Citrus Sinensis ID: 007519
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 600 | 2.2.26 [Sep-21-2011] | |||||||
| P0C7R0 | 761 | Pentatricopeptide repeat- | yes | no | 0.981 | 0.773 | 0.496 | 0.0 | |
| Q9SY02 | 781 | Pentatricopeptide repeat- | no | no | 0.958 | 0.736 | 0.395 | 1e-131 | |
| Q56XI1 | 705 | Pentatricopeptide repeat- | no | no | 0.938 | 0.798 | 0.363 | 1e-116 | |
| Q9FXB9 | 704 | Pentatricopeptide repeat- | no | no | 0.961 | 0.819 | 0.369 | 1e-114 | |
| O64766 | 627 | Pentatricopeptide repeat- | no | no | 0.885 | 0.846 | 0.386 | 1e-112 | |
| Q9C8L6 | 717 | Pentatricopeptide repeat- | no | no | 0.991 | 0.829 | 0.346 | 1e-111 | |
| O04590 | 656 | Pentatricopeptide repeat- | no | no | 0.928 | 0.849 | 0.373 | 1e-111 | |
| Q9SIT7 | 697 | Pentatricopeptide repeat- | no | no | 0.92 | 0.791 | 0.316 | 5e-94 | |
| Q9M4P3 | 656 | Pentatricopeptide repeat- | no | no | 0.816 | 0.746 | 0.366 | 9e-93 | |
| Q9SHZ8 | 786 | Pentatricopeptide repeat- | no | no | 0.965 | 0.736 | 0.334 | 7e-92 |
| >sp|P0C7R0|PPR69_ARATH Pentatricopeptide repeat-containing protein At1g32415, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E56 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 640 bits (1651), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 330/664 (49%), Positives = 445/664 (67%), Gaps = 75/664 (11%)
Query: 11 VVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPE 70
VV+ TS ++KY+K G++DEA+ LF++MP+RN+V+ NAML+G+++ R++EA LF EMP
Sbjct: 77 VVYWTSLLSKYAKTGYLDEARVLFEVMPERNIVTCNAMLTGYVKCRRMNEAWTLFREMP- 135
Query: 71 RNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSM 130
+NVVSWT M+ L D GR +A +LF+EMPERNVVSWN++V GLIRNG++ +A++VF++M
Sbjct: 136 KNVVSWTVMLTALCDDGRSEDAVELFDEMPERNVVSWNTLVTGLIRNGDMEKAKQVFDAM 195
Query: 131 PIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTS------------------- 171
P ++V+SWNAMI GY+E M EA +LF +M E+NVVTWTS
Sbjct: 196 PSRDVVSWNAMIKGYIENDGMEEAKLLFGDMSEKNVVTWTSMVYGYCRYGDVREAYRLFC 255
Query: 172 ------------MISGYCRAGEVEEGYCLFRRMPR---------KNVVSWTAMIGGFA-- 208
MISG+ E LF M + + ++S GG
Sbjct: 256 EMPERNIVSWTAMISGFAWNELYREALMLFLEMKKDVDAVSPNGETLISLAYACGGLGVE 315
Query: 209 ----------------W-----NGFHKESLLLFIEMKGICDNGNNC-----NVQSCNSMI 242
W +G +SL+ G+ + + ++QSCN +I
Sbjct: 316 FRRLGEQLHAQVISNGWETVDHDGRLAKSLVHMYASSGLIASAQSLLNESFDLQSCNIII 375
Query: 243 NGYIRFGRLEEAQNLFDTVP-VRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWT 301
N Y++ G LE A+ LF+ V + D++SWTSMIDGYL G VS A+ LF + D+D V WT
Sbjct: 376 NRYLKNGDLERAETLFERVKSLHDKVSWTSMIDGYLEAGDVSRAFGLFQKLHDKDGVTWT 435
Query: 302 AMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKT 361
MISGLVQNELF EA L +M G+ PLN+T+SVL +AGAT+N+D G+ IHCV+ KT
Sbjct: 436 VMISGLVQNELFAEAASLLSDMVRCGLKPLNSTYSVLLSSAGATSNLDQGKHIHCVIAKT 495
Query: 362 ES--ESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLK 419
+ + DLIL+N L+SMYAKCG I++AY IF+ MV +D VSWNSM+MG SHHGLA++ L
Sbjct: 496 TACYDPDLILQNSLVSMYAKCGAIEDAYEIFAKMVQKDTVSWNSMIMGLSHHGLADKALN 555
Query: 420 VFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLL 479
+F+ ML+SG PNSVTFLG+LSACSH+GL++RG ELF AM + Y IQPG +HY+SMI+LL
Sbjct: 556 LFKEMLDSGKKPNSVTFLGVLSACSHSGLITRGLELFKAMKETYSIQPGIDHYISMIDLL 615
Query: 480 GRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFC--EGNAE-IAEHAAKRLLELDPLNA 536
GRAGK+KEAEEF+ LPF PDH ++GALLG CG + +AE IAE AA RLLELDP+NA
Sbjct: 616 GRAGKLKEAEEFISALPFTPDHTVYGALLGLCGLNWRDKDAEGIAERAAMRLLELDPVNA 675
Query: 537 PAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVA 596
P HV LCN+YA GRH E ++R +MG+KGV+K PGCSW++ NG +FLSGDK ++ A
Sbjct: 676 PGHVALCNVYAGLGRHDMEKEMRKEMGIKGVKKTPGCSWVVVNGRANVFLSGDKSASEAA 735
Query: 597 EILL 600
+++L
Sbjct: 736 QMVL 739
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SY02|PP301_ARATH Pentatricopeptide repeat-containing protein At4g02750 OS=Arabidopsis thaliana GN=PCMP-H24 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 469 bits (1208), Expect = e-131, Method: Compositional matrix adjust.
Identities = 243/614 (39%), Positives = 360/614 (58%), Gaps = 39/614 (6%)
Query: 17 SITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSW 76
+I+ Y + G +EA +F+ MP+ + VSYN M+SG+L+NG AR+LF+EMPER++VSW
Sbjct: 70 AISSYMRTGRCNEALRVFKRMPRWSSVSYNGMISGYLRNGEFELARKLFDEMPERDLVSW 129
Query: 77 TAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVI 136
MI G + +AR+LFE MPER+V SWN+M+ G +NG +++AR VF+ MP KN +
Sbjct: 130 NVMIKGYVRNRNLGKARELFEIMPERDVCSWNTMLSGYAQNGCVDDARSVFDRMPEKNDV 189
Query: 137 SWNAMIAGYVECCMMGEAIVLFEEMEE-------------------------------RN 165
SWNA+++ YV+ M EA +LF+ E R+
Sbjct: 190 SWNALLSAYVQNSKMEEACMLFKSRENWALVSWNCLLGGFVKKKKIVEARQFFDSMNVRD 249
Query: 166 VVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKG 225
VV+W ++I+GY ++G+++E LF P ++V +WTAM+ G+ N +E+ LF +M
Sbjct: 250 VVSWNTIITGYAQSGKIDEARQLFDESPVQDVFTWTAMVSGYIQNRMVEEARELFDKMP- 308
Query: 226 ICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNA 285
N S N+M+ GY++ R+E A+ LFD +P R+ +W +MI GY G++S A
Sbjct: 309 ------ERNEVSWNAMLAGYVQGERMEMAKELFDVMPCRNVSTWNTMITGYAQCGKISEA 362
Query: 286 YYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGAT 345
LF MP RD V+W AMI+G Q+ EA LF++M G ++FS
Sbjct: 363 KNLFDKMPKRDPVSWAAMIAGYSQSGHSFEALRLFVQMEREGGRLNRSSFSSALSTCADV 422
Query: 346 ANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMV 405
++LG+Q+H L+K E+ + N L+ MY KCG I+ A ++F M +D+VSWN+M+
Sbjct: 423 VALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDLFKEMAGKDIVSWNTMI 482
Query: 406 MGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKI 465
G+S HG L+ FESM G P+ T + +LSACSH GLV +G + F M Y +
Sbjct: 483 AGYSRHGFGEVALRFFESMKREGLKPDDATMVAVLSACSHTGLVDKGRQYFYTMTQDYGV 542
Query: 466 QPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAA 525
P +HY M++LLGRAG +++A + +PFEPD IWG LLGA GN E+AE AA
Sbjct: 543 MPNSQHYACMVDLLGRAGLLEDAHNLMKNMPFEPDAAIWGTLLGA-SRVHGNTELAETAA 601
Query: 526 KRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMF 585
++ ++P N+ +V+L N+YA+SGR + KLR+ M KGV+KVPG SW+ F
Sbjct: 602 DKIFAMEPENSGMYVLLSNLYASSGRWGDVGKLRVRMRDKGVKKVPGYSWIEIQNKTHTF 661
Query: 586 LSGDKIPAQVAEIL 599
GD+ + EI
Sbjct: 662 SVGDEFHPEKDEIF 675
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q56XI1|PPR25_ARATH Pentatricopeptide repeat-containing protein At1g09410 OS=Arabidopsis thaliana GN=PCMP-H18 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 419 bits (1078), Expect = e-116, Method: Compositional matrix adjust.
Identities = 208/572 (36%), Positives = 344/572 (60%), Gaps = 9/572 (1%)
Query: 18 ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWT 77
IT S+ G I EA+ LF +++ S+N+M++G+ N +AR+LF+EMP+RN++SW
Sbjct: 24 ITHLSRIGKIHEARKLFDSCDSKSISSWNSMVAGYFANLMPRDARKLFDEMPDRNIISWN 83
Query: 78 AMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVIS 137
++ G G + EARK+F+ MPERNVVSW ++V G + NG+++ A +F MP KN +S
Sbjct: 84 GLVSGYMKNGEIDEARKVFDLMPERNVVSWTALVKGYVHNGKVDVAESLFWKMPEKNKVS 143
Query: 138 WNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNV 197
W M+ G+++ + +A L+E + +++ + TSMI G C+ G V+E +F M ++V
Sbjct: 144 WTVMLIGFLQDGRIDDACKLYEMIPDKDNIARTSMIHGLCKEGRVDEAREIFDEMSERSV 203
Query: 198 VSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNL 257
++WT M+ G+ N ++ +F M + S SM+ GY++ GR+E+A+ L
Sbjct: 204 ITWTTMVTGYGQNNRVDDARKIFDVMPEKTE-------VSWTSMLMGYVQNGRIEDAEEL 256
Query: 258 FDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEAT 317
F+ +PV+ I+ +MI G G+++ A +F +M +R+ +W +I +N +EA
Sbjct: 257 FEVMPVKPVIACNAMISGLGQKGEIAKARRVFDSMKERNDASWQTVIKIHERNGFELEAL 316
Query: 318 YLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMY 377
LF+ M+ GV P T + + A++ G+Q+H L++ + + D+ + + L++MY
Sbjct: 317 DLFILMQKQGVRPTFPTLISILSVCASLASLHHGKQVHAQLVRCQFDVDVYVASVLMTMY 376
Query: 378 AKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESG-THPNSVTF 436
KCG + + IF S+D++ WNS++ G++ HGL E LKVF M SG T PN VTF
Sbjct: 377 IKCGELVKSKLIFDRFPSKDIIMWNSIISGYASHGLGEEALKVFCEMPLSGSTKPNEVTF 436
Query: 437 LGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLP 496
+ LSACS+AG+V G +++ +M V+ ++P HY M+++LGRAG+ EA E + +
Sbjct: 437 VATLSACSYAGMVEEGLKIYESMESVFGVKPITAHYACMVDMLGRAGRFNEAMEMIDSMT 496
Query: 497 FEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEH 556
EPD +WG+LLGAC ++AE AK+L+E++P N+ +++L N+YA+ GR +
Sbjct: 497 VEPDAAVWGSLLGACR-THSQLDVAEFCAKKLIEIEPENSGTYILLSNMYASQGRWADVA 555
Query: 557 KLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSG 588
+LR M + VRK PGCSW + F G
Sbjct: 556 ELRKLMKTRLVRKSPGCSWTEVENKVHAFTRG 587
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FXB9|PPR84_ARATH Pentatricopeptide repeat-containing protein At1g56690, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H69 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 414 bits (1063), Expect = e-114, Method: Compositional matrix adjust.
Identities = 216/585 (36%), Positives = 335/585 (57%), Gaps = 8/585 (1%)
Query: 4 RNHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARR 63
R + S V+ + I++ S+ G I+EA+ F + + + S+N+++SG+ NG EAR+
Sbjct: 10 RTYLTSTGVNCSFEISRLSRIGKINEARKFFDSLQFKAIGSWNSIVSGYFSNGLPKEARQ 69
Query: 64 LFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEA 123
LF+EM ERNVVSW ++ G + EAR +FE MPERNVVSW +MV G ++ G + EA
Sbjct: 70 LFDEMSERNVVSWNGLVSGYIKNRMIVEARNVFELMPERNVVSWTAMVKGYMQEGMVGEA 129
Query: 124 RKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVE 183
+F MP +N +SW M G ++ + +A L++ M ++VV T+MI G CR G V+
Sbjct: 130 ESLFWRMPERNEVSWTVMFGGLIDDGRIDKARKLYDMMPVKDVVASTNMIGGLCREGRVD 189
Query: 184 EGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMIN 243
E +F M +NVV+WT MI G+ N + LF M + S SM+
Sbjct: 190 EARLIFDEMRERNVVTWTTMITGYRQNNRVDVARKLFEVMPEKTE-------VSWTSMLL 242
Query: 244 GYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAM 303
GY GR+E+A+ F+ +P++ I+ +MI G+ VG++S A +F M DRD W M
Sbjct: 243 GYTLSGRIEDAEEFFEVMPMKPVIACNAMIVGFGEVGEISKARRVFDLMEDRDNATWRGM 302
Query: 304 ISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTES 363
I + +EA LF +M+ GV P + + A++ GRQ+H L++ +
Sbjct: 303 IKAYERKGFELEALDLFAQMQKQGVRPSFPSLISILSVCATLASLQYGRQVHAHLVRCQF 362
Query: 364 ESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFES 423
+ D+ + + L++MY KCG + A +F S+D++ WNS++ G++ HGL E LK+F
Sbjct: 363 DDDVYVASVLMTMYVKCGELVKAKLVFDRFSSKDIIMWNSIISGYASHGLGEEALKIFHE 422
Query: 424 MLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAG 483
M SGT PN VT + IL+ACS+AG + G E+F +M + + P EHY +++LGRAG
Sbjct: 423 MPSSGTMPNKVTLIAILTACSYAGKLEEGLEIFESMESKFCVTPTVEHYSCTVDMLGRAG 482
Query: 484 KIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLC 543
++ +A E + + +PD +WGALLGAC ++AE AAK+L E +P NA +V+L
Sbjct: 483 QVDKAMELIESMTIKPDATVWGALLGACK-THSRLDLAEVAAKKLFENEPDNAGTYVLLS 541
Query: 544 NIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSG 588
+I A+ + + +R +M V K PGCSW+ + MF G
Sbjct: 542 SINASRSKWGDVAVVRKNMRTNNVSKFPGCSWIEVGKKVHMFTRG 586
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|O64766|PP185_ARATH Pentatricopeptide repeat-containing protein At2g35030, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E15 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 405 bits (1040), Expect = e-112, Method: Compositional matrix adjust.
Identities = 210/543 (38%), Positives = 327/543 (60%), Gaps = 12/543 (2%)
Query: 56 GRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPER-NVVSWNSMVVGL 114
G+++EAR+LF+ +PER+VV+WT +I G G + EAR+LF+ + R NVV+W +MV G
Sbjct: 60 GKIAEARKLFDGLPERDVVTWTHVITGYIKLGDMREARELFDRVDSRKNVVTWTAMVSGY 119
Query: 115 IRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMIS 174
+R+ +L+ A +F MP +NV+SWN MI GY + + +A+ LF+EM ERN+V+W SM+
Sbjct: 120 LRSKQLSIAEMLFQEMPERNVVSWNTMIDGYAQSGRIDKALELFDEMPERNIVSWNSMVK 179
Query: 175 GYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCN 234
+ G ++E LF RMPR++VVSWTAM+ G A NG E+ LF D N
Sbjct: 180 ALVQRGRIDEAMNLFERMPRRDVVSWTAMVDGLAKNGKVDEARRLF-------DCMPERN 232
Query: 235 VQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPD 294
+ S N+MI GY + R++EA LF +P RD SW +MI G++ +++ A LF MP+
Sbjct: 233 IISWNAMITGYAQNNRIDEADQLFQVMPERDFASWNTMITGFIRNREMNKACGLFDRMPE 292
Query: 295 RDAVAWTAMISGLVQNELFVEATYLFMEM-RAHGVPPLNATFSVLFGAAGATANIDLGRQ 353
++ ++WT MI+G V+N+ EA +F +M R V P T+ + A A + G+Q
Sbjct: 293 KNVISWTTMITGYVENKENEEALNVFSKMLRDGSVKPNVGTYVSILSACSDLAGLVEGQQ 352
Query: 354 IHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSN--MVSRDLVSWNSMVMGFSHH 411
IH ++ K+ + + I+ + L++MY+K G + A +F N + RDL+SWNSM+ ++HH
Sbjct: 353 IHQLISKSVHQKNEIVTSALLNMYSKSGELIAARKMFDNGLVCQRDLISWNSMIAVYAHH 412
Query: 412 GLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEH 471
G E ++++ M + G P++VT+L +L ACSHAGLV +G E F + + EH
Sbjct: 413 GHGKEAIEMYNQMRKHGFKPSAVTYLNLLFACSHAGLVEKGMEFFKDLVRDESLPLREEH 472
Query: 472 YVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLEL 531
Y +++L GRAG++K+ F+ +GA+L AC IA+ K++LE
Sbjct: 473 YTCLVDLCGRAGRLKDVTNFINCDDARLSRSFYGAILSACN-VHNEVSIAKEVVKKVLET 531
Query: 532 DPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKI 591
+A +V++ NIYAA+G+ E ++RM M KG++K PGCSW+ +F+ GDK
Sbjct: 532 GSDDAGTYVLMSNIYAANGKREEAAEMRMKMKEKGLKKQPGCSWVKVGKQNHLFVVGDKS 591
Query: 592 PAQ 594
Q
Sbjct: 592 HPQ 594
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9C8L6|PPR80_ARATH Pentatricopeptide repeat-containing protein At1g53600, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E63 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 404 bits (1037), Expect = e-111, Method: Compositional matrix adjust.
Identities = 230/663 (34%), Positives = 363/663 (54%), Gaps = 68/663 (10%)
Query: 3 ERNHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEAR 62
E + + S I+K+++ G + EA+A+F+ M R++VS+ AM+S + +NG++S+A
Sbjct: 42 ETTTTSTAIFQCNSQISKHARNGNLQEAEAIFRQMSNRSIVSWIAMISAYAENGKMSKAW 101
Query: 63 RLFEEMP--------------------------------ERNVVSWTAMICGLADAGRVC 90
++F+EMP E+N VS+ MI G AGR
Sbjct: 102 QVFDEMPVRVTTSYNAMITAMIKNKCDLGKAYELFCDIPEKNAVSYATMITGFVRAGRFD 161
Query: 91 EARKLFEEMPE--RNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVEC 148
EA L+ E P R+ V+ N ++ G +R G+ NEA +VF M +K V+S ++M+ GY +
Sbjct: 162 EAEFLYAETPVKFRDSVASNVLLSGYLRAGKWNEAVRVFQGMAVKEVVSCSSMVHGYCKM 221
Query: 149 CMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTA------ 202
+ +A LF+ M ERNV+TWT+MI GY +AG E+G+ LF RM ++ V +
Sbjct: 222 GRIVDARSLFDRMTERNVITWTAMIDGYFKAGFFEDGFGLFLRMRQEGDVKVNSNTLAVM 281
Query: 203 --------------MIGGFA------WNGFHKESLLLFI-------EMKGICDNGNNCNV 235
I G ++ F SL+ E K + N +
Sbjct: 282 FKACRDFVRYREGSQIHGLVSRMPLEFDLFLGNSLMSMYSKLGYMGEAKAVFGVMKNKDS 341
Query: 236 QSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDR 295
S NS+I G ++ ++ EA LF+ +P +D +SWT MI G+ G++S LF MP++
Sbjct: 342 VSWNSLITGLVQRKQISEAYELFEKMPGKDMVSWTDMIKGFSGKGEISKCVELFGMMPEK 401
Query: 296 DAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIH 355
D + WTAMIS V N + EA F +M V P + TFS + A + A++ G QIH
Sbjct: 402 DNITWTAMISAFVSNGYYEEALCWFHKMLQKEVCPNSYTFSSVLSATASLADLIEGLQIH 461
Query: 356 CVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLAN 415
++K +DL ++N L+SMY KCG ++AY IFS + ++VS+N+M+ G+S++G
Sbjct: 462 GRVVKMNIVNDLSVQNSLVSMYCKCGNTNDAYKIFSCISEPNIVSYNTMISGYSYNGFGK 521
Query: 416 ETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSM 475
+ LK+F + SG PN VTFL +LSAC H G V GW+ F +M Y I+PGP+HY M
Sbjct: 522 KALKLFSMLESSGKEPNGVTFLALLSACVHVGYVDLGWKYFKSMKSSYNIEPGPDHYACM 581
Query: 476 INLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLN 535
++LLGR+G + +A + +P +P +WG+LL A ++AE AAK+L+EL+P +
Sbjct: 582 VDLLGRSGLLDDASNLISTMPCKPHSGVWGSLLSASK-THLRVDLAELAAKKLIELEPDS 640
Query: 536 APAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQV 595
A +VVL +Y+ G++ + ++ K ++K PG SW++ G + FL+GD+ +
Sbjct: 641 ATPYVVLSQLYSIIGKNRDCDRIMNIKKSKRIKKDPGSSWIILKGEVHNFLAGDESQLNL 700
Query: 596 AEI 598
EI
Sbjct: 701 EEI 703
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|O04590|PPR88_ARATH Pentatricopeptide repeat-containing protein At1g62260, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E10 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 403 bits (1036), Expect = e-111, Method: Compositional matrix adjust.
Identities = 221/591 (37%), Positives = 344/591 (58%), Gaps = 34/591 (5%)
Query: 11 VVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGR---LSEARRLFEE 67
V + I+ Y KR +++A+ LF +MP+R+VV++N M+SG++ G L EAR+LF+E
Sbjct: 71 TVTWNTMISGYVKRREMNQARKLFDVMPKRDVVTWNTMISGYVSCGGIRFLEEARKLFDE 130
Query: 68 MPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVF 127
MP R+ SW MI G A R+ EA LFE+MPERN VSW++M+ G +NGE++ A +F
Sbjct: 131 MPSRDSFSWNTMISGYAKNRRIGEALLLFEKMPERNAVSWSAMITGFCQNGEVDSAVVLF 190
Query: 128 NSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEM------EERNVVTWTSMISGYCRAGE 181
MP+K+ A++AG ++ + EA + + E V + ++I GY + G+
Sbjct: 191 RKMPVKDSSPLCALVAGLIKNERLSEAAWVLGQYGSLVSGREDLVYAYNTLIVGYGQRGQ 250
Query: 182 VEEGYCLFRRMPR---------------KNVVSWTAMIGGFAWNGFHKESLLLFIEMKGI 226
VE CLF ++P KNVVSW +MI + G + LLF +MK
Sbjct: 251 VEAARCLFDQIPDLCGDDHGGEFRERFCKNVVSWNSMIKAYLKVGDVVSARLLFDQMK-- 308
Query: 227 CDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAY 286
+ + S N+MI+GY+ R+E+A LF +P RD SW M+ GY SVG V A
Sbjct: 309 -----DRDTISWNTMIDGYVHVSRMEDAFALFSEMPNRDAHSWNMMVSGYASVGNVELAR 363
Query: 287 YLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATA 346
+ F P++ V+W ++I+ +N+ + EA LF+ M G P T + L A+
Sbjct: 364 HYFEKTPEKHTVSWNSIIAAYEKNKDYKEAVDLFIRMNIEGEKPDPHTLTSLLSASTGLV 423
Query: 347 NIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNM-VSRDLVSWNSMV 405
N+ LG Q+H +++KT D+ + N LI+MY++CG I + IF M + R++++WN+M+
Sbjct: 424 NLRLGMQMHQIVVKTVI-PDVPVHNALITMYSRCGEIMESRRIFDEMKLKREVITWNAMI 482
Query: 406 MGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKI 465
G++ HG A+E L +F SM +G +P+ +TF+ +L+AC+HAGLV F +M VYKI
Sbjct: 483 GGYAFHGNASEALNLFGSMKSNGIYPSHITFVSVLNACAHAGLVDEAKAQFVSMMSVYKI 542
Query: 466 QPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAA 525
+P EHY S++N+ G+ +EA + +PFEPD +WGALL AC N +A AA
Sbjct: 543 EPQMEHYSSLVNVTSGQGQFEEAMYIITSMPFEPDKTVWGALLDACRIY-NNVGLAHVAA 601
Query: 526 KRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWL 576
+ + L+P ++ +V+L N+YA G E ++RM+M K ++K G SW+
Sbjct: 602 EAMSRLEPESSTPYVLLYNMYADMGLWDEASQVRMNMESKRIKKERGSSWV 652
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SIT7|PP151_ARATH Pentatricopeptide repeat-containing protein At2g13600 OS=Arabidopsis thaliana GN=PCMP-E76 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 345 bits (885), Expect = 5e-94, Method: Compositional matrix adjust.
Identities = 190/600 (31%), Positives = 318/600 (53%), Gaps = 48/600 (8%)
Query: 46 NAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVV 105
N ++ + + G L + R++F++MP+RN+ +W +++ GL G + EA LF MPER+
Sbjct: 59 NRLIDAYSKCGSLEDGRQVFDKMPQRNIYTWNSVVTGLTKLGFLDEADSLFRSMPERDQC 118
Query: 106 SWNSMVVGLIRNGELNEARKVFNSMP---------------------------------- 131
+WNSMV G ++ EA F M
Sbjct: 119 TWNSMVSGFAQHDRCEEALCYFAMMHKEGFVLNEYSFASVLSACSGLNDMNKGVQVHSLI 178
Query: 132 -----IKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGY 186
+ +V +A++ Y +C + +A +F+EM +RNVV+W S+I+ + + G E
Sbjct: 179 AKSPFLSDVYIGSALVDMYSKCGNVNDAQRVFDEMGDRNVVSWNSLITCFEQNGPAVEAL 238
Query: 187 CLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKG--ICDNGNNCNVQSCNSMING 244
+F+ M V + ++ + E+ G + ++ ++ N+ ++
Sbjct: 239 DVFQMMLESRVEPDEVTLASVISACASLSAIKVGQEVHGRVVKNDKLRNDIILSNAFVDM 298
Query: 245 YIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMI 304
Y + R++EA+ +FD++P+R+ I+ TSMI GY A +F M +R+ V+W A+I
Sbjct: 299 YAKCSRIKEARFIFDSMPIRNVIAETSMISGYAMAASTKAARLMFTKMAERNVVSWNALI 358
Query: 305 SGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMK---- 360
+G QN EA LF ++ V P + +F+ + A A + LG Q H ++K
Sbjct: 359 AGYTQNGENEEALSLFCLLKRESVCPTHYSFANILKACADLAELHLGMQAHVHVLKHGFK 418
Query: 361 --TESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETL 418
+ E D+ + N LI MY KCG ++ Y +F M+ RD VSWN+M++GF+ +G NE L
Sbjct: 419 FQSGEEDDIFVGNSLIDMYVKCGCVEEGYLVFRKMMERDCVSWNAMIIGFAQNGYGNEAL 478
Query: 419 KVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINL 478
++F MLESG P+ +T +G+LSAC HAG V G F++M + + P +HY M++L
Sbjct: 479 ELFREMLESGEKPDHITMIGVLSACGHAGFVEEGRHYFSSMTRDFGVAPLRDHYTCMVDL 538
Query: 479 LGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPA 538
LGRAG ++EA+ + +P +PD IWG+LL AC N + ++ A++LLE++P N+
Sbjct: 539 LGRAGFLEEAKSMIEEMPMQPDSVIWGSLLAACKV-HRNITLGKYVAEKLLEVEPSNSGP 597
Query: 539 HVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
+V+L N+YA G+ + +R M +GV K PGCSW+ G +F+ DK + +I
Sbjct: 598 YVLLSNMYAELGKWEDVMNVRKSMRKEGVTKQPGCSWIKIQGHDHVFMVKDKSHPRKKQI 657
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9M4P3|PP316_ARATH Pentatricopeptide repeat-containing protein At4g16835, mitochondrial OS=Arabidopsis thaliana GN=DYW10 PE=2 SV=3 | Back alignment and function description |
|---|
Score = 341 bits (875), Expect = 9e-93, Method: Compositional matrix adjust.
Identities = 183/500 (36%), Positives = 288/500 (57%), Gaps = 10/500 (2%)
Query: 101 ERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYV-ECCMMGEAIVLFE 159
+ + N ++ +R+G+++ A +VF+ M KN I+WN+++ G + M EA LF+
Sbjct: 58 QDQIFPLNKIIARCVRSGDIDGALRVFHGMRAKNTITWNSLLIGISKDPSRMMEAHQLFD 117
Query: 160 EMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLL 219
E+ E + ++ M+S Y R E+ F RMP K+ SW MI G+A G +++ L
Sbjct: 118 EIPEPDTFSYNIMLSCYVRNVNFEKAQSFFDRMPFKDAASWNTMITGYARRGEMEKAREL 177
Query: 220 FIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSV 279
F M N S N+MI+GYI G LE+A + F PVR ++WT+MI GY+
Sbjct: 178 FYSMM-------EKNEVSWNAMISGYIECGDLEKASHFFKVAPVRGVVAWTAMITGYMKA 230
Query: 280 GQVSNAYYLFHNMP-DRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVL 338
+V A +F +M +++ V W AMISG V+N + LF M G+ P ++ S
Sbjct: 231 KKVELAEAMFKDMTVNKNLVTWNAMISGYVENSRPEDGLKLFRAMLEEGIRPNSSGLSSA 290
Query: 339 FGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDL 398
+ + LGRQIH ++ K+ +D+ LISMY KCG + +A+ +F M +D+
Sbjct: 291 LLGCSELSALQLGRQIHQIVSKSTLCNDVTALTSLISMYCKCGELGDAWKLFEVMKKKDV 350
Query: 399 VSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNA 458
V+WN+M+ G++ HG A++ L +F M+++ P+ +TF+ +L AC+HAGLV+ G F +
Sbjct: 351 VAWNAMISGYAQHGNADKALCLFREMIDNKIRPDWITFVAVLLACNHAGLVNIGMAYFES 410
Query: 459 MFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNA 518
M YK++P P+HY M++LLGRAGK++EA + + +PF P ++G LLGAC N
Sbjct: 411 MVRDYKVEPQPDHYTCMVDLLGRAGKLEEALKLIRSMPFRPHAAVFGTLLGACR-VHKNV 469
Query: 519 EIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMR 578
E+AE AA++LL+L+ NA +V L NIYA+ R + ++R M V KVPG SW+
Sbjct: 470 ELAEFAAEKLLQLNSQNAAGYVQLANIYASKNRWEDVARVRKRMKESNVVKVPGYSWIEI 529
Query: 579 NGGIQMFLSGDKIPAQVAEI 598
+ F S D+I ++ I
Sbjct: 530 RNKVHHFRSSDRIHPELDSI 549
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SHZ8|PP168_ARATH Pentatricopeptide repeat-containing protein At2g22070 OS=Arabidopsis thaliana GN=PCMP-H41 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 338 bits (867), Expect = 7e-92, Method: Compositional matrix adjust.
Identities = 209/624 (33%), Positives = 336/624 (53%), Gaps = 45/624 (7%)
Query: 21 YSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMI 80
YSK G+ A+ LF MP R S+N +LS + + G + F+++P+R+ VSWT MI
Sbjct: 59 YSKTGYALHARKLFDEMPLRTAFSWNTVLSAYSKRGDMDSTCEFFDQLPQRDSVSWTTMI 118
Query: 81 CGLADAGRVCEARKLFEEMPER-------------------------------------- 102
G + G+ +A ++ +M +
Sbjct: 119 VGYKNIGQYHKAIRVMGDMVKEGIEPTQFTLTNVLASVAATRCMETGKKVHSFIVKLGLR 178
Query: 103 -NVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEM 161
NV NS++ + G+ A+ VF+ M ++++ SWNAMIA +++ M A+ FE+M
Sbjct: 179 GNVSVSNSLLNMYAKCGDPMMAKFVFDRMVVRDISSWNAMIALHMQVGQMDLAMAQFEQM 238
Query: 162 EERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNG-FHKESLLLF 220
ER++VTW SMISG+ + G +F +M R +++S + + E L +
Sbjct: 239 AERDIVTWNSMISGFNQRGYDLRALDIFSKMLRDSLLSPDRFTLASVLSACANLEKLCIG 298
Query: 221 IEMKG-ICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRD-EIS-WTSMIDGYL 277
++ I G + + N++I+ Y R G +E A+ L + +D +I +T+++DGY+
Sbjct: 299 KQIHSHIVTTGFDISGIVLNALISMYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYI 358
Query: 278 SVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSV 337
+G ++ A +F ++ DRD VAWTAMI G Q+ + EA LF M G P + T +
Sbjct: 359 KLGDMNQAKNIFVSLKDRDVVAWTAMIVGYEQHGSYGEAINLFRSMVGGGQRPNSYTLAA 418
Query: 338 LFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNM-VSR 396
+ A + A++ G+QIH +K+ + + N LI+MYAK G I +A F + R
Sbjct: 419 MLSVASSLASLSHGKQIHGSAVKSGEIYSVSVSNALITMYAKAGNITSASRAFDLIRCER 478
Query: 397 DLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELF 456
D VSW SM++ + HG A E L++FE+ML G P+ +T++G+ SAC+HAGLV++G + F
Sbjct: 479 DTVSWTSMIIALAQHGHAEEALELFETMLMEGLRPDHITYVGVFSACTHAGLVNQGRQYF 538
Query: 457 NAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEG 516
+ M DV KI P HY M++L GRAG ++EA+EF+ ++P EPD WG+LL AC
Sbjct: 539 DMMKDVDKIIPTLSHYACMVDLFGRAGLLQEAQEFIEKMPIEPDVVTWGSLLSACR-VHK 597
Query: 517 NAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWL 576
N ++ + AA+RLL L+P N+ A+ L N+Y+A G+ E K+R M V+K G SW+
Sbjct: 598 NIDLGKVAAERLLLLEPENSGAYSALANLYSACGKWEEAAKIRKSMKDGRVKKEQGFSWI 657
Query: 577 MRNGGIQMFLSGDKIPAQVAEILL 600
+ +F D + EI +
Sbjct: 658 EVKHKVHVFGVEDGTHPEKNEIYM 681
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 600 | ||||||
| 297744236 | 664 | unnamed protein product [Vitis vinifera] | 0.963 | 0.870 | 0.707 | 0.0 | |
| 255575746 | 676 | pentatricopeptide repeat-containing prot | 0.993 | 0.881 | 0.602 | 0.0 | |
| 224126355 | 693 | predicted protein [Populus trichocarpa] | 0.986 | 0.854 | 0.598 | 0.0 | |
| 225437951 | 743 | PREDICTED: pentatricopeptide repeat-cont | 0.981 | 0.792 | 0.601 | 0.0 | |
| 357482291 | 735 | Pentatricopeptide repeat-containing prot | 0.986 | 0.805 | 0.525 | 0.0 | |
| 18398422 | 761 | pentatricopeptide repeat-containing prot | 0.981 | 0.773 | 0.496 | 0.0 | |
| 8920616 | 864 | Contains similarity to a hypothetical pr | 0.981 | 0.681 | 0.496 | 1e-180 | |
| 297846216 | 792 | predicted protein [Arabidopsis lyrata su | 0.985 | 0.746 | 0.493 | 1e-180 | |
| 356511265 | 750 | PREDICTED: pentatricopeptide repeat-cont | 0.961 | 0.769 | 0.396 | 1e-133 | |
| 359491499 | 766 | PREDICTED: pentatricopeptide repeat-cont | 0.981 | 0.768 | 0.396 | 1e-133 |
| >gi|297744236|emb|CBI37206.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 875 bits (2262), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 417/589 (70%), Positives = 495/589 (84%), Gaps = 11/589 (1%)
Query: 11 VVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPE 70
VV TS ++K+SK GFIDEA+ALF++MP+RNVV+YNAMLSG++Q GRLS+A R FEEMPE
Sbjct: 76 VVCWTSLLSKFSKNGFIDEARALFEIMPERNVVTYNAMLSGYVQCGRLSDACRFFEEMPE 135
Query: 71 RNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSM 130
RNVVSWT+++CGLA+AGR+ EAR+LF MPERNVVSWNSM+VGLIR+G+L EAR+VFN M
Sbjct: 136 RNVVSWTSLLCGLANAGRIGEARELFNVMPERNVVSWNSMLVGLIRSGQLEEARRVFNEM 195
Query: 131 PIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFR 190
P+K+ +SWN MIAGY E M EA VLF+ M +RNVVTWTSMISGYCRAG V+EGYCLF+
Sbjct: 196 PVKSQVSWNVMIAGYAEHSRMEEARVLFDGMGDRNVVTWTSMISGYCRAGNVQEGYCLFQ 255
Query: 191 RMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGR 250
+MP +NVVSWTAMIGGFAWNGF+KE+L N + N QSCNSMINGYIR G+
Sbjct: 256 KMPERNVVSWTAMIGGFAWNGFYKEAL-----------NSMSYNTQSCNSMINGYIRIGQ 304
Query: 251 LEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQN 310
LE+AQ+LFDT+PVRD+ISWTSMI+GY +VGQ++ A YLF+NMPDRDAVAWT M+SG VQN
Sbjct: 305 LEKAQSLFDTIPVRDKISWTSMINGYFNVGQIAKACYLFNNMPDRDAVAWTVMVSGHVQN 364
Query: 311 ELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILE 370
ELF EATYLF EMR GV PLN+TFS+L GAAGA A +D GRQ HC+LMKT+ E DLIL+
Sbjct: 365 ELFAEATYLFSEMRVKGVSPLNSTFSILLGAAGAMAYLDQGRQFHCLLMKTQFEFDLILQ 424
Query: 371 NCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTH 430
N LISMYAKCG I +AY+IFS M+SRDL+SWNSM+MGFSHHGL +E LKVFE+ML SGTH
Sbjct: 425 NSLISMYAKCGEIGDAYSIFSKMISRDLISWNSMIMGFSHHGLTSEALKVFEAMLTSGTH 484
Query: 431 PNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEE 490
PNSVTFLGILSACSHAGL+++GWELF+AM DV+ IQP EHYV M+NLLGRAGK++EAEE
Sbjct: 485 PNSVTFLGILSACSHAGLLNQGWELFDAMSDVFAIQPQLEHYVCMVNLLGRAGKVEEAEE 544
Query: 491 FVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASG 550
F+ +LPFEPD IWGALLG CGF N +A AAKRLLELDPLNAPAHVVLCNI+A+ G
Sbjct: 545 FISKLPFEPDLTIWGALLGVCGFGMINTGVARRAAKRLLELDPLNAPAHVVLCNIHASIG 604
Query: 551 RHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEIL 599
+ EE +LR +MGLKGVRKVPGCSW++ G +FLSGD+I Q E+L
Sbjct: 605 QRAEEGQLRKEMGLKGVRKVPGCSWILLKGEPYVFLSGDRIHPQADEML 653
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255575746|ref|XP_002528772.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223531775|gb|EEF33594.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 810 bits (2093), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 400/664 (60%), Positives = 488/664 (73%), Gaps = 68/664 (10%)
Query: 4 RNHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARR 63
+ P S +V+ TS ++KYS+ GF+DEA+ALF +MP+RN VSYNA+LSG LQ GRLSEA +
Sbjct: 3 KRSPLSRIVYWTSLLSKYSRSGFVDEARALFDIMPERNAVSYNALLSGLLQCGRLSEAMK 62
Query: 64 LFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEA 123
LFEEMPERNVVSWT+M+CGLADAG++CEA+ LFEEMP+RNVVSWN+M+VGLIRNG+L A
Sbjct: 63 LFEEMPERNVVSWTSMLCGLADAGKICEAKSLFEEMPDRNVVSWNAMIVGLIRNGDLEAA 122
Query: 124 RKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVE 183
R VF+ P+KN SWN MIAGY E M EA LF+EME+RNV+TWTSM+SGYCRAGEVE
Sbjct: 123 RMVFDESPVKNAASWNGMIAGYAENGRMEEARALFDEMEDRNVITWTSMVSGYCRAGEVE 182
Query: 184 EGY-------------------------------CLFRRMPR-----KNVVSWTAMIGGF 207
EGY LF M R N+ ++ ++
Sbjct: 183 EGYHLFRTMPKRNIVSWTAMIGGFTWNGFYEDALLLFLEMKRGADITPNIETFISLAYAC 242
Query: 208 AWNGFHK------------------------ESLLLFIEMKGICD--------NGNNCNV 235
A GFH+ + L+ G D N N V
Sbjct: 243 AGLGFHRLGKQLHARLITEGLDNDDYDGRLSKGLICMYSSIGFMDYAHYIFNKNSNYYVV 302
Query: 236 QSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDR 295
QSCN MINGYIR G L++AQNLFDT+PVRD+I+WTSMIDGYL +G VS A LF MP++
Sbjct: 303 QSCNYMINGYIRIGLLDKAQNLFDTMPVRDKITWTSMIDGYLVIGNVSEACSLFLYMPEK 362
Query: 296 DAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIH 355
DAVAWT MISG V+NELF EATYLF EM GV PL++T+++LFGAAGA A++D GRQ+H
Sbjct: 363 DAVAWTTMISGHVRNELFAEATYLFSEMLTQGVRPLSSTYAILFGAAGAVASLDQGRQLH 422
Query: 356 CVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLAN 415
+L KT S++DLILEN LISMYAKCG I NAY IFS M+S DL+SWNSM+MGFSHHGLAN
Sbjct: 423 AMLTKTLSDNDLILENSLISMYAKCGEIRNAYRIFSQMISHDLISWNSMIMGFSHHGLAN 482
Query: 416 ETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSM 475
E L+VFE+M++SGTHPNSVTFLG+LSACSHAGL+++GWE+FNAM DV+ +QPG EHY+ M
Sbjct: 483 EALEVFEAMVDSGTHPNSVTFLGVLSACSHAGLINQGWEIFNAMSDVFAVQPGLEHYICM 542
Query: 476 INLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLN 535
+NLLGRAGK+KEAEE +L LP E +H IWGALLG C F E NA+IA+ AA R+LELDPLN
Sbjct: 543 VNLLGRAGKLKEAEELILGLPLERNHAIWGALLGVCSFSEKNADIAKRAATRILELDPLN 602
Query: 536 APAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQV 595
APAHV+LCNIYAASG+H+EEHKLR +MGLKGV+KVPGCSW++ NG + +FLSGDK Q
Sbjct: 603 APAHVLLCNIYAASGQHIEEHKLRKEMGLKGVKKVPGCSWIVLNGRVHVFLSGDKPRLQA 662
Query: 596 AEIL 599
++L
Sbjct: 663 KDML 666
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224126355|ref|XP_002329533.1| predicted protein [Populus trichocarpa] gi|222870242|gb|EEF07373.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 799 bits (2063), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 395/660 (59%), Positives = 486/660 (73%), Gaps = 68/660 (10%)
Query: 9 SLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM 68
S + H TS +TKYS+ GFIDE++ LF +MP+RN+VSYN MLSG+LQ GRLSEAR LFEEM
Sbjct: 31 SRIAHWTSLLTKYSRIGFIDESRVLFDIMPERNIVSYNVMLSGYLQCGRLSEARGLFEEM 90
Query: 69 PERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFN 128
PERNVVSWT+M+CGLADAGR+CEAR+LF+EMPERNVVSWN+MV GLI+N +L EAR+VF+
Sbjct: 91 PERNVVSWTSMLCGLADAGRICEARELFKEMPERNVVSWNAMVAGLIKNEDLEEARRVFD 150
Query: 129 SMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVE----- 183
+P KNV+SWNAMI G+ E M EA VLFEEME+RNV+TWT+MI+GYCR G+V
Sbjct: 151 EIPEKNVVSWNAMIKGFAENGKMEEARVLFEEMEDRNVITWTTMIAGYCRIGDVREAYCF 210
Query: 184 --------------------------EGYCLFRRMPRKNVVSWTA--------------- 202
E LF M R++ ++
Sbjct: 211 FCRIPERNVVSWTAMISGFTWNGYYGEALLLFLEMKRRSNIAPNGETFISLAYACAGMRF 270
Query: 203 -----------MIGGFAW---NGFHKESLLLFIEMKGICD--------NGNNCNVQSCNS 240
+I G + +G +SL+ + G D N N+ VQSCN
Sbjct: 271 HHLGKQLHAQLIINGLEYEDYDGRIAKSLIHMYSLFGAMDYAHYVFNKNLNSHAVQSCNH 330
Query: 241 MINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAW 300
MINGY R G++E+A+ LFDT+P RD I+WTSMI GY +G VS A YLF NMPD+D+VAW
Sbjct: 331 MINGYTRIGQVEKARELFDTIPARDNITWTSMIVGYFDIGNVSEACYLFENMPDKDSVAW 390
Query: 301 TAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMK 360
T+MISGLVQNELF++AT + M AHG PPL++T+++LFGAAGA A++D GRQ+H +LMK
Sbjct: 391 TSMISGLVQNELFLKATSFLLRMLAHGAPPLSSTYAILFGAAGAIAHLDFGRQLHNMLMK 450
Query: 361 TESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKV 420
T S+ DLIL N LISMYAKCG I +AY+IF+NM+ RDL+SWN+M+MG +HH LANETLKV
Sbjct: 451 TLSDCDLILSNSLISMYAKCGEIHDAYSIFTNMIYRDLISWNTMIMGLAHHALANETLKV 510
Query: 421 FESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLG 480
FE+ML+SGT PNSVTFLGILSACSHAGLVS+G +LF AM DVY IQPG EHY+SMINLLG
Sbjct: 511 FETMLQSGTRPNSVTFLGILSACSHAGLVSQGCKLFKAMRDVYAIQPGLEHYISMINLLG 570
Query: 481 RAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHV 540
RAGK++EAEE +L LPFE +H IWGALLG CG E NA+IA+HAA+RLLELDPLNAPAHV
Sbjct: 571 RAGKVREAEELILGLPFETNHAIWGALLGVCGVAEKNADIAQHAARRLLELDPLNAPAHV 630
Query: 541 VLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEILL 600
LCNIYAA G+H+EE KLR +MGLKGVRKVPGCSW++ NG + +FLSGDK+ + E+LL
Sbjct: 631 ALCNIYAACGKHIEEQKLRKEMGLKGVRKVPGCSWIVLNGNVCVFLSGDKLDPEADEMLL 690
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225437951|ref|XP_002269187.1| PREDICTED: pentatricopeptide repeat-containing protein At1g32415, mitochondrial-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 776 bits (2003), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 395/657 (60%), Positives = 478/657 (72%), Gaps = 68/657 (10%)
Query: 11 VVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPE 70
VV TS ++K+SK GFIDEA+ALF++MP+RNVV+YNAMLSG++Q GRLS+A R FEEMPE
Sbjct: 76 VVCWTSLLSKFSKNGFIDEARALFEIMPERNVVTYNAMLSGYVQCGRLSDACRFFEEMPE 135
Query: 71 RNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSM 130
RNVVSWT+++CGLA+AGR+ EAR+LF MPERNVVSWNSM+VGLIR+G+L EAR+VFN M
Sbjct: 136 RNVVSWTSLLCGLANAGRIGEARELFNVMPERNVVSWNSMLVGLIRSGQLEEARRVFNEM 195
Query: 131 PIKNVISWNAMIAGYVECCMMGEAIVLF-------------------------------E 159
P+K+ +SWN MIAGY E M EA VLF +
Sbjct: 196 PVKSQVSWNVMIAGYAEHSRMEEARVLFDGMGDRNVVTWTSMISGYCRAGNVQEGYCLFQ 255
Query: 160 EMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMP-----RKNVVSWTAMIGGFAWNGFHK 214
+M ERNVV+WT+MI G+ G +E LF M + N ++ ++ A GF
Sbjct: 256 KMPERNVVSWTAMIGGFAWNGFYKEALLLFLEMKGNYDMKPNDETFISLAYACAGIGFPH 315
Query: 215 ------------------------ESLLLFIEMKGICD--------NGNNCNVQSCNSMI 242
+SL+ M G D N + N QSCNSMI
Sbjct: 316 LGMQFHAHLIINCWDYDDYDGRLFKSLIHMYSMFGFMDFAWYIFFRNSMSYNTQSCNSMI 375
Query: 243 NGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTA 302
NGYIR G+LE+AQ+LFDT+PVRD+ISWTSMI+GY +VGQ++ A YLF+NMPDRDAVAWT
Sbjct: 376 NGYIRIGQLEKAQSLFDTIPVRDKISWTSMINGYFNVGQIAKACYLFNNMPDRDAVAWTV 435
Query: 303 MISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTE 362
M+SG VQNELF EATYLF EMR GV PLN+TFS+L GAAGA A +D GRQ HC+LMKT+
Sbjct: 436 MVSGHVQNELFAEATYLFSEMRVKGVSPLNSTFSILLGAAGAMAYLDQGRQFHCLLMKTQ 495
Query: 363 SESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFE 422
E DLIL+N LISMYAKCG I +AY+IFS M+SRDL+SWNSM+MGFSHHGL +E LKVFE
Sbjct: 496 FEFDLILQNSLISMYAKCGEIGDAYSIFSKMISRDLISWNSMIMGFSHHGLTSEALKVFE 555
Query: 423 SMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRA 482
+ML SGTHPNSVTFLGILSACSHAGL+++GWELF+AM DV+ IQP EHYV M+NLLGRA
Sbjct: 556 AMLTSGTHPNSVTFLGILSACSHAGLLNQGWELFDAMSDVFAIQPQLEHYVCMVNLLGRA 615
Query: 483 GKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVL 542
GK++EAEEF+ +LPFEPD IWGALLG CGF N +A AAKRLLELDPLNAPAHVVL
Sbjct: 616 GKVEEAEEFISKLPFEPDLTIWGALLGVCGFGMINTGVARRAAKRLLELDPLNAPAHVVL 675
Query: 543 CNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEIL 599
CNI+A+ G+ EE +LR +MGLKGVRKVPGCSW++ G +FLSGD+I Q E+L
Sbjct: 676 CNIHASIGQRAEEGQLRKEMGLKGVRKVPGCSWILLKGEPYVFLSGDRIHPQADEML 732
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357482291|ref|XP_003611431.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|355512766|gb|AES94389.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 688 bits (1776), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 349/664 (52%), Positives = 449/664 (67%), Gaps = 72/664 (10%)
Query: 9 SLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM 68
S VVH TS +T Y+K G++++A+ LF +MP RN+V+YNAMLS +LQ+G +A+R F++M
Sbjct: 70 SRVVHWTSMLTNYAKHGYVEQARNLFDIMPHRNIVTYNAMLSAYLQSGMTRQAKRFFDDM 129
Query: 69 PERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFN 128
PERNVVSWTAM+ G A G + +ARK+F+EMPERNVVSWNSMVVGLIRNG+L EARKVF+
Sbjct: 130 PERNVVSWTAMLSGYAGLGWIDDARKVFDEMPERNVVSWNSMVVGLIRNGDLEEARKVFD 189
Query: 129 SMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRA--------- 179
P KNV+SWNAMI GYVE M +A LF+++E RNV+TWTSMISGYCR
Sbjct: 190 DTPDKNVVSWNAMIEGYVENGRMDDAKDLFDQIECRNVITWTSMISGYCRVGDVNEAFRL 249
Query: 180 ----------------------GEVEEGYCLFRRM-----PRKNVVSWTAMIGGFAWNGF 212
G E LF M + N ++ +++ A GF
Sbjct: 250 FQIMPEKNVVSWTAMIGGFAWNGFYREALLLFLDMMTLSDAKPNEETFVSLVYACAGMGF 309
Query: 213 -------HKESLL--------------LFIEMKGICD-----------NGNNCNVQSCNS 240
H + +L + M +C + NC+ QS NS
Sbjct: 310 PCLGKQLHAQMILNRWKLDDYDCRLGRSLVRMYSVCGLMDSARSVFEGDMKNCDDQSFNS 369
Query: 241 MINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPD--RDAV 298
MINGY++ G+L +AQ LFDTVP+R++I+WT MI GYLS GQV A LF +MPD +D++
Sbjct: 370 MINGYVQAGQLHKAQELFDTVPIRNKIAWTCMISGYLSAGQVLKASNLFDDMPDSDKDSI 429
Query: 299 AWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVL 358
AWT MI G VQNEL EA LF EM A G P+N+T++VLFGA G+ A +DLG Q+H +
Sbjct: 430 AWTLMIYGYVQNELIAEAINLFAEMMAQGASPINSTYAVLFGAVGSVAYLDLGWQLHAMQ 489
Query: 359 MKT--ESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANE 416
+KT E E D+ LEN LISMYAKCG I++AY IFSNM RD +SWNSM+MG S HG ANE
Sbjct: 490 LKTIYEYEYDVYLENSLISMYAKCGEIEDAYRIFSNMNCRDKISWNSMIMGLSDHGRANE 549
Query: 417 TLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMI 476
L ++E+MLE G +P++VTFLG+L+AC+HAG V +G ELF+ M + Y +QPG EHYVS+I
Sbjct: 550 ALNMYETMLEFGVYPDAVTFLGVLTACAHAGFVDKGCELFSVMLNDYALQPGLEHYVSII 609
Query: 477 NLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNA 536
N+LGRAG++K+AEEFVLRLP EP+H IWGAL+G CG + +A+IA AA RLLELDPLNA
Sbjct: 610 NILGRAGRVKDAEEFVLRLPVEPNHTIWGALIGVCGLSKTDADIARRAATRLLELDPLNA 669
Query: 537 PAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVA 596
P HV LCNIYAA+ RH+EE LR +M +KGVRK PGCSW++ G + F SGD++
Sbjct: 670 PGHVTLCNIYAANDRHLEETSLRREMRMKGVRKAPGCSWILVKGKVHAFSSGDRLDPLAE 729
Query: 597 EILL 600
E+LL
Sbjct: 730 EMLL 733
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|18398422|ref|NP_564401.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|193806407|sp|P0C7R0.1|PPR69_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g32415, mitochondrial; Flags: Precursor gi|332193363|gb|AEE31484.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 640 bits (1651), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 330/664 (49%), Positives = 445/664 (67%), Gaps = 75/664 (11%)
Query: 11 VVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPE 70
VV+ TS ++KY+K G++DEA+ LF++MP+RN+V+ NAML+G+++ R++EA LF EMP
Sbjct: 77 VVYWTSLLSKYAKTGYLDEARVLFEVMPERNIVTCNAMLTGYVKCRRMNEAWTLFREMP- 135
Query: 71 RNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSM 130
+NVVSWT M+ L D GR +A +LF+EMPERNVVSWN++V GLIRNG++ +A++VF++M
Sbjct: 136 KNVVSWTVMLTALCDDGRSEDAVELFDEMPERNVVSWNTLVTGLIRNGDMEKAKQVFDAM 195
Query: 131 PIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTS------------------- 171
P ++V+SWNAMI GY+E M EA +LF +M E+NVVTWTS
Sbjct: 196 PSRDVVSWNAMIKGYIENDGMEEAKLLFGDMSEKNVVTWTSMVYGYCRYGDVREAYRLFC 255
Query: 172 ------------MISGYCRAGEVEEGYCLFRRMPR---------KNVVSWTAMIGGFA-- 208
MISG+ E LF M + + ++S GG
Sbjct: 256 EMPERNIVSWTAMISGFAWNELYREALMLFLEMKKDVDAVSPNGETLISLAYACGGLGVE 315
Query: 209 ----------------W-----NGFHKESLLLFIEMKGICDNGNNC-----NVQSCNSMI 242
W +G +SL+ G+ + + ++QSCN +I
Sbjct: 316 FRRLGEQLHAQVISNGWETVDHDGRLAKSLVHMYASSGLIASAQSLLNESFDLQSCNIII 375
Query: 243 NGYIRFGRLEEAQNLFDTVP-VRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWT 301
N Y++ G LE A+ LF+ V + D++SWTSMIDGYL G VS A+ LF + D+D V WT
Sbjct: 376 NRYLKNGDLERAETLFERVKSLHDKVSWTSMIDGYLEAGDVSRAFGLFQKLHDKDGVTWT 435
Query: 302 AMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKT 361
MISGLVQNELF EA L +M G+ PLN+T+SVL +AGAT+N+D G+ IHCV+ KT
Sbjct: 436 VMISGLVQNELFAEAASLLSDMVRCGLKPLNSTYSVLLSSAGATSNLDQGKHIHCVIAKT 495
Query: 362 ES--ESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLK 419
+ + DLIL+N L+SMYAKCG I++AY IF+ MV +D VSWNSM+MG SHHGLA++ L
Sbjct: 496 TACYDPDLILQNSLVSMYAKCGAIEDAYEIFAKMVQKDTVSWNSMIMGLSHHGLADKALN 555
Query: 420 VFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLL 479
+F+ ML+SG PNSVTFLG+LSACSH+GL++RG ELF AM + Y IQPG +HY+SMI+LL
Sbjct: 556 LFKEMLDSGKKPNSVTFLGVLSACSHSGLITRGLELFKAMKETYSIQPGIDHYISMIDLL 615
Query: 480 GRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFC--EGNAE-IAEHAAKRLLELDPLNA 536
GRAGK+KEAEEF+ LPF PDH ++GALLG CG + +AE IAE AA RLLELDP+NA
Sbjct: 616 GRAGKLKEAEEFISALPFTPDHTVYGALLGLCGLNWRDKDAEGIAERAAMRLLELDPVNA 675
Query: 537 PAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVA 596
P HV LCN+YA GRH E ++R +MG+KGV+K PGCSW++ NG +FLSGDK ++ A
Sbjct: 676 PGHVALCNVYAGLGRHDMEKEMRKEMGIKGVKKTPGCSWVVVNGRANVFLSGDKSASEAA 735
Query: 597 EILL 600
+++L
Sbjct: 736 QMVL 739
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|8920616|gb|AAF81338.1|AC007767_18 Contains similarity to a hypothetical protein F19I3.26 gi|7485810 from Arabidopsis thaliana BAC F19I3 gb|AC004238. It contains a PPR repeat domain PF|01535. ESTs gb|AV539170, gb|AV551571, gb|AA597781, gb|AV544524, gb|AV531577 and gb|AV533492 come from this gene [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 639 bits (1648), Expect = e-180, Method: Compositional matrix adjust.
Identities = 330/664 (49%), Positives = 445/664 (67%), Gaps = 75/664 (11%)
Query: 11 VVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPE 70
VV+ TS ++KY+K G++DEA+ LF++MP+RN+V+ NAML+G+++ R++EA LF EMP
Sbjct: 180 VVYWTSLLSKYAKTGYLDEARVLFEVMPERNIVTCNAMLTGYVKCRRMNEAWTLFREMP- 238
Query: 71 RNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSM 130
+NVVSWT M+ L D GR +A +LF+EMPERNVVSWN++V GLIRNG++ +A++VF++M
Sbjct: 239 KNVVSWTVMLTALCDDGRSEDAVELFDEMPERNVVSWNTLVTGLIRNGDMEKAKQVFDAM 298
Query: 131 PIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTS------------------- 171
P ++V+SWNAMI GY+E M EA +LF +M E+NVVTWTS
Sbjct: 299 PSRDVVSWNAMIKGYIENDGMEEAKLLFGDMSEKNVVTWTSMVYGYCRYGDVREAYRLFC 358
Query: 172 ------------MISGYCRAGEVEEGYCLFRRMPR---------KNVVSWTAMIGGFA-- 208
MISG+ E LF M + + ++S GG
Sbjct: 359 EMPERNIVSWTAMISGFAWNELYREALMLFLEMKKDVDAVSPNGETLISLAYACGGLGVE 418
Query: 209 ----------------W-----NGFHKESLLLFIEMKGICDNGNNC-----NVQSCNSMI 242
W +G +SL+ G+ + + ++QSCN +I
Sbjct: 419 FRRLGEQLHAQVISNGWETVDHDGRLAKSLVHMYASSGLIASAQSLLNESFDLQSCNIII 478
Query: 243 NGYIRFGRLEEAQNLFDTVP-VRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWT 301
N Y++ G LE A+ LF+ V + D++SWTSMIDGYL G VS A+ LF + D+D V WT
Sbjct: 479 NRYLKNGDLERAETLFERVKSLHDKVSWTSMIDGYLEAGDVSRAFGLFQKLHDKDGVTWT 538
Query: 302 AMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKT 361
MISGLVQNELF EA L +M G+ PLN+T+SVL +AGAT+N+D G+ IHCV+ KT
Sbjct: 539 VMISGLVQNELFAEAASLLSDMVRCGLKPLNSTYSVLLSSAGATSNLDQGKHIHCVIAKT 598
Query: 362 ES--ESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLK 419
+ + DLIL+N L+SMYAKCG I++AY IF+ MV +D VSWNSM+MG SHHGLA++ L
Sbjct: 599 TACYDPDLILQNSLVSMYAKCGAIEDAYEIFAKMVQKDTVSWNSMIMGLSHHGLADKALN 658
Query: 420 VFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLL 479
+F+ ML+SG PNSVTFLG+LSACSH+GL++RG ELF AM + Y IQPG +HY+SMI+LL
Sbjct: 659 LFKEMLDSGKKPNSVTFLGVLSACSHSGLITRGLELFKAMKETYSIQPGIDHYISMIDLL 718
Query: 480 GRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFC--EGNAE-IAEHAAKRLLELDPLNA 536
GRAGK+KEAEEF+ LPF PDH ++GALLG CG + +AE IAE AA RLLELDP+NA
Sbjct: 719 GRAGKLKEAEEFISALPFTPDHTVYGALLGLCGLNWRDKDAEGIAERAAMRLLELDPVNA 778
Query: 537 PAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVA 596
P HV LCN+YA GRH E ++R +MG+KGV+K PGCSW++ NG +FLSGDK ++ A
Sbjct: 779 PGHVALCNVYAGLGRHDMEKEMRKEMGIKGVKKTPGCSWVVVNGRANVFLSGDKSASEAA 838
Query: 597 EILL 600
+++L
Sbjct: 839 QMVL 842
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297846216|ref|XP_002890989.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297336831|gb|EFH67248.1| predicted protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 638 bits (1645), Expect = e-180, Method: Compositional matrix adjust.
Identities = 329/666 (49%), Positives = 441/666 (66%), Gaps = 75/666 (11%)
Query: 9 SLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM 68
S V++ TS +TKY+K G++DEA+ LF++MP+RN+V+ NAML+G+++ RL+EA LF EM
Sbjct: 105 SRVIYCTSLLTKYAKAGYLDEARVLFEVMPERNIVTCNAMLTGYVKCRRLNEAWTLFREM 164
Query: 69 PERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFN 128
P +NVVSWT M+ L D GR +A +LF+EMPERNVVSWN++V GLIRNGE +A++VF+
Sbjct: 165 P-KNVVSWTVMLTALCDDGRSDDAVELFDEMPERNVVSWNTLVTGLIRNGETEKAKQVFD 223
Query: 129 SMPIKNVISWNAMIAGYVECCMMGEAIVLFE----------------------------- 159
+MP ++ +SWNAMI GY+E M EA +LFE
Sbjct: 224 AMPSRDAVSWNAMIKGYIENGGMEEAKLLFENMSEKNVVTWTSMVYGYCRYGDVHEAYRL 283
Query: 160 --EMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPR---------KNVVSWTAMIGGFA 208
EM ERNVV+WT+MISG+ E LF M + + ++S GG
Sbjct: 284 FCEMPERNVVSWTAMISGFAWNEFYREALMLFLEMKKDVDAISPNGETLISLAYACGGLG 343
Query: 209 ------------------W-----NGFHKESLLLFIEMKGICDNGNNC-----NVQSCNS 240
W +G +SL+ G+ + + ++QSCN
Sbjct: 344 VGFRRLGEQLHAQVISNGWESVDHDGRLAKSLVHMYASFGLIASAQSLLNESFDLQSCNI 403
Query: 241 MINGYIRFGRLEEAQNLFDTV-PVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVA 299
+I+ Y++ G E A+ LF V + D++SWTSMIDGYL G VS A+ LF + D+D V
Sbjct: 404 IISAYLKNGDFERAETLFRRVESLHDKVSWTSMIDGYLDAGDVSRAFDLFQKLHDKDGVT 463
Query: 300 WTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLM 359
WT MISGLVQNELF EA L +M G+ PLN+T+SVL +AGAT+N+D G+ +HCV+
Sbjct: 464 WTVMISGLVQNELFAEAASLLSDMVRCGLKPLNSTYSVLLSSAGATSNLDQGKHLHCVIA 523
Query: 360 KTES--ESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANET 417
KT + + DLIL+N L+SMYAKCG ID+AY IFS MV +D+VSWNS+++G SHHGLA++
Sbjct: 524 KTTACYDPDLILQNSLVSMYAKCGAIDDAYEIFSKMVRKDIVSWNSVIIGLSHHGLADKA 583
Query: 418 LKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMIN 477
LK+F+ ML+SG PNSVTFLG+LSACSH+GL+++G ELF AM + Y IQPG EHY+SMI+
Sbjct: 584 LKLFKEMLDSGMKPNSVTFLGVLSACSHSGLITKGLELFKAMKETYSIQPGVEHYISMID 643
Query: 478 LLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFC---EGNAEIAEHAAKRLLELDPL 534
LLGRAGK+KEAEEF+ LPF PDH ++GALLG CG A IAE AA RLLELDP+
Sbjct: 644 LLGRAGKLKEAEEFISALPFTPDHTVYGALLGLCGLNWRDRDAAGIAERAAMRLLELDPV 703
Query: 535 NAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQ 594
NAP HV LCN+YA GRH E ++R +MG+KGV+K PGCSW++ NG +FLSGDK ++
Sbjct: 704 NAPGHVALCNMYAGLGRHEMEKEMRKEMGIKGVKKTPGCSWVVVNGRANVFLSGDKSASE 763
Query: 595 VAEILL 600
+++L
Sbjct: 764 AGQMVL 769
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356511265|ref|XP_003524347.1| PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 483 bits (1243), Expect = e-133, Method: Compositional matrix adjust.
Identities = 246/621 (39%), Positives = 368/621 (59%), Gaps = 44/621 (7%)
Query: 5 NHPKSL-----VVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLS 59
N+PK V T +I+ + + G D A +F MP RN VSYNAM+SG+L+N + S
Sbjct: 22 NYPKPHFEDPHTVKCTKAISTHMRNGHCDLALCVFDAMPLRNSVSYNAMISGYLRNAKFS 81
Query: 60 EARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGE 119
AR LF++MP +++ SW M+ G A R+ +AR LF+ MPE++VVSWN+M+ G +R+G
Sbjct: 82 LARDLFDKMPHKDLFSWNLMLTGYARNRRLRDARMLFDSMPEKDVVSWNAMLSGYVRSGH 141
Query: 120 LNEARKVFNSMPIKNVISWNAMIA-------------------------------GYVEC 148
++EAR VF+ MP KN ISWN ++A GYV+
Sbjct: 142 VDEARDVFDRMPHKNSISWNGLLAAYVRSGRLEEARRLFESKSDWELISCNCLMGGYVKR 201
Query: 149 CMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFA 208
M+G+A LF+++ R++++W +MISGY + G++ + LF P ++V +WTAM+ +
Sbjct: 202 NMLGDARQLFDQIPVRDLISWNTMISGYAQDGDLSQARRLFEESPVRDVFTWTAMVYAYV 261
Query: 209 WNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEIS 268
+G E+ +F EM S N MI GY ++ R++ + LF+ +P + S
Sbjct: 262 QDGMLDEARRVFDEMP-------QKREMSYNVMIAGYAQYKRMDMGRELFEEMPFPNIGS 314
Query: 269 WTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGV 328
W MI GY G ++ A LF MP RD+V+W A+I+G QN L+ EA + +EM+ G
Sbjct: 315 WNIMISGYCQNGDLAQARNLFDMMPQRDSVSWAAIIAGYAQNGLYEEAMNMLVEMKRDGE 374
Query: 329 PPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYN 388
+TF A A ++LG+Q+H +++T E ++ N L+ MY KCG ID AY+
Sbjct: 375 SLNRSTFCCALSACADIAALELGKQVHGQVVRTGYEKGCLVGNALVGMYCKCGCIDEAYD 434
Query: 389 IFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGL 448
+F + +D+VSWN+M+ G++ HG + L VFESM+ +G P+ +T +G+LSACSH GL
Sbjct: 435 VFQGVQHKDIVSWNTMLAGYARHGFGRQALTVFESMITAGVKPDEITMVGVLSACSHTGL 494
Query: 449 VSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALL 508
RG E F++M Y I P +HY MI+LLGRAG ++EA+ + +PFEPD WGALL
Sbjct: 495 TDRGTEYFHSMNKDYGITPNSKHYACMIDLLGRAGCLEEAQNLIRNMPFEPDAATWGALL 554
Query: 509 GACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVR 568
GA GN E+ E AA+ + +++P N+ +V+L N+YAASGR V+ K+R+ M GV+
Sbjct: 555 GASRI-HGNMELGEQAAEMVFKMEPHNSGMYVLLSNLYAASGRWVDVSKMRLKMRQIGVQ 613
Query: 569 KVPGCSWLMRNGGIQMFLSGD 589
K PG SW+ I F GD
Sbjct: 614 KTPGYSWVEVQNKIHTFTVGD 634
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359491499|ref|XP_003634283.1| PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 483 bits (1242), Expect = e-133, Method: Compositional matrix adjust.
Identities = 252/636 (39%), Positives = 373/636 (58%), Gaps = 47/636 (7%)
Query: 2 SERNHPKSL--------VVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFL 53
S RN PK+ +V +IT + + G D A LF MP+R+ +S+NAM+SG L
Sbjct: 32 STRNQPKTTSSLATDADIVKWNIAITNHMRNGQCDSALRLFNSMPRRSSISWNAMISGCL 91
Query: 54 QNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVG 113
N + AR+LFE+MP R++VSW MI G + AR LF++MPER+VVSWN+M+ G
Sbjct: 92 SNDKFYLARQLFEKMPTRDLVSWNVMISGCVRYRNLRAARLLFDQMPERDVVSWNAMLSG 151
Query: 114 LIRNGELNEARKVFNSMPIKNVISWNAMIAGYVEC----------------------CMM 151
+NG + EA+++F+ MP KN ISWN M+A YV+ CMM
Sbjct: 152 YAQNGYVKEAKEIFDEMPCKNSISWNGMLAAYVQNGRIEDARRLFESKADWELISWNCMM 211
Query: 152 G---------EAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTA 202
G +A +F+ M ER+ V+W +MISGY + GE+ E LF P ++V +WTA
Sbjct: 212 GGYVKRNRLVDARGIFDRMPERDEVSWNTMISGYAQNGELLEAQRLFEESPVRDVFTWTA 271
Query: 203 MIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVP 262
M+ G+ NG E+ +F D N S N++I GY++ R+++A+ LF+ +P
Sbjct: 272 MVSGYVQNGMLDEARRVF-------DGMPEKNSVSWNAIIAGYVQCKRMDQARELFEAMP 324
Query: 263 VRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFME 322
++ SW +MI GY G ++ A F MP RD+++W A+I+G Q+ EA +LF+E
Sbjct: 325 CQNVSSWNTMITGYAQNGDIAQARNFFDRMPQRDSISWAAIIAGYAQSGYGEEALHLFVE 384
Query: 323 MRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGV 382
M+ G +TF+ A ++LG+Q+H ++K ES + N L+ MY KCG
Sbjct: 385 MKRDGERLNRSTFTSTLSTCAEIAALELGKQVHGRVVKAGLESGCYVGNALLVMYCKCGN 444
Query: 383 IDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSA 442
ID+AY +F + +++VSWN+M+ G++ HG E L +FESM ++G P+ VT +G+LSA
Sbjct: 445 IDDAYIVFEGIEEKEVVSWNTMIAGYARHGFGKEALMLFESMKKTGILPDDVTMVGVLSA 504
Query: 443 CSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHR 502
CSH GLV +G E F +M Y I +HY MI+LLGRAG++ +A+ + +PFEPD
Sbjct: 505 CSHTGLVDKGTEYFYSMTQDYGITANSKHYTCMIDLLGRAGRLDDAQNLMKNMPFEPDAA 564
Query: 503 IWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDM 562
WGALLGA GN E+ E AAK + E++P N+ +V+L N+YAASGR + ++R+ M
Sbjct: 565 TWGALLGASRI-HGNTELGEKAAKMIFEMEPDNSGMYVLLSNLYAASGRWGDVGRMRLRM 623
Query: 563 GLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
+GV+KVPG SW+ I F GD + + I
Sbjct: 624 RDRGVKKVPGYSWVEVQNKIHTFTVGDSVHPERDRI 659
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 600 | ||||||
| TAIR|locus:505006163 | 761 | AT1G32415 "AT1G32415" [Arabido | 0.983 | 0.775 | 0.500 | 7.4e-153 | |
| TAIR|locus:2140235 | 781 | AT4G02750 [Arabidopsis thalian | 0.973 | 0.747 | 0.393 | 6.9e-118 | |
| TAIR|locus:2012295 | 705 | AT1G09410 [Arabidopsis thalian | 0.938 | 0.798 | 0.363 | 2.1e-107 | |
| TAIR|locus:2027554 | 704 | AT1G56690 [Arabidopsis thalian | 0.981 | 0.836 | 0.369 | 6.5e-106 | |
| TAIR|locus:2044797 | 627 | AT2G35030 [Arabidopsis thalian | 0.878 | 0.840 | 0.387 | 2.9e-103 | |
| TAIR|locus:2018092 | 656 | MEF9 "AT1G62260" [Arabidopsis | 0.85 | 0.777 | 0.377 | 9e-93 | |
| TAIR|locus:2054131 | 697 | SLO2 "AT2G13600" [Arabidopsis | 0.953 | 0.820 | 0.336 | 3.1e-90 | |
| TAIR|locus:2151501 | 697 | AT5G46460 [Arabidopsis thalian | 0.896 | 0.771 | 0.333 | 3.3e-86 | |
| TAIR|locus:2055919 | 786 | AT2G22070 "AT2G22070" [Arabido | 0.943 | 0.720 | 0.347 | 5.6e-84 | |
| TAIR|locus:2100392 | 706 | AT3G47840 [Arabidopsis thalian | 0.843 | 0.716 | 0.326 | 1.2e-79 |
| TAIR|locus:505006163 AT1G32415 "AT1G32415" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1491 (529.9 bits), Expect = 7.4e-153, P = 7.4e-153
Identities = 308/615 (50%), Positives = 425/615 (69%)
Query: 4 RNHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARR 63
R PK+ VV T +T G ++A LF MP+RNVVS+N +++G ++NG + +A++
Sbjct: 132 REMPKN-VVSWTVMLTALCDDGRSEDAVELFDEMPERNVVSWNTLVTGLIRNGDMEKAKQ 190
Query: 64 LFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEA 123
+F+ MP R+VVSW AMI G + + EA+ LF +M E+NVV+W SMV G R G++ EA
Sbjct: 191 VFDAMPSRDVVSWNAMIKGYIENDGMEEAKLLFGDMSEKNVVTWTSMVYGYCRYGDVREA 250
Query: 124 RKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEER-NVVT--WTSMIS-GYCRA 179
++F MP +N++SW AMI+G+ + EA++LF EM++ + V+ ++IS Y
Sbjct: 251 YRLFCEMPERNIVSWTAMISGFAWNELYREALMLFLEMKKDVDAVSPNGETLISLAYACG 310
Query: 180 GEVEEGYCLFRRMPRK---NVVS--WTAMI--GGFAWNGFHK-ESLLLFIEMKGICDNGN 231
G E FRR+ + V+S W + G A + H S L + + +
Sbjct: 311 GLGVE----FRRLGEQLHAQVISNGWETVDHDGRLAKSLVHMYASSGLIASAQSLLNE-- 364
Query: 232 NCNVQSCNSMINGYIRFGRLEEAQNLFDTVP-VRDEISWTSMIDGYLSVGQVSNAYYLFH 290
+ ++QSCN +IN Y++ G LE A+ LF+ V + D++SWTSMIDGYL G VS A+ LF
Sbjct: 365 SFDLQSCNIIINRYLKNGDLERAETLFERVKSLHDKVSWTSMIDGYLEAGDVSRAFGLFQ 424
Query: 291 NMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDL 350
+ D+D V WT MISGLVQNELF EA L +M G+ PLN+T+SVL +AGAT+N+D
Sbjct: 425 KLHDKDGVTWTVMISGLVQNELFAEAASLLSDMVRCGLKPLNSTYSVLLSSAGATSNLDQ 484
Query: 351 GRQIHCVLMKTES--ESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGF 408
G+ IHCV+ KT + + DLIL+N L+SMYAKCG I++AY IF+ MV +D VSWNSM+MG
Sbjct: 485 GKHIHCVIAKTTACYDPDLILQNSLVSMYAKCGAIEDAYEIFAKMVQKDTVSWNSMIMGL 544
Query: 409 SHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPG 468
SHHGLA++ L +F+ ML+SG PNSVTFLG+LSACSH+GL++RG ELF AM + Y IQPG
Sbjct: 545 SHHGLADKALNLFKEMLDSGKKPNSVTFLGVLSACSHSGLITRGLELFKAMKETYSIQPG 604
Query: 469 PEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACG--FCEGNAE-IAEHAA 525
+HY+SMI+LLGRAGK+KEAEEF+ LPF PDH ++GALLG CG + + +AE IAE AA
Sbjct: 605 IDHYISMIDLLGRAGKLKEAEEFISALPFTPDHTVYGALLGLCGLNWRDKDAEGIAERAA 664
Query: 526 KRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMF 585
RLLELDP+NAP HV LCN+YA GRH E ++R +MG+KGV+K PGCSW++ NG +F
Sbjct: 665 MRLLELDPVNAPGHVALCNVYAGLGRHDMEKEMRKEMGIKGVKKTPGCSWVVVNGRANVF 724
Query: 586 LSGDKIPAQVAEILL 600
LSGDK ++ A+++L
Sbjct: 725 LSGDKSASEAAQMVL 739
|
|
| TAIR|locus:2140235 AT4G02750 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1161 (413.8 bits), Expect = 6.9e-118, P = 6.9e-118
Identities = 233/592 (39%), Positives = 353/592 (59%)
Query: 7 PKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFE 66
P+ V I+ Y + G + A+ LF MP+R++VS+N M+ G+++N L +AR LFE
Sbjct: 91 PRWSSVSYNGMISGYLRNGEFELARKLFDEMPERDLVSWNVMIKGYVRNRNLGKARELFE 150
Query: 67 EMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKV 126
MPER+V SW M+ G A G V +AR +F+ MPE+N VSWN+++ ++N ++ EA +
Sbjct: 151 IMPERDVCSWNTMLSGYAQNGCVDDARSVFDRMPEKNDVSWNALLSAYVQNSKMEEACML 210
Query: 127 FNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGY 186
F S ++SWN ++ G+V+ + EA F+ M R+VV+W ++I+GY ++G+++E
Sbjct: 211 FKSRENWALVSWNCLLGGFVKKKKIVEARQFFDSMNVRDVVSWNTIITGYAQSGKIDEAR 270
Query: 187 CLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYI 246
LF P ++V +WTAM+ G+ N +E+ LF +M N S N+M+ GY+
Sbjct: 271 QLFDESPVQDVFTWTAMVSGYIQNRMVEEARELFDKMP-------ERNEVSWNAMLAGYV 323
Query: 247 RFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISG 306
+ R+E A+ LFD +P R+ +W +MI GY G++S A LF MP RD V+W AMI+G
Sbjct: 324 QGERMEMAKELFDVMPCRNVSTWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAG 383
Query: 307 LVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESD 366
Q+ EA LF++M G ++FS ++LG+Q+H L+K E+
Sbjct: 384 YSQSGHSFEALRLFVQMEREGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYETG 443
Query: 367 LILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLE 426
+ N L+ MY KCG I+ A ++F M +D+VSWN+M+ G+S HG L+ FESM
Sbjct: 444 CFVGNALLLMYCKCGSIEEANDLFKEMAGKDIVSWNTMIAGYSRHGFGEVALRFFESMKR 503
Query: 427 SGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIK 486
G P+ T + +LSACSH GLV +G + F M Y + P +HY M++LLGRAG ++
Sbjct: 504 EGLKPDDATMVAVLSACSHTGLVDKGRQYFYTMTQDYGVMPNSQHYACMVDLLGRAGLLE 563
Query: 487 EAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIY 546
+A + +PFEPD IWG LLGA GN E+AE AA ++ ++P N+ +V+L N+Y
Sbjct: 564 DAHNLMKNMPFEPDAAIWGTLLGASRV-HGNTELAETAADKIFAMEPENSGMYVLLSNLY 622
Query: 547 AASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
A+SGR + KLR+ M KGV+KVPG SW+ F GD+ + EI
Sbjct: 623 ASSGRWGDVGKLRVRMRDKGVKKVPGYSWIEIQNKTHTFSVGDEFHPEKDEI 674
|
|
| TAIR|locus:2012295 AT1G09410 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1062 (378.9 bits), Expect = 2.1e-107, P = 2.1e-107
Identities = 208/572 (36%), Positives = 343/572 (59%)
Query: 18 ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWT 77
IT S+ G I EA+ LF +++ S+N+M++G+ N +AR+LF+EMP+RN++SW
Sbjct: 24 ITHLSRIGKIHEARKLFDSCDSKSISSWNSMVAGYFANLMPRDARKLFDEMPDRNIISWN 83
Query: 78 AMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVIS 137
++ G G + EARK+F+ MPERNVVSW ++V G + NG+++ A +F MP KN +S
Sbjct: 84 GLVSGYMKNGEIDEARKVFDLMPERNVVSWTALVKGYVHNGKVDVAESLFWKMPEKNKVS 143
Query: 138 WNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNV 197
W M+ G+++ + +A L+E + +++ + TSMI G C+ G V+E +F M ++V
Sbjct: 144 WTVMLIGFLQDGRIDDACKLYEMIPDKDNIARTSMIHGLCKEGRVDEAREIFDEMSERSV 203
Query: 198 VSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNL 257
++WT M+ G+ N ++ +F M V S SM+ GY++ GR+E+A+ L
Sbjct: 204 ITWTTMVTGYGQNNRVDDARKIFDVMP------EKTEV-SWTSMLMGYVQNGRIEDAEEL 256
Query: 258 FDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEAT 317
F+ +PV+ I+ +MI G G+++ A +F +M +R+ +W +I +N +EA
Sbjct: 257 FEVMPVKPVIACNAMISGLGQKGEIAKARRVFDSMKERNDASWQTVIKIHERNGFELEAL 316
Query: 318 YLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMY 377
LF+ M+ GV P T + + A++ G+Q+H L++ + + D+ + + L++MY
Sbjct: 317 DLFILMQKQGVRPTFPTLISILSVCASLASLHHGKQVHAQLVRCQFDVDVYVASVLMTMY 376
Query: 378 AKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVF-ESMLESGTHPNSVTF 436
KCG + + IF S+D++ WNS++ G++ HGL E LKVF E L T PN VTF
Sbjct: 377 IKCGELVKSKLIFDRFPSKDIIMWNSIISGYASHGLGEEALKVFCEMPLSGSTKPNEVTF 436
Query: 437 LGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLP 496
+ LSACS+AG+V G +++ +M V+ ++P HY M+++LGRAG+ EA E + +
Sbjct: 437 VATLSACSYAGMVEEGLKIYESMESVFGVKPITAHYACMVDMLGRAGRFNEAMEMIDSMT 496
Query: 497 FEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEH 556
EPD +WG+LLGAC ++AE AK+L+E++P N+ +++L N+YA+ GR +
Sbjct: 497 VEPDAAVWGSLLGACR-THSQLDVAEFCAKKLIEIEPENSGTYILLSNMYASQGRWADVA 555
Query: 557 KLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSG 588
+LR M + VRK PGCSW + F G
Sbjct: 556 ELRKLMKTRLVRKSPGCSWTEVENKVHAFTRG 587
|
|
| TAIR|locus:2027554 AT1G56690 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1048 (374.0 bits), Expect = 6.5e-106, P = 6.5e-106
Identities = 221/598 (36%), Positives = 341/598 (57%)
Query: 4 RNHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARR 63
R + S V+ + I++ S+ G I+EA+ F + + + S+N+++SG+ NG EAR+
Sbjct: 10 RTYLTSTGVNCSFEISRLSRIGKINEARKFFDSLQFKAIGSWNSIVSGYFSNGLPKEARQ 69
Query: 64 LFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEA 123
LF+EM ERNVVSW ++ G + EAR +FE MPERNVVSW +MV G ++ G + EA
Sbjct: 70 LFDEMSERNVVSWNGLVSGYIKNRMIVEARNVFELMPERNVVSWTAMVKGYMQEGMVGEA 129
Query: 124 RKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVE 183
+F MP +N +SW M G ++ + +A L++ M ++VV T+MI G CR G V+
Sbjct: 130 ESLFWRMPERNEVSWTVMFGGLIDDGRIDKARKLYDMMPVKDVVASTNMIGGLCREGRVD 189
Query: 184 EGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMIN 243
E +F M +NVV+WT MI G+ N + LF M V S SM+
Sbjct: 190 EARLIFDEMRERNVVTWTTMITGYRQNNRVDVARKLFEVMP------EKTEV-SWTSMLL 242
Query: 244 GYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAM 303
GY GR+E+A+ F+ +P++ I+ +MI G+ VG++S A +F M DRD W M
Sbjct: 243 GYTLSGRIEDAEEFFEVMPMKPVIACNAMIVGFGEVGEISKARRVFDLMEDRDNATWRGM 302
Query: 304 ISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTES 363
I + +EA LF +M+ GV P + + A++ GRQ+H L++ +
Sbjct: 303 IKAYERKGFELEALDLFAQMQKQGVRPSFPSLISILSVCATLASLQYGRQVHAHLVRCQF 362
Query: 364 ESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFES 423
+ D+ + + L++MY KCG + A +F S+D++ WNS++ G++ HGL E LK+F
Sbjct: 363 DDDVYVASVLMTMYVKCGELVKAKLVFDRFSSKDIIMWNSIISGYASHGLGEEALKIFHE 422
Query: 424 MLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAG 483
M SGT PN VT + IL+ACS+AG + G E+F +M + + P EHY +++LGRAG
Sbjct: 423 MPSSGTMPNKVTLIAILTACSYAGKLEEGLEIFESMESKFCVTPTVEHYSCTVDMLGRAG 482
Query: 484 KIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLC 543
++ +A E + + +PD +WGALLGAC ++AE AAK+L E +P NA +V+L
Sbjct: 483 QVDKAMELIESMTIKPDATVWGALLGACK-THSRLDLAEVAAKKLFENEPDNAGTYVLLS 541
Query: 544 NIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGD-KIPAQVAEILL 600
+I A+ + + +R +M V K PGCSW+ + MF G K + A IL+
Sbjct: 542 SINASRSKWGDVAVVRKNMRTNNVSKFPGCSWIEVGKKVHMFTRGGIKNHPEQAMILM 599
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| TAIR|locus:2044797 AT2G35030 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1023 (365.2 bits), Expect = 2.9e-103, P = 2.9e-103
Identities = 209/539 (38%), Positives = 326/539 (60%)
Query: 56 GRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPER-NVVSWNSMVVGL 114
G+++EAR+LF+ +PER+VV+WT +I G G + EAR+LF+ + R NVV+W +MV G
Sbjct: 60 GKIAEARKLFDGLPERDVVTWTHVITGYIKLGDMREARELFDRVDSRKNVVTWTAMVSGY 119
Query: 115 IRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMIS 174
+R+ +L+ A +F MP +NV+SWN MI GY + + +A+ LF+EM ERN+V+W SM+
Sbjct: 120 LRSKQLSIAEMLFQEMPERNVVSWNTMIDGYAQSGRIDKALELFDEMPERNIVSWNSMVK 179
Query: 175 GYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCN 234
+ G ++E LF RMPR++VVSWTAM+ G A NG E+ LF D N
Sbjct: 180 ALVQRGRIDEAMNLFERMPRRDVVSWTAMVDGLAKNGKVDEARRLF-------DCMPERN 232
Query: 235 VQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPD 294
+ S N+MI GY + R++EA LF +P RD SW +MI G++ +++ A LF MP+
Sbjct: 233 IISWNAMITGYAQNNRIDEADQLFQVMPERDFASWNTMITGFIRNREMNKACGLFDRMPE 292
Query: 295 RDAVAWTAMISGLVQNELFVEATYLFMEMRAHG-VPPLNATFSVLFGAAGATANIDLGRQ 353
++ ++WT MI+G V+N+ EA +F +M G V P T+ + A A + G+Q
Sbjct: 293 KNVISWTTMITGYVENKENEEALNVFSKMLRDGSVKPNVGTYVSILSACSDLAGLVEGQQ 352
Query: 354 IHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSN--MVSRDLVSWNSMVMGFSHH 411
IH ++ K+ + + I+ + L++MY+K G + A +F N + RDL+SWNSM+ ++HH
Sbjct: 353 IHQLISKSVHQKNEIVTSALLNMYSKSGELIAARKMFDNGLVCQRDLISWNSMIAVYAHH 412
Query: 412 GLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEH 471
G E ++++ M + G P++VT+L +L ACSHAGLV +G E F + + EH
Sbjct: 413 GHGKEAIEMYNQMRKHGFKPSAVTYLNLLFACSHAGLVEKGMEFFKDLVRDESLPLREEH 472
Query: 472 YVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLEL 531
Y +++L GRAG++K+ F+ +GA+L AC IA+ K++LE
Sbjct: 473 YTCLVDLCGRAGRLKDVTNFINCDDARLSRSFYGAILSACNV-HNEVSIAKEVVKKVLET 531
Query: 532 DPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDK 590
+A +V++ NIYAA+G+ E ++RM M KG++K PGCSW+ +F+ GDK
Sbjct: 532 GSDDAGTYVLMSNIYAANGKREEAAEMRMKMKEKGLKKQPGCSWVKVGKQNHLFVVGDK 590
|
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| TAIR|locus:2018092 MEF9 "AT1G62260" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 924 (330.3 bits), Expect = 9.0e-93, P = 9.0e-93
Identities = 204/541 (37%), Positives = 312/541 (57%)
Query: 58 LSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRN 117
L EAR+LF+EMP R+ SW MI G A R+ EA LFE+MPERN VSW++M+ G +N
Sbjct: 121 LEEARKLFDEMPSRDSFSWNTMISGYAKNRRIGEALLLFEKMPERNAVSWSAMITGFCQN 180
Query: 118 GELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEM------EERNVVTWTS 171
GE++ A +F MP+K+ A++AG ++ + EA + + E V + +
Sbjct: 181 GEVDSAVVLFRKMPVKDSSPLCALVAGLIKNERLSEAAWVLGQYGSLVSGREDLVYAYNT 240
Query: 172 MISGYCRAGEVEEGYCLFRRMPR---------------KNVVSWTAMIGGFAWNGFHKES 216
+I GY + G+VE CLF ++P KNVVSW +MI + G +
Sbjct: 241 LIVGYGQRGQVEAARCLFDQIPDLCGDDHGGEFRERFCKNVVSWNSMIKAYLKVGDVVSA 300
Query: 217 LLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGY 276
LLF +MK D + S N+MI+GY+ R+E+A LF +P RD SW M+ GY
Sbjct: 301 RLLFDQMK---DR----DTISWNTMIDGYVHVSRMEDAFALFSEMPNRDAHSWNMMVSGY 353
Query: 277 LSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFS 336
SVG V A + F P++ V+W ++I+ +N+ + EA LF+ M G P T +
Sbjct: 354 ASVGNVELARHYFEKTPEKHTVSWNSIIAAYEKNKDYKEAVDLFIRMNIEGEKPDPHTLT 413
Query: 337 VLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNM-VS 395
L A+ N+ LG Q+H +++KT D+ + N LI+MY++CG I + IF M +
Sbjct: 414 SLLSASTGLVNLRLGMQMHQIVVKTVIP-DVPVHNALITMYSRCGEIMESRRIFDEMKLK 472
Query: 396 RDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWEL 455
R++++WN+M+ G++ HG A+E L +F SM +G +P+ +TF+ +L+AC+HAGLV
Sbjct: 473 REVITWNAMIGGYAFHGNASEALNLFGSMKSNGIYPSHITFVSVLNACAHAGLVDEAKAQ 532
Query: 456 FNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCE 515
F +M VYKI+P EHY S++N+ G+ +EA + +PFEPD +WGALL AC
Sbjct: 533 FVSMMSVYKIEPQMEHYSSLVNVTSGQGQFEEAMYIITSMPFEPDKTVWGALLDACRIYN 592
Query: 516 GNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSW 575
N +A AA+ + L+P ++ +V+L N+YA G E ++RM+M K ++K G SW
Sbjct: 593 -NVGLAHVAAEAMSRLEPESSTPYVLLYNMYADMGLWDEASQVRMNMESKRIKKERGSSW 651
Query: 576 L 576
+
Sbjct: 652 V 652
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| TAIR|locus:2054131 SLO2 "AT2G13600" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 900 (321.9 bits), Expect = 3.1e-90, P = 3.1e-90
Identities = 198/589 (33%), Positives = 328/589 (55%)
Query: 18 ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWT 77
I YSK G +++ + +F MPQRN+ ++N++++G + G L EA LF MPER+ +W
Sbjct: 62 IDAYSKCGSLEDGRQVFDKMPQRNIYTWNSVVTGLTKLGFLDEADSLFRSMPERDQCTWN 121
Query: 78 AMICGLADAGRVCEARKLFEEMPERNVV----SWNSMVVGLIRNGELNEARKVFNSM--- 130
+M+ G A R EA F M + V S+ S++ ++N+ +V + +
Sbjct: 122 SMVSGFAQHDRCEEALCYFAMMHKEGFVLNEYSFASVLSACSGLNDMNKGVQVHSLIAKS 181
Query: 131 P-IKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLF 189
P + +V +A++ Y +C + +A +F+EM +RNVV+W S+I+ + + G E +F
Sbjct: 182 PFLSDVYIGSALVDMYSKCGNVNDAQRVFDEMGDRNVVSWNSLITCFEQNGPAVEALDVF 241
Query: 190 RRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKG-ICDNGNNCN-VQSCNSMINGYIR 247
+ M V + ++ + E+ G + N N + N+ ++ Y +
Sbjct: 242 QMMLESRVEPDEVTLASVISACASLSAIKVGQEVHGRVVKNDKLRNDIILSNAFVDMYAK 301
Query: 248 FGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGL 307
R++EA+ +FD++P+R+ I+ TSMI GY A +F M +R+ V+W A+I+G
Sbjct: 302 CSRIKEARFIFDSMPIRNVIAETSMISGYAMAASTKAARLMFTKMAERNVVSWNALIAGY 361
Query: 308 VQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMK------T 361
QN EA LF ++ V P + +F+ + A A + LG Q H ++K +
Sbjct: 362 TQNGENEEALSLFCLLKRESVCPTHYSFANILKACADLAELHLGMQAHVHVLKHGFKFQS 421
Query: 362 ESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVF 421
E D+ + N LI MY KCG ++ Y +F M+ RD VSWN+M++GF+ +G NE L++F
Sbjct: 422 GEEDDIFVGNSLIDMYVKCGCVEEGYLVFRKMMERDCVSWNAMIIGFAQNGYGNEALELF 481
Query: 422 ESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGR 481
MLESG P+ +T +G+LSAC HAG V G F++M + + P +HY M++LLGR
Sbjct: 482 REMLESGEKPDHITMIGVLSACGHAGFVEEGRHYFSSMTRDFGVAPLRDHYTCMVDLLGR 541
Query: 482 AGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVV 541
AG ++EA+ + +P +PD IWG+LL AC N + ++ A++LLE++P N+ +V+
Sbjct: 542 AGFLEEAKSMIEEMPMQPDSVIWGSLLAACKV-HRNITLGKYVAEKLLEVEPSNSGPYVL 600
Query: 542 LCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDK 590
L N+YA G+ + +R M +GV K PGCSW+ G +F+ DK
Sbjct: 601 LSNMYAELGKWEDVMNVRKSMRKEGVTKQPGCSWIKIQGHDHVFMVKDK 649
|
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| TAIR|locus:2151501 AT5G46460 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 862 (308.5 bits), Expect = 3.3e-86, P = 3.3e-86
Identities = 183/549 (33%), Positives = 302/549 (55%)
Query: 48 MLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSW 107
++ L + R+ EAR +F ++P +V +T MI G + R+ +A LF+EMP R+VVSW
Sbjct: 41 LICNHLLSRRIDEAREVFNQVPSPHVSLYTKMITGYTRSNRLVDALNLFDEMPVRDVVSW 100
Query: 108 NSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVV 167
NSM+ G + G++N A K+F+ MP ++V+SW AM+ G + +A LF +M ++
Sbjct: 101 NSMISGCVECGDMNTAVKLFDEMPERSVVSWTAMVNGCFRSGKVDQAERLFYQMPVKDTA 160
Query: 168 TWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGIC 227
W SM+ GY + G+V++ LF++MP KNV+SWT MI G N E+L LF M C
Sbjct: 161 AWNSMVHGYLQFGKVDDALKLFKQMPGKNVISWTTMICGLDQNERSGEALDLFKNMLRCC 220
Query: 228 DNGNN----CNVQSCNSMINGYIRFGRLEEAQNLFDTVP-VRDEISWTSMIDGYLSVGQV 282
+ C + +C + ++ + L + + +E S+I Y + ++
Sbjct: 221 IKSTSRPFTCVITACANAPAFHMGI----QVHGLIIKLGFLYEEYVSASLITFYANCKRI 276
Query: 283 SNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAA 342
++ +F WTA++SG N+ +A +F M + + P +TF+ +
Sbjct: 277 GDSRKVFDEKVHEQVAVWTALLSGYSLNKKHEDALSIFSGMLRNSILPNQSTFASGLNSC 336
Query: 343 GATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWN 402
A +D G+++H V +K E+D + N L+ MY+ G +++A ++F + + +VSWN
Sbjct: 337 SALGTLDWGKEMHGVAVKLGLETDAFVGNSLVVMYSDSGNVNDAVSVFIKIFKKSIVSWN 396
Query: 403 SMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFD- 461
S+++G + HG +F M+ P+ +TF G+LSACSH G + +G +LF M
Sbjct: 397 SIIVGCAQHGRGKWAFVIFGQMIRLNKEPDEITFTGLLSACSHCGFLEKGRKLFYYMSSG 456
Query: 462 VYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIA 521
+ I +HY M+++LGR GK+KEAEE + R+ +P+ +W ALL AC + +
Sbjct: 457 INHIDRKIQHYTCMVDILGRCGKLKEAEELIERMVVKPNEMVWLALLSACRM-HSDVDRG 515
Query: 522 EHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGG 581
E AA + LD ++ A+V+L NIYA++GR KLR+ M G+ K PG SW++ G
Sbjct: 516 EKAAAAIFNLDSKSSAAYVLLSNIYASAGRWSNVSKLRVKMKKNGIMKKPGSSWVVIRGK 575
Query: 582 IQMFLSGDK 590
F SGD+
Sbjct: 576 KHEFFSGDQ 584
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| TAIR|locus:2055919 AT2G22070 "AT2G22070" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 841 (301.1 bits), Expect = 5.6e-84, P = 5.6e-84
Identities = 202/582 (34%), Positives = 328/582 (56%)
Query: 18 ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNV---- 73
++ YSKRG +D F +PQR+ VS+ M+ G+ G+ +A R+ +M + +
Sbjct: 87 LSAYSKRGDMDSTCEFFDQLPQRDSVSWTTMIVGYKNIGQYHKAIRVMGDMVKEGIEPTQ 146
Query: 74 VSWTAMICGLADAGRVCEARKLFEEMPER-----NVVSWNSMVVGLIRNGELNEARKVFN 128
+ T ++ +A A R E K + NV NS++ + G+ A+ VF+
Sbjct: 147 FTLTNVLASVA-ATRCMETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAKFVFD 205
Query: 129 SMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCL 188
M ++++ SWNAMIA +++ M A+ FE+M ER++VTW SMISG+ + G +
Sbjct: 206 RMVVRDISSWNAMIALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGFNQRGYDLRALDI 265
Query: 189 FRRMPRKNVVSWTAMIGGFAWNGF-HKESLLLFIEMKG-ICDNGNNCNVQSCNSMINGYI 246
F +M R +++S + + E L + ++ I G + + N++I+ Y
Sbjct: 266 FSKMLRDSLLSPDRFTLASVLSACANLEKLCIGKQIHSHIVTTGFDISGIVLNALISMYS 325
Query: 247 RFGRLEEAQNLFDTVPVRD-EIS-WTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMI 304
R G +E A+ L + +D +I +T+++DGY+ +G ++ A +F ++ DRD VAWTAMI
Sbjct: 326 RCGGVETARRLIEQRGTKDLKIEGFTALLDGYIKLGDMNQAKNIFVSLKDRDVVAWTAMI 385
Query: 305 SGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESE 364
G Q+ + EA LF M G P + T + + A + A++ G+QIH +K+
Sbjct: 386 VGYEQHGSYGEAINLFRSMVGGGQRPNSYTLAAMLSVASSLASLSHGKQIHGSAVKSGEI 445
Query: 365 SDLILENCLISMYAKCGVIDNAYNIFSNM-VSRDLVSWNSMVMGFSHHGLANETLKVFES 423
+ + N LI+MYAK G I +A F + RD VSW SM++ + HG A E L++FE+
Sbjct: 446 YSVSVSNALITMYAKAGNITSASRAFDLIRCERDTVSWTSMIIALAQHGHAEEALELFET 505
Query: 424 MLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAG 483
ML G P+ +T++G+ SAC+HAGLV++G + F+ M DV KI P HY M++L GRAG
Sbjct: 506 MLMEGLRPDHITYVGVFSACTHAGLVNQGRQYFDMMKDVDKIIPTLSHYACMVDLFGRAG 565
Query: 484 KIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLC 543
++EA+EF+ ++P EPD WG+LL AC + N ++ + AA+RLL L+P N+ A+ L
Sbjct: 566 LLQEAQEFIEKMPIEPDVVTWGSLLSACRVHK-NIDLGKVAAERLLLLEPENSGAYSALA 624
Query: 544 NIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMF 585
N+Y+A G+ E K+R M V+K G SW+ + +F
Sbjct: 625 NLYSACGKWEEAAKIRKSMKDGRVKKEQGFSWIEVKHKVHVF 666
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| TAIR|locus:2100392 AT3G47840 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 708 (254.3 bits), Expect = 1.2e-79, Sum P(2) = 1.2e-79
Identities = 172/526 (32%), Positives = 277/526 (52%)
Query: 87 GRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYV 146
G++ ++ ++F EMP RN V+W +++ GL+ G E F+ M +S A +
Sbjct: 157 GKIDKSCRVFSEMPFRNAVTWTAIITGLVHAGRYKEGLTYFSEMSRSEELSDTYTFAIAL 216
Query: 147 ECCM------MGEAIVLFEEMEERNVVTW----TSMISGYCRAGEVEEGYCLFRRMPRKN 196
+ C G+AI + R VT S+ + Y GE+++G CLF M ++
Sbjct: 217 KACAGLRQVKYGKAI--HTHVIVRGFVTTLCVANSLATMYTECGEMQDGLCLFENMSERD 274
Query: 197 VVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQN 256
VVSWT++I + G +++ FI+M+ ++ N Q+ SM + RL +
Sbjct: 275 VVSWTSLIVAYKRIGQEVKAVETFIKMR---NSQVPPNEQTFASMFSACASLSRLVWGEQ 331
Query: 257 LFDTV---PVRDEISWT-SMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNEL 312
L V + D +S + SM+ Y + G + +A LF M RD ++W+ +I G Q
Sbjct: 332 LHCNVLSLGLNDSLSVSNSMMKMYSTCGNLVSASVLFQGMRCRDIISWSTIIGGYCQAGF 391
Query: 313 FVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENC 372
E F MR G P + + L +G A I+ GRQ+H + + E + + +
Sbjct: 392 GEEGFKYFSWMRQSGTKPTDFALASLLSVSGNMAVIEGGRQVHALALCFGLEQNSTVRSS 451
Query: 373 LISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPN 432
LI+MY+KCG I A IF D+VS +M+ G++ HG + E + +FE L+ G P+
Sbjct: 452 LINMYSKCGSIKEASMIFGETDRDDIVSLTAMINGYAEHGKSKEAIDLFEKSLKVGFRPD 511
Query: 433 SVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFV 492
SVTF+ +L+AC+H+G + G+ FN M + Y ++P EHY M++LL RAG++ +AE+ +
Sbjct: 512 SVTFISVLTACTHSGQLDLGFHYFNMMQETYNMRPAKEHYGCMVDLLCRAGRLSDAEKMI 571
Query: 493 LRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRH 552
+ ++ D +W LL AC +G+ E AA+R+LELDP A A V L NIY+++G
Sbjct: 572 NEMSWKKDDVVWTTLLIACK-AKGDIERGRRAAERILELDPTCATALVTLANIYSSTGNL 630
Query: 553 VEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
E +R +M KGV K PG S + + F+SGD+ Q +I
Sbjct: 631 EEAANVRKNMKAKGVIKEPGWSSIKIKDCVSAFVSGDRFHPQSEDI 676
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | GSVIVG00028482001 | SubName- Full=Chromosome chr7 scaffold_44, whole genome shotgun sequence; (620 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 600 | |||
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-115 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 7e-91 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-43 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 7e-38 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 6e-23 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-19 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 8e-17 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 7e-14 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 5e-12 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-11 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-11 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 8e-11 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-10 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-08 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-07 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-07 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 2e-07 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-07 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 7e-07 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-06 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 1e-06 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 1e-06 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 3e-06 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 5e-06 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 8e-06 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 1e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 2e-05 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 6e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 7e-05 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 1e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 2e-04 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 3e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 4e-04 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 7e-04 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 0.001 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 0.002 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.002 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.002 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.002 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 0.002 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.003 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 0.004 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 362 bits (931), Expect = e-115
Identities = 198/635 (31%), Positives = 319/635 (50%), Gaps = 88/635 (13%)
Query: 46 NAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEM------ 99
NAMLS F++ G L A +F +MPER++ SW ++ G A AG EA L+ M
Sbjct: 125 NAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVR 184
Query: 100 ------P---------------------------ERNVVSWNSMVVGLIRNGELNEARKV 126
P E +V N+++ ++ G++ AR V
Sbjct: 185 PDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLV 244
Query: 127 FNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEER----NVVTWTSMISG------- 175
F+ MP ++ ISWNAMI+GY E E + LF M E +++T TS+IS
Sbjct: 245 FDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDE 304
Query: 176 ----------------------------YCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGF 207
Y G E +F RM K+ VSWTAMI G+
Sbjct: 305 RLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGY 364
Query: 208 AWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEI 267
NG ++L + M+ + + + + S+++ G L+ L + + I
Sbjct: 365 EKNGLPDKALETYALME---QDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLI 421
Query: 268 SW----TSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEM 323
S+ ++I+ Y + A +FHN+P++D ++WT++I+GL N EA F +M
Sbjct: 422 SYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQM 481
Query: 324 RAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVI 383
+ P + T A + G++IH +++T D L N L+ +Y +CG +
Sbjct: 482 LLT-LKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRM 540
Query: 384 DNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSAC 443
+ A+N F N +D+VSWN ++ G+ HG + +++F M+ESG +P+ VTF+ +L AC
Sbjct: 541 NYAWNQF-NSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCAC 599
Query: 444 SHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRI 503
S +G+V++G E F++M + Y I P +HY +++LLGRAGK+ EA F+ ++P PD +
Sbjct: 600 SRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAV 659
Query: 504 WGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMG 563
WGALL AC + E+ E AA+ + ELDP + +++LCN+YA +G+ E ++R M
Sbjct: 660 WGALLNACRI-HRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMR 718
Query: 564 LKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
G+ PGCSW+ G + FL+ D+ Q+ EI
Sbjct: 719 ENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEI 753
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 294 bits (755), Expect = 7e-91
Identities = 166/554 (29%), Positives = 271/554 (48%), Gaps = 58/554 (10%)
Query: 63 RLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPER-----NVVSWNSMVVGLIRN 117
RL + ++ VS + I L GR EA +LFE + +++++V I
Sbjct: 77 RLDDTQIRKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIAL 136
Query: 118 GELNEARKVFNSMPIKNVI-----SWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSM 172
+ + V+ + + N ++ +V+C M+ +A LF+EM ERN+ +W ++
Sbjct: 137 KSIRCVKAVYWHV-ESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTI 195
Query: 173 ISGYCRAGEVEEGYCLFRRM--------PRKNVVSWTAMIGGFAWNGFHKESLLLFIEMK 224
I G AG E + LFR M PR VV A G + + L +
Sbjct: 196 IGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAG--LGSARAGQQLHCCVLKT 253
Query: 225 GICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSN 284
G+ + SC ++I+ Y + G +E+A+ +FD
Sbjct: 254 GVVGD----TFVSC-ALIDMYSKCGDIEDARCVFD------------------------- 283
Query: 285 AYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGA 344
MP++ VAW +M++G + EA L+ EMR GV TFS++
Sbjct: 284 ------GMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSR 337
Query: 345 TANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSM 404
A ++ +Q H L++T D++ L+ +Y+K G +++A N+F M ++L+SWN++
Sbjct: 338 LALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNAL 397
Query: 405 VMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYK 464
+ G+ +HG + +++FE M+ G PN VTFL +LSAC ++GL +GWE+F +M + ++
Sbjct: 398 IAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHR 457
Query: 465 IQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHA 524
I+P HY MI LLGR G + EA + R PF+P +W ALL AC N E+ A
Sbjct: 458 IKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRI-HKNLELGRLA 516
Query: 525 AKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQM 584
A++L + P +VVL N+Y +SGR E K+ + KG+ P C+W+
Sbjct: 517 AEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHS 576
Query: 585 FLSGDKIPAQVAEI 598
F SGD++ Q EI
Sbjct: 577 FFSGDRLHPQSREI 590
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 166 bits (423), Expect = 1e-43
Identities = 134/506 (26%), Positives = 216/506 (42%), Gaps = 62/506 (12%)
Query: 82 GLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEA--------RKVFNSMPIK 133
L G++ +A KL E M E V V L R E A + +S P
Sbjct: 60 ALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSL 119
Query: 134 NVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMP 193
V NAM++ +V + A +F +M ER++ +W ++ GY +AG +E CL+ RM
Sbjct: 120 GVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRM- 178
Query: 194 RKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEE 253
W G + + F C +++C + + + GR
Sbjct: 179 --------------LWAGV-RPDVYTF-----------PCVLRTCGGIPD--LARGREVH 210
Query: 254 AQNL-FDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNEL 312
A + F D ++ ++I Y+ G V +A +F MP RD ++W AMISG +N
Sbjct: 211 AHVVRFGFELDVDVVN--ALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGE 268
Query: 313 FVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENC 372
+E LF MR V P T + + A + LGR++H ++KT D+ + N
Sbjct: 269 CLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNS 328
Query: 373 LISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPN 432
LI MY G A +FS M ++D VSW +M+ G+ +GL ++ L+ + M + P+
Sbjct: 329 LIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPD 388
Query: 433 SVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYV----SMINLLGRAGKIKEA 488
+T +LSAC+ G + G +L + G YV ++I + + I +A
Sbjct: 389 EITIASVLSACACLGDLDVGVKLHE-----LAERKGLISYVVVANALIEMYSKCKCIDKA 443
Query: 489 EEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAA 548
E +P E D W +++ E + LL L P N+ V L +A
Sbjct: 444 LEVFHNIP-EKDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKP-NS---VTLIAALSA 498
Query: 549 --------SGRHVEEHKLRMDMGLKG 566
G+ + H LR +G G
Sbjct: 499 CARIGALMCGKEIHAHVLRTGIGFDG 524
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 148 bits (376), Expect = 7e-38
Identities = 97/348 (27%), Positives = 168/348 (48%), Gaps = 31/348 (8%)
Query: 45 YNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNV 104
N +L ++ G L +ARRLF+EMPERN+ SW +I GL DAG EA LF EM E
Sbjct: 161 MNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGS 220
Query: 105 VSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEER 164
+ V ++R + +A + CC++ +V
Sbjct: 221 DAEPRTFVVMLR----------------ASAGLGSARAGQQLHCCVLKTGVV-------G 257
Query: 165 NVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMK 224
+ ++I Y + G++E+ C+F MP K V+W +M+ G+A +G+ +E+L L+ EM
Sbjct: 258 DTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEM- 316
Query: 225 GICDNGNNCNVQSCNSMINGYIRFGRLEEAQN----LFDTVPVRDEISWTSMIDGYLSVG 280
D+G + + + + MI + R LE A+ L T D ++ T+++D Y G
Sbjct: 317 --RDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWG 374
Query: 281 QVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFG 340
++ +A +F MP ++ ++W A+I+G + +A +F M A GV P + TF +
Sbjct: 375 RMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLS 434
Query: 341 AAGATANIDLGRQIHCVLMKTESESDLILE-NCLISMYAKCGVIDNAY 387
A + + G +I + + + C+I + + G++D AY
Sbjct: 435 ACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAY 482
|
Length = 697 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 103 bits (257), Expect = 6e-23
Identities = 61/198 (30%), Positives = 107/198 (54%), Gaps = 12/198 (6%)
Query: 18 ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNV---- 73
I YSK G I++A+ +F MP++ V++N+ML+G+ +G EA L+ EM + V
Sbjct: 266 IDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQ 325
Query: 74 VSWTAMICGLADAGRVCEARK----LFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNS 129
+++ MI + + A++ L ++V+ ++V + G + +AR VF+
Sbjct: 326 FTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDR 385
Query: 130 MPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNV----VTWTSMISGYCRAGEVEEG 185
MP KN+ISWNA+IAGY +A+ +FE M V VT+ +++S +G E+G
Sbjct: 386 MPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQG 445
Query: 186 YCLFRRMPRKNVVSWTAM 203
+ +F+ M + + AM
Sbjct: 446 WEIFQSMSENHRIKPRAM 463
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 92.6 bits (230), Expect = 2e-19
Identities = 89/350 (25%), Positives = 150/350 (42%), Gaps = 60/350 (17%)
Query: 16 SSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNV-- 73
S I Y G EA+ +F M ++ VS+ AM+SG+ +NG +A + M + NV
Sbjct: 328 SLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSP 387
Query: 74 --VSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMP 131
++ +++ A G + KL E+ ER GLI
Sbjct: 388 DEITIASVLSACACLGDLDVGVKL-HELAERK---------GLIS--------------- 422
Query: 132 IKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRR 191
V+ NA+I Y +C + +A+ +F + E++V++WTS+I+G E FR+
Sbjct: 423 --YVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQ 480
Query: 192 MP---RKNVVSWTAMIGGFAWNG-------FHKESLLLFIEMKGICDNGNNCNVQSCNSM 241
M + N V+ A + A G H L I G N++
Sbjct: 481 MLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLP----------NAL 530
Query: 242 INGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDR----DA 297
++ Y+R GR+ A N F+ +D +SW ++ GY++ G+ S A LF+ M + D
Sbjct: 531 LDLYVRCGRMNYAWNQFN-SHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDE 589
Query: 298 VAWTAMISGLVQNELFVEATYLF--MEMRAHGVPPLNATFSV--LFGAAG 343
V + +++ ++ + + F ME + P L V L G AG
Sbjct: 590 VTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAG 639
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 84.1 bits (208), Expect = 8e-17
Identities = 74/317 (23%), Positives = 136/317 (42%), Gaps = 56/317 (17%)
Query: 11 VVHLTSSITKYSKRGFIDEAKALFQLMPQRNV---------------------------- 42
V T+ I+ Y K G D+A + LM Q NV
Sbjct: 354 AVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHE 413
Query: 43 -------VSY----NAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCE 91
+SY NA++ + + + +A +F +PE++V+SWT++I GL R E
Sbjct: 414 LAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFE 473
Query: 92 ARKLFEEMP---ERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISW-----NAMIA 143
A F +M + N V+ + + R G L +++ ++ ++ I + NA++
Sbjct: 474 ALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEI-HAHVLRTGIGFDGFLPNALLD 532
Query: 144 GYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNV----VS 199
YV C M A F E++VV+W +++GY G+ LF RM V V+
Sbjct: 533 LYVRCGRMNYAWNQF-NSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVT 591
Query: 200 WTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFD 259
+ +++ + +G + L F M+ N++ +++ R G+L EA N +
Sbjct: 592 FISLLCACSRSGMVTQGLEYFHSMEE--KYSITPNLKHYACVVDLLGRAGKLTEAYNFIN 649
Query: 260 TVPVR-DEISWTSMIDG 275
+P+ D W ++++
Sbjct: 650 KMPITPDPAVWGALLNA 666
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 74.5 bits (183), Expect = 7e-14
Identities = 58/240 (24%), Positives = 103/240 (42%), Gaps = 15/240 (6%)
Query: 301 TAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMK 360
+ + L + +A L M+ VP + LF ++ G ++ +
Sbjct: 55 NSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALS 114
Query: 361 TESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKV 420
+ + L N ++SM+ + G + +A+ +F M RDL SWN +V G++ G +E L +
Sbjct: 115 SHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCL 174
Query: 421 FESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLL- 479
+ ML +G P+ TF +L C ++RG E+ + ++ G E V ++N L
Sbjct: 175 YHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREV-----HAHVVRFGFELDVDVVNALI 229
Query: 480 ---GRAGKIKEAEEFVLRLPFEPDHRIWGALLGAC---GFCEGNAEIAEHAAKRLLELDP 533
+ G + A R+P D W A++ G C E+ R L +DP
Sbjct: 230 TMYVKCGDVVSARLVFDRMPRR-DCISWNAMISGYFENGECLEGLEL--FFTMRELSVDP 286
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 68.4 bits (167), Expect = 5e-12
Identities = 39/142 (27%), Positives = 81/142 (57%), Gaps = 10/142 (7%)
Query: 11 VVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPE 70
+V T+ + YSK G +++A+ +F MP++N++S+NA+++G+ +GR ++A +FE M
Sbjct: 360 IVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIA 419
Query: 71 RNV----VSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSM----VVGLI-RNGELN 121
V V++ A++ +G + ++F+ M E + + +M ++ L+ R G L+
Sbjct: 420 EGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLD 479
Query: 122 EARKVFNSMPIKNVIS-WNAMI 142
EA + P K ++ W A++
Sbjct: 480 EAYAMIRRAPFKPTVNMWAALL 501
|
Length = 697 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 59.3 bits (145), Expect = 1e-11
Identities = 18/50 (36%), Positives = 32/50 (64%), Gaps = 4/50 (8%)
Query: 133 KNVISWNAMIAGYVECCMMGEAIVLFEEMEER----NVVTWTSMISGYCR 178
+V+++N +I GY + + EA+ LF EM++R NV T++ +I G C+
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 59.0 bits (144), Expect = 2e-11
Identities = 18/49 (36%), Positives = 32/49 (65%), Gaps = 4/49 (8%)
Query: 41 NVVSYNAMLSGFLQNGRLSEARRLFEEMPER----NVVSWTAMICGLAD 85
+VV+YN ++ G+ + G++ EA +LF EM +R NV +++ +I GL
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 64.5 bits (157), Expect = 8e-11
Identities = 53/235 (22%), Positives = 97/235 (41%), Gaps = 47/235 (20%)
Query: 41 NVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMP 100
++V+ A++ + + GR+ +AR +F+ MP +N++SW A+I G + GR +A ++FE M
Sbjct: 359 DIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMI 418
Query: 101 ERNV----VSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIV 156
V V++ +++ +G + ++F SM + I AM
Sbjct: 419 AEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAM--------------- 463
Query: 157 LFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVS-WTAMI------GGFAW 209
+ MI R G ++E Y + RR P K V+ W A++
Sbjct: 464 -----------HYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLEL 512
Query: 210 NGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVR 264
E L K + + ++N Y GR EA + +T+ +
Sbjct: 513 GRLAAEKLYGMGPEK----------LNNYVVLLNLYNSSGRQAEAAKVVETLKRK 557
|
Length = 697 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 56.6 bits (138), Expect = 1e-10
Identities = 18/48 (37%), Positives = 30/48 (62%), Gaps = 4/48 (8%)
Query: 165 NVVTWTSMISGYCRAGEVEEGYCLFRRMPRK----NVVSWTAMIGGFA 208
+VVT+ ++I GYC+ G+VEE LF M ++ NV +++ +I G
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 49.7 bits (120), Expect = 3e-08
Identities = 18/47 (38%), Positives = 29/47 (61%), Gaps = 4/47 (8%)
Query: 72 NVVSWTAMICGLADAGRVCEARKLFEEMPER----NVVSWNSMVVGL 114
+VV++ +I G G+V EA KLF EM +R NV +++ ++ GL
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 47.8 bits (115), Expect = 2e-07
Identities = 14/49 (28%), Positives = 26/49 (53%)
Query: 397 DLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSH 445
D+V++N+++ G+ G E LK+F M + G PN T+ ++
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 47.4 bits (114), Expect = 2e-07
Identities = 15/46 (32%), Positives = 22/46 (47%)
Query: 296 DAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGA 341
D V + +I G + EA LF EM+ G+ P T+S+L
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDG 47
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 47.3 bits (114), Expect = 2e-07
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 163 ERNVVTWTSMISGYCRAGEVEEGYCLFRRMP 193
+ +VVT+ ++I G CRAG V+E L M
Sbjct: 4 KPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 47.0 bits (113), Expect = 3e-07
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
Query: 195 KNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGY 245
+VV++ +I G+ G +E+L LF EMK G NV + + +I+G
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMK---KRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 45.4 bits (109), Expect = 7e-07
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 41 NVVSYNAMLSGFLQNGRLSEARRLFEEMP 69
+VV+YN ++ G + GR+ EA L +EM
Sbjct: 6 DVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 45.1 bits (108), Expect = 1e-06
Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
Query: 265 DEISWTSMIDGYLSVGQVSNAYYLFHNMPDR----DAVAWTAMISGL 307
D +++ ++IDGY G+V A LF+ M R + ++ +I GL
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 51.8 bits (124), Expect = 1e-06
Identities = 51/221 (23%), Positives = 103/221 (46%), Gaps = 19/221 (8%)
Query: 271 SMIDGYLSVGQVSNAYYLFHNM------PDRDAVAWTAMISGLVQNELFVEATYLFMEMR 324
++IDG GQV+ A+ + M PDR V + A+IS Q+ A + EM+
Sbjct: 512 ALIDGCARAGQVAKAFGAYGIMRSKNVKPDR--VVFNALISACGQSGAVDRAFDVLAEMK 569
Query: 325 A--HGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGV 382
A H + P + T L A +D ++++ ++ + + + ++ ++ G
Sbjct: 570 AETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGD 629
Query: 383 IDNAYNIFSNM----VSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLG 438
D A +I+ +M V D V ++++V H G ++ ++ + + G +V++
Sbjct: 630 WDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSS 689
Query: 439 ILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLL 479
++ ACS+A + EL+ + + K++P VS +N L
Sbjct: 690 LMGACSNAKNWKKALELYEDIKSI-KLRPT----VSTMNAL 725
|
Length = 1060 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 44.4 bits (106), Expect = 1e-06
Identities = 17/31 (54%), Positives = 23/31 (74%)
Query: 167 VTWTSMISGYCRAGEVEEGYCLFRRMPRKNV 197
VT+ S+ISGYC+AG++EE LF+ M K V
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 49.9 bits (119), Expect = 3e-06
Identities = 41/187 (21%), Positives = 80/187 (42%), Gaps = 37/187 (19%)
Query: 330 PLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNI 389
P +TF++L ++ +ID ++ ++ + ++D L LIS AK G +D + +
Sbjct: 435 PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEV 494
Query: 390 FSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLV 449
F MV+ +G N TF ++ C+ AG V
Sbjct: 495 FHEMVN-------------------------------AGVEANVHTFGALIDGCARAGQV 523
Query: 450 SRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRL-----PFEPDHRIW 504
++ + + M ++P + ++I+ G++G + A + + + P +PDH
Sbjct: 524 AKAFGAYGIMRS-KNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITV 582
Query: 505 GALLGAC 511
GAL+ AC
Sbjct: 583 GALMKAC 589
|
Length = 1060 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 43.2 bits (103), Expect = 5e-06
Identities = 15/31 (48%), Positives = 24/31 (77%)
Query: 43 VSYNAMLSGFLQNGRLSEARRLFEEMPERNV 73
V+YN+++SG+ + G+L EA LF+EM E+ V
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 42.8 bits (102), Expect = 8e-06
Identities = 15/49 (30%), Positives = 29/49 (59%), Gaps = 8/49 (16%)
Query: 234 NVQSCNSMINGYIRFGRLEEAQNLFD------TVPVRDEISWTSMIDGY 276
+V + N++I+GY + G++EEA LF+ P + +++ +IDG
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKP--NVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 42.1 bits (100), Expect = 1e-05
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 167 VTWTSMISGYCRAGEVEEGYCLFRRMPRKNVV 198
VT+ ++I G C+AG VEE LF+ M + +
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIE 32
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 41.7 bits (99), Expect = 2e-05
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 43 VSYNAMLSGFLQNGRLSEARRLFEEMPERNVV 74
V+YN ++ G + GR+ EA LF+EM ER +
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIE 32
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 40.0 bits (95), Expect = 6e-05
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 70 ERNVVSWTAMICGLADAGRVCEARKLFEEMP 100
+ +VV++ +I GL AGRV EA +L +EM
Sbjct: 4 KPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 39.7 bits (94), Expect = 7e-05
Identities = 13/31 (41%), Positives = 22/31 (70%)
Query: 74 VSWTAMICGLADAGRVCEARKLFEEMPERNV 104
V++ ++I G AG++ EA +LF+EM E+ V
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 44.9 bits (106), Expect = 1e-04
Identities = 42/198 (21%), Positives = 89/198 (44%), Gaps = 28/198 (14%)
Query: 23 KRGFIDEAKALFQLMPQRNVVSYNAMLS---------GFLQNGRLSEARRLFEEMPERNV 73
K+ + EA +L+ + ++N ++S G L+ RL + L + +
Sbjct: 418 KQRAVKEAFRFAKLIRNPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGL-----KADC 472
Query: 74 VSWTAMICGLADAGRVCEARKLFEEMP----ERNVVSWNSMVVGLIRNGELNEARKVFNS 129
+T +I A +G+V ++F EM E NV ++ +++ G R G++ +A +
Sbjct: 473 KLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGI 532
Query: 130 MPIKNV----ISWNAMIAGYVECCMMGEAIVLFEEM--EERNV----VTWTSMISGYCRA 179
M KNV + +NA+I+ + + A + EM E + +T +++ A
Sbjct: 533 MRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANA 592
Query: 180 GEVEEGYCLFRRMPRKNV 197
G+V+ +++ + N+
Sbjct: 593 GQVDRAKEVYQMIHEYNI 610
|
Length = 1060 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 38.6 bits (91), Expect = 2e-04
Identities = 12/31 (38%), Positives = 24/31 (77%)
Query: 136 ISWNAMIAGYVECCMMGEAIVLFEEMEERNV 166
+++N++I+GY + + EA+ LF+EM+E+ V
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 37.7 bits (89), Expect = 3e-04
Identities = 10/31 (32%), Positives = 22/31 (70%)
Query: 101 ERNVVSWNSMVVGLIRNGELNEARKVFNSMP 131
+ +VV++N+++ GL R G ++EA ++ + M
Sbjct: 4 KPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 37.8 bits (89), Expect = 4e-04
Identities = 11/32 (34%), Positives = 21/32 (65%)
Query: 136 ISWNAMIAGYVECCMMGEAIVLFEEMEERNVV 167
+++N +I G + + EA+ LF+EM+ER +
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIE 32
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 42.6 bits (100), Expect = 7e-04
Identities = 25/100 (25%), Positives = 52/100 (52%), Gaps = 8/100 (8%)
Query: 418 LKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMIN 477
L+V + E+G + + ++S C+ +G V +E+F+ M ++ + ++I+
Sbjct: 457 LRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEM-VNAGVEANVHTFGALID 515
Query: 478 LLGRAGKIKEAEEF----VLRLP-FEPDHRIWGALLGACG 512
RAG++ +A F ++R +PD ++ AL+ ACG
Sbjct: 516 GCARAGQVAKA--FGAYGIMRSKNVKPDRVVFNALISACG 553
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 36.6 bits (86), Expect = 0.001
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 4/39 (10%)
Query: 18 ITKYSKRGFIDEAKALFQLMPQR----NVVSYNAMLSGF 52
I Y K+G ++EA LF M +R NV +Y+ ++ G
Sbjct: 10 IDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 36.2 bits (85), Expect = 0.002
Identities = 11/44 (25%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
Query: 371 NCLISMYAKCGVIDNAYNIFSNMVSR----DLVSWNSMVMGFSH 410
N LI Y K G ++ A +F+ M R ++ +++ ++ G
Sbjct: 7 NTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 35.9 bits (84), Expect = 0.002
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 399 VSWNSMVMGFSHHGLANETLKVFESMLESG 428
V++NS++ G+ G E L++F+ M E G
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKG 30
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 35.9 bits (84), Expect = 0.002
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 298 VAWTAMISGLVQNELFVEATYLFMEMRAHGV 328
V + ++ISG + EA LF EM+ GV
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 35.5 bits (83), Expect = 0.002
Identities = 11/35 (31%), Positives = 20/35 (57%)
Query: 399 VSWNSMVMGFSHHGLANETLKVFESMLESGTHPNS 433
V++N+++ G G E L++F+ M E G P+
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 35.6 bits (83), Expect = 0.002
Identities = 9/33 (27%), Positives = 15/33 (45%)
Query: 42 VVSYNAMLSGFLQNGRLSEARRLFEEMPERNVV 74
+ +YNA+L + G A + EEM +
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLK 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 35.1 bits (82), Expect = 0.003
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 298 VAWTAMISGLVQNELFVEATYLFMEMRAHGVPP 330
V + +I GL + EA LF EM+ G+ P
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEP 33
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 40.2 bits (94), Expect = 0.004
Identities = 44/197 (22%), Positives = 90/197 (45%), Gaps = 28/197 (14%)
Query: 27 IDEAKALFQLMPQR----NVVSYNAMLSGFLQNGRLSEARRLFEEMP----ERNVVSWTA 78
ID A + +L+ + + Y ++S ++G++ +F EM E NV ++ A
Sbjct: 453 IDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGA 512
Query: 79 MICGLADAGRVCEARKLFEEMPERNV----VSWNSMVVGLIRNGELNEARKVFNSM---- 130
+I G A AG+V +A + M +NV V +N+++ ++G ++ A V M
Sbjct: 513 LIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAET 572
Query: 131 -PIK-NVISWNAMIAGYVECCMMGE---AIVLFEEMEERNV----VTWTSMISGYCRAGE 181
PI + I+ A++ C G+ A +++ + E N+ +T ++ + G+
Sbjct: 573 HPIDPDHITVGALMKA---CANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGD 629
Query: 182 VEEGYCLFRRMPRKNVV 198
+ ++ M +K V
Sbjct: 630 WDFALSIYDDMKKKGVK 646
|
Length = 1060 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 600 | |||
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.97 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.97 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.96 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.95 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.93 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.9 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.89 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.89 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.88 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.86 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.86 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.85 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.85 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.85 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.84 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.84 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.83 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.81 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.8 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.78 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.77 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.71 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.7 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.68 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.67 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.67 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.67 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.66 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.63 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.62 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.57 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.56 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.55 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.55 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.55 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.53 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.53 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.52 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.51 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.51 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.5 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.5 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.5 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.5 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.47 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.47 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.47 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.47 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.44 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.44 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.42 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.42 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.38 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.36 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.34 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.34 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.27 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.26 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.24 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.24 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.24 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.24 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.24 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.23 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.23 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 99.22 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.22 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 99.2 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.19 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.19 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.18 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.17 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.15 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.15 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.14 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.09 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.07 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.07 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.06 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.05 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.03 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.03 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.02 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 99.01 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.96 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.94 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.93 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.91 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.89 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.89 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.85 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.83 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.77 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.75 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.75 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.74 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.71 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.71 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.7 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.66 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.66 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.6 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.6 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.57 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.53 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.52 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.5 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.48 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.47 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.46 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.45 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.44 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.43 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.43 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.4 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.39 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.36 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.35 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.35 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.34 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.3 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.29 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.25 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.23 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.18 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.17 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 98.15 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.13 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.12 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.12 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.1 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.08 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.05 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 98.04 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 98.03 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 98.02 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.01 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 97.99 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.99 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 97.97 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.95 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.93 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.92 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.9 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.9 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.89 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.8 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.77 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.76 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.76 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 97.76 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.75 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.74 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 97.74 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.73 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.69 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.68 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.68 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.67 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.66 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 97.64 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.63 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.61 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.58 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.57 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.56 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.55 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.54 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.54 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.53 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.53 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.52 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.51 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.5 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.5 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 97.5 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.49 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.48 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.46 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.44 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.44 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.41 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.35 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.35 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.34 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.33 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 97.29 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.28 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.25 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.22 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.21 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.21 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.19 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.14 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 97.14 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 97.1 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.08 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.08 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.06 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.97 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 96.93 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.93 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 96.87 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.84 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 96.8 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 96.78 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 96.77 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.76 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 96.75 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.69 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 96.61 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 96.54 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 96.53 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 96.49 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 96.4 | |
| PRK09687 | 280 | putative lyase; Provisional | 96.32 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 96.31 | |
| PRK09687 | 280 | putative lyase; Provisional | 96.28 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.23 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.23 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 96.19 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.14 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 96.09 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 96.02 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 96.0 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 95.99 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 95.98 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 95.92 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 95.87 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 95.76 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 95.65 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 95.59 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 95.58 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 95.55 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 95.52 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 95.5 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 95.46 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 95.41 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 95.35 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 95.31 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 95.3 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 95.3 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 95.25 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 95.24 | |
| PRK13800 | 897 | putative oxidoreductase/HEAT repeat-containing pro | 95.24 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 95.21 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 95.2 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 95.2 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 95.2 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 95.14 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 95.05 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 94.98 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 94.98 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 94.86 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 94.81 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 94.75 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 94.62 | |
| PRK13800 | 897 | putative oxidoreductase/HEAT repeat-containing pro | 94.58 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 94.45 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 94.43 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 94.27 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 94.22 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 94.13 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 93.97 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 93.92 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 93.86 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 93.82 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 93.72 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 93.45 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 93.42 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 93.39 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 93.37 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 93.23 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 93.02 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 92.89 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 92.82 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 92.66 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 91.74 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 91.57 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 91.5 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 91.31 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 91.24 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 91.16 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 91.14 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 91.12 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 90.96 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 90.75 | |
| TIGR02270 | 410 | conserved hypothetical protein. Members are found | 90.53 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 90.42 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 90.41 | |
| TIGR02270 | 410 | conserved hypothetical protein. Members are found | 89.9 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 89.85 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 89.59 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 89.39 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 89.35 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 89.34 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 89.32 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 89.31 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 89.29 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 89.24 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 88.93 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 88.86 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 88.37 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 87.48 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 87.33 | |
| KOG4507 | 886 | consensus Uncharacterized conserved protein, conta | 87.2 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 87.19 | |
| TIGR02508 | 115 | type_III_yscG type III secretion protein, YscG fam | 87.13 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 87.03 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 86.98 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 86.75 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 86.36 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 86.21 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 86.14 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 85.9 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 85.73 | |
| PRK12798 | 421 | chemotaxis protein; Reviewed | 85.55 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 85.15 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 85.14 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 84.72 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 84.06 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 83.86 | |
| TIGR03504 | 44 | FimV_Cterm FimV C-terminal domain. This protein is | 83.28 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 82.51 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 82.04 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 82.02 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 81.83 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 81.82 | |
| KOG1308 | 377 | consensus Hsp70-interacting protein Hip/Transient | 81.73 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 81.53 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 81.49 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 81.26 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 81.17 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 80.83 | |
| PF14561 | 90 | TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S | 80.35 | |
| PF04910 | 360 | Tcf25: Transcriptional repressor TCF25; InterPro: | 80.03 |
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-86 Score=711.99 Aligned_cols=589 Identities=31% Similarity=0.562 Sum_probs=565.9
Q ss_pred CCCCCCccchhHHHHHHHhcCChhhHHHHhccCCCCCcchHHHHHHHHHcCCChhHHHHHhhhcCC----C---------
Q 007519 5 NHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPE----R--------- 71 (600)
Q Consensus 5 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~--------- 71 (600)
.++.+++..++.++..|.+.|+++.|.++|+.|.+||..+|+.++.+|++.|++++|+++|++|.. |
T Consensus 115 ~~~~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll 194 (857)
T PLN03077 115 SHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVL 194 (857)
T ss_pred cCCCCCchHHHHHHHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHH
Confidence 456678888899999999999999999999999999999999999999999999999999998852 4
Q ss_pred --------------------------ChhhHHHHHHHHHhcCChHHHHHHhhcCCCCCceeHHHHHHHHHHCCChhHHHH
Q 007519 72 --------------------------NVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARK 125 (600)
Q Consensus 72 --------------------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 125 (600)
|+.+++.|+.+|++.|++++|.++|++|.+||..+||.++.+|++.|++++|++
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~ 274 (857)
T PLN03077 195 RTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLE 274 (857)
T ss_pred HHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHH
Confidence 445567888889999999999999999999999999999999999999999999
Q ss_pred HhhcCCC----CCcccHHHHHHHHHhcCCHhHHHHHHHhcc----cCCchhHHHHHHHHHhcCChhHHHHHHccCCCCCc
Q 007519 126 VFNSMPI----KNVISWNAMIAGYVECCMMGEAIVLFEEME----ERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNV 197 (600)
Q Consensus 126 ~~~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 197 (600)
+|++|.. ||..+|+.++.+|++.|+++.|.+++..+. .||..+|++|+.+|++.|++++|.++|++|..||.
