566777777777764 344333 233333333344 3556666665555543 33344444444444443 4
Q ss_pred -CHHHHHhhhhhcCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHH
Q 007517 277 -ELVKGKLIFDNFAS---KDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFE 352 (600)
Q Consensus 277 -~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 352 (600)
+.++++++++.+.+ +|..+|+.-.-.+.+.|.++. . ....++++.++++
T Consensus 139 ~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~--------------~-------------~~~~~~eELe~~~ 191 (349)
T 3q7a_A 139 QDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGR--------------I-------------SEAQWGSELDWCN 191 (349)
T ss_dssp SCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTC--------------C-------------CHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccc--------------c-------------chhhHHHHHHHHH
Confidence 44555555554443 233444443333333332220 0 0000124555555
Q ss_pred HhHhcCCCCCChHHHHHHHHHHhhcCC-------HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCH-----------
Q 007517 353 SMKSKYLVEPKTEHYACMVDLLGRAGQ-------VEDAMKLIEAM-PFEP-DAIIWGSLLGACRTHMKL----------- 412 (600)
Q Consensus 353 ~~~~~~~~~p~~~~~~~li~~~~~~g~-------~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~----------- 412 (600)
++.+.. +-|...|+....++.+.++ ++++++.++++ ...| |...|+.+-..+.+.|..
T Consensus 192 k~I~~d--p~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~ 269 (349)
T 3q7a_A 192 EMLRVD--GRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPY 269 (349)
T ss_dssp HHHHHC--TTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGG
T ss_pred HHHHhC--CCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCccccccccccc
Confidence 554431 2344555555555555544 45555555544 2223 455566555555554432
Q ss_pred ---------HHHHHHHHHHhcc------CCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007517 413 ---------DLAEVAAKKLLQL------EPKNAGPYILLSNIYASQGRFHDVAELRKNMRKR 459 (600)
Q Consensus 413 ---------~~a~~~~~~~~~~------~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 459 (600)
.........+... ++.++.....|+.+|...|+.++|.++++.+.++
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~ 331 (349)
T 3q7a_A 270 TASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSE 331 (349)
T ss_dssp TC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred ccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 1122222222222 1455566778999999999999999999998643
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.23 E-value=6.4e-06 Score=69.36 Aligned_cols=105 Identities=13% Similarity=-0.008 Sum_probs=76.6
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 007517 330 TLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM-PFEP-DAIIWGSLLGACR 407 (600)
Q Consensus 330 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~ 407 (600)
.+..+...+...|++++|...|+...... +.+...|..+..+|.+.|++++|.+.|++. ...| +...|..+..++.
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCMLD--HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 34445556667777777777777776642 345677777888888888888888888776 2233 4667778888888
Q ss_pred HcCCHHHHHHHHHHHhccCCCCCchHHHH
Q 007517 408 THMKLDLAEVAAKKLLQLEPKNAGPYILL 436 (600)
Q Consensus 408 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 436 (600)
..|++++|...+++++++.|+++......
T Consensus 98 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 126 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARALAAAQPAHEALA 126 (142)
T ss_dssp HTTCHHHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCCcchHHHH
Confidence 89999999999999999888876655443
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.22 E-value=7.5e-06 Score=70.71 Aligned_cols=94 Identities=11% Similarity=0.047 Sum_probs=71.0
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC-CC------------------CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q 007517 366 HYACMVDLLGRAGQVEDAMKLIEAM-PF------------------EP-DAIIWGSLLGACRTHMKLDLAEVAAKKLLQL 425 (600)
Q Consensus 366 ~~~~li~~~~~~g~~~~A~~~~~~m-~~------------------~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 425 (600)
.+......+.+.|++++|.+.|++. .. .| +...|..+..++...|+++.|+..+++++++
T Consensus 13 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~ 92 (162)
T 3rkv_A 13 ALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKR 92 (162)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Confidence 3444555555555655555555543 11 12 2457888888899999999999999999999
Q ss_pred CCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007517 426 EPKNAGPYILLSNIYASQGRFHDVAELRKNMRKR 459 (600)
Q Consensus 426 ~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 459 (600)
+|+++..|..++.+|...|++++|.+.+++..+.
T Consensus 93 ~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 93 EETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 9999899999999999999999999999887664
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.22 E-value=1.4e-05 Score=69.10 Aligned_cols=107 Identities=15% Similarity=0.040 Sum_probs=83.0
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 007517 329 VTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM-PFEP-DAIIWGSLLGAC 406 (600)
Q Consensus 329 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~ 406 (600)
..+..+...+...|++++|.+.|+...+.. +.+...|..+..+|.+.|++++|.+.|++. .+.| +...|..+..++
T Consensus 12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 89 (164)
T 3sz7_A 12 DKLKSEGNAAMARKEYSKAIDLYTQALSIA--PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLAR 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 345556666777777777777777776642 335777888888888888888888888877 3334 577899999999
Q ss_pred HHcCCHHHHHHHHHHHhccCCCCCchHHHHH
Q 007517 407 RTHMKLDLAEVAAKKLLQLEPKNAGPYILLS 437 (600)
Q Consensus 407 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 437 (600)
...|++++|...++++++++|+++..+....
T Consensus 90 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 120 (164)
T 3sz7_A 90 FDMADYKGAKEAYEKGIEAEGNGGSDAMKRG 120 (164)
T ss_dssp HHTTCHHHHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 9999999999999999999999987655443
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.21 E-value=0.00064 Score=65.75 Aligned_cols=225 Identities=9% Similarity=0.018 Sum_probs=134.7
Q ss_pred HHHhcCCHHHHHHHHHhcccC---ChhhHHHHHHHHHHcC-ChHHHHHHHHHHHHcCCccC-chhHhhHHHHHhhh-c-c
Q 007517 170 GLGQNGEVQKARVVFDQMREK---DDATWSGMIKVYERKG-YELEVIDLFTLMQKEGVRVN-FPSLISVLSVCASL-A-S 242 (600)
Q Consensus 170 ~~~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~-~-~ 242 (600)
...+.+..++|+++++++... +..+|+.--..+...| .++++++++..+.... |. ...++.--..+... + +
T Consensus 63 ~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n--PKny~aW~hR~wlL~~l~~~~ 140 (349)
T 3q7a_A 63 IAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN--LKSYQVWHHRLLLLDRISPQD 140 (349)
T ss_dssp HHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT--CCCHHHHHHHHHHHHHHCCSC
T ss_pred HHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHhcCCC
Confidence 344555667899999998753 5567888777888888 5999999999998753 43 34455544445555 5 7
Q ss_pred hHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHH--------HHHhhhhhcCC---CCHHHHHHHHHHHHhcCC---
Q 007517 243 LDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELV--------KGKLIFDNFAS---KDIVMWNSIISGYAQYGL--- 308 (600)
Q Consensus 243 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~--------~A~~~~~~~~~---~~~~~~~~li~~~~~~g~--- 308 (600)
.+++..++..+.+.. +.+..+++--...+.+.|.++ ++.+.++++.+ .|..+|+.....+.+.+.
T Consensus 141 ~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~ 219 (349)
T 3q7a_A 141 PVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAET 219 (349)
T ss_dssp CHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCCC
T ss_pred hHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcccccc
Confidence 889999999988765 456667766555555555444 55555554433 355566655555544443
Q ss_pred ----hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCH----
Q 007517 309 ----GEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQV---- 380 (600)
Q Consensus 309 ----~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~---- 380 (600)
++++++.++++... .| -|...|+-+-..+.+.|+.
T Consensus 220 ~~~~~~eELe~~~~aI~~--~P-----------------------------------~n~SaW~Ylr~Ll~~~~~~~~~~ 262 (349)
T 3q7a_A 220 SSRSLQDELIYILKSIHL--IP-----------------------------------HNVSAWNYLRGFLKHFSLPLVPI 262 (349)
T ss_dssp CHHHHHHHHHHHHHHHHH--CT-----------------------------------TCHHHHHHHHHHHHHTTCCSGGG
T ss_pred chHHHHHHHHHHHHHHHh--CC-----------------------------------CCHHHHHHHHHHHHhcCCCcccc
Confidence 34444444444432 22 2334444433334333322
Q ss_pred ----------------HHHHHHHHhC-CC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHh-ccCCCCCchHH
Q 007517 381 ----------------EDAMKLIEAM-PF-------EPDAIIWGSLLGACRTHMKLDLAEVAAKKLL-QLEPKNAGPYI 434 (600)
Q Consensus 381 ----------------~~A~~~~~~m-~~-------~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~-~~~p~~~~~~~ 434 (600)
.+..++..++ +. .+....+..|+..|...|+.++|.++++.+. +.+|-....+.
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~ 341 (349)
T 3q7a_A 263 LPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWE 341 (349)
T ss_dssp HHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHH
T ss_pred cccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHH
Confidence 2223333333 11 2467777778888888888888888888876 56776533333
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.20 E-value=1.1e-05 Score=76.80 Aligned_cols=182 Identities=8% Similarity=-0.124 Sum_probs=100.3
Q ss_pred hHHHHHHHHhcCCChHHHHHHHhhCC---CCCccchhHHHHHHHhcCCHHHHHHHHHhcccC---ChhhHHHHHHHHHHc
Q 007517 132 SWTAMLMGYTQCGRIQDAWELFKAMP---MKSVVASNSMILGLGQNGEVQKARVVFDQMREK---DDATWSGMIKVYERK 205 (600)
Q Consensus 132 t~~~ll~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~ 205 (600)
.+..+...+...|++++|...+..+. +.+...+..+...|.+.|++++|...|++..+. +...|..+..+|...
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 85 (281)
T 2c2l_A 6 ELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEM 85 (281)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 44455555666666666666666655 345556666777777777777777777776542 556677788888888
Q ss_pred CChHHHHHHHHHHHHcCCccC-chhHhhHHHHHhhhcchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHhh
Q 007517 206 GYELEVIDLFTLMQKEGVRVN-FPSLISVLSVCASLASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLI 284 (600)
Q Consensus 206 g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~ 284 (600)
|++++|+..|++..... |+ ...+...+........ .. .+........+.+..+...+...+ .|+.++|.+.
T Consensus 86 g~~~~A~~~~~~al~l~--p~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~i~~~l~~l~--~~~~~~A~~~ 157 (281)
T 2c2l_A 86 ESYDEAIANLQRAYSLA--KEQRLNFGDDIPSALRIAK---KK-RWNSIEERRIHQESELHSYLTRLI--AAERERELEE 157 (281)
T ss_dssp TCHHHHHHHHHHHHHHH--HHTTCCCCSHHHHHHHHHH---HH-HHHHHHHTCCCCCCHHHHHHHHHH--HHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHHHHH---HH-HHHHHHHHHHhhhHHHHHHHHHHH--HHHHHHHHHH
Confidence 88888888888776642 22 1222222222221111 11 112223333444555544443322 5677777777
Q ss_pred hhhcCCC---CHHHHHHHHHHHHhc-CChHHHHHHHHHHHH
Q 007517 285 FDNFASK---DIVMWNSIISGYAQY-GLGEKSLKVFHEMFS 321 (600)
Q Consensus 285 ~~~~~~~---~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~ 321 (600)
++...+. +......+...+.+. +.+++|.++|.+..+
T Consensus 158 ~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 158 CQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp TSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 7665442 222333333333333 455666666666543
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.20 E-value=2.3e-05 Score=65.99 Aligned_cols=107 Identities=15% Similarity=-0.012 Sum_probs=64.2
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCC----hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHH
Q 007517 331 LVGVLSACSYTGKVKEGREIFESMKSKYLVEPK----TEHYACMVDLLGRAGQVEDAMKLIEAM-PFEP-DAIIWGSLLG 404 (600)
Q Consensus 331 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~ 404 (600)
+..+...+...|++++|.+.|+...+. .|+ ...+..+...|.+.|++++|.+.+++. ...| +...|..+..
T Consensus 31 ~~~~a~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~ 107 (148)
T 2dba_A 31 LRKEGNELFKCGDYGGALAAYTQALGL---DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQ 107 (148)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHH---cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHH
Confidence 333333444444444444444444331 232 345555666666666666666666654 2223 4666777777
Q ss_pred HHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHH
Q 007517 405 ACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIY 440 (600)
Q Consensus 405 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 440 (600)
++...|++++|...+++++++.|+++..+..+..+.
T Consensus 108 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 143 (148)
T 2dba_A 108 ALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIS 143 (148)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 788888888888888888888888766655555544
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.20 E-value=1.4e-05 Score=65.46 Aligned_cols=108 Identities=7% Similarity=-0.092 Sum_probs=72.3
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 007517 330 TLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM-PFEP-DAIIWGSLLGACR 407 (600)
Q Consensus 330 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~ 407 (600)
.+......+...|++++|...|++..+.. +.+...|..+..+|.+.|++++|.+.+++. .+.| +...|..+..++.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRA--PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 34444555666666666666666665532 334667777777777777777777777766 2233 4667777888888
Q ss_pred HcCCHHHHHHHHHHHhccC------CCCCchHHHHHHH
Q 007517 408 THMKLDLAEVAAKKLLQLE------PKNAGPYILLSNI 439 (600)
Q Consensus 408 ~~g~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~ 439 (600)
..|++++|...++++++++ |+++.....+..+
T Consensus 84 ~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~ 121 (126)
T 3upv_A 84 AVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA 121 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHH
Confidence 8888888888888888887 6665555555444
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.14 E-value=1.8e-05 Score=64.83 Aligned_cols=96 Identities=9% Similarity=0.100 Sum_probs=78.7
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC-------CchHH
Q 007517 364 TEHYACMVDLLGRAGQVEDAMKLIEAM-PF-EPDAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKN-------AGPYI 434 (600)
Q Consensus 364 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~-------~~~~~ 434 (600)
...+..+...+...|++++|...+++. .. +.+...|..+...+...|++++|...++++++..|++ +..+.
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 455677788888888888888888876 22 3367778888888889999999999999999887765 67788
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHhC
Q 007517 435 LLSNIYASQGRFHDVAELRKNMRKR 459 (600)
Q Consensus 435 ~l~~~~~~~g~~~~a~~~~~~m~~~ 459 (600)
.++.+|...|++++|.+.++...+.
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHh
Confidence 8999999999999999999988763
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.13 E-value=8.3e-06 Score=68.90 Aligned_cols=93 Identities=15% Similarity=0.025 Sum_probs=72.8
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-------------HHHHHHHHHHHHHcCCHHHHHHHHHHHhcc-------
Q 007517 367 YACMVDLLGRAGQVEDAMKLIEAM-PFEPD-------------AIIWGSLLGACRTHMKLDLAEVAAKKLLQL------- 425 (600)
Q Consensus 367 ~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-------------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~------- 425 (600)
+......+.+.|++++|.+.|++. .+.|+ ...|..+..++...|++++|+..+++++++
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~ 93 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEL 93 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccC
Confidence 444555566666777776666655 11222 338888888899999999999999999988
Q ss_pred CCCCCchH----HHHHHHHHhcCCchHHHHHHHHHHhC
Q 007517 426 EPKNAGPY----ILLSNIYASQGRFHDVAELRKNMRKR 459 (600)
Q Consensus 426 ~p~~~~~~----~~l~~~~~~~g~~~~a~~~~~~m~~~ 459 (600)
+|+++..| ...+.++...|++++|.+.|++..+.
T Consensus 94 ~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 94 NQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp TSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 99998889 99999999999999999999988753
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.10 E-value=9.4e-06 Score=66.73 Aligned_cols=89 Identities=17% Similarity=0.172 Sum_probs=56.6
Q ss_pred HHHHHhhcCCHHHHHHHHHhC-CCCCC-H---HHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC---CchHHHHHHHHH
Q 007517 370 MVDLLGRAGQVEDAMKLIEAM-PFEPD-A---IIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKN---AGPYILLSNIYA 441 (600)
Q Consensus 370 li~~~~~~g~~~~A~~~~~~m-~~~p~-~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~ 441 (600)
+...+.+.|++++|.+.|++. ...|+ . ..+..+..++...|++++|...++++++..|++ +..+..++.+|.
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~ 87 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQY 87 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHH
Confidence 445556666666666666655 11222 2 355566666667777777777777777777766 455666777777
Q ss_pred hcCCchHHHHHHHHHHh
Q 007517 442 SQGRFHDVAELRKNMRK 458 (600)
Q Consensus 442 ~~g~~~~a~~~~~~m~~ 458 (600)
..|++++|.+.++...+
T Consensus 88 ~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 88 GEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 77777777777776654
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.10 E-value=2.1e-05 Score=65.38 Aligned_cols=100 Identities=11% Similarity=-0.071 Sum_probs=70.1
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHH
Q 007517 327 DDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM-PFEP-DAIIWGSLLG 404 (600)
Q Consensus 327 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~ 404 (600)
+...+..+...+...|++++|...|+...+.. +.+...|..+...|.+.|++++|...+++. ...| +...|..+..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN--PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence 34555666666666777777777777666532 334667777777777777777777777766 2233 4667778888
Q ss_pred HHHHcCCHHHHHHHHHHHhccCCC
Q 007517 405 ACRTHMKLDLAEVAAKKLLQLEPK 428 (600)
Q Consensus 405 ~~~~~g~~~~a~~~~~~~~~~~p~ 428 (600)
++...|++++|...+++++++.|+
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHChh
Confidence 888888888888888888887776
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.09 E-value=0.00043 Score=66.59 Aligned_cols=230 Identities=11% Similarity=0.060 Sum_probs=130.1
Q ss_pred HcCCh-HHHHHHHHHHHHcCCccCchhH-hh---HHHHHhhh-------cchHHHHHHHHHHHHcCCCCchhhHHHHHHH
Q 007517 204 RKGYE-LEVIDLFTLMQKEGVRVNFPSL-IS---VLSVCASL-------ASLDHGRQVHAQLVRCQFDVDVYVASVLITM 271 (600)
Q Consensus 204 ~~g~~-~~A~~~~~~m~~~g~~p~~~t~-~~---ll~~~~~~-------~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 271 (600)
+.|.+ ++|++++..+... .|+..|. +. ++...... ..++++..++..+.... +-+..+|+.-...
T Consensus 41 ~~~e~s~eaL~~t~~~L~~--nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wl 117 (331)
T 3dss_A 41 QAGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWL 117 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 44444 3677777777653 4554432 21 12221111 12566666777776654 4466667666666
Q ss_pred HHHcC--CHHHHHhhhhhcCC---CCHHHHHHHHHHHHhcCC-hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc----
Q 007517 272 YIKCG--ELVKGKLIFDNFAS---KDIVMWNSIISGYAQYGL-GEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYT---- 341 (600)
Q Consensus 272 y~~~g--~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~---- 341 (600)
+.+.| .++++..+++.+.+ +|..+|+.-.-.+...|. ++++++.+.++.+.. .-|...|+.....+.+.
T Consensus 118 L~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW~~R~~ll~~l~~~~ 196 (331)
T 3dss_A 118 LSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQP 196 (331)
T ss_dssp HHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHHSCCC
T ss_pred HhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhhhcc
Confidence 66666 37778777777654 567777777666677776 478888888887753 22333444333333222
Q ss_pred ----------CCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhc-----------CCHHHHHHHHHhC-CCCCCHHHH
Q 007517 342 ----------GKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRA-----------GQVEDAMKLIEAM-PFEPDAIIW 399 (600)
Q Consensus 342 ----------g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~-----------g~~~~A~~~~~~m-~~~p~~~~~ 399 (600)
+.++++.+.+....... +-|...|+-+-..+.+. +.++++++.++++ ...||. .|
T Consensus 197 ~~~~~~~~~~~~~~eEle~~~~ai~~~--P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~-~w 273 (331)
T 3dss_A 197 DSGPQGRLPENVLLKELELVQNAFFTD--PNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPEN-KW 273 (331)
T ss_dssp ------CCCHHHHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTC-HH
T ss_pred ccccccccchHHHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCccc-ch
Confidence 34667777777766532 34566666555555554 3466677666666 334543 33
Q ss_pred HHHHHHH-----HHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHH
Q 007517 400 GSLLGAC-----RTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIY 440 (600)
Q Consensus 400 ~~ll~~~-----~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 440 (600)
..+..+. ...|..++....+.++.+++|....-|.-+...+
T Consensus 274 ~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~~~ 319 (331)
T 3dss_A 274 CLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKF 319 (331)
T ss_dssp HHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHHHH
Confidence 3222111 1245666777777777777776655555554433
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.09 E-value=2.1e-05 Score=62.34 Aligned_cols=99 Identities=14% Similarity=0.035 Sum_probs=67.8
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC---CHHHHHHHHHH
Q 007517 330 TLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM-PFEP---DAIIWGSLLGA 405 (600)
Q Consensus 330 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p---~~~~~~~ll~~ 405 (600)
.+..+...+...|++++|...+++..+.. +.+...+..+...|.+.|++++|.+.+++. ...| +...|..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQLD--PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 44445555666677777777776666532 334666777777777777777777777766 2233 46677777778
Q ss_pred HHHc-CCHHHHHHHHHHHhccCCCCC
Q 007517 406 CRTH-MKLDLAEVAAKKLLQLEPKNA 430 (600)
Q Consensus 406 ~~~~-g~~~~a~~~~~~~~~~~p~~~ 430 (600)
+... |++++|...++++++..|+++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 8888 888888888888888877653
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.07 E-value=2e-05 Score=77.17 Aligned_cols=97 Identities=9% Similarity=-0.025 Sum_probs=84.8
Q ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----------------HHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q 007517 363 KTEHYACMVDLLGRAGQVEDAMKLIEAM-PFEPD----------------AIIWGSLLGACRTHMKLDLAEVAAKKLLQL 425 (600)
Q Consensus 363 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----------------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 425 (600)
+...+..+...|.+.|++++|.+.|++. .+.|+ ...|..+..++...|++++|+..+++++++
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3567777888888888888888888876 22333 578999999999999999999999999999
Q ss_pred CCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007517 426 EPKNAGPYILLSNIYASQGRFHDVAELRKNMRKR 459 (600)
Q Consensus 426 ~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 459 (600)
+|+++..+..++.+|...|++++|.+.+++..+.
T Consensus 226 ~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 259 (336)
T 1p5q_A 226 DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL 259 (336)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998764
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.06 E-value=2.7e-05 Score=79.81 Aligned_cols=160 Identities=12% Similarity=0.066 Sum_probs=111.1
Q ss_pred CHHHHHhhhhhcCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHH
Q 007517 277 ELVKGKLIFDNFAS---KDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFES 353 (600)
Q Consensus 277 ~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 353 (600)
++++|...|+.... .....|..+...|.+.|++++|+..|++..+. .|+...+ . -+... .
T Consensus 249 ~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~----------~-~~~~~----~ 311 (457)
T 1kt0_A 249 SFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSW--LEMEYGL----------S-EKESK----A 311 (457)
T ss_dssp EEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTTCCSC----------C-HHHHH----H
T ss_pred hcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccC----------C-hHHHH----H
Confidence 44445555544332 23457777888888888888888888887763 2222110 0 01111 0
Q ss_pred hHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCc
Q 007517 354 MKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM-PFEP-DAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAG 431 (600)
Q Consensus 354 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 431 (600)
.. +.....|..+..+|.+.|++++|.+.+++. .+.| +...|..+..+|...|++++|...++++++++|++..
T Consensus 312 ~~-----~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~ 386 (457)
T 1kt0_A 312 SE-----SFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKA 386 (457)
T ss_dssp HH-----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----C
T ss_pred HH-----HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH
Confidence 10 112467888999999999999999999887 3334 6788999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhcCCchHHHH-HHHHHHh
Q 007517 432 PYILLSNIYASQGRFHDVAE-LRKNMRK 458 (600)
Q Consensus 432 ~~~~l~~~~~~~g~~~~a~~-~~~~m~~ 458 (600)
.+..++.++...|+++++.+ .++.|..
T Consensus 387 a~~~l~~~~~~~~~~~~a~~~~~~~~f~ 414 (457)
T 1kt0_A 387 ARLQISMCQKKAKEHNERDRRIYANMFK 414 (457)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999988774 4555543
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.06 E-value=3e-06 Score=68.71 Aligned_cols=82 Identities=17% Similarity=0.109 Sum_probs=46.1
Q ss_pred cCCHHHHHHHHHhC-CC---CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHH
Q 007517 377 AGQVEDAMKLIEAM-PF---EP-DAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAE 451 (600)
Q Consensus 377 ~g~~~~A~~~~~~m-~~---~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 451 (600)
.|++++|.+.|++. .. .| +...|..+...+...|++++|...++++++++|+++..+..++.+|...|++++|.+
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 34555555555544 22 13 234455566666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHh
Q 007517 452 LRKNMRK 458 (600)
Q Consensus 452 ~~~~m~~ 458 (600)
.+++..+
T Consensus 83 ~~~~al~ 89 (117)
T 3k9i_A 83 LLLKIIA 89 (117)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6665543
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.05 E-value=5.3e-05 Score=67.72 Aligned_cols=118 Identities=10% Similarity=-0.017 Sum_probs=86.5
Q ss_pred ccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-C----------------HHHHHH
Q 007517 340 YTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM-PFEP-D----------------AIIWGS 401 (600)
Q Consensus 340 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~----------------~~~~~~ 401 (600)
..|.++.+.+.++..... .......+..+...+.+.|++++|.+.|++. ...| + ...|..
T Consensus 16 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (198)
T 2fbn_A 16 NLYFQGAKKSIYDYTDEE--KVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLN 93 (198)
T ss_dssp ------CCCSGGGCCHHH--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHH
T ss_pred hhhhccccCchhhCCHHH--HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHH
Confidence 345555555554422221 0112445667777788888888888888766 2122 1 268888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007517 402 LLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMRKR 459 (600)
Q Consensus 402 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 459 (600)
+..++...|++++|...++++++++|+++..+..++.+|...|++++|.+.+++..+.
T Consensus 94 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 151 (198)
T 2fbn_A 94 LATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASL 151 (198)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999988764
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.04 E-value=1.7e-05 Score=64.96 Aligned_cols=107 Identities=9% Similarity=-0.043 Sum_probs=60.8
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CC----CCC----HHHHHH
Q 007517 331 LVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM-PF----EPD----AIIWGS 401 (600)
Q Consensus 331 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~----~p~----~~~~~~ 401 (600)
+..+...+...|++++|...|+...+.. +.+...+..+...|.+.|++++|...+++. .. .++ ..+|..
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKELD--PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 3334444445555555555555554431 234455555666666666666666666554 11 122 556667
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHH
Q 007517 402 LLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIY 440 (600)
Q Consensus 402 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 440 (600)
+...+...|++++|...++++++..| ++.....+..+.
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~ 122 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAE 122 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHH
Confidence 77777777788888888877777777 344444444443
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.01 E-value=2.7e-05 Score=63.44 Aligned_cols=97 Identities=12% Similarity=0.092 Sum_probs=68.5
Q ss_pred HHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHc
Q 007517 332 VGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM-PFEP-DAIIWGSLLGACRTH 409 (600)
Q Consensus 332 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~ 409 (600)
..+...+...|++++|...|+...+.. +.+...|..+..++.+.|++++|...|++. .+.| +...|..+..++...
T Consensus 21 ~~~g~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 21 MEEGLSMLKLANLAEAALAFEAVCQKE--PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 344456667788888888887777642 345777778888888888888888888776 3344 466788888888888
Q ss_pred CCHHHHHHHHHHHhccCCCCC
Q 007517 410 MKLDLAEVAAKKLLQLEPKNA 430 (600)
Q Consensus 410 g~~~~a~~~~~~~~~~~p~~~ 430 (600)
|++++|...++++++++|+++
T Consensus 99 g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 99 HNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHHC------
T ss_pred CCHHHHHHHHHHHHHhCcCCC
Confidence 888888888888888888753
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.00 E-value=7.4e-05 Score=61.20 Aligned_cols=99 Identities=13% Similarity=0.006 Sum_probs=67.2
Q ss_pred HHHHHhccCCHHHHHHHHHHhHhcCCCCCCh---HHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHH
Q 007517 334 VLSACSYTGKVKEGREIFESMKSKYLVEPKT---EHYACMVDLLGRAGQVEDAMKLIEAM-PFEPD----AIIWGSLLGA 405 (600)
Q Consensus 334 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~---~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~ 405 (600)
+...+...|++++|...|+.+.+.. +.+. ..+..+...|.+.|++++|.+.+++. ...|+ ...+..+..+
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELY--PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHH
Confidence 3344556677777777777666542 1222 46666777777788888887777766 22232 4567777788
Q ss_pred HHHcCCHHHHHHHHHHHhccCCCCCchHH
Q 007517 406 CRTHMKLDLAEVAAKKLLQLEPKNAGPYI 434 (600)
Q Consensus 406 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 434 (600)
+...|++++|...++++++..|+++....
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 114 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQYPGSDAARV 114 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTSHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCCCChHHHH
Confidence 88888888898888888888888754433
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.00 E-value=5.5e-05 Score=76.85 Aligned_cols=164 Identities=8% Similarity=-0.083 Sum_probs=108.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCCHH----HHHHHHHHHhccCCHHHHHHHHHHhHhc---CCCCC-ChH
Q 007517 295 MWNSIISGYAQYGLGEKSLKVFHEMFSSG-VMPDDV----TLVGVLSACSYTGKVKEGREIFESMKSK---YLVEP-KTE 365 (600)
Q Consensus 295 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~----t~~~ll~a~~~~g~~~~a~~~~~~~~~~---~~~~p-~~~ 365 (600)
++..+...|...|++++|.+++.++...- ..++.. ..+.+-..+...|+.+++.+++...... .+..+ ...
T Consensus 57 al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 136 (434)
T 4b4t_Q 57 SILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHS 136 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHH
Confidence 35667777888888888888777765421 112221 1222223344567888888887765431 11122 256
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC-----C--CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhccC---CCC----C
Q 007517 366 HYACMVDLLGRAGQVEDAMKLIEAM-----P--FEPD-AIIWGSLLGACRTHMKLDLAEVAAKKLLQLE---PKN----A 430 (600)
Q Consensus 366 ~~~~li~~~~~~g~~~~A~~~~~~m-----~--~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---p~~----~ 430 (600)
++..++..|...|++++|..++++. + -+|. ..++..++..|...|++++|..++++++... ++. .