T Consensus 275 lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~ 354 (857)
T PLN03077 275 LFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDA 354 (857)
T ss_pred HHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCe
Confidence 9999965 999999999999999999999999999987 48999999999999999999999999999999999
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHhcCChhhHHHHhcccC----CCCchhHHHHH
Q 007519 198 VSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVP----VRDEISWTSMI 273 (600)
Q Consensus 198 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~l~ 273 (600)
.+|+.+|.+|.+.|++++|+++|++|.+. |+.||..||+.++.+|++.|+++.|.++++.+. .++..+++.|+
T Consensus 355 ~s~n~li~~~~~~g~~~~A~~lf~~M~~~---g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li 431 (857)
T PLN03077 355 VSWTAMISGYEKNGLPDKALETYALMEQD---NVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALI 431 (857)
T ss_pred eeHHHHHHHHHhCCCHHHHHHHHHHHHHh---CCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHH
Confidence 99999999999999999999999999976 999999999999999999999999999999887 67888999999
Q ss_pred HHHHhcCChHHHHHHHhhCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhcccchhhhHH
Q 007519 274 DGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQ 353 (600)
Q Consensus 274 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~ 353 (600)
++|++.|++++|.++|++|.++|..+|+.+|.+|++.|+.++|+.+|++|.. +++||..||+.++.+|++.|+++.+.+
T Consensus 432 ~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~ 510 (857)
T PLN03077 432 EMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKE 510 (857)
T ss_pred HHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHH
Confidence 9999999999999999999999999999999999999999999999999986 599999999999999999999999999
Q ss_pred HHHHHhhhcCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh
Q 007519 354 IHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNS 433 (600)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 433 (600)
++..+.+.|+.++..++++|+++|+++|++++|.++|+.+ .+|..+||.+|.+|++.|+.++|+++|++|.+.|+.||.
T Consensus 511 i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~ 589 (857)
T PLN03077 511 IHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDE 589 (857)
T ss_pred HHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCc
Confidence 9999999999999999999999999999999999999999 999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHhh
Q 007519 434 VTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGF 513 (600)
Q Consensus 434 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~ 513 (600)
.||+.++.+|++.|++++|.++|+.|.+.+++.|+..+|++++.+|++.|++++|.+++++|+..|+..+|+.++.+|.
T Consensus 590 ~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~- 668 (857)
T PLN03077 590 VTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACR- 668 (857)
T ss_pred ccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHH-
Confidence 9999999999999999999999999997779999999999999999999999999999999999999999999999999
Q ss_pred hhCCHHHHHHHHHHHHhhCCCCCCcHHHHhHHHHhhCCcHHHHHHHHHHhhcCCccCCCcceEEECCeEEEEeeCCCCcc
Q 007519 514 CEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPA 593 (600)
Q Consensus 514 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 593 (600)
..|+.+.++...+++++++|+++..|..|+++|...|+|++|.++++.|+++|++|+||+|||++++.+|.|.+||.+||
T Consensus 669 ~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~ 748 (857)
T PLN03077 669 IHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHP 748 (857)
T ss_pred HcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhccc
Q 007519 594 QVAEIL 599 (600)
Q Consensus 594 ~~~~~~ 599 (600)
+..++|
T Consensus 749 ~~~~i~ 754 (857)
T PLN03077 749 QIKEIN 754 (857)
T ss_pred chHHHH
Confidence 998876
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-72 Score=604.57 Aligned_cols=557 Identities=26% Similarity=0.383 Sum_probs=532.5
Q ss_pred CCCCCccchhHHHHHHHhcCChhhHHHHhccCCC----CCcchHHHHHHHHHcCCChhHHHHHhhhcCC----CChhhHH
Q 007519 6 HPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQ----RNVVSYNAMLSGFLQNGRLSEARRLFEEMPE----RNVVSWT 77 (600)
Q Consensus 6 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~ 77 (600)
..+|+..+++.++..|.+.|++++|..+|+.|.+ |+..+|..++..+...+.++.|..++..+.+ ++...++
T Consensus 46 ~~~~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n 125 (857)
T PLN03077 46 SSSSSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGN 125 (857)
T ss_pred hcccchhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHH
Confidence 4566777899999999999999999999999975 7888999999999999999999999987764 7788999
Q ss_pred HHHHHHHhcCChHHHHHHhhcCCCCCceeHHHHHHHHHHCCChhHHHHHhhcCCC----CCcccHHHHHHHHHhcCCHhH
Q 007519 78 AMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPI----KNVISWNAMIAGYVECCMMGE 153 (600)
Q Consensus 78 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~ 153 (600)
.|+.+|++.|+++.|.++|+.|.+||..+|+.++.+|++.|++++|+++|++|.. ||..||+.++++|+..+++..
T Consensus 126 ~li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~ 205 (857)
T PLN03077 126 AMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLAR 205 (857)
T ss_pred HHHHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhh
Confidence 9999999999999999999999999999999999999999999999999999964 999999999999999999999
Q ss_pred HHHHHHhcc----cCCchhHHHHHHHHHhcCChhHHHHHHccCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhhhcC
Q 007519 154 AIVLFEEME----ERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDN 229 (600)
Q Consensus 154 A~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 229 (600)
+.+++..+. .||..++++|+.+|++.|+++.|.++|++|.++|..+|+.+|.+|.+.|++++|+++|++|.+.
T Consensus 206 ~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~--- 282 (857)
T PLN03077 206 GREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMREL--- 282 (857)
T ss_pred HHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHc---
Confidence 999999887 4899999999999999999999999999999999999999999999999999999999999977
Q ss_pred CCCCChhhHHHHHHHHHhcCChhhHHHHhcccC----CCCchhHHHHHHHHHhcCChHHHHHHHhhCCCCChhhHHHHHH
Q 007519 230 GNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVP----VRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMIS 305 (600)
Q Consensus 230 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~ 305 (600)
|+.||..||+.++.+|++.|+.+.+.+++..+. .+|..+|+.++.+|++.|++++|.++|++|..+|..+||.+|.
T Consensus 283 g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~ 362 (857)
T PLN03077 283 SVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMIS 362 (857)
T ss_pred CCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHH
Confidence 999999999999999999999999999999886 6899999999999999999999999999999999999999999
Q ss_pred HHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhcccchhhhHHHHHHHhhhcCCCchhHHHHHHHHHHhcCChHH
Q 007519 306 GLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDN 385 (600)
Q Consensus 306 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 385 (600)
+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.+.++++.+.+.|+.|+..+++.|+++|++.|++++
T Consensus 363 ~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~ 442 (857)
T PLN03077 363 GYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDK 442 (857)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccCchHHHHHHHHHHHhhcCC
Q 007519 386 AYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKI 465 (600)
Q Consensus 386 A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 465 (600)
|.++|++|..+|..+|+.++.+|++.|+.++|+.+|++|.. +++||..||..++.+|++.|+++.+.+++..+.+. |+
T Consensus 443 A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~-g~ 520 (857)
T PLN03077 443 ALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRT-GI 520 (857)
T ss_pred HHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHh-CC
Confidence 99999999999999999999999999999999999999986 59999999999999999999999999999999986 99
Q ss_pred CCCcchHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHhhhhCCHHHHHHHHHHHHh--hCCCCCCcHHHHh
Q 007519 466 QPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLE--LDPLNAPAHVVLC 543 (600)
Q Consensus 466 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~--~~p~~~~~~~~l~ 543 (600)
.++..++++|+.+|++.|++++|.++|+.+ .||..+|+.++.+|. +.|+.++|+++|+++.+ ..| |..+|..++
T Consensus 521 ~~~~~~~naLi~~y~k~G~~~~A~~~f~~~--~~d~~s~n~lI~~~~-~~G~~~~A~~lf~~M~~~g~~P-d~~T~~~ll 596 (857)
T PLN03077 521 GFDGFLPNALLDLYVRCGRMNYAWNQFNSH--EKDVVSWNILLTGYV-AHGKGSMAVELFNRMVESGVNP-DEVTFISLL 596 (857)
T ss_pred CccceechHHHHHHHHcCCHHHHHHHHHhc--CCChhhHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCC-CcccHHHHH
Confidence 999999999999999999999999999998 789999999999999 99999999999999988 567 889999999
Q ss_pred HHHHhhCCcHHHHHHHHHHh-hcCCccCC
Q 007519 544 NIYAASGRHVEEHKLRMDMG-LKGVRKVP 571 (600)
Q Consensus 544 ~~~~~~g~~~~A~~~~~~~~-~~~~~~~~ 571 (600)
.+|.+.|++++|.++++.|. +.|+.|+.
T Consensus 597 ~a~~~~g~v~ea~~~f~~M~~~~gi~P~~ 625 (857)
T PLN03077 597 CACSRSGMVTQGLEYFHSMEEKYSITPNL 625 (857)
T ss_pred HHHhhcChHHHHHHHHHHHHHHhCCCCch
Confidence 99999999999999999998 67887754
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-72 Score=589.93 Aligned_cols=494 Identities=31% Similarity=0.557 Sum_probs=479.1
Q ss_pred CCceeHHHHHHHHHHCCChhHHHHHhhcCCC-----CCcccHHHHHHHHHhcCCHhHHHHHHHhcc----cCCchhHHHH
Q 007519 102 RNVVSWNSMVVGLIRNGELNEARKVFNSMPI-----KNVISWNAMIAGYVECCMMGEAIVLFEEME----ERNVVTWTSM 172 (600)
Q Consensus 102 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~l 172 (600)
++..+|+.++..+.+.|++++|+++|+.|.. ||..+|+.++.+|.+.++++.+.+++..|. .||..+|+.+
T Consensus 85 ~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~L 164 (697)
T PLN03081 85 KSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRV 164 (697)
T ss_pred CCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHH
Confidence 5677899999999999999999999998863 688999999999999999999999999887 4899999999
Q ss_pred HHHHHhcCChhHHHHHHccCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHhcCChh
Q 007519 173 ISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLE 252 (600)
Q Consensus 173 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 252 (600)
+.+|++.|+++.|.++|++|.+||..+|+.++.+|++.|++++|+++|++|.+. |+.|+..||+.++.+|++.|..+
T Consensus 165 i~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~---g~~p~~~t~~~ll~a~~~~~~~~ 241 (697)
T PLN03081 165 LLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWED---GSDAEPRTFVVMLRASAGLGSAR 241 (697)
T ss_pred HHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHh---CCCCChhhHHHHHHHHhcCCcHH
Confidence 999999999999999999999999999999999999999999999999999976 99999999999999999999999
Q ss_pred hHHHHhcccC----CCCchhHHHHHHHHHhcCChHHHHHHHhhCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCC
Q 007519 253 EAQNLFDTVP----VRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGV 328 (600)
Q Consensus 253 ~a~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 328 (600)
.+.+++..+. .++..+++.|+++|++.|++++|.++|++|..+|+.+||.+|.+|++.|++++|+++|++|.+.|+
T Consensus 242 ~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~ 321 (697)
T PLN03081 242 AGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGV 321 (697)
T ss_pred HHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 9999987765 678999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHhcccchhhhHHHHHHHhhhcCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHH
Q 007519 329 PPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGF 408 (600)
Q Consensus 329 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~ 408 (600)
.||..||+.++.+|++.|+++.|.+++..+.+.|+.|+..+|++|+++|++.|++++|.++|++|..+|..+||.+|.+|
T Consensus 322 ~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y 401 (697)
T PLN03081 322 SIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGY 401 (697)
T ss_pred CCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCCCcchHHHHHHHHhhcCChHHH
Q 007519 409 SHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEA 488 (600)
Q Consensus 409 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 488 (600)
++.|+.++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|.+.+++.|+..+|++++.+|++.|++++|
T Consensus 402 ~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA 481 (697)
T PLN03081 402 GNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEA 481 (697)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHH
Confidence 99999999999999999999999999999999999999999999999999998789999999999999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCCcHHHHhHHHHhhCCcHHHHHHHHHHhhcCCc
Q 007519 489 EEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVR 568 (600)
Q Consensus 489 ~~~~~~~~~~p~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 568 (600)
.+++++++..|+..+|+.++.+|. ..|+.+.|..++++++++.|++..+|..|+.+|.+.|++++|.++++.|+++|++
T Consensus 482 ~~~~~~~~~~p~~~~~~~Ll~a~~-~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~ 560 (697)
T PLN03081 482 YAMIRRAPFKPTVNMWAALLTACR-IHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLS 560 (697)
T ss_pred HHHHHHCCCCCCHHHHHHHHHHHH-HcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCc
Confidence 999999999999999999999999 9999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcceEEECCeEEEEeeCCCCccchhccc
Q 007519 569 KVPGCSWLMRNGGIQMFLSGDKIPAQVAEIL 599 (600)
Q Consensus 569 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 599 (600)
+.||+||+++.+.+|.|.+|+.+||+..++|
T Consensus 561 k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~ 591 (697)
T PLN03081 561 MHPACTWIEVKKQDHSFFSGDRLHPQSREIY 591 (697)
T ss_pred cCCCeeEEEECCeEEEEccCCCCCccHHHHH
Confidence 9999999999999999999999999988775
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-62 Score=514.17 Aligned_cols=495 Identities=17% Similarity=0.215 Sum_probs=438.9
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHhhcCCCCC-----ceeHHHHHHHHHHCCChhHHHHHhhcCCCCCcccHHHHHHHH
Q 007519 71 RNVVSWTAMICGLADAGRVCEARKLFEEMPERN-----VVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGY 145 (600)
Q Consensus 71 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~ 145 (600)
++...|..++..+++.|++++|.++|+.|.+++ ...++.++.+|.+.|.+++|..+|+.|..|+..+|+.++.+|
T Consensus 368 ~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a~ 447 (1060)
T PLN03218 368 RKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVC 447 (1060)
T ss_pred CCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 567788888888899999999999999998744 345567778889999999999999999999999999999999
Q ss_pred HhcCCHhHHHHHHHhcc----cCCchhHHHHHHHHHhcCChhHHHHHHccCC----CCCcchHHHHHHHHHhcCChhHHH
Q 007519 146 VECCMMGEAIVLFEEME----ERNVVTWTSMISGYCRAGEVEEGYCLFRRMP----RKNVVSWTAMIGGFAWNGFHKESL 217 (600)
Q Consensus 146 ~~~~~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~ 217 (600)
++.|+++.|.++|+.|. .||..+|+.+|.+|++.|+++.|.++|++|. .||..+|+.+|.+|++.|++++|.
T Consensus 448 ~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl 527 (1060)
T PLN03218 448 ASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAF 527 (1060)
T ss_pred HhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHH
Confidence 99999999999999987 4889999999999999999999999999997 478899999999999999999999
Q ss_pred HHHHHHHhhhcCCCCCChhhHHHHHHHHHhcCChhhHHHHhcccC------CCCchhHHHHHHHHHhcCChHHHHHHHhh
Q 007519 218 LLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVP------VRDEISWTSMIDGYLSVGQVSNAYYLFHN 291 (600)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 291 (600)
++|++|.+. |+.||..+|+.++.+|++.|++++|.++|++|. .||..+|+.++.+|++.|++++|.++|+.
T Consensus 528 ~lf~~M~~~---Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~ 604 (1060)
T PLN03218 528 GAYGIMRSK---NVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQM 604 (1060)
T ss_pred HHHHHHHHc---CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 999999876 899999999999999999999999999999884 57888999999999999999999999999
Q ss_pred CCC----CChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhcccchhhhHHHHHHHhhhcCCCch
Q 007519 292 MPD----RDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDL 367 (600)
Q Consensus 292 ~~~----~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 367 (600)
|.+ |+..+|+.+|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++++.|.+.|+.|+.
T Consensus 605 M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~ 684 (1060)
T PLN03218 605 IHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGT 684 (1060)
T ss_pred HHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCH
Confidence 876 6778999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhcCC----CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHh
Q 007519 368 ILENCLISMYAKCGVIDNAYNIFSNMV----SRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSAC 443 (600)
Q Consensus 368 ~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 443 (600)
.+|+.++.+|++.|++++|.++|++|. .||..+|+.+|.+|++.|++++|.++|++|...|+.||..||+.++.+|
T Consensus 685 ~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~ 764 (1060)
T PLN03218 685 VSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVAS 764 (1060)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 999999999999999999999999985 7899999999999999999999999999999999999999999999999
Q ss_pred cccCchHHHHHHHHHHHhhcCCCCCcchHHHHHHHHhh----c-------------------CChHHHHHHHHhCC---C
Q 007519 444 SHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGR----A-------------------GKIKEAEEFVLRLP---F 497 (600)
Q Consensus 444 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~-------------------g~~~~A~~~~~~~~---~ 497 (600)
++.|++++|.+++++|.+. |+.||..+|++++.+|.+ + +..++|..+|++|. .
T Consensus 765 ~k~G~le~A~~l~~~M~k~-Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi 843 (1060)
T PLN03218 765 ERKDDADVGLDLLSQAKED-GIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGT 843 (1060)
T ss_pred HHCCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCC
Confidence 9999999999999999886 999999999999876432 1 12367999999985 8
Q ss_pred CCCHHHHHHHHHHHhhhhCCHHHHHHHHHHHHh-hCCCCCCcHHHHhHHHHhhCCcHHHHHHHHHHhhcCCccCCC
Q 007519 498 EPDHRIWGALLGACGFCEGNAEIAEHAAKRLLE-LDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPG 572 (600)
Q Consensus 498 ~p~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~-~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 572 (600)
.||..+|+.++.++. ..++...+..+++.+.. ..+.+..+|..|+..+.+. .++|..++++|...|+.|.-.
T Consensus 844 ~Pd~~T~~~vL~cl~-~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 844 LPTMEVLSQVLGCLQ-LPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred CCCHHHHHHHHHHhc-ccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCcc
Confidence 899999999997666 88888888888876543 2344778999999987332 368999999999999987753
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-61 Score=506.51 Aligned_cols=487 Identities=16% Similarity=0.242 Sum_probs=448.6
Q ss_pred CCcchHHHHHHHHHcCCChhHHHHHhhhcCCC-----ChhhHHHHHHHHHhcCChHHHHHHhhcCCCCCceeHHHHHHHH
Q 007519 40 RNVVSYNAMLSGFLQNGRLSEARRLFEEMPER-----NVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGL 114 (600)
Q Consensus 40 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~ 114 (600)
++...|..++..+++.|++++|+++|++|.++ +..+++.++.+|.+.|.+++|..+|+.|..||..+|+.++.+|
T Consensus 368 ~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a~ 447 (1060)
T PLN03218 368 RKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVC 447 (1060)
T ss_pred CCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 67778999999999999999999999999863 4556788889999999999999999999999999999999999
Q ss_pred HHCCChhHHHHHhhcCCC----CCcccHHHHHHHHHhcCCHhHHHHHHHhcc----cCCchhHHHHHHHHHhcCChhHHH
Q 007519 115 IRNGELNEARKVFNSMPI----KNVISWNAMIAGYVECCMMGEAIVLFEEME----ERNVVTWTSMISGYCRAGEVEEGY 186 (600)
Q Consensus 115 ~~~~~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~ 186 (600)
++.|+++.|.++|++|.+ ||..+|+.++.+|++.|+++.|.++|++|. .||..+|+.+|.+|++.|++++|.
T Consensus 448 ~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl 527 (1060)
T PLN03218 448 ASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAF 527 (1060)
T ss_pred HhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHH
Confidence 999999999999999975 899999999999999999999999999998 489999999999999999999999
Q ss_pred HHHccCC----CCCcchHHHHHHHHHhcCChhHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHhcCChhhHHHHhcccC
Q 007519 187 CLFRRMP----RKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVP 262 (600)
Q Consensus 187 ~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 262 (600)
++|+.|. .||..+|+.+|.+|++.|++++|.++|++|... ..|+.||..+|+.++.+|++.|++++|.++|+.|.
T Consensus 528 ~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~-~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~ 606 (1060)
T PLN03218 528 GAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAE-THPIDPDHITVGALMKACANAGQVDRAKEVYQMIH 606 (1060)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-cCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 9999996 389999999999999999999999999999863 34789999999999999999999999999999997
Q ss_pred ----CCCchhHHHHHHHHHhcCChHHHHHHHhhCCC----CChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhH
Q 007519 263 ----VRDEISWTSMIDGYLSVGQVSNAYYLFHNMPD----RDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNAT 334 (600)
Q Consensus 263 ----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~ 334 (600)
.++..+|+.++.+|++.|++++|..+|++|.. ||..+|+.++.+|++.|++++|.+++++|.+.|+.||..+
T Consensus 607 e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~t 686 (1060)
T PLN03218 607 EYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVS 686 (1060)
T ss_pred HcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHH
Confidence 56778999999999999999999999999975 7999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcccchhhhHHHHHHHhhhcCCCchhHHHHHHHHHHhcCChHHHHHHHhcCC----CCChhhHHHHHHHHHh
Q 007519 335 FSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMV----SRDLVSWNSMVMGFSH 410 (600)
Q Consensus 335 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~ 410 (600)
|+.++.+|++.|+++.|.++|+.|.+.|+.|+..+|+.++.+|++.|++++|.++|++|. .||..+|+.++.+|++
T Consensus 687 ynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k 766 (1060)
T PLN03218 687 YSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASER 766 (1060)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999986 7999999999999999
Q ss_pred cCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcc----c-------------------CchHHHHHHHHHHHhhcCCCC
Q 007519 411 HGLANETLKVFESMLESGTHPNSVTFLGILSACSH----A-------------------GLVSRGWELFNAMFDVYKIQP 467 (600)
Q Consensus 411 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~-------------------g~~~~a~~~~~~~~~~~~~~p 467 (600)
.|++++|.+++.+|.+.|+.||..+|+.++..|.+ . +..+.|..+|++|.+. |+.|
T Consensus 767 ~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~-Gi~P 845 (1060)
T PLN03218 767 KDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISA-GTLP 845 (1060)
T ss_pred CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHC-CCCC
Confidence 99999999999999999999999999999876432 1 1246799999999997 9999
Q ss_pred CcchHHHHHHHHhhcCChHHHHHHHHhCC---CCCCHHHHHHHHHHHhhhhCCHHHHHHHHHHHHhh
Q 007519 468 GPEHYVSMINLLGRAGKIKEAEEFVLRLP---FEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLEL 531 (600)
Q Consensus 468 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~p~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~ 531 (600)
|..+|+.++.++.+.+..+.+..+++.+. ..|+..+|+.++.++. .. .++|..+++.+.+.
T Consensus 846 d~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~-~~--~~~A~~l~~em~~~ 909 (1060)
T PLN03218 846 TMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFG-EY--DPRAFSLLEEAASL 909 (1060)
T ss_pred CHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhc-cC--hHHHHHHHHHHHHc
Confidence 99999999999999999999999999885 5677899999999875 32 46899999999984
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-60 Score=500.99 Aligned_cols=453 Identities=22% Similarity=0.376 Sum_probs=431.4
Q ss_pred CCccchhHHHHHHHhcCChhhHHHHhccCCC-----CCcchHHHHHHHHHcCCChhHHHHHhhhcCC----CChhhHHHH
Q 007519 9 SLVVHLTSSITKYSKRGFIDEAKALFQLMPQ-----RNVVSYNAMLSGFLQNGRLSEARRLFEEMPE----RNVVSWTAM 79 (600)
Q Consensus 9 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~l 79 (600)
.+..+|+.++..|.+.|++++|+++|+.|.. ||..+|+.++.++.+.++++.|.+++..|.+ ||..+|+.|
T Consensus 85 ~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~L 164 (697)
T PLN03081 85 KSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRV 164 (697)
T ss_pred CCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHH
Confidence 3455899999999999999999999999863 7889999999999999999999999999974 899999999
Q ss_pred HHHHHhcCChHHHHHHhhcCCCCCceeHHHHHHHHHHCCChhHHHHHhhcCCC----CCcccHHHHHHHHHhcCCHhHHH
Q 007519 80 ICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPI----KNVISWNAMIAGYVECCMMGEAI 155 (600)
Q Consensus 80 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~A~ 155 (600)
+.+|++.|++++|.++|++|.+||..+|+.++.+|++.|++++|+++|++|.. |+..+|..++.+|+..|+.+.+.
T Consensus 165 i~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~ 244 (697)
T PLN03081 165 LLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQ 244 (697)
T ss_pred HHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHH
Confidence 99999999999999999999999999999999999999999999999999965 89999999999999999999999
Q ss_pred HHHHhcc----cCCchhHHHHHHHHHhcCChhHHHHHHccCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhhhcCCC
Q 007519 156 VLFEEME----ERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGN 231 (600)
Q Consensus 156 ~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~ 231 (600)
+++..+. .+|..+|++|+++|++.|++++|.++|+.|.++|..+|+.+|.+|.+.|++++|+++|++|.+. |+
T Consensus 245 ~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~---g~ 321 (697)
T PLN03081 245 QLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDS---GV 321 (697)
T ss_pred HHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHc---CC
Confidence 9988876 4899999999999999999999999999999999999999999999999999999999999976 99
Q ss_pred CCChhhHHHHHHHHHhcCChhhHHHHhcccC----CCCchhHHHHHHHHHhcCChHHHHHHHhhCCCCChhhHHHHHHHH
Q 007519 232 NCNVQSCNSMINGYIRFGRLEEAQNLFDTVP----VRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGL 307 (600)
Q Consensus 232 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~ 307 (600)
.||..||+.++.+|++.|++++|.+++..+. +++..++++|+++|++.|++++|.++|++|.++|+.+||.+|.+|
T Consensus 322 ~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y 401 (697)
T PLN03081 322 SIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGY 401 (697)
T ss_pred CCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHH
Confidence 9999999999999999999999999999886 778999999999999999999999999999999999999999999
Q ss_pred HhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhcccchhhhHHHHHHHhh-hcCCCchhHHHHHHHHHHhcCChHHH
Q 007519 308 VQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMK-TESESDLILENCLISMYAKCGVIDNA 386 (600)
Q Consensus 308 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A 386 (600)
++.|+.++|+++|++|.+.|+.||..||+.++.+|++.|.++++.++|+.|.+ .|+.|+..+|++++++|++.|++++|
T Consensus 402 ~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA 481 (697)
T PLN03081 402 GNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEA 481 (697)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHH
Confidence 99999999999999999999999999999999999999999999999999976 69999999999999999999999999
Q ss_pred HHHHhcCC-CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHhcccCchHHHHHHHHHHHhhcC
Q 007519 387 YNIFSNMV-SRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPN-SVTFLGILSACSHAGLVSRGWELFNAMFDVYK 464 (600)
Q Consensus 387 ~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 464 (600)
.++++++. .|+..+|+.++.+|...|+.+.|..+++++.+ +.|+ ..+|..++..|++.|++++|.++++.|.+. |
T Consensus 482 ~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~-g 558 (697)
T PLN03081 482 YAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG--MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK-G 558 (697)
T ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--CCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc-C
Confidence 99999997 89999999999999999999999999999975 4564 579999999999999999999999999987 7
Q ss_pred CCC
Q 007519 465 IQP 467 (600)
Q Consensus 465 ~~p 467 (600)
+..
T Consensus 559 ~~k 561 (697)
T PLN03081 559 LSM 561 (697)
T ss_pred Ccc
Confidence 654
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-36 Score=329.62 Aligned_cols=540 Identities=14% Similarity=0.121 Sum_probs=305.7
Q ss_pred cchhHHHHHHHhcCChhhHHHHhccCCC---CCcchHHHHHHHHHcCCChhHHHHHhhhcCC---CChhhHHHHHHHHHh
Q 007519 12 VHLTSSITKYSKRGFIDEAKALFQLMPQ---RNVVSYNAMLSGFLQNGRLSEARRLFEEMPE---RNVVSWTAMICGLAD 85 (600)
Q Consensus 12 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~ 85 (600)
..+..++..+.+.|++++|...++.+.+ .+...+..+...+.+.|++++|.++|+++.+ .+...+..+...+..
T Consensus 330 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 409 (899)
T TIGR02917 330 QARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLS 409 (899)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Confidence 3344444555555555555555554432 2233444455555555555555555555443 123344445555555
Q ss_pred cCChHHHHHHhhcCCC--C-CceeHHHHHHHHHHCCChhHHHHHhhcCCC---CCcccHHHHHHHHHhcCCHhHHHHHHH
Q 007519 86 AGRVCEARKLFEEMPE--R-NVVSWNSMVVGLIRNGELNEARKVFNSMPI---KNVISWNAMIAGYVECCMMGEAIVLFE 159 (600)
Q Consensus 86 ~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~ 159 (600)
.|++++|++.|+.+.+ | +......++..+.+.|++++|.++++++.. .++.++..+...+...|++++|.+.|+
T Consensus 410 ~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 489 (899)
T TIGR02917 410 QGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFE 489 (899)
T ss_pred CCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 5555555555554443 1 222334445555555555555555555543 234455555566666666666666666
Q ss_pred hccc---CCchhHHHHHHHHHhcCChhHHHHHHccCCC---CCcchHHHHHHHHHhcCChhHHHHHHHHHHhhhcCCCCC
Q 007519 160 EMEE---RNVVTWTSMISGYCRAGEVEEGYCLFRRMPR---KNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNC 233 (600)
Q Consensus 160 ~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 233 (600)
++.+ .+...+..++..+...|++++|.+.|+++.+ .+..++..+...+.+.|+.++|...++++... .+.
T Consensus 490 ~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~ 565 (899)
T TIGR02917 490 KALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAEL----NPQ 565 (899)
T ss_pred HHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----Ccc
Confidence 5542 2233444555556666666666666655543 23345555566666666666666666666543 123
Q ss_pred ChhhHHHHHHHHHhcCChhhHHHHhcccC---CCCchhHHHHHHHHHhcCChHHHHHHHhhCCC---CChhhHHHHHHHH
Q 007519 234 NVQSCNSMINGYIRFGRLEEAQNLFDTVP---VRDEISWTSMIDGYLSVGQVSNAYYLFHNMPD---RDAVAWTAMISGL 307 (600)
Q Consensus 234 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~ 307 (600)
+...+..++..+...|++++|..+++.+. +.++..|..++.++...|++++|+..|+.+.+ .+...+..+...+
T Consensus 566 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 645 (899)
T TIGR02917 566 EIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAY 645 (899)
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 34455556666666666666666666554 33455566666666666666666666665533 2344555666666
Q ss_pred HhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhcccchhhhHHHHHHHhhhcCCCchhHHHHHHHHHHhcCChHHHH
Q 007519 308 VQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAY 387 (600)
Q Consensus 308 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 387 (600)
.+.|++++|...|+++.+.. +.+..++..+...+...|+++.|..+++.+.+... .+...+..+...+...|++++|.
T Consensus 646 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~ 723 (899)
T TIGR02917 646 AVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHP-KAALGFELEGDLYLRQKDYPAAI 723 (899)
T ss_pred HHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-CChHHHHHHHHHHHHCCCHHHHH
Confidence 66666666666666665542 33345555566666666666666666666555442 24445555666666666666666
Q ss_pred HHHhcCC--CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccCchHHHHHHHHHHHhhcCC
Q 007519 388 NIFSNMV--SRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKI 465 (600)
Q Consensus 388 ~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 465 (600)
..|+.+. .|+..++..++.++...|++++|.+.++++.+.. +.+...+..+...|...|++++|.+.|+++.+. .
T Consensus 724 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~ 800 (899)
T TIGR02917 724 QAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKK--A 800 (899)
T ss_pred HHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHh--C
Confidence 6666654 3444555556666666666666666666666542 444555556666666666666666666666643 1
Q ss_pred CCCcchHHHHHHHHhhcCChHHHHHHHHhCC-CCCC-HHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCCcHHHHh
Q 007519 466 QPGPEHYVSMINLLGRAGKIKEAEEFVLRLP-FEPD-HRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLC 543 (600)
Q Consensus 466 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 543 (600)
++++.+++.++..+...|+ ++|+++++++. ..|+ ...+..+...+. ..|++++|+..++++++..|.++.++..++
T Consensus 801 p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~ 878 (899)
T TIGR02917 801 PDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLV-EKGEADRALPLLRKAVNIAPEAAAIRYHLA 878 (899)
T ss_pred CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhCCCChHHHHHHH
Confidence 2245566666666666666 66666666643 3332 334444555555 667777777777777777666667777777
Q ss_pred HHHHhhCCcHHHHHHHHHH
Q 007519 544 NIYAASGRHVEEHKLRMDM 562 (600)
Q Consensus 544 ~~~~~~g~~~~A~~~~~~~ 562 (600)
.++.+.|++++|.++++.|
T Consensus 879 ~~~~~~g~~~~A~~~~~~~ 897 (899)
T TIGR02917 879 LALLATGRKAEARKELDKL 897 (899)
T ss_pred HHHHHcCCHHHHHHHHHHH
Confidence 7777777777777766554
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-35 Score=320.73 Aligned_cols=540 Identities=13% Similarity=0.086 Sum_probs=395.3
Q ss_pred HHHHHHHhcCChhhHHHHhccCCC---CCcchHHHHHHHHHcCCChhHHHHHhhhcCC---CChhhHHHHHHHHHhcCCh
Q 007519 16 SSITKYSKRGFIDEAKALFQLMPQ---RNVVSYNAMLSGFLQNGRLSEARRLFEEMPE---RNVVSWTAMICGLADAGRV 89 (600)
Q Consensus 16 ~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~ 89 (600)
.+...+...|++++|...++...+ .+...+..+...+...|++++|...++.+.+ .+...+..++..+.+.|++
T Consensus 300 ~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 379 (899)
T TIGR02917 300 LAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDF 379 (899)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCH
Confidence 334444555555555555555432 2233445555556666666666666665543 2344556666666666666
Q ss_pred HHHHHHhhcCCC---CCceeHHHHHHHHHHCCChhHHHHHhhcCCC---CCcccHHHHHHHHHhcCCHhHHHHHHHhccc
Q 007519 90 CEARKLFEEMPE---RNVVSWNSMVVGLIRNGELNEARKVFNSMPI---KNVISWNAMIAGYVECCMMGEAIVLFEEMEE 163 (600)
Q Consensus 90 ~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 163 (600)
++|.+.|+++.+ .+...+..+...+...|++++|++.++++.. ........++..+.+.|++++|..+++.+.+
T Consensus 380 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 459 (899)
T TIGR02917 380 EKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEK 459 (899)
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 666666666544 2334455566666666666666666666554 1223444556666777777777777776653
Q ss_pred ---CCchhHHHHHHHHHhcCChhHHHHHHccCCC---CCcchHHHHHHHHHhcCChhHHHHHHHHHHhhhcCCCCCChhh
Q 007519 164 ---RNVVTWTSMISGYCRAGEVEEGYCLFRRMPR---KNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQS 237 (600)
Q Consensus 164 ---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 237 (600)
++..++..+...+...|++++|.+.|+++.+ .+...+..+...+...|++++|.+.++.+... .+.+..+
T Consensus 460 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~ 535 (899)
T TIGR02917 460 KQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTI----DPKNLRA 535 (899)
T ss_pred hCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----CcCcHHH
Confidence 3456677777778888888888888877653 24456667777777888888888888888764 2345667
Q ss_pred HHHHHHHHHhcCChhhHHHHhcccC---CCCchhHHHHHHHHHhcCChHHHHHHHhhCCC---CChhhHHHHHHHHHhCC
Q 007519 238 CNSMINGYIRFGRLEEAQNLFDTVP---VRDEISWTSMIDGYLSVGQVSNAYYLFHNMPD---RDAVAWTAMISGLVQNE 311 (600)
Q Consensus 238 ~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g 311 (600)
+..+...+.+.|+.++|..+++++. +.+...+..++..+...|++++|..+++.+.+ .+...|..+...+...|
T Consensus 536 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 615 (899)
T TIGR02917 536 ILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAG 615 (899)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC
Confidence 7777788888888888888887775 44556677788888888888888888887754 45667888888888888
Q ss_pred ChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhcccchhhhHHHHHHHhhhcCCCchhHHHHHHHHHHhcCChHHHHHHHh
Q 007519 312 LFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFS 391 (600)
Q Consensus 312 ~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 391 (600)
++++|+..|+.+.+.. +.+...+..+..++...|+++.|..+++.+.+... .+...+..++..+...|++++|..+++
T Consensus 616 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~ 693 (899)
T TIGR02917 616 DLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELKP-DNTEAQIGLAQLLLAAKRTESAKKIAK 693 (899)
T ss_pred CHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 8888888888887753 34455677777788888888888888888776543 356677888888888889998888888
Q ss_pred cCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCCC
Q 007519 392 NMV---SRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPG 468 (600)
Q Consensus 392 ~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~ 468 (600)
.+. +.+...+..+...+...|++++|...|+++... .|+..++..+..++...|++++|.+.++++.+. .+.+
T Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--~~~~ 769 (899)
T TIGR02917 694 SLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASGNTAEAVKTLEAWLKT--HPND 769 (899)
T ss_pred HHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCC
Confidence 876 446677888888888999999999999998875 455577777888889999999999999988864 2236
Q ss_pred cchHHHHHHHHhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCCcHHHHhHHH
Q 007519 469 PEHYVSMINLLGRAGKIKEAEEFVLRLP--FEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIY 546 (600)
Q Consensus 469 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 546 (600)
...+..++..|...|++++|.+.|+++. .+++...++.+...+. ..|+ ++|+..++++++..|+++..+..++.++
T Consensus 770 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~-~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 847 (899)
T TIGR02917 770 AVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYL-ELKD-PRALEYAEKALKLAPNIPAILDTLGWLL 847 (899)
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-hcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHH
Confidence 7788899999999999999999998875 3446677888888888 8888 8899999999999999999999999999
Q ss_pred HhhCCcHHHHHHHHHHhhcCC
Q 007519 547 AASGRHVEEHKLRMDMGLKGV 567 (600)
Q Consensus 547 ~~~g~~~~A~~~~~~~~~~~~ 567 (600)
...|++++|.++++.+.+.+.
T Consensus 848 ~~~g~~~~A~~~~~~a~~~~~ 868 (899)
T TIGR02917 848 VEKGEADRALPLLRKAVNIAP 868 (899)
T ss_pred HHcCCHHHHHHHHHHHHhhCC
Confidence 999999999998888777654
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.4e-27 Score=258.77 Aligned_cols=546 Identities=12% Similarity=0.079 Sum_probs=384.8
Q ss_pred CCCCccchhHHHHHHHhcCChhhHHHHhccCCC--CCcchH-----------------HHHHHHHHcCCChhHHHHHhhh
Q 007519 7 PKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQ--RNVVSY-----------------NAMLSGFLQNGRLSEARRLFEE 67 (600)
Q Consensus 7 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~-----------------~~l~~~~~~~~~~~~A~~~~~~ 67 (600)
-|.++..+...+..+.+.|+.++|.+.++++.+ |+...+ ..+.+.+...|++++|.+.|++
T Consensus 58 ~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~ 137 (1157)
T PRK11447 58 DPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASYDK 137 (1157)
T ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHH
Confidence 355677777788888888888888888888765 433222 2334467778888888888888
Q ss_pred cCCCChhhHH----HHHHHHHhcCChHHHHHHhhcCCC--C-CceeHHHHHHHHHHCCChhHHHHHhhcCCC-CC-----
Q 007519 68 MPERNVVSWT----AMICGLADAGRVCEARKLFEEMPE--R-NVVSWNSMVVGLIRNGELNEARKVFNSMPI-KN----- 134 (600)
Q Consensus 68 ~~~~~~~~~~----~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~----- 134 (600)
+.+.++.... .+.......|+.++|++.|+++.+ | +...+..+...+...|++++|+..++++.. +.
T Consensus 138 ~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~a 217 (1157)
T PRK11447 138 LFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAA 217 (1157)
T ss_pred HccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHH
Confidence 8752221111 111122235788888888888776 3 445677788888888888888888877632 10
Q ss_pred ------------------------------cccH---------------------HHHHHHHHhcCCHhHHHHHHHhccc
Q 007519 135 ------------------------------VISW---------------------NAMIAGYVECCMMGEAIVLFEEMEE 163 (600)
Q Consensus 135 ------------------------------~~~~---------------------~~l~~~~~~~~~~~~A~~~~~~~~~ 163 (600)
.... ......+...|++++|+..|++..+
T Consensus 218 a~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~ 297 (1157)
T PRK11447 218 AQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVR 297 (1157)
T ss_pred HHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 0000 0112344566778888888877763
Q ss_pred --C-CchhHHHHHHHHHhcCChhHHHHHHccCCC--CCc---chHH------------HHHHHHHhcCChhHHHHHHHHH
Q 007519 164 --R-NVVTWTSMISGYCRAGEVEEGYCLFRRMPR--KNV---VSWT------------AMIGGFAWNGFHKESLLLFIEM 223 (600)
Q Consensus 164 --~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~---~~~~------------~li~~~~~~~~~~~a~~~~~~~ 223 (600)
| +..++..+..++.+.|++++|+..|++..+ |+. ..|. .....+.+.|++++|+..|+++
T Consensus 298 ~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~A 377 (1157)
T PRK11447 298 ANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQA 377 (1157)
T ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3 456677777788888888888888877654 221 1111 1234566778888888888888
Q ss_pred HhhhcCCCCCChhhHHHHHHHHHhcCChhhHHHHhcccC---CCCchhHHHHHHHHHhcCChHHHHHHHhhCCCCC----
Q 007519 224 KGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVP---VRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRD---- 296 (600)
Q Consensus 224 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---- 296 (600)
.+. .+.+...+..+...+...|++++|++.|+++. +.+...+..+...|. .++.++|+.+++.+....
T Consensus 378 l~~----~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~ 452 (1157)
T PRK11447 378 RQV----DNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSI 452 (1157)
T ss_pred HHh----CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHH
Confidence 764 12345566667777888888888888887776 334445556666654 456788887777665321
Q ss_pred --------hhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC-hhHHHHHHHHHhcccchhhhHHHHHHHhhhcCCCch
Q 007519 297 --------AVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPL-NATFSVLFGAAGATANIDLGRQIHCVLMKTESESDL 367 (600)
Q Consensus 297 --------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 367 (600)
...+..+...+...|++++|+..|++..+. .|+ ...+..+...+.+.|+.++|...++.+.+.... +.
T Consensus 453 ~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~--~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~-~~ 529 (1157)
T PRK11447 453 DDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL--DPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPN-DP 529 (1157)
T ss_pred HHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CH
Confidence 123445666788899999999999999886 454 456677788899999999999999988765433 34
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhcCCCC----Ch---------hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChh
Q 007519 368 ILENCLISMYAKCGVIDNAYNIFSNMVSR----DL---------VSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSV 434 (600)
Q Consensus 368 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~---------~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~ 434 (600)
..+..+...+...++.++|...++.+... +. ..+..+...+...|+.++|..+++. .+++..
T Consensus 530 ~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~ 604 (1157)
T PRK11447 530 EQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTR 604 (1157)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCch
Confidence 44445556677889999999999988632 11 1122345678889999999999872 355566
Q ss_pred HHHHHHHHhcccCchHHHHHHHHHHHhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhCC-CCCC-HHHHHHHHHHH
Q 007519 435 TFLGILSACSHAGLVSRGWELFNAMFDVYKIQP-GPEHYVSMINLLGRAGKIKEAEEFVLRLP-FEPD-HRIWGALLGAC 511 (600)
Q Consensus 435 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~ 511 (600)
.+..+...+.+.|++++|.+.|+++.+. .| +...+..++.+|...|++++|++.++.+. ..|+ ...+..+..++
T Consensus 605 ~~~~La~~~~~~g~~~~A~~~y~~al~~---~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~ 681 (1157)
T PRK11447 605 IDLTLADWAQQRGDYAAARAAYQRVLTR---EPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAW 681 (1157)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHH
Confidence 6777888999999999999999999864 56 58889999999999999999999999876 4554 44555666677
Q ss_pred hhhhCCHHHHHHHHHHHHhhCCCCCC------cHHHHhHHHHhhCCcHHHHH-HHHHHhhcCCcc
Q 007519 512 GFCEGNAEIAEHAAKRLLELDPLNAP------AHVVLCNIYAASGRHVEEHK-LRMDMGLKGVRK 569 (600)
Q Consensus 512 ~~~~g~~~~a~~~~~~~~~~~p~~~~------~~~~l~~~~~~~g~~~~A~~-~~~~~~~~~~~~ 569 (600)
. ..|++++|+..++++++..|+++. .+..++.++...|++++|.. +.+.|...|+.+
T Consensus 682 ~-~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~~~~ 745 (1157)
T PRK11447 682 A-ALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVASGITP 745 (1157)
T ss_pred H-hCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC
Confidence 7 899999999999999998775543 56667899999999999999 555555565643
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.9e-26 Score=251.94 Aligned_cols=539 Identities=11% Similarity=0.059 Sum_probs=323.6
Q ss_pred hhHHHHHHHhcCChhhHHHHhccCCC---CCcchHHHHHHHHHcCCChhHHHHHhhhcCC--CChhh-------------
Q 007519 14 LTSSITKYSKRGFIDEAKALFQLMPQ---RNVVSYNAMLSGFLQNGRLSEARRLFEEMPE--RNVVS------------- 75 (600)
Q Consensus 14 ~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~------------- 75 (600)
+-..+..+...++.+.|.+.++++.. .++.++..++..+...|+.++|.+.+++..+ |+...
T Consensus 31 Ll~q~~~~~~~~~~d~a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~ 110 (1157)
T PRK11447 31 LLEQVRLGEATHREDLVRQSLYRLELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTP 110 (1157)
T ss_pred HHHHHHHHHhhCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCC
Confidence 55667778889999999999999875 4577888899999999999999999999986 43322
Q ss_pred ----HHHHHHHHHhcCChHHHHHHhhcCCCCCceeHH----HHHHHHHHCCChhHHHHHhhcCCC--C-CcccHHHHHHH
Q 007519 76 ----WTAMICGLADAGRVCEARKLFEEMPERNVVSWN----SMVVGLIRNGELNEARKVFNSMPI--K-NVISWNAMIAG 144 (600)
Q Consensus 76 ----~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~ 144 (600)
...+...+.+.|++++|++.|+.+.+.++.... .........|+.++|++.|+++.+ | +...+..+...
T Consensus 111 ~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~l 190 (1157)
T PRK11447 111 EGRQALQQARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLALL 190 (1157)
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 233445788999999999999998873222211 111222245999999999999987 3 45577788899
Q ss_pred HHhcCCHhHHHHHHHhcccCCch------h-----------------HH-------------------------------
Q 007519 145 YVECCMMGEAIVLFEEMEERNVV------T-----------------WT------------------------------- 170 (600)
Q Consensus 145 ~~~~~~~~~A~~~~~~~~~~~~~------~-----------------~~------------------------------- 170 (600)
+...|+.++|.+.++++.+.... . +.
T Consensus 191 l~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~ 270 (1157)
T PRK11447 191 LFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAF 270 (1157)
T ss_pred HHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcch
Confidence 99999999999999987531100 0 00
Q ss_pred ---HHHHHHHhcCChhHHHHHHccCCC--C-CcchHHHHHHHHHhcCChhHHHHHHHHHHhhhcCCCCCCh---hhH---
Q 007519 171 ---SMISGYCRAGEVEEGYCLFRRMPR--K-NVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNV---QSC--- 238 (600)
Q Consensus 171 ---~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~~--- 238 (600)
.....+...|++++|+..|++..+ | +..++..+...+.+.|++++|+..|++..+. .|+. ..+
T Consensus 271 ~~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~-----~p~~~~~~~~~~l 345 (1157)
T PRK11447 271 RARAQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALAL-----DPHSSNRDKWESL 345 (1157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCccchhHHHHH
Confidence 001223334444444444444332 1 2334444444444444444444444444432 1110 000
Q ss_pred ---------HHHHHHHHhcCChhhHHHHhcccC---CCCchhHHHHHHHHHhcCChHHHHHHHhhCCC---CChhhHHHH
Q 007519 239 ---------NSMINGYIRFGRLEEAQNLFDTVP---VRDEISWTSMIDGYLSVGQVSNAYYLFHNMPD---RDAVAWTAM 303 (600)
Q Consensus 239 ---------~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l 303 (600)
......+.+.|++++|+..|+++. +.+...+..+...+...|++++|++.|+++.. .+...+..+
T Consensus 346 l~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L 425 (1157)
T PRK11447 346 LKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGL 425 (1157)
T ss_pred HHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 011223334444444444444443 22333334444444444444444444444332 122233333
Q ss_pred HHHHHhCCChhHHHHHHHHHHHCCCC--------CChhHHHHHHHHHhcccchhhhHHHHHHHhhhcCCCchhHHHHHHH
Q 007519 304 ISGLVQNELFVEATYLFMEMRAHGVP--------PLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLIS 375 (600)
Q Consensus 304 i~~~~~~g~~~~a~~~~~~m~~~g~~--------p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 375 (600)
...|. .++.++|+.+++.+...... .....+..+...+...|+.++|...++.+.+.... +..++..+..
T Consensus 426 ~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~ 503 (1157)
T PRK11447 426 ANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQ 503 (1157)
T ss_pred HHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 33332 23344444444332211000 00011222333444556666666666665554332 3444555666
Q ss_pred HHHhcCChHHHHHHHhcCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChh---------HHHHHHHHh
Q 007519 376 MYAKCGVIDNAYNIFSNMV---SRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSV---------TFLGILSAC 443 (600)
Q Consensus 376 ~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~---------~~~~l~~~~ 443 (600)
.|.+.|++++|...++++. +.+...+..+...+...++.++|+..++.+......++.. .+......+
T Consensus 504 ~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l 583 (1157)
T PRK11447 504 DLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRL 583 (1157)
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHH
Confidence 6666666666666666553 2234444444444555666666666665543221111111 112334556
Q ss_pred cccCchHHHHHHHHHHHhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHhhhhCCHHHH
Q 007519 444 SHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLP-FEP-DHRIWGALLGACGFCEGNAEIA 521 (600)
Q Consensus 444 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~g~~~~a 521 (600)
...|+.++|.++++. ..+++..+..++..+.+.|++++|++.+++.. ..| +...+..+...+. ..|+.++|
T Consensus 584 ~~~G~~~eA~~~l~~------~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~-~~g~~~eA 656 (1157)
T PRK11447 584 RDSGKEAEAEALLRQ------QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDI-AQGDLAAA 656 (1157)
T ss_pred HHCCCHHHHHHHHHh------CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HCCCHHHH
Confidence 677778888777661 12356677889999999999999999998875 455 4667788888888 89999999
Q ss_pred HHHHHHHHhhCCCCCCcHHHHhHHHHhhCCcHHHHHHHHHHhhcC
Q 007519 522 EHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKG 566 (600)
Q Consensus 522 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 566 (600)
+..++++.+..|+++.++..++.++...|++++|.++++.+....
T Consensus 657 ~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 701 (1157)
T PRK11447 657 RAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQA 701 (1157)
T ss_pred HHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhC
Confidence 999999999999889999999999999999999999888776543
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-23 Score=221.37 Aligned_cols=529 Identities=11% Similarity=0.027 Sum_probs=369.0
Q ss_pred HHHhcCChhhHHHHhccCCC--C-CcchHHHHHHHHHcCCChhHHHHHhhhcCC--CChhhHHHHHHHHHhcCChHHHHH
Q 007519 20 KYSKRGFIDEAKALFQLMPQ--R-NVVSYNAMLSGFLQNGRLSEARRLFEEMPE--RNVVSWTAMICGLADAGRVCEARK 94 (600)
Q Consensus 20 ~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~ 94 (600)
.+...|++++|+..|+...+ | +..++..|...|...|++++|+..+++..+ |+-..|..++..+ +++++|..
T Consensus 53 ~~~~~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i---~~~~kA~~ 129 (987)
T PRK09782 53 KAQKNNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAI---PVEVKSVT 129 (987)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh---ccChhHHH
Confidence 33455999999999999875 3 466788899999999999999999999986 4333333333222 88999999
Q ss_pred HhhcCCC--C-CceeHHHHHHH--------HHHCCChhHHHHHhhcCCCCC--cccHHHH-HHHHHhcCCHhHHHHHHHh
Q 007519 95 LFEEMPE--R-NVVSWNSMVVG--------LIRNGELNEARKVFNSMPIKN--VISWNAM-IAGYVECCMMGEAIVLFEE 160 (600)
Q Consensus 95 ~~~~~~~--~-~~~~~~~l~~~--------~~~~~~~~~a~~~~~~~~~~~--~~~~~~l-~~~~~~~~~~~~A~~~~~~ 160 (600)
+++++.+ | +...+..+... |.+.++..++++ .+...|+ +.+.... .++|...|++++|++++.+
T Consensus 130 ~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~ 207 (987)
T PRK09782 130 TVEELLAQQKACDAVPTLRCRSEVGQNALRLAQLPVARAQLN--DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNE 207 (987)
T ss_pred HHHHHHHhCCCChhHHHHHHHHhhccchhhhhhHHHHHHHHH--HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 9999876 4 45556666665 667766666666 3333343 4434444 8899999999999999999
Q ss_pred cccC---CchhHHHHHHHHHh-cCChhHHHHHHccCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhhhcCCCCCChh
Q 007519 161 MEER---NVVTWTSMISGYCR-AGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQ 236 (600)
Q Consensus 161 ~~~~---~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 236 (600)
+.+. +......|..+|.. .++ +.+..+++...+.+...+..++..+.+.|+.++|..+++++.... .. .|+..
T Consensus 208 L~k~~pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~-~~-~~~~~ 284 (987)
T PRK09782 208 ARQQNTLSAAERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENKPLF-TT-DAQEK 284 (987)
T ss_pred HHhcCCCCHHHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccc-cC-CCccH
Confidence 8853 33345567777877 466 888888776555688889999999999999999999999886541 11 11111
Q ss_pred hH------------------------------HHHHHHHHhcCChhhHHHHhcccC------------------------
Q 007519 237 SC------------------------------NSMINGYIRFGRLEEAQNLFDTVP------------------------ 262 (600)
Q Consensus 237 ~~------------------------------~~l~~~~~~~~~~~~a~~~~~~~~------------------------ 262 (600)
++ ..++..+.+.++++.++++...-.
T Consensus 285 ~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~ 364 (987)
T PRK09782 285 SWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRL 364 (987)
T ss_pred HHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHH
Confidence 11 112455566677776666643211
Q ss_pred --------CCCchhHHHHHHHHHhcCChHHHHHHHhhCCC--C----ChhhHHHHHHHHHhCCC---hhHHHHH------
Q 007519 263 --------VRDEISWTSMIDGYLSVGQVSNAYYLFHNMPD--R----DAVAWTAMISGLVQNEL---FVEATYL------ 319 (600)
Q Consensus 263 --------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~----~~~~~~~li~~~~~~g~---~~~a~~~------ 319 (600)
+.+....-.+.-...+.|+.++|.++|+.... + +....+.++..|.+.+. ..+++.+
T Consensus 365 ~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~ 444 (987)
T PRK09782 365 ARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPL 444 (987)
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhcccccc
Confidence 11222222333345667889999998887755 1 22234466777776655 3333322
Q ss_pred ----------------HHHHHHC-CCCC---ChhHHHHHHHHHhcccchhhhHHHHHHHhhhcCCCchhHHHHHHHHHHh
Q 007519 320 ----------------FMEMRAH-GVPP---LNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAK 379 (600)
Q Consensus 320 ----------------~~~m~~~-g~~p---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 379 (600)
++..... +..| +...+..+..++.. ++.++|...+....... |+......+...+..
T Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~ 521 (987)
T PRK09782 445 AEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQ 521 (987)
T ss_pred chhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHH
Confidence 1111111 1123 34455555555554 78888888777666554 343333344555568
Q ss_pred cCChHHHHHHHhcCC--CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccCchHHHHHHHH
Q 007519 380 CGVIDNAYNIFSNMV--SRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFN 457 (600)
Q Consensus 380 ~~~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 457 (600)
.|++++|...|+++. +|+...+..+..++.+.|+.++|...+++..+.. +++...+..+...+...|++++|...++
T Consensus 522 ~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~ 600 (987)
T PRK09782 522 VEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLT 600 (987)
T ss_pred CCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 999999999998775 3455566777788889999999999999998753 2233333334444556699999999999
Q ss_pred HHHhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhCC-CCCCH-HHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCC
Q 007519 458 AMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLP-FEPDH-RIWGALLGACGFCEGNAEIAEHAAKRLLELDPLN 535 (600)
Q Consensus 458 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~-~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~ 535 (600)
++.+. .|+...+..++.++.+.|++++|...+++.. ..|+. ..+..+...+. ..|+.++|+..++++++..|++
T Consensus 601 ~AL~l---~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~-~~G~~eeAi~~l~~AL~l~P~~ 676 (987)
T PRK09782 601 RSLNI---APSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALW-DSGDIAQSREMLERAHKGLPDD 676 (987)
T ss_pred HHHHh---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCC
Confidence 99854 6778889999999999999999999998875 66654 45566666777 8999999999999999999999
Q ss_pred CCcHHHHhHHHHhhCCcHHHHHHHHHHhh
Q 007519 536 APAHVVLCNIYAASGRHVEEHKLRMDMGL 564 (600)
Q Consensus 536 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 564 (600)
+.++..++.++...|++++|...++...+
T Consensus 677 ~~a~~nLA~al~~lGd~~eA~~~l~~Al~ 705 (987)
T PRK09782 677 PALIRQLAYVNQRLDDMAATQHYARLVID 705 (987)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 99999999999999999999997766543
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.7e-22 Score=212.99 Aligned_cols=535 Identities=11% Similarity=-0.000 Sum_probs=389.8
Q ss_pred CCCccchhHHHHHHHhcCChhhHHHHhccCCC--CCcchHHHHHHHHHcCCChhHHHHHhhhcCC--C-ChhhHHHHHHH
Q 007519 8 KSLVVHLTSSITKYSKRGFIDEAKALFQLMPQ--RNVVSYNAMLSGFLQNGRLSEARRLFEEMPE--R-NVVSWTAMICG 82 (600)
Q Consensus 8 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~ 82 (600)
|.++.++..++..|...|++++|+..+++..+ |+-..|..++..+ +++++|..+++++.+ | +..++..+...
T Consensus 75 P~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i---~~~~kA~~~ye~l~~~~P~n~~~~~~la~~ 151 (987)
T PRK09782 75 PDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAI---PVEVKSVTTVEELLAQQKACDAVPTLRCRS 151 (987)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh---ccChhHHHHHHHHHHhCCCChhHHHHHHHH
Confidence 44577889999999999999999999999986 5444444444333 899999999999986 3 35566666666
Q ss_pred --------HHhcCChHHHHHHhhcCCCCC--ceeHH-HHHHHHHHCCChhHHHHHhhcCCC--C-CcccHHHHHHHHHh-
Q 007519 83 --------LADAGRVCEARKLFEEMPERN--VVSWN-SMVVGLIRNGELNEARKVFNSMPI--K-NVISWNAMIAGYVE- 147 (600)
Q Consensus 83 --------~~~~g~~~~A~~~~~~~~~~~--~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~- 147 (600)
|.+.+...++++ .+...|+ +.... .+.+.|.+.|++++|+.+++++.+ | +..-...+..+|..
T Consensus 152 ~~~~~~l~y~q~eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~pl~~~~~~~L~~ay~q~ 229 (987)
T PRK09782 152 EVGQNALRLAQLPVARAQLN--DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNTLSAAERRQWFDVLLAG 229 (987)
T ss_pred hhccchhhhhhHHHHHHHHH--HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Confidence 777766666666 3333354 33334 448999999999999999999987 3 33345566677777
Q ss_pred cCCHhHHHHHHHhcccCCchhHHHHHHHHHhcCChhHHHHHHccCCC-----CCcch-----------------------
Q 007519 148 CCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPR-----KNVVS----------------------- 199 (600)
Q Consensus 148 ~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~----------------------- 199 (600)
.++ +.+..+++...+.++..+..++..|.+.|+.++|.++++++.. |+..+
T Consensus 230 l~~-~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~ 308 (987)
T PRK09782 230 QLD-DRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQF 308 (987)
T ss_pred hCH-HHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhh
Confidence 477 8888887765567888899999999999999999999988763 11111
Q ss_pred -------HHHHHHHHHhcCChhHHHHHHH-----------------------------HHHhhhcCCCCCChhhHHHHHH
Q 007519 200 -------WTAMIGGFAWNGFHKESLLLFI-----------------------------EMKGICDNGNNCNVQSCNSMIN 243 (600)
Q Consensus 200 -------~~~li~~~~~~~~~~~a~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~l~~ 243 (600)
...++..+.+.++++.+.++.. .|.+. .+-+......+.-
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~----~~~~~~~l~q~~~ 384 (987)
T PRK09782 309 ADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQ----EPANLTRLDQLTW 384 (987)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhc----CCCCHHHHHHHHH
Confidence 1222445556666665554421 11110 0113333333444
Q ss_pred HHHhcCChhhHHHHhcccCCC------CchhHHHHHHHHHhcCC---hHHHHHH-------------------------H
Q 007519 244 GYIRFGRLEEAQNLFDTVPVR------DEISWTSMIDGYLSVGQ---VSNAYYL-------------------------F 289 (600)
Q Consensus 244 ~~~~~~~~~~a~~~~~~~~~~------~~~~~~~l~~~~~~~~~---~~~A~~~-------------------------~ 289 (600)
...+.|+.++|..+++...+. +.....-++..|.+.+. ..++..+ +
T Consensus 385 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (987)
T PRK09782 385 QLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAI 464 (987)
T ss_pred HHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHH
Confidence 456788999999999888741 12234466677766655 3333222 1
Q ss_pred hhCCC---C--ChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhcccchhhhHHHHHHHhhhcCC
Q 007519 290 HNMPD---R--DAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESE 364 (600)
Q Consensus 290 ~~~~~---~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 364 (600)
..... + +...|..+..++.. ++.++|+..+.+.... .|+......+...+...|+.+.|...++.+... +
T Consensus 465 ~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~ 539 (987)
T PRK09782 465 VRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--D 539 (987)
T ss_pred HHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--C
Confidence 11111 2 45677777777776 8899999988888775 577655444455667899999999999987554 3
Q ss_pred CchhHHHHHHHHHHhcCChHHHHHHHhcCCCCCh---hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHH
Q 007519 365 SDLILENCLISMYAKCGVIDNAYNIFSNMVSRDL---VSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILS 441 (600)
Q Consensus 365 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~ 441 (600)
|+...+..+..++.+.|++++|...++.....++ ..+..+.......|++++|...+++..+. .|+...+..+..
T Consensus 540 p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~ 617 (987)
T PRK09782 540 MSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARAT 617 (987)
T ss_pred CCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHH
Confidence 3334456677888999999999999998874332 23333334445569999999999999874 677888888899
Q ss_pred HhcccCchHHHHHHHHHHHhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhCC-CCCC-HHHHHHHHHHHhhhhCCH
Q 007519 442 ACSHAGLVSRGWELFNAMFDVYKIQP-GPEHYVSMINLLGRAGKIKEAEEFVLRLP-FEPD-HRIWGALLGACGFCEGNA 518 (600)
Q Consensus 442 ~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~~g~~ 518 (600)
++.+.|++++|...++++... .| +...++.++.++...|++++|++.+++.. ..|+ ...+..+..++. ..|++
T Consensus 618 ~l~~lG~~deA~~~l~~AL~l---~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~-~lGd~ 693 (987)
T PRK09782 618 IYRQRHNVPAAVSDLRAALEL---EPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQ-RLDDM 693 (987)
T ss_pred HHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HCCCH
Confidence 999999999999999999864 67 57888999999999999999999999864 5564 566777777888 99999
Q ss_pred HHHHHHHHHHHhhCCCCCCcHHHHhHHHHhhCCcHHHHHHHHHHh
Q 007519 519 EIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMG 563 (600)
Q Consensus 519 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 563 (600)
++|+..+++++++.|++..+....++...+..+++.|.+-++...
T Consensus 694 ~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~ 738 (987)
T PRK09782 694 AATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRW 738 (987)
T ss_pred HHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999554443
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1e-22 Score=190.54 Aligned_cols=432 Identities=15% Similarity=0.142 Sum_probs=329.9
Q ss_pred HHHHHHHHHHCCChhHHHHHhhcCCC--C-CcccHHHHHHHHHhcCCHhHHHHHHHhccc---CCchhHHHHHHHHHhcC
Q 007519 107 WNSMVVGLIRNGELNEARKVFNSMPI--K-NVISWNAMIAGYVECCMMGEAIVLFEEMEE---RNVVTWTSMISGYCRAG 180 (600)
Q Consensus 107 ~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g 180 (600)
...|..-..+.|++.+|++.-+..-. | +......+-..+.+..+.+.....-....+ .-..+|..+...+...|
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~kerg 130 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKERG 130 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHhc
Confidence 45566666677888887775554433 1 222222333445555555554443333332 22457777888888888
Q ss_pred ChhHHHHHHccCCC---CCcchHHHHHHHHHhcCChhHHHHHHHHHHhhhcCCCCCChhhHHH-HHHHHHhcCChhhHHH
Q 007519 181 EVEEGYCLFRRMPR---KNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNS-MINGYIRFGRLEEAQN 256 (600)
Q Consensus 181 ~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~a~~ 256 (600)
++++|+..++.+.+ ..+..|..+..++...|+.+.|.+.|.+.++. .|+.....+ +...+...|++++|..
T Consensus 131 ~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alql-----nP~l~ca~s~lgnLlka~Grl~ea~~ 205 (966)
T KOG4626|consen 131 QLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQL-----NPDLYCARSDLGNLLKAEGRLEEAKA 205 (966)
T ss_pred hHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc-----CcchhhhhcchhHHHHhhcccchhHH
Confidence 88888888887765 24457888888888888888888888888754 666544333 4444556788888877
Q ss_pred HhcccC---CCCchhHHHHHHHHHhcCChHHHHHHHhhCCCCC---hhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC
Q 007519 257 LFDTVP---VRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRD---AVAWTAMISGLVQNELFVEATYLFMEMRAHGVPP 330 (600)
Q Consensus 257 ~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 330 (600)
-|.+.. +.-...|+.|.-.+...|++..|+..|++..+-| ..+|-.|...|-..+.+++|+..|.+.... .|
T Consensus 206 cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l--rp 283 (966)
T KOG4626|consen 206 CYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL--RP 283 (966)
T ss_pred HHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc--CC
Confidence 776665 2234568888888888888888888888876633 357788888888888999999888887765 45
Q ss_pred C-hhHHHHHHHHHhcccchhhhHHHHHHHhhhcCCCchhHHHHHHHHHHhcCChHHHHHHHhcCC---CCChhhHHHHHH
Q 007519 331 L-NATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMV---SRDLVSWNSMVM 406 (600)
Q Consensus 331 ~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~ 406 (600)
+ ...+..+...|...|.++.|...+++..+.... =...|+.|..++...|++.+|.+.|.+.. +....+.+.|..
T Consensus 284 n~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgn 362 (966)
T KOG4626|consen 284 NHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGN 362 (966)
T ss_pred cchhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHH
Confidence 4 456666777788889999999999888775433 25678999999999999999999999886 445678889999
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCh-hHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCCC-cchHHHHHHHHhhcCC
Q 007519 407 GFSHHGLANETLKVFESMLESGTHPNS-VTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPG-PEHYVSMINLLGRAGK 484 (600)
Q Consensus 407 ~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~ 484 (600)
.+...|.+++|..+|....+ +.|.- ..++.|...|-+.|++++|+..++++. .+.|+ ...|+.++..|...|+
T Consensus 363 i~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal---rI~P~fAda~~NmGnt~ke~g~ 437 (966)
T KOG4626|consen 363 IYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL---RIKPTFADALSNMGNTYKEMGD 437 (966)
T ss_pred HHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH---hcCchHHHHHHhcchHHHHhhh
Confidence 99999999999999999886 56664 678889999999999999999999998 57886 7899999999999999
Q ss_pred hHHHHHHHHhCC-CCCC-HHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCCcHHHHhHHHHhhCCc
Q 007519 485 IKEAEEFVLRLP-FEPD-HRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRH 552 (600)
Q Consensus 485 ~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 552 (600)
.+.|.+.+.+.. ..|. ...++.+...+. ..|++++|+..|+.+++++|+.|.+|..++.++---.+|
T Consensus 438 v~~A~q~y~rAI~~nPt~AeAhsNLasi~k-DsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw 506 (966)
T KOG4626|consen 438 VSAAIQCYTRAIQINPTFAEAHSNLASIYK-DSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDW 506 (966)
T ss_pred HHHHHHHHHHHHhcCcHHHHHHhhHHHHhh-ccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcc
Confidence 999999998875 6775 457888888999 999999999999999999999999999988876544443
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.6e-21 Score=179.62 Aligned_cols=412 Identities=12% Similarity=0.125 Sum_probs=335.1
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHhcccCCc---hhHHHHHHHHHhcCChhHHHHHHccCCC---CCcchHHHHHHHHHhcC
Q 007519 138 WNAMIAGYVECCMMGEAIVLFEEMEERNV---VTWTSMISGYCRAGEVEEGYCLFRRMPR---KNVVSWTAMIGGFAWNG 211 (600)
Q Consensus 138 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~ 211 (600)
...|..-..+.|++.+|++.-...-..|+ ...-.+-..+....+++....--....+ ....+|..+...+-..|
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~kerg 130 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKERG 130 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHhc
Confidence 45566667788999999987766553222 2222233455566666655443332222 24468999999999999
Q ss_pred ChhHHHHHHHHHHhhhcCCCCCC-hhhHHHHHHHHHhcCChhhHHHHhcccCCCCchh---HHHHHHHHHhcCChHHHHH
Q 007519 212 FHKESLLLFIEMKGICDNGNNCN-VQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEIS---WTSMIDGYLSVGQVSNAYY 287 (600)
Q Consensus 212 ~~~~a~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~A~~ 287 (600)
++++|+..++.+.+. .|+ ...|..+..++...|+.+.|.+.|.....-++.. .+.+...+...|++.+|..
T Consensus 131 ~~~~al~~y~~aiel-----~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~ 205 (966)
T KOG4626|consen 131 QLQDALALYRAAIEL-----KPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKA 205 (966)
T ss_pred hHHHHHHHHHHHHhc-----CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHH
Confidence 999999999999975 554 7789999999999999999999999888555543 3445666777899999999
Q ss_pred HHhhCCC--C-ChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhcccchhhhHHHHHHHhhhcC
Q 007519 288 LFHNMPD--R-DAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLN-ATFSVLFGAAGATANIDLGRQIHCVLMKTES 363 (600)
Q Consensus 288 ~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 363 (600)
.|.+..+ | -.++|+.|...+..+|+...|++.|++.++. .|+- ..|..|-..|...+.++.|...+..+.....
T Consensus 206 cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrp 283 (966)
T KOG4626|consen 206 CYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRP 283 (966)
T ss_pred HHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCC
Confidence 8887665 3 2468999999999999999999999999875 5654 4677888888888899999988887766543
Q ss_pred CCchhHHHHHHHHHHhcCChHHHHHHHhcCC--CCC-hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hhHHHHH
Q 007519 364 ESDLILENCLISMYAKCGVIDNAYNIFSNMV--SRD-LVSWNSMVMGFSHHGLANETLKVFESMLESGTHPN-SVTFLGI 439 (600)
Q Consensus 364 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~l 439 (600)
. ....+..+...|-.+|.++-|.+.|++.. .|+ ...|+.|..++...|++.+|...+.+.... .|+ ....+.|
T Consensus 284 n-~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l--~p~hadam~NL 360 (966)
T KOG4626|consen 284 N-HAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRL--CPNHADAMNNL 360 (966)
T ss_pred c-chhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHh--CCccHHHHHHH
Confidence 2 45666777788899999999999999987 343 578999999999999999999999999874 454 4678899
Q ss_pred HHHhcccCchHHHHHHHHHHHhhcCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhCC-CCCCH-HHHHHHHHHHhhhhC
Q 007519 440 LSACSHAGLVSRGWELFNAMFDVYKIQPG-PEHYVSMINLLGRAGKIKEAEEFVLRLP-FEPDH-RIWGALLGACGFCEG 516 (600)
Q Consensus 440 ~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~-~~~~~l~~~~~~~~g 516 (600)
...+...|.+++|.++|....+ +.|. ....+.|+..|-.+|++++|...+++.. ++|.. ..++.+...+. ..|
T Consensus 361 gni~~E~~~~e~A~~ly~~al~---v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~k-e~g 436 (966)
T KOG4626|consen 361 GNIYREQGKIEEATRLYLKALE---VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYK-EMG 436 (966)
T ss_pred HHHHHHhccchHHHHHHHHHHh---hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHH-Hhh
Confidence 9999999999999999999874 5775 7789999999999999999999998864 78874 57899999999 999
Q ss_pred CHHHHHHHHHHHHhhCCCCCCcHHHHhHHHHhhCCcHHHHHHHHHHh
Q 007519 517 NAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMG 563 (600)
Q Consensus 517 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 563 (600)
+...|++.+.+++.++|.-+.++..|+.+|...|++.+|++-++...
T Consensus 437 ~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aL 483 (966)
T KOG4626|consen 437 DVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTAL 483 (966)
T ss_pred hHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHH
Confidence 99999999999999999889999999999999999999999554433
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.5e-19 Score=187.68 Aligned_cols=249 Identities=15% Similarity=0.046 Sum_probs=176.0
Q ss_pred CCChhHHHHHHHHHHHCC-CCCC-hhHHHHHHHHHhcccchhhhHHHHHHHhhhcCCCchhHHHHHHHHHHhcCChHHHH
Q 007519 310 NELFVEATYLFMEMRAHG-VPPL-NATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAY 387 (600)
Q Consensus 310 ~g~~~~a~~~~~~m~~~g-~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 387 (600)
.+++++|++.|+.....+ ..|+ ...+..+...+...|+++.|...++...+.... ....|..+...+...|++++|.
T Consensus 307 ~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~-~~~~~~~la~~~~~~g~~~eA~ 385 (615)
T TIGR00990 307 DESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPR-VTQSYIKRASMNLELGDPDKAE 385 (615)
T ss_pred hhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHCCCHHHHH
Confidence 356777777777776654 2233 234555555666777777777777766654322 3445666777777888888888
Q ss_pred HHHhcCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccCchHHHHHHHHHHHhhcC
Q 007519 388 NIFSNMV---SRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYK 464 (600)
Q Consensus 388 ~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 464 (600)
..|+++. +.+...|..+...+...|++++|+..|++..+.. +.+...+..+..++.+.|++++|...++++.+.
T Consensus 386 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~-- 462 (615)
T TIGR00990 386 EDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN-- 462 (615)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--
Confidence 8887765 4456778888888888888888888888888742 334556666777788888888888888888753
Q ss_pred CCC-CcchHHHHHHHHhhcCChHHHHHHHHhCC-CCCCH-HH-------HHHHHHHHhhhhCCHHHHHHHHHHHHhhCCC
Q 007519 465 IQP-GPEHYVSMINLLGRAGKIKEAEEFVLRLP-FEPDH-RI-------WGALLGACGFCEGNAEIAEHAAKRLLELDPL 534 (600)
Q Consensus 465 ~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~-~~-------~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~ 534 (600)
.| ++..++.++.++...|++++|.+.|++.. ..|+. .. ++.....+. ..|++++|+..++++++++|+
T Consensus 463 -~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~-~~~~~~eA~~~~~kAl~l~p~ 540 (615)
T TIGR00990 463 -FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQ-WKQDFIEAENLCEKALIIDPE 540 (615)
T ss_pred -CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHH-HhhhHHHHHHHHHHHHhcCCC
Confidence 45 46778888888888888888888887753 33321 11 111122223 458888899999998888888
Q ss_pred CCCcHHHHhHHHHhhCCcHHHHHHHHHHhh
Q 007519 535 NAPAHVVLCNIYAASGRHVEEHKLRMDMGL 564 (600)
Q Consensus 535 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 564 (600)
+..++..++.++.+.|++++|.++++...+
T Consensus 541 ~~~a~~~la~~~~~~g~~~eAi~~~e~A~~ 570 (615)
T TIGR00990 541 CDIAVATMAQLLLQQGDVDEALKLFERAAE 570 (615)
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 878888888888889999998887766543
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.3e-19 Score=177.18 Aligned_cols=547 Identities=12% Similarity=0.068 Sum_probs=366.6
Q ss_pred CCCccchhHHHHHHHhcCChhhHHHHhccCCC------CCcchHHHHHHHHHcCCChhHHHHHhhhcCCCChhhHHHHHH
Q 007519 8 KSLVVHLTSSITKYSKRGFIDEAKALFQLMPQ------RNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMIC 81 (600)
Q Consensus 8 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~ 81 (600)
|+++-.+-.=+......|++..|+.+|..... ||+ ...+..++.+.|+.+.|+..|+.+++-|+...++++.
T Consensus 161 p~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~--rIgig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~ 238 (1018)
T KOG2002|consen 161 PDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADV--RIGIGHCFWKLGMSEKALLAFERALQLDPTCVSALVA 238 (1018)
T ss_pred CcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCc--cchhhhHHHhccchhhHHHHHHHHHhcChhhHHHHHH
Confidence 33443343333444556778888888887543 333 2334456667788888888888887744433333332
Q ss_pred ---HHHhcC---ChHHHHHHhhcCCC---CCceeHHHHHHHHHHCCChhHHHHHhhcCCCC------CcccHHHHHHHHH
Q 007519 82 ---GLADAG---RVCEARKLFEEMPE---RNVVSWNSMVVGLIRNGELNEARKVFNSMPIK------NVISWNAMIAGYV 146 (600)
Q Consensus 82 ---~~~~~g---~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~l~~~~~ 146 (600)
.-.... .+..+...+...-. .|+...+.|...|.-.|+++.+.++...+... -..+|..+.++|-
T Consensus 239 L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~H 318 (1018)
T KOG2002|consen 239 LGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYH 318 (1018)
T ss_pred HHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 222233 34455555554433 56777888888888888888888888777651 2345777888888
Q ss_pred hcCCHhHHHHHHHhccc--CCch--hHHHHHHHHHhcCChhHHHHHHccCCC--C-CcchHHHHHHHHHhcC----ChhH
Q 007519 147 ECCMMGEAIVLFEEMEE--RNVV--TWTSMISGYCRAGEVEEGYCLFRRMPR--K-NVVSWTAMIGGFAWNG----FHKE 215 (600)
Q Consensus 147 ~~~~~~~A~~~~~~~~~--~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~----~~~~ 215 (600)
..|++++|...|-+..+ ++.. .+--+...+.+.|+++.+...|+++.. | +..+...|...|...+ ..+.
T Consensus 319 a~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~ 398 (1018)
T KOG2002|consen 319 AQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDK 398 (1018)
T ss_pred hhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHH
Confidence 88888888888887774 3322 234567788888888888888887764 3 3345555555555553 4566
Q ss_pred HHHHHHHHHhhhcCCCCCChhhHHHHHHHHHhcCChhhHHHHhcccC--------CCCchhHHHHHHHHHhcCChHHHHH
Q 007519 216 SLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVP--------VRDEISWTSMIDGYLSVGQVSNAYY 287 (600)
Q Consensus 216 a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--------~~~~~~~~~l~~~~~~~~~~~~A~~ 287 (600)
|..++.+..+. .+.|...|..+...+....- ..++..|..+. +..+...|.+...+...|.+..|..
T Consensus 399 a~~~l~K~~~~----~~~d~~a~l~laql~e~~d~-~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~ 473 (1018)
T KOG2002|consen 399 ASNVLGKVLEQ----TPVDSEAWLELAQLLEQTDP-WASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALE 473 (1018)
T ss_pred HHHHHHHHHhc----ccccHHHHHHHHHHHHhcCh-HHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHH
Confidence 77777776653 24456667666665554433 22244433322 5567778888888888888888888
Q ss_pred HHhhCCC-------CCh------hhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHH-HHHHHhcccchhhhHH
Q 007519 288 LFHNMPD-------RDA------VAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSV-LFGAAGATANIDLGRQ 353 (600)
Q Consensus 288 ~~~~~~~-------~~~------~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~-l~~~~~~~~~~~~a~~ 353 (600)
.|..... +|. .+-..+...+-..++++.|.+.|....+. .|+-..... +.......++...|..
T Consensus 474 ~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~ea~~ 551 (1018)
T KOG2002|consen 474 HFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNLYEASL 551 (1018)
T ss_pred HHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCcHHHHH
Confidence 8876543 122 12333555666778888888999888876 566554333 3323334567777888
Q ss_pred HHHHHhhhcCCCchhHHHHHHHHHHhcCChHHHHHHHhcCC-----CCChhhHHHHHHHHH------------hcCChHH
Q 007519 354 IHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMV-----SRDLVSWNSMVMGFS------------HHGLANE 416 (600)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-----~~~~~~~~~l~~~~~------------~~~~~~~ 416 (600)
.+.......- .++..++.+...+.+...+..|..-|..+. .+|..+.-.|.+.+. ..+..++
T Consensus 552 ~lk~~l~~d~-~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~K 630 (1018)
T KOG2002|consen 552 LLKDALNIDS-SNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEK 630 (1018)
T ss_pred HHHHHHhccc-CCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHH
Confidence 8776665432 245555666778888888877777554443 335554445555443 2345678
Q ss_pred HHHHHHHHHHcCCCCChhHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhCC
Q 007519 417 TLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLP 496 (600)
Q Consensus 417 a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 496 (600)
|+++|.+..... +-|...-+.+.-.++..|++.+|..+|....+. ..-...+|..++.+|..+|++-.|+++|+..-
T Consensus 631 Alq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa--~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~l 707 (1018)
T KOG2002|consen 631 ALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREA--TSDFEDVWLNLAHCYVEQGQYRLAIQMYENCL 707 (1018)
T ss_pred HHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHH--HhhCCceeeeHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999888753 556677778888889999999999999999885 23356689999999999999999999998753
Q ss_pred ----CCCCHHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCCcHHHHhHHHHh-------------------hCCcH
Q 007519 497 ----FEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAA-------------------SGRHV 553 (600)
Q Consensus 497 ----~~p~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~-------------------~g~~~ 553 (600)
...+..+.+.|..++. ..|++.+|.+.+..+..+.|.++..-..++.+..+ .+..+
T Consensus 708 kkf~~~~~~~vl~~Lara~y-~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~lr~~k~t~eev~~a~~~le 786 (1018)
T KOG2002|consen 708 KKFYKKNRSEVLHYLARAWY-EAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAESILRLEKRTLEEVLEAVKELE 786 (1018)
T ss_pred HHhcccCCHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHH
Confidence 3456778889999998 99999999999999999999998887777766544 34556
Q ss_pred HHHHHHHHHhhcCCc
Q 007519 554 EEHKLRMDMGLKGVR 568 (600)
Q Consensus 554 ~A~~~~~~~~~~~~~ 568 (600)
.|.++++.|...+-+
T Consensus 787 ~a~r~F~~ls~~~d~ 801 (1018)
T KOG2002|consen 787 EARRLFTELSKNGDK 801 (1018)
T ss_pred HHHHHHHHHHhcCCC
Confidence 777777777765543
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.7e-19 Score=178.08 Aligned_cols=532 Identities=12% Similarity=0.079 Sum_probs=383.8
Q ss_pred HHhcCCh--hhHHHHhccCCC---CCcchHHHHHHHHHcCCChhHHHHHhhhcCC------CChhhHHHHHHHHHhcCCh
Q 007519 21 YSKRGFI--DEAKALFQLMPQ---RNVVSYNAMLSGFLQNGRLSEARRLFEEMPE------RNVVSWTAMICGLADAGRV 89 (600)
Q Consensus 21 ~~~~g~~--~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~------~~~~~~~~l~~~~~~~g~~ 89 (600)
|...|.. +.|...|....+ +|+-.+..-+......|++..|+.+|..+.. +|+.. .+..++.+.|+.
T Consensus 138 ~l~~~~~~~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rI--gig~Cf~kl~~~ 215 (1018)
T KOG2002|consen 138 LLLEGDKSMDDADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRI--GIGHCFWKLGMS 215 (1018)
T ss_pred hhhcCCccHHHHHHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccc--hhhhHHHhccch
Confidence 3334444 778887877765 3444444444555688999999999999764 34332 345667799999
Q ss_pred HHHHHHhhcCCCCCceeHHHHHHH---HHHC---CChhHHHHHhhcCCC---CCcccHHHHHHHHHhcCCHhHHHHHHHh
Q 007519 90 CEARKLFEEMPERNVVSWNSMVVG---LIRN---GELNEARKVFNSMPI---KNVISWNAMIAGYVECCMMGEAIVLFEE 160 (600)
Q Consensus 90 ~~A~~~~~~~~~~~~~~~~~l~~~---~~~~---~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 160 (600)
+.|+..|++..+-|+..-++++.. -... ..+..+..++...-. .++...+.|.+.|.-.|++..+..+...
T Consensus 216 ~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ 295 (1018)
T KOG2002|consen 216 EKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEH 295 (1018)
T ss_pred hhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHH
Confidence 999999999998665444433322 2222 334456666665543 6888999999999999999999999988
Q ss_pred cccCC------chhHHHHHHHHHhcCChhHHHHHHccCCC--CC--cchHHHHHHHHHhcCChhHHHHHHHHHHhhhcCC
Q 007519 161 MEERN------VVTWTSMISGYCRAGEVEEGYCLFRRMPR--KN--VVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNG 230 (600)
Q Consensus 161 ~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~ 230 (600)
+...+ ...|--+..+|...|++++|..+|-...+ ++ +..+-.+.+.+.+.|+.+.+...|+.+...
T Consensus 296 ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~---- 371 (1018)
T KOG2002|consen 296 AIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQ---- 371 (1018)
T ss_pred HHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHh----
Confidence 87533 34577889999999999999999987765 33 345667889999999999999999999975
Q ss_pred CCCChhhHHHHHHHHHhcC----ChhhHHHHhcccC---CCCchhHHHHHHHHHhcCC------hHHHHHHHhhCC-CCC
Q 007519 231 NNCNVQSCNSMINGYIRFG----RLEEAQNLFDTVP---VRDEISWTSMIDGYLSVGQ------VSNAYYLFHNMP-DRD 296 (600)
Q Consensus 231 ~~~~~~~~~~l~~~~~~~~----~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~------~~~A~~~~~~~~-~~~ 296 (600)
.+.+..|...|...|...+ ..+.|..++.... +.|...|-.+...+....- +..|..++.... ...
T Consensus 372 ~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip 451 (1018)
T KOG2002|consen 372 LPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIP 451 (1018)
T ss_pred CcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCC
Confidence 2334567777777777764 5677888887776 4456667776666654433 333343333222 256
Q ss_pred hhhHHHHHHHHHhCCChhHHHHHHHHHHHC---CCCCChh------HHHHHHHHHhcccchhhhHHHHHHHhhhcCCCch
Q 007519 297 AVAWTAMISGLVQNELFVEATYLFMEMRAH---GVPPLNA------TFSVLFGAAGATANIDLGRQIHCVLMKTESESDL 367 (600)
Q Consensus 297 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---g~~p~~~------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 367 (600)
+...|.+...+...|++..|...|+..... ...+|.. +--.+....-..++.+.|.+.|..+.+..+. =+
T Consensus 452 ~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~-YI 530 (1018)
T KOG2002|consen 452 PEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPG-YI 530 (1018)
T ss_pred HHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCch-hH
Confidence 678899999999999999999999988765 2233332 2333445556778999999999988876431 12
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhcCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCCChhHHHHHHHHh
Q 007519 368 ILENCLISMYAKCGVIDNAYNIFSNMV---SRDLVSWNSMVMGFSHHGLANETLKVFESMLES-GTHPNSVTFLGILSAC 443 (600)
Q Consensus 368 ~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-~~~p~~~~~~~l~~~~ 443 (600)
..|-.+.......+...+|...++... ..++..|+.+...+.....+..|.+-|....+. ...+|..+...|...|
T Consensus 531 d~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~ 610 (1018)
T KOG2002|consen 531 DAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVY 610 (1018)
T ss_pred HHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHH
Confidence 223333322333467788988888876 567788888888999988888888877766654 2235666665665544
Q ss_pred cc------------cCchHHHHHHHHHHHhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhCC--CCCCHHHHHHHH
Q 007519 444 SH------------AGLVSRGWELFNAMFDVYKIQP-GPEHYVSMINLLGRAGKIKEAEEFVLRLP--FEPDHRIWGALL 508 (600)
Q Consensus 444 ~~------------~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~ 508 (600)
.+ .+..++|+++|.++.+ ..| +...-+-++-+++..|++.+|..+|.+.. ......+|.++.
T Consensus 611 ~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~---~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNla 687 (1018)
T KOG2002|consen 611 IQALHNPSRNPEKEKKHQEKALQLYGKVLR---NDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLA 687 (1018)
T ss_pred HHHhcccccChHHHHHHHHHHHHHHHHHHh---cCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHH
Confidence 32 2456788888888875 356 78888889999999999999999998875 333556888999
Q ss_pred HHHhhhhCCHHHHHHHHHHHHhh--CCCCCCcHHHHhHHHHhhCCcHHHHH-HHHHHh
Q 007519 509 GACGFCEGNAEIAEHAAKRLLEL--DPLNAPAHVVLCNIYAASGRHVEEHK-LRMDMG 563 (600)
Q Consensus 509 ~~~~~~~g~~~~a~~~~~~~~~~--~p~~~~~~~~l~~~~~~~g~~~~A~~-~~~~~~ 563 (600)
.+|. ..|++..|+++|+...+. .-+++.+...|+.++.+.|.+.+|.+ +...+.
T Consensus 688 h~~~-e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~ 744 (1018)
T KOG2002|consen 688 HCYV-EQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARH 744 (1018)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 9999 999999999999999883 23467889999999999999999999 444443
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.7e-18 Score=179.03 Aligned_cols=326 Identities=10% Similarity=0.017 Sum_probs=224.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHhcCChhhHHHHhcccC---CCCchhHHHHHHHH
Q 007519 200 WTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVP---VRDEISWTSMIDGY 276 (600)
Q Consensus 200 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~ 276 (600)
...++..+.+.|+++.|+.+++..... .+-+...+..++.+....|++++|...++.+. +.++..+..+...+
T Consensus 45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~----~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l 120 (656)
T PRK15174 45 IILFAIACLRKDETDVGLTLLSDRVLT----AKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVL 120 (656)
T ss_pred HHHHHHHHHhcCCcchhHHHhHHHHHh----CCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 344555666667777777776666653 12223344445555556677777777766665 44455666666667
Q ss_pred HhcCChHHHHHHHhhCCC---CChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhcccchhhhHH
Q 007519 277 LSVGQVSNAYYLFHNMPD---RDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQ 353 (600)
Q Consensus 277 ~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~ 353 (600)
...|++++|+..|++... .+...+..+...+...|++++|...++.+.... |+.......+..+...|++++|..
T Consensus 121 ~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~--P~~~~a~~~~~~l~~~g~~~eA~~ 198 (656)
T PRK15174 121 LKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEV--PPRGDMIATCLSFLNKSRLPEDHD 198 (656)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHcCCHHHHHH
Confidence 777777777777766544 244566667777777777777777777766542 322222222234566777777777
Q ss_pred HHHHHhhhcCCCchhHHHHHHHHHHhcCChHHHHHHHhcCC---CCChhhHHHHHHHHHhcCChHH----HHHHHHHHHH
Q 007519 354 IHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMV---SRDLVSWNSMVMGFSHHGLANE----TLKVFESMLE 426 (600)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~----a~~~~~~m~~ 426 (600)
.++.+.+....++......+..++...|++++|...+++.. +.+...+..+...+...|++++ |+..|++...
T Consensus 199 ~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~ 278 (656)
T PRK15174 199 LARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ 278 (656)
T ss_pred HHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh
Confidence 77766655433344444455667778888888888888765 4456777788888888898885 7888998887
Q ss_pred cCCCCChhHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhCC-CCCCHHHH
Q 007519 427 SGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQP-GPEHYVSMINLLGRAGKIKEAEEFVLRLP-FEPDHRIW 504 (600)
Q Consensus 427 ~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~ 504 (600)
.. +.+...+..+...+...|++++|...++++.+. .| +...+..++.+|.+.|++++|.+.++++. ..|+...+
T Consensus 279 l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l---~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~ 354 (656)
T PRK15174 279 FN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT---HPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKW 354 (656)
T ss_pred hC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHH
Confidence 42 334567777888889999999999999998864 56 46677788899999999999999998875 56665444
Q ss_pred HH-HHHHHhhhhCCHHHHHHHHHHHHhhCCCCC
Q 007519 505 GA-LLGACGFCEGNAEIAEHAAKRLLELDPLNA 536 (600)
Q Consensus 505 ~~-l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 536 (600)
.. +..++. ..|+.++|+..++++++..|++.
T Consensus 355 ~~~~a~al~-~~G~~deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 355 NRYAAAALL-QAGKTSEAESVFEHYIQARASHL 386 (656)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHhChhhc
Confidence 33 344566 88999999999999999988654
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.4e-19 Score=177.09 Aligned_cols=267 Identities=13% Similarity=0.051 Sum_probs=172.1
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC---hhHHHHHHHHHhcccchhhhHHHHHHHhhhcCCCchhHHHHHHH
Q 007519 299 AWTAMISGLVQNELFVEATYLFMEMRAHGVPPL---NATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLIS 375 (600)
Q Consensus 299 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 375 (600)
++..+...+...|++++|+.+++.+...+..++ ...+..+...+...|+++.|..++..+.+.. +.+..++..++.
T Consensus 71 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~ 149 (389)
T PRK11788 71 LHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEG-DFAEGALQQLLE 149 (389)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHH
Confidence 344444444444444444444444443221111 1223334444444444444444444444321 123444555555
Q ss_pred HHHhcCChHHHHHHHhcCCC--CC------hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccC
Q 007519 376 MYAKCGVIDNAYNIFSNMVS--RD------LVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAG 447 (600)
Q Consensus 376 ~~~~~~~~~~A~~~~~~~~~--~~------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g 447 (600)
.+.+.|++++|.+.++.+.. |+ ...+..+...+...|++++|...|+++.+.. +.+...+..+...+.+.|
T Consensus 150 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g 228 (389)
T PRK11788 150 IYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQG 228 (389)
T ss_pred HHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCC
Confidence 56666666666666655541 11 1134456667778888888888888887642 333456667778888889
Q ss_pred chHHHHHHHHHHHhhcCCCCC--cchHHHHHHHHhhcCChHHHHHHHHhCC-CCCCHHHHHHHHHHHhhhhCCHHHHHHH
Q 007519 448 LVSRGWELFNAMFDVYKIQPG--PEHYVSMINLLGRAGKIKEAEEFVLRLP-FEPDHRIWGALLGACGFCEGNAEIAEHA 524 (600)
Q Consensus 448 ~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~~~~~~~~g~~~~a~~~ 524 (600)
++++|.++++++.+. .|+ ..++..++.+|...|++++|.+.++++. ..|+...+..+...+. ..|++++|+..
T Consensus 229 ~~~~A~~~~~~~~~~---~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~-~~g~~~~A~~~ 304 (389)
T PRK11788 229 DYAAAIEALERVEEQ---DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLE-EQEGPEAAQAL 304 (389)
T ss_pred CHHHHHHHHHHHHHH---ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHH-HhCCHHHHHHH
Confidence 999999998888764 343 4567788889999999999999988864 5677767777777777 88999999999
Q ss_pred HHHHHhhCCCCCCcHHHHhHHHHh---hCCcHHHHHHHHHHhhcCCccCCC
Q 007519 525 AKRLLELDPLNAPAHVVLCNIYAA---SGRHVEEHKLRMDMGLKGVRKVPG 572 (600)
Q Consensus 525 ~~~~~~~~p~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~ 572 (600)
++++++..|+++ .+..+...+.. .|+.+++..+++.+.++++++.|.
T Consensus 305 l~~~l~~~P~~~-~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 305 LREQLRRHPSLR-GFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred HHHHHHhCcCHH-HHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 999999999544 55555555443 568899999999999999988886
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.2e-18 Score=172.17 Aligned_cols=287 Identities=17% Similarity=0.157 Sum_probs=194.5
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhhhcCCCCC-ChhhHHHHHHHHHhcCChhhHHHHhcccCCCC-------chhHHHHHH
Q 007519 203 MIGGFAWNGFHKESLLLFIEMKGICDNGNNC-NVQSCNSMINGYIRFGRLEEAQNLFDTVPVRD-------EISWTSMID 274 (600)
Q Consensus 203 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~~l~~ 274 (600)
....+...|++++|+..|+++.+. .| +..++..+...+...|++++|..+++.+.... ...+..++.
T Consensus 41 ~g~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~ 115 (389)
T PRK11788 41 KGLNFLLNEQPDKAIDLFIEMLKV-----DPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQ 115 (389)
T ss_pred HHHHHHhcCChHHHHHHHHHHHhc-----CcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Confidence 344556677788888888888754 33 34566677777777777777777776655211 123344444
Q ss_pred HHHhcCChHHHHHHHhhCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhcccchhhhHHH
Q 007519 275 GYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQI 354 (600)
Q Consensus 275 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~ 354 (600)
.|...|++++|..+| +++.+.. +++..++..+...+...|++++|...
T Consensus 116 ~~~~~g~~~~A~~~~-------------------------------~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~ 163 (389)
T PRK11788 116 DYLKAGLLDRAEELF-------------------------------LQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDV 163 (389)
T ss_pred HHHHCCCHHHHHHHH-------------------------------HHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHH
Confidence 444445555555444 4444321 22333444444444444444444444
Q ss_pred HHHHhhhcCCCc----hhHHHHHHHHHHhcCChHHHHHHHhcCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 007519 355 HCVLMKTESESD----LILENCLISMYAKCGVIDNAYNIFSNMV---SRDLVSWNSMVMGFSHHGLANETLKVFESMLES 427 (600)
Q Consensus 355 ~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 427 (600)
++.+.+.+..+. ...+..+...+.+.|++++|...|+++. +.+...+..+...+.+.|++++|.++|+++.+.
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 243 (389)
T PRK11788 164 AERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQ 243 (389)
T ss_pred HHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 444444332221 1234456677788888888888888875 334567778889999999999999999999875
Q ss_pred CCCCChhHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhCC-CCCCHHHHHH
Q 007519 428 GTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLP-FEPDHRIWGA 506 (600)
Q Consensus 428 ~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~ 506 (600)
+......++..+..+|...|++++|.+.++++.+. .|+...+..++..+.+.|++++|.++++++. ..|+...++.
T Consensus 244 ~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~---~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~ 320 (389)
T PRK11788 244 DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE---YPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHR 320 (389)
T ss_pred ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHH
Confidence 32222456778889999999999999999998864 6776777899999999999999999998764 6799888887
Q ss_pred HHHHHhhh---hCCHHHHHHHHHHHHh
Q 007519 507 LLGACGFC---EGNAEIAEHAAKRLLE 530 (600)
Q Consensus 507 l~~~~~~~---~g~~~~a~~~~~~~~~ 530 (600)
++..+. . .|+..+++..++++++
T Consensus 321 l~~~~~-~~~~~g~~~~a~~~~~~~~~ 346 (389)
T PRK11788 321 LLDYHL-AEAEEGRAKESLLLLRDLVG 346 (389)
T ss_pred HHHHhh-hccCCccchhHHHHHHHHHH
Confidence 777654 3 4588888888888876
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.85 E-value=1e-17 Score=174.16 Aligned_cols=411 Identities=11% Similarity=-0.002 Sum_probs=259.3
Q ss_pred HHHHHHHHHHCCChhHHHHHhhcCCC--CCcccHHHHHHHHHhcCCHhHHHHHHHhccc--C-CchhHHHHHHHHHhcCC
Q 007519 107 WNSMVVGLIRNGELNEARKVFNSMPI--KNVISWNAMIAGYVECCMMGEAIVLFEEMEE--R-NVVTWTSMISGYCRAGE 181 (600)
Q Consensus 107 ~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~g~ 181 (600)
+......+.+.|+++.|++.|++... |++..|..+..+|.+.|++++|+..++...+ | +..++..+..+|...|+
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~ 209 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGK 209 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC
Confidence 33455666667777777777776654 5556666666777777777777777776663 2 33456666677777777
Q ss_pred hhHHHHHHccCCCCC---cchHHHHHHHHHhcCChhHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHhcCChhhHHHHh
Q 007519 182 VEEGYCLFRRMPRKN---VVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLF 258 (600)
Q Consensus 182 ~~~A~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 258 (600)
+++|+..|......+ ......++..+.. ..+........+. .+++...+..+.. +...........-+
T Consensus 210 ~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~a~~~~~~~l~~----~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 280 (615)
T TIGR00990 210 YADALLDLTASCIIDGFRNEQSAQAVERLLK----KFAESKAKEILET----KPENLPSVTFVGN-YLQSFRPKPRPAGL 280 (615)
T ss_pred HHHHHHHHHHHHHhCCCccHHHHHHHHHHHH----HHHHHHHHHHHhc----CCCCCCCHHHHHH-HHHHccCCcchhhh
Confidence 777776654432111 1111111111111 1222222222221 1122222222222 22111111111111
Q ss_pred cccCCCCc---hhHHHHHHHH---HhcCChHHHHHHHhhCCC------CChhhHHHHHHHHHhCCChhHHHHHHHHHHHC
Q 007519 259 DTVPVRDE---ISWTSMIDGY---LSVGQVSNAYYLFHNMPD------RDAVAWTAMISGLVQNELFVEATYLFMEMRAH 326 (600)
Q Consensus 259 ~~~~~~~~---~~~~~l~~~~---~~~~~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 326 (600)
......+. ..+..+...+ ...+++++|...|+...+ .....|+.+...+...|++++|+..|++..+.
T Consensus 281 ~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l 360 (615)
T TIGR00990 281 EDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL 360 (615)
T ss_pred hcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 11111111 1111111111 234678888888877653 23456777778888889999999999888875
Q ss_pred CCCCC-hhHHHHHHHHHhcccchhhhHHHHHHHhhhcCCCchhHHHHHHHHHHhcCChHHHHHHHhcCC---CCChhhHH
Q 007519 327 GVPPL-NATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMV---SRDLVSWN 402 (600)
Q Consensus 327 g~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~ 402 (600)
.|+ ...+..+...+...|+++.|...++.+.+... .+..++..+...+...|++++|...|++.. +.+...+.
T Consensus 361 --~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~ 437 (615)
T TIGR00990 361 --DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNS-EDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHI 437 (615)
T ss_pred --CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHH
Confidence 454 44677777788888899999998888776643 356778888889999999999999998876 44567777
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCCC-cch-------HHH
Q 007519 403 SMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPG-PEH-------YVS 474 (600)
Q Consensus 403 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~-------~~~ 474 (600)
.+..++.+.|++++|+..|++.... .+.+...+..+...+...|++++|.+.|+++.+. .|+ ... ++.
T Consensus 438 ~la~~~~~~g~~~eA~~~~~~al~~-~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l---~p~~~~~~~~~~~l~~~ 513 (615)
T TIGR00990 438 QLGVTQYKEGSIASSMATFRRCKKN-FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL---EKETKPMYMNVLPLINK 513 (615)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc---CCccccccccHHHHHHH
Confidence 8888899999999999999998874 2344577788888899999999999999998754 342 111 111
Q ss_pred HHHHHhhcCChHHHHHHHHhC-CCCCCHH-HHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCC
Q 007519 475 MINLLGRAGKIKEAEEFVLRL-PFEPDHR-IWGALLGACGFCEGNAEIAEHAAKRLLELDPL 534 (600)
Q Consensus 475 l~~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~ 534 (600)
....+...|++++|.+++++. ...|+.. .+..+...+. ..|++++|+..++++.++.+.
T Consensus 514 a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~-~~g~~~eAi~~~e~A~~l~~~ 574 (615)
T TIGR00990 514 ALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLL-QQGDVDEALKLFERAAELART 574 (615)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH-HccCHHHHHHHHHHHHHHhcc
Confidence 222344579999999999885 4566544 5677777777 999999999999999998774
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.2e-17 Score=173.49 Aligned_cols=393 Identities=12% Similarity=0.043 Sum_probs=213.8
Q ss_pred HHHHHHHCCChhHHHHHhhcCCC---CCcccHHHHHHHHHhcCCHhHHHHHHHhccc--C-CchhHHHHHHHHHhcCChh
Q 007519 110 MVVGLIRNGELNEARKVFNSMPI---KNVISWNAMIAGYVECCMMGEAIVLFEEMEE--R-NVVTWTSMISGYCRAGEVE 183 (600)
Q Consensus 110 l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~ 183 (600)
.+......|+.++|++++.+... .+...+..+..++...|++++|.+++++..+ | +...+..++..+...|+++
T Consensus 21 ~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~ 100 (765)
T PRK10049 21 WLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYD 100 (765)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHH
Confidence 34444555555555555555443 1222344555555555555555555555432 2 2333444445555555555
Q ss_pred HHHHHHccCCC--C-CcchHHHHHHHHHhcCChhHHHHHHHHHHhhhcCCCCCC-hhhHHHHHHHHHhcCChhhHHHHhc
Q 007519 184 EGYCLFRRMPR--K-NVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCN-VQSCNSMINGYIRFGRLEEAQNLFD 259 (600)
Q Consensus 184 ~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~ 259 (600)
+|...+++..+ | +.. +..+...+...|+.++|+..++++.+. .|+ ...+..+..++...+..+.|...++
T Consensus 101 eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~-----~P~~~~~~~~la~~l~~~~~~e~Al~~l~ 174 (765)
T PRK10049 101 EALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPR-----APQTQQYPTEYVQALRNNRLSAPALGAID 174 (765)
T ss_pred HHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHCCChHHHHHHHH
Confidence 55555555432 1 222 444445555555555555555555543 332 2233334444444455555555444
Q ss_pred ccCCCCchhHHHHHHHHHhcCChHHHHHHHhhCCCCChhhHHHHHHHH-----HhCCCh---hHHHHHHHHHHHC-CCCC
Q 007519 260 TVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGL-----VQNELF---VEATYLFMEMRAH-GVPP 330 (600)
Q Consensus 260 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~-----~~~g~~---~~a~~~~~~m~~~-g~~p 330 (600)
.+.. ++.....+ .......++... ...+++ ++|+..++.+.+. ...|
T Consensus 175 ~~~~-~p~~~~~l-----------------------~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p 230 (765)
T PRK10049 175 DANL-TPAEKRDL-----------------------EADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNP 230 (765)
T ss_pred hCCC-CHHHHHHH-----------------------HHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCC
Confidence 4432 11100000 000111111111 111223 6677777777653 1223
Q ss_pred Chh-HHH----HHHHHHhcccchhhhHHHHHHHhhhcCC-CchhHHHHHHHHHHhcCChHHHHHHHhcCCC--CC-----
Q 007519 331 LNA-TFS----VLFGAAGATANIDLGRQIHCVLMKTESE-SDLILENCLISMYAKCGVIDNAYNIFSNMVS--RD----- 397 (600)
Q Consensus 331 ~~~-~~~----~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~----- 397 (600)
+.. .+. ..+.++...++.+.|...|+.+.+.+.+ |+. ....+..+|...|++++|+..|+++.. |.
T Consensus 231 ~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~ 309 (765)
T PRK10049 231 DATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLS 309 (765)
T ss_pred ccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCC
Confidence 221 111 1123344557777777777777666532 221 122246677788888888888877652 21
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHHcC-----------CCCCh---hHHHHHHHHhcccCchHHHHHHHHHHHhhc
Q 007519 398 LVSWNSMVMGFSHHGLANETLKVFESMLESG-----------THPNS---VTFLGILSACSHAGLVSRGWELFNAMFDVY 463 (600)
Q Consensus 398 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-----------~~p~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 463 (600)
......+..++...|++++|..+++.+.... -.|+. ..+..+...+...|++++|.+.++++...
T Consensus 310 ~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~- 388 (765)
T PRK10049 310 DEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN- 388 (765)
T ss_pred hHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-
Confidence 2334556667788888888888888887642 01221 13344556677788888888888888754
Q ss_pred CCCC-CcchHHHHHHHHhhcCChHHHHHHHHhCC-CCCCHH-HHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCC
Q 007519 464 KIQP-GPEHYVSMINLLGRAGKIKEAEEFVLRLP-FEPDHR-IWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAP 537 (600)
Q Consensus 464 ~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~-~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 537 (600)
.| +...+..++.++...|++++|++.+++.. ..|+.. .+......+. ..|++++|+..++++++..|+++.
T Consensus 389 --~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al-~~~~~~~A~~~~~~ll~~~Pd~~~ 462 (765)
T PRK10049 389 --APGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTAL-DLQEWRQMDVLTDDVVAREPQDPG 462 (765)
T ss_pred --CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHH-HhCCHHHHHHHHHHHHHhCCCCHH
Confidence 45 56777888888888888888888888764 566643 3344444455 778888888888888888886663
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=6e-17 Score=167.81 Aligned_cols=432 Identities=12% Similarity=0.038 Sum_probs=297.1
Q ss_pred HHHHHhcCChHHHHHHhhcCCC--CCce-eHHHHHHHHHHCCChhHHHHHhhcCCCCCcccHHHH---HHHHHhcCCHhH
Q 007519 80 ICGLADAGRVCEARKLFEEMPE--RNVV-SWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAM---IAGYVECCMMGE 153 (600)
Q Consensus 80 ~~~~~~~g~~~~A~~~~~~~~~--~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l---~~~~~~~~~~~~ 153 (600)
+-...++|+++.|++.|++..+ |+.. ....++..+...|+.++|+..+++...|+...+..+ ...+...|++++
T Consensus 41 aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~ 120 (822)
T PRK14574 41 LIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQ 120 (822)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHH
Confidence 3345699999999999999987 4321 233888888899999999999999987655444433 456778899999
Q ss_pred HHHHHHhccc--C-CchhHHHHHHHHHhcCChhHHHHHHccCCCCCc--chHHHHHHHHHhcCChhHHHHHHHHHHhhhc
Q 007519 154 AIVLFEEMEE--R-NVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNV--VSWTAMIGGFAWNGFHKESLLLFIEMKGICD 228 (600)
Q Consensus 154 A~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 228 (600)
|.++|+++.+ | ++..+..++..+...++.++|++.++++...++ ..+..++..+...++..+|++.++++.+.
T Consensus 121 Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~-- 198 (822)
T PRK14574 121 ALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVRL-- 198 (822)
T ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHHh--
Confidence 9999999884 3 456667778889999999999999999986444 34433333333455665699999999975
Q ss_pred CCCCC-ChhhHHHHHHHHHhcCChhhHHHHhcccCCC-CchhHHHHHHHHHhcCChHHHHHHHhhCCCCChhhHHHHHHH
Q 007519 229 NGNNC-NVQSCNSMINGYIRFGRLEEAQNLFDTVPVR-DEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISG 306 (600)
Q Consensus 229 ~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~ 306 (600)
.| +...+..+..++.+.|-...|.++...-... +...+.-+ +.+.|.+..+....++.
T Consensus 199 ---~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l--------~~~~~a~~vr~a~~~~~--------- 258 (822)
T PRK14574 199 ---APTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQL--------ERDAAAEQVRMAVLPTR--------- 258 (822)
T ss_pred ---CCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHH--------HHHHHHHHHhhcccccc---------
Confidence 55 4666777888888999888888887764411 11111110 01111111111110000
Q ss_pred HHhCCC---hhHHHHHHHHHHHC-CCCCCh-hHH-H---HHHHHHhcccchhhhHHHHHHHhhhcCCCchhHHHHHHHHH
Q 007519 307 LVQNEL---FVEATYLFMEMRAH-GVPPLN-ATF-S---VLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMY 377 (600)
Q Consensus 307 ~~~~g~---~~~a~~~~~~m~~~-g~~p~~-~~~-~---~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 377 (600)
...++ .+.|+.-++.+... +-.|.. ..| . -.+-++...++...+...++.+...+.+....+-.++.++|
T Consensus 259 -~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~aday 337 (822)
T PRK14574 259 -SETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAY 337 (822)
T ss_pred -cchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHH
Confidence 00111 24455555554442 111322 111 1 22335566777777777777777777666666777888888
Q ss_pred HhcCChHHHHHHHhcCCCC---------ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCC-----------CCCh--h-
Q 007519 378 AKCGVIDNAYNIFSNMVSR---------DLVSWNSMVMGFSHHGLANETLKVFESMLESGT-----------HPNS--V- 434 (600)
Q Consensus 378 ~~~~~~~~A~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-----------~p~~--~- 434 (600)
...+.+++|+.+|+.+..+ +......|..++...+++++|..+++.+.+.-. .||+ .
T Consensus 338 l~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~ 417 (822)
T PRK14574 338 IDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIE 417 (822)
T ss_pred HhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHH
Confidence 8888888888888877421 223346778888899999999999999887311 1222 2
Q ss_pred HHHHHHHHhcccCchHHHHHHHHHHHhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhCC-CCCCHH-HHHHHHHHH
Q 007519 435 TFLGILSACSHAGLVSRGWELFNAMFDVYKIQP-GPEHYVSMINLLGRAGKIKEAEEFVLRLP-FEPDHR-IWGALLGAC 511 (600)
Q Consensus 435 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~-~~~~l~~~~ 511 (600)
.+..++..+...|++.+|++.++++... .| |......++..+...|.+.+|++.++... ..|+.. +....+.+.
T Consensus 418 ~~~l~a~~~~~~gdl~~Ae~~le~l~~~---aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~a 494 (822)
T PRK14574 418 GQTLLVQSLVALNDLPTAQKKLEDLSST---APANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETA 494 (822)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHH
Confidence 2334567788999999999999999753 67 78899999999999999999999998865 667654 455555666
Q ss_pred hhhhCCHHHHHHHHHHHHhhCCCCCCc
Q 007519 512 GFCEGNAEIAEHAAKRLLELDPLNAPA 538 (600)
Q Consensus 512 ~~~~g~~~~a~~~~~~~~~~~p~~~~~ 538 (600)
. ..|++.+|......+.+..|+++.+
T Consensus 495 l-~l~e~~~A~~~~~~l~~~~Pe~~~~ 520 (822)
T PRK14574 495 M-ALQEWHQMELLTDDVISRSPEDIPS 520 (822)
T ss_pred H-hhhhHHHHHHHHHHHHhhCCCchhH
Confidence 6 8999999999999999999977743
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=9.5e-18 Score=173.59 Aligned_cols=350 Identities=10% Similarity=-0.012 Sum_probs=272.3
Q ss_pred HhcCChhHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHhcCChhhHHHHhcccC---CCCchhHHHHHHHHHhcCChHH
Q 007519 208 AWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVP---VRDEISWTSMIDGYLSVGQVSN 284 (600)
Q Consensus 208 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~ 284 (600)
.++.+|+.-.-+|...-+. ...-..+..-...++..+.+.|++++|..+++... +.+......++.+....|++++
T Consensus 16 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~ 94 (656)
T PRK15174 16 LKQEDWEGLCLYFSQHPEK-VRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDA 94 (656)
T ss_pred hhhhchhhHhHHhhcccHh-hhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHH
Confidence 3455555554444443322 00112233345566778889999999999999886 5566677778888888999999
Q ss_pred HHHHHhhCCC---CChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC-hhHHHHHHHHHhcccchhhhHHHHHHHhh
Q 007519 285 AYYLFHNMPD---RDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPL-NATFSVLFGAAGATANIDLGRQIHCVLMK 360 (600)
Q Consensus 285 A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 360 (600)
|...|+++.. .+...+..+...+...|++++|+..++++.+. .|+ ...+..+..++...|+.+.|...+..+..
T Consensus 95 A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l--~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~ 172 (656)
T PRK15174 95 VLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLA--FSGNSQIFALHLRTLVLMDKELQAISLARTQAQ 172 (656)
T ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence 9999999865 35567888899999999999999999999885 454 55677788899999999999999997776
Q ss_pred hcCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCC----ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHH
Q 007519 361 TESESDLILENCLISMYAKCGVIDNAYNIFSNMVSR----DLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTF 436 (600)
Q Consensus 361 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~ 436 (600)
....+... +..+ ..+...|++++|...++.+... +...+..+..++...|++++|+..++++.... +.+...+
T Consensus 173 ~~P~~~~a-~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~ 249 (656)
T PRK15174 173 EVPPRGDM-IATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALR 249 (656)
T ss_pred hCCCCHHH-HHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHH
Confidence 65544333 3333 3478899999999999987632 33344556678899999999999999999753 3445667
Q ss_pred HHHHHHhcccCchHH----HHHHHHHHHhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhCC-CCCCH-HHHHHHHH
Q 007519 437 LGILSACSHAGLVSR----GWELFNAMFDVYKIQP-GPEHYVSMINLLGRAGKIKEAEEFVLRLP-FEPDH-RIWGALLG 509 (600)
Q Consensus 437 ~~l~~~~~~~g~~~~----a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~-~~~~~l~~ 509 (600)
..+...+...|++++ |...++++.+. .| +...+..++..+.+.|++++|...+++.. ..|+. ..+..+..
T Consensus 250 ~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l---~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~ 326 (656)
T PRK15174 250 RSLGLAYYQSGRSREAKLQAAEHWRHALQF---NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYAR 326 (656)
T ss_pred HHHHHHHHHcCCchhhHHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 778888999999986 89999999864 66 57789999999999999999999998875 56654 45666666
Q ss_pred HHhhhhCCHHHHHHHHHHHHhhCCCCCCcHHHHhHHHHhhCCcHHHHHHHHHHhhcCC
Q 007519 510 ACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGV 567 (600)
Q Consensus 510 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 567 (600)
.+. ..|++++|+..++++.+..|+++..+..++.++...|++++|...++...+...
T Consensus 327 ~l~-~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P 383 (656)
T PRK15174 327 ALR-QVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARA 383 (656)
T ss_pred HHH-HCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCh
Confidence 777 999999999999999999997777677788899999999999998777655443
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=9.7e-17 Score=169.85 Aligned_cols=381 Identities=10% Similarity=0.027 Sum_probs=227.8
Q ss_pred HHHHhcCChhHHHHHHccCCC---CCcchHHHHHHHHHhcCChhHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHhcCC
Q 007519 174 SGYCRAGEVEEGYCLFRRMPR---KNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGR 250 (600)
Q Consensus 174 ~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 250 (600)
......|+.++|++++.+... .+...+..+...+...|++++|..++++..+. .+.+...+..+...+...|+
T Consensus 23 ~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~----~P~~~~a~~~la~~l~~~g~ 98 (765)
T PRK10049 23 QIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSL----EPQNDDYQRGLILTLADAGQ 98 (765)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHCCC
Confidence 334444444444444444432 11122444444444445555555555444432 11122333344444444455
Q ss_pred hhhHHHHhcccC---CCCchhHHHHHHHHHhcCChHHHHHHHhhCCC--C-ChhhHHHHHHHHHhCCChhHHHHHHHHHH
Q 007519 251 LEEAQNLFDTVP---VRDEISWTSMIDGYLSVGQVSNAYYLFHNMPD--R-DAVAWTAMISGLVQNELFVEATYLFMEMR 324 (600)
Q Consensus 251 ~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 324 (600)
+++|...++++. +.+.. +..+..++...|+.++|+..++++.. | +...+..+...+...|..+.|+..++...
T Consensus 99 ~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~ 177 (765)
T PRK10049 99 YDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDAN 177 (765)
T ss_pred HHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCC
Confidence 555554444443 22233 44444444455555555555544433 2 22333444445555555555555554433
Q ss_pred HCCCCCCh------hHHHHHHHHH-----hcccch---hhhHHHHHHHhhh-cCCCchh-HH-HH---HHHHHHhcCChH
Q 007519 325 AHGVPPLN------ATFSVLFGAA-----GATANI---DLGRQIHCVLMKT-ESESDLI-LE-NC---LISMYAKCGVID 384 (600)
Q Consensus 325 ~~g~~p~~------~~~~~l~~~~-----~~~~~~---~~a~~~~~~~~~~-~~~~~~~-~~-~~---l~~~~~~~~~~~ 384 (600)
. .|+. .....++... ...+.+ +.|...++.+.+. ...|+.. .+ .. .+.++...|+++
T Consensus 178 ~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~ 254 (765)
T PRK10049 178 L---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYK 254 (765)
T ss_pred C---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHH
Confidence 2 1221 0011111111 111223 5677777766654 2233221 11 11 123446779999
Q ss_pred HHHHHHhcCCCCC---hh-hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-----hhHHHHHHHHhcccCchHHHHHH
Q 007519 385 NAYNIFSNMVSRD---LV-SWNSMVMGFSHHGLANETLKVFESMLESGTHPN-----SVTFLGILSACSHAGLVSRGWEL 455 (600)
Q Consensus 385 ~A~~~~~~~~~~~---~~-~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-----~~~~~~l~~~~~~~g~~~~a~~~ 455 (600)
+|+..|+.+...+ +. .-..+..++...|++++|+.+|+++... .|. ......+..++...|++++|.++
T Consensus 255 eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~--~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~ 332 (765)
T PRK10049 255 DVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYH--PETIADLSDEELADLFYSLLESENYPGALTV 332 (765)
T ss_pred HHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhc--CCCCCCCChHHHHHHHHHHHhcccHHHHHHH
Confidence 9999999987322 11 2222577899999999999999998764 332 23455666778999999999999
Q ss_pred HHHHHhhcC----------CCCC---cchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHhhhhCCHHH
Q 007519 456 FNAMFDVYK----------IQPG---PEHYVSMINLLGRAGKIKEAEEFVLRLP-FEP-DHRIWGALLGACGFCEGNAEI 520 (600)
Q Consensus 456 ~~~~~~~~~----------~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~g~~~~ 520 (600)
++.+..... -.|+ ...+..++.++...|+.++|++.++++. ..| +...+..+...+. ..|+.++
T Consensus 333 l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~-~~g~~~~ 411 (765)
T PRK10049 333 TAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQ-ARGWPRA 411 (765)
T ss_pred HHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-hcCCHHH
Confidence 999986421 1122 2245677889999999999999999975 445 4566777777777 9999999
Q ss_pred HHHHHHHHHhhCCCCCCcHHHHhHHHHhhCCcHHHHHHHHHHhhc
Q 007519 521 AEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLK 565 (600)
Q Consensus 521 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 565 (600)
|+..++++++++|+++..+..++.++...|++++|..+++.+.+.
T Consensus 412 A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 412 AENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred HHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999988777654
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.2e-17 Score=151.21 Aligned_cols=205 Identities=12% Similarity=0.113 Sum_probs=166.9
Q ss_pred hcccchhhhHHHHHHHhhhcCCCchhHHHHHHHHHHhcCChHHHHHHHhcCC---CCChhhHHHHHHHHHhcCChHHHHH
Q 007519 343 GATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMV---SRDLVSWNSMVMGFSHHGLANETLK 419 (600)
Q Consensus 343 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~ 419 (600)
...|++++|...+++.....-......|| +.-.+...|++++|++.|-++. ..+..+...+...|-...+..+|++
T Consensus 501 f~ngd~dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie 579 (840)
T KOG2003|consen 501 FANGDLDKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIE 579 (840)
T ss_pred eecCcHHHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHH
Confidence 34566666766666666554333333443 3334667899999999987765 6677888888899999999999999
Q ss_pred HHHHHHHcCCCCChhHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhCC-C
Q 007519 420 VFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQP-GPEHYVSMINLLGRAGKIKEAEEFVLRLP-F 497 (600)
Q Consensus 420 ~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~ 497 (600)
++.+.... ++.++..+.-|...|-+.|+-..|.+++-.-- ..-| +..+...|...|....-+++|..+|++.. +
T Consensus 580 ~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsy---ryfp~nie~iewl~ayyidtqf~ekai~y~ekaali 655 (840)
T KOG2003|consen 580 LLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSY---RYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALI 655 (840)
T ss_pred HHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcc---cccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhc
Confidence 99888764 55567788888999999999999988765443 3445 78999999999999999999999999975 8
Q ss_pred CCCHHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCCcHHHHhHHHHhhCCc
Q 007519 498 EPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRH 552 (600)
Q Consensus 498 ~p~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 552 (600)
.|+..-|..++.+|..+.|++..|+.+|+......|.+...+.-|.+.+...|..
T Consensus 656 qp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl~ 710 (840)
T KOG2003|consen 656 QPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGLK 710 (840)
T ss_pred CccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccch
Confidence 9999999999999877899999999999999999999999999999999888753
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.8e-15 Score=156.97 Aligned_cols=430 Identities=12% Similarity=0.048 Sum_probs=296.8
Q ss_pred HHHHHHHHHcCCChhHHHHHhhhcCC--CChh-hHHHHHHHHHhcCChHHHHHHhhcCCCCCcee-HHHH--HHHHHHCC
Q 007519 45 YNAMLSGFLQNGRLSEARRLFEEMPE--RNVV-SWTAMICGLADAGRVCEARKLFEEMPERNVVS-WNSM--VVGLIRNG 118 (600)
Q Consensus 45 ~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~l--~~~~~~~~ 118 (600)
|...+. ..+.|++..|+..|++..+ |+.. ....++..+...|+.++|+..+++...|+... +..+ +..+...|
T Consensus 38 y~~aii-~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~g 116 (822)
T PRK14574 38 YDSLII-RARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEK 116 (822)
T ss_pred HHHHHH-HHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcC
Confidence 444444 4599999999999999997 4421 23388888999999999999999999864443 3444 55788889
Q ss_pred ChhHHHHHhhcCCC---CCcccHHHHHHHHHhcCCHhHHHHHHHhccc--CCchhHHHHHHHHHhcCChhHHHHHHccCC
Q 007519 119 ELNEARKVFNSMPI---KNVISWNAMIAGYVECCMMGEAIVLFEEMEE--RNVVTWTSMISGYCRAGEVEEGYCLFRRMP 193 (600)
Q Consensus 119 ~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 193 (600)
++++|+++|+++.+ .++..+..++..+...++.++|.+.++.+.+ |+...+..++..+...++..+|++.++++.
T Consensus 117 dyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll 196 (822)
T PRK14574 117 RWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAV 196 (822)
T ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 99999999999987 3456677778889999999999999999985 444444444444444666666999999987
Q ss_pred C--C-CcchHHHHHHHHHhcCChhHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHhcCChhhHHHHhcccCCC--Cc-h
Q 007519 194 R--K-NVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVR--DE-I 267 (600)
Q Consensus 194 ~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~-~ 267 (600)
+ | +...+..++.++.+.|-...|+++..+-... +.+. ....+ +.+.+.+..+....+ +. .
T Consensus 197 ~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~----f~~~--~~~~l--------~~~~~a~~vr~a~~~~~~~~~ 262 (822)
T PRK14574 197 RLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNL----VSAE--HYRQL--------ERDAAAEQVRMAVLPTRSETE 262 (822)
T ss_pred HhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc----cCHH--HHHHH--------HHHHHHHHHhhcccccccchh
Confidence 5 4 4567788889999999999999876654322 1221 11111 111122222111100 00 0
Q ss_pred hHHHHHHHHHhcCChHHHHHHHhhCC----C-CCh-h----hHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHH
Q 007519 268 SWTSMIDGYLSVGQVSNAYYLFHNMP----D-RDA-V----AWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSV 337 (600)
Q Consensus 268 ~~~~l~~~~~~~~~~~~A~~~~~~~~----~-~~~-~----~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ 337 (600)
-+. -.+.|+.-++.+. . |.. . ..--.+.++...|+..++++.|+.+...|.+....+-..
T Consensus 263 r~~----------~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a 332 (822)
T PRK14574 263 RFD----------IADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRW 332 (822)
T ss_pred hHH----------HHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHH
Confidence 000 1122222222221 1 211 1 112234466778888888888888888776655667778
Q ss_pred HHHHHhcccchhhhHHHHHHHhhhcC-----CCchhHHHHHHHHHHhcCChHHHHHHHhcCCC--C-------------C
Q 007519 338 LFGAAGATANIDLGRQIHCVLMKTES-----ESDLILENCLISMYAKCGVIDNAYNIFSNMVS--R-------------D 397 (600)
Q Consensus 338 l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-------------~ 397 (600)
+..+|...+.+++|..++..+..... .++......|..+|...+++++|..+++++.. | |
T Consensus 333 ~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn 412 (822)
T PRK14574 333 AASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPN 412 (822)
T ss_pred HHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCC
Confidence 88888888888888888887755431 22333356788888888888888888887752 1 1
Q ss_pred h---hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCC-CcchHH
Q 007519 398 L---VSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQP-GPEHYV 473 (600)
Q Consensus 398 ~---~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~ 473 (600)
. ..+..++..+...|+..+|++.++++.... +-|......+...+...|.+.+|.+.++.+. .+.| +..+..
T Consensus 413 ~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~---~l~P~~~~~~~ 488 (822)
T PRK14574 413 DDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVE---SLAPRSLILER 488 (822)
T ss_pred ccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh---hhCCccHHHHH
Confidence 1 234456777889999999999999998753 5566777788889999999999999997766 3477 467777
Q ss_pred HHHHHHhhcCChHHHHHHHHhCC-CCCCHHH
Q 007519 474 SMINLLGRAGKIKEAEEFVLRLP-FEPDHRI 503 (600)
Q Consensus 474 ~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~ 503 (600)
..+..+...|++++|..+.+.+. ..|+...
T Consensus 489 ~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~ 519 (822)
T PRK14574 489 AQAETAMALQEWHQMELLTDDVISRSPEDIP 519 (822)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHhhCCCchh
Confidence 88999999999999999987764 4454443
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.5e-15 Score=148.11 Aligned_cols=541 Identities=12% Similarity=0.082 Sum_probs=360.4
Q ss_pred CCCCccchhHHHHHHHhcCChhhHHHHhccCCC---CCcchHHHHHHHHHcCCChhHHHHHhhhcC---CCChhhHHHHH
Q 007519 7 PKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQ---RNVVSYNAMLSGFLQNGRLSEARRLFEEMP---ERNVVSWTAMI 80 (600)
Q Consensus 7 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~ 80 (600)
++|.+..+-..+..+...|+.++|.+++.++.+ .+..+|.+|...|-++|+.+++...+-.+- ..|...|..+.
T Consensus 135 l~~~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~la 214 (895)
T KOG2076|consen 135 LAPELRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLA 214 (895)
T ss_pred cCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHH
Confidence 444455566666677777999999999999886 456789999999999999999987765443 35668999999
Q ss_pred HHHHhcCChHHHHHHhhcCCCC---CceeHHHHHHHHHHCCChhHHHHHhhcCCCCCc----c----cHHHHHHHHHhcC
Q 007519 81 CGLADAGRVCEARKLFEEMPER---NVVSWNSMVVGLIRNGELNEARKVFNSMPIKNV----I----SWNAMIAGYVECC 149 (600)
Q Consensus 81 ~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~----~~~~l~~~~~~~~ 149 (600)
....+.|++++|.-.|.++.+. |...+-.-+..|-+.|+...|..-|.++...++ . .-...+..+...+
T Consensus 215 dls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~ 294 (895)
T KOG2076|consen 215 DLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHN 294 (895)
T ss_pred HHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999873 333444557788899999999999998876222 2 2233456677788
Q ss_pred CHhHHHHHHHhccc-----CCchhHHHHHHHHHhcCChhHHHHHHccCCC--------------------------CCcc
Q 007519 150 MMGEAIVLFEEMEE-----RNVVTWTSMISGYCRAGEVEEGYCLFRRMPR--------------------------KNVV 198 (600)
Q Consensus 150 ~~~~A~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------------------------~~~~ 198 (600)
+.+.|.+.++.... .+...++.++..|.+...++.|......... ++..
T Consensus 295 ~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~ 374 (895)
T KOG2076|consen 295 ERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKEL 374 (895)
T ss_pred HHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCC
Confidence 88999999887763 3456677888888888888888776654432 1111
Q ss_pred hHH----HHHHHHHhcCChhHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHhcCChhhHHHHhcccCC----CCchhHH
Q 007519 199 SWT----AMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPV----RDEISWT 270 (600)
Q Consensus 199 ~~~----~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~ 270 (600)
+|. .++-++......+....+..-.... ...+.-+...|.-+..++...|++.+|+.+|..+.. .+..+|-
T Consensus 375 s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~-n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~ 453 (895)
T KOG2076|consen 375 SYDLRVIRLMICLVHLKERELLEALLHFLVED-NVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWY 453 (895)
T ss_pred CccchhHhHhhhhhcccccchHHHHHHHHHHh-cCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhH
Confidence 121 2233334444444444444444433 112334567888999999999999999999999872 3566899
Q ss_pred HHHHHHHhcCChHHHHHHHhhCCC--C-ChhhHHHHHHHHHhCCChhHHHHHHHHHH--------HCCCCCChhHHHHHH
Q 007519 271 SMIDGYLSVGQVSNAYYLFHNMPD--R-DAVAWTAMISGLVQNELFVEATYLFMEMR--------AHGVPPLNATFSVLF 339 (600)
Q Consensus 271 ~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~--------~~g~~p~~~~~~~l~ 339 (600)
.+..+|...|..++|.+.|..+.. | +...--.|...+.+.|++++|++.++.+. ..+..|+........
T Consensus 454 ~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~ 533 (895)
T KOG2076|consen 454 KLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRC 533 (895)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHH
Confidence 999999999999999999998866 3 34455667778899999999999999854 223445555555555
Q ss_pred HHHhcccchhhhHHHHHHHhhhc----------------------CCCchhHHHHHHHHHHhcCChHHHHHHHhcC----
Q 007519 340 GAAGATANIDLGRQIHCVLMKTE----------------------SESDLILENCLISMYAKCGVIDNAYNIFSNM---- 393 (600)
Q Consensus 340 ~~~~~~~~~~~a~~~~~~~~~~~----------------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~---- 393 (600)
..+...|+.++-..+...+.... .+........++.+-.+.++......-...-
T Consensus 534 d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~ 613 (895)
T KOG2076|consen 534 DILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFR 613 (895)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhh
Confidence 66777777665443333222211 1111112222333333333322221111111
Q ss_pred ----CCCCh----hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC--CCh-h-HH-HHHHHHhcccCchHHHHHHHHHHH
Q 007519 394 ----VSRDL----VSWNSMVMGFSHHGLANETLKVFESMLESGTH--PNS-V-TF-LGILSACSHAGLVSRGWELFNAMF 460 (600)
Q Consensus 394 ----~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~--p~~-~-~~-~~l~~~~~~~g~~~~a~~~~~~~~ 460 (600)
..-+. ..+.-++.++++.+++++|+.+...+.....- ++. . .+ ...+.++...+++..|...++.+.
T Consensus 614 ~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i 693 (895)
T KOG2076|consen 614 AVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVI 693 (895)
T ss_pred hhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 01112 23455677899999999999999988775322 222 1 22 334567788999999999999998
Q ss_pred hhcCCCCC---cchHHHHHHHHhhcCChHHHHHHHHhC-CCCCCH-HHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCC
Q 007519 461 DVYKIQPG---PEHYVSMINLLGRAGKIKEAEEFVLRL-PFEPDH-RIWGALLGACGFCEGNAEIAEHAAKRLLELDPLN 535 (600)
Q Consensus 461 ~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~ 535 (600)
..++...+ ...|+.......+.|+-.-=.+++..+ ..+|+. .....+.+...+..+.+..|+..+-++....|++
T Consensus 694 ~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~pd~ 773 (895)
T KOG2076|consen 694 TQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQNPDS 773 (895)
T ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHhCCCC
Confidence 76444332 445665555555666544444444443 233433 2222222223337789999999999999999999
Q ss_pred CCcHHHHhHHHHh
Q 007519 536 APAHVVLCNIYAA 548 (600)
Q Consensus 536 ~~~~~~l~~~~~~ 548 (600)
|.+-..++.++..
T Consensus 774 Pl~nl~lglafih 786 (895)
T KOG2076|consen 774 PLINLCLGLAFIH 786 (895)
T ss_pred cHHHHHHHHHHHH
Confidence 9988888887754
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.5e-14 Score=134.16 Aligned_cols=457 Identities=13% Similarity=0.089 Sum_probs=334.0
Q ss_pred HHHCCChhHHHHHhhcCCC---CCcccHHHHHHHHHhcCCHhHHHHHHHhcc--------cCCchhHHHHHHHHHhcCCh
Q 007519 114 LIRNGELNEARKVFNSMPI---KNVISWNAMIAGYVECCMMGEAIVLFEEME--------ERNVVTWTSMISGYCRAGEV 182 (600)
Q Consensus 114 ~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--------~~~~~~~~~l~~~~~~~g~~ 182 (600)
+.+..-++.|.+++++..+ .+...|.+-...--..|..+...+++++.. +-+...|..=...|-+.|..
T Consensus 416 larLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv 495 (913)
T KOG0495|consen 416 LARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSV 495 (913)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCCh
Confidence 3444556666666666554 345555555555556666666666665543 12333344444444444554
Q ss_pred hHHHHHHccCCC------CCcchHHHHHHHHHhcCChhHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHhcCChhhHHH
Q 007519 183 EEGYCLFRRMPR------KNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQN 256 (600)
Q Consensus 183 ~~A~~~~~~~~~------~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 256 (600)
-.+..+...... .-..+|..-...|.+.+.++-|..+|...++. ++.+...|......--..|..+.-..
T Consensus 496 ~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv----fp~k~slWlra~~~ek~hgt~Esl~A 571 (913)
T KOG0495|consen 496 ITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV----FPCKKSLWLRAAMFEKSHGTRESLEA 571 (913)
T ss_pred hhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh----ccchhHHHHHHHHHHHhcCcHHHHHH
Confidence 444444443331 12346777778888888889999999888864 34455666666666666788888888
Q ss_pred HhcccC---CCCchhHHHHHHHHHhcCChHHHHHHHhhCCC---CChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC
Q 007519 257 LFDTVP---VRDEISWTSMIDGYLSVGQVSNAYYLFHNMPD---RDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPP 330 (600)
Q Consensus 257 ~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 330 (600)
++.+.. +.....|-.....+-..|++..|..++....+ .+...|-..+..-..+.++++|..+|.+.... .|
T Consensus 572 llqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~--sg 649 (913)
T KOG0495|consen 572 LLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSI--SG 649 (913)
T ss_pred HHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CC
Confidence 888876 44555666667778888999999998887655 35567888888888999999999999988774 67
Q ss_pred ChhHHHHHHHHHhcccchhhhHHHHHHHhhhcCCCchhHHHHHHHHHHhcCChHHHHHHHhcCC---CCChhhHHHHHHH
Q 007519 331 LNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMV---SRDLVSWNSMVMG 407 (600)
Q Consensus 331 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~ 407 (600)
+...|..-+..---.++.++|.+++++..+. ++.-...|..+.+.+...++++.|...|..-. +..+..|-.+...
T Consensus 650 TeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakl 728 (913)
T KOG0495|consen 650 TERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKL 728 (913)
T ss_pred cchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHH
Confidence 7777766666666788899999999877765 33345678888899999999999999998776 4456678888888
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCCCcchHHHHHHHHhhcCChHH
Q 007519 408 FSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKE 487 (600)
Q Consensus 408 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 487 (600)
--+.|..-.|..+|++..-.+ +-+...|...++.-.+.|+.+.|..+..++.+. ++.+-..|..-|.+..+.++-..
T Consensus 729 eEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe--cp~sg~LWaEaI~le~~~~rkTk 805 (913)
T KOG0495|consen 729 EEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQE--CPSSGLLWAEAIWLEPRPQRKTK 805 (913)
T ss_pred HHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccchhHHHHHHhccCcccchH
Confidence 888899999999999988764 556778888999999999999999999988874 44467788888888888888888
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCCcHHHHhHHHHhhCCcHHHHHHHHHHhhcCC
Q 007519 488 AEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGV 567 (600)
Q Consensus 488 A~~~~~~~~~~p~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 567 (600)
....+++... |+.++..+...+- ....++.|..-|.++++.+|++..++..+...+.+.|.-++-.++++.....
T Consensus 806 s~DALkkce~--dphVllaia~lfw-~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~-- 880 (913)
T KOG0495|consen 806 SIDALKKCEH--DPHVLLAIAKLFW-SEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETA-- 880 (913)
T ss_pred HHHHHHhccC--CchhHHHHHHHHH-HHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhcc--
Confidence 8888877764 4444445555554 7889999999999999999999999999999999999888877788655432
Q ss_pred ccCCCcceEEECCeEEEE
Q 007519 568 RKVPGCSWLMRNGGIQMF 585 (600)
Q Consensus 568 ~~~~~~~~~~~~~~~~~~ 585 (600)
.|.-|..|+-+++.+.++
T Consensus 881 EP~hG~~W~avSK~i~n~ 898 (913)
T KOG0495|consen 881 EPTHGELWQAVSKDIKNW 898 (913)
T ss_pred CCCCCcHHHHHhhhHHhc
Confidence 244467787776665543
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.9e-15 Score=137.22 Aligned_cols=270 Identities=12% Similarity=0.132 Sum_probs=140.6
Q ss_pred HHhcCChhHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHhcCChhhHHHHhcccCCC---CchhHHHHHHHHHhcCChH
Q 007519 207 FAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVR---DEISWTSMIDGYLSVGQVS 283 (600)
Q Consensus 207 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~ 283 (600)
+.++|+++.|+++++-..+. ++....-..+-.+.+..+.--.++..|.++-+..... ++...+.-.+.....|+++
T Consensus 429 ~lk~~d~~~aieilkv~~~k-dnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~d 507 (840)
T KOG2003|consen 429 LLKNGDIEGAIEILKVFEKK-DNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLD 507 (840)
T ss_pred HHhccCHHHHHHHHHHHHhc-cchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHH
Confidence 55666666666666666543 1111111111112222222233455555554444322 2222222222333456666
Q ss_pred HHHHHHhhCCCCChhhHHHHH---HHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhcccchhhhHHHHHHHhh
Q 007519 284 NAYYLFHNMPDRDAVAWTAMI---SGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMK 360 (600)
Q Consensus 284 ~A~~~~~~~~~~~~~~~~~li---~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 360 (600)
+|...|.+....|...-.+|. -.+-..|+.++|++.|-++... +..+...+..+...|....+..+|.+++.....
T Consensus 508 ka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~s 586 (840)
T KOG2003|consen 508 KAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANS 586 (840)
T ss_pred HHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcc
Confidence 666666666554443222222 2345566666666666555432 233444555555666666666666665554433
Q ss_pred hcCCCchhHHHHHHHHHHhcCChHHHHHHHhcCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHH
Q 007519 361 TESESDLILENCLISMYAKCGVIDNAYNIFSNMV---SRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFL 437 (600)
Q Consensus 361 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~ 437 (600)
. ++.|+.+.+-|.+.|-+.|+-..|.+.+-+-- +-+..+..=|...|....-+++++.+|++..- +.|+..-|.
T Consensus 587 l-ip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwq 663 (840)
T KOG2003|consen 587 L-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQ 663 (840)
T ss_pred c-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHH
Confidence 2 33456666666666666666666666543322 44555555555556666666666666666543 566666666
Q ss_pred HHHHHh-cccCchHHHHHHHHHHHhhcCCCCCcchHHHHHHHHhhcC
Q 007519 438 GILSAC-SHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAG 483 (600)
Q Consensus 438 ~l~~~~-~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 483 (600)
.++..| .+.|++++|.++++...+ .++-+..++.-|++.+...|
T Consensus 664 lmiasc~rrsgnyqka~d~yk~~hr--kfpedldclkflvri~~dlg 708 (840)
T KOG2003|consen 664 LMIASCFRRSGNYQKAFDLYKDIHR--KFPEDLDCLKFLVRIAGDLG 708 (840)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHH--hCccchHHHHHHHHHhcccc
Confidence 665333 456667777766666654 33335666666666665555
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.70 E-value=6.5e-13 Score=126.43 Aligned_cols=451 Identities=13% Similarity=0.101 Sum_probs=362.3
Q ss_pred HHHHHHhcCChHHHHHHhhcCCC---CCceeHHHHHHHHHHCCChhHHHHHhhcCCC--------CCcccHHHHHHHHHh
Q 007519 79 MICGLADAGRVCEARKLFEEMPE---RNVVSWNSMVVGLIRNGELNEARKVFNSMPI--------KNVISWNAMIAGYVE 147 (600)
Q Consensus 79 l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--------~~~~~~~~l~~~~~~ 147 (600)
|.-+|.+..-|+.|.+++.+..+ .+..+|..-...--.+|+.+...+++.+... .+...|..=...|-.
T Consensus 412 LwlAlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~ 491 (913)
T KOG0495|consen 412 LWLALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACED 491 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhh
Confidence 44466777888999999888776 5788899888888999999999998887643 455566666677777
Q ss_pred cCCHhHHHHHHHhccc------CCchhHHHHHHHHHhcCChhHHHHHHccCCC---CCcchHHHHHHHHHhcCChhHHHH
Q 007519 148 CCMMGEAIVLFEEMEE------RNVVTWTSMISGYCRAGEVEEGYCLFRRMPR---KNVVSWTAMIGGFAWNGFHKESLL 218 (600)
Q Consensus 148 ~~~~~~A~~~~~~~~~------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~ 218 (600)
.|.+-.+..+...... .-..+|..-...|.+.+.++-|..+|....+ .+...|...+..--..|..+....
T Consensus 492 agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~A 571 (913)
T KOG0495|consen 492 AGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEA 571 (913)
T ss_pred cCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHH
Confidence 7888877777776652 3346888888999999999999999988776 355678877777778899999999
Q ss_pred HHHHHHhhhcCCCCCChhhHHHHHHHHHhcCChhhHHHHhcccC---CCCchhHHHHHHHHHhcCChHHHHHHHhhCCC-
Q 007519 219 LFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVP---VRDEISWTSMIDGYLSVGQVSNAYYLFHNMPD- 294 (600)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~- 294 (600)
+|++.... .+-....+....+.+-..|+...|..++..+. +.+..+|-.-+.......+++.|..+|.+...
T Consensus 572 llqkav~~----~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~ 647 (913)
T KOG0495|consen 572 LLQKAVEQ----CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSI 647 (913)
T ss_pred HHHHHHHh----CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc
Confidence 99999975 33344556666677788899999999998876 55777899999999999999999999998765
Q ss_pred -CChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhcccchhhhHHHHHHHhhhcCCCchhHHHH
Q 007519 295 -RDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLN-ATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENC 372 (600)
Q Consensus 295 -~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 372 (600)
++...|..-+..-.-.++.++|++++++.++. -|+- ..|..+...+.+.++++.|...|..-.+. .+..+..|-.
T Consensus 648 sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWll 724 (913)
T KOG0495|consen 648 SGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLL 724 (913)
T ss_pred CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHH
Confidence 67778877777777889999999999998885 5554 45666666888899999998888754332 3446778888
Q ss_pred HHHHHHhcCChHHHHHHHhcCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccCch
Q 007519 373 LISMYAKCGVIDNAYNIFSNMV---SRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLV 449 (600)
Q Consensus 373 l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~ 449 (600)
|...--+.|.+-+|+.++++.. +.+...|-..|..-.+.|+.+.|..+..+..+. ++.+...|..-|....+.++-
T Consensus 725 LakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rk 803 (913)
T KOG0495|consen 725 LAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRK 803 (913)
T ss_pred HHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCcccc
Confidence 8888889999999999999886 567889999999999999999999999888875 666777888888777777776
Q ss_pred HHHHHHHHHHHhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhCC-CCCCH-HHHHHHHHHHhhhhCCHHHHHHHHHH
Q 007519 450 SRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLP-FEPDH-RIWGALLGACGFCEGNAEIAEHAAKR 527 (600)
Q Consensus 450 ~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~-~~~~~l~~~~~~~~g~~~~a~~~~~~ 527 (600)
..+...+++ +.-|+.+...++..+....++++|.+.|.+.. ..||. .+|..+..... ..|.-++-.+++.+
T Consensus 804 Tks~DALkk------ce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel-~hG~eed~kev~~~ 876 (913)
T KOG0495|consen 804 TKSIDALKK------CEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFEL-RHGTEEDQKEVLKK 876 (913)
T ss_pred hHHHHHHHh------ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHH-HhCCHHHHHHHHHH
Confidence 666665553 35577889999999999999999999999875 66765 47777777777 99999999999999
Q ss_pred HHhhCCCCCCcHHHHhH
Q 007519 528 LLELDPLNAPAHVVLCN 544 (600)
Q Consensus 528 ~~~~~p~~~~~~~~l~~ 544 (600)
...-+|.+...+..+..
T Consensus 877 c~~~EP~hG~~W~avSK 893 (913)
T KOG0495|consen 877 CETAEPTHGELWQAVSK 893 (913)
T ss_pred HhccCCCCCcHHHHHhh
Confidence 99999976666665544
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.68 E-value=7.9e-13 Score=121.15 Aligned_cols=454 Identities=15% Similarity=0.109 Sum_probs=318.3
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHhhcCCC---CCceeHHHHHHHHHHCCChhHHHHHhhcCCC--CCc-ccHHHHHHHH
Q 007519 72 NVVSWTAMICGLADAGRVCEARKLFEEMPE---RNVVSWNSMVVGLIRNGELNEARKVFNSMPI--KNV-ISWNAMIAGY 145 (600)
Q Consensus 72 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~-~~~~~l~~~~ 145 (600)
+...|-...+--..++++..|..+|++.+. .+...|.-.+.+-.++..+..|..++++... |.+ ..+.-.+-.-
T Consensus 72 ~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymE 151 (677)
T KOG1915|consen 72 NMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYME 151 (677)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 334455555555567888888888888876 5666788888888888888888888888776 433 2334444444
Q ss_pred HhcCCHhHHHHHHHhcc--cCCchhHHHHHHHHHhcCChhHHHHHHccCC--CCCcchHHHHHHHHHhcCChhHHHHHHH
Q 007519 146 VECCMMGEAIVLFEEME--ERNVVTWTSMISGYCRAGEVEEGYCLFRRMP--RKNVVSWTAMIGGFAWNGFHKESLLLFI 221 (600)
Q Consensus 146 ~~~~~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~ 221 (600)
-..|++..|.++|+... +|+..+|.+.|..-.+.+.++.|..++++.. .|++.+|......-.+.|....+..+|+
T Consensus 152 E~LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~Vye 231 (677)
T KOG1915|consen 152 EMLGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYE 231 (677)
T ss_pred HHhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 56788888999888766 5888889998888888888899998888765 5888888888888888888888888888
Q ss_pred HHHhhhcCCC-CCChhhHHHHHHHHHhcCChhhHHHHhcccC---CCC--chhHHHHHHHHHhcCChHHHHHHH------
Q 007519 222 EMKGICDNGN-NCNVQSCNSMINGYIRFGRLEEAQNLFDTVP---VRD--EISWTSMIDGYLSVGQVSNAYYLF------ 289 (600)
Q Consensus 222 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~--~~~~~~l~~~~~~~~~~~~A~~~~------ 289 (600)
...+.+ |. ..+...+++....-.++..++.|.-+|+-.. +.+ ...|..+...--+-|+.....+..
T Consensus 232 rAie~~--~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~ 309 (677)
T KOG1915|consen 232 RAIEFL--GDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKF 309 (677)
T ss_pred HHHHHh--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhh
Confidence 887652 11 1122334444444445677888888877665 222 334444444444455544333322
Q ss_pred --hhCCC---CChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChh-------HHHHHHHHH---hcccchhhhHHH
Q 007519 290 --HNMPD---RDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNA-------TFSVLFGAA---GATANIDLGRQI 354 (600)
Q Consensus 290 --~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-------~~~~l~~~~---~~~~~~~~a~~~ 354 (600)
+...+ -|..+|--.+..-...|+.+...++|++.... ++|-.. .|..+=-+| ....+++.+.++
T Consensus 310 qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~v 388 (677)
T KOG1915|consen 310 QYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQV 388 (677)
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 22222 25567777777777889999999999998875 566322 222221222 356788899999
Q ss_pred HHHHhhhcCCCchhHHHHH----HHHHHhcCChHHHHHHHhcCC--CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 007519 355 HCVLMKTESESDLILENCL----ISMYAKCGVIDNAYNIFSNMV--SRDLVSWNSMVMGFSHHGLANETLKVFESMLESG 428 (600)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~l----~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 428 (600)
++...+ -++....++.-+ ...-.++.++..|.+++...+ -|...+|...|..-.+.++++.+..++++..+-+
T Consensus 389 yq~~l~-lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~ 467 (677)
T KOG1915|consen 389 YQACLD-LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS 467 (677)
T ss_pred HHHHHh-hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 998877 334444444433 344467899999999999887 6788889999999999999999999999999864
Q ss_pred CCCChhHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhCC-CCCCHHHHHHH
Q 007519 429 THPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLP-FEPDHRIWGAL 507 (600)
Q Consensus 429 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l 507 (600)
+-+..+|......-...|+.+.|..+|..+.....+......|-+.|..=...|.++.|..+++++. ..+...+|-++
T Consensus 468 -Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~kvWisF 546 (677)
T KOG1915|consen 468 -PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVKVWISF 546 (677)
T ss_pred -hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccchHHHhH
Confidence 4566788777777788899999999999998753333345566777777789999999999999875 44455566655
Q ss_pred HHHHh----hhhC-----------CHHHHHHHHHHHHh
Q 007519 508 LGACG----FCEG-----------NAEIAEHAAKRLLE 530 (600)
Q Consensus 508 ~~~~~----~~~g-----------~~~~a~~~~~~~~~ 530 (600)
...-. ...+ +...|..+|+++..
T Consensus 547 A~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~ 584 (677)
T KOG1915|consen 547 AKFEASASEGQEDEDLAELEITDENIKRARKIFERANT 584 (677)
T ss_pred HHHhccccccccccchhhhhcchhHHHHHHHHHHHHHH
Confidence 44211 0223 45678888888876
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.6e-12 Score=128.71 Aligned_cols=514 Identities=12% Similarity=0.103 Sum_probs=326.9
Q ss_pred HHHHHHHHHcCCChhHHHHHhhhcCC---CChhhHHHHHHHHHhcCChHHHHHHhhcCC--C-CCceeHHHHHHHHHHCC
Q 007519 45 YNAMLSGFLQNGRLSEARRLFEEMPE---RNVVSWTAMICGLADAGRVCEARKLFEEMP--E-RNVVSWNSMVVGLIRNG 118 (600)
Q Consensus 45 ~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~-~~~~~~~~l~~~~~~~~ 118 (600)
.-..++.+...|++++|.+++.++.+ .+...|.+|...|-..|+.+++...+=.+- . .|...|-.+.....+.|
T Consensus 142 ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~ 221 (895)
T KOG2076|consen 142 LLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLG 221 (895)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcc
Confidence 33444555666999999999999986 355789999999999999999988654332 2 56678999999999999
Q ss_pred ChhHHHHHhhcCCCC---CcccHHHHHHHHHhcCCHhHHHHHHHhcccCCc--------hhHHHHHHHHHhcCChhHHHH
Q 007519 119 ELNEARKVFNSMPIK---NVISWNAMIAGYVECCMMGEAIVLFEEMEERNV--------VTWTSMISGYCRAGEVEEGYC 187 (600)
Q Consensus 119 ~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--------~~~~~l~~~~~~~g~~~~A~~ 187 (600)
.++.|.-.|.+..+. +...+.--+..|-+.|+...|...|.++.+.++ ..--..+..+...++-+.|.+
T Consensus 222 ~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~ 301 (895)
T KOG2076|consen 222 NINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAK 301 (895)
T ss_pred cHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 999999999999873 334444556778899999999999998885333 122234556677777788888
Q ss_pred HHccCCC-----CCcchHHHHHHHHHhcCChhHHHHHHHHHHhh----------------------h--cCCCCCChhhH
Q 007519 188 LFRRMPR-----KNVVSWTAMIGGFAWNGFHKESLLLFIEMKGI----------------------C--DNGNNCNVQSC 238 (600)
Q Consensus 188 ~~~~~~~-----~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----------------------~--~~~~~~~~~~~ 238 (600)
.++.... -+...++.++..+.+...++.|......+... + ..+..++...+
T Consensus 302 ~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~ 381 (895)
T KOG2076|consen 302 ALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVI 381 (895)
T ss_pred HHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhH
Confidence 8877654 24457888999999999999999988888761 1 11222333331
Q ss_pred HHHHHHHHhc--CChhhHHHHhcccC----CCCchhHHHHHHHHHhcCChHHHHHHHhhCCC----CChhhHHHHHHHHH
Q 007519 239 NSMINGYIRF--GRLEEAQNLFDTVP----VRDEISWTSMIDGYLSVGQVSNAYYLFHNMPD----RDAVAWTAMISGLV 308 (600)
Q Consensus 239 ~~l~~~~~~~--~~~~~a~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~li~~~~ 308 (600)
. +.-++... +...+++..+-... ..+...+..+..+|...|++.+|+.+|..+.. .+...|-.+..+|.
T Consensus 382 r-l~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~ 460 (895)
T KOG2076|consen 382 R-LMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYM 460 (895)
T ss_pred h-HhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHH
Confidence 1 11222233 33333333222111 23455677888889999999999999988866 35678888889999
Q ss_pred hCCChhHHHHHHHHHHHCCCCCChh-HHHHHHHHHhcccchhhhHHHHHHHh--------hhcCCCchhHHHHHHHHHHh
Q 007519 309 QNELFVEATYLFMEMRAHGVPPLNA-TFSVLFGAAGATANIDLGRQIHCVLM--------KTESESDLILENCLISMYAK 379 (600)
Q Consensus 309 ~~g~~~~a~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~ 379 (600)
..|.++.|++.|+..+.. .|+.. .-..|-..+.+.|+.++|.+.+..+. ..+..|...+.....+.+..
T Consensus 461 ~l~e~e~A~e~y~kvl~~--~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~ 538 (895)
T KOG2076|consen 461 ELGEYEEAIEFYEKVLIL--APDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQ 538 (895)
T ss_pred HHhhHHHHHHHHHHHHhc--CCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHH
Confidence 999999999999988875 45543 33445556778888888888887633 33345555555566677777
Q ss_pred cCChHHHHHHHhcCCC---------C-----------------ChhhHHHHHHHHHhcCChHHHHHH------HHHHHHc
Q 007519 380 CGVIDNAYNIFSNMVS---------R-----------------DLVSWNSMVMGFSHHGLANETLKV------FESMLES 427 (600)
Q Consensus 380 ~~~~~~A~~~~~~~~~---------~-----------------~~~~~~~l~~~~~~~~~~~~a~~~------~~~m~~~ 427 (600)
.|+.++=..+-..|.. | .......++.+-.+.++......- +......
T Consensus 539 ~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~ 618 (895)
T KOG2076|consen 539 VGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELR 618 (895)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhc
Confidence 7777665444333320 0 111122223333333322211111 1111112
Q ss_pred CCCCCh--hHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCCCcc----hHHHHHHHHhhcCChHHHHHHHHhCC-----
Q 007519 428 GTHPNS--VTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPE----HYVSMINLLGRAGKIKEAEEFVLRLP----- 496 (600)
Q Consensus 428 ~~~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~----- 496 (600)
|+.-+. ..+.-++.++++.+.+++|..+...+....-+.-+.. .-...+.+....+++..|.+.++.+.
T Consensus 619 ~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~ 698 (895)
T KOG2076|consen 619 GLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQF 698 (895)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhh
Confidence 222222 2344556677788888888888887776533333322 22334455567788888888777763
Q ss_pred -CCCC-HHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCC-CCcHHHHhHHHHhhCCcHHHHHHHHHH
Q 007519 497 -FEPD-HRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLN-APAHVVLCNIYAASGRHVEEHKLRMDM 562 (600)
Q Consensus 497 -~~p~-~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 562 (600)
..|. ...|+..++... ..|+-.--.+.+.++....|++ +..+...+......|.+..|.+.+-..
T Consensus 699 ~~~~~q~~l~n~~~s~~~-~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra 766 (895)
T KOG2076|consen 699 YLDVYQLNLWNLDFSYFS-KYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRA 766 (895)
T ss_pred hhhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHH
Confidence 1332 234454444444 5555555555555655566655 555556666677788888888855443
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.67 E-value=4e-12 Score=115.17 Aligned_cols=425 Identities=15% Similarity=0.140 Sum_probs=267.8
Q ss_pred cchHHHHHHHHHcCCChhHHHHHhhhcCCCCh----hhHHHHHHH--HHhcCChHHH-HHHhhcCCC---CCceeHHHHH
Q 007519 42 VVSYNAMLSGFLQNGRLSEARRLFEEMPERNV----VSWTAMICG--LADAGRVCEA-RKLFEEMPE---RNVVSWNSMV 111 (600)
Q Consensus 42 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~----~~~~~l~~~--~~~~g~~~~A-~~~~~~~~~---~~~~~~~~l~ 111 (600)
+++=+.|+... .+|...++-=+|+.|...+. ..-..|+.. |....++--| .+.|-.|.. .+..+|
T Consensus 116 V~~E~nL~kmI-S~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sW---- 190 (625)
T KOG4422|consen 116 VETENNLLKMI-SSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSW---- 190 (625)
T ss_pred hcchhHHHHHH-hhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccccccccc----
Confidence 34566666654 67889999999999886322 233333332 3333333222 223333332 333333
Q ss_pred HHHHHCCChhHHHHHhhcCCCCCcccHHHHHHHHHhcCCHhHHHHHHHhcc----cCCchhHHHHHHHHHhcCChhHHHH
Q 007519 112 VGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEME----ERNVVTWTSMISGYCRAGEVEEGYC 187 (600)
Q Consensus 112 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~ 187 (600)
+.|+..+ ++-+.......++.++|.+.++-...++|.+++++.. +.+..++|.+|.+-.-..+-+-.-+
T Consensus 191 ----K~G~vAd---L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~K~Lv~E 263 (625)
T KOG4422|consen 191 ----KSGAVAD---LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVGKKLVAE 263 (625)
T ss_pred ----ccccHHH---HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhccHHHHHH
Confidence 3344433 5555555677899999999999999999999999877 3577788888876544433222223
Q ss_pred HHccCCCCCcchHHHHHHHHHhcCChhH----HHHHHHHHHhhhcCCCCCChhhHHHHHHHHHhcCChhh-HHHHhcccC
Q 007519 188 LFRRMPRKNVVSWTAMIGGFAWNGFHKE----SLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEE-AQNLFDTVP 262 (600)
Q Consensus 188 ~~~~~~~~~~~~~~~li~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~ 262 (600)
....-..||..|+|+++.+..+.|+++. |++++.+|++. |+.|+..+|..+|..+++.++..+ +..++.++.
T Consensus 264 Misqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKei---GVePsLsSyh~iik~f~re~dp~k~as~~i~dI~ 340 (625)
T KOG4422|consen 264 MISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEI---GVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQ 340 (625)
T ss_pred HHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHh---CCCcchhhHHHHHHHhcccCCchhhhHHHHHHHH
Confidence 3333335999999999999999997764 56788999988 999999999999999999888754 334433332
Q ss_pred ------------CCCchhHHHHHHHHHhcCChHHHHHHHhhCCC--------CC---hhhHHHHHHHHHhCCChhHHHHH
Q 007519 263 ------------VRDEISWTSMIDGYLSVGQVSNAYYLFHNMPD--------RD---AVAWTAMISGLVQNELFVEATYL 319 (600)
Q Consensus 263 ------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--------~~---~~~~~~li~~~~~~g~~~~a~~~ 319 (600)
+.+...+...+..|.+..+.+-|.++..-+.. ++ ..-|..+....|+....+..+.+
T Consensus 341 N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~ 420 (625)
T KOG4422|consen 341 NSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKW 420 (625)
T ss_pred HhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677888888888888888877655543 12 23466677788888899999999
Q ss_pred HHHHHHCCCCCChhHHHHHHHHHhcccchhhhHHHHHHHhhhcCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCChh
Q 007519 320 FMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLV 399 (600)
Q Consensus 320 ~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 399 (600)
|+.|+-.-+-|+..+...++++....+.++-..+++..+...|.+.....-.-++..+++.+ ..|+..
T Consensus 421 Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k------------~hp~tp 488 (625)
T KOG4422|consen 421 YEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDK------------LHPLTP 488 (625)
T ss_pred HHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCC------------CCCCCh
Confidence 99999888889999999999999999999999999988888776554443333333333221 022211
Q ss_pred hHHHHHHHHHh--cCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCCCcchHHHHH-
Q 007519 400 SWNSMVMGFSH--HGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMI- 476 (600)
Q Consensus 400 ~~~~l~~~~~~--~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~- 476 (600)
.-..+-.+.++ ..-.+.....-.+|.+...+| ...+.++..+.+.|..++|.+++....+.+.-.|.....++|+
T Consensus 489 ~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~~~~--t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~E 566 (625)
T KOG4422|consen 489 EREQLQVAFAKCAADIKEAYESQPIRQRAQDWPA--TSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAE 566 (625)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHhccCCh--hHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHH
Confidence 11111111111 011111222223344333333 3345555556677777777777777755444444433444333
Q ss_pred --HHHhhcCChHHHHHHHHhC
Q 007519 477 --NLLGRAGKIKEAEEFVLRL 495 (600)
Q Consensus 477 --~~~~~~g~~~~A~~~~~~~ 495 (600)
+.-.+..+...|...++-+
T Consensus 567 l~d~a~~~~spsqA~~~lQ~a 587 (625)
T KOG4422|consen 567 LMDSAKVSNSPSQAIEVLQLA 587 (625)
T ss_pred HHHHHHhcCCHHHHHHHHHHH
Confidence 3334555566666665554
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.3e-12 Score=119.89 Aligned_cols=427 Identities=13% Similarity=0.133 Sum_probs=320.0
Q ss_pred hHHHHHHHHHcCCChhHHHHHhhhcCC---CChhhHHHHHHHHHhcCChHHHHHHhhcCCC--CCce-eHHHHHHHHHHC
Q 007519 44 SYNAMLSGFLQNGRLSEARRLFEEMPE---RNVVSWTAMICGLADAGRVCEARKLFEEMPE--RNVV-SWNSMVVGLIRN 117 (600)
Q Consensus 44 ~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~-~~~~l~~~~~~~ 117 (600)
.|.--..--..++++..|.++|+.++. .+...|-..+.+-.++..+..|..++++... |.+. .|.-.+-+--..
T Consensus 75 ~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~L 154 (677)
T KOG1915|consen 75 VWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEML 154 (677)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHh
Confidence 344444444567888899999999987 4556777778888899999999999998776 4432 466666666778
Q ss_pred CChhHHHHHhhcCCC--CCcccHHHHHHHHHhcCCHhHHHHHHHhcc--cCCchhHHHHHHHHHhcCChhHHHHHHccCC
Q 007519 118 GELNEARKVFNSMPI--KNVISWNAMIAGYVECCMMGEAIVLFEEME--ERNVVTWTSMISGYCRAGEVEEGYCLFRRMP 193 (600)
Q Consensus 118 ~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 193 (600)
|++..|.++|++..+ |+...+.+.++.-.+-..++.|..+++... .|++.+|......-.+.|+...|..+|+...
T Consensus 155 gNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAi 234 (677)
T KOG1915|consen 155 GNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAI 234 (677)
T ss_pred cccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 999999999999886 999999999999999999999999999876 7999999999999999999999999998776
Q ss_pred C---C---CcchHHHHHHHHHhcCChhHHHHHHHHHHhhhcCCCCCC--hhhHHHHHHHHHhcCChhhHHHH---hcccC
Q 007519 194 R---K---NVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCN--VQSCNSMINGYIRFGRLEEAQNL---FDTVP 262 (600)
Q Consensus 194 ~---~---~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~---~~~~~ 262 (600)
+ . +...+.++...-.++..++.|.-+|+-.+.. ++-+ ...|......--+.|+....... -+.+.
T Consensus 235 e~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~----~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~q 310 (677)
T KOG1915|consen 235 EFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDH----IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQ 310 (677)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhH
Confidence 4 1 2234555555556778899999999998875 2222 33444444444455664443332 22222
Q ss_pred --------CCCchhHHHHHHHHHhcCChHHHHHHHhhCCC--CCh---hhHHHHHH--------HHHhCCChhHHHHHHH
Q 007519 263 --------VRDEISWTSMIDGYLSVGQVSNAYYLFHNMPD--RDA---VAWTAMIS--------GLVQNELFVEATYLFM 321 (600)
Q Consensus 263 --------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~---~~~~~li~--------~~~~~g~~~~a~~~~~ 321 (600)
+.|..+|-..+..-...|+.+...++|++... |.. ..|...|. .-....+.+.+.++|+
T Consensus 311 YE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq 390 (677)
T KOG1915|consen 311 YEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQ 390 (677)
T ss_pred HHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 44666777788888888999999999998765 211 12222221 1235788999999999
Q ss_pred HHHHCCCCCChhHHHHHHHHH----hcccchhhhHHHHHHHhhhcCCCchhHHHHHHHHHHhcCChHHHHHHHhcCC---
Q 007519 322 EMRAHGVPPLNATFSVLFGAA----GATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMV--- 394 (600)
Q Consensus 322 ~m~~~g~~p~~~~~~~l~~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--- 394 (600)
..++. ++....||..+--.| .+..++..|.+++..+. |..|...++...|..-.+.++++.+..++++..
T Consensus 391 ~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~ 467 (677)
T KOG1915|consen 391 ACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS 467 (677)
T ss_pred HHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 99884 566667877655544 46778999999998665 567788889999999999999999999999876
Q ss_pred CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCChhHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCCCcchHH
Q 007519 395 SRDLVSWNSMVMGFSHHGLANETLKVFESMLESG-THPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYV 473 (600)
Q Consensus 395 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~ 473 (600)
+.|..+|......-...|+.+.|..+|.-..+.. +......|...|+--...|.++.|..+++++.+. .+...+|-
T Consensus 468 Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r---t~h~kvWi 544 (677)
T KOG1915|consen 468 PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR---TQHVKVWI 544 (677)
T ss_pred hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh---cccchHHH
Confidence 5577889999888889999999999999988642 1223355666666667899999999999999976 45555776
Q ss_pred HHHHHHh
Q 007519 474 SMINLLG 480 (600)
Q Consensus 474 ~l~~~~~ 480 (600)
+.+..-.
T Consensus 545 sFA~fe~ 551 (677)
T KOG1915|consen 545 SFAKFEA 551 (677)
T ss_pred hHHHHhc
Confidence 6665433
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.5e-16 Score=147.07 Aligned_cols=254 Identities=19% Similarity=0.184 Sum_probs=111.8
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHH-HHHHHhcccchhhhHHHHHHHhhhcCCCchhHHHHHHHHHHhcC
Q 007519 303 MISGLVQNELFVEATYLFMEMRAHGVPPLNATFSV-LFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCG 381 (600)
Q Consensus 303 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 381 (600)
+...+.+.|++++|++++++......+|+...|-. +...+...++.+.|...++.+.+.+.. ++..+..++.. ...+
T Consensus 14 ~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 14 LARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-cccc
Confidence 35556677777777777765544432344444433 334555667777777777777665544 45556666666 6889
Q ss_pred ChHHHHHHHhcCC--CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCChhHHHHHHHHhcccCchHHHHHHHHH
Q 007519 382 VIDNAYNIFSNMV--SRDLVSWNSMVMGFSHHGLANETLKVFESMLESG-THPNSVTFLGILSACSHAGLVSRGWELFNA 458 (600)
Q Consensus 382 ~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 458 (600)
++++|.+++.... .++...+..++..+...++++++.++++.+.... .+++...|..+...+.+.|+.++|.+.+++
T Consensus 92 ~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~ 171 (280)
T PF13429_consen 92 DPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRK 171 (280)
T ss_dssp --------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred cccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999998887764 4566778888888999999999999999987543 245666777788889999999999999999
Q ss_pred HHhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCC
Q 007519 459 MFDVYKIQP-GPEHYVSMINLLGRAGKIKEAEEFVLRLP--FEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLN 535 (600)
Q Consensus 459 ~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~ 535 (600)
+.+. .| +......++..+...|+.+++.++++... .+.++..+..+..++. ..|+.++|+..++++.+..|+|
T Consensus 172 al~~---~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~-~lg~~~~Al~~~~~~~~~~p~d 247 (280)
T PF13429_consen 172 ALEL---DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYL-QLGRYEEALEYLEKALKLNPDD 247 (280)
T ss_dssp HHHH----TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHH-HHT-HHHHHHHHHHHHHHSTT-
T ss_pred HHHc---CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhc-cccccccccccccccccccccc
Confidence 9975 67 57789999999999999999888887764 2345556777888888 9999999999999999999999
Q ss_pred CCcHHHHhHHHHhhCCcHHHHHHHHHH
Q 007519 536 APAHVVLCNIYAASGRHVEEHKLRMDM 562 (600)
Q Consensus 536 ~~~~~~l~~~~~~~g~~~~A~~~~~~~ 562 (600)
+.+...++.++...|+.++|.+++...
T Consensus 248 ~~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 248 PLWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp HHHHHHHHHHHT---------------
T ss_pred ccccccccccccccccccccccccccc
Confidence 999999999999999999999977654
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.63 E-value=6.5e-13 Score=122.30 Aligned_cols=213 Identities=14% Similarity=0.091 Sum_probs=170.6
Q ss_pred hcccchhhhHHHHHHHhhhcCCCchhHHHHHHHHHHhcCChHHHHHHHhcCC---CCChhhHHHHHHHHHhcCChHHHHH
Q 007519 343 GATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMV---SRDLVSWNSMVMGFSHHGLANETLK 419 (600)
Q Consensus 343 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~ 419 (600)
.-.|+.-.+..-++...+....++. .|--+..+|....+.++-...|+... +.|+.+|..-.+.+.-.+++++|..
T Consensus 337 fL~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~a 415 (606)
T KOG0547|consen 337 FLKGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIA 415 (606)
T ss_pred hhcCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHH
Confidence 4467788888888888777655433 25566778899999999999998876 5678889888888888999999999
Q ss_pred HHHHHHHcCCCCC-hhHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhCC-C
Q 007519 420 VFESMLESGTHPN-SVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLP-F 497 (600)
Q Consensus 420 ~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~ 497 (600)
=|++..+. .|+ ...|..+.-+..+.+.++++...|++.+++ ++--+.+|+..+..+..++++++|.+.|+... +
T Consensus 416 DF~Kai~L--~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk--FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L 491 (606)
T KOG0547|consen 416 DFQKAISL--DPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK--FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL 491 (606)
T ss_pred HHHHHhhc--ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh
Confidence 99999874 554 456666666667889999999999999985 43358899999999999999999999998863 4
Q ss_pred CCC-------H-HHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCCcHHHHhHHHHhhCCcHHHHHHHHH
Q 007519 498 EPD-------H-RIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMD 561 (600)
Q Consensus 498 ~p~-------~-~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 561 (600)
.|+ . ...+-.+-.+.|+ +|+..|+.++.++++++|....+|..|+..-.+.|+.++|+++++.
T Consensus 492 E~~~~~~~v~~~plV~Ka~l~~qwk-~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEk 562 (606)
T KOG0547|consen 492 EPREHLIIVNAAPLVHKALLVLQWK-EDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEK 562 (606)
T ss_pred ccccccccccchhhhhhhHhhhchh-hhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 454 1 1222233334434 8999999999999999999999999999999999999999998864
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.3e-12 Score=118.04 Aligned_cols=327 Identities=14% Similarity=0.067 Sum_probs=242.0
Q ss_pred CCCCChhhHHHHHHHHHhcCChhhHHHHhcccCCCCchhHHHHHHHHHhcCChHHHHHHHhhCCCCChhhH-HHHHHHHH
Q 007519 230 GNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAW-TAMISGLV 308 (600)
Q Consensus 230 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~li~~~~ 308 (600)
+...|...+-.....+.+.|..+.|+..|......-|..|.+.+....-..+.+.+..+...+...+...- -.+..++.
T Consensus 159 ~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~ 238 (559)
T KOG1155|consen 159 GGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQ 238 (559)
T ss_pred cccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHH
Confidence 44455555545555666788899999988888766667777766655555555555555444443222221 22345666
Q ss_pred hCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhcccchhhhHHHHHHHhhhcC--CCchhHHHHHHHHHHhcCChHHH
Q 007519 309 QNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTES--ESDLILENCLISMYAKCGVIDNA 386 (600)
Q Consensus 309 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A 386 (600)
.....+++++-.+.....|.+.+...-+....+.....++++|..+|+++.+..+ -.|..+|+.++-.-..+.++.--
T Consensus 239 el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~L 318 (559)
T KOG1155|consen 239 ELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYL 318 (559)
T ss_pred HHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHH
Confidence 6678888999888888888766666555555666788899999999999988743 12566777666443332222221
Q ss_pred HHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh-hHHHHHHHHhcccCchHHHHHHHHHHHhhcCC
Q 007519 387 YNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNS-VTFLGILSACSHAGLVSRGWELFNAMFDVYKI 465 (600)
Q Consensus 387 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 465 (600)
....-.+-+--+.|..++.+-|.-.++.++|...|++..+. .|.. ..|..+..-|....+...|.+.++++++ +
T Consensus 319 A~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkL--Np~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd---i 393 (559)
T KOG1155|consen 319 AQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKL--NPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVD---I 393 (559)
T ss_pred HHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhc--CcchhHHHHHhhHHHHHhcccHHHHHHHHHHHh---c
Confidence 12222223445567778888999999999999999999874 5655 4455555778999999999999999984 5
Q ss_pred CC-CcchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCCcHHHH
Q 007519 466 QP-GPEHYVSMINLLGRAGKIKEAEEFVLRLP-FEP-DHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVL 542 (600)
Q Consensus 466 ~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 542 (600)
.| |-..|..|+.+|.-.+.+.-|+-+|++.. .+| |...|..+...|. +.++.++|++.|++++...--+..++..|
T Consensus 394 ~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~-kl~~~~eAiKCykrai~~~dte~~~l~~L 472 (559)
T KOG1155|consen 394 NPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYE-KLNRLEEAIKCYKRAILLGDTEGSALVRL 472 (559)
T ss_pred CchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHH-HhccHHHHHHHHHHHHhccccchHHHHHH
Confidence 77 78899999999999999999999999975 566 6778888888888 99999999999999999877688999999
Q ss_pred hHHHHhhCCcHHHHHHHHHH
Q 007519 543 CNIYAASGRHVEEHKLRMDM 562 (600)
Q Consensus 543 ~~~~~~~g~~~~A~~~~~~~ 562 (600)
+.+|-+.++..+|...++.-
T Consensus 473 akLye~l~d~~eAa~~yek~ 492 (559)
T KOG1155|consen 473 AKLYEELKDLNEAAQYYEKY 492 (559)
T ss_pred HHHHHHHHhHHHHHHHHHHH
Confidence 99999999999999965443
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.57 E-value=4.8e-11 Score=109.52 Aligned_cols=310 Identities=11% Similarity=0.063 Sum_probs=128.9
Q ss_pred HHHHhcCCHhHHHHHHHhcccCCchhHHHHHHHHHhcCChhHHHHHHccCCCCCcchH-HHHHHHHHhcCChhHHHHHHH
Q 007519 143 AGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSW-TAMIGGFAWNGFHKESLLLFI 221 (600)
Q Consensus 143 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~li~~~~~~~~~~~a~~~~~ 221 (600)
-.+.+.|..+.|++.|......-+..|.+.+....-.-+.+.+..+...+...+...- --+..++......+++++-..
T Consensus 172 vv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~el~q~~e~~~k~e 251 (559)
T KOG1155|consen 172 VVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQELHQHEEALQKKE 251 (559)
T ss_pred HHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555666655555544444444444443333344444333333332211111 112223333344455554444
Q ss_pred HHHhhhcCCCCCChhhHHHHHHHHHhcCChhhHHHHhcccCCCCc------hhHHHHHHHHHhcCChH-HHHHHHhhCCC
Q 007519 222 EMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDE------ISWTSMIDGYLSVGQVS-NAYYLFHNMPD 294 (600)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~-~A~~~~~~~~~ 294 (600)
..... |++.+...-+....+.-...++|+|+.+|+++.+.|+ .+|+.++-.-....++. -|..++ .+.+
T Consensus 252 ~l~~~---gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~-~idK 327 (559)
T KOG1155|consen 252 RLSSV---GFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVS-NIDK 327 (559)
T ss_pred HHHhc---cCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHH-Hhcc
Confidence 44432 4444444333344444455666666666666653332 23333322111111111 011111 1111
Q ss_pred CChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhcccchhhhHHHHHHHhhhcCCCchhHHHHH
Q 007519 295 RDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLN-ATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCL 373 (600)
Q Consensus 295 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 373 (600)
=-+.|.-++.+.|.-.++.++|...|++.++. .|.. ..++.+.+-|....+...|.+-++.+.+-... |-..|-.|
T Consensus 328 yR~ETCCiIaNYYSlr~eHEKAv~YFkRALkL--Np~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~-DyRAWYGL 404 (559)
T KOG1155|consen 328 YRPETCCIIANYYSLRSEHEKAVMYFKRALKL--NPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPR-DYRAWYGL 404 (559)
T ss_pred CCccceeeehhHHHHHHhHHHHHHHHHHHHhc--CcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCch-hHHHHhhh
Confidence 12233444444445555555555555555543 2222 22333333444444444444444444433221 33344444
Q ss_pred HHHHHhcCChHHHHHHHhcCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccCchH
Q 007519 374 ISMYAKCGVIDNAYNIFSNMV---SRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVS 450 (600)
Q Consensus 374 ~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~ 450 (600)
.++|.-.+...=|+-.|++.. +.|...|.+|..+|.+.++.++|++.|......| ..+...+..+.+.|-+.++.+
T Consensus 405 GQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~~~l~~LakLye~l~d~~ 483 (559)
T KOG1155|consen 405 GQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEGSALVRLAKLYEELKDLN 483 (559)
T ss_pred hHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHHHHhHH
Confidence 444444444444444444432 3344444444444444444444444444444433 223344444444444444444
Q ss_pred HHHHHHHHHH
Q 007519 451 RGWELFNAMF 460 (600)
Q Consensus 451 ~a~~~~~~~~ 460 (600)
+|...|++..
T Consensus 484 eAa~~yek~v 493 (559)
T KOG1155|consen 484 EAAQYYEKYV 493 (559)
T ss_pred HHHHHHHHHH
Confidence 4444444443
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=8.6e-12 Score=121.95 Aligned_cols=281 Identities=10% Similarity=-0.022 Sum_probs=153.3
Q ss_pred cCChhHHHHHHHHHHhhhcCCCCCChhh-HHHHHHHHHhcCChhhHHHHhcccCC--CCchhHH--HHHHHHHhcCChHH
Q 007519 210 NGFHKESLLLFIEMKGICDNGNNCNVQS-CNSMINGYIRFGRLEEAQNLFDTVPV--RDEISWT--SMIDGYLSVGQVSN 284 (600)
Q Consensus 210 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~--~l~~~~~~~~~~~~ 284 (600)
.|+++.|.+.+....+. .+++.. |.....+..+.|+++.|...+.++.. ++..... .....+...|++++
T Consensus 97 eGd~~~A~k~l~~~~~~-----~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~ 171 (398)
T PRK10747 97 EGDYQQVEKLMTRNADH-----AEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHA 171 (398)
T ss_pred CCCHHHHHHHHHHHHhc-----ccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHH
Confidence 46666666555554321 112222 22222333556666666666666552 2221111 22344555555555
Q ss_pred HHHHHhhCCC---CChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhcccchhhhHHHHHHHhhh
Q 007519 285 AYYLFHNMPD---RDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKT 361 (600)
Q Consensus 285 A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 361 (600)
|...++.+.+ .+......+...|.+.|++++|.+++..+.+.+..++ .....+-
T Consensus 172 Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~-~~~~~l~---------------------- 228 (398)
T PRK10747 172 ARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDE-EHRAMLE---------------------- 228 (398)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCH-HHHHHHH----------------------
Confidence 5555555443 2334445555555555555555555555555432211 1110000
Q ss_pred cCCCchhHHHHHHHHHHhcCChHHHHHHHhcCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHH
Q 007519 362 ESESDLILENCLISMYAKCGVIDNAYNIFSNMV---SRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLG 438 (600)
Q Consensus 362 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ 438 (600)
...|..++.......+.+...++++.+. +.++.....+...+...|+.++|.+++++..+. +|+....
T Consensus 229 -----~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~-- 299 (398)
T PRK10747 229 -----QQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV-- 299 (398)
T ss_pred -----HHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--
Confidence 0111222222333344555566666654 446666777777777778888888777777662 4444221
Q ss_pred HHHHhcccCchHHHHHHHHHHHhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhCC-CCCCHHHHHHHHHHHhhhhC
Q 007519 439 ILSACSHAGLVSRGWELFNAMFDVYKIQP-GPEHYVSMINLLGRAGKIKEAEEFVLRLP-FEPDHRIWGALLGACGFCEG 516 (600)
Q Consensus 439 l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~~~~~~~~g 516 (600)
++.+....++.+++.+..+...+. .| |+..+.+++..+.+.|++++|.+.|++.. ..|+...+..+...+. +.|
T Consensus 300 ~l~~~l~~~~~~~al~~~e~~lk~---~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~-~~g 375 (398)
T PRK10747 300 LLIPRLKTNNPEQLEKVLRQQIKQ---HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALD-RLH 375 (398)
T ss_pred HHHhhccCCChHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHH-HcC
Confidence 233334457777777777777654 44 45566677777777777777777777754 5677777666666666 777
Q ss_pred CHHHHHHHHHHHHhh
Q 007519 517 NAEIAEHAAKRLLEL 531 (600)
Q Consensus 517 ~~~~a~~~~~~~~~~ 531 (600)
+.++|..++++.+.+
T Consensus 376 ~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 376 KPEEAAAMRRDGLML 390 (398)
T ss_pred CHHHHHHHHHHHHhh
Confidence 777777777777654
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.55 E-value=6.8e-13 Score=127.22 Aligned_cols=276 Identities=12% Similarity=0.024 Sum_probs=208.9
Q ss_pred CChHHHHHHHhhCCC--CCh-hhHHHHHHHHHhCCChhHHHHHHHHHHHCC--CCCChhHHHHHHHHHhcccchhhhHHH
Q 007519 280 GQVSNAYYLFHNMPD--RDA-VAWTAMISGLVQNELFVEATYLFMEMRAHG--VPPLNATFSVLFGAAGATANIDLGRQI 354 (600)
Q Consensus 280 ~~~~~A~~~~~~~~~--~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~g--~~p~~~~~~~l~~~~~~~~~~~~a~~~ 354 (600)
-+..+|+..|..+.. +|+ .....+..+|...+++++|.++|+.+.+.. ..-+..+|.+.+-.+-+ +-+..+
T Consensus 333 y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~ 408 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSY 408 (638)
T ss_pred HHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHH
Confidence 356778888888554 333 455667888999999999999999988752 11234566666544322 112222
Q ss_pred HHHHhhhcCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCC---ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 007519 355 HCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSR---DLVSWNSMVMGFSHHGLANETLKVFESMLESGTHP 431 (600)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p 431 (600)
+..-.-.--+..+.+|.++.++|.-+++.+.|++.|++...- ...+|+.+..-+.....+|.|...|+.... +.|
T Consensus 409 Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~~~ 486 (638)
T KOG1126|consen 409 LAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG--VDP 486 (638)
T ss_pred HHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--CCc
Confidence 221111123447889999999999999999999999998843 456788888888889999999999998863 344
Q ss_pred Ch-hHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHH
Q 007519 432 NS-VTFLGILSACSHAGLVSRGWELFNAMFDVYKIQP-GPEHYVSMINLLGRAGKIKEAEEFVLRLP-FEP-DHRIWGAL 507 (600)
Q Consensus 432 ~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l 507 (600)
.. ..|-.+...|.+.++++.|.-.|+++. .+.| +......++..+.+.|+.++|+++++++. .+| ++..--..
T Consensus 487 rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~---~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~ 563 (638)
T KOG1126|consen 487 RHYNAWYGLGTVYLKQEKLEFAEFHFQKAV---EINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHR 563 (638)
T ss_pred hhhHHHHhhhhheeccchhhHHHHHHHhhh---cCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHH
Confidence 33 455566788999999999999999987 5688 67788889999999999999999999975 444 34443344
Q ss_pred HHHHhhhhCCHHHHHHHHHHHHhhCCCCCCcHHHHhHHHHhhCCcHHHHHHHHHHhhc
Q 007519 508 LGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLK 565 (600)
Q Consensus 508 ~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 565 (600)
+..+. ..+++++|++.++++.++-|++...+..++.+|.+.|+.+.|..=+..+.+-
T Consensus 564 ~~il~-~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~l 620 (638)
T KOG1126|consen 564 ASILF-SLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDL 620 (638)
T ss_pred HHHHH-hhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcC
Confidence 44555 7899999999999999999999999999999999999999999866555443
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.55 E-value=3e-11 Score=113.71 Aligned_cols=467 Identities=10% Similarity=0.008 Sum_probs=275.8
Q ss_pred hHHHHHHHHHhcCChHHHHHHhhcCCC--CCceeHHHHHHHHHHCCChhHHHHHhhcCC--CCCcccHHHHHHHHHhcCC
Q 007519 75 SWTAMICGLADAGRVCEARKLFEEMPE--RNVVSWNSMVVGLIRNGELNEARKVFNSMP--IKNVISWNAMIAGYVECCM 150 (600)
Q Consensus 75 ~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--~~~~~~~~~l~~~~~~~~~ 150 (600)
-+..+.+-+..+.++.-|.-+-+++.. .|+..-.-+++++.-.|+++.|..++..-. ..|..+......++.+..+
T Consensus 18 ~~~~~~r~~l~q~~y~~a~f~adkV~~l~~dp~d~~~~aq~l~~~~~y~ra~~lit~~~le~~d~~cryL~~~~l~~lk~ 97 (611)
T KOG1173|consen 18 KYRRLVRDALMQHRYKTALFWADKVAGLTNDPADIYWLAQVLYLGRQYERAAHLITTYKLEKRDIACRYLAAKCLVKLKE 97 (611)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHhccCChHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHH
Confidence 344555555556666666666555543 445555556677777777777766665543 2566666666666677777
Q ss_pred HhHHHHHHHhccc-CCchhHHHHHHHHHhcCChhHHHHHHccCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhhhcC
Q 007519 151 MGEAIVLFEEMEE-RNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDN 229 (600)
Q Consensus 151 ~~~A~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 229 (600)
+++|..++..... -++..|-.-- + ...-..+.+.+... ..-....+-.-...|....+.++|...+++...
T Consensus 98 ~~~al~vl~~~~~~~~~f~yy~~~-~-~~~l~~n~~~~~~~--~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~---- 169 (611)
T KOG1173|consen 98 WDQALLVLGRGHVETNPFSYYEKD-A-ANTLELNSAGEDLM--INLESSICYLRGKVYVALDNREEARDKYKEALL---- 169 (611)
T ss_pred HHHHHHHhcccchhhcchhhcchh-h-hceeccCccccccc--ccchhceeeeeeehhhhhccHHHHHHHHHHHHh----
Confidence 7777776664310 0111110000 0 00000111110000 000000111111234445566777777776653
Q ss_pred CCCCChhhHHHHHHHHHhc-CChhhHHHHhcccC-----CCCchhHHHHHHHHHhcCChHHHHHHH--hhCC--CCChhh
Q 007519 230 GNNCNVQSCNSMINGYIRF-GRLEEAQNLFDTVP-----VRDEISWTSMIDGYLSVGQVSNAYYLF--HNMP--DRDAVA 299 (600)
Q Consensus 230 ~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~A~~~~--~~~~--~~~~~~ 299 (600)
.|...+..+...-... =..++-..+++... ..+......+.........-+.....- ..+. ..++..
T Consensus 170 ---~D~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dl 246 (611)
T KOG1173|consen 170 ---ADAKCFEAFEKLVSAHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDL 246 (611)
T ss_pred ---cchhhHHHHHHHHHHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHH
Confidence 3444443332211110 01112233333211 111111111111110000000000000 0000 124444
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhcccchhhhHHHHHHHhhhcCCCchhHHHHHHHHHHh
Q 007519 300 WTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAK 379 (600)
Q Consensus 300 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 379 (600)
......-+...+++.+..++.+...+.. ++....+..-|.++...|+...-..+-..+.+. .+..+.+|-++.-.|.-
T Consensus 247 l~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl~ 324 (611)
T KOG1173|consen 247 LAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYLM 324 (611)
T ss_pred HHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHHHH
Confidence 5555666777888889999888887763 556666666666777777766655554455544 34467778888888888
Q ss_pred cCChHHHHHHHhcCCCCC---hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccCchHHHHHHH
Q 007519 380 CGVIDNAYNIFSNMVSRD---LVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELF 456 (600)
Q Consensus 380 ~~~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 456 (600)
.|+..+|++.|.+...-| ...|-.+...|+-.|..++|+..+...-+. ++-....+.-+..-|.+.++...|.++|
T Consensus 325 i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLAe~Ff 403 (611)
T KOG1173|consen 325 IGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLAEKFF 403 (611)
T ss_pred hcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHHHHHH
Confidence 899999999998876333 467888899999999999999988887764 2323333444555677889999999999
Q ss_pred HHHHhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhCC-----C---CC-CHHHHHHHHHHHhhhhCCHHHHHHHHH
Q 007519 457 NAMFDVYKIQP-GPEHYVSMINLLGRAGKIKEAEEFVLRLP-----F---EP-DHRIWGALLGACGFCEGNAEIAEHAAK 526 (600)
Q Consensus 457 ~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~---~p-~~~~~~~l~~~~~~~~g~~~~a~~~~~ 526 (600)
..+. ++.| |+.+++-++-.....+.+.+|..+|+... . .+ -.++++.+.-++. +.+.+++|+..++
T Consensus 404 ~~A~---ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~R-kl~~~~eAI~~~q 479 (611)
T KOG1173|consen 404 KQAL---AIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYR-KLNKYEEAIDYYQ 479 (611)
T ss_pred HHHH---hcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHH-HHhhHHHHHHHHH
Confidence 8886 5677 68888888888888899999998887753 1 11 2345777888888 9999999999999
Q ss_pred HHHhhCCCCCCcHHHHhHHHHhhCCcHHHHHHH
Q 007519 527 RLLELDPLNAPAHVVLCNIYAASGRHVEEHKLR 559 (600)
Q Consensus 527 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 559 (600)
+++.+.|.++.+|..++.+|...|+++.|.+.+
T Consensus 480 ~aL~l~~k~~~~~asig~iy~llgnld~Aid~f 512 (611)
T KOG1173|consen 480 KALLLSPKDASTHASIGYIYHLLGNLDKAIDHF 512 (611)
T ss_pred HHHHcCCCchhHHHHHHHHHHHhcChHHHHHHH
Confidence 999999999999999999999999999999844
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=5.5e-12 Score=123.29 Aligned_cols=272 Identities=13% Similarity=0.107 Sum_probs=170.7
Q ss_pred hcCChhHHHHHHccCCCC--Ccc-hHHHHHHHHHhcCChhHHHHHHHHHHhhhcCCCCCChhhHH--HHHHHHHhcCChh
Q 007519 178 RAGEVEEGYCLFRRMPRK--NVV-SWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCN--SMINGYIRFGRLE 252 (600)
Q Consensus 178 ~~g~~~~A~~~~~~~~~~--~~~-~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~ 252 (600)
-.|+++.|++.+....+. ++. .|.....+..+.|+++.|.+.+.++.+. .|+...+. .....+...|+++
T Consensus 96 ~eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~-----~~~~~~~~~l~~a~l~l~~g~~~ 170 (398)
T PRK10747 96 AEGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL-----ADNDQLPVEITRVRIQLARNENH 170 (398)
T ss_pred hCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-----CCcchHHHHHHHHHHHHHCCCHH
Confidence 369999999999877653 233 3333345558999999999999999864 66665443 3356888999999
Q ss_pred hHHHHhcccC---CCCchhHHHHHHHHHhcCChHHHHHHHhhCCCCCh---h--------hHHHHHHHHHhCCChhHHHH
Q 007519 253 EAQNLFDTVP---VRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDA---V--------AWTAMISGLVQNELFVEATY 318 (600)
Q Consensus 253 ~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~--------~~~~li~~~~~~g~~~~a~~ 318 (600)
.|...++.+. +.++.+...+...|.+.|++++|..++..+.+... . +|..++.......+.+...+
T Consensus 171 ~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~ 250 (398)
T PRK10747 171 AARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKR 250 (398)
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 9999998887 56778889999999999999999999988876221 1 22222222223333333344
Q ss_pred HHHHHHHCCCCCChhHHHHHHHHHhcccchhhhHHHHHHHhhhcCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCCh
Q 007519 319 LFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDL 398 (600)
Q Consensus 319 ~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 398 (600)
+++.+.+. .+ .++.....+...+...|+.++|...+++..+...
T Consensus 251 ~w~~lp~~-~~-----------------------------------~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~ 294 (398)
T PRK10747 251 WWKNQSRK-TR-----------------------------------HQVALQVAMAEHLIECDDHDTAQQIILDGLKRQY 294 (398)
T ss_pred HHHhCCHH-Hh-----------------------------------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 44433221 12 2344444555555556666666555555442111
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh-hHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCCCcchHHHHHH
Q 007519 399 VSWNSMVMGFSHHGLANETLKVFESMLESGTHPNS-VTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMIN 477 (600)
Q Consensus 399 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 477 (600)
..--.++.+....++.+++++.++...+. .|+. ..+..+...|.+.|++++|.+.|+.+.+ ..|+...+..+..
T Consensus 295 ~~~l~~l~~~l~~~~~~~al~~~e~~lk~--~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~---~~P~~~~~~~La~ 369 (398)
T PRK10747 295 DERLVLLIPRLKTNNPEQLEKVLRQQIKQ--HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALK---QRPDAYDYAWLAD 369 (398)
T ss_pred CHHHHHHHhhccCCChHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCHHHHHHHHH
Confidence 11112233333446666666666666654 3333 3455556666677777777777776664 3566666666777
Q ss_pred HHhhcCChHHHHHHHHhC
Q 007519 478 LLGRAGKIKEAEEFVLRL 495 (600)
Q Consensus 478 ~~~~~g~~~~A~~~~~~~ 495 (600)
++.+.|+.++|.+++++.
T Consensus 370 ~~~~~g~~~~A~~~~~~~ 387 (398)
T PRK10747 370 ALDRLHKPEEAAAMRRDG 387 (398)
T ss_pred HHHHcCCHHHHHHHHHHH
Confidence 777777777777666553
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.53 E-value=8.4e-13 Score=126.58 Aligned_cols=249 Identities=14% Similarity=0.092 Sum_probs=195.7
Q ss_pred CChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhcccchhhhHHHHHHHhhhcC--CCchhHHHHHHHHHHhcCChHHHHH
Q 007519 311 ELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTES--ESDLILENCLISMYAKCGVIDNAYN 388 (600)
Q Consensus 311 g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~ 388 (600)
-++.+|+..|.....+ +.-+......+..+|...++.+++..+|+.+.+... --+..+|.+.+-.+-+.=.+.---+
T Consensus 333 y~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq 411 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQ 411 (638)
T ss_pred HHHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHH
Confidence 4578999999995554 445557778888899999999999999998877542 2266777777654433222211111
Q ss_pred HHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-ChhHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCC
Q 007519 389 IFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHP-NSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQP 467 (600)
Q Consensus 389 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p 467 (600)
-+-.+-+..+.+|-++.++|.-+++.+.|++.|++..+ +.| ...+|..+..-+.....+|.|...|+.++ ++.|
T Consensus 412 ~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al---~~~~ 486 (638)
T KOG1126|consen 412 DLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRKAL---GVDP 486 (638)
T ss_pred HHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc--cCCccchhhhhcCChhhhhHHHHhHHHHHHhhh---cCCc
Confidence 22222356788999999999999999999999999987 466 55777777777788899999999999887 3445
Q ss_pred -CcchHHHHHHHHhhcCChHHHHHHHHhCC-CCCCHHHHHHHH-HHHhhhhCCHHHHHHHHHHHHhhCCCCCCcHHHHhH
Q 007519 468 -GPEHYVSMINLLGRAGKIKEAEEFVLRLP-FEPDHRIWGALL-GACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCN 544 (600)
Q Consensus 468 -~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~-~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 544 (600)
+-..|.-|+-.|.+.++++.|+-.|+++. +.|...+...-+ ..+. +.|+.++|++++++++.++|.|+..-..-+.
T Consensus 487 rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~-~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~ 565 (638)
T KOG1126|consen 487 RHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQH-QLKRKDKALQLYEKAIHLDPKNPLCKYHRAS 565 (638)
T ss_pred hhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHH-HhhhhhHHHHHHHHHHhcCCCCchhHHHHHH
Confidence 24455567889999999999999999975 788776655444 4556 8999999999999999999999999999999
Q ss_pred HHHhhCCcHHHHHHHHHHhhcC
Q 007519 545 IYAASGRHVEEHKLRMDMGLKG 566 (600)
Q Consensus 545 ~~~~~g~~~~A~~~~~~~~~~~ 566 (600)
++...+++++|...++++++--
T Consensus 566 il~~~~~~~eal~~LEeLk~~v 587 (638)
T KOG1126|consen 566 ILFSLGRYVEALQELEELKELV 587 (638)
T ss_pred HHHhhcchHHHHHHHHHHHHhC
Confidence 9999999999999999998643
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.53 E-value=3e-10 Score=103.32 Aligned_cols=422 Identities=13% Similarity=0.133 Sum_probs=251.2
Q ss_pred CCCccchhHHHHHHHhcCChhhHHHHhccCCCCC----cchHHHHHH--HHHcCCChhHH-HHHhhhcCC---CChhhHH
Q 007519 8 KSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRN----VVSYNAMLS--GFLQNGRLSEA-RRLFEEMPE---RNVVSWT 77 (600)
Q Consensus 8 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~l~~--~~~~~~~~~~A-~~~~~~~~~---~~~~~~~ 77 (600)
|.++.+-+.|++. ...|.+.++--+|+.|.+.+ ...-..|++ .|.++.++.-| ++.|-.|.+ .+..+|
T Consensus 113 ~~~V~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sW- 190 (625)
T KOG4422|consen 113 PLQVETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSW- 190 (625)
T ss_pred chhhcchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccccccccc-
Confidence 3445556666654 45688889999999998632 233444443 34444444433 444444543 222232
Q ss_pred HHHHHHHhcCChHHHHHHhhcCCCCCceeHHHHHHHHHHCCChhHHHHHhhcCCC----CCcccHHHHHHHHHhcCCHhH
Q 007519 78 AMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPI----KNVISWNAMIAGYVECCMMGE 153 (600)
Q Consensus 78 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~ 153 (600)
+.|.+.+ ++-+.......++..+|.++++-...+.|.+++++... .+..+||.+|.+-.-..+
T Consensus 191 -------K~G~vAd---L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~--- 257 (625)
T KOG4422|consen 191 -------KSGAVAD---LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG--- 257 (625)
T ss_pred -------ccccHHH---HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc---
Confidence 3454443 44444445567888888888888888888888888765 566778888766543333
Q ss_pred HHHHHHhcc----cCCchhHHHHHHHHHhcCChhHHHHHH----ccCC----CCCcchHHHHHHHHHhcCChhH-HHHHH
Q 007519 154 AIVLFEEME----ERNVVTWTSMISGYCRAGEVEEGYCLF----RRMP----RKNVVSWTAMIGGFAWNGFHKE-SLLLF 220 (600)
Q Consensus 154 A~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~----~~~~----~~~~~~~~~li~~~~~~~~~~~-a~~~~ 220 (600)
.+++.+|. .||..|+|+++.+..+.|+++.|.+.+ .+|+ +|...+|..+|..+.+.++..+ |..++
T Consensus 258 -K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i 336 (625)
T KOG4422|consen 258 -KKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWI 336 (625)
T ss_pred -HHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHH
Confidence 55566665 588899999999888888887765544 3443 4788888888888888777644 55555
Q ss_pred HHHHhh-----hcCCCCCChhhHHHHHHHHHhcCChhhHHHHhcccC--------CC---CchhHHHHHHHHHhcCChHH
Q 007519 221 IEMKGI-----CDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVP--------VR---DEISWTSMIDGYLSVGQVSN 284 (600)
Q Consensus 221 ~~~~~~-----~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--------~~---~~~~~~~l~~~~~~~~~~~~ 284 (600)
.++... +...-+.|...|...+..|.+..+.+-|.++..-+. .+ ...-|..+....++....+.
T Consensus 337 ~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~ 416 (625)
T KOG4422|consen 337 NDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDV 416 (625)
T ss_pred HHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555543 111112245567778888888888888887766554 12 22345667777778888888
Q ss_pred HHHHHhhCCC----CChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhcccchhhhHHHHHHHhh
Q 007519 285 AYYLFHNMPD----RDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMK 360 (600)
Q Consensus 285 A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 360 (600)
-...|+.|.. |+..+...++++....|.++-.-+++..+...|..-......-++...++
T Consensus 417 ~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~---------------- 480 (625)
T KOG4422|consen 417 TLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLAR---------------- 480 (625)
T ss_pred HHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhc----------------
Confidence 8888888765 67777777888888888888888888888877644433333333332222
Q ss_pred hcCCCchhHHHHHHHHHHhc-CChHHH-HHHHhcCC--CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCCh--
Q 007519 361 TESESDLILENCLISMYAKC-GVIDNA-YNIFSNMV--SRDLVSWNSMVMGFSHHGLANETLKVFESMLESGT-HPNS-- 433 (600)
Q Consensus 361 ~~~~~~~~~~~~l~~~~~~~-~~~~~A-~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~p~~-- 433 (600)
....|+..--..+-....++ -++.++ ...-.++. .-.....+.++-.+.+.|+.++|.++|.-+...+- -|-.
T Consensus 481 ~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~ 560 (625)
T KOG4422|consen 481 DKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPL 560 (625)
T ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcc
Confidence 22222111000111111100 001111 11111111 23344556666666777777777777776644332 2222
Q ss_pred -hHHHHHHHHhcccCchHHHHHHHHHHHh
Q 007519 434 -VTFLGILSACSHAGLVSRGWELFNAMFD 461 (600)
Q Consensus 434 -~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 461 (600)
....-+++.-.+.++...|..+++-+..
T Consensus 561 lnAm~El~d~a~~~~spsqA~~~lQ~a~~ 589 (625)
T KOG4422|consen 561 LNAMAELMDSAKVSNSPSQAIEVLQLASA 589 (625)
T ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 3333455555666677777777776644
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.52 E-value=3.8e-11 Score=118.16 Aligned_cols=284 Identities=11% Similarity=-0.002 Sum_probs=159.2
Q ss_pred HhcCChhHHHHHHHHHHhhhcCCCCCChhh-HHHHHHHHHhcCChhhHHHHhcccCC--CCc--hhHHHHHHHHHhcCCh
Q 007519 208 AWNGFHKESLLLFIEMKGICDNGNNCNVQS-CNSMINGYIRFGRLEEAQNLFDTVPV--RDE--ISWTSMIDGYLSVGQV 282 (600)
Q Consensus 208 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~--~~~~~l~~~~~~~~~~ 282 (600)
...|+++.|.+.+....+. .|+... +.....+..+.|+.+.|..++....+ |+. .+.......+...|++
T Consensus 95 ~~~g~~~~A~~~l~~~~~~-----~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~ 169 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADH-----AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNEL 169 (409)
T ss_pred HhCCCHHHHHHHHHHHhhc-----CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCH
Confidence 3467777777777666543 444332 33334556666777777777766531 222 1222234555555555
Q ss_pred HHHHHHHhhCCC---CChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhcccchhhhHHHHHHHh
Q 007519 283 SNAYYLFHNMPD---RDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLM 359 (600)
Q Consensus 283 ~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 359 (600)
+.|...++.+.+ .+...+..+...+.+.|++++|.+++..+.+.++.++ ..+..+-.
T Consensus 170 ~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~-~~~~~l~~------------------- 229 (409)
T TIGR00540 170 HAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDD-EEFADLEQ------------------- 229 (409)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCH-HHHHHHHH-------------------
Confidence 555555555443 2334455555555555555555555555555542211 11100000
Q ss_pred hhcCCCchhHHHHHHHHHHhcCChHHHHHHHhcCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHH
Q 007519 360 KTESESDLILENCLISMYAKCGVIDNAYNIFSNMV---SRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTF 436 (600)
Q Consensus 360 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~ 436 (600)
..+..++..-......+.....+.... +.+...+..+...+...|+.++|.+++++..+. .|+....
T Consensus 230 --------~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~ 299 (409)
T TIGR00540 230 --------KAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAI 299 (409)
T ss_pred --------HHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccc
Confidence 001111111111222334444454444 247777778888888888888888888888874 3444321
Q ss_pred ---HHHHHHhcccCchHHHHHHHHHHHhhcCCCC-Cc--chHHHHHHHHhhcCChHHHHHHHHh--C-CCCCCHHHHHHH
Q 007519 437 ---LGILSACSHAGLVSRGWELFNAMFDVYKIQP-GP--EHYVSMINLLGRAGKIKEAEEFVLR--L-PFEPDHRIWGAL 507 (600)
Q Consensus 437 ---~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~--~~~~~l~~~~~~~g~~~~A~~~~~~--~-~~~p~~~~~~~l 507 (600)
..........++.+.+.+.++...+. .| ++ ....+++..+.+.|++++|.+.|++ . ...|+...+..+
T Consensus 300 ~~~~l~~~~~l~~~~~~~~~~~~e~~lk~---~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~L 376 (409)
T TIGR00540 300 SLPLCLPIPRLKPEDNEKLEKLIEKQAKN---VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMA 376 (409)
T ss_pred hhHHHHHhhhcCCCChHHHHHHHHHHHHh---CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHH
Confidence 11112223346677777777777654 44 33 5566778888888888888888873 2 356777776666
Q ss_pred HHHHhhhhCCHHHHHHHHHHHHh
Q 007519 508 LGACGFCEGNAEIAEHAAKRLLE 530 (600)
Q Consensus 508 ~~~~~~~~g~~~~a~~~~~~~~~ 530 (600)
...+. +.|+.++|.+++++.+.
T Consensus 377 a~ll~-~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 377 ADAFD-QAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HHHHH-HcCCHHHHHHHHHHHHH
Confidence 66666 77888888888777655
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.3e-10 Score=114.92 Aligned_cols=230 Identities=14% Similarity=0.204 Sum_probs=160.0
Q ss_pred CCCCCCccchhHHHHHHHhcCChhhHHHHhccCCC----CCcchHHHHHHHHHcCCChhHHHHHhhhcCCCChhhHHHHH
Q 007519 5 NHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQ----RNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMI 80 (600)
Q Consensus 5 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~ 80 (600)
.|-.|+..||.++|..|+..|+.+.|- +|..|.- -+...|+.++.+....++.+.+. +|...+|..|.
T Consensus 19 ~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~aDtyt~Ll 90 (1088)
T KOG4318|consen 19 SGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPLADTYTNLL 90 (1088)
T ss_pred hcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCchhHHHHHH
Confidence 466788899999999999999999998 8888864 34456888888877777777665 57888999999
Q ss_pred HHHHhcCChHH---HHHHhhcCCC---------C-------------CceeHHHHHHHHHHCCChhHHHHHhhcCCC--C
Q 007519 81 CGLADAGRVCE---ARKLFEEMPE---------R-------------NVVSWNSMVVGLIRNGELNEARKVFNSMPI--K 133 (600)
Q Consensus 81 ~~~~~~g~~~~---A~~~~~~~~~---------~-------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~ 133 (600)
.+|.++||... ..+.++.+.. + ....-..++....-.|-++.+++++..++. .
T Consensus 91 ~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~Pvsa~ 170 (1088)
T KOG4318|consen 91 KAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVPVSAW 170 (1088)
T ss_pred HHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCCcccc
Confidence 99999998654 3332221111 0 000122344555666788888888887765 1
Q ss_pred CcccHHHHHHHHHhcCC-HhHHHHHHHhccc-CCchhHHHHHHHHHhcCChhHHHHHHccCCCCCc-----chHHHHHHH
Q 007519 134 NVISWNAMIAGYVECCM-MGEAIVLFEEMEE-RNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNV-----VSWTAMIGG 206 (600)
Q Consensus 134 ~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~li~~ 206 (600)
+. ++..+++-+..... +++-..+.....+ +++.++..+++.-.-.|+.+.|..++..|.+... ..|-.++.
T Consensus 171 ~~-p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g- 248 (1088)
T KOG4318|consen 171 NA-PFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG- 248 (1088)
T ss_pred cc-hHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc-
Confidence 11 22223444443332 3344444444444 8999999999999999999999999999987432 23333333
Q ss_pred HHhcCChhHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHhcCC
Q 007519 207 FAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGR 250 (600)
Q Consensus 207 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 250 (600)
.++...+..+++.|.+. |+.|+..|+...+-.+.++|.
T Consensus 249 ---~~~~q~~e~vlrgmqe~---gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 249 ---INAAQVFEFVLRGMQEK---GVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred ---CccchHHHHHHHHHHHh---cCCCCcchhHHHHHhhhcchh
Confidence 78888899999999987 999999999887776666444
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.7e-10 Score=106.71 Aligned_cols=399 Identities=11% Similarity=0.004 Sum_probs=248.2
Q ss_pred HHHHHHHCCChhHHHHHhhcCCC--CC-cccHHHHHHHHHhcCCHhHHHHHHHhcccCCch---hHHHHHHHHHhcCChh
Q 007519 110 MVVGLIRNGELNEARKVFNSMPI--KN-VISWNAMIAGYVECCMMGEAIVLFEEMEERNVV---TWTSMISGYCRAGEVE 183 (600)
Q Consensus 110 l~~~~~~~~~~~~a~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~ 183 (600)
..+-|.++|.+++|++.|....+ |+ +..|.....+|...|+|+++.+.-...++-++. ++..-..++-..|+++
T Consensus 121 ~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~lg~~~ 200 (606)
T KOG0547|consen 121 KGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHEQLGKFD 200 (606)
T ss_pred hhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhccHH
Confidence 34556778888888888888776 66 677777888888888888888877777764443 3334445666677777
Q ss_pred HHHHHHccCCCCCcchHHHHHHHHHhcCChhH--------HHHHHHHHHhhhcCCCCCChhhHHHHHHHHHhcCChhhHH
Q 007519 184 EGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKE--------SLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQ 255 (600)
Q Consensus 184 ~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~--------a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 255 (600)
+|+.=+ |-.++...+....-.-. |....++-...-...+-|+.....+....+...- -.
T Consensus 201 eal~D~---------tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~----~~ 267 (606)
T KOG0547|consen 201 EALFDV---------TVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADP----KP 267 (606)
T ss_pred HHHHhh---------hHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccc----cc
Confidence 765321 11222222222221111 2222222221001123344444444433332110 00
Q ss_pred HHhcccCCCCchhHHHHHHHH----Hh-cCChHHHHHHHhhCC-------CCC---------hhhHHHHHHHHHhCCChh
Q 007519 256 NLFDTVPVRDEISWTSMIDGY----LS-VGQVSNAYYLFHNMP-------DRD---------AVAWTAMISGLVQNELFV 314 (600)
Q Consensus 256 ~~~~~~~~~~~~~~~~l~~~~----~~-~~~~~~A~~~~~~~~-------~~~---------~~~~~~li~~~~~~g~~~ 314 (600)
. +..+.......+..++ .. ...+..|...+.+-. ..+ ..+.......+.-.|+.-
T Consensus 268 ~----~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~ 343 (606)
T KOG0547|consen 268 L----FDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSL 343 (606)
T ss_pred c----ccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCch
Confidence 0 0000111111111111 11 112333333332211 111 112222222345578899
Q ss_pred HHHHHHHHHHHCCCCCChhHHHHHHHHHhcccchhhhHHHHHHHhhhcCCCchhHHHHHHHHHHhcCChHHHHHHHhcCC
Q 007519 315 EATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMV 394 (600)
Q Consensus 315 ~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 394 (600)
.|..-|+..++....++. .|..+...|....+.++....|..+.+.+.+ ++.+|..-.+.+.-.+++++|..-|++.+
T Consensus 344 ~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~aDF~Kai 421 (606)
T KOG0547|consen 344 GAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAIADFQKAI 421 (606)
T ss_pred hhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999886433332 2666777888999999999999988887655 56677777788888899999999999887
Q ss_pred ---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCCC---
Q 007519 395 ---SRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPG--- 468 (600)
Q Consensus 395 ---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~--- 468 (600)
+.++..|-.+..+.-+.+.+++++..|++.+.. ++.-+..|+.....+...++++.|.+.|+.+++. .|+
T Consensus 422 ~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L---E~~~~~ 497 (606)
T KOG0547|consen 422 SLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL---EPREHL 497 (606)
T ss_pred hcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh---cccccc
Confidence 345566666666777889999999999999885 6666788888999999999999999999999864 443
Q ss_pred ------cchHHHHHHHHhhcCChHHHHHHHHhCC-CCCCH-HHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCC
Q 007519 469 ------PEHYVSMINLLGRAGKIKEAEEFVLRLP-FEPDH-RIWGALLGACGFCEGNAEIAEHAAKRLLELDP 533 (600)
Q Consensus 469 ------~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~-~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p 533 (600)
+.+--.++..- -.+++..|.+++++.. ..|.. ..+..+...-. .+|+.++|+++|++...+-.
T Consensus 498 ~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~l-Q~~~i~eAielFEksa~lAr 568 (606)
T KOG0547|consen 498 IIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELDPKCEQAYETLAQFEL-QRGKIDEAIELFEKSAQLAR 568 (606)
T ss_pred ccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHHHH
Confidence 22222333322 3489999999999874 66754 46777777777 89999999999999887554
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.1e-13 Score=129.29 Aligned_cols=248 Identities=16% Similarity=0.197 Sum_probs=87.6
Q ss_pred HHHHHHHhcCChhhHHHHhcccC-----CCCchhHHHHHHHHHhcCChHHHHHHHhhCCCC---ChhhHHHHHHHHHhCC
Q 007519 240 SMINGYIRFGRLEEAQNLFDTVP-----VRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDR---DAVAWTAMISGLVQNE 311 (600)
Q Consensus 240 ~l~~~~~~~~~~~~a~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g 311 (600)
.+...+.+.|++++|.++++... +.++..|..+.......++++.|...++++... +...+..++.. ...+
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccc
Confidence 34555666666666666664321 223334444444444555555555555554431 12233333333 3445
Q ss_pred ChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhcccchhhhHHHHHHHhhhcCCCchhHHHHHHHHHHhcCChHHHHHHHh
Q 007519 312 LFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFS 391 (600)
Q Consensus 312 ~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 391 (600)
++++|..++....+. . +++..+..++..+...++++++.++++
T Consensus 92 ~~~~A~~~~~~~~~~-----------------------------------~--~~~~~l~~~l~~~~~~~~~~~~~~~l~ 134 (280)
T PF13429_consen 92 DPEEALKLAEKAYER-----------------------------------D--GDPRYLLSALQLYYRLGDYDEAEELLE 134 (280)
T ss_dssp ---------------------------------------------------------------H-HHHTT-HHHHHHHHH
T ss_pred ccccccccccccccc-----------------------------------c--cccchhhHHHHHHHHHhHHHHHHHHHH
Confidence 555555544443332 1 233334455555666666666666665
Q ss_pred cCC-----CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-ChhHHHHHHHHhcccCchHHHHHHHHHHHhhcCC
Q 007519 392 NMV-----SRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHP-NSVTFLGILSACSHAGLVSRGWELFNAMFDVYKI 465 (600)
Q Consensus 392 ~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 465 (600)
.+. +++...|..+...+.+.|+.++|++.+++..+. .| |......++..+...|+.+++.++++...+. .
T Consensus 135 ~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~--~ 210 (280)
T PF13429_consen 135 KLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKA--A 210 (280)
T ss_dssp HHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH---
T ss_pred HHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHH--C
Confidence 532 345666777777777888888888888887774 44 3556667777777888888877777777664 2
Q ss_pred CCCcchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHhhhhCCHHHHHHHHHHHHh
Q 007519 466 QPGPEHYVSMINLLGRAGKIKEAEEFVLRLP-FEP-DHRIWGALLGACGFCEGNAEIAEHAAKRLLE 530 (600)
Q Consensus 466 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~ 530 (600)
..++..+..++.+|...|+.++|...+++.. ..| |+.....+..++. ..|+.++|..+.+++++
T Consensus 211 ~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~-~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 211 PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALE-QAGRKDEALRLRRQALR 276 (280)
T ss_dssp HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT------------------
T ss_pred cCHHHHHHHHHHHhccccccccccccccccccccccccccccccccccc-ccccccccccccccccc
Confidence 3456677778888888888888888887764 344 4555556666666 78888888887777654
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.50 E-value=4e-10 Score=107.71 Aligned_cols=168 Identities=12% Similarity=0.176 Sum_probs=105.9
Q ss_pred hhHHHHHHHHHhcCChHHHHHHhhcCCC-----CCceeHHHHHHHHHHCCChhHHHHHhhcCCCCCcccHHHHHHHHHhc
Q 007519 74 VSWTAMICGLADAGRVCEARKLFEEMPE-----RNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVEC 148 (600)
Q Consensus 74 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~ 148 (600)
..|-..++.+.++|++...+.+|+..+. ....+|...+......+-++.+..++++..+.++..-...+..+++.
T Consensus 103 RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~eeyie~L~~~ 182 (835)
T KOG2047|consen 103 RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREEYIEYLAKS 182 (835)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 4666667777778888888877776654 23346777777777777777888888887776666677777777888
Q ss_pred CCHhHHHHHHHhccc----------CCchhHHHHHHHHHhcCChh---HHHHHHccCCC--CCc--chHHHHHHHHHhcC
Q 007519 149 CMMGEAIVLFEEMEE----------RNVVTWTSMISGYCRAGEVE---EGYCLFRRMPR--KNV--VSWTAMIGGFAWNG 211 (600)
Q Consensus 149 ~~~~~A~~~~~~~~~----------~~~~~~~~l~~~~~~~g~~~---~A~~~~~~~~~--~~~--~~~~~li~~~~~~~ 211 (600)
+++++|.+.+..... .+...|.-+.+..++.-+.- ....+++.+.. +|. ..|++|.+.|.+.|
T Consensus 183 d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g 262 (835)
T KOG2047|consen 183 DRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSG 262 (835)
T ss_pred cchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhh
Confidence 888888777777662 23344555555444433221 23334444433 222 35777777777777
Q ss_pred ChhHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHH
Q 007519 212 FHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYI 246 (600)
Q Consensus 212 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 246 (600)
.+++|.++|++.... .....-|..+.++|+
T Consensus 263 ~~ekarDvyeeai~~-----v~tvrDFt~ifd~Ya 292 (835)
T KOG2047|consen 263 LFEKARDVYEEAIQT-----VMTVRDFTQIFDAYA 292 (835)
T ss_pred hhHHHHHHHHHHHHh-----heehhhHHHHHHHHH
Confidence 777777777777654 333334444444443
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.3e-11 Score=121.39 Aligned_cols=280 Identities=13% Similarity=0.070 Sum_probs=185.8
Q ss_pred HHhcCChhHHHHHHccCCC--CCc-chHHHHHHHHHhcCChhHHHHHHHHHHhhhcCCCCCChh--hHHHHHHHHHhcCC
Q 007519 176 YCRAGEVEEGYCLFRRMPR--KNV-VSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQ--SCNSMINGYIRFGR 250 (600)
Q Consensus 176 ~~~~g~~~~A~~~~~~~~~--~~~-~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~ 250 (600)
....|+++.|.+.+.+..+ |+. ..+-....+....|+++.|.+.+.+..+. .|+.. .-......+...|+
T Consensus 94 a~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~-----~p~~~l~~~~~~a~l~l~~~~ 168 (409)
T TIGR00540 94 KLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAEL-----AGNDNILVEIARTRILLAQNE 168 (409)
T ss_pred HHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCcCchHHHHHHHHHHHHCCC
Confidence 4568999999999988765 333 33455567788899999999999999864 45543 33345778889999
Q ss_pred hhhHHHHhcccC---CCCchhHHHHHHHHHhcCChHHHHHHHhhCCCC---ChhhHHHHH----HHHHhCCChhHHHHHH
Q 007519 251 LEEAQNLFDTVP---VRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDR---DAVAWTAMI----SGLVQNELFVEATYLF 320 (600)
Q Consensus 251 ~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li----~~~~~~g~~~~a~~~~ 320 (600)
++.|...++.+. |.++.+...+...+...|++++|.+.+..+.+. +...+..+- ......+..+...+.+
T Consensus 169 ~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L 248 (409)
T TIGR00540 169 LHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGL 248 (409)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence 999999999887 567778899999999999999999999888753 222221111 1112122222222233
Q ss_pred HHHHHCCCCCChhHHHHHHHHHhcccchhhhHHHHHHHhhhcCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC--CCh
Q 007519 321 MEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVS--RDL 398 (600)
Q Consensus 321 ~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~ 398 (600)
..+.+. .|+ ..+.++..+..+...+...|+.++|.+++++..+ |+.
T Consensus 249 ~~~~~~--~p~------------------------------~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~ 296 (409)
T TIGR00540 249 LNWWKN--QPR------------------------------HRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDD 296 (409)
T ss_pred HHHHHH--CCH------------------------------HHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCc
Confidence 333222 110 0112455556666677777777777777776652 332
Q ss_pred hh---HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChh---HHHHHHHHhcccCchHHHHHHHHHHHhhcCCCCCcchH
Q 007519 399 VS---WNSMVMGFSHHGLANETLKVFESMLESGTHPNSV---TFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHY 472 (600)
Q Consensus 399 ~~---~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~---~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~ 472 (600)
.. ...........++.+.+.+.++...+. .|+.. ...++...+.+.|++++|.+.|+..... ...|+...+
T Consensus 297 ~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~--~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~-~~~p~~~~~ 373 (409)
T TIGR00540 297 RAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN--VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAAC-KEQLDANDL 373 (409)
T ss_pred ccchhHHHHHhhhcCCCChHHHHHHHHHHHHh--CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHh-hcCCCHHHH
Confidence 21 111122233456777788888877764 45444 4456778888889999999988853332 457888788
Q ss_pred HHHHHHHhhcCChHHHHHHHHhC
Q 007519 473 VSMINLLGRAGKIKEAEEFVLRL 495 (600)
Q Consensus 473 ~~l~~~~~~~g~~~~A~~~~~~~ 495 (600)
..++..+.+.|+.++|.+++++.
T Consensus 374 ~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 374 AMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHH
Confidence 88999999999999998888763
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.50 E-value=3e-10 Score=100.74 Aligned_cols=445 Identities=13% Similarity=0.093 Sum_probs=274.0
Q ss_pred HHHHHcCCChhHHHHHhhhcCC----CChhhHHHHHHHHHhcCChHHHHHHhhcCCC---CCceeHHHHHHHHHHCCChh
Q 007519 49 LSGFLQNGRLSEARRLFEEMPE----RNVVSWTAMICGLADAGRVCEARKLFEEMPE---RNVVSWNSMVVGLIRNGELN 121 (600)
Q Consensus 49 ~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~ 121 (600)
+.-+...+++..|+.+++.-.. ....+-..+..++.+.|++++|..++..+.+ ++...+..|+-++.-.|.+.
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~ 108 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYI 108 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHH
Confidence 4555677888999888887664 1224556677888899999999999987765 67778888888888899999
Q ss_pred HHHHHhhcCCCCCcccHHHHHHHHHhcCCHhHHHHHHHhcccCCchhHHHHHHHHHhcCChhHHHHHHccCCCC--Ccch
Q 007519 122 EARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRK--NVVS 199 (600)
Q Consensus 122 ~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~ 199 (600)
+|.++-.+..+ ++-.-..+.....+.++-++-..+.+.+.+.. .--.+|.+.....-.+.+|++++.++... +-..
T Consensus 109 eA~~~~~ka~k-~pL~~RLlfhlahklndEk~~~~fh~~LqD~~-EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~a 186 (557)
T KOG3785|consen 109 EAKSIAEKAPK-TPLCIRLLFHLAHKLNDEKRILTFHSSLQDTL-EDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIA 186 (557)
T ss_pred HHHHHHhhCCC-ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhH-HHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhh
Confidence 99998877743 22233344455567788777776666654322 33445666666667889999999998864 3344
Q ss_pred HHH-HHHHHHhcCChhHHHHHHHHHHhhhcCCCCCC-hhhHHHHHHHHHhc--CChh--hHHHHhcccCCCCchhHHHHH
Q 007519 200 WTA-MIGGFAWNGFHKESLLLFIEMKGICDNGNNCN-VQSCNSMINGYIRF--GRLE--EAQNLFDTVPVRDEISWTSMI 273 (600)
Q Consensus 200 ~~~-li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~--~~~~--~a~~~~~~~~~~~~~~~~~l~ 273 (600)
.|. +.-+|.+..-++-+.++++-..+. .|| +...|..+....+. |+.. +-.++.+.+...-+ .+
T Consensus 187 lNVy~ALCyyKlDYydvsqevl~vYL~q-----~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~-----f~ 256 (557)
T KOG3785|consen 187 LNVYMALCYYKLDYYDVSQEVLKVYLRQ-----FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYP-----FI 256 (557)
T ss_pred hHHHHHHHHHhcchhhhHHHHHHHHHHh-----CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccch-----hH
Confidence 444 344677888888899999888875 444 44445444433332 3221 22222222221111 11
Q ss_pred HHHHh-----cCChHHHHHHHhhCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHH-----h
Q 007519 274 DGYLS-----VGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAA-----G 343 (600)
Q Consensus 274 ~~~~~-----~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~-----~ 343 (600)
.-.++ ...-+.|++++-.+.+.=+.+--.++-.|.++++..+|..+.+++.. ..|-......+..+. .
T Consensus 257 ~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aalGQe~g 334 (557)
T KOG3785|consen 257 EYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAALGQETG 334 (557)
T ss_pred HHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHHhhhhcC
Confidence 22222 23345666666555443333444566668899999999998877643 244444444443322 2
Q ss_pred cccchhhhHHHHHHHhhhcCCCchh-HHHHHHHHHHhcCChHHHHHHHhcCC---CCChhhHHHHHHHHHhcCChHHHHH
Q 007519 344 ATANIDLGRQIHCVLMKTESESDLI-LENCLISMYAKCGVIDNAYNIFSNMV---SRDLVSWNSMVMGFSHHGLANETLK 419 (600)
Q Consensus 344 ~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~ 419 (600)
+......|++.|+.....+...|.. --.++..++.-..++++++.+++.+. ..|-..--.+.++++..|++.+|++
T Consensus 335 SreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEe 414 (557)
T KOG3785|consen 335 SREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEE 414 (557)
T ss_pred cHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHH
Confidence 2334566777777776665544322 22345555555667777777777665 2222223336777778888888888
Q ss_pred HHHHHHHcCCCCChhHHHHH-HHHhcccCchHHHHHHHHHHHhhcCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhCC-
Q 007519 420 VFESMLESGTHPNSVTFLGI-LSACSHAGLVSRGWELFNAMFDVYKIQPG-PEHYVSMINLLGRAGKIKEAEEFVLRLP- 496 (600)
Q Consensus 420 ~~~~m~~~~~~p~~~~~~~l-~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~- 496 (600)
+|-......+ -|..+|.++ .++|.+.+.++.|++++-++-. ..+ ......++.-|.+.+.+--|.+.|+.++
T Consensus 415 lf~~is~~~i-kn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t----~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~ 489 (557)
T KOG3785|consen 415 LFIRISGPEI-KNKILYKSMLARCYIRNKKPQLAWDMMLKTNT----PSERFSLLQLIANDCYKANEFYYAAKAFDELEI 489 (557)
T ss_pred HHhhhcChhh-hhhHHHHHHHHHHHHhcCCchHHHHHHHhcCC----chhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHc
Confidence 8776654332 244555544 4677788888888776654421 112 2233344566777777777777777775
Q ss_pred CCCCHHHHHHHHHHHh
Q 007519 497 FEPDHRIWGALLGACG 512 (600)
Q Consensus 497 ~~p~~~~~~~l~~~~~ 512 (600)
..|++..|..--++|.
T Consensus 490 lDP~pEnWeGKRGACa 505 (557)
T KOG3785|consen 490 LDPTPENWEGKRGACA 505 (557)
T ss_pred cCCCccccCCccchHH
Confidence 6777777766555555
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.47 E-value=4.1e-10 Score=106.20 Aligned_cols=278 Identities=11% Similarity=0.016 Sum_probs=176.7
Q ss_pred CchhHHHHHHHHHhcCChHHHHHHHhhCCCC---ChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHH
Q 007519 265 DEISWTSMIDGYLSVGQVSNAYYLFHNMPDR---DAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGA 341 (600)
Q Consensus 265 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~ 341 (600)
++.......+-+...+++.+..++++.+.+. +...+..-|.++...|+..+-..+=.+|++. .+-...+|-.+.--
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~Y 321 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCY 321 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHH
Confidence 3334444445555566666666666665542 2334444455666666666666666666654 23444566666666
Q ss_pred HhcccchhhhHHHHHHHhhhcCCCchhHHHHHHHHHHhcCChHHHHHHHhcCC---CCChhhHHHHHHHHHhcCChHHHH
Q 007519 342 AGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMV---SRDLVSWNSMVMGFSHHGLANETL 418 (600)
Q Consensus 342 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~ 418 (600)
|...|+.++|++.+.+....+..- ...|-.+...|+-.|.-++|...+.... +.....+--+..-|.+.++.+-|.
T Consensus 322 Yl~i~k~seARry~SKat~lD~~f-gpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe 400 (611)
T KOG1173|consen 322 YLMIGKYSEARRYFSKATTLDPTF-GPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAE 400 (611)
T ss_pred HHHhcCcHHHHHHHHHHhhcCccc-cHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHH
Confidence 666677777777776555443322 2235556666777777777766665443 222222333455577788888888
Q ss_pred HHHHHHHHcCCCCCh-hHHHHHHHHhcccCchHHHHHHHHHHHhhcC-CCC----CcchHHHHHHHHhhcCChHHHHHHH
Q 007519 419 KVFESMLESGTHPNS-VTFLGILSACSHAGLVSRGWELFNAMFDVYK-IQP----GPEHYVSMINLLGRAGKIKEAEEFV 492 (600)
Q Consensus 419 ~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~p----~~~~~~~l~~~~~~~g~~~~A~~~~ 492 (600)
+.|.+... +-|+. ..++-+.-.....+.+.+|..+|+.....-. ..+ -..+++.|+.+|.+.+++++|+..+
T Consensus 401 ~Ff~~A~a--i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~ 478 (611)
T KOG1173|consen 401 KFFKQALA--IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYY 478 (611)
T ss_pred HHHHHHHh--cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHH
Confidence 88888775 45544 4455554445567888888888887763211 111 2335788899999999999999999
Q ss_pred HhCC-CCC-CHHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCCcHHHHhHHHH
Q 007519 493 LRLP-FEP-DHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYA 547 (600)
Q Consensus 493 ~~~~-~~p-~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 547 (600)
++.. ..| +..++.++.-.+. ..|+.+.|+..|.+++.++|++..+-..|..+..
T Consensus 479 q~aL~l~~k~~~~~asig~iy~-llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie 534 (611)
T KOG1173|consen 479 QKALLLSPKDASTHASIGYIYH-LLGNLDKAIDHFHKALALKPDNIFISELLKLAIE 534 (611)
T ss_pred HHHHHcCCCchhHHHHHHHHHH-HhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 8864 444 5566777777777 8899999999999999999977666666665543
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.47 E-value=4.1e-10 Score=106.74 Aligned_cols=445 Identities=11% Similarity=0.094 Sum_probs=252.2
Q ss_pred CCCCCCCCCCc-cchhHHHHHHHhcCChhhHHHHhccCCC--C-CcchHHHHHHHHHcCCChhHHHHHhhhcCCCChhhH
Q 007519 1 MSERNHPKSLV-VHLTSSITKYSKRGFIDEAKALFQLMPQ--R-NVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSW 76 (600)
Q Consensus 1 ~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 76 (600)
|++...+..+. ..+-+-+..+...|++++|.+...++.. | +..++..-+-++.+.+.+++|+++.+.-..-+....
T Consensus 1 ms~~~~~~~~~~~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~ 80 (652)
T KOG2376|consen 1 MSKEKSGGSDNLEALLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINS 80 (652)
T ss_pred CCCcccCCcccHHHHHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcch
Confidence 55554444332 4455677888999999999999999875 3 456788888899999999999988877653221111
Q ss_pred HHHHHHH--HhcCChHHHHHHhhcCCCCCceeHHHHHHHHHHCCChhHHHHHhhcCCCCCcccHHHHHHHH-HhcCCHhH
Q 007519 77 TAMICGL--ADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGY-VECCMMGE 153 (600)
Q Consensus 77 ~~l~~~~--~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~ 153 (600)
-.+=.+| .+.++.++|+..++...+.+..+...-...+.+.|++++|+++|+++.+.+...+...+.+- ...+-.-.
T Consensus 81 ~~fEKAYc~Yrlnk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~ 160 (652)
T KOG2376|consen 81 FFFEKAYCEYRLNKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQ 160 (652)
T ss_pred hhHHHHHHHHHcccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhh
Confidence 1123344 58899999999999666666667888889999999999999999999876665555555432 22222222
Q ss_pred HHHHHHhcccCCchhHHHHHH---HHHhcCChhHHHHHHccCC--------CCC-----cc-----hHHHHHHHHHhcCC
Q 007519 154 AIVLFEEMEERNVVTWTSMIS---GYCRAGEVEEGYCLFRRMP--------RKN-----VV-----SWTAMIGGFAWNGF 212 (600)
Q Consensus 154 A~~~~~~~~~~~~~~~~~l~~---~~~~~g~~~~A~~~~~~~~--------~~~-----~~-----~~~~li~~~~~~~~ 212 (600)
+. +.+........+|..+.+ .+...|++.+|+++++... ..| +. .-..+...+...|+
T Consensus 161 ~~-~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gq 239 (652)
T KOG2376|consen 161 VQ-LLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQ 239 (652)
T ss_pred HH-HHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcc
Confidence 22 344443333445554443 4567899999999998772 111 11 12344556778899
Q ss_pred hhHHHHHHHHHHhhhcCCCCCChhhHHHHHH---HHHhcCCh-h-hHHHHhcccCCC---------------CchhHHHH
Q 007519 213 HKESLLLFIEMKGICDNGNNCNVQSCNSMIN---GYIRFGRL-E-EAQNLFDTVPVR---------------DEISWTSM 272 (600)
Q Consensus 213 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~~~~-~-~a~~~~~~~~~~---------------~~~~~~~l 272 (600)
-++|..++...++. ..+|........+ +.....++ + .++..++..... ....-+.+
T Consensus 240 t~ea~~iy~~~i~~----~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~l 315 (652)
T KOG2376|consen 240 TAEASSIYVDIIKR----NPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNAL 315 (652)
T ss_pred hHHHHHHHHHHHHh----cCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999875 3444433222222 12222221 2 111122211100 01111122
Q ss_pred HHHHHhcCChHHHHHHHhhCCCCC-hhhHHHHHH-HH-HhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhcccchh
Q 007519 273 IDGYLSVGQVSNAYYLFHNMPDRD-AVAWTAMIS-GL-VQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANID 349 (600)
Q Consensus 273 ~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~li~-~~-~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~ 349 (600)
+..| .+.-+.+.++-..+.... ...+.+++. ++ ++...+..+.+++...-+....-+..+....+......|+++
T Consensus 316 L~l~--tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~ 393 (652)
T KOG2376|consen 316 LALF--TNKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPE 393 (652)
T ss_pred HHHH--hhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHH
Confidence 2222 344455555555544422 122333332 22 222246666666666555421112234444555667777888
Q ss_pred hhHHHHH--------HHhhhcCCCchhHHHHHHHHHHhcCChHHHHHHHhcCC------CCC----hhhHHHHHHHHHhc
Q 007519 350 LGRQIHC--------VLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMV------SRD----LVSWNSMVMGFSHH 411 (600)
Q Consensus 350 ~a~~~~~--------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~------~~~----~~~~~~l~~~~~~~ 411 (600)
.|.+++. .+.+.+..| .+...++..+.+.++-+.|..++.+.. .+. ..++.-....-.+.
T Consensus 394 ~A~~il~~~~~~~~ss~~~~~~~P--~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~ 471 (652)
T KOG2376|consen 394 VALEILSLFLESWKSSILEAKHLP--GTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRH 471 (652)
T ss_pred HHHHHHHHHhhhhhhhhhhhccCh--hHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhc
Confidence 8877777 344444433 333456666666666555555554443 111 12233333444556
Q ss_pred CChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccCchHHHHHHH
Q 007519 412 GLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELF 456 (600)
Q Consensus 412 ~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 456 (600)
|+.++|..+++++.+.. +++..+...++.+|++. +.+.|..+-
T Consensus 472 G~~~ea~s~leel~k~n-~~d~~~l~~lV~a~~~~-d~eka~~l~ 514 (652)
T KOG2376|consen 472 GNEEEASSLLEELVKFN-PNDTDLLVQLVTAYARL-DPEKAESLS 514 (652)
T ss_pred CchHHHHHHHHHHHHhC-CchHHHHHHHHHHHHhc-CHHHHHHHh
Confidence 66677777777766642 55556666666666543 344444443
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.47 E-value=4e-09 Score=101.03 Aligned_cols=282 Identities=12% Similarity=0.148 Sum_probs=163.6
Q ss_pred hHHHHHHHHHhcCChHHHHHHHhhCCCCCh-------hhHHHHHHHHHhCCChhHHHHHHHHHHHCCCC-----------
Q 007519 268 SWTSMIDGYLSVGQVSNAYYLFHNMPDRDA-------VAWTAMISGLVQNELFVEATYLFMEMRAHGVP----------- 329 (600)
Q Consensus 268 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-------~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~----------- 329 (600)
.|..+...|-..|+++.|..+|++...-+- .+|-.....=.+..+++.|+.+++.....--.
T Consensus 389 Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~p 468 (835)
T KOG2047|consen 389 LWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEP 468 (835)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCc
Confidence 466677777777777777777777655221 23444444445566677777766655422100
Q ss_pred ------CChhHHHHHHHHHhcccchhhhHHHHHHHhhhcCCCchhHHHHHHHHHHhcCChHHHHHHHhcCC----CCCh-
Q 007519 330 ------PLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMV----SRDL- 398 (600)
Q Consensus 330 ------p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~- 398 (600)
-+...|...+..--..|-++....+++.+....+-....+ -.....+-...-++++.++|++-+ .|++
T Consensus 469 vQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii-~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~ 547 (835)
T KOG2047|consen 469 VQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQII-INYAMFLEEHKYFEESFKAYERGISLFKWPNVY 547 (835)
T ss_pred HHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHH-HHHHHHHHhhHHHHHHHHHHHcCCccCCCccHH
Confidence 1122344444444566778888888888888766433222 223334556677899999999876 3444
Q ss_pred hhHHHHHHHHHh---cCChHHHHHHHHHHHHcCCCCChhHHHHHH--HHhcccCchHHHHHHHHHHHhhcCCCCC--cch
Q 007519 399 VSWNSMVMGFSH---HGLANETLKVFESMLESGTHPNSVTFLGIL--SACSHAGLVSRGWELFNAMFDVYKIQPG--PEH 471 (600)
Q Consensus 399 ~~~~~l~~~~~~---~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~--~~~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~ 471 (600)
..|+..+.-+.+ ....+.|..+|++..+ |.+|...-+..|+ ..-.+-|....|..+++++.. ++.+. ...