T Consensus 137 ~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 216 (434)
T 4b4t_Q 137 LSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVA 216 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHH
Confidence 7788889999999999999888765 1 1222 4467788888999999999999998887643 222 2
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007517 431 GPYILLSNIYASQGRFHDVAELRKNMRK 458 (600)
Q Consensus 431 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 458 (600)
..+..++..+...|++++|...+....+
T Consensus 217 ~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 217 ELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3456677788888999999888776643
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.00 E-value=0.00068 Score=65.23 Aligned_cols=217 Identities=9% Similarity=0.016 Sum_probs=152.7
Q ss_pred hhcch-HHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCC----------HHHHHhhhhhcCC---CCHHHHHHHHHHHH
Q 007517 239 SLASL-DHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGE----------LVKGKLIFDNFAS---KDIVMWNSIISGYA 304 (600)
Q Consensus 239 ~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~----------~~~A~~~~~~~~~---~~~~~~~~li~~~~ 304 (600)
+.|.+ ++|......++..+ |.+..+++.--..+...|. ++++..+++.+.. ++..+|+.-.-.+.
T Consensus 41 ~~~e~s~eaL~~t~~~L~~n-P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~ 119 (331)
T 3dss_A 41 QAGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLS 119 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHh
Confidence 33443 46788888888765 3344555544333333332 6788888887653 58889998888888
Q ss_pred hcCC--hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC-HHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhc----
Q 007517 305 QYGL--GEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGK-VKEGREIFESMKSKYLVEPKTEHYACMVDLLGRA---- 377 (600)
Q Consensus 305 ~~g~--~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~-~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~---- 377 (600)
..|. ++++++++.++.+.. +-|...|+.--.++...|. ++++.+.++.+.+.. +.|...|+....++.+.
T Consensus 120 ~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~--p~N~SAW~~R~~ll~~l~~~~ 196 (331)
T 3dss_A 120 RLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN--FSNYSSWHYRSCLLPQLHPQP 196 (331)
T ss_dssp HCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHHSCCC
T ss_pred ccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHhhhcc
Confidence 8784 899999999999853 3355566665556667777 689999999998863 45777888777777665
Q ss_pred ----------CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHhccCCCCCchHH
Q 007517 378 ----------GQVEDAMKLIEAM-PFEP-DAIIWGSLLGACRTH-----------MKLDLAEVAAKKLLQLEPKNAGPYI 434 (600)
Q Consensus 378 ----------g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~-----------g~~~~a~~~~~~~~~~~p~~~~~~~ 434 (600)
+.++++++.+++. ...| |...|+.+-..+... +.+++++..++++++++|++.-.+.
T Consensus 197 ~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w~l~ 276 (331)
T 3dss_A 197 DSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKWCLL 276 (331)
T ss_dssp ------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred ccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccchHHH
Confidence 5588899988877 2234 678888776666555 4578999999999999999854444
Q ss_pred HHHHH---HHhcCCchHHHHHHHHHHhC
Q 007517 435 LLSNI---YASQGRFHDVAELRKNMRKR 459 (600)
Q Consensus 435 ~l~~~---~~~~g~~~~a~~~~~~m~~~ 459 (600)
.++.. ....|..++....+.++.+.
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 304 (331)
T 3dss_A 277 TIILLMRALDPLLYEKETLQYFSTLKAV 304 (331)
T ss_dssp HHHHHHHHHCTTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccccHHHHHHHHHHHHHh
Confidence 43322 22467778888888888763
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.96 E-value=5.5e-05 Score=77.53 Aligned_cols=124 Identities=10% Similarity=-0.007 Sum_probs=97.0
Q ss_pred HHhccCCHHHHHHHHHHhHhcC--CCCC----ChHHHHHHHHHHhhcCCHHHHHHHHHhC---------CCCCC-HHHHH
Q 007517 337 ACSYTGKVKEGREIFESMKSKY--LVEP----KTEHYACMVDLLGRAGQVEDAMKLIEAM---------PFEPD-AIIWG 400 (600)
Q Consensus 337 a~~~~g~~~~a~~~~~~~~~~~--~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m---------~~~p~-~~~~~ 400 (600)
.+...|++++|..++++..+.. -+.| ...+++.|..+|...|++++|..++++. +..|+ ..+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 3456788888888887765421 1122 2567889999999999999999988775 33454 45689
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhc-----cCCCCCch---HHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 007517 401 SLLGACRTHMKLDLAEVAAKKLLQ-----LEPKNAGP---YILLSNIYASQGRFHDVAELRKNMRKRN 460 (600)
Q Consensus 401 ~ll~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~~---~~~l~~~~~~~g~~~~a~~~~~~m~~~g 460 (600)
.|...|...|++++|+.+++++++ +.|++|.+ ...+..++...|++++|..+++++++.-
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999886 47887655 4567888889999999999999998743
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.96 E-value=3.8e-05 Score=65.47 Aligned_cols=93 Identities=16% Similarity=0.078 Sum_probs=56.9
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC----CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC------CCCc
Q 007517 366 HYACMVDLLGRAGQVEDAMKLIEAM----PFEPD----AIIWGSLLGACRTHMKLDLAEVAAKKLLQLEP------KNAG 431 (600)
Q Consensus 366 ~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p------~~~~ 431 (600)
.+..+...|...|++++|.+.+++. +..++ ...+..+...+...|++++|...+++++++.+ ..+.
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 130 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 130 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence 4445555555555555555555543 00111 33456666667777777777777777665421 1134
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007517 432 PYILLSNIYASQGRFHDVAELRKNMRK 458 (600)
Q Consensus 432 ~~~~l~~~~~~~g~~~~a~~~~~~m~~ 458 (600)
.+..++.+|...|++++|.+.+++..+
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 567788888888888888888877654
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.94 E-value=4e-05 Score=76.06 Aligned_cols=138 Identities=9% Similarity=-0.028 Sum_probs=104.0
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHH
Q 007517 293 IVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVD 372 (600)
Q Consensus 293 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 372 (600)
...|..+...+.+.|++++|++.|++..+. .|+.. .... .+...+. -+.+...|..+..
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~--~~~~~----------~~~~-------~~~~~~~--~~~~~~~~~nla~ 281 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRY--VEGSR----------AAAE-------DADGAKL--QPVALSCVLNIGA 281 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHHH----------HHSC-------HHHHGGG--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hhcCc----------cccC-------hHHHHHH--HHHHHHHHHHHHH
Confidence 345777788888888888888888887652 11100 0001 1111111 0224678889999
Q ss_pred HHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHH
Q 007517 373 LLGRAGQVEDAMKLIEAM-PFEP-DAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVA 450 (600)
Q Consensus 373 ~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 450 (600)
+|.+.|++++|.+.+++. ...| +...|..+..++...|++++|...++++++++|+++..+..+..++...++.+++.
T Consensus 282 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 282 CKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999987 5555 57789999999999999999999999999999999888899999998888877765
Q ss_pred H
Q 007517 451 E 451 (600)
Q Consensus 451 ~ 451 (600)
+
T Consensus 362 k 362 (370)
T 1ihg_A 362 K 362 (370)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.92 E-value=0.00012 Score=60.00 Aligned_cols=31 Identities=16% Similarity=-0.042 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhccCCC
Q 007517 398 IWGSLLGACRTHMKLDLAEVAAKKLLQLEPK 428 (600)
Q Consensus 398 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 428 (600)
+|..+..++...|++++|+..++++++..|+
T Consensus 85 ~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~ 115 (127)
T 4gcn_A 85 AMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD 115 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence 4555666666777777777777777766664
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.91 E-value=3.3e-05 Score=75.73 Aligned_cols=148 Identities=12% Similarity=0.027 Sum_probs=86.4
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHH
Q 007517 292 DIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMV 371 (600)
Q Consensus 292 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li 371 (600)
....|..+...+.+.|++++|+..|++.... .|+... +...|+.+++...+. ...|..+.
T Consensus 178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~-----------~~~~~nla 237 (338)
T 2if4_A 178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK-----------NPCHLNIA 237 (338)
T ss_dssp HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH-----------THHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH-----------HHHHHHHH
Confidence 3456777888888999999999999998763 555442 233344444433221 23778899
Q ss_pred HHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHH-HhcCCchH
Q 007517 372 DLLGRAGQVEDAMKLIEAM-PFEP-DAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIY-ASQGRFHD 448 (600)
Q Consensus 372 ~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~~~ 448 (600)
.+|.+.|++++|.+.+++. ...| +...|..+..++...|++++|...++++++++|+++..+..|..+. ...+..++
T Consensus 238 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~ 317 (338)
T 2if4_A 238 ACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQK 317 (338)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999887 3344 6788999999999999999999999999999999988888888774 45567778
Q ss_pred HHHHHHHHHhC
Q 007517 449 VAELRKNMRKR 459 (600)
Q Consensus 449 a~~~~~~m~~~ 459 (600)
+.++++.|.+.
T Consensus 318 a~~~~~~~l~~ 328 (338)
T 2if4_A 318 QKEMYKGIFKG 328 (338)
T ss_dssp -----------
T ss_pred HHHHHHHhhCC
Confidence 88888887654
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.89 E-value=4.6e-05 Score=64.96 Aligned_cols=131 Identities=11% Similarity=0.010 Sum_probs=70.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCCH----HHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCC----ChH
Q 007517 295 MWNSIISGYAQYGLGEKSLKVFHEMFSSGV-MPDD----VTLVGVLSACSYTGKVKEGREIFESMKSKYLVEP----KTE 365 (600)
Q Consensus 295 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p----~~~ 365 (600)
++..+...|...|++++|+..+++..+... .++. .++..+...+...|++++|.+.++...+...-.+ ...
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 344444445555555555555554433210 0110 2344445555556666666666555443210001 134
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC-------CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q 007517 366 HYACMVDLLGRAGQVEDAMKLIEAM-------PFEP-DAIIWGSLLGACRTHMKLDLAEVAAKKLLQL 425 (600)
Q Consensus 366 ~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 425 (600)
.+..+...|...|++++|.+.+++. +..+ ....+..+...+...|++++|...+++++++
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 5666667777777777777766654 1111 1345666777788888888888888887764
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.87 E-value=5.3e-05 Score=74.24 Aligned_cols=150 Identities=10% Similarity=0.028 Sum_probs=80.8
Q ss_pred hhhHHHHHHHHHHcCCHHHHHhhhhhcCC--CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 007517 262 VYVASVLITMYIKCGELVKGKLIFDNFAS--KDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACS 339 (600)
Q Consensus 262 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 339 (600)
...+..+...|.+.|++++|...|++... ++.. .+...|+.+++...+. ...+..+..++.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~-------~~~~~~~~~~~~~~l~----------~~~~~nla~~~~ 241 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF-------MFQLYGKYQDMALAVK----------NPCHLNIAACLI 241 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHH-------HHTCCHHHHHHHHHHH----------THHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccch-------hhhhcccHHHHHHHHH----------HHHHHHHHHHHH
Confidence 34566788888899999999999988654 2222 1223334444433321 135667777888
Q ss_pred ccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHH-HHHcCCHHHHH
Q 007517 340 YTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM-PFEPD-AIIWGSLLGA-CRTHMKLDLAE 416 (600)
Q Consensus 340 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~-~~~~g~~~~a~ 416 (600)
+.|++++|...++...+.. +.+...|..+..+|...|++++|.+.|++. .+.|+ ...+..|... ....+..+.+.
T Consensus 242 ~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~ 319 (338)
T 2if4_A 242 KLKRYDEAIGHCNIVLTEE--EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQK 319 (338)
T ss_dssp TTTCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred HcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999887742 346788899999999999999999999988 55564 3445555444 33456778888
Q ss_pred HHHHHHhccCCCCC
Q 007517 417 VAAKKLLQLEPKNA 430 (600)
Q Consensus 417 ~~~~~~~~~~p~~~ 430 (600)
..+.++++..|+++
T Consensus 320 ~~~~~~l~~~p~~~ 333 (338)
T 2if4_A 320 EMYKGIFKGKDEGG 333 (338)
T ss_dssp --------------
T ss_pred HHHHHhhCCCCCCC
Confidence 89999999888764
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.86 E-value=3.5e-05 Score=61.22 Aligned_cols=92 Identities=11% Similarity=0.002 Sum_probs=75.7
Q ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC------CchHH
Q 007517 363 KTEHYACMVDLLGRAGQVEDAMKLIEAM-PFEP-DAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKN------AGPYI 434 (600)
Q Consensus 363 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~ 434 (600)
+...+..+...+.+.|++++|.+.|++. ...| +...|..+..++...|++++|...++++++++|++ +..+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 4567778888999999999999999877 3334 67889999999999999999999999999999998 66777
Q ss_pred HHHHHHHhcCCchHHHHHHH
Q 007517 435 LLSNIYASQGRFHDVAELRK 454 (600)
Q Consensus 435 ~l~~~~~~~g~~~~a~~~~~ 454 (600)
.++.++...|++++|.+.++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHHhHhhhHhHHH
Confidence 88888888887777765443
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.83 E-value=1.9e-05 Score=63.88 Aligned_cols=92 Identities=10% Similarity=0.003 Sum_probs=62.0
Q ss_pred cCCHHHHHHHHHHhHhcCC-CCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHH
Q 007517 341 TGKVKEGREIFESMKSKYL-VEPKTEHYACMVDLLGRAGQVEDAMKLIEAM-PFEP-DAIIWGSLLGACRTHMKLDLAEV 417 (600)
Q Consensus 341 ~g~~~~a~~~~~~~~~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~ 417 (600)
.|++++|...|++..+... -+.+...+..+...|.+.|++++|.+.|++. ...| +...+..+..++...|++++|..
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 4666667777776664210 0223566777777888888888888888776 2233 46677778888888888888888
Q ss_pred HHHHHhccCCCCCch
Q 007517 418 AAKKLLQLEPKNAGP 432 (600)
Q Consensus 418 ~~~~~~~~~p~~~~~ 432 (600)
.++++++..|+++..
T Consensus 83 ~~~~al~~~p~~~~~ 97 (117)
T 3k9i_A 83 LLLKIIAETSDDETI 97 (117)
T ss_dssp HHHHHHHHHCCCHHH
T ss_pred HHHHHHHhCCCcHHH
Confidence 888888888877543
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.83 E-value=4.2e-05 Score=64.60 Aligned_cols=70 Identities=16% Similarity=0.113 Sum_probs=56.4
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC-CC-------CCC-HHHH----HHHHHHHHHcCCHHHHHHHHHHHhccCCCCCch
Q 007517 366 HYACMVDLLGRAGQVEDAMKLIEAM-PF-------EPD-AIIW----GSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGP 432 (600)
Q Consensus 366 ~~~~li~~~~~~g~~~~A~~~~~~m-~~-------~p~-~~~~----~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 432 (600)
.|..+..++.+.|++++|+..+++. .+ .|+ ...| .....++...|++++|+..|+++++++|++...
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~ 138 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE 138 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHH
Confidence 6777777788888888777777665 33 776 4578 899999999999999999999999999988655
Q ss_pred HHH
Q 007517 433 YIL 435 (600)
Q Consensus 433 ~~~ 435 (600)
+..
T Consensus 139 ~~~ 141 (159)
T 2hr2_A 139 TPG 141 (159)
T ss_dssp CTT
T ss_pred HHH
Confidence 433
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.82 E-value=9.9e-05 Score=73.20 Aligned_cols=65 Identities=8% Similarity=-0.028 Sum_probs=60.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007517 395 DAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMRKR 459 (600)
Q Consensus 395 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 459 (600)
+...|..+..++.+.|++++|+..++++++++|+++..+..++.+|...|++++|.+.+++..+.
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l 336 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI 336 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 45678899999999999999999999999999999999999999999999999999999998764
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.81 E-value=0.00018 Score=73.66 Aligned_cols=96 Identities=9% Similarity=-0.043 Sum_probs=81.6
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----------------HHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Q 007517 364 TEHYACMVDLLGRAGQVEDAMKLIEAM-PFEPD----------------AIIWGSLLGACRTHMKLDLAEVAAKKLLQLE 426 (600)
Q Consensus 364 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----------------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 426 (600)
...|..+...|.+.|++++|...|++. .+.|+ ...|..+..++.+.|++++|+..++++++++
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 347 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 347 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 445666777777788888887777766 21222 5788999999999999999999999999999
Q ss_pred CCCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007517 427 PKNAGPYILLSNIYASQGRFHDVAELRKNMRKR 459 (600)
Q Consensus 427 p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 459 (600)
|+++.+|..++.+|...|++++|...+++..+.
T Consensus 348 p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l 380 (457)
T 1kt0_A 348 SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV 380 (457)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999998865
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.80 E-value=0.00024 Score=72.09 Aligned_cols=158 Identities=9% Similarity=0.023 Sum_probs=117.2
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCC----------------HHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCCh
Q 007517 301 SGYAQYGLGEKSLKVFHEMFSSGVMPD----------------DVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKT 364 (600)
Q Consensus 301 ~~~~~~g~~~~A~~~~~~m~~~g~~p~----------------~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~ 364 (600)
..+.+.|++++|++.|.++.+...... ...+..+...|...|++++|.+++..+.+..+-.++.
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~ 91 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS 91 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence 345677888888888888877532211 1236778889999999999999999887643222222
Q ss_pred ----HHHHHHHHHHhhcCCHHHHHHHHHhC-------CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhcc------C
Q 007517 365 ----EHYACMVDLLGRAGQVEDAMKLIEAM-------PFEPD-AIIWGSLLGACRTHMKLDLAEVAAKKLLQL------E 426 (600)
Q Consensus 365 ----~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~------~ 426 (600)
.+.+.+...+...|++++|.++++.. +..+. ..++..|...+...|++++|..+++++... .
T Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~ 171 (434)
T 4b4t_Q 92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDK 171 (434)
T ss_dssp HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCS
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccc
Confidence 23455566677789999999988765 22333 557888999999999999999999988763 1
Q ss_pred CCCCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007517 427 PKNAGPYILLSNIYASQGRFHDVAELRKNMRK 458 (600)
Q Consensus 427 p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 458 (600)
|.....+..++.+|...|++++|..++++...
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 203 (434)
T 4b4t_Q 172 PSLVDVHLLESKVYHKLRNLAKSKASLTAART 203 (434)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 22345688899999999999999999988764
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.80 E-value=0.00085 Score=70.42 Aligned_cols=168 Identities=7% Similarity=-0.048 Sum_probs=132.2
Q ss_pred HHHHHhhhhhcCC---CCHHHHHHHHHHHHhcCC----------hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC--
Q 007517 278 LVKGKLIFDNFAS---KDIVMWNSIISGYAQYGL----------GEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTG-- 342 (600)
Q Consensus 278 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g-- 342 (600)
-++|.+.++.+.. .+..+|+.--..+...|+ ++++++.++++.+.. +-+...|..-..++.+.|
T Consensus 45 ~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~~ 123 (567)
T 1dce_A 45 DESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEP 123 (567)
T ss_dssp SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSC
T ss_pred CHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccc
Confidence 4566777776653 456778776666666666 899999999998752 334456776666777888
Q ss_pred CHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcC-CHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHc----------
Q 007517 343 KVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAG-QVEDAMKLIEAM-PFEP-DAIIWGSLLGACRTH---------- 409 (600)
Q Consensus 343 ~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~---------- 409 (600)
+++++.+.++++.+.. +-+...|+.-..++.+.| .++++.+.++++ ...| |...|+.....+...
T Consensus 124 ~~~~el~~~~k~l~~d--~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~ 201 (567)
T 1dce_A 124 NWARELELCARFLEAD--ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQG 201 (567)
T ss_dssp CHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCC
T ss_pred cHHHHHHHHHHHHhhc--cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccccc
Confidence 6799999999998853 456788888888888889 899999999988 4445 677888888776663
Q ss_pred ----CCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchH
Q 007517 410 ----MKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHD 448 (600)
Q Consensus 410 ----g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 448 (600)
+.++++.+.+.+++.++|++..+|..+..++...|+.++
T Consensus 202 ~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 202 RLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 557999999999999999999999999999999988655
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.79 E-value=7.6e-05 Score=64.22 Aligned_cols=119 Identities=17% Similarity=0.103 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHH
Q 007517 293 IVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVD 372 (600)
Q Consensus 293 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 372 (600)
...|......+.+.|++++|+..|.+.... +............. ...+. +.+...|..+..
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~------------~~~~~~~~~~~~~~--~~~~~-----~~~~~~~~nla~ 71 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTR------------LDTLILREKPGEPE--WVELD-----RKNIPLYANMSQ 71 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------HHHHHHTSCTTSHH--HHHHH-----HTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH------------HHHhcccCCCCHHH--HHHHH-----HHHHHHHHHHHH
Confidence 456677777788888888888888776642 00000000000000 00000 223567888999
Q ss_pred HHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCC
Q 007517 373 LLGRAGQVEDAMKLIEAM-PFEP-DAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNA 430 (600)
Q Consensus 373 ~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 430 (600)
+|.+.|++++|...+++. .+.| +...|..+..++...|++++|...++++++++|+++
T Consensus 72 ~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~ 131 (162)
T 3rkv_A 72 CYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAA 131 (162)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGH
T ss_pred HHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCH
Confidence 999999999999999877 3344 577899999999999999999999999999999986
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.78 E-value=8.2e-05 Score=56.48 Aligned_cols=82 Identities=24% Similarity=0.309 Sum_probs=67.3
Q ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHH
Q 007517 363 KTEHYACMVDLLGRAGQVEDAMKLIEAM-PFEP-DAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIY 440 (600)
Q Consensus 363 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 440 (600)
+...+..+...|.+.|++++|.+.+++. ...| +...|..+...+...|++++|...++++++++|+++..+..++.++
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 87 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 3566777888888899999999888876 2233 5778888889999999999999999999999999988888888887
Q ss_pred HhcC
Q 007517 441 ASQG 444 (600)
Q Consensus 441 ~~~g 444 (600)
...|
T Consensus 88 ~~~g 91 (91)
T 1na3_A 88 QKQG 91 (91)
T ss_dssp HHHC
T ss_pred HhcC
Confidence 6654
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.74 E-value=0.00011 Score=57.28 Aligned_cols=65 Identities=18% Similarity=0.210 Sum_probs=59.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007517 395 DAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMRKR 459 (600)
Q Consensus 395 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 459 (600)
+...|..+...+...|++++|+..++++++++|+++..|..++.+|...|++++|.+.+++..+.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 57788999999999999999999999999999999999999999999999999999999987653
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.61 E-value=0.00012 Score=58.62 Aligned_cols=76 Identities=16% Similarity=0.155 Sum_probs=58.8
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007517 383 AMKLIEAM-PFEP-DAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMRK 458 (600)
Q Consensus 383 A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 458 (600)
|.+.|++. ...| +...|..+...+...|++++|+..++++++++|+++..+..++.+|...|++++|...+++..+
T Consensus 4 a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44444444 2334 5677888888888888888888888888888888888888888888888888888888887765
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.58 E-value=0.00038 Score=71.34 Aligned_cols=114 Identities=12% Similarity=0.001 Sum_probs=86.3
Q ss_pred HHhhcCCHHHHHHHHHhC---------CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhc-----cCCCCCc---hHH
Q 007517 373 LLGRAGQVEDAMKLIEAM---------PFEPD-AIIWGSLLGACRTHMKLDLAEVAAKKLLQ-----LEPKNAG---PYI 434 (600)
Q Consensus 373 ~~~~~g~~~~A~~~~~~m---------~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~---~~~ 434 (600)
.+...|++++|..++++. +..|+ ..+++.|..+|...|++++|+.+++++++ +.|++|. ++.
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 456789999999988765 22343 45789999999999999999999999886 4666654 477
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHhCCCccCCceeEEEeCCEEEEEEcCCCCCCCChHHHHHHHHHHHHHHH
Q 007517 435 LLSNIYASQGRFHDVAELRKNMRKRNVIKPPGCSWIEVEKKVHMFTGRDCVSHPEHPMIMRMLEKIGGLLR 505 (600)
Q Consensus 435 ~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~~~~~~l~~l~~~~~ 505 (600)
.|+.+|..+|++++|..++++..+.-.. ..|. . ||...++...+.+....++
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~-----------------~lG~-~-Hp~~~~~~~~l~~~~~e~~ 449 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLV-----------------THGP-S-HPITKDLEAMRMQTEMELR 449 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHH-----------------HTCT-T-SHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHH-----------------HhCC-C-ChHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999988652110 1121 1 8988888877766665543
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.56 E-value=3.4e-05 Score=65.03 Aligned_cols=84 Identities=18% Similarity=0.131 Sum_probs=60.9
Q ss_pred hcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCC----------HHHHHHHHHHHhccCCCCCchHHHHHHHHHhc
Q 007517 376 RAGQVEDAMKLIEAM-PFEP-DAIIWGSLLGACRTHMK----------LDLAEVAAKKLLQLEPKNAGPYILLSNIYASQ 443 (600)
Q Consensus 376 ~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~----------~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 443 (600)
|.+++++|.+.+++. ...| +...|..+..++...++ +++|+..++++++++|+++.+|..++++|...
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence 344455555555544 2223 34455555555544443 57999999999999999999999999999987
Q ss_pred C-----------CchHHHHHHHHHHhC
Q 007517 444 G-----------RFHDVAELRKNMRKR 459 (600)
Q Consensus 444 g-----------~~~~a~~~~~~m~~~ 459 (600)
| ++++|.+.|++..+.
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~l 120 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVDE 120 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCcchhhhhccHHHHHHHHHHHHHh
Confidence 5 899999999998874
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.53 E-value=0.00045 Score=69.63 Aligned_cols=116 Identities=13% Similarity=0.107 Sum_probs=85.1
Q ss_pred HHHHhhcCCHHHHHHHHHhC------CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHhc-----cCCCCC---ch
Q 007517 371 VDLLGRAGQVEDAMKLIEAM------PFEPD----AIIWGSLLGACRTHMKLDLAEVAAKKLLQ-----LEPKNA---GP 432 (600)
Q Consensus 371 i~~~~~~g~~~~A~~~~~~m------~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~p~~~---~~ 432 (600)
+.-+.+.|++++|.+++++. -+.|+ ..+++.|..+|...|++++|+.+++++++ +.|++| .+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 44456778888888887655 11222 44688888899999999999999998886 355554 45
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHhCCCccCCceeEEEeCCEEEEEEcCCCCCCCChHHHHHHHHHHHHHHH
Q 007517 433 YILLSNIYASQGRFHDVAELRKNMRKRNVIKPPGCSWIEVEKKVHMFTGRDCVSHPEHPMIMRMLEKIGGLLR 505 (600)
Q Consensus 433 ~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~~~~~~l~~l~~~~~ 505 (600)
+..|+.+|..+|++++|..++++..+--. + ..|. . ||...+++..+.+....|+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~-~----------------~lG~-~-Hp~~~~~~~~l~~~~~e~~ 427 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMR-V----------------THGR-E-HSLIEDLILLLEECDANIR 427 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHH-H----------------HTCT-T-SHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHH-H----------------hcCC-C-ChHHHHHHHHHHHHHHHHh
Confidence 77899999999999999999998865210 0 1121 1 8999998888888877775
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.41 E-value=0.00061 Score=52.06 Aligned_cols=68 Identities=21% Similarity=0.128 Sum_probs=59.8
Q ss_pred CCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 007517 393 EPDAIIWGSLLGACRTHMK---LDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMRKRN 460 (600)
Q Consensus 393 ~p~~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 460 (600)
.+|+..+..+..++...++ .++|..+++++++++|+++.....++..+...|++++|...|+++.+..
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 3567788888888766655 6999999999999999999999999999999999999999999998765
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.40 E-value=0.00017 Score=60.68 Aligned_cols=109 Identities=15% Similarity=0.137 Sum_probs=67.7
Q ss_pred CCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCC----------HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHc
Q 007517 342 GKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQ----------VEDAMKLIEAM-PFEP-DAIIWGSLLGACRTH 409 (600)
Q Consensus 342 g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~----------~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~ 409 (600)
+.+++|.+.++...+.. +.+...|..+..++.+.|+ +++|+..|++. .+.| +...|..+..+|...
T Consensus 16 ~~feeA~~~~~~Ai~l~--P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKSN--PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence 34555555555555431 3345556656666655554 34777777666 4445 355677777777765
Q ss_pred -----------CCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007517 410 -----------MKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMRKR 459 (600)
Q Consensus 410 -----------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 459 (600)
|++++|+..|+++++++|+++ .|...+.. .++|.+++-.....
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~-~y~~al~~------~~ka~el~~~~~~~ 147 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVDEQPDNT-HYLKSLEM------TAKAPQLHAEAYKQ 147 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCH-HHHHHHHH------HHTHHHHHHHHHHS
T ss_pred cccCcchhhhhccHHHHHHHHHHHHHhCCCCH-HHHHHHHH------HHhCHhccCccccc
Confidence 489999999999999999983 44333332 24555655555544
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.33 E-value=0.00051 Score=54.18 Aligned_cols=66 Identities=9% Similarity=-0.014 Sum_probs=61.1
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007517 394 PDAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMRKR 459 (600)
Q Consensus 394 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 459 (600)
++...|..+...+...|++++|...+++++++.|+++..+..++.+|...|++++|.+.+++..+.
T Consensus 2 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 2 SQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 356678889999999999999999999999999999999999999999999999999999998764
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.29 E-value=0.0026 Score=52.75 Aligned_cols=89 Identities=7% Similarity=-0.102 Sum_probs=41.0
Q ss_pred HHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHh---
Q 007517 370 MVDLLGRAGQVEDAMKLIEAMPFEPDAIIWGSLLGACRT----HMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYAS--- 442 (600)
Q Consensus 370 li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~--- 442 (600)
|..+|...+.+++|.+.|++.-...++..+..|...|.. .++.++|...++++.+. .++..+..|+.+|..
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g 108 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKG 108 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSS
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCC
Confidence 333333333334444444333111233344444444443 44555555555555443 233455555555555
Q ss_pred -cCCchHHHHHHHHHHhCC
Q 007517 443 -QGRFHDVAELRKNMRKRN 460 (600)
Q Consensus 443 -~g~~~~a~~~~~~m~~~g 460 (600)
.+++++|.+++++..+.|
T Consensus 109 ~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 109 VVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp SCCCHHHHHHHHHHHHHTT
T ss_pred CCcCHHHHHHHHHHHHHCC
Confidence 555556665555555544
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.22 E-value=0.002 Score=53.44 Aligned_cols=112 Identities=7% Similarity=-0.154 Sum_probs=92.0
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhh----cCCHHH
Q 007517 307 GLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGR----AGQVED 382 (600)
Q Consensus 307 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~ 382 (600)
+++++|+++|++..+.| .|+.. +-..+...+.+++|.++|++..+. .++..+..|..+|.. .+++++
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCccHHH
Confidence 46789999999999887 44444 556677778889999999998874 467888889999988 899999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHhccCC
Q 007517 383 AMKLIEAMPFEPDAIIWGSLLGACRT----HMKLDLAEVAAKKLLQLEP 427 (600)
Q Consensus 383 A~~~~~~m~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p 427 (600)
|.+.|++.-...++..+..|...|.. .++.++|...++++.+...