T Consensus 548 diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~--~v~~a~~l~m 624 (835)
T KOG2047|consen 548 DIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS--AVKEAQRLDM 624 (835)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCHHHHHHH
Confidence 477777665544 2357899999999998 7887664333333 223455888889999998875 44442 445
Q ss_pred HHHHHHHHhhcCChHHHHHHHHhCC-CCCCHHHHHHHHH--HHhhhhCCHHHHHHHHHHHHhhC-CC-CCCcHHHHhHHH
Q 007519 472 YVSMINLLGRAGKIKEAEEFVLRLP-FEPDHRIWGALLG--ACGFCEGNAEIAEHAAKRLLELD-PL-NAPAHVVLCNIY 546 (600)
Q Consensus 472 ~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~~--~~~~~~g~~~~a~~~~~~~~~~~-p~-~~~~~~~l~~~~ 546 (600)
|+..+.--...=-...-..++++.. .-|+..+-...+. -.-.+.|..+.|..+|.-.-++. |. ++..+...=..-
T Consensus 625 yni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FE 704 (835)
T KOG2047|consen 625 YNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFE 704 (835)
T ss_pred HHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHH
Confidence 6665543322211222233333321 2244443332222 12226788888888887777753 32 334455555556
Q ss_pred HhhCCcH
Q 007519 547 AASGRHV 553 (600)
Q Consensus 547 ~~~g~~~ 553 (600)
.+.|+-+
T Consensus 705 vrHGned 711 (835)
T KOG2047|consen 705 VRHGNED 711 (835)
T ss_pred HhcCCHH
Confidence 6777743
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.47 E-value=4.6e-11 Score=104.60 Aligned_cols=265 Identities=13% Similarity=0.151 Sum_probs=161.1
Q ss_pred cCChhHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHhcCChhhHHHHhcccCCCCch-------hHHHHHHHHHhcCCh
Q 007519 210 NGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEI-------SWTSMIDGYLSVGQV 282 (600)
Q Consensus 210 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-------~~~~l~~~~~~~~~~ 282 (600)
..+.++|.+.|-+|.+. .+-+..+-.+|.+.|.+.|..|.|+.+...+...... ....|..-|...|-+
T Consensus 48 s~Q~dKAvdlF~e~l~~----d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~ 123 (389)
T COG2956 48 SNQPDKAVDLFLEMLQE----DPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLL 123 (389)
T ss_pred hcCcchHHHHHHHHHhc----CchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhh
Confidence 46778888888888763 2233445566777777888888888887777633222 233455666777777
Q ss_pred HHHHHHHhhCCCCC---hhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhcccchhhhHHHHHHHh
Q 007519 283 SNAYYLFHNMPDRD---AVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLM 359 (600)
Q Consensus 283 ~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 359 (600)
|.|+.+|..+.+.+ ..+...|+..|....+|++|++.-+++.+.|-.+...- |
T Consensus 124 DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~e----I-------------------- 179 (389)
T COG2956 124 DRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVE----I-------------------- 179 (389)
T ss_pred hHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhH----H--------------------
Confidence 77777777766522 23555667777777777777777777766543332111 1
Q ss_pred hhcCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHH
Q 007519 360 KTESESDLILENCLISMYAKCGVIDNAYNIFSNMVS---RDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTF 436 (600)
Q Consensus 360 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~ 436 (600)
...|.-|...+....+++.|..++.+... ..+..--.+.......|++++|++.|+...+.+..--..+.
T Consensus 180 -------AqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl 252 (389)
T COG2956 180 -------AQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVL 252 (389)
T ss_pred -------HHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHH
Confidence 12234455555556666677776666652 22333334556677777777777777777765433334555
Q ss_pred HHHHHHhcccCchHHHHHHHHHHHhhcCCCCCcchHHHHHHHHhhcCChHHHHHHH-HhCCCCCCHHHHHHHHHHHh
Q 007519 437 LGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFV-LRLPFEPDHRIWGALLGACG 512 (600)
Q Consensus 437 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~-~~~~~~p~~~~~~~l~~~~~ 512 (600)
..|..+|.+.|+.++....+.++.+. .+.+..-..+...-....-.+.|...+ +.+..+|+...+..++..-.
T Consensus 253 ~~L~~~Y~~lg~~~~~~~fL~~~~~~---~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l 326 (389)
T COG2956 253 EMLYECYAQLGKPAEGLNFLRRAMET---NTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHL 326 (389)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHc---cCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhh
Confidence 66667777777777777777777653 445555555555544444445554444 33456677777666666543
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.44 E-value=5.2e-10 Score=101.30 Aligned_cols=282 Identities=12% Similarity=0.030 Sum_probs=182.4
Q ss_pred cCChhHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHhcCChhhHHHHhcccCCC--C--chhHHHHHHHHHhcCChHHH
Q 007519 210 NGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVR--D--EISWTSMIDGYLSVGQVSNA 285 (600)
Q Consensus 210 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~--~~~~~~l~~~~~~~~~~~~A 285 (600)
.|++.+|++...+..+. +..| ...|..-..+....|+.+.+-.++.++.++ | ..+.-+........|+.+.|
T Consensus 97 eG~~~qAEkl~~rnae~---~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA 172 (400)
T COG3071 97 EGDFQQAEKLLRRNAEH---GEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAA 172 (400)
T ss_pred cCcHHHHHHHHHHhhhc---Ccch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhH
Confidence 57888888877776643 2222 223444445556677777777777776533 2 23344455556666666666
Q ss_pred HHHHhhCCC---CChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhcccchhhhHHHHHHHhhhc
Q 007519 286 YYLFHNMPD---RDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTE 362 (600)
Q Consensus 286 ~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 362 (600)
..-++++.+ .++........+|.+.|++.....++..|.+.|+-.++..-.
T Consensus 173 ~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~-------------------------- 226 (400)
T COG3071 173 RENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAAR-------------------------- 226 (400)
T ss_pred HHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHH--------------------------
Confidence 655554433 455666666666777777777777777666666443322110
Q ss_pred CCCchhHHHHHHHHHHhcCChHHHHHHHhcCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHH
Q 007519 363 SESDLILENCLISMYAKCGVIDNAYNIFSNMV---SRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGI 439 (600)
Q Consensus 363 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 439 (600)
....+++.+++-....+..+.-...++..+ +.++..-..++.-+.+.|+.++|.++..+..+++..|+ ...
T Consensus 227 --le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~ 300 (400)
T COG3071 227 --LEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCR 300 (400)
T ss_pred --HHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHH
Confidence 012344555555555556666666677666 44566667777888888888888888888888777776 222
Q ss_pred HHHhcccCchHHHHHHHHHHHhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHhhhhCCH
Q 007519 440 LSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRL-PFEPDHRIWGALLGACGFCEGNA 518 (600)
Q Consensus 440 ~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~g~~ 518 (600)
.-.+.+.++...-++..+...+.++.. +..+.+|+..|.+.+.|.+|.+.|+.. ...|+..+|+.+..++. ..|+.
T Consensus 301 ~~~~l~~~d~~~l~k~~e~~l~~h~~~--p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~-~~g~~ 377 (400)
T COG3071 301 LIPRLRPGDPEPLIKAAEKWLKQHPED--PLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALD-QLGEP 377 (400)
T ss_pred HHhhcCCCCchHHHHHHHHHHHhCCCC--hhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHH-HcCCh
Confidence 334566777777777777666653433 467778888888888888888888765 37778888888888887 88888
Q ss_pred HHHHHHHHHHHh
Q 007519 519 EIAEHAAKRLLE 530 (600)
Q Consensus 519 ~~a~~~~~~~~~ 530 (600)
+.|.+..++.+-
T Consensus 378 ~~A~~~r~e~L~ 389 (400)
T COG3071 378 EEAEQVRREALL 389 (400)
T ss_pred HHHHHHHHHHHH
Confidence 888877777665
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.8e-09 Score=102.55 Aligned_cols=453 Identities=11% Similarity=0.062 Sum_probs=252.1
Q ss_pred HHHHHhcCChHHHHHHhhcCCC---CCceeHHHHHHHHHHCCChhHHHHHhhcCCCCCc--ccHHHHHHHHHhcCCHhHH
Q 007519 80 ICGLADAGRVCEARKLFEEMPE---RNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNV--ISWNAMIAGYVECCMMGEA 154 (600)
Q Consensus 80 ~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~A 154 (600)
++.+...|++++|.+...+++. .+...+..-+-++++.+.|++|+.+.+.-..... ..+..-.-+..+.+..++|
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrlnk~Dea 98 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRLNKLDEA 98 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHcccHHHH
Confidence 4556677888888888888776 3455677777788888999999877766543121 1112223334477888888
Q ss_pred HHHHHhcccCCchhHHHHHHHHHhcCChhHHHHHHccCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhhhcCCCCCC
Q 007519 155 IVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCN 234 (600)
Q Consensus 155 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 234 (600)
.+.++-..+.+..+...-...+.+.|++++|..+|+.+.+.+...+..-+.+-+..--.....++.+.. ...|
T Consensus 99 lk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v------~~v~- 171 (652)
T KOG2376|consen 99 LKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSV------PEVP- 171 (652)
T ss_pred HHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhc------cCCC-
Confidence 888885555555566666777888888888888888887665555544443322111000111111111 1122
Q ss_pred hhhHHHHHH---HHHhcCChhhHHHHhcccCCCCchhHHHHHHHHHhcCChHHHHHHHhhCCCCCh-hhHHHHHHHHHhC
Q 007519 235 VQSCNSMIN---GYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDA-VAWTAMISGLVQN 310 (600)
Q Consensus 235 ~~~~~~l~~---~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~li~~~~~~ 310 (600)
..+|..+.+ .+...|++.+|+++++....-.-. .+ ..++.. -.++- ... ..--.+...+...
T Consensus 172 e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e-------~l-~~~d~~-eEeie-----~el~~IrvQlayVlQ~~ 237 (652)
T KOG2376|consen 172 EDSYELLYNTACILIENGKYNQAIELLEKALRICRE-------KL-EDEDTN-EEEIE-----EELNPIRVQLAYVLQLQ 237 (652)
T ss_pred cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH-------hh-cccccc-hhhHH-----HHHHHHHHHHHHHHHHh
Confidence 334444433 344677777777777655200000 00 000000 00000 000 1122344556677
Q ss_pred CChhHHHHHHHHHHHCCCCCChhHHHHHHH---HHhcccchhh--hHHHHH-----------HHhhhcCCCchhHHHHHH
Q 007519 311 ELFVEATYLFMEMRAHGVPPLNATFSVLFG---AAGATANIDL--GRQIHC-----------VLMKTESESDLILENCLI 374 (600)
Q Consensus 311 g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~---~~~~~~~~~~--a~~~~~-----------~~~~~~~~~~~~~~~~l~ 374 (600)
|+..+|..+|...++.. ++|........+ +.....++.. +...++ .............-+.++
T Consensus 238 Gqt~ea~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL 316 (652)
T KOG2376|consen 238 GQTAEASSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALL 316 (652)
T ss_pred cchHHHHHHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888777777764 444432222221 2211111111 000000 001111111122223444
Q ss_pred HHHHhcCChHHHHHHHhcCCCCC-hhhHHHHHHH-H-HhcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHhcccCchH
Q 007519 375 SMYAKCGVIDNAYNIFSNMVSRD-LVSWNSMVMG-F-SHHGLANETLKVFESMLESGTHPN-SVTFLGILSACSHAGLVS 450 (600)
Q Consensus 375 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~l~~~-~-~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~ 450 (600)
..|. +..+.+.++........ ...+.+++.. . ++...+.++.+++....+.. +-+ .......+......|+++
T Consensus 317 ~l~t--nk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~-p~~s~~v~L~~aQl~is~gn~~ 393 (652)
T KOG2376|consen 317 ALFT--NKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGH-PEKSKVVLLLRAQLKISQGNPE 393 (652)
T ss_pred HHHh--hhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccC-CchhHHHHHHHHHHHHhcCCHH
Confidence 4443 45567777777776333 2334444433 2 22335778888888877642 222 344455566778899999
Q ss_pred HHHHHHH--------HHHhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhCC--------CCCCHHHHHHHHHHHhhh
Q 007519 451 RGWELFN--------AMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLP--------FEPDHRIWGALLGACGFC 514 (600)
Q Consensus 451 ~a~~~~~--------~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~p~~~~~~~l~~~~~~~ 514 (600)
.|.+++. .+.+ +.-.+.+..++...+.+.++.+.|..++++.. ..+...........+-.+
T Consensus 394 ~A~~il~~~~~~~~ss~~~---~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr 470 (652)
T KOG2376|consen 394 VALEILSLFLESWKSSILE---AKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLR 470 (652)
T ss_pred HHHHHHHHHhhhhhhhhhh---hccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHh
Confidence 9999998 3332 22345577778888888888777777766542 222222222222233237
Q ss_pred hCCHHHHHHHHHHHHhhCCCCCCcHHHHhHHHHhhCCcHHHHHHHHH
Q 007519 515 EGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMD 561 (600)
Q Consensus 515 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 561 (600)
.|+.++|..+++++++.+|++..+...++.+|.+. +.+.|..+-+.
T Consensus 471 ~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~-d~eka~~l~k~ 516 (652)
T KOG2376|consen 471 HGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARL-DPEKAESLSKK 516 (652)
T ss_pred cCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhc-CHHHHHHHhhc
Confidence 79999999999999999999999999999998776 45677665543
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.4e-10 Score=100.22 Aligned_cols=292 Identities=15% Similarity=0.139 Sum_probs=202.4
Q ss_pred hHHHHHHHHHhcCChhhHHHHhcccCCCCchh---HHHHHHHHHhcCChHHHHHHHhhCCC-CChh------hHHHHHHH
Q 007519 237 SCNSMINGYIRFGRLEEAQNLFDTVPVRDEIS---WTSMIDGYLSVGQVSNAYYLFHNMPD-RDAV------AWTAMISG 306 (600)
Q Consensus 237 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~------~~~~li~~ 306 (600)
.|..=++.+ -.++.++|..+|-+|...|+.+ .-+|.+.|.+.|..+.|+++-+.+.+ ||.. +...|..-
T Consensus 38 ~Yv~GlNfL-Ls~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~D 116 (389)
T COG2956 38 DYVKGLNFL-LSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRD 116 (389)
T ss_pred HHHhHHHHH-hhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHH
Confidence 344444433 3467899999999988665554 45788899999999999999988766 5432 44556777
Q ss_pred HHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhcccchhhhHHHHHHHhhhcCCCchhHHHHHHHHHHhcCChHHH
Q 007519 307 LVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNA 386 (600)
Q Consensus 307 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 386 (600)
|...|-+|+|..+|..+.+.| .--...... |+..|-...+|++|
T Consensus 117 ym~aGl~DRAE~~f~~L~de~-efa~~Alqq-----------------------------------Ll~IYQ~treW~KA 160 (389)
T COG2956 117 YMAAGLLDRAEDIFNQLVDEG-EFAEGALQQ-----------------------------------LLNIYQATREWEKA 160 (389)
T ss_pred HHHhhhhhHHHHHHHHHhcch-hhhHHHHHH-----------------------------------HHHHHHHhhHHHHH
Confidence 888899999999999888754 112223333 44455555555555
Q ss_pred HHHHhcCCCCCh--------hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHH-HHHHHhcccCchHHHHHHHH
Q 007519 387 YNIFSNMVSRDL--------VSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFL-GILSACSHAGLVSRGWELFN 457 (600)
Q Consensus 387 ~~~~~~~~~~~~--------~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~-~l~~~~~~~g~~~~a~~~~~ 457 (600)
.++-+++.+-+. ..|.-+...+....+.+.|..++.+..+. .|+.+--+ .+.+.....|+++.|.+.++
T Consensus 161 Id~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa--~~~cvRAsi~lG~v~~~~g~y~~AV~~~e 238 (389)
T COG2956 161 IDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQA--DKKCVRASIILGRVELAKGDYQKAVEALE 238 (389)
T ss_pred HHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh--CccceehhhhhhHHHHhccchHHHHHHHH
Confidence 555444432111 13344556666778999999999999875 45443333 44577889999999999999
Q ss_pred HHHhhcCCCCC--cchHHHHHHHHhhcCChHHHHHHHHhCC-CCCCHHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCC
Q 007519 458 AMFDVYKIQPG--PEHYVSMINLLGRAGKIKEAEEFVLRLP-FEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPL 534 (600)
Q Consensus 458 ~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~ 534 (600)
.+.+. +|+ +.+...|..+|...|+.++...++.++. ..+.......+..... .....+.|...+.+-+...|
T Consensus 239 ~v~eQ---n~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~l~l~~lie-~~~G~~~Aq~~l~~Ql~r~P- 313 (389)
T COG2956 239 RVLEQ---NPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGADAELMLADLIE-LQEGIDAAQAYLTRQLRRKP- 313 (389)
T ss_pred HHHHh---ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccHHHHHHHHHH-HhhChHHHHHHHHHHHhhCC-
Confidence 99876 454 7788899999999999999999998864 4555555454444444 55667778888888888999
Q ss_pred CCCcHHHHhHHHHh---hCCcHHHHHHHHHHhhcCCccCCC
Q 007519 535 NAPAHVVLCNIYAA---SGRHVEEHKLRMDMGLKGVRKVPG 572 (600)
Q Consensus 535 ~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~ 572 (600)
+...+..++..... -|+..+....++.|....++..|.
T Consensus 314 t~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l~~~~~ 354 (389)
T COG2956 314 TMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQLRRKPR 354 (389)
T ss_pred cHHHHHHHHHhhhccccccchhhhHHHHHHHHHHHHhhcCC
Confidence 77777777776543 345566666777777666666663
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.42 E-value=3.3e-11 Score=109.98 Aligned_cols=198 Identities=13% Similarity=0.080 Sum_probs=162.9
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHhcCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHH
Q 007519 366 DLILENCLISMYAKCGVIDNAYNIFSNMV---SRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSA 442 (600)
Q Consensus 366 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 442 (600)
....+..+...+...|++++|...+++.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+...
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 35566778888999999999999998775 4456788888899999999999999999998763 4455667777888
Q ss_pred hcccCchHHHHHHHHHHHhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHhhhhCCHHH
Q 007519 443 CSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLP-FEP-DHRIWGALLGACGFCEGNAEI 520 (600)
Q Consensus 443 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~g~~~~ 520 (600)
+...|++++|.+.++++.+..........+..++..+...|++++|.+.+++.. ..| +...+..+...+. ..|++++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~-~~~~~~~ 187 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYY-LRGQYKD 187 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHH-HcCCHHH
Confidence 899999999999999998642222245677788999999999999999998864 344 4556777777777 8999999
Q ss_pred HHHHHHHHHhhCCCCCCcHHHHhHHHHhhCCcHHHHHHHHHHhhc
Q 007519 521 AEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLK 565 (600)
Q Consensus 521 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 565 (600)
|...++++.+..|.++..+..++.++...|+.++|..+.+.+.+.
T Consensus 188 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 188 ARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 999999999998888888889999999999999999988776543
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.38 E-value=6.4e-10 Score=100.71 Aligned_cols=276 Identities=12% Similarity=0.062 Sum_probs=177.6
Q ss_pred cCChHHHHHHHhhCCC---CChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhcccchhhhHHHH
Q 007519 279 VGQVSNAYYLFHNMPD---RDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIH 355 (600)
Q Consensus 279 ~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 355 (600)
.|++.+|++...+-.+ .....|..-+.+-.+.|+.+.+-.++.+..+.--.++..............|+.+.|..-.
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 3555555555544333 1223344444455555666666666665555322333333444444555556666665555
Q ss_pred HHHhhhcCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCC-----------ChhhHHHHHHHHHhcCChHHHHHHHHHH
Q 007519 356 CVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSR-----------DLVSWNSMVMGFSHHGLANETLKVFESM 424 (600)
Q Consensus 356 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----------~~~~~~~l~~~~~~~~~~~~a~~~~~~m 424 (600)
..+.+.+.. .+.+.....++|.+.|++.....++.++.+. ...+|+.++.-....+..+.-...|+..
T Consensus 177 ~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~ 255 (400)
T COG3071 177 DQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ 255 (400)
T ss_pred HHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence 555554433 3444555666666666666666666665422 1246777777776667677766777776
Q ss_pred HHcCCCCChhHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHH
Q 007519 425 LESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRL-PFEP-DHR 502 (600)
Q Consensus 425 ~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~ 502 (600)
-.. .+.++..-.+++.-+.+.|+.++|.++.+...++ ..+|. ...++ ...+-++.+.-++..++. ...| ++.
T Consensus 256 pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~-~~D~~---L~~~~-~~l~~~d~~~l~k~~e~~l~~h~~~p~ 329 (400)
T COG3071 256 PRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKR-QWDPR---LCRLI-PRLRPGDPEPLIKAAEKWLKQHPEDPL 329 (400)
T ss_pred cHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHh-ccChh---HHHHH-hhcCCCCchHHHHHHHHHHHhCCCChh
Confidence 554 4556666777888889999999999999999886 55555 22222 234555555544444442 1222 335
Q ss_pred HHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCCcHHHHhHHHHhhCCcHHHHHHHHHHh
Q 007519 503 IWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMG 563 (600)
Q Consensus 503 ~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 563 (600)
.+..+...|. +.+.+.+|..+++.+++..| +...|..++.++.+.|+..+|.+.+++..
T Consensus 330 L~~tLG~L~~-k~~~w~kA~~~leaAl~~~~-s~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 330 LLSTLGRLAL-KNKLWGKASEALEAALKLRP-SASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred HHHHHHHHHH-HhhHHHHHHHHHHHHHhcCC-ChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 6677777788 99999999999999999999 99999999999999999999999777655
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.9e-08 Score=97.89 Aligned_cols=282 Identities=15% Similarity=0.138 Sum_probs=132.7
Q ss_pred hHHHHHHHhcCChhhHHHHhccCCCCCcchHHHHHHHHHcCCChhHHHHHhhhc--CCCChhhHHHHHHHHHhcCChHHH
Q 007519 15 TSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM--PERNVVSWTAMICGLADAGRVCEA 92 (600)
Q Consensus 15 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A 92 (600)
.+.+++++..|.-++|-++-+ .+-. -.+-|..|.+.|.+..|.+....= +..|......+..++.+..-+++|
T Consensus 593 ~sy~q~l~dt~qd~ka~elk~----sdgd-~laaiqlyika~~p~~a~~~a~n~~~l~~de~il~~ia~alik~elydka 667 (1636)
T KOG3616|consen 593 RSYLQALMDTGQDEKAAELKE----SDGD-GLAAIQLYIKAGKPAKAARAALNDEELLADEEILEHIAAALIKGELYDKA 667 (1636)
T ss_pred HHHHHHHHhcCchhhhhhhcc----ccCc-cHHHHHHHHHcCCchHHHHhhcCHHHhhccHHHHHHHHHHHHhhHHHHhh
Confidence 345556666666555544321 1111 123455666666666665543211 124445555555555555556666
Q ss_pred HHHhhcCCCCCceeHHHHHHHHHHCCChhHHHHHhhcCCCCCc---------------------------ccHHHHHHHH
Q 007519 93 RKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNV---------------------------ISWNAMIAGY 145 (600)
Q Consensus 93 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---------------------------~~~~~l~~~~ 145 (600)
-++|+++..++.. +.+|-+-.-+-+|+++.+-.....+ ......+.+.
T Consensus 668 gdlfeki~d~dka-----le~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~~~~kaieaa 742 (1636)
T KOG3616|consen 668 GDLFEKIHDFDKA-----LECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANCLIKAIEAA 742 (1636)
T ss_pred hhHHHHhhCHHHH-----HHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhHHHHHHHH
Confidence 6666655543321 2333333333344443332221110 1111222333
Q ss_pred HhcCCHhHHHHHHHhcccCCc--hhHHHHHHHHHhcCChhHHHHHHccCCCCCcchHHHHHHHHHhcCChhHHHHHHHHH
Q 007519 146 VECCMMGEAIVLFEEMEERNV--VTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEM 223 (600)
Q Consensus 146 ~~~~~~~~A~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 223 (600)
.....|.+|..+++.+...++ .-|..+.+.|+..|+++.|.++|.+.. .++..|..|.+.|+|+.|.++-.+.
T Consensus 743 i~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~-----~~~dai~my~k~~kw~da~kla~e~ 817 (1636)
T KOG3616|consen 743 IGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEAD-----LFKDAIDMYGKAGKWEDAFKLAEEC 817 (1636)
T ss_pred hhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcc-----hhHHHHHHHhccccHHHHHHHHHHh
Confidence 344555555555555543222 234555556666666666666654332 2344455566666666666655544
Q ss_pred HhhhcCCCCCChhhHHHHHHHHHhcCChhhHHHHhcccCCCCchhHHHHHHHHHhcCChHHHHHHHhhCCC-CChhhHHH
Q 007519 224 KGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPD-RDAVAWTA 302 (600)
Q Consensus 224 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~ 302 (600)
. |.......|..-..-+-+.|++.+|+++|-.+..|+. .|.+|-+.|..+..+++..+-.. .-..+...
T Consensus 818 ~-----~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~-----aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~ 887 (1636)
T KOG3616|consen 818 H-----GPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDK-----AIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKH 887 (1636)
T ss_pred c-----CchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchH-----HHHHHHhhCcchHHHHHHHHhChhhhhHHHHH
Confidence 4 3333444444444445555666666666555554443 24455555555555555544332 11123333
Q ss_pred HHHHHHhCCChhHHHHHHH
Q 007519 303 MISGLVQNELFVEATYLFM 321 (600)
Q Consensus 303 li~~~~~~g~~~~a~~~~~ 321 (600)
+..-|-..|+...|...|-
T Consensus 888 f~~e~e~~g~lkaae~~fl 906 (1636)
T KOG3616|consen 888 FAKELEAEGDLKAAEEHFL 906 (1636)
T ss_pred HHHHHHhccChhHHHHHHH
Confidence 4444444555555544443
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.34 E-value=7.6e-09 Score=102.80 Aligned_cols=492 Identities=13% Similarity=0.047 Sum_probs=262.6
Q ss_pred CCCCcchHHHHHHHHHcCCChhHHHHHhhhcCCC----ChhhHHHHHHHHHhcCChHHHHHHhhcCCCCCceeHHHHHHH
Q 007519 38 PQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPER----NVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVG 113 (600)
Q Consensus 38 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~ 113 (600)
..||..+|.++|.-||..|+++.|- +|..|.-. +...++.++.+..+.++.+.+. +|...+|..|..+
T Consensus 21 i~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~aDtyt~Ll~a 92 (1088)
T KOG4318|consen 21 ILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPLADTYTNLLKA 92 (1088)
T ss_pred CCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCchhHHHHHHHH
Confidence 3589999999999999999999999 88888753 3457888888877888877665 7888999999999
Q ss_pred HHHCCChhHHHHHhhc----CCC---C----C---------------cccHHHHHHHHHhcCCHhHHHHHHHhccc---C
Q 007519 114 LIRNGELNEARKVFNS----MPI---K----N---------------VISWNAMIAGYVECCMMGEAIVLFEEMEE---R 164 (600)
Q Consensus 114 ~~~~~~~~~a~~~~~~----~~~---~----~---------------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~ 164 (600)
|.+.||... ++..++ +.. + . ...-..++......|-++.+.+++..+.. .
T Consensus 93 yr~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~Pvsa~~ 171 (1088)
T KOG4318|consen 93 YRIHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVPVSAWN 171 (1088)
T ss_pred HHhccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCCccccc
Confidence 999999875 222222 111 0 0 00111222233334555555555554431 1
Q ss_pred CchhHHHHHHHHHh-cCChhHHHHHHccCCC-CCcchHHHHHHHHHhcCChhHHHHHHHHHHhhhcCCCCCChhhHHHHH
Q 007519 165 NVVTWTSMISGYCR-AGEVEEGYCLFRRMPR-KNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMI 242 (600)
Q Consensus 165 ~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~ 242 (600)
.+... ++.-+.. ...+++-..+-+...+ +++.+|..++..-...|+.+.|..++.+|.+. |++.+..-|..|+
T Consensus 172 ~p~~v--fLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~---gfpir~HyFwpLl 246 (1088)
T KOG4318|consen 172 APFQV--FLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEK---GFPIRAHYFWPLL 246 (1088)
T ss_pred chHHH--HHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHc---CCCcccccchhhh
Confidence 11111 1221111 1123333333333333 67778888888888888888888888888866 7777777666665
Q ss_pred HHHHhcCChhhHHHHhcccC----CCCchhHHHHHHHHHhcCChHHHHHHHhhCCCCChhhHHHHHHHHHhCC-----C-
Q 007519 243 NGYIRFGRLEEAQNLFDTVP----VRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNE-----L- 312 (600)
Q Consensus 243 ~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g-----~- 312 (600)
-+ .++...++.+++.|. .|+..|+...+-.+.+.|+...+... .+....+++-...-+-.| +
T Consensus 247 ~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~-----sq~~hg~tAavrsaa~rg~~a~k~l 318 (1088)
T KOG4318|consen 247 LG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEG-----SQLAHGFTAAVRSAACRGLLANKRL 318 (1088)
T ss_pred hc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccc-----cchhhhhhHHHHHHHhcccHhHHHH
Confidence 44 555555555555554 56666666666555555543222211 122222222222222222 1
Q ss_pred ----hhHHHHHHHHHHHCCCCCChhHHHHHHHHHhcccchhhhHHHHHHHhhhcCC---CchhHHHHHHHHHHhcCChHH
Q 007519 313 ----FVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESE---SDLILENCLISMYAKCGVIDN 385 (600)
Q Consensus 313 ----~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~ 385 (600)
..-.+..+.+..-.|+.....+|...... ...|.-+.+.++-..+...... .++..|..++.
T Consensus 319 ~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~l-~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lr---------- 387 (1088)
T KOG4318|consen 319 RQNLRKSVIGSTKKLFLLGTDILEAIWSMCEKL-RHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLR---------- 387 (1088)
T ss_pred HHHHHHHHHHHhhHHHHhccccchHHHHHHHHH-HHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHH----------
Confidence 11122223333333433333333333322 2245555555555444332211 12222322222
Q ss_pred HHHHHhcCCCCChhhHHHHHHHHHh---cC------------ChHHHHHHHHHHHHcC----CCC-------ChhHHHHH
Q 007519 386 AYNIFSNMVSRDLVSWNSMVMGFSH---HG------------LANETLKVFESMLESG----THP-------NSVTFLGI 439 (600)
Q Consensus 386 A~~~~~~~~~~~~~~~~~l~~~~~~---~~------------~~~~a~~~~~~m~~~~----~~p-------~~~~~~~l 439 (600)
++|.+...+..........+... .. +...+...+..+.... ..| =...-+.+
T Consensus 388 --qyFrr~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql 465 (1088)
T KOG4318|consen 388 --QYFRRIERHICSRIYYAGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQL 465 (1088)
T ss_pred --HHHHHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHH
Confidence 23333322211110001111111 11 1111111111111100 001 01123344
Q ss_pred HHHhcccCchHHHHHHHHHHHhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhCC-----CCCCHHHHHHHHHHHhhh
Q 007519 440 LSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLP-----FEPDHRIWGALLGACGFC 514 (600)
Q Consensus 440 ~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~p~~~~~~~l~~~~~~~ 514 (600)
+..|+..-+..++...-+..... - - +..|..|+..+....+.+.|..+.++.. ..-+..-+..+..... +
T Consensus 466 ~l~l~se~n~lK~l~~~ekye~~-l-f--~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~-r 540 (1088)
T KOG4318|consen 466 HLTLNSEYNKLKILCDEEKYEDL-L-F--AGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQ-R 540 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-H-h--hhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHH-H
Confidence 45555555566665544444331 1 1 2678889999999999999999888875 2234455666666666 7
Q ss_pred hCCHHHHHHHHHHHHhh---CCCCCCcHHHHhHHHHhhCCcHHHHHHHHHHhhcCCcc
Q 007519 515 EGNAEIAEHAAKRLLEL---DPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRK 569 (600)
Q Consensus 515 ~g~~~~a~~~~~~~~~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 569 (600)
.+....+..+++...+. .|....+...+.......|+.+.-.++.+.+...|+..
T Consensus 541 ~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~e 598 (1088)
T KOG4318|consen 541 LAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSE 598 (1088)
T ss_pred hHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhh
Confidence 77888888888877762 33334555566666677888887777888888877766
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.34 E-value=6.7e-09 Score=94.30 Aligned_cols=273 Identities=10% Similarity=-0.029 Sum_probs=173.1
Q ss_pred CCCchhHHHHHHHHHhcCChHHHHHHHhhCCCCChhh---HHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHH
Q 007519 263 VRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVA---WTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLF 339 (600)
Q Consensus 263 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~ 339 (600)
+.+......+.+.+...|+.++|+..|++...-|+.+ .......+.+.|++++...+...+.... .-....|..-.
T Consensus 229 r~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~ 307 (564)
T KOG1174|consen 229 RCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHA 307 (564)
T ss_pred CccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhh
Confidence 3444555555555555555555555555544322221 1222223455666666666655555431 11111111112
Q ss_pred HHHhcccchhhhHHHHHHHhhhcCCCchhHHHHHHHHHHhcCChHHHHHHHhcCC---CCChhhHHHHHHHHHhcCChHH
Q 007519 340 GAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMV---SRDLVSWNSMVMGFSHHGLANE 416 (600)
Q Consensus 340 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~ 416 (600)
.......+.+.|..+-.+..+.+.. +...+-.-..++...|+.++|.-.|+... +-+...|..|+.+|...|++.+
T Consensus 308 ~~l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kE 386 (564)
T KOG1174|consen 308 QLLYDEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKE 386 (564)
T ss_pred hhhhhhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHH
Confidence 2223344555555555544443322 23333334456677888888888888765 4577899999999999999999
Q ss_pred HHHHHHHHHHcCCCCChhHHHHHH-HHhc-ccCchHHHHHHHHHHHhhcCCCCC-cchHHHHHHHHhhcCChHHHHHHHH
Q 007519 417 TLKVFESMLESGTHPNSVTFLGIL-SACS-HAGLVSRGWELFNAMFDVYKIQPG-PEHYVSMINLLGRAGKIKEAEEFVL 493 (600)
Q Consensus 417 a~~~~~~m~~~~~~p~~~~~~~l~-~~~~-~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~ 493 (600)
|..+-+..... ++.+..+...+. ..|. ...--++|..++++.. .+.|+ ....+.+++.+...|+.+++..+++
T Consensus 387 A~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L---~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe 462 (564)
T KOG1174|consen 387 ANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSL---KINPIYTPAVNLIAELCQVEGPTKDIIKLLE 462 (564)
T ss_pred HHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhh---ccCCccHHHHHHHHHHHHhhCccchHHHHHH
Confidence 98887776654 445555555442 3333 2334578889888876 45775 6677888999999999999999998
Q ss_pred hCC-CCCCHHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCCcHHHH
Q 007519 494 RLP-FEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVL 542 (600)
Q Consensus 494 ~~~-~~p~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 542 (600)
+.. ..||....+.+...+. ..+.+.+|...|..++.++|++..+...+
T Consensus 463 ~~L~~~~D~~LH~~Lgd~~~-A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl 511 (564)
T KOG1174|consen 463 KHLIIFPDVNLHNHLGDIMR-AQNEPQKAMEYYYKALRQDPKSKRTLRGL 511 (564)
T ss_pred HHHhhccccHHHHHHHHHHH-HhhhHHHHHHHHHHHHhcCccchHHHHHH
Confidence 864 6788888888888888 88999999999999999999665554443
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.27 E-value=3e-08 Score=88.32 Aligned_cols=439 Identities=10% Similarity=0.038 Sum_probs=253.6
Q ss_pred HHHHHhcCChhhHHHHhccCCCCC--c--chHHHHHHHHHcCCChhHHHHHhhhcCC---CChhhHHHHHHHHHhcCChH
Q 007519 18 ITKYSKRGFIDEAKALFQLMPQRN--V--VSYNAMLSGFLQNGRLSEARRLFEEMPE---RNVVSWTAMICGLADAGRVC 90 (600)
Q Consensus 18 ~~~~~~~g~~~~A~~~~~~~~~~~--~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~ 90 (600)
+.-+....++..|+.+++.-..-+ . .+-.-+..++...|++++|...|+.+.+ ++...+-.|.-++.-.|.+.
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~ 108 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYI 108 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHH
Confidence 666777889999999998765411 1 2233456777889999999999998875 55566666766667789999
Q ss_pred HHHHHhhcCCCCCceeHHHHHHHHHHCCChhHHHHHhhcCCCCCcccHHHHHHHHHhcCCHhHHHHHHHhccc--CCchh
Q 007519 91 EARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEE--RNVVT 168 (600)
Q Consensus 91 ~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~ 168 (600)
+|..+-.+..+ ++-.-..+...-.+.|+-++-..+.+.+.+.. ..-.+|.......-.+.+|++++..... |+-..
T Consensus 109 eA~~~~~ka~k-~pL~~RLlfhlahklndEk~~~~fh~~LqD~~-EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~a 186 (557)
T KOG3785|consen 109 EAKSIAEKAPK-TPLCIRLLFHLAHKLNDEKRILTFHSSLQDTL-EDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIA 186 (557)
T ss_pred HHHHHHhhCCC-ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhH-HHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhh
Confidence 99988876654 22223344555566777776666655554322 3344555555556678888888888774 33333
Q ss_pred HHH-HHHHHHhcCChhHHHHHHccCCC--CC-cchHHHHHHHHHhcCChhHHHHHHHHHHhhhcCCCCCChhhHHHHHHH
Q 007519 169 WTS-MISGYCRAGEVEEGYCLFRRMPR--KN-VVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMING 244 (600)
Q Consensus 169 ~~~-l~~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 244 (600)
.+. +.-+|.+..-++-+.++++--.+ || ..+-|...-...+.=.-..|.+-.+++... +.. . | ..+.-
T Consensus 187 lNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN---~~~-~---~-~f~~~ 258 (557)
T KOG3785|consen 187 LNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADN---IDQ-E---Y-PFIEY 258 (557)
T ss_pred hHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhc---ccc-c---c-hhHHH
Confidence 343 33345666666666666554432 32 223333332222322223333333333321 111 0 1 11111
Q ss_pred HHh-----cCChhhHHHHhcccCCCCchhHHHHHHHHHhcCChHHHHHHHhhCCCCChhhHHHHHHHHHhCC-------C
Q 007519 245 YIR-----FGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNE-------L 312 (600)
Q Consensus 245 ~~~-----~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g-------~ 312 (600)
+++ ..+-+.|++++-.+...=+...-.|+--|.+.+++.+|..+..++...++.-|-.-.-.++..| .
T Consensus 259 l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreH 338 (557)
T KOG3785|consen 259 LCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSREH 338 (557)
T ss_pred HHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHH
Confidence 222 2334566666655554445555556666777777777777777665433332222111222222 2
Q ss_pred hhHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhcccchhhhHHHHHHHhhhcCCCchhHHHHHHHHHHhcCChHHHHHHHh
Q 007519 313 FVEATYLFMEMRAHGVPPLN-ATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFS 391 (600)
Q Consensus 313 ~~~a~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 391 (600)
..-|.+.|+..-..+..-|. ..-.++..++.-...++.+.-++..+...-...|...+ .+.++++..|++.+|+++|-
T Consensus 339 lKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~ 417 (557)
T KOG3785|consen 339 LKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAKLATGNYVEAEELFI 417 (557)
T ss_pred HHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHHHHhcChHHHHHHHh
Confidence 33455555544444433222 12233344445555667777666666655444455444 47788888899999999988
Q ss_pred cCCCCC---hhhHH-HHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHH-HHHhcccCchHHHHHHHHHHHhhcCCC
Q 007519 392 NMVSRD---LVSWN-SMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGI-LSACSHAGLVSRGWELFNAMFDVYKIQ 466 (600)
Q Consensus 392 ~~~~~~---~~~~~-~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l-~~~~~~~g~~~~a~~~~~~~~~~~~~~ 466 (600)
.+..|+ ..+|. .+..+|.+.+.++-|+.++-++. -+.+..+...+ ..-|.+.+.+=-|-+.|..+. ..+
T Consensus 418 ~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~---t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE---~lD 491 (557)
T KOG3785|consen 418 RISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKTN---TPSERFSLLQLIANDCYKANEFYYAAKAFDELE---ILD 491 (557)
T ss_pred hhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcC---CchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHH---ccC
Confidence 887543 34554 45677888888888877765543 23333444443 366777888777777777765 347
Q ss_pred CCcchHH
Q 007519 467 PGPEHYV 473 (600)
Q Consensus 467 p~~~~~~ 473 (600)
|++..|.
T Consensus 492 P~pEnWe 498 (557)
T KOG3785|consen 492 PTPENWE 498 (557)
T ss_pred CCccccC
Confidence 7777664
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.26 E-value=5.7e-10 Score=93.44 Aligned_cols=161 Identities=20% Similarity=0.191 Sum_probs=126.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCC-CcchHHHHHHH
Q 007519 401 WNSMVMGFSHHGLANETLKVFESMLESGTHPN-SVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQP-GPEHYVSMINL 478 (600)
Q Consensus 401 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~ 478 (600)
...+...|...|+...|..-+++..+. .|+ ..++..+...|.+.|..+.|.+.|+++.. +.| +-.+.|..+..
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~--DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls---l~p~~GdVLNNYG~F 112 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEH--DPSYYLAHLVRAHYYQKLGENDLADESYRKALS---LAPNNGDVLNNYGAF 112 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHh---cCCCccchhhhhhHH
Confidence 344566788888888888888888875 444 45677777778888888888888888874 467 57788888888
Q ss_pred HhhcCChHHHHHHHHhCCCCCC----HHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCCcHHHHhHHHHhhCCcHH
Q 007519 479 LGRAGKIKEAEEFVLRLPFEPD----HRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVE 554 (600)
Q Consensus 479 ~~~~g~~~~A~~~~~~~~~~p~----~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 554 (600)
+|..|++++|...|++....|. ..+|.++..+.. +.|+.+.|...++++++.+|+++.....+.......|++-.
T Consensus 113 LC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal-~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~ 191 (250)
T COG3063 113 LCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCAL-KAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAP 191 (250)
T ss_pred HHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHh-hcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchH
Confidence 8888888888888888754443 456666666666 88888888888888888888888888888888888888888
Q ss_pred HHHHHHHHhhcCC
Q 007519 555 EHKLRMDMGLKGV 567 (600)
Q Consensus 555 A~~~~~~~~~~~~ 567 (600)
|..+++.....+.
T Consensus 192 Ar~~~~~~~~~~~ 204 (250)
T COG3063 192 ARLYLERYQQRGG 204 (250)
T ss_pred HHHHHHHHHhccc
Confidence 8887777666554
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.6e-08 Score=97.89 Aligned_cols=122 Identities=23% Similarity=0.191 Sum_probs=79.0
Q ss_pred HHHHHHhcccCchHHHHHHHHHHHhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhCC-CCCC-HHHHHHHHHHHhh
Q 007519 437 LGILSACSHAGLVSRGWELFNAMFDVYKIQP-GPEHYVSMINLLGRAGKIKEAEEFVLRLP-FEPD-HRIWGALLGACGF 513 (600)
Q Consensus 437 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~ 513 (600)
......+...+..++|..++.++.. +.| ....|...+..+...|.+++|.+.|.... ..|+ +....++...+.
T Consensus 654 llaa~~~~~~~~~~~a~~CL~Ea~~---~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~ll- 729 (799)
T KOG4162|consen 654 LLAADLFLLSGNDDEARSCLLEASK---IDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLL- 729 (799)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHh---cchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHH-
Confidence 3344455566666666666666553 334 45566666667777777777777766653 5554 345555555555
Q ss_pred hhCCHHHHHH--HHHHHHhhCCCCCCcHHHHhHHHHhhCCcHHHHHHHHHH
Q 007519 514 CEGNAEIAEH--AAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDM 562 (600)
Q Consensus 514 ~~g~~~~a~~--~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 562 (600)
..|+...|.. ++..+++++|.++.+|..|+.++...|+.+.|.+.+...
T Consensus 730 e~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa 780 (799)
T KOG4162|consen 730 ELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAA 780 (799)
T ss_pred HhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHH
Confidence 6776666666 777777778877788888888877778877777755543
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.5e-10 Score=100.10 Aligned_cols=188 Identities=14% Similarity=0.086 Sum_probs=101.6
Q ss_pred HHHHHHhcCChHHHHHHHhcCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccCch
Q 007519 373 LISMYAKCGVIDNAYNIFSNMV---SRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLV 449 (600)
Q Consensus 373 l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~ 449 (600)
|...|.+.+++..|+.+|.+.. +-|+....-+...+-..++.++|.++++...+.. +.+.....++...|...++.
T Consensus 262 LskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~P 340 (478)
T KOG1129|consen 262 LSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNP 340 (478)
T ss_pred HHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCCh
Confidence 3344444444444444444433 1222223334444555555666666666655532 33344444444555555666
Q ss_pred HHHHHHHHHHHhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhCC---CCCC--HHHHHHHHHHHhhhhCCHHHHHHH
Q 007519 450 SRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLP---FEPD--HRIWGALLGACGFCEGNAEIAEHA 524 (600)
Q Consensus 450 ~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~p~--~~~~~~l~~~~~~~~g~~~~a~~~ 524 (600)
+.|.++++++... |+ .++..|+.++-+|.-.+++|-++.-|++.. ..|+ ..+|.++..... ..||...|.+.
T Consensus 341 E~AlryYRRiLqm-G~-~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV-~iGD~nlA~rc 417 (478)
T KOG1129|consen 341 EMALRYYRRILQM-GA-QSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAV-TIGDFNLAKRC 417 (478)
T ss_pred HHHHHHHHHHHHh-cC-CChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEE-eccchHHHHHH
Confidence 6666666666554 32 244556666666666666666665555542 1222 345555555555 56666666666
Q ss_pred HHHHHhhCCCCCCcHHHHhHHHHhhCCcHHHHHHHHHHhh
Q 007519 525 AKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGL 564 (600)
Q Consensus 525 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 564 (600)
|+-++..+|++...++.|+-.-.+.|++++|..++...+.
T Consensus 418 frlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 418 FRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred HHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 6666666666666666666666666666666666655443
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.5e-07 Score=91.75 Aligned_cols=246 Identities=16% Similarity=0.172 Sum_probs=153.8
Q ss_pred HHHHhcCChHHHHHHHhhCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhcccchhhhHH
Q 007519 274 DGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQ 353 (600)
Q Consensus 274 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~ 353 (600)
..+...|+++.|+..|-+... .-..+.+-....+|.+|+.+++.++.+. .-..-|..+...|+..|+++.|.+
T Consensus 714 ~hl~~~~q~daainhfiea~~-----~~kaieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~ 786 (1636)
T KOG3616|consen 714 DHLEQIGQLDAAINHFIEANC-----LIKAIEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEE 786 (1636)
T ss_pred HHHHHHHhHHHHHHHHHHhhh-----HHHHHHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHH
Confidence 344455666666655544321 1223445566778888888888777653 334456667778888888888888
Q ss_pred HHHHHhhhcCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCC--hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 007519 354 IHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRD--LVSWNSMVMGFSHHGLANETLKVFESMLESGTHP 431 (600)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p 431 (600)
+|.+. ..++-.|.+|.+.|+|+.|.++-.+...|. +..|-+-..-+-.+|++.+|.+++-... .|
T Consensus 787 lf~e~---------~~~~dai~my~k~~kw~da~kla~e~~~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p 853 (1636)
T KOG3616|consen 787 LFTEA---------DLFKDAIDMYGKAGKWEDAFKLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EP 853 (1636)
T ss_pred HHHhc---------chhHHHHHHHhccccHHHHHHHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----Cc
Confidence 87542 234566778888888888888887776553 3445555555677888888887775542 44
Q ss_pred ChhHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 007519 432 NSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGAC 511 (600)
Q Consensus 432 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~ 511 (600)
+. .+..|-+.|..+..+++.++-.. ..-..+...+..-|...|+...|..-|-+.. .|...++.|
T Consensus 854 ~~-----aiqmydk~~~~ddmirlv~k~h~----d~l~dt~~~f~~e~e~~g~lkaae~~flea~------d~kaavnmy 918 (1636)
T KOG3616|consen 854 DK-----AIQMYDKHGLDDDMIRLVEKHHG----DHLHDTHKHFAKELEAEGDLKAAEEHFLEAG------DFKAAVNMY 918 (1636)
T ss_pred hH-----HHHHHHhhCcchHHHHHHHHhCh----hhhhHHHHHHHHHHHhccChhHHHHHHHhhh------hHHHHHHHh
Confidence 43 35667778888877777664421 1113456667788888888888888776554 455566666
Q ss_pred hhhhCCHHHHHHHHHHHHhhCCCCCCcHHHHhHHHHhhCCcHHHHHHHH
Q 007519 512 GFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRM 560 (600)
Q Consensus 512 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 560 (600)
. .++-+++|-++.+. ....|..-+....|+-.--| +.|.+++.
T Consensus 919 k-~s~lw~dayriakt---egg~n~~k~v~flwaksigg--daavklln 961 (1636)
T KOG3616|consen 919 K-ASELWEDAYRIAKT---EGGANAEKHVAFLWAKSIGG--DAAVKLLN 961 (1636)
T ss_pred h-hhhhHHHHHHHHhc---cccccHHHHHHHHHHHhhCc--HHHHHHHH
Confidence 6 66777766655432 22334444444444433334 46676554
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.24 E-value=3.1e-10 Score=99.51 Aligned_cols=236 Identities=11% Similarity=0.059 Sum_probs=196.6
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhcccchhhhHHHHHHHhhhcCCCchhHHHHHHHHHHh
Q 007519 300 WTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAK 379 (600)
Q Consensus 300 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 379 (600)
-+.+.++|.+.|-+.+|...|+.-++. .|-..||..|-++|.+...+..|..++..-.+. ++-++-........+..
T Consensus 226 k~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 226 KQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHH
Confidence 467889999999999999999998886 677889999999999999999999999876653 23345555567778888
Q ss_pred cCChHHHHHHHhcCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccCchHHHHHHH
Q 007519 380 CGVIDNAYNIFSNMV---SRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELF 456 (600)
Q Consensus 380 ~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 456 (600)
.++.++|.++|+... +.++.....+...|.-.++++-|+..++++.+.|+ -+...|+.+.-+|...+++|-++..|
T Consensus 303 m~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred HHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchhhhHHHH
Confidence 899999999999886 44666677777888899999999999999999984 56677888999999999999999999
Q ss_pred HHHHhhcCCCCC--cchHHHHHHHHhhcCChHHHHHHHHhCC-CCCC-HHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhC
Q 007519 457 NAMFDVYKIQPG--PEHYVSMINLLGRAGKIKEAEEFVLRLP-FEPD-HRIWGALLGACGFCEGNAEIAEHAAKRLLELD 532 (600)
Q Consensus 457 ~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~ 532 (600)
+++... ...|+ ..+|..|.......|++.-|.+.|+-.. ..|+ ...++++.-.-. +.|++++|..++..+..+.
T Consensus 382 ~RAlst-at~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~-r~G~i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 382 QRALST-ATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAA-RSGDILGARSLLNAAKSVM 459 (478)
T ss_pred HHHHhh-ccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHh-hcCchHHHHHHHHHhhhhC
Confidence 999875 44454 7789999999999999999999998865 4444 567888877777 9999999999999999999
Q ss_pred CCCCCcHHH
Q 007519 533 PLNAPAHVV 541 (600)
Q Consensus 533 p~~~~~~~~ 541 (600)
|+-......
T Consensus 460 P~m~E~~~N 468 (478)
T KOG1129|consen 460 PDMAEVTTN 468 (478)
T ss_pred ccccccccc
Confidence 954444333
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.5e-08 Score=101.90 Aligned_cols=278 Identities=12% Similarity=0.056 Sum_probs=157.1
Q ss_pred HHHHHHhhCCC---CChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhcccchhhhHHHHHHHhh
Q 007519 284 NAYYLFHNMPD---RDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMK 360 (600)
Q Consensus 284 ~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 360 (600)
.|+..+....+ .+...||.|.-. ...|.+.-+...|-+-... -+....+|..+--.|....+++.|...+.....
T Consensus 801 ~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~s-ep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qS 878 (1238)
T KOG1127|consen 801 TAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFS-EPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQS 878 (1238)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhc-cccchhheeccceeEEecccHHHhhHHHHhhhh
Confidence 44455544332 455566655544 4445666665555544433 133445566666666677777888777776665
Q ss_pred hcCCCchhHHHHHHHHHHhcCChHHHHHHHhcCC--------CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHc-----
Q 007519 361 TESESDLILENCLISMYAKCGVIDNAYNIFSNMV--------SRDLVSWNSMVMGFSHHGLANETLKVFESMLES----- 427 (600)
Q Consensus 361 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----- 427 (600)
..+. +...+-.........|+.-++..+|..-. -++..-|-.........|+.++-+..-+++-..
T Consensus 879 LdP~-nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~ 957 (1238)
T KOG1127|consen 879 LDPL-NLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALS 957 (1238)
T ss_pred cCch-hhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHH
Confidence 4332 22223222223334566666666665421 234444444444455666655544433332211
Q ss_pred ----CCCCChhHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCCCcchHH----HHHHHHhhcCChHHHHHHHHhCCCCC
Q 007519 428 ----GTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYV----SMINLLGRAGKIKEAEEFVLRLPFEP 499 (600)
Q Consensus 428 ----~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~----~l~~~~~~~g~~~~A~~~~~~~~~~p 499 (600)
|.+.....|........+.+.+..|.+...++..-.....+...|+ .+.+.+...|.++.|...+.......
T Consensus 958 ~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a~~~~~~ev 1037 (1238)
T KOG1127|consen 958 YYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKASWKEWMEV 1037 (1238)
T ss_pred HHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhhhcccchhH
Confidence 3344456676666666677777776666665543222233444444 56677888899998888877766444
Q ss_pred CHHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCC---cHHHHhHHHHhhCCcHHHHH-HHHHHhhcC
Q 007519 500 DHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAP---AHVVLCNIYAASGRHVEEHK-LRMDMGLKG 566 (600)
Q Consensus 500 ~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~A~~-~~~~~~~~~ 566 (600)
+......-+..+ -.|+++++...|++++.+.-++.. ....++......|..+.|.. +++...-.+
T Consensus 1038 dEdi~gt~l~lF--fkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe~~~ls~ 1106 (1238)
T KOG1127|consen 1038 DEDIRGTDLTLF--FKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFEVKSLSK 1106 (1238)
T ss_pred HHHHhhhhHHHH--HHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHHHHHHHHhCc
Confidence 444444333333 478999999999999997654443 34455555667778888888 555444333
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.7e-09 Score=109.26 Aligned_cols=244 Identities=12% Similarity=0.004 Sum_probs=169.4
Q ss_pred ChhHHHHHHHHHHHCCCCCChh-HHHHHHHHHh---------cccchhhhHHHHHHHhhhcCCCchhHHHHHHHHHHhcC
Q 007519 312 LFVEATYLFMEMRAHGVPPLNA-TFSVLFGAAG---------ATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCG 381 (600)
Q Consensus 312 ~~~~a~~~~~~m~~~g~~p~~~-~~~~l~~~~~---------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 381 (600)
..++|+..|++..+. .|+.. .+..+..++. ..++.+.|...++.+.+.... +...+..+...+...|
T Consensus 276 ~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~-~~~a~~~lg~~~~~~g 352 (553)
T PRK12370 276 SLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHN-NPQALGLLGLINTIHS 352 (553)
T ss_pred HHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcc
Confidence 356778888877764 45443 3333333322 234467888888877776543 5666777888888999
Q ss_pred ChHHHHHHHhcCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChh-HHHHHHHHhcccCchHHHHHHHH
Q 007519 382 VIDNAYNIFSNMV---SRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSV-TFLGILSACSHAGLVSRGWELFN 457 (600)
Q Consensus 382 ~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~ 457 (600)
++++|...|++.. +.+...+..+..++...|++++|+..+++..+. .|+.. .+..++..+...|++++|...++
T Consensus 353 ~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l--~P~~~~~~~~~~~~~~~~g~~eeA~~~~~ 430 (553)
T PRK12370 353 EYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKL--DPTRAAAGITKLWITYYHTGIDDAIRLGD 430 (553)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHhccCHHHHHHHHH
Confidence 9999999999876 445678888899999999999999999999875 55543 33334445666899999999999
Q ss_pred HHHhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhCC-CCCCHHHHHH-HHHHHhhhhCCHHHHHHHHHHHHhhCCC
Q 007519 458 AMFDVYKIQP-GPEHYVSMINLLGRAGKIKEAEEFVLRLP-FEPDHRIWGA-LLGACGFCEGNAEIAEHAAKRLLELDPL 534 (600)
Q Consensus 458 ~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~-l~~~~~~~~g~~~~a~~~~~~~~~~~p~ 534 (600)
++... ..| ++..+..++.+|...|++++|...+.++. ..|+...... +...+. ..| +.|...++++++..-.
T Consensus 431 ~~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g--~~a~~~l~~ll~~~~~ 505 (553)
T PRK12370 431 ELRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYC-QNS--ERALPTIREFLESEQR 505 (553)
T ss_pred HHHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHh-ccH--HHHHHHHHHHHHHhhH
Confidence 98764 235 45567888999999999999999998875 5565554444 444445 555 4777777777763322
Q ss_pred CCCcHHHHhHHHHhhCCcHHHHHHHHHHhhcC
Q 007519 535 NAPAHVVLCNIYAASGRHVEEHKLRMDMGLKG 566 (600)
Q Consensus 535 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 566 (600)
.+.....+..++.-.|+-+.+..+ +.+.+.|
T Consensus 506 ~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 506 IDNNPGLLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred hhcCchHHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 222223366667778887777777 6665543
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.2e-09 Score=106.45 Aligned_cols=191 Identities=19% Similarity=0.217 Sum_probs=140.6
Q ss_pred HHHHHHHhcCChHHHHHHHhcCC-------CC----ChhhHHHHHHHHHhcCChHHHHHHHHHHHHc-----CCC-CCh-
Q 007519 372 CLISMYAKCGVIDNAYNIFSNMV-------SR----DLVSWNSMVMGFSHHGLANETLKVFESMLES-----GTH-PNS- 433 (600)
Q Consensus 372 ~l~~~~~~~~~~~~A~~~~~~~~-------~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-----~~~-p~~- 433 (600)
.+...|...+++.+|..+|+++. .+ -..+++.|..+|...|++++|..+++...+- |.. |..
T Consensus 246 ~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~ 325 (508)
T KOG1840|consen 246 ILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVA 325 (508)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHH
Confidence 45667777788877777777664 11 2346677777888888888887777765432 212 222
Q ss_pred hHHHHHHHHhcccCchHHHHHHHHHHHhhcC--CCCC----cchHHHHHHHHhhcCChHHHHHHHHhCC---------CC
Q 007519 434 VTFLGILSACSHAGLVSRGWELFNAMFDVYK--IQPG----PEHYVSMINLLGRAGKIKEAEEFVLRLP---------FE 498 (600)
Q Consensus 434 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~---------~~ 498 (600)
..++.+...|...+++++|..++++..+.+. +.++ ..+++.|+..|...|++++|.++++++. ..
T Consensus 326 ~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~ 405 (508)
T KOG1840|consen 326 AQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKD 405 (508)
T ss_pred HHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcC
Confidence 2355666788899999999999988776543 2222 5678999999999999999999998863 22
Q ss_pred CC-HHHHHHHHHHHhhhhCCHHHHHHHHHHHHh----hCCCCC---CcHHHHhHHHHhhCCcHHHHHHHHHHh
Q 007519 499 PD-HRIWGALLGACGFCEGNAEIAEHAAKRLLE----LDPLNA---PAHVVLCNIYAASGRHVEEHKLRMDMG 563 (600)
Q Consensus 499 p~-~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~----~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~ 563 (600)
+. ...++.+...|. ..+++.+|.++|.+.+. ..|++| .+|..|+.+|.+.|++++|.++...+.
T Consensus 406 ~~~~~~l~~la~~~~-~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 406 YGVGKPLNQLAEAYE-ELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred hhhhHHHHHHHHHHH-HhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 32 456777888887 89999999999998876 345443 668899999999999999999777665
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.22 E-value=3.4e-07 Score=90.56 Aligned_cols=243 Identities=14% Similarity=0.099 Sum_probs=138.7
Q ss_pred HHhcCChhhHHHHhccCCCCCcchHHHHHHHHHcCCChhHHHHHhhhcCC------------CChhhHHHHHHHHHhcCC
Q 007519 21 YSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPE------------RNVVSWTAMICGLADAGR 88 (600)
Q Consensus 21 ~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~------------~~~~~~~~l~~~~~~~g~ 88 (600)
|.--|+.+.|.+..+.+ .+...|..|...+.+.++++-|.-.+-.|.. .+..+-..+.-.....|.
T Consensus 738 yvtiG~MD~AfksI~~I--kS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvLAieLgM 815 (1416)
T KOG3617|consen 738 YVTIGSMDAAFKSIQFI--KSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVLAIELGM 815 (1416)
T ss_pred EEEeccHHHHHHHHHHH--hhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHHHHHHhh
Confidence 44557777777766666 4556688888888888888777777666652 121333344444567788
Q ss_pred hHHHHHHhhcCCCCCceeHHHHHHHHHHCCChhHHHHHhhcCCC-CCcccHHHHHHHHHhcCCHhHHHHHHHhcccCCch
Q 007519 89 VCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPI-KNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVV 167 (600)
Q Consensus 89 ~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 167 (600)
.++|..+|++..+ |..|=+.|-..|.+++|+++.+.--. .-..||..-..-+-..+|++.|.+.|++...+-..
T Consensus 816 lEeA~~lYr~ckR-----~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafe 890 (1416)
T KOG3617|consen 816 LEEALILYRQCKR-----YDLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFE 890 (1416)
T ss_pred HHHHHHHHHHHHH-----HHHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHH
Confidence 8888888887654 33445566677888888887765543 22356777777777778888888888765433222
Q ss_pred hHHHHHHHHHhcCChhHHHHHHccCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHh
Q 007519 168 TWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIR 247 (600)
Q Consensus 168 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 247 (600)
++..|. .+......+.+++.. ...|......+-..|+.+.|+.++...+. |..+++..|-
T Consensus 891 v~rmL~------e~p~~~e~Yv~~~~d--~~L~~WWgqYlES~GemdaAl~~Y~~A~D------------~fs~VrI~C~ 950 (1416)
T KOG3617|consen 891 VFRMLK------EYPKQIEQYVRRKRD--ESLYSWWGQYLESVGEMDAALSFYSSAKD------------YFSMVRIKCI 950 (1416)
T ss_pred HHHHHH------hChHHHHHHHHhccc--hHHHHHHHHHHhcccchHHHHHHHHHhhh------------hhhheeeEee
Confidence 222221 122333333333332 23344444445555666666666655543 2344444445
Q ss_pred cCChhhHHHHhcccCCCCchhHHHHHHHHHhcCChHHHHHHHhhC
Q 007519 248 FGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNM 292 (600)
Q Consensus 248 ~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 292 (600)
.|+.++|-++-++- .|......+...|-..|++.+|..+|.+.
T Consensus 951 qGk~~kAa~iA~es--gd~AAcYhlaR~YEn~g~v~~Av~FfTrA 993 (1416)
T KOG3617|consen 951 QGKTDKAARIAEES--GDKAACYHLARMYENDGDVVKAVKFFTRA 993 (1416)
T ss_pred ccCchHHHHHHHhc--ccHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 55555555544432 23333444455555555555555555443
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.22 E-value=3.9e-11 Score=77.99 Aligned_cols=50 Identities=32% Similarity=0.537 Sum_probs=47.2
Q ss_pred CChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhc
Q 007519 295 RDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGA 344 (600)
Q Consensus 295 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 344 (600)
||+.+||.+|.+|++.|++++|.++|++|.+.|+.||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 68899999999999999999999999999999999999999999999874
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.20 E-value=5.1e-08 Score=96.13 Aligned_cols=201 Identities=12% Similarity=0.092 Sum_probs=135.4
Q ss_pred cchhHHHHHHHhcCChhhHHHHhccCCC-------------CCcchHHHHHHHHHcCCChhHHHHHhhhcCCCChhhHHH
Q 007519 12 VHLTSSITKYSKRGFIDEAKALFQLMPQ-------------RNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTA 78 (600)
Q Consensus 12 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 78 (600)
..|..++.+|.+..+.+-|.-.+..|.. ++ ..=..........|.+++|+.+|.+-.+-| .
T Consensus 758 ~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR~D-----L 831 (1416)
T KOG3617|consen 758 SVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLAIELGMLEEALILYRQCKRYD-----L 831 (1416)
T ss_pred HHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHHHHHhhHHHHHHHHHHHHHHH-----H
Confidence 4588889999998888888777777752 22 222223333457899999999999876533 5
Q ss_pred HHHHHHhcCChHHHHHHhhcCCC-CCceeHHHHHHHHHHCCChhHHHHHhhcCCC-----------------------CC
Q 007519 79 MICGLADAGRVCEARKLFEEMPE-RNVVSWNSMVVGLIRNGELNEARKVFNSMPI-----------------------KN 134 (600)
Q Consensus 79 l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----------------------~~ 134 (600)
|=+.|-..|++++|.++-+.-.+ .=..+|...+..+...+|.+.|++.|++... .|
T Consensus 832 lNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d 911 (1416)
T KOG3617|consen 832 LNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRD 911 (1416)
T ss_pred HHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccc
Confidence 55667778999999888775444 2234677778888888899999998887743 23
Q ss_pred cccHHHHHHHHHhcCCHhHHHHHHHhcccCCchhHHHHHHHHHhcCChhHHHHHHccCCCCCcchHHHHHHHHHhcCChh
Q 007519 135 VISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHK 214 (600)
Q Consensus 135 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 214 (600)
...|.-...-+-..|+.+.|..+|...+ -|-+++...|-.|+.++|-++-++- .|..+...+.+.|-..|++.
T Consensus 912 ~~L~~WWgqYlES~GemdaAl~~Y~~A~-----D~fs~VrI~C~qGk~~kAa~iA~es--gd~AAcYhlaR~YEn~g~v~ 984 (1416)
T KOG3617|consen 912 ESLYSWWGQYLESVGEMDAALSFYSSAK-----DYFSMVRIKCIQGKTDKAARIAEES--GDKAACYHLARMYENDGDVV 984 (1416)
T ss_pred hHHHHHHHHHHhcccchHHHHHHHHHhh-----hhhhheeeEeeccCchHHHHHHHhc--ccHHHHHHHHHHhhhhHHHH
Confidence 3333333444445666676766666543 2445556666667777776665543 35566677788888888888
Q ss_pred HHHHHHHHHHh
Q 007519 215 ESLLLFIEMKG 225 (600)
Q Consensus 215 ~a~~~~~~~~~ 225 (600)
+|...|.+...
T Consensus 985 ~Av~FfTrAqa 995 (1416)
T KOG3617|consen 985 KAVKFFTRAQA 995 (1416)
T ss_pred HHHHHHHHHHH
Confidence 88888777653
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.19 E-value=3.7e-08 Score=96.84 Aligned_cols=366 Identities=12% Similarity=0.069 Sum_probs=207.7
Q ss_pred CCchhHHHHHHHHHhcCChhHHHHHHccCCC---CCcchHHHHHHHHHhcCChhHHHHHHHHHHhhhcCCCCCC-hhhHH
Q 007519 164 RNVVTWTSMISGYCRAGEVEEGYCLFRRMPR---KNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCN-VQSCN 239 (600)
Q Consensus 164 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~~ 239 (600)
.|...|..|.-+..+.|++..+.+.|++... .....|+.+...+...|.-..|+.+++.-... ...|+ ...+.
T Consensus 321 nd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~---~~~ps~~s~~L 397 (799)
T KOG4162|consen 321 NDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKK---SEQPSDISVLL 397 (799)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhccc---ccCCCcchHHH
Confidence 4566666666777777777777777776653 23445667777777777777777777666543 11132 33333
Q ss_pred HHHHHHH-hcCChhhHHHHhcccC--------CCCchhHHHHHHHHHhc-----------CChHHHHHHHhhCCC---CC
Q 007519 240 SMINGYI-RFGRLEEAQNLFDTVP--------VRDEISWTSMIDGYLSV-----------GQVSNAYYLFHNMPD---RD 296 (600)
Q Consensus 240 ~l~~~~~-~~~~~~~a~~~~~~~~--------~~~~~~~~~l~~~~~~~-----------~~~~~A~~~~~~~~~---~~ 296 (600)
..-+.|. +.+..++++.+-.++. ...+..+..+.-+|... ....++++.+++..+ .|
T Consensus 398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~d 477 (799)
T KOG4162|consen 398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTD 477 (799)
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 3333333 3344555444433332 11223333333333221 122334444444422 22
Q ss_pred hhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhcccchhhhHHHHHHHh-hhcCCCc---------
Q 007519 297 AVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLM-KTESESD--------- 366 (600)
Q Consensus 297 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~~~~~--------- 366 (600)
+.+...+.--|+..++.+.|++..++..+.+-.-+...|..+.-.+...+++..|..+.+... +.|....
T Consensus 478 p~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~ 557 (799)
T KOG4162|consen 478 PLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIE 557 (799)
T ss_pred chHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhh
Confidence 222222333345556666666666666665445555555555555555566666665555322 2222000
Q ss_pred ---------hhHHHHHHHHHHh------c-----------------CChHHHHHHHhc-----------------CC---
Q 007519 367 ---------LILENCLISMYAK------C-----------------GVIDNAYNIFSN-----------------MV--- 394 (600)
Q Consensus 367 ---------~~~~~~l~~~~~~------~-----------------~~~~~A~~~~~~-----------------~~--- 394 (600)
..+...++..+-. . ++..+|...... ++
T Consensus 558 ~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~ 637 (799)
T KOG4162|consen 558 LTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSST 637 (799)
T ss_pred hhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCccc
Confidence 0011111111100 0 000000000000 00
Q ss_pred ---CCC------hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccCchHHHHHHHHHHHhhcCC
Q 007519 395 ---SRD------LVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKI 465 (600)
Q Consensus 395 ---~~~------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 465 (600)
.|+ ...|......+.+.++.++|...+.+.... .+-....|......+...|...+|.+.|..+. .+
T Consensus 638 ~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~-~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al---~l 713 (799)
T KOG4162|consen 638 VLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI-DPLSASVYYLRGLLLEVKGQLEEAKEAFLVAL---AL 713 (799)
T ss_pred ccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc-chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHH---hc
Confidence 111 124555666778888899999888888764 23444556655677788899999999998886 56
Q ss_pred CC-CcchHHHHHHHHhhcCChHHHHH--HHHhCC-CCC-CHHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCC
Q 007519 466 QP-GPEHYVSMINLLGRAGKIKEAEE--FVLRLP-FEP-DHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAP 537 (600)
Q Consensus 466 ~p-~~~~~~~l~~~~~~~g~~~~A~~--~~~~~~-~~p-~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 537 (600)
+| ++.+..+++.++.+.|+..-|.. ++..+. ..| +...|..+...+. +.|+.++|.+.|..+.++++.+|.
T Consensus 714 dP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k-~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 714 DPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFK-KLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred CCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHH-HccchHHHHHHHHHHHhhccCCCc
Confidence 88 48889999999999998777776 776664 556 5668888888888 999999999999999998887664
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.19 E-value=8.1e-08 Score=92.59 Aligned_cols=146 Identities=12% Similarity=0.128 Sum_probs=61.8
Q ss_pred HHHHHHHHHcCCChhHHHHHhhhcCC---CChhhHHHHHHHHHhcCChHHHHHHhhcCCC---CCceeHHHHHHHHHHCC
Q 007519 45 YNAMLSGFLQNGRLSEARRLFEEMPE---RNVVSWTAMICGLADAGRVCEARKLFEEMPE---RNVVSWNSMVVGLIRNG 118 (600)
Q Consensus 45 ~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~ 118 (600)
|..++..| ..+.+...+++.+.+++ .+..+....+-.+...|+-++|.+......+ .+.++|+.+.-.+....
T Consensus 11 F~~~lk~y-E~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK 89 (700)
T KOG1156|consen 11 FRRALKCY-ETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDK 89 (700)
T ss_pred HHHHHHHH-HHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhh
Confidence 33334433 34444444444444443 1223333333334444555555555554443 23344555555555555
Q ss_pred ChhHHHHHhhcCCC---CCcccHHHHHHHHHhcCCHhHHHHHHHhccc---CCchhHHHHHHHHHhcCChhHHHHHHcc
Q 007519 119 ELNEARKVFNSMPI---KNVISWNAMIAGYVECCMMGEAIVLFEEMEE---RNVVTWTSMISGYCRAGEVEEGYCLFRR 191 (600)
Q Consensus 119 ~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 191 (600)
++++|++.|..... .|...+.-+.-.-++.|+++.....-....+ .....|..++.++.-.|+...|..+++.
T Consensus 90 ~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~e 168 (700)
T KOG1156|consen 90 KYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEE 168 (700)
T ss_pred hHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555443 2223333333333344444443333333222 1122344444444444444444444433
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.18 E-value=5.7e-07 Score=90.92 Aligned_cols=464 Identities=13% Similarity=0.118 Sum_probs=280.1
Q ss_pred CCcchHHHHHHHHHcCCChhHHHHHhhhcCCCChhhHHHHHHHHHhcCChHHHHHHhhcCCC-------CC-ceeHHHHH
Q 007519 40 RNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPE-------RN-VVSWNSMV 111 (600)
Q Consensus 40 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~-~~~~~~l~ 111 (600)
.+..++++|...|..+++-.+ ..++.|+.--+..+.-||..+++--|.-.|++-.- -| ...|-.+.
T Consensus 870 ~d~a~hnAlaKIyIDSNNnPE------~fLkeN~yYDs~vVGkYCEKRDP~lA~vaYerGqcD~elI~vcNeNSlfK~~a 943 (1666)
T KOG0985|consen 870 QDPATHNALAKIYIDSNNNPE------RFLKENPYYDSKVVGKYCEKRDPHLACVAYERGQCDLELINVCNENSLFKSQA 943 (1666)
T ss_pred cchHHHhhhhheeecCCCChH------HhcccCCcchhhHHhhhhcccCCceEEEeecccCCcHHHHHhcCchhHHHHHH
Confidence 345555555555554433221 11122333333444445555555444444443321 01 11344555
Q ss_pred HHHHHCCChhHHHHHhhcCCC-----------------CCcccHHHHHHHHHhcCCHhHHHHHHHhcc-cCCch-----h
Q 007519 112 VGLIRNGELNEARKVFNSMPI-----------------KNVISWNAMIAGYVECCMMGEAIVLFEEME-ERNVV-----T 168 (600)
Q Consensus 112 ~~~~~~~~~~~a~~~~~~~~~-----------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~~~-----~ 168 (600)
+.+.+..|.+--.+++.+-.. .|+.......+++...+-+.+-+++++++. +++++ .
T Consensus 944 RYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nL 1023 (1666)
T KOG0985|consen 944 RYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNL 1023 (1666)
T ss_pred HHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhh
Confidence 666666666655555533211 466666777788888888888888888766 44332 2
Q ss_pred HHHHHHHHHhcCChhHHHHHHccCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHhc
Q 007519 169 WTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRF 248 (600)
Q Consensus 169 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 248 (600)
-+.|+-...+ -+..+..++.+++..-|.. .+...+...+-+++|..+|+... .+....+.|+. .-
T Consensus 1024 QnLLiLtAik-ad~trVm~YI~rLdnyDa~---~ia~iai~~~LyEEAF~ifkkf~--------~n~~A~~VLie---~i 1088 (1666)
T KOG0985|consen 1024 QNLLILTAIK-ADRTRVMEYINRLDNYDAP---DIAEIAIENQLYEEAFAIFKKFD--------MNVSAIQVLIE---NI 1088 (1666)
T ss_pred hhhHHHHHhh-cChHHHHHHHHHhccCCch---hHHHHHhhhhHHHHHHHHHHHhc--------ccHHHHHHHHH---Hh
Confidence 3333333333 3445566666666543221 23455666777788888887653 34444444443 34
Q ss_pred CChhhHHHHhcccCCCCchhHHHHHHHHHhcCChHHHHHHHhhCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCC
Q 007519 249 GRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGV 328 (600)
Q Consensus 249 ~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 328 (600)
+.++.|.++-++.. .+.+|+.+..+-.+.|.+.+|++-|-+. .|+..|..++....+.|.|++-.+.+...++..-
T Consensus 1089 ~~ldRA~efAe~~n--~p~vWsqlakAQL~~~~v~dAieSyika--dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~ 1164 (1666)
T KOG0985|consen 1089 GSLDRAYEFAERCN--EPAVWSQLAKAQLQGGLVKDAIESYIKA--DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVR 1164 (1666)
T ss_pred hhHHHHHHHHHhhC--ChHHHHHHHHHHHhcCchHHHHHHHHhc--CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhc
Confidence 66777777766654 4557888888888888888888877654 4556788888888888888888888877777655
Q ss_pred CCChhHHHHHHHHHhcccchhhhHHHHHHHhhhcCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHH
Q 007519 329 PPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGF 408 (600)
Q Consensus 329 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~ 408 (600)
.|... +.|+-+|++.+++.+...++ .-|+......+.+-+...|.++.|.-+|. ++..|..+...+
T Consensus 1165 E~~id--~eLi~AyAkt~rl~elE~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~-----~vSN~a~La~TL 1230 (1666)
T KOG0985|consen 1165 EPYID--SELIFAYAKTNRLTELEEFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYS-----NVSNFAKLASTL 1230 (1666)
T ss_pred Cccch--HHHHHHHHHhchHHHHHHHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHH-----HhhhHHHHHHHH
Confidence 55443 45777888888777665554 34565556667777777888888877775 445688888888
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCCCcchHHHHHHHHhhcCChHHH
Q 007519 409 SHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEA 488 (600)
Q Consensus 409 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 488 (600)
...|+++.|...-++. .+..||..+-.+|...+.+.-| .+... .+.....-..-|+..|-..|.+++-
T Consensus 1231 V~LgeyQ~AVD~aRKA------ns~ktWK~VcfaCvd~~EFrlA-----QiCGL-~iivhadeLeeli~~Yq~rGyFeEl 1298 (1666)
T KOG0985|consen 1231 VYLGEYQGAVDAARKA------NSTKTWKEVCFACVDKEEFRLA-----QICGL-NIIVHADELEELIEYYQDRGYFEEL 1298 (1666)
T ss_pred HHHHHHHHHHHHhhhc------cchhHHHHHHHHHhchhhhhHH-----HhcCc-eEEEehHhHHHHHHHHHhcCcHHHH
Confidence 9999999888766553 3567888888888887776654 23321 2233566677899999999999999
Q ss_pred HHHHHhCC-C-CCCHHHHHHHHHHHhhhhCCHHHHHHHHHHHHh-hC-C------CCCCcHHHHhHHHHhhCCcHHHH
Q 007519 489 EEFVLRLP-F-EPDHRIWGALLGACGFCEGNAEIAEHAAKRLLE-LD-P------LNAPAHVVLCNIYAASGRHVEEH 556 (600)
Q Consensus 489 ~~~~~~~~-~-~p~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~-~~-p------~~~~~~~~l~~~~~~~g~~~~A~ 556 (600)
..+++... + +..-..|..+.-.|. .=..++..++++-.+. ++ | +....|.-|...|.+-..||.|.
T Consensus 1299 Isl~Ea~LGLERAHMgmfTELaiLYs--kykp~km~EHl~LFwsRvNipKviRA~eqahlW~ElvfLY~~y~eyDNAa 1374 (1666)
T KOG0985|consen 1299 ISLLEAGLGLERAHMGMFTELAILYS--KYKPEKMMEHLKLFWSRVNIPKVIRAAEQAHLWSELVFLYDKYEEYDNAA 1374 (1666)
T ss_pred HHHHHhhhchhHHHHHHHHHHHHHHH--hcCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH
Confidence 99988753 2 233334444444443 3344555555544433 11 2 12334445555555555555443
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.17 E-value=9.2e-11 Score=76.26 Aligned_cols=50 Identities=28% Similarity=0.585 Sum_probs=46.9
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcc
Q 007519 396 RDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSH 445 (600)
Q Consensus 396 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 445 (600)
||+.+||+++.+|++.|++++|.++|++|.+.|++||..||+.++.+|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78899999999999999999999999999999999999999999998874
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.1e-08 Score=93.13 Aligned_cols=197 Identities=16% Similarity=0.192 Sum_probs=117.8
Q ss_pred hhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhcccchhhhHHHHHHHhhhcCCCchhHHHHHHHH
Q 007519 297 AVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISM 376 (600)
Q Consensus 297 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 376 (600)
...+..+...+...|++++|...+++..+.. +.+...+ ..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~-----------------------------------~~la~~ 74 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAY-----------------------------------LALALY 74 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHH-----------------------------------HHHHHH
Confidence 3456667777777777777777777776542 1222333 334444
Q ss_pred HHhcCChHHHHHHHhcCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-ChhHHHHHHHHhcccCchHHH
Q 007519 377 YAKCGVIDNAYNIFSNMV---SRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHP-NSVTFLGILSACSHAGLVSRG 452 (600)
Q Consensus 377 ~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a 452 (600)
+...|++++|...+++.. +.+...+..+...+...|++++|.+.+++.......| ....+..+..++...|++++|
T Consensus 75 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 154 (234)
T TIGR02521 75 YQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKA 154 (234)
T ss_pred HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHH
Confidence 455555555555554443 2334455556666666677777777777766532222 223455556666777777777
Q ss_pred HHHHHHHHhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhCC-C-CCCHHHHHHHHHHHhhhhCCHHHHHHHHHHHH
Q 007519 453 WELFNAMFDVYKIQP-GPEHYVSMINLLGRAGKIKEAEEFVLRLP-F-EPDHRIWGALLGACGFCEGNAEIAEHAAKRLL 529 (600)
Q Consensus 453 ~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~p~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~ 529 (600)
...+++.... .| +...+..++..+...|++++|.+.+++.. . +++...+......+. ..|+.+.|....+.+.
T Consensus 155 ~~~~~~~~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 155 EKYLTRALQI---DPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIAR-ALGDVAAAQRYGAQLQ 230 (234)
T ss_pred HHHHHHHHHh---CcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HHhhHHHHHHHHHHHH
Confidence 7777777653 33 35566677777777777777777776653 2 223444444445555 6777777777777665
Q ss_pred hhCC
Q 007519 530 ELDP 533 (600)
Q Consensus 530 ~~~p 533 (600)
...|
T Consensus 231 ~~~~ 234 (234)
T TIGR02521 231 KLFP 234 (234)
T ss_pred hhCc
Confidence 5433
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.15 E-value=8.6e-07 Score=85.75 Aligned_cols=248 Identities=13% Similarity=0.082 Sum_probs=154.0
Q ss_pred hHHHHHHHHHhcCChHHHHHHhhcCCCC---CceeHHHHHHHHHHCCChhHHHHHhhcCCC---CCcccHHHHHHHHHhc
Q 007519 75 SWTAMICGLADAGRVCEARKLFEEMPER---NVVSWNSMVVGLIRNGELNEARKVFNSMPI---KNVISWNAMIAGYVEC 148 (600)
Q Consensus 75 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~ 148 (600)
.+...+..| ..+++.+.+++.+.+++. ...+.....-.+...|+-++|.+....... .+...|..+.-.+...
T Consensus 10 lF~~~lk~y-E~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~d 88 (700)
T KOG1156|consen 10 LFRRALKCY-ETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSD 88 (700)
T ss_pred HHHHHHHHH-HHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhh
Confidence 344455554 667777777777766652 223344444445667888899888887766 4556677777777778
Q ss_pred CCHhHHHHHHHhccc---CCchhHHHHHHHHHhcCChhHHHHHHccCCC---CCcchHHHHHHHHHhcCChhHHHHHHHH
Q 007519 149 CMMGEAIVLFEEMEE---RNVVTWTSMISGYCRAGEVEEGYCLFRRMPR---KNVVSWTAMIGGFAWNGFHKESLLLFIE 222 (600)
Q Consensus 149 ~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~ 222 (600)
.++++|++.|..+.. .|...+.-+.-.-++.|+++..........+ .....|..++.++.-.|+...|..++++
T Consensus 89 K~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~e 168 (700)
T KOG1156|consen 89 KKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEE 168 (700)
T ss_pred hhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999998773 4556666665556667777777666665554 2445788888888888999999999998
Q ss_pred HHhhhcCCCCCChhhHHHHHH------HHHhcCChhhHHHHhcccCCC---CchhHHHHHHHHHhcCChHHHHHHHhhCC
Q 007519 223 MKGICDNGNNCNVQSCNSMIN------GYIRFGRLEEAQNLFDTVPVR---DEISWTSMIDGYLSVGQVSNAYYLFHNMP 293 (600)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~l~~------~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 293 (600)
..+... -.|+...|..... ...+.|..+.|.+.+....+. ....--.-...+.+.++.++|..++..+.
T Consensus 169 f~~t~~--~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll 246 (700)
T KOG1156|consen 169 FEKTQN--TSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLL 246 (700)
T ss_pred HHHhhc--cCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHH
Confidence 887621 2455555543322 334567777777776655422 11122334556677778888887777776
Q ss_pred C--CChhhHHH-HHHHHHhCCChhHHH-HHHHHHHH
Q 007519 294 D--RDAVAWTA-MISGLVQNELFVEAT-YLFMEMRA 325 (600)
Q Consensus 294 ~--~~~~~~~~-li~~~~~~g~~~~a~-~~~~~m~~ 325 (600)
. ||...|.. +..++.+-.+--+++ .+|...-+
T Consensus 247 ~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~ 282 (700)
T KOG1156|consen 247 ERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSE 282 (700)
T ss_pred hhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhh
Confidence 5 44444433 333443222222333 44444433
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=4.4e-09 Score=107.71 Aligned_cols=210 Identities=10% Similarity=-0.005 Sum_probs=157.8
Q ss_pred cchhhhHHHHHHHhhhcCCCchhHHHHHHHHHH---------hcCChHHHHHHHhcCC---CCChhhHHHHHHHHHhcCC
Q 007519 346 ANIDLGRQIHCVLMKTESESDLILENCLISMYA---------KCGVIDNAYNIFSNMV---SRDLVSWNSMVMGFSHHGL 413 (600)
Q Consensus 346 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---------~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~ 413 (600)
++.+.|...++.+.+.... +...+..+..++. ..+++++|...+++.. +.+...+..+...+...|+
T Consensus 275 ~~~~~A~~~~~~Al~ldP~-~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 275 YSLQQALKLLTQCVNMSPN-SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC
Confidence 3567888888888776543 3445555555443 2345789999998876 4577788888889999999
Q ss_pred hHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCCC-cchHHHHHHHHhhcCChHHHHHHH
Q 007519 414 ANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPG-PEHYVSMINLLGRAGKIKEAEEFV 492 (600)
Q Consensus 414 ~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~ 492 (600)
+++|+..|++..+.+ +.+...+..+..++...|++++|...++++.+. .|+ ...+..++..+...|++++|...+
T Consensus 354 ~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l---~P~~~~~~~~~~~~~~~~g~~eeA~~~~ 429 (553)
T PRK12370 354 YIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKL---DPTRAAAGITKLWITYYHTGIDDAIRLG 429 (553)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCChhhHHHHHHHHHhccCHHHHHHHH
Confidence 999999999999853 334566777788899999999999999999864 664 334444555677789999999999
Q ss_pred HhCC--CCCCHH-HHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCCcHHHHhHHHHhhCCcHHHHHHHHHHh
Q 007519 493 LRLP--FEPDHR-IWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMG 563 (600)
Q Consensus 493 ~~~~--~~p~~~-~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 563 (600)
++.. ..|+.. .+..+..++. ..|+.++|...++++....|.+......++..|...|+ +|...++.+.
T Consensus 430 ~~~l~~~~p~~~~~~~~la~~l~-~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~a~~~l~~ll 500 (553)
T PRK12370 430 DELRSQHLQDNPILLSMQVMFLS-LKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNSE--RALPTIREFL 500 (553)
T ss_pred HHHHHhccccCHHHHHHHHHHHH-hCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccHH--HHHHHHHHHH
Confidence 8864 245544 4555556666 89999999999999988888777777888888888884 7777444444
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.5e-05 Score=79.62 Aligned_cols=485 Identities=12% Similarity=0.097 Sum_probs=271.1
Q ss_pred HHHHHHHHHcCCChhHHHHHhhhcCC-CChhhHHHHH-----HHHHhcCChHHHHHHhhcCCC----CCceeHHHHHHHH
Q 007519 45 YNAMLSGFLQNGRLSEARRLFEEMPE-RNVVSWTAMI-----CGLADAGRVCEARKLFEEMPE----RNVVSWNSMVVGL 114 (600)
Q Consensus 45 ~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~l~-----~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~l~~~~ 114 (600)
+-.+...|.+.|-...|++.|..... ....+...++ -.|...-.++.+.+.++.|.. .|..+...+..-|
T Consensus 609 ra~IAqLCEKAGL~qraLehytDl~DIKR~vVhth~L~pEwLv~yFg~lsve~s~eclkaml~~NirqNlQi~VQvatky 688 (1666)
T KOG0985|consen 609 RAEIAQLCEKAGLLQRALEHYTDLYDIKRVVVHTHLLNPEWLVNYFGSLSVEDSLECLKAMLSANIRQNLQIVVQVATKY 688 (1666)
T ss_pred HHHHHHHHHhcchHHHHHHhcccHHHHHHHHHHhccCCHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 56677788888888888888877754 1111222211 234445567778888887765 3444445555555
Q ss_pred HHCCChhHHHHHhhcCCC---------------CCcccHHHHHHHHHhcCCHhHHHHHHHhcc---------------c-
Q 007519 115 IRNGELNEARKVFNSMPI---------------KNVISWNAMIAGYVECCMMGEAIVLFEEME---------------E- 163 (600)
Q Consensus 115 ~~~~~~~~a~~~~~~~~~---------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---------------~- 163 (600)
...=..+..+++|+..+. .|+......|.+.++.|.+.+.+++.++-- -
T Consensus 689 ~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicresn~YdpErvKNfLkeAkL~ 768 (1666)
T KOG0985|consen 689 HEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLT 768 (1666)
T ss_pred HHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhccccCCHHHHHHHHHhcccc
Confidence 555556666677766654 577777788888889998888887765432 0
Q ss_pred ---C-----CchhHHHHHHHHHhcCChhHHHHHHccCCCC----------------------------CcchHHHHHHHH
Q 007519 164 ---R-----NVVTWTSMISGYCRAGEVEEGYCLFRRMPRK----------------------------NVVSWTAMIGGF 207 (600)
Q Consensus 164 ---~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----------------------------~~~~~~~li~~~ 207 (600)
| |..-+-.=+..|.-.++..+-+++|-+-..| ....-..|..-.
T Consensus 769 DqlPLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQkvNps~~p~VvG~LLD~dC~E~~ik~Li~~v~gq~~~deLv~Ev 848 (1666)
T KOG0985|consen 769 DQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRTPQVVGALLDVDCSEDFIKNLILSVRGQFPVDELVEEV 848 (1666)
T ss_pred ccCceEEEecccccHHHHHHHHHHhhHHHHHHHHHhhcCCcccchhhhhhhcCCCcHHHHHHHHHHHhccCChHHHHHHH
Confidence 1 1111111112222233333333333222111 112233344445
Q ss_pred HhcCChhHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHhcCChhh-HHH---HhcccC------CCCc-----------
Q 007519 208 AWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEE-AQN---LFDTVP------VRDE----------- 266 (600)
Q Consensus 208 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~---~~~~~~------~~~~----------- 266 (600)
-+.++..--+..++...+. | ..|..++++|.+.|...++-.+ -++ .|+... ++|+
T Consensus 849 EkRNRLklLlp~LE~~i~e---G-~~d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKRDP~lA~vaYerGq 924 (1666)
T KOG0985|consen 849 EKRNRLKLLLPWLESLIQE---G-SQDPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRDPHLACVAYERGQ 924 (1666)
T ss_pred HhhhhHHHHHHHHHHHHhc---c-CcchHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhcccCCceEEEeecccC
Confidence 5566666666666666654 4 3477889999888876554322 111 111110 1111
Q ss_pred ------------hhHHHHHHHHHhcCChHHHHHHHhhCC----------------C-CChhhHHHHHHHHHhCCChhHHH
Q 007519 267 ------------ISWTSMIDGYLSVGQVSNAYYLFHNMP----------------D-RDAVAWTAMISGLVQNELFVEAT 317 (600)
Q Consensus 267 ------------~~~~~l~~~~~~~~~~~~A~~~~~~~~----------------~-~~~~~~~~li~~~~~~g~~~~a~ 317 (600)
..+.....-+.+..+.+--.+++.+-. + .|+..-...+.++...+-+.+-+
T Consensus 925 cD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLI 1004 (1666)
T KOG0985|consen 925 CDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELI 1004 (1666)
T ss_pred CcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHH
Confidence 122333333444444444334432211 0 35566677788888888888999
Q ss_pred HHHHHHHHCCCCCC-hhHHHHHHHHHhcccchhhhHHHHHHHhhhcCC------CchhHHHHHHHHHH------------
Q 007519 318 YLFMEMRAHGVPPL-NATFSVLFGAAGATANIDLGRQIHCVLMKTESE------SDLILENCLISMYA------------ 378 (600)
Q Consensus 318 ~~~~~m~~~g~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~------~~~~~~~~l~~~~~------------ 378 (600)
+++++..-.....+ ..-+..|+-.-+-..+...+.++.+++-..+.+ .+...|......|-
T Consensus 1005 ELLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyDa~~ia~iai~~~LyEEAF~ifkkf~~n~~A~~VL 1084 (1666)
T KOG0985|consen 1005 ELLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIAEIAIENQLYEEAFAIFKKFDMNVSAIQVL 1084 (1666)
T ss_pred HHHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCCchhHHHHHhhhhHHHHHHHHHHHhcccHHHHHHH
Confidence 99988764321111 111212221111122333333333333222110 00111111111111
Q ss_pred --hcCChHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccCchHHHHHHH
Q 007519 379 --KCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELF 456 (600)
Q Consensus 379 --~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 456 (600)
..+.++.|.++-++.. .+..|+.+..+..+.|...+|++-|-+. .|+..|..+++.+.+.|.+++-.+++
T Consensus 1085 ie~i~~ldRA~efAe~~n--~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL 1156 (1666)
T KOG0985|consen 1085 IENIGSLDRAYEFAERCN--EPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYL 1156 (1666)
T ss_pred HHHhhhHHHHHHHHHhhC--ChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHH
Confidence 1233344444333332 4467999999999999999999877543 35567889999999999999999999
Q ss_pred HHHHhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCC
Q 007519 457 NAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNA 536 (600)
Q Consensus 457 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 536 (600)
..+.++ .-.|. +-..|+.+|++.++..+-++++ ..|+.........-|. ..|.++.|.-+|. +.
T Consensus 1157 ~MaRkk-~~E~~--id~eLi~AyAkt~rl~elE~fi----~gpN~A~i~~vGdrcf-~~~~y~aAkl~y~--------~v 1220 (1666)
T KOG0985|consen 1157 LMARKK-VREPY--IDSELIFAYAKTNRLTELEEFI----AGPNVANIQQVGDRCF-EEKMYEAAKLLYS--------NV 1220 (1666)
T ss_pred HHHHHh-hcCcc--chHHHHHHHHHhchHHHHHHHh----cCCCchhHHHHhHHHh-hhhhhHHHHHHHH--------Hh
Confidence 877765 44444 4567899999999988877776 3466666677777777 7777776666553 23
Q ss_pred CcHHHHhHHHHhhCCcHHHHH
Q 007519 537 PAHVVLCNIYAASGRHVEEHK 557 (600)
Q Consensus 537 ~~~~~l~~~~~~~g~~~~A~~ 557 (600)
..|..|+..+...|.+..|..
T Consensus 1221 SN~a~La~TLV~LgeyQ~AVD 1241 (1666)
T KOG0985|consen 1221 SNFAKLASTLVYLGEYQGAVD 1241 (1666)
T ss_pred hhHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666655554
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.4e-08 Score=95.02 Aligned_cols=217 Identities=12% Similarity=-0.026 Sum_probs=138.6
Q ss_pred HhCCChhHHHHHHHHHHHCC-CCCC--hhHHHHHHHHHhcccchhhhHHHHHHHhhhcCCCchhHHHHHHHHHHhcCChH
Q 007519 308 VQNELFVEATYLFMEMRAHG-VPPL--NATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVID 384 (600)
Q Consensus 308 ~~~g~~~~a~~~~~~m~~~g-~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 384 (600)
...+..+.++.-+.++.... ..|+ ...+..+...+...|+.+.|...+....+.... +...|+.+...+...|+++
T Consensus 37 ~~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~~~~~g~~~ 115 (296)
T PRK11189 37 QPTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPD-MADAYNYLGIYLTQAGNFD 115 (296)
T ss_pred CCchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCCHH
Confidence 34466677888888877542 2222 234555666777888888888888877776543 5677788888888888888
Q ss_pred HHHHHHhcCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccCchHHHHHHHHHHHh
Q 007519 385 NAYNIFSNMV---SRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFD 461 (600)
Q Consensus 385 ~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 461 (600)
+|...|++.. +.+..+|..+..++...|++++|++.|++..+. .|+..........+...++.++|.+.+++...
T Consensus 116 ~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~ 193 (296)
T PRK11189 116 AAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYE 193 (296)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 8888888775 335567777778888888888888888888764 45443222222233456778888888866553
Q ss_pred hcCCCCCcchHHHHHHHHhhcCChHH--HHHHHHh-CC----CCC-CHHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCC
Q 007519 462 VYKIQPGPEHYVSMINLLGRAGKIKE--AEEFVLR-LP----FEP-DHRIWGALLGACGFCEGNAEIAEHAAKRLLELDP 533 (600)
Q Consensus 462 ~~~~~p~~~~~~~l~~~~~~~g~~~~--A~~~~~~-~~----~~p-~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p 533 (600)
...|+...+ .+. ....|+..+ +.+.+.+ .. ..| ....|..+...+. ..|++++|+..|+++++.+|
T Consensus 194 --~~~~~~~~~-~~~--~~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~-~~g~~~~A~~~~~~Al~~~~ 267 (296)
T PRK11189 194 --KLDKEQWGW-NIV--EFYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYL-SLGDLDEAAALFKLALANNV 267 (296)
T ss_pred --hCCccccHH-HHH--HHHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCC
Confidence 223332221 222 233444433 3322222 11 112 2345677777777 88888888888888888886
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.07 E-value=3.5e-06 Score=77.10 Aligned_cols=261 Identities=11% Similarity=0.027 Sum_probs=188.3
Q ss_pred CChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHH-HHHHhcccchhhhHHHHHHHhhhcCCCchhHHHHH
Q 007519 295 RDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVL-FGAAGATANIDLGRQIHCVLMKTESESDLILENCL 373 (600)
Q Consensus 295 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 373 (600)
.|+.....+.+.+...|+.++|+..|++.+.. .|+..+---+ .-.+...|+.+....+...+.... +.....|-.-
T Consensus 230 ~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~ 306 (564)
T KOG1174|consen 230 CNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVH 306 (564)
T ss_pred ccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhh
Confidence 47778889999999999999999999988764 4544321111 112345666666666555443322 1122222233
Q ss_pred HHHHHhcCChHHHHHHHhcCCCC---ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccCchH
Q 007519 374 ISMYAKCGVIDNAYNIFSNMVSR---DLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVS 450 (600)
Q Consensus 374 ~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~ 450 (600)
.......+++..|+.+-++.+.. ++..+-.-...+...|++++|.-.|+...... +-+..+|..++.+|...|.+.
T Consensus 307 ~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~k 385 (564)
T KOG1174|consen 307 AQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFK 385 (564)
T ss_pred hhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHH
Confidence 34455678899999999888744 44444444567889999999999999988641 345689999999999999999
Q ss_pred HHHHHHHHHHhhcCCCCCcchHHHHH-HHH-hhcCChHHHHHHHHhC-CCCCCHH-HHHHHHHHHhhhhCCHHHHHHHHH
Q 007519 451 RGWELFNAMFDVYKIQPGPEHYVSMI-NLL-GRAGKIKEAEEFVLRL-PFEPDHR-IWGALLGACGFCEGNAEIAEHAAK 526 (600)
Q Consensus 451 ~a~~~~~~~~~~~~~~p~~~~~~~l~-~~~-~~~g~~~~A~~~~~~~-~~~p~~~-~~~~l~~~~~~~~g~~~~a~~~~~ 526 (600)
+|.-.-+...+. +..+..+...++ ..+ ....--++|.+++++. ...|+.. ..+.+...|. ..|..+.++.+++
T Consensus 386 EA~~~An~~~~~--~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~-~Eg~~~D~i~LLe 462 (564)
T KOG1174|consen 386 EANALANWTIRL--FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQ-VEGPTKDIIKLLE 462 (564)
T ss_pred HHHHHHHHHHHH--hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHH-hhCccchHHHHHH
Confidence 998888777753 333555655553 222 2333458899999885 4788754 5566666777 9999999999999
Q ss_pred HHHhhCCCCCCcHHHHhHHHHhhCCcHHHHHHHHHHh
Q 007519 527 RLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMG 563 (600)
Q Consensus 527 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 563 (600)
+.+...| |...+..|++.+...+.+.+|...+....
T Consensus 463 ~~L~~~~-D~~LH~~Lgd~~~A~Ne~Q~am~~y~~AL 498 (564)
T KOG1174|consen 463 KHLIIFP-DVNLHNHLGDIMRAQNEPQKAMEYYYKAL 498 (564)
T ss_pred HHHhhcc-ccHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 9999999 89999999999999999999999554443
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.06 E-value=3.5e-07 Score=92.52 Aligned_cols=150 Identities=13% Similarity=0.102 Sum_probs=105.7
Q ss_pred chhHHHHHHHhcCChhhHHHHhccCCC---CCcchHHHHHHHHHcCCChhHHHHHhhhcCCCCh-----hhHHHHHHHHH
Q 007519 13 HLTSSITKYSKRGFIDEAKALFQLMPQ---RNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNV-----VSWTAMICGLA 84 (600)
Q Consensus 13 ~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-----~~~~~l~~~~~ 84 (600)
.|..+..-|..-.+...|.+.|+...+ .+..+...+.+.|++..+++.|..+.-...+.+. ..|-.+.-.|.
T Consensus 494 af~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyL 573 (1238)
T KOG1127|consen 494 AFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYL 573 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhcccccc
Confidence 456666667666677778888887765 4566788888888888888888887444433221 22333555677
Q ss_pred hcCChHHHHHHhhcCCC---CCceeHHHHHHHHHHCCChhHHHHHhhcCCCCCcc-cHHHHH--HHHHhcCCHhHHHHHH
Q 007519 85 DAGRVCEARKLFEEMPE---RNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVI-SWNAMI--AGYVECCMMGEAIVLF 158 (600)
Q Consensus 85 ~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~l~--~~~~~~~~~~~A~~~~ 158 (600)
+.+++.+|+.-|+...+ .|...|..++.+|.+.|.+..|+++|.+....++. .|...- -..+..|.+.+|...+
T Consensus 574 ea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald~l 653 (1238)
T KOG1127|consen 574 EAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALDAL 653 (1238)
T ss_pred CccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 78888888888887776 46677888999999999999999999888764433 232222 2245668888888877
Q ss_pred Hhcc
Q 007519 159 EEME 162 (600)
Q Consensus 159 ~~~~ 162 (600)
....
T Consensus 654 ~~ii 657 (1238)
T KOG1127|consen 654 GLII 657 (1238)
T ss_pred HHHH
Confidence 7665
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.7e-07 Score=92.70 Aligned_cols=283 Identities=16% Similarity=0.107 Sum_probs=151.7
Q ss_pred HHHhcCChHHHHHHHhhCCC--CCh-hhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHh------cc
Q 007519 275 GYLSVGQVSNAYYLFHNMPD--RDA-VAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAG------AT 345 (600)
Q Consensus 275 ~~~~~~~~~~A~~~~~~~~~--~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~------~~ 345 (600)
.+...|++++|++.++.-.. .|. .........+.+.|+.++|..+|..+++. .|+...|...+..+. ..
T Consensus 13 il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~r--NPdn~~Yy~~L~~~~g~~~~~~~ 90 (517)
T PF12569_consen 13 ILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDR--NPDNYDYYRGLEEALGLQLQLSD 90 (517)
T ss_pred HHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHhhhccccc
Confidence 34455555566555554333 222 23444455566666666666666666665 345444444333332 11
Q ss_pred cchhhhHHHHHHHhhhcCCCchhHHHHHHHHHHhcCChH-HHHHHHhcCCCCCh-hhHHHHHHHHHhcCChHHHHHHHHH
Q 007519 346 ANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVID-NAYNIFSNMVSRDL-VSWNSMVMGFSHHGLANETLKVFES 423 (600)
Q Consensus 346 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~A~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~ 423 (600)
.+.+....+++.+...-...+.. ..+.-.+.....+. .+..++..+....+ .+|+.+-..|.......-..+++..
T Consensus 91 ~~~~~~~~~y~~l~~~yp~s~~~--~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~ 168 (517)
T PF12569_consen 91 EDVEKLLELYDELAEKYPRSDAP--RRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEE 168 (517)
T ss_pred ccHHHHHHHHHHHHHhCccccch--hHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHHH
Confidence 13444455555444332221111 11111111111121 22222223332222 3344444444433333334444444
Q ss_pred HHHc----C----------CCCChh--HHHHHHHHhcccCchHHHHHHHHHHHhhcCCCCC-cchHHHHHHHHhhcCChH
Q 007519 424 MLES----G----------THPNSV--TFLGILSACSHAGLVSRGWELFNAMFDVYKIQPG-PEHYVSMINLLGRAGKIK 486 (600)
Q Consensus 424 m~~~----~----------~~p~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~ 486 (600)
.... + -+|+.. ++..+...|...|++++|.++++++++. .|+ +..|..-++.|-+.|+++
T Consensus 169 ~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h---tPt~~ely~~KarilKh~G~~~ 245 (517)
T PF12569_consen 169 YVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH---TPTLVELYMTKARILKHAGDLK 245 (517)
T ss_pred HHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc---CCCcHHHHHHHHHHHHHCCCHH
Confidence 3321 1 123332 3344556777888888998888888854 675 778888888888899999
Q ss_pred HHHHHHHhCC-CCCCHHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhC--CCC-------CCcHHHHhHHHHhhCCcHHHH
Q 007519 487 EAEEFVLRLP-FEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELD--PLN-------APAHVVLCNIYAASGRHVEEH 556 (600)
Q Consensus 487 ~A~~~~~~~~-~~p~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~--p~~-------~~~~~~l~~~~~~~g~~~~A~ 556 (600)
+|.+.++... ..+...-.|+-..-+..+.|++++|...+......+ |.. .......+.+|.+.|++..|.
T Consensus 246 ~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~AL 325 (517)
T PF12569_consen 246 EAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLAL 325 (517)
T ss_pred HHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 9888888876 555555555555444448888888888887766544 211 122235578888999999988
Q ss_pred HHHHHHhh
Q 007519 557 KLRMDMGL 564 (600)
Q Consensus 557 ~~~~~~~~ 564 (600)
+-+..+.+
T Consensus 326 k~~~~v~k 333 (517)
T PF12569_consen 326 KRFHAVLK 333 (517)
T ss_pred HHHHHHHH
Confidence 85555543
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.2e-06 Score=86.95 Aligned_cols=424 Identities=14% Similarity=0.087 Sum_probs=207.2
Q ss_pred HHHHHHCCChhHHHHHhhcCCC--CC-cccHHHHHHHHHhcCCHhHHHHHHHhccc--CCchhHH-HHHHHHHhc-----
Q 007519 111 VVGLIRNGELNEARKVFNSMPI--KN-VISWNAMIAGYVECCMMGEAIVLFEEMEE--RNVVTWT-SMISGYCRA----- 179 (600)
Q Consensus 111 ~~~~~~~~~~~~a~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~-~l~~~~~~~----- 179 (600)
...+...|++++|++.++.-.. .| ..........+.+.|+.++|..++..+.+ |+...|. .+..+..-.
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~ 90 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSD 90 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhccccc
Confidence 4556677888888887776554 33 34455566777777888888888777774 4444433 333333221
Q ss_pred CChhHHHHHHccCCC--CCcchHHHHHHHHHhcCChh-HHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHhcCChhhHHH
Q 007519 180 GEVEEGYCLFRRMPR--KNVVSWTAMIGGFAWNGFHK-ESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQN 256 (600)
Q Consensus 180 g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 256 (600)
.+.+...++++.+.. |...+...+.-.+..-..+. .+...+..+... |+++ +++.|-..|......+-...
T Consensus 91 ~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~K---gvPs---lF~~lk~Ly~d~~K~~~i~~ 164 (517)
T PF12569_consen 91 EDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRK---GVPS---LFSNLKPLYKDPEKAAIIES 164 (517)
T ss_pred ccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhc---CCch---HHHHHHHHHcChhHHHHHHH
Confidence 234555555555543 22222222222222211222 223333333332 4332 33444334433222222222
Q ss_pred HhcccCCCCchhHHHHHHHHHhcCChHHHHHHHhhCCCCChh--hHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC-hh
Q 007519 257 LFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAV--AWTAMISGLVQNELFVEATYLFMEMRAHGVPPL-NA 333 (600)
Q Consensus 257 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~ 333 (600)
++.... ......+.+.... =..-..|... ++.-+...|-..|++++|++..++.+++ .|+ ..
T Consensus 165 l~~~~~-----------~~l~~~~~~~~~~--~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~e 229 (517)
T PF12569_consen 165 LVEEYV-----------NSLESNGSFSNGD--DEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVE 229 (517)
T ss_pred HHHHHH-----------HhhcccCCCCCcc--ccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHH
Confidence 222111 0000000000000 0000112332 3344566667777777777777777765 454 33
Q ss_pred HHHHHHHHHhcccchhhhHHHHHHHhhhcCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCCh----------hhH--
Q 007519 334 TFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDL----------VSW-- 401 (600)
Q Consensus 334 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~----------~~~-- 401 (600)
.|..-.+.+-+.|++.+|...++.+.+.... |..+-+-.+..+.+.|++++|..++.....++. ..|
T Consensus 230 ly~~KarilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~ 308 (517)
T PF12569_consen 230 LYMTKARILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFE 308 (517)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHH
Confidence 4555556777777777777777776665543 566666677777778888888777776664431 122
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHc--CCC-------------CChhHHHHHHHHhcccC-------chHHHHHHHHHH
Q 007519 402 NSMVMGFSHHGLANETLKVFESMLES--GTH-------------PNSVTFLGILSACSHAG-------LVSRGWELFNAM 459 (600)
Q Consensus 402 ~~l~~~~~~~~~~~~a~~~~~~m~~~--~~~-------------p~~~~~~~l~~~~~~~g-------~~~~a~~~~~~~ 459 (600)
.....+|.+.|++..|++-|..+.+. .+. .+..+|..+++..-+.. -...|.+++-.+
T Consensus 309 ~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~~~DQfDFH~Yc~RK~t~r~Y~~~L~~ed~l~~~~~y~raa~~ai~iYl~l 388 (517)
T PF12569_consen 309 TECAEAYLRQGDYGLALKRFHAVLKHFDDFEEDQFDFHSYCLRKMTLRAYVDMLRWEDKLRSHPFYRRAAKGAIRIYLEL 388 (517)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccHHHHHHhhccHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHH
Confidence 22456677778777777666555442 111 12223333332221111 123344444444
Q ss_pred HhhcCCCCCcch-----------HHHHHHHH---hhcCChHHHHHHHH-----------hC----CCCCCHHHHHHHHHH
Q 007519 460 FDVYKIQPGPEH-----------YVSMINLL---GRAGKIKEAEEFVL-----------RL----PFEPDHRIWGALLGA 510 (600)
Q Consensus 460 ~~~~~~~p~~~~-----------~~~l~~~~---~~~g~~~~A~~~~~-----------~~----~~~p~~~~~~~l~~~ 510 (600)
............ ...+..-. .+...-+++.+.-. +. +...|..... .-
T Consensus 389 ~d~~~~~~~~~~~~~~~~~~~~e~Kk~~kK~kK~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~Dp~G---ek 465 (517)
T PF12569_consen 389 HDKPEAKQGEEQEADNENMSAAERKKAKKKAKKAAKKAKKEEAEKAAKKEPKKQQNKSKKKEKVEPKKKDDDPLG---EK 465 (517)
T ss_pred hcCcccccccccccccccCChHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhhhccccccccccCCcCCCCccH---HH
Confidence 432111000000 00000000 11111111111110 00 1111111111 11
Q ss_pred HhhhhCCHHHHHHHHHHHHhhCCCCCCcHHHHhHHHHhhCCcHHHHHHH
Q 007519 511 CGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLR 559 (600)
Q Consensus 511 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 559 (600)
+.....=.++|.++++-+.+..|++..+|..-..+|.+.|.+--|.+-+
T Consensus 466 L~~t~dPLe~A~kfl~pL~~~a~~~~et~~laFeVy~Rk~K~LLaLqaL 514 (517)
T PF12569_consen 466 LLKTEDPLEEAMKFLKPLLELAPDNIETHLLAFEVYLRKGKYLLALQAL 514 (517)
T ss_pred HhcCCcHHHHHHHHHHHHHHhCccchhhHHHHhHHHHhcCcHHHHHHHH
Confidence 2203345688999999999999999999999999999999999888844
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.3e-07 Score=88.57 Aligned_cols=91 Identities=20% Similarity=0.206 Sum_probs=45.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhcCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHhc
Q 007519 369 LENCLISMYAKCGVIDNAYNIFSNMV---SRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPN-SVTFLGILSACS 444 (600)
Q Consensus 369 ~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~ 444 (600)
.|..+...|...|+.++|...|++.. +.+...|+.+...+...|++++|...|++..+. .|+ ...+..+..++.
T Consensus 66 ~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~ 143 (296)
T PRK11189 66 LHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLEL--DPTYNYAYLNRGIALY 143 (296)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH
Confidence 34444445555555555555555443 334445555555555555555555555555542 332 234444444455
Q ss_pred ccCchHHHHHHHHHHHh
Q 007519 445 HAGLVSRGWELFNAMFD 461 (600)
Q Consensus 445 ~~g~~~~a~~~~~~~~~ 461 (600)
..|++++|.+.+++..+
T Consensus 144 ~~g~~~eA~~~~~~al~ 160 (296)
T PRK11189 144 YGGRYELAQDDLLAFYQ 160 (296)
T ss_pred HCCCHHHHHHHHHHHHH
Confidence 55555555555555543
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.02 E-value=4.2e-09 Score=102.59 Aligned_cols=230 Identities=16% Similarity=0.184 Sum_probs=124.1
Q ss_pred eHHHHHHHHHHCCChhHHHHHhhcCCC----------CCcc-cHHHHHHHHHhcCCHhHHHHHHHhccc-------CC--
Q 007519 106 SWNSMVVGLIRNGELNEARKVFNSMPI----------KNVI-SWNAMIAGYVECCMMGEAIVLFEEMEE-------RN-- 165 (600)
Q Consensus 106 ~~~~l~~~~~~~~~~~~a~~~~~~~~~----------~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~-------~~-- 165 (600)
+...|...|...|+++.|..++++..+ +... ..+.+...|...+++++|..+|+++.. ++
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~ 280 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHP 280 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 344477788888888888888877654 2222 222355667777777777777777652 11
Q ss_pred --chhHHHHHHHHHhcCChhHHHHHHccCCC----------CCc-chHHHHHHHHHhcCChhHHHHHHHHHHhhhcCCCC
Q 007519 166 --VVTWTSMISGYCRAGEVEEGYCLFRRMPR----------KNV-VSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNN 232 (600)
Q Consensus 166 --~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----------~~~-~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 232 (600)
..+++.|..+|.+.|++++|...+++..+ +.+ ..++.++..+...+++++|..+++...+.....+.
T Consensus 281 ~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g 360 (508)
T KOG1840|consen 281 AVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPG 360 (508)
T ss_pred HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhcc
Confidence 23455666677777777776666554331 111 12445555556666666666666555544221122
Q ss_pred CC----hhhHHHHHHHHHhcCChhhHHHHhcccCCCCchhHHHHHHHHHhcCChHHHHHHHhhCCCC----ChhhHHHHH
Q 007519 233 CN----VQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDR----DAVAWTAMI 304 (600)
Q Consensus 233 ~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~li 304 (600)
++ ..+++.+...|...|++++|.++++.+.. ..++.... ...+++.+.
T Consensus 361 ~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~------------------------~~~~~~~~~~~~~~~~l~~la 416 (508)
T KOG1840|consen 361 EDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQ------------------------ILRELLGKKDYGVGKPLNQLA 416 (508)
T ss_pred ccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHH------------------------HHHhcccCcChhhhHHHHHHH
Confidence 22 23455555555555555555555554430 00000000 112445555
Q ss_pred HHHHhCCChhHHHHHHHHHH----HCCC-CCC-hhHHHHHHHHHhcccchhhhHHHHHHHh
Q 007519 305 SGLVQNELFVEATYLFMEMR----AHGV-PPL-NATFSVLFGAAGATANIDLGRQIHCVLM 359 (600)
Q Consensus 305 ~~~~~~g~~~~a~~~~~~m~----~~g~-~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 359 (600)
..|.+.+.+.+|.++|.+.. ..|. .|+ ..+|..|...|...|+++.|.++...+.
T Consensus 417 ~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 417 EAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 55666666665555555432 2221 122 2456667777777777777777666444
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.3e-08 Score=96.70 Aligned_cols=191 Identities=17% Similarity=0.176 Sum_probs=136.2
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhcCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHH---
Q 007519 367 LILENCLISMYAKCGVIDNAYNIFSNMV---SRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGIL--- 440 (600)
Q Consensus 367 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~--- 440 (600)
...|..|.......++-..|+..++++. +.|....-.|.-.|...|.-.+|+..|+.-.... |.. ..+.
T Consensus 319 aeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~--p~y---~~l~~a~ 393 (579)
T KOG1125|consen 319 AEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKMLDKWIRNK--PKY---VHLVSAG 393 (579)
T ss_pred HHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhC--ccc---hhccccC
Confidence 3344444444444555555555555444 3445555556666777777777777777765432 110 0000
Q ss_pred --------HHhcccCchHHHHHHHHHHHhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhCC-CCCC-HHHHHHHHHH
Q 007519 441 --------SACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLP-FEPD-HRIWGALLGA 510 (600)
Q Consensus 441 --------~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~ 510 (600)
........+....++|-.+....+..+|+.+...|+-.|.-.|++++|.+.|+.+. .+|+ ...||-+...
T Consensus 394 ~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAt 473 (579)
T KOG1125|consen 394 ENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGAT 473 (579)
T ss_pred ccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHH
Confidence 11222333455666777776665666788899999999999999999999999875 7775 5678888888
Q ss_pred HhhhhCCHHHHHHHHHHHHhhCCCCCCcHHHHhHHHHhhCCcHHHHH-HHHHHh
Q 007519 511 CGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHK-LRMDMG 563 (600)
Q Consensus 511 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~-~~~~~~ 563 (600)
+. ...+.++|+..|.+++++.|....+...|+-.|...|.+++|.+ +++.+.
T Consensus 474 LA-N~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 474 LA-NGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred hc-CCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 88 88899999999999999999999999999999999999999999 666654
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.5e-07 Score=79.29 Aligned_cols=187 Identities=13% Similarity=0.082 Sum_probs=89.6
Q ss_pred HHHHHHhcCChHHHHHHHhcCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-ChhHHHHHHHHhcccCc
Q 007519 373 LISMYAKCGVIDNAYNIFSNMV---SRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHP-NSVTFLGILSACSHAGL 448 (600)
Q Consensus 373 l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~ 448 (600)
|.-.|...|+...|..-+++.. +.+..+|..+...|.+.|+.+.|.+.|++..+. .| +....|....-+|..|.
T Consensus 41 Lal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl--~p~~GdVLNNYG~FLC~qg~ 118 (250)
T COG3063 41 LALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSL--APNNGDVLNNYGAFLCAQGR 118 (250)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhc--CCCccchhhhhhHHHHhCCC
Confidence 3444555555555555555544 223344555555555555555555555555542 22 22344444444455555
Q ss_pred hHHHHHHHHHHHhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhCC-CCCC-HHHHHHHHHHHhhhhCCHHHHHHHHH
Q 007519 449 VSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLP-FEPD-HRIWGALLGACGFCEGNAEIAEHAAK 526 (600)
Q Consensus 449 ~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~~g~~~~a~~~~~ 526 (600)
+++|...|+++.......--..+|..++.+..+.|+++.|.+.+++.. ..|+ +.+...+..... ..|++..|...++
T Consensus 119 ~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~-~~~~y~~Ar~~~~ 197 (250)
T COG3063 119 PEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHY-KAGDYAPARLYLE 197 (250)
T ss_pred hHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHH-hcccchHHHHHHH
Confidence 555555555555431111124455555555555555555555555432 2232 233444444444 5555555555555
Q ss_pred HHHhhCCCCCCcHHHHhHHHHhhCCcHHHHHHHHHH
Q 007519 527 RLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDM 562 (600)
Q Consensus 527 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 562 (600)
+...-.+-+.......+.+-.+.|+.+.+.++-..+
T Consensus 198 ~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL 233 (250)
T COG3063 198 RYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQL 233 (250)
T ss_pred HHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 554433334444444455555555555554444433
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.94 E-value=4e-06 Score=79.48 Aligned_cols=174 Identities=12% Similarity=0.093 Sum_probs=127.3
Q ss_pred hhHHHHHHHHHHHCCCCCChhHHHHHHHHHhcccchhhhHHHHHHHhhhcCCC-chhHHHHHHHHHHhcCChHHHHHHHh
Q 007519 313 FVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESES-DLILENCLISMYAKCGVIDNAYNIFS 391 (600)
Q Consensus 313 ~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~ 391 (600)
.+.....++++...-..--..+|...++...+..-+..|+.+|.++.+.+..+ ++.+++++++.|+. ++.+-|.++|+
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFe 425 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFE 425 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHH
Confidence 56667777776654322223456777787788888999999999999988877 78888889988874 67888999998
Q ss_pred cCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh--hHHHHHHHHhcccCchHHHHHHHHHHHhhcC--
Q 007519 392 NMV---SRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNS--VTFLGILSACSHAGLVSRGWELFNAMFDVYK-- 464 (600)
Q Consensus 392 ~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-- 464 (600)
.-. ..++.--...+..+...|+-..+..+|++....++.|+. ..|..++.--..-|++..+.++-++....+.
T Consensus 426 LGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~ 505 (656)
T KOG1914|consen 426 LGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPAD 505 (656)
T ss_pred HHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchh
Confidence 765 334445566778888889999999999999888666665 6788888888889999999888888776544
Q ss_pred CCCCcchHHHHHHHHhhcCChHH
Q 007519 465 IQPGPEHYVSMINLLGRAGKIKE 487 (600)
Q Consensus 465 ~~p~~~~~~~l~~~~~~~g~~~~ 487 (600)
..|....-..++..|.=.+....
T Consensus 506 qe~~~~~~~~~v~RY~~~d~~~c 528 (656)
T KOG1914|consen 506 QEYEGNETALFVDRYGILDLYPC 528 (656)
T ss_pred hcCCCChHHHHHHHHhhcccccc
Confidence 33333344445555555554443
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.93 E-value=5.9e-07 Score=85.06 Aligned_cols=164 Identities=17% Similarity=0.083 Sum_probs=91.6
Q ss_pred HHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChh-HHHHHHHHhcccCchHHH
Q 007519 374 ISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSV-TFLGILSACSHAGLVSRG 452 (600)
Q Consensus 374 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~g~~~~a 452 (600)
..+|.+.++++.|...|.+...+... -....+....+++........- +.|... -...-...+.+.|++..|
T Consensus 305 g~a~~k~~~~~~ai~~~~kaLte~Rt-----~~~ls~lk~~Ek~~k~~e~~a~--~~pe~A~e~r~kGne~Fk~gdy~~A 377 (539)
T KOG0548|consen 305 GNAYTKREDYEGAIKYYQKALTEHRT-----PDLLSKLKEAEKALKEAERKAY--INPEKAEEEREKGNEAFKKGDYPEA 377 (539)
T ss_pred hhhhhhHHhHHHHHHHHHHHhhhhcC-----HHHHHHHHHHHHHHHHHHHHHh--hChhHHHHHHHHHHHHHhccCHHHH
Confidence 34555566677777766664411111 1112222333444444333322 223321 111123445667777888
Q ss_pred HHHHHHHHhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhCC-CCCCHH-HHHHHHHHHhhhhCCHHHHHHHHHHHH
Q 007519 453 WELFNAMFDVYKIQP-GPEHYVSMINLLGRAGKIKEAEEFVLRLP-FEPDHR-IWGALLGACGFCEGNAEIAEHAAKRLL 529 (600)
Q Consensus 453 ~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~-~~~~l~~~~~~~~g~~~~a~~~~~~~~ 529 (600)
...|.+++.. .| |...|...+-+|.+.|.+..|++-.+... ..|+.. .|.--..++. ...+++.|...|++++
T Consensus 378 v~~YteAIkr---~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~-~mk~ydkAleay~eal 453 (539)
T KOG0548|consen 378 VKHYTEAIKR---DPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALR-AMKEYDKALEAYQEAL 453 (539)
T ss_pred HHHHHHHHhc---CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 7777777754 45 57777777777778887777776665543 445433 3333333444 5677888888888888
Q ss_pred hhCCCCCCcHHHHhHHHHh
Q 007519 530 ELDPLNAPAHVVLCNIYAA 548 (600)
Q Consensus 530 ~~~p~~~~~~~~l~~~~~~ 548 (600)
+.+|++......+.++...
T Consensus 454 e~dp~~~e~~~~~~rc~~a 472 (539)
T KOG0548|consen 454 ELDPSNAEAIDGYRRCVEA 472 (539)
T ss_pred hcCchhHHHHHHHHHHHHH
Confidence 8888666666665555543
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.91 E-value=6.2e-07 Score=84.89 Aligned_cols=215 Identities=15% Similarity=0.086 Sum_probs=139.8
Q ss_pred HHHHHHhcccchhhhHHHHHHHhhhcCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCCh----------hhHHHHHH
Q 007519 337 VLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDL----------VSWNSMVM 406 (600)
Q Consensus 337 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~----------~~~~~l~~ 406 (600)
.+.++..+..++..+.+-+....... .+...++....+|...|.+..+............ ..+..+..
T Consensus 229 ~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~ 306 (539)
T KOG0548|consen 229 ELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGN 306 (539)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhh
Confidence 34444445555566666655555544 3444445555566666666555554444331111 11222344
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCCCc-chHHHHHHHHhhcCCh
Q 007519 407 GFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGP-EHYVSMINLLGRAGKI 485 (600)
Q Consensus 407 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~ 485 (600)
++.+.++++.++..|.+.......|+..+ +....+++....+... -+.|.. .-...-+..+.+.|++
T Consensus 307 a~~k~~~~~~ai~~~~kaLte~Rt~~~ls---------~lk~~Ek~~k~~e~~a---~~~pe~A~e~r~kGne~Fk~gdy 374 (539)
T KOG0548|consen 307 AYTKREDYEGAIKYYQKALTEHRTPDLLS---------KLKEAEKALKEAERKA---YINPEKAEEEREKGNEAFKKGDY 374 (539)
T ss_pred hhhhHHhHHHHHHHHHHHhhhhcCHHHHH---------HHHHHHHHHHHHHHHH---hhChhHHHHHHHHHHHHHhccCH
Confidence 56667888888888888766554544322 2233444444443332 345542 1222236778899999
Q ss_pred HHHHHHHHhCC-CCC-CHHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCCcHHHHhHHHHhhCCcHHHHHHHHHHh
Q 007519 486 KEAEEFVLRLP-FEP-DHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMG 563 (600)
Q Consensus 486 ~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 563 (600)
..|.+.++++. ..| |...|.+...++. +.|.+..|+.-.+..++++|+....|..=+.++....+|++|.+.+.+-.
T Consensus 375 ~~Av~~YteAIkr~P~Da~lYsNRAac~~-kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eal 453 (539)
T KOG0548|consen 375 PEAVKHYTEAIKRDPEDARLYSNRAACYL-KLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEAL 453 (539)
T ss_pred HHHHHHHHHHHhcCCchhHHHHHHHHHHH-HHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999975 556 4567777777777 99999999999999999999999999999999999999999999776655
Q ss_pred hcC
Q 007519 564 LKG 566 (600)
Q Consensus 564 ~~~ 566 (600)
+.+
T Consensus 454 e~d 456 (539)
T KOG0548|consen 454 ELD 456 (539)
T ss_pred hcC
Confidence 443
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.89 E-value=3.8e-08 Score=90.60 Aligned_cols=249 Identities=12% Similarity=0.091 Sum_probs=152.7
Q ss_pred HHHhcCChHHHHHHHhhCCC--C--ChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhcccchhh
Q 007519 275 GYLSVGQVSNAYYLFHNMPD--R--DAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDL 350 (600)
Q Consensus 275 ~~~~~~~~~~A~~~~~~~~~--~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~ 350 (600)
-+.-.|++..++.-.+ ... + +.....-+.+++...|+++.++. ++... -.|.......+...+...++-+.