T Consensus 80 A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 80 AAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 99999988323578888888888888 8999999999999988753
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.14 E-value=0.001 Score=67.00 Aligned_cols=83 Identities=10% Similarity=0.052 Sum_probs=65.5
Q ss_pred hcCCHHHHHHHHHhC---------CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhc-----cCCCCC---chHHHHH
Q 007517 376 RAGQVEDAMKLIEAM---------PFEPD-AIIWGSLLGACRTHMKLDLAEVAAKKLLQ-----LEPKNA---GPYILLS 437 (600)
Q Consensus 376 ~~g~~~~A~~~~~~m---------~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~p~~~---~~~~~l~ 437 (600)
..|++++|..++++. +..|+ ..+++.|..+|...|++++|+.+++++++ +.|++| .+|..|+
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 346778888777654 22343 45688899999999999999999999886 356654 4588899
Q ss_pred HHHHhcCCchHHHHHHHHHHh
Q 007517 438 NIYASQGRFHDVAELRKNMRK 458 (600)
Q Consensus 438 ~~~~~~g~~~~a~~~~~~m~~ 458 (600)
.+|..+|++++|..++++..+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 999999999999999998865
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.14 E-value=0.0012 Score=49.81 Aligned_cols=65 Identities=28% Similarity=0.332 Sum_probs=59.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007517 395 DAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMRKR 459 (600)
Q Consensus 395 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 459 (600)
+...|..+...+...|++++|...++++++..|+++..+..++.+|...|++++|.+.+++..+.
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 35678888899999999999999999999999999999999999999999999999999988764
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.10 E-value=0.0015 Score=51.99 Aligned_cols=81 Identities=16% Similarity=0.089 Sum_probs=56.0
Q ss_pred HHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 007517 347 GREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM-PFEP-DAIIWGSLLGACRTHMKLDLAEVAAKKLLQ 424 (600)
Q Consensus 347 a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 424 (600)
+...|+...+.. +.+...+..+...|.+.|++++|.+.|++. ...| +...|..+..++...|++++|...++++++
T Consensus 4 a~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 4 ITERLEAMLAQG--TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHTTT--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC--CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455555555431 335667777777777888888888777766 2233 466777778888888888888888888887
Q ss_pred cCCCC
Q 007517 425 LEPKN 429 (600)
Q Consensus 425 ~~p~~ 429 (600)
+.|..
T Consensus 82 ~~~~~ 86 (115)
T 2kat_A 82 AAQSR 86 (115)
T ss_dssp HHHHH
T ss_pred hcccc
Confidence 76643
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.06 E-value=0.012 Score=61.77 Aligned_cols=149 Identities=15% Similarity=0.035 Sum_probs=118.4
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHhccCC----------HHHHHHHHHHhHhcCCCCCChHHHHHHHHHH
Q 007517 306 YGLGEKSLKVFHEMFSSGVMPDDVT-LVGVLSACSYTGK----------VKEGREIFESMKSKYLVEPKTEHYACMVDLL 374 (600)
Q Consensus 306 ~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~a~~~~g~----------~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~ 374 (600)
....++|++.++++... .|+..| |+.--.++...|+ ++++.+.++.+.+.. +-+...|..-..++
T Consensus 42 ~~~~eeal~~~~~~l~~--nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~--pK~y~aW~hR~w~l 117 (567)
T 1dce_A 42 GELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN--PKSYGTWHHRCWLL 117 (567)
T ss_dssp TCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC--CCCHHHHHHHHHHH
Confidence 34457889999999984 676654 4444444444555 899999999998853 45688898888899
Q ss_pred hhcC--CHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHhccCCCCCchHHHHHHHHHhc------
Q 007517 375 GRAG--QVEDAMKLIEAM-PF-EPDAIIWGSLLGACRTHM-KLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQ------ 443 (600)
Q Consensus 375 ~~~g--~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~------ 443 (600)
.+.| ++++|.+.++++ .. ..|...|+.-.......| ..++++..++++++.+|.+..+|...+.++...
T Consensus 118 ~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~ 197 (567)
T 1dce_A 118 SRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDS 197 (567)
T ss_dssp HTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCS
T ss_pred HHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccc
Confidence 9999 779999999998 22 347888999888888888 899999999999999999999999988888764
Q ss_pred --------CCchHHHHHHHHHHh
Q 007517 444 --------GRFHDVAELRKNMRK 458 (600)
Q Consensus 444 --------g~~~~a~~~~~~m~~ 458 (600)
+.++++.+.++....
T Consensus 198 ~~~~~~~~~~~~eel~~~~~ai~ 220 (567)
T 1dce_A 198 GPQGRLPENVLLKELELVQNAFF 220 (567)
T ss_dssp SSCCSSCHHHHHHHHHHHHHHHH
T ss_pred cccccccHHHHHHHHHHHHHHHh
Confidence 556788887777664
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=97.00 E-value=0.0013 Score=64.96 Aligned_cols=139 Identities=12% Similarity=0.273 Sum_probs=96.5
Q ss_pred cchHHHHHHHHHhCCChHHHHHHHhhCCCCCcchHHHHHHHHHcCCCHHHHHHHHccCCC--CCcchHHHHHHHHHhcCC
Q 007517 6 VVSWTAMVRGYVEEGMITEAGTLFWQMPEKNVVSWTVMLGGFIRDSRIDDARRLFDMMPE--KDVVAQTNMVLGYCQDGR 83 (600)
Q Consensus 6 ~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~li~~~~~~g~ 83 (600)
..+|+.|..+..+.+...+|++.|-+. .|+..|..++....+.|.+++-.+.+....+ +++..-+.|+-+|++.|+
T Consensus 54 p~VWs~LgkAqL~~~~v~eAIdsyIkA--~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~IDteLi~ayAk~~r 131 (624)
T 3lvg_A 54 PAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNR 131 (624)
T ss_dssp CCCSSSHHHHTTTSSSCTTTTTSSCCC--SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTTTTHHHHHHHHTSCS
T ss_pred ccHHHHHHHHHHccCchHHHHHHHHhC--CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccHHHHHHHHHhhCc
Confidence 456888888888888888888776544 4666778888888888988888888876663 567777888888988887
Q ss_pred hHHHHHHHhhCCCCCcccHHHHHHHHHhCCChHHHHHHHhhcCC------------------------CCcchHHHHHHH
Q 007517 84 VDEGREIFDEMPKKNVISWTTMISGYVNNNRIDVARKLFEVMPE------------------------KNEVSWTAMLMG 139 (600)
Q Consensus 84 ~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~------------------------p~~~t~~~ll~~ 139 (600)
+.+-.+++. .||+.-...+.+-|...|.++.|.-+|..+.. .++.||-.+-.+
T Consensus 132 L~elEefl~---~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~A 208 (624)
T 3lvg_A 132 LAELEEFIN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFA 208 (624)
T ss_dssp SSTTTSTTS---CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHH
T ss_pred HHHHHHHHc---CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHH
Confidence 666443322 35555556666666666666666665554432 355677777777
Q ss_pred HhcCCChHHH
Q 007517 140 YTQCGRIQDA 149 (600)
Q Consensus 140 ~~~~g~~~~a 149 (600)
|...+.+..|
T Consensus 209 Cvd~~EfrLA 218 (624)
T 3lvg_A 209 CVDGKEFRLA 218 (624)
T ss_dssp HHHSCTTTTT
T ss_pred HhCchHHHHH
Confidence 7776665544
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.99 E-value=0.0056 Score=61.62 Aligned_cols=101 Identities=10% Similarity=-0.052 Sum_probs=74.5
Q ss_pred HHHHhccCCHHHHHHHHHHhHhcC--CCCCC----hHHHHHHHHHHhhcCCHHHHHHHHHhC---------CCCCC-HHH
Q 007517 335 LSACSYTGKVKEGREIFESMKSKY--LVEPK----TEHYACMVDLLGRAGQVEDAMKLIEAM---------PFEPD-AII 398 (600)
Q Consensus 335 l~a~~~~g~~~~a~~~~~~~~~~~--~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m---------~~~p~-~~~ 398 (600)
+..+...|++++|..++++..+.. -+.|+ ..+++.|..+|...|++++|+.++++. +..|+ ..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 444556778888888887776432 12222 567888888999999999998888765 33454 446
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhc-----cCCCCCchHHH
Q 007517 399 WGSLLGACRTHMKLDLAEVAAKKLLQ-----LEPKNAGPYIL 435 (600)
Q Consensus 399 ~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~~~~~ 435 (600)
++.|...|...|++++|+.+++++++ +.|++|.+-..
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~ 415 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDL 415 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Confidence 88999999999999999999999887 47887655443
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.98 E-value=0.0033 Score=63.22 Aligned_cols=94 Identities=17% Similarity=0.032 Sum_probs=70.9
Q ss_pred ccCCHHHHHHHHHHhHhcC--CCCCC----hHHHHHHHHHHhhcCCHHHHHHHHHhC---------CCCCC-HHHHHHHH
Q 007517 340 YTGKVKEGREIFESMKSKY--LVEPK----TEHYACMVDLLGRAGQVEDAMKLIEAM---------PFEPD-AIIWGSLL 403 (600)
Q Consensus 340 ~~g~~~~a~~~~~~~~~~~--~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m---------~~~p~-~~~~~~ll 403 (600)
..|++++|..++++..+.. -+.|+ ..+++.|..+|...|++++|..++++. +..|+ ..+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 4577888888887765421 12222 567888999999999999999988876 33455 44689999
Q ss_pred HHHHHcCCHHHHHHHHHHHhc-----cCCCCCchH
Q 007517 404 GACRTHMKLDLAEVAAKKLLQ-----LEPKNAGPY 433 (600)
Q Consensus 404 ~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~~~ 433 (600)
..|...|++++|+.+++++++ +.|++|.+-
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~ 424 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYIS 424 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHH
Confidence 999999999999999999887 478876443
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.93 E-value=0.0024 Score=49.17 Aligned_cols=64 Identities=19% Similarity=0.214 Sum_probs=38.3
Q ss_pred HHHHHhhcCCHHHHHHHHHhC-CCCC-CHH-HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchH
Q 007517 370 MVDLLGRAGQVEDAMKLIEAM-PFEP-DAI-IWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPY 433 (600)
Q Consensus 370 li~~~~~~g~~~~A~~~~~~m-~~~p-~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 433 (600)
....+.+.|++++|.+.+++. ...| +.. .|..+..++...|++++|...++++++++|+++..+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 344556666666666666655 2223 344 566666666666666666666666666666665444
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.89 E-value=0.01 Score=57.34 Aligned_cols=137 Identities=9% Similarity=-0.015 Sum_probs=69.4
Q ss_pred CCHHHHHHHHHHHH--hcC---ChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhc----cC----CHHHHHHHHHHhHh
Q 007517 291 KDIVMWNSIISGYA--QYG---LGEKSLKVFHEMFSSGVMPDD-VTLVGVLSACSY----TG----KVKEGREIFESMKS 356 (600)
Q Consensus 291 ~~~~~~~~li~~~~--~~g---~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~----~g----~~~~a~~~~~~~~~ 356 (600)
.+..+|...+.+.. ..+ ...+|+.+|++..+. .|+. ..+..+..++.. .+ ......+.+.....
T Consensus 192 ~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a 269 (372)
T 3ly7_A 192 HRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVT 269 (372)
T ss_dssp SSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHh
Confidence 45666666665543 222 347888888888874 6764 334333333320 00 00111111111111
Q ss_pred cCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC
Q 007517 357 KYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM-PFEPDAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKN 429 (600)
Q Consensus 357 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 429 (600)
....+.+..+|..+.-.+...|++++|...++++ ...|+...|..+...+...|++++|...+++++.++|..
T Consensus 270 ~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~ 343 (372)
T 3ly7_A 270 LPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGA 343 (372)
T ss_dssp CGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSH
T ss_pred cccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 0112344555555555555556666666666655 334555555555555666666666666666666666654
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.86 E-value=0.0053 Score=51.02 Aligned_cols=65 Identities=6% Similarity=-0.077 Sum_probs=42.9
Q ss_pred CCHHHHHHHHHHHHHcC---CHHHHHHHHHHHhccC-C-CCCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007517 394 PDAIIWGSLLGACRTHM---KLDLAEVAAKKLLQLE-P-KNAGPYILLSNIYASQGRFHDVAELRKNMRK 458 (600)
Q Consensus 394 p~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 458 (600)
++..+...+..++.+.+ +.++|..+++.+.+.+ | ++...+..|+-+|.+.|++++|+++++.+.+
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ 99 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 99 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 45666666666666665 4557777777777666 5 3345666677777777777777777777665
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.81 E-value=0.0054 Score=47.05 Aligned_cols=87 Identities=10% Similarity=0.097 Sum_probs=60.0
Q ss_pred HHHHHhccCCHHHHHHHHHHhHhcCCCCCChH-HHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcC
Q 007517 334 VLSACSYTGKVKEGREIFESMKSKYLVEPKTE-HYACMVDLLGRAGQVEDAMKLIEAM-PFEPD-AIIWGSLLGACRTHM 410 (600)
Q Consensus 334 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g 410 (600)
....+...|++++|.+.|+...+.. +.+.. .+..+..+|.+.|++++|.+.|++. ...|+ ...|.. +
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~ 75 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTE--PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------K 75 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC--SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------H
Confidence 3456677888999999988887742 33566 7888888888899999999888876 33343 222211 4
Q ss_pred CHHHHHHHHHHHhccCCCCC
Q 007517 411 KLDLAEVAAKKLLQLEPKNA 430 (600)
Q Consensus 411 ~~~~a~~~~~~~~~~~p~~~ 430 (600)
.+.++...+++....+|+++
T Consensus 76 ~~~~a~~~~~~~~~~~p~~~ 95 (99)
T 2kc7_A 76 MVMDILNFYNKDMYNQLEHH 95 (99)
T ss_dssp HHHHHHHHHCCTTHHHHCCS
T ss_pred HHHHHHHHHHHHhccCcccc
Confidence 56667777777776666653
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=96.78 E-value=0.099 Score=41.74 Aligned_cols=140 Identities=11% Similarity=0.045 Sum_probs=97.0
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHH
Q 007517 304 AQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDA 383 (600)
Q Consensus 304 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 383 (600)
.-.|..++..++..+.... .+..-++.++--....-+-+-..+.++.+-+.+.+ ..+|++...
T Consensus 18 ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDi--------------s~C~NlKrV 80 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDL--------------DKCQNLKSV 80 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCG--------------GGCSCTHHH
T ss_pred HHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhhcCc--------------HhhhcHHHH
Confidence 3456666777777766542 23344555554444444555555555555443322 356777776
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCCc
Q 007517 384 MKLIEAMPFEPDAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMRKRNVI 462 (600)
Q Consensus 384 ~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 462 (600)
..-+-.++ .+....+.-++....+|..+.-..+...++.-+|.+|....-++++|.+.|+..+|.+++++.-++|++
T Consensus 81 i~C~~~~n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 81 VECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhc--chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 66666664 344555667788889999999999999977777777888999999999999999999999999999975
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=96.70 E-value=0.0054 Score=47.43 Aligned_cols=63 Identities=8% Similarity=0.036 Sum_probs=31.2
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhH
Q 007517 292 DIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMK 355 (600)
Q Consensus 292 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 355 (600)
+...|..+...|.+.|++++|+..|++..+.. +.+...+..+..++...|++++|.+.|++..
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34445555555555555555555555555431 1122344444555555555555555555443
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.63 E-value=0.16 Score=55.86 Aligned_cols=152 Identities=12% Similarity=0.075 Sum_probs=91.1
Q ss_pred HHHHhCCChHHHHH-HHhhcCCCCcchHHHHHHHHhcCCChHHHHHHHhhCCCCCccchhHHHHHHHhcCCHHHHHHHHH
Q 007517 107 SGYVNNNRIDVARK-LFEVMPEKNEVSWTAMLMGYTQCGRIQDAWELFKAMPMKSVVASNSMILGLGQNGEVQKARVVFD 185 (600)
Q Consensus 107 ~~~~~~g~~~~A~~-~~~~m~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~ 185 (600)
......+++++|.+ ++..+. +......++..+.+.|..+.|.++.+. . ..-.......|++++|.++.+
T Consensus 607 ~~~~~~~~~~~a~~~~l~~i~--~~~~~~~~~~~l~~~~~~~~a~~~~~~-----~---~~~f~~~l~~~~~~~A~~~~~ 676 (814)
T 3mkq_A 607 QTLTLRGEIEEAIENVLPNVE--GKDSLTKIARFLEGQEYYEEALNISPD-----Q---DQKFELALKVGQLTLARDLLT 676 (814)
T ss_dssp HHHHHTTCHHHHHHHTGGGCC--CHHHHHHHHHHHHHTTCHHHHHHHCCC-----H---HHHHHHHHHHTCHHHHHHHHT
T ss_pred hHHHHhCCHHHHHHHHHhcCC--chHHHHHHHHHHHhCCChHHheecCCC-----c---chheehhhhcCCHHHHHHHHH
Confidence 33445677777776 443332 122336666667777777777665421 1 122445667888888888877
Q ss_pred hcccCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCchhHhhHHHHHhhhcchHHHHHHHHHHHHcCCCCchhhH
Q 007517 186 QMREKDDATWSGMIKVYERKGYELEVIDLFTLMQKEGVRVNFPSLISVLSVCASLASLDHGRQVHAQLVRCQFDVDVYVA 265 (600)
Q Consensus 186 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 265 (600)
.+. +...|..+...+.+.|+++.|...|.++.. |..+...+...++.+....+-......| -+
T Consensus 677 ~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~------~~ 739 (814)
T 3mkq_A 677 DES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTG------KF 739 (814)
T ss_dssp TCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTT------CH
T ss_pred hhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcC------ch
Confidence 664 567888888888888888888888887643 2233333444555555544444444433 22
Q ss_pred HHHHHHHHHcCCHHHHHhhh
Q 007517 266 SVLITMYIKCGELVKGKLIF 285 (600)
Q Consensus 266 ~~li~~y~~~g~~~~A~~~~ 285 (600)
+....+|.++|++++|.+++
T Consensus 740 ~~A~~~~~~~g~~~~a~~~~ 759 (814)
T 3mkq_A 740 NLAFNAYWIAGDIQGAKDLL 759 (814)
T ss_dssp HHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHH
Confidence 33444566666666665543
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=96.50 E-value=8.1e-05 Score=73.17 Aligned_cols=259 Identities=12% Similarity=0.076 Sum_probs=180.6
Q ss_pred CcchHHHHHHHHHcCCCHHHHHHHHccCCCCCcchHHHHHHHHHhcCChHHHHHHHhhCCC--CCcccHHHHHHHHHhCC
Q 007517 36 NVVSWTVMLGGFIRDSRIDDARRLFDMMPEKDVVAQTNMVLGYCQDGRVDEGREIFDEMPK--KNVISWTTMISGYVNNN 113 (600)
Q Consensus 36 ~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~li~~~~~~g 113 (600)
.+.+|+.|..+....|++.+|+.-|-+ ..|+..|..+|....+.|.+++-.+.+....+ ++...=+.|+-+|++.+
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIk--A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~IDteLi~ayAk~~ 130 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIK--ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTN 130 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCC--CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTTTTHHHHHHHHTSC
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHh--CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccHHHHHHHHHhhC
Confidence 456788888888888888888776533 45777788889988899999988888776554 56666778888999988
Q ss_pred ChHHHHHHHhhcCC-CCcchHHHHHHHHhcCCChHHHHHHHhhCCCCCccchhHHHHHHHhcCCHHHHHHHHHhcccCCh
Q 007517 114 RIDVARKLFEVMPE-KNEVSWTAMLMGYTQCGRIQDAWELFKAMPMKSVVASNSMILGLGQNGEVQKARVVFDQMREKDD 192 (600)
Q Consensus 114 ~~~~A~~~~~~m~~-p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~ 192 (600)
+..+-. +... ||..-...+.+-|...|.++.|+-+|..+. -|..|...+.+.|++..|.+.-++ ..++
T Consensus 131 rL~elE----efl~~~N~A~iq~VGDrcf~e~lYeAAKilys~is-----N~akLAstLV~L~~yq~AVdaArK--Ans~ 199 (624)
T 3lvg_A 131 RLAELE----EFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS-----NFGRLASTLVHLGEYQAAVDGARK--ANST 199 (624)
T ss_dssp SSSTTT----STTSCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSC-----CCTTTSSSSSSCSGGGSSTTTTTT--CCSS
T ss_pred cHHHHH----HHHcCCCcccHHHHHHHHHHccCHHHHHHHHHhCc-----cHHHHHHHHHHHHHHHHHHHHHHh--cCCh
Confidence 865422 2222 888888888888888888888877775543 444555556667776666533222 2478
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCchhHhhHHHHHhhhcchHHHHHHHHHHHHcCCCCchhhHHHHHHHH
Q 007517 193 ATWSGMIKVYERKGYELEVIDLFTLMQKEGVRVNFPSLISVLSVCASLASLDHGRQVHAQLVRCQFDVDVYVASVLITMY 272 (600)
Q Consensus 193 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y 272 (600)
.+|-.+-.+|...+.+.-|.-.--.+. ....-+..++..|-..|.+++-..+++.-.... ......++-|.-.|
T Consensus 200 ktWKeV~~ACvd~~EfrLAqicGLniI-----vhadeL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaILY 273 (624)
T 3lvg_A 200 RTWKEVCFACVDGKEFRLAQMCGLHIV-----VHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILY 273 (624)
T ss_dssp CSHHHHTHHHHHSCTTTTTTHHHHHHH-----CCSSCCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHhCchHHHHHHHhcchhc-----ccHHHHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHHH
Confidence 899999999999999887754332222 223344556667788888888888877766322 45778888898888
Q ss_pred HHcCCHHHHH---hhhh-hcCCC-------CHHHHHHHHHHHHhcCChHHHHH
Q 007517 273 IKCGELVKGK---LIFD-NFASK-------DIVMWNSIISGYAQYGLGEKSLK 314 (600)
Q Consensus 273 ~~~g~~~~A~---~~~~-~~~~~-------~~~~~~~li~~~~~~g~~~~A~~ 314 (600)
+|- +.++-. ++|- ++.-| ....|.-++-.|....+++.|..
T Consensus 274 sKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 274 SKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp HSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred Hhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 875 333333 3332 22222 44679999999998888887754
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.44 E-value=0.13 Score=56.52 Aligned_cols=48 Identities=13% Similarity=0.195 Sum_probs=30.6
Q ss_pred HHHHcCCHHHHHhhhhhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 007517 271 MYIKCGELVKGKLIFDNFASKDIVMWNSIISGYAQYGLGEKSLKVFHEMF 320 (600)
Q Consensus 271 ~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 320 (600)
....+|+++.|.++.+.+. +...|..+...+.+.|+++.|.+.|.++.
T Consensus 661 ~~l~~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~ 708 (814)
T 3mkq_A 661 LALKVGQLTLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAH 708 (814)
T ss_dssp HHHHHTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred hhhhcCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence 3445666666666655543 44567777777777777777777776653
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.30 E-value=0.039 Score=53.32 Aligned_cols=133 Identities=17% Similarity=0.150 Sum_probs=92.8
Q ss_pred CCCCHHHHHHHHHHHhc--c---CCHHHHHHHHHHhHhcCCCCCC-hHHHHHHHHHHh----hcC-------CHHHHHHH
Q 007517 324 VMPDDVTLVGVLSACSY--T---GKVKEGREIFESMKSKYLVEPK-TEHYACMVDLLG----RAG-------QVEDAMKL 386 (600)
Q Consensus 324 ~~p~~~t~~~ll~a~~~--~---g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~----~~g-------~~~~A~~~ 386 (600)
.+.+...|...+.+... . ....+|..+|++..+. .|+ ...|..+..+|. ..+ .+..|.+.
T Consensus 190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l---DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a 266 (372)
T 3ly7_A 190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS---SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDN 266 (372)
T ss_dssp SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHH
Confidence 35566677777766432 2 3468899999999874 565 445554443332 111 11223332
Q ss_pred HHhCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 007517 387 IEAMP-FEPDAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMRKRN 460 (600)
Q Consensus 387 ~~~m~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 460 (600)
...+. ...++.+|..+...+...|+++.|...++++++++|+ ...|..++.++.-.|++++|.+.+++....+
T Consensus 267 ~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~ 340 (372)
T 3ly7_A 267 IVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLR 340 (372)
T ss_dssp HHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 23332 2457888888887788889999999999999999975 5778899999999999999999999887643
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=96.19 E-value=0.014 Score=53.96 Aligned_cols=87 Identities=14% Similarity=0.131 Sum_probs=69.9
Q ss_pred HHHHHHHHHhC-CCCCC---HHHHHHHHHHHHH-----cCCHHHHHHHHHHHhccCCCC-CchHHHHHHHHHhc-CCchH
Q 007517 380 VEDAMKLIEAM-PFEPD---AIIWGSLLGACRT-----HMKLDLAEVAAKKLLQLEPKN-AGPYILLSNIYASQ-GRFHD 448 (600)
Q Consensus 380 ~~~A~~~~~~m-~~~p~---~~~~~~ll~~~~~-----~g~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~-g~~~~ 448 (600)
..+|...+++. .+.|+ ...|..|...|.+ .|+.++|.+.|+++++++|+. +.+++..+..++.. |+.++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 45566666655 44565 5678888888888 499999999999999999975 89999999999884 99999
Q ss_pred HHHHHHHHHhCCCccCCc
Q 007517 449 VAELRKNMRKRNVIKPPG 466 (600)
Q Consensus 449 a~~~~~~m~~~g~~~~~~ 466 (600)
+.+++++.........|+
T Consensus 259 a~~~L~kAL~a~p~~~P~ 276 (301)
T 3u64_A 259 FDEALDRALAIDPESVPH 276 (301)
T ss_dssp HHHHHHHHHHCCGGGCSS
T ss_pred HHHHHHHHHcCCCCCCCC
Confidence 999999998866543344
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=96.09 E-value=0.034 Score=42.14 Aligned_cols=78 Identities=13% Similarity=0.071 Sum_probs=58.5
Q ss_pred CCChHHHHHHHHHHhhcCC---HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHH
Q 007517 361 EPKTEHYACMVDLLGRAGQ---VEDAMKLIEAM-PFEP-DAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYIL 435 (600)
Q Consensus 361 ~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 435 (600)
++++..+..+..++...++ .++|..++++. ...| ++..+..+...+.+.|++++|...++++++.+|++ .....
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~-~~~~~ 81 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN-LDRVT 81 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT-CCHHH
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-ccHHH
Confidence 4567788888888765554 68898888877 3345 46777778888999999999999999999999884 44444
Q ss_pred HHHH
Q 007517 436 LSNI 439 (600)
Q Consensus 436 l~~~ 439 (600)
+...
T Consensus 82 i~~~ 85 (93)
T 3bee_A 82 IIES 85 (93)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=95.93 E-value=0.046 Score=45.38 Aligned_cols=85 Identities=19% Similarity=0.080 Sum_probs=58.1
Q ss_pred HHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcC---CHHHHHHHHHhC-CCC-C--CHHHHHHHHHHHHHcCCHHHHH
Q 007517 344 VKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAG---QVEDAMKLIEAM-PFE-P--DAIIWGSLLGACRTHMKLDLAE 416 (600)
Q Consensus 344 ~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~m-~~~-p--~~~~~~~ll~~~~~~g~~~~a~ 416 (600)
+..+++-|.+.... + +++..+...+..++.+.+ +++++..+++.. ... | +...+-.|.-+|.+.|++++|.
T Consensus 14 l~~~~~~y~~e~~~-~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAA-G-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHT-T-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHcc-C-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHH
Confidence 34445555544442 2 356666666777777766 455777766665 212 4 2445667778889999999999
Q ss_pred HHHHHHhccCCCCC
Q 007517 417 VAAKKLLQLEPKNA 430 (600)
Q Consensus 417 ~~~~~~~~~~p~~~ 430 (600)
+.++++++.+|++.
T Consensus 92 ~y~~~lL~ieP~n~ 105 (152)
T 1pc2_A 92 KYVRGLLQTEPQNN 105 (152)
T ss_dssp HHHHHHHHHCTTCH
T ss_pred HHHHHHHhcCCCCH
Confidence 99999999999884
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.85 E-value=0.3 Score=41.56 Aligned_cols=129 Identities=11% Similarity=0.085 Sum_probs=87.0
Q ss_pred HHHHHcCCHHHHHhhhhhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHH
Q 007517 270 TMYIKCGELVKGKLIFDNFASKDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGRE 349 (600)
Q Consensus 270 ~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 349 (600)
+....+|+++.|.++.+.+ .+...|..|......+|+++-|.+.|.+... |..+.-.|...|+.+.-.+
T Consensus 13 ~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHH
Confidence 4456789999998887766 4677899999999999999999999987642 3334444555677766665
Q ss_pred HHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 007517 350 IFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAMPFEPDAIIWGSLLGACRTHMKLDLAEVAAKKL 422 (600)
Q Consensus 350 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 422 (600)
+-+....+ | -++.-...+.-.|+++++.+++.+.+.-|....+ ...+|..+.|.++.+.+
T Consensus 82 la~iA~~~-g------~~n~af~~~l~lGdv~~~i~lL~~~~r~~eA~~~------A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 82 MQNIAQTR-E------DFGSMLLNTFYNNSTKERSSIFAEGGSLPLAYAV------AKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHT-T------CHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHH------HHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHC-c------cHHHHHHHHHHcCCHHHHHHHHHHCCChHHHHHH------HHHcCcHHHHHHHHHHh
Confidence 54444332 2 2445556667789999999988887633322221 23467777777776655
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=95.83 E-value=0.05 Score=42.21 Aligned_cols=73 Identities=18% Similarity=0.069 Sum_probs=54.0
Q ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHhC-----C----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchH
Q 007517 363 KTEHYACMVDLLGRAGQVEDAMKLIEAM-----P----FEPDAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPY 433 (600)
Q Consensus 363 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-----~----~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 433 (600)
+..-+..|...+.+.|+++.|...++.. + -.+...++..|..++.+.|+++.|...++++++++|+++.+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~ 83 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN 83 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence 3444556677777777777777776654 1 023467788999999999999999999999999999986553
Q ss_pred HH
Q 007517 434 IL 435 (600)
Q Consensus 434 ~~ 435 (600)
..
T Consensus 84 ~n 85 (104)
T 2v5f_A 84 GN 85 (104)
T ss_dssp HH
T ss_pred hh
Confidence 33
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=95.56 E-value=0.079 Score=42.27 Aligned_cols=85 Identities=20% Similarity=0.076 Sum_probs=41.6
Q ss_pred CHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHH---HHHHHHhC-CCC-C--CHHHHHHHHHHHHHcCCHHHH
Q 007517 343 KVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVED---AMKLIEAM-PFE-P--DAIIWGSLLGACRTHMKLDLA 415 (600)
Q Consensus 343 ~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~---A~~~~~~m-~~~-p--~~~~~~~ll~~~~~~g~~~~a 415 (600)
.+..+++-+...... + .|+..+--.+..++.+..+..+ +..+++.. ... | .....-.|.-++.+.|+++.|
T Consensus 16 ~l~~~~~~y~~e~~~-~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A 93 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAA-G-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKA 93 (126)
T ss_dssp HHHHHHHHHHHHHHH-S-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhcc-C-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHH
Confidence 344444444444332 2 2555555555566666555444 55555544 111 2 112233344455555666666
Q ss_pred HHHHHHHhccCCCC
Q 007517 416 EVAAKKLLQLEPKN 429 (600)
Q Consensus 416 ~~~~~~~~~~~p~~ 429 (600)
.+.++.+++.+|++
T Consensus 94 ~~~~~~lL~~eP~n 107 (126)
T 1nzn_A 94 LKYVRGLLQTEPQN 107 (126)
T ss_dssp HHHHHHHHHHCTTC
T ss_pred HHHHHHHHHhCCCC
Confidence 66666666666655
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.27 E-value=1.1 Score=38.08 Aligned_cols=103 Identities=9% Similarity=0.020 Sum_probs=62.1
Q ss_pred HHHHhcCCHHHHHHHHHhcccCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCchhHhhHHHHHhhhcchHHHHH
Q 007517 169 LGLGQNGEVQKARVVFDQMREKDDATWSGMIKVYERKGYELEVIDLFTLMQKEGVRVNFPSLISVLSVCASLASLDHGRQ 248 (600)
Q Consensus 169 ~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~ 248 (600)
....++|+++.|.++.+++ .+...|..+.......|+++-|...|.+... +..+.-.+...|+.+.-..
T Consensus 13 ~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHH
Confidence 4456778888888877765 3567788888888888888888888876532 2333344445566555554
Q ss_pred HHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHhhhhhc
Q 007517 249 VHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNF 288 (600)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~ 288 (600)
+-+.....| -++.....+.-.|+++++.++|.+.
T Consensus 82 la~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 82 MQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHC
Confidence 444444433 1233334444556666665555443
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=95.21 E-value=3.6 Score=43.04 Aligned_cols=115 Identities=10% Similarity=-0.027 Sum_probs=69.4
Q ss_pred CChHHHHHHHHHHHHCC-CCCCHH--HHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHH
Q 007517 307 GLGEKSLKVFHEMFSSG-VMPDDV--TLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDA 383 (600)
Q Consensus 307 g~~~~A~~~~~~m~~~g-~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 383 (600)
.+.+.|..+|......+ +.+... ....+.......+...++...+...... .++.....-.+..-.+.|+++.|
T Consensus 228 ~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~e~~~r~Alr~~d~~~a 304 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---SQSTSLIERRVRMALGTGDRRGL 304 (618)
T ss_dssp HCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---CCCHHHHHHHHHHHHHHTCHHHH
T ss_pred cCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc---CCChHHHHHHHHHHHHCCCHHHH
Confidence 37789999998886543 322222 1222333334445355666666665432 23433444445555678999999
Q ss_pred HHHHHhCCCCC-C-HHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 007517 384 MKLIEAMPFEP-D-AIIWGSLLGACRTHMKLDLAEVAAKKLLQ 424 (600)
Q Consensus 384 ~~~~~~m~~~p-~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 424 (600)
.+.|+.|+..+ + ..-.-=+..+....|+.++|..+++++.+
T Consensus 305 ~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 305 NTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 99999995332 2 22122234566778999999999998875
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} | Back alignment and structure |
|---|
Probab=94.61 E-value=1.5 Score=38.35 Aligned_cols=155 Identities=8% Similarity=0.097 Sum_probs=71.3
Q ss_pred CCCcchHHHHHHHHHhcCChHHHHHHHhhCCCCCcccHHHHHHHHHhCCChHHHHHHHhhcCCCCcchHHHHHHHHhcCC
Q 007517 65 EKDVVAQTNMVLGYCQDGRVDEGREIFDEMPKKNVISWTTMISGYVNNNRIDVARKLFEVMPEKNEVSWTAMLMGYTQCG 144 (600)
Q Consensus 65 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~p~~~t~~~ll~~~~~~g 144 (600)
.+|.......+..+.+.|..+....+.+.+..+|...-...+.++.+.|..+..-.+...+..++...-...+.++...+
T Consensus 25 ~~~~~vr~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~ 104 (201)
T 3ltj_A 25 DDSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQSAAVALGQIG 104 (201)
T ss_dssp CSCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 33443333444444444443333333333333444333334444444444332222223232355555555555555555
Q ss_pred ChHHHHHHHhhCCCCCccchhHHHHHHHhcCCHHHHHHHHHhcccCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Q 007517 145 RIQDAWELFKAMPMKSVVASNSMILGLGQNGEVQKARVVFDQMREKDDATWSGMIKVYERKGYELEVIDLFTLMQK 220 (600)
Q Consensus 145 ~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 220 (600)
+.+....+...+..++..+....+.++.+.|..+....+.+.+.+++...-...+.++.+.|. .++...+..+.+
T Consensus 105 ~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~-~~~~~~L~~~l~ 179 (201)
T 3ltj_A 105 DERAVEPLIKALKDEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGG-ERVRAAMEKLAE 179 (201)
T ss_dssp CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHTCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-HHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-hhHHHHHHHHHh
Confidence 544333444433355555555556666666554433344444444555555555555555554 345555555554
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} | Back alignment and structure |
|---|
Probab=94.50 E-value=1.4 Score=38.74 Aligned_cols=171 Identities=8% Similarity=0.061 Sum_probs=76.7
Q ss_pred CCCcchHHHHHHHHHhcCChHHHHHHHhhCCCCCcccHHHHHHHHHhCCChHHHHHHHhhcCCCCcchHHHHHHHHhcCC
Q 007517 65 EKDVVAQTNMVLGYCQDGRVDEGREIFDEMPKKNVISWTTMISGYVNNNRIDVARKLFEVMPEKNEVSWTAMLMGYTQCG 144 (600)
Q Consensus 65 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~p~~~t~~~ll~~~~~~g 144 (600)
.+|...-...+..+.+.|..+....+.+.+..+|...-...+.++.+.+..+..-.+...+..+|...-...+.++...+
T Consensus 30 ~~~~~vR~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~ 109 (211)
T 3ltm_A 30 DDSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQSAAVALGQIG 109 (211)
T ss_dssp CSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHhCCccHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 33333333344444444443333333333334444333334444444444322222222222255555555555555555
Q ss_pred ChHHHHHHHhhCCCCCccchhHHHHHHHhcCCHHHHHHHHHhcccCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCc
Q 007517 145 RIQDAWELFKAMPMKSVVASNSMILGLGQNGEVQKARVVFDQMREKDDATWSGMIKVYERKGYELEVIDLFTLMQKEGVR 224 (600)
Q Consensus 145 ~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 224 (600)
+.+....+...+..++..+....+.++.+.|..+....+.+.+.+++...-...+.++.+.+. .++...+..+.+.
T Consensus 110 ~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-~~~~~~L~~~l~d--- 185 (211)
T 3ltm_A 110 DERAVEPLIKALKDEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGG-ERVRAAMEKLAET--- 185 (211)
T ss_dssp CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-HHHHHHHHHHHHH---
T ss_pred cHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-hhHHHHHHHHHhC---
Confidence 544333333333355555555556666665554433334444444555555555555555554 3455555555543
Q ss_pred cCchhHhhHHHHHhh
Q 007517 225 VNFPSLISVLSVCAS 239 (600)
Q Consensus 225 p~~~t~~~ll~~~~~ 239 (600)
++...-...+.++..
T Consensus 186 ~~~~vr~~A~~aL~~ 200 (211)
T 3ltm_A 186 GTGFARKVAVNYLET 200 (211)
T ss_dssp CCHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHh
Confidence 333333344444433
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=94.50 E-value=1.1 Score=36.38 Aligned_cols=66 Identities=5% Similarity=-0.116 Sum_probs=38.6
Q ss_pred CCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHhccCCCC-CchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007517 393 EPDAIIWGSLLGACRTHMK---LDLAEVAAKKLLQLEPKN-AGPYILLSNIYASQGRFHDVAELRKNMRK 458 (600)
Q Consensus 393 ~p~~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 458 (600)
.|+..+--.+..++.+..+ ..+++.+++.+....|.. -.....|+-++.+.|++++|+++.+.+.+
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~ 105 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 105 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 3455554445555555443 345666666666655532 23445566677777777777777776665
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=94.42 E-value=0.065 Score=49.60 Aligned_cols=81 Identities=14% Similarity=0.133 Sum_probs=49.4
Q ss_pred HHHHHHHHHhHhcCCCCCC---hHHHHHHHHHHhhc-----CCHHHHHHHHHhC-CCCCC--HHHHHHHHHHHHH-cCCH
Q 007517 345 KEGREIFESMKSKYLVEPK---TEHYACMVDLLGRA-----GQVEDAMKLIEAM-PFEPD--AIIWGSLLGACRT-HMKL 412 (600)
Q Consensus 345 ~~a~~~~~~~~~~~~~~p~---~~~~~~li~~~~~~-----g~~~~A~~~~~~m-~~~p~--~~~~~~ll~~~~~-~g~~ 412 (600)
..|...+++..+ +.|+ -..|..|...|.+. |+.++|.+.|++. .+.|+ ..++......++. .|+.
T Consensus 180 ~~A~a~lerAle---LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 180 HAAVMMLERACD---LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHH---HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHH---hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 444444444443 3454 34566666666663 7777777777766 44452 5555556666655 3777
Q ss_pred HHHHHHHHHHhccCCC
Q 007517 413 DLAEVAAKKLLQLEPK 428 (600)
Q Consensus 413 ~~a~~~~~~~~~~~p~ 428 (600)
+.+.+.+++++...|.
T Consensus 257 ~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 257 AGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHHcCCCC
Confidence 7777777777776665
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} | Back alignment and structure |
|---|
Probab=94.07 E-value=2.9 Score=36.75 Aligned_cols=179 Identities=11% Similarity=0.062 Sum_probs=93.3
Q ss_pred HHHHhhCCCCCcccHHHHHHHHHhCCChHHHHHHHhhcCCCCcchHHHHHHHHhcCCChHHHHHHHhhCCCCCccchhHH
Q 007517 88 REIFDEMPKKNVISWTTMISGYVNNNRIDVARKLFEVMPEKNEVSWTAMLMGYTQCGRIQDAWELFKAMPMKSVVASNSM 167 (600)
Q Consensus 88 ~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l 167 (600)
..+.+.+..+|...-...+..+.+.|..+..-.+.+.+..+|...-...+.++...++.+....+...+..++..+....
T Consensus 22 ~~L~~~L~~~~~~vR~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~~~~~vr~~a 101 (211)
T 3ltm_A 22 EMYIKNLQDDSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQSA 101 (211)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhCCccHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHHHHHH
Confidence 33444444455555445555555556543333333333336665555666666666655444444444446666666666
Q ss_pred HHHHHhcCCHHHHHHHHHhcccCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCchhHhhHHHHHhhhcchHHHH
Q 007517 168 ILGLGQNGEVQKARVVFDQMREKDDATWSGMIKVYERKGYELEVIDLFTLMQKEGVRVNFPSLISVLSVCASLASLDHGR 247 (600)
Q Consensus 168 i~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~ 247 (600)
+.++.+.|+.+....+.+.+.+++...-...+.++.+.|..+ ++..+..+.+ .++...-...+.++...+. ..+.
T Consensus 102 ~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~-~~~~ 176 (211)
T 3ltm_A 102 AVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDER-AVEPLIKALK---DEDGWVRQSAADALGEIGG-ERVR 176 (211)
T ss_dssp HHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCS-HHHH
T ss_pred HHHHHHhCcHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCc-hhHH
Confidence 677777776554445555555566655555666666666543 4444444432 2444445555556665555 3344
Q ss_pred HHHHHHHHcCCCCchhhHHHHHHHHHH
Q 007517 248 QVHAQLVRCQFDVDVYVASVLITMYIK 274 (600)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~li~~y~~ 274 (600)
..+..+.+. ++..+-...+.++.+
T Consensus 177 ~~L~~~l~d---~~~~vr~~A~~aL~~ 200 (211)
T 3ltm_A 177 AAMEKLAET---GTGFARKVAVNYLET 200 (211)
T ss_dssp HHHHHHHHH---CCHHHHHHHHHHHHC
T ss_pred HHHHHHHhC---CCHHHHHHHHHHHHh
Confidence 444444442 344444444444443
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} | Back alignment and structure |
|---|
Probab=93.97 E-value=1.1 Score=39.18 Aligned_cols=179 Identities=8% Similarity=0.018 Sum_probs=112.5
Q ss_pred HHHhhCCCCCcchHHHHHHHHHcCCCHHHHHHHHccCCCCCcchHHHHHHHHHhcCChHHHHHHHhhCCCCCcccHHHHH
Q 007517 27 TLFWQMPEKNVVSWTVMLGGFIRDSRIDDARRLFDMMPEKDVVAQTNMVLGYCQDGRVDEGREIFDEMPKKNVISWTTMI 106 (600)
Q Consensus 27 ~~~~~m~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li 106 (600)
.+++.+..+|..+-...+..+.+.|..+....+.+.+..+|...-...+.++.+.|..+....+.+.+..++...-...+
T Consensus 18 ~~i~~L~~~~~~vr~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~~~~~~L~~~l~d~~~~vr~~a~ 97 (201)
T 3ltj_A 18 MYIKNLQDDSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQSAA 97 (201)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHhcCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHHHHHHH
Confidence 34444555666666666677777666555555666666667666666777777777766666666666667776666677
Q ss_pred HHHHhCCChHHHHHHHhhcCCCCcchHHHHHHHHhcCCChHHHHHHHhhCCCCCccchhHHHHHHHhcCCHHHHHHHHHh
Q 007517 107 SGYVNNNRIDVARKLFEVMPEKNEVSWTAMLMGYTQCGRIQDAWELFKAMPMKSVVASNSMILGLGQNGEVQKARVVFDQ 186 (600)
Q Consensus 107 ~~~~~~g~~~~A~~~~~~m~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~ 186 (600)
.++.+.+..+..-.+...+..+|...-...+.++...++.+....+...+..++..+....+.++.+.|..+....+.+.
T Consensus 98 ~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~~~~~~L~~~ 177 (201)
T 3ltj_A 98 VALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGGERVRAAMEKL 177 (201)
T ss_dssp HHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHTCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCSHHHHHHHHHH
T ss_pred HHHHHhCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCchhHHHHHHHH
Confidence 77777777644444444444477777777777777777765555555555567777777888888888775443334444
Q ss_pred cccCChhhHHHHHHHHHHc
Q 007517 187 MREKDDATWSGMIKVYERK 205 (600)
Q Consensus 187 ~~~~~~~~~~~li~~~~~~ 205 (600)
+.+++...-...+.++.+.
T Consensus 178 l~d~~~~vr~~A~~aL~~l 196 (201)
T 3ltj_A 178 AETGTGFARKVAVNYLETH 196 (201)
T ss_dssp HHHCCHHHHHHHHHHHHHC
T ss_pred HhCCCHHHHHHHHHHHHHH
Confidence 4455555544455554443
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=93.41 E-value=0.26 Score=37.99 Aligned_cols=65 Identities=17% Similarity=-0.001 Sum_probs=54.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-------CCCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007517 395 DAIIWGSLLGACRTHMKLDLAEVAAKKLLQLE-------PKNAGPYILLSNIYASQGRFHDVAELRKNMRKR 459 (600)
Q Consensus 395 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 459 (600)
+...+..|...+...|+++.|...++++++.. +..+..+..|+.+|.+.|++++|..++++..+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 45566788889999999999999999988742 234566889999999999999999999998763
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=92.80 E-value=0.73 Score=36.66 Aligned_cols=87 Identities=17% Similarity=0.062 Sum_probs=55.0
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHH---HHHHHHHhHhcCCCCC--ChHHHHHHHHHHhhcCCH
Q 007517 306 YGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKE---GREIFESMKSKYLVEP--KTEHYACMVDLLGRAGQV 380 (600)
Q Consensus 306 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~---a~~~~~~~~~~~~~~p--~~~~~~~li~~~~~~g~~ 380 (600)
......+.+-|.+....|. |+..+-..+..++.++..... |..+++.+.+.. .| .....-.|.-++.|.|++
T Consensus 14 ~~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~--~p~~~Rd~lY~LAvg~yklg~Y 90 (126)
T 1nzn_A 14 VEDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG--SKEEQRDYVFYLAVGNYRLKEY 90 (126)
T ss_dssp HHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS--CHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHHhhhH
Confidence 3344555666666555443 666655566667777776555 888888776641 23 234444566778888888
Q ss_pred HHHHHHHHhC-CCCCC
Q 007517 381 EDAMKLIEAM-PFEPD 395 (600)
Q Consensus 381 ~~A~~~~~~m-~~~p~ 395 (600)
++|.+.++.+ .++|+
T Consensus 91 ~~A~~~~~~lL~~eP~ 106 (126)
T 1nzn_A 91 EKALKYVRGLLQTEPQ 106 (126)
T ss_dssp HHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHhCCC
Confidence 8888888877 44554
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.71 E-value=0.88 Score=48.61 Aligned_cols=53 Identities=9% Similarity=0.019 Sum_probs=49.5
Q ss_pred HHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHH
Q 007517 404 GACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNM 456 (600)
Q Consensus 404 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 456 (600)
.-|...|+++.|+.+++++....|.+..++..|+.+|...|+|+.|+-.+..+
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 44678899999999999999999999999999999999999999999998887
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=91.54 E-value=4.5 Score=32.43 Aligned_cols=62 Identities=15% Similarity=0.123 Sum_probs=42.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhc
Q 007517 295 MWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSK 357 (600)
Q Consensus 295 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 357 (600)
..+..+......|.-++-.+++.++.. +.+|++.....+..||.+.|+..++.+++.+..++
T Consensus 93 ~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k 154 (172)
T 1wy6_A 93 HVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKK 154 (172)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 344556667777777777777777533 24667777777777777778777777777777764
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=90.63 E-value=0.87 Score=36.43 Aligned_cols=68 Identities=13% Similarity=0.035 Sum_probs=31.8
Q ss_pred CChHHHHHHHHHHhhcCCHH---HHHHHHHhC-CCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC
Q 007517 362 PKTEHYACMVDLLGRAGQVE---DAMKLIEAM-PFEP--DAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKN 429 (600)
Q Consensus 362 p~~~~~~~li~~~~~~g~~~---~A~~~~~~m-~~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 429 (600)
|++.+--.+..++.+....+ ++..+++.. ...| ....+-.|.-++.+.|+++.|.+..+.+++.+|++
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N 111 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNN 111 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTC
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCC
Confidence 44444444555555554432 344444433 1122 12233444445555555555555555555555555
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=90.44 E-value=21 Score=39.04 Aligned_cols=150 Identities=10% Similarity=0.068 Sum_probs=66.4
Q ss_pred HHHcCChHHHHHHHHHHHHcCCccCchhHhhHHH--HHhhhcchHHHHHHHHHHHHcCCCCchhhHH--HHHHHHHHcCC
Q 007517 202 YERKGYELEVIDLFTLMQKEGVRVNFPSLISVLS--VCASLASLDHGRQVHAQLVRCQFDVDVYVAS--VLITMYIKCGE 277 (600)
Q Consensus 202 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~li~~y~~~g~ 277 (600)
|...|+.+-...++..+.... +......+.. ++...|+.+.+..+.+.+.... .|...... ++.-+|+..|+
T Consensus 500 ~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn 575 (963)
T 4ady_A 500 MLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYGRQELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGN 575 (963)
T ss_dssp HTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCC
T ss_pred hcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCC
Confidence 334555555555555544321 2222222222 2335566666666666655432 22222222 23334556666
Q ss_pred HHHHHhhhhhcCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCH-HHHHHHHHH
Q 007517 278 LVKGKLIFDNFAS---KDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKV-KEGREIFES 353 (600)
Q Consensus 278 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~-~~a~~~~~~ 353 (600)
.....+++..+.+ .++...-.+.-|+...|+.+.+.+++..+.+.+ .|....-..+.-+....|.. .++...+..
T Consensus 576 ~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~ 654 (963)
T 4ady_A 576 NSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDP 654 (963)
T ss_dssp HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHH
Confidence 6666556655432 122222222234444565555566665554432 33332222222222223332 455666666
Q ss_pred hHh
Q 007517 354 MKS 356 (600)
Q Consensus 354 ~~~ 356 (600)
+..
T Consensus 655 L~~ 657 (963)
T 4ady_A 655 LTK 657 (963)
T ss_dssp HHT
T ss_pred Hcc
Confidence 654
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=89.03 E-value=1.9 Score=35.32 Aligned_cols=50 Identities=20% Similarity=0.006 Sum_probs=27.8
Q ss_pred CCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007517 410 MKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMRKR 459 (600)
Q Consensus 410 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 459 (600)
+|.++|..+|+.++++...-+..+...+.-=.++|+...|++++......
T Consensus 74 ~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~ 123 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVER 123 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc
Confidence 56666666666665553333333444444445666666666666665543
|
| >2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=86.66 E-value=8.3 Score=28.83 Aligned_cols=87 Identities=13% Similarity=0.083 Sum_probs=61.3
Q ss_pred chHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHhhhhhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 007517 242 SLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFASKDIVMWNSIISGYAQYGLGEKSLKVFHEMFS 321 (600)
Q Consensus 242 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 321 (600)
.-++|..|-+.+...+. ...+--.-+..+...|++++|..+.+...-||+..|-+|-. .+.|..+++...+.++..
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 96 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGG 96 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 34566666666655543 22232233445667899999999999999999999988755 467888888888888877
Q ss_pred CCCCCCHHHHHH
Q 007517 322 SGVMPDDVTLVG 333 (600)
Q Consensus 322 ~g~~p~~~t~~~ 333 (600)
+| .|....|..
T Consensus 97 sg-~p~~q~Fa~ 107 (115)
T 2uwj_G 97 SS-DPALADFAA 107 (115)
T ss_dssp CS-SHHHHHHHH
T ss_pred CC-CHHHHHHHH
Confidence 76 666666644
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=86.44 E-value=7.9 Score=31.74 Aligned_cols=106 Identities=11% Similarity=0.114 Sum_probs=62.7
Q ss_pred cCChhhHHHHHHHHHHcCCh------HHHHHHHHHHHHcCCccCchh----HhhHHHH---HhhhcchHHHHHHHHHHHH
Q 007517 189 EKDDATWSGMIKVYERKGYE------LEVIDLFTLMQKEGVRVNFPS----LISVLSV---CASLASLDHGRQVHAQLVR 255 (600)
Q Consensus 189 ~~~~~~~~~li~~~~~~g~~------~~A~~~~~~m~~~g~~p~~~t----~~~ll~~---~~~~~~~~~a~~~~~~~~~ 255 (600)
..|..+|-..+...-+.|++ ++..++|++.... ++|+... |.-+.-- +...++.+.|+++|..+++
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARA 88 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 44788888888888888998 8888888887764 5665321 1111111 1223556666666655554
Q ss_pred cCCCCchhhHHHHHHHHHHcCCHHHHHhhhhhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 007517 256 CQFDVDVYVASVLITMYIKCGELVKGKLIFDNFASKDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPD 327 (600)
Q Consensus 256 ~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 327 (600)
.. + +=...|-.-..--.++|+...|.+++.+.+..+.+|.
T Consensus 89 ~h-K-------------------------------kFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~ 128 (161)
T 4h7y_A 89 NC-K-------------------------------KFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPL 128 (161)
T ss_dssp HC-T-------------------------------TBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCH
T ss_pred Hh-H-------------------------------HHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcH
Confidence 31 1 1123344444444567777777777777776655544
|
| >2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=86.18 E-value=8.9 Score=28.72 Aligned_cols=87 Identities=15% Similarity=0.145 Sum_probs=59.2
Q ss_pred chHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHhhhhhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 007517 242 SLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFASKDIVMWNSIISGYAQYGLGEKSLKVFHEMFS 321 (600)
Q Consensus 242 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 321 (600)
.-++|..|-+.+...+. ...+--.-+..+...|++++|..+.+...-||+..|-+|-. .+.|..+++...+.++..
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 97 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLAR 97 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 34566666666655542 22222233445667899999999999999999999988755 356777788877778776
Q ss_pred CCCCCCHHHHHH
Q 007517 322 SGVMPDDVTLVG 333 (600)
Q Consensus 322 ~g~~p~~~t~~~ 333 (600)
+| .|....|..
T Consensus 98 sg-~p~~q~Fa~ 108 (116)
T 2p58_C 98 SQ-DPRIQTFVN 108 (116)
T ss_dssp CC-CHHHHHHHH
T ss_pred CC-CHHHHHHHH
Confidence 65 565555543
|
| >1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 | Back alignment and structure |
|---|
Probab=85.09 E-value=23 Score=32.42 Aligned_cols=220 Identities=10% Similarity=0.018 Sum_probs=122.8
Q ss_pred hhCCCCCcchHHHHHHHHHcCCCHHHHHHHHccCCCCCcchHHHHHHHHHhcCCh----HHHHHHHhh--CCCCCcccHH
Q 007517 30 WQMPEKNVVSWTVMLGGFIRDSRIDDARRLFDMMPEKDVVAQTNMVLGYCQDGRV----DEGREIFDE--MPKKNVISWT 103 (600)
Q Consensus 30 ~~m~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~----~~A~~~~~~--m~~~~~~~~~ 103 (600)
..+..+|..+-...+.++.+.|..+....+...+..++.......+.++.+.|.. .....++.. ..+++...-.
T Consensus 30 ~~L~~~~~~vr~~A~~~L~~~~~~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~~~~l~~~L~~~~~~d~~~~vr~ 109 (280)
T 1oyz_A 30 RLLDDHNSLKRISSARVLQLRGGQDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCEDNVFNILNNMALNDKSACVRA 109 (280)
T ss_dssp HHTTCSSHHHHHHHHHHHHHHCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHHHHHHHHHHHHHHCSCHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHccCCchHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccchHHHHHHHHHHhcCCCHHHHH
Confidence 3334556655555666666666544444455555566666666666677766643 223334432 2245555545
Q ss_pred HHHHHHHhCCC-----hHHHHHHHhhcCC-CCcchHHHHHHHHhcCCChHHHHHHHhhCCCCCccchhHHHHHHHhcC--
Q 007517 104 TMISGYVNNNR-----IDVARKLFEVMPE-KNEVSWTAMLMGYTQCGRIQDAWELFKAMPMKSVVASNSMILGLGQNG-- 175 (600)
Q Consensus 104 ~li~~~~~~g~-----~~~A~~~~~~m~~-p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g-- 175 (600)
..+.++.+.+. ...+...+..+.. ++...-...+.++...++.+....+...+..++..+....+.+..+.|
T Consensus 110 ~a~~aL~~l~~~~~~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~ 189 (280)
T 1oyz_A 110 TAIESTAQRCKKNPIYSPKIVEQSQITAFDKSTNVRRATAFAISVINDKATIPLLINLLKDPNGDVRNWAAFAININKYD 189 (280)
T ss_dssp HHHHHHHHHHHHCGGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC---CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHhccCCcccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhhccC
Confidence 55555555441 3455565555544 777777777788887776543344444444677777777777777765
Q ss_pred CHHHHHHHHHhcccCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCchhHhhHHHHHhhhcchHHHHHHHHHHHH
Q 007517 176 EVQKARVVFDQMREKDDATWSGMIKVYERKGYELEVIDLFTLMQKEGVRVNFPSLISVLSVCASLASLDHGRQVHAQLVR 255 (600)
Q Consensus 176 ~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 255 (600)
..+....+.+.+.+++...-...+.++.+.|+.. ++..+..+.+. |+ .-...+.++...|.. .+...+..+.+
T Consensus 190 ~~~~~~~L~~~l~d~~~~vR~~A~~aL~~~~~~~-~~~~L~~~l~d---~~--vr~~a~~aL~~i~~~-~~~~~L~~~l~ 262 (280)
T 1oyz_A 190 NSDIRDCFVEMLQDKNEEVRIEAIIGLSYRKDKR-VLSVLCDELKK---NT--VYDDIIEAAGELGDK-TLLPVLDTMLY 262 (280)
T ss_dssp CHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCGG-GHHHHHHHHTS---SS--CCHHHHHHHHHHCCG-GGHHHHHHHHT
T ss_pred cHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCHh-hHHHHHHHhcC---cc--HHHHHHHHHHhcCch-hhhHHHHHHHh
Confidence 3333344445555667777777777888888654 44444444432 33 234456677777764 44455555544
Q ss_pred c
Q 007517 256 C 256 (600)
Q Consensus 256 ~ 256 (600)
.
T Consensus 263 ~ 263 (280)
T 1oyz_A 263 K 263 (280)
T ss_dssp T
T ss_pred c
Confidence 3
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=84.38 E-value=14 Score=29.47 Aligned_cols=73 Identities=10% Similarity=0.050 Sum_probs=43.2
Q ss_pred CCCCCHHHHHHHHHHHhccC---CHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCH
Q 007517 323 GVMPDDVTLVGVLSACSYTG---KVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM-PFEPDA 396 (600)
Q Consensus 323 g~~p~~~t~~~ll~a~~~~g---~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~ 396 (600)
+-.|+..|--....++.++. +..+|..+++.+.+.. -.-..+..--|.-++.|.|++++|.+..+.+ .++|+.