T Consensus 10 n~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~---ei~~~-~~~~l~av~~la~y~~~~~~~e~ 84 (290)
T PF04733_consen 10 NQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLS---EIKKS-SSPELQAVRLLAEYLSSPSDKES 84 (290)
T ss_dssp HHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHH---HS-TT-SSCCCHHHHHHHHHHCTSTTHHC
T ss_pred HHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHH---HhccC-CChhHHHHHHHHHHHhCccchHH
Confidence 3445788888886554 222 1 22344556778888888776543 33333 26666666555555554444455
Q ss_pred hHHHHHHHhhhcCC-CchhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 007519 351 GRQIHCVLMKTESE-SDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGT 429 (600)
Q Consensus 351 a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~ 429 (600)
+..-+......... .+..+.......+...|++++|++++... .+.......+..+.+.++++.|.+.++.|.+.
T Consensus 85 ~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~-- 160 (290)
T PF04733_consen 85 ALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQI-- 160 (290)
T ss_dssp HHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--
T ss_pred HHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--
Confidence 54444433333322 23333334445566788899988888776 56666677788888899999999999888763
Q ss_pred CCChhHHHHHHHHhc----ccCchHHHHHHHHHHHhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHH
Q 007519 430 HPNSVTFLGILSACS----HAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRL-PFEP-DHRI 503 (600)
Q Consensus 430 ~p~~~~~~~l~~~~~----~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~ 503 (600)
..| .+...+..++. ..+.+..|.-+|+++.+. ..+++.+.+.++.+....|++++|.+++.+. ...| ++.+
T Consensus 161 ~eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~--~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~ 237 (290)
T PF04733_consen 161 DED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDK--FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDT 237 (290)
T ss_dssp SCC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC--S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHH
T ss_pred CCc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHH
Confidence 333 33344444432 234688888899988763 4567778888888888888888888888774 3444 3455
Q ss_pred HHHHHHHHhhhhCCH-HHHHHHHHHHHhhCCCCC
Q 007519 504 WGALLGACGFCEGNA-EIAEHAAKRLLELDPLNA 536 (600)
Q Consensus 504 ~~~l~~~~~~~~g~~-~~a~~~~~~~~~~~p~~~ 536 (600)
+.+++.... ..|+. +.+.+.+.++....|+++
T Consensus 238 LaNliv~~~-~~gk~~~~~~~~l~qL~~~~p~h~ 270 (290)
T PF04733_consen 238 LANLIVCSL-HLGKPTEAAERYLSQLKQSNPNHP 270 (290)
T ss_dssp HHHHHHHHH-HTT-TCHHHHHHHHHCHHHTTTSH
T ss_pred HHHHHHHHH-HhCCChhHHHHHHHHHHHhCCCCh
Confidence 666666555 66766 667788888888888433
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.89 E-value=3.1e-06 Score=82.50 Aligned_cols=255 Identities=11% Similarity=0.011 Sum_probs=145.1
Q ss_pred HHHHhCCChhHHHHHHHHHHHCCCCCChh-HHHHHHHHHhc----ccchhhhHHHHHHHhhhcCCCchhHHHHHHHHHHh
Q 007519 305 SGLVQNELFVEATYLFMEMRAHGVPPLNA-TFSVLFGAAGA----TANIDLGRQIHCVLMKTESESDLILENCLISMYAK 379 (600)
Q Consensus 305 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 379 (600)
..+...|++++|...+++..+. .|+.. .+.. ...+.. .+....+...+.. .....+........+...+..
T Consensus 51 ~~~~~~g~~~~A~~~~~~~l~~--~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~a~~~~~ 126 (355)
T cd05804 51 LSAWIAGDLPKALALLEQLLDD--YPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPL-WAPENPDYWYLLGMLAFGLEE 126 (355)
T ss_pred HHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHH-hHHHHHhcccccCchhHHHHHhc-cCcCCCCcHHHHHHHHHHHHH
Confidence 3456678888888888877765 34332 3321 112222 3333444444333 111112223344455667788
Q ss_pred cCChHHHHHHHhcCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCCh--hHHHHHHHHhcccCchHHHH
Q 007519 380 CGVIDNAYNIFSNMV---SRDLVSWNSMVMGFSHHGLANETLKVFESMLESGT-HPNS--VTFLGILSACSHAGLVSRGW 453 (600)
Q Consensus 380 ~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~p~~--~~~~~l~~~~~~~g~~~~a~ 453 (600)
.|++++|...+++.. +.+...+..+..++...|++++|...+++...... .|+. ..+..+...+...|++++|.
T Consensus 127 ~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~ 206 (355)
T cd05804 127 AGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAAL 206 (355)
T ss_pred cCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHH
Confidence 888999988888876 44566777788888889999999999888776421 1222 23456677788889999999
Q ss_pred HHHHHHHhhcCCCCCcchH-H--HHHHHHhhcCChHHHHHH---HHhCC-CCCC-HHHH--HHHHHHHhhhhCCHHHHHH
Q 007519 454 ELFNAMFDVYKIQPGPEHY-V--SMINLLGRAGKIKEAEEF---VLRLP-FEPD-HRIW--GALLGACGFCEGNAEIAEH 523 (600)
Q Consensus 454 ~~~~~~~~~~~~~p~~~~~-~--~l~~~~~~~g~~~~A~~~---~~~~~-~~p~-~~~~--~~l~~~~~~~~g~~~~a~~ 523 (600)
++++++.......+..... + .+...+...|..+.+.+. .+... ..|. ...+ .....++. ..|+.+.|..
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~-~~~~~~~a~~ 285 (355)
T cd05804 207 AIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALA-GAGDKDALDK 285 (355)
T ss_pred HHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHh-cCCCHHHHHH
Confidence 9998875421111111111 1 223333444433333322 11111 1011 1112 23344455 7888999998
Q ss_pred HHHHHHhhCCC---------CCCcHHHHhHHHHhhCCcHHHHHHHHHHhh
Q 007519 524 AAKRLLELDPL---------NAPAHVVLCNIYAASGRHVEEHKLRMDMGL 564 (600)
Q Consensus 524 ~~~~~~~~~p~---------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 564 (600)
.++.+....-. ........+.++...|++++|.+.+.....
T Consensus 286 ~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~ 335 (355)
T cd05804 286 LLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRD 335 (355)
T ss_pred HHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 88887662211 234455667778899999999996655443
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.7e-07 Score=86.34 Aligned_cols=80 Identities=18% Similarity=0.286 Sum_probs=34.2
Q ss_pred ChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCC-CcchHHHHHHHHhhcCCh-HHHHH
Q 007519 413 LANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQP-GPEHYVSMINLLGRAGKI-KEAEE 490 (600)
Q Consensus 413 ~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~-~~A~~ 490 (600)
.+.+|..+|+++.+. ..++..+.+.+..++...|++++|.++++++... .| ++.+...++.+....|+. +.+.+
T Consensus 182 ~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~---~~~~~d~LaNliv~~~~~gk~~~~~~~ 257 (290)
T PF04733_consen 182 KYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEK---DPNDPDTLANLIVCSLHLGKPTEAAER 257 (290)
T ss_dssp CCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC----CCHHHHHHHHHHHHHHTT-TCHHHHH
T ss_pred hHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh---ccCCHHHHHHHHHHHHHhCCChhHHHH
Confidence 345555555554332 3344444444444455555555555555544321 23 234444444444444444 33444
Q ss_pred HHHhCC
Q 007519 491 FVLRLP 496 (600)
Q Consensus 491 ~~~~~~ 496 (600)
++..+.
T Consensus 258 ~l~qL~ 263 (290)
T PF04733_consen 258 YLSQLK 263 (290)
T ss_dssp HHHHCH
T ss_pred HHHHHH
Confidence 444443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.83 E-value=8.3e-06 Score=72.87 Aligned_cols=187 Identities=13% Similarity=0.107 Sum_probs=93.7
Q ss_pred cccchhhhHHHHHHHhhhcCCCchhHHHHHHHHHHhcCChHHHHHHHhcC---CCCChhhHHHHHHHHHhcCChHHHHHH
Q 007519 344 ATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNM---VSRDLVSWNSMVMGFSHHGLANETLKV 420 (600)
Q Consensus 344 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~ 420 (600)
-.|+...+......+.+.. +.+...+..-..+|...|++..|+.-++.. ...+...+-.+-..+...|+.+.++..
T Consensus 167 ~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~ 245 (504)
T KOG0624|consen 167 GSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKE 245 (504)
T ss_pred cCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHH
Confidence 3444444444444443321 224444445555555555555554443332 234444444445555555555555555
Q ss_pred HHHHHHcCCCCChhH----HHHH---------HHHhcccCchHHHHHHHHHHHhhcCCCCC-----cchHHHHHHHHhhc
Q 007519 421 FESMLESGTHPNSVT----FLGI---------LSACSHAGLVSRGWELFNAMFDVYKIQPG-----PEHYVSMINLLGRA 482 (600)
Q Consensus 421 ~~~m~~~~~~p~~~~----~~~l---------~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~ 482 (600)
.++..+ +.|+... |..+ +......+.+.++.+-.+...+. .|. ...+..+-.++...
T Consensus 246 iRECLK--ldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~---ep~~~~ir~~~~r~~c~C~~~d 320 (504)
T KOG0624|consen 246 IRECLK--LDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKN---EPEETMIRYNGFRVLCTCYRED 320 (504)
T ss_pred HHHHHc--cCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc---CCcccceeeeeeheeeeccccc
Confidence 555543 3444321 1111 01123345555555555555542 332 22333445555666
Q ss_pred CChHHHHHHHHhCC-CCCC-HHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCC
Q 007519 483 GKIKEAEEFVLRLP-FEPD-HRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAP 537 (600)
Q Consensus 483 g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 537 (600)
|++.+|++...+.. ..|+ ..++-.-..++. -..+++.|+.-|+++.+.+|+|..
T Consensus 321 ~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l-~dE~YD~AI~dye~A~e~n~sn~~ 376 (504)
T KOG0624|consen 321 EQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYL-GDEMYDDAIHDYEKALELNESNTR 376 (504)
T ss_pred CCHHHHHHHHHHHHhcCchHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHhcCcccHH
Confidence 67777776666543 4454 455655666666 666677777777777776665543
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.77 E-value=6.3e-06 Score=73.64 Aligned_cols=305 Identities=13% Similarity=0.093 Sum_probs=208.2
Q ss_pred ChhhHHHHHHHHHhcCChhhHHHHhcccCCCCchhHHHHH---HHHHhcCChHHHHHHHhhCCCCChhhHHH---HHHHH
Q 007519 234 NVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMI---DGYLSVGQVSNAYYLFHNMPDRDAVAWTA---MISGL 307 (600)
Q Consensus 234 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~---~~~~~~~~~~~A~~~~~~~~~~~~~~~~~---li~~~ 307 (600)
++.--.-+.+.+...|++..|+..|......|+..|.++. ..|...|+...|+.-+.++.+..+..+.+ -...+
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vl 116 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVL 116 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhh
Confidence 4444556777888888999999999888877777776664 46777888888877777766532223322 33467
Q ss_pred HhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhcccchhhhHHHHHHHhhhcCCCchhHHHHHHHHHHhcCChHHHH
Q 007519 308 VQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAY 387 (600)
Q Consensus 308 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 387 (600)
.+.|.++.|..=|+..++. .|+..+-. .+..+....++- ......+..+...|+...|+
T Consensus 117 lK~Gele~A~~DF~~vl~~--~~s~~~~~---eaqskl~~~~e~----------------~~l~~ql~s~~~~GD~~~ai 175 (504)
T KOG0624|consen 117 LKQGELEQAEADFDQVLQH--EPSNGLVL---EAQSKLALIQEH----------------WVLVQQLKSASGSGDCQNAI 175 (504)
T ss_pred hhcccHHHHHHHHHHHHhc--CCCcchhH---HHHHHHHhHHHH----------------HHHHHHHHHHhcCCchhhHH
Confidence 7888888888888888876 34332211 111111111111 11122344455678999998
Q ss_pred HHHhcCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccCchHHHHHHHHHHHhhcC
Q 007519 388 NIFSNMV---SRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYK 464 (600)
Q Consensus 388 ~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 464 (600)
.....+. +.|...+..-..+|...|++..|+.=++...+.. ..+..++--+-..+...|+.+.++..+++.. .
T Consensus 176 ~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECL---K 251 (504)
T KOG0624|consen 176 EMITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECL---K 251 (504)
T ss_pred HHHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHH---c
Confidence 8888775 5678888888899999999999998887776643 3344555556677788899999999998887 4
Q ss_pred CCCCc-chHHH---H---------HHHHhhcCChHHHHHHHHhC-CCCCCH--HHH---HHHHHHHhhhhCCHHHHHHHH
Q 007519 465 IQPGP-EHYVS---M---------INLLGRAGKIKEAEEFVLRL-PFEPDH--RIW---GALLGACGFCEGNAEIAEHAA 525 (600)
Q Consensus 465 ~~p~~-~~~~~---l---------~~~~~~~g~~~~A~~~~~~~-~~~p~~--~~~---~~l~~~~~~~~g~~~~a~~~~ 525 (600)
+.||- .+|.. | +....+.++|.++.+..++. ...|.. ..+ ..+-.++. ..|++.+|++..
T Consensus 252 ldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~-~d~~~~eAiqqC 330 (504)
T KOG0624|consen 252 LDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYR-EDEQFGEAIQQC 330 (504)
T ss_pred cCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeeccc-ccCCHHHHHHHH
Confidence 57762 22221 1 12334667777777776663 455542 122 22333344 789999999999
Q ss_pred HHHHhhCCCCCCcHHHHhHHHHhhCCcHHHHHHHHHHhh
Q 007519 526 KRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGL 564 (600)
Q Consensus 526 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 564 (600)
.+.++.+|+|..++..-+.+|.-...+++|+.=++...+
T Consensus 331 ~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e 369 (504)
T KOG0624|consen 331 KEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALE 369 (504)
T ss_pred HHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999996655544
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.75 E-value=4.7e-06 Score=72.90 Aligned_cols=279 Identities=8% Similarity=-0.025 Sum_probs=188.5
Q ss_pred chhHHHHHHHhcCChhhHHHHhccCCC--C-CcchHHHHHHHHHcCCChhHHHHHhhhcCC--CChhhHHH-HHHHHHhc
Q 007519 13 HLTSSITKYSKRGFIDEAKALFQLMPQ--R-NVVSYNAMLSGFLQNGRLSEARRLFEEMPE--RNVVSWTA-MICGLADA 86 (600)
Q Consensus 13 ~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~-l~~~~~~~ 86 (600)
-++..+..+.+..++++|++++..-.+ | +......|..+|....++..|-..|+++-. |....|.. -.+.+.+.
T Consensus 12 eftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A 91 (459)
T KOG4340|consen 12 EFTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKA 91 (459)
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHh
Confidence 367888889999999999999988765 3 555677778889999999999999999876 54444433 24567789
Q ss_pred CChHHHHHHhhcCCC-CCceeHHHHHH--HHHHCCChhHHHHHhhcCCC-CCcccHHHHHHHHHhcCCHhHHHHHHHhcc
Q 007519 87 GRVCEARKLFEEMPE-RNVVSWNSMVV--GLIRNGELNEARKVFNSMPI-KNVISWNAMIAGYVECCMMGEAIVLFEEME 162 (600)
Q Consensus 87 g~~~~A~~~~~~~~~-~~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 162 (600)
+.+.+|+++...|.. ++...-..-+. .....+|+..+..+.++... .+..+.........+.|+++.|.+-|+...
T Consensus 92 ~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAl 171 (459)
T KOG4340|consen 92 CIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAAL 171 (459)
T ss_pred cccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHH
Confidence 999999999999887 33332222222 23457899999999999984 666666666677778999999999999888
Q ss_pred cC----CchhHHHHHHHHHhcCChhHHHHHHccCCC-----------------CCcc---------------hHHHHHHH
Q 007519 163 ER----NVVTWTSMISGYCRAGEVEEGYCLFRRMPR-----------------KNVV---------------SWTAMIGG 206 (600)
Q Consensus 163 ~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----------------~~~~---------------~~~~li~~ 206 (600)
+. ....|+. .-++.+.|+.+.|++...++.+ +|+. ++|.-...
T Consensus 172 qvsGyqpllAYni-ALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAI 250 (459)
T KOG4340|consen 172 QVSGYQPLLAYNL-ALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAI 250 (459)
T ss_pred hhcCCCchhHHHH-HHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhh
Confidence 52 2344544 4456677899999988877653 1211 12333333
Q ss_pred HHhcCChhHHHHHHHHHHhhhcCCCCCChhhHHHHHH--HHHhcCChhhHHHHhcccCCCCchhHHHHHHHHHhcCChHH
Q 007519 207 FAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMIN--GYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSN 284 (600)
Q Consensus 207 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 284 (600)
+.+.|+++.|.+.+.+|--. ..-..|+.|...+.- +-.+-++--.-++++-.+.+-...++..++-.|++..-++-
T Consensus 251 eyq~~n~eAA~eaLtDmPPR--aE~elDPvTLHN~Al~n~~~~p~~g~~KLqFLL~~nPfP~ETFANlLllyCKNeyf~l 328 (459)
T KOG4340|consen 251 EYQLRNYEAAQEALTDMPPR--AEEELDPVTLHNQALMNMDARPTEGFEKLQFLLQQNPFPPETFANLLLLYCKNEYFDL 328 (459)
T ss_pred hhhcccHHHHHHHhhcCCCc--ccccCCchhhhHHHHhcccCCccccHHHHHHHHhcCCCChHHHHHHHHHHhhhHHHhH
Confidence 45677888888777777432 122345556554432 22222332333344444445566677788888888888888
Q ss_pred HHHHHhhCCC
Q 007519 285 AYYLFHNMPD 294 (600)
Q Consensus 285 A~~~~~~~~~ 294 (600)
|-.++.+-..
T Consensus 329 AADvLAEn~~ 338 (459)
T KOG4340|consen 329 AADVLAENAH 338 (459)
T ss_pred HHHHHhhCcc
Confidence 8777766544
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.75 E-value=2.8e-06 Score=74.25 Aligned_cols=281 Identities=10% Similarity=0.084 Sum_probs=153.6
Q ss_pred HHHHHHHHHhcCChhhHHHHhcccCCC---CchhHHHHHHHHHhcCChHHHHHHHhhCCC--CChhhHHH-HHHHHHhCC
Q 007519 238 CNSMINGYIRFGRLEEAQNLFDTVPVR---DEISWTSMIDGYLSVGQVSNAYYLFHNMPD--RDAVAWTA-MISGLVQNE 311 (600)
Q Consensus 238 ~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~-li~~~~~~g 311 (600)
+.+++..+.+..++..|++++....+. +....+.+..+|....++..|-..|+++.. |...-|.. -...+-+.+
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~ 92 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKAC 92 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhc
Confidence 445555566667777777776655432 344556667777777777777777776654 32222221 233455666
Q ss_pred ChhHHHHHHHHHHHCCCCCChhHHHHHHH--HHhcccchhhhHHHHHHHhhhcCCCchhHHHHHHHHHHhcCChHHHHHH
Q 007519 312 LFVEATYLFMEMRAHGVPPLNATFSVLFG--AAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNI 389 (600)
Q Consensus 312 ~~~~a~~~~~~m~~~g~~p~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 389 (600)
.+..|+++...|... |+...-..-+. ...+. +++..+..+
T Consensus 93 i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse-----------------------------------~Dl~g~rsL 134 (459)
T KOG4340|consen 93 IYADALRVAFLLLDN---PALHSRVLQLQAAIKYSE-----------------------------------GDLPGSRSL 134 (459)
T ss_pred ccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhccc-----------------------------------ccCcchHHH
Confidence 677777776666542 21111111111 11233 344444444
Q ss_pred HhcCC-CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccCchHHHHHHHHHHHhhcCCC--
Q 007519 390 FSNMV-SRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQ-- 466 (600)
Q Consensus 390 ~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-- 466 (600)
.++.. ..+..+.+.......+.|++++|.+-|+...+-+--.....|+..+ +..+.|+.+.|++...+++++ |+.
T Consensus 135 veQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieR-G~r~H 212 (459)
T KOG4340|consen 135 VEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIER-GIRQH 212 (459)
T ss_pred HHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHh-hhhcC
Confidence 44444 2333333333333344455555555555444432111222333222 222344444444444444433 211
Q ss_pred -----------CC---------------cchHHHHHHHHhhcCChHHHHHHHHhCC----CCCCHHHHHHHHHHHhhhhC
Q 007519 467 -----------PG---------------PEHYVSMINLLGRAGKIKEAEEFVLRLP----FEPDHRIWGALLGACGFCEG 516 (600)
Q Consensus 467 -----------p~---------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~~~~~~~l~~~~~~~~g 516 (600)
|| ...+|.-...+.+.|+++.|.+.+..|| ...|+.|++.+.-.- ..+
T Consensus 213 PElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n--~~~ 290 (459)
T KOG4340|consen 213 PELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN--MDA 290 (459)
T ss_pred CccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc--ccC
Confidence 11 1122233344568899999999999987 445777777664432 356
Q ss_pred CHHHHHHHHHHHHhhCCCCCCcHHHHhHHHHhhCCcHHHHHHHH
Q 007519 517 NAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRM 560 (600)
Q Consensus 517 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 560 (600)
+.....+-++-+++++|--+.++..+...|++..-++-|..++-
T Consensus 291 ~p~~g~~KLqFLL~~nPfP~ETFANlLllyCKNeyf~lAADvLA 334 (459)
T KOG4340|consen 291 RPTEGFEKLQFLLQQNPFPPETFANLLLLYCKNEYFDLAADVLA 334 (459)
T ss_pred CccccHHHHHHHHhcCCCChHHHHHHHHHHhhhHHHhHHHHHHh
Confidence 67777777778888899777899999999999998888888663
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.74 E-value=2e-05 Score=76.82 Aligned_cols=55 Identities=9% Similarity=-0.037 Sum_probs=25.6
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhcccchhhhHHHHHH
Q 007519 302 AMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCV 357 (600)
Q Consensus 302 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 357 (600)
.+...+...|++++|...+++..+.. +.+...+..+..++...|++++|...+..
T Consensus 119 ~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~ 173 (355)
T cd05804 119 MLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMES 173 (355)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 33445556666666666666665542 22222333333344444444444444443
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.71 E-value=2.6e-05 Score=86.38 Aligned_cols=318 Identities=13% Similarity=0.026 Sum_probs=178.0
Q ss_pred HHhcCChhhHHHHhcccC----CCCchhHHHHHHHHHhcCChHHHHHHHhhCCC----C----C--h--hhHHHHHHHHH
Q 007519 245 YIRFGRLEEAQNLFDTVP----VRDEISWTSMIDGYLSVGQVSNAYYLFHNMPD----R----D--A--VAWTAMISGLV 308 (600)
Q Consensus 245 ~~~~~~~~~a~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~----~--~--~~~~~li~~~~ 308 (600)
....|+++.+..++..+. ..++.........+...|++++|...+..... . + . .....+...+.
T Consensus 384 l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 463 (903)
T PRK04841 384 LFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAI 463 (903)
T ss_pred HHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHH
Confidence 344566666666666553 12333333444555667888887777765421 1 1 1 11122233456
Q ss_pred hCCChhHHHHHHHHHHHCCCCCCh----hHHHHHHHHHhcccchhhhHHHHHHHhhhcCC---C--chhHHHHHHHHHHh
Q 007519 309 QNELFVEATYLFMEMRAHGVPPLN----ATFSVLFGAAGATANIDLGRQIHCVLMKTESE---S--DLILENCLISMYAK 379 (600)
Q Consensus 309 ~~g~~~~a~~~~~~m~~~g~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~--~~~~~~~l~~~~~~ 379 (600)
..|++++|...+++....-...+. .....+...+...|+++.|...+......... + .......+...+..
T Consensus 464 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~ 543 (903)
T PRK04841 464 NDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFA 543 (903)
T ss_pred hCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH
Confidence 778888888888877653111111 12333444566788888888877765542111 1 12234455666777
Q ss_pred cCChHHHHHHHhcCCC-------C----ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcC--CCCC--hhHHHHHHHHhc
Q 007519 380 CGVIDNAYNIFSNMVS-------R----DLVSWNSMVMGFSHHGLANETLKVFESMLESG--THPN--SVTFLGILSACS 444 (600)
Q Consensus 380 ~~~~~~A~~~~~~~~~-------~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~--~~p~--~~~~~~l~~~~~ 444 (600)
.|++++|...+++... + ....+..+...+...|++++|...+.+..... ..+. ...+..+.....
T Consensus 544 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~ 623 (903)
T PRK04841 544 QGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISL 623 (903)
T ss_pred CCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHH
Confidence 8888888887766531 1 11233344555667788888888887765431 1121 223333445666
Q ss_pred ccCchHHHHHHHHHHHhhcCCCCCcchH-----HHHHHHHhhcCChHHHHHHHHhCCCC--CCHHH----HHHHHHHHhh
Q 007519 445 HAGLVSRGWELFNAMFDVYKIQPGPEHY-----VSMINLLGRAGKIKEAEEFVLRLPFE--PDHRI----WGALLGACGF 513 (600)
Q Consensus 445 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~-----~~l~~~~~~~g~~~~A~~~~~~~~~~--p~~~~----~~~l~~~~~~ 513 (600)
..|+.+.|.+.+..+............+ ...+..+...|+.+.|.+++...... ..... +..+..++.
T Consensus 624 ~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~- 702 (903)
T PRK04841 624 ARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQI- 702 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHH-
Confidence 7788888888887775421111111001 11123445578888888887665411 11111 233444455
Q ss_pred hhCCHHHHHHHHHHHHhhCC------CCCCcHHHHhHHHHhhCCcHHHHHHHHHHh
Q 007519 514 CEGNAEIAEHAAKRLLELDP------LNAPAHVVLCNIYAASGRHVEEHKLRMDMG 563 (600)
Q Consensus 514 ~~g~~~~a~~~~~~~~~~~p------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 563 (600)
..|+.++|...++++.+... ....++..++.++.+.|+.++|...+....
T Consensus 703 ~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al 758 (903)
T PRK04841 703 LLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEAL 758 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 77888888888888877421 122456677788888888888888554443
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.1e-06 Score=79.81 Aligned_cols=180 Identities=11% Similarity=-0.001 Sum_probs=112.2
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHhcCC--CC-Ch---hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChh----H
Q 007519 366 DLILENCLISMYAKCGVIDNAYNIFSNMV--SR-DL---VSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSV----T 435 (600)
Q Consensus 366 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~-~~---~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~----~ 435 (600)
....+..+...+...|++++|...|+++. .| +. ..+..+..++...|++++|...++++.+. .|+.. +
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a 109 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL--HPNHPDADYA 109 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCchHHH
Confidence 44455566667777777777777777665 12 22 35566667777777777777777777764 23221 2
Q ss_pred HHHHHHHhccc--------CchHHHHHHHHHHHhhcCCCCCc-chHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHH
Q 007519 436 FLGILSACSHA--------GLVSRGWELFNAMFDVYKIQPGP-EHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGA 506 (600)
Q Consensus 436 ~~~l~~~~~~~--------g~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ 506 (600)
+..+..++... |+++.|.+.++.+.+. .|+. ..+..+..... ..... ......
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~~~----~~~~~-----------~~~~~~ 171 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRMDY----LRNRL-----------AGKELY 171 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHHHH----HHHHH-----------HHHHHH
Confidence 33333444333 5677777777777654 3432 22221111100 00000 000113
Q ss_pred HHHHHhhhhCCHHHHHHHHHHHHhhCCCCC---CcHHHHhHHHHhhCCcHHHHHHHHHHhhcC
Q 007519 507 LLGACGFCEGNAEIAEHAAKRLLELDPLNA---PAHVVLCNIYAASGRHVEEHKLRMDMGLKG 566 (600)
Q Consensus 507 l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 566 (600)
+...+. ..|++.+|+..++++++..|+++ ..+..++.++...|++++|..+++.+....
T Consensus 172 ~a~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~ 233 (235)
T TIGR03302 172 VARFYL-KRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANY 233 (235)
T ss_pred HHHHHH-HcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 344556 88999999999999999987654 688999999999999999999888876543
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.2e-06 Score=76.10 Aligned_cols=118 Identities=10% Similarity=0.053 Sum_probs=75.7
Q ss_pred cCchHHHHHHHHHHHhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHhhhhCC--HHH
Q 007519 446 AGLVSRGWELFNAMFDVYKIQP-GPEHYVSMINLLGRAGKIKEAEEFVLRLP-FEP-DHRIWGALLGACGFCEGN--AEI 520 (600)
Q Consensus 446 ~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~g~--~~~ 520 (600)
.++.+++...++...+. .| +...|..|+..|...|++++|...+++.. ..| +...+..+..++....|+ .++
T Consensus 52 ~~~~~~~i~~l~~~L~~---~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~ 128 (198)
T PRK10370 52 QQTPEAQLQALQDKIRA---NPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQ 128 (198)
T ss_pred chhHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHH
Confidence 45556666666665543 44 56677777777777777777777777653 444 344455555443215555 477
Q ss_pred HHHHHHHHHhhCCCCCCcHHHHhHHHHhhCCcHHHHHHHHHHhhcC
Q 007519 521 AEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKG 566 (600)
Q Consensus 521 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 566 (600)
|..+++++++.+|+++.++..++.++.+.|++++|...|+.+.+..
T Consensus 129 A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 129 TREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLN 174 (198)
T ss_pred HHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 7777777777777777777777777777777777777666665443
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.66 E-value=3.5e-07 Score=75.11 Aligned_cols=108 Identities=13% Similarity=-0.026 Sum_probs=72.0
Q ss_pred HHHHHHhcccCchHHHHHHHHHHHhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHhh
Q 007519 437 LGILSACSHAGLVSRGWELFNAMFDVYKIQP-GPEHYVSMINLLGRAGKIKEAEEFVLRLP-FEP-DHRIWGALLGACGF 513 (600)
Q Consensus 437 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~ 513 (600)
.....++...|++++|...|+.+.. ..| +...+..++.++.+.|++++|...|++.. ..| +...+..+..++.
T Consensus 28 ~~~g~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~- 103 (144)
T PRK15359 28 YASGYASWQEGDYSRAVIDFSWLVM---AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLK- 103 (144)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH---cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH-
Confidence 3445556677777777777777664 345 56667777777777777777777777753 344 4455555555666
Q ss_pred hhCCHHHHHHHHHHHHhhCCCCCCcHHHHhHHHHh
Q 007519 514 CEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAA 548 (600)
Q Consensus 514 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 548 (600)
..|+.++|+..+++++++.|+++..+...+.++..
T Consensus 104 ~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~ 138 (144)
T PRK15359 104 MMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIM 138 (144)
T ss_pred HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 77777777777777777777777777666665543
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.66 E-value=4.4e-06 Score=87.81 Aligned_cols=233 Identities=10% Similarity=0.058 Sum_probs=174.5
Q ss_pred hhHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHhcCChhhHHHHhcccCC--------CCchhHHHHHHHHHhcCChHH
Q 007519 213 HKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPV--------RDEISWTSMIDGYLSVGQVSN 284 (600)
Q Consensus 213 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~~~ 284 (600)
++.|.+.-+.++. .+.++..|-..+......+++++|.++.+++.+ .-..+|.++++.-..-|.-+.
T Consensus 1441 pesaeDferlvrs-----sPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~ees 1515 (1710)
T KOG1070|consen 1441 PESAEDFERLVRS-----SPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEES 1515 (1710)
T ss_pred CcCHHHHHHHHhc-----CCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHH
Confidence 3445555555553 244466777888888888999999888888762 134478888888888888888
Q ss_pred HHHHHhhCCC-C-ChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhcccchhhhHHHHHHHhhhc
Q 007519 285 AYYLFHNMPD-R-DAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTE 362 (600)
Q Consensus 285 A~~~~~~~~~-~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 362 (600)
..++|+++.+ - ....|..|...|.+.+.+++|.++|+.|.+. ..-....|...+..+.+.++-+.|+.++.++.+.-
T Consensus 1516 l~kVFeRAcqycd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~l 1594 (1710)
T KOG1070|consen 1516 LKKVFERACQYCDAYTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSL 1594 (1710)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhc
Confidence 8888888766 2 3457888999999999999999999999876 34566778888888888888899999998877764
Q ss_pred CC-CchhHHHHHHHHHHhcCChHHHHHHHhcCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh--hHH
Q 007519 363 SE-SDLILENCLISMYAKCGVIDNAYNIFSNMV---SRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNS--VTF 436 (600)
Q Consensus 363 ~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~--~~~ 436 (600)
.+ -......-.++.-.+.|+.+.++.+|+... +.-...|+.++..-.++|+.+.+..+|++....++.|.. ..|
T Consensus 1595 Pk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfff 1674 (1710)
T KOG1070|consen 1595 PKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFF 1674 (1710)
T ss_pred chhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHH
Confidence 43 234455566677778899999999998876 456778999999999999999999999999988887765 445
Q ss_pred HHHHHHhcccCchHH
Q 007519 437 LGILSACSHAGLVSR 451 (600)
Q Consensus 437 ~~l~~~~~~~g~~~~ 451 (600)
.-.+..--..|+-..
T Consensus 1675 KkwLeyEk~~Gde~~ 1689 (1710)
T KOG1070|consen 1675 KKWLEYEKSHGDEKN 1689 (1710)
T ss_pred HHHHHHHHhcCchhh
Confidence 555554444454333
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.60 E-value=2.1e-06 Score=82.24 Aligned_cols=138 Identities=16% Similarity=0.098 Sum_probs=99.8
Q ss_pred HHHHHHHHHH-HcCCCCChhHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHH
Q 007519 416 ETLKVFESML-ESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQP-GPEHYVSMINLLGRAGKIKEAEEFVL 493 (600)
Q Consensus 416 ~a~~~~~~m~-~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~ 493 (600)
...++|-++. ..+..+|......|.-.|--.|++++|..+|+.++. ++| |..+||.|+-.++...+.++|...|+
T Consensus 412 ~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~---v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~ 488 (579)
T KOG1125|consen 412 HIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQ---VKPNDYLLWNRLGATLANGNRSEEAISAYN 488 (579)
T ss_pred HHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHh---cCCchHHHHHHhhHHhcCCcccHHHHHHHH
Confidence 3444444443 344346666666777777788999999999998885 477 68889999999999999999999998
Q ss_pred hCC-CCCCH-HHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCC----------CCcHHHHhHHHHhhCCcHHHHH
Q 007519 494 RLP-FEPDH-RIWGALLGACGFCEGNAEIAEHAAKRLLELDPLN----------APAHVVLCNIYAASGRHVEEHK 557 (600)
Q Consensus 494 ~~~-~~p~~-~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~----------~~~~~~l~~~~~~~g~~~~A~~ 557 (600)
+.. +.|.. .+...+.-+|. ..|.+++|..+|-.++.+.+.+ ..++..|=.++.-.++.|-+.+
T Consensus 489 rALqLqP~yVR~RyNlgIS~m-NlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~ 563 (579)
T KOG1125|consen 489 RALQLQPGYVRVRYNLGISCM-NLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQE 563 (579)
T ss_pred HHHhcCCCeeeeehhhhhhhh-hhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHH
Confidence 865 77864 46777788888 9999999999999988866541 1245555555555666554433
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.60 E-value=6e-07 Score=73.73 Aligned_cols=106 Identities=13% Similarity=-0.018 Sum_probs=89.2
Q ss_pred HHHHHHHhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHhhhhCCHHHHHHHHHHHHhh
Q 007519 454 ELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLP-FEP-DHRIWGALLGACGFCEGNAEIAEHAAKRLLEL 531 (600)
Q Consensus 454 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~ 531 (600)
.++++..+ +.|+ .+..++..+...|++++|...|+... ..| +...+..+..++. ..|++++|+..|++++++
T Consensus 14 ~~~~~al~---~~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~-~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 14 DILKQLLS---VDPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWM-MLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHH---cCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH-HHhhHHHHHHHHHHHHhc
Confidence 45666653 3565 36678899999999999999999875 555 5667788888888 999999999999999999
Q ss_pred CCCCCCcHHHHhHHHHhhCCcHHHHHHHHHHhhc
Q 007519 532 DPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLK 565 (600)
Q Consensus 532 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 565 (600)
+|+++.++..++.++...|++++|...++...+.
T Consensus 88 ~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 88 DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKM 121 (144)
T ss_pred CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999977665543
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.57 E-value=6.8e-05 Score=83.14 Aligned_cols=317 Identities=11% Similarity=-0.042 Sum_probs=143.8
Q ss_pred HhcCCHhHHHHHHHhcc----cCCchhHHHHHHHHHhcCChhHHHHHHccCCC----CC---c-----chHHHHHHHHHh
Q 007519 146 VECCMMGEAIVLFEEME----ERNVVTWTSMISGYCRAGEVEEGYCLFRRMPR----KN---V-----VSWTAMIGGFAW 209 (600)
Q Consensus 146 ~~~~~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~---~-----~~~~~li~~~~~ 209 (600)
...|+++.+...++.+. ..+..........+...|++++|...+..... .+ . .....+...+..
T Consensus 385 ~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 464 (903)
T PRK04841 385 FNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAIN 464 (903)
T ss_pred HhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHh
Confidence 34455555555555442 11222223333444555666666655543321 00 0 011112233445
Q ss_pred cCChhHHHHHHHHHHhhhcCCCCC-ChhhHHHHHHHHHhcCChhhHHHHhcccC-------CCC--chhHHHHHHHHHhc
Q 007519 210 NGFHKESLLLFIEMKGICDNGNNC-NVQSCNSMINGYIRFGRLEEAQNLFDTVP-------VRD--EISWTSMIDGYLSV 279 (600)
Q Consensus 210 ~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-------~~~--~~~~~~l~~~~~~~ 279 (600)
.|+++.|...++........+..+ -....+.+...+...|++++|...+.+.. .+. ......+...+...
T Consensus 465 ~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~ 544 (903)
T PRK04841 465 DGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQ 544 (903)
T ss_pred CCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHC
Confidence 666777776666665421100000 01223344444556666666666665554 111 11233444555666
Q ss_pred CChHHHHHHHhhCCC-------CC----hhhHHHHHHHHHhCCChhHHHHHHHHHHHCC--CCCC--hhHHHHHHHHHhc
Q 007519 280 GQVSNAYYLFHNMPD-------RD----AVAWTAMISGLVQNELFVEATYLFMEMRAHG--VPPL--NATFSVLFGAAGA 344 (600)
Q Consensus 280 ~~~~~A~~~~~~~~~-------~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g--~~p~--~~~~~~l~~~~~~ 344 (600)
|++++|...+++... ++ ...+..+...+...|++++|...+.+..... ..+. ...+..+......
T Consensus 545 G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~ 624 (903)
T PRK04841 545 GFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLA 624 (903)
T ss_pred CCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHH
Confidence 666666666554322 01 1122333444555567777666666554321 1111 1122223334556
Q ss_pred ccchhhhHHHHHHHhhhcCCCc-hhHH-----HHHHHHHHhcCChHHHHHHHhcCCCCCh-------hhHHHHHHHHHhc
Q 007519 345 TANIDLGRQIHCVLMKTESESD-LILE-----NCLISMYAKCGVIDNAYNIFSNMVSRDL-------VSWNSMVMGFSHH 411 (600)
Q Consensus 345 ~~~~~~a~~~~~~~~~~~~~~~-~~~~-----~~l~~~~~~~~~~~~A~~~~~~~~~~~~-------~~~~~l~~~~~~~ 411 (600)
.|+.+.|...+........... ...+ ...+..+...|+.+.|...+.....+.. ..+..+..++...
T Consensus 625 ~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 704 (903)
T PRK04841 625 RGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILL 704 (903)
T ss_pred cCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHc
Confidence 6666666666655433211100 0000 0112333445666666666655442210 0123344555666
Q ss_pred CChHHHHHHHHHHHHc----CCCCCh-hHHHHHHHHhcccCchHHHHHHHHHHHhh
Q 007519 412 GLANETLKVFESMLES----GTHPNS-VTFLGILSACSHAGLVSRGWELFNAMFDV 462 (600)
Q Consensus 412 ~~~~~a~~~~~~m~~~----~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 462 (600)
|++++|...+++.... |..++. .+...+..++...|+.++|.+.+.++.+.
T Consensus 705 g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 705 GQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred CCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 6666666666665442 211111 23334445556666666666666666553
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.53 E-value=7.4e-06 Score=70.88 Aligned_cols=116 Identities=14% Similarity=0.035 Sum_probs=52.4
Q ss_pred HHHHhcccCchHHHHHHHHHHHhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHhhhhC
Q 007519 439 ILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLP-FEP-DHRIWGALLGACGFCEG 516 (600)
Q Consensus 439 l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~g 516 (600)
.+....+.|++..|...++++.. .-.+|...|+.++-+|.+.|++++|..-|.+.. +.| ++...+++...+. -.|
T Consensus 106 ~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~-L~g 182 (257)
T COG5010 106 QGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLL-LRG 182 (257)
T ss_pred HHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHH-HcC
Confidence 33444444455555444444443 112244444444445555555555444443332 222 2333444444444 445
Q ss_pred CHHHHHHHHHHHHhhCCCCCCcHHHHhHHHHhhCCcHHHHH
Q 007519 517 NAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHK 557 (600)
Q Consensus 517 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 557 (600)
|.+.|..++..+....+.+..+-..|..+....|++++|..
T Consensus 183 d~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~ 223 (257)
T COG5010 183 DLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAED 223 (257)
T ss_pred CHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHh
Confidence 55555555544444444444444444444445555555444
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.52 E-value=4.6e-06 Score=82.05 Aligned_cols=213 Identities=13% Similarity=-0.007 Sum_probs=164.0
Q ss_pred HHHHHHHhcccchhhhHHHHHHHhhhcCCCchhHHHHHHHHHHhcCChHHHHHHHhcCC--CCChhhHHHHHHHHHhcCC
Q 007519 336 SVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMV--SRDLVSWNSMVMGFSHHGL 413 (600)
Q Consensus 336 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~ 413 (600)
..+...+.+.|-...|..++++. ..+...+.+|...|+..+|..+..+.. +|+...|..+........-
T Consensus 402 ~~laell~slGitksAl~I~Erl---------emw~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv~~d~s~ 472 (777)
T KOG1128|consen 402 RLLAELLLSLGITKSALVIFERL---------EMWDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDVLHDPSL 472 (777)
T ss_pred HHHHHHHHHcchHHHHHHHHHhH---------HHHHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhhccChHH
Confidence 34445666777777777777743 334567788888888888888776554 6777888888888777777
Q ss_pred hHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHH
Q 007519 414 ANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQP-GPEHYVSMINLLGRAGKIKEAEEFV 492 (600)
Q Consensus 414 ~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~ 492 (600)
+++|.++.+..... .-..+.....+.++++++.+.|+.-.+ +.| ...+|..++-+..+.++++.|.+.|
T Consensus 473 yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~---~nplq~~~wf~~G~~ALqlek~q~av~aF 542 (777)
T KOG1128|consen 473 YEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLE---INPLQLGTWFGLGCAALQLEKEQAAVKAF 542 (777)
T ss_pred HHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhh---cCccchhHHHhccHHHHHHhhhHHHHHHH
Confidence 88888888765432 111122223347889999999988765 355 5778999999999999999999999
Q ss_pred HhCC-CCCCH-HHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCCcHHHHhHHHHhhCCcHHHHHHHHHHhhcCCc
Q 007519 493 LRLP-FEPDH-RIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVR 568 (600)
Q Consensus 493 ~~~~-~~p~~-~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 568 (600)
.... ..|+. ..|+++..++. +.|+..+|...++++++-+-++..++.+..-+..+.|.+++|.+.+..+.+....
T Consensus 543 ~rcvtL~Pd~~eaWnNls~ayi-~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~ 619 (777)
T KOG1128|consen 543 HRCVTLEPDNAEAWNNLSTAYI-RLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKK 619 (777)
T ss_pred HHHhhcCCCchhhhhhhhHHHH-HHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhh
Confidence 8865 67764 68999999999 9999999999999999988888899999988999999999999977777655443
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.50 E-value=7.3e-06 Score=84.64 Aligned_cols=131 Identities=13% Similarity=0.116 Sum_probs=70.0
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh-hHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCC-CcchHHH
Q 007519 397 DLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNS-VTFLGILSACSHAGLVSRGWELFNAMFDVYKIQP-GPEHYVS 474 (600)
Q Consensus 397 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~ 474 (600)
++..+-.|.....+.|++++|..+++...+ +.|+. .....+...+.+.+.+++|...++++... .| +......
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~---~p~~~~~~~~ 159 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG---GSSSAREILL 159 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc---CCCCHHHHHH
Confidence 345555555555556666666666665554 24443 33334445555556666666555555532 44 3445555
Q ss_pred HHHHHhhcCChHHHHHHHHhCC-CCCC-HHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCC
Q 007519 475 MINLLGRAGKIKEAEEFVLRLP-FEPD-HRIWGALLGACGFCEGNAEIAEHAAKRLLELDP 533 (600)
Q Consensus 475 l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p 533 (600)
++.++.+.|++++|..+|+++. ..|+ ..++..+...+. ..|+.++|...|+++++...
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~-~~G~~~~A~~~~~~a~~~~~ 219 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLT-RRGALWRARDVLQAGLDAIG 219 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhhC
Confidence 5555566666666666665543 2332 344555555555 55666666666666655443
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.48 E-value=4.1e-05 Score=71.71 Aligned_cols=224 Identities=11% Similarity=0.082 Sum_probs=136.6
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhcccchhhhHHHHHHHhhhcCCCchhHHHHHHHHHH
Q 007519 299 AWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYA 378 (600)
Q Consensus 299 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 378 (600)
++..+-..+...+..++|+.+..++++. .|+..|. ++....++.
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~l--nP~~yta----------------------------------W~~R~~iL~ 82 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRL--NPGNYTV----------------------------------WHFRRLCLE 82 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHH--CchhHHH----------------------------------HHHHHHHHH
Confidence 3444444556667777777777777764 4444321 111122222
Q ss_pred hcC-ChHHHHHHHhcCC---CCChhhHHHHHHHHHhcCCh--HHHHHHHHHHHHcCCCCChhHHHHHHHHhcccCchHHH
Q 007519 379 KCG-VIDNAYNIFSNMV---SRDLVSWNSMVMGFSHHGLA--NETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRG 452 (600)
Q Consensus 379 ~~~-~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~--~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a 452 (600)
..| ++++++..++++. +.+..+|+.-...+.+.|+. ++++.+++++.+.. +-|...|..-..++...|+++++
T Consensus 83 ~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~ee 161 (320)
T PLN02789 83 ALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDE 161 (320)
T ss_pred HcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHH
Confidence 233 3566666666554 34445566555555555542 56677777777642 33456666666667777778888
Q ss_pred HHHHHHHHhhcCCCC-CcchHHHHHHHHhhc---CCh----HHHHHHHHh-CCCCC-CHHHHHHHHHHHhhhh----CCH
Q 007519 453 WELFNAMFDVYKIQP-GPEHYVSMINLLGRA---GKI----KEAEEFVLR-LPFEP-DHRIWGALLGACGFCE----GNA 518 (600)
Q Consensus 453 ~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~---g~~----~~A~~~~~~-~~~~p-~~~~~~~l~~~~~~~~----g~~ 518 (600)
++.+.++++. .| +...|+....++.+. |.. +++.++..+ +...| +...|+.+.+.+. .. +..
T Consensus 162 L~~~~~~I~~---d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~-~~~~~l~~~ 237 (320)
T PLN02789 162 LEYCHQLLEE---DVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFK-DDKEALVSD 237 (320)
T ss_pred HHHHHHHHHH---CCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHh-cCCcccccc
Confidence 8888887754 44 466676666665544 222 355666644 34555 4567777777766 52 345
Q ss_pred HHHHHHHHHHHhhCCCCCCcHHHHhHHHHhhC------------------CcHHHHHHHHHHh
Q 007519 519 EIAEHAAKRLLELDPLNAPAHVVLCNIYAASG------------------RHVEEHKLRMDMG 563 (600)
Q Consensus 519 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g------------------~~~~A~~~~~~~~ 563 (600)
.+|...+.+++..+|.++.++..|+.+|.... ..++|.++++.+.
T Consensus 238 ~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~ 300 (320)
T PLN02789 238 PEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELE 300 (320)
T ss_pred hhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHHH
Confidence 66888888888888888888888888887632 2366777777774
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.47 E-value=1.1e-05 Score=84.83 Aligned_cols=199 Identities=17% Similarity=0.114 Sum_probs=138.2
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHhcCCC--------CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHH
Q 007519 366 DLILENCLISMYAKCGVIDNAYNIFSNMVS--------RDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFL 437 (600)
Q Consensus 366 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~ 437 (600)
+...|-..|......++.++|+++.++..+ .-...|.++++.....|.-+...++|+++.+. --....|.
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V~~ 1534 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTVHL 1534 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHHHH
Confidence 455666677777777788888777777651 12356777777777777777778888877763 22234566
Q ss_pred HHHHHhcccCchHHHHHHHHHHHhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhCC-CCCC--H-HHHHHHHHHHhh
Q 007519 438 GILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLP-FEPD--H-RIWGALLGACGF 513 (600)
Q Consensus 438 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~--~-~~~~~l~~~~~~ 513 (600)
.|...|.+.+.+++|.++++.|.++++ ....+|..++..+.+..+-+.|.+++.++. .-|. . ......+..-.
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEF- 1611 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEF- 1611 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHh-
Confidence 777778888888888888888887655 456678888888888888788888877653 3333 1 22222222233
Q ss_pred hhCCHHHHHHHHHHHHhhCCCCCCcHHHHhHHHHhhCCcHHHHHHHHHHhhcCCcc
Q 007519 514 CEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRK 569 (600)
Q Consensus 514 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 569 (600)
+.||.+.+..+|+-.+.-.|.....|..+++.-.++|+.+.++.+++.+...++++
T Consensus 1612 k~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1612 KYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred hcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence 77888888888888888888777888888888888888888888777776666543
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=1.4e-05 Score=69.60 Aligned_cols=154 Identities=10% Similarity=0.117 Sum_probs=110.5
Q ss_pred HHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccCchHHHH
Q 007519 374 ISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGW 453 (600)
Q Consensus 374 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~ 453 (600)
+-.|...|+++.+....+.+..+. ..+...++.+++...+++..... +.+...|..+...|...|+++.|.
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~ 93 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNAL 93 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 345677777777655443332221 01223566778888888877653 556677888888999999999999
Q ss_pred HHHHHHHhhcCCCC-CcchHHHHHHHH-hhcCC--hHHHHHHHHhCC-CCCC-HHHHHHHHHHHhhhhCCHHHHHHHHHH
Q 007519 454 ELFNAMFDVYKIQP-GPEHYVSMINLL-GRAGK--IKEAEEFVLRLP-FEPD-HRIWGALLGACGFCEGNAEIAEHAAKR 527 (600)
Q Consensus 454 ~~~~~~~~~~~~~p-~~~~~~~l~~~~-~~~g~--~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~~g~~~~a~~~~~~ 527 (600)
..|+++.+. .| +...+..++.++ ...|+ .++|.+++++.. ..|+ ...+..+...+. ..|++++|+..+++
T Consensus 94 ~a~~~Al~l---~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~-~~g~~~~Ai~~~~~ 169 (198)
T PRK10370 94 LAYRQALQL---RGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAF-MQADYAQAIELWQK 169 (198)
T ss_pred HHHHHHHHh---CCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHH-HcCCHHHHHHHHHH
Confidence 999988854 56 577888888864 67777 599999998875 5664 456666666677 99999999999999
Q ss_pred HHhhCCCCCCcHH
Q 007519 528 LLELDPLNAPAHV 540 (600)
Q Consensus 528 ~~~~~p~~~~~~~ 540 (600)
++++.|.+..-+.
T Consensus 170 aL~l~~~~~~r~~ 182 (198)
T PRK10370 170 VLDLNSPRVNRTQ 182 (198)
T ss_pred HHhhCCCCccHHH
Confidence 9998886654443
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.45 E-value=6.6e-05 Score=74.26 Aligned_cols=216 Identities=11% Similarity=0.090 Sum_probs=171.4
Q ss_pred CCCchhHHHHHHHHHhcCChHHHHHHHhhCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHH
Q 007519 263 VRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAA 342 (600)
Q Consensus 263 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~ 342 (600)
+|-...-..+...+.+.|-...|..+|+++. .|..+|.+|+..|+..+|..+..+..+. +||..-|..+....
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erle-----mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~ 467 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERLE-----MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVL 467 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhHH-----HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhc
Confidence 3344455678888999999999999998754 6888899999999999999998888773 78888888888888
Q ss_pred hcccchhhhHHHHHHHhhhcCCCchhHHHHHHHHHHhcCChHHHHHHHhcCC---CCChhhHHHHHHHHHhcCChHHHHH
Q 007519 343 GATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMV---SRDLVSWNSMVMGFSHHGLANETLK 419 (600)
Q Consensus 343 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~ 419 (600)
....-+++|.++.+..... .-..+.....+.++++++.+.|+.-. +-...+|-....+..+.++++.|.+
T Consensus 468 ~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~ 540 (777)
T KOG1128|consen 468 HDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVK 540 (777)
T ss_pred cChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHH
Confidence 7777788888887743322 11122223345789999999998755 4456788888888899999999999
Q ss_pred HHHHHHHcCCCCC-hhHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhCC
Q 007519 420 VFESMLESGTHPN-SVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLP 496 (600)
Q Consensus 420 ~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 496 (600)
.|..-.. ..|+ ...|+.+-.+|.+.|+-.+|...++++.+- . .-+..+|...+-...+.|.+++|.+.+.++.
T Consensus 541 aF~rcvt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKc-n-~~~w~iWENymlvsvdvge~eda~~A~~rll 614 (777)
T KOG1128|consen 541 AFHRCVT--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKC-N-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLL 614 (777)
T ss_pred HHHHHhh--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhc-C-CCCCeeeechhhhhhhcccHHHHHHHHHHHH
Confidence 9998886 3565 478999999999999999999999999874 3 3355678888888899999999999998864
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.44 E-value=5.8e-06 Score=66.55 Aligned_cols=96 Identities=14% Similarity=0.015 Sum_probs=82.0
Q ss_pred CcchHHHHHHHHhhcCChHHHHHHHHhCC-CCCC-HHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCCcHHHHhHH
Q 007519 468 GPEHYVSMINLLGRAGKIKEAEEFVLRLP-FEPD-HRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNI 545 (600)
Q Consensus 468 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 545 (600)
+......++..+...|++++|.++|+-+. ..|. ..-|..+..++. ..|++++|+..|.++..++|++|.++.+++.+
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q-~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c 112 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQ-AQKHWGEAIYAYGRAAQIKIDAPQAPWAAAEC 112 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH-HHhhHHHHHHHHHHHHhcCCCCchHHHHHHHH
Confidence 35566677888899999999999999875 5665 455667777777 99999999999999999999999999999999
Q ss_pred HHhhCCcHHHHHHHHHHhh
Q 007519 546 YAASGRHVEEHKLRMDMGL 564 (600)
Q Consensus 546 ~~~~g~~~~A~~~~~~~~~ 564 (600)
+...|+.+.|.+-++....
T Consensus 113 ~L~lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 113 YLACDNVCYAIKALKAVVR 131 (157)
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 9999999999996665443
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.43 E-value=3e-05 Score=72.64 Aligned_cols=191 Identities=12% Similarity=0.131 Sum_probs=139.9
Q ss_pred HHHHHHHhcCChHHHHHHHhcCC---CCChhhHHHHHHHHHhcC-ChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccC
Q 007519 372 CLISMYAKCGVIDNAYNIFSNMV---SRDLVSWNSMVMGFSHHG-LANETLKVFESMLESGTHPNSVTFLGILSACSHAG 447 (600)
Q Consensus 372 ~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g 447 (600)
.+-..+...++.++|+....++. +.+..+|+.-..++...| ++++++..++++.+.. +-+..+|..-...+.+.|
T Consensus 42 ~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~ 120 (320)
T PLN02789 42 YFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLG 120 (320)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcC
Confidence 34444556778889999988877 445567777666777777 6799999999998753 334455655444444555
Q ss_pred c--hHHHHHHHHHHHhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHhhhh---CC--
Q 007519 448 L--VSRGWELFNAMFDVYKIQP-GPEHYVSMINLLGRAGKIKEAEEFVLRLP-FEP-DHRIWGALLGACGFCE---GN-- 517 (600)
Q Consensus 448 ~--~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~---g~-- 517 (600)
. .+++..+++++.+. .| +..+|+....++...|++++|++.++++. ..| +...|+.....+. +. |+
T Consensus 121 ~~~~~~el~~~~kal~~---dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~-~~~~l~~~~ 196 (320)
T PLN02789 121 PDAANKELEFTRKILSL---DAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVIT-RSPLLGGLE 196 (320)
T ss_pred chhhHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHH-hcccccccc
Confidence 5 36778888888753 66 68899999999999999999999999975 344 5677877766654 43 22
Q ss_pred --HHHHHHHHHHHHhhCCCCCCcHHHHhHHHHhh----CCcHHHHHHHHHHhhcCC
Q 007519 518 --AEIAEHAAKRLLELDPLNAPAHVVLCNIYAAS----GRHVEEHKLRMDMGLKGV 567 (600)
Q Consensus 518 --~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~~ 567 (600)
.+..+.+.++++..+|+|..++..+..++... ++..+|.++.......++
T Consensus 197 ~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~ 252 (320)
T PLN02789 197 AMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDS 252 (320)
T ss_pred ccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccC
Confidence 25688888999999999999999999999883 455678776666554433
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.43 E-value=2e-05 Score=68.26 Aligned_cols=150 Identities=16% Similarity=0.168 Sum_probs=102.5
Q ss_pred HHHHHHhcCChHHHHHHHhcCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccCch
Q 007519 373 LISMYAKCGVIDNAYNIFSNMV---SRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLV 449 (600)
Q Consensus 373 l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~ 449 (600)
+-..+.-.|+-+....+..... +.|.......+....+.|++..|+..|++.... -++|...|+.+.-+|.+.|++
T Consensus 72 ~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l-~p~d~~~~~~lgaaldq~Gr~ 150 (257)
T COG5010 72 LATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL-APTDWEAWNLLGAALDQLGRF 150 (257)
T ss_pred HHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc-CCCChhhhhHHHHHHHHccCh
Confidence 3444455566555555555533 344555566777777788888888888877764 366667777777788888888
Q ss_pred HHHHHHHHHHHhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhCCC-CC-CHHHHHHHHHHHhhhhCCHHHHHHHHH
Q 007519 450 SRGWELFNAMFDVYKIQP-GPEHYVSMINLLGRAGKIKEAEEFVLRLPF-EP-DHRIWGALLGACGFCEGNAEIAEHAAK 526 (600)
Q Consensus 450 ~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~p-~~~~~~~l~~~~~~~~g~~~~a~~~~~ 526 (600)
+.|..-|.+..+. .| ++..++.|+..|.-.|+.+.|..++..... .+ |..+-..+..... ..|+++.|..+..
T Consensus 151 ~~Ar~ay~qAl~L---~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~-~~g~~~~A~~i~~ 226 (257)
T COG5010 151 DEARRAYRQALEL---APNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVG-LQGDFREAEDIAV 226 (257)
T ss_pred hHHHHHHHHHHHh---ccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHh-hcCChHHHHhhcc
Confidence 8888877777753 45 466777788788888888888888777652 22 5556666766666 7788877776665
Q ss_pred H
Q 007519 527 R 527 (600)
Q Consensus 527 ~ 527 (600)
+
T Consensus 227 ~ 227 (257)
T COG5010 227 Q 227 (257)
T ss_pred c
Confidence 4
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.40 E-value=4.3e-07 Score=52.69 Aligned_cols=33 Identities=39% Similarity=0.731 Sum_probs=27.7
Q ss_pred CCCCChhhHHHHHHHHHhcCChhhHHHHhcccC
Q 007519 230 GNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVP 262 (600)
Q Consensus 230 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 262 (600)
|+.||..||+.+|++|++.|++++|.++|++|.
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 778888888888888888888888888888763
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.39 E-value=4.6e-05 Score=65.47 Aligned_cols=169 Identities=18% Similarity=0.176 Sum_probs=117.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHhcCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhccc
Q 007519 370 ENCLISMYAKCGVIDNAYNIFSNMV---SRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHA 446 (600)
Q Consensus 370 ~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 446 (600)
|..++-+....|+.+-|...++.+. +.+..+-..-...+-..|++++|+++++.+.+.. +.|..++..=+...-..
T Consensus 55 ~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~ 133 (289)
T KOG3060|consen 55 YEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQ 133 (289)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHc
Confidence 3444455566677777777776654 2222222222334556788999999999988865 55566676666666667
Q ss_pred CchHHHHHHHHHHHhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhCC-CCCCHHHH-HHHHHHHhhhhC---CHHHH
Q 007519 447 GLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLP-FEPDHRIW-GALLGACGFCEG---NAEIA 521 (600)
Q Consensus 447 g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~-~~l~~~~~~~~g---~~~~a 521 (600)
|+.-+|++-+....+. +..|...|.-+.+.|...|++++|.-.++++. ..|-.+.+ ..+...+. ..| +.+.+
T Consensus 134 GK~l~aIk~ln~YL~~--F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Y-t~gg~eN~~~a 210 (289)
T KOG3060|consen 134 GKNLEAIKELNEYLDK--FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLY-TQGGAENLELA 210 (289)
T ss_pred CCcHHHHHHHHHHHHH--hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH-HHhhHHHHHHH
Confidence 7777888888888874 55688899999999999999999999999975 66755544 44444444 444 56778
Q ss_pred HHHHHHHHhhCCCCCCcHHHH
Q 007519 522 EHAAKRLLELDPLNAPAHVVL 542 (600)
Q Consensus 522 ~~~~~~~~~~~p~~~~~~~~l 542 (600)
.++|.+++++.|.+...+..+
T Consensus 211 rkyy~~alkl~~~~~ral~GI 231 (289)
T KOG3060|consen 211 RKYYERALKLNPKNLRALFGI 231 (289)
T ss_pred HHHHHHHHHhChHhHHHHHHH
Confidence 899999999999665554443
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.36 E-value=6.4e-05 Score=78.62 Aligned_cols=147 Identities=10% Similarity=0.080 Sum_probs=94.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhcCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcc
Q 007519 369 LENCLISMYAKCGVIDNAYNIFSNMV---SRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSH 445 (600)
Q Consensus 369 ~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 445 (600)
.+..+..+|-+.|+.++|..+|+++. +.|+.+.|.+...|+.. +.++|++++.+.... +..
T Consensus 118 Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~---------------~i~ 181 (906)
T PRK14720 118 ALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR---------------FIK 181 (906)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH---------------HHh
Confidence 44566777777777777777777765 45666777777777777 777777777766543 444
Q ss_pred cCchHHHHHHHHHHHhhcCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHhhhhCCHHHHHHH
Q 007519 446 AGLVSRGWELFNAMFDVYKIQPG-PEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHA 524 (600)
Q Consensus 446 ~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~g~~~~a~~~ 524 (600)
.+++..+.++|.++... .|+ ...+..+.+....+-.+. --..++.-+...|. ..+++++++.+
T Consensus 182 ~kq~~~~~e~W~k~~~~---~~~d~d~f~~i~~ki~~~~~~~------------~~~~~~~~l~~~y~-~~~~~~~~i~i 245 (906)
T PRK14720 182 KKQYVGIEEIWSKLVHY---NSDDFDFFLRIERKVLGHREFT------------RLVGLLEDLYEPYK-ALEDWDEVIYI 245 (906)
T ss_pred hhcchHHHHHHHHHHhc---CcccchHHHHHHHHHHhhhccc------------hhHHHHHHHHHHHh-hhhhhhHHHHH
Confidence 55677777777777642 443 323332322222221111 11223344445555 77889999999
Q ss_pred HHHHHhhCCCCCCcHHHHhHHHH
Q 007519 525 AKRLLELDPLNAPAHVVLCNIYA 547 (600)
Q Consensus 525 ~~~~~~~~p~~~~~~~~l~~~~~ 547 (600)
++.+++.+|.|..+...++..|.
T Consensus 246 LK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 246 LKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HHHHHhcCCcchhhHHHHHHHHH
Confidence 99999999988888888888776
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.35 E-value=6.7e-05 Score=70.91 Aligned_cols=110 Identities=25% Similarity=0.225 Sum_probs=60.8
Q ss_pred cccCchHHHHHHHHHHHhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhCC-CCCC-HHHHHHHHHHHhhhhCCHHH
Q 007519 444 SHAGLVSRGWELFNAMFDVYKIQP-GPEHYVSMINLLGRAGKIKEAEEFVLRLP-FEPD-HRIWGALLGACGFCEGNAEI 520 (600)
Q Consensus 444 ~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~~g~~~~ 520 (600)
...|.+++|+..++.+... .| |+..+...+..+.+.++.++|.+.++++. ..|+ ...+..+..++. +.|+..+
T Consensus 317 ~~~~~~d~A~~~l~~L~~~---~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all-~~g~~~e 392 (484)
T COG4783 317 YLAGQYDEALKLLQPLIAA---QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALL-KGGKPQE 392 (484)
T ss_pred HHhcccchHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHH-hcCChHH
Confidence 3445556666666555542 34 34444455555666666666666665543 4444 233444444555 5566666
Q ss_pred HHHHHHHHHhhCCCCCCcHHHHhHHHHhhCCcHHHHH
Q 007519 521 AEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHK 557 (600)
Q Consensus 521 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 557 (600)
|+..++.....+|+++..|..|+.+|...|+..++..
T Consensus 393 ai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~ 429 (484)
T COG4783 393 AIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALL 429 (484)
T ss_pred HHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHH
Confidence 6666666666666666666666666666555555555
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.35 E-value=6.6e-07 Score=51.91 Aligned_cols=32 Identities=25% Similarity=0.396 Sum_probs=18.9
Q ss_pred CCCCCcchHHHHHHHHhhcCChHHHHHHHHhC
Q 007519 464 KIQPGPEHYVSMINLLGRAGKIKEAEEFVLRL 495 (600)
Q Consensus 464 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 495 (600)
|+.||..+|++|+.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 45555556666666666666666666665555
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.34 E-value=4.5e-05 Score=69.32 Aligned_cols=182 Identities=14% Similarity=0.015 Sum_probs=122.3
Q ss_pred CChhHHHHHHHHHhcccchhhhHHHHHHHhhhcCCC--chhHHHHHHHHHHhcCChHHHHHHHhcCC--CC-Chh---hH
Q 007519 330 PLNATFSVLFGAAGATANIDLGRQIHCVLMKTESES--DLILENCLISMYAKCGVIDNAYNIFSNMV--SR-DLV---SW 401 (600)
Q Consensus 330 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~-~~~---~~ 401 (600)
.....+..+...+...|+++.|...++.+.+..... ....+..+..++...|++++|...++++. .| +.. .+
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 345567777778899999999999999887765432 12456778899999999999999999986 22 222 45
Q ss_pred HHHHHHHHhc--------CChHHHHHHHHHHHHcCCCCChh-HHHHHHHHhcccCchHHHHHHHHHHHhhcCCCCCcchH
Q 007519 402 NSMVMGFSHH--------GLANETLKVFESMLESGTHPNSV-TFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHY 472 (600)
Q Consensus 402 ~~l~~~~~~~--------~~~~~a~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~ 472 (600)
..+..++... |+.++|.+.|+.+... .|+.. ....+.... .. ..... ...
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~----~~------~~~~~---------~~~ 169 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMD----YL------RNRLA---------GKE 169 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHH----HH------HHHHH---------HHH
Confidence 5555666554 7889999999999875 45542 222111110 00 00000 012
Q ss_pred HHHHHHHhhcCChHHHHHHHHhCC-C---CC-CHHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCC
Q 007519 473 VSMINLLGRAGKIKEAEEFVLRLP-F---EP-DHRIWGALLGACGFCEGNAEIAEHAAKRLLELDP 533 (600)
Q Consensus 473 ~~l~~~~~~~g~~~~A~~~~~~~~-~---~p-~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p 533 (600)
..++..|.+.|++++|...+++.. . .| ....+..+..++. ..|+.++|...++.+....|
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~-~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYL-KLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhCC
Confidence 356677888888888888887753 2 23 2456777777777 88888888888887766555
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.30 E-value=0.00037 Score=60.56 Aligned_cols=156 Identities=17% Similarity=0.126 Sum_probs=95.2
Q ss_pred HHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhc----ccCc
Q 007519 373 LISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACS----HAGL 448 (600)
Q Consensus 373 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~----~~g~ 448 (600)
-...|...|++++|++..... .+......=...+.+..+.+-|.+.+++|.+- -+..|.+.|..++. ..+.
T Consensus 114 aa~i~~~~~~~deAl~~~~~~--~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~ggek 188 (299)
T KOG3081|consen 114 AAIIYMHDGDFDEALKALHLG--ENLEAAALNVQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATGGEK 188 (299)
T ss_pred hhHHhhcCCChHHHHHHHhcc--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhccchh
Confidence 334566777777777777662 23333333344556666777777777777652 24455555555543 3456
Q ss_pred hHHHHHHHHHHHhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHhhhhC-CHHHHHHHH
Q 007519 449 VSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLP--FEPDHRIWGALLGACGFCEG-NAEIAEHAA 525 (600)
Q Consensus 449 ~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~g-~~~~a~~~~ 525 (600)
+..|.-+|+++.+ +..|++.+.+..+.++...|++++|..++++.. ..-++.++.+++.... ..| +.+-..+..
T Consensus 189 ~qdAfyifeE~s~--k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~-~~Gkd~~~~~r~l 265 (299)
T KOG3081|consen 189 IQDAFYIFEELSE--KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLAL-HLGKDAEVTERNL 265 (299)
T ss_pred hhhHHHHHHHHhc--ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHH-HhCCChHHHHHHH
Confidence 7777777777765 356777777777777777777777777777754 2234555555555444 444 344455667
Q ss_pred HHHHhhCCCCC
Q 007519 526 KRLLELDPLNA 536 (600)
Q Consensus 526 ~~~~~~~p~~~ 536 (600)
.++....|.++
T Consensus 266 ~QLk~~~p~h~ 276 (299)
T KOG3081|consen 266 SQLKLSHPEHP 276 (299)
T ss_pred HHHHhcCCcch
Confidence 77777777433
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.29 E-value=7.9e-06 Score=66.85 Aligned_cols=91 Identities=15% Similarity=0.138 Sum_probs=42.0
Q ss_pred HHHHhcccCchHHHHHHHHHHHhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhCC-CCCC-HHHHHHHHHHHhhhh
Q 007519 439 ILSACSHAGLVSRGWELFNAMFDVYKIQP-GPEHYVSMINLLGRAGKIKEAEEFVLRLP-FEPD-HRIWGALLGACGFCE 515 (600)
Q Consensus 439 l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~~ 515 (600)
+...+...|++++|.+.++.+... .| +...+..++..+...|++++|...+++.. ..|+ ...+..+...+. ..
T Consensus 23 ~a~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~-~~ 98 (135)
T TIGR02552 23 LAYNLYQQGRYDEALKLFQLLAAY---DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLL-AL 98 (135)
T ss_pred HHHHHHHcccHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH-Hc
Confidence 334444555555555555554432 22 34444455555555555555555554432 2222 233333333333 45
Q ss_pred CCHHHHHHHHHHHHhhCC
Q 007519 516 GNAEIAEHAAKRLLELDP 533 (600)
Q Consensus 516 g~~~~a~~~~~~~~~~~p 533 (600)
|+.++|+..+++++++.|
T Consensus 99 g~~~~A~~~~~~al~~~p 116 (135)
T TIGR02552 99 GEPESALKALDLAIEICG 116 (135)
T ss_pred CCHHHHHHHHHHHHHhcc
Confidence 555555555555555555
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.25 E-value=0.00035 Score=60.70 Aligned_cols=115 Identities=14% Similarity=0.126 Sum_probs=54.1
Q ss_pred HHHHhcCChhhHHHHhcccCCCCchhHHHHHHHHHhcCChHHHHHHHhhCCC-CChhhHHHHHHHHHh----CCChhHHH
Q 007519 243 NGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPD-RDAVAWTAMISGLVQ----NELFVEAT 317 (600)
Q Consensus 243 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~a~ 317 (600)
..|+..+++++|++..+.. .+......=+..+.+..+++-|.+.++.|.+ .+..+.+.|..++.+ .+...+|.
T Consensus 116 ~i~~~~~~~deAl~~~~~~--~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~tLtQLA~awv~la~ggek~qdAf 193 (299)
T KOG3081|consen 116 IIYMHDGDFDEALKALHLG--ENLEAAALNVQILLKMHRFDLAEKELKKMQQIDEDATLTQLAQAWVKLATGGEKIQDAF 193 (299)
T ss_pred HHhhcCCChHHHHHHHhcc--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhccchhhhhHH
Confidence 3455666666666665552 2222223333444555555555555555554 222333334333322 33455555
Q ss_pred HHHHHHHHCCCCCChhHHHHHHHHHhcccchhhhHHHHHHHhh
Q 007519 318 YLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMK 360 (600)
Q Consensus 318 ~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 360 (600)
-+|++|-+. ..|+..+.+-...++...+++++|..+++.+..
T Consensus 194 yifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~ 235 (299)
T KOG3081|consen 194 YIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALD 235 (299)
T ss_pred HHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHh
Confidence 555555443 344444444444444444444444444444433
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.23 E-value=0.00013 Score=62.85 Aligned_cols=159 Identities=17% Similarity=0.181 Sum_probs=125.4
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHH-HHHhcccCchHHHHHHHHHHHhhcCCCC-CcchHHHHHH
Q 007519 400 SWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGI-LSACSHAGLVSRGWELFNAMFDVYKIQP-GPEHYVSMIN 477 (600)
Q Consensus 400 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l-~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~ 477 (600)
.|..++-+....|+.+-|..+++.+... + |.+.-...+ ...+...|.+++|.++++.+.+. +| |..++---+-
T Consensus 54 l~EqV~IAAld~~~~~lAq~C~~~L~~~-f-p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~d---dpt~~v~~KRKlA 128 (289)
T KOG3060|consen 54 LYEQVFIAALDTGRDDLAQKCINQLRDR-F-PGSKRVGKLKAMLLEATGNYKEAIEYYESLLED---DPTDTVIRKRKLA 128 (289)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHh-C-CCChhHHHHHHHHHHHhhchhhHHHHHHHHhcc---CcchhHHHHHHHH
Confidence 4566677778899999999999999886 4 554333222 23455679999999999999975 46 6777777777
Q ss_pred HHhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCCcHHHHhHHHHhhCC---c
Q 007519 478 LLGRAGKIKEAEEFVLRLP--FEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGR---H 552 (600)
Q Consensus 478 ~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~---~ 552 (600)
+.-..|+.-+|++-+.+.. +..|...|..+...|. ..|++++|...+++++=..|-++..+..++.++.-.|- .
T Consensus 129 ilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~-~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~ 207 (289)
T KOG3060|consen 129 ILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYL-SEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENL 207 (289)
T ss_pred HHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHH-hHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHH
Confidence 7778888889988887764 6678999999999999 99999999999999999999999999999999887764 4
Q ss_pred HHHHHHHHHHhh
Q 007519 553 VEEHKLRMDMGL 564 (600)
Q Consensus 553 ~~A~~~~~~~~~ 564 (600)
+-|.+++....+
T Consensus 208 ~~arkyy~~alk 219 (289)
T KOG3060|consen 208 ELARKYYERALK 219 (289)
T ss_pred HHHHHHHHHHHH
Confidence 445555544433
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.18 E-value=5.1e-05 Score=72.49 Aligned_cols=125 Identities=12% Similarity=0.097 Sum_probs=104.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccCc
Q 007519 369 LENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGL 448 (600)
Q Consensus 369 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~ 448 (600)
....|+..+...++++.|..+|+++...++.....++..+...++-.+|++++++.... .+-+...+..-...|...++
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~-~p~d~~LL~~Qa~fLl~k~~ 249 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKE-NPQDSELLNLQAEFLLSKKK 249 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCC
Confidence 34566777778899999999999999777777778889998899999999999999864 23344555555677889999
Q ss_pred hHHHHHHHHHHHhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhCCC
Q 007519 449 VSRGWELFNAMFDVYKIQP-GPEHYVSMINLLGRAGKIKEAEEFVLRLPF 497 (600)
Q Consensus 449 ~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 497 (600)
.+.|..+.+++.+ ..| +..+|..|+.+|...|+++.|+-.++.+|.
T Consensus 250 ~~lAL~iAk~av~---lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 250 YELALEIAKKAVE---LSPSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred HHHHHHHHHHHHH---hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 9999999999985 478 577999999999999999999999999873
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.17 E-value=0.00015 Score=75.22 Aligned_cols=143 Identities=12% Similarity=0.080 Sum_probs=107.4
Q ss_pred cCCCchhHHHHHHHHHHhcCChHHHHHHHhcCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChh-HHH
Q 007519 362 ESESDLILENCLISMYAKCGVIDNAYNIFSNMV---SRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSV-TFL 437 (600)
Q Consensus 362 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~ 437 (600)
.+..++..+..|.......|++++|+.+++.+. +.+...+..++..+.+.+++++|+..+++.... .|+.. ...
T Consensus 81 ~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~~~ 158 (694)
T PRK15179 81 RYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSAREIL 158 (694)
T ss_pred hccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHHHH
Confidence 344567777788888888899999988888876 445667777888888889999999888888874 55554 445
Q ss_pred HHHHHhcccCchHHHHHHHHHHHhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhCC--CCCCHHHHHHHHH
Q 007519 438 GILSACSHAGLVSRGWELFNAMFDVYKIQP-GPEHYVSMINLLGRAGKIKEAEEFVLRLP--FEPDHRIWGALLG 509 (600)
Q Consensus 438 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~ 509 (600)
.+..++.+.|++++|..+|+++... .| +..++..++.++...|+.++|...|++.. ..|....|+..+.
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~~---~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 230 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSRQ---HPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRLV 230 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhc---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHHH
Confidence 5557778888999999999888852 44 36788888888888899999988888864 4455555554443
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.0061 Score=57.43 Aligned_cols=410 Identities=10% Similarity=0.056 Sum_probs=212.5
Q ss_pred HHhcCCHhHHHHHHHhccc---CCc------hhHHHHHHHHHhcCChhHHHHHHccCCC-CCcchHHHHHHHH--HhcCC
Q 007519 145 YVECCMMGEAIVLFEEMEE---RNV------VTWTSMISGYCRAGEVEEGYCLFRRMPR-KNVVSWTAMIGGF--AWNGF 212 (600)
Q Consensus 145 ~~~~~~~~~A~~~~~~~~~---~~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~--~~~~~ 212 (600)
+-+.++..+|.++|.++-+ .++ ..-+.++++|.. ++++.....+....+ .....|..+..++ .+.+.
T Consensus 16 Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~~~~s~~l~LF~~L~~Y~~k~ 94 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQFGKSAYLPLFKALVAYKQKE 94 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhh
Confidence 3467889999999988763 222 223456666655 455655555555543 2245666666654 46788
Q ss_pred hhHHHHHHHHHHhhhcCCCCC-----------ChhhHHHHHHHHHhcCChhhHHHHhcccC--------CCCchhHHHHH
Q 007519 213 HKESLLLFIEMKGICDNGNNC-----------NVQSCNSMINGYIRFGRLEEAQNLFDTVP--------VRDEISWTSMI 273 (600)
Q Consensus 213 ~~~a~~~~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--------~~~~~~~~~l~ 273 (600)
+.+|++.+....+..+....| |-..=+..+.++...|++.++..+++++. ..+..+|+.++
T Consensus 95 ~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~v 174 (549)
T PF07079_consen 95 YRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAV 174 (549)
T ss_pred HHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHH
Confidence 999999888877641111111 11112345667778899999988888776 24666777755
Q ss_pred HHHHhcCChH---------------HHHHHHhhCCCCCh----------hhHHHHHHHHHhC--CChhHHHHHHHHHHHC
Q 007519 274 DGYLSVGQVS---------------NAYYLFHNMPDRDA----------VAWTAMISGLVQN--ELFVEATYLFMEMRAH 326 (600)
Q Consensus 274 ~~~~~~~~~~---------------~A~~~~~~~~~~~~----------~~~~~li~~~~~~--g~~~~a~~~~~~m~~~ 326 (600)
-++++.=-.+ -+.-...++...+. .....++....-. .+..--+++++.....
T Consensus 175 lmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~~ 254 (549)
T PF07079_consen 175 LMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWENF 254 (549)
T ss_pred HHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHhh
Confidence 5544321111 11111111111111 1111111111111 1112223333333333
Q ss_pred CCCCChh-HHHHHHHHHhcccchhhhHHHHHHHhhhcCCC----chhHHHHHHHHHHhcCChHHHHHHHhcCC--CCChh
Q 007519 327 GVPPLNA-TFSVLFGAAGATANIDLGRQIHCVLMKTESES----DLILENCLISMYAKCGVIDNAYNIFSNMV--SRDLV 399 (600)
Q Consensus 327 g~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~ 399 (600)
-+.|+.. ....+...+.+ +.+.+..+-+.+....+.+ -...+..++....+.++...|.+.+.-+. .|+..
T Consensus 255 yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ldp~~s 332 (549)
T PF07079_consen 255 YVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKILDPRIS 332 (549)
T ss_pred ccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCcch
Confidence 3445433 22233333333 3444444333332222111 23345556666666777777766666554 33332
Q ss_pred hHHH-------HHHHHHh----cCChHHHHHHHHHHHHcCCCCChhHHHHHH---HHhcccCc-hHHHHHHHHHHHhhcC
Q 007519 400 SWNS-------MVMGFSH----HGLANETLKVFESMLESGTHPNSVTFLGIL---SACSHAGL-VSRGWELFNAMFDVYK 464 (600)
Q Consensus 400 ~~~~-------l~~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~---~~~~~~g~-~~~a~~~~~~~~~~~~ 464 (600)
.-.. +-...+. .-+..+=+.+|+......+.-. .....++ .-+.+.|. -++|.++++.+.+
T Consensus 333 vs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrq-QLvh~L~~~Ak~lW~~g~~dekalnLLk~il~--- 408 (549)
T PF07079_consen 333 VSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQ-QLVHYLVFGAKHLWEIGQCDEKALNLLKLILQ--- 408 (549)
T ss_pred hhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHH-HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH---
Confidence 1111 1122221 1122233444555544322211 1112222 23444554 7888999988874
Q ss_pred CCC-CcchHHHHH----HHHhh---cCChHH---HHHHHHhCCCCC----CHHHHHHHHHH-HhhhhCCHHHHHHHHHHH
Q 007519 465 IQP-GPEHYVSMI----NLLGR---AGKIKE---AEEFVLRLPFEP----DHRIWGALLGA-CGFCEGNAEIAEHAAKRL 528 (600)
Q Consensus 465 ~~p-~~~~~~~l~----~~~~~---~g~~~~---A~~~~~~~~~~p----~~~~~~~l~~~-~~~~~g~~~~a~~~~~~~ 528 (600)
+.| |..+-|.+. .+|.. ...+.+ -+.++++.++.| +...-|.+..+ |.+.+|++.++.-...-+
T Consensus 409 ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL 488 (549)
T PF07079_consen 409 FTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWL 488 (549)
T ss_pred hccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 345 443333322 12211 111222 223344444443 34455666655 445899999999999999
Q ss_pred HhhCCCCCCcHHHHhHHHHhhCCcHHHHHHHHHH
Q 007519 529 LELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDM 562 (600)
Q Consensus 529 ~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 562 (600)
.++.| ++.+|..+|-.+....++++|++++..+
T Consensus 489 ~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 489 TKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 99999 9999999999999999999999988754
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.13 E-value=4.2e-05 Score=73.04 Aligned_cols=122 Identities=16% Similarity=0.081 Sum_probs=96.8
Q ss_pred HHHHHHHhcccCchHHHHHHHHHHHhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHhh
Q 007519 436 FLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLP-FEP-DHRIWGALLGACGF 513 (600)
Q Consensus 436 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~ 513 (600)
...++..+...++++.|..+++++.+. .|+ ....+++.+...++-.+|.+++++.. ..| +...+..-...+.
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl- 245 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLL- 245 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-
Confidence 445566667778889999999988764 344 55568888888888888888887764 344 4445555555667
Q ss_pred hhCCHHHHHHHHHHHHhhCCCCCCcHHHHhHHHHhhCCcHHHHHHHHHHh
Q 007519 514 CEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMG 563 (600)
Q Consensus 514 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 563 (600)
..++++.|+.+.+++.+..|++-.+|..|+.+|...|++++|+..+..+-
T Consensus 246 ~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 246 SKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred hcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 89999999999999999999999999999999999999999998776654
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.015 Score=59.58 Aligned_cols=100 Identities=14% Similarity=0.151 Sum_probs=61.8
Q ss_pred cCCChhHHHHHhhhcCCCCh-hhHHHHHHHH--HhcCChHHHHHHhhcCCC---CCceeHHHHHHHHHHCCChhHHHHHh
Q 007519 54 QNGRLSEARRLFEEMPERNV-VSWTAMICGL--ADAGRVCEARKLFEEMPE---RNVVSWNSMVVGLIRNGELNEARKVF 127 (600)
Q Consensus 54 ~~~~~~~A~~~~~~~~~~~~-~~~~~l~~~~--~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~ 127 (600)
..+++..|+....++.+..+ ..|..++.++ .|.|+.++|..+++.... .|..+...+-.+|...+..++|..+|
T Consensus 21 d~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Y 100 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLY 100 (932)
T ss_pred hhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHH
Confidence 45677777777777665222 2233444443 467777777777766543 35556666777777777777777777
Q ss_pred hcCCC--CCcccHHHHHHHHHhcCCHhH
Q 007519 128 NSMPI--KNVISWNAMIAGYVECCMMGE 153 (600)
Q Consensus 128 ~~~~~--~~~~~~~~l~~~~~~~~~~~~ 153 (600)
++... |+......+..+|.+.+++.+
T Consensus 101 e~~~~~~P~eell~~lFmayvR~~~yk~ 128 (932)
T KOG2053|consen 101 ERANQKYPSEELLYHLFMAYVREKSYKK 128 (932)
T ss_pred HHHHhhCCcHHHHHHHHHHHHHHHHHHH
Confidence 77766 554455555566666665543
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.12 E-value=5.3e-05 Score=61.91 Aligned_cols=100 Identities=20% Similarity=0.166 Sum_probs=71.0
Q ss_pred CCC-CcchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCCcHHH
Q 007519 465 IQP-GPEHYVSMINLLGRAGKIKEAEEFVLRLP-FEP-DHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVV 541 (600)
Q Consensus 465 ~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 541 (600)
..| +......++..+...|++++|.+.++.+. ..| +...+..+...+. ..|++++|+..++++++..|+++..+..
T Consensus 12 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~-~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 90 (135)
T TIGR02552 12 LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQ-MLKEYEEAIDAYALAAALDPDDPRPYFH 90 (135)
T ss_pred CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCCCChHHHHH
Confidence 345 34556667777778888888888877763 344 4455555666666 7788888888888888888877788888
Q ss_pred HhHHHHhhCCcHHHHHHHHHHhhc
Q 007519 542 LCNIYAASGRHVEEHKLRMDMGLK 565 (600)
Q Consensus 542 l~~~~~~~g~~~~A~~~~~~~~~~ 565 (600)
++.++...|++++|...++...+.
T Consensus 91 la~~~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 91 AAECLLALGEPESALKALDLAIEI 114 (135)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh
Confidence 888888888888888866655543
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.00084 Score=70.60 Aligned_cols=280 Identities=8% Similarity=-0.018 Sum_probs=153.3
Q ss_pred CCcchHHHHHHHHHhcCChhHHHHHHHHHHhhhcCCCCCChh-hHHHHHHHHHhcCChhhHHHHhcccCCCCchhHHHHH
Q 007519 195 KNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQ-SCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMI 273 (600)
Q Consensus 195 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~ 273 (600)
.+...+..|+..+...+++++|.++.+...+. .|+.. .|..+...+.+.++.+.+..+ .++
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~-----~P~~i~~yy~~G~l~~q~~~~~~~~lv-------------~~l 90 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKE-----HKKSISALYISGILSLSRRPLNDSNLL-------------NLI 90 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-----CCcceehHHHHHHHHHhhcchhhhhhh-------------hhh
Confidence 35567888999998999999999999877764 55543 344444466666766555444 122
Q ss_pred HHHHhcCChHHHHHHHhhCCC--CChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhcccchhhh
Q 007519 274 DGYLSVGQVSNAYYLFHNMPD--RDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLG 351 (600)
Q Consensus 274 ~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a 351 (600)
.......++.-...+...+.. .+..++..+..+|-+.|+.+++...|+++++.. +-|....+.+...++.. ++++|
T Consensus 91 ~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA 168 (906)
T PRK14720 91 DSFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKA 168 (906)
T ss_pred hhcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHH
Confidence 222222223222222222222 233466777888888888888888888888765 44455666666666666 77777
Q ss_pred HHHHHHHhhhcCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHc-CCC
Q 007519 352 RQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLES-GTH 430 (600)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-~~~ 430 (600)
..++..+... +...+++.++.++|.++..-++. +++.-..+.+.+... |..
T Consensus 169 ~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~~-------------d~d~f~~i~~ki~~~~~~~ 220 (906)
T PRK14720 169 ITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNSD-------------DFDFFLRIERKVLGHREFT 220 (906)
T ss_pred HHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCcc-------------cchHHHHHHHHHHhhhccc
Confidence 7666554332 44555666666666666522221 112222222222221 112
Q ss_pred CChhHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHH
Q 007519 431 PNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQP-GPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLG 509 (600)
Q Consensus 431 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~ 509 (600)
--..++..+-..|-..++++++..+++.+.+ ..| |.....-++..|. + +.+ +...+.-.+.
T Consensus 221 ~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~---~~~~n~~a~~~l~~~y~--~----------kY~---~~~~~ee~l~ 282 (906)
T PRK14720 221 RLVGLLEDLYEPYKALEDWDEVIYILKKILE---HDNKNNKAREELIRFYK--E----------KYK---DHSLLEDYLK 282 (906)
T ss_pred hhHHHHHHHHHHHhhhhhhhHHHHHHHHHHh---cCCcchhhHHHHHHHHH--H----------Hcc---CcchHHHHHH
Confidence 2223344455566677778888888888774 344 3444444444443 1 111 1111111111
Q ss_pred H--HhhhhCCHHHHHHHHHHHHhhCCCCCCcHH
Q 007519 510 A--CGFCEGNAEIAEHAAKRLLELDPLNAPAHV 540 (600)
Q Consensus 510 ~--~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 540 (600)
. .......+..++.-|++.+..+|++-..+.
T Consensus 283 ~s~l~~~~~~~~~~i~~fek~i~f~~G~yv~H~ 315 (906)
T PRK14720 283 MSDIGNNRKPVKDCIADFEKNIVFDTGNFVYHR 315 (906)
T ss_pred HhccccCCccHHHHHHHHHHHeeecCCCEEEEc
Confidence 1 110224567778888888777776544444
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.00019 Score=59.28 Aligned_cols=123 Identities=14% Similarity=0.128 Sum_probs=67.5
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh---hHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCCC--cchHHHHH
Q 007519 402 NSMVMGFSHHGLANETLKVFESMLESGTHPNS---VTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPG--PEHYVSMI 476 (600)
Q Consensus 402 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~ 476 (600)
..++..+ ..++...+...++.+.+.. +.+. .....+...+...|++++|...|+.+... ...|. ......|+
T Consensus 16 ~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 16 EQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARLRLA 92 (145)
T ss_pred HHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHHHHH
Confidence 3334444 3666666666677766642 2221 22223345566677777777777777664 21221 22344566
Q ss_pred HHHhhcCChHHHHHHHHhCCCCC-CHHHHHHHHHHHhhhhCCHHHHHHHHHHH
Q 007519 477 NLLGRAGKIKEAEEFVLRLPFEP-DHRIWGALLGACGFCEGNAEIAEHAAKRL 528 (600)
Q Consensus 477 ~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~l~~~~~~~~g~~~~a~~~~~~~ 528 (600)
.++...|++++|+..++..+..+ .+..+......+. ..|+.++|+..|+++
T Consensus 93 ~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~-~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYL-AQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHH-HCCCHHHHHHHHHHh
Confidence 66777777777777776654222 2233333344455 667777777766654
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.014 Score=56.39 Aligned_cols=418 Identities=13% Similarity=0.132 Sum_probs=241.4
Q ss_pred CCcccHHHHHHHHHhcCCHhHHHHHHHhccc---CCchhHHHHHHHHHhcCChhHHHHHHccCCC--CCcchHHHHHHHH
Q 007519 133 KNVISWNAMIAGYVECCMMGEAIVLFEEMEE---RNVVTWTSMISGYCRAGEVEEGYCLFRRMPR--KNVVSWTAMIGGF 207 (600)
Q Consensus 133 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~ 207 (600)
-|..+|..|++-+... -++++++.++++.. .....|..-|..-.+..+++..+++|.++.. -++..|...+..-
T Consensus 18 ~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLnlDLW~lYl~YV 96 (656)
T KOG1914|consen 18 YDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLNLDLWKLYLSYV 96 (656)
T ss_pred ccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHhHHHHHHHHH
Confidence 4778899999877666 89999999999884 3567888889999999999999999998874 3555666655543
Q ss_pred Hh-cCChhH----HHHHHHHHHhhhcCCCCCCh-hhHHHHHHH---------HHhcCChhhHHHHhcccCCCCc----hh
Q 007519 208 AW-NGFHKE----SLLLFIEMKGICDNGNNCNV-QSCNSMING---------YIRFGRLEEAQNLFDTVPVRDE----IS 268 (600)
Q Consensus 208 ~~-~~~~~~----a~~~~~~~~~~~~~~~~~~~-~~~~~l~~~---------~~~~~~~~~a~~~~~~~~~~~~----~~ 268 (600)
.+ .|+... -.+.|+-.... .|+.+-+ ..|+..+.. +....+++...++|.++..... ..
T Consensus 97 R~~~~~~~~~r~~m~qAy~f~l~k--ig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlEkL 174 (656)
T KOG1914|consen 97 RETKGKLFGYREKMVQAYDFALEK--IGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLEKL 174 (656)
T ss_pred HHHccCcchHHHHHHHHHHHHHHH--hccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHHHH
Confidence 33 233333 23344444442 2444432 233333332 2334456677777877762111 11
Q ss_pred HH------HHHHH-------HHhcCChHHHHHHHhhCCC------CC---------------hhhHHHHHHHHHhCCC--
Q 007519 269 WT------SMIDG-------YLSVGQVSNAYYLFHNMPD------RD---------------AVAWTAMISGLVQNEL-- 312 (600)
Q Consensus 269 ~~------~l~~~-------~~~~~~~~~A~~~~~~~~~------~~---------------~~~~~~li~~~~~~g~-- 312 (600)
|+ .=++. --+...+-.|.++++++.. .+ +..|-.+|.-=...+-
T Consensus 175 W~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~t 254 (656)
T KOG1914|consen 175 WKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLRT 254 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCccc
Confidence 11 11111 1123345556666655432 11 1124334432111111
Q ss_pred ------hhHHHHHHHH-HHHCCCCCChhHHH-HHH----HHHhcccch-------hhhHHHHHHHhhhcCCCchhHHHHH
Q 007519 313 ------FVEATYLFME-MRAHGVPPLNATFS-VLF----GAAGATANI-------DLGRQIHCVLMKTESESDLILENCL 373 (600)
Q Consensus 313 ------~~~a~~~~~~-m~~~g~~p~~~~~~-~l~----~~~~~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~l 373 (600)
..+..-.+++ |.-.+..|+..-.. ..+ +.+...|+. +++..+++.....-...+..+|..+
T Consensus 255 ~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~ 334 (656)
T KOG1914|consen 255 LDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFAL 334 (656)
T ss_pred ccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0122223332 22233444433211 111 122233333 3344444443333223334444443
Q ss_pred HHHHHhcC---ChHHHHHHHhcCC----CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-ChhHHHHHHHHhcc
Q 007519 374 ISMYAKCG---VIDNAYNIFSNMV----SRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHP-NSVTFLGILSACSH 445 (600)
Q Consensus 374 ~~~~~~~~---~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~ 445 (600)
.+.--..- ..+.....++++. ..-..+|-.+++.-.+..-.+.|..+|.+..+.+..+ +....++++..+|
T Consensus 335 a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c- 413 (656)
T KOG1914|consen 335 ADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC- 413 (656)
T ss_pred HhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-
Confidence 33221111 2444555555544 2223467778888888888999999999999998888 4556666666554
Q ss_pred cCchHHHHHHHHHHHhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhCC---CCCC--HHHHHHHHHHHhhhhCCHHH
Q 007519 446 AGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLP---FEPD--HRIWGALLGACGFCEGNAEI 520 (600)
Q Consensus 446 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~p~--~~~~~~l~~~~~~~~g~~~~ 520 (600)
.++..-|.++|+.-.+.++- ++.-....+..+...++-..|..+|++.. ..|+ ...|..++..-. .-||...
T Consensus 414 skD~~~AfrIFeLGLkkf~d--~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES-~vGdL~s 490 (656)
T KOG1914|consen 414 SKDKETAFRIFELGLKKFGD--SPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYES-NVGDLNS 490 (656)
T ss_pred cCChhHHHHHHHHHHHhcCC--ChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHH-hcccHHH
Confidence 67889999999988876443 34455667788889999999999998875 3443 467998888777 8899999
Q ss_pred HHHHHHHHHhhCCCC----CCcHHHHhHHHHhhCCcHHHHH
Q 007519 521 AEHAAKRLLELDPLN----APAHVVLCNIYAASGRHVEEHK 557 (600)
Q Consensus 521 a~~~~~~~~~~~p~~----~~~~~~l~~~~~~~g~~~~A~~ 557 (600)
+.++-++.....|.+ ...-..+.+-|.-.+++..-..
T Consensus 491 i~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~c~~~ 531 (656)
T KOG1914|consen 491 ILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYPCSLD 531 (656)
T ss_pred HHHHHHHHHHhcchhhcCCCChHHHHHHHHhhcccccccHH
Confidence 999999888866622 1223344555555555554444
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.01 Score=58.98 Aligned_cols=218 Identities=13% Similarity=0.088 Sum_probs=151.7
Q ss_pred ChhhHHHHhccCCCCCcchHHHHHHHHHcCCChhHHHHHhhhcCC-CChhhHHHHHHHH----------HhcCChHHHHH
Q 007519 26 FIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPE-RNVVSWTAMICGL----------ADAGRVCEARK 94 (600)
Q Consensus 26 ~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~l~~~~----------~~~g~~~~A~~ 94 (600)
..++|.+..+.- |.+..|..|.......-.++-|+..|-+... +.+.....|.... .--|++++|.+
T Consensus 678 gledA~qfiEdn--PHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek 755 (1189)
T KOG2041|consen 678 GLEDAIQFIEDN--PHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEK 755 (1189)
T ss_pred chHHHHHHHhcC--CchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhh
Confidence 356677666554 7777888888877777778888888777654 3332222222211 12489999999
Q ss_pred HhhcCCCCCceeHHHHHHHHHHCCChhHHHHHhhcCCC-----CCcccHHHHHHHHHhcCCHhHHHHHHHhcccCCchhH
Q 007519 95 LFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPI-----KNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTW 169 (600)
Q Consensus 95 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 169 (600)
+|-.+.++|.. +..+.+.||+-...++++.--. .-...++.+...++....|++|.+.+..... -
T Consensus 756 ~yld~drrDLA-----ielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~-----~ 825 (1189)
T KOG2041|consen 756 LYLDADRRDLA-----IELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD-----T 825 (1189)
T ss_pred hhhccchhhhh-----HHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-----h
Confidence 99888887754 7778888999999998887544 1225788888899999999999999886532 1
Q ss_pred HHHHHHHHhcCChhHHHHHHccCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHhcC
Q 007519 170 TSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFG 249 (600)
Q Consensus 170 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 249 (600)
...+.++.+..++++-+.+.+.+++ +....-.+...+...|.-++|.+.+-+-- .|- ..+..|...+
T Consensus 826 e~~~ecly~le~f~~LE~la~~Lpe-~s~llp~~a~mf~svGMC~qAV~a~Lr~s-------~pk-----aAv~tCv~Ln 892 (1189)
T KOG2041|consen 826 ENQIECLYRLELFGELEVLARTLPE-DSELLPVMADMFTSVGMCDQAVEAYLRRS-------LPK-----AAVHTCVELN 892 (1189)
T ss_pred HhHHHHHHHHHhhhhHHHHHHhcCc-ccchHHHHHHHHHhhchHHHHHHHHHhcc-------CcH-----HHHHHHHHHH
Confidence 2456777777788877777766665 44556677888888888888887765432 221 3456677888
Q ss_pred ChhhHHHHhcccCCCCchh
Q 007519 250 RLEEAQNLFDTVPVRDEIS 268 (600)
Q Consensus 250 ~~~~a~~~~~~~~~~~~~~ 268 (600)
+|.+|.++-+...-|...+
T Consensus 893 QW~~avelaq~~~l~qv~t 911 (1189)
T KOG2041|consen 893 QWGEAVELAQRFQLPQVQT 911 (1189)
T ss_pred HHHHHHHHHHhccchhHHH
Confidence 8888888888776555443
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.03 E-value=6.3e-05 Score=66.61 Aligned_cols=96 Identities=21% Similarity=0.206 Sum_probs=43.6
Q ss_pred ccCchHHHHHHHHHHHhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhCC-CCCCH-HHHHHHHHHHhhhhCCHHHH
Q 007519 445 HAGLVSRGWELFNAMFDVYKIQP-GPEHYVSMINLLGRAGKIKEAEEFVLRLP-FEPDH-RIWGALLGACGFCEGNAEIA 521 (600)
Q Consensus 445 ~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~-~~~~~l~~~~~~~~g~~~~a 521 (600)
+.+++.+|+..|.++++ +.| |+.-|..-..+|.+.|.++.|.+-.+... +.|.. .+|..+..++. ..|++++|
T Consensus 93 ~~~~Y~eAv~kY~~AI~---l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~-~~gk~~~A 168 (304)
T KOG0553|consen 93 KNKDYQEAVDKYTEAIE---LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYL-ALGKYEEA 168 (304)
T ss_pred HhhhHHHHHHHHHHHHh---cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHH-ccCcHHHH
Confidence 34444555555544442 244 34444444444555555555544444432 33332 24444444444 45555555
Q ss_pred HHHHHHHHhhCCCCCCcHHHHhH
Q 007519 522 EHAAKRLLELDPLNAPAHVVLCN 544 (600)
Q Consensus 522 ~~~~~~~~~~~p~~~~~~~~l~~ 544 (600)
++.|+++++++|++......|-.
T Consensus 169 ~~aykKaLeldP~Ne~~K~nL~~ 191 (304)
T KOG0553|consen 169 IEAYKKALELDPDNESYKSNLKI 191 (304)
T ss_pred HHHHHhhhccCCCcHHHHHHHHH
Confidence 55555555555544433333333
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.013 Score=58.32 Aligned_cols=218 Identities=11% Similarity=0.027 Sum_probs=134.7
Q ss_pred ChhHHHHHhhhcCCCChhhHHHHHHHHHhcCChHHHHHHhhcCCC-CCceeHHH----------HHHHHHHCCChhHHHH
Q 007519 57 RLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPE-RNVVSWNS----------MVVGLIRNGELNEARK 125 (600)
Q Consensus 57 ~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~----------l~~~~~~~~~~~~a~~ 125 (600)
.+++|.++.+.- |.+..|..|.......-.++-|+..|-+... +.+..--. -+..-.--|++++|.+
T Consensus 678 gledA~qfiEdn--PHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek 755 (1189)
T KOG2041|consen 678 GLEDAIQFIEDN--PHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEK 755 (1189)
T ss_pred chHHHHHHHhcC--CchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhh
Confidence 345555555443 6777888888776666667777766665543 22111000 1112223478888888
Q ss_pred HhhcCCCCCcccHHHHHHHHHhcCCHhHHHHHHHhccc-----CCchhHHHHHHHHHhcCChhHHHHHHccCCCCCcchH
Q 007519 126 VFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEE-----RNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSW 200 (600)
Q Consensus 126 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 200 (600)
++-.+-..|. .+..+.+.||+-...++++.-.. .-..+++.+.+.+.....|++|.+.+......
T Consensus 756 ~yld~drrDL-----Aielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~----- 825 (1189)
T KOG2041|consen 756 LYLDADRRDL-----AIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT----- 825 (1189)
T ss_pred hhhccchhhh-----hHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch-----
Confidence 8877755443 45667778888887777775432 12356777788888888888888887655321
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHhcCChhhHHHHhcccCCCCchhHHHHHHHHHhcC
Q 007519 201 TAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVG 280 (600)
Q Consensus 201 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~ 280 (600)
...+.++.+..++++-..+.+ ..+.+....-.+...+.+.|.-++|.+.|-+...|. ..+..|...+
T Consensus 826 e~~~ecly~le~f~~LE~la~--------~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~pk-----aAv~tCv~Ln 892 (1189)
T KOG2041|consen 826 ENQIECLYRLELFGELEVLAR--------TLPEDSELLPVMADMFTSVGMCDQAVEAYLRRSLPK-----AAVHTCVELN 892 (1189)
T ss_pred HhHHHHHHHHHhhhhHHHHHH--------hcCcccchHHHHHHHHHhhchHHHHHHHHHhccCcH-----HHHHHHHHHH
Confidence 124455555444444333322 235566667778888888888888888776655433 3456677778
Q ss_pred ChHHHHHHHhhCCCCChhh
Q 007519 281 QVSNAYYLFHNMPDRDAVA 299 (600)
Q Consensus 281 ~~~~A~~~~~~~~~~~~~~ 299 (600)
++.+|.++-++..-|.+.+
T Consensus 893 QW~~avelaq~~~l~qv~t 911 (1189)
T KOG2041|consen 893 QWGEAVELAQRFQLPQVQT 911 (1189)
T ss_pred HHHHHHHHHHhccchhHHH
Confidence 8888888877766554443
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.00099 Score=63.29 Aligned_cols=108 Identities=21% Similarity=0.257 Sum_probs=48.2
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCChhHHHH-HHHHhcccCchHHHHHHHHHHHhhcCCCCC-cchHHHHHHHHhhcCChH
Q 007519 409 SHHGLANETLKVFESMLESGTHPNSVTFLG-ILSACSHAGLVSRGWELFNAMFDVYKIQPG-PEHYVSMINLLGRAGKIK 486 (600)
Q Consensus 409 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~-l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~ 486 (600)
...|++++|+..++.+... .|+...|.. ....+...++.++|.+.++++... .|+ ......++.+|.+.|++.
T Consensus 317 ~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l---~P~~~~l~~~~a~all~~g~~~ 391 (484)
T COG4783 317 YLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALAL---DPNSPLLQLNLAQALLKGGKPQ 391 (484)
T ss_pred HHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc---CCCccHHHHHHHHHHHhcCChH
Confidence 3444455555555554442 333322222 224444555555555555555432 343 333444455555555555
Q ss_pred HHHHHHHhCC--CCCCHHHHHHHHHHHhhhhCCHHHHH
Q 007519 487 EAEEFVLRLP--FEPDHRIWGALLGACGFCEGNAEIAE 522 (600)
Q Consensus 487 ~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~g~~~~a~ 522 (600)
+|..++++.. .+.|+..|..+..+|. ..|+..++.
T Consensus 392 eai~~L~~~~~~~p~dp~~w~~LAqay~-~~g~~~~a~ 428 (484)
T COG4783 392 EAIRILNRYLFNDPEDPNGWDLLAQAYA-ELGNRAEAL 428 (484)
T ss_pred HHHHHHHHHhhcCCCCchHHHHHHHHHH-HhCchHHHH
Confidence 5555554432 2223444444555555 444444433
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=97.99 E-value=1.4e-05 Score=47.28 Aligned_cols=34 Identities=35% Similarity=0.532 Sum_probs=31.2
Q ss_pred hhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC
Q 007519 298 VAWTAMISGLVQNELFVEATYLFMEMRAHGVPPL 331 (600)
Q Consensus 298 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 331 (600)
.+||.+|.+|++.|++++|.++|++|.+.|+.||
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 3689999999999999999999999999999987
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.00013 Score=60.25 Aligned_cols=123 Identities=18% Similarity=0.129 Sum_probs=89.6
Q ss_pred HHHHHHHhcccCchHHHHHHHHHHHhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhCC-CCCCHH----HHHHHHH
Q 007519 436 FLGILSACSHAGLVSRGWELFNAMFDVYKIQP-GPEHYVSMINLLGRAGKIKEAEEFVLRLP-FEPDHR----IWGALLG 509 (600)
Q Consensus 436 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~----~~~~l~~ 509 (600)
|..++..+ ..++...+...++.+...++-.| .......++..+...|++++|...|+... ..|+.. ....+..
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~ 93 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLAR 93 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHH
Confidence 33444444 47888888888999987633322 23445567788999999999999999875 334432 3334555
Q ss_pred HHhhhhCCHHHHHHHHHHHHhhCCCCCCcHHHHhHHHHhhCCcHHHHHHHHH
Q 007519 510 ACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMD 561 (600)
Q Consensus 510 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 561 (600)
.+. ..|++++|+..++... -.+-.+..+...+.+|.+.|++++|...|+.
T Consensus 94 ~~~-~~~~~d~Al~~L~~~~-~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 94 ILL-QQGQYDEALATLQQIP-DEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHH-HcCCHHHHHHHHHhcc-CcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 666 8999999999997733 3333677888999999999999999997754
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=97.97 E-value=1.5e-05 Score=47.10 Aligned_cols=35 Identities=34% Similarity=0.739 Sum_probs=30.4
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh
Q 007519 399 VSWNSMVMGFSHHGLANETLKVFESMLESGTHPNS 433 (600)
Q Consensus 399 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 433 (600)
.+|+.++.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 36889999999999999999999999999988873
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.95 E-value=1.6e-05 Score=46.52 Aligned_cols=33 Identities=27% Similarity=0.365 Sum_probs=29.4
Q ss_pred hhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC
Q 007519 298 VAWTAMISGLVQNELFVEATYLFMEMRAHGVPP 330 (600)
Q Consensus 298 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 330 (600)
.+|+.++.+|.+.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578999999999999999999999999988887
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00014 Score=57.79 Aligned_cols=99 Identities=16% Similarity=0.106 Sum_probs=47.4
Q ss_pred HHHHHhcccCchHHHHHHHHHHHhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhCC-CCCC----HHHHHHHHHHH
Q 007519 438 GILSACSHAGLVSRGWELFNAMFDVYKIQP-GPEHYVSMINLLGRAGKIKEAEEFVLRLP-FEPD----HRIWGALLGAC 511 (600)
Q Consensus 438 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~----~~~~~~l~~~~ 511 (600)
.+...+...|++++|.+.++.+...+.-.| ....+..++.++.+.|++++|.+.++.+. ..|+ ...+..+..++
T Consensus 7 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 86 (119)
T TIGR02795 7 DAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSL 86 (119)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHH
Confidence 333444455555555555555544311111 12334445555555555555555555542 2222 22344444444
Q ss_pred hhhhCCHHHHHHHHHHHHhhCCCCCC
Q 007519 512 GFCEGNAEIAEHAAKRLLELDPLNAP 537 (600)
Q Consensus 512 ~~~~g~~~~a~~~~~~~~~~~p~~~~ 537 (600)
. ..|+.++|+..++++++..|+++.
T Consensus 87 ~-~~~~~~~A~~~~~~~~~~~p~~~~ 111 (119)
T TIGR02795 87 Q-ELGDKEKAKATLQQVIKRYPGSSA 111 (119)
T ss_pred H-HhCChHHHHHHHHHHHHHCcCChh
Confidence 4 556666666666666666664433
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.92 E-value=9.8e-05 Score=55.85 Aligned_cols=93 Identities=27% Similarity=0.209 Sum_probs=68.5
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHhCC-CCCCH-HHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCCcHHHHhHHHHh
Q 007519 471 HYVSMINLLGRAGKIKEAEEFVLRLP-FEPDH-RIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAA 548 (600)
Q Consensus 471 ~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~-~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 548 (600)
++..++..+...|++++|.+.+++.. ..|+. ..+..+...+. ..|++++|+..++++.+..|.++..+..++.++..
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYY-KLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHH
Confidence 35556777777888888888887753 34433 45555555666 77888888888888888888777788888888888
Q ss_pred hCCcHHHHHHHHHHhh
Q 007519 549 SGRHVEEHKLRMDMGL 564 (600)
Q Consensus 549 ~g~~~~A~~~~~~~~~ 564 (600)
.|++++|...+....+
T Consensus 81 ~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 81 LGKYEEALEAYEKALE 96 (100)
T ss_pred HHhHHHHHHHHHHHHc
Confidence 8888888887665543
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.90 E-value=2.5e-05 Score=45.71 Aligned_cols=33 Identities=24% Similarity=0.563 Sum_probs=28.1
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 007519 399 VSWNSMVMGFSHHGLANETLKVFESMLESGTHP 431 (600)
Q Consensus 399 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p 431 (600)
.+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578888888888888888888888888888877
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.0001 Score=65.71 Aligned_cols=111 Identities=18% Similarity=0.063 Sum_probs=91.2
Q ss_pred CC-CcchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHhhhhC--CHHHHHHHHHHHHhhCCCCCCcHH
Q 007519 466 QP-GPEHYVSMINLLGRAGKIKEAEEFVLRLP-FEP-DHRIWGALLGACGFCEG--NAEIAEHAAKRLLELDPLNAPAHV 540 (600)
Q Consensus 466 ~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~g--~~~~a~~~~~~~~~~~p~~~~~~~ 540 (600)
.| |...|..|+..|...|+.+.|...|.+.. +.| ++..+..+..++....| +..++..+++++++++|.|..+..
T Consensus 152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~ 231 (287)
T COG4235 152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALS 231 (287)
T ss_pred CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHH
Confidence 57 79999999999999999999999998874 444 55566666666542333 567899999999999999999999
Q ss_pred HHhHHHHhhCCcHHHHHHHHHHhhcCCccCCCcceE
Q 007519 541 VLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWL 576 (600)
Q Consensus 541 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 576 (600)
.|+..+...|++.+|...|+.|.+....-+|.-+.|
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~i 267 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLI 267 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHH
Confidence 999999999999999999999998877666654433
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00013 Score=58.11 Aligned_cols=96 Identities=17% Similarity=0.033 Sum_probs=79.2
Q ss_pred chHHHHHHHHhhcCChHHHHHHHHhCC-CCCC----HHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCC---CCcHHH
Q 007519 470 EHYVSMINLLGRAGKIKEAEEFVLRLP-FEPD----HRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLN---APAHVV 541 (600)
Q Consensus 470 ~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~----~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~ 541 (600)
.++..++..+.+.|++++|.+.++.+. ..|+ ...+..+...+. ..|+++.|+..+++++...|++ +.++..
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYY-AQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH-hhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 466778889999999999999998874 3343 235555666777 9999999999999999998865 456889
Q ss_pred HhHHHHhhCCcHHHHHHHHHHhhcC
Q 007519 542 LCNIYAASGRHVEEHKLRMDMGLKG 566 (600)
Q Consensus 542 l~~~~~~~g~~~~A~~~~~~~~~~~ 566 (600)
++.++...|++++|...++.+.+..
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHHC
Confidence 9999999999999999888777664
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00092 Score=62.27 Aligned_cols=206 Identities=14% Similarity=0.153 Sum_probs=114.2
Q ss_pred hHHHHHHHHHcCCChhHHHHHhhhcCC-----CC----hhhHHHHHHHHHhcCChHHHHHHhhcCCCCCceeHHHHHHHH
Q 007519 44 SYNAMLSGFLQNGRLSEARRLFEEMPE-----RN----VVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGL 114 (600)
Q Consensus 44 ~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~ 114 (600)
.|......|-..|++++|.+.|.+..+ .+ ...|.....+|.+ +++++|++.++ ..+..|
T Consensus 37 ~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~-~~~~~Ai~~~~-----------~A~~~y 104 (282)
T PF14938_consen 37 LYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKK-GDPDEAIECYE-----------KAIEIY 104 (282)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH-TTHHHHHHHHH-----------HHHHHH
T ss_pred HHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh-hCHHHHHHHHH-----------HHHHHH
Confidence 455666777777777777777776542 11 1123333333322 25555554444 345667
Q ss_pred HHCCChhHHHHHhhcCCCCCcccHHHHHHHHHhc-CCHhHHHHHHHhccc-----CC----chhHHHHHHHHHhcCChhH
Q 007519 115 IRNGELNEARKVFNSMPIKNVISWNAMIAGYVEC-CMMGEAIVLFEEMEE-----RN----VVTWTSMISGYCRAGEVEE 184 (600)
Q Consensus 115 ~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~g~~~~ 184 (600)
...|++..|-+++.+ +...|... |+++.|.+.|++..+ .+ ...+..+...+.+.|++++
T Consensus 105 ~~~G~~~~aA~~~~~-----------lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~ 173 (282)
T PF14938_consen 105 REAGRFSQAAKCLKE-----------LAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEE 173 (282)
T ss_dssp HHCT-HHHHHHHHHH-----------HHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHH
T ss_pred HhcCcHHHHHHHHHH-----------HHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHH
Confidence 777777777665544 45666666 788888888877652 11 2345566777888888888
Q ss_pred HHHHHccCCC-----C----Cc-chHHHHHHHHHhcCChhHHHHHHHHHHhhhcCCCCCC--hhhHHHHHHHHHh--cCC
Q 007519 185 GYCLFRRMPR-----K----NV-VSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCN--VQSCNSMINGYIR--FGR 250 (600)
Q Consensus 185 A~~~~~~~~~-----~----~~-~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~--~~~ 250 (600)
|.++|+++.. + +. ..+...+-++...||+..|...+++.... ++++..+ -.....|+.++-. ...
T Consensus 174 A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~-~~~F~~s~E~~~~~~l~~A~~~~D~e~ 252 (282)
T PF14938_consen 174 AIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQ-DPSFASSREYKFLEDLLEAYEEGDVEA 252 (282)
T ss_dssp HHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTT-STTSTTSHHHHHHHHHHHHHHTT-CCC
T ss_pred HHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCCCCcHHHHHHHHHHHHHHhCCHHH
Confidence 8888876542 1 11 12334445667778888888888888764 3333333 2344555665543 234
Q ss_pred hhhHHHHhcccCCCCchhHHHHH
Q 007519 251 LEEAQNLFDTVPVRDEISWTSMI 273 (600)
Q Consensus 251 ~~~a~~~~~~~~~~~~~~~~~l~ 273 (600)
++.+..-|+.+.+.|+.--..|+
T Consensus 253 f~~av~~~d~~~~ld~w~~~~l~ 275 (282)
T PF14938_consen 253 FTEAVAEYDSISRLDNWKTKMLL 275 (282)
T ss_dssp HHHHCHHHTTSS---HHHHHHHH
T ss_pred HHHHHHHHcccCccHHHHHHHHH
Confidence 55666666666666655444433
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.77 E-value=5.3e-05 Score=55.67 Aligned_cols=20 Identities=25% Similarity=0.325 Sum_probs=8.4
Q ss_pred HHHHHhhcCChHHHHHHHHh
Q 007519 475 MINLLGRAGKIKEAEEFVLR 494 (600)
Q Consensus 475 l~~~~~~~g~~~~A~~~~~~ 494 (600)
++.+|.+.|++++|.+++++
T Consensus 31 la~~~~~~~~y~~A~~~~~~ 50 (84)
T PF12895_consen 31 LAQCYFQQGKYEEAIELLQK 50 (84)
T ss_dssp HHHHHHHTTHHHHHHHHHHC
T ss_pred HHHHHHHCCCHHHHHHHHHH
Confidence 34444444444444444433
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.022 Score=53.38 Aligned_cols=282 Identities=15% Similarity=0.141 Sum_probs=137.5
Q ss_pred hHHHHHHHHHhcCChHHHHHHhhcCCCCCceeHHHHHHHHHHCCChhHHHHHhhcCCCCCcccHHHHHHHHHhcCCHhHH
Q 007519 75 SWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEA 154 (600)
Q Consensus 75 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 154 (600)
+|..+...-...|+.+-|..+++.=..+. .-+..+...|+.+.|+.---+-.++|. +|..|+..-.... ..+-
T Consensus 2 S~a~IA~~A~~~GR~~LA~~LL~~Ep~~~-----~qVplLL~m~e~e~AL~kAi~SgD~DL-i~~vLl~L~~~l~-~s~f 74 (319)
T PF04840_consen 2 SYAEIARKAYEEGRPKLATKLLELEPRAS-----KQVPLLLKMGEDELALNKAIESGDTDL-IYLVLLHLKRKLS-LSQF 74 (319)
T ss_pred CHHHHHHHHHHcChHHHHHHHHHcCCChH-----HHHHHHhcCCchHHHHHHHHHcCCccH-HHHHHHHHHHhCC-HHHH
Confidence 46777788888999999998887433321 124445556666666542222222221 3333333222221 1111
Q ss_pred HHHHHhcccCCchhHHHHHHHHHhcCChhHHHHHHccCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhhhcCCCCCC
Q 007519 155 IVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCN 234 (600)
Q Consensus 155 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 234 (600)
..++.. .|. . ..+...|++..+.+.-..+|.+-.+........+-.++. ..+.+.-...+....+.+... .+
T Consensus 75 ~~il~~--~p~--a-~~l~~~~~r~~~~~~L~~~y~q~d~~~~~a~~~l~~~~~-~~~~~~~~~~L~~a~~~y~~~--k~ 146 (319)
T PF04840_consen 75 FKILNQ--NPV--A-SNLYKKYCREQDRELLKDFYYQEDRFQELANLHLQEALS-QKDVEEKISFLKQAQKLYSKS--KN 146 (319)
T ss_pred HHHHHh--Ccc--h-HHHHHHHHHhccHHHHHHHHHhcchHHHHHHHHHHHHHh-CCChHHHHHHHHHHHHHHHhc--ch
Confidence 111111 121 1 234445666666666555554432211112222222222 234444444444444332111 11
Q ss_pred hhhHHHHHHHHHhcCChhhHH-HHhcccCCCCchhHHHHHHHHHhcCChHHHHHHHhhCCCCChhhHHHHHHHHHhCCCh
Q 007519 235 VQSCNSMINGYIRFGRLEEAQ-NLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELF 313 (600)
Q Consensus 235 ~~~~~~l~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~ 313 (600)
......++.-..+.-++.+.+ .-+.. .-...+.+.-+.-+...|+...|.++-.+..-|+...|...+.+++..++|
T Consensus 147 ~~f~~~~~e~q~~Ll~~Q~~Le~~~~~--~f~~~Sl~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w 224 (319)
T PF04840_consen 147 DAFEAKLIEEQIKLLEYQKELEEKYNT--NFVGLSLNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDW 224 (319)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcc--chhcCCHHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCH
Confidence 112222222111111111000 00100 011223444455666778888888888777778888888888888888888
Q ss_pred hHHHHHHHHHHHCCCCCChhHHHHHHHHHhcccchhhhHHHHHHHhhhcCCCchhHHHHHHHHHHhcCChHHHHHH
Q 007519 314 VEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNI 389 (600)
Q Consensus 314 ~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 389 (600)
++-..+... +-++..|..++.+|.+.|+..+|..+...+ .+..-+..|.++|++.+|.+.
T Consensus 225 ~eL~~fa~s------kKsPIGyepFv~~~~~~~~~~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 225 DELEKFAKS------KKSPIGYEPFVEACLKYGNKKEASKYIPKI----------PDEERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred HHHHHHHhC------CCCCCChHHHHHHHHHCCCHHHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHH
Confidence 776654331 223466777777777777777776666541 113456666777777666543
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.76 E-value=5.9e-05 Score=52.99 Aligned_cols=62 Identities=26% Similarity=0.156 Sum_probs=50.4
Q ss_pred CHHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCCcHHHHhHHHHhhC-CcHHHHHHHHHH
Q 007519 500 DHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASG-RHVEEHKLRMDM 562 (600)
Q Consensus 500 ~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~ 562 (600)
++..|......+. ..|++++|+..|+++++++|+++.++..++.++...| ++++|.+.++..
T Consensus 2 ~a~~~~~~g~~~~-~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~a 64 (69)
T PF13414_consen 2 NAEAWYNLGQIYF-QQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKA 64 (69)
T ss_dssp SHHHHHHHHHHHH-HTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHH
Confidence 3456777777777 8888999999999999999888888888898888888 688888866544
|
... |
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.04 Score=52.20 Aligned_cols=124 Identities=20% Similarity=0.269 Sum_probs=77.3
Q ss_pred HhcCC-hHHHHHHHhcCC---CCChhhHHHHHH----HHHh---cCChHHHHHHHHHHHHcCCCCChh----HHHHHHHH
Q 007519 378 AKCGV-IDNAYNIFSNMV---SRDLVSWNSMVM----GFSH---HGLANETLKVFESMLESGTHPNSV----TFLGILSA 442 (600)
Q Consensus 378 ~~~~~-~~~A~~~~~~~~---~~~~~~~~~l~~----~~~~---~~~~~~a~~~~~~m~~~~~~p~~~----~~~~l~~~ 442 (600)
-+.|. -++|.++++.+. +-|...-|.+.. +|.+ ...+.+-+.+-+-+.+.|++|-.. .-+.+.+|
T Consensus 390 W~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDA 469 (549)
T PF07079_consen 390 WEIGQCDEKALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADA 469 (549)
T ss_pred HhcCCccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHH
Confidence 34444 677888877765 345544443322 2322 223444444445555667777543 23333332
Q ss_pred --hcccCchHHHHHHHHHHHhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHH
Q 007519 443 --CSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGA 506 (600)
Q Consensus 443 --~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ 506 (600)
+...|++.++.-.-..+. .+.|++.+|..++-.+....++++|..++..+| |+..+++.
T Consensus 470 EyLysqgey~kc~~ys~WL~---~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP--~n~~~~ds 530 (549)
T PF07079_consen 470 EYLYSQGEYHKCYLYSSWLT---KIAPSPQAYRLLGLCLMENKRYQEAWEYLQKLP--PNERMRDS 530 (549)
T ss_pred HHHHhcccHHHHHHHHHHHH---HhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCC--CchhhHHH
Confidence 345788888876666555 468899999999888889999999999998887 45555443
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.0012 Score=66.44 Aligned_cols=140 Identities=14% Similarity=0.080 Sum_probs=85.1
Q ss_pred CCChhhHHHHHHHHHh--cC---ChHHHHHHHHHHHHcCCCCCh-hHHHHHHHHhccc--------CchHHHHHHHHHHH
Q 007519 395 SRDLVSWNSMVMGFSH--HG---LANETLKVFESMLESGTHPNS-VTFLGILSACSHA--------GLVSRGWELFNAMF 460 (600)
Q Consensus 395 ~~~~~~~~~l~~~~~~--~~---~~~~a~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~--------g~~~~a~~~~~~~~ 460 (600)
+.+...|..++.+... .+ +...|..+|++..+. .|+. ..+..+..++... +++..+.+..++..