T Consensus 35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~-~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N 111 (134)
T 3o48_A 35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA-ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNN 111 (134)
T ss_dssp GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTC
T ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-cchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCC
Confidence 33455554444444555554 3456777777776642 1112445555667777888888888887776 556653
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=83.82 E-value=2.5 Score=41.53 Aligned_cols=67 Identities=12% Similarity=0.026 Sum_probs=51.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHh-----CCCccCCc
Q 007517 400 GSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMRK-----RNVIKPPG 466 (600)
Q Consensus 400 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-----~g~~~~~~ 466 (600)
..++.++...|+.+++...++.++..+|-+...+..++.+|...|+..+|.+.|+...+ .|+.|.|.
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~ 246 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT 246 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 44556677788888888888888888888877888888888888888888888877643 47665554
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=83.80 E-value=30 Score=32.74 Aligned_cols=182 Identities=13% Similarity=0.043 Sum_probs=105.0
Q ss_pred HHHhcCCCh---HHHHHHHhhCCCCCccchhHHHHHHHhcCCHHHHHHHHHhcccCChhhHHHHHHHHHHcCChHHHHHH
Q 007517 138 MGYTQCGRI---QDAWELFKAMPMKSVVASNSMILGLGQNGEVQKARVVFDQMREKDDATWSGMIKVYERKGYELEVIDL 214 (600)
Q Consensus 138 ~~~~~~g~~---~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 214 (600)
......|++ =+|.+. +.++..-|.+.+++++|.+++..- ...+.+.|+...|-++
T Consensus 20 ~~~I~~G~y~~~YEAHQ~-----------~RTi~~Ry~~~k~y~eAidLL~~G-----------A~~ll~~~Q~~sg~DL 77 (336)
T 3lpz_A 20 QRRIAEGQPEEQYEAAQE-----------TRLVAARYSKQGNWAAAVDILASV-----------SQTLLRSGQGGSGGDL 77 (336)
T ss_dssp HHHHHHCCHHHHHHHHHH-----------HHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHH
T ss_pred HHHHhCCCCccccHHHHH-----------HHHHHHHHHhhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHH
Confidence 344455676 445444 356777788889999888876542 2334555665544443
Q ss_pred H----HHHHHcCCccCchhHhhHHHHHhhhcch-----HHHHHHHHHHHHcC--CCCchhhHHHHHHHHHHcCCHHHHHh
Q 007517 215 F----TLMQKEGVRVNFPSLISVLSVCASLASL-----DHGRQVHAQLVRCQ--FDVDVYVASVLITMYIKCGELVKGKL 283 (600)
Q Consensus 215 ~----~~m~~~g~~p~~~t~~~ll~~~~~~~~~-----~~a~~~~~~~~~~~--~~~~~~~~~~li~~y~~~g~~~~A~~ 283 (600)
- +-..+.++++|..+...++..+.....- .-..+...+-.+.| ..-|+.....+...|.+.+++.+|+.
T Consensus 78 ~~llvevy~~~~~~~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~ 157 (336)
T 3lpz_A 78 AVLLVDTFRQAGQRVDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEK 157 (336)
T ss_dssp HHHHHHHHHHHTCCCCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHH
Confidence 3 4445567777777766666666544321 11222233333333 34567788889999999999999999
Q ss_pred hhhhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHh
Q 007517 284 IFDNFASKDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKS 356 (600)
Q Consensus 284 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 356 (600)
.|-.-..+....+..|+.-+...+... .+|.+.-..+|. |...+++..|..+++...+
T Consensus 158 H~ilg~~~s~~~~a~mL~ew~~~~~~~--------------e~dlfiaRaVL~-yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 158 HLVLGTKESPEVLARMEYEWYKQDESH--------------TAPLYCARAVLP-YLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp HHTTSCTTHHHHHHHHHHHHHHTSCGG--------------GHHHHHHHHHHH-HHHTTCHHHHHHHHHHHHH
T ss_pred HHHhcCCchHHHHHHHHHHHHHhcCCc--------------cHHHHHHHHHHH-HHHhCCHHHHHHHHHHHHH
Confidence 885323223356655554444433221 122223333443 3446788888887766554
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=83.01 E-value=17 Score=29.40 Aligned_cols=70 Identities=13% Similarity=0.032 Sum_probs=47.1
Q ss_pred CCChHHHHHHHHHHhhcCCHH---HHHHHHHhC-CCCC-C-HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCC
Q 007517 361 EPKTEHYACMVDLLGRAGQVE---DAMKLIEAM-PFEP-D-AIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNA 430 (600)
Q Consensus 361 ~p~~~~~~~li~~~~~~g~~~---~A~~~~~~m-~~~p-~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 430 (600)
.|+..+--.+..++.+..+.+ ++..+++.. ...| + ....-.|.-++.+.|++++|.++.+.+++.+|+|.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~ 111 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNK 111 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcH
Confidence 455666555666666665543 455555554 1123 2 33445566789999999999999999999999983
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=82.62 E-value=32 Score=32.23 Aligned_cols=181 Identities=9% Similarity=0.038 Sum_probs=106.1
Q ss_pred HhcCCChHHHHHHHhhCCCCCccchhHHHHHHHhcCCHHHHHHHHHhcccCChhhHHHHHHHHHHcCChHHHHHH----H
Q 007517 140 YTQCGRIQDAWELFKAMPMKSVVASNSMILGLGQNGEVQKARVVFDQMREKDDATWSGMIKVYERKGYELEVIDL----F 215 (600)
Q Consensus 140 ~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~----~ 215 (600)
....|++=+|.+.+ .++..-|.+.+++++|.+++..- ...+.+.|+...|-++ .
T Consensus 23 ~I~~G~yYEAhQ~~-----------Rtl~~Ry~~~~~~~eAidlL~~g-----------a~~ll~~~Q~~sa~DLa~llv 80 (312)
T 2wpv_A 23 KIKAGDYYEAHQTL-----------RTIANRYVRSKSYEHAIELISQG-----------ALSFLKAKQGGSGTDLIFYLL 80 (312)
T ss_dssp HHHHTCHHHHHHHH-----------HHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHH
T ss_pred HhhccChHHHHHHH-----------HHHHHHHHHhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHH
Confidence 34456666665554 56777788888888888776542 2334555665554443 4
Q ss_pred HHHHHcCCccCchhHhhHHHHHhhhc-----chHHHHHHHHHHHHcC--CCCchhhHHHHHHHHHHcCCHHHHHhhhhhc
Q 007517 216 TLMQKEGVRVNFPSLISVLSVCASLA-----SLDHGRQVHAQLVRCQ--FDVDVYVASVLITMYIKCGELVKGKLIFDNF 288 (600)
Q Consensus 216 ~~m~~~g~~p~~~t~~~ll~~~~~~~-----~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~ 288 (600)
+-..+.++++|..+...++..+.... +..-.........+.| ..-++.....+...|.+.|++.+|+..|-.-
T Consensus 81 ev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~ 160 (312)
T 2wpv_A 81 EVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLG 160 (312)
T ss_dssp HHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhC
Confidence 44455677777777766666654422 1122223333333333 2347788888999999999999999887643
Q ss_pred CCCCHHHHHHHHHHHHhc---CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhc
Q 007517 289 ASKDIVMWNSIISGYAQY---GLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSK 357 (600)
Q Consensus 289 ~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 357 (600)
...+...+..|+.-+... |...++-- ..-..++. +...|++..|..+|+...++
T Consensus 161 ~~~s~~~~a~~l~~w~~~~~~~~~~e~dl--------------f~~RaVL~-yL~l~n~~~A~~~~~~f~~~ 217 (312)
T 2wpv_A 161 THDSMIKYVDLLWDWLCQVDDIEDSTVAE--------------FFSRLVFN-YLFISNISFAHESKDIFLER 217 (312)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCCHHHHHH--------------HHHHHHHH-HHHTTBHHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHhcCCCCcchHHH--------------HHHHHHHH-HHHhcCHHHHHHHHHHHHHH
Confidence 333555665555544443 43333211 12222332 33468888888888876543
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=82.29 E-value=38 Score=32.93 Aligned_cols=57 Identities=7% Similarity=-0.066 Sum_probs=27.5
Q ss_pred HHHHHhccCCHHHHHHHHHHhHhcCCCCCC----hHHHHHHHHHHhhcCCHHHHHHHHHhC
Q 007517 334 VLSACSYTGKVKEGREIFESMKSKYLVEPK----TEHYACMVDLLGRAGQVEDAMKLIEAM 390 (600)
Q Consensus 334 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m 390 (600)
+...+...|++.+|.+++..+.+...-..+ .++|..-+.+|...|++.++...+...
T Consensus 105 L~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a 165 (394)
T 3txn_A 105 LIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSA 165 (394)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 444555555555555555555442110001 334445555555666666555555443
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=82.12 E-value=41 Score=36.84 Aligned_cols=146 Identities=10% Similarity=0.075 Sum_probs=63.3
Q ss_pred hhcchHHHHHHHHHHHHcCCCCchhhHHHHHHHHH--HcCCHHHHHhhhhhcCC-CCH-HHHH---HHHHHHHhcCChHH
Q 007517 239 SLASLDHGRQVHAQLVRCQFDVDVYVASVLITMYI--KCGELVKGKLIFDNFAS-KDI-VMWN---SIISGYAQYGLGEK 311 (600)
Q Consensus 239 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~--~~g~~~~A~~~~~~~~~-~~~-~~~~---~li~~~~~~g~~~~ 311 (600)
..|+-+....++..+.+.. +..+...++.+++ -.|+.+.+..+.+.+.. .|. +-|. ++.-+|+..|+...
T Consensus 502 GTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~a 578 (963)
T 4ady_A 502 GTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYGRQELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSA 578 (963)
T ss_dssp TCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHH
T ss_pred ccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHH
Confidence 4455555555555555422 2222222333332 45666655555555432 222 2232 22334556666544
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCH-HHHHHHHHhC
Q 007517 312 SLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQV-EDAMKLIEAM 390 (600)
Q Consensus 312 A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~-~~A~~~~~~m 390 (600)
..++++.+.... ..+......+--++...|+.+.+.++++.+...+ .|.+..-.++.-+....|.. .+|.+++..+
T Consensus 579 Iq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~--d~~VR~gAalALGli~aGn~~~~aid~L~~L 655 (963)
T 4ady_A 579 VKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH--NAHVRCGTAFALGIACAGKGLQSAIDVLDPL 655 (963)
T ss_dssp HHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS--CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHH
T ss_pred HHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHhccCCCcHHHHHHHHHH
Confidence 445666666531 1111111111123333455555555555444321 34443333343333334432 4555555555
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=81.36 E-value=7 Score=29.40 Aligned_cols=62 Identities=19% Similarity=0.302 Sum_probs=49.6
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHH
Q 007517 309 GEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVD 372 (600)
Q Consensus 309 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 372 (600)
.-+..+-++.+....+.|+.....+.|.||-+..++..|.++|+.++.+-+ +...+|..+++
T Consensus 26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~--~~~~iY~~~lq 87 (109)
T 1v54_E 26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG--PHKEIYPYVIQ 87 (109)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCTTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc--CchhhHHHHHH
Confidence 446666777777778899999999999999999999999999999887643 34556777665
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=81.11 E-value=46 Score=33.07 Aligned_cols=184 Identities=10% Similarity=0.080 Sum_probs=116.4
Q ss_pred cCChHHHHHHHHHHHHc-----CCccCchhHhhHHHHHhhhcchHHHHHHHHHHHHc-CCCCchhhHHHHHH----HHHH
Q 007517 205 KGYELEVIDLFTLMQKE-----GVRVNFPSLISVLSVCASLASLDHGRQVHAQLVRC-QFDVDVYVASVLIT----MYIK 274 (600)
Q Consensus 205 ~g~~~~A~~~~~~m~~~-----g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~----~y~~ 274 (600)
.|++++|++.+..+.+. ...........++..|...++++...+.+..+.+. |.. ......+++ ....
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~ql--k~ai~~~V~~~~~~l~~ 106 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQL--KLSIQYMIQKVMEYLKS 106 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTS--HHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhh--HHHHHHHHHHHHHHHhc
Confidence 37889999988777653 22333445777888999999999887777666543 322 222233333 2223
Q ss_pred cCCHH--HHHhhhhhcCC---C-------CHHHHHHHHHHHHhcCChHHHHHHHHHHHHC--CCCCCH---HHHHHHHHH
Q 007517 275 CGELV--KGKLIFDNFAS---K-------DIVMWNSIISGYAQYGLGEKSLKVFHEMFSS--GVMPDD---VTLVGVLSA 337 (600)
Q Consensus 275 ~g~~~--~A~~~~~~~~~---~-------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~---~t~~~ll~a 337 (600)
....+ .-..+.+.... . .......|...|-..|++.+|.+++.++... |..+.. ..+...+..
T Consensus 107 ~~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl 186 (445)
T 4b4t_P 107 SKSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMEL 186 (445)
T ss_dssp HCTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHH
T ss_pred CCchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 33322 22233333222 1 1123456778889999999999999998643 322221 245556778
Q ss_pred HhccCCHHHHHHHHHHhHhcC-CCCCC----hHHHHHHHHHHhhcCCHHHHHHHHHhC
Q 007517 338 CSYTGKVKEGREIFESMKSKY-LVEPK----TEHYACMVDLLGRAGQVEDAMKLIEAM 390 (600)
Q Consensus 338 ~~~~g~~~~a~~~~~~~~~~~-~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m 390 (600)
|...+++..|..++.++.... ...+. ...|.+++..+...+++.+|.+.|.+.
T Consensus 187 ~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 187 SILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 889999999999998874321 11222 346788888888999999988877664
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 600 | ||||
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 1e-06 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 6e-05 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 3e-04 | |
| d1zbpa1 | 264 | e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V | 0.001 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.5 bits (114), Expect = 1e-06
Identities = 43/383 (11%), Positives = 105/383 (27%), Gaps = 20/383 (5%)
Query: 78 YCQDGRVDEGREIFDEMPKK---NVISWTTMISGYVNNNRIDVARKLFEVMPEKNEVSWT 134
Q G + ++ ++ N + S + R+D + + ++N +
Sbjct: 9 EYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAE 68
Query: 135 AML-MGYTQCGRIQDAWELFKAMPMKSVVASNSMILGLGQNGEVQKARVVFDQMREKDDA 193
A +G R Q + + V +
Sbjct: 69 AYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSAL 128
Query: 194 TWSGMIKVYERKGYELEVIDLFTLMQKEGVRVNFPSLISVLSVCASLASLDHGRQVHAQL 253
++ + L K + + ++L + + +
Sbjct: 129 QYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLA 188
Query: 254 VRCQFDV------DVYVASVLITMYIKCGELVKGKLIFDNFASKDIVM---WNSIISGYA 304
+ + L + + + + S ++ Y
Sbjct: 189 IHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYY 248
Query: 305 QYGLGEKSLKVFHEMFSSGVMPDDVTLVGVL-SACSYTGKVKEGREIFESMKSKYLVEPK 363
+ GL + ++ + + P L +A G V E + + + L
Sbjct: 249 EQGLIDLAIDTYRRAIE--LQPHFPDAYCNLANALKEKGSVAEAEDCYN--TALRLCPTH 304
Query: 364 TEHYACMVDLLGRAGQVEDAMKLIE-AMPFEPDAIIWGSLLGACRTHM-KLDLAEVAAKK 421
+ + ++ G +E+A++L A+ P+ S L + KL A + K+
Sbjct: 305 ADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKE 364
Query: 422 LLQLEPKNAGPYILLSNIYASQG 444
+++ P A Y + N
Sbjct: 365 AIRISPTFADAYSNMGNTLKEMQ 387
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.1 bits (100), Expect = 6e-05
Identities = 38/352 (10%), Positives = 99/352 (28%), Gaps = 15/352 (4%)
Query: 109 YVNNNRIDVARKLFEVMPEK---NEVSWTAMLMGYTQCGRIQDAWELF----KAMPMKSV 161
+ A + + + N + + QC R+ + K P+ +
Sbjct: 9 EYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAE 68
Query: 162 VASNSMILGLGQNGEVQKARVVFDQMREKDDATWSGMIKVYERKGYELEVIDLFTLMQKE 221
SN + + + +R K D + + +
Sbjct: 69 AYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSAL 128
Query: 222 GVRVNFPSLISVLSVCASLASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKG 281
+ + S L + S L ++ GE+
Sbjct: 129 QYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLA 188
Query: 282 KLIFD---NFASKDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSAC 338
F+ + + ++ + + + ++++ + S +
Sbjct: 189 IHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAV-VHGNLACVY 247
Query: 339 SYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIE-AMPFEPDAI 397
G + + + ++ L + Y + + L G V +A A+ P
Sbjct: 248 YEQGLIDLAIDTYR--RAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHA 305
Query: 398 IWGSLLGACRTHM-KLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHD 448
+ L + ++ A +K L++ P+ A + L+++ QG+ +
Sbjct: 306 DSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQE 357
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.8 bits (94), Expect = 3e-04
Identities = 36/316 (11%), Positives = 85/316 (26%), Gaps = 12/316 (3%)
Query: 173 QNGEVQKARVVFDQMREKD---DATWSGMIKVYERKGYELEVIDLFTLMQKEGVRVNFPS 229
Q G+ + A Q+ ++ + ++ + TL K+ +
Sbjct: 11 QAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPL-LAEA 69
Query: 230 LISVLSVCASLASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFA 289
++ +V L + + +R + D ++ + +
Sbjct: 70 YSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQ 129
Query: 290 SKDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGRE 349
+ G LG + + P+ L
Sbjct: 130 YNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIW--L 187
Query: 350 IFESMKSKYLVEPK-TEHYACMVDLLGRAGQVEDAMKLIEAMP--FEPDAIIWGSLLGAC 406
+ ++P + Y + ++L A + A+ A++ G+L
Sbjct: 188 AIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVY 247
Query: 407 RTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMRKRNVIKPPG 466
+DLA ++ ++L+P Y L+N +G E + P
Sbjct: 248 YEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVA---EAEDCYNTALRLCPTH 304
Query: 467 CSWIEVEKKVHMFTGR 482
+ + G
Sbjct: 305 ADSLNNLANIKREQGN 320
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Score = 38.5 bits (89), Expect = 0.001
Identities = 8/59 (13%), Positives = 18/59 (30%), Gaps = 3/59 (5%)
Query: 411 KLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMRKRNVIKPPGCSW 469
+L A + ++ PK+A + G F + + + + P
Sbjct: 11 QLQQALELLIEAIKASPKDASLRSSFIELLCIDGDF---ERADEQLMQSIKLFPEYLPG 66
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 600 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.89 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.89 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.54 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.5 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.11 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.09 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.04 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.96 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 98.92 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 98.92 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.89 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.88 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.86 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.75 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.59 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.52 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.52 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.5 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.47 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.38 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.37 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.35 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.34 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.28 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.26 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.26 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.24 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.15 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.13 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.12 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.05 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.05 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.03 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.96 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.95 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.93 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.91 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.9 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 97.81 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.77 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.74 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.73 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 97.63 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.57 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.42 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.41 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.37 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.31 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.28 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.17 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.01 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 96.99 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 96.9 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 96.88 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 96.87 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 94.98 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 93.69 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 93.25 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 93.09 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 92.67 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 92.08 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 80.73 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.89 E-value=7.2e-21 Score=189.73 Aligned_cols=362 Identities=12% Similarity=0.103 Sum_probs=238.7
Q ss_pred HHhcCChHHHHHHHhhCCC--C-CcccHHHHHHHHHhCCChHHHHHHHhhcCC--CC-cchHHHHHHHHhcCCChHHHHH
Q 007517 78 YCQDGRVDEGREIFDEMPK--K-NVISWTTMISGYVNNNRIDVARKLFEVMPE--KN-EVSWTAMLMGYTQCGRIQDAWE 151 (600)
Q Consensus 78 ~~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--p~-~~t~~~ll~~~~~~g~~~~a~~ 151 (600)
+.+.|++++|.+.|+++.+ | +..+|..+...|.+.|++++|+..|++..+ |+ ..++..+..++...|++++|..
T Consensus 9 ~~~~G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~~~~A~~ 88 (388)
T d1w3ba_ 9 EYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIE 88 (388)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhcccccccc
Confidence 3344444444444444332 1 234444455555555555555555555444 32 2344445555555555555555
Q ss_pred HHhhCC---CCCccchhHHHHHHHhcCCHHHHHHHHHhcc---cCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCcc
Q 007517 152 LFKAMP---MKSVVASNSMILGLGQNGEVQKARVVFDQMR---EKDDATWSGMIKVYERKGYELEVIDLFTLMQKEGVRV 225 (600)
Q Consensus 152 ~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 225 (600)
.+.... +.+..........+...+....+........ ......+..........+....+...+.+..... +-
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 167 (388)
T d1w3ba_ 89 HYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PN 167 (388)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TT
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHhhccC-cc
Confidence 555444 2222222222333333333333333322222 2233444445555566666666666666655542 22
Q ss_pred CchhHhhHHHHHhhhcchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHhhhhhcCC---CCHHHHHHHHHH
Q 007517 226 NFPSLISVLSVCASLASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFAS---KDIVMWNSIISG 302 (600)
Q Consensus 226 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~ 302 (600)
+...+..+...+...|+.+.|...+...++.. +.+...+..+...|...|++++|...|+.... .+...|..+...
T Consensus 168 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 246 (388)
T d1w3ba_ 168 FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACV 246 (388)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hhHHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHHHHHHHHHHH
Confidence 33445555566667777777777777776654 34566777788888888888888888876543 466778888888
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHH
Q 007517 303 YAQYGLGEKSLKVFHEMFSSGVMPD-DVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVE 381 (600)
Q Consensus 303 ~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 381 (600)
|.+.|++++|+..|++..+. .|+ ..++..+..++...|++++|.+.++..... .+.+...+..+...|.+.|+++
T Consensus 247 ~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~ 322 (388)
T d1w3ba_ 247 YYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL--CPTHADSLNNLANIKREQGNIE 322 (388)
T ss_dssp HHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHH
T ss_pred HHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhcc--CCccchhhhHHHHHHHHCCCHH
Confidence 99999999999999998875 454 457778888889999999999999988775 3567788889999999999999
Q ss_pred HHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCC
Q 007517 382 DAMKLIEAM-PFEPD-AIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGR 445 (600)
Q Consensus 382 ~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 445 (600)
+|.+.|++. ...|+ ..+|..+...+...|++++|...++++++++|+++.+|..|+.+|.+.|+
T Consensus 323 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 323 EAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 999999886 55564 66788899999999999999999999999999998899999999988775
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.89 E-value=5.3e-20 Score=183.37 Aligned_cols=350 Identities=11% Similarity=0.044 Sum_probs=288.6
Q ss_pred HHHHHHhCCChHHHHHHHhhcCC--CC-cchHHHHHHHHhcCCChHHHHHHHhhCC---CCCccchhHHHHHHHhcCCHH
Q 007517 105 MISGYVNNNRIDVARKLFEVMPE--KN-EVSWTAMLMGYTQCGRIQDAWELFKAMP---MKSVVASNSMILGLGQNGEVQ 178 (600)
Q Consensus 105 li~~~~~~g~~~~A~~~~~~m~~--p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~ 178 (600)
+...+.+.|++++|++.|+++.+ |+ ...+..+..++...|++++|...++.++ +.+..++..+...|.+.|+++
T Consensus 5 la~~~~~~G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~~~ 84 (388)
T d1w3ba_ 5 LAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQ 84 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhcccc
Confidence 44567788999999999999877 65 5678888899999999999999999987 556678888999999999999
Q ss_pred HHHHHHHhcccC---ChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCchhHhhHHHHHhhhcchHHHHHHHHHHHH
Q 007517 179 KARVVFDQMREK---DDATWSGMIKVYERKGYELEVIDLFTLMQKEGVRVNFPSLISVLSVCASLASLDHGRQVHAQLVR 255 (600)
Q Consensus 179 ~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 255 (600)
+|...+...... +...+..........+....+........... .................+....+.........
T Consensus 85 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (388)
T d1w3ba_ 85 EAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIE 163 (388)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccccchhhhhHHHHHHhhc
Confidence 999999888753 44455556666666777777777666665543 23344444555556666777777777777766
Q ss_pred cCCCCchhhHHHHHHHHHHcCCHHHHHhhhhhcCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 007517 256 CQFDVDVYVASVLITMYIKCGELVKGKLIFDNFAS---KDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLV 332 (600)
Q Consensus 256 ~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 332 (600)
.. +.+...+..+...+...|+.++|...++.... .+..+|..+...+...|++++|+..|++..... ..+...+.
T Consensus 164 ~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 241 (388)
T d1w3ba_ 164 TQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHG 241 (388)
T ss_dssp HC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHH
T ss_pred cC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhHHHHHH
Confidence 54 45667788889999999999999999987643 467889999999999999999999999998753 44566777
Q ss_pred HHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcC
Q 007517 333 GVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM--PFEPDAIIWGSLLGACRTHM 410 (600)
Q Consensus 333 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~g 410 (600)
.+..++...|++++|...|++..+.. +.+...+..+...|.+.|++++|.+.++.. ..+.+...+..+...+...|
T Consensus 242 ~l~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 319 (388)
T d1w3ba_ 242 NLACVYYEQGLIDLAIDTYRRAIELQ--PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQG 319 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTC--SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHHCC
Confidence 78889999999999999999988742 345788999999999999999999999887 23457788999999999999
Q ss_pred CHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007517 411 KLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMRKR 459 (600)
Q Consensus 411 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 459 (600)
++++|+..+++++++.|+++.++..++.+|...|++++|.+.+++..+.
T Consensus 320 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 368 (388)
T d1w3ba_ 320 NIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp CHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999988753
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.54 E-value=2.2e-13 Score=131.65 Aligned_cols=226 Identities=12% Similarity=0.081 Sum_probs=153.5
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCccC-chhHhhHHHHHhhhcchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcC
Q 007517 198 MIKVYERKGYELEVIDLFTLMQKEGVRVN-FPSLISVLSVCASLASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCG 276 (600)
Q Consensus 198 li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g 276 (600)
....+.+.|++++|+..|++..+. .|+ ..++..+..++...|+++.|...+..+++.. +
T Consensus 25 ~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p----------------- 84 (323)
T d1fcha_ 25 EGLRRLQEGDLPNAVLLFEAAVQQ--DPKHMEAWQYLGTTQAENEQELLAISALRRCLELK-P----------------- 84 (323)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T-----------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-c-----------------
Confidence 444566667777777777666654 232 3344444444444555555555554444432 1
Q ss_pred CHHHHHhhhhhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH----------------HHHHHHHHhc
Q 007517 277 ELVKGKLIFDNFASKDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVT----------------LVGVLSACSY 340 (600)
Q Consensus 277 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t----------------~~~ll~a~~~ 340 (600)
.+...|..+...|...|++++|++.+++.... .|+... ....+..+..
T Consensus 85 --------------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (323)
T d1fcha_ 85 --------------DNQTALMALAVSFTNESLQRQACEILRDWLRY--TPAYAHLVTPAEEGAGGAGLGPSKRILGSLLS 148 (323)
T ss_dssp --------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--STTTGGGCC---------------CTTHHHHH
T ss_pred --------------ccccccccccccccccccccccccchhhHHHh--ccchHHHHHhhhhhhhhcccccchhhHHHHHH
Confidence 23445555555555555555565555555442 222110 0111122333
Q ss_pred cCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHH
Q 007517 341 TGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM-PFEP-DAIIWGSLLGACRTHMKLDLAEVA 418 (600)
Q Consensus 341 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~ 418 (600)
.+...++.+.+....+...-.++..++..+...+.+.|++++|...+++. ...| +...|..+...+...|++++|...
T Consensus 149 ~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~ 228 (323)
T d1fcha_ 149 DSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAA 228 (323)
T ss_dssp HHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHH
Confidence 45677788888877664333456788889999999999999999999987 3344 577899999999999999999999
Q ss_pred HHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007517 419 AKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMRKR 459 (600)
Q Consensus 419 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 459 (600)
++++++++|+++.++..++.+|...|++++|.+.+++..+.
T Consensus 229 ~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 269 (323)
T d1fcha_ 229 YRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNM 269 (323)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999988763
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.50 E-value=1.2e-12 Score=126.45 Aligned_cols=265 Identities=13% Similarity=0.068 Sum_probs=192.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcccC---ChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCcc-CchhHhhHHHHHhhhc
Q 007517 166 SMILGLGQNGEVQKARVVFDQMREK---DDATWSGMIKVYERKGYELEVIDLFTLMQKEGVRV-NFPSLISVLSVCASLA 241 (600)
Q Consensus 166 ~li~~~~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~ 241 (600)
-....|.+.|++++|...|+++.+. +..+|..+...|...|++++|+..|.+..+. .| +...+..+...+...|
T Consensus 24 ~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~ 101 (323)
T d1fcha_ 24 EEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLEL--KPDNQTALMALAVSFTNES 101 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcc--ccccccccccccccccccc
Confidence 3566789999999999999998753 5778999999999999999999999998875 34 4556777778888999
Q ss_pred chHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHhhhhhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 007517 242 SLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFASKDIVMWNSIISGYAQYGLGEKSLKVFHEMFS 321 (600)
Q Consensus 242 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 321 (600)
++++|.+.+..+.+.... ........... ... .+.......+..+...+...+|.+.|.+..+
T Consensus 102 ~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~-~~~---------------~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~ 164 (323)
T d1fcha_ 102 LQRQACEILRDWLRYTPA-YAHLVTPAEEG-AGG---------------AGLGPSKRILGSLLSDSLFLEVKELFLAAVR 164 (323)
T ss_dssp CHHHHHHHHHHHHHTSTT-TGGGCC-------------------------------CTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccchhhHHHhccc-hHHHHHhhhhh-hhh---------------cccccchhhHHHHHHhhHHHHHHHHHHHHHH
Confidence 999999999988875421 11111100000 000 0111111122334445667788888888776
Q ss_pred CC-CCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHH
Q 007517 322 SG-VMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM-PFEP-DAII 398 (600)
Q Consensus 322 ~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~ 398 (600)
.. -.++...+..+...+...|++++|...|+...... +.+...|..+...|.+.|++++|.+.|++. ...| +...
T Consensus 165 ~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a 242 (323)
T d1fcha_ 165 LDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR--PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRS 242 (323)
T ss_dssp HSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HhhcccccccchhhHHHHHHHHHHhhhhcccccccccc--cccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHH
Confidence 42 23345677778888899999999999999987752 345888999999999999999999999987 4445 5778
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCch-----------HHHHHHHHHhcCCchHHHH
Q 007517 399 WGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGP-----------YILLSNIYASQGRFHDVAE 451 (600)
Q Consensus 399 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~-----------~~~l~~~~~~~g~~~~a~~ 451 (600)
|..+..+|...|++++|+..++++++++|++... +..+..++...|+.+.+..
T Consensus 243 ~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~~ 306 (323)
T d1fcha_ 243 RYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGA 306 (323)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999999999999999999998876543 3445666766777765543
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.11 E-value=9e-09 Score=97.75 Aligned_cols=187 Identities=12% Similarity=0.079 Sum_probs=149.1
Q ss_pred cchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHhhhhhcCC---CC-HHHHHHHHHHHHhcCChHHHHHHH
Q 007517 241 ASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFAS---KD-IVMWNSIISGYAQYGLGEKSLKVF 316 (600)
Q Consensus 241 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~-~~~~~~li~~~~~~g~~~~A~~~~ 316 (600)
+..+.+..+++..++...+.+...+...+..+.+.|+++.|..+|+++.. .+ ...|...+....+.|+.++|.++|
T Consensus 78 ~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~ 157 (308)
T d2onda1 78 LFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIF 157 (308)
T ss_dssp HHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHH
Confidence 45678888999888776667777888889999999999999999988754 23 457999999999999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHH-HHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC----C
Q 007517 317 HEMFSSGVMPDDVTLVGVLS-ACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM----P 391 (600)
Q Consensus 317 ~~m~~~g~~p~~~t~~~ll~-a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m----~ 391 (600)
+++.+.+.. +...|..... -+...|+.+.|..+|+.+.+.+ +.++..|...++.+.+.|+++.|..+|++. +
T Consensus 158 ~~al~~~~~-~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~--p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~ 234 (308)
T d2onda1 158 KKAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGS 234 (308)
T ss_dssp HHHHTSTTC-CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSS
T ss_pred HHHHHhCCC-cHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhh--hhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Confidence 999876422 2233333222 2345688999999999998853 456888999999999999999999999986 3
Q ss_pred CCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCC
Q 007517 392 FEPD--AIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNA 430 (600)
Q Consensus 392 ~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 430 (600)
..|+ ...|...+.--..+|+.+.+..+.+++.+..|...
T Consensus 235 ~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~~ 275 (308)
T d2onda1 235 LPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEY 275 (308)
T ss_dssp SCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTT
T ss_pred CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcccc
Confidence 4443 56899999988999999999999999998888663
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.09 E-value=1.2e-08 Score=98.48 Aligned_cols=226 Identities=11% Similarity=0.017 Sum_probs=142.6
Q ss_pred HHHHHhhhcchHHHHHHHHHHHHcCC-----CCchhhHHHHHHHHHHcCCHHHHHhhhhhcCC-------C----CHHHH
Q 007517 233 VLSVCASLASLDHGRQVHAQLVRCQF-----DVDVYVASVLITMYIKCGELVKGKLIFDNFAS-------K----DIVMW 296 (600)
Q Consensus 233 ll~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-------~----~~~~~ 296 (600)
+..++...|++++|...+....+... ......+..+...|...|++..|...+..... + ....+
T Consensus 57 lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~ 136 (366)
T d1hz4a_ 57 LGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLV 136 (366)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHH
Confidence 33344444555555555444433210 00122334455556666666666666554321 1 12345
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCC----CCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCC-----ChHHH
Q 007517 297 NSIISGYAQYGLGEKSLKVFHEMFSSGV----MPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEP-----KTEHY 367 (600)
Q Consensus 297 ~~li~~~~~~g~~~~A~~~~~~m~~~g~----~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-----~~~~~ 367 (600)
..+...+...|+++.+...+........ .....++......+...+....+...+........-.. ....+
T Consensus 137 ~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~ 216 (366)
T d1hz4a_ 137 RIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNAN 216 (366)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHH
T ss_pred HHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHH
Confidence 5566777888888888888887765321 11223444555566677888888777766544221111 13345
Q ss_pred HHHHHHHhhcCCHHHHHHHHHhC-CCCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHhc------cCCCCCchHHH
Q 007517 368 ACMVDLLGRAGQVEDAMKLIEAM-PFEP-----DAIIWGSLLGACRTHMKLDLAEVAAKKLLQ------LEPKNAGPYIL 435 (600)
Q Consensus 368 ~~li~~~~~~g~~~~A~~~~~~m-~~~p-----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~------~~p~~~~~~~~ 435 (600)
..+...+...|++++|...+++. ...| ....+..+..++...|++++|...+++++. ..|.....+..
T Consensus 217 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 296 (366)
T d1hz4a_ 217 KVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLL 296 (366)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHH
Confidence 66777888899999999998876 2221 245567788889999999999999998874 33555567888
Q ss_pred HHHHHHhcCCchHHHHHHHHHHh
Q 007517 436 LSNIYASQGRFHDVAELRKNMRK 458 (600)
Q Consensus 436 l~~~~~~~g~~~~a~~~~~~m~~ 458 (600)
++.+|...|++++|.+.+++..+
T Consensus 297 la~~~~~~g~~~~A~~~l~~Al~ 319 (366)
T d1hz4a_ 297 LNQLYWQAGRKSDAQRVLLDALK 319 (366)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH
Confidence 99999999999999999987754
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.04 E-value=2.8e-08 Score=95.74 Aligned_cols=283 Identities=9% Similarity=-0.013 Sum_probs=172.1
Q ss_pred HHHHhcCCHHHHHHHHHhccc--CC------hhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCc-cC----chhHhhHHH
Q 007517 169 LGLGQNGEVQKARVVFDQMRE--KD------DATWSGMIKVYERKGYELEVIDLFTLMQKEGVR-VN----FPSLISVLS 235 (600)
Q Consensus 169 ~~~~~~g~~~~A~~~f~~~~~--~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~t~~~ll~ 235 (600)
..+...|++++|.++|++..+ |+ ...++.+...|...|++++|+..|++....... ++ ..++..+..
T Consensus 20 ~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 99 (366)
T d1hz4a_ 20 QVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSE 99 (366)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHH
Confidence 344555666666666555432 11 124555556666666666666666665442111 11 123334444
Q ss_pred HHhhhcchHHHHHHHHHHHHc----CCCCc---hhhHHHHHHHHHHcCCHHHHHhhhhhcCC--------CCHHHHHHHH
Q 007517 236 VCASLASLDHGRQVHAQLVRC----QFDVD---VYVASVLITMYIKCGELVKGKLIFDNFAS--------KDIVMWNSII 300 (600)
Q Consensus 236 ~~~~~~~~~~a~~~~~~~~~~----~~~~~---~~~~~~li~~y~~~g~~~~A~~~~~~~~~--------~~~~~~~~li 300 (600)
.+...|++..+...+...... +.+.. ...+..+...|...|+++.|...+..... ....++..+.
T Consensus 100 ~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (366)
T d1hz4a_ 100 ILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLI 179 (366)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHH
Confidence 555666666666666554431 11111 23444566777788888888777765432 1344566666
Q ss_pred HHHHhcCChHHHHHHHHHHHHC--CCCCCH----HHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCC--CChHHHHHHHH
Q 007517 301 SGYAQYGLGEKSLKVFHEMFSS--GVMPDD----VTLVGVLSACSYTGKVKEGREIFESMKSKYLVE--PKTEHYACMVD 372 (600)
Q Consensus 301 ~~~~~~g~~~~A~~~~~~m~~~--g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~--p~~~~~~~li~ 372 (600)
..+...+...++...+.+.... ...... ..+......+...|+.++|...+........-. .....+..+..
T Consensus 180 ~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~ 259 (366)
T d1hz4a_ 180 QCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIAR 259 (366)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHH
Confidence 7778888888888888776442 111111 234445566778899999999988776532111 12445667888
Q ss_pred HHhhcCCHHHHHHHHHhC-------CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC---------CchHHH
Q 007517 373 LLGRAGQVEDAMKLIEAM-------PFEPD-AIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKN---------AGPYIL 435 (600)
Q Consensus 373 ~~~~~g~~~~A~~~~~~m-------~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---------~~~~~~ 435 (600)
.|...|++++|.+.+++. +..|+ ...+..+...+...|++++|...+++++++.+.. ...+..
T Consensus 260 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~~~~~~~~~~~~~~~~~~ 339 (366)
T d1hz4a_ 260 AQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQ 339 (366)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCCCHHHHTTHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhhcCcHHHHHHHHHHHHH
Confidence 999999999999988865 33343 4467788888999999999999999988764321 122334
Q ss_pred HHHHHHhcCCchHHHH
Q 007517 436 LSNIYASQGRFHDVAE 451 (600)
Q Consensus 436 l~~~~~~~g~~~~a~~ 451 (600)
+...+...++.+++.+
T Consensus 340 ~~~~l~~~~~l~e~e~ 355 (366)
T d1hz4a_ 340 QLRQLIQLNTLPELEQ 355 (366)
T ss_dssp HHHHHHHTTCSCHHHH
T ss_pred HHHHHHhcCCChHHHH
Confidence 5555666777777754
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.96 E-value=3.8e-09 Score=97.48 Aligned_cols=196 Identities=10% Similarity=-0.071 Sum_probs=113.3
Q ss_pred hHHHHHhhhcchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHhhhhhcCC---CCHHHHHHHHHHHHhcCC
Q 007517 232 SVLSVCASLASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFAS---KDIVMWNSIISGYAQYGL 308 (600)
Q Consensus 232 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~ 308 (600)
.+..++.+.|++++|...+...++.. |.++.+++.+..+|.+.|++++|...|++... .+..+|..+...|...|+
T Consensus 42 ~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~ 120 (259)
T d1xnfa_ 42 ERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGR 120 (259)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHHHhh
Confidence 33444455555555555555555543 34556667777777777777777777776543 345677777888888888
Q ss_pred hHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcC----CHHHH
Q 007517 309 GEKSLKVFHEMFSSGVMPD-DVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAG----QVEDA 383 (600)
Q Consensus 309 ~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g----~~~~A 383 (600)
+++|++.|++..+. .|+ ......+..+....+..+....+....... .+....++ ++..+.... ..+.+
T Consensus 121 ~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~~~~~~~~~~~~~ 194 (259)
T d1xnfa_ 121 DKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS---DKEQWGWN-IVEFYLGNISEQTLMERL 194 (259)
T ss_dssp HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS---CCCSTHHH-HHHHHTTSSCHHHHHHHH
T ss_pred HHHHHHHHHHHHhh--ccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhcc---chhhhhhh-HHHHHHHHHHHHHHHHHH
Confidence 88888888887764 333 333333333444445444444444444332 22222222 222222221 22222
Q ss_pred HHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHH
Q 007517 384 MKLIEAM-PFEPD-AIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYI 434 (600)
Q Consensus 384 ~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 434 (600)
...+... ...|+ ..+|..+...+...|++++|...++++++.+|++...|.
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 247 (259)
T d1xnfa_ 195 KADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHR 247 (259)
T ss_dssp HHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHHHH
T ss_pred HHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHH
Confidence 2222211 11232 346777888899999999999999999999998754443
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.92 E-value=2.5e-08 Score=94.77 Aligned_cols=221 Identities=10% Similarity=0.087 Sum_probs=132.3
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCchhHhhHHHHHhhhcchHHHHHHHHHHHHcCCCCchhhHHHHHHHHH
Q 007517 194 TWSGMIKVYERKGYELEVIDLFTLMQKEGVRVNFPSLISVLSVCASLASLDHGRQVHAQLVRCQFDVDVYVASVLITMYI 273 (600)
Q Consensus 194 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~ 273 (600)
.++.+...+.+.+.+++|+++++++... .|+ +...|+.....+.
T Consensus 45 a~~~~~~~~~~~e~~~~Al~~~~~ai~l--nP~----------------------------------~~~a~~~r~~~l~ 88 (315)
T d2h6fa1 45 VYDYFRAVLQRDERSERAFKLTRDAIEL--NAA----------------------------------NYTVWHFRRVLLK 88 (315)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHH--CTT----------------------------------CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHH--CCC----------------------------------ChHHHHHHHHHHH
Confidence 4555555666666677777776666653 333 3334444444444
Q ss_pred HcC-CHHHHHhhhhhcC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHH
Q 007517 274 KCG-ELVKGKLIFDNFA---SKDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMP-DDVTLVGVLSACSYTGKVKEGR 348 (600)
Q Consensus 274 ~~g-~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~ 348 (600)
..| ++++|...++... ..+..+|+.+...+.+.|++++|++.++++.+. .| +...|..+...+...|++++|.
T Consensus 89 ~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~--dp~n~~a~~~~~~~~~~~~~~~~Al 166 (315)
T d2h6fa1 89 SLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQ--DAKNYHAWQHRQWVIQEFKLWDNEL 166 (315)
T ss_dssp HTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCTTHH
T ss_pred HhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHhhccHHHHHHHHhhhhhh--hhcchHHHHHHHHHHHHHHhhHHHH
Confidence 444 3555555555443 235666777666777777777777777777663 33 3456666666677777777777
Q ss_pred HHHHHhHhcCCCCCChHHHHHHHHHHhhcCC------HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHH
Q 007517 349 EIFESMKSKYLVEPKTEHYACMVDLLGRAGQ------VEDAMKLIEAM-PFEP-DAIIWGSLLGACRTHMKLDLAEVAAK 420 (600)
Q Consensus 349 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~------~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~ 420 (600)
+.++.+.+.. +.+...|+.+..++.+.|. +++|.+.+.+. ...| +...|..+...+.. ...+++...++
T Consensus 167 ~~~~~al~~~--p~n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~-~~~~~~~~~~~ 243 (315)
T d2h6fa1 167 QYVDQLLKED--VRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQD-RGLSKYPNLLN 243 (315)
T ss_dssp HHHHHHHHHC--TTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTT-TCGGGCHHHHH
T ss_pred HHHHHHHHHC--CccHHHHHHHHHHHHHccccchhhhhHHhHHHHHHHHHhCCCchHHHHHHHHHHHh-cChHHHHHHHH
Confidence 7777776531 2345566666666555544 56777776665 3344 56777777665544 44577888888
Q ss_pred HHhccCCCCCc--hHHHHHHHHHhc--CCchHHHHHHHH
Q 007517 421 KLLQLEPKNAG--PYILLSNIYASQ--GRFHDVAELRKN 455 (600)
Q Consensus 421 ~~~~~~p~~~~--~~~~l~~~~~~~--g~~~~a~~~~~~ 455 (600)
++.++.|+... .+..++.+|... +..+.+...+++
T Consensus 244 ~~~~l~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~k 282 (315)
T d2h6fa1 244 QLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNK 282 (315)
T ss_dssp HHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHH
T ss_pred HHHHhCCCcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 88887776433 345566666543 444444444443
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.92 E-value=1.1e-08 Score=97.21 Aligned_cols=193 Identities=7% Similarity=0.079 Sum_probs=159.5
Q ss_pred hhhHHHHHHHHHHcCCHHHHHhhhhhcCC---CCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHCCCCCC-HHHHHHHHH
Q 007517 262 VYVASVLITMYIKCGELVKGKLIFDNFAS---KDIVMWNSIISGYAQYG-LGEKSLKVFHEMFSSGVMPD-DVTLVGVLS 336 (600)
Q Consensus 262 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~ 336 (600)
..+++.+...+.+.+..++|+++++.+.+ .+..+|+.....+...| ++++|+..+++..+. .|+ ..+|.....
T Consensus 43 ~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~--~p~~~~a~~~~~~ 120 (315)
T d2h6fa1 43 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE--QPKNYQVWHHRRV 120 (315)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH--HHhhhhHHHHHhH
Confidence 34556677778889999999999998764 47789999999988877 489999999999875 455 568888888
Q ss_pred HHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCC---
Q 007517 337 ACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM-PFEP-DAIIWGSLLGACRTHMK--- 411 (600)
Q Consensus 337 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~--- 411 (600)
.+...|++++|.+.++.+.+.. +.+...|..+...+.+.|++++|.+.++++ .+.| +...|+.+...+...+.
T Consensus 121 ~~~~l~~~~eAl~~~~kal~~d--p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~~~~~ 198 (315)
T d2h6fa1 121 LVEWLRDPSQELEFIADILNQD--AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYND 198 (315)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHHhhccHHHHHHHHhhhhhhh--hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHHHHHHccccch
Confidence 8999999999999999998752 446889999999999999999999999988 4445 57788887777666554
Q ss_pred ---HHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007517 412 ---LDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMRKR 459 (600)
Q Consensus 412 ---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 459 (600)
.++|...+.++++++|+++..+..++.++...| .+++.+.++...+.
T Consensus 199 ~~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~~~-~~~~~~~~~~~~~l 248 (315)
T d2h6fa1 199 RAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRG-LSKYPNLLNQLLDL 248 (315)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTC-GGGCHHHHHHHHHH
T ss_pred hhhhHHhHHHHHHHHHhCCCchHHHHHHHHHHHhcC-hHHHHHHHHHHHHh
Confidence 678999999999999999999998888877665 57888888877653
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.89 E-value=3.1e-09 Score=102.40 Aligned_cols=259 Identities=8% Similarity=-0.040 Sum_probs=177.1
Q ss_pred cCCHHHHHHHHHhccc--C-ChhhHHHHHHH----------HHHcCChHHHHHHHHHHHHcCCccC-chhHhhHHHHHhh
Q 007517 174 NGEVQKARVVFDQMRE--K-DDATWSGMIKV----------YERKGYELEVIDLFTLMQKEGVRVN-FPSLISVLSVCAS 239 (600)
Q Consensus 174 ~g~~~~A~~~f~~~~~--~-~~~~~~~li~~----------~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~ 239 (600)
.+..++|++++++..+ | +...|+..-.. +...|.+++|+.+++...+. .|+ ...+.....++..
T Consensus 42 ~~~~~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~--~pk~~~~~~~~~~~~~~ 119 (334)
T d1dcea1 42 GELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSYGTWHHRCWLLSR 119 (334)
T ss_dssp TCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHT
T ss_pred ccccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHh--CCCcHHHHHHhhHHHHH
Confidence 3334677777776653 2 22334432222 23345577888888888765 343 3344444444444
Q ss_pred hc--chHHHHHHHHHHHHcCCCCchhhH-HHHHHHHHHcCCHHHHHhhhhhcCC---CCHHHHHHHHHHHHhcCChHHHH
Q 007517 240 LA--SLDHGRQVHAQLVRCQFDVDVYVA-SVLITMYIKCGELVKGKLIFDNFAS---KDIVMWNSIISGYAQYGLGEKSL 313 (600)
Q Consensus 240 ~~--~~~~a~~~~~~~~~~~~~~~~~~~-~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~ 313 (600)
.+ +.+.+...+..+.+... .+...+ ..+...+...|..++|...++.... .+..+|+.+...+.+.|++++|.
T Consensus 120 ~~~~~~~~a~~~~~~al~~~~-~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~ 198 (334)
T d1dcea1 120 LPEPNWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSG 198 (334)
T ss_dssp CSSCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred hccccHHHHHHHHHHHHhhCc-hhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHH
Confidence 44 57888888888887653 334443 3455677778999999999988765 46788999999999999988887
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CC
Q 007517 314 KVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM-PF 392 (600)
Q Consensus 314 ~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~ 392 (600)
..+++.... .|+.. .+...+...+..+++...+...... -+++...+..++..+...|+.++|.+.+.+. +.
T Consensus 199 ~~~~~~~~~--~~~~~---~~~~~~~~l~~~~~a~~~~~~~l~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 271 (334)
T d1dcea1 199 PQGRLPENV--LLKEL---ELVQNAFFTDPNDQSAWFYHRWLLG--RAEPLFRCELSVEKSTVLQSELESCKELQELEPE 271 (334)
T ss_dssp SCCSSCHHH--HHHHH---HHHHHHHHHCSSCSHHHHHHHHHHS--CCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHhHHh--HHHHH---HHHHHHHHhcchhHHHHHHHHHHHh--CcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 666554432 23222 2223344556667777777776653 2445666777788888899999999998877 54
Q ss_pred CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHh
Q 007517 393 EP-DAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYAS 442 (600)
Q Consensus 393 ~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 442 (600)
.| +...|..+...+...|+.++|...++++++++|.+...|..|...+.-
T Consensus 272 ~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~L~~~~~~ 322 (334)
T d1dcea1 272 NKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLL 322 (334)
T ss_dssp CHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHHHHHHHHHhH
Confidence 55 356788888999999999999999999999999987777878777653
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.88 E-value=7.8e-09 Score=95.35 Aligned_cols=192 Identities=11% Similarity=0.042 Sum_probs=137.6
Q ss_pred hhHHHHHHHHHHcCCHHHHHhhhhhcCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHH
Q 007517 263 YVASVLITMYIKCGELVKGKLIFDNFAS---KDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPD-DVTLVGVLSAC 338 (600)
Q Consensus 263 ~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~ 338 (600)
.++..+...|.+.|++++|...|++... .++.+|+.+..+|.+.|++++|++.|++..+. .|+ ..++..+..++
T Consensus 38 ~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~ 115 (259)
T d1xnfa_ 38 QLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL--DPTYNYAHLNRGIAL 115 (259)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHH--HhhhhhhHHHHHHHH
Confidence 4666778899999999999999998653 58899999999999999999999999999985 454 45777888889
Q ss_pred hccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHH----cCCHH
Q 007517 339 SYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM-PFEPDAIIWGSLLGACRT----HMKLD 413 (600)
Q Consensus 339 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~----~g~~~ 413 (600)
...|++++|.+.|+...+.. +.+......+...+.+.+..+.+..+.... ...++...+.. +..+.. .+..+
T Consensus 116 ~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 192 (259)
T d1xnfa_ 116 YYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNI-VEFYLGNISEQTLME 192 (259)
T ss_dssp HHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTHHHH-HHHHTTSSCHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHhhc--cccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccchhhhhhhH-HHHHHHHHHHHHHHH
Confidence 99999999999999988752 334555555555666666655555544433 11222222221 222211 12233
Q ss_pred HHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007517 414 LAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMRKR 459 (600)
Q Consensus 414 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 459 (600)
.+...+.......|..+.+|..++..|...|++++|.+.+++..+.
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 238 (259)
T d1xnfa_ 193 RLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN 238 (259)
T ss_dssp HHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 3333344444456666677888999999999999999999998764
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.86 E-value=1.2e-07 Score=89.73 Aligned_cols=182 Identities=9% Similarity=0.061 Sum_probs=143.2
Q ss_pred CCHHHHHhhhhhcC----CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHH
Q 007517 276 GELVKGKLIFDNFA----SKDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIF 351 (600)
Q Consensus 276 g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 351 (600)
+..++|..+|++.. ..+...|...+..+...|+.++|..+|+++.+.........|...+..+.+.|+.+.|+++|
T Consensus 78 ~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~ 157 (308)
T d2onda1 78 LFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIF 157 (308)
T ss_dssp HHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHH
Confidence 44577888887753 34677899999999999999999999999987532223456888888999999999999999
Q ss_pred HHhHhcCCCCCChHHHHHHHHHH-hhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC
Q 007517 352 ESMKSKYLVEPKTEHYACMVDLL-GRAGQVEDAMKLIEAM--PFEPDAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPK 428 (600)
Q Consensus 352 ~~~~~~~~~~p~~~~~~~li~~~-~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 428 (600)
+.+.+.. +.+...|...+... ...|+.+.|..+|+.+ ..+.+...|...+..+...|+.+.|..+|++++...|.
T Consensus 158 ~~al~~~--~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~ 235 (308)
T d2onda1 158 KKAREDA--RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL 235 (308)
T ss_dssp HHHHTST--TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSS
T ss_pred HHHHHhC--CCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Confidence 9988743 34555565555543 4468999999999988 22346788999999999999999999999999997775
Q ss_pred CCc----hHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007517 429 NAG----PYILLSNIYASQGRFHDVAELRKNMRKR 459 (600)
Q Consensus 429 ~~~----~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 459 (600)
++. .+...+..-...|+.+.+.++.+++.+.
T Consensus 236 ~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~ 270 (308)
T d2onda1 236 PPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp CGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 543 4556666667789999999999998764
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.75 E-value=3.9e-09 Score=101.68 Aligned_cols=252 Identities=7% Similarity=-0.070 Sum_probs=174.8
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCccCchhH-h---hHHHH-------HhhhcchHHHHHHHHHHHHcCCCCchhhHH
Q 007517 198 MIKVYERKGYELEVIDLFTLMQKEGVRVNFPSL-I---SVLSV-------CASLASLDHGRQVHAQLVRCQFDVDVYVAS 266 (600)
Q Consensus 198 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~-~---~ll~~-------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 266 (600)
++......+..++|++++.+.... .|+..+. + .++.. ....+.++++...++.+.+.. +.+...+.
T Consensus 35 ~~~~~~~~~~~~~al~~~~~~l~~--~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~-pk~~~~~~ 111 (334)
T d1dcea1 35 VFQKRQAGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWH 111 (334)
T ss_dssp HHHHHHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHHHHhcccccHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC-CCcHHHHH
Confidence 333333444568999999999874 5776543 1 12222 233456778888888888765 45666677
Q ss_pred HHHHHHHHcC--CHHHHHhhhhhcCC---CCHHHHHHH-HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 007517 267 VLITMYIKCG--ELVKGKLIFDNFAS---KDIVMWNSI-ISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSY 340 (600)
Q Consensus 267 ~li~~y~~~g--~~~~A~~~~~~~~~---~~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 340 (600)
.+...+...+ ++++|...++.+.. ++...|... ...+...|.+++|+..++++.+.. +-+...+..+..++..
T Consensus 112 ~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~-p~~~~a~~~l~~~~~~ 190 (334)
T d1dcea1 112 HRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQ 190 (334)
T ss_dssp HHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHH
T ss_pred HhhHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 7776766665 47888888887643 456666544 456777888999999998887652 2345567777777778
Q ss_pred cCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 007517 341 TGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM--PFEPDAIIWGSLLGACRTHMKLDLAEVA 418 (600)
Q Consensus 341 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~~ 418 (600)
.|++++|...+....+. .|+ ...+...+...+..+++...+... ...++...+..+...+...|+.++|...
T Consensus 191 ~~~~~~A~~~~~~~~~~---~~~---~~~~~~~~~~l~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 264 (334)
T d1dcea1 191 LHPQPDSGPQGRLPENV---LLK---ELELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCKE 264 (334)
T ss_dssp HSCCCCSSSCCSSCHHH---HHH---HHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCSSSCCCCHHHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHhHHh---HHH---HHHHHHHHHHhcchhHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhhHHHHHHH
Confidence 88877766555444332 111 122334455566667777666654 2223455566667777888999999999
Q ss_pred HHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007517 419 AKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMRKR 459 (600)
Q Consensus 419 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 459 (600)
+.+..+.+|.++.++..++.+|...|++++|.+++++..+.
T Consensus 265 ~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~l 305 (334)
T d1dcea1 265 LQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 305 (334)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHH
T ss_pred HHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998764
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.59 E-value=6.4e-07 Score=83.70 Aligned_cols=188 Identities=10% Similarity=-0.043 Sum_probs=122.1
Q ss_pred HHHHHHHcCCHHHHHhhhhhcCC-----CC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHCC---CCCC--HHHHHH
Q 007517 268 LITMYIKCGELVKGKLIFDNFAS-----KD----IVMWNSIISGYAQYGLGEKSLKVFHEMFSSG---VMPD--DVTLVG 333 (600)
Q Consensus 268 li~~y~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---~~p~--~~t~~~ 333 (600)
....|..+|++++|.+.|.+..+ .+ ..+|+.+...|.+.|++++|++.+++..+.- -.+. ..++..
T Consensus 43 aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 122 (290)
T d1qqea_ 43 AATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFE 122 (290)
T ss_dssp HHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHH
Confidence 34567777777777777766532 11 3577888888888999999988888765421 0111 234555
Q ss_pred HHHHH-hccCCHHHHHHHHHHhHhcC---CCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-------CH-HHH
Q 007517 334 VLSAC-SYTGKVKEGREIFESMKSKY---LVEP-KTEHYACMVDLLGRAGQVEDAMKLIEAM-PFEP-------DA-IIW 399 (600)
Q Consensus 334 ll~a~-~~~g~~~~a~~~~~~~~~~~---~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-------~~-~~~ 399 (600)
+...+ ...|++++|.+.+++..+-. +.++ -..++..+...|.+.|++++|.+.|++. ...| .. ..+
T Consensus 123 l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (290)
T d1qqea_ 123 LGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYF 202 (290)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHH
T ss_pred HHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHH
Confidence 55566 34699999999998775421 1111 1455788899999999999999999886 1111 11 224
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhccCCCCCch-----HHHHHHHHHh--cCCchHHHHHHHH
Q 007517 400 GSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGP-----YILLSNIYAS--QGRFHDVAELRKN 455 (600)
Q Consensus 400 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~-----~~~l~~~~~~--~g~~~~a~~~~~~ 455 (600)
...+..+...|+++.|...+++..+++|..+.+ ...++.+|.. .+.+++|...|+.
T Consensus 203 ~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~ 265 (290)
T d1qqea_ 203 LKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDN 265 (290)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTT
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 445556778899999999999999998864332 3445566654 3457777777654
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.52 E-value=1.8e-06 Score=74.86 Aligned_cols=140 Identities=9% Similarity=-0.091 Sum_probs=94.3
Q ss_pred HHHHHHcCCHHHHHhhhhhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHH
Q 007517 269 ITMYIKCGELVKGKLIFDNFASKDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPD-DVTLVGVLSACSYTGKVKEG 347 (600)
Q Consensus 269 i~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a 347 (600)
...+...|+++.|.+.|.++..++..+|..+...|...|++++|++.|++.++. .|+ ...|..+..++.+.|++++|
T Consensus 12 g~~~~~~~d~~~Al~~~~~i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~l--dp~~~~a~~~~g~~~~~~g~~~~A 89 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINR--DKHLAVAYFQRGMLYYQTEKYDLA 89 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHH--hhhhhhhHHHHHHHHHhhccHHHH
Confidence 345667788888888888887788888888888888888888888888888764 344 44677777777788888888
Q ss_pred HHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Q 007517 348 REIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAMPFEPD-AIIWGSLLGACRTHMKLDLAEVAAKKLLQLE 426 (600)
Q Consensus 348 ~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 426 (600)
.+.|++..... +++... .|...|. ..+++ ..++..+..++...|++++|...+++++++.