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 5566777777776433 22 356788888888774 5654 3333322222111 12334444444433
Q ss_pred hhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhCC-CCCCHHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCC
Q 007519 461 DVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLP-FEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAP 537 (600)
Q Consensus 461 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 537 (600)
.......++..+..++-.....|++++|...++++. ..|+...|..+...+. ..|+.++|+..+++++.++|.++.
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~-~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYE-LKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhcCCCCch
Confidence 221122245667777666667788888888887764 6677666777777777 778888888888888888886553
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.74 E-value=1.7e-05 Score=58.34 Aligned_cols=78 Identities=23% Similarity=0.261 Sum_probs=61.8
Q ss_pred cCChHHHHHHHHhCC-CCC---CHHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCCcHHHHhHHHHhhCCcHHHHH
Q 007519 482 AGKIKEAEEFVLRLP-FEP---DHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHK 557 (600)
Q Consensus 482 ~g~~~~A~~~~~~~~-~~p---~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 557 (600)
.|+++.|+.+++++. ..| +...+..+..++. +.|++++|+.++++ .+.+|.++.....++.++...|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~-~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYF-QQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHH-HTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHH-HCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 578888988888874 333 3445555667777 99999999999999 77888777888888999999999999999
Q ss_pred HHHH
Q 007519 558 LRMD 561 (600)
Q Consensus 558 ~~~~ 561 (600)
.++.
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 7753
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.042 Score=51.94 Aligned_cols=127 Identities=17% Similarity=0.188 Sum_probs=82.5
Q ss_pred HHHHHHHHHhcccchhhhHHHHHHHhhhc-CCCchhHHHHHHHHHHhcCChHHHHHHHhcCC--CCChh-hHHHHHHHHH
Q 007519 334 TFSVLFGAAGATANIDLGRQIHCVLMKTE-SESDLILENCLISMYAKCGVIDNAYNIFSNMV--SRDLV-SWNSMVMGFS 409 (600)
Q Consensus 334 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~-~~~~l~~~~~ 409 (600)
.|...+....+..-++.|+.+|.++.+.+ +.+++.++++++..++ .|+...|..+|+.-. -||.. --+..+..+.
T Consensus 399 v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi 477 (660)
T COG5107 399 VFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPDSTLYKEKYLLFLI 477 (660)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 34445555556667777888888887777 5667777777777766 466777777777544 33433 3345566667
Q ss_pred hcCChHHHHHHHHHHHHcCCCCC--hhHHHHHHHHhcccCchHHHHHHHHHHHhh
Q 007519 410 HHGLANETLKVFESMLESGTHPN--SVTFLGILSACSHAGLVSRGWELFNAMFDV 462 (600)
Q Consensus 410 ~~~~~~~a~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 462 (600)
..++-+.|..+|+..... +..+ ...|..++..-..-|++..+..+=+++.+.
T Consensus 478 ~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~ 531 (660)
T COG5107 478 RINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL 531 (660)
T ss_pred HhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH
Confidence 777777888888755443 2222 356677777667777777777666666543
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00035 Score=67.20 Aligned_cols=104 Identities=14% Similarity=0.106 Sum_probs=72.2
Q ss_pred HHhcccCchHHHHHHHHHHHhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHhhhhCC
Q 007519 441 SACSHAGLVSRGWELFNAMFDVYKIQP-GPEHYVSMINLLGRAGKIKEAEEFVLRLP-FEP-DHRIWGALLGACGFCEGN 517 (600)
Q Consensus 441 ~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~g~ 517 (600)
..+...|+++.|++.|+++++. .| +...|..++.+|...|++++|+..++++. ..| +...|..+..++. ..|+
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~---~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~-~lg~ 85 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDL---DPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACM-KLEE 85 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHH-HhCC
Confidence 3345567777777777777753 45 46667777777788888888888777764 445 3455666666666 7888
Q ss_pred HHHHHHHHHHHHhhCCCCCCcHHHHhHHHHh
Q 007519 518 AEIAEHAAKRLLELDPLNAPAHVVLCNIYAA 548 (600)
Q Consensus 518 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 548 (600)
+++|+..++++++++|+++.....+..+..+
T Consensus 86 ~~eA~~~~~~al~l~P~~~~~~~~l~~~~~k 116 (356)
T PLN03088 86 YQTAKAALEKGASLAPGDSRFTKLIKECDEK 116 (356)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 8888888888888888777666665555333
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.088 Score=54.35 Aligned_cols=205 Identities=13% Similarity=0.157 Sum_probs=133.7
Q ss_pred HHHhcCChhhHHHHhccCCC--CCcchHHHHHHH--HHcCCChhHHHHHhhhcCC---CChhhHHHHHHHHHhcCChHHH
Q 007519 20 KYSKRGFIDEAKALFQLMPQ--RNVVSYNAMLSG--FLQNGRLSEARRLFEEMPE---RNVVSWTAMICGLADAGRVCEA 92 (600)
Q Consensus 20 ~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~--~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A 92 (600)
-....+++..|+....++.+ ||.. |.-++.+ +.+.|+.++|..+++.... .|..|...+-.+|.+.|..++|
T Consensus 18 d~ld~~qfkkal~~~~kllkk~Pn~~-~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~ 96 (932)
T KOG2053|consen 18 DLLDSSQFKKALAKLGKLLKKHPNAL-YAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEA 96 (932)
T ss_pred HHhhhHHHHHHHHHHHHHHHHCCCcH-HHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHH
Confidence 34566888888888888775 6654 3333433 5688999999988887653 5778999999999999999999
Q ss_pred HHHhhcCCC--CCceeHHHHHHHHHHCCChh----HHHHHhhcCCCCCcccHHHHHHHHHhcCC----------HhHHHH
Q 007519 93 RKLFEEMPE--RNVVSWNSMVVGLIRNGELN----EARKVFNSMPIKNVISWNAMIAGYVECCM----------MGEAIV 156 (600)
Q Consensus 93 ~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~----~a~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~A~~ 156 (600)
..+|++... |+......+..+|.+.+++. .|.++++..++ ++..+-++++.+...-. ..-|.+
T Consensus 97 ~~~Ye~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk-~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~ 175 (932)
T KOG2053|consen 97 VHLYERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPK-RAYYFWSVISLILQSIFSENELLDPILLALAEK 175 (932)
T ss_pred HHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc-ccchHHHHHHHHHHhccCCcccccchhHHHHHH
Confidence 999999887 66555555666777777665 46667764433 44455555555543311 223455
Q ss_pred HHHhcccCC--chh---HHHHHHHHHhcCChhHHHHHHcc-----CCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhh
Q 007519 157 LFEEMEERN--VVT---WTSMISGYCRAGEVEEGYCLFRR-----MPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGI 226 (600)
Q Consensus 157 ~~~~~~~~~--~~~---~~~l~~~~~~~g~~~~A~~~~~~-----~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 226 (600)
.++.+.+.+ ..+ ...-...+...|++++|..++.. ....+...-+.-+..+...+++.+..++-.++...
T Consensus 176 m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k 255 (932)
T KOG2053|consen 176 MVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEK 255 (932)
T ss_pred HHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHh
Confidence 555555322 111 11223345567889999988832 22223333445566777788888888888877765
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.051 Score=51.06 Aligned_cols=274 Identities=13% Similarity=0.076 Sum_probs=149.8
Q ss_pred hHHHHHHHHHcCCChhHHHHHhhhcCCCChhhHHHHHHHHHhcCChHHHHHHhhcCCCCCce-eHHHHHHHHHHCCChhH
Q 007519 44 SYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVV-SWNSMVVGLIRNGELNE 122 (600)
Q Consensus 44 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~ 122 (600)
+|..+...-...|+..-|..+++.=+.+... +-.+.+-|+.+.|+.--- ...|+. +|..|+.. -+.-....
T Consensus 2 S~a~IA~~A~~~GR~~LA~~LL~~Ep~~~~q-----VplLL~m~e~e~AL~kAi--~SgD~DLi~~vLl~L-~~~l~~s~ 73 (319)
T PF04840_consen 2 SYAEIARKAYEEGRPKLATKLLELEPRASKQ-----VPLLLKMGEDELALNKAI--ESGDTDLIYLVLLHL-KRKLSLSQ 73 (319)
T ss_pred CHHHHHHHHHHcChHHHHHHHHHcCCChHHH-----HHHHhcCCchHHHHHHHH--HcCCccHHHHHHHHH-HHhCCHHH
Confidence 5788888888999999999988865443221 344556677666643222 223333 34444432 22222222
Q ss_pred HHHHhhcCCCCCcccHHHHHHHHHhcCCHhHHHHHHHhcccCCchhHHHHHHHHHhcCC-------hhHHHHHHccCCCC
Q 007519 123 ARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGE-------VEEGYCLFRRMPRK 195 (600)
Q Consensus 123 a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~-------~~~A~~~~~~~~~~ 195 (600)
-..++... |. -..+...|++..+.+.-..+|.+-.+........+-.++.. .+ +..|.+.|......
T Consensus 74 f~~il~~~--p~---a~~l~~~~~r~~~~~~L~~~y~q~d~~~~~a~~~l~~~~~~-~~~~~~~~~L~~a~~~y~~~k~~ 147 (319)
T PF04840_consen 74 FFKILNQN--PV---ASNLYKKYCREQDRELLKDFYYQEDRFQELANLHLQEALSQ-KDVEEKISFLKQAQKLYSKSKND 147 (319)
T ss_pred HHHHHHhC--cc---hHHHHHHHHHhccHHHHHHHHHhcchHHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHhcchh
Confidence 22222222 21 13344455665565555555543222111111112222211 22 23344444433221
Q ss_pred CcchHHHHHHHHHhcCChhHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHhcCChhhHHHHhcccCCCCchhHHHHHHH
Q 007519 196 NVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDG 275 (600)
Q Consensus 196 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~ 275 (600)
.....++.-.. +-+++-+++...+ +......+.+.-+.-+...|+...|.++-.+..-|+..-|...+.+
T Consensus 148 --~f~~~~~e~q~------~Ll~~Q~~Le~~~--~~~f~~~Sl~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~a 217 (319)
T PF04840_consen 148 --AFEAKLIEEQI------KLLEYQKELEEKY--NTNFVGLSLNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKA 217 (319)
T ss_pred --HHHHHHHHHHH------HHHHHHHHHHHHh--ccchhcCCHHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 11111111111 1111111111111 1122234556667777788888899999888888888899999999
Q ss_pred HHhcCChHHHHHHHhhCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhcccchhhhHH
Q 007519 276 YLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQ 353 (600)
Q Consensus 276 ~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~ 353 (600)
++..+++++-..+-.. ++++..|...+.+|.+.|+..+|..+... ++ +..-+..|.+.|++..|.+
T Consensus 218 La~~~~w~eL~~fa~s--kKsPIGyepFv~~~~~~~~~~eA~~yI~k-----~~-----~~~rv~~y~~~~~~~~A~~ 283 (319)
T PF04840_consen 218 LAENKDWDELEKFAKS--KKSPIGYEPFVEACLKYGNKKEASKYIPK-----IP-----DEERVEMYLKCGDYKEAAQ 283 (319)
T ss_pred HHhcCCHHHHHHHHhC--CCCCCChHHHHHHHHHCCCHHHHHHHHHh-----CC-----hHHHHHHHHHCCCHHHHHH
Confidence 9999999888776554 45678889999999999998888887775 12 2344556666777666544
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.0012 Score=56.43 Aligned_cols=128 Identities=18% Similarity=0.215 Sum_probs=84.0
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--hhHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCC-CcchHHH
Q 007519 398 LVSWNSMVMGFSHHGLANETLKVFESMLESGTHPN--SVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQP-GPEHYVS 474 (600)
Q Consensus 398 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~ 474 (600)
...+..+...+...|++++|...|++..+....+. ...+..+..++.+.|++++|...++++.+. .| +...+..
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~ 111 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL---NPKQPSALNN 111 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcccHHHHHH
Confidence 34566667777788888888888888876432222 245667777788888888888888888753 45 4556667
Q ss_pred HHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCCcHHHHhHHHHhhC
Q 007519 475 MINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASG 550 (600)
Q Consensus 475 l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 550 (600)
++.+|...|+...+..-++. ..+.+++|++.++++++.+|++ +..++..+...|
T Consensus 112 lg~~~~~~g~~~~a~~~~~~-------------------A~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~ 165 (172)
T PRK02603 112 IAVIYHKRGEKAEEAGDQDE-------------------AEALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTG 165 (172)
T ss_pred HHHHHHHcCChHhHhhCHHH-------------------HHHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcC
Confidence 77777777776665533322 1233567888888888888855 444444444333
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.048 Score=50.64 Aligned_cols=268 Identities=14% Similarity=0.124 Sum_probs=164.1
Q ss_pred cCChHHHHHHHhhCC---CCChhhHHHHHHH--HHhCCChhHHHHHHHHHHHCCCCCChh--HHHHHHHHHhcccchhhh
Q 007519 279 VGQVSNAYYLFHNMP---DRDAVAWTAMISG--LVQNELFVEATYLFMEMRAHGVPPLNA--TFSVLFGAAGATANIDLG 351 (600)
Q Consensus 279 ~~~~~~A~~~~~~~~---~~~~~~~~~li~~--~~~~g~~~~a~~~~~~m~~~g~~p~~~--~~~~l~~~~~~~~~~~~a 351 (600)
.|+-..|.++-.+.. ..|....-.++.+ -.-.|+++.|.+-|+.|... |... .+..|.-..-+.|+.+.|
T Consensus 97 AGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaA 173 (531)
T COG3898 97 AGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAA 173 (531)
T ss_pred cCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHH
Confidence 344455554443322 2344444344433 23468888888888888752 2221 233333344567777777
Q ss_pred HHHHHHHhhhcCCCchhHHHHHHHHHHhcCChHHHHHHHhcCC-----CCChh--hHHHHHHHHH---hcCChHHHHHHH
Q 007519 352 RQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMV-----SRDLV--SWNSMVMGFS---HHGLANETLKVF 421 (600)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-----~~~~~--~~~~l~~~~~---~~~~~~~a~~~~ 421 (600)
+++-......-.. -.......+...+..|+++.|+++++.-. .+++. .-..|+.+-+ -..+...|...-
T Consensus 174 r~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A 252 (531)
T COG3898 174 RHYAERAAEKAPQ-LPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDA 252 (531)
T ss_pred HHHHHHHHhhccC-CchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHH
Confidence 7777665544332 23455677888888899999888887654 34432 1122222211 123455565555
Q ss_pred HHHHHcCCCCChhHHH-HHHHHhcccCchHHHHHHHHHHHhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhC---C-
Q 007519 422 ESMLESGTHPNSVTFL-GILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRL---P- 496 (600)
Q Consensus 422 ~~m~~~~~~p~~~~~~-~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~- 496 (600)
.+..+ +.|+..--. ....++.+.|+..++-.+++.+-+. .|.+.++.. ..+.+.|+.. ..-+++. .
T Consensus 253 ~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~---ePHP~ia~l--Y~~ar~gdta--~dRlkRa~~L~s 323 (531)
T COG3898 253 LEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKA---EPHPDIALL--YVRARSGDTA--LDRLKRAKKLES 323 (531)
T ss_pred HHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhc---CCChHHHHH--HHHhcCCCcH--HHHHHHHHHHHh
Confidence 54443 577764333 3347889999999999999998754 676665543 3345666543 2222222 1
Q ss_pred CCCCHH-HHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCCcHHHHhHHHHhh-CCcHHHHHHHHH
Q 007519 497 FEPDHR-IWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAAS-GRHVEEHKLRMD 561 (600)
Q Consensus 497 ~~p~~~-~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~ 561 (600)
++|++. +......+.. ..|++..|..-.+.+....| ...+|..|+++-... |+-.++..+.-.
T Consensus 324 lk~nnaes~~~va~aAl-da~e~~~ARa~Aeaa~r~~p-res~~lLlAdIeeAetGDqg~vR~wlAq 388 (531)
T COG3898 324 LKPNNAESSLAVAEAAL-DAGEFSAARAKAEAAAREAP-RESAYLLLADIEEAETGDQGKVRQWLAQ 388 (531)
T ss_pred cCccchHHHHHHHHHHH-hccchHHHHHHHHHHhhhCc-hhhHHHHHHHHHhhccCchHHHHHHHHH
Confidence 456543 4445555556 78999999999999999999 888999999987655 998888886643
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.0003 Score=67.70 Aligned_cols=89 Identities=15% Similarity=0.003 Sum_probs=76.3
Q ss_pred HHHHHhhcCChHHHHHHHHhCC-CCCC-HHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCCcHHHHhHHHHhhCCc
Q 007519 475 MINLLGRAGKIKEAEEFVLRLP-FEPD-HRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRH 552 (600)
Q Consensus 475 l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 552 (600)
.+..+...|++++|++.++++. ..|+ ...+..+..++. ..|++++|+..++++++++|+++..|..++.+|...|++
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~-~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANI-KLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCH
Confidence 4566778999999999999875 5554 556666777777 999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhh
Q 007519 553 VEEHKLRMDMGL 564 (600)
Q Consensus 553 ~~A~~~~~~~~~ 564 (600)
++|...++...+
T Consensus 87 ~eA~~~~~~al~ 98 (356)
T PLN03088 87 QTAKAALEKGAS 98 (356)
T ss_pred HHHHHHHHHHHH
Confidence 999997766543
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00053 Score=55.70 Aligned_cols=93 Identities=11% Similarity=-0.014 Sum_probs=76.1
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCCcHHHHhHHHHh
Q 007519 471 HYVSMINLLGRAGKIKEAEEFVLRLP-FEP-DHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAA 548 (600)
Q Consensus 471 ~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 548 (600)
.....+.-+...|++++|..+|+-+. ..| +..-|..+..++. ..+++++|+..|..+..++++||..+...+..+..
T Consensus 39 ~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q-~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~ 117 (165)
T PRK15331 39 GLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQ-LKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLL 117 (165)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHH
Confidence 34445556678999999999998874 334 4555666666677 89999999999999999999999999999999999
Q ss_pred hCCcHHHHHHHHHHhh
Q 007519 549 SGRHVEEHKLRMDMGL 564 (600)
Q Consensus 549 ~g~~~~A~~~~~~~~~ 564 (600)
.|+.+.|...++...+
T Consensus 118 l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 118 MRKAAKARQCFELVNE 133 (165)
T ss_pred hCCHHHHHHHHHHHHh
Confidence 9999999997766655
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.63 E-value=9.8e-05 Score=51.09 Aligned_cols=50 Identities=26% Similarity=0.179 Sum_probs=29.7
Q ss_pred hhCCHHHHHHHHHHHHhhCCCCCCcHHHHhHHHHhhCCcHHHHHHHHHHh
Q 007519 514 CEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMG 563 (600)
Q Consensus 514 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 563 (600)
..|++++|+..++++++..|+++.++..++.++...|++++|..+++.+.
T Consensus 9 ~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~ 58 (65)
T PF13432_consen 9 QQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERAL 58 (65)
T ss_dssp HCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 55666666666666666666666666666666666666666666555443
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00017 Score=49.82 Aligned_cols=61 Identities=28% Similarity=0.260 Sum_probs=45.9
Q ss_pred HHHHHhhcCChHHHHHHHHhCC-CCCCH-HHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCC
Q 007519 475 MINLLGRAGKIKEAEEFVLRLP-FEPDH-RIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNA 536 (600)
Q Consensus 475 l~~~~~~~g~~~~A~~~~~~~~-~~p~~-~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 536 (600)
++..+.+.|++++|.+.|+++. ..|+. ..+..+..++. ..|++++|+..++++++..|++|
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~-~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILY-QQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHH-HTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCcCCC
Confidence 5667888889999998888864 55654 45566666666 88999999999999999998664
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.0045 Score=60.76 Aligned_cols=112 Identities=11% Similarity=0.031 Sum_probs=64.9
Q ss_pred HHHHHccCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHhcCChhhHHHHhcccCCC
Q 007519 185 GYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVR 264 (600)
Q Consensus 185 A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 264 (600)
+.++-+++...+..+...+...+.+...+..|-++|..|-. ...++......++|++|..+-+...+-
T Consensus 735 lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD------------~ksiVqlHve~~~W~eAFalAe~hPe~ 802 (1081)
T KOG1538|consen 735 LIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGD------------LKSLVQLHVETQRWDEAFALAEKHPEF 802 (1081)
T ss_pred HHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhcc------------HHHHhhheeecccchHhHhhhhhCccc
Confidence 33333344334444555555555555566666666666542 124445556666666666666666544
Q ss_pred CchhHHHHHHHHHhcCChHHHHHHHhhCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHC
Q 007519 265 DEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAH 326 (600)
Q Consensus 265 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 326 (600)
-+.+|..-.+-++...++++|.+. |.+.|+..+|.++++++-..
T Consensus 803 ~~dVy~pyaqwLAE~DrFeEAqkA------------------fhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 803 KDDVYMPYAQWLAENDRFEEAQKA------------------FHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred cccccchHHHHhhhhhhHHHHHHH------------------HHHhcchHHHHHHHHHhhhh
Confidence 444555555555566666665544 56778888888888877654
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.005 Score=50.61 Aligned_cols=132 Identities=12% Similarity=0.102 Sum_probs=91.7
Q ss_pred CCCChhHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhCC-CCCC---HHHH
Q 007519 429 THPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLP-FEPD---HRIW 504 (600)
Q Consensus 429 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~---~~~~ 504 (600)
..|+...-..+..+..+.|+..+|...|++...- -+.-|+.....+..+....+++..|...++++. .+|. +...
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG-~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~ 163 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSG-IFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGH 163 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhcc-ccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCch
Confidence 4566666666777778888888888888877752 233367777778888888888888888877753 2221 2233
Q ss_pred HHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCCcHHHHhHHHHhhCCcHHHHHHHHHHh
Q 007519 505 GALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMG 563 (600)
Q Consensus 505 ~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 563 (600)
..+...+. ..|..++|+..|+.+++-.| .+..-...+..+.++|+.++|..-+..+.
T Consensus 164 Ll~aR~la-a~g~~a~Aesafe~a~~~yp-g~~ar~~Y~e~La~qgr~~ea~aq~~~v~ 220 (251)
T COG4700 164 LLFARTLA-AQGKYADAESAFEVAISYYP-GPQARIYYAEMLAKQGRLREANAQYVAVV 220 (251)
T ss_pred HHHHHHHH-hcCCchhHHHHHHHHHHhCC-CHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 34555666 77888888888888888888 67666677777788888777776444433
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.0006 Score=58.23 Aligned_cols=82 Identities=22% Similarity=0.122 Sum_probs=56.8
Q ss_pred cchHHHHHHHHhhcCChHHHHHHHHhCC-CCCC----HHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCCcHHHHh
Q 007519 469 PEHYVSMINLLGRAGKIKEAEEFVLRLP-FEPD----HRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLC 543 (600)
Q Consensus 469 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~----~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 543 (600)
...+..++..+...|++++|...+++.. ..|+ ...+..+...+. ..|++++|+..++++++..|+++..+..++
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 113 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYA-SNGEHDKALEYYHQALELNPKQPSALNNIA 113 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence 4456666777777777777777776653 2222 245556666666 778888888888888888887777777777
Q ss_pred HHHHhhCC
Q 007519 544 NIYAASGR 551 (600)
Q Consensus 544 ~~~~~~g~ 551 (600)
.++...|+
T Consensus 114 ~~~~~~g~ 121 (172)
T PRK02603 114 VIYHKRGE 121 (172)
T ss_pred HHHHHcCC
Confidence 77777666
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00022 Score=63.32 Aligned_cols=85 Identities=21% Similarity=0.144 Sum_probs=73.2
Q ss_pred HHHHhhcCChHHHHHHHHhCC-CCCCHHH-HHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCCcHHHHhHHHHhhCCcH
Q 007519 476 INLLGRAGKIKEAEEFVLRLP-FEPDHRI-WGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHV 553 (600)
Q Consensus 476 ~~~~~~~g~~~~A~~~~~~~~-~~p~~~~-~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 553 (600)
+.-+.+.+++++|...|.+.. +.|...+ |..-..+|. +.|.++.|++-.+.++.++|....+|..|+.+|...|+++
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~-~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYS-KLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHH-HhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHH
Confidence 444678899999999998864 7776555 556666788 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHH
Q 007519 554 EEHKLRMD 561 (600)
Q Consensus 554 ~A~~~~~~ 561 (600)
+|.+.|+.
T Consensus 167 ~A~~aykK 174 (304)
T KOG0553|consen 167 EAIEAYKK 174 (304)
T ss_pred HHHHHHHh
Confidence 99997643
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00056 Score=58.19 Aligned_cols=91 Identities=16% Similarity=-0.015 Sum_probs=72.0
Q ss_pred cchHHHHHHHHhhcCChHHHHHHHHhCC-CCCC----HHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCCcHHHHh
Q 007519 469 PEHYVSMINLLGRAGKIKEAEEFVLRLP-FEPD----HRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLC 543 (600)
Q Consensus 469 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~----~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 543 (600)
...+..++..+...|++++|...+++.. ..|+ ..++..+...+. ..|+.++|+..+++++++.|.+...+..++
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~-~~g~~~eA~~~~~~Al~~~~~~~~~~~~la 113 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHT-SNGEHTKALEYYFQALERNPFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCcCcHHHHHHHH
Confidence 5567778888888899999999888763 2232 246777777788 899999999999999999998888888888
Q ss_pred HHHH-------hhCCcHHHHHHHH
Q 007519 544 NIYA-------ASGRHVEEHKLRM 560 (600)
Q Consensus 544 ~~~~-------~~g~~~~A~~~~~ 560 (600)
.++. ..|++++|...++
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~ 137 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFD 137 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHH
Confidence 8888 7888887766443
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.0019 Score=59.86 Aligned_cols=132 Identities=16% Similarity=0.218 Sum_probs=93.8
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHH-hcccCchHHHHHHHHHHHhhcCCCCCcchHHHHHH
Q 007519 399 VSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSA-CSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMIN 477 (600)
Q Consensus 399 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~-~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 477 (600)
.+|-.++....+.+..+.|..+|.+..+.+ ..+...|...... +...++.+.|.++|+...+. +..+...|...+.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~--f~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK--FPSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH--HTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHH
Confidence 357778888888888888999998887432 3344445444443 33356777799999998875 3346677888888
Q ss_pred HHhhcCChHHHHHHHHhCC-CCCCH----HHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCC
Q 007519 478 LLGRAGKIKEAEEFVLRLP-FEPDH----RIWGALLGACGFCEGNAEIAEHAAKRLLELDPL 534 (600)
Q Consensus 478 ~~~~~g~~~~A~~~~~~~~-~~p~~----~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~ 534 (600)
.+.+.|+.+.|..+|++.. .-|.. ..|...+..-. +.|+.+....+.+++.+..|+
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~-~~Gdl~~v~~v~~R~~~~~~~ 139 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFES-KYGDLESVRKVEKRAEELFPE 139 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHH-HHS-HHHHHHHHHHHHHHTTT
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHhhh
Confidence 8899999999999998864 22332 47887777777 889999999999999888874
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00013 Score=41.51 Aligned_cols=31 Identities=39% Similarity=0.624 Sum_probs=25.2
Q ss_pred hhHHHHHHHHHhCCChhHHHHHHHHHHHCCC
Q 007519 298 VAWTAMISGLVQNELFVEATYLFMEMRAHGV 328 (600)
Q Consensus 298 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 328 (600)
++|+.++++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 3688888888888888888888888887764
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00093 Score=64.33 Aligned_cols=127 Identities=11% Similarity=0.120 Sum_probs=99.1
Q ss_pred HHHHHHhhhcCCCCCChhhHHHHHHHHHhcCChhhHHHHhcccCC------CCchhHHHHHHHHHhcCChHHHHHHHhhC
Q 007519 219 LFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPV------RDEISWTSMIDGYLSVGQVSNAYYLFHNM 292 (600)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 292 (600)
++..|.+.+..+.+.+...+..+++.+....+++.+..++.+... --+.+..+++..|.+.|..+.++.+++.=
T Consensus 50 ~~~~l~~k~~~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~ 129 (429)
T PF10037_consen 50 LYSELDKKFERKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNR 129 (429)
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhCh
Confidence 666666666666777888888888888888888888888777651 23445678888888888888888888765
Q ss_pred CC----CChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhcc
Q 007519 293 PD----RDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGAT 345 (600)
Q Consensus 293 ~~----~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~ 345 (600)
.. ||..++|.+|..+.+.|++..|.++...|..++.-.+..|+...+.+|.+-
T Consensus 130 ~~yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 130 LQYGIFPDNFSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hhcccCCChhhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 54 788889999999999999999999888888877777777777777766554
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0016 Score=60.34 Aligned_cols=77 Identities=17% Similarity=0.114 Sum_probs=37.4
Q ss_pred hhcCChHHHHHHHHhCC-CCC-----CHHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCCcHHHHhHHHHhhCCcH
Q 007519 480 GRAGKIKEAEEFVLRLP-FEP-----DHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHV 553 (600)
Q Consensus 480 ~~~g~~~~A~~~~~~~~-~~p-----~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 553 (600)
.+.|++.+|.+.+.+.. +.| +...|.....+.. +.|+.++|+...+.+++++|.-...+..-+.++...++|+
T Consensus 260 fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~-rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e 338 (486)
T KOG0550|consen 260 FKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNI-RLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWE 338 (486)
T ss_pred hhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhc-ccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555554432 222 2233333333334 4555555555555555555544455555555555555555
Q ss_pred HHHH
Q 007519 554 EEHK 557 (600)
Q Consensus 554 ~A~~ 557 (600)
+|.+
T Consensus 339 ~AV~ 342 (486)
T KOG0550|consen 339 EAVE 342 (486)
T ss_pred HHHH
Confidence 5555
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.0021 Score=52.12 Aligned_cols=93 Identities=9% Similarity=0.007 Sum_probs=50.7
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh-hHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCC-CcchHHH
Q 007519 397 DLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNS-VTFLGILSACSHAGLVSRGWELFNAMFDVYKIQP-GPEHYVS 474 (600)
Q Consensus 397 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~ 474 (600)
+....-.+...+...|++++|..+|+.+... .|.. .-|..|..++-..|++++|+..|..+.. +.| ++..+-.
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~--Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~---L~~ddp~~~~~ 108 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIY--DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQ---IKIDAPQAPWA 108 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh---cCCCCchHHHH
Confidence 3333444444555666666666666665542 3332 3344444555556666666666666553 234 4555556
Q ss_pred HHHHHhhcCChHHHHHHHHh
Q 007519 475 MINLLGRAGKIKEAEEFVLR 494 (600)
Q Consensus 475 l~~~~~~~g~~~~A~~~~~~ 494 (600)
++.++...|+.+.|.+.|+.
T Consensus 109 ag~c~L~lG~~~~A~~aF~~ 128 (157)
T PRK15363 109 AAECYLACDNVCYAIKALKA 128 (157)
T ss_pred HHHHHHHcCCHHHHHHHHHH
Confidence 66666666666666665554
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00012 Score=51.29 Aligned_cols=52 Identities=21% Similarity=0.267 Sum_probs=42.5
Q ss_pred hhCCHHHHHHHHHHHHhhCCCCCCcHHHHhHHHHhhCCcHHHHHHHHHHhhc
Q 007519 514 CEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLK 565 (600)
Q Consensus 514 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 565 (600)
..|++++|+..++++++..|+++.+...++.+|.+.|++++|.++++.+...
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 6788888888888888888888888888888888889988888877655443
|
... |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00087 Score=50.43 Aligned_cols=88 Identities=24% Similarity=0.280 Sum_probs=41.7
Q ss_pred HhcccCchHHHHHHHHHHHhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHhhhhCCH
Q 007519 442 ACSHAGLVSRGWELFNAMFDVYKIQP-GPEHYVSMINLLGRAGKIKEAEEFVLRLP-FEP-DHRIWGALLGACGFCEGNA 518 (600)
Q Consensus 442 ~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~g~~ 518 (600)
.+...|++++|...++.+.+. .| +...+..++..+...|++++|.+.++... ..| +...+..+...+. ..|+.
T Consensus 9 ~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 84 (100)
T cd00189 9 LYYKLGDYDEALEYYEKALEL---DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYY-KLGKY 84 (100)
T ss_pred HHHHHhcHHHHHHHHHHHHhc---CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHH-HHHhH
Confidence 334444555555555444432 22 22344445555555555555555554432 222 2234444444444 55666
Q ss_pred HHHHHHHHHHHhhCC
Q 007519 519 EIAEHAAKRLLELDP 533 (600)
Q Consensus 519 ~~a~~~~~~~~~~~p 533 (600)
+.|...++++++..|
T Consensus 85 ~~a~~~~~~~~~~~~ 99 (100)
T cd00189 85 EEALEAYEKALELDP 99 (100)
T ss_pred HHHHHHHHHHHccCC
Confidence 666666666555554
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.50 E-value=5.2e-05 Score=43.92 Aligned_cols=34 Identities=35% Similarity=0.418 Sum_probs=31.3
Q ss_pred HHHHHHhhCCCCCCcHHHHhHHHHhhCCcHHHHH
Q 007519 524 AAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHK 557 (600)
Q Consensus 524 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 557 (600)
+|+++++++|+++.+|..|+.+|...|++++|++
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 3789999999999999999999999999999863
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00076 Score=62.31 Aligned_cols=254 Identities=13% Similarity=0.004 Sum_probs=144.3
Q ss_pred HHhCCChhHHHHHHHHHHHCCCCCCh----hHHHHHHHHHhcccchhhhHHHHHH--Hhh--hcCCC-chhHHHHHHHHH
Q 007519 307 LVQNELFVEATYLFMEMRAHGVPPLN----ATFSVLFGAAGATANIDLGRQIHCV--LMK--TESES-DLILENCLISMY 377 (600)
Q Consensus 307 ~~~~g~~~~a~~~~~~m~~~g~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~--~~~--~~~~~-~~~~~~~l~~~~ 377 (600)
+|+.|++...+.+|+..++.| .-|. .+|..|-.+|...+++++|.+++.. ... .|-+. .......|.+.+
T Consensus 27 Lck~gdcraGv~ff~aA~qvG-TeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtl 105 (639)
T KOG1130|consen 27 LCKMGDCRAGVDFFKAALQVG-TEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTL 105 (639)
T ss_pred HHhccchhhhHHHHHHHHHhc-chHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchh
Confidence 567777777777777777766 2232 3344455566666777777766541 111 11110 111122344444
Q ss_pred HhcCChHHHHHHHhcCC---------CCChhhHHHHHHHHHhcCC--------------------hHHHHHHHHHHHH--
Q 007519 378 AKCGVIDNAYNIFSNMV---------SRDLVSWNSMVMGFSHHGL--------------------ANETLKVFESMLE-- 426 (600)
Q Consensus 378 ~~~~~~~~A~~~~~~~~---------~~~~~~~~~l~~~~~~~~~--------------------~~~a~~~~~~m~~-- 426 (600)
.-.|.+++|.....+-. -.....+-.+...|...|+ ++.|.+.|.+-.+
T Consensus 106 Kv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~ 185 (639)
T KOG1130|consen 106 KVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELS 185 (639)
T ss_pred hhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666655433322 0112233334444443331 2334444433221
Q ss_pred --cCCC-CChhHHHHHHHHhcccCchHHHHHHHHHH---HhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhCC---
Q 007519 427 --SGTH-PNSVTFLGILSACSHAGLVSRGWELFNAM---FDVYKIQP-GPEHYVSMINLLGRAGKIKEAEEFVLRLP--- 496 (600)
Q Consensus 427 --~~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~---~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--- 496 (600)
.|-. .....|..|...|.-.|+++.|+...+.- .+.+|-.. ....+..|+.++.-.|+++.|.+.++...
T Consensus 186 ~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LA 265 (639)
T KOG1130|consen 186 EKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLA 265 (639)
T ss_pred HHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHH
Confidence 1111 11245666666677778999988765532 22233322 35678889999999999999998887631
Q ss_pred -----CCCCHHHHHHHHHHHhhhhCCHHHHHHHHHHHHhh----C--CCCCCcHHHHhHHHHhhCCcHHHHHHHHHH
Q 007519 497 -----FEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLEL----D--PLNAPAHVVLCNIYAASGRHVEEHKLRMDM 562 (600)
Q Consensus 497 -----~~p~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~----~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 562 (600)
......+..++...|. -..+++.|+.+..+=+.+ + ......++.|+.++...|..++|..+.+.-
T Consensus 266 ielg~r~vEAQscYSLgNtyt-ll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~h 341 (639)
T KOG1130|consen 266 IELGNRTVEAQSCYSLGNTYT-LLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELH 341 (639)
T ss_pred HHhcchhHHHHHHHHhhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 1223444556666666 667888888877765542 1 224678889999999999999998855443
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0032 Score=58.68 Aligned_cols=130 Identities=12% Similarity=0.070 Sum_probs=62.5
Q ss_pred HHHHHHHhc-CChHHHHHHHhhCCC-----CC----hhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC-----hh-H
Q 007519 271 SMIDGYLSV-GQVSNAYYLFHNMPD-----RD----AVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPL-----NA-T 334 (600)
Q Consensus 271 ~l~~~~~~~-~~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-----~~-~ 334 (600)
.+...|... |++++|++.|++..+ .. ...+..+...+.+.|++++|+++|++....-...+ .. .
T Consensus 119 ~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~ 198 (282)
T PF14938_consen 119 ELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEY 198 (282)
T ss_dssp HHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHH
Confidence 344455555 566666666655433 11 12445566667777777777777777665432211 11 1
Q ss_pred HHHHHHHHhcccchhhhHHHHHHHhhhc--CCCc--hhHHHHHHHHHHh--cCChHHHHHHHhcCCCCChhh
Q 007519 335 FSVLFGAAGATANIDLGRQIHCVLMKTE--SESD--LILENCLISMYAK--CGVIDNAYNIFSNMVSRDLVS 400 (600)
Q Consensus 335 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~--~~~~~~l~~~~~~--~~~~~~A~~~~~~~~~~~~~~ 400 (600)
+...+-++...||+..|...++...... +..+ ..+...|+.++-. ...++.|..-|+.+.+.|...
T Consensus 199 ~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~~ld~w~ 270 (282)
T PF14938_consen 199 FLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSISRLDNWK 270 (282)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS---HHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccCccHHHH
Confidence 2222224445566666666666555432 2222 3344445555533 334566666666666555443
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00017 Score=40.95 Aligned_cols=30 Identities=37% Similarity=0.722 Sum_probs=22.6
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 007519 400 SWNSMVMGFSHHGLANETLKVFESMLESGT 429 (600)
Q Consensus 400 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~ 429 (600)
+|+.++++|++.|++++|.++|++|.+.|+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 677777777777777777777777777653
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0031 Score=63.51 Aligned_cols=130 Identities=12% Similarity=0.091 Sum_probs=93.5
Q ss_pred CCCCChhHHHHHHHHhcc-----cCchHHHHHHHHHHHhhcCCCCC-cchHHHHHHHHhhc--------CChHHHHHHHH
Q 007519 428 GTHPNSVTFLGILSACSH-----AGLVSRGWELFNAMFDVYKIQPG-PEHYVSMINLLGRA--------GKIKEAEEFVL 493 (600)
Q Consensus 428 ~~~p~~~~~~~l~~~~~~-----~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~--------g~~~~A~~~~~ 493 (600)
+.+.+...|...+.+... .++.+.|.++|+++.+. .|+ ...+..+..++... +++..+.+..+
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l---dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~ 408 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS---EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELD 408 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 346677888888877543 23477999999999864 785 55666655554332 22344555555
Q ss_pred hCC----CCCCHHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCCcHHHHhHHHHhhCCcHHHHHHHHHH
Q 007519 494 RLP----FEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDM 562 (600)
Q Consensus 494 ~~~----~~p~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 562 (600)
+.. ...++..+..+..... ..|++++|...++++++++| +...|..++.++...|+.++|.+.++..
T Consensus 409 ~a~al~~~~~~~~~~~ala~~~~-~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A 479 (517)
T PRK10153 409 NIVALPELNVLPRIYEILAVQAL-VKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTA 479 (517)
T ss_pred HhhhcccCcCChHHHHHHHHHHH-hcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 432 2334556666655555 78999999999999999999 7889999999999999999999966543
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.1 Score=48.58 Aligned_cols=284 Identities=14% Similarity=0.112 Sum_probs=151.6
Q ss_pred hHHHHHHHHHh--cCChHHHHHHhhcCC---CCCceeHHHHHH--HHHHCCChhHHHHHhhcCCC-CCccc--HHHHHHH
Q 007519 75 SWTAMICGLAD--AGRVCEARKLFEEMP---ERNVVSWNSMVV--GLIRNGELNEARKVFNSMPI-KNVIS--WNAMIAG 144 (600)
Q Consensus 75 ~~~~l~~~~~~--~g~~~~A~~~~~~~~---~~~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~-~~~~~--~~~l~~~ 144 (600)
.|..|-.+++. .|+-..|.+.-.+.. ..|......|+. .-.-.|+++.|.+-|+-|.. |.... ...|.-.
T Consensus 84 gyqALStGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~dPEtRllGLRgLyle 163 (531)
T COG3898 84 GYQALSTGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDDPETRLLGLRGLYLE 163 (531)
T ss_pred HHHHHhhhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcChHHHHHhHHHHHHH
Confidence 34444444433 456666666555433 244444433333 23345777777777777765 32211 1122222
Q ss_pred HHhcCCHhHHHHHHHhccc--C-CchhHHHHHHHHHhcCChhHHHHHHccCCC-----CCcc--hHHHHHHHH---HhcC
Q 007519 145 YVECCMMGEAIVLFEEMEE--R-NVVTWTSMISGYCRAGEVEEGYCLFRRMPR-----KNVV--SWTAMIGGF---AWNG 211 (600)
Q Consensus 145 ~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~--~~~~li~~~---~~~~ 211 (600)
.-+.|+.+.|+..-+..-. | -.....+++...+..|+++.|+++++.-.. ++.. .-..|+.+- .-.-
T Consensus 164 Aqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~lda 243 (531)
T COG3898 164 AQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDA 243 (531)
T ss_pred HHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcC
Confidence 2355777777776665543 2 235566677777777777777777765432 3321 111122111 1123
Q ss_pred ChhHHHHHHHHHHhhhcCCCCCChh-hHHHHHHHHHhcCChhhHHHHhcccCCCCchhHHHHHHHHHhcCChHHH----H
Q 007519 212 FHKESLLLFIEMKGICDNGNNCNVQ-SCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNA----Y 286 (600)
Q Consensus 212 ~~~~a~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A----~ 286 (600)
+...|...-.+..+. .||.. .-....+++.+.|++.++-.+++.+-+..++.--..+..+.+.|+.... .
T Consensus 244 dp~~Ar~~A~~a~KL-----~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~lY~~ar~gdta~dRlkRa 318 (531)
T COG3898 244 DPASARDDALEANKL-----APDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIALLYVRARSGDTALDRLKRA 318 (531)
T ss_pred ChHHHHHHHHHHhhc-----CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHHHHHHHhcCCCcHHHHHHHH
Confidence 455566655555543 55532 2334456677778887777777777644444434444445555554332 1
Q ss_pred HHHhhCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHH-hcccchhhhHHHHHHHhhhcCCC
Q 007519 287 YLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAA-GATANIDLGRQIHCVLMKTESES 365 (600)
Q Consensus 287 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~-~~~~~~~~a~~~~~~~~~~~~~~ 365 (600)
+-+..|+..+..+...+..+-...|++..|..--+.... ..|....|..|...- ...|+-.++...+....+.--.|
T Consensus 319 ~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~APrdP 396 (531)
T COG3898 319 KKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKAPRDP 396 (531)
T ss_pred HHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCCCCC
Confidence 234455555666666666777777777766665555544 356666666665533 34466666666666555544333
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.00033 Score=49.11 Aligned_cols=64 Identities=23% Similarity=0.267 Sum_probs=49.3
Q ss_pred cchHHHHHHHHhhcCChHHHHHHHHhCC-CCCC-HHHHHHHHHHHhhhhC-CHHHHHHHHHHHHhhCC
Q 007519 469 PEHYVSMINLLGRAGKIKEAEEFVLRLP-FEPD-HRIWGALLGACGFCEG-NAEIAEHAAKRLLELDP 533 (600)
Q Consensus 469 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~~g-~~~~a~~~~~~~~~~~p 533 (600)
+..|..++..+...|++++|+..|++.. ..|+ ...|..+..++. ..| ++++|+..++++++++|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~-~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYM-KLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHH-HTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH-HhCccHHHHHHHHHHHHHcCc
Confidence 4567778888888888888888887764 4554 456666666677 888 68999999999988887
|
... |
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.028 Score=50.79 Aligned_cols=171 Identities=8% Similarity=0.029 Sum_probs=100.1
Q ss_pred HHHHHHhcCChHHHHHHHhcCC--CCC-hhh---HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh--hHHHHHHHHhc
Q 007519 373 LISMYAKCGVIDNAYNIFSNMV--SRD-LVS---WNSMVMGFSHHGLANETLKVFESMLESGTHPNS--VTFLGILSACS 444 (600)
Q Consensus 373 l~~~~~~~~~~~~A~~~~~~~~--~~~-~~~---~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~--~~~~~l~~~~~ 444 (600)
....+...|++++|.+.|+.+. -|+ ... .-.++.++.+.+++++|...+++..+. .|+. ..+...+.+.+
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~--~P~~~~~~~a~Y~~g~~ 115 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYVLYMRGLT 115 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CcCCCchHHHHHHHHHh
Confidence 3444556778888888877775 222 222 123456677788888888888888764 2322 22323333322
Q ss_pred c--c---------------Cc---hHHHHHHHHHHHhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHH
Q 007519 445 H--A---------------GL---VSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIW 504 (600)
Q Consensus 445 ~--~---------------g~---~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~ 504 (600)
. . .+ ...|...|+.++ .-|-.+.-..+|...+..+...--...+
T Consensus 116 ~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li----------------~~yP~S~ya~~A~~rl~~l~~~la~~e~ 179 (243)
T PRK10866 116 NMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLV----------------RGYPNSQYTTDATKRLVFLKDRLAKYEL 179 (243)
T ss_pred hhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHH----------------HHCcCChhHHHHHHHHHHHHHHHHHHHH
Confidence 1 0 01 122333333333 3333344445555544443211111111
Q ss_pred HHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCC---CcHHHHhHHHHhhCCcHHHHHHHHHHh
Q 007519 505 GALLGACGFCEGNAEIAEHAAKRLLELDPLNA---PAHVVLCNIYAASGRHVEEHKLRMDMG 563 (600)
Q Consensus 505 ~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~ 563 (600)
.+...|. +.|.+.-|+.-++.+++..|+.+ .+...++.+|...|..++|..+.+.+.
T Consensus 180 -~ia~~Y~-~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 180 -SVAEYYT-KRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred -HHHHHHH-HcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 3344466 88999999999999999888655 556688899999999999999776654
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.00069 Score=48.11 Aligned_cols=55 Identities=20% Similarity=0.015 Sum_probs=39.8
Q ss_pred HHhhhhCCHHHHHHHHHHHHhhCCCCCCcHHHHhHHHHhhCCcHHHHHHHHHHhhc
Q 007519 510 ACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLK 565 (600)
Q Consensus 510 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 565 (600)
.+. ..++++.|++.++++++++|+++..+...+.++...|++++|.+.++...+.
T Consensus 4 ~~~-~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 4 IYL-QQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHH-hCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 344 6777777777777777777777777777777777777777777766555433
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.001 Score=61.45 Aligned_cols=128 Identities=9% Similarity=0.020 Sum_probs=84.6
Q ss_pred HHHHHHHHHhcccchhhhHHHHHHHh----hhcCCC-chhHHHHHHHHHHhcCChHHHHHHHhcCC-------CC--Chh
Q 007519 334 TFSVLFGAAGATANIDLGRQIHCVLM----KTESES-DLILENCLISMYAKCGVIDNAYNIFSNMV-------SR--DLV 399 (600)
Q Consensus 334 ~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-------~~--~~~ 399 (600)
.|..|-..|.-.|+++.|...++.-. +.|-.. ....+..+.+++.-.|+++.|.+.|+... .. ...
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 34555555566788888887776322 233221 23456678888888899999988887653 22 234
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHc----C-CCCChhHHHHHHHHhcccCchHHHHHHHHHHHh
Q 007519 400 SWNSMVMGFSHHGLANETLKVFESMLES----G-THPNSVTFLGILSACSHAGLVSRGWELFNAMFD 461 (600)
Q Consensus 400 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 461 (600)
+.-.|.+.|.-..++++|+.++.+-... + ..-....+.+|..++...|..++|..+.+.-.+
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 5566777888888888888887764432 1 122346777888888888888888877665443
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.06 Score=48.64 Aligned_cols=55 Identities=11% Similarity=-0.014 Sum_probs=30.4
Q ss_pred HHHhcccCchHHHHHHHHHHHhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHh
Q 007519 440 LSACSHAGLVSRGWELFNAMFDVYKIQP-GPEHYVSMINLLGRAGKIKEAEEFVLR 494 (600)
Q Consensus 440 ~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 494 (600)
..-|.+.|.+..|..-++.+.+.+.-.| .......++.+|...|..++|.++...
T Consensus 182 a~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~ 237 (243)
T PRK10866 182 AEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKI 237 (243)
T ss_pred HHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 3445556666666666666665533333 244555566666666666666555443
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.14 Score=51.95 Aligned_cols=113 Identities=10% Similarity=0.095 Sum_probs=80.2
Q ss_pred CCChhhHHHHHHHHHhcCChhhHHHHhcccCCCCchhHHHHHHHHHhcCChHHHHHHHhhCCCCChhhHHHHHHHHHhCC
Q 007519 232 NCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNE 311 (600)
Q Consensus 232 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g 311 (600)
.-...+.+--+.-+...|+-.+|.++-.++.-||-..|-.-+.++...+++++-+++-+.... +.-|.-...+|.+.|
T Consensus 681 ~f~dlSl~dTv~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~~~kweeLekfAkskks--PIGy~PFVe~c~~~~ 758 (829)
T KOG2280|consen 681 SFVDLSLHDTVTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALADIKKWEELEKFAKSKKS--PIGYLPFVEACLKQG 758 (829)
T ss_pred ccccCcHHHHHHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHhhhhHHHHHHHHhccCC--CCCchhHHHHHHhcc
Confidence 344455666666677788888888888888888888888888888888888877766555443 667777788888888
Q ss_pred ChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhcccchhhhHHHH
Q 007519 312 LFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIH 355 (600)
Q Consensus 312 ~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 355 (600)
+.++|...+.+... . .-...+|.+.|++.+|.+.-
T Consensus 759 n~~EA~KYiprv~~-----l----~ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 759 NKDEAKKYIPRVGG-----L----QEKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred cHHHHhhhhhccCC-----h----HHHHHHHHHhccHHHHHHHH
Confidence 88888877754321 1 14556677777776665543
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.00088 Score=46.76 Aligned_cols=60 Identities=27% Similarity=0.409 Sum_probs=38.5
Q ss_pred ccCchHHHHHHHHHHHhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhCC-CCCCHHHHHHH
Q 007519 445 HAGLVSRGWELFNAMFDVYKIQP-GPEHYVSMINLLGRAGKIKEAEEFVLRLP-FEPDHRIWGAL 507 (600)
Q Consensus 445 ~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l 507 (600)
..|++++|.++|+.+... .| +...+..++.+|.+.|++++|.++++++. ..|+...+..+
T Consensus 3 ~~~~~~~A~~~~~~~l~~---~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l 64 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQR---NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQL 64 (68)
T ss_dssp HTTHHHHHHHHHHHHHHH---TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHH
Confidence 456777777777777654 44 46666667777777777777777777764 55555444443
|
... |
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.069 Score=50.06 Aligned_cols=265 Identities=12% Similarity=0.005 Sum_probs=126.0
Q ss_pred HHHHhcCChhHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHhcCChhhHHHHhcccC---CCCchhHHHHHHHHHhcCC
Q 007519 205 GGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVP---VRDEISWTSMIDGYLSVGQ 281 (600)
Q Consensus 205 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~ 281 (600)
..+.+..++..|+..+....+. .+.+..-|..-+..+...++++++.--.+.-. +..........+++...++
T Consensus 57 n~~yk~k~Y~nal~~yt~Ai~~----~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~ 132 (486)
T KOG0550|consen 57 NAFYKQKTYGNALKNYTFAIDM----CPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSD 132 (486)
T ss_pred chHHHHhhHHHHHHHHHHHHHh----CccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHH
Confidence 3455666777777777777765 12223344444444555555555544333222 2223333334444444555
Q ss_pred hHHHHHHHhhCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCC-CCChhHHHHHHH-HHhcccchhhhHHHHHHHh
Q 007519 282 VSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGV-PPLNATFSVLFG-AAGATANIDLGRQIHCVLM 359 (600)
Q Consensus 282 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~ 359 (600)
..+|.+.++. ...+ ....++..++....... +|.-.++..+-. ++.-.++.+.|.++-..+.
T Consensus 133 ~i~A~~~~~~-----~~~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~il 196 (486)
T KOG0550|consen 133 LIEAEEKLKS-----KQAY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDIL 196 (486)
T ss_pred HHHHHHHhhh-----hhhh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHH
Confidence 5555544441 1111 11122222222222111 122223332222 3344555555555544444
Q ss_pred hhcCCCchhHHHHHHH--HHHhcCChHHHHHHHhcCCCCChh---------------hHHHHHHHHHhcCChHHHHHHHH
Q 007519 360 KTESESDLILENCLIS--MYAKCGVIDNAYNIFSNMVSRDLV---------------SWNSMVMGFSHHGLANETLKVFE 422 (600)
Q Consensus 360 ~~~~~~~~~~~~~l~~--~~~~~~~~~~A~~~~~~~~~~~~~---------------~~~~l~~~~~~~~~~~~a~~~~~ 422 (600)
+.... ..+..++. ++--.++.+.|...|++...-++. .|..=.+-..+.|++..|.+.|.
T Consensus 197 kld~~---n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yt 273 (486)
T KOG0550|consen 197 KLDAT---NAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYT 273 (486)
T ss_pred hcccc---hhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHH
Confidence 43221 11111121 122245556666666665522211 12222233456777788888877
Q ss_pred HHHHc---CCCCChhHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhC
Q 007519 423 SMLES---GTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPG-PEHYVSMINLLGRAGKIKEAEEFVLRL 495 (600)
Q Consensus 423 ~m~~~---~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 495 (600)
+.... ++.|+...|.....+..+.|+..+|+.-.+.+.. ++|. ...+..-+.++...++|++|.+-+++.
T Consensus 274 eal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~---iD~syikall~ra~c~l~le~~e~AV~d~~~a 347 (486)
T KOG0550|consen 274 EALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK---IDSSYIKALLRRANCHLALEKWEEAVEDYEKA 347 (486)
T ss_pred HhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh---cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77642 2334445566666666777888887777666653 3442 333444445556667777777777664
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.044 Score=54.18 Aligned_cols=79 Identities=13% Similarity=0.134 Sum_probs=43.2
Q ss_pred HHHhcccchhhhHHHHHHHhhhcCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhhHH-------------HHHH
Q 007519 340 GAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWN-------------SMVM 406 (600)
Q Consensus 340 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-------------~l~~ 406 (600)
.-+.+...+..|-++|..+-.. ..+++.....+++.+|..+-++.++--..+|- -.-.
T Consensus 755 ~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~DrFeEAqk 825 (1081)
T KOG1538|consen 755 TYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAENDRFEEAQK 825 (1081)
T ss_pred HHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhhhhHHHHHH
Confidence 3334444555555555544332 24666667777777777777766532211222 2234
Q ss_pred HHHhcCChHHHHHHHHHHHHc
Q 007519 407 GFSHHGLANETLKVFESMLES 427 (600)
Q Consensus 407 ~~~~~~~~~~a~~~~~~m~~~ 427 (600)
+|.+.|+-.+|..+++++...
T Consensus 826 AfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 826 AFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred HHHHhcchHHHHHHHHHhhhh
Confidence 556666667777777666543
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0036 Score=48.84 Aligned_cols=82 Identities=22% Similarity=0.095 Sum_probs=38.9
Q ss_pred HHHHHhhcCChHHHHHHHHhCC---CCCC--HHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCC---CCCcHHHHhHHH
Q 007519 475 MINLLGRAGKIKEAEEFVLRLP---FEPD--HRIWGALLGACGFCEGNAEIAEHAAKRLLELDPL---NAPAHVVLCNIY 546 (600)
Q Consensus 475 l~~~~~~~g~~~~A~~~~~~~~---~~p~--~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~ 546 (600)
+..++-..|+.++|..++++.. .... ...+..+...+. ..|+.++|+.++++.....|+ +......++.++
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr-~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLR-NLGRYDEALALLEEALEEFPDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHH
Confidence 3444445555555555554432 1111 123333444444 555555555555555555554 333334444555
Q ss_pred HhhCCcHHHHH
Q 007519 547 AASGRHVEEHK 557 (600)
Q Consensus 547 ~~~g~~~~A~~ 557 (600)
...|+.++|.+
T Consensus 86 ~~~gr~~eAl~ 96 (120)
T PF12688_consen 86 YNLGRPKEALE 96 (120)
T ss_pred HHCCCHHHHHH
Confidence 55555555555
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.005 Score=46.17 Aligned_cols=79 Identities=10% Similarity=0.129 Sum_probs=63.8
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHCCC-CCChhHHHHHHHHHhccc--------chhhhHHHHHHHhhhcCCCchhHHH
Q 007519 301 TAMISGLVQNELFVEATYLFMEMRAHGV-PPLNATFSVLFGAAGATA--------NIDLGRQIHCVLMKTESESDLILEN 371 (600)
Q Consensus 301 ~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~ 371 (600)
...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. ++-....+++.+...+++|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 3456666777999999999999999999 899999999999876543 2345667888888888889988888
Q ss_pred HHHHHHHh
Q 007519 372 CLISMYAK 379 (600)
Q Consensus 372 ~l~~~~~~ 379 (600)
.++..+.+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 88877654
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0051 Score=52.29 Aligned_cols=63 Identities=14% Similarity=0.172 Sum_probs=33.3
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--hhHHHHHHHHhcccCchHHHHHHHHHHHh
Q 007519 399 VSWNSMVMGFSHHGLANETLKVFESMLESGTHPN--SVTFLGILSACSHAGLVSRGWELFNAMFD 461 (600)
Q Consensus 399 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 461 (600)
..|..+...+...|++++|+..|++.......|. ..++..+..++...|++++|...++++..
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~ 100 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE 100 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3445555555556666666666666554321111 12445555555556666666666655553
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0068 Score=56.23 Aligned_cols=126 Identities=17% Similarity=0.098 Sum_probs=60.3
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHH-HhcccchhhhHHHHHHHhhhcCCCchhHHHHHHHHH
Q 007519 299 AWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGA-AGATANIDLGRQIHCVLMKTESESDLILENCLISMY 377 (600)
Q Consensus 299 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 377 (600)
+|-.++....+.+..+.|..+|.+.++.+ ..+...|...... +...++.+.|..+|+...+. +..+...+...++.+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 45556666666666666666666665332 1122223222222 22234444556666554443 333444555555555
Q ss_pred HhcCChHHHHHHHhcCCC--C----ChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 007519 378 AKCGVIDNAYNIFSNMVS--R----DLVSWNSMVMGFSHHGLANETLKVFESMLE 426 (600)
Q Consensus 378 ~~~~~~~~A~~~~~~~~~--~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 426 (600)
.+.++.+.|+.+|++... + ....|...+..-.+.|+.+.+..+.+++.+
T Consensus 81 ~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 81 IKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 555555555555555541 1 123555555555555555555555555554
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.25 Score=46.98 Aligned_cols=132 Identities=13% Similarity=0.128 Sum_probs=87.5
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCChhHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCCCcc-hHHHH
Q 007519 398 LVSWNSMVMGFSHHGLANETLKVFESMLESG-THPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPE-HYVSM 475 (600)
Q Consensus 398 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~-~~~~l 475 (600)
..+|...++...+..-.+.|..+|-+..+.| +.++...+++++..++ .|+...|.++|+.-... -||.. -.+-.
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~---f~d~~~y~~ky 472 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK---FPDSTLYKEKY 472 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh---CCCchHHHHHH
Confidence 3456667777777777788888888888777 5566677777766554 56777778888766653 23332 33345
Q ss_pred HHHHhhcCChHHHHHHHHhCC--CCCC--HHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCC
Q 007519 476 INLLGRAGKIKEAEEFVLRLP--FEPD--HRIWGALLGACGFCEGNAEIAEHAAKRLLELDPL 534 (600)
Q Consensus 476 ~~~~~~~g~~~~A~~~~~~~~--~~p~--~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~ 534 (600)
+..+.+-++-+.|..+|+... +..+ ...|..++..-. .-|+...+..+-+++.++.|.
T Consensus 473 l~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs-~~G~lN~v~sLe~rf~e~~pQ 534 (660)
T COG5107 473 LLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYES-MVGSLNNVYSLEERFRELVPQ 534 (660)
T ss_pred HHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHH-hhcchHHHHhHHHHHHHHcCc
Confidence 556677777788888887542 1222 456666776666 778888787777777777773
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.062 Score=50.96 Aligned_cols=161 Identities=19% Similarity=0.173 Sum_probs=105.8
Q ss_pred HHHHHHHHhcCChHHHHHHHhcCCCC-------ChhhHHHHHHHHHh---cCChHHHHHHHHHHHHcCCCCChhHHHHHH
Q 007519 371 NCLISMYAKCGVIDNAYNIFSNMVSR-------DLVSWNSMVMGFSH---HGLANETLKVFESMLESGTHPNSVTFLGIL 440 (600)
Q Consensus 371 ~~l~~~~~~~~~~~~A~~~~~~~~~~-------~~~~~~~l~~~~~~---~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~ 440 (600)
-.++-.|-...+++...++.+.+... ...+-.....++-+ .|+.++|+.++..+......+++.+|..+.
T Consensus 145 ~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~G 224 (374)
T PF13281_consen 145 INLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLG 224 (374)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHH
Confidence 34555688888888888888888632 22233344556666 789999999999866666677778877776
Q ss_pred HHhc---------ccCchHHHHHHHHHHHhhcCCCCCcchHHHHHHHHhhcCCh----HHHHHHH---Hh-C------CC
Q 007519 441 SACS---------HAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKI----KEAEEFV---LR-L------PF 497 (600)
Q Consensus 441 ~~~~---------~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~----~~A~~~~---~~-~------~~ 497 (600)
+.|- .....++|+..|.+.- .+.|+...--.++..+.-.|.. .+..++. .. + ..
T Consensus 225 RIyKD~~~~s~~~d~~~ldkAi~~Y~kgF---e~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~ 301 (374)
T PF13281_consen 225 RIYKDLFLESNFTDRESLDKAIEWYRKGF---EIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEK 301 (374)
T ss_pred HHHHHHHHHcCccchHHHHHHHHHHHHHH---cCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccc
Confidence 6542 1234778888888765 4456644333444444444432 1222322 11 1 13
Q ss_pred CCCHHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCC
Q 007519 498 EPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLN 535 (600)
Q Consensus 498 ~p~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~ 535 (600)
..+...+..++.++. -.||.+.|.+.+++++++.|+.
T Consensus 302 ~~dYWd~ATl~Ea~v-L~~d~~ka~~a~e~~~~l~~~~ 338 (374)
T PF13281_consen 302 MQDYWDVATLLEASV-LAGDYEKAIQAAEKAFKLKPPA 338 (374)
T ss_pred cccHHHHHHHHHHHH-HcCCHHHHHHHHHHHhhcCCcc
Confidence 346667788888888 8999999999999999998843
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.079 Score=43.85 Aligned_cols=131 Identities=11% Similarity=0.093 Sum_probs=87.4
Q ss_pred CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCCCcchHHH
Q 007519 395 SRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVS 474 (600)
Q Consensus 395 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ 474 (600)
.|++..--.|..++...|++.+|...|++...--+.-|......+.++....+++..|...++.+.+...-.-++.....
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 34555555677888888888888888888876444456667777778888888888888888888764211114666777
Q ss_pred HHHHHhhcCChHHHHHHHHhCC-CCCCHHHHHHHHHHHhhhhCCHHHHHHHHH
Q 007519 475 MINLLGRAGKIKEAEEFVLRLP-FEPDHRIWGALLGACGFCEGNAEIAEHAAK 526 (600)
Q Consensus 475 l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~~~~~~~~g~~~~a~~~~~ 526 (600)
+.+.|...|+..+|+..|+... .-|+...--.....+. ++|+..++..-+.
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~~ypg~~ar~~Y~e~La-~qgr~~ea~aq~~ 217 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAISYYPGPQARIYYAEMLA-KQGRLREANAQYV 217 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHhCCCHHHHHHHHHHHH-HhcchhHHHHHHH
Confidence 8888888888888888887764 3344443333333444 6676555544333
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0045 Score=56.25 Aligned_cols=98 Identities=11% Similarity=0.065 Sum_probs=46.5
Q ss_pred HHHHHHHhcccCchHHHHHHHHHHHhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhCC-CCCC----HHHHHHHHH
Q 007519 436 FLGILSACSHAGLVSRGWELFNAMFDVYKIQP-GPEHYVSMINLLGRAGKIKEAEEFVLRLP-FEPD----HRIWGALLG 509 (600)
Q Consensus 436 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~----~~~~~~l~~ 509 (600)
|...+......|++++|...|+.+.+.+.-.+ .+..+..++.+|...|++++|...|+.+. ..|+ ...+..+..
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~ 225 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV 225 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence 33333333444566666666666655421111 02344555555556666666655555542 1121 222333333
Q ss_pred HHhhhhCCHHHHHHHHHHHHhhCCC
Q 007519 510 ACGFCEGNAEIAEHAAKRLLELDPL 534 (600)
Q Consensus 510 ~~~~~~g~~~~a~~~~~~~~~~~p~ 534 (600)
.+. ..|+.+.|...++++++..|+
T Consensus 226 ~~~-~~g~~~~A~~~~~~vi~~yP~ 249 (263)
T PRK10803 226 IMQ-DKGDTAKAKAVYQQVIKKYPG 249 (263)
T ss_pred HHH-HcCCHHHHHHHHHHHHHHCcC
Confidence 344 555666666666665555553
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.013 Score=45.72 Aligned_cols=91 Identities=16% Similarity=0.250 Sum_probs=59.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCh--hHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCC-CcchHHHHHHHHh
Q 007519 404 MVMGFSHHGLANETLKVFESMLESGTHPNS--VTFLGILSACSHAGLVSRGWELFNAMFDVYKIQP-GPEHYVSMINLLG 480 (600)
Q Consensus 404 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~ 480 (600)
...++-..|+.++|+.+|++....|..... ..+..+...+...|++++|..+++.....+.-.+ +......+..++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 455667778888888888888887765543 3455566777788888888888887776422111 1222333445667
Q ss_pred hcCChHHHHHHHHh
Q 007519 481 RAGKIKEAEEFVLR 494 (600)
Q Consensus 481 ~~g~~~~A~~~~~~ 494 (600)
..|+.++|.+.+-.
T Consensus 87 ~~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 87 NLGRPKEALEWLLE 100 (120)
T ss_pred HCCCHHHHHHHHHH
Confidence 77888887776643
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0082 Score=54.61 Aligned_cols=84 Identities=12% Similarity=-0.031 Sum_probs=44.8
Q ss_pred hhcCChHHHHHHHHhCC-CCCCH----HHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCC---CcHHHHhHHHHhhCC
Q 007519 480 GRAGKIKEAEEFVLRLP-FEPDH----RIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNA---PAHVVLCNIYAASGR 551 (600)
Q Consensus 480 ~~~g~~~~A~~~~~~~~-~~p~~----~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~ 551 (600)
.+.|++++|...|+.+. ..|+. ..+..+...+. ..|++++|+..|+++++..|+++ .++..++.++...|+
T Consensus 154 ~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~-~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~ 232 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNY-NKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGD 232 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCC
Confidence 44566666666665543 22322 23444444455 66666666666666666555443 333344555656666
Q ss_pred cHHHHHHHHHHhh
Q 007519 552 HVEEHKLRMDMGL 564 (600)
Q Consensus 552 ~~~A~~~~~~~~~ 564 (600)
+++|..+++.+.+
T Consensus 233 ~~~A~~~~~~vi~ 245 (263)
T PRK10803 233 TAKAKAVYQQVIK 245 (263)
T ss_pred HHHHHHHHHHHHH
Confidence 6666665554443
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.02 Score=55.45 Aligned_cols=95 Identities=14% Similarity=0.061 Sum_probs=46.5
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHHC--CCCCChhHHHHHHHHHhcccchhhhHHHHHHHhhhcCCCchhHHHHHHHH
Q 007519 299 AWTAMISGLVQNELFVEATYLFMEMRAH--GVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISM 376 (600)
Q Consensus 299 ~~~~li~~~~~~g~~~~a~~~~~~m~~~--g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 376 (600)
....++..+....+.+.+..++.+.+.. ....-..|..++++.|...|..+.+..++..-...|+=||..+++.|++.
T Consensus 68 dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lmd~ 147 (429)
T PF10037_consen 68 DLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLMDH 147 (429)
T ss_pred HHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHHHH
Confidence 3444444444444455555555544443 12222333445555555555555555555555555555555555555555
Q ss_pred HHhcCChHHHHHHHhcC
Q 007519 377 YAKCGVIDNAYNIFSNM 393 (600)
Q Consensus 377 ~~~~~~~~~A~~~~~~~ 393 (600)
+.+.|++..|.++...|
T Consensus 148 fl~~~~~~~A~~V~~~~ 164 (429)
T PF10037_consen 148 FLKKGNYKSAAKVATEM 164 (429)
T ss_pred HhhcccHHHHHHHHHHH
Confidence 55555555555554444
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.043 Score=48.02 Aligned_cols=140 Identities=14% Similarity=0.106 Sum_probs=99.2
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccCchHHHHHHHHHHHhhc----CCCCCcchHHHH
Q 007519 400 SWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVY----KIQPGPEHYVSM 475 (600)
Q Consensus 400 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~~~p~~~~~~~l 475 (600)
+-+.++..+...|.+.-.+..+++..+..-+.++.....+.+.-.+.|+.+.|...|++..+.. +...+..+....
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 3455667777788888888999999886545566677778888889999999999999665442 222233334445
Q ss_pred HHHHhhcCChHHHHHHHHhCC-CCCCHHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCCcHH
Q 007519 476 INLLGRAGKIKEAEEFVLRLP-FEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHV 540 (600)
Q Consensus 476 ~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 540 (600)
...|.-++++.+|...+++++ ..|....++.--..|..-.|+..+|++..+.+++..| .+.+..
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P-~~~l~e 323 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDP-RHYLHE 323 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCC-ccchhh
Confidence 566778889999999999987 4444444433333333367999999999999999999 444433
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.013 Score=43.97 Aligned_cols=77 Identities=13% Similarity=0.218 Sum_probs=56.3
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCC-CCChhHHHHHHHHhcccC--------chHHHHHHHHHHHhhcCCCCCcchHHH
Q 007519 404 MVMGFSHHGLANETLKVFESMLESGT-HPNSVTFLGILSACSHAG--------LVSRGWELFNAMFDVYKIQPGPEHYVS 474 (600)
Q Consensus 404 l~~~~~~~~~~~~a~~~~~~m~~~~~-~p~~~~~~~l~~~~~~~g--------~~~~a~~~~~~~~~~~~~~p~~~~~~~ 474 (600)
.|..+...+++...-.+|+.++..|+ .|+..+|+.++.+.++.. ++-..+.+|+.+... +++|+..+|+.
T Consensus 31 ~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~-~lKP~~etYni 109 (120)
T PF08579_consen 31 NINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSN-KLKPNDETYNI 109 (120)
T ss_pred HHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHh-ccCCcHHHHHH
Confidence 45555666888888888888888888 788888888887655432 345567778888765 78888888888
Q ss_pred HHHHHhh
Q 007519 475 MINLLGR 481 (600)
Q Consensus 475 l~~~~~~ 481 (600)
++..+.+
T Consensus 110 vl~~Llk 116 (120)
T PF08579_consen 110 VLGSLLK 116 (120)
T ss_pred HHHHHHH
Confidence 7776654
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.0034 Score=44.47 Aligned_cols=63 Identities=25% Similarity=0.263 Sum_probs=43.0
Q ss_pred HHHHhhcCChHHHHHHHHhCC-CCCCH-HHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCCcH
Q 007519 476 INLLGRAGKIKEAEEFVLRLP-FEPDH-RIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAH 539 (600)
Q Consensus 476 ~~~~~~~g~~~~A~~~~~~~~-~~p~~-~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 539 (600)
...|.+.+++++|.++++++. ..|+. ..+......+. ..|++++|...++++++..|+++...
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~-~~g~~~~A~~~l~~~l~~~p~~~~~~ 66 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLF-QLGRYEEALEDLERALELSPDDPDAR 66 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHH-HhccHHHHHHHHHHHHHHCCCcHHHH
Confidence 346777888888888887764 45544 34444555555 88888888888888888888554443
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.055 Score=47.51 Aligned_cols=165 Identities=15% Similarity=0.099 Sum_probs=91.1
Q ss_pred HHHHHHhcCChHHHHHHHhcCCC--C----ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh--hHHHHHHHHhc
Q 007519 373 LISMYAKCGVIDNAYNIFSNMVS--R----DLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNS--VTFLGILSACS 444 (600)
Q Consensus 373 l~~~~~~~~~~~~A~~~~~~~~~--~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~--~~~~~l~~~~~ 444 (600)
....+...|++.+|...|+.+.. | -....-.++.++.+.|++++|...++++.+. -|+. ..+...+.+.+
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~--yP~~~~~~~A~Y~~g~~ 88 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL--YPNSPKADYALYMLGLS 88 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH---TT-TTHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCcchhhHHHHHHHH
Confidence 34445566777777777777651 1 1234445667777888888888888887764 2332 12222222221
Q ss_pred c-------------cCchHHHHHHHHHHHhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 007519 445 H-------------AGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGAC 511 (600)
Q Consensus 445 ~-------------~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~ 511 (600)
. .+...+|...| ..++.-|-.+....+|.+.+..+...--. .-..+...+
T Consensus 89 ~~~~~~~~~~~~~D~~~~~~A~~~~----------------~~li~~yP~S~y~~~A~~~l~~l~~~la~-~e~~ia~~Y 151 (203)
T PF13525_consen 89 YYKQIPGILRSDRDQTSTRKAIEEF----------------EELIKRYPNSEYAEEAKKRLAELRNRLAE-HELYIARFY 151 (203)
T ss_dssp HHHHHHHHH-TT---HHHHHHHHHH----------------HHHHHH-TTSTTHHHHHHHHHHHHHHHHH-HHHHHHHHH
T ss_pred HHHhCccchhcccChHHHHHHHHHH----------------HHHHHHCcCchHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 1 11122333333 33444444555555665555444310001 111234456
Q ss_pred hhhhCCHHHHHHHHHHHHhhCCCCC---CcHHHHhHHHHhhCCcHHHHH
Q 007519 512 GFCEGNAEIAEHAAKRLLELDPLNA---PAHVVLCNIYAASGRHVEEHK 557 (600)
Q Consensus 512 ~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~ 557 (600)
. +.|.+..|+.-++.+++..|+.+ .+...++.+|.+.|..+.|..
T Consensus 152 ~-~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~~ 199 (203)
T PF13525_consen 152 Y-KRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAADT 199 (203)
T ss_dssp H-CTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred H-HcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHHH
Confidence 6 89999999999999999999654 446778888999999885543
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.0019 Score=40.20 Aligned_cols=41 Identities=34% Similarity=0.410 Sum_probs=35.1
Q ss_pred HHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCCcHHHHhH
Q 007519 503 IWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCN 544 (600)
Q Consensus 503 ~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 544 (600)
++..+...+. ..|+.++|++.++++++..|+|+..+..++.
T Consensus 3 ~~~~la~~~~-~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 3 AWLALARAYR-RLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHH-HcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 5667777888 9999999999999999999999888877764
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.054 Score=46.38 Aligned_cols=117 Identities=16% Similarity=0.162 Sum_probs=76.3
Q ss_pred CCChhHHHHHHHHHh-----cccchhhhHHHHHHHhhhcCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHH
Q 007519 329 PPLNATFSVLFGAAG-----ATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNS 403 (600)
Q Consensus 329 ~p~~~~~~~l~~~~~-----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 403 (600)
.-+..+|..++..+. +.|.++-....+..|.+.|+.-|..+|+.|++.+=+ |.+- -..+|+ +
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ-----------~ 110 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQ-----------A 110 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHH-----------H
Confidence 445566666666554 346677777778888888888888888888887764 3321 111111 1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccCch-HHHHHHHHHHH
Q 007519 404 MVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLV-SRGWELFNAMF 460 (600)
Q Consensus 404 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~ 460 (600)
+..-| -.+.+-|++++++|...|+-||..++..++..+.+.+.. .+..++.-.|-
T Consensus 111 ~F~hy--p~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p~~K~~rmmYWmp 166 (228)
T PF06239_consen 111 EFMHY--PRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSHPMKKYRRMMYWMP 166 (228)
T ss_pred HhccC--cHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 11111 234567899999999999999999999999998776642 33334433333
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.0058 Score=58.47 Aligned_cols=97 Identities=14% Similarity=0.050 Sum_probs=66.7
Q ss_pred CcchHHHHHHHHhhcCChHHHHHHHHhC-CCCCCHH----HHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCCcHHHH
Q 007519 468 GPEHYVSMINLLGRAGKIKEAEEFVLRL-PFEPDHR----IWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVL 542 (600)
Q Consensus 468 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~----~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 542 (600)
+...++.++.+|...|++++|+..|++. ...|+.. .|.++..++. ..|+.++|+..+++++++.+ + .|..+
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya-~LGr~dEAla~LrrALelsn--~-~f~~i 149 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHA-YREEGKKAADCLRTALRDYN--L-KFSTI 149 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhcc--h-hHHHH
Confidence 4677888888899999999999998884 4677643 4777888888 88999999999999888732 1 12111
Q ss_pred hH--HHHhhCCcHHHHHHHHHHhhcCCc
Q 007519 543 CN--IYAASGRHVEEHKLRMDMGLKGVR 568 (600)
Q Consensus 543 ~~--~~~~~g~~~~A~~~~~~~~~~~~~ 568 (600)
.. .+....+.++..++++.+.+.|.+
T Consensus 150 ~~DpdL~plR~~pef~eLlee~rk~G~~ 177 (453)
T PLN03098 150 LNDPDLAPFRASPEFKELQEEARKGGED 177 (453)
T ss_pred HhCcchhhhcccHHHHHHHHHHHHhCCc
Confidence 10 111233445666677777777764
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.81 Score=46.71 Aligned_cols=314 Identities=12% Similarity=0.104 Sum_probs=177.1
Q ss_pred HHHHHHHcCCChhHHHHHhhhcCCCC---hhhHHHHHHHHHhcCC---hHHHHHHhhcCCC--CCceeHHHHHHHHHHCC
Q 007519 47 AMLSGFLQNGRLSEARRLFEEMPERN---VVSWTAMICGLADAGR---VCEARKLFEEMPE--RNVVSWNSMVVGLIRNG 118 (600)
Q Consensus 47 ~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~ 118 (600)
.+++-+...+.+..|.++-+.+..|. ..+|.....-+.+.-+ -+.+..+-+++.. ....+|..+++.....|
T Consensus 442 ~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~~~~iSy~~iA~~Ay~~G 521 (829)
T KOG2280|consen 442 VVIDRLVDRHLYSVAIQVAKLLNLPESQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKLTPGISYAAIARRAYQEG 521 (829)
T ss_pred hhhHHHHhcchhHHHHHHHHHhCCccccccHHHHHHHHHHHhccCccchHHHHHHHHHhcccCCCceeHHHHHHHHHhcC
Confidence 34555667788888888888877655 5666666666666632 2333334444444 45567888888888888
Q ss_pred ChhHHHHHhhcCCC--------CCcccHHHHHHHHHhcCCHhHHHHHHHhccc-CCchhHHHHHHHHHhcCChhHHHHHH
Q 007519 119 ELNEARKVFNSMPI--------KNVISWNAMIAGYVECCMMGEAIVLFEEMEE-RNVVTWTSMISGYCRAGEVEEGYCLF 189 (600)
Q Consensus 119 ~~~~a~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~ 189 (600)
+++-|..+++.=+. .+..-+...+.-+...||.+-...++-.+.+ -+...+. ....+.-.|..+|
T Consensus 522 R~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~------~~l~~~p~a~~lY 595 (829)
T KOG2280|consen 522 RFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLF------MTLRNQPLALSLY 595 (829)
T ss_pred cHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHH------HHHHhchhhhHHH
Confidence 88888888776543 1223344444555555665555555544432 1111111 1111222233333
Q ss_pred ccCCC-CCcchHHHHHHHHHhcCChhHHHHHH--HHHHhhhc--CCCCCChhhHHHHHHHHHhcCChh---h-------H
Q 007519 190 RRMPR-KNVVSWTAMIGGFAWNGFHKESLLLF--IEMKGICD--NGNNCNVQSCNSMINGYIRFGRLE---E-------A 254 (600)
Q Consensus 190 ~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~--~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~---~-------a 254 (600)
....+ .|..+ +- .+.++++-..++..| +...+. + ++..|+.. ...+++.+..... + -
T Consensus 596 ~~~~r~~~~~~---l~-d~y~q~dn~~~~a~~~~q~~~~~-~~~~~r~~~lk---~~a~~~a~sk~~s~e~ka~ed~~kL 667 (829)
T KOG2280|consen 596 RQFMRHQDRAT---LY-DFYNQDDNHQALASFHLQASYAA-ETIEGRIPALK---TAANAFAKSKEKSFEAKALEDQMKL 667 (829)
T ss_pred HHHHHhhchhh---hh-hhhhcccchhhhhhhhhhhhhhh-hhhcccchhHH---HHHHHHhhhhhhhhHHHHHHHHHHH
Confidence 32221 11111 00 111122222221111 110010 1 12333332 3333344333211 1 1
Q ss_pred HHHhcccC-----CCCchhHHHHHHHHHhcCChHHHHHHHhhCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCC
Q 007519 255 QNLFDTVP-----VRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVP 329 (600)
Q Consensus 255 ~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 329 (600)
..+.+.+. .-...+.+.-+.-+...|+..+|.++-.+..-||-..|-.-+.+++..++|++-+++-+.+.
T Consensus 668 l~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~~~kweeLekfAkskk----- 742 (829)
T KOG2280|consen 668 LKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALADIKKWEELEKFAKSKK----- 742 (829)
T ss_pred HHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHhhhhHHHHHHHHhccC-----
Confidence 11111111 11233455556677889999999999999999999999999999999999988666554332
Q ss_pred CChhHHHHHHHHHhcccchhhhHHHHHHHhhhcCCCchhHHHHHHHHHHhcCChHHHHHH
Q 007519 330 PLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNI 389 (600)
Q Consensus 330 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 389 (600)
++..|.....+|.+.|+.++|..++.+.... .-.+.+|.+.|++.+|.++
T Consensus 743 -sPIGy~PFVe~c~~~~n~~EA~KYiprv~~l---------~ekv~ay~~~~~~~eAad~ 792 (829)
T KOG2280|consen 743 -SPIGYLPFVEACLKQGNKDEAKKYIPRVGGL---------QEKVKAYLRVGDVKEAADL 792 (829)
T ss_pred -CCCCchhHHHHHHhcccHHHHhhhhhccCCh---------HHHHHHHHHhccHHHHHHH
Confidence 3677888999999999999999988654321 1467888888988888654
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.16 Score=44.66 Aligned_cols=136 Identities=14% Similarity=0.092 Sum_probs=93.2
Q ss_pred hhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhcccchhhhHHHHHHHhhhcCCCchhHHHH-----
Q 007519 298 VAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENC----- 372 (600)
Q Consensus 298 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----- 372 (600)
...+.++..+.-.|.+.-.+..+++..+...+.++.....+.+...+.|+.+.|...++...+..-..+-...+.
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 345566667777788888888888888876566677777788888888898888888887766543333333333
Q ss_pred HHHHHHhcCChHHHHHHHhcCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhH
Q 007519 373 LISMYAKCGVIDNAYNIFSNMV---SRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVT 435 (600)
Q Consensus 373 l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~ 435 (600)
....|.-++++..|...+.+++ +.|+..-|.-.-++.-.|+..+|++.++.|... .|...+
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l 321 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYL 321 (366)
T ss_pred hhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccch
Confidence 2334566778888888887776 334555555555555667888888888888764 454443
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.081 Score=47.76 Aligned_cols=102 Identities=17% Similarity=0.122 Sum_probs=75.4
Q ss_pred CCChhHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCC-CcchHHHHHHHHhhcC---ChHHHHHHHHhCC-CCCCHH-H
Q 007519 430 HPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQP-GPEHYVSMINLLGRAG---KIKEAEEFVLRLP-FEPDHR-I 503 (600)
Q Consensus 430 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~-~~p~~~-~ 503 (600)
+-|...|..|..+|...|+++.|...|.+..+. .| ++..+..+++++..+. ...++..+++++. .+|+.. +
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL---~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~ira 229 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRL---AGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRA 229 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHH
Confidence 556678888888999999999999999888764 44 5667777777765433 4567888888864 566544 4
Q ss_pred HHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCC
Q 007519 504 WGALLGACGFCEGNAEIAEHAAKRLLELDPLN 535 (600)
Q Consensus 504 ~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~ 535 (600)
...+...+. ..|++.+|...++.+++..|.+
T Consensus 230 l~lLA~~af-e~g~~~~A~~~Wq~lL~~lp~~ 260 (287)
T COG4235 230 LSLLAFAAF-EQGDYAEAAAAWQMLLDLLPAD 260 (287)
T ss_pred HHHHHHHHH-HcccHHHHHHHHHHHHhcCCCC
Confidence 444444566 8899999999999999987733
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.017 Score=54.02 Aligned_cols=94 Identities=17% Similarity=0.083 Sum_probs=77.1
Q ss_pred chHHHHHHHHhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCCcHHHHhHHHH
Q 007519 470 EHYVSMINLLGRAGKIKEAEEFVLRLP--FEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYA 547 (600)
Q Consensus 470 ~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 547 (600)
.+++.|+-+|.+.+++.+|++..++.. .+++...+---..++. ..|+++.|+..|+++++++|+|..+...|+..-.
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l-~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~ 336 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALL-ALGEYDLARDDFQKALKLEPSNKAARAELIKLKQ 336 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHH-hhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 367788999999999999999988864 3456667777788888 9999999999999999999999888888888877
Q ss_pred hhCCcHHHHH-HHHHHhh
Q 007519 548 ASGRHVEEHK-LRMDMGL 564 (600)
Q Consensus 548 ~~g~~~~A~~-~~~~~~~ 564 (600)
+.....+..+ +|.-|-.
T Consensus 337 k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 337 KIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 7777776644 7776643
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.022 Score=54.71 Aligned_cols=156 Identities=14% Similarity=0.141 Sum_probs=98.4
Q ss_pred hhH--HHHHHHHHhc-----CChHHHHHHHHHHHHc-CCCCCh-hHHHHHHHHhcc---------cCchHHHHHHHHHHH
Q 007519 399 VSW--NSMVMGFSHH-----GLANETLKVFESMLES-GTHPNS-VTFLGILSACSH---------AGLVSRGWELFNAMF 460 (600)
Q Consensus 399 ~~~--~~l~~~~~~~-----~~~~~a~~~~~~m~~~-~~~p~~-~~~~~l~~~~~~---------~g~~~~a~~~~~~~~ 460 (600)
..| ..++.+.... ...+.|+.+|.+.... .+.|+. ..|..+..++.. ..+..+|.++-+++.
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 556 5556554442 2345788888888721 245654 344444443321 223456666666666
Q ss_pred hhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhCC-CCCCHH-HHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCC
Q 007519 461 DVYKIQP-GPEHYVSMINLLGRAGKIKEAEEFVLRLP-FEPDHR-IWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAP 537 (600)
Q Consensus 461 ~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~-~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 537 (600)
+ +.| |+.....++.++.-.|+++.|...|++.. ..|+.. +|......+. -.|+.++|.+.++++++++|....
T Consensus 332 e---ld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~-~~G~~~~a~~~i~~alrLsP~~~~ 407 (458)
T PRK11906 332 D---ITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHF-HNEKIEEARICIDKSLQLEPRRRK 407 (458)
T ss_pred h---cCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHH-HcCCHHHHHHHHHHHhccCchhhH
Confidence 4 456 67777788888888888999999998875 677654 4444444445 679999999999999999995544
Q ss_pred cHHHH--hHHHHhhCCcHHHHHHH
Q 007519 538 AHVVL--CNIYAASGRHVEEHKLR 559 (600)
Q Consensus 538 ~~~~l--~~~~~~~g~~~~A~~~~ 559 (600)
+-..- +..|+.. ..++|++++
T Consensus 408 ~~~~~~~~~~~~~~-~~~~~~~~~ 430 (458)
T PRK11906 408 AVVIKECVDMYVPN-PLKNNIKLY 430 (458)
T ss_pred HHHHHHHHHHHcCC-chhhhHHHH
Confidence 43332 3345444 457888844
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.087 Score=47.36 Aligned_cols=119 Identities=17% Similarity=0.194 Sum_probs=83.8
Q ss_pred HHhcccCchHHHHHHHHHHHhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHH---HHHHhhhhC
Q 007519 441 SACSHAGLVSRGWELFNAMFDVYKIQP-GPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGAL---LGACGFCEG 516 (600)
Q Consensus 441 ~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l---~~~~~~~~g 516 (600)
......|++.+|...|..+... .| +......|+++|...|+.+.|..++..++.......+..+ +.... +..
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~---~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~-qaa 217 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQA---APENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLE-QAA 217 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHh---CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHH-HHh
Confidence 3456778888999988888764 34 4667778899999999999999999998844433333331 12222 222
Q ss_pred CHHHHHHHHHHHHhhCCCCCCcHHHHhHHHHhhCCcHHHHH-HHHHHhh
Q 007519 517 NAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHK-LRMDMGL 564 (600)
Q Consensus 517 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~-~~~~~~~ 564 (600)
+..+. ..+++-...+|+|...-..++..+...|+.++|.+ ++..|++
T Consensus 218 ~~~~~-~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~ 265 (304)
T COG3118 218 ATPEI-QDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRR 265 (304)
T ss_pred cCCCH-HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 22221 22445566889999999999999999999999999 7777765
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.033 Score=47.60 Aligned_cols=89 Identities=10% Similarity=0.078 Sum_probs=64.7
Q ss_pred CCChhhHHHHHHHHHh-----CCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhcc----------------cchhhhH
Q 007519 294 DRDAVAWTAMISGLVQ-----NELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGAT----------------ANIDLGR 352 (600)
Q Consensus 294 ~~~~~~~~~li~~~~~-----~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~----------------~~~~~a~ 352 (600)
.++..+|..++..|.+ .|..+=....++.|.+-|+.-|..+|+.|+..+-+. .+.+-+.
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i 123 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAI 123 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHH
Confidence 3566666666666654 466677777888888888888888888888887542 1234577
Q ss_pred HHHHHHhhhcCCCchhHHHHHHHHHHhcCC
Q 007519 353 QIHCVLMKTESESDLILENCLISMYAKCGV 382 (600)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 382 (600)
++++.|...|+-||..++..+++.+++.+.
T Consensus 124 ~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 124 DLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 788888888888888888888887776554
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.89 Score=42.11 Aligned_cols=227 Identities=11% Similarity=-0.031 Sum_probs=92.6
Q ss_pred CCceeHHHHHHHHHHCCChhHHHHHhhcCCCCCcccHHHHHHHHHhcCCH----hHHHHHHHhc--ccCCchhHHHHHHH
Q 007519 102 RNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMM----GEAIVLFEEM--EERNVVTWTSMISG 175 (600)
Q Consensus 102 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~A~~~~~~~--~~~~~~~~~~l~~~ 175 (600)
+|.......+..+...|..+....+.+-+..+|+..-...+.++...|+. .++...+..+ .+++..+....+.+
T Consensus 35 ~d~~vR~~A~~aL~~~~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~D~d~~VR~~A~~a 114 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGGQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALEDKSACVRASAINA 114 (280)
T ss_pred CCHHHHHHHHHHHHhcCcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 44444444455555444433322222222234444444555555555542 2344444443 23444444444444
Q ss_pred HHhcCCh-----hHHHHHHcc-CCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHhcC
Q 007519 176 YCRAGEV-----EEGYCLFRR-MPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFG 249 (600)
Q Consensus 176 ~~~~g~~-----~~A~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 249 (600)
++..+.- ..+...+.. +..++..+-...+.++.+.++ ..++..+..+.. .+|...-...+.++.+.+
T Consensus 115 LG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~------d~~~~VR~~A~~aLg~~~ 187 (280)
T PRK09687 115 TGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVIND-EAAIPLLINLLK------DPNGDVRNWAAFALNSNK 187 (280)
T ss_pred HhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCC-HHHHHHHHHHhc------CCCHHHHHHHHHHHhcCC
Confidence 4443211 122222222 222344444444555555444 344444444443 233333333333333321
Q ss_pred -ChhhHHHHh-cccCCCCchhHHHHHHHHHhcCChHHHHHHHhhCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCC
Q 007519 250 -RLEEAQNLF-DTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHG 327 (600)
Q Consensus 250 -~~~~a~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 327 (600)
+...+...+ ..+..++..+....+.++.+.|+..-.-.+.+.+..++ .....+.++...|+. +|+..+..+.+.
T Consensus 188 ~~~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~~~av~~Li~~L~~~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~- 263 (280)
T PRK09687 188 YDNPDIREAFVAMLQDKNEEIRIEAIIGLALRKDKRVLSVLIKELKKGT--VGDLIIEAAGELGDK-TLLPVLDTLLYK- 263 (280)
T ss_pred CCCHHHHHHHHHHhcCCChHHHHHHHHHHHccCChhHHHHHHHHHcCCc--hHHHHHHHHHhcCCH-hHHHHHHHHHhh-
Confidence 112222222 22224445555555555555555322222223332222 223445555555553 455555555543
Q ss_pred CCCChhHHHHHHH
Q 007519 328 VPPLNATFSVLFG 340 (600)
Q Consensus 328 ~~p~~~~~~~l~~ 340 (600)
.||..+-...+.
T Consensus 264 -~~d~~v~~~a~~ 275 (280)
T PRK09687 264 -FDDNEIITKAID 275 (280)
T ss_pred -CCChhHHHHHHH
Confidence 234444433333
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.63 Score=40.85 Aligned_cols=50 Identities=16% Similarity=0.151 Sum_probs=27.6
Q ss_pred HHHHhcccCchHHHHHHHHHHHhhcCCCC-CcchHHHHHHHHhhcCChHHH
Q 007519 439 ILSACSHAGLVSRGWELFNAMFDVYKIQP-GPEHYVSMINLLGRAGKIKEA 488 (600)
Q Consensus 439 l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A 488 (600)
+...|.+.|.+..|..-++.+.+.+.-.+ .......++.+|.+.|..+.|
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 34456666777777777777666533222 134455666666666666543
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.94 Score=41.94 Aligned_cols=236 Identities=14% Similarity=0.029 Sum_probs=132.8
Q ss_pred HHHhccCCCCCcchHHHHHHHHHcCCChhHHHHHhhhcCCCChhhHHHHHHHHHhcCCh----HHHHHHhhcC--CCCCc
Q 007519 31 KALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRV----CEARKLFEEM--PERNV 104 (600)
Q Consensus 31 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~----~~A~~~~~~~--~~~~~ 104 (600)
..+++.+..+|.......+.++...|..+-...+..-+..+|+..-...+.++..-|+. .++...+..+ .+++.
T Consensus 26 ~~L~~~L~d~d~~vR~~A~~aL~~~~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~D~d~ 105 (280)
T PRK09687 26 DELFRLLDDHNSLKRISSIRVLQLRGGQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALEDKSA 105 (280)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcCcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhcCCCH
Confidence 33444445567767777777777766544444444433346666666666667776653 4566666654 33666
Q ss_pred eeHHHHHHHHHHCCCh-----hHHHHHhhc-CCCCCcccHHHHHHHHHhcCCHhHHHHHHHhcccCCchhHHHHHHHHHh
Q 007519 105 VSWNSMVVGLIRNGEL-----NEARKVFNS-MPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCR 178 (600)
Q Consensus 105 ~~~~~l~~~~~~~~~~-----~~a~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~ 178 (600)
......+.++...+.. ..+...+.. +.+++..+-...+.++.+.++.+....+...+.++|..+...-+.++.+
T Consensus 106 ~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~~~ai~~L~~~L~d~~~~VR~~A~~aLg~ 185 (280)
T PRK09687 106 CVRASAINATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVINDEAAIPLLINLLKDPNGDVRNWAAFALNS 185 (280)
T ss_pred HHHHHHHHHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCCHHHHHHHHHHhcCCCHHHHHHHHHHHhc
Confidence 6666666666555321 223343433 3346666667777777777765444444444445666666666666665
Q ss_pred cC-ChhHHHHHHc-cCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHhcCChhhHHH
Q 007519 179 AG-EVEEGYCLFR-RMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQN 256 (600)
Q Consensus 179 ~g-~~~~A~~~~~-~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 256 (600)
.+ +...+...+. .+..++..+-...+.++.+.|+ ..|+..+-...+. ++ .....+.++...|+. +|..
T Consensus 186 ~~~~~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~-~~av~~Li~~L~~------~~--~~~~a~~ALg~ig~~-~a~p 255 (280)
T PRK09687 186 NKYDNPDIREAFVAMLQDKNEEIRIEAIIGLALRKD-KRVLSVLIKELKK------GT--VGDLIIEAAGELGDK-TLLP 255 (280)
T ss_pred CCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHccCC-hhHHHHHHHHHcC------Cc--hHHHHHHHHHhcCCH-hHHH
Confidence 43 1334444433 3344666677777777777776 4555555555532 12 234566777777775 5666
Q ss_pred HhcccC--CCCchhHHHHHHHH
Q 007519 257 LFDTVP--VRDEISWTSMIDGY 276 (600)
Q Consensus 257 ~~~~~~--~~~~~~~~~l~~~~ 276 (600)
.+..+. .+|..+....+.++
T Consensus 256 ~L~~l~~~~~d~~v~~~a~~a~ 277 (280)
T PRK09687 256 VLDTLLYKFDDNEIITKAIDKL 277 (280)
T ss_pred HHHHHHhhCCChhHHHHHHHHH
Confidence 666554 34555555555444
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.0054 Score=44.15 Aligned_cols=59 Identities=19% Similarity=0.215 Sum_probs=30.1
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHhCC-----CC---CC-HHHHHHHHHHHhhhhCCHHHHHHHHHHHHh
Q 007519 471 HYVSMINLLGRAGKIKEAEEFVLRLP-----FE---PD-HRIWGALLGACGFCEGNAEIAEHAAKRLLE 530 (600)
Q Consensus 471 ~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~---p~-~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~ 530 (600)
+++.++..|...|++++|++.+++.. .. |+ ..++..+...+. ..|++++|++.++++++
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~-~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYY-RLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHH-HTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHh
Confidence 45555555666666666655554431 11 11 223444444555 66666666666666554
|
... |
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.0057 Score=44.03 Aligned_cols=60 Identities=15% Similarity=0.054 Sum_probs=48.2
Q ss_pred HHHHHHHHHHhhhhCCHHHHHHHHHHHHhh----CCC---CCCcHHHHhHHHHhhCCcHHHHHHHHHH
Q 007519 502 RIWGALLGACGFCEGNAEIAEHAAKRLLEL----DPL---NAPAHVVLCNIYAASGRHVEEHKLRMDM 562 (600)
Q Consensus 502 ~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~----~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 562 (600)
.+++.+...+. ..|++++|+..+++++++ .++ ...++..++.++...|++++|.++++..
T Consensus 6 ~~~~~la~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~a 72 (78)
T PF13424_consen 6 NAYNNLARVYR-ELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKA 72 (78)
T ss_dssp HHHHHHHHHHH-HTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 46777888888 999999999999999973 222 2467889999999999999999977654
|
... |
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.13 Score=41.16 Aligned_cols=50 Identities=14% Similarity=0.123 Sum_probs=25.1
Q ss_pred ccCchHHHHHHHHHHHhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHh
Q 007519 445 HAGLVSRGWELFNAMFDVYKIQP-GPEHYVSMINLLGRAGKIKEAEEFVLR 494 (600)
Q Consensus 445 ~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 494 (600)
+.|++++|.+.|+.+...+...| .......|+.+|.+.|++++|...+++
T Consensus 22 ~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~r 72 (142)
T PF13512_consen 22 QKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDR 72 (142)
T ss_pred HhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 44555555555555555433333 233444455555555555555555544
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.015 Score=48.04 Aligned_cols=68 Identities=28% Similarity=0.279 Sum_probs=51.1
Q ss_pred HHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCCcHHHHhHHHHhhCCcHHHHHHHHHHh-----hcCCccCC
Q 007519 503 IWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMG-----LKGVRKVP 571 (600)
Q Consensus 503 ~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~ 571 (600)
.+..++..+. ..|+++.|+..+++++..+|-+...|..++.+|...|+..+|.+.++.++ +-|+.|.|
T Consensus 64 ~~~~l~~~~~-~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~ 136 (146)
T PF03704_consen 64 ALERLAEALL-EAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSP 136 (146)
T ss_dssp HHHHHHHHHH-HTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----H
T ss_pred HHHHHHHHHH-hccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCH
Confidence 4445556666 88999999999999999999999999999999999999999999777664 35666654
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=96.09 E-value=2.3 Score=44.72 Aligned_cols=49 Identities=16% Similarity=0.272 Sum_probs=29.2
Q ss_pred hCCHHHHHHHHHHHHhh---CCCCCCcHH------HHhHHHHhhCCcHHHHHHHHHHh
Q 007519 515 EGNAEIAEHAAKRLLEL---DPLNAPAHV------VLCNIYAASGRHVEEHKLRMDMG 563 (600)
Q Consensus 515 ~g~~~~a~~~~~~~~~~---~p~~~~~~~------~l~~~~~~~g~~~~A~~~~~~~~ 563 (600)
.|+.++.......+..+ .|+...... .+...+...|+.++|..+..+..
T Consensus 547 ~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~ 604 (608)
T PF10345_consen 547 EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLD 604 (608)
T ss_pred cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 57776655555555442 233333222 34455777899999998776654
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.3 Score=47.31 Aligned_cols=110 Identities=14% Similarity=0.052 Sum_probs=54.4
Q ss_pred hHHHHHHHHHHHhhcCCCCC-cchHHHHHHHHhh---------cCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHhhhhC
Q 007519 449 VSRGWELFNAMFDVYKIQPG-PEHYVSMINLLGR---------AGKIKEAEEFVLRLP-FEP-DHRIWGALLGACGFCEG 516 (600)
Q Consensus 449 ~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~---------~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~g 516 (600)
.+.|..+|.++.....++|+ ...|..+..++.. .....+|.++.++.. ..| |+.....+..+.. ..|
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~-~~~ 352 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITG-LSG 352 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-hhc
Confidence 44555566666533344553 4444444433321 112334444444432 333 3333333333333 445
Q ss_pred CHHHHHHHHHHHHhhCCCCCCcHHHHhHHHHhhCCcHHHHHHH
Q 007519 517 NAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLR 559 (600)
Q Consensus 517 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 559 (600)
+.+.|...|+++..++|+.+.++...++.+.-.|+.++|.+..
T Consensus 353 ~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i 395 (458)
T PRK11906 353 QAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICI 395 (458)
T ss_pred chhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 5666666666666666666666666666666666666666633
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.023 Score=53.24 Aligned_cols=88 Identities=20% Similarity=-0.011 Sum_probs=67.8
Q ss_pred HHHHhhcCChHHHHHHHHhCC-----------------CCCCHHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCCc
Q 007519 476 INLLGRAGKIKEAEEFVLRLP-----------------FEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPA 538 (600)
Q Consensus 476 ~~~~~~~g~~~~A~~~~~~~~-----------------~~p~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 538 (600)
+..|.+.|++..|..-|+++. ......+++++..++. +.+++..|++...+.++++|+|...
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~l-Kl~~~~~Ai~~c~kvLe~~~~N~KA 293 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYL-KLKEYKEAIESCNKVLELDPNNVKA 293 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHH-hhhhHHHHHHHHHHHHhcCCCchhH
Confidence 344556666666665555531 1122445666777777 9999999999999999999999999
Q ss_pred HHHHhHHHHhhCCcHHHHHHHHHHhh
Q 007519 539 HVVLCNIYAASGRHVEEHKLRMDMGL 564 (600)
Q Consensus 539 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 564 (600)
...-+.+|...|+++.|+..++.+.+
T Consensus 294 LyRrG~A~l~~~e~~~A~~df~ka~k 319 (397)
T KOG0543|consen 294 LYRRGQALLALGEYDLARDDFQKALK 319 (397)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 99999999999999999997766554
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.99 E-value=2 Score=43.00 Aligned_cols=181 Identities=13% Similarity=0.072 Sum_probs=121.1
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHhcCCCC---ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHH
Q 007519 366 DLILENCLISMYAKCGVIDNAYNIFSNMVSR---DLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSA 442 (600)
Q Consensus 366 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 442 (600)
+...|...+..-.+.|+.+.+.-.|++..-| =...|-..+.-....|+.+-|..++....+-.++-.+.+-..-..-
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f 375 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF 375 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH
Confidence 4566777778888899999999999888743 2345666666666669888888888777665433333322222233
Q ss_pred hcccCchHHHHHHHHHHHhhcCCCCC-cchHHHHHHHHhhcCChHHHH---HHHHhCC-CCCCHHHHHHH----HH-HHh
Q 007519 443 CSHAGLVSRGWELFNAMFDVYKIQPG-PEHYVSMINLLGRAGKIKEAE---EFVLRLP-FEPDHRIWGAL----LG-ACG 512 (600)
Q Consensus 443 ~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~---~~~~~~~-~~p~~~~~~~l----~~-~~~ 512 (600)
+-..|+++.|..+++.+... . |+ ...-..-+....+.|..+.+. +++.... ..-+......+ .. .+.
T Consensus 376 ~e~~~n~~~A~~~lq~i~~e--~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~ 452 (577)
T KOG1258|consen 376 EESNGNFDDAKVILQRIESE--Y-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYK 452 (577)
T ss_pred HHhhccHHHHHHHHHHHHhh--C-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHH
Confidence 45678999999999999875 3 65 333333455567888888887 5554442 22222222222 22 123
Q ss_pred hhhCCHHHHHHHHHHHHhhCCCCCCcHHHHhHHHHhhC
Q 007519 513 FCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASG 550 (600)
Q Consensus 513 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 550 (600)
-.++.+.|..++.++.+..|++-..|..++......+
T Consensus 453 -i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 453 -IREDADLARIILLEANDILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred -HhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCC
Confidence 4588999999999999999988888888888877665
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.98 E-value=2.5 Score=44.05 Aligned_cols=54 Identities=9% Similarity=0.161 Sum_probs=41.9
Q ss_pred HHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 007519 372 CLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESML 425 (600)
Q Consensus 372 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 425 (600)
-++..+....+.+.+..+.+...+.++..|..++..+++.+..+...+...+..
T Consensus 710 dl~~~~~q~~d~E~~it~~~~~g~~~p~l~~~~L~yF~~~~~i~~~~~~v~~vl 763 (933)
T KOG2114|consen 710 DLMLYFQQISDPETVITLCERLGKEDPSLWLHALKYFVSEESIEDCYEIVYKVL 763 (933)
T ss_pred HHHHHHHHhhChHHHHHHHHHhCccChHHHHHHHHHHhhhcchhhHHHHHHHHH
Confidence 456667778888888888888888888899999999999887766665555443
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.042 Score=52.80 Aligned_cols=62 Identities=13% Similarity=0.150 Sum_probs=47.1
Q ss_pred ChhHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCCCc----chHHHHHHHHhhcCChHHHHHHHHhCC
Q 007519 432 NSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGP----EHYVSMINLLGRAGKIKEAEEFVLRLP 496 (600)
Q Consensus 432 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~ 496 (600)
+...++.+..+|...|++++|...|++.++ +.|+. ..|..++.+|...|+.++|++.+++..
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALe---L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrAL 139 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALE---LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTAL 139 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 345677777888888888888888888775 36653 347888888888888888888887764
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.4 Score=45.68 Aligned_cols=31 Identities=10% Similarity=0.079 Sum_probs=24.8
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 007519 397 DLVSWNSMVMGFSHHGLANETLKVFESMLES 427 (600)
Q Consensus 397 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 427 (600)
+-..+.+++.+..-.|++++|.+.+++|...
T Consensus 304 dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 304 DYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 4445667788888899999999999998875
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=95.76 E-value=1.7 Score=40.44 Aligned_cols=123 Identities=10% Similarity=0.027 Sum_probs=55.6
Q ss_pred hCC-ChhHHHHHHHHHHHC--------CCCCCh-----hHHHHHHHHHhcccchhh---hHHHHHHHhhhcCCCchhHHH
Q 007519 309 QNE-LFVEATYLFMEMRAH--------GVPPLN-----ATFSVLFGAAGATANIDL---GRQIHCVLMKTESESDLILEN 371 (600)
Q Consensus 309 ~~g-~~~~a~~~~~~m~~~--------g~~p~~-----~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~~~~~~~~~~ 371 (600)
..+ +++.|..++++..+. ...|+. .++..++.++...+..+. |..+++.+.+ .....+.++-
T Consensus 47 ~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~-e~~~~~~~~~ 125 (278)
T PF08631_consen 47 SKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLES-EYGNKPEVFL 125 (278)
T ss_pred HcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHH-hCCCCcHHHH
Confidence 344 666666666554332 122332 244455555555554433 3334333322 2222334444
Q ss_pred HHHHHHHhcCChHHHHHHHhcCCC-C--ChhhHHHHHHHH---HhcCChHHHHHHHHHHHHcCCCCCh
Q 007519 372 CLISMYAKCGVIDNAYNIFSNMVS-R--DLVSWNSMVMGF---SHHGLANETLKVFESMLESGTHPNS 433 (600)
Q Consensus 372 ~l~~~~~~~~~~~~A~~~~~~~~~-~--~~~~~~~l~~~~---~~~~~~~~a~~~~~~m~~~~~~p~~ 433 (600)
.-++.+.+.++.+.+.+++.+|.. . ....+..++..+ ... ....+...+..+....+.|..
T Consensus 126 L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~i~~l~~~-~~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 126 LKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHHIKQLAEK-SPELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred HHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHHHHHHHHhh-CcHHHHHHHHHHHHHHhCCCh
Confidence 445555556666666666666651 1 223344433333 222 233444555544444344443
|
It is also involved in sporulation []. |
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.28 Score=40.26 Aligned_cols=91 Identities=12% Similarity=0.103 Sum_probs=54.3
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCCCcchHHHHHHHHhhcCChH
Q 007519 407 GFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIK 486 (600)
Q Consensus 407 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 486 (600)
-+-..|++++|..+|+-+.-.+ .-+..-+..|..++-..+++++|...|..+... . .-|+..+-..+..|...|+.+
T Consensus 46 ~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l-~-~~dp~p~f~agqC~l~l~~~~ 122 (165)
T PRK15331 46 EFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTL-L-KNDYRPVFFTGQCQLLMRKAA 122 (165)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-c-cCCCCccchHHHHHHHhCCHH
Confidence 3456677777777777666532 223333444555556667777777777766542 1 124455555677777777777
Q ss_pred HHHHHHHhCCCCCC
Q 007519 487 EAEEFVLRLPFEPD 500 (600)
Q Consensus 487 ~A~~~~~~~~~~p~ 500 (600)
.|++.|......|.
T Consensus 123 ~A~~~f~~a~~~~~ 136 (165)
T PRK15331 123 KARQCFELVNERTE 136 (165)
T ss_pred HHHHHHHHHHhCcc
Confidence 77777766554444
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.59 E-value=0.2 Score=40.08 Aligned_cols=82 Identities=20% Similarity=0.127 Sum_probs=58.8
Q ss_pred cchHHHHHHHHhhcCChHHHHHHHHhCC----CCC-CHHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCCc-HH--
Q 007519 469 PEHYVSMINLLGRAGKIKEAEEFVLRLP----FEP-DHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPA-HV-- 540 (600)
Q Consensus 469 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p-~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~-~~-- 540 (600)
+..+..-+....+.|++++|.+.|+.+. ..| ....-..++.++. +.|+++.|+..+++.+++.|.++.+ |.
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy-~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y 88 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYY-KQGDYEEAIAAYDRFIRLHPTHPNVDYAYY 88 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHH-HccCHHHHHHHHHHHHHhCCCCCCccHHHH
Confidence 3344445566679999999999998874 223 2345566777888 9999999999999999999988754 33
Q ss_pred HHhHHHHhhCC
Q 007519 541 VLCNIYAASGR 551 (600)
Q Consensus 541 ~l~~~~~~~g~ 551 (600)
..+.++.+...
T Consensus 89 ~~gL~~~~~~~ 99 (142)
T PF13512_consen 89 MRGLSYYEQDE 99 (142)
T ss_pred HHHHHHHHHhh
Confidence 33444444443
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.58 E-value=0.72 Score=40.30 Aligned_cols=87 Identities=18% Similarity=0.097 Sum_probs=46.9
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHhCC-------CCCCH-HHHHHHHHHHhhhhCCHHHHHHHHHHHHh----hCCCCCCc
Q 007519 471 HYVSMINLLGRAGKIKEAEEFVLRLP-------FEPDH-RIWGALLGACGFCEGNAEIAEHAAKRLLE----LDPLNAPA 538 (600)
Q Consensus 471 ~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~p~~-~~~~~l~~~~~~~~g~~~~a~~~~~~~~~----~~p~~~~~ 538 (600)
.+..+...|++..++++|-..+.+-. .-|+. ..+...+-.+. ...|+..|...++.--. ..|++..+
T Consensus 152 l~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L-~~~Dyv~aekc~r~~~qip~f~~sed~r~ 230 (308)
T KOG1585|consen 152 LYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYL-YAHDYVQAEKCYRDCSQIPAFLKSEDSRS 230 (308)
T ss_pred HHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHh-hHHHHHHHHHHhcchhcCccccChHHHHH
Confidence 34445556667777777666554432 11221 12333333344 45677777777766444 34555666
Q ss_pred HHHHhHHHHhhCCcHHHHHHH
Q 007519 539 HVVLCNIYAASGRHVEEHKLR 559 (600)
Q Consensus 539 ~~~l~~~~~~~g~~~~A~~~~ 559 (600)
...|+.+| ..|+.+++..+.
T Consensus 231 lenLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 231 LENLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred HHHHHHHh-ccCCHHHHHHHH
Confidence 66666655 456666665543
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.094 Score=46.72 Aligned_cols=89 Identities=20% Similarity=0.223 Sum_probs=39.8
Q ss_pred ccCchHHHHHHHHHHHhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhC----CCCCCH-HHHHHHHHHHhhhhCCH
Q 007519 445 HAGLVSRGWELFNAMFDVYKIQP-GPEHYVSMINLLGRAGKIKEAEEFVLRL----PFEPDH-RIWGALLGACGFCEGNA 518 (600)
Q Consensus 445 ~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~~-~~~~~l~~~~~~~~g~~ 518 (600)
..|++..|...|...++.+.-.+ .+..+..|++.+...|++++|...|..+ +..|.. ..+.-+..+.. ..|+.
T Consensus 153 ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~-~l~~~ 231 (262)
T COG1729 153 KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLG-RLGNT 231 (262)
T ss_pred HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHH-HhcCH
Confidence 34445555555555554322111 2334444555555555555555554333 222222 22333333333 45555
Q ss_pred HHHHHHHHHHHhhCCC
Q 007519 519 EIAEHAAKRLLELDPL 534 (600)
Q Consensus 519 ~~a~~~~~~~~~~~p~ 534 (600)
++|...++++++..|+
T Consensus 232 d~A~atl~qv~k~YP~ 247 (262)
T COG1729 232 DEACATLQQVIKRYPG 247 (262)
T ss_pred HHHHHHHHHHHHHCCC
Confidence 5555555555555553
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.52 E-value=0.13 Score=39.78 Aligned_cols=82 Identities=20% Similarity=0.124 Sum_probs=38.2
Q ss_pred HHhhcCChHHHHHHHHhCC-CC-CCHHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCC----CcHHHHhHHHHhhCC
Q 007519 478 LLGRAGKIKEAEEFVLRLP-FE-PDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNA----PAHVVLCNIYAASGR 551 (600)
Q Consensus 478 ~~~~~g~~~~A~~~~~~~~-~~-p~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~----~~~~~l~~~~~~~g~ 551 (600)
++...|+.+.|++.|.+.. +. ...+.||.-..++. -+|+.++|+.-+++++++..+.. ..|..-+..|...|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~R-Lq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALR-LQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHH-HcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 3444555555555554432 22 23444555555555 55555555555555555432221 223344444555555
Q ss_pred cHHHHHHHH
Q 007519 552 HVEEHKLRM 560 (600)
Q Consensus 552 ~~~A~~~~~ 560 (600)
-+.|..=|+
T Consensus 131 dd~AR~DFe 139 (175)
T KOG4555|consen 131 DDAARADFE 139 (175)
T ss_pred hHHHHHhHH
Confidence 555554333
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.11 Score=42.89 Aligned_cols=55 Identities=11% Similarity=0.199 Sum_probs=25.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccCchHHHHHHHHHH
Q 007519 404 MVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAM 459 (600)
Q Consensus 404 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 459 (600)
++..+...|++++|..+++.+.... +-+...+..++.++...|+...|.+.|+++
T Consensus 68 l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~ 122 (146)
T PF03704_consen 68 LAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERY 122 (146)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 3344444555555555555554431 334444555555555555555555554443
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=95.46 E-value=0.15 Score=40.32 Aligned_cols=48 Identities=21% Similarity=0.375 Sum_probs=24.3
Q ss_pred CCCCCcchHHHHHHHHhhcCChHHHHHHHHhC----CCCCCHHHHHHHHHHH
Q 007519 464 KIQPGPEHYVSMINLLGRAGKIKEAEEFVLRL----PFEPDHRIWGALLGAC 511 (600)
Q Consensus 464 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~~~~~~~l~~~~ 511 (600)
...|+..+..+++.+|+..|++..|+++++.. +++-+...|..++..+
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 34455555555555555555555555555443 2333345555555543
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.41 E-value=0.95 Score=38.81 Aligned_cols=163 Identities=17% Similarity=0.113 Sum_probs=95.1
Q ss_pred CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCCCcchHH
Q 007519 395 SRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPN-SVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYV 473 (600)
Q Consensus 395 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~ 473 (600)
+.-+.+||-+.--+...|+++.|.+.|+...+. .|. ..+...-.-++...|++..|.+-+...-+...-+|-...|.
T Consensus 96 P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~EL--Dp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWL 173 (297)
T COG4785 96 PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL--DPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWL 173 (297)
T ss_pred CCcHHHHHHHHHHHHhcccchHHHHHhhhHhcc--CCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHH
Confidence 344678888888899999999999999998875 333 22222222334567888888876665544322222222232
Q ss_pred HHHHHHhhcCChHHHHHHH-HhCCCCCCHHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCC-------CCcHHHHhHH
Q 007519 474 SMINLLGRAGKIKEAEEFV-LRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLN-------APAHVVLCNI 545 (600)
Q Consensus 474 ~l~~~~~~~g~~~~A~~~~-~~~~~~p~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~-------~~~~~~l~~~ 545 (600)
.+. ...-+..+|..-+ ++.. ..+..-|...+..+. .|.+. -+.+++++.+...++ ..+|..|+.-
T Consensus 174 Yl~---E~k~dP~~A~tnL~qR~~-~~d~e~WG~~iV~~y--LgkiS-~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~ 246 (297)
T COG4785 174 YLN---EQKLDPKQAKTNLKQRAE-KSDKEQWGWNIVEFY--LGKIS-EETLMERLKADATDNTSLAEHLTETYFYLGKY 246 (297)
T ss_pred HHH---HhhCCHHHHHHHHHHHHH-hccHhhhhHHHHHHH--Hhhcc-HHHHHHHHHhhccchHHHHHHHHHHHHHHHHH
Confidence 222 2334667776554 3333 334444444443332 23321 123344444433322 3678889999
Q ss_pred HHhhCCcHHHHHHHHHHhhcC
Q 007519 546 YAASGRHVEEHKLRMDMGLKG 566 (600)
Q Consensus 546 ~~~~g~~~~A~~~~~~~~~~~ 566 (600)
+...|+.++|..+++.....+
T Consensus 247 ~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 247 YLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred HhccccHHHHHHHHHHHHHHh
Confidence 999999999999887665443
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=95.35 E-value=0.038 Score=31.88 Aligned_cols=32 Identities=34% Similarity=0.199 Sum_probs=25.9
Q ss_pred HHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCC
Q 007519 502 RIWGALLGACGFCEGNAEIAEHAAKRLLELDPL 534 (600)
Q Consensus 502 ~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~ 534 (600)
.+|..+...+. ..|++++|+..++++++++|+
T Consensus 2 ~~~~~~g~~~~-~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYF-QLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHH-HTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHH-HhCCchHHHHHHHHHHHHCcC
Confidence 45677777788 899999999999999999985
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=95.31 E-value=0.056 Score=31.09 Aligned_cols=32 Identities=41% Similarity=0.320 Sum_probs=24.6
Q ss_pred HHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCC
Q 007519 503 IWGALLGACGFCEGNAEIAEHAAKRLLELDPLN 535 (600)
Q Consensus 503 ~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~ 535 (600)
.|..+...+. ..|++++|++.++++++++|+|
T Consensus 3 ~~~~lg~~~~-~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 3 AWYYLGQAYY-QLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHH-HTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHH-HhCCHHHHHHHHHHHHHHCcCC
Confidence 4556666677 8899999999999999998854
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=95.30 E-value=3 Score=40.40 Aligned_cols=150 Identities=9% Similarity=0.003 Sum_probs=80.5
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC---ChhHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCC--Ccc
Q 007519 396 RDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHP---NSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQP--GPE 470 (600)
Q Consensus 396 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p--~~~ 470 (600)
....+|..++..+.+.|+++.|...+..+...+..+ .+.....-.......|+..+|...++..... .+.. +..
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~-~~~~~~~~~ 222 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC-RLSKNIDSI 222 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH-Hhhhccccc
Confidence 345567777888888888888888888877643221 2233333445556677788888877777652 1111 111
Q ss_pred hHHHHHHHHhhcCChHHHHHH-HHhCCCCCCHHHHHHHHHHHhhhh------CCHHHHHHHHHHHHhhCCCCCCcHHHHh
Q 007519 471 HYVSMINLLGRAGKIKEAEEF-VLRLPFEPDHRIWGALLGACGFCE------GNAEIAEHAAKRLLELDPLNAPAHVVLC 543 (600)
Q Consensus 471 ~~~~l~~~~~~~g~~~~A~~~-~~~~~~~p~~~~~~~l~~~~~~~~------g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 543 (600)
....+...+.. ..+..... ........-...+..+...+. .. ++.+++...|+++.++.|.....+..++
T Consensus 223 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a 299 (352)
T PF02259_consen 223 SNAELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLD-ELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWA 299 (352)
T ss_pred cHHHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHH-hhccccccccHHHHHHHHHHHHHhChhHHHHHHHHH
Confidence 11111111100 00000000 000000001122223333333 33 7888999999999999998888888888
Q ss_pred HHHHhh
Q 007519 544 NIYAAS 549 (600)
Q Consensus 544 ~~~~~~ 549 (600)
..+.+.
T Consensus 300 ~~~~~~ 305 (352)
T PF02259_consen 300 LFNDKL 305 (352)
T ss_pred HHHHHH
Confidence 877654
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=95.30 E-value=0.18 Score=46.45 Aligned_cols=124 Identities=13% Similarity=0.083 Sum_probs=72.6
Q ss_pred HHHHHhcccCchHHHHHHHHHHHhhcCC--CC--CcchHHHHHHHHhhcCChHHHHHHHHhC-------CCCCCH-----
Q 007519 438 GILSACSHAGLVSRGWELFNAMFDVYKI--QP--GPEHYVSMINLLGRAGKIKEAEEFVLRL-------PFEPDH----- 501 (600)
Q Consensus 438 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~~----- 501 (600)
.+..++...+.++++++.|+.+.+--.- +| ...++..|...|.+..++++|.-+..+. .+..-.
T Consensus 127 ~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~ 206 (518)
T KOG1941|consen 127 SMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRA 206 (518)
T ss_pred hHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHH
Confidence 3445566666777777777776542111 11 2456777888888888888776554443 211111
Q ss_pred HHHHHHHHHHhhhhCCHHHHHHHHHHHHhh--CCCCC----CcHHHHhHHHHhhCCcHHHHH-HHHHH
Q 007519 502 RIWGALLGACGFCEGNAEIAEHAAKRLLEL--DPLNA----PAHVVLCNIYAASGRHVEEHK-LRMDM 562 (600)
Q Consensus 502 ~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~--~p~~~----~~~~~l~~~~~~~g~~~~A~~-~~~~~ 562 (600)
.....+..++. ..|....|.+..+++.++ .-.|. .....++++|...|+.+.|+. +-+.|
T Consensus 207 ~~lyhmaValR-~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 207 MSLYHMAVALR-LLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHH-HhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 12222334455 777777777777777662 22233 334467777888888888877 44443
|
|
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=95.25 E-value=4.8 Score=42.35 Aligned_cols=321 Identities=9% Similarity=-0.035 Sum_probs=154.1
Q ss_pred HHhcCChhHHHHHHccCCCCCcchHHHHHHHHHh--cCChhHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHhcCChhh
Q 007519 176 YCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAW--NGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEE 253 (600)
Q Consensus 176 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 253 (600)
..+.|++..+.++...+.......|......... ....++....+++-- +.+.....-...+..+.+.+++..
T Consensus 43 a~~~g~~~~~~~~~~~l~d~pL~~yl~y~~L~~~l~~~~~~ev~~Fl~~~~-----~~P~~~~Lr~~~l~~La~~~~w~~ 117 (644)
T PRK11619 43 AWDNRQMDVVEQLMPTLKDYPLYPYLEYRQLTQDLMNQPAVQVTNFIRANP-----TLPPARSLQSRFVNELARREDWRG 117 (644)
T ss_pred HHHCCCHHHHHHHHHhccCCCcHhHHHHHHHHhccccCCHHHHHHHHHHCC-----CCchHHHHHHHHHHHHHHccCHHH
Confidence 4566788888777777754434433333222222 223444444443322 112222223334455566777777
Q ss_pred HHHHhcccCCCCchhHHHHHHHHHhcCChHHHHHHHhhCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChh
Q 007519 254 AQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNA 333 (600)
Q Consensus 254 a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 333 (600)
....+.. .+.+.........+....|+.++|......+-.. ..-..+..-.+|+...+.|...+..
T Consensus 118 ~~~~~~~-~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~-------------g~~~p~~cd~l~~~~~~~g~lt~~d 183 (644)
T PRK11619 118 LLAFSPE-KPKPVEARCNYYYAKWATGQQQEAWQGAKELWLT-------------GKSLPNACDKLFSVWQQSGKQDPLA 183 (644)
T ss_pred HHHhcCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc-------------CCCCChHHHHHHHHHHHcCCCCHHH
Confidence 7774422 2455555566667777777766665444433110 0011233333444444333222222
Q ss_pred HHHHHHHHHhcccchhhhHHHHHHHhhhcCCCc-hhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHH--Hh
Q 007519 334 TFSVLFGAAGATANIDLGRQIHCVLMKTESESD-LILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGF--SH 410 (600)
Q Consensus 334 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~--~~ 410 (600)
.+.- +......|+...|..+...+. ++ ......++..+. +...+...+.... ++...-..++.++ ..
T Consensus 184 ~w~R-~~~al~~~~~~lA~~l~~~l~-----~~~~~~a~a~~al~~---~p~~~~~~~~~~~-~~~~~~~~~~~~l~Rla 253 (644)
T PRK11619 184 YLER-IRLAMKAGNTGLVTYLAKQLP-----ADYQTIASALIKLQN---DPNTVETFARTTG-PTDFTRQMAAVAFASVA 253 (644)
T ss_pred HHHH-HHHHHHCCCHHHHHHHHHhcC-----hhHHHHHHHHHHHHH---CHHHHHHHhhccC-CChhhHHHHHHHHHHHH
Confidence 2222 222334455555555554431 11 112233333333 3334443333321 2221111111122 23
Q ss_pred cCChHHHHHHHHHHHHcC-CCCChh--HHHHHHHHhcccCchHHHHHHHHHHHhhcCCCCCcchHHHHHHHHhhcCChHH
Q 007519 411 HGLANETLKVFESMLESG-THPNSV--TFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKE 487 (600)
Q Consensus 411 ~~~~~~a~~~~~~m~~~~-~~p~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 487 (600)
..+.+.|..++....... ..+... ....+.......+..+++...+...... ..+......-+..-.+.++++.
T Consensus 254 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~---~~~~~~~e~r~r~Al~~~dw~~ 330 (644)
T PRK11619 254 RQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMR---SQSTSLLERRVRMALGTGDRRG 330 (644)
T ss_pred HhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccc---cCCcHHHHHHHHHHHHccCHHH
Confidence 455688888888775432 333222 2233332223322255666666654321 2244455555666668888888
Q ss_pred HHHHHHhCC--CCCCHHHHHHHHHHHhhhhCCHHHHHHHHHHHH
Q 007519 488 AEEFVLRLP--FEPDHRIWGALLGACGFCEGNAEIAEHAAKRLL 529 (600)
Q Consensus 488 A~~~~~~~~--~~p~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~ 529 (600)
+...+..|+ ..-...-.-.+..+.. ..|+.++|...|+++.
T Consensus 331 ~~~~i~~L~~~~~~~~rw~YW~aRa~~-~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 331 LNTWLARLPMEAKEKDEWRYWQADLLL-EQGRKAEAEEILRQLM 373 (644)
T ss_pred HHHHHHhcCHhhccCHhhHHHHHHHHH-HcCCHHHHHHHHHHHh
Confidence 888888886 2222333344555656 6788899988888874
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.24 E-value=3.8 Score=41.12 Aligned_cols=398 Identities=12% Similarity=0.094 Sum_probs=187.9
Q ss_pred HHHHhccCCC--CCcchHHHHHHHHHcCCChhHHHHHhhhcCC--CChh-hHHHHHHHHHhcCChHHHHHHhhcCCC---
Q 007519 30 AKALFQLMPQ--RNVVSYNAMLSGFLQNGRLSEARRLFEEMPE--RNVV-SWTAMICGLADAGRVCEARKLFEEMPE--- 101 (600)
Q Consensus 30 A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~--- 101 (600)
-.+.++.... -+-..++.++.---.....+.+...+..++. |-.+ -|......=.+-|..+.+.++|++...
T Consensus 31 ~~~~we~~~~~~~~f~~wt~li~~~~~~~~~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip 110 (577)
T KOG1258|consen 31 SLDYWEILSNDSLDFDAWTTLIQENDSIEDVDALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIP 110 (577)
T ss_pred hhhHhhccccchhcccchHHHHhccCchhHHHHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhh
Confidence 3444444433 3444566666554444555666777777664 4443 345555555677888888888887765
Q ss_pred CCceeHHHHHHHHH-HCCChhHHHHHhhcCCC------CCcccHHHHHHHHHhcCCHhHHHHHHHhcccCCchhHHHHHH
Q 007519 102 RNVVSWNSMVVGLI-RNGELNEARKVFNSMPI------KNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMIS 174 (600)
Q Consensus 102 ~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~ 174 (600)
.+...|......+. ..|+.+...+.|++.+. .+...|...|..-...+++.....+++..++-....++....
T Consensus 111 ~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f~ 190 (577)
T KOG1258|consen 111 LSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHFD 190 (577)
T ss_pred hHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHHH
Confidence 34445554444333 45777777777777765 344566677777677777888888888777644444444443
Q ss_pred HHHhc---------CChhHHHHHHccCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhhhcCCCCCCh--hhHHHHHH
Q 007519 175 GYCRA---------GEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNV--QSCNSMIN 243 (600)
Q Consensus 175 ~~~~~---------g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~~~~l~~ 243 (600)
.|.+. ...+.+.++-........ ....++..+-.+ ..+... +.+.+. ..-+.+..
T Consensus 191 ~f~~~l~~~~~~~l~~~d~~~~l~~~~~~~~~---------~~~~~~~~e~~~--~~v~~~---~~~s~~l~~~~~~l~~ 256 (577)
T KOG1258|consen 191 RFKQLLNQNEEKILLSIDELIQLRSDVAERSK---------ITHSQEPLEELE--IGVKDS---TDPSKSLTEEKTILKR 256 (577)
T ss_pred HHHHHHhcCChhhhcCHHHHHHHhhhHHhhhh---------cccccChhHHHH--HHHhhc---cCccchhhHHHHHHHH
Confidence 33221 111222111111100000 000000000000 000000 000000 00001111
Q ss_pred H-------HHhcCChhhHHHHhcccC-----------CCCchhHHHHHHHHHhcCChHHHHHHHhhCCCC---ChhhHHH
Q 007519 244 G-------YIRFGRLEEAQNLFDTVP-----------VRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDR---DAVAWTA 302 (600)
Q Consensus 244 ~-------~~~~~~~~~a~~~~~~~~-----------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~ 302 (600)
. +...-........++... +.+..+|..-+.--...|+++.+.-+|+...-| =...|-.
T Consensus 257 ~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWik 336 (577)
T KOG1258|consen 257 IVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIK 336 (577)
T ss_pred HHHHHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHH
Confidence 1 111111111122222221 123345666666666677777777776665442 1234444
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHH-HHhcccchhhhHHHHHHHhhhcCCCchhHHHHHHHHHHhcC
Q 007519 303 MISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFG-AAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCG 381 (600)
Q Consensus 303 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 381 (600)
.+.-....|+.+-|-.++....+-- .|+......+-. .+-..|+...|..+++.+...- +.-..+-..-+....+.|
T Consensus 337 y~~~m~~~~~~~~~~~~~~~~~~i~-~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~-pg~v~~~l~~~~~e~r~~ 414 (577)
T KOG1258|consen 337 YARWMESSGDVSLANNVLARACKIH-VKKTPIIHLLEARFEESNGNFDDAKVILQRIESEY-PGLVEVVLRKINWERRKG 414 (577)
T ss_pred HHHHHHHcCchhHHHHHHHhhhhhc-CCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhC-CchhhhHHHHHhHHHHhc
Confidence 4444445577776666665554432 222222222222 2334567777777777666554 212222223334445566
Q ss_pred ChHHHH---HHHhcCC--CCChhhHHHHHHH-----HHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhc
Q 007519 382 VIDNAY---NIFSNMV--SRDLVSWNSMVMG-----FSHHGLANETLKVFESMLESGTHPNSVTFLGILSACS 444 (600)
Q Consensus 382 ~~~~A~---~~~~~~~--~~~~~~~~~l~~~-----~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~ 444 (600)
+.+.+. +++.... ..+....+.+.-- +.-.++.+.|..++.++.+. ++++...|..++..+.
T Consensus 415 ~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~ 486 (577)
T KOG1258|consen 415 NLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIREDADLARIILLEANDI-LPDCKVLYLELIRFEL 486 (577)
T ss_pred chhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHH
Confidence 666665 3333332 1222222222221 23356677777777777664 4555555555554443
|
|
| >PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=95.24 E-value=6.2 Score=43.77 Aligned_cols=253 Identities=9% Similarity=-0.008 Sum_probs=143.8
Q ss_pred HHhhhcCCCChhhHHHHHHHHHhcCChHHHHHHhhcCCCCCceeHHHHHHHHHHCCChh-HHHHHhhcCCCCCcccHHHH
Q 007519 63 RLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELN-EARKVFNSMPIKNVISWNAM 141 (600)
Q Consensus 63 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~~~~~~~~~~l 141 (600)
.+.+.+..+|+.+-..-+..+.+.+..+....+.+.+..+|.......+.++.+.++.. ....+...+..+|+..-...
T Consensus 625 ~L~~~L~D~d~~VR~~Av~~L~~~~~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~~d~~VR~~A 704 (897)
T PRK13800 625 ELAPYLADPDPGVRRTAVAVLTETTPPGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPPAPALRDHLGSPDPVVRAAA 704 (897)
T ss_pred HHHHHhcCCCHHHHHHHHHHHhhhcchhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCchHHHHHHhcCCCHHHHHHH
Confidence 44444455777777777777777666443333444444466655555555555443221 11122222333566666666
Q ss_pred HHHHHhcCCHhHHHHHHHhcccCCchhHHHHHHHHHhcCChhHHHHHHccCCCCCcchHHHHHHHHHhcCChhH-HHHHH
Q 007519 142 IAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKE-SLLLF 220 (600)
Q Consensus 142 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~-a~~~~ 220 (600)
+.++...+.. ....++..+..+|..+-...+.++.+.+..+. +...+..++...-...+.++...+..+. +...+
T Consensus 705 ~~aL~~~~~~-~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~---l~~~l~D~~~~VR~~aa~aL~~~~~~~~~~~~~L 780 (897)
T PRK13800 705 LDVLRALRAG-DAALFAAALGDPDHRVRIEAVRALVSVDDVES---VAGAATDENREVRIAVAKGLATLGAGGAPAGDAV 780 (897)
T ss_pred HHHHHhhccC-CHHHHHHHhcCCCHHHHHHHHHHHhcccCcHH---HHHHhcCCCHHHHHHHHHHHHHhccccchhHHHH
Confidence 6666554321 12334455556777666666777666554432 2333445666666666677776665443 34555
Q ss_pred HHHHhhhcCCCCCChhhHHHHHHHHHhcCChhhHH-HHhcccCCCCchhHHHHHHHHHhcCChHHHHHHHhhCCCCChhh
Q 007519 221 IEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQ-NLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVA 299 (600)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 299 (600)
..+.. .+|...-...+.++...+..+.+. .+...+..++..+-...+.++...+..+....+...+.+++...
T Consensus 781 ~~ll~------D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~~~a~~~L~~~L~D~~~~V 854 (897)
T PRK13800 781 RALTG------DPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAADVAVPALVEALTDPHLDV 854 (897)
T ss_pred HHHhc------CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccccchHHHHHHHhcCCCHHH
Confidence 55543 456666677777777777655443 23344445666677777777777776544444455555677777
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHH
Q 007519 300 WTAMISGLVQNELFVEATYLFMEMRA 325 (600)
Q Consensus 300 ~~~li~~~~~~g~~~~a~~~~~~m~~ 325 (600)
-...+.++.+.+....+...+....+
T Consensus 855 R~~A~~aL~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 855 RKAAVLALTRWPGDPAARDALTTALT 880 (897)
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHh
Confidence 77777777775444566667766665
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.21 E-value=2.2 Score=38.19 Aligned_cols=218 Identities=19% Similarity=0.140 Sum_probs=94.5
Q ss_pred CChhHHHHHHHHHHHCCCCC-ChhHHHHHHHHHhcccchhhhHHHHHHHhhh-cCCCchhHHHHHHHHHHhcCChHHHHH
Q 007519 311 ELFVEATYLFMEMRAHGVPP-LNATFSVLFGAAGATANIDLGRQIHCVLMKT-ESESDLILENCLISMYAKCGVIDNAYN 388 (600)
Q Consensus 311 g~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~ 388 (600)
+....+...+.......... ....+......+...+....+...+...... ........+......+...+++..+..
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 34444445554444432111 2344444444555555555555555544432 222233333444444445555555555
Q ss_pred HHhcCCC--CCh-hhHHHHHH-HHHhcCChHHHHHHHHHHHHcCCCC----ChhHHHHHHHHhcccCchHHHHHHHHHHH
Q 007519 389 IFSNMVS--RDL-VSWNSMVM-GFSHHGLANETLKVFESMLESGTHP----NSVTFLGILSACSHAGLVSRGWELFNAMF 460 (600)
Q Consensus 389 ~~~~~~~--~~~-~~~~~l~~-~~~~~~~~~~a~~~~~~m~~~~~~p----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 460 (600)
.+..... ++. ........ .+...|+++.|...+.+... ..| ....+......+...++.+.+...+....
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 194 (291)
T COG0457 117 LLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALE--LDPELNELAEALLALGALLEALGRYEEALELLEKAL 194 (291)
T ss_pred HHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHH
Confidence 5554442 111 11222222 45555555555555555533 122 11222222222344455555555555554
Q ss_pred hhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhCC-CCCC-HHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCC
Q 007519 461 DVYKIQP-GPEHYVSMINLLGRAGKIKEAEEFVLRLP-FEPD-HRIWGALLGACGFCEGNAEIAEHAAKRLLELDP 533 (600)
Q Consensus 461 ~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p 533 (600)
.. ... ....+..+...+...++++.|...+.... ..|+ ...+......+. ..+..+.+...+.+.....|
T Consensus 195 ~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 267 (291)
T COG0457 195 KL--NPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLL-ELGRYEEALEALEKALELDP 267 (291)
T ss_pred hh--CcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHH-HcCCHHHHHHHHHHHHHhCc
Confidence 32 111 23444445555555555555555554442 2222 223333333333 44455555555555555555
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=95.20 E-value=0.33 Score=44.85 Aligned_cols=120 Identities=13% Similarity=0.129 Sum_probs=66.5
Q ss_pred HHhcccchhhhHHHHHHHhhhcC-----CCchhHHHHHHHHHHhcCChHHHHHHHhcCC-------CCCh------hhHH
Q 007519 341 AAGATANIDLGRQIHCVLMKTES-----ESDLILENCLISMYAKCGVIDNAYNIFSNMV-------SRDL------VSWN 402 (600)
Q Consensus 341 ~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-------~~~~------~~~~ 402 (600)
++...+.++++.+.|+.+.+-.. -....++..|...|....|+++|.-+..+.. -.|. .+.-
T Consensus 131 Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~ly 210 (518)
T KOG1941|consen 131 AHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLY 210 (518)
T ss_pred HhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHH
Confidence 44444445555555543333211 1134456667777777777776655444332 1222 1223
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHH----cCCCCCh-hHHHHHHHHhcccCchHHHHHHHHHHH
Q 007519 403 SMVMGFSHHGLANETLKVFESMLE----SGTHPNS-VTFLGILSACSHAGLVSRGWELFNAMF 460 (600)
Q Consensus 403 ~l~~~~~~~~~~~~a~~~~~~m~~----~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~ 460 (600)
.|.-++...|+.-.|.+.-++..+ .|-+|.. .....+.+.|-..|+.+.|+.-|+.+.
T Consensus 211 hmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 211 HMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 344566677777777777666543 3433322 345566677888889888888777665
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=95.20 E-value=0.78 Score=46.14 Aligned_cols=118 Identities=21% Similarity=0.205 Sum_probs=73.9
Q ss_pred cCChHHHHHHHHHHHHcCCCCChhHHHHHH-HHhcccCchHHHHHHHHHHHhhc-CCCC-CcchHHHHHHHHhhcCChHH
Q 007519 411 HGLANETLKVFESMLESGTHPNSVTFLGIL-SACSHAGLVSRGWELFNAMFDVY-KIQP-GPEHYVSMINLLGRAGKIKE 487 (600)
Q Consensus 411 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~-~~~~~~g~~~~a~~~~~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~ 487 (600)
..+.+.|.+++..+.+. -|+...|...- +.+...|++++|.+.|+++.... .++. ....+--++..+.-.++|++
T Consensus 246 ~~~~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~ 323 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEE 323 (468)
T ss_pred CCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHH
Confidence 34566777888877764 56666555443 45566788888888888655311 1111 23345556677778888888
Q ss_pred HHHHHHhCC--CCCCHHHHHHHHHHHhhhhCCH-------HHHHHHHHHHHh
Q 007519 488 AEEFVLRLP--FEPDHRIWGALLGACGFCEGNA-------EIAEHAAKRLLE 530 (600)
Q Consensus 488 A~~~~~~~~--~~p~~~~~~~l~~~~~~~~g~~-------~~a~~~~~~~~~ 530 (600)
|.+.+.++. ..-....|..+.++|....|+. ++|..+++++-.
T Consensus 324 A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 324 AAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 888887775 2334555666666665566766 666666666544
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.20 E-value=0.32 Score=43.49 Aligned_cols=57 Identities=19% Similarity=0.247 Sum_probs=26.7
Q ss_pred HHHHhcccCchHHHHHHHHHHHhhcCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhC
Q 007519 439 ILSACSHAGLVSRGWELFNAMFDVYKIQPG-PEHYVSMINLLGRAGKIKEAEEFVLRL 495 (600)
Q Consensus 439 l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 495 (600)
|..++...|+++.|..+|..+.+.++-.|. +..+.-|+....+.|+.++|...|+++
T Consensus 184 LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv 241 (262)
T COG1729 184 LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQV 241 (262)
T ss_pred HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 444444455555555555544444333332 344444444445555555555444443
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.14 E-value=0.66 Score=42.49 Aligned_cols=45 Identities=13% Similarity=0.108 Sum_probs=19.3
Q ss_pred CChHHHHHHHhcCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 007519 381 GVIDNAYNIFSNMV---SRDLVSWNSMVMGFSHHGLANETLKVFESML 425 (600)
Q Consensus 381 ~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 425 (600)
|+..+|-..++++. +.|...++..-.+|.-.|+.+.-...+++..
T Consensus 117 g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIi 164 (491)
T KOG2610|consen 117 GKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKII 164 (491)
T ss_pred ccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhc
Confidence 34444444444433 3344444444444444444444444444443
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.05 E-value=1.8 Score=39.32 Aligned_cols=175 Identities=18% Similarity=0.110 Sum_probs=101.3
Q ss_pred HHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccCchHHHHHHHHHHHhhcC
Q 007519 385 NAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYK 464 (600)
Q Consensus 385 ~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 464 (600)
...+++++..++....--.-.......|++.+|..+|....... +-+......+..++...|+.+.|..++..+-.. .
T Consensus 121 qlr~~ld~~~~~~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~-~ 198 (304)
T COG3118 121 QLRQFLDKVLPAEEEEALAEAKELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQ-A 198 (304)
T ss_pred HHHHHHHHhcChHHHHHHHHhhhhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCccc-c
Confidence 44445555544422222222344567788888888888877652 333455556677888888888888888765432 0
Q ss_pred CCCCcchHHHHHHHHhhcCChHHHHHHHHhCCCCC-CHHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhC--CCCCCcHHH
Q 007519 465 IQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEP-DHRIWGALLGACGFCEGNAEIAEHAAKRLLELD--PLNAPAHVV 541 (600)
Q Consensus 465 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~--p~~~~~~~~ 541 (600)
-.........-+..+.+.....+...+-.+.-..| |...-..+...+. ..|+.+.|...+-.+++.+ -.+...-..
T Consensus 199 ~~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~-~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~ 277 (304)
T COG3118 199 QDKAAHGLQAQIELLEQAAATPEIQDLQRRLAADPDDVEAALALADQLH-LVGRNEAALEHLLALLRRDRGFEDGEARKT 277 (304)
T ss_pred hhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhcccccCcHHHHH
Confidence 01111122233455555555555555555554455 4444455555666 7788888887777777643 335666777
Q ss_pred HhHHHHhhCCcHHHHH-HHHHH
Q 007519 542 LCNIYAASGRHVEEHK-LRMDM 562 (600)
Q Consensus 542 l~~~~~~~g~~~~A~~-~~~~~ 562 (600)
++..+.-.|..+.+.. +++.|
T Consensus 278 lle~f~~~g~~Dp~~~~~RRkL 299 (304)
T COG3118 278 LLELFEAFGPADPLVLAYRRKL 299 (304)
T ss_pred HHHHHHhcCCCCHHHHHHHHHH
Confidence 7777777775554433 44443
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=94.98 E-value=6.9 Score=42.75 Aligned_cols=117 Identities=15% Similarity=0.128 Sum_probs=68.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccCch
Q 007519 370 ENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLV 449 (600)
Q Consensus 370 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~ 449 (600)
|.-.++...+.|-+.+|+.++.--.+.-...|.+....+...+.+++|.-.|+..-+ ..-.+.+|...|++
T Consensus 911 ~~e~~n~I~kh~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dW 981 (1265)
T KOG1920|consen 911 FPECKNYIKKHGLYDEALALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDW 981 (1265)
T ss_pred cHHHHHHHHhcccchhhhheeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccH
Confidence 344455555666666666655443333334555555556666777777666665422 12345666777888
Q ss_pred HHHHHHHHHHHhhcCCCCC--cchHHHHHHHHhhcCChHHHHHHHHhCCCCC
Q 007519 450 SRGWELFNAMFDVYKIQPG--PEHYVSMINLLGRAGKIKEAEEFVLRLPFEP 499 (600)
Q Consensus 450 ~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p 499 (600)
.+|..+..++.. .-+ ..+-..|+.-+...+++-+|.++..+....|
T Consensus 982 r~~l~~a~ql~~----~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd~ 1029 (1265)
T KOG1920|consen 982 REALSLAAQLSE----GKDELVILAEELVSRLVEQRKHYEAAKILLEYLSDP 1029 (1265)
T ss_pred HHHHHHHHhhcC----CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcCH
Confidence 888777665532 112 1122567777778888888888877765443
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=94.98 E-value=1.4 Score=43.76 Aligned_cols=70 Identities=16% Similarity=0.213 Sum_probs=30.6
Q ss_pred HhcCChhhHHHHhcccCCCCchhHHHHHHHHHhcCChHHHHHHHhhCCCCChhhHHHHHHHHHhCCChhHHHHHHHH
Q 007519 246 IRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFME 322 (600)
Q Consensus 246 ~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 322 (600)
.+.|+++.|.++.++.. ++..|..|.+...+.|+++-|++.|.+..+ +..|+-.|.-.|+.+...++.+.
T Consensus 329 l~lg~L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d-----~~~L~lLy~~~g~~~~L~kl~~~ 398 (443)
T PF04053_consen 329 LQLGNLDIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD-----FSGLLLLYSSTGDREKLSKLAKI 398 (443)
T ss_dssp HHCT-HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT------HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC-----ccccHHHHHHhCCHHHHHHHHHH
Confidence 44555555555544443 333455555555555555555555444432 33333344444444443333333
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=94.86 E-value=1.8 Score=42.98 Aligned_cols=157 Identities=12% Similarity=0.087 Sum_probs=98.7
Q ss_pred HHhcCChhHHHHHHH--HHHhhhcCCCCCChhhHHHHHHHHHhcCChhhHHHHhcccCCCCchhHHHHHHHHHhcCChHH
Q 007519 207 FAWNGFHKESLLLFI--EMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSN 284 (600)
Q Consensus 207 ~~~~~~~~~a~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 284 (600)
..-.++++.+.+..+ ++.. .+ | ..-.+.+++.+.+.|-.+.|+++... + ..-.+...+.|+++.
T Consensus 271 av~~~d~~~v~~~i~~~~ll~----~i-~-~~~~~~i~~fL~~~G~~e~AL~~~~D-----~---~~rFeLAl~lg~L~~ 336 (443)
T PF04053_consen 271 AVLRGDFEEVLRMIAASNLLP----NI-P-KDQGQSIARFLEKKGYPELALQFVTD-----P---DHRFELALQLGNLDI 336 (443)
T ss_dssp HHHTT-HHH-----HHHHTGG----G----HHHHHHHHHHHHHTT-HHHHHHHSS------H---HHHHHHHHHCT-HHH
T ss_pred HHHcCChhhhhhhhhhhhhcc----cC-C-hhHHHHHHHHHHHCCCHHHHHhhcCC-----h---HHHhHHHHhcCCHHH
Confidence 344566666655554 2221 11 2 44466777777788888888877542 2 244566778899999
Q ss_pred HHHHHhhCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhcccchhhhHHHHHHHhhhcCC
Q 007519 285 AYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESE 364 (600)
Q Consensus 285 A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 364 (600)
|.++.++.. +...|..|.......|+++-|.+.|.+... +..|+-.|...|+.+...++.......|.
T Consensus 337 A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~- 404 (443)
T PF04053_consen 337 ALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERGD- 404 (443)
T ss_dssp HHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT--
T ss_pred HHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHccC-
Confidence 988877665 566899999999999999999888886543 45666667777888777777777666654
Q ss_pred CchhHHHHHHHHHHhcCChHHHHHHHhcCC
Q 007519 365 SDLILENCLISMYAKCGVIDNAYNIFSNMV 394 (600)
Q Consensus 365 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 394 (600)
++....++.-.|+.++..+++.+..
T Consensus 405 -----~n~af~~~~~lgd~~~cv~lL~~~~ 429 (443)
T PF04053_consen 405 -----INIAFQAALLLGDVEECVDLLIETG 429 (443)
T ss_dssp -----HHHHHHHHHHHT-HHHHHHHHHHTT
T ss_pred -----HHHHHHHHHHcCCHHHHHHHHHHcC
Confidence 2444555566688888888777654
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=94.81 E-value=1.3 Score=44.71 Aligned_cols=160 Identities=16% Similarity=0.050 Sum_probs=105.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCCh-----hHHHHHHHHhc----ccCchHHHHHHHHHHHhhcCCCCCcc
Q 007519 401 WNSMVMGFSHHGLANETLKVFESMLESG-THPNS-----VTFLGILSACS----HAGLVSRGWELFNAMFDVYKIQPGPE 470 (600)
Q Consensus 401 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~~p~~-----~~~~~l~~~~~----~~g~~~~a~~~~~~~~~~~~~~p~~~ 470 (600)
...++....-.||-+.+++.+.+..+.+ +.-.. ..|..++..+. ...+.+.|.++++.+.+. -|+..
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~---yP~s~ 267 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR---YPNSA 267 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh---CCCcH
Confidence 3456666677788888888887765532 11111 12333333222 256788999999999875 57644
Q ss_pred hHH-HHHHHHhhcCChHHHHHHHHhCCC------CCCHHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCCcHHHH-
Q 007519 471 HYV-SMINLLGRAGKIKEAEEFVLRLPF------EPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVL- 542 (600)
Q Consensus 471 ~~~-~l~~~~~~~g~~~~A~~~~~~~~~------~p~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l- 542 (600)
.|. .-++.+...|++++|.+.+++... +-....+..+...+. ..+++++|...+.++.+.+.-+..+|..+
T Consensus 268 lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~-~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~ 346 (468)
T PF10300_consen 268 LFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHM-FQHDWEEAAEYFLRLLKESKWSKAFYAYLA 346 (468)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHH-HHchHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 444 456777889999999999997541 112233444555556 78999999999999999766455555544
Q ss_pred hHHHHhhCCc-------HHHHHHHHHHhh
Q 007519 543 CNIYAASGRH-------VEEHKLRMDMGL 564 (600)
Q Consensus 543 ~~~~~~~g~~-------~~A~~~~~~~~~ 564 (600)
+-++...|+. ++|.+++..+..
T Consensus 347 a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 347 AACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 4445577888 888887766654
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=94.75 E-value=1.6 Score=34.24 Aligned_cols=141 Identities=14% Similarity=0.153 Sum_probs=78.1
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCCCcchHHHHHHHHhhcCChHH
Q 007519 408 FSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKE 487 (600)
Q Consensus 408 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 487 (600)
+.-.|..++..+++.+.... .+..-++.++--....-+=+-..+.++.+-+-+.+.|- ...-.++..|...|
T Consensus 12 ~ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~C-~NlKrVi~C~~~~n---- 83 (161)
T PF09205_consen 12 RILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISKC-GNLKRVIECYAKRN---- 83 (161)
T ss_dssp HHHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG--S-THHHHHHHHHTT----
T ss_pred HHHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhhcCchhh-cchHHHHHHHHHhc----
Confidence 34567778888888777653 23333444433222233333444445544332222221 11223344444444
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCCcHHHHhHHHHhhCCcHHHHHHHHHHhhcCC
Q 007519 488 AEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGV 567 (600)
Q Consensus 488 A~~~~~~~~~~p~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 567 (600)
.+...+...+.... .+|..++-.+++..+.+.+..+|.....++.+|.+.|+..++.+++...-++|+
T Consensus 84 -----------~~se~vD~ALd~lv-~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 84 -----------KLSEYVDLALDILV-KQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp --------------HHHHHHHHHHH-HTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred -----------chHHHHHHHHHHHH-HhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 23444556666777 889988888888888764433889999999999999999999999999888887
Q ss_pred c
Q 007519 568 R 568 (600)
Q Consensus 568 ~ 568 (600)
+
T Consensus 152 k 152 (161)
T PF09205_consen 152 K 152 (161)
T ss_dssp H
T ss_pred H
Confidence 4
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.62 E-value=3.1 Score=37.07 Aligned_cols=59 Identities=20% Similarity=0.070 Sum_probs=46.2
Q ss_pred HHHHHhhhhCCHHHHHHHHHHHHhhCCCCCCc---HHHHhHHHHhhCCcHHHHHHHHHHhhcC
Q 007519 507 LLGACGFCEGNAEIAEHAAKRLLELDPLNAPA---HVVLCNIYAASGRHVEEHKLRMDMGLKG 566 (600)
Q Consensus 507 l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 566 (600)
+...|. +.|.+..|+.-++.+++.-|+.+.+ +..+..+|...|..++|.+.-+.+...-
T Consensus 173 IaryY~-kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~ 234 (254)
T COG4105 173 IARYYL-KRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANY 234 (254)
T ss_pred HHHHHH-HhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcC
Confidence 334566 8999999999999999988766544 5566778999999999999887766543
|
|
| >PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=94.58 E-value=9.3 Score=42.41 Aligned_cols=254 Identities=8% Similarity=-0.035 Sum_probs=160.8
Q ss_pred HHHHhhcCCCCCceeHHHHHHHHHHCCChhHHHHHhhcCCCCCcccHHHHHHHHHhcCCH-hHHHHHHHhcccCCchhHH
Q 007519 92 ARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMM-GEAIVLFEEMEERNVVTWT 170 (600)
Q Consensus 92 A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~A~~~~~~~~~~~~~~~~ 170 (600)
...+.+.+..+|+......+..+.+.+..+....+...+.+++...-...+.++.+.+.. .....+...+..+|..+..
T Consensus 623 ~~~L~~~L~D~d~~VR~~Av~~L~~~~~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~~d~~VR~ 702 (897)
T PRK13800 623 VAELAPYLADPDPGVRRTAVAVLTETTPPGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPPAPALRDHLGSPDPVVRA 702 (897)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhhhcchhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCchHHHHHHhcCCCHHHHH
Confidence 345555566788888888888888888765444455555557777666777776665432 2222233334457777777
Q ss_pred HHHHHHHhcCChhHHHHHHccCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHhcCC
Q 007519 171 SMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGR 250 (600)
Q Consensus 171 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 250 (600)
..+.++...+.-+ ...+...+..+|...-...+.++.+.+..+. +..... .++...-...+.++...+.
T Consensus 703 ~A~~aL~~~~~~~-~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~----l~~~l~------D~~~~VR~~aa~aL~~~~~ 771 (897)
T PRK13800 703 AALDVLRALRAGD-AALFAAALGDPDHRVRIEAVRALVSVDDVES----VAGAAT------DENREVRIAVAKGLATLGA 771 (897)
T ss_pred HHHHHHHhhccCC-HHHHHHHhcCCCHHHHHHHHHHHhcccCcHH----HHHHhc------CCCHHHHHHHHHHHHHhcc
Confidence 7777776554221 2345556667787777777777777655432 222222 4566666677777777765
Q ss_pred hhh-HHH-HhcccCCCCchhHHHHHHHHHhcCChHHHH-HHHhhCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCC
Q 007519 251 LEE-AQN-LFDTVPVRDEISWTSMIDGYLSVGQVSNAY-YLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHG 327 (600)
Q Consensus 251 ~~~-a~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~-~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 327 (600)
.+. +.. +...+..+++.+....+.++...|....+. .+...+.+++...-...+.++...+. +++...+..+.+
T Consensus 772 ~~~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-~~a~~~L~~~L~-- 848 (897)
T PRK13800 772 GGAPAGDAVRALTGDPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAA-DVAVPALVEALT-- 848 (897)
T ss_pred ccchhHHHHHHHhcCCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccc-cchHHHHHHHhc--
Confidence 443 223 333345778888999999999999876553 34455556777777777888887775 456666666664
Q ss_pred CCCChhHHHHHHHHHhcccchhhhHHHHHHHhh
Q 007519 328 VPPLNATFSVLFGAAGATANIDLGRQIHCVLMK 360 (600)
Q Consensus 328 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 360 (600)
.|+...-...+.++.+......+...+..+.+
T Consensus 849 -D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 849 -DPHLDVRKAAVLALTRWPGDPAARDALTTALT 880 (897)
T ss_pred -CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHh
Confidence 56777777777777776434456666665554
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=94.45 E-value=2.2 Score=34.69 Aligned_cols=126 Identities=15% Similarity=0.053 Sum_probs=60.2
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCCCcchHHHHHHHHhh
Q 007519 402 NSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGR 481 (600)
Q Consensus 402 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 481 (600)
..++..+...+.......+++.+...+ ..+....+.++..|++.+ .++..+.++. .++.......+..+.+
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~-------~~~~yd~~~~~~~c~~ 81 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN-------KSNHYDIEKVGKLCEK 81 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh-------ccccCCHHHHHHHHHH
Confidence 344555555566666666666666554 244445555555555432 2222333321 1122233345555666
Q ss_pred cCChHHHHHHHHhCCCCCCHHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCCcHHHHhHHHH
Q 007519 482 AGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYA 547 (600)
Q Consensus 482 ~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 547 (600)
.+.++++.-++.+++. +...+..+....++.+.|++++++ +.++..|..++..+.
T Consensus 82 ~~l~~~~~~l~~k~~~------~~~Al~~~l~~~~d~~~a~~~~~~-----~~~~~lw~~~~~~~l 136 (140)
T smart00299 82 AKLYEEAVELYKKDGN------FKDAIVTLIEHLGNYEKAIEYFVK-----QNNPELWAEVLKALL 136 (140)
T ss_pred cCcHHHHHHHHHhhcC------HHHHHHHHHHcccCHHHHHHHHHh-----CCCHHHHHHHHHHHH
Confidence 6666666666666542 112222222022566666666654 224445555554443
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=94.43 E-value=0.32 Score=38.53 Aligned_cols=80 Identities=13% Similarity=0.165 Sum_probs=41.9
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHHc---------------CCCCChhHHHHHHHHhcccCchHHHHHHHHHHHhh
Q 007519 398 LVSWNSMVMGFSHHGLANETLKVFESMLES---------------GTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDV 462 (600)
Q Consensus 398 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~---------------~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 462 (600)
..++..++.++++.|+.+....+++..-.- ...|+..+..+++.+|+..|++..|.++++...+.
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~ 81 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRK 81 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 344555556666666665555555443110 12244555555555555556666666666655555
Q ss_pred cCCCCCcchHHHHHH
Q 007519 463 YKIQPGPEHYVSMIN 477 (600)
Q Consensus 463 ~~~~p~~~~~~~l~~ 477 (600)
++++-+..+|..|++
T Consensus 82 Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 82 YPIPIPKEFWRRLLE 96 (126)
T ss_pred cCCCCCHHHHHHHHH
Confidence 554445555555443
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=94.27 E-value=2.7 Score=41.16 Aligned_cols=96 Identities=14% Similarity=0.182 Sum_probs=67.1
Q ss_pred HHHHHHhcccCchHHHHHHHHHHHhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhCC--CCCCHH--HHHHHHHHHh
Q 007519 437 LGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLP--FEPDHR--IWGALLGACG 512 (600)
Q Consensus 437 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~--~~~~l~~~~~ 512 (600)
..+..++-+.|+.++|.+.++++.+.+...-...+...|++.|...+.+.++..++.+.. .-|... .|+..+-...
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaR 342 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKAR 342 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHH
Confidence 446667778899999999999998753222235577789999999999999999998875 134443 3444443322
Q ss_pred hhhCC---------------HHHHHHHHHHHHhhCC
Q 007519 513 FCEGN---------------AEIAEHAAKRLLELDP 533 (600)
Q Consensus 513 ~~~g~---------------~~~a~~~~~~~~~~~p 533 (600)
..+| ...|.+.+.++.+.+|
T Consensus 343 -av~d~fs~e~a~rRGls~ae~~aveAi~RAvefNP 377 (539)
T PF04184_consen 343 -AVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNP 377 (539)
T ss_pred -hhccccCchhhhhcCCChhHHHHHHHHHHHHHhCC
Confidence 2232 2346788999999887
|
The molecular function of this protein is uncertain. |
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.22 E-value=3.6 Score=36.18 Aligned_cols=23 Identities=9% Similarity=-0.094 Sum_probs=11.2
Q ss_pred HHHHHHHHHhCCChhHHHHHHHH
Q 007519 300 WTAMISGLVQNELFVEATYLFME 322 (600)
Q Consensus 300 ~~~li~~~~~~g~~~~a~~~~~~ 322 (600)
|+.....|...|.++.|-..+++
T Consensus 94 ~eKAs~lY~E~GspdtAAmaleK 116 (308)
T KOG1585|consen 94 YEKASELYVECGSPDTAAMALEK 116 (308)
T ss_pred HHHHHHHHHHhCCcchHHHHHHH
Confidence 33344455555555555444444
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.13 E-value=0.47 Score=43.41 Aligned_cols=161 Identities=11% Similarity=-0.052 Sum_probs=119.6
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCCCcchHH----HHHHHHhhcC
Q 007519 408 FSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYV----SMINLLGRAG 483 (600)
Q Consensus 408 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~----~l~~~~~~~g 483 (600)
+...|...+|...++++.+. .+.|...+...=++|...|+.+.-...++++.. ...|+...|. .+...+..+|
T Consensus 113 ~~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip--~wn~dlp~~sYv~GmyaFgL~E~g 189 (491)
T KOG2610|consen 113 LWGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIP--KWNADLPCYSYVHGMYAFGLEECG 189 (491)
T ss_pred hhccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcc--ccCCCCcHHHHHHHHHHhhHHHhc
Confidence 34578888888999999875 577777777777899999999999999998885 4566654444 4556677999
Q ss_pred ChHHHHHHHHhCC-CCC-CHHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCC----CCCcHHHHhHHHHhhCCcHHHHH
Q 007519 484 KIKEAEEFVLRLP-FEP-DHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPL----NAPAHVVLCNIYAASGRHVEEHK 557 (600)
Q Consensus 484 ~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~A~~ 557 (600)
-+++|++.-++.. +.| |...-+...-.+. ..|+..++.++..+--..-.. -...|.+.+-.+...+.++.|.+
T Consensus 190 ~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVle-m~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~ale 268 (491)
T KOG2610|consen 190 IYDDAEKQADRALQINRFDCWASHAKAHVLE-MNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALE 268 (491)
T ss_pred cchhHHHHHHhhccCCCcchHHHHHHHHHHH-hcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHH
Confidence 9999999998874 444 5666677777777 889999999888775543221 23567777878888899999999
Q ss_pred HHHHHhhcCCccCCC
Q 007519 558 LRMDMGLKGVRKVPG 572 (600)
Q Consensus 558 ~~~~~~~~~~~~~~~ 572 (600)
+++.-.-+...++.+
T Consensus 269 IyD~ei~k~l~k~Da 283 (491)
T KOG2610|consen 269 IYDREIWKRLEKDDA 283 (491)
T ss_pred HHHHHHHHHhhccch
Confidence 887554444444443
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.97 E-value=4.3 Score=36.17 Aligned_cols=221 Identities=14% Similarity=0.174 Sum_probs=120.8
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHC---CC--CCChhHHHHHHHHHhcccchhhhHHHHHHHhhh-----cCCCchhH
Q 007519 300 WTAMISGLVQNELFVEATYLFMEMRAH---GV--PPLNATFSVLFGAAGATANIDLGRQIHCVLMKT-----ESESDLIL 369 (600)
Q Consensus 300 ~~~li~~~~~~g~~~~a~~~~~~m~~~---g~--~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~ 369 (600)
...++..+.+.|++++.+..|.+|..- .+ .-+..+.+.++...+...+.+....+++.-.+. +-..--.+
T Consensus 68 LKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKT 147 (440)
T KOG1464|consen 68 LKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKT 147 (440)
T ss_pred HHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeec
Confidence 344555666666666666666665421 11 234456666666666566666555555522211 11111223
Q ss_pred HHHHHHHHHhcCChHHHHHHHhcCC--------CC-------ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCCh
Q 007519 370 ENCLISMYAKCGVIDNAYNIFSNMV--------SR-------DLVSWNSMVMGFSHHGLANETLKVFESMLESG-THPNS 433 (600)
Q Consensus 370 ~~~l~~~~~~~~~~~~A~~~~~~~~--------~~-------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~~p~~ 433 (600)
-.-|...|...+.+.+...+++++. .. -...|..-|..|....+-.+...++++..... --|.+
T Consensus 148 NtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHP 227 (440)
T KOG1464|consen 148 NTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHP 227 (440)
T ss_pred cchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCch
Confidence 3456677777777777777776653 11 12466667778888877777777887765432 23444
Q ss_pred hHHHHHHHHh-----cccCchHHHHHHHHHHHhhcCCC--CC---cchHHHHHHHHhhcCC----hHHHHHHHHhCCCCC
Q 007519 434 VTFLGILSAC-----SHAGLVSRGWELFNAMFDVYKIQ--PG---PEHYVSMINLLGRAGK----IKEAEEFVLRLPFEP 499 (600)
Q Consensus 434 ~~~~~l~~~~-----~~~g~~~~a~~~~~~~~~~~~~~--p~---~~~~~~l~~~~~~~g~----~~~A~~~~~~~~~~p 499 (600)
.... +++-| .+.|.+++|-.-|-++.+.+.-. |. ..-|..|+.++.++|- .++|.- ....|
T Consensus 228 lImG-vIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLANMLmkS~iNPFDsQEAKP----yKNdP 302 (440)
T KOG1464|consen 228 LIMG-VIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSGINPFDSQEAKP----YKNDP 302 (440)
T ss_pred HHHh-HHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHHHHHHHcCCCCCcccccCC----CCCCH
Confidence 4433 34433 46788888876555555433222 21 2235566777777762 112110 11455
Q ss_pred CHHHHHHHHHHHhhhhCCHHHHHHHHHH
Q 007519 500 DHRIWGALLGACGFCEGNAEIAEHAAKR 527 (600)
Q Consensus 500 ~~~~~~~l~~~~~~~~g~~~~a~~~~~~ 527 (600)
.......++.+|. .+++.+-+++++.
T Consensus 303 EIlAMTnlv~aYQ--~NdI~eFE~Il~~ 328 (440)
T KOG1464|consen 303 EILAMTNLVAAYQ--NNDIIEFERILKS 328 (440)
T ss_pred HHHHHHHHHHHHh--cccHHHHHHHHHh
Confidence 6667778888876 5565554444443
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.92 E-value=9.2 Score=39.77 Aligned_cols=99 Identities=15% Similarity=0.171 Sum_probs=66.8
Q ss_pred HHHHHcCCChhHHHHHhhhcCC--C---ChhhHHHHHHHHHhcCChHHHHHHhhcCCCCCceeHHHHHHHHHHCCChhHH
Q 007519 49 LSGFLQNGRLSEARRLFEEMPE--R---NVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEA 123 (600)
Q Consensus 49 ~~~~~~~~~~~~A~~~~~~~~~--~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 123 (600)
++.+.+.+.+++|+...+.... + -.......+..+.-.|++++|-...-.|...+..-|..-+.-+...++....
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~I 442 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDI 442 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccchh
Confidence 5566777788888887777664 1 1235666677777778888888888778777777777777777777766655
Q ss_pred HHHhhcCCC-CCcccHHHHHHHHHh
Q 007519 124 RKVFNSMPI-KNVISWNAMIAGYVE 147 (600)
Q Consensus 124 ~~~~~~~~~-~~~~~~~~l~~~~~~ 147 (600)
..++-.-.. .++..|..++-.+..
T Consensus 443 a~~lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 443 APYLPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred hccCCCCCcccCchHHHHHHHHHHH
Confidence 554433333 456677777766665
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=93.86 E-value=12 Score=40.98 Aligned_cols=102 Identities=14% Similarity=0.082 Sum_probs=53.9
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCChhHHH----HHHHHhcccCchHHHHHHHHHHHhhcCCCCCcchHHHHHHHHh
Q 007519 405 VMGFSHHGLANETLKVFESMLESGTHPNSVTFL----GILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLG 480 (600)
Q Consensus 405 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~----~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 480 (600)
++.--++|.+.+|+.+ ..|+...+. .....+...+.+++|.-.|+..-+ ..--+.+|.
T Consensus 915 ~n~I~kh~Ly~~aL~l--------y~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk----------lekAl~a~~ 976 (1265)
T KOG1920|consen 915 KNYIKKHGLYDEALAL--------YKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK----------LEKALKAYK 976 (1265)
T ss_pred HHHHHhcccchhhhhe--------eccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc----------HHHHHHHHH
Confidence 3333444445554444 345554443 334445556677777666665432 223466778
Q ss_pred hcCChHHHHHHHHhCCCCCCHHH--HHHHHHHHhhhhCCHHHHHHHH
Q 007519 481 RAGKIKEAEEFVLRLPFEPDHRI--WGALLGACGFCEGNAEIAEHAA 525 (600)
Q Consensus 481 ~~g~~~~A~~~~~~~~~~p~~~~--~~~l~~~~~~~~g~~~~a~~~~ 525 (600)
.+|+|.+|+.+..++....+... -..+...+. ..++.-+|-++.
T Consensus 977 ~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~-e~~kh~eAa~il 1022 (1265)
T KOG1920|consen 977 ECGDWREALSLAAQLSEGKDELVILAEELVSRLV-EQRKHYEAAKIL 1022 (1265)
T ss_pred HhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHH-HcccchhHHHHH
Confidence 88888888888877653333322 134444444 444444443333
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.82 E-value=0.33 Score=40.88 Aligned_cols=128 Identities=15% Similarity=0.048 Sum_probs=81.3
Q ss_pred HHHhcccCchHHHHHHHHHHHhhcCCCCC---cchHHHHHHHHhhcCChHHHHHHHHhCC-CCCCH-HHHHHHHHHHhhh
Q 007519 440 LSACSHAGLVSRGWELFNAMFDVYKIQPG---PEHYVSMINLLGRAGKIKEAEEFVLRLP-FEPDH-RIWGALLGACGFC 514 (600)
Q Consensus 440 ~~~~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~-~~~~~l~~~~~~~ 514 (600)
..-+...|++++|..-|..++....-.|. ...|..-+.++.+.+.++.|.+-..+.. +.|.. ..+..-..+|- +
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeaye-k 180 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYE-K 180 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHH-h
Confidence 34466789999999999998875222221 3355566677888999999988876653 66643 23333344566 7
Q ss_pred hCCHHHHHHHHHHHHhhCCCCCCcHHHHhHHHHhhCCcHHHHH--HHHHHhhcCCc
Q 007519 515 EGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHK--LRMDMGLKGVR 568 (600)
Q Consensus 515 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~--~~~~~~~~~~~ 568 (600)
...+++|+.-|+++++.+|....+-...++.--......+..+ +...+++.|.-
T Consensus 181 ~ek~eealeDyKki~E~dPs~~ear~~i~rl~~~i~ernEkmKee~m~kLKdlGN~ 236 (271)
T KOG4234|consen 181 MEKYEEALEDYKKILESDPSRREAREAIARLPPKINERNEKMKEEMMEKLKDLGNF 236 (271)
T ss_pred hhhHHHHHHHHHHHHHhCcchHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 7889999999999999999655444444433322222233333 55555665544
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.72 E-value=1.6 Score=38.71 Aligned_cols=187 Identities=12% Similarity=0.091 Sum_probs=116.0
Q ss_pred cCChHHHHHHHhcCC--C-----CChhhHHHHHHHHHhcCChHHHHHHHHHHHHc---CC--CCChhHHHHHHHHhcccC
Q 007519 380 CGVIDNAYNIFSNMV--S-----RDLVSWNSMVMGFSHHGLANETLKVFESMLES---GT--HPNSVTFLGILSACSHAG 447 (600)
Q Consensus 380 ~~~~~~A~~~~~~~~--~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~---~~--~p~~~~~~~l~~~~~~~g 447 (600)
..++++|+.-|+++. . ........++....+.|++++.++.+.++... .+ .-+..+.+++++.-+...
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~ 119 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSK 119 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhh
Confidence 345677777776654 1 12234455677788888888888877777542 11 234456777777666666
Q ss_pred chHHHHHHHHHHHhhcCCCCC----cchHHHHHHHHhhcCChHHHHHHHHhCC-------CCCC-------HHHHHHHHH
Q 007519 448 LVSRGWELFNAMFDVYKIQPG----PEHYVSMINLLGRAGKIKEAEEFVLRLP-------FEPD-------HRIWGALLG 509 (600)
Q Consensus 448 ~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~p~-------~~~~~~l~~ 509 (600)
+.+.-.++++.-.+...-..+ -.+-..|...|...|.+.+-.+++.++. -..| ...|..-+.
T Consensus 120 ~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQ 199 (440)
T KOG1464|consen 120 NMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQ 199 (440)
T ss_pred hhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhh
Confidence 666665555544332111122 3344568888888888888888887762 0111 233444455
Q ss_pred HHhhhhCCHHHHHHHHHHHHhhCCC--CCCcHHHH----hHHHHhhCCcHHHHH-HHHHHhhcCC
Q 007519 510 ACGFCEGNAEIAEHAAKRLLELDPL--NAPAHVVL----CNIYAASGRHVEEHK-LRMDMGLKGV 567 (600)
Q Consensus 510 ~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l----~~~~~~~g~~~~A~~-~~~~~~~~~~ 567 (600)
.|. .+.+...-..+|++++.+..- +|.+...+ +....+.|.|++|.. +++..+...-
T Consensus 200 mYT-~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDE 263 (440)
T KOG1464|consen 200 MYT-EQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDE 263 (440)
T ss_pred hhh-hhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhcccc
Confidence 566 777778888899998885532 45443332 445677899999988 8888775443
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.45 E-value=5.4 Score=35.55 Aligned_cols=191 Identities=21% Similarity=0.176 Sum_probs=120.5
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhcCC-----CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHH
Q 007519 367 LILENCLISMYAKCGVIDNAYNIFSNMV-----SRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILS 441 (600)
Q Consensus 367 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~ 441 (600)
...+......+...+++..+...+.... ......+......+...+++..+...+.........+ .........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 137 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLAL 137 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHH
Confidence 3455566667777777777777666543 3344556666666777777788888888777643222 122222222
Q ss_pred -HhcccCchHHHHHHHHHHHhhcCCCC----CcchHHHHHHHHhhcCChHHHHHHHHhCC-CCCC--HHHHHHHHHHHhh
Q 007519 442 -ACSHAGLVSRGWELFNAMFDVYKIQP----GPEHYVSMINLLGRAGKIKEAEEFVLRLP-FEPD--HRIWGALLGACGF 513 (600)
Q Consensus 442 -~~~~~g~~~~a~~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~--~~~~~~l~~~~~~ 513 (600)
.+...|+++.+...+.+... ..| ....+......+...++.+.|...+.+.. ..++ ...+..+...+.
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~- 213 (291)
T COG0457 138 GALYELGDYEEALELYEKALE---LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYL- 213 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHh---cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHH-
Confidence 56777888888888887743 233 23344444445667778888888877764 3333 455555666666
Q ss_pred hhCCHHHHHHHHHHHHhhCCCCCCcHHHHhHHHHhhCCcHHHHHHHHHH
Q 007519 514 CEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDM 562 (600)
Q Consensus 514 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 562 (600)
..++.+.+...+..+....|.....+..+...+...|.++++...+...
T Consensus 214 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (291)
T COG0457 214 KLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKA 262 (291)
T ss_pred HcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHH
Confidence 6777888888888888887754555666666666666677777755443
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.42 E-value=2.7 Score=35.59 Aligned_cols=114 Identities=11% Similarity=0.034 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHcCCCCChhHHH--HHHHHhcccCchHHHHHHHHHHHhhcCCCCC----cchHHHHHHHHhhcCChHHHH
Q 007519 416 ETLKVFESMLESGTHPNSVTFL--GILSACSHAGLVSRGWELFNAMFDVYKIQPG----PEHYVSMINLLGRAGKIKEAE 489 (600)
Q Consensus 416 ~a~~~~~~m~~~~~~p~~~~~~--~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~ 489 (600)
+.....+++....-......+. .+...+...|++++|...++..... ..| ..+--.|.+.....|.+|+|+
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL 146 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAAL 146 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 4445555555432111122222 2335677888999999888877643 112 222334667788999999999
Q ss_pred HHHHhCCCCC-CHHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCC
Q 007519 490 EFVLRLPFEP-DHRIWGALLGACGFCEGNAEIAEHAAKRLLELDP 533 (600)
Q Consensus 490 ~~~~~~~~~p-~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p 533 (600)
..++....+. .+.....-...+. ..|+..+|...|+++++..+
T Consensus 147 ~~L~t~~~~~w~~~~~elrGDill-~kg~k~~Ar~ay~kAl~~~~ 190 (207)
T COG2976 147 KTLDTIKEESWAAIVAELRGDILL-AKGDKQEARAAYEKALESDA 190 (207)
T ss_pred HHHhccccccHHHHHHHHhhhHHH-HcCchHHHHHHHHHHHHccC
Confidence 9998876221 2222333444667 88999999999999998775
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=93.39 E-value=3.6 Score=33.43 Aligned_cols=38 Identities=21% Similarity=0.114 Sum_probs=15.5
Q ss_pred HHHHHHcCCChhHHHHHhhhcCC---CChhhHHHHHHHHHh
Q 007519 48 MLSGFLQNGRLSEARRLFEEMPE---RNVVSWTAMICGLAD 85 (600)
Q Consensus 48 l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~ 85 (600)
++..+...+.+.....+++.+.. .++..++.++..|++
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~ 53 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKLNSENPALQTKLIELYAK 53 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHH
Confidence 34444434444444444444332 122344444444443
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.37 E-value=0.26 Score=38.21 Aligned_cols=58 Identities=22% Similarity=0.147 Sum_probs=51.7
Q ss_pred HHhhhhCCHHHHHHHHHHHHhhCCCCCCcHHHHhHHHHhhCCcHHHHH-HHHHHhhcCCc
Q 007519 510 ACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHK-LRMDMGLKGVR 568 (600)
Q Consensus 510 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~-~~~~~~~~~~~ 568 (600)
+.. ..|+.+.|++.|.+++.+-|.++.+|+.-+.++.-+|+.++|.. +-+.++-.|-+
T Consensus 52 ala-E~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~ 110 (175)
T KOG4555|consen 52 ALA-EAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ 110 (175)
T ss_pred HHH-hccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc
Confidence 345 78999999999999999999999999999999999999999999 77777666654
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=93.23 E-value=2.1 Score=35.15 Aligned_cols=108 Identities=20% Similarity=0.187 Sum_probs=61.7
Q ss_pred cccCchHHHHHHHHHHHhhcCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhCC-CCCCHHHHHHHHHHHhhhhCCHHHH
Q 007519 444 SHAGLVSRGWELFNAMFDVYKIQPG-PEHYVSMINLLGRAGKIKEAEEFVLRLP-FEPDHRIWGALLGACGFCEGNAEIA 521 (600)
Q Consensus 444 ~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~~~~~~~~g~~~~a 521 (600)
...++.+.+..++..+.- +.|. +..-..-+..+...|+|.+|..+++++. ..|....-..++..|....||.+ =
T Consensus 21 l~~~~~~D~e~lL~ALrv---LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~~-W 96 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRV---LRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDPS-W 96 (160)
T ss_pred HccCChHHHHHHHHHHHH---hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCChH-H
Confidence 455677777777777763 4564 3333345566778888888888888876 34445555566666663444432 2
Q ss_pred HHHHHHHHhhCCCCCCcHHHHhHHHHhhCCcHHHHH
Q 007519 522 EHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHK 557 (600)
Q Consensus 522 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 557 (600)
..+..++++..+ ++.+... ...+....+...|..
T Consensus 97 r~~A~evle~~~-d~~a~~L-v~~Ll~~~~~~~a~~ 130 (160)
T PF09613_consen 97 RRYADEVLESGA-DPDARAL-VRALLARADLEPAHE 130 (160)
T ss_pred HHHHHHHHhcCC-ChHHHHH-HHHHHHhccccchhh
Confidence 233444555555 4444433 344444444444444
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.02 E-value=1.3 Score=37.51 Aligned_cols=94 Identities=16% Similarity=0.113 Sum_probs=58.6
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCChh-----HHHHHHHHhcccCchHHHHHHHHHHHhhcCCCCC-cchHHHHHHH
Q 007519 405 VMGFSHHGLANETLKVFESMLESGTHPNSV-----TFLGILSACSHAGLVSRGWELFNAMFDVYKIQPG-PEHYVSMINL 478 (600)
Q Consensus 405 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-----~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~ 478 (600)
.+-+...|++++|..-|...... +++... .|..-..++.+.+.++.|+.-..+.++ +.|+ ...+..-+.+
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~-cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaie---l~pty~kAl~RRAea 177 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALES-CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIE---LNPTYEKALERRAEA 177 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHh-CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHh---cCchhHHHHHHHHHH
Confidence 34467788888888888887764 344332 333334456677777777776666654 3453 3334444567
Q ss_pred HhhcCChHHHHHHHHhCC-CCCCHH
Q 007519 479 LGRAGKIKEAEEFVLRLP-FEPDHR 502 (600)
Q Consensus 479 ~~~~g~~~~A~~~~~~~~-~~p~~~ 502 (600)
|.+...+++|++=|.++. ..|...
T Consensus 178 yek~ek~eealeDyKki~E~dPs~~ 202 (271)
T KOG4234|consen 178 YEKMEKYEEALEDYKKILESDPSRR 202 (271)
T ss_pred HHhhhhHHHHHHHHHHHHHhCcchH
Confidence 777788888887777764 455433
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=92.89 E-value=3.8 Score=32.23 Aligned_cols=61 Identities=13% Similarity=0.156 Sum_probs=39.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccCchHHHHHHHHHHHhh
Q 007519 401 WNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDV 462 (600)
Q Consensus 401 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 462 (600)
....+..+..+|.-++-.+++.++.+. -.+++.....+..+|.+.|+..++.+++.++.+.
T Consensus 89 vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 89 VDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEK 149 (161)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 445566777778777777777777653 3667777777778888888888888888877765
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=92.82 E-value=0.24 Score=28.37 Aligned_cols=31 Identities=26% Similarity=0.145 Sum_probs=23.4
Q ss_pred HHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCC
Q 007519 503 IWGALLGACGFCEGNAEIAEHAAKRLLELDPL 534 (600)
Q Consensus 503 ~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~ 534 (600)
+|..+...+. ..|+.++|+..++++++++|+
T Consensus 3 ~~~~lg~~y~-~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYE-QLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHH-HTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHH-HcCCHHHHHHHHHHHHhhCCC
Confidence 4555666666 788888888888888888773
|
... |
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=92.66 E-value=0.019 Score=47.21 Aligned_cols=128 Identities=13% Similarity=0.131 Sum_probs=74.7
Q ss_pred HHHHHhcccchhhhHHHHHHHhhhcCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHH
Q 007519 338 LFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANET 417 (600)
Q Consensus 338 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 417 (600)
++..+.+.+.+.....+++.+.+.+...+....+.++..|++.++.++..++++.... .-...++..|.+.|.++++
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~a 89 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEEA 89 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHHH
Confidence 3455566666777777777766665556677778888888888777777777774332 2234456666677777777
Q ss_pred HHHHHHHHHcCCCCChhHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCCCcchHHHHHHHHhhcCC
Q 007519 418 LKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGK 484 (600)
Q Consensus 418 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 484 (600)
.-++.++.... ..+..+...++++.|.++..+ .+++..|..++..+...+.
T Consensus 90 ~~Ly~~~~~~~---------~al~i~~~~~~~~~a~e~~~~-------~~~~~l~~~l~~~~l~~~~ 140 (143)
T PF00637_consen 90 VYLYSKLGNHD---------EALEILHKLKDYEEAIEYAKK-------VDDPELWEQLLKYCLDSKP 140 (143)
T ss_dssp HHHHHCCTTHT---------TCSSTSSSTHCSCCCTTTGGG-------CSSSHHHHHHHHHHCTSTC
T ss_pred HHHHHHcccHH---------HHHHHHHHHccHHHHHHHHHh-------cCcHHHHHHHHHHHHhcCc
Confidence 77666543211 111113344555555532221 2456677777777666554
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=91.74 E-value=1.1 Score=36.83 Aligned_cols=81 Identities=21% Similarity=0.159 Sum_probs=57.2
Q ss_pred hHHHHHHH---HhhcCChHHHHHHHHhCC-CCCCHHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCCcHHHHhHHH
Q 007519 471 HYVSMINL---LGRAGKIKEAEEFVLRLP-FEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIY 546 (600)
Q Consensus 471 ~~~~l~~~---~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 546 (600)
+.+.|+.. -.+.++.+++..+++.+. +.|.......+-.......|++.+|+++++.+.+-.|..+..--.++.++
T Consensus 9 iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL 88 (160)
T PF09613_consen 9 IVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCL 88 (160)
T ss_pred HHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHH
Confidence 44444443 357789999999999986 77877766665554333889999999999998887776665555555555
Q ss_pred HhhCC
Q 007519 547 AASGR 551 (600)
Q Consensus 547 ~~~g~ 551 (600)
...|+
T Consensus 89 ~~~~D 93 (160)
T PF09613_consen 89 YALGD 93 (160)
T ss_pred HHcCC
Confidence 55554
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.57 E-value=1.7 Score=38.93 Aligned_cols=89 Identities=11% Similarity=0.059 Sum_probs=60.4
Q ss_pred CChhhHHHHHHHHHh-----CCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhcccc----------------hhhhHH
Q 007519 295 RDAVAWTAMISGLVQ-----NELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATAN----------------IDLGRQ 353 (600)
Q Consensus 295 ~~~~~~~~li~~~~~-----~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~----------------~~~a~~ 353 (600)
+|..+|-..+..+.. .+..+-....++.|.+-|+.-|..+|..|+..+-+..- -+-+..
T Consensus 65 RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~ 144 (406)
T KOG3941|consen 65 RDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIK 144 (406)
T ss_pred ccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHH
Confidence 455555555555533 24455556667777788888888888888877654321 233567
Q ss_pred HHHHHhhhcCCCchhHHHHHHHHHHhcCCh
Q 007519 354 IHCVLMKTESESDLILENCLISMYAKCGVI 383 (600)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 383 (600)
+++.|...|+.||..+-..|++++.+.+-.
T Consensus 145 vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 145 VLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred HHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 788888888888888888888888776653
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=91.50 E-value=1.3 Score=35.69 Aligned_cols=95 Identities=17% Similarity=0.157 Sum_probs=54.5
Q ss_pred hHHHHHHHH---hhcCChHHHHHHHHhCC-CCCCHHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCCcHHHHhHHH
Q 007519 471 HYVSMINLL---GRAGKIKEAEEFVLRLP-FEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIY 546 (600)
Q Consensus 471 ~~~~l~~~~---~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 546 (600)
+.+.|++.. ...++++++..+++.+. +.|+......+-.......|++.+|+++++.+.+-.|..+..--.++..+
T Consensus 9 iv~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL 88 (153)
T TIGR02561 9 LLGGLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCL 88 (153)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHH
Confidence 344444433 35778888888887775 56665555444443322778888888888887776664444444444444
Q ss_pred HhhCCcHHHHH-HHHHHhhcCC
Q 007519 547 AASGRHVEEHK-LRMDMGLKGV 567 (600)
Q Consensus 547 ~~~g~~~~A~~-~~~~~~~~~~ 567 (600)
.-.|| ..++ .-.++.+.+-
T Consensus 89 ~al~D--p~Wr~~A~~~le~~~ 108 (153)
T TIGR02561 89 NAKGD--AEWHVHADEVLARDA 108 (153)
T ss_pred HhcCC--hHHHHHHHHHHHhCC
Confidence 45555 3344 3334444443
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=91.31 E-value=0.18 Score=29.00 Aligned_cols=24 Identities=33% Similarity=0.483 Sum_probs=18.9
Q ss_pred CC-CcchHHHHHHHHhhcCChHHHH
Q 007519 466 QP-GPEHYVSMINLLGRAGKIKEAE 489 (600)
Q Consensus 466 ~p-~~~~~~~l~~~~~~~g~~~~A~ 489 (600)
.| +...|..|+.+|...|++++|+
T Consensus 9 ~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 9 NPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 56 5778888888888888888775
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=91.24 E-value=0.4 Score=28.00 Aligned_cols=25 Identities=20% Similarity=0.060 Sum_probs=13.0
Q ss_pred HHHHHHHHhhhhCCHHHHHHHHHHHH
Q 007519 504 WGALLGACGFCEGNAEIAEHAAKRLL 529 (600)
Q Consensus 504 ~~~l~~~~~~~~g~~~~a~~~~~~~~ 529 (600)
|..+...+. ..|++++|+.++++++
T Consensus 2 l~~Lg~~~~-~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYR-QQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHH-HCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHH
Confidence 344555555 5555666665555544
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.16 E-value=22 Score=37.25 Aligned_cols=72 Identities=17% Similarity=0.052 Sum_probs=35.8
Q ss_pred HHHHhcCCHhHHHHHHHhccc--C---CchhHHHHHHHHHhcCChhHHHHHHccCCCCCcchHHHHHHHHHhcCChh
Q 007519 143 AGYVECCMMGEAIVLFEEMEE--R---NVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHK 214 (600)
Q Consensus 143 ~~~~~~~~~~~A~~~~~~~~~--~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 214 (600)
+-+.+.+.+++|....+.... + -.......|..+.-.|++++|-...-.|...+..-|...+..+...++..
T Consensus 364 ~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~ 440 (846)
T KOG2066|consen 364 DWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLT 440 (846)
T ss_pred HHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccc
Confidence 334444555555555444332 1 11234445555555566666665555555555555555555555554443
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=91.14 E-value=1 Score=38.39 Aligned_cols=96 Identities=15% Similarity=0.219 Sum_probs=62.8
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHccCCCCC------cchHHHHHHHHHhcCChhHHHHHHHHHHhhhcCCCCCChhhHHH
Q 007519 167 VTWTSMISGYCRAGEVEEGYCLFRRMPRKN------VVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNS 240 (600)
Q Consensus 167 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 240 (600)
..+..+.+.|++.|+.+.|.+.|.++.+.. ...+-.+|+.....+++..+...+.+.....+.+..++...-..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 456778888999999999999998887632 23567788888888999999888888887643333322222111
Q ss_pred HHHH--HHhcCChhhHHHHhcccC
Q 007519 241 MING--YIRFGRLEEAQNLFDTVP 262 (600)
Q Consensus 241 l~~~--~~~~~~~~~a~~~~~~~~ 262 (600)
+..+ +...+++..|-+.|-...
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccC
Confidence 2221 224566666666655554
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=91.12 E-value=0.62 Score=42.77 Aligned_cols=91 Identities=15% Similarity=0.167 Sum_probs=57.7
Q ss_pred HhcccCchHHHHHHHHHHHhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhCC-CC-CCHHHHHHHHHHHhhhhCCH
Q 007519 442 ACSHAGLVSRGWELFNAMFDVYKIQP-GPEHYVSMINLLGRAGKIKEAEEFVLRLP-FE-PDHRIWGALLGACGFCEGNA 518 (600)
Q Consensus 442 ~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~-p~~~~~~~l~~~~~~~~g~~ 518 (600)
-|.+.|.+++|+.+|...+. ..| ++..+..-+.+|.+..++..|+.-.+... +. --...|..-+.+-. ..|..
T Consensus 106 ~yFKQgKy~EAIDCYs~~ia---~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~-~Lg~~ 181 (536)
T KOG4648|consen 106 TYFKQGKYEEAIDCYSTAIA---VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARE-SLGNN 181 (536)
T ss_pred hhhhccchhHHHHHhhhhhc---cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHH-HHhhH
Confidence 35567777777777776653 456 66677777777777777776665554443 11 11123333333434 66788
Q ss_pred HHHHHHHHHHHhhCCCCC
Q 007519 519 EIAEHAAKRLLELDPLNA 536 (600)
Q Consensus 519 ~~a~~~~~~~~~~~p~~~ 536 (600)
++|.+-++..+++.|++.
T Consensus 182 ~EAKkD~E~vL~LEP~~~ 199 (536)
T KOG4648|consen 182 MEAKKDCETVLALEPKNI 199 (536)
T ss_pred HHHHHhHHHHHhhCcccH
Confidence 888888888888888643
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=90.96 E-value=4.4 Score=34.55 Aligned_cols=94 Identities=11% Similarity=-0.038 Sum_probs=48.9
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChh--HHHHHHHHHhcccchhhhHHHHHHHhhhcCCCc-------hhH
Q 007519 299 AWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNA--TFSVLFGAAGATANIDLGRQIHCVLMKTESESD-------LIL 369 (600)
Q Consensus 299 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-------~~~ 369 (600)
.+..+...|++.|+.+.|++.|.++.+....|... .+..++..+.-.+++..+......+...-.... ..+
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 45566666677777777777777766654333322 344455555556666666555554433222111 111
Q ss_pred HHHHHHHHHhcCChHHHHHHHhcCC
Q 007519 370 ENCLISMYAKCGVIDNAYNIFSNMV 394 (600)
Q Consensus 370 ~~~l~~~~~~~~~~~~A~~~~~~~~ 394 (600)
|..+ .+...+++..|-+.|-...
T Consensus 118 ~~gL--~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 118 YEGL--ANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHH--HHHHhchHHHHHHHHHccC
Confidence 2222 2234567777766665554
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=90.75 E-value=1 Score=27.74 Aligned_cols=27 Identities=15% Similarity=0.465 Sum_probs=15.1
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHH
Q 007519 400 SWNSMVMGFSHHGLANETLKVFESMLE 426 (600)
Q Consensus 400 ~~~~l~~~~~~~~~~~~a~~~~~~m~~ 426 (600)
+|..+..+|...|++++|+++|++..+
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~ 29 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALA 29 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344455555555555555555555555
|
|
| >TIGR02270 conserved hypothetical protein | Back alignment and domain information |
|---|
Probab=90.53 E-value=19 Score=35.51 Aligned_cols=170 Identities=8% Similarity=-0.039 Sum_probs=80.4
Q ss_pred HHHHHcCCChhHHHHHhhhcCC--CChhhHHHHHHHHHhcCChHHHHHHhhcCCCCCceeHHHHHHHHHHCCChhHHHHH
Q 007519 49 LSGFLQNGRLSEARRLFEEMPE--RNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKV 126 (600)
Q Consensus 49 ~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 126 (600)
++++...| +.++..+-.... ++...+..-..++....+......+.+.+..++.......+.++...++......+
T Consensus 45 LdgL~~~G--~~a~~~L~~aL~~d~~~ev~~~aa~al~~~~~~~~~~~L~~~L~d~~~~vr~aaa~ALg~i~~~~a~~~L 122 (410)
T TIGR02270 45 VDGLVLAG--KAATELLVSALAEADEPGRVACAALALLAQEDALDLRSVLAVLQAGPEGLCAGIQAALGWLGGRQAEPWL 122 (410)
T ss_pred HHHHHHhh--HhHHHHHHHHHhhCCChhHHHHHHHHHhccCChHHHHHHHHHhcCCCHHHHHHHHHHHhcCCchHHHHHH
Confidence 45555555 445555544442 33334433333333222222234444444445555666666666666666655555
Q ss_pred hhcCCCCCcccHHHHHHHHHhcCCHhHHHHHHHhcccCCchhHHHHHHHHHhcCChhHHHHHHccCCCCCcchHHHHHHH
Q 007519 127 FNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGG 206 (600)
Q Consensus 127 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~ 206 (600)
..-...+++......+.++...+. +-...+...+..+|..+...-+.++...++.+..-.+..-....|...-..-+.+
T Consensus 123 ~~~L~~~~p~vR~aal~al~~r~~-~~~~~L~~~L~d~d~~Vra~A~raLG~l~~~~a~~~L~~al~d~~~~VR~aA~~a 201 (410)
T TIGR02270 123 EPLLAASEPPGRAIGLAALGAHRH-DPGPALEAALTHEDALVRAAALRALGELPRRLSESTLRLYLRDSDPEVRFAALEA 201 (410)
T ss_pred HHHhcCCChHHHHHHHHHHHhhcc-ChHHHHHHHhcCCCHHHHHHHHHHHHhhccccchHHHHHHHcCCCHHHHHHHHHH
Confidence 555545555555555555554331 1122222223345555555555555555544333332222334455555555555
Q ss_pred HHhcCChhHHHHHHHH
Q 007519 207 FAWNGFHKESLLLFIE 222 (600)
Q Consensus 207 ~~~~~~~~~a~~~~~~ 222 (600)
....|. ..|...+..
T Consensus 202 l~~lG~-~~A~~~l~~ 216 (410)
T TIGR02270 202 GLLAGS-RLAWGVCRR 216 (410)
T ss_pred HHHcCC-HhHHHHHHH
Confidence 555555 444444443
|
Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown. |
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=90.42 E-value=2.9 Score=40.52 Aligned_cols=122 Identities=14% Similarity=0.091 Sum_probs=61.4
Q ss_pred HhcCChHHHHHHHH-HHHHcCCCCChhHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCCCcchHHHHHHHHhhcCChHH
Q 007519 409 SHHGLANETLKVFE-SMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKE 487 (600)
Q Consensus 409 ~~~~~~~~a~~~~~-~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 487 (600)
...|+.-.|-+-+. .+....-.|+.....+ ......|+++.+.+.+..... -+.....+..++++...+.|++++
T Consensus 300 ~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~--~i~~~lg~ye~~~~~~s~~~~--~~~s~~~~~~~~~r~~~~l~r~~~ 375 (831)
T PRK15180 300 LADGDIIAASQQLFAALRNQQQDPVLIQLRS--VIFSHLGYYEQAYQDISDVEK--IIGTTDSTLRCRLRSLHGLARWRE 375 (831)
T ss_pred hhccCHHHHHHHHHHHHHhCCCCchhhHHHH--HHHHHhhhHHHHHHHhhchhh--hhcCCchHHHHHHHhhhchhhHHH
Confidence 34555555444333 3333222333332222 234556677776666655543 223345566666666666777777
Q ss_pred HHHHHHhCC--CCCCHHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCC
Q 007519 488 AEEFVLRLP--FEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLN 535 (600)
Q Consensus 488 A~~~~~~~~--~~p~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~ 535 (600)
|...-.-|. .-.++.+......+.. ..|-++++...+++.+.++|..
T Consensus 376 a~s~a~~~l~~eie~~ei~~iaa~sa~-~l~~~d~~~~~wk~~~~~~~~~ 424 (831)
T PRK15180 376 ALSTAEMMLSNEIEDEEVLTVAAGSAD-ALQLFDKSYHYWKRVLLLNPET 424 (831)
T ss_pred HHHHHHHHhccccCChhheeeecccHH-HHhHHHHHHHHHHHHhccCChh
Confidence 766665553 1112233332233333 4566666777777776666543
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=90.41 E-value=0.44 Score=27.84 Aligned_cols=24 Identities=13% Similarity=0.202 Sum_probs=20.0
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHh
Q 007519 471 HYVSMINLLGRAGKIKEAEEFVLR 494 (600)
Q Consensus 471 ~~~~l~~~~~~~g~~~~A~~~~~~ 494 (600)
++..|+.+|.+.|++++|++++++
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHH
Confidence 467889999999999999999877
|
|
| >TIGR02270 conserved hypothetical protein | Back alignment and domain information |
|---|
Probab=89.90 E-value=21 Score=35.15 Aligned_cols=185 Identities=8% Similarity=-0.052 Sum_probs=73.2
Q ss_pred HHHHHhcccCCchhHHHHHHHHHhcCChhHHHHHHccCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhhhcCCCCCC
Q 007519 155 IVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCN 234 (600)
Q Consensus 155 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 234 (600)
..+++.+..++..+....+.++.+.+.......+...+..++.......+.++...+. .+...+....+ .+|
T Consensus 89 ~~L~~~L~d~~~~vr~aaa~ALg~i~~~~a~~~L~~~L~~~~p~vR~aal~al~~r~~--~~~~~L~~~L~------d~d 160 (410)
T TIGR02270 89 RSVLAVLQAGPEGLCAGIQAALGWLGGRQAEPWLEPLLAASEPPGRAIGLAALGAHRH--DPGPALEAALT------HED 160 (410)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHhcCCchHHHHHHHHHhcCCChHHHHHHHHHHHhhcc--ChHHHHHHHhc------CCC
Confidence 3333333344444445555555555444444444333333343333333333333221 12222222221 333
Q ss_pred hhhHHHHHHHHHhcCChhhHHHHhcccCCCCchhHHHHHHHHHhcCChHHHHHHHhh-CCCCChhhHHHHHHHHHhCCCh
Q 007519 235 VQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHN-MPDRDAVAWTAMISGLVQNELF 313 (600)
Q Consensus 235 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~-~~~~~~~~~~~li~~~~~~g~~ 313 (600)
...-...+.++...+..+..-.+..-....++.+-..-+.+....|. .+|...+.. ...++....-.+...+... ..
T Consensus 161 ~~Vra~A~raLG~l~~~~a~~~L~~al~d~~~~VR~aA~~al~~lG~-~~A~~~l~~~~~~~g~~~~~~l~~~lal~-~~ 238 (410)
T TIGR02270 161 ALVRAAALRALGELPRRLSESTLRLYLRDSDPEVRFAALEAGLLAGS-RLAWGVCRRFQVLEGGPHRQRLLVLLAVA-GG 238 (410)
T ss_pred HHHHHHHHHHHHhhccccchHHHHHHHcCCCHHHHHHHHHHHHHcCC-HhHHHHHHHHHhccCccHHHHHHHHHHhC-Cc
Confidence 44444444444444443332222222234444455555555555554 344433333 2223333222222222222 22
Q ss_pred hHHHHHHHHHHHCCCCCChhHHHHHHHHHhcccchhhhHHH
Q 007519 314 VEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQI 354 (600)
Q Consensus 314 ~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~ 354 (600)
++++..+..+.+. ++ +-...+.++...|+...+..+
T Consensus 239 ~~a~~~L~~ll~d---~~--vr~~a~~AlG~lg~p~av~~L 274 (410)
T TIGR02270 239 PDAQAWLRELLQA---AA--TRREALRAVGLVGDVEAAPWC 274 (410)
T ss_pred hhHHHHHHHHhcC---hh--hHHHHHHHHHHcCCcchHHHH
Confidence 2555555544432 11 334444455555554443333
|
Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown. |
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=89.85 E-value=0.81 Score=37.47 Aligned_cols=86 Identities=14% Similarity=0.192 Sum_probs=58.1
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHhcCChhhHHHHhcccCCCCchhHHHHHHHHHhcCCh
Q 007519 203 MIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQV 282 (600)
Q Consensus 203 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 282 (600)
++..+.+.+.++....+++.+... +...+....+.++..|++.++.++...+++.... .-...++..+.+.|.+
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~---~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~ 86 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKE---NKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLY 86 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHT---STC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhc---ccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchH
Confidence 466667778888888888888854 4445677888899999999888888888884432 3334556666666666
Q ss_pred HHHHHHHhhCCC
Q 007519 283 SNAYYLFHNMPD 294 (600)
Q Consensus 283 ~~A~~~~~~~~~ 294 (600)
++|..++.++..
T Consensus 87 ~~a~~Ly~~~~~ 98 (143)
T PF00637_consen 87 EEAVYLYSKLGN 98 (143)
T ss_dssp HHHHHHHHCCTT
T ss_pred HHHHHHHHHccc
Confidence 666666655443
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=89.59 E-value=3.8 Score=36.84 Aligned_cols=98 Identities=17% Similarity=0.155 Sum_probs=69.2
Q ss_pred HHHHhcCC--CCChhhHHHHHHHHHh-----cCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccC------------
Q 007519 387 YNIFSNMV--SRDLVSWNSMVMGFSH-----HGLANETLKVFESMLESGTHPNSVTFLGILSACSHAG------------ 447 (600)
Q Consensus 387 ~~~~~~~~--~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g------------ 447 (600)
+..|.... +.|-.+|-..+..+.. .+.++-....++.|.+.|+.-|..+|+.|+..+-+..
T Consensus 54 e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~ 133 (406)
T KOG3941|consen 54 EKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFL 133 (406)
T ss_pred hhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHh
Confidence 44455555 4566677777766654 3566767777888888888888888888887764432
Q ss_pred ----chHHHHHHHHHHHhhcCCCCCcchHHHHHHHHhhcCCh
Q 007519 448 ----LVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKI 485 (600)
Q Consensus 448 ----~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 485 (600)
+-+=++.++++|.. +|+.||..+-..|+.++++.+..
T Consensus 134 HYP~QQ~C~I~vLeqME~-hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 134 HYPQQQNCAIKVLEQMEW-HGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred hCchhhhHHHHHHHHHHH-cCCCCchHHHHHHHHHhcccccc
Confidence 22336778888876 48888888888888888877743
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=89.39 E-value=1.7 Score=39.66 Aligned_cols=59 Identities=22% Similarity=0.276 Sum_probs=35.0
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHhhhhCCHHHHHHHHHHHHh
Q 007519 471 HYVSMINLLGRAGKIKEAEEFVLRLP-FEP-DHRIWGALLGACGFCEGNAEIAEHAAKRLLE 530 (600)
Q Consensus 471 ~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~ 530 (600)
++..+++.+...|+++.+.+.++++. ..| +...|..++.++. ..|+...|+..|+++.+
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~-~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYL-VNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHH-HcCCchHHHHHHHHHHH
Confidence 55556666666666666666666553 333 4555666666666 66666666666666555
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=89.35 E-value=10 Score=30.72 Aligned_cols=70 Identities=20% Similarity=0.139 Sum_probs=43.9
Q ss_pred ccCchHHHHHHHHHHHhhcCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhCCCCC-CHHHHHHHHHHHhhhhCC
Q 007519 445 HAGLVSRGWELFNAMFDVYKIQPG-PEHYVSMINLLGRAGKIKEAEEFVLRLPFEP-DHRIWGALLGACGFCEGN 517 (600)
Q Consensus 445 ~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~l~~~~~~~~g~ 517 (600)
..++.+.+..++..+.- +.|+ ...-..-+..+...|+|++|.++++++...+ ....-..+...|....||
T Consensus 22 ~~~d~~D~e~lLdALrv---LrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~D 93 (153)
T TIGR02561 22 RSADPYDAQAMLDALRV---LRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGD 93 (153)
T ss_pred hcCCHHHHHHHHHHHHH---hCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCC
Confidence 46777888888877763 4563 3333334566788899999999998887444 333334455555534444
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=89.34 E-value=32 Score=36.39 Aligned_cols=243 Identities=7% Similarity=-0.060 Sum_probs=122.5
Q ss_pred CCChhHHHHHHHHHHHCC-CCCChh--HHHHHHHHHhcccchhhhHHHHHHHhhhcCCCchhHHHHHHHHHHhcCChHHH
Q 007519 310 NELFVEATYLFMEMRAHG-VPPLNA--TFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNA 386 (600)
Q Consensus 310 ~g~~~~a~~~~~~m~~~g-~~p~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 386 (600)
..+.+.|..++....... ..+... ....+.......+..+.+...+....... .+......-+....+.++++.+
T Consensus 254 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~ 331 (644)
T PRK11619 254 RQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGL 331 (644)
T ss_pred HhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHH
Confidence 455678888888764443 222221 12222222222211344444444332222 2334445555566678888888
Q ss_pred HHHHhcCCC--CChhhH-HHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccCch---HH--HHHHHHH
Q 007519 387 YNIFSNMVS--RDLVSW-NSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLV---SR--GWELFNA 458 (600)
Q Consensus 387 ~~~~~~~~~--~~~~~~-~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~---~~--a~~~~~~ 458 (600)
...+..|.. .+..-| -=+..++...|+.++|...|+.+.. .. +|-.++.+ .+.|.. .. .-.. .
T Consensus 332 ~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~---~~---~fYG~LAa-~~Lg~~~~~~~~~~~~~-~- 402 (644)
T PRK11619 332 NTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ---QR---GFYPMVAA-QRLGEEYPLKIDKAPKP-D- 402 (644)
T ss_pred HHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc---CC---CcHHHHHH-HHcCCCCCCCCCCCCch-h-
Confidence 888888752 111111 1245565667888888888888742 22 23332221 111211 00 0000 0
Q ss_pred HHhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHhhhhCCHHHHHHHHHHHHhh---CCCC
Q 007519 459 MFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLEL---DPLN 535 (600)
Q Consensus 459 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~---~p~~ 535 (600)
. .+ +. ..-..-+..+...|+...|...+..+....+......+..... ..|....++....+.... .-..
T Consensus 403 --~--~~-~~-~~~~~ra~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~A~-~~g~~~~ai~~~~~~~~~~~~~~rf 475 (644)
T PRK11619 403 --S--AL-TQ-GPEMARVRELMYWNMDNTARSEWANLVASRSKTEQAQLARYAF-NQQWWDLSVQATIAGKLWDHLEERF 475 (644)
T ss_pred --h--hh-cc-ChHHHHHHHHHHCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-HCCCHHHHHHHHhhchhHHHHHHhC
Confidence 0 00 00 0112234556778999999888877653445555544444444 788888888777654331 1113
Q ss_pred CCcHHHHhHHHHhhCCcHHHHHHHHHHhhcCCccC
Q 007519 536 APAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKV 570 (600)
Q Consensus 536 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 570 (600)
|..|...+..+.+.-.++.++-.--...|.++.+.
T Consensus 476 p~~~~~~~~~~a~~~~v~~~lv~ai~rqES~f~p~ 510 (644)
T PRK11619 476 PLAWNDEFRRYTSGKGIPQSYAMAIARQESAWNPK 510 (644)
T ss_pred CcchHHHHHHHHHHcCCCHHHHHHHHHHhcCCCCC
Confidence 44566666666666666666643333345555543
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=89.32 E-value=8.5 Score=33.75 Aligned_cols=23 Identities=9% Similarity=-0.185 Sum_probs=17.9
Q ss_pred hhCCHHHHHHHHHHHHhhCCCCC
Q 007519 514 CEGNAEIAEHAAKRLLELDPLNA 536 (600)
Q Consensus 514 ~~g~~~~a~~~~~~~~~~~p~~~ 536 (600)
..+++.+|+.+|++.....-+|+
T Consensus 166 ~leqY~~Ai~iyeqva~~s~~n~ 188 (288)
T KOG1586|consen 166 QLEQYSKAIDIYEQVARSSLDNN 188 (288)
T ss_pred HHHHHHHHHHHHHHHHHHhccch
Confidence 66889999999999887555443
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=89.31 E-value=12 Score=31.34 Aligned_cols=125 Identities=11% Similarity=0.085 Sum_probs=78.2
Q ss_pred CCCCCChhhHHHHHHHHHhcCChhhHHHHhcccCCCCchhHHHHHHHHHhc--CChHHHHHHHhhCCCCChhhHHHHHHH
Q 007519 229 NGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSV--GQVSNAYYLFHNMPDRDAVAWTAMISG 306 (600)
Q Consensus 229 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~A~~~~~~~~~~~~~~~~~li~~ 306 (600)
.+++|+...+..+++.+.+.|++.....++..-.-+|.......+-.+... .-..-|++++.++. ..+..++..
T Consensus 23 ~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~----~~~~~iiev 98 (167)
T PF07035_consen 23 HNIPVQHELYELLIDLLIRNGQFSQLHQLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG----TAYEEIIEV 98 (167)
T ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh----hhHHHHHHH
Confidence 378888889999999999999888887777665544444333332222211 11334455555544 245667778
Q ss_pred HHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhcccchhhhHHHHHHHhhh
Q 007519 307 LVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKT 361 (600)
Q Consensus 307 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 361 (600)
+...|++-+|+++.+..... +......++.+..+.+|...-..+++...+.
T Consensus 99 LL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~ 149 (167)
T PF07035_consen 99 LLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEER 149 (167)
T ss_pred HHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 88999999999988765332 2223355667777777766666666544443
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=89.29 E-value=2.4 Score=38.65 Aligned_cols=72 Identities=11% Similarity=0.202 Sum_probs=51.4
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhcCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHH-----cCCCCChhHHHHH
Q 007519 368 ILENCLISMYAKCGVIDNAYNIFSNMV---SRDLVSWNSMVMGFSHHGLANETLKVFESMLE-----SGTHPNSVTFLGI 439 (600)
Q Consensus 368 ~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~-----~~~~p~~~~~~~l 439 (600)
.++..++..+...|+.+.+.+.++++. +-+...|..++.+|.+.|+...|+..|+.+.+ .|+.|...+....
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 345567777777888888888777776 44667888888888888888888888877765 3666665554433
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=89.24 E-value=58 Score=39.20 Aligned_cols=120 Identities=6% Similarity=-0.010 Sum_probs=74.9
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHhcCChhhHHHHhcc-cCCCCchhHHHHHHHHHhcC
Q 007519 202 AMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDT-VPVRDEISWTSMIDGYLSVG 280 (600)
Q Consensus 202 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~l~~~~~~~~ 280 (600)
.+..+-.+.+.+.+|+-.++.-... +........-|..+...|..-+++|...-+... ... +.. ...+-.....|
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~-ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~--~sl-~~qil~~e~~g 1463 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRST-EKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFAD--PSL-YQQILEHEASG 1463 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccc-cchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcC--ccH-HHHHHHHHhhc
Confidence 4555667788888888888874211 001122233444555588888888877766653 222 222 23344456678
Q ss_pred ChHHHHHHHhhCCC--CC-hhhHHHHHHHHHhCCChhHHHHHHHHHHH
Q 007519 281 QVSNAYYLFHNMPD--RD-AVAWTAMISGLVQNELFVEATYLFMEMRA 325 (600)
Q Consensus 281 ~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 325 (600)
++..|...|+.+.. |+ ..+++.++......|.++.++-..+-...
T Consensus 1464 ~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~ 1511 (2382)
T KOG0890|consen 1464 NWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLII 1511 (2382)
T ss_pred cHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhh
Confidence 88888888888876 33 55777777777777777777765554443
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.93 E-value=17 Score=32.62 Aligned_cols=73 Identities=12% Similarity=-0.048 Sum_probs=40.2
Q ss_pred HHHHhCCChhHHHHHHHHHHHCC--CCCChhHHHHHHHHHhcccchhhhHHHHHHHhhhcCCCchhHHHHHHHHH
Q 007519 305 SGLVQNELFVEATYLFMEMRAHG--VPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMY 377 (600)
Q Consensus 305 ~~~~~~g~~~~a~~~~~~m~~~g--~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 377 (600)
..-.+.|++++|...|+.+..+. -+-...+...++-++.+.++.+.|....++..+.-......-|...+.++
T Consensus 42 ~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgL 116 (254)
T COG4105 42 LTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGL 116 (254)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHH
Confidence 33456778888888888777652 11123344445556666667777766666555544333333333344333
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=88.86 E-value=20 Score=33.50 Aligned_cols=140 Identities=14% Similarity=0.128 Sum_probs=73.6
Q ss_pred hhHHHHHHHHHHHCCCCCChhHHHHHHHHHhc--cc----chhhhHHHHHHHhhhcCCCchhHHHHHHHHHHhcCChHHH
Q 007519 313 FVEATYLFMEMRAHGVPPLNATFSVLFGAAGA--TA----NIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNA 386 (600)
Q Consensus 313 ~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~--~~----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 386 (600)
+++.+.+++.|.+.|..-+..+|.+....... .. ....+..+++.|.+...-.+
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLT-------------------- 137 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLT-------------------- 137 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCcccc--------------------
Confidence 34567788888888888877766553333222 11 23344555555554332100
Q ss_pred HHHHhcCCCCChhhHHHHHHHHHhcCC----hHHHHHHHHHHHHcCCCCChh--HHHHHHHHhcccCc--hHHHHHHHHH
Q 007519 387 YNIFSNMVSRDLVSWNSMVMGFSHHGL----ANETLKVFESMLESGTHPNSV--TFLGILSACSHAGL--VSRGWELFNA 458 (600)
Q Consensus 387 ~~~~~~~~~~~~~~~~~l~~~~~~~~~----~~~a~~~~~~m~~~~~~p~~~--~~~~l~~~~~~~g~--~~~a~~~~~~ 458 (600)
.++-.++..++.. ..++ .+.+..+|+.+.+.|+..+.. ....++..+..... ..++.++++.
T Consensus 138 --------s~~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~ 207 (297)
T PF13170_consen 138 --------SPEDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNA 207 (297)
T ss_pred --------CccchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHH
Confidence 1111222222211 1111 356677788888877766543 33333333322222 4567788887
Q ss_pred HHhhcCCCCCcchHHHHHHHHhhcC
Q 007519 459 MFDVYKIQPGPEHYVSMINLLGRAG 483 (600)
Q Consensus 459 ~~~~~~~~p~~~~~~~l~~~~~~~g 483 (600)
+.+. ++++....|..++-.-.-.+
T Consensus 208 l~~~-~~kik~~~yp~lGlLall~~ 231 (297)
T PF13170_consen 208 LKKN-GVKIKYMHYPTLGLLALLED 231 (297)
T ss_pred HHHc-CCccccccccHHHHHHhcCC
Confidence 7775 88877767776655443333
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=88.37 E-value=6.8 Score=32.53 Aligned_cols=56 Identities=9% Similarity=0.131 Sum_probs=35.3
Q ss_pred HHhcCChHHHHHHHhcCCCC-C---hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 007519 377 YAKCGVIDNAYNIFSNMVSR-D---LVSWNSMVMGFSHHGLANETLKVFESMLESGTHPN 432 (600)
Q Consensus 377 ~~~~~~~~~A~~~~~~~~~~-~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~ 432 (600)
+...|.++......+.+..+ + ...-..|.-+-.+.|++.+|.+.|..+......|.
T Consensus 142 LvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~apr 201 (221)
T COG4649 142 LVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAPR 201 (221)
T ss_pred HhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCcH
Confidence 45667777777666666522 1 22334566666778888888888888776544443
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=87.48 E-value=1.3 Score=24.86 Aligned_cols=27 Identities=22% Similarity=0.091 Sum_probs=17.6
Q ss_pred HHHHHhhhhCCHHHHHHHHHHHHhhCCC
Q 007519 507 LLGACGFCEGNAEIAEHAAKRLLELDPL 534 (600)
Q Consensus 507 l~~~~~~~~g~~~~a~~~~~~~~~~~p~ 534 (600)
+..++. ..|+.++|+..++++++..|+
T Consensus 6 ~a~~~~-~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 6 LARCYY-KLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHH-HHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHH-HccCHHHHHHHHHHHHHHCcC
Confidence 344445 667777777777777777663
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=87.33 E-value=1.4 Score=26.45 Aligned_cols=27 Identities=26% Similarity=0.201 Sum_probs=13.0
Q ss_pred HHHHHHHHHhhhhCCHHHHHHHHHHHHh
Q 007519 503 IWGALLGACGFCEGNAEIAEHAAKRLLE 530 (600)
Q Consensus 503 ~~~~l~~~~~~~~g~~~~a~~~~~~~~~ 530 (600)
+++.+...+. ..|++++|+.+++++++
T Consensus 4 ~~~~la~~~~-~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 4 ALNNLANAYR-AQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHH-HCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-hhhhcchhhHHHHHHHH
Confidence 3444444444 45555555555555544
|
|
| >KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=87.20 E-value=2.8 Score=41.77 Aligned_cols=101 Identities=18% Similarity=0.094 Sum_probs=77.8
Q ss_pred hcccCchHHHHHHHHHHHhhcCCCC--CcchHHHHHHHHhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHhhhhCCH
Q 007519 443 CSHAGLVSRGWELFNAMFDVYKIQP--GPEHYVSMINLLGRAGKIKEAEEFVLRLP--FEPDHRIWGALLGACGFCEGNA 518 (600)
Q Consensus 443 ~~~~g~~~~a~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~g~~ 518 (600)
+...|+...|..++..+.. ..| .......|+..+.+.|...+|-.++.... ..-.+.++..+.+++. ...++
T Consensus 617 wr~~gn~~~a~~cl~~a~~---~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l-~l~~i 692 (886)
T KOG4507|consen 617 WRAVGNSTFAIACLQRALN---LAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYL-ALKNI 692 (886)
T ss_pred eeecCCcHHHHHHHHHHhc---cChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHH-HHhhh
Confidence 3456899999999988764 355 34566778888889998889988876643 3334556777778888 88999
Q ss_pred HHHHHHHHHHHhhCCCCCCcHHHHhHHHH
Q 007519 519 EIAEHAAKRLLELDPLNAPAHVVLCNIYA 547 (600)
Q Consensus 519 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 547 (600)
+.|++.++++.++.|+++.+-..|..+-+
T Consensus 693 ~~a~~~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 693 SGALEAFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred HHHHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence 99999999999999998888777655433
|
|
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=87.19 E-value=0.83 Score=24.27 Aligned_cols=24 Identities=25% Similarity=0.259 Sum_probs=19.0
Q ss_pred CcHHHHhHHHHhhCCcHHHHHHHH
Q 007519 537 PAHVVLCNIYAASGRHVEEHKLRM 560 (600)
Q Consensus 537 ~~~~~l~~~~~~~g~~~~A~~~~~ 560 (600)
.....++.++...|++++|..+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 456678888899999999888664
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >TIGR02508 type_III_yscG type III secretion protein, YscG family | Back alignment and domain information |
|---|
Probab=87.13 E-value=8.9 Score=28.46 Aligned_cols=60 Identities=20% Similarity=0.198 Sum_probs=42.2
Q ss_pred HHHHhcCChHHHHHHHhhCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHH
Q 007519 274 DGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFS 336 (600)
Q Consensus 274 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~ 336 (600)
..+...|++++|..+.+.+..||...|.++.. .+.|..+....-+.+|..+| .|....|.
T Consensus 47 sSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg-~p~lq~Fa 106 (115)
T TIGR02508 47 SSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAASG-DPRLQTFV 106 (115)
T ss_pred HHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC-CHHHHHHH
Confidence 45667788888888888887788888776653 46677777777777777776 45444443
|
YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc. |
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=87.03 E-value=14 Score=30.90 Aligned_cols=115 Identities=10% Similarity=0.138 Sum_probs=52.2
Q ss_pred CCcchHHHHHHHHHcCCChhHHHHHhhhcCCCChhhHHHHHHHHHhcC--ChHHHHHHhhcCCCCCceeHHHHHHHHHHC
Q 007519 40 RNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAG--RVCEARKLFEEMPERNVVSWNSMVVGLIRN 117 (600)
Q Consensus 40 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~ 117 (600)
++...+..+++.+.+.|++.....++.--.=+|.......+-.+.... -..-|.+.+.++. ..+..++..+...
T Consensus 27 ~~~~L~~lli~lLi~~~~~~~L~qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~----~~~~~iievLL~~ 102 (167)
T PF07035_consen 27 VQHELYELLIDLLIRNGQFSQLHQLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG----TAYEEIIEVLLSK 102 (167)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh----hhHHHHHHHHHhC
Confidence 455556666666666666666555554433333332222221111110 0122223333222 2344455556666
Q ss_pred CChhHHHHHhhcCCCCCcccHHHHHHHHHhcCCHhHHHHHH
Q 007519 118 GELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLF 158 (600)
Q Consensus 118 ~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 158 (600)
|++-+|++..+.....+......++.+..+.+|...--.++
T Consensus 103 g~vl~ALr~ar~~~~~~~~~~~~fLeAA~~~~D~~lf~~V~ 143 (167)
T PF07035_consen 103 GQVLEALRYARQYHKVDSVPARKFLEAAANSNDDQLFYAVF 143 (167)
T ss_pred CCHHHHHHHHHHcCCcccCCHHHHHHHHHHcCCHHHHHHHH
Confidence 66666666665544433334444555555555544333333
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=86.98 E-value=79 Score=38.16 Aligned_cols=310 Identities=13% Similarity=0.046 Sum_probs=165.5
Q ss_pred HHHHHHHhcCChhhHHHHhcccC----CC--CchhHHHHHHHHHhcCChHHHHHHHhh-CCCCChhhHHHHHHHHHhCCC
Q 007519 240 SMINGYIRFGRLEEAQNLFDTVP----VR--DEISWTSMIDGYLSVGQVSNAYYLFHN-MPDRDAVAWTAMISGLVQNEL 312 (600)
Q Consensus 240 ~l~~~~~~~~~~~~a~~~~~~~~----~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~-~~~~~~~~~~~li~~~~~~g~ 312 (600)
.+..+-.+.+.+.+|...++.-. +. ....+..+...|...+++|....+... ...++. ..-|.-....|+
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~sl---~~qil~~e~~g~ 1464 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADPSL---YQQILEHEASGN 1464 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCccH---HHHHHHHHhhcc
Confidence 34445567788888888888731 11 222344555589999999988887773 333332 234445677899
Q ss_pred hhHHHHHHHHHHHCCCCCChhHHHHHHHHHhcccchhhhHHHHHHHhhhcCCCchhHHHHHHHHHHhcCChHHHHHHHhc
Q 007519 313 FVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSN 392 (600)
Q Consensus 313 ~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 392 (600)
+..|...|+.+.+.+ ++...+++-++......+.+.......+-......+-....++.=+.+--+.++++.......
T Consensus 1465 ~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l~qwD~~e~~l~- 1542 (2382)
T KOG0890|consen 1465 WADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRLSQWDLLESYLS- 1542 (2382)
T ss_pred HHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhhcchhhhhhhhh-
Confidence 999999999999874 334667877777766677776666544433322222122223333444466777776666655
Q ss_pred CCCCChhhHHHH--HHHHHhc--CChHHHHHHHHHHHHcCCCCCh---------hHHHHHHHHhcccCchHHHHHHHHHH
Q 007519 393 MVSRDLVSWNSM--VMGFSHH--GLANETLKVFESMLESGTHPNS---------VTFLGILSACSHAGLVSRGWELFNAM 459 (600)
Q Consensus 393 ~~~~~~~~~~~l--~~~~~~~--~~~~~a~~~~~~m~~~~~~p~~---------~~~~~l~~~~~~~g~~~~a~~~~~~~ 459 (600)
..+..+|... +..+.+. .+.-.-.+.++.+++.-+.|=. ..|..++....- .++-...
T Consensus 1543 --~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l-------~el~~~~ 1613 (2382)
T KOG0890|consen 1543 --DRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLL-------LELENSI 1613 (2382)
T ss_pred --cccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHH-------HHHHHHH
Confidence 4455555554 2222222 1221222333333332111100 112222221110 1111111
Q ss_pred HhhcCCCCCc------chHHHHHHHHhhcCChHHHHHHHHhC----CCCC-----CHHHHHHHHHHHhhhhCCHHHHHHH
Q 007519 460 FDVYKIQPGP------EHYVSMINLLGRAGKIKEAEEFVLRL----PFEP-----DHRIWGALLGACGFCEGNAEIAEHA 524 (600)
Q Consensus 460 ~~~~~~~p~~------~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p-----~~~~~~~l~~~~~~~~g~~~~a~~~ 524 (600)
....+..++. ..|..-+..-....+..+-.-.+++. ...| -..+|......++ ..|..+.|-..
T Consensus 1614 ~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR-~aG~~q~A~na 1692 (2382)
T KOG0890|consen 1614 EELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIAR-LAGHLQRAQNA 1692 (2382)
T ss_pred HHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHH-hcccHHHHHHH
Confidence 1111333321 11222221111111122211111111 1222 2456777777787 88999998888
Q ss_pred HHHHHhhCCCCCCcHHHHhHHHHhhCCcHHHHHHHHHHhhcC
Q 007519 525 AKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKG 566 (600)
Q Consensus 525 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 566 (600)
.-.+.+..+ +.++.-.+..+...|+...|..+++...+..
T Consensus 1693 ll~A~e~r~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1693 LLNAKESRL--PEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred HHhhhhccc--chHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 877777664 6778888888999999999999776665443
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=86.75 E-value=47 Score=35.29 Aligned_cols=174 Identities=11% Similarity=0.042 Sum_probs=83.4
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHhcccCCc---hhHHHHHHHHHhcCChhHHHHHHccCCC-CCcchHHHHHHHHHhcCCh
Q 007519 138 WNAMIAGYVECCMMGEAIVLFEEMEERNV---VTWTSMISGYCRAGEVEEGYCLFRRMPR-KNVVSWTAMIGGFAWNGFH 213 (600)
Q Consensus 138 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~~~~ 213 (600)
...-+..+.+...++-|..+.+.-.-+.. .......+.+.+.|++++|...|-+-.. -++ ..+|.-|......
T Consensus 337 le~kL~iL~kK~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~---s~Vi~kfLdaq~I 413 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEP---SEVIKKFLDAQRI 413 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCCh---HHHHHHhcCHHHH
Confidence 33444445555555555555443221111 1222333445566777777766554332 111 1244555555555
Q ss_pred hHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHhcCChhhHHHHhcccCCCCchh--HHHHHHHHHhcCChHHHHHHHhh
Q 007519 214 KESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEIS--WTSMIDGYLSVGQVSNAYYLFHN 291 (600)
Q Consensus 214 ~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~A~~~~~~ 291 (600)
..-..+++.+.+. |.. +...-..|+.+|.+.++.++-.++.+... ..... .-..+..+.+.+-.++|..+-..
T Consensus 414 knLt~YLe~L~~~---gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~~fd~e~al~Ilr~snyl~~a~~LA~k 488 (933)
T KOG2114|consen 414 KNLTSYLEALHKK---GLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEWFFDVETALEILRKSNYLDEAELLATK 488 (933)
T ss_pred HHHHHHHHHHHHc---ccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-CcceeeeHHHHHHHHHHhChHHHHHHHHHH
Confidence 5555566666543 433 33334566777777777777666666554 11111 23344444455555555444333
Q ss_pred CCCCChhhHHHHHHHHHhCCChhHHHHHHHHH
Q 007519 292 MPDRDAVAWTAMISGLVQNELFVEATYLFMEM 323 (600)
Q Consensus 292 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 323 (600)
... +..... -.+...+++++|++.+..+
T Consensus 489 ~~~-he~vl~---ille~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 489 FKK-HEWVLD---ILLEDLHNYEEALRYISSL 516 (933)
T ss_pred hcc-CHHHHH---HHHHHhcCHHHHHHHHhcC
Confidence 322 122222 2233456666666666543
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=86.36 E-value=51 Score=35.34 Aligned_cols=50 Identities=14% Similarity=0.085 Sum_probs=25.2
Q ss_pred hcCChHHHHHHHHHHHHcCCC-----CChhHHHHHHHHhcccCchHHHHHHHHHHH
Q 007519 410 HHGLANETLKVFESMLESGTH-----PNSVTFLGILSACSHAGLVSRGWELFNAMF 460 (600)
Q Consensus 410 ~~~~~~~a~~~~~~m~~~~~~-----p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 460 (600)
..|++++|+++.+..... ++ +....+..+..+..-.|++++|..+.+...
T Consensus 470 ~~~~~e~a~~lar~al~~-L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~ 524 (894)
T COG2909 470 NRGDPEEAEDLARLALVQ-LPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAE 524 (894)
T ss_pred hcCCHHHHHHHHHHHHHh-cccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHH
Confidence 455666666666555543 12 122333344444455566666665555444
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=86.21 E-value=1.3 Score=40.70 Aligned_cols=81 Identities=20% Similarity=0.067 Sum_probs=65.8
Q ss_pred HHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCCcHHHHhHHHHhhCCcH
Q 007519 476 INLLGRAGKIKEAEEFVLRL-PFEP-DHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHV 553 (600)
Q Consensus 476 ~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 553 (600)
+.-|.++|++++|+..|.+. -..| ++.++..-..+|. +...+..|+.-...++.++-....+|..-+.+-...|+..
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYl-k~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~ 182 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYL-KQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNM 182 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHH-HHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHH
Confidence 45688999999999999875 4667 6777777778888 9999999999999999988766677777777777777777
Q ss_pred HHHH
Q 007519 554 EEHK 557 (600)
Q Consensus 554 ~A~~ 557 (600)
+|.+
T Consensus 183 EAKk 186 (536)
T KOG4648|consen 183 EAKK 186 (536)
T ss_pred HHHH
Confidence 7776
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=86.14 E-value=13 Score=37.42 Aligned_cols=98 Identities=14% Similarity=0.188 Sum_probs=45.6
Q ss_pred hcCChHHHHHHHhhCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhcccchhhhHHHHHH
Q 007519 278 SVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCV 357 (600)
Q Consensus 278 ~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 357 (600)
+.|+++.|.++..+. .+..-|..|..+..+.|++..|.+.|..... |..|+-.+...|+-+....+-..
T Consensus 649 ~lgrl~iA~~la~e~--~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~ 717 (794)
T KOG0276|consen 649 KLGRLDIAFDLAVEA--NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASL 717 (794)
T ss_pred hcCcHHHHHHHHHhh--cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHH
Confidence 344444444443322 2334455555555566666666555554432 23344444444444444333333
Q ss_pred HhhhcCCCchhHHHHHHHHHHhcCChHHHHHHHhc
Q 007519 358 LMKTESESDLILENCLISMYAKCGVIDNAYNIFSN 392 (600)
Q Consensus 358 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 392 (600)
..+.|.. |....+|...|+++++.+++.+
T Consensus 718 ~~~~g~~------N~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 718 AKKQGKN------NLAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred HHhhccc------chHHHHHHHcCCHHHHHHHHHh
Confidence 3333322 2233345556666666655543
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=85.90 E-value=35 Score=32.98 Aligned_cols=59 Identities=10% Similarity=0.044 Sum_probs=35.0
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhcCCCC-------ChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 007519 368 ILENCLISMYAKCGVIDNAYNIFSNMVSR-------DLVSWNSMVMGFSHHGLANETLKVFESMLE 426 (600)
Q Consensus 368 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 426 (600)
.++..++..+.+.|.++.|...+..+... .+...-.-+..+...|+..+|+..++....
T Consensus 147 ~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 147 ETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34455556666666666666666655421 233344445566667777777777776665
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=85.73 E-value=4.7 Score=29.68 Aligned_cols=62 Identities=15% Similarity=0.163 Sum_probs=45.4
Q ss_pred ChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCCCcchHHHHH
Q 007519 413 LANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMI 476 (600)
Q Consensus 413 ~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~ 476 (600)
+.-++.+-++.+....+.|++....+.+++|-+.+++..|.++++-++.+.+ .+...|..++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~--~~~~~y~~~l 83 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCG--AHKEIYPYIL 83 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--CchhhHHHHH
Confidence 4456667777777777888888888889999999999999999887775422 2344555554
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PRK12798 chemotaxis protein; Reviewed | Back alignment and domain information |
|---|
Probab=85.55 E-value=37 Score=32.98 Aligned_cols=181 Identities=15% Similarity=0.197 Sum_probs=110.2
Q ss_pred cCChHHHHHHHhcCC----CCChhhHHHHHHH-HHhcCChHHHHHHHHHHHHcCCCCCh----hHHHHHHHHhcccCchH
Q 007519 380 CGVIDNAYNIFSNMV----SRDLVSWNSMVMG-FSHHGLANETLKVFESMLESGTHPNS----VTFLGILSACSHAGLVS 450 (600)
Q Consensus 380 ~~~~~~A~~~~~~~~----~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~m~~~~~~p~~----~~~~~l~~~~~~~g~~~ 450 (600)
.|+.++|.+.+..+. ++....+-.|+.+ .....+..+|+.+|+...-. -|.. .....-+......|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLl--aPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLL--APGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHh--CCchHHHHHHHHHhhHHHHhcCcHH
Confidence 588888888888876 3445566666655 44566788899998887642 3432 23333444567888999
Q ss_pred HHHHHHHHHHhhcCCCCCcchHH-HHHHHHhhcC---ChHHHHHHHHhCCCCCCHHHHHHHHHHHhhhhCCHHHHHHHHH
Q 007519 451 RGWELFNAMFDVYKIQPGPEHYV-SMINLLGRAG---KIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAK 526 (600)
Q Consensus 451 ~a~~~~~~~~~~~~~~p~~~~~~-~l~~~~~~~g---~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~g~~~~a~~~~~ 526 (600)
++..+-.....++.-.|-...|. .+...+.+.+ ..+.-..++..|.-.-....|..+..... ..|+.+.|....+
T Consensus 203 rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Al-i~Gk~~lA~~As~ 281 (421)
T PRK12798 203 KFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAAL-IDGKTELARFASE 281 (421)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHH-HcCcHHHHHHHHH
Confidence 88888887777766666433332 2333333333 33444455555542223456777777777 7899999999999
Q ss_pred HHHhhCCCCCCcHHHHhHHHH-----hhCCcHHHHHHHHHHhh
Q 007519 527 RLLELDPLNAPAHVVLCNIYA-----ASGRHVEEHKLRMDMGL 564 (600)
Q Consensus 527 ~~~~~~p~~~~~~~~l~~~~~-----~~g~~~~A~~~~~~~~~ 564 (600)
++..+.. ....-...+..|. -..++++|.+.+..+.+
T Consensus 282 ~A~~L~~-~~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I~~ 323 (421)
T PRK12798 282 RALKLAD-PDSADAARARLYRGAALVASDDAESALEELSQIDR 323 (421)
T ss_pred HHHHhcc-CCCcchHHHHHHHHHHccCcccHHHHHHHHhcCCh
Confidence 9988764 3333333333332 23556666665555443
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=85.15 E-value=32 Score=31.96 Aligned_cols=61 Identities=11% Similarity=0.001 Sum_probs=29.7
Q ss_pred hHHHHHHHHHhcCChH---HHHHHHHHHHHcCCCCC-hhHHHHHHHHhcccCchHHHHHHHHHHHhh
Q 007519 400 SWNSMVMGFSHHGLAN---ETLKVFESMLESGTHPN-SVTFLGILSACSHAGLVSRGWELFNAMFDV 462 (600)
Q Consensus 400 ~~~~l~~~~~~~~~~~---~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 462 (600)
+...++.+|...+..+ +|..+++.+... -|+ ...+..-+..+.+.++.+.+.+.+.+|...
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e--~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESE--YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHh--CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 3444555555544433 344444444332 122 233333344555566666666666666653
|
It is also involved in sporulation []. |
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=85.14 E-value=3.9 Score=30.41 Aligned_cols=61 Identities=13% Similarity=0.170 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHcCCCCChhHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCCCcchHHHHHH
Q 007519 415 NETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMIN 477 (600)
Q Consensus 415 ~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 477 (600)
-+..+-++.+....+.|++......+.+|.+.+++..|.++|+-++.+.+ +....|..++.
T Consensus 27 we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~--~~~~~Y~~~lq 87 (108)
T PF02284_consen 27 WELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG--NKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT--T-TTHHHHHHH
T ss_pred HHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--ChHHHHHHHHH
Confidence 35666666666677888888888888888888888888888888876533 33336666553
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=84.72 E-value=2.4 Score=24.07 Aligned_cols=29 Identities=10% Similarity=0.085 Sum_probs=22.0
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHHHhh
Q 007519 198 VSWTAMIGGFAWNGFHKESLLLFIEMKGI 226 (600)
Q Consensus 198 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 226 (600)
.+|..+...+...|++++|+..|++.++.
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 35677788888888888888888888765
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=84.06 E-value=1.9 Score=22.87 Aligned_cols=22 Identities=23% Similarity=0.268 Sum_probs=13.5
Q ss_pred HHHHHHHHhhcCChHHHHHHHH
Q 007519 472 YVSMINLLGRAGKIKEAEEFVL 493 (600)
Q Consensus 472 ~~~l~~~~~~~g~~~~A~~~~~ 493 (600)
...++.++...|++++|..+++
T Consensus 4 ~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 4 RLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHcCCHHHHHHHHh
Confidence 3445666666666666666654
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=83.86 E-value=18 Score=36.61 Aligned_cols=47 Identities=13% Similarity=0.155 Sum_probs=24.2
Q ss_pred HHhcCChhHHHHHHccCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHH
Q 007519 176 YCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMK 224 (600)
Q Consensus 176 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 224 (600)
..+.|+++.|.++..+. .+..-|..|.++....+++..|.++|....
T Consensus 647 al~lgrl~iA~~la~e~--~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~ 693 (794)
T KOG0276|consen 647 ALKLGRLDIAFDLAVEA--NSEVKWRQLGDAALSAGELPLASECFLRAR 693 (794)
T ss_pred hhhcCcHHHHHHHHHhh--cchHHHHHHHHHHhhcccchhHHHHHHhhc
Confidence 34445555555544332 233445555555555566555555555544
|
|
| >TIGR03504 FimV_Cterm FimV C-terminal domain | Back alignment and domain information |
|---|
Probab=83.28 E-value=2.1 Score=26.37 Aligned_cols=27 Identities=19% Similarity=0.207 Sum_probs=22.5
Q ss_pred HHHhHHHHhhCCcHHHHHHHHHHhhcC
Q 007519 540 VVLCNIYAASGRHVEEHKLRMDMGLKG 566 (600)
Q Consensus 540 ~~l~~~~~~~g~~~~A~~~~~~~~~~~ 566 (600)
..|+.+|...|+.+.|.++++++...|
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 468899999999999999888877544
|
This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems. |
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=82.51 E-value=13 Score=31.95 Aligned_cols=74 Identities=12% Similarity=0.114 Sum_probs=40.4
Q ss_pred hHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccCchHHHHHHHHHHHhhcCC--CCCcchHHHHHHHHhhcCChHHH
Q 007519 414 ANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKI--QPGPEHYVSMINLLGRAGKIKEA 488 (600)
Q Consensus 414 ~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A 488 (600)
-++|...|-.+...+.--+.. ....+..|....+.++++.++.++.+...- .+|+..+.+|+..|.+.|+++.|
T Consensus 122 d~~A~~~fL~~E~~~~l~t~e-lq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 122 DQEALRRFLQLEGTPELETAE-LQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred cHHHHHHHHHHcCCCCCCCHH-HHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 355666666665554333333 333333333456666666666666654322 34566666777777666666665
|
|
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=82.04 E-value=3.6 Score=22.25 Aligned_cols=29 Identities=31% Similarity=0.182 Sum_probs=17.2
Q ss_pred HHHHHHHHhhhhCCHHHHHHHHHHHHhhCC
Q 007519 504 WGALLGACGFCEGNAEIAEHAAKRLLELDP 533 (600)
Q Consensus 504 ~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p 533 (600)
+..+...+. ..|+++.|+..++++++..|
T Consensus 4 ~~~~a~~~~-~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 4 LYNLGNAYL-KLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHH-HHhhHHHHHHHHHHHHccCC
Confidence 334444444 66666666666666666655
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=82.02 E-value=3.5 Score=23.22 Aligned_cols=28 Identities=14% Similarity=0.217 Sum_probs=20.3
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhh
Q 007519 199 SWTAMIGGFAWNGFHKESLLLFIEMKGI 226 (600)
Q Consensus 199 ~~~~li~~~~~~~~~~~a~~~~~~~~~~ 226 (600)
.|..+...+...|++++|++.|++..+.
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 4566777778888888888888887765
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=81.83 E-value=36 Score=30.07 Aligned_cols=19 Identities=32% Similarity=0.438 Sum_probs=10.3
Q ss_pred CCHHHHHHHHHHHHhhCCC
Q 007519 516 GNAEIAEHAAKRLLELDPL 534 (600)
Q Consensus 516 g~~~~a~~~~~~~~~~~p~ 534 (600)
.|.-.+...+++-.+++|.
T Consensus 209 ~D~v~a~~ALeky~~~dP~ 227 (288)
T KOG1586|consen 209 ADEVNAQRALEKYQELDPA 227 (288)
T ss_pred ccHHHHHHHHHHHHhcCCc
Confidence 4555555555555555654
|
|
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=81.82 E-value=4.5 Score=35.49 Aligned_cols=118 Identities=14% Similarity=0.085 Sum_probs=69.4
Q ss_pred HhcccCchHHHHHHHHHHHhhcCCCCCc-chHHHHHHHHhhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHhhhhCCHH
Q 007519 442 ACSHAGLVSRGWELFNAMFDVYKIQPGP-EHYVSMINLLGRAGKIKEAEEFVLRL-PFEPDHRIWGALLGACGFCEGNAE 519 (600)
Q Consensus 442 ~~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~g~~~ 519 (600)
.|.....++.|+..+.+.+ .+.|+. .-|..=+..+.+..+++.+..--.+. .+.|+..--...++.+......++
T Consensus 19 k~f~~k~y~~ai~~y~raI---~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~ 95 (284)
T KOG4642|consen 19 KCFIPKRYDDAIDCYSRAI---CINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYD 95 (284)
T ss_pred cccchhhhchHHHHHHHHH---hcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhcccc
Confidence 4556667888888777776 346764 44455666677777777776554443 467776665666655543677788
Q ss_pred HHHHHHHHHHhhCCC-----CCCcHHHHhHHHHhhCCcHHHHHHHHHH
Q 007519 520 IAEHAAKRLLELDPL-----NAPAHVVLCNIYAASGRHVEEHKLRMDM 562 (600)
Q Consensus 520 ~a~~~~~~~~~~~p~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 562 (600)
+|+..++++.++.-. -..+...|..+-...=...+..++++..
T Consensus 96 eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~~ 143 (284)
T KOG4642|consen 96 EAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQEL 143 (284)
T ss_pred HHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHHh
Confidence 888888887653211 2233444444333333334444455443
|
|
| >KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=81.73 E-value=1 Score=41.50 Aligned_cols=108 Identities=19% Similarity=0.162 Sum_probs=45.5
Q ss_pred ccCchHHHHHHHHHHHhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhCC-CCCCHH-HHHHHHHHHhhhhCCHHHH
Q 007519 445 HAGLVSRGWELFNAMFDVYKIQP-GPEHYVSMINLLGRAGKIKEAEEFVLRLP-FEPDHR-IWGALLGACGFCEGNAEIA 521 (600)
Q Consensus 445 ~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~-~~~~l~~~~~~~~g~~~~a 521 (600)
..|.++.|++.|-..+.. .| ....|..-..++.+.++...|++=++... +.||.. .|-.-..+-. ..|++++|
T Consensus 126 n~G~~~~ai~~~t~ai~l---np~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~r-llg~~e~a 201 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIEL---NPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAER-LLGNWEEA 201 (377)
T ss_pred cCcchhhhhccccccccc---CCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHH-HhhchHHH
Confidence 344555555555554432 23 23344444444555555555554444432 333322 1222222222 34555555
Q ss_pred HHHHHHHHhhCCCCCCcHHHHhHHHHhhCCcHHHHH
Q 007519 522 EHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHK 557 (600)
Q Consensus 522 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 557 (600)
...+..+.+++- +..+-..|-.+.-+.+..++-..
T Consensus 202 a~dl~~a~kld~-dE~~~a~lKeV~p~a~ki~e~~~ 236 (377)
T KOG1308|consen 202 AHDLALACKLDY-DEANSATLKEVFPNAGKIEEHRR 236 (377)
T ss_pred HHHHHHHHhccc-cHHHHHHHHHhccchhhhhhchh
Confidence 555555555444 33333333333333344333333
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=81.53 E-value=11 Score=31.61 Aligned_cols=45 Identities=18% Similarity=0.226 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHhhCCCCCCcHHHHhHHHHhhCCcHHHHHHHHHHhhcCCcc
Q 007519 518 AEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRK 569 (600)
Q Consensus 518 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 569 (600)
+++|...|+++...+| +-..|..-+... ++|-++..++.+.+...
T Consensus 96 F~kA~~~FqkAv~~~P-~ne~Y~ksLe~~------~kap~lh~e~~~~~~~~ 140 (186)
T PF06552_consen 96 FEKATEYFQKAVDEDP-NNELYRKSLEMA------AKAPELHMEIHKQGLGQ 140 (186)
T ss_dssp HHHHHHHHHHHHHH-T-T-HHHHHHHHHH------HTHHHHHHHHHHSSS--
T ss_pred HHHHHHHHHHHHhcCC-CcHHHHHHHHHH------HhhHHHHHHHHHHHhhh
Confidence 5677888888888999 444554443333 35666776666665443
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=81.49 E-value=36 Score=29.76 Aligned_cols=124 Identities=14% Similarity=0.175 Sum_probs=74.4
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCCC----cchHHHH
Q 007519 400 SWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPG----PEHYVSM 475 (600)
Q Consensus 400 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l 475 (600)
+.+..++.+.+.+...+++...++-.+.+ +.+..+-..+++.++-.|++++|..-++-+.+ +.|+ ...|..+
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~---l~p~~t~~a~lyr~l 78 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAAT---LSPQDTVGASLYRHL 78 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhh---cCcccchHHHHHHHH
Confidence 34455677888888999999888777652 33445555677889999999999988877654 3554 3444444
Q ss_pred HHHHhhcCChHHHHH-HHHh--CC---CCCCHHHHHHHHHHHhhhh-CCHHHHHHHHHHHHhhCCC
Q 007519 476 INLLGRAGKIKEAEE-FVLR--LP---FEPDHRIWGALLGACGFCE-GNAEIAEHAAKRLLELDPL 534 (600)
Q Consensus 476 ~~~~~~~g~~~~A~~-~~~~--~~---~~p~~~~~~~l~~~~~~~~-g~~~~a~~~~~~~~~~~p~ 534 (600)
+.+ +.+.. +|.- -+ ..|.+.-...+..+...+. |.-+.+..+-+++++..|.