T Consensus 90 ~~~~~kAl~~~--~~n~~~------~~~~~~~-----------~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~ 150 (192)
T d1hh8a_ 90 IKDLKEALIQL--RGNQLI------DYKILGL-----------QFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 150 (192)
T ss_dssp HHHHHHHHHTT--TTCSEE------ECGGGTB-----------CCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhC--ccCchH------HHHHhhh-----------hcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 88877765421 111100 0000000 01111 2345566777888888888888888888888
Q ss_pred CCC
Q 007517 427 PKN 429 (600)
Q Consensus 427 p~~ 429 (600)
|+.
T Consensus 151 ~~~ 153 (192)
T d1hh8a_ 151 SEP 153 (192)
T ss_dssp CSG
T ss_pred CCc
Confidence 765
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.52 E-value=3e-07 Score=80.66 Aligned_cols=96 Identities=9% Similarity=0.059 Sum_probs=52.5
Q ss_pred CChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHH
Q 007517 362 PKTEHYACMVDLLGRAGQVEDAMKLIEAM-PFEP-DAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNI 439 (600)
Q Consensus 362 p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 439 (600)
|+...+...+..|.+.|++++|.+.|++. ...| +...|..+..+|...|+++.|+..++++++++|+++.+|..++.+
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~ 81 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 81 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHH
Confidence 34444444555555555555555555544 2222 344555555555555556666666665555555555555555666
Q ss_pred HHhcCCchHHHHHHHHHH
Q 007517 440 YASQGRFHDVAELRKNMR 457 (600)
Q Consensus 440 ~~~~g~~~~a~~~~~~m~ 457 (600)
|...|++++|...+++..
T Consensus 82 ~~~l~~~~~A~~~~~~al 99 (201)
T d2c2la1 82 QLEMESYDEAIANLQRAY 99 (201)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHH
Confidence 666666666655555544
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.50 E-value=8.3e-07 Score=70.06 Aligned_cols=88 Identities=15% Similarity=0.183 Sum_probs=58.0
Q ss_pred HHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchH
Q 007517 371 VDLLGRAGQVEDAMKLIEAM-PFEP-DAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHD 448 (600)
Q Consensus 371 i~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 448 (600)
...+.+.|++++|...|++. ...| +...|..+..++...|++++|+..++++++++|+++..|..++.+|...|++++
T Consensus 10 g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~ 89 (117)
T d1elwa_ 10 GNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEE 89 (117)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCHHH
Confidence 45556666666666666665 2233 455666666667777777777777777777777776667777777777777777
Q ss_pred HHHHHHHHHh
Q 007517 449 VAELRKNMRK 458 (600)
Q Consensus 449 a~~~~~~m~~ 458 (600)
|...+++..+
T Consensus 90 A~~~~~~a~~ 99 (117)
T d1elwa_ 90 AKRTYEEGLK 99 (117)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHH
Confidence 7777666654
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.47 E-value=1.4e-06 Score=68.67 Aligned_cols=104 Identities=11% Similarity=0.005 Sum_probs=87.4
Q ss_pred HHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHcCCH
Q 007517 335 LSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM-PFE-PDAIIWGSLLGACRTHMKL 412 (600)
Q Consensus 335 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~g~~ 412 (600)
...+...|++++|...|....+.. +.+...|..+..+|.+.|++++|.+.+++. .+. .+...|..+..++...|++
T Consensus 10 g~~~~~~g~~~eAi~~~~~al~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~ 87 (117)
T d1elwa_ 10 GNKALSVGNIDDALQCYSEAIKLD--PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRF 87 (117)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcC--CcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCH
Confidence 445677889999999999888752 456888999999999999999999999887 323 4688899999999999999
Q ss_pred HHHHHHHHHHhccCCCCCchHHHHHHHH
Q 007517 413 DLAEVAAKKLLQLEPKNAGPYILLSNIY 440 (600)
Q Consensus 413 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 440 (600)
++|+..++++++++|+++..+..+.++-
T Consensus 88 ~~A~~~~~~a~~~~p~~~~~~~~l~~l~ 115 (117)
T d1elwa_ 88 EEAKRTYEEGLKHEANNPQLKEGLQNME 115 (117)
T ss_dssp HHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHh
Confidence 9999999999999999987777766653
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.38 E-value=2.5e-06 Score=71.53 Aligned_cols=91 Identities=19% Similarity=0.170 Sum_probs=72.9
Q ss_pred HHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCc
Q 007517 369 CMVDLLGRAGQVEDAMKLIEAM-PFEP-DAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRF 446 (600)
Q Consensus 369 ~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 446 (600)
.....|.+.|++++|...|++. .+.| +...|..+...+...|++++|...++++++++|+++.+|..++.+|...|++
T Consensus 15 ~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~~ 94 (159)
T d1a17a_ 15 TQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKF 94 (159)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCCH
Confidence 3455677888888888888877 3334 5777888888888888888888888888888888888888888888888888
Q ss_pred hHHHHHHHHHHhC
Q 007517 447 HDVAELRKNMRKR 459 (600)
Q Consensus 447 ~~a~~~~~~m~~~ 459 (600)
++|.+.+++..+.
T Consensus 95 ~eA~~~~~~a~~~ 107 (159)
T d1a17a_ 95 RAALRDYETVVKV 107 (159)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc
Confidence 8888888877654
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.37 E-value=7e-07 Score=78.19 Aligned_cols=114 Identities=11% Similarity=-0.098 Sum_probs=90.1
Q ss_pred CCHHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHH
Q 007517 326 PDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM-PFEPD-AIIWGSLL 403 (600)
Q Consensus 326 p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll 403 (600)
|+...+......+...|++++|...|....+.. +.+...|..+..+|.+.|++++|...|++. .+.|+ ...|..+.
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~--p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg 79 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN--PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 79 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHH
Confidence 666667777778888888888888888877642 456788888999999999999999999887 56664 77888899
Q ss_pred HHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHH
Q 007517 404 GACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYA 441 (600)
Q Consensus 404 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 441 (600)
.++...|++++|+..++++++++|++...+...+..+.
T Consensus 80 ~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~l 117 (201)
T d2c2la1 80 QCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSAL 117 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 99999999999999999999988876555444444443
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.35 E-value=1.8e-06 Score=74.93 Aligned_cols=88 Identities=14% Similarity=0.078 Sum_probs=81.7
Q ss_pred HHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHH
Q 007517 371 VDLLGRAGQVEDAMKLIEAMPFEPDAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVA 450 (600)
Q Consensus 371 i~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 450 (600)
...+...|++++|.+.|+++. +|+..+|..+..++...|++++|+..|+++++++|+++..|..++.+|.+.|++++|.
T Consensus 12 g~~~~~~~d~~~Al~~~~~i~-~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~~~A~ 90 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAVQ-DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAI 90 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTSS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhccHHHHH
Confidence 556788999999999999984 6788999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhC
Q 007517 451 ELRKNMRKR 459 (600)
Q Consensus 451 ~~~~~m~~~ 459 (600)
+.+++..+.
T Consensus 91 ~~~~kAl~~ 99 (192)
T d1hh8a_ 91 KDLKEALIQ 99 (192)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 999988754
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.34 E-value=6.6e-07 Score=70.01 Aligned_cols=88 Identities=18% Similarity=0.088 Sum_probs=79.6
Q ss_pred HHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCc
Q 007517 369 CMVDLLGRAGQVEDAMKLIEAM-PFEP-DAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRF 446 (600)
Q Consensus 369 ~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 446 (600)
.+...+.+.|++++|...|++. ...| +...|..+..++...|++++|+..++++++++|+++..+..++.+|...|++
T Consensus 21 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g~~ 100 (112)
T d1hxia_ 21 EEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNA 100 (112)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCCCH
Confidence 4677788999999999999987 3445 5888999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHH
Q 007517 447 HDVAELRKNM 456 (600)
Q Consensus 447 ~~a~~~~~~m 456 (600)
++|.+.+++.
T Consensus 101 ~~A~~~l~~~ 110 (112)
T d1hxia_ 101 NAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998875
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.28 E-value=5.1e-06 Score=69.49 Aligned_cols=116 Identities=7% Similarity=-0.048 Sum_probs=92.3
Q ss_pred HHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCH
Q 007517 335 LSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM-PFEP-DAIIWGSLLGACRTHMKL 412 (600)
Q Consensus 335 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~ 412 (600)
...+.+.|++++|...|++..+.. +.+...|..+...|.+.|++++|.+.|++. .+.| +...|..+..++...|++
T Consensus 17 gn~~~~~~~y~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~~ 94 (159)
T d1a17a_ 17 ANDYFKAKDYENAIKFYSQAIELN--PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKF 94 (159)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHhhhccccc--hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCCH
Confidence 345668889999999998888752 456888899999999999999999999887 3345 567899999999999999
Q ss_pred HHHHHHHHHHhccCCCCCchHHHHHHHH--HhcCCchHHHHH
Q 007517 413 DLAEVAAKKLLQLEPKNAGPYILLSNIY--ASQGRFHDVAEL 452 (600)
Q Consensus 413 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~--~~~g~~~~a~~~ 452 (600)
++|...++++++++|+++..+..+..+. ...+.++++...
T Consensus 95 ~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~ 136 (159)
T d1a17a_ 95 RAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAG 136 (159)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999988777665553 334445555543
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.26 E-value=8.2e-06 Score=69.00 Aligned_cols=63 Identities=11% Similarity=-0.041 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007517 397 IIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMRKR 459 (600)
Q Consensus 397 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 459 (600)
.+|..+..+|.+.|++++|+..++++++++|+++.++..++.+|...|++++|...++...+.
T Consensus 63 ~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 125 (170)
T d1p5qa1 63 ASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL 125 (170)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 346667777888888888888888888888888888888888888888888888888887663
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.26 E-value=3.8e-06 Score=66.41 Aligned_cols=104 Identities=18% Similarity=0.037 Sum_probs=81.6
Q ss_pred HHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCH---HHHHHHHHhC-CCCCCH---HHHHHHHH
Q 007517 332 VGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQV---EDAMKLIEAM-PFEPDA---IIWGSLLG 404 (600)
Q Consensus 332 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~---~~A~~~~~~m-~~~p~~---~~~~~ll~ 404 (600)
..+++.+...+++++|++.|+...... +.++.++..+..++.+.++. ++|.++++++ ...|+. .+|..|..
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~--p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~ 80 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAG--SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAV 80 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS--CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHH
Confidence 356777778889999999999888752 45678888899998876554 5689999886 434433 36888999
Q ss_pred HHHHcCCHHHHHHHHHHHhccCCCCCchHHHHH
Q 007517 405 ACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLS 437 (600)
Q Consensus 405 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 437 (600)
+|...|++++|+..++++++++|++..+...+.
T Consensus 81 ~y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~ 113 (122)
T d1nzna_ 81 GNYRLKEYEKALKYVRGLLQTEPQNNQAKELER 113 (122)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHhCcCCHHHHHHHH
Confidence 999999999999999999999999865544443
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.24 E-value=3.4e-05 Score=71.49 Aligned_cols=22 Identities=14% Similarity=0.004 Sum_probs=12.3
Q ss_pred HHHHHHcCChHHHHHHHHHHHH
Q 007517 199 IKVYERKGYELEVIDLFTLMQK 220 (600)
Q Consensus 199 i~~~~~~g~~~~A~~~~~~m~~ 220 (600)
...|...|++++|++.|.+...
T Consensus 44 a~~y~~~~~~~~A~~~y~kA~~ 65 (290)
T d1qqea_ 44 ATIYRLRKELNLAGDSFLKAAD 65 (290)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHH
T ss_pred HHHHHHCcCHHHHHHHHHHHHH
Confidence 4455556666666666555543
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.15 E-value=1.2e-05 Score=67.97 Aligned_cols=134 Identities=13% Similarity=0.048 Sum_probs=97.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHH
Q 007517 294 VMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDL 373 (600)
Q Consensus 294 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 373 (600)
..+......+.+.|++++|+..|++.+.. -|... +..+.-......+ ...+|+.+..+
T Consensus 14 ~~l~~~G~~~~~~~~~~~Ai~~y~~al~~--~~~~~------------~~~~~~~~~~~~~--------~~~~~~nla~~ 71 (170)
T d1p5qa1 14 TIVKERGTVYFKEGKYKQALLQYKKIVSW--LEYES------------SFSNEEAQKAQAL--------RLASHLNLAMC 71 (170)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH--TTTCC------------CCCSHHHHHHHHH--------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--hhhcc------------ccchHHHhhhchh--------HHHHHHHHHHH
Confidence 34555667788889999999999887753 11100 0000000111111 12457778899
Q ss_pred HhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHH
Q 007517 374 LGRAGQVEDAMKLIEAM-PFEP-DAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDV 449 (600)
Q Consensus 374 ~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 449 (600)
|.+.|++++|...++.. .+.| ++..|..+..++...|++++|...++++++++|+++.....+..+....+...+.
T Consensus 72 y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~ 149 (170)
T d1p5qa1 72 HLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAR 149 (170)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999887 4445 6888999999999999999999999999999999998888888887666555543
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.13 E-value=0.00033 Score=63.53 Aligned_cols=227 Identities=12% Similarity=-0.018 Sum_probs=137.3
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCchhHhhHHHHHhh----hcchHHHHHHHHHHHHcCCCCchhhHH
Q 007517 191 DDATWSGMIKVYERKGYELEVIDLFTLMQKEGVRVNFPSLISVLSVCAS----LASLDHGRQVHAQLVRCQFDVDVYVAS 266 (600)
Q Consensus 191 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 266 (600)
|+..+..+...+.+.+++++|++.|++..+.| |...+..+-..+.. ..+...+...+....+.+
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~--------- 68 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--------- 68 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---------
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---------
Confidence 45566777777777888888888888877665 22222222222222 223333433333333322
Q ss_pred HHHHHHHHcCCHHHHHhhhhhcCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH--Hhc
Q 007517 267 VLITMYIKCGELVKGKLIFDNFASKDIVMWNSIISGYAQ----YGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSA--CSY 340 (600)
Q Consensus 267 ~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a--~~~ 340 (600)
+...+..+...+.. ..+.+.|...+++....|..+....+ ..... ...
T Consensus 69 -------------------------~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~l-~~~~~~~~~~ 122 (265)
T d1ouva_ 69 -------------------------YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASL-GGIYHDGKVV 122 (265)
T ss_dssp -------------------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHH-HHHHHHCSSS
T ss_pred -------------------------ccchhhccccccccccccchhhHHHHHHHhhhhhhhhhhHHHhh-cccccCCCcc
Confidence 33333344333332 34667788888877776532222111 11111 123
Q ss_pred cCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCH
Q 007517 341 TGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGR----AGQVEDAMKLIEAMPFEPDAIIWGSLLGACRT----HMKL 412 (600)
Q Consensus 341 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~----~g~~ 412 (600)
......+...+..... ..+...+..|...|.. ..+...+...++...-..+......|...+.. ..+.
T Consensus 123 ~~~~~~a~~~~~~~~~----~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~A~~~lg~~y~~g~~~~~d~ 198 (265)
T d1ouva_ 123 TRDFKKAVEYFTKACD----LNDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNF 198 (265)
T ss_dssp CCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCH
T ss_pred cchhHHHHHHhhhhhc----ccccchhhhhhhhhccCCCcccccccchhhhhccccccccccccchhhhcccCcccccch
Confidence 4456667777666554 2456667777777765 45677777777765223466666666666655 5689
Q ss_pred HHHHHHHHHHhccCCCCCchHHHHHHHHHh----cCCchHHHHHHHHHHhCCC
Q 007517 413 DLAEVAAKKLLQLEPKNAGPYILLSNIYAS----QGRFHDVAELRKNMRKRNV 461 (600)
Q Consensus 413 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~g~ 461 (600)
+.|...++++.+.+ ++..+..|+.+|.. ..+.++|.++|++..+.|-
T Consensus 199 ~~A~~~~~~aa~~g--~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~ 249 (265)
T d1ouva_ 199 KEALARYSKACELE--NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA 249 (265)
T ss_dssp HHHHHHHHHHHHTT--CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred hhhhhhHhhhhccc--CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcC
Confidence 99999999998875 45688889999976 4489999999999988763
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.12 E-value=2.4e-05 Score=64.67 Aligned_cols=63 Identities=14% Similarity=0.009 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007517 397 IIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMRKR 459 (600)
Q Consensus 397 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 459 (600)
.+|..+..+|.+.|++++|+..++++++++|+++.+|..++.+|...|++++|...++...+.
T Consensus 68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l 130 (153)
T d2fbna1 68 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASL 130 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHh
Confidence 456778888889999999999999999999999899999999999999999999999887653
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.05 E-value=1.9e-05 Score=62.98 Aligned_cols=92 Identities=10% Similarity=0.138 Sum_probs=76.2
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCc-------hHHHHH
Q 007517 367 YACMVDLLGRAGQVEDAMKLIEAM-PFEP-DAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAG-------PYILLS 437 (600)
Q Consensus 367 ~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~-------~~~~l~ 437 (600)
+..+...|.+.|++++|.+.|++. .+.| +...|..+..+|.+.|+++.|+..++++++++|+++. +|..++
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg 86 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG 86 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHH
Confidence 445778889999999999999877 3344 5788999999999999999999999999999888765 455567
Q ss_pred HHHHhcCCchHHHHHHHHHHh
Q 007517 438 NIYASQGRFHDVAELRKNMRK 458 (600)
Q Consensus 438 ~~~~~~g~~~~a~~~~~~m~~ 458 (600)
..+...+++++|.+.+++...
T Consensus 87 ~~~~~~~~~~~A~~~~~kal~ 107 (128)
T d1elra_ 87 NSYFKEEKYKDAIHFYNKSLA 107 (128)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHh
Confidence 778888999999999987653
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.05 E-value=1e-05 Score=63.82 Aligned_cols=92 Identities=8% Similarity=-0.039 Sum_probs=76.6
Q ss_pred HHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcC---CHHHHHHHHHHHhccCCCC--CchHHHHHHHH
Q 007517 368 ACMVDLLGRAGQVEDAMKLIEAM-PFEP-DAIIWGSLLGACRTHM---KLDLAEVAAKKLLQLEPKN--AGPYILLSNIY 440 (600)
Q Consensus 368 ~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~ 440 (600)
..++..+...+++++|.+.|++. ...| ++.++..+..++.+.+ +.++|+.+++++++.+|++ +.++..|+.+|
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y 82 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN 82 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence 45778888999999999999988 3334 6788888888887644 5567999999999988765 34788999999
Q ss_pred HhcCCchHHHHHHHHHHhC
Q 007517 441 ASQGRFHDVAELRKNMRKR 459 (600)
Q Consensus 441 ~~~g~~~~a~~~~~~m~~~ 459 (600)
...|++++|.+.++++.+.
T Consensus 83 ~~~g~~~~A~~~~~~aL~~ 101 (122)
T d1nzna_ 83 YRLKEYEKALKYVRGLLQT 101 (122)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHHh
Confidence 9999999999999999874
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.03 E-value=0.0015 Score=60.68 Aligned_cols=208 Identities=8% Similarity=0.012 Sum_probs=118.4
Q ss_pred CCCcchHHHHHHHHHhCCChHHHHHHHhhCCCCCcchHHHHHHHHHcCCCHHHHHHHHccCCCCCcchHHHHHHHHHhcC
Q 007517 3 ERNVVSWTAMVRGYVEEGMITEAGTLFWQMPEKNVVSWTVMLGGFIRDSRIDDARRLFDMMPEKDVVAQTNMVLGYCQDG 82 (600)
Q Consensus 3 ~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g 82 (600)
.||..--..+..-|-+.|.++.|..+|..+. -|..++..+.+.+++..|..++.+. .+..+|..+...+.+..
T Consensus 11 ~~n~~d~~~i~~~c~~~~lye~A~~lY~~~~-----d~~rl~~~~v~l~~~~~avd~~~k~--~~~~~~k~~~~~l~~~~ 83 (336)
T d1b89a_ 11 GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS-----NFGRLASTLVHLGEYQAAVDGARKA--NSTRTWKEVCFACVDGK 83 (336)
T ss_dssp CC----------------CTTTHHHHHHHTT-----CHHHHHHHHHTTTCHHHHHHHHHHH--TCHHHHHHHHHHHHHTT
T ss_pred CCCcCCHHHHHHHHHHCCCHHHHHHHHHhCC-----CHHHHHHHHHhhccHHHHHHHHHHc--CCHHHHHHHHHHHHhCc
Confidence 4555555667777888999999999998764 3777888888899999988887765 35668888888888776
Q ss_pred ChHHHHHHHhhCCCCCcccHHHHHHHHHhCCChHHHHHHHhhcCC---CCcchHHHHHHHHhcCCChHHHHHHHhhCC--
Q 007517 83 RVDEGREIFDEMPKKNVISWTTMISGYVNNNRIDVARKLFEVMPE---KNEVSWTAMLMGYTQCGRIQDAWELFKAMP-- 157 (600)
Q Consensus 83 ~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~-- 157 (600)
...-|.- .......+......++..|-..|.+++...+++.... ++...++.++..+++.+. ++-.+.+....
T Consensus 84 e~~la~i-~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak~~~-~kl~e~l~~~s~~ 161 (336)
T d1b89a_ 84 EFRLAQM-CGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKP-QKMREHLELFWSR 161 (336)
T ss_dssp CHHHHHH-TTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCH-HHHHHHHHHHSTT
T ss_pred HHHHHHH-HHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCCccchHHHHHHHHHHHHhCh-HHHHHHHHhcccc
Confidence 6655432 2222223444556788888889999998888886544 555677788888877653 33333333221
Q ss_pred ---------CCCccchhHHHHHHHhcCCHHHHHHHHHhcccCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Q 007517 158 ---------MKSVVASNSMILGLGQNGEVQKARVVFDQMREKDDATWSGMIKVYERKGYELEVIDLFTLMQK 220 (600)
Q Consensus 158 ---------~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 220 (600)
......|.-++..|.+.|++++|..+.-.-+ ++.......+..+.+..+++...++.....+
T Consensus 162 y~~~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~~i~~~-~~~~~~~~f~e~~~k~~N~e~~~~~i~~yL~ 232 (336)
T d1b89a_ 162 VNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHP-TDAWKEGQFKDIITKVANVELYYRAIQFYLE 232 (336)
T ss_dssp SCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHST-TTTCCHHHHHHHHHHCSSTHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHHHHcc-hhhhhHHHHHHHHHccCChHHHHHHHHHHHH
Confidence 1112234455566666666666554432211 1222334455566666666655555444433
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.96 E-value=7.3e-05 Score=62.75 Aligned_cols=62 Identities=11% Similarity=-0.023 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007517 398 IWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMRKR 459 (600)
Q Consensus 398 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 459 (600)
+|..+..++...|++++|+..++++++++|+++.+|..++.+|...|++++|.+.+++..+.
T Consensus 66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l 127 (168)
T d1kt1a1 66 AFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV 127 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred HHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 35556666777788888888888888888888778888888888888888888888877653
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.95 E-value=3.8e-05 Score=64.70 Aligned_cols=65 Identities=8% Similarity=-0.028 Sum_probs=56.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007517 395 DAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMRKR 459 (600)
Q Consensus 395 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 459 (600)
+...|..+..++.+.|++++|+..++++++++|+++.+|..++.+|...|++++|.+.+++..+.
T Consensus 76 ~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l 140 (169)
T d1ihga1 76 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI 140 (169)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHh
Confidence 34567777888888999999999999999999999999999999999999999999999988763
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.93 E-value=0.0024 Score=59.25 Aligned_cols=279 Identities=10% Similarity=0.060 Sum_probs=140.5
Q ss_pred CCcchHHHHHHHHHhcCChHHHHHHHhhCCCCCcccHHHHHHHHHhCCChHHHHHHHhhcCCCCcchHHHHHHHHhcCCC
Q 007517 66 KDVVAQTNMVLGYCQDGRVDEGREIFDEMPKKNVISWTTMISGYVNNNRIDVARKLFEVMPEKNEVSWTAMLMGYTQCGR 145 (600)
Q Consensus 66 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~p~~~t~~~ll~~~~~~g~ 145 (600)
+|..--......|.+.|.++.|..+|..+.. |..++..+.+.+++..|.+++... .+..+|..+..+|.....
T Consensus 12 ~n~~d~~~i~~~c~~~~lye~A~~lY~~~~d-----~~rl~~~~v~l~~~~~avd~~~k~--~~~~~~k~~~~~l~~~~e 84 (336)
T d1b89a_ 12 PNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN-----FGRLASTLVHLGEYQAAVDGARKA--NSTRTWKEVCFACVDGKE 84 (336)
T ss_dssp C----------------CTTTHHHHHHHTTC-----HHHHHHHHHTTTCHHHHHHHHHHH--TCHHHHHHHHHHHHHTTC
T ss_pred CCcCCHHHHHHHHHHCCCHHHHHHHHHhCCC-----HHHHHHHHHhhccHHHHHHHHHHc--CCHHHHHHHHHHHHhCcH
Confidence 3333334455556666777777777765543 666777777777777777776544 344566667777766655
Q ss_pred hHHHHHHHhhCCCCCccchhHHHHHHHhcCCHHHHHHHHHhcc---cCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcC
Q 007517 146 IQDAWELFKAMPMKSVVASNSMILGLGQNGEVQKARVVFDQMR---EKDDATWSGMIKVYERKGYELEVIDLFTLMQKEG 222 (600)
Q Consensus 146 ~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 222 (600)
...+.. .......++.-...++..|-..|..++...+++... ..+...++.++..|++.+ +++.++.++.. +
T Consensus 85 ~~la~i-~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak~~-~~kl~e~l~~~---s 159 (336)
T d1b89a_ 85 FRLAQM-CGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFK-PQKMREHLELF---W 159 (336)
T ss_dssp HHHHHH-TTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTC-HHHHHHHHHHH---S
T ss_pred HHHHHH-HHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCCccchHHHHHHHHHHHHhC-hHHHHHHHHhc---c
Confidence 544322 121122233334567777888888888888887653 235666788888887764 44444444332 1
Q ss_pred CccCchhHhhHHHHHhhhcchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHhhhhhcCCCCHHHHHHHHHH
Q 007517 223 VRVNFPSLISVLSVCASLASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFASKDIVMWNSIISG 302 (600)
Q Consensus 223 ~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~ 302 (600)
+......++..|.+.+-+ .-++-.|.+.|++++|..+.-.-.. +.......+..
T Consensus 160 ---~~y~~~k~~~~c~~~~l~----------------------~elv~Ly~~~~~~~~A~~~~i~~~~-~~~~~~~f~e~ 213 (336)
T d1b89a_ 160 ---SRVNIPKVLRAAEQAHLW----------------------AELVFLYDKYEEYDNAIITMMNHPT-DAWKEGQFKDI 213 (336)
T ss_dssp ---TTSCHHHHHHHHHTTTCH----------------------HHHHHHHHHTTCHHHHHHHHHHSTT-TTCCHHHHHHH
T ss_pred ---ccCCHHHHHHHHHHcCCh----------------------HHHHHHHHhcCCHHHHHHHHHHcch-hhhhHHHHHHH
Confidence 122233344455443333 3455666677777766554422111 11112233444
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-------------HhccCCHHHHHHHHHHhHhcCCCCCChHHHHH
Q 007517 303 YAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSA-------------CSYTGKVKEGREIFESMKSKYLVEPKTEHYAC 369 (600)
Q Consensus 303 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a-------------~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ 369 (600)
+.+.++++...+......+. .|+. .+.+|.. +.+.+++.....+++..... .+..+.++
T Consensus 214 ~~k~~N~e~~~~~i~~yL~~--~p~~--i~~lL~~v~~~~d~~r~V~~~~k~~~l~li~p~Le~v~~~----n~~~vn~a 285 (336)
T d1b89a_ 214 ITKVANVELYYRAIQFYLEF--KPLL--LNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNH----NNKSVNES 285 (336)
T ss_dssp HHHCSSTHHHHHHHHHHHHH--CGGG--HHHHHHHHGGGCCHHHHHHHHHHTTCTTTTHHHHHHHHTT----CCHHHHHH
T ss_pred HHccCChHHHHHHHHHHHHc--CHHH--HHHHHHHhccCCCHHHHHHHHHhcCCcHHHHHHHHHHHHc----ChHHHHHH
Confidence 55555555444444433332 2322 2233333 33444444445555544331 23456777
Q ss_pred HHHHHhhcCCHHHHHHHHHhC
Q 007517 370 MVDLLGRAGQVEDAMKLIEAM 390 (600)
Q Consensus 370 li~~~~~~g~~~~A~~~~~~m 390 (600)
+.+.|...++++.-.+.++.-
T Consensus 286 l~~lyie~~d~~~l~~~i~~~ 306 (336)
T d1b89a_ 286 LNNLFITEEDYQALRTSIDAY 306 (336)
T ss_dssp HHHHHHHTTCHHHHHHHHHHC
T ss_pred HHHHHhCcchhHHHHHHHHHh
Confidence 777777777766655555543
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.91 E-value=6.6e-05 Score=63.06 Aligned_cols=143 Identities=13% Similarity=0.030 Sum_probs=99.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHH
Q 007517 294 VMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDL 373 (600)
Q Consensus 294 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 373 (600)
..+.-....+.+.|++++|+..|++.... .|. . .....+. ......+ ....|+.+..+
T Consensus 16 ~~~~e~G~~~~~~~~~~~A~~~Y~~al~~--~~~----------~-~~~~~~~-~~~~~~~--------~~~~~~Nla~~ 73 (168)
T d1kt1a1 16 AIVKEKGTVYFKGGKYVQAVIQYGKIVSW--LEM----------E-YGLSEKE-SKASESF--------LLAAFLNLAMC 73 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTT----------C-CSCCHHH-HHHHHHH--------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--HHH----------h-hccchhh-hhhcchh--------HHHHHHhHHHH
Confidence 45556667788888888888888775531 000 0 0000000 0011111 13457778889
Q ss_pred HhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCch-HHH
Q 007517 374 LGRAGQVEDAMKLIEAM-PFE-PDAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFH-DVA 450 (600)
Q Consensus 374 ~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~-~a~ 450 (600)
|.+.|++++|...+++. .+. .+...|..+..++...|++++|...++++++++|+++.....+..+....+... ...
T Consensus 74 ~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~e~~k 153 (168)
T d1kt1a1 74 YLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAKEHNERDR 153 (168)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHH
Confidence 99999999999999887 333 468889999999999999999999999999999999888888888876666554 345
Q ss_pred HHHHHHHh
Q 007517 451 ELRKNMRK 458 (600)
Q Consensus 451 ~~~~~m~~ 458 (600)
+++..|-+
T Consensus 154 k~~~~~f~ 161 (168)
T d1kt1a1 154 RTYANMFK 161 (168)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 55555543
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.90 E-value=4.2e-05 Score=64.40 Aligned_cols=127 Identities=10% Similarity=0.035 Sum_probs=90.9
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhh
Q 007517 297 NSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGR 376 (600)
Q Consensus 297 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~ 376 (600)
......+...|++++|++.|.++.+. +............ ... -+.....|..+..+|.+
T Consensus 31 ~~~~~~~~~~~~y~~Ai~~y~~al~~------------~~~~~~~~~~~~~------~~~---~~~~~~~~~nla~~~~~ 89 (169)
T d1ihga1 31 KNIGNTFFKSQNWEMAIKKYTKVLRY------------VEGSRAAAEDADG------AKL---QPVALSCVLNIGACKLK 89 (169)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH------------HHHHHHHSCHHHH------GGG---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh------------hhhhhhhhhhHHH------HHh---ChhhHHHHHHHHHHHHh
Confidence 34455677788888888888876531 0000000011110 000 02245678888999999
Q ss_pred cCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcC
Q 007517 377 AGQVEDAMKLIEAM-PFEP-DAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQG 444 (600)
Q Consensus 377 ~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 444 (600)
.|++++|+..+++. .+.| +...|..+..++...|+++.|+..++++++++|+++..+..+..+.....
T Consensus 90 ~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l~ 159 (169)
T d1ihga1 90 MSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIK 159 (169)
T ss_dssp TTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred hcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 99999999999987 5555 57789999999999999999999999999999999888777777665443
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=97.81 E-value=0.0061 Score=54.65 Aligned_cols=95 Identities=4% Similarity=-0.035 Sum_probs=66.3
Q ss_pred CccchhHHHHHHHhcCCHHHHHHHHHhcccC-ChhhHHHHHHHHHH----cCChHHHHHHHHHHHHcCCccCchhHhhHH
Q 007517 160 SVVASNSMILGLGQNGEVQKARVVFDQMREK-DDATWSGMIKVYER----KGYELEVIDLFTLMQKEGVRVNFPSLISVL 234 (600)
Q Consensus 160 ~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~-~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 234 (600)
|+..+..|...+.+.+++++|.+.|++..+. |..++-.|...|.. ..++..|...+......+.+ .....+.
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~~~---~a~~~l~ 77 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYS---NGCHLLG 77 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH---HHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccccc---chhhccc
Confidence 3445667777888999999999999998754 67777777777776 56788898888887776522 2222222
Q ss_pred HHHh----hhcchHHHHHHHHHHHHcC
Q 007517 235 SVCA----SLASLDHGRQVHAQLVRCQ 257 (600)
Q Consensus 235 ~~~~----~~~~~~~a~~~~~~~~~~~ 257 (600)
..+. ...+.+.+...+....+.|
T Consensus 78 ~~~~~~~~~~~~~~~a~~~~~~a~~~g 104 (265)
T d1ouva_ 78 NLYYSGQGVSQNTNKALQYYSKACDLK 104 (265)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred cccccccccchhhHHHHHHHhhhhhhh
Confidence 2222 2456777777787777766
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.77 E-value=4e-06 Score=84.55 Aligned_cols=108 Identities=7% Similarity=-0.112 Sum_probs=45.4
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHH
Q 007517 330 TLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM-PFEPD-AIIWGSLLGACR 407 (600)
Q Consensus 330 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~ 407 (600)
.+..+...+...|+.++|...+...... .| ...+..+.+++...|++++|...|++. .+.|+ ...|+.|...+.
T Consensus 122 ~~~~lg~~~~~~~~~~~A~~~~~~al~~---~~-~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~ 197 (497)
T d1ya0a1 122 KSSQLGIISNKQTHTSAIVKPQSSSCSY---IC-QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILAS 197 (497)
T ss_dssp ---------------------CCHHHHH---HH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHH
T ss_pred HHHHhHHHHHhCCCHHHHHHHHHHHhCC---CH-HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHH
Confidence 3344444444555555555544433321 11 234455555555566666666555554 23332 445555555555
Q ss_pred HcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHH
Q 007517 408 THMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYA 441 (600)
Q Consensus 408 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 441 (600)
..|+..+|...|.+++..+|+.+.++..|..++.
T Consensus 198 ~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~ 231 (497)
T d1ya0a1 198 SKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALS 231 (497)
T ss_dssp HTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 5666666666666666655555555555555543
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.74 E-value=0.00024 Score=58.35 Aligned_cols=127 Identities=9% Similarity=-0.091 Sum_probs=92.3
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHH
Q 007517 293 IVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVD 372 (600)
Q Consensus 293 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 372 (600)
...+......+.+.|++.+|+..|.+....- |... ...-.... .... .....+|+.+..
T Consensus 17 a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~--~~~~-----------~~~~~~~~---~~~~-----~~~~~~~~Nla~ 75 (153)
T d2fbna1 17 AFDIKEEGNEFFKKNEINEAIVKYKEALDFF--IHTE-----------EWDDQILL---DKKK-----NIEISCNLNLAT 75 (153)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--TTCT-----------TCCCHHHH---HHHH-----HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--cchh-----------hhhhHHHH---Hhhh-----hHHHHHHhhHHH
Confidence 3567777788889999999999999887631 1100 00000000 0000 112357788999
Q ss_pred HHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHH
Q 007517 373 LLGRAGQVEDAMKLIEAM-PFEP-DAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIY 440 (600)
Q Consensus 373 ~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 440 (600)
.|.+.|++++|++.+++. .+.| +...|..+..++...|+++.|...|+++++++|+++.....+..+.
T Consensus 76 ~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~ 145 (153)
T d2fbna1 76 CYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCV 145 (153)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 999999999999999987 4445 6889999999999999999999999999999999977666655443
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.73 E-value=8.3e-05 Score=62.95 Aligned_cols=110 Identities=10% Similarity=0.037 Sum_probs=78.9
Q ss_pred HHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCH-HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHH
Q 007517 336 SACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQV-EDAMKLIEAMPFEPDAIIWGSLLGACRTHMKLDL 414 (600)
Q Consensus 336 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~ 414 (600)
......|++++|.+.|.....-+.=.+-.. +. .+.+ .....-++. .....+..+...+...|++++
T Consensus 19 ~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~--------~~-~~~w~~~~r~~l~~----~~~~a~~~la~~~~~~g~~~~ 85 (179)
T d2ff4a2 19 VHAAAAGRFEQASRHLSAALREWRGPVLDD--------LR-DFQFVEPFATALVE----DKVLAHTAKAEAEIACGRASA 85 (179)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCCSSTTGG--------GT-TSTTHHHHHHHHHH----HHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCccccccc--------Cc-chHHHHHHHHHHHH----HHHHHHHHHHHHHHHCCCchH
Confidence 456778888888888888776431111000 00 0111 111111111 124567888999999999999
Q ss_pred HHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007517 415 AEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMRK 458 (600)
Q Consensus 415 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 458 (600)
|...++++++.+|.+...|..++.+|...|++++|.+.|+++.+
T Consensus 86 Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~ 129 (179)
T d2ff4a2 86 VIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 129 (179)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998854
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=97.63 E-value=0.00022 Score=55.02 Aligned_cols=85 Identities=6% Similarity=-0.069 Sum_probs=40.9
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcC
Q 007517 300 ISGYAQYGLGEKSLKVFHEMFSSGVMPD-DVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAG 378 (600)
Q Consensus 300 i~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 378 (600)
...+.+.|++++|+..|++.... .|+ ...|..+..++.+.|++++|...|+...+.. +.+...+..+...|...|
T Consensus 23 g~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~a~~~la~~y~~~g 98 (112)
T d1hxia_ 23 GLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD--PKDIAVHAALAVSHTNEH 98 (112)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHhhhccc--ccccchhhhhhhhhhhhhhhHHHhhcccccccccc--cccccchHHHHHHHHHCC
Confidence 33444555555555555555443 232 3344444445555555555555555544421 223444555555555555
Q ss_pred CHHHHHHHHH
Q 007517 379 QVEDAMKLIE 388 (600)
Q Consensus 379 ~~~~A~~~~~ 388 (600)
++++|.+.++
T Consensus 99 ~~~~A~~~l~ 108 (112)
T d1hxia_ 99 NANAALASLR 108 (112)
T ss_dssp HHHHHHHHHH
T ss_pred CHHHHHHHHH
Confidence 5555555444
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.57 E-value=8.2e-05 Score=60.61 Aligned_cols=74 Identities=16% Similarity=0.179 Sum_probs=45.1
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCch
Q 007517 381 EDAMKLIEAM-PFEP-DAIIWGSLLGACRTHM-----------KLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFH 447 (600)
Q Consensus 381 ~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g-----------~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 447 (600)
++|.+.|++. .+.| +..+|..+..+|...| +++.|...|+++++++|++...+..|... .
T Consensus 58 ~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~-------~ 130 (145)
T d1zu2a1 58 QEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMT-------A 130 (145)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH-------H
T ss_pred HHHHHHHHHHHHhcchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHH-------H
Confidence 4444444444 2223 3444555554444332 46889999999999999996555555444 4
Q ss_pred HHHHHHHHHHhCCC
Q 007517 448 DVAELRKNMRKRNV 461 (600)
Q Consensus 448 ~a~~~~~~m~~~g~ 461 (600)
+|.+++.+..+.|+
T Consensus 131 ka~~~~~e~~k~~~ 144 (145)
T d1zu2a1 131 KAPQLHAEAYKQGL 144 (145)
T ss_dssp THHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHHhc
Confidence 66677777666654
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.42 E-value=0.00014 Score=72.86 Aligned_cols=223 Identities=9% Similarity=-0.116 Sum_probs=109.3
Q ss_pred HHHHHHhhCC---CCCccchhHHHHHHHhcCCHHHHHHHHHhcccCChhhHHH-HHHHHHHcCChHHHHHHHHHHHHcCC
Q 007517 148 DAWELFKAMP---MKSVVASNSMILGLGQNGEVQKARVVFDQMREKDDATWSG-MIKVYERKGYELEVIDLFTLMQKEGV 223 (600)
Q Consensus 148 ~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~-li~~~~~~g~~~~A~~~~~~m~~~g~ 223 (600)
+|.+.++++. +.....+..+..+|...|++++| |+++...|+..... -+....-+..+..+.+.++...+...
T Consensus 4 eA~q~~~qA~~l~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~dp~~a~~~~~e~~Lw~~~y~~~ie~~r~~~k~~~ 80 (497)
T d1ya0a1 4 QSAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDL---YQKMLVTDLEYALDKKVEQDLWNHAFKNQITTLQGQAKNRA 80 (497)
T ss_dssp HHHHHHHHHHHHHGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHHCHHHHHHHTHHHHHHHHHTHHHHHHHHHHHSCSS
T ss_pred HHHHHHHHHHHcCCCCHHHHhhHHHHHHHHchHHHH---HHHHHHcChhhHHHHhHHHHHHHHHHHHHHHHHHHhccccc
Confidence 3555565555 33445555566666666776665 44443222211000 00011111124456666666655443
Q ss_pred ccCchhHhhHHHHH--hhhcchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHhhhhhcCCCC-HHHHHHHH
Q 007517 224 RVNFPSLISVLSVC--ASLASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFASKD-IVMWNSII 300 (600)
Q Consensus 224 ~p~~~t~~~ll~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~-~~~~~~li 300 (600)
.++..-....+..+ ...+.++.+...+....+.. +++...+..+...+.+.|+.++|...+.....++ ..++..+.
T Consensus 81 ~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~LG 159 (497)
T d1ya0a1 81 NPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVD-LPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYICQHCLVHLG 159 (497)
T ss_dssp CTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC--------------------------------CCHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-hhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 34433322222222 12233444443333322222 3345566677777888888888887776654433 24667778
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcC
Q 007517 301 SGYAQYGLGEKSLKVFHEMFSSGVMPDD-VTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAG 378 (600)
Q Consensus 301 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 378 (600)
..+...|++++|+..|++..+. .|+. ..|+.+...+...|+..+|...|.+.... -+|-+..+..|...+.+..
T Consensus 160 ~l~~~~~~~~~A~~~y~~A~~l--~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~--~~~~~~a~~nL~~~~~~~~ 234 (497)
T d1ya0a1 160 DIARYRNQTSQAESYYRHAAQL--VPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAV--KFPFPAASTNLQKALSKAL 234 (497)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSS--SBCCHHHHHHHHHHHHHHT
T ss_pred HHHHHcccHHHHHHHHHHHHHH--CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCCCHHHHHHHHHHHHHhh
Confidence 8888888889999888888774 5554 57888888888888888888888887753 2566778888887776543
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.41 E-value=0.0003 Score=57.99 Aligned_cols=94 Identities=17% Similarity=0.058 Sum_probs=67.6
Q ss_pred HHHHH--HHHHhhcCCHHHHHHHHHhC----CCCCC----------HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC--
Q 007517 366 HYACM--VDLLGRAGQVEDAMKLIEAM----PFEPD----------AIIWGSLLGACRTHMKLDLAEVAAKKLLQLEP-- 427 (600)
Q Consensus 366 ~~~~l--i~~~~~~g~~~~A~~~~~~m----~~~p~----------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p-- 427 (600)
.|..+ ...+.+.|++++|.+.|++. +..|+ ...|+.+..++...|++++|...+++++++.|
T Consensus 9 a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~ 88 (156)
T d2hr2a1 9 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 88 (156)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccccc
Confidence 34444 44555667777777777665 21221 35688888889999999999998888886533
Q ss_pred -----CC----CchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007517 428 -----KN----AGPYILLSNIYASQGRFHDVAELRKNMRKR 459 (600)
Q Consensus 428 -----~~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 459 (600)
+. ...+..++.+|...|++++|.+.|++..+.
T Consensus 89 ~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l 129 (156)
T d2hr2a1 89 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 129 (156)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 21 225778899999999999999999998753
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.37 E-value=0.00088 Score=52.86 Aligned_cols=90 Identities=10% Similarity=-0.015 Sum_probs=44.5
Q ss_pred HHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC----CCCCC-----HHHHHHHHHHHH
Q 007517 337 ACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM----PFEPD-----AIIWGSLLGACR 407 (600)
Q Consensus 337 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~-----~~~~~~ll~~~~ 407 (600)
.+...|++++|.+.|....+.. +.+...+..+..+|.+.|++++|.+.++++ +-.+. ..+|..+...+.
T Consensus 13 ~~~~~~~y~~Ai~~y~~al~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~~~~ 90 (128)
T d1elra_ 13 DAYKKKDFDTALKHYDKAKELD--PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYF 90 (128)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC--cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444321 223444555555555555555555555443 10111 224455555666
Q ss_pred HcCCHHHHHHHHHHHhccCCC
Q 007517 408 THMKLDLAEVAAKKLLQLEPK 428 (600)
Q Consensus 408 ~~g~~~~a~~~~~~~~~~~p~ 428 (600)
..++++.|...+++.+..+|+
T Consensus 91 ~~~~~~~A~~~~~kal~~~~~ 111 (128)
T d1elra_ 91 KEEKYKDAIHFYNKSLAEHRT 111 (128)
T ss_dssp HTTCHHHHHHHHHHHHHHCCC
T ss_pred HhCCHHHHHHHHHHHHhcCCC
Confidence 666667777776666665553
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.31 E-value=0.00046 Score=51.20 Aligned_cols=74 Identities=20% Similarity=0.090 Sum_probs=56.7
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHhC----C----CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHH
Q 007517 365 EHYACMVDLLGRAGQVEDAMKLIEAM----P----FEPD-AIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYIL 435 (600)
Q Consensus 365 ~~~~~li~~~~~~g~~~~A~~~~~~m----~----~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 435 (600)
..+-.+...+.+.|++++|...|++. + ..++ ..++..|..++.+.|++++|...++++++++|+++.++..
T Consensus 6 ddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~N 85 (95)
T d1tjca_ 6 EDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGN 85 (95)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHHH
Confidence 34445677777888888887777655 1 1223 5678889999999999999999999999999999877666
Q ss_pred HHH
Q 007517 436 LSN 438 (600)
Q Consensus 436 l~~ 438 (600)
+..
T Consensus 86 l~~ 88 (95)
T d1tjca_ 86 LKY 88 (95)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.28 E-value=6.9e-05 Score=61.07 Aligned_cols=49 Identities=16% Similarity=0.186 Sum_probs=41.6
Q ss_pred CCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCC-----------chHHHHHHHHHHh
Q 007517 410 MKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGR-----------FHDVAELRKNMRK 458 (600)
Q Consensus 410 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~-----------~~~a~~~~~~m~~ 458 (600)
+.+++|+..++++++++|+++.+|..++.+|...|+ +++|.+.|++..+
T Consensus 55 ~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~ 114 (145)
T d1zu2a1 55 QMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVD 114 (145)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccc
Confidence 446789999999999999999999999999988764 5778888777765
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.17 E-value=0.00061 Score=61.38 Aligned_cols=123 Identities=11% Similarity=0.012 Sum_probs=63.2
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCC-hHHHHHHHHHHhhcCCHHHH
Q 007517 305 QYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPK-TEHYACMVDLLGRAGQVEDA 383 (600)
Q Consensus 305 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A 383 (600)
+.|++++|+..+++.++.. +-|...+..+...++..|++++|.+.++...+. .|+ ...+..+..++...+..+++
T Consensus 8 ~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l---~P~~~~~~~~l~~ll~a~~~~~~a 83 (264)
T d1zbpa1 8 SEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL---FPEYLPGASQLRHLVKAAQARKDF 83 (264)
T ss_dssp TTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHhccccHHH
Confidence 4566666666666666541 223345555666666666666666666666553 233 33444444444444444433
Q ss_pred HHHHHhC--CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCc
Q 007517 384 MKLIEAM--PFEPD-AIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAG 431 (600)
Q Consensus 384 ~~~~~~m--~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 431 (600)
..-.... ...|+ ...+......+...|+.++|...++++.+..|..+.
T Consensus 84 ~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~ 134 (264)
T d1zbpa1 84 AQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGF 134 (264)
T ss_dssp TTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCE
T ss_pred HHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCc
Confidence 2222111 11221 222333344455667777777777776666666543
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.01 E-value=0.0019 Score=47.73 Aligned_cols=64 Identities=17% Similarity=-0.001 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC-------CchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007517 396 AIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKN-------AGPYILLSNIYASQGRFHDVAELRKNMRKR 459 (600)
Q Consensus 396 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~-------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 459 (600)
...+-.+...+.+.|+++.|...+++++++.|.+ +.++..|+.+|.+.|++++|.+.+++..+.
T Consensus 5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l 75 (95)
T d1tjca_ 5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (95)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHh
Confidence 3445567888999999999999999999865443 346888999999999999999999998764
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.99 E-value=0.0051 Score=51.47 Aligned_cols=58 Identities=16% Similarity=0.136 Sum_probs=37.3
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 007517 365 EHYACMVDLLGRAGQVEDAMKLIEAM-PFEP-DAIIWGSLLGACRTHMKLDLAEVAAKKL 422 (600)
Q Consensus 365 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 422 (600)
..+..++..+.+.|++++|...++++ ...| +...|..++.++...|+.++|++.|+++
T Consensus 68 ~a~~~la~~~~~~g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~ 127 (179)
T d2ff4a2 68 LAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRV 127 (179)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 44555666666677777777666665 2233 5666677777777777777777666665
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=96.90 E-value=0.003 Score=51.60 Aligned_cols=65 Identities=14% Similarity=-0.005 Sum_probs=44.9
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHhC--------CCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC
Q 007517 365 EHYACMVDLLGRAGQVEDAMKLIEAM--------PFEPD-----AIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKN 429 (600)
Q Consensus 365 ~~~~~li~~~~~~g~~~~A~~~~~~m--------~~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 429 (600)
..|+.+..+|.+.|++++|.+-+++. ...++ ...+..+..+|...|++++|...|++++++.|..
T Consensus 56 ~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~ 133 (156)
T d2hr2a1 56 FCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEER 133 (156)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHh
Confidence 34566666677777777666665543 11222 2246777888999999999999999999876543
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=96.88 E-value=0.00035 Score=63.04 Aligned_cols=119 Identities=13% Similarity=0.076 Sum_probs=85.3
Q ss_pred hccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHHHH
Q 007517 339 SYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM-PFEPD-AIIWGSLLGACRTHMKLDLAE 416 (600)
Q Consensus 339 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~ 416 (600)
...|++++|...+++..+.. +.+...+..++..|.+.|++++|.+.++.. ...|+ ...+..+...+...+..+++.
T Consensus 7 L~~G~l~eAl~~l~~al~~~--P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a~ 84 (264)
T d1zbpa1 7 LSEGQLQQALELLIEAIKAS--PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDFA 84 (264)
T ss_dssp TTTTCHHHHHHHHHHHHHTC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHHHH
Confidence 46799999999999998852 567899999999999999999999999988 44565 455555555544433333322
Q ss_pred HHHHHHhc-cCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007517 417 VAAKKLLQ-LEPKNAGPYILLSNIYASQGRFHDVAELRKNMRKR 459 (600)
Q Consensus 417 ~~~~~~~~-~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 459 (600)
........ .+|+....+...+..+...|+.++|.+.+++..+.
T Consensus 85 ~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~ 128 (264)
T d1zbpa1 85 QGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 128 (264)
T ss_dssp TSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 22111111 23444455666788899999999999999998764
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=96.87 E-value=0.22 Score=47.93 Aligned_cols=80 Identities=10% Similarity=-0.009 Sum_probs=36.8
Q ss_pred cCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCC--HHHHHHHHHHHHHcCCHHHHHHH
Q 007517 341 TGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAMPFEPD--AIIWGSLLGACRTHMKLDLAEVA 418 (600)
Q Consensus 341 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~--~~~~~~ll~~~~~~g~~~~a~~~ 418 (600)
.+..+.+..++...... ..+.....-.+....+.+++..+...++.|+..|. ..-.-=+..+....|+.+.|...
T Consensus 265 ~~~~~~a~~~~~~~~~~---~~~~~~~~w~~~~al~~~~~~~~~~~~~~l~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~ 341 (450)
T d1qsaa1 265 NDVTDEQAKWRDDAIMR---SQSTSLIERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEI 341 (450)
T ss_dssp TTCCHHHHHHHHHHHHT---CCCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCchHHHHHHHHhhccc---ccchHHHHHHHHHHHHcCChHHHHHHHHhcCcccccHHHHHHHHHHHHHHcCChhhHHHH
Confidence 34445555555444332 12333333334444455566666666666532221 11112233445555666666666
Q ss_pred HHHHh
Q 007517 419 AKKLL 423 (600)
Q Consensus 419 ~~~~~ 423 (600)
+..+.
T Consensus 342 ~~~~a 346 (450)
T d1qsaa1 342 LHQLM 346 (450)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 65554
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=94.98 E-value=0.48 Score=35.43 Aligned_cols=140 Identities=11% Similarity=0.045 Sum_probs=93.3
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHH
Q 007517 304 AQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDA 383 (600)
Q Consensus 304 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 383 (600)
.-.|..++..++..+.... .+..-|+.++--....-+-+...+.++.+-+.+.+ ..++++...
T Consensus 13 ildG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDl--------------s~C~Nlk~v 75 (161)
T d1wy6a1 13 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDL--------------DKCQNLKSV 75 (161)
T ss_dssp HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCG--------------GGCSCTHHH
T ss_pred HHhhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhhhcCc--------------hhhhcHHHH
Confidence 3456667777777766542 23444555554444444555555556555443322 345555555
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCCc
Q 007517 384 MKLIEAMPFEPDAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMRKRNVI 462 (600)
Q Consensus 384 ~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 462 (600)
..-+-.++ .+....+.-++...++|.-+.-..++..+++-+..+|.....++++|-+.|...++.+++.+.-++|++
T Consensus 76 v~C~~~~n--~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~K 152 (161)
T d1wy6a1 76 VECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 152 (161)
T ss_dssp HHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhHH
Confidence 55554443 244445666788889999999999999988866667788889999999999999999999999999874
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.69 E-value=0.22 Score=37.61 Aligned_cols=68 Identities=12% Similarity=0.006 Sum_probs=35.0
Q ss_pred CChHHHHHHHHHHhhcCC---HHHHHHHHHhC-CCCC-CH-HHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC
Q 007517 362 PKTEHYACMVDLLGRAGQ---VEDAMKLIEAM-PFEP-DA-IIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKN 429 (600)
Q Consensus 362 p~~~~~~~li~~~~~~g~---~~~A~~~~~~m-~~~p-~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 429 (600)
|++.+--....++.+..+ ++++..++++. ...| +. ..|-.|.-+|.+.|++++|.+.++++++++|++
T Consensus 33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n 106 (124)
T d2pqrb1 33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNN 106 (124)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC
T ss_pred CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCc
Confidence 344444444555554432 34555555554 1122 22 344555555666666666666666666666665
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=93.25 E-value=0.54 Score=36.10 Aligned_cols=46 Identities=11% Similarity=-0.052 Sum_probs=21.4
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cCCHHHHHHHHHHhHh
Q 007517 308 LGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSY----TGKVKEGREIFESMKS 356 (600)
Q Consensus 308 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~~~~ 356 (600)
+.++|+++|++..+.|. |+ ....|-..+.+ ..+.++|.++|+...+
T Consensus 74 d~~~A~~~~~~aa~~g~-~~--a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~ 123 (133)
T d1klxa_ 74 DLRKAAQYYSKACGLND-QD--GCLILGYKQYAGKGVVKNEKQAVKTFEKACR 123 (133)
T ss_dssp CHHHHHHHHHHHHHTTC-HH--HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHhhhhccCc-ch--HHHHHHHHHHcCCccCCCHHHHHHHHHHHHH
Confidence 44566666666655541 22 22222222221 3456666666666554
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=93.09 E-value=0.78 Score=35.13 Aligned_cols=115 Identities=6% Similarity=-0.071 Sum_probs=57.3
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHH
Q 007517 308 LGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLI 387 (600)
Q Consensus 308 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 387 (600)
++++|+++|++..+.|. |.. ...+ +.....+.++|.+++++..+. | ++.....|..+|..-
T Consensus 8 d~~~A~~~~~kaa~~g~-~~a--~~~l--~~~~~~~~~~a~~~~~~aa~~-g---~~~a~~~Lg~~y~~g---------- 68 (133)
T d1klxa_ 8 DLKKAIQYYVKACELNE-MFG--CLSL--VSNSQINKQKLFQYLSKACEL-N---SGNGCRFLGDFYENG---------- 68 (133)
T ss_dssp HHHHHHHHHHHHHHTTC-TTH--HHHH--HTCTTSCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHC----------
T ss_pred CHHHHHHHHHHHHHCCC-hhh--hhhh--ccccccCHHHHHHHHhhhhcc-c---chhhhhhHHHhhhhc----------
Confidence 45677777777776652 221 1112 123334566666666655542 2 233333344433220
Q ss_pred HhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHh----cCCchHHHHHHHHHHhCCC
Q 007517 388 EAMPFEPDAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYAS----QGRFHDVAELRKNMRKRNV 461 (600)
Q Consensus 388 ~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~g~ 461 (600)
.+ ...|.++|.+.++++.+.. ++.....|+.+|.. ..+.++|.+++++..+.|.
T Consensus 69 --~~----------------~~~d~~~A~~~~~~aa~~g--~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~ 126 (133)
T d1klxa_ 69 --KY----------------VKKDLRKAAQYYSKACGLN--DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 126 (133)
T ss_dssp --SS----------------SCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred --cc----------------cchhhHHHHHHHhhhhccC--cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCC
Confidence 00 0234555666666655443 23445556666654 3456666666666666554
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.67 E-value=0.79 Score=34.41 Aligned_cols=46 Identities=13% Similarity=0.177 Sum_probs=22.2
Q ss_pred CHHHHHHHHHHhHhcCCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHHhC
Q 007517 343 KVKEGREIFESMKSKYLVEPK-TEHYACMVDLLGRAGQVEDAMKLIEAM 390 (600)
Q Consensus 343 ~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m 390 (600)
+.++|..+++.+.+.. +.+ ...+-.|.-+|.+.|++++|.+.++.+
T Consensus 53 d~~~gI~lLe~~~~~~--p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~ 99 (124)
T d2pqrb1 53 DERLGVKILTDIYKEA--ESRRRECLYYLTIGCYKLGEYSMAKRYVDTL 99 (124)
T ss_dssp HHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcC--chhHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3445555555554421 112 233344455555555555555555554
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=92.08 E-value=1.7 Score=32.39 Aligned_cols=64 Identities=14% Similarity=0.089 Sum_probs=47.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCC
Q 007517 295 MWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLV 360 (600)
Q Consensus 295 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~ 360 (600)
..+..++...++|+-++-.++++++.+. -+|++.....+..||.+.|...++.+++.+..++ |+
T Consensus 88 ~vdlALd~lv~~~kkd~Ld~i~~~l~kn-~~i~~~~llkia~A~kkig~~re~nell~~ACe~-G~ 151 (161)
T d1wy6a1 88 HVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKK-GE 151 (161)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TC
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHH-hH
Confidence 4455567777888888888888886664 4777777778888888888888888888888775 44
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=80.73 E-value=3.7 Score=28.87 Aligned_cols=63 Identities=19% Similarity=0.276 Sum_probs=49.9
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHH
Q 007517 308 LGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVD 372 (600)
Q Consensus 308 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 372 (600)
+.-++.+-++.+....+.|+.....+.|.||-+..++..|.++|+.++.+-| ++...|..+++
T Consensus 21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~~--~~k~~y~yilq 83 (105)
T d1v54e_ 21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG--PHKEIYPYVIQ 83 (105)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc--CcHHHHHHHHH
Confidence 3446666777777778899999999999999999999999999999887643 44567766654
|