T Consensus 79 ir~-------ea~R~evfag~~~Pgflg~p~p~wva~L~aala~h~dg~gea~~alreqal~aa~~ 137 (273)
T COG4455 79 IRC-------EAARNEVFAGGAVPGFLGGPSPEWVAALLAALALHSDGAGEARTALREQALKAAPV 137 (273)
T ss_pred HHH-------HHHHHHHhccCCCCCCcCCCCHHHHHHHHHHHhcccCCcchHHHHHHHHHHhhCCC
Confidence 432 23332 2321 12 2233333344444433233 4556567777788887773
|
|
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=81.26 E-value=3.8 Score=26.47 Aligned_cols=31 Identities=32% Similarity=0.243 Sum_probs=23.4
Q ss_pred HHHHHhhhhCCHHHHHHHHHHHHhhCCCCCCc
Q 007519 507 LLGACGFCEGNAEIAEHAAKRLLELDPLNAPA 538 (600)
Q Consensus 507 l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 538 (600)
+.-++. +.|+++.|.+..+.+++.+|+|..+
T Consensus 7 lAig~y-kl~~Y~~A~~~~~~lL~~eP~N~Qa 37 (53)
T PF14853_consen 7 LAIGHY-KLGEYEKARRYCDALLEIEPDNRQA 37 (53)
T ss_dssp HHHHHH-HTT-HHHHHHHHHHHHHHTTS-HHH
T ss_pred HHHHHH-HhhhHHHHHHHHHHHHhhCCCcHHH
Confidence 334556 8999999999999999999965543
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=81.17 E-value=11 Score=27.83 Aligned_cols=60 Identities=10% Similarity=0.019 Sum_probs=42.4
Q ss_pred hhHHHHHHHHHHHCCCCCChhHHHHHHHHHhcccchhhhHHHHHHHh-hhcCCCchhHHHHHH
Q 007519 313 FVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLM-KTESESDLILENCLI 374 (600)
Q Consensus 313 ~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~l~ 374 (600)
.=++.+-++.+....+.|++......+++|.+.+++..|.++++-+. +.+. +...|..++
T Consensus 23 ~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~--~~~~y~~~l 83 (103)
T cd00923 23 GWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA--HKEIYPYIL 83 (103)
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--chhhHHHHH
Confidence 33566677777777788888888888888888888888888888555 3332 233455444
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=80.83 E-value=41 Score=30.85 Aligned_cols=49 Identities=14% Similarity=0.139 Sum_probs=21.5
Q ss_pred HHHhcCChHHHHHHHhhCCC---CChhhHHHHHHHHHhCCChhHHHHHHHHH
Q 007519 275 GYLSVGQVSNAYYLFHNMPD---RDAVAWTAMISGLVQNELFVEATYLFMEM 323 (600)
Q Consensus 275 ~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m 323 (600)
.|..+|.+.+|.++.+.... -+...|..++..+...|+--.+...++.+
T Consensus 288 ~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 288 AYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 34444444444444444433 12334444444444444444444444433
|
|
| >PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B | Back alignment and domain information |
|---|
Probab=80.35 E-value=2.6 Score=31.03 Aligned_cols=49 Identities=24% Similarity=0.116 Sum_probs=23.5
Q ss_pred HHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCC--CCcHHHHhHHHHhhCCc
Q 007519 503 IWGALLGACGFCEGNAEIAEHAAKRLLELDPLN--APAHVVLCNIYAASGRH 552 (600)
Q Consensus 503 ~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~ 552 (600)
....+...+. ..|+++.|+..+-.+++.+|+. ...-..++.++.-.|.-
T Consensus 24 ar~~lA~~~~-~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~ 74 (90)
T PF14561_consen 24 ARYALADALL-AAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPG 74 (90)
T ss_dssp HHHHHHHHHH-HTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT
T ss_pred HHHHHHHHHH-HCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCC
Confidence 3344444444 5566666666666666554432 34444555555555553
|
|
| >PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ] | Back alignment and domain information |
|---|
Probab=80.03 E-value=39 Score=32.73 Aligned_cols=55 Identities=22% Similarity=0.121 Sum_probs=40.8
Q ss_pred HHHhhhhCCHHHHHHHHHHHHhhCCC-CCCcHHHHhHHHH-hhCCcHHHHHHHHHHhh
Q 007519 509 GACGFCEGNAEIAEHAAKRLLELDPL-NAPAHVVLCNIYA-ASGRHVEEHKLRMDMGL 564 (600)
Q Consensus 509 ~~~~~~~g~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~ 564 (600)
..+. +.|-+..|.+..+-++.++|. ||......++.|. +.++++--+++.+....
T Consensus 111 ~~L~-~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 111 QSLG-RRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred HHHH-hcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 3455 778888888888888888887 7777777777765 66777777776665544
|
Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions []. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 57.9 bits (138), Expect = 7e-09
Identities = 22/192 (11%), Positives = 57/192 (29%), Gaps = 7/192 (3%)
Query: 316 ATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLIS 375
A L R P + L A ++D+ + + +
Sbjct: 76 AGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFK 135
Query: 376 MYAKCGVIDNAYNIFSNMVSR-------DLVSWNSMVMGFSHHGLANETLKVFESMLESG 428
+ A+++ + L +N++++G++ G E + V + ++G
Sbjct: 136 CCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAG 195
Query: 429 THPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEA 488
P+ +++ L + E ++ +++ RA +K
Sbjct: 196 LTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAV 255
Query: 489 EEFVLRLPFEPD 500
+ P
Sbjct: 256 HKVKPTFSLPPQ 267
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 53.7 bits (127), Expect = 2e-07
Identities = 21/233 (9%), Positives = 62/233 (26%), Gaps = 29/233 (12%)
Query: 1 MSERNHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQR-------NVVSYNAMLSGFL 53
+ L + + A L + + + YNA++ G+
Sbjct: 117 QHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWA 176
Query: 54 QNGRLSEARRLFEEMPER----NVVSWTAMICGLADAGRVCEA-RKLFEEMPERNV---- 104
+ G E + + + +++S+ A + + + + E+M + +
Sbjct: 177 RQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQA 236
Query: 105 VSWNSMVVGLIRNGELNEARKVFNSM-----PIKNVISWNAMIAGYVECCMMGEAIVLFE 159
+ ++ R L KV + V + + Y + + +
Sbjct: 237 LFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLP 296
Query: 160 EMEERNVVT--------WTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMI 204
+ + + + + R+ + W +
Sbjct: 297 LKTLQCLFEKQLHMELASRVCVVSVEKPTLPSKEVKHARKTLKTLRDQWEKAL 349
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 49.0 bits (115), Expect = 4e-06
Identities = 25/249 (10%), Positives = 55/249 (22%), Gaps = 14/249 (5%)
Query: 196 NVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQ 255
A + L + G + N+++ G+ R G +E
Sbjct: 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELV 185
Query: 256 NLFDTVPVR----DEISWTSMIDGYLSVGQVSNAY-YLFHNMPDRDA----VAWTAMISG 306
+ V D +S+ + + Q + M + ++S
Sbjct: 186 YVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSE 245
Query: 307 LVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESD 366
+ + + P S L A ++H L + +
Sbjct: 246 EDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLKTLQCLFE 305
Query: 367 LILEN-----CLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVF 421
L + K + + W + +V+
Sbjct: 306 KQLHMELASRVCVVSVEKPTLPSKEVKHARKTLKTLRDQWEKALCRALRETKNRLEREVY 365
Query: 422 ESMLESGTH 430
E
Sbjct: 366 EGRFSLYPF 374
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 51.4 bits (123), Expect = 6e-07
Identities = 15/93 (16%), Positives = 31/93 (33%), Gaps = 2/93 (2%)
Query: 464 KIQPG-PEHYVSMINLLGRAGKIKEAEEFVLR-LPFEPDHRIWGALLGACGFCEGNAEIA 521
+ +P ++ + + G E V R L P H A LG + + A
Sbjct: 17 RHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEA 76
Query: 522 EHAAKRLLELDPLNAPAHVVLCNIYAASGRHVE 554
++ + P + + L + +G+
Sbjct: 77 AVLLQQASDAAPEHPGIALWLGHALEDAGQAEA 109
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 50.2 bits (119), Expect = 1e-06
Identities = 22/94 (23%), Positives = 39/94 (41%), Gaps = 4/94 (4%)
Query: 465 IQPGPEHYVSMINL---LGRAGKIKEAEEFVLR-LPFEPDHRIWGALLGACGFCEGNAEI 520
++ PE + NL L + GK++EA + P + +G + +
Sbjct: 36 LEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQG 95
Query: 521 AEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVE 554
A R ++++P A AH L +I+ SG E
Sbjct: 96 ALQCYTRAIQINPAFADAHSNLASIHKDSGNIPE 129
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 45.1 bits (106), Expect = 3e-05
Identities = 23/136 (16%), Positives = 48/136 (35%), Gaps = 11/136 (8%)
Query: 1 MSERNHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSE 60
MS + L ++ + Y D A ++ + L+ RL
Sbjct: 92 MSRSVDVTNTTFLLMAA-SIYFYDQNPDAALRTLHQGDSLECMAMTVQI--LLKLDRLDL 148
Query: 61 ARRLFEEMPERN-----VVSWTAMICGLADAGRVCEARKLFEEMPER---NVVSWNSMVV 112
AR+ ++M +++ TA + A ++ +A +F+EM ++ ++ N
Sbjct: 149 ARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAA 208
Query: 113 GLIRNGELNEARKVFN 128
+ G A V
Sbjct: 209 CHMAQGRWEAAEGVLQ 224
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 45.6 bits (107), Expect = 4e-05
Identities = 61/461 (13%), Positives = 128/461 (27%), Gaps = 155/461 (33%)
Query: 1 MSERNHPKSLVVHL----TSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNG 56
+ + + L+V L + F K L + + ++ FL
Sbjct: 238 LKSKPYENCLLV-LLNVQNAKAWNA----FNLSCKIL--------LTTRFKQVTDFLSAA 284
Query: 57 RLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLF--------EEMPERNVVSWN 108
+ + L E + L +++P V++ N
Sbjct: 285 TTTHIS--LDHHSM-----------TLTPD----EVKSLLLKYLDCRPQDLPRE-VLTTN 326
Query: 109 SMVVGLIRNGEL---NEAR----KVFNSMPIKNVI--SWNAMIAGYVECCMMGEAIVLFE 159
+ +I E A K N + +I S N + + + +F
Sbjct: 327 PRRLSII--AESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMF--DRLSVFP 382
Query: 160 E----MEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKE 215
+ W +I +V VV N HK
Sbjct: 383 PSAHIPTILLSLIWFDVIK-----SDVMV------------VV-----------NKLHKY 414
Query: 216 SLL-------------LFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVP 262
SL+ +++E+K +N + S+++ Y + + + D +P
Sbjct: 415 SLVEKQPKESTISIPSIYLELKVKLENEYALH----RSIVDHY----NIPKTFDSDDLIP 466
Query: 263 VRDEISWTSMIDGYLSVGQVSNAY-YLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFM 321
D Y Y ++ H++ + + + + + F+E
Sbjct: 467 PYL--------DQYF--------YSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQK---- 506
Query: 322 EMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCG 381
+R NA+ S+L + L + + I +N
Sbjct: 507 -IRHDS-TAWNASGSIL----------NT-------LQQLKFYKPYICDNDPKYERLVNA 547
Query: 382 VIDNAYNIFSNMVS---RDLVSWNSMVMGFSHHGLANETLK 419
++D I N++ DL+ + + + E K
Sbjct: 548 ILDFLPKIEENLICSKYTDLL---RIALMAEDEAIFEEAHK 585
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 2e-04
Identities = 21/82 (25%), Positives = 30/82 (36%), Gaps = 7/82 (8%)
Query: 478 LLGRAGKIKEAEEF---VLRLPFEPDHRIWGAL--LGACGFCEGNAEIAEHAAKRLLELD 532
L GR + E+ + L P P + A G C +G +AE KR L
Sbjct: 86 LCGRLNRPAESMAYFDKALADPTYPTP--YIANLNKGICSAKQGQFGLAEAYLKRSLAAQ 143
Query: 533 PLNAPAHVVLCNIYAASGRHVE 554
P PA L +G+ +
Sbjct: 144 PQFPPAFKELARTKMLAGQLGD 165
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 3e-04
Identities = 16/98 (16%), Positives = 30/98 (30%), Gaps = 7/98 (7%)
Query: 462 VYKIQPGPEHYVSMINLLGRAGKIKEAEEF---VLRLPFEPDH-RIWGALLGACGFCEGN 517
V +Q + VS+ K + V+ +P H +
Sbjct: 15 VDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEK--DPFHASCL-PVHIGTLVELNK 71
Query: 518 AEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEE 555
A + + +L++L P N + + Y G E
Sbjct: 72 ANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEH 109
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 42.5 bits (100), Expect = 3e-04
Identities = 12/84 (14%), Positives = 27/84 (32%)
Query: 471 HYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLE 530
Y+ +N +++ AE+++ + F ++LE
Sbjct: 274 LYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILE 333
Query: 531 LDPLNAPAHVVLCNIYAASGRHVE 554
+DP N + + SG +
Sbjct: 334 IDPYNLDVYPLHLASLHESGEKNK 357
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 42.1 bits (100), Expect = 4e-04
Identities = 20/85 (23%), Positives = 39/85 (45%), Gaps = 3/85 (3%)
Query: 472 YVSMINLLGRAGKIKEAEEFVLR-LPFEPDH-RIWGALLGACGFCEGNAEIAEHAAKRLL 529
+ + + +AG + AE ++ EPD+ + LL + F + + H + +
Sbjct: 2 PMELAHREYQAGDFEAAERHCMQLWRQEPDNTGVL-LLLSSIHFQCRRLDRSAHFSTLAI 60
Query: 530 ELDPLNAPAHVVLCNIYAASGRHVE 554
+ +PL A A+ L N+Y G+ E
Sbjct: 61 KQNPLLAEAYSNLGNVYKERGQLQE 85
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 41.3 bits (97), Expect = 4e-04
Identities = 15/105 (14%), Positives = 37/105 (35%), Gaps = 5/105 (4%)
Query: 454 ELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEF---VLRLPFEPDHRIWGALLGA 510
E++ + + + + +A F +L+ P++
Sbjct: 39 EMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK--APNNVDCLEACAE 96
Query: 511 CGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEE 555
C G + A +++L+L+ N A++ L N Y + ++
Sbjct: 97 MQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKK 141
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 600 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.96 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.96 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.95 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.93 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.92 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.92 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.92 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.91 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.91 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.9 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.85 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.85 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.85 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.83 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.83 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.82 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.81 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.8 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.8 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.8 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.78 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.78 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.77 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.77 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.76 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.76 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.75 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.73 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.73 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.71 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.71 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.69 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.67 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.63 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.62 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.6 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.6 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.6 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.59 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.58 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.58 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.56 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.54 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.54 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.54 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.53 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.52 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.51 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.51 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.51 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.5 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.49 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.48 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.48 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.47 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.47 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.46 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.46 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.46 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.45 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.42 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.41 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.39 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.38 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.37 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.36 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.36 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.34 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.32 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.31 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.3 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.29 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.29 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.29 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.28 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.27 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.26 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.25 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.25 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.18 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.15 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.14 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.13 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.08 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.07 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.07 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.05 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.03 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.03 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.02 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.02 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.01 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 98.99 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 98.97 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.97 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.97 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.95 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.94 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.94 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.9 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.89 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.88 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.88 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.87 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.87 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.83 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.81 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.8 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.8 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.79 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.78 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.77 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.77 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.76 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.74 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.74 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.73 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.71 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.69 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.69 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.68 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.67 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.67 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.66 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.65 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.64 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.63 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.62 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.62 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.62 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.61 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.59 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.58 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.57 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.53 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.53 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.51 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.5 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.47 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.46 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.46 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.46 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.45 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.43 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.42 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 98.42 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.42 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.41 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.41 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.41 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.41 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.4 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.39 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.39 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.39 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.36 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.34 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.33 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.33 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.32 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.28 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.28 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.27 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.26 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.26 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.25 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.25 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.25 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.22 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.21 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.21 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.21 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.2 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 98.2 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.19 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.17 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.15 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.15 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.15 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.13 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.13 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.12 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.12 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.11 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.1 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.09 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.07 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.06 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.05 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.04 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.02 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 98.01 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.95 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.91 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.82 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.77 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.7 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.68 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.67 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.62 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 97.61 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.6 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.59 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.58 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.48 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.47 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.39 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.29 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.29 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.25 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.17 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 97.15 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.08 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 97.04 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.98 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.91 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.89 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.86 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.75 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 96.67 | |
| 3ltm_A | 211 | Alpha-REP4; protein engineering, heat-like repeat, | 96.66 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 96.45 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 96.4 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 96.39 | |
| 3ltm_A | 211 | Alpha-REP4; protein engineering, heat-like repeat, | 96.31 | |
| 3ltj_A | 201 | Alpharep-4; protein engineering, heat-like repeat, | 96.24 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 96.24 | |
| 3ltj_A | 201 | Alpharep-4; protein engineering, heat-like repeat, | 96.12 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.93 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 95.88 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 95.52 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 95.12 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.06 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 94.99 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 94.98 | |
| 1oyz_A | 280 | Hypothetical protein YIBA; structural genomics, PS | 94.67 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 94.53 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 94.27 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 94.16 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 93.82 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 93.28 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 93.27 | |
| 1oyz_A | 280 | Hypothetical protein YIBA; structural genomics, PS | 93.12 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 92.76 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 92.42 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 92.35 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 91.65 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 90.48 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 88.58 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 88.52 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 88.51 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 88.34 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 88.12 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 87.72 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 87.56 | |
| 2uwj_G | 115 | Type III export protein PSCG; virulence, chaperone | 87.04 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 87.04 | |
| 2p58_C | 116 | Putative type III secretion protein YSCG; type III | 86.93 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 86.43 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 84.49 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 84.36 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 83.98 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 83.76 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 83.62 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 82.84 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 82.6 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 82.44 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 82.19 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 81.64 | |
| 2uwj_G | 115 | Type III export protein PSCG; virulence, chaperone | 81.0 | |
| 2p58_C | 116 | Putative type III secretion protein YSCG; type III | 80.4 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-40 Score=348.57 Aligned_cols=487 Identities=9% Similarity=-0.006 Sum_probs=295.1
Q ss_pred CCChhHHHHHhhhcCCCChhhHHHHHHHHHhcCChHHHHHHhhcCCC--CCceeHHHHHHHHHHCCChhHHHHHhhcCCC
Q 007519 55 NGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPE--RNVVSWNSMVVGLIRNGELNEARKVFNSMPI 132 (600)
Q Consensus 55 ~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 132 (600)
.|....+...+..+..+++..|+.++..|.+.|++++|+.+|+++.. ||..++..++.+|.+.|++++|+.+|+++..
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 145 (597)
T 2xpi_A 66 DGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDL 145 (597)
T ss_dssp ----------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCG
T ss_pred cCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHhhCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhc
Confidence 34444444444444444555555555555555555555555555543 4444555555555555555555555555532
Q ss_pred --CCcccHHHHHHHHHhcCCHhHHHHHHHhcccCCchhHHHHHHHHHhcCChhHHHHHHccCCCCCcchHHHHHHHHHhc
Q 007519 133 --KNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWN 210 (600)
Q Consensus 133 --~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~ 210 (600)
+++.+++.++.+|.+.|++++|.++|+++...+.. ...+.+.++. +.-...+..+|+.++.+|.+.
T Consensus 146 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~~~~~~~-------~~~~~~~~~~~~~l~~~~~~~ 213 (597)
T 2xpi_A 146 YNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKD-----EKNANKLLMQ-------DGGIKLEASMCYLRGQVYTNL 213 (597)
T ss_dssp GGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC---------------CC-------CSSCCHHHHHHHHHHHHHHHT
T ss_pred cccchhHHHHHHHHHHHHhhHHHHHHHHhccCCcccc-----cccccccccc-------ccccchhHHHHHHHHHHHHHc
Confidence 44444555555555555555555555432211100 0000000000 000012356777777777777
Q ss_pred CChhHHHHHHHHHHhhhcCCCCC-ChhhHHHHHHHHHhcCChhhHH--HH-hcccCCCC----chhHHHHHHHHHhcCCh
Q 007519 211 GFHKESLLLFIEMKGICDNGNNC-NVQSCNSMINGYIRFGRLEEAQ--NL-FDTVPVRD----EISWTSMIDGYLSVGQV 282 (600)
Q Consensus 211 ~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~--~~-~~~~~~~~----~~~~~~l~~~~~~~~~~ 282 (600)
|++++|+++|++|.+. .| +...+..+...+...+..+.+. .+ +..+.+.+ ..+++.++..|.+.|++
T Consensus 214 g~~~~A~~~~~~~~~~-----~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 288 (597)
T 2xpi_A 214 SNFDRAKECYKEALMV-----DAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDEL 288 (597)
T ss_dssp TCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHH
T ss_pred CCHHHHHHHHHHHHHh-----CchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchH
Confidence 7777777777777764 33 3444444544443322222111 11 22222222 22344456667777777
Q ss_pred HHHHHHHhhCCC--CChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhcccchhhhHHHHHHHhh
Q 007519 283 SNAYYLFHNMPD--RDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMK 360 (600)
Q Consensus 283 ~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 360 (600)
++|..+|+++.+ ++..+|+.++..|.+.|++++|+.+|+++.+.+ +.+..++..++.++.+.|+.+.|..+++.+.+
T Consensus 289 ~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 367 (597)
T 2xpi_A 289 RRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVD 367 (597)
T ss_dssp HHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 777777777766 677777777777777777777777777777654 33566777777777777777777777777764
Q ss_pred hcCCCchhHHHHHHHHHHhcCChHHHHHHHhcCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHH
Q 007519 361 TESESDLILENCLISMYAKCGVIDNAYNIFSNMV---SRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFL 437 (600)
Q Consensus 361 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~ 437 (600)
.. +.+..+++.++.+|.+.|++++|.++|+++. +.+..+|+.++.+|.+.|++++|+++|+++.+.+ +.+..++.
T Consensus 368 ~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~ 445 (597)
T 2xpi_A 368 RH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYL 445 (597)
T ss_dssp HC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHH
T ss_pred hC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHH
Confidence 43 3356677777777777788888877777764 4456677777777878888888888887777653 44667777
Q ss_pred HHHHHhcccCchHHHHHHHHHHHhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhC-------CCCCC--HHHHHHH
Q 007519 438 GILSACSHAGLVSRGWELFNAMFDVYKIQP-GPEHYVSMINLLGRAGKIKEAEEFVLRL-------PFEPD--HRIWGAL 507 (600)
Q Consensus 438 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~--~~~~~~l 507 (600)
.++.+|.+.|++++|.++|+++.+. .| ++.+|+.++.+|.+.|++++|.++|+++ +..|+ ..+|..+
T Consensus 446 ~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l 522 (597)
T 2xpi_A 446 FLGMQHMQLGNILLANEYLQSSYAL---FQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANL 522 (597)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHH
Confidence 7777777778888888888777754 33 5667777778888888888887777776 23565 5677777
Q ss_pred HHHHhhhhCCHHHHHHHHHHHHhhCCCCCCcHHHHhHHHHhhCCcHHHHHHHHHHhhc
Q 007519 508 LGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLK 565 (600)
Q Consensus 508 ~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 565 (600)
+..|. ..|++++|+..++++++..|+++.++..++.+|.+.|++++|.++++.+.+.
T Consensus 523 ~~~~~-~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 579 (597)
T 2xpi_A 523 GHAYR-KLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAI 579 (597)
T ss_dssp HHHHH-HTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHH-HhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 77777 7788888888888887777777777778888888888888887766666554
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-39 Score=338.12 Aligned_cols=458 Identities=10% Similarity=0.013 Sum_probs=359.3
Q ss_pred HHhcCChHHHHHHhhcCCCCCceeHHHHHHHHHHCCChhHHHHHhhcCCC--CCcccHHHHHHHHHhcCCHhHHHHHHHh
Q 007519 83 LADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPI--KNVISWNAMIAGYVECCMMGEAIVLFEE 160 (600)
Q Consensus 83 ~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 160 (600)
+...|.+..+...+..+..++...|+.++..+.+.|++++|+.+|+++.. |+..++..++.+|...|++++|..+|+.
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 142 (597)
T 2xpi_A 63 TSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLTK 142 (597)
T ss_dssp -------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ccccCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHhhCCCchHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 44567777777788777778888899999999999999999999999875 7778888899999999999999999998
Q ss_pred cc--cCCchhHHHHHHHHHhcCChhHHHHHHccCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhhhcCCCCCChhhH
Q 007519 161 ME--ERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSC 238 (600)
Q Consensus 161 ~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 238 (600)
+. .++..+++.++.+|.+.|++++|.++|+++...+.. ..++... . ..+.+.+++..++
T Consensus 143 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~~~~-------------~-~~~~~~~~~~~~~ 203 (597)
T 2xpi_A 143 EDLYNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKD-----EKNANKL-------------L-MQDGGIKLEASMC 203 (597)
T ss_dssp TCGGGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC-----------------------------CCCSSCCHHHHHH
T ss_pred HhccccchhHHHHHHHHHHHHhhHHHHHHHHhccCCcccc-----ccccccc-------------c-ccccccchhHHHH
Confidence 84 578888999999999999999999999864432211 0111111 1 1134667788999
Q ss_pred HHHHHHHHhcCChhhHHHHhcccC---CCCchhHHHHHHHHHhcCChHHHHHH---HhhCCC----CChhhHHHHHHHHH
Q 007519 239 NSMINGYIRFGRLEEAQNLFDTVP---VRDEISWTSMIDGYLSVGQVSNAYYL---FHNMPD----RDAVAWTAMISGLV 308 (600)
Q Consensus 239 ~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~---~~~~~~----~~~~~~~~li~~~~ 308 (600)
+.++.+|.+.|++++|..+|+++. +.+...+..+...+...+..+.+... +..+.. .....|+.++..|.
T Consensus 204 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (597)
T 2xpi_A 204 YLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTS 283 (597)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHc
Confidence 999999999999999999999997 33445555565544433332222111 222222 12345666788899
Q ss_pred hCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhcccchhhhHHHHHHHhhhcCCCchhHHHHHHHHHHhcCChHHHHH
Q 007519 309 QNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYN 388 (600)
Q Consensus 309 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 388 (600)
+.|++++|.++|+++.+. +++..++..++.++.+.|++++|..+++.+.+.+.. +..++..++.++.+.|++++|..
T Consensus 284 ~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~ 360 (597)
T 2xpi_A 284 HEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPY-NLDVYPLHLASLHESGEKNKLYL 360 (597)
T ss_dssp THHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CCTTHHHHHHHHHHHTCHHHHHH
T ss_pred CcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHhCCHHHHHH
Confidence 999999999999999875 688999999999999999999999999999887644 77889999999999999999999
Q ss_pred HHhcCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccCchHHHHHHHHHHHhhcCC
Q 007519 389 IFSNMV---SRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKI 465 (600)
Q Consensus 389 ~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 465 (600)
+++++. +.+..+|+.++..|.+.|++++|.++|+++.+.. +.+..+|..++.++.+.|++++|.++|+++.+. .
T Consensus 361 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~ 437 (597)
T 2xpi_A 361 ISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARL--F 437 (597)
T ss_dssp HHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--T
T ss_pred HHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--C
Confidence 999886 5678899999999999999999999999998853 445779999999999999999999999999864 2
Q ss_pred CCCcchHHHHHHHHhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHhhhhCCHHHHHHHHHHHHhh------CCCC-C
Q 007519 466 QPGPEHYVSMINLLGRAGKIKEAEEFVLRLP--FEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLEL------DPLN-A 536 (600)
Q Consensus 466 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~------~p~~-~ 536 (600)
..+..++..++.+|.+.|++++|.++|+++. .+.+..+|..++..+. ..|++++|+..++++++. +|++ .
T Consensus 438 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~ 516 (597)
T 2xpi_A 438 QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAF-NKSDMQTAINHFQNALLLVKKTQSNEKPWA 516 (597)
T ss_dssp TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHSCCCSGGGH
T ss_pred ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH-HhCCHHHHHHHHHHHHHhhhccccchhhHH
Confidence 3378899999999999999999999999985 3456888999999999 999999999999999997 5533 5
Q ss_pred CcHHHHhHHHHhhCCcHHHHHHHHHHhhcC
Q 007519 537 PAHVVLCNIYAASGRHVEEHKLRMDMGLKG 566 (600)
Q Consensus 537 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 566 (600)
.++..++.+|.+.|++++|.++++.+.+.+
T Consensus 517 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 546 (597)
T 2xpi_A 517 ATWANLGHAYRKLKMYDAAIDALNQGLLLS 546 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 689999999999999999999888877654
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=3.3e-27 Score=232.57 Aligned_cols=370 Identities=11% Similarity=0.070 Sum_probs=246.8
Q ss_pred HHHHhcCCHhHHHHHHHhccc--CC-chhHHHHHHHHHhcCChhHHHHHHccCCC---CCcchHHHHHHHHHhcCChhHH
Q 007519 143 AGYVECCMMGEAIVLFEEMEE--RN-VVTWTSMISGYCRAGEVEEGYCLFRRMPR---KNVVSWTAMIGGFAWNGFHKES 216 (600)
Q Consensus 143 ~~~~~~~~~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a 216 (600)
..+.+.|++++|.+.++.+.+ |+ ...+..+...+...|++++|...++...+ .+..+|..+...+.+.|++++|
T Consensus 7 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A 86 (388)
T 1w3b_A 7 HREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEA 86 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHH
Confidence 444555666666665555442 22 23344444455555555555555544432 2334455555555555555555
Q ss_pred HHHHHHHHhhhcCCCCCC-hhhHHHHHHHHHhcCChhhHHHHhcccCCCCchhHHHHHHHHHhcCChHHHHHHHhhCCCC
Q 007519 217 LLLFIEMKGICDNGNNCN-VQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDR 295 (600)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 295 (600)
+..|+++.+. .|+ ..+|..+..++.+.|++++|...|+.+...+ ..
T Consensus 87 ~~~~~~al~~-----~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~----------------------------p~ 133 (388)
T 1w3b_A 87 IEHYRHALRL-----KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN----------------------------PD 133 (388)
T ss_dssp HHHHHHHHHH-----CTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC----------------------------TT
T ss_pred HHHHHHHHHc-----CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----------------------------CC
Confidence 5555555543 232 3345555555555555555555554443100 01
Q ss_pred ChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhcccchhhhHHHHHHHhhhcCCCchhHHHHHHH
Q 007519 296 DAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLIS 375 (600)
Q Consensus 296 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 375 (600)
+...+..+...+...|++++|...|+++.+.. +.+..++..+...+...|+++.|...++.+.+.... +...+..+..
T Consensus 134 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~ 211 (388)
T 1w3b_A 134 LYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGN 211 (388)
T ss_dssp CTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHHHHHH
Confidence 22344445555555566666666666555541 223345555555666666666666666655554322 4556677778
Q ss_pred HHHhcCChHHHHHHHhcCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccCchHHH
Q 007519 376 MYAKCGVIDNAYNIFSNMV---SRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRG 452 (600)
Q Consensus 376 ~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a 452 (600)
.+...|++++|...|++.. +.+..++..+..++...|++++|+..|+++.+.+ +.+..++..+..++...|++++|
T Consensus 212 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 290 (388)
T 1w3b_A 212 VLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEA 290 (388)
T ss_dssp HHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 8888888888888888765 4567888889999999999999999999998853 33467788888999999999999
Q ss_pred HHHHHHHHhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHhhhhCCHHHHHHHHHHHHh
Q 007519 453 WELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLP-FEP-DHRIWGALLGACGFCEGNAEIAEHAAKRLLE 530 (600)
Q Consensus 453 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~ 530 (600)
.+.++++.+. .+.+..++..++..+.+.|++++|.+.++++. ..| +..++..+...+. ..|++++|+..++++++
T Consensus 291 ~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~-~~g~~~~A~~~~~~a~~ 367 (388)
T 1w3b_A 291 EDCYNTALRL--CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQ-QQGKLQEALMHYKEAIR 367 (388)
T ss_dssp HHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHH-TTTCCHHHHHHHHHHHT
T ss_pred HHHHHHHHhh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH-HcCCHHHHHHHHHHHHh
Confidence 9999999875 23367889999999999999999999998875 445 4677888888888 99999999999999999
Q ss_pred hCCCCCCcHHHHhHHHHhhCC
Q 007519 531 LDPLNAPAHVVLCNIYAASGR 551 (600)
Q Consensus 531 ~~p~~~~~~~~l~~~~~~~g~ 551 (600)
+.|+++.++..++.++...|+
T Consensus 368 ~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 368 ISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp TCTTCHHHHHHHHHHHHHTCC
T ss_pred hCCCCHHHHHhHHHHHHHccC
Confidence 999999999999998887764
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=7.8e-26 Score=222.77 Aligned_cols=350 Identities=14% Similarity=0.090 Sum_probs=293.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhhhcCCCCCC-hhhHHHHHHHHHhcCChhhHHHHhcccC---CCCchhHHHHHHHHHh
Q 007519 203 MIGGFAWNGFHKESLLLFIEMKGICDNGNNCN-VQSCNSMINGYIRFGRLEEAQNLFDTVP---VRDEISWTSMIDGYLS 278 (600)
Q Consensus 203 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~ 278 (600)
+...+.+.|++++|++.+..+.+. .|+ ...+..+...+...|++++|...++... +.+..++..+...+.+
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~-----~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~ 79 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQ-----EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKE 79 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHH
Confidence 345566778888888888887764 444 4455566667777888888888777665 5566678888888888
Q ss_pred cCChHHHHHHHhhCCC--C-ChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChh-HHHHHHHHHhcccchhhhHHH
Q 007519 279 VGQVSNAYYLFHNMPD--R-DAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNA-TFSVLFGAAGATANIDLGRQI 354 (600)
Q Consensus 279 ~~~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~~~~~~a~~~ 354 (600)
.|++++|+..|+++.. | +..+|..+..++.+.|++++|+..|+++.+. .|+.. .+..+...+...|++++|...
T Consensus 80 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~ 157 (388)
T 1w3b_A 80 RGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY--NPDLYCVRSDLGNLLKALGRLEEAKAC 157 (388)
T ss_dssp HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--CTTCTHHHHHHHHHHHTTSCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHH
Confidence 8888888888887654 3 4567899999999999999999999999886 46554 556667788889999999999
Q ss_pred HHHHhhhcCCCchhHHHHHHHHHHhcCChHHHHHHHhcCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 007519 355 HCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMV---SRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHP 431 (600)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p 431 (600)
+..+.+... .+..++..+...+...|++++|...|+++. +.+...|..+...+...|++++|+..+++..... +.
T Consensus 158 ~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~ 235 (388)
T 1w3b_A 158 YLKAIETQP-NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PN 235 (388)
T ss_dssp HHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TT
T ss_pred HHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cC
Confidence 999887643 356788899999999999999999999986 5567789999999999999999999999998752 33
Q ss_pred ChhHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhCC--CCCCHHHHHHHH
Q 007519 432 NSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQP-GPEHYVSMINLLGRAGKIKEAEEFVLRLP--FEPDHRIWGALL 508 (600)
Q Consensus 432 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~ 508 (600)
+..++..+..++...|++++|.+.++++.+. .| ++.++..++.+|.+.|++++|.+.++++. .+++..++..+.
T Consensus 236 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 312 (388)
T 1w3b_A 236 HAVVHGNLACVYYEQGLIDLAIDTYRRAIEL---QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLA 312 (388)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHH
Confidence 5678888999999999999999999999864 56 47789999999999999999999999875 445678888888
Q ss_pred HHHhhhhCCHHHHHHHHHHHHhhCCCCCCcHHHHhHHHHhhCCcHHHHHHHHHHhhc
Q 007519 509 GACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLK 565 (600)
Q Consensus 509 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 565 (600)
..+. ..|++++|+..++++++..|+++.++..++.++.+.|++++|.+.++.+.+.
T Consensus 313 ~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 368 (388)
T 1w3b_A 313 NIKR-EQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp HHHH-TTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred HHHH-HcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 8888 9999999999999999999999999999999999999999999988777653
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.95 E-value=1.1e-26 Score=232.08 Aligned_cols=184 Identities=15% Similarity=0.170 Sum_probs=173.6
Q ss_pred hhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhcccc---------hhhhHHHHHHHhhhcCCCchh
Q 007519 298 VAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATAN---------IDLGRQIHCVLMKTESESDLI 368 (600)
Q Consensus 298 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~---------~~~a~~~~~~~~~~~~~~~~~ 368 (600)
..++.+|.+|++.|++++|+++|++|.+.|+.||..||+.||.+|++.+. ++.|.++|+.|.+.|+.||..
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 45788999999999999999999999999999999999999999987554 678999999999999999999
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhcCC----CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhc
Q 007519 369 LENCLISMYAKCGVIDNAYNIFSNMV----SRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACS 444 (600)
Q Consensus 369 ~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~ 444 (600)
+|+++|.+|++.|++++|.++|++|. .||..+|+.+|.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|+
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~ 186 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSM 186 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence 99999999999999999999999986 78999999999999999999999999999999999999999999999999
Q ss_pred ccCchHHHHHHHHHHHhhcCCCCCcchHHHHHHHHhhc
Q 007519 445 HAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRA 482 (600)
Q Consensus 445 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 482 (600)
+.|++++|.+++++|.+. +..|+..+|+.++..|...
T Consensus 187 ~~g~~d~A~~ll~~Mr~~-g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 187 DTKNADKVYKTLQRLRDL-VRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HTTCHHHHHHHHHHHHHH-TSSBCHHHHHHHHHHHHSH
T ss_pred hCCCHHHHHHHHHHHHHh-CCCcCHHHHHHHHHHHhcC
Confidence 999999999999999987 9999999999999988753
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.93 E-value=2e-25 Score=223.08 Aligned_cols=198 Identities=9% Similarity=0.104 Sum_probs=171.8
Q ss_pred hHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhcccchhhhHHHHHHHhhhcCCCchhHHHHHHHHHHhcCC---------h
Q 007519 314 VEATYLFMEMRAHGVPPLN-ATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGV---------I 383 (600)
Q Consensus 314 ~~a~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---------~ 383 (600)
..+..+.+++.+.++.+.+ ..++.+|.+|++.|++++|.++|+.|.+.|+.||..+|++||.+|++.+. +
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l 86 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGL 86 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHH
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchH
Confidence 3455666777777766554 46888999999999999999999999999999999999999999987665 6
Q ss_pred HHHHHHHhcCC----CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccCchHHHHHHHHHH
Q 007519 384 DNAYNIFSNMV----SRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAM 459 (600)
Q Consensus 384 ~~A~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 459 (600)
++|.++|++|. .||..+|+++|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|
T Consensus 87 ~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M 166 (501)
T 4g26_A 87 SRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHM 166 (501)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHH
Confidence 88999999986 78999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhCC---CCCCHHHHHHHHHHHh
Q 007519 460 FDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLP---FEPDHRIWGALLGACG 512 (600)
Q Consensus 460 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~p~~~~~~~l~~~~~ 512 (600)
.+. |+.||..+|++|+.+|++.|++++|.+++++|. ..|+..||+.++..+.
T Consensus 167 ~~~-G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~ 221 (501)
T 4g26_A 167 VES-EVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFK 221 (501)
T ss_dssp HHT-TCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHH
T ss_pred Hhc-CCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHh
Confidence 986 999999999999999999999999999999995 8899999999998876
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=4.9e-23 Score=210.99 Aligned_cols=221 Identities=11% Similarity=-0.067 Sum_probs=97.9
Q ss_pred HHHHHHHHhcccchhhhHHHHHHHhhhcCCCchhHHHHHHHHHHhcCChHHHHHHHhcCC---CCChhhHHHHHHHHHhc
Q 007519 335 FSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMV---SRDLVSWNSMVMGFSHH 411 (600)
Q Consensus 335 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~ 411 (600)
+..+...+...|+++.|...++.+.+.... ...+..+..++...|++++|...++++. +.+...+..+...+...
T Consensus 240 ~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 317 (514)
T 2gw1_A 240 LEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFIL 317 (514)
T ss_dssp HHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHh
Confidence 333334444444444444444444443322 3344444444444444444444444432 22334444444444444
Q ss_pred CChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCC-CcchHHHHHHHHhhcCChHHHHH
Q 007519 412 GLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQP-GPEHYVSMINLLGRAGKIKEAEE 490 (600)
Q Consensus 412 ~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~ 490 (600)
|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+. .| +...+..++..|.+.|++++|.+
T Consensus 318 ~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~la~~~~~~~~~~~A~~ 393 (514)
T 2gw1_A 318 QNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRK---FPEAPEVPNFFAEILTDKNDFDKALK 393 (514)
T ss_dssp TCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH---STTCSHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---cccCHHHHHHHHHHHHHCCCHHHHHH
Confidence 55555555554444431 222334444444444445555555555444432 22 23444444444555555555544
Q ss_pred HHHhCC----CCCC----HHHHHHHHHHHhhh---hCCHHHHHHHHHHHHhhCCCCCCcHHHHhHHHHhhCCcHHHHHHH
Q 007519 491 FVLRLP----FEPD----HRIWGALLGACGFC---EGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLR 559 (600)
Q Consensus 491 ~~~~~~----~~p~----~~~~~~l~~~~~~~---~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 559 (600)
.++++. ..++ ...+..+...+. . .|++++|+..++++++..|+++.++..++.++...|++++|...+
T Consensus 394 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 472 (514)
T 2gw1_A 394 QYDLAIELENKLDGIYVGIAPLVGKATLLT-RNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLF 472 (514)
T ss_dssp HHHHHHHHHHTSSSCSSCSHHHHHHHHHHH-TSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHhhhccchHHHHHHHHHHHHHHHh-hhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 444431 1111 113444444444 4 445555555555555544444444444555555555555555444
Q ss_pred HHH
Q 007519 560 MDM 562 (600)
Q Consensus 560 ~~~ 562 (600)
+..
T Consensus 473 ~~a 475 (514)
T 2gw1_A 473 EES 475 (514)
T ss_dssp HHH
T ss_pred HHH
Confidence 333
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=3e-23 Score=212.57 Aligned_cols=368 Identities=8% Similarity=-0.035 Sum_probs=305.5
Q ss_pred chhHHHHHHHHHhcCChhHHHHHHccCCC--CCcchHHHHHHHHHhcCChhHHHHHHHHHHhhhcCCCCCChhhHHHHHH
Q 007519 166 VVTWTSMISGYCRAGEVEEGYCLFRRMPR--KNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMIN 243 (600)
Q Consensus 166 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~ 243 (600)
...+......+.+.|++++|...|+++.+ |+..+|..+..++...|++++|+..++++.+. .+.+..++..+..
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~l~~ 81 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALEL----KPDYSKVLLRRAS 81 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH----CSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhcc----ChHHHHHHHHHHH
Confidence 45567788899999999999999999874 88889999999999999999999999999976 2345678999999
Q ss_pred HHHhcCChhhHHHHhcccCCCC----------------------------------------------------------
Q 007519 244 GYIRFGRLEEAQNLFDTVPVRD---------------------------------------------------------- 265 (600)
Q Consensus 244 ~~~~~~~~~~a~~~~~~~~~~~---------------------------------------------------------- 265 (600)
++...|++++|...|+.+...+
T Consensus 82 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (514)
T 2gw1_A 82 ANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSV 161 (514)
T ss_dssp HHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCH
T ss_pred HHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchh
Confidence 9999999999999998774111
Q ss_pred ------------------------chhHHHHHHHHHh---cCChHHHHHHHhhCCC----------------C-ChhhHH
Q 007519 266 ------------------------EISWTSMIDGYLS---VGQVSNAYYLFHNMPD----------------R-DAVAWT 301 (600)
Q Consensus 266 ------------------------~~~~~~l~~~~~~---~~~~~~A~~~~~~~~~----------------~-~~~~~~ 301 (600)
...+......+.. .|++++|+..|+++.. + +..++.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (514)
T 2gw1_A 162 TSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLE 241 (514)
T ss_dssp HHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHH
Confidence 2222333333443 8999999999987644 1 245788
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhcccchhhhHHHHHHHhhhcCCCchhHHHHHHHHHHhcC
Q 007519 302 AMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCG 381 (600)
Q Consensus 302 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 381 (600)
.+...+...|++++|+..|+++.+.. |+...+..+..++...|+++.|...++.+.+.... +..++..+...+...|
T Consensus 242 ~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~ 318 (514)
T 2gw1_A 242 HTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSN-NSSVYYHRGQMNFILQ 318 (514)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTT-CTHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcC-CHHHHHHHHHHHHHhC
Confidence 88999999999999999999999874 44778888888999999999999999998876543 5678889999999999
Q ss_pred ChHHHHHHHhcCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccCchHHHHHHHHH
Q 007519 382 VIDNAYNIFSNMV---SRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNA 458 (600)
Q Consensus 382 ~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 458 (600)
++++|...++++. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...+++
T Consensus 319 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 397 (514)
T 2gw1_A 319 NYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDL 397 (514)
T ss_dssp CTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 9999999999875 5567889999999999999999999999998863 44567888888999999999999999999
Q ss_pred HHhhcCCCCC----cchHHHHHHHHhh---cCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHhhhhCCHHHHHHHHHHHH
Q 007519 459 MFDVYKIQPG----PEHYVSMINLLGR---AGKIKEAEEFVLRLP-FEP-DHRIWGALLGACGFCEGNAEIAEHAAKRLL 529 (600)
Q Consensus 459 ~~~~~~~~p~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~ 529 (600)
+.+...-.++ ...+..++..+.. .|++++|.+.++++. ..| +...+..+...+. ..|++++|+..+++++
T Consensus 398 a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~a~ 476 (514)
T 2gw1_A 398 AIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKL-QQEDIDEAITLFEESA 476 (514)
T ss_dssp HHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHH
T ss_pred HHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH-HhcCHHHHHHHHHHHH
Confidence 9875222222 3389999999999 999999999998874 334 5667788888888 9999999999999999
Q ss_pred hhCCCCCCcHHHH
Q 007519 530 ELDPLNAPAHVVL 542 (600)
Q Consensus 530 ~~~p~~~~~~~~l 542 (600)
++.|+++..+..+
T Consensus 477 ~~~~~~~~~~~~~ 489 (514)
T 2gw1_A 477 DLARTMEEKLQAI 489 (514)
T ss_dssp HHCSSHHHHHHHH
T ss_pred HhccccHHHHHHH
Confidence 9999877766655
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.92 E-value=3.1e-23 Score=213.72 Aligned_cols=426 Identities=12% Similarity=0.024 Sum_probs=286.4
Q ss_pred eHHHHHHHHHHCCChhHHHHHhhcCCC---CCcccHHHHHHHHHhcCCHhHHHHHHHhccc---CCchhHHHHHHHHHhc
Q 007519 106 SWNSMVVGLIRNGELNEARKVFNSMPI---KNVISWNAMIAGYVECCMMGEAIVLFEEMEE---RNVVTWTSMISGYCRA 179 (600)
Q Consensus 106 ~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~ 179 (600)
.+..+...+.+.|++++|++.|+++.. .++..+..+..++...|++++|.+.++++.+ .+..++..+..++...
T Consensus 27 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 106 (537)
T 3fp2_A 27 QLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESL 106 (537)
T ss_dssp HHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHc
Confidence 445555566666666666666666543 3445566666666666666666666666652 2345666677777777
Q ss_pred CChhHHHHHHccCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHhcCChhhHHHHhc
Q 007519 180 GEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFD 259 (600)
Q Consensus 180 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 259 (600)
|++++|...|+.+. .++......+..+...+....|...++++... ..+..+........+..+....+.+.+...+.
T Consensus 107 g~~~~A~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (537)
T 3fp2_A 107 GNFTDAMFDLSVLS-LNGDFDGASIEPMLERNLNKQAMKVLNENLSK-DEGRGSQVLPSNTSLASFFGIFDSHLEVSSVN 184 (537)
T ss_dssp TCHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHHHCC--------CCCCCHHHHHHHHHTSCHHHHHHTSC
T ss_pred CCHHHHHHHHHHHh-cCCCCChHHHHHHHHHHHHHHHHHHHHHHHHh-CccccccccchHhHHHHHHHhcChHHHHHHHh
Confidence 77777777775332 12222222334445555566777777777653 11111111122333445556667777777777
Q ss_pred ccCCCCch---hHHHHHHHHHh--------cCChHHHHHHHhhCCC--CC--------hhhHHHHHHHHHhCCChhHHHH
Q 007519 260 TVPVRDEI---SWTSMIDGYLS--------VGQVSNAYYLFHNMPD--RD--------AVAWTAMISGLVQNELFVEATY 318 (600)
Q Consensus 260 ~~~~~~~~---~~~~l~~~~~~--------~~~~~~A~~~~~~~~~--~~--------~~~~~~li~~~~~~g~~~~a~~ 318 (600)
.....++. ....+...+.. .|++++|+.+|+++.+ |+ ..++..+...+...|++++|+.
T Consensus 185 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~ 264 (537)
T 3fp2_A 185 TSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQV 264 (537)
T ss_dssp CCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 66644433 33333333322 2478888888887765 32 2246667778888999999999
Q ss_pred HHHHHHHCCCCCChhHHHHHHHHHhcccchhhhHHHHHHHhhhcCCCchhHHHHHHHHHHhcCChHHHHHHHhcCC---C
Q 007519 319 LFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMV---S 395 (600)
Q Consensus 319 ~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~ 395 (600)
.|++..+. .|+...+..+...+...|+++.|...+..+.+.... +..++..+...+...|++++|...|+++. +
T Consensus 265 ~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~ 341 (537)
T 3fp2_A 265 LLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPE-YPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNP 341 (537)
T ss_dssp HHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Confidence 99999886 566777888888899999999999999988876543 56778888899999999999999998876 4
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCCC----cch
Q 007519 396 RDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPG----PEH 471 (600)
Q Consensus 396 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~ 471 (600)
.+...|..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.++++.+...-.++ ...
T Consensus 342 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 420 (537)
T 3fp2_A 342 ENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGP 420 (537)
T ss_dssp TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHH
Confidence 566788888999999999999999999988763 445567788888889999999999999988765211111 122
Q ss_pred HHHHHHHHhhc----------CChHHHHHHHHhCC-CCC-CHHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCCc
Q 007519 472 YVSMINLLGRA----------GKIKEAEEFVLRLP-FEP-DHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPA 538 (600)
Q Consensus 472 ~~~l~~~~~~~----------g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 538 (600)
+..++.++... |++++|...++++. ..| +...+..+...+. ..|++++|+..+++++++.|+++..
T Consensus 421 ~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~~~~~ 498 (537)
T 3fp2_A 421 LIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKL-QMEKIDEAIELFEDSAILARTMDEK 498 (537)
T ss_dssp HHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHC--CHHH
T ss_pred HHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HhccHHHHHHHHHHHHHhCCCcHHH
Confidence 34455677777 99999999998864 334 5667777777888 8999999999999999999865544
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.91 E-value=1.2e-22 Score=209.40 Aligned_cols=415 Identities=10% Similarity=0.040 Sum_probs=316.0
Q ss_pred cccHHHHHHHHHhcCCHhHHHHHHHhccc---CCchhHHHHHHHHHhcCChhHHHHHHccCCC---CCcchHHHHHHHHH
Q 007519 135 VISWNAMIAGYVECCMMGEAIVLFEEMEE---RNVVTWTSMISGYCRAGEVEEGYCLFRRMPR---KNVVSWTAMIGGFA 208 (600)
Q Consensus 135 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~ 208 (600)
...+..+...+.+.|++++|...|+++.+ .+..++..+..+|.+.|++++|.+.|+++.+ .+..++..+...+.
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 104 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANE 104 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence 45677788889999999999999998874 4567888888999999999999999988764 35667888889999
Q ss_pred hcCChhHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHhcCChhhHHHHhcccCCC------CchhHHHHHHHHHhcCCh
Q 007519 209 WNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVR------DEISWTSMIDGYLSVGQV 282 (600)
Q Consensus 209 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~l~~~~~~~~~~ 282 (600)
..|++++|+..|+ .... .|+.. ...+..+...+....+...++.+... ........+..+....+.
T Consensus 105 ~~g~~~~A~~~~~-~~~~-----~~~~~--~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (537)
T 3fp2_A 105 SLGNFTDAMFDLS-VLSL-----NGDFD--GASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDS 176 (537)
T ss_dssp HHTCHHHHHHHHH-HHC------------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCH
T ss_pred HcCCHHHHHHHHH-HHhc-----CCCCC--hHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcCh
Confidence 9999999999996 3322 33322 12233444555566777777777532 112234455666777788
Q ss_pred HHHHHHHhhCCCCChh---hHHHHHHHHHhC--------CChhHHHHHHHHHHHCCCCCCh--------hHHHHHHHHHh
Q 007519 283 SNAYYLFHNMPDRDAV---AWTAMISGLVQN--------ELFVEATYLFMEMRAHGVPPLN--------ATFSVLFGAAG 343 (600)
Q Consensus 283 ~~A~~~~~~~~~~~~~---~~~~li~~~~~~--------g~~~~a~~~~~~m~~~g~~p~~--------~~~~~l~~~~~ 343 (600)
+.+...+......+.. ....+...+... |++++|+.+|+++.+. .|+. .++..+...+.
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~~~~~g~~~~ 254 (537)
T 3fp2_A 177 HLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSA--NTVDDPLRENAALALCYTGIFHF 254 (537)
T ss_dssp HHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH--CCCcchhhHHHHHHHHHHHHHHH
Confidence 8887777776664433 334444333332 4789999999999875 4442 24556667788
Q ss_pred cccchhhhHHHHHHHhhhcCCCchhHHHHHHHHHHhcCChHHHHHHHhcCC---CCChhhHHHHHHHHHhcCChHHHHHH
Q 007519 344 ATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMV---SRDLVSWNSMVMGFSHHGLANETLKV 420 (600)
Q Consensus 344 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~ 420 (600)
..|+++.|...+..+.+.... ...+..+...+...|++++|...++++. +.+..+|..+...+...|++++|+..
T Consensus 255 ~~~~~~~A~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 332 (537)
T 3fp2_A 255 LKNNLLDAQVLLQESINLHPT--PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKED 332 (537)
T ss_dssp HTTCHHHHHHHHHHHHHHCCC--HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hcccHHHHHHHHHHHHhcCCC--chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHH
Confidence 899999999999998887544 7788889999999999999999999876 55778999999999999999999999
Q ss_pred HHHHHHcCCCCChhHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhCC---
Q 007519 421 FESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQP-GPEHYVSMINLLGRAGKIKEAEEFVLRLP--- 496 (600)
Q Consensus 421 ~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--- 496 (600)
++++.+.. +.+...+..+..++...|++++|.+.++++.+. .| +...+..++..+...|++++|.+.++++.
T Consensus 333 ~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 408 (537)
T 3fp2_A 333 FQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLK---FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLE 408 (537)
T ss_dssp HHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC
Confidence 99999863 345677888889999999999999999999875 45 57789999999999999999999998863
Q ss_pred -CCC----CHHHHHHHHHHHhhhh----------CCHHHHHHHHHHHHhhCCCCCCcHHHHhHHHHhhCCcHHHHHHHHH
Q 007519 497 -FEP----DHRIWGALLGACGFCE----------GNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMD 561 (600)
Q Consensus 497 -~~p----~~~~~~~l~~~~~~~~----------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 561 (600)
..+ ....+......+. .. |++++|+..++++++..|+++.++..++.+|...|++++|.+.++.
T Consensus 409 ~~~~~~~~~~~~~~~~a~~~~-~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 487 (537)
T 3fp2_A 409 EVQEKIHVGIGPLIGKATILA-RQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFED 487 (537)
T ss_dssp HHCSSCSSTTHHHHHHHHHHH-HHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CcchhhHHHHHHHHHHHHHHH-HHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 111 1222334444555 66 9999999999999999999999999999999999999999998877
Q ss_pred HhhcC
Q 007519 562 MGLKG 566 (600)
Q Consensus 562 ~~~~~ 566 (600)
..+..
T Consensus 488 al~~~ 492 (537)
T 3fp2_A 488 SAILA 492 (537)
T ss_dssp HHHHC
T ss_pred HHHhC
Confidence 66543
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.91 E-value=6.6e-22 Score=198.90 Aligned_cols=315 Identities=11% Similarity=0.021 Sum_probs=210.1
Q ss_pred cchHHHHHHHHHhcCChhHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHhcCChhhHHHHhcccC---CCCchhHHHHH
Q 007519 197 VVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVP---VRDEISWTSMI 273 (600)
Q Consensus 197 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~ 273 (600)
...+..+...+.+.|++++|+.+|+++.+. .+.+..++..+..++...|++++|...++.+. +.+..++..++
T Consensus 26 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~----~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 101 (450)
T 2y4t_A 26 VEKHLELGKKLLAAGQLADALSQFHAAVDG----DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRG 101 (450)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----CCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 345666777777777777777777777654 23345666667777777777777777766654 33344455555
Q ss_pred HHHHhcCChHHHHHHHhhCCC--CC-h---hhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhcccc
Q 007519 274 DGYLSVGQVSNAYYLFHNMPD--RD-A---VAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATAN 347 (600)
Q Consensus 274 ~~~~~~~~~~~A~~~~~~~~~--~~-~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~ 347 (600)
.+|.+.|++++|...|+++.. |+ . ..+..++..+... .+..+...+...|+
T Consensus 102 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------------------~~~~~a~~~~~~~~ 158 (450)
T 2y4t_A 102 HLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQ-----------------------RLRSQALNAFGSGD 158 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHTC
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHcCC
Confidence 555555555555555554433 11 1 3333332220000 01111223455566
Q ss_pred hhhhHHHHHHHhhhcCCCchhHHHHHHHHHHhcCChHHHHHHHhcCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHH
Q 007519 348 IDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMV---SRDLVSWNSMVMGFSHHGLANETLKVFESM 424 (600)
Q Consensus 348 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m 424 (600)
++.|...++.+.+... .+..++..+..+|...|++++|...|+++. +.+..+|..++..+...|++++|+..|+++
T Consensus 159 ~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 237 (450)
T 2y4t_A 159 YTAAIAFLDKILEVCV-WDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVREC 237 (450)
T ss_dssp HHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 6666666665555432 245566677777777777777777777765 456777888888888888888888888888
Q ss_pred HHcCCCCCh-hHHHHH------------HHHhcccCchHHHHHHHHHHHhhcCCCCC-----cchHHHHHHHHhhcCChH
Q 007519 425 LESGTHPNS-VTFLGI------------LSACSHAGLVSRGWELFNAMFDVYKIQPG-----PEHYVSMINLLGRAGKIK 486 (600)
Q Consensus 425 ~~~~~~p~~-~~~~~l------------~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~ 486 (600)
... .|+. ..+..+ ...+...|++++|...|+++.+. .|+ ...+..++.++.+.|+++
T Consensus 238 ~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~~~~~l~~~~~~~g~~~ 312 (450)
T 2y4t_A 238 LKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSIAEYTVRSKERICHCFSKDEKPV 312 (450)
T ss_dssp HHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHTTTCHH
T ss_pred HHh--CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHHHHCCCHH
Confidence 764 4443 333333 67788889999999999998864 454 347788889999999999
Q ss_pred HHHHHHHhCC-CCC-CHHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCCcHHHHhHH
Q 007519 487 EAEEFVLRLP-FEP-DHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNI 545 (600)
Q Consensus 487 ~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 545 (600)
+|.+.++++. ..| +...|..+..+|. ..|++++|+..+++++++.|+++.++..++.+
T Consensus 313 ~A~~~~~~a~~~~p~~~~~~~~l~~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 372 (450)
T 2y4t_A 313 EAIRVCSEVLQMEPDNVNALKDRAEAYL-IEEMYDEAIQDYETAQEHNENDQQIREGLEKA 372 (450)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHhCcchHHHHHHHHHH
Confidence 9999998864 344 5778888888888 89999999999999999999888888888843
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.90 E-value=4.6e-21 Score=192.71 Aligned_cols=360 Identities=10% Similarity=0.024 Sum_probs=253.6
Q ss_pred CCchhHHHHHHHHHhcCChhHHHHHHccCCC---CCcchHHHHHHHHHhcCChhHHHHHHHHHHhhhcCCCCCChhhHHH
Q 007519 164 RNVVTWTSMISGYCRAGEVEEGYCLFRRMPR---KNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNS 240 (600)
Q Consensus 164 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 240 (600)
.+...+..++..+.+.|++++|..+|+++.+ .+..+|..+..++...|++++|+..|+++.+. .+.+..++..
T Consensus 24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~ 99 (450)
T 2y4t_A 24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQL----KMDFTAARLQ 99 (450)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc----CCCcHHHHHH
Confidence 3467788899999999999999999998764 46778999999999999999999999999986 2335778899
Q ss_pred HHHHHHhcCChhhHHHHhcccCCCC---c---hhHHHHHHHHHhcCChHHHHHHHhhCCCCChhhHHHHHHHHHhCCChh
Q 007519 241 MINGYIRFGRLEEAQNLFDTVPVRD---E---ISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFV 314 (600)
Q Consensus 241 l~~~~~~~~~~~~a~~~~~~~~~~~---~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 314 (600)
+..+|...|++++|...|+.+...+ . ..+..++..+... .+..+...+...|+++
T Consensus 100 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------------------~~~~~a~~~~~~~~~~ 160 (450)
T 2y4t_A 100 RGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQ-------------------RLRSQALNAFGSGDYT 160 (450)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHTCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHH-------------------HHHHHHHHHHHcCCHH
Confidence 9999999999999999999987433 3 5555555443221 1223344455566666
Q ss_pred HHHHHHHHHHHCCCCCChhHHHHHHHHHhcccchhhhHHHHHHHhhhcCCCchhHHHHHHHHHHhcCChHHHHHHHhcCC
Q 007519 315 EATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMV 394 (600)
Q Consensus 315 ~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 394 (600)
+|+..|+++.+.. +.+...+..+..++...|+++.|...+..+.+... .+..++..+..+|...|++++|...|+++.
T Consensus 161 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 238 (450)
T 2y4t_A 161 AAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKN-DNTEAFYKISTLYYQLGDHELSLSEVRECL 238 (450)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 6666666666542 33445566666666666666666666666655432 245666667777777777777777777664
Q ss_pred ---CCChhhHHHH------------HHHHHhcCChHHHHHHHHHHHHcCCCCC-----hhHHHHHHHHhcccCchHHHHH
Q 007519 395 ---SRDLVSWNSM------------VMGFSHHGLANETLKVFESMLESGTHPN-----SVTFLGILSACSHAGLVSRGWE 454 (600)
Q Consensus 395 ---~~~~~~~~~l------------~~~~~~~~~~~~a~~~~~~m~~~~~~p~-----~~~~~~l~~~~~~~g~~~~a~~ 454 (600)
+.+...+..+ +..+...|++++|+.+|+++.+. .|+ ...+..+..++.+.|++++|..
T Consensus 239 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 316 (450)
T 2y4t_A 239 KLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIR 316 (450)
T ss_dssp HHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 3333444433 77788889999999999988874 454 2366777788888999999999
Q ss_pred HHHHHHhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhCC-CCCCH-HHHHHHHHH------------HhhhhC---
Q 007519 455 LFNAMFDVYKIQP-GPEHYVSMINLLGRAGKIKEAEEFVLRLP-FEPDH-RIWGALLGA------------CGFCEG--- 516 (600)
Q Consensus 455 ~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~-~~~~~l~~~------------~~~~~g--- 516 (600)
.++++.+. .| +...+..++.+|...|++++|.+.++++. ..|+. ..+..+..+ +. ..|
T Consensus 317 ~~~~a~~~---~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~-~lg~~~ 392 (450)
T 2y4t_A 317 VCSEVLQM---EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYK-ILGVKR 392 (450)
T ss_dssp HHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGG-GSCSST
T ss_pred HHHHHHHh---CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHH-HhCCCc
Confidence 99988764 45 57788889999999999999999988863 55653 444444422 22 333
Q ss_pred --CHHHHHHHHHH-HHhhCCCCCC----------cHHHHhHHHHhhCCcHH
Q 007519 517 --NAEIAEHAAKR-LLELDPLNAP----------AHVVLCNIYAASGRHVE 554 (600)
Q Consensus 517 --~~~~a~~~~~~-~~~~~p~~~~----------~~~~l~~~~~~~g~~~~ 554 (600)
+.+++.+.+++ +++..|++.. .+..+..+|...|+.++
T Consensus 393 ~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~ 443 (450)
T 2y4t_A 393 NAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEM 443 (450)
T ss_dssp TCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGG
T ss_pred cCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHH
Confidence 55677888886 7777775432 33445555555555443
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.85 E-value=1.1e-16 Score=169.35 Aligned_cols=370 Identities=12% Similarity=0.103 Sum_probs=230.4
Q ss_pred chhHHHHHHHhcCChhhHHHHhccCCC-CCc-----chHHHH---------------------------HHHHHcCCChh
Q 007519 13 HLTSSITKYSKRGFIDEAKALFQLMPQ-RNV-----VSYNAM---------------------------LSGFLQNGRLS 59 (600)
Q Consensus 13 ~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~-----~~~~~l---------------------------~~~~~~~~~~~ 59 (600)
-....+++|+..|.+.+|+++++++.- |+. ..-+.| ...+...|.++
T Consensus 987 eVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIkaD~~Rv~eyI~kLd~~d~~eIA~Iai~lglyE 1066 (1630)
T 1xi4_A 987 EVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIANIAISNELFE 1066 (1630)
T ss_pred HhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHhChhhHHHHHHHhhhccHHHHHHHHHhCCCHH
Confidence 345678899999999999999999863 331 122222 34455566667
Q ss_pred HHHHHhhhcCCCChhhHHHHHHHHHhcCChHHHHHHhhcCCCCCceeHHHHHHHHHHCCChhHHHHHhhcCCCCCcccHH
Q 007519 60 EARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWN 139 (600)
Q Consensus 60 ~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 139 (600)
+|..+|++... .....+.++. ..+++++|.++.++.. ++.+|..+..++...|++++|++.|.+. .|...|.
T Consensus 1067 EAf~IYkKa~~-~~~A~~VLie---~i~nldrAiE~Aervn--~p~vWsqLAKAql~~G~~kEAIdsYiKA--dD~say~ 1138 (1630)
T 1xi4_A 1067 EAFAIFRKFDV-NTSAVQVLIE---HIGNLDRAYEFAERCN--EPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYM 1138 (1630)
T ss_pred HHHHHHHHcCC-HHHHHHHHHH---HHhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCHHHHHHHHHhc--CChHHHH
Confidence 77777766542 1111122221 5566777777766553 3456777777777777777777777654 5666677
Q ss_pred HHHHHHHhcCCHhHHHHHHHhccc--CCchhHHHHHHHHHhcCChhHHHHHHccCCCCCcchHHHHHHHHHhcCChhHHH
Q 007519 140 AMIAGYVECCMMGEAIVLFEEMEE--RNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESL 217 (600)
Q Consensus 140 ~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 217 (600)
.++.++.+.|++++|.+.|....+ +++...+.++.+|++.++++....+. ..++...|..+...|...|++++|.
T Consensus 1139 eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~fI---~~~n~ad~~~iGd~le~eg~YeeA~ 1215 (1630)
T 1xi4_A 1139 EVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFI---NGPNNAHIQQVGDRCYDEKMYDAAK 1215 (1630)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHHH---hCCCHHHHHHHHHHHHhcCCHHHHH
Confidence 777777777777777777766552 33334445777777777777544332 3345556666777777777777777
Q ss_pred HHHHHHHhhhcCCCCCChhhHHHHHHHHHhcCChhhHHHHhcccCCCCchhHHHHHHHHHhcCChHHHHHHHhhCCCCCh
Q 007519 218 LLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDA 297 (600)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 297 (600)
.+|... ..|..+..++.+.|++++|.+.+++. .++.+|..+..+|...|++..|...... ...+.
T Consensus 1216 ~~Y~kA------------~ny~rLA~tLvkLge~q~AIEaarKA--~n~~aWkev~~acve~~Ef~LA~~cgl~-Iiv~~ 1280 (1630)
T 1xi4_A 1216 LLYNNV------------SNFGRLASTLVHLGEYQAAVDGARKA--NSTRTWKEVCFACVDGKEFRLAQMCGLH-IVVHA 1280 (1630)
T ss_pred HHHHhh------------hHHHHHHHHHHHhCCHHHHHHHHHHh--CCHHHHHHHHHHHhhhhHHHHHHHHHHh-hhcCH
Confidence 777664 25777777777777777777777766 3456777777777777777777766654 22345
Q ss_pred hhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhc--ccchhhhHHHHHHHhhhcCC------Cchh
Q 007519 298 VAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLN-ATFSVLFGAAGA--TANIDLGRQIHCVLMKTESE------SDLI 368 (600)
Q Consensus 298 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~------~~~~ 368 (600)
..+..++..|.+.|.+++|+.+++..... .|.. ..|+-+...+++ .++..++.+.|... .+++ -+..
T Consensus 1281 deLeeli~yYe~~G~feEAI~LlE~aL~L--eraH~gmftELaiLyaKy~peklmEhlk~f~~r--ini~k~~r~~e~~~ 1356 (1630)
T 1xi4_A 1281 DELEELINYYQDRGYFEELITMLEAALGL--ERAHMGMFTELAILYSKFKPQKMREHLELFWSR--VNIPKVLRAAEQAH 1356 (1630)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhcc--ChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHh--cccchHhHHHHHHH
Confidence 55667788888888888888888766643 3322 234444444433 33344444433321 1111 1456
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhcC-------------C--CCChhhHHHHHHHHHhcC
Q 007519 369 LENCLISMYAKCGVIDNAYNIFSNM-------------V--SRDLVSWNSMVMGFSHHG 412 (600)
Q Consensus 369 ~~~~l~~~~~~~~~~~~A~~~~~~~-------------~--~~~~~~~~~l~~~~~~~~ 412 (600)
.|..++..|.+.|+++.|..+.-+- . ..|+..|...+..|...+
T Consensus 1357 lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~kv~n~elyykai~Fyl~~~ 1415 (1630)
T 1xi4_A 1357 LWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEFK 1415 (1630)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhcccccHHHHHHHHHHHHhhC
Confidence 6777888888888888887332221 1 335566666666665444
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.85 E-value=5.2e-19 Score=171.77 Aligned_cols=319 Identities=12% Similarity=0.014 Sum_probs=198.2
Q ss_pred cchHHHHHHHHHhcCChhHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHhcCChhhHHHHhcccC---CCCchhHHHHH
Q 007519 197 VVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVP---VRDEISWTSMI 273 (600)
Q Consensus 197 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~ 273 (600)
+..+..+...+...|++++|+..|+++.+. .+.+..++..+..++...|++++|...++.+. +.+...+..+.
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~----~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 78 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDG----DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRG 78 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHH
Confidence 456777788888888888888888888875 23346677777778888888888888877765 33445555666
Q ss_pred HHHHhcCChHHHHHHHhhCCC--C----ChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhcccc
Q 007519 274 DGYLSVGQVSNAYYLFHNMPD--R----DAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATAN 347 (600)
Q Consensus 274 ~~~~~~~~~~~A~~~~~~~~~--~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~ 347 (600)
..+...|++++|...|+++.. | +...+..+...+. ...+..+...+...|+
T Consensus 79 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~ 135 (359)
T 3ieg_A 79 HLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGAD 135 (359)
T ss_dssp HHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTC
T ss_pred HHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccC
Confidence 666666666666666655433 2 1112222210000 0001111234444455
Q ss_pred hhhhHHHHHHHhhhcCCCchhHHHHHHHHHHhcCChHHHHHHHhcCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHH
Q 007519 348 IDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMV---SRDLVSWNSMVMGFSHHGLANETLKVFESM 424 (600)
Q Consensus 348 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m 424 (600)
++.|...+..+.+... .+...+..+...+...|++++|...++++. +.+...+..+...+...|++++|...+++.
T Consensus 136 ~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 214 (359)
T 3ieg_A 136 YTAAITFLDKILEVCV-WDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVREC 214 (359)
T ss_dssp HHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCC-CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5555555554444322 234455566666666677777776666654 345566777777777777777777777777
Q ss_pred HHcCCCCCh-hHHH------------HHHHHhcccCchHHHHHHHHHHHhhcCCCCC-c----chHHHHHHHHhhcCChH
Q 007519 425 LESGTHPNS-VTFL------------GILSACSHAGLVSRGWELFNAMFDVYKIQPG-P----EHYVSMINLLGRAGKIK 486 (600)
Q Consensus 425 ~~~~~~p~~-~~~~------------~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~----~~~~~l~~~~~~~g~~~ 486 (600)
.+. .|+. ..+. .+...+...|++++|...++++.+. .|+ . ..+..++.++...|+++
T Consensus 215 ~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~la~~~~~~~~~~ 289 (359)
T 3ieg_A 215 LKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSVAEYTVRSKERICHCFSKDEKPV 289 (359)
T ss_dssp HHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHHTTCHH
T ss_pred Hhh--CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCchHHHHHHHHHHHHHHHHccCHH
Confidence 664 2332 2222 2244567778888888888887764 343 2 23455777788888888
Q ss_pred HHHHHHHhCC-CCC-CHHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCCcHHHHhHHHHhh
Q 007519 487 EAEEFVLRLP-FEP-DHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAAS 549 (600)
Q Consensus 487 ~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 549 (600)
+|.+.+++.. ..| +...+..+...+. ..|++++|+..++++++++|+++.+...+..+....
T Consensus 290 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~ 353 (359)
T 3ieg_A 290 EAIRICSEVLQMEPDNVNALKDRAEAYL-IEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLL 353 (359)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Confidence 8888887764 334 5566777777777 788888888888888888887777777776665443
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.85 E-value=7.8e-17 Score=170.57 Aligned_cols=466 Identities=12% Similarity=0.077 Sum_probs=334.9
Q ss_pred CCcchHHHHHHHHHcCCC-hhHHHHHhhhcCCCChhhHHHHHHHHHhcCChHHHHHHhhcCCC--------CCceeHHHH
Q 007519 40 RNVVSYNAMLSGFLQNGR-LSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPE--------RNVVSWNSM 110 (600)
Q Consensus 40 ~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~l 110 (600)
.++.++|+|+..|...++ ++.-+. .|..-=+.++.-||...|+.-|.-.|++-.- ..-..|-.+
T Consensus 871 ~~~~~hnalakiyid~n~npe~fL~-------~n~~yd~~~vgkyce~rDp~la~iay~~g~~d~eli~vt~~n~l~k~~ 943 (1630)
T 1xi4_A 871 EEPATHNALAKIYIDSNNNPERFLR-------ENPYYDSRVVGKYCEKRDPHLACVAYERGQCDLELINVCNENSLFKSL 943 (1630)
T ss_pred CCHHHHHHHHHHHhccCCCHHHHhh-------ccCcccHHHHHHHHHhcCcchHHHHhcccCCcHHHHHHHhcchhHHHH
Confidence 466677777777765443 332211 2222223444445555555555555554221 111233444
Q ss_pred HHHHHHCCChhHHHHHhhcCC-----------------CCCcccHHHHHHHHHhcCCHhHHHHHHHhcc-cCC-----ch
Q 007519 111 VVGLIRNGELNEARKVFNSMP-----------------IKNVISWNAMIAGYVECCMMGEAIVLFEEME-ERN-----VV 167 (600)
Q Consensus 111 ~~~~~~~~~~~~a~~~~~~~~-----------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~-----~~ 167 (600)
++.+.+..+.+---.++.+-. ..++.--...+++|...|.+.+|.++++++. +|+ ..
T Consensus 944 arylv~r~d~~lW~~vl~~~n~~RR~Lidqv~a~aL~e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~ 1023 (1630)
T 1xi4_A 944 SRYLVRRKDPELWGSVLLESNPYRRPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRN 1023 (1630)
T ss_pred HHHHHHhcCHHHHHHHhcCCcHHHHHHHHHHHHhhcccccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHH
Confidence 444444444443333331110 1455566778889999999999999999987 332 24
Q ss_pred hHHHHHHHHHhcCChhHHHHHHccCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHh
Q 007519 168 TWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIR 247 (600)
Q Consensus 168 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 247 (600)
..+.++....+. +..+..++.++...-+ ...+...+...|.+++|..+|++... .....+.+ +..
T Consensus 1024 LqnlLi~tAIka-D~~Rv~eyI~kLd~~d---~~eIA~Iai~lglyEEAf~IYkKa~~--------~~~A~~VL---ie~ 1088 (1630)
T 1xi4_A 1024 LQNLLILTAIKA-DRTRVMEYINRLDNYD---APDIANIAISNELFEEAFAIFRKFDV--------NTSAVQVL---IEH 1088 (1630)
T ss_pred HHHHHHHHHHHh-ChhhHHHHHHHhhhcc---HHHHHHHHHhCCCHHHHHHHHHHcCC--------HHHHHHHH---HHH
Confidence 555666666665 5677777776665333 45578889999999999999999631 12222233 237
Q ss_pred cCChhhHHHHhcccCCCCchhHHHHHHHHHhcCChHHHHHHHhhCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCC
Q 007519 248 FGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHG 327 (600)
Q Consensus 248 ~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 327 (600)
.+++++|.++.+++ .++.+|..+..++...|++++|+..|.+. .|...|..++.++.+.|++++|++.|...++..
T Consensus 1089 i~nldrAiE~Aerv--n~p~vWsqLAKAql~~G~~kEAIdsYiKA--dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~ 1164 (1630)
T 1xi4_A 1089 IGNLDRAYEFAERC--NEPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA 1164 (1630)
T ss_pred HhhHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCHHHHHHHHHhc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc
Confidence 78999999999877 45778999999999999999999999775 677788899999999999999999999887754
Q ss_pred CCCChhHHHHHHHHHhcccchhhhHHHHHHHhhhcCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHH
Q 007519 328 VPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMG 407 (600)
Q Consensus 328 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~ 407 (600)
++....+.+..+|++.++++....+.. .++...+..+.+.|...|++++|..+|... ..|..+...
T Consensus 1165 --~e~~Idt~LafaYAKl~rleele~fI~-------~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA-----~ny~rLA~t 1230 (1630)
T 1xi4_A 1165 --RESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLAST 1230 (1630)
T ss_pred --ccccccHHHHHHHHhhcCHHHHHHHHh-------CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh-----hHHHHHHHH
Confidence 444444468889999988886554431 334556667999999999999999999985 589999999
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCCCcchHHHHHHHHhhcCChHH
Q 007519 408 FSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKE 487 (600)
Q Consensus 408 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 487 (600)
+.+.|++++|++.+++. .+..+|..+-.+|...|++..|..+... +..++..+..++..|.+.|.+++
T Consensus 1231 LvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~------Iiv~~deLeeli~yYe~~G~feE 1298 (1630)
T 1xi4_A 1231 LVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH------IVVHADELEELINYYQDRGYFEE 1298 (1630)
T ss_pred HHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHh------hhcCHHHHHHHHHHHHHcCCHHH
Confidence 99999999999999976 3558888889999999999999887653 23456678899999999999999
Q ss_pred HHHHHHhCC-CCCCH-HHHHHHHHHHh-hhhCCHHHHHHHHHHHHhhCC-----CCCCcHHHHhHHHHhhCCcHHHHH
Q 007519 488 AEEFVLRLP-FEPDH-RIWGALLGACG-FCEGNAEIAEHAAKRLLELDP-----LNAPAHVVLCNIYAASGRHVEEHK 557 (600)
Q Consensus 488 A~~~~~~~~-~~p~~-~~~~~l~~~~~-~~~g~~~~a~~~~~~~~~~~p-----~~~~~~~~l~~~~~~~g~~~~A~~ 557 (600)
|+.+++... ..|.. ..|..+...+. ++.++..++++.|..-..+.| .++..|..+...|.+.|+++.|..
T Consensus 1299 AI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1299 LITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred HHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 999997753 44433 34544444433 255778888888887777666 678889999999999999999985
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.83 E-value=4.2e-18 Score=165.36 Aligned_cols=301 Identities=13% Similarity=0.047 Sum_probs=224.6
Q ss_pred hhhHHHHHHHHHhcCChhhHHHHhcccC---CCCchhHHHHHHHHHhcCChHHHHHHHhhCCC---CChhhHHHHHHHHH
Q 007519 235 VQSCNSMINGYIRFGRLEEAQNLFDTVP---VRDEISWTSMIDGYLSVGQVSNAYYLFHNMPD---RDAVAWTAMISGLV 308 (600)
Q Consensus 235 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~ 308 (600)
...+..+...+...|++++|...|+.+. +.++.++..+...+...|++++|+..|+++.. .+...+..+...+.
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 82 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLL 82 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHH
Confidence 4556667777777777777777777665 44556666777777777777777777766543 24456666777777
Q ss_pred hCCChhHHHHHHHHHHHCCCCC---Chh-HHHHHHHHHhcccchhhhHHHHHHHhhhcCCCchhHHHHHHHHHHhcCChH
Q 007519 309 QNELFVEATYLFMEMRAHGVPP---LNA-TFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVID 384 (600)
Q Consensus 309 ~~g~~~~a~~~~~~m~~~g~~p---~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 384 (600)
..|++++|+..|++..+. .| +.. .+..+.... . ...+..+...+...|+++
T Consensus 83 ~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~-------~----------------~~~~~~~a~~~~~~~~~~ 137 (359)
T 3ieg_A 83 KQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKAD-------E----------------MQRLRSQALDAFDGADYT 137 (359)
T ss_dssp HHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHH-------H----------------HHHHHHHHHHHHHTTCHH
T ss_pred HcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHH-------H----------------HHHHHHHHHHHHHccCHH
Confidence 777777777777776654 34 221 111111110 0 111233467888999999
Q ss_pred HHHHHHhcCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccCchHHHHHHHHHHHh
Q 007519 385 NAYNIFSNMV---SRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFD 461 (600)
Q Consensus 385 ~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 461 (600)
+|...++++. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+
T Consensus 138 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 216 (359)
T 3ieg_A 138 AAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLK 216 (359)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 9999999876 5677889999999999999999999999999753 55667888888999999999999999999987
Q ss_pred hcCCCCC-cchHH------------HHHHHHhhcCChHHHHHHHHhCC-CCCCHH-----HHHHHHHHHhhhhCCHHHHH
Q 007519 462 VYKIQPG-PEHYV------------SMINLLGRAGKIKEAEEFVLRLP-FEPDHR-----IWGALLGACGFCEGNAEIAE 522 (600)
Q Consensus 462 ~~~~~p~-~~~~~------------~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~-----~~~~l~~~~~~~~g~~~~a~ 522 (600)
. .|+ ...+. .++..+.+.|++++|.+.++++. ..|+.. .+..+...+. ..|++++|+
T Consensus 217 ~---~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~-~~~~~~~A~ 292 (359)
T 3ieg_A 217 L---DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFS-KDEKPVEAI 292 (359)
T ss_dssp H---CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHH-HTTCHHHHH
T ss_pred h---CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHH-HccCHHHHH
Confidence 5 453 33332 33777999999999999998864 344422 2344556677 999999999
Q ss_pred HHHHHHHhhCCCCCCcHHHHhHHHHhhCCcHHHHHHHHHHhhc
Q 007519 523 HAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLK 565 (600)
Q Consensus 523 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 565 (600)
..++++++..|+++.++..++.++...|++++|.+.++...+.
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 293 RICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH 335 (359)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999988776654
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.83 E-value=2.4e-18 Score=163.49 Aligned_cols=341 Identities=16% Similarity=0.152 Sum_probs=164.8
Q ss_pred HhcCChhhHHHHhccCCCCCcchHHHHHHHHHcCCChhHHHHHhhhcCCCChhhHHHHHHHHHhcCChHHHHHHhhcCCC
Q 007519 22 SKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPE 101 (600)
Q Consensus 22 ~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 101 (600)
.+.|+.++|.+.++++..| .+|..|+.++.+.|++++|++.|.+. +|..+|..++.++...|++++|+..++...+
T Consensus 14 ~~~~~ld~A~~fae~~~~~--~vWs~La~A~l~~g~~~eAIdsfika--~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark 89 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARK 89 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCCCh--HHHHHHHHHHHHcCCHHHHHHHHHcC--CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 4668899999999999555 58999999999999999999999775 6777999999999999999999998887765
Q ss_pred --CCceeHHHHHHHHHHCCChhHHHHHhhcCCCCCcccHHHHHHHHHhcCCHhHHHHHHHhcccCCchhHHHHHHHHHhc
Q 007519 102 --RNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRA 179 (600)
Q Consensus 102 --~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~ 179 (600)
+++.+.+.++.+|.+.|+++++.++++. |+..+|..++..|...|.+++|...|..+ ..|..++.++.+.
T Consensus 90 ~~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-----~n~~~LA~~L~~L 161 (449)
T 1b89_A 90 KARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHL 161 (449)
T ss_dssp -------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT-----TCHHHHHHHHHTT
T ss_pred hCccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----hhHHHHHHHHHHh
Confidence 5678899999999999999999888764 77789999999999999999999999977 5899999999999
Q ss_pred CChhHHHHHHccCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHhcCChhhHHHHhc
Q 007519 180 GEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFD 259 (600)
Q Consensus 180 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 259 (600)
|++++|.+.++++ .++.+|..++.+|...|+++.|......+. +.| .-...++..|.+.|.+++|..+++
T Consensus 162 g~yq~AVea~~KA--~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~------~~a--d~l~~lv~~Yek~G~~eEai~lLe 231 (449)
T 1b89_A 162 GEYQAAVDGARKA--NSTRTWKEVCFACVDGKEFRLAQMCGLHIV------VHA--DELEELINYYQDRGYFEELITMLE 231 (449)
T ss_dssp TCHHHHHHHHHHH--TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT------TCH--HHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHc--CCchhHHHHHHHHHHcCcHHHHHHHHHHHH------hCH--hhHHHHHHHHHHCCCHHHHHHHHH
Confidence 9999999999998 388999999999999999999966554322 233 335578899999999999999999
Q ss_pred ccCCC---CchhHHHHHHHHHh--cCChHHHHHHHhhCCC--------CChhhHHHHHHHHHhCCChhHHHHHHHHHHHC
Q 007519 260 TVPVR---DEISWTSMIDGYLS--VGQVSNAYYLFHNMPD--------RDAVAWTAMISGLVQNELFVEATYLFMEMRAH 326 (600)
Q Consensus 260 ~~~~~---~~~~~~~l~~~~~~--~~~~~~A~~~~~~~~~--------~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 326 (600)
..... ....|+.+.-.|++ .++..+.++.|..-.. .+...|..+...|.+.++++.|... |.++
T Consensus 232 ~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~t---m~~h 308 (449)
T 1b89_A 232 AALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT---MMNH 308 (449)
T ss_dssp HHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHH---HHHS
T ss_pred HHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHH---HHhC
Confidence 88733 44567777777766 4566777777765444 2567899999999999999998874 4443
Q ss_pred CCCCChhHHHHHHHHHhcccchhhhHHHHHHHhhhcCCCchhHHHHHHHHHHhcCChHHHHHHHhcC
Q 007519 327 GVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNM 393 (600)
Q Consensus 327 g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 393 (600)
+|+...-..+.....+..+.+.-.+........ .+...+-|+.++...=+...+..+|++.
T Consensus 309 --~~~a~~~~~f~~~~~kv~n~elyYkai~fyl~~----~p~~l~~ll~~l~~~ld~~r~v~~~~~~ 369 (449)
T 1b89_A 309 --PTDAWKEGQFKDIITKVANVELYYRAIQFYLEF----KPLLLNDLLMVLSPRLDHTRAVNYFSKV 369 (449)
T ss_dssp --TTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHH----CGGGHHHHHHHHGGGCCHHHHHHHHHHT
T ss_pred --ChhhhhhHHHHHHHhchhHHHHHHHHHHHHHhc----CHHHHHHHHHHHHhccCcHHHHHHHHHc
Confidence 344333333344444555544433333322211 2233455555555555555555555443
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.82 E-value=3.9e-18 Score=163.54 Aligned_cols=251 Identities=12% Similarity=-0.002 Sum_probs=166.5
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhccc-chhhhHHHHHHHhhhcCCCchhHHHHHHHHH
Q 007519 299 AWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATA-NIDLGRQIHCVLMKTESESDLILENCLISMY 377 (600)
Q Consensus 299 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 377 (600)
.+..++..+...|++++|+..++++.+.. +.+...+..+...+...| +++.|...++.+.+.... +...+..+...+
T Consensus 58 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~ 135 (330)
T 3hym_B 58 CLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKT-YGPAWIAYGHSF 135 (330)
T ss_dssp THHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTT-CTHHHHHHHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCc-cHHHHHHHHHHH
Confidence 33344444455555555555555554431 223334444444555555 555555555554443322 344566666777
Q ss_pred HhcCChHHHHHHHhcCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccCchHHHHH
Q 007519 378 AKCGVIDNAYNIFSNMV---SRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWE 454 (600)
Q Consensus 378 ~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~ 454 (600)
...|++++|...++++. +.+...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|..
T Consensus 136 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~ 214 (330)
T 3hym_B 136 AVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEK 214 (330)
T ss_dssp HHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHH
Confidence 77777777777777665 3345666667777888888888888888887642 3445667777778888888888888
Q ss_pred HHHHHHhhcCC-------CCCcchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHhhhhCCHHHHHHHH
Q 007519 455 LFNAMFDVYKI-------QPGPEHYVSMINLLGRAGKIKEAEEFVLRLP-FEP-DHRIWGALLGACGFCEGNAEIAEHAA 525 (600)
Q Consensus 455 ~~~~~~~~~~~-------~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~g~~~~a~~~~ 525 (600)
.++++.+...- .....++..++.+|...|++++|.+.+++.. ..| +...+..+...+. ..|++++|+..+
T Consensus 215 ~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~ 293 (330)
T 3hym_B 215 WFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHS-LMGNFENAVDYF 293 (330)
T ss_dssp HHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHH-HHTCHHHHHHHH
T ss_pred HHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHH-HhccHHHHHHHH
Confidence 88887764211 2235678888888888999999988888764 333 4566777777777 889999999999
Q ss_pred HHHHhhCCCCCCcHHHHhHHH-HhhCCcH
Q 007519 526 KRLLELDPLNAPAHVVLCNIY-AASGRHV 553 (600)
Q Consensus 526 ~~~~~~~p~~~~~~~~l~~~~-~~~g~~~ 553 (600)
++++++.|+++..+..++.++ ...|+.+
T Consensus 294 ~~al~~~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 294 HTALGLRRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HTTTTTCSCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHccCCCchHHHHHHHHHHHHHhCchh
Confidence 999999998888888888887 4556643
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.81 E-value=3.9e-18 Score=162.06 Aligned_cols=355 Identities=11% Similarity=0.109 Sum_probs=178.5
Q ss_pred CccchhHHHHHHHhcCChhhHHHHhccCCCCCcchHHHHHHHHHcCCChhHHHHHhhhcCC--CChhhHHHHHHHHHhcC
Q 007519 10 LVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPE--RNVVSWTAMICGLADAG 87 (600)
Q Consensus 10 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~g 87 (600)
++.+|..++.++.+.|++++|++.|.+. +|..+|..++..+...|++++|...++...+ +++.+.+.|+.+|.+.|
T Consensus 31 ~~~vWs~La~A~l~~g~~~eAIdsfika--~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~~~~i~~~Li~~Y~Klg 108 (449)
T 1b89_A 31 EPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTN 108 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHcC--CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHhC
Confidence 3458999999999999999999999775 6777999999999999999999998887775 56788999999999999
Q ss_pred ChHHHHHHhhcCCCCCceeHHHHHHHHHHCCChhHHHHHhhcCCCCCcccHHHHHHHHHhcCCHhHHHHHHHhcccCCch
Q 007519 88 RVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVV 167 (600)
Q Consensus 88 ~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 167 (600)
+++++.++++. |+..+|+.++..|...|.+++|...|..+ ..|..++.++.+.|++++|.+.+.++ .++.
T Consensus 109 ~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-----~n~~~LA~~L~~Lg~yq~AVea~~KA--~~~~ 178 (449)
T 1b89_A 109 RLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA--NSTR 178 (449)
T ss_dssp CHHHHTTTTTC---C----------------CTTTHHHHHHHT-----TCHHHHHHHHHTTTCHHHHHHHHHHH--TCHH
T ss_pred CHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----hhHHHHHHHHHHhccHHHHHHHHHHc--CCch
Confidence 99999888864 78889999999999999999999999988 69999999999999999999999998 4889
Q ss_pred hHHHHHHHHHhcCChhHHHHHHccCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHh
Q 007519 168 TWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIR 247 (600)
Q Consensus 168 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 247 (600)
+|..++.+|...|+++.|......+. ..+.-...++..|.+.|.+++|..+++..... -+-....|+-+.-+|++
T Consensus 179 ~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~l----e~ah~~~ftel~il~~k 253 (449)
T 1b89_A 179 TWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYFEELITMLEAALGL----ERAHMGMFTELAILYSK 253 (449)
T ss_dssp HHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS----TTCCHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCC----cHHHHHHHHHHHHHHHh
Confidence 99999999999999999988887765 34444557899999999999999999999854 12335566666666665
Q ss_pred --cCChhhHHHHhcccC---C-----CCchhHHHHHHHHHhcCChHHHHHHHhhCCC---------------CChhhHHH
Q 007519 248 --FGRLEEAQNLFDTVP---V-----RDEISWTSMIDGYLSVGQVSNAYYLFHNMPD---------------RDAVAWTA 302 (600)
Q Consensus 248 --~~~~~~a~~~~~~~~---~-----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---------------~~~~~~~~ 302 (600)
.++..+.+++|..-. + .+...|..++..|...++++.|....-+-.. .+...|-.
T Consensus 254 y~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h~~~a~~~~~f~~~~~kv~n~elyYk 333 (449)
T 1b89_A 254 FKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYR 333 (449)
T ss_dssp TCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHSTTTTCCHHHHHHHHHHCSSTHHHHH
T ss_pred cCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHhCChhhhhhHHHHHHHhchhHHHHHHH
Confidence 455666666665443 2 3677899999999999999999876655432 23444555
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhcccchhhhHHHHHHHhhhcCCCchhHHHHHHHHHHhcCC
Q 007519 303 MISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGV 382 (600)
Q Consensus 303 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 382 (600)
.+..|. +.....+.-+-......+. .+.++..+.+.|++..+..++..+...+ +..+-.++-+.|....+
T Consensus 334 ai~fyl--~~~p~~l~~ll~~l~~~ld-----~~r~v~~~~~~~~l~l~~~yl~~v~~~n---~~~vnealn~l~ieeed 403 (449)
T 1b89_A 334 AIQFYL--EFKPLLLNDLLMVLSPRLD-----HTRAVNYFSKVKQLPLVKPYLRSVQNHN---NKSVNESLNNLFITEED 403 (449)
T ss_dssp HHHHHH--HHCGGGHHHHHHHHGGGCC-----HHHHHHHHHHTTCTTTTHHHHHHHHTTC---CHHHHHHHHHHHHHTTC
T ss_pred HHHHHH--hcCHHHHHHHHHHHHhccC-----cHHHHHHHHHcCCcHHHHHHHHHHHHhh---HHHHHHHHHHHHHhhhh
Confidence 555444 1122222222222111111 1233344445555555555554444332 33444455555555555
Q ss_pred hHHHHHHHh
Q 007519 383 IDNAYNIFS 391 (600)
Q Consensus 383 ~~~A~~~~~ 391 (600)
++.-+.-.+
T Consensus 404 ~~~lr~si~ 412 (449)
T 1b89_A 404 YQALRTSID 412 (449)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 554444333
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.80 E-value=9.7e-17 Score=162.60 Aligned_cols=365 Identities=9% Similarity=-0.041 Sum_probs=257.0
Q ss_pred CCchhHHHHHHHHHh----cCChhHHHHHHccCCC-CCcchHHHHHHHHHh----cCChhHHHHHHHHHHhhhcCCCCCC
Q 007519 164 RNVVTWTSMISGYCR----AGEVEEGYCLFRRMPR-KNVVSWTAMIGGFAW----NGFHKESLLLFIEMKGICDNGNNCN 234 (600)
Q Consensus 164 ~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~ 234 (600)
.++..+..+...|.. .+++++|...|++..+ .+..++..|...|.. .+++++|...|++..+. .+
T Consensus 37 g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~------~~ 110 (490)
T 2xm6_A 37 GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK------GL 110 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT------TC
T ss_pred CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC------CC
Confidence 345555555555555 5666666666665443 344556666666666 66677777777666542 24
Q ss_pred hhhHHHHHHHHHh----cCChhhHHHHhcccC-CCCchhHHHHHHHHHh----cCChHHHHHHHhhCCC-CChhhHHHHH
Q 007519 235 VQSCNSMINGYIR----FGRLEEAQNLFDTVP-VRDEISWTSMIDGYLS----VGQVSNAYYLFHNMPD-RDAVAWTAMI 304 (600)
Q Consensus 235 ~~~~~~l~~~~~~----~~~~~~a~~~~~~~~-~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~-~~~~~~~~li 304 (600)
...+..|...|.. .+++++|..+|+... ..++..+..+...|.. .+++++|+..|++..+ .+..++..+.
T Consensus 111 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg 190 (490)
T 2xm6_A 111 PQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLG 190 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4555556666665 566777777766655 3345556666666665 6677777777766543 4566677777
Q ss_pred HHHHh----CCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhc----ccchhhhHHHHHHHhhhcCCCchhHHHHHHHH
Q 007519 305 SGLVQ----NELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGA----TANIDLGRQIHCVLMKTESESDLILENCLISM 376 (600)
Q Consensus 305 ~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 376 (600)
..|.. .+++++|+..|++..+.| +...+..+...+.. .++.++|..+++...+.+ +...+..+...
T Consensus 191 ~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~ 264 (490)
T 2xm6_A 191 YMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYI 264 (490)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHH
T ss_pred HHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHH
Confidence 77776 788888888888877754 44555556666654 678888888888777654 34455566666
Q ss_pred HHh----cCChHHHHHHHhcCC-CCChhhHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCCCChhHHHHHHHHhccc
Q 007519 377 YAK----CGVIDNAYNIFSNMV-SRDLVSWNSMVMGFSHH-----GLANETLKVFESMLESGTHPNSVTFLGILSACSHA 446 (600)
Q Consensus 377 ~~~----~~~~~~A~~~~~~~~-~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 446 (600)
|.. .+++++|...|++.. ..+...+..+...|... +++++|+..|++..+.| +...+..+...+...
T Consensus 265 y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~ 341 (490)
T 2xm6_A 265 LEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRL 341 (490)
T ss_dssp HHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHS
T ss_pred HHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhC
Confidence 766 789999999998876 44667777888888877 89999999999998865 344556666666654
Q ss_pred C---chHHHHHHHHHHHhhcCCCCCcchHHHHHHHHhh----cCChHHHHHHHHhCCCCCCHHHHHHHHHHHhhh----h
Q 007519 447 G---LVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGR----AGKIKEAEEFVLRLPFEPDHRIWGALLGACGFC----E 515 (600)
Q Consensus 447 g---~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~----~ 515 (600)
| +.++|.++|++..+. .++..+..|+..|.. .+++++|.+.+++.....+...+..+...+. . .
T Consensus 342 g~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~~y~-~g~g~~ 416 (490)
T 2xm6_A 342 GSEEEHKKAVEWFRKAAAK----GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYY-YGLGVE 416 (490)
T ss_dssp CCHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HTSSSC
T ss_pred CCcccHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH-cCCCCC
Confidence 5 889999999999874 357788899999988 8999999999988754446777777777777 6 7
Q ss_pred CCHHHHHHHHHHHHhhCCC---CCCcHHHHhHHHHh
Q 007519 516 GNAEIAEHAAKRLLELDPL---NAPAHVVLCNIYAA 548 (600)
Q Consensus 516 g~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~ 548 (600)
+|.++|+..|+++.+..|+ ++.....++.++..
T Consensus 417 ~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~ 452 (490)
T 2xm6_A 417 RDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTAK 452 (490)
T ss_dssp CCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHH
T ss_pred CCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHh
Confidence 8999999999999999853 66677777766554
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.80 E-value=5.7e-18 Score=165.15 Aligned_cols=256 Identities=13% Similarity=0.032 Sum_probs=180.8
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhcccchhhhHHHHHHHhhhcCCCchhHHHHHHHHHH
Q 007519 299 AWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYA 378 (600)
Q Consensus 299 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 378 (600)
.+..+...+.+.|++++|+..|+++.+.. +.+...+..+..++...|+++.|...+..+.+... .+..++..+...+.
T Consensus 66 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~ 143 (368)
T 1fch_A 66 QPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKP-DNQTALMALAVSFT 143 (368)
T ss_dssp SHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHH
Confidence 44455555555555555555555555542 22334444555555555555555555555554432 24445555556666
Q ss_pred hcCChHHHHHHHhcCC---CCChhhHHH---------------HHHHHHhcCChHHHHHHHHHHHHcCCCC-ChhHHHHH
Q 007519 379 KCGVIDNAYNIFSNMV---SRDLVSWNS---------------MVMGFSHHGLANETLKVFESMLESGTHP-NSVTFLGI 439 (600)
Q Consensus 379 ~~~~~~~A~~~~~~~~---~~~~~~~~~---------------l~~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~l 439 (600)
..|++++|...++++. +.+...+.. .+..+...|++++|+..|+++.+..... +..++..+
T Consensus 144 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l 223 (368)
T 1fch_A 144 NESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGL 223 (368)
T ss_dssp HTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHH
Confidence 6666666666665543 111111111 1233338899999999999998853111 46788888
Q ss_pred HHHhcccCchHHHHHHHHHHHhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHhhhhC
Q 007519 440 LSACSHAGLVSRGWELFNAMFDVYKIQP-GPEHYVSMINLLGRAGKIKEAEEFVLRLP-FEP-DHRIWGALLGACGFCEG 516 (600)
Q Consensus 440 ~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~g 516 (600)
...+...|++++|...++++.+. .| +...+..++..|...|++++|.+.++++. ..| +...+..+...+. ..|
T Consensus 224 ~~~~~~~g~~~~A~~~~~~al~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~-~~g 299 (368)
T 1fch_A 224 GVLFNLSGEYDKAVDCFTAALSV---RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCI-NLG 299 (368)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh---CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH-HCC
Confidence 99999999999999999999875 45 57789999999999999999999999874 344 5677888888888 999
Q ss_pred CHHHHHHHHHHHHhhCCCC-----------CCcHHHHhHHHHhhCCcHHHHHHHH
Q 007519 517 NAEIAEHAAKRLLELDPLN-----------APAHVVLCNIYAASGRHVEEHKLRM 560 (600)
Q Consensus 517 ~~~~a~~~~~~~~~~~p~~-----------~~~~~~l~~~~~~~g~~~~A~~~~~ 560 (600)
++++|+..+++++++.|++ +.++..++.+|...|++++|..+++
T Consensus 300 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 354 (368)
T 1fch_A 300 AHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADA 354 (368)
T ss_dssp CHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHT
T ss_pred CHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHH
Confidence 9999999999999998877 6889999999999999999999764
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.80 E-value=2.9e-17 Score=157.45 Aligned_cols=263 Identities=13% Similarity=0.029 Sum_probs=225.6
Q ss_pred CChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhcccchhhhHHHHHHHhhhcCCCchhHHHHHH
Q 007519 295 RDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLI 374 (600)
Q Consensus 295 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 374 (600)
.+...+..++..+...|++++|+.+|+++.+.. +.+...+..+..++...|+.+.|...+..+.+.... +...+..+.
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~ 97 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPS-NPVSWFAVG 97 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-STHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHHHH
Confidence 456677788888999999999999999998863 444556777888889999999999999998886543 567788899
Q ss_pred HHHHhcC-ChHHHHHHHhcCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccCchH
Q 007519 375 SMYAKCG-VIDNAYNIFSNMV---SRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVS 450 (600)
Q Consensus 375 ~~~~~~~-~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~ 450 (600)
..+...| ++++|...|+++. +.+...|..+...+...|++++|+..++++.+.. +.+...+..+...+...|+++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHH
Confidence 9999999 9999999999876 4567789999999999999999999999999863 444567777889999999999
Q ss_pred HHHHHHHHHHhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhCC-C----------CCCHHHHHHHHHHHhhhhCCH
Q 007519 451 RGWELFNAMFDVYKIQP-GPEHYVSMINLLGRAGKIKEAEEFVLRLP-F----------EPDHRIWGALLGACGFCEGNA 518 (600)
Q Consensus 451 ~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~----------~p~~~~~~~l~~~~~~~~g~~ 518 (600)
+|.+.++++.+. .| +...+..++..+...|++++|.+.+++.. . +.....+..+...+. ..|++
T Consensus 177 ~A~~~~~~al~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~ 252 (330)
T 3hym_B 177 LAERFFSQALSI---APEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCR-KLKKY 252 (330)
T ss_dssp HHHHHHHHHHTT---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHH-HTTCH
T ss_pred HHHHHHHHHHHh---CCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHH-HhcCH
Confidence 999999999864 45 57889999999999999999999998763 1 233567888888888 99999
Q ss_pred HHHHHHHHHHHhhCCCCCCcHHHHhHHHHhhCCcHHHHHHHHHHhh
Q 007519 519 EIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGL 564 (600)
Q Consensus 519 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 564 (600)
++|+..++++++..|+++.++..++.++...|++++|.+.++...+
T Consensus 253 ~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 298 (330)
T 3hym_B 253 AEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALG 298 (330)
T ss_dssp HHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999998865544
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.78 E-value=1e-17 Score=163.29 Aligned_cols=284 Identities=12% Similarity=0.049 Sum_probs=133.9
Q ss_pred HhcCChhHHHH-HHccCCC--C-----CcchHHHHHHHHHhcCChhHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHhc
Q 007519 177 CRAGEVEEGYC-LFRRMPR--K-----NVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRF 248 (600)
Q Consensus 177 ~~~g~~~~A~~-~~~~~~~--~-----~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 248 (600)
...|++++|.. .|++... + +...+..+...+...|++++|+..|+++.+. .+.+..++..+..++...
T Consensus 36 ~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~l~~~~~~~ 111 (368)
T 1fch_A 36 PWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQ----DPKHMEAWQYLGTTQAEN 111 (368)
T ss_dssp ----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHS----CTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHC
Confidence 34456666666 5554432 1 2344566666666666666666666666653 122344555555555555
Q ss_pred CChhhHHHHhcccCCCCchhHHHHHHHHHhcCChHHHHHHHhhCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCC
Q 007519 249 GRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGV 328 (600)
Q Consensus 249 ~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 328 (600)
|++++|...++.+... ...+..++..+...+...|++++|+..++++....
T Consensus 112 g~~~~A~~~~~~al~~----------------------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~- 162 (368)
T 1fch_A 112 EQELLAISALRRCLEL----------------------------KPDNQTALMALAVSFTNESLQRQACEILRDWLRYT- 162 (368)
T ss_dssp TCHHHHHHHHHHHHHH----------------------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-
T ss_pred cCHHHHHHHHHHHHhc----------------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 5555555555544310 11244556666666666777777777777666642
Q ss_pred CCChhH-HHH---------------HHHHHhcccchhhhHHHHHHHhhhcCCCchhHHHHHHHHHHhcCChHHHHHHHhc
Q 007519 329 PPLNAT-FSV---------------LFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSN 392 (600)
Q Consensus 329 ~p~~~~-~~~---------------l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 392 (600)
|+... +.. .+..+...|+++.|...+..+.+.....
T Consensus 163 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~--------------------------- 214 (368)
T 1fch_A 163 -PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTS--------------------------- 214 (368)
T ss_dssp -TTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTS---------------------------
T ss_pred -cCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCc---------------------------
Confidence 22211 110 1111123444444444444433332211
Q ss_pred CCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCC-Ccch
Q 007519 393 MVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQP-GPEH 471 (600)
Q Consensus 393 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~ 471 (600)
++..++..+...+...|++++|+..|+++.... +.+...+..+...+...|++++|...++++.+. .| +...
T Consensus 215 ---~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~~~~~~~ 287 (368)
T 1fch_A 215 ---IDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALEL---QPGYIRS 287 (368)
T ss_dssp ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHH
T ss_pred ---ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCcHHH
Confidence 023444455555555555555555555554431 223344445555555555555555555555442 23 3445
Q ss_pred HHHHHHHHhhcCChHHHHHHHHhCC-CCC------------CHHHHHHHHHHHhhhhCCHHHHHHHHHHHH
Q 007519 472 YVSMINLLGRAGKIKEAEEFVLRLP-FEP------------DHRIWGALLGACGFCEGNAEIAEHAAKRLL 529 (600)
Q Consensus 472 ~~~l~~~~~~~g~~~~A~~~~~~~~-~~p------------~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~ 529 (600)
+..++.+|.+.|++++|.+.++++. ..| ...+|..+..++. ..|+.++|..++++.+
T Consensus 288 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~l 357 (368)
T 1fch_A 288 RYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALS-MLGQSDAYGAADARDL 357 (368)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHH-HHTCGGGHHHHHTTCH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHH-HhCChHhHHHhHHHHH
Confidence 5555555555555555555554432 111 1344555555555 5555555555554443
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.8e-16 Score=147.98 Aligned_cols=241 Identities=10% Similarity=-0.020 Sum_probs=172.6
Q ss_pred HHHHHhcCChHHHHHHHhhCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhcccchhhhH
Q 007519 273 IDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGR 352 (600)
Q Consensus 273 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~ 352 (600)
..+|...|+++.|+..++....++..++..+...+...|+.++|++.++++...+..|+
T Consensus 41 ~r~yi~~g~~~~al~~~~~~~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~--------------------- 99 (291)
T 3mkr_A 41 YRAYLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVT--------------------- 99 (291)
T ss_dssp HHHHHHTTCHHHHHHHSCTTSCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCS---------------------
T ss_pred HHHHHHCCCHHHHHHHhcccCChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCC---------------------
Confidence 34444444444444444333223334455555555566666666666666655544443
Q ss_pred HHHHHHhhhcCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 007519 353 QIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPN 432 (600)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~ 432 (600)
+...+..+..++...|++++|.+.+++ +.+...+..++..+.+.|++++|.+.|+++.+. .|+
T Consensus 100 -------------~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~ 162 (291)
T 3mkr_A 100 -------------NTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ--DED 162 (291)
T ss_dssp -------------CHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT
T ss_pred -------------CHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CcC
Confidence 334455667788889999999999998 678889999999999999999999999999986 465
Q ss_pred hhHH---HHHHHHhcccCchHHHHHHHHHHHhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHH
Q 007519 433 SVTF---LGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLP-FEP-DHRIWGAL 507 (600)
Q Consensus 433 ~~~~---~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l 507 (600)
.... ..++..+...|++++|..+|+++.+. .+.++..++.++.++.+.|++++|.+.++++. ..| +..++..+
T Consensus 163 ~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l 240 (291)
T 3mkr_A 163 ATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINL 240 (291)
T ss_dssp CHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 4322 12334444569999999999999985 23368889999999999999999999999964 445 56788888
Q ss_pred HHHHhhhhCCHHH-HHHHHHHHHhhCCCCCCcHHHHhHHHHhhCCcHHHHHH
Q 007519 508 LGACGFCEGNAEI-AEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKL 558 (600)
Q Consensus 508 ~~~~~~~~g~~~~-a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 558 (600)
+..+. ..|+..+ +.++++++++++|+++.+.. ...+.+.++++..-
T Consensus 241 ~~~~~-~~g~~~eaa~~~~~~~~~~~P~~~~~~d----~~~~~~~fd~~~~~ 287 (291)
T 3mkr_A 241 VVLSQ-HLGKPPEVTNRYLSQLKDAHRSHPFIKE----YRAKENDFDRLVLQ 287 (291)
T ss_dssp HHHHH-HTTCCHHHHHHHHHHHHHHCTTCHHHHH----HHHHHHHHHHHHHH
T ss_pred HHHHH-HcCCCHHHHHHHHHHHHHhCCCChHHHH----HHHHHHHHHHHHHH
Confidence 88888 8888865 67899999999998776544 45566677766653
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.3e-15 Score=154.22 Aligned_cols=351 Identities=11% Similarity=-0.015 Sum_probs=290.9
Q ss_pred CCcchHHHHHHHHHh----cCChhHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHh----cCChhhHHHHhcccC-CCC
Q 007519 195 KNVVSWTAMIGGFAW----NGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIR----FGRLEEAQNLFDTVP-VRD 265 (600)
Q Consensus 195 ~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~-~~~ 265 (600)
.+..++..+...|.. .+++++|+..|+...+. .+...+..|...|.. .+++++|..+|++.. ..+
T Consensus 37 g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~------~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~ 110 (490)
T 2xm6_A 37 GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ------GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGL 110 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC------CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 466777888888888 89999999999999863 356788888888988 899999999999887 446
Q ss_pred chhHHHHHHHHHh----cCChHHHHHHHhhCCC-CChhhHHHHHHHHHh----CCChhHHHHHHHHHHHCCCCCChhHHH
Q 007519 266 EISWTSMIDGYLS----VGQVSNAYYLFHNMPD-RDAVAWTAMISGLVQ----NELFVEATYLFMEMRAHGVPPLNATFS 336 (600)
Q Consensus 266 ~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~~~~ 336 (600)
+..+..|...|.. .+++++|+..|++..+ .+..++..+...|.. .+++++|+..|++..+.| +...+.
T Consensus 111 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~ 187 (490)
T 2xm6_A 111 PQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCN 187 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 7778888888988 8899999999998765 466788888888887 789999999999998875 566777
Q ss_pred HHHHHHhc----ccchhhhHHHHHHHhhhcCCCchhHHHHHHHHHHh----cCChHHHHHHHhcCC-CCChhhHHHHHHH
Q 007519 337 VLFGAAGA----TANIDLGRQIHCVLMKTESESDLILENCLISMYAK----CGVIDNAYNIFSNMV-SRDLVSWNSMVMG 407 (600)
Q Consensus 337 ~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~-~~~~~~~~~l~~~ 407 (600)
.+...+.. .++.++|...+....+.+ +...+..+...|.. .+++++|..+|++.. ..+...+..+...
T Consensus 188 ~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~ 264 (490)
T 2xm6_A 188 QLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYI 264 (490)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 77777776 889999999999888765 45666777888876 889999999999876 4566777888888
Q ss_pred HHh----cCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhccc-----CchHHHHHHHHHHHhhcCCCCCcchHHHHHHH
Q 007519 408 FSH----HGLANETLKVFESMLESGTHPNSVTFLGILSACSHA-----GLVSRGWELFNAMFDVYKIQPGPEHYVSMINL 478 (600)
Q Consensus 408 ~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~-----g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 478 (600)
+.. .++.++|+..|++..+.| +...+..+...+... +++++|...++++.+. .++..+..|+..
T Consensus 265 y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~ 337 (490)
T 2xm6_A 265 LEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ----GDATAQANLGAI 337 (490)
T ss_dssp HHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT----TCHHHHHHHHHH
T ss_pred HHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc----CCHHHHHHHHHH
Confidence 887 899999999999998764 445566666666666 8999999999999874 245678889999
Q ss_pred HhhcC---ChHHHHHHHHhCCCCCCHHHHHHHHHHHhhh----hCCHHHHHHHHHHHHhhCCCCCCcHHHHhHHHHh---
Q 007519 479 LGRAG---KIKEAEEFVLRLPFEPDHRIWGALLGACGFC----EGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAA--- 548 (600)
Q Consensus 479 ~~~~g---~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~--- 548 (600)
|...| ++++|.+.+++.....+...+..+...+. . .++.++|+..++++.+.. ++..+..|+.+|..
T Consensus 338 y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~-~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g 414 (490)
T 2xm6_A 338 YFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALL-QGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGLG 414 (490)
T ss_dssp HHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSS
T ss_pred HHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCC
Confidence 88867 88999999988754467778888888887 6 789999999999998864 67889999999998
Q ss_pred -hCCcHHHHHHHHHHhhcCC
Q 007519 549 -SGRHVEEHKLRMDMGLKGV 567 (600)
Q Consensus 549 -~g~~~~A~~~~~~~~~~~~ 567 (600)
.+++++|..+++...+.+.
T Consensus 415 ~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 415 VERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp SCCCHHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHCCC
Confidence 8999999998888777663
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.77 E-value=2e-15 Score=154.53 Aligned_cols=404 Identities=11% Similarity=0.036 Sum_probs=256.2
Q ss_pred CcccHHHHHHHHHhcCCHhHHHHHHHhccc--C-CchhHHHHHHHHHhcCChhHHHHHHccCCC--CCcchHHHHHHHH-
Q 007519 134 NVISWNAMIAGYVECCMMGEAIVLFEEMEE--R-NVVTWTSMISGYCRAGEVEEGYCLFRRMPR--KNVVSWTAMIGGF- 207 (600)
Q Consensus 134 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~- 207 (600)
+...|..++. +.+.|++++|..+|+.+.+ | +...|..++..+.+.|++++|..+|++... |+...|...+...
T Consensus 12 ~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~lw~~~~~~~~ 90 (530)
T 2ooe_A 12 DLDAWSILIR-EAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLSYVR 90 (530)
T ss_dssp CHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHHHHHHHHHHH
T ss_pred CHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 4556677776 3667888888888888774 3 345677778888888888888888887765 5555566555433
Q ss_pred HhcCChhHHHH----HHHHHHhhhcCCCCC-ChhhHHHHHHHHHh---------cCChhhHHHHhcccCCC-Cc---hhH
Q 007519 208 AWNGFHKESLL----LFIEMKGICDNGNNC-NVQSCNSMINGYIR---------FGRLEEAQNLFDTVPVR-DE---ISW 269 (600)
Q Consensus 208 ~~~~~~~~a~~----~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~~-~~---~~~ 269 (600)
...|+.+.|.+ +|+..... .|..| +...|...+....+ .|+++.|..+|++.... .. ..|
T Consensus 91 ~~~~~~~~a~~~~~~~~~~al~~--~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~ 168 (530)
T 2ooe_A 91 ETKGKLPSYKEKMAQAYDFALDK--IGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLW 168 (530)
T ss_dssp HHTTTSTTHHHHHHHHHHHHHHH--TTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHH
T ss_pred HHccchhhHHHHHHHHHHHHHHH--CCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHH
Confidence 34566666655 66665543 13333 34556566555443 56677777777766531 11 112
Q ss_pred HHHHHHHHhcCChHHHHHHHhhCCCCChhhHHHHHHHHHhCCChhHHHHHHHHH------HHCC---CCCCh--------
Q 007519 270 TSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEM------RAHG---VPPLN-------- 332 (600)
Q Consensus 270 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m------~~~g---~~p~~-------- 332 (600)
..........|. ..+.. ++. ...+++..|..++..+ .+.. ++|+.
T Consensus 169 ~~~~~~e~~~~~-~~~~~---------------~l~--~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~ 230 (530)
T 2ooe_A 169 RDYNKYEEGINI-HLAKK---------------MIE--DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQV 230 (530)
T ss_dssp HHHHHHHHHHCH-HHHHH---------------HHH--TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHH
T ss_pred HHHHHHHHhhch-hHHHH---------------HHH--HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHH
Confidence 111111000000 00001 110 1234456666665542 2211 23331
Q ss_pred hHHHHHHHHHhc----ccch----hhhHHHHHHHhhhcCCCchhHHHHHHHHHHh-------cCChH-------HHHHHH
Q 007519 333 ATFSVLFGAAGA----TANI----DLGRQIHCVLMKTESESDLILENCLISMYAK-------CGVID-------NAYNIF 390 (600)
Q Consensus 333 ~~~~~l~~~~~~----~~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~-------~A~~~~ 390 (600)
..|...+..... .++. ..+..+++.+..... .+..+|..++..+.+ .|+++ +|..+|
T Consensus 231 ~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p-~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~ 309 (530)
T 2ooe_A 231 DMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLG-HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIY 309 (530)
T ss_dssp HHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHH
Confidence 233333322111 1122 355667777766533 356777777777765 68877 889999
Q ss_pred hcCC----CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh--hHHHHHHHHhcccCchHHHHHHHHHHHhhcC
Q 007519 391 SNMV----SRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNS--VTFLGILSACSHAGLVSRGWELFNAMFDVYK 464 (600)
Q Consensus 391 ~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 464 (600)
++.. +.+...|..++..+.+.|++++|..+|+++.+. .|+. ..|..++..+.+.|++++|.++|+++.+.
T Consensus 310 ~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~-- 385 (530)
T 2ooe_A 310 ERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED-- 385 (530)
T ss_dssp HHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--
Confidence 8765 335778888999999999999999999999874 5653 46777788888889999999999998864
Q ss_pred CCC-CcchHHHHHHH-HhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCC---
Q 007519 465 IQP-GPEHYVSMINL-LGRAGKIKEAEEFVLRLP-FEP-DHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAP--- 537 (600)
Q Consensus 465 ~~p-~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~--- 537 (600)
.| +...+...+.. +...|+.++|.++|++.. ..| +...|..++.... ..|+.++|..+|++++...|.++.
T Consensus 386 -~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~-~~g~~~~Ar~~~~~al~~~~~~~~~~~ 463 (530)
T 2ooe_A 386 -ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLS-HLNEDNNTRVLFERVLTSGSLPPEKSG 463 (530)
T ss_dssp -TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TTTCHHHHHHHHHHHHHSCCSCGGGCH
T ss_pred -cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHH-hCCCHhhHHHHHHHHHhccCCCHHHHH
Confidence 34 23333333322 336899999999998763 344 5677888888777 889999999999999998776655
Q ss_pred -cHHHHhHHHHhhCCcHHHHHHHHHHhhc
Q 007519 538 -AHVVLCNIYAASGRHVEEHKLRMDMGLK 565 (600)
Q Consensus 538 -~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 565 (600)
.+...+......|+.+.+..+.+.+.+.
T Consensus 464 ~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 464 EIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp HHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 6667777777889999998877766544
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.8e-16 Score=160.18 Aligned_cols=253 Identities=11% Similarity=-0.022 Sum_probs=127.8
Q ss_pred CCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHh----cccchhhhHHHHHHHhhhcCCCchhHHHHHHHHHHhcCChHH
Q 007519 310 NELFVEATYLFMEMRAHGVPPLNATFSVLFGAAG----ATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDN 385 (600)
Q Consensus 310 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 385 (600)
.++.++|++.+++..+.. +.+...+..+...+. ..++.+.|...++...+.... +..++..+...|...|++++
T Consensus 188 ~~~~~~al~~~~~al~l~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~-~~~~~~~lg~~~~~~~~~~~ 265 (472)
T 4g1t_A 188 WPPSQNAIDPLRQAIRLN-PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPG-VTDVLRSAAKFYRRKDEPDK 265 (472)
T ss_dssp SCCCCCTHHHHHHHHHHC-SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHH
T ss_pred chHHHHHHHHHHHHhhcC-CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCcc-HHHHHHHHHHHHHHcCchHH
Confidence 445555555555554431 112222222222222 223445555555544443322 33444555555555666666
Q ss_pred HHHHHhcCC---CCChhhHHHHHHHHHh-------------------cCChHHHHHHHHHHHHcCCCCChhHHHHHHHHh
Q 007519 386 AYNIFSNMV---SRDLVSWNSMVMGFSH-------------------HGLANETLKVFESMLESGTHPNSVTFLGILSAC 443 (600)
Q Consensus 386 A~~~~~~~~---~~~~~~~~~l~~~~~~-------------------~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 443 (600)
|...+++.. +.+..++..+..+|.. .+..+.|...+++..+.. +.+...+..+...+
T Consensus 266 A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~ 344 (472)
T 4g1t_A 266 AIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLH 344 (472)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHH
T ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHH
Confidence 655555543 2333444444433321 223566777777776643 33445667777788
Q ss_pred cccCchHHHHHHHHHHHhhcCCCCC--cchHHHHHHH-HhhcCChHHHHHHHHhCC-CCCCHHHHHHHHHHHhhhhCCHH
Q 007519 444 SHAGLVSRGWELFNAMFDVYKIQPG--PEHYVSMINL-LGRAGKIKEAEEFVLRLP-FEPDHRIWGALLGACGFCEGNAE 519 (600)
Q Consensus 444 ~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~-~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~~~~~~~~g~~~ 519 (600)
...|++++|.+.|+++.+. ...|. ...+..++.. +...|++++|++.+++.. ..|+..... +...
T Consensus 345 ~~~~~~~~A~~~~~kaL~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~----------~~~~ 413 (472)
T 4g1t_A 345 ALADQYEEAEYYFQKEFSK-ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKE----------KMKD 413 (472)
T ss_dssp HHTTCHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHH----------HHHH
T ss_pred HHhccHHHHHHHHHHHHhc-CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHH----------HHHH
Confidence 8888888888888887754 22221 1123333332 346778888888887753 556543222 2233
Q ss_pred HHHHHHHHHHhhCCCCCCcHHHHhHHHHhhCCcHHHHHHHHHHhhcCCccCCCcceE
Q 007519 520 IAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWL 576 (600)
Q Consensus 520 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 576 (600)
.+..++++.++.+|+++.++..|+.+|...|++++|.+.++...+.+-......+|+
T Consensus 414 ~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~ 470 (472)
T 4g1t_A 414 KLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWN 470 (472)
T ss_dssp HHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-----------------------
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcC
Confidence 455667778888999999999999999999999999998877666554333334443
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.76 E-value=3.4e-17 Score=159.48 Aligned_cols=255 Identities=12% Similarity=0.011 Sum_probs=177.8
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhcccchhhhHHHHHHHhhhcCCCchhHHHHHHHHHH
Q 007519 299 AWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYA 378 (600)
Q Consensus 299 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 378 (600)
.+..+...+.+.|++++|+..|+++.+.. +.+...+..+..++...|+++.|...++.+.+... .+...+..+..+|.
T Consensus 67 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~ 144 (365)
T 4eqf_A 67 GAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQP-NNLKALMALAVSYT 144 (365)
T ss_dssp THHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHH
Confidence 34455555555555555555555555432 22344455555555555555555555555554432 23455566666666
Q ss_pred hcCChHHHHHHHhcCCC--C-C----------hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC--ChhHHHHHHHHh
Q 007519 379 KCGVIDNAYNIFSNMVS--R-D----------LVSWNSMVMGFSHHGLANETLKVFESMLESGTHP--NSVTFLGILSAC 443 (600)
Q Consensus 379 ~~~~~~~A~~~~~~~~~--~-~----------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p--~~~~~~~l~~~~ 443 (600)
..|++++|...|+++.. | + ...+..+...+...|++++|+.+++++.+.. +. +...+..+...+
T Consensus 145 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~l~~~~ 223 (365)
T 4eqf_A 145 NTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQN-GDMIDPDLQTGLGVLF 223 (365)
T ss_dssp HTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHS-CSSCCHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhC-cCccCHHHHHHHHHHH
Confidence 66666666666666541 1 1 2233445778889999999999999998863 22 567888888999
Q ss_pred cccCchHHHHHHHHHHHhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHhhhhCCHHH
Q 007519 444 SHAGLVSRGWELFNAMFDVYKIQP-GPEHYVSMINLLGRAGKIKEAEEFVLRLP-FEP-DHRIWGALLGACGFCEGNAEI 520 (600)
Q Consensus 444 ~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~g~~~~ 520 (600)
...|++++|.+.++++.+. .| +..++..++.+|...|++++|.+.++++. ..| +..++..+...+. ..|++++
T Consensus 224 ~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~-~~g~~~~ 299 (365)
T 4eqf_A 224 HLSGEFNRAIDAFNAALTV---RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCI-NLGAYRE 299 (365)
T ss_dssp HHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCCHH
T ss_pred HHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHH-HCCCHHH
Confidence 9999999999999999875 45 57889999999999999999999998874 445 4778888888888 9999999
Q ss_pred HHHHHHHHHhhCCC------------CCCcHHHHhHHHHhhCCcHHHHHHHH
Q 007519 521 AEHAAKRLLELDPL------------NAPAHVVLCNIYAASGRHVEEHKLRM 560 (600)
Q Consensus 521 a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~ 560 (600)
|+..+++++++.|+ +..++..++.++...|+.+.+..+.+
T Consensus 300 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 351 (365)
T 4eqf_A 300 AVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANL 351 (365)
T ss_dssp HHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHT
T ss_pred HHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 99999999998875 36778999999999999999888664
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.75 E-value=3e-15 Score=153.29 Aligned_cols=402 Identities=11% Similarity=0.084 Sum_probs=208.9
Q ss_pred CcchHHHHHHHHHcCCChhHHHHHhhhcCC--C-ChhhHHHHHHHHHhcCChHHHHHHhhcCCC--CCceeHHHHHHHH-
Q 007519 41 NVVSYNAMLSGFLQNGRLSEARRLFEEMPE--R-NVVSWTAMICGLADAGRVCEARKLFEEMPE--RNVVSWNSMVVGL- 114 (600)
Q Consensus 41 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~- 114 (600)
+..+|..++.. .+.|++++|..+|+++.+ | +...|..++..+.+.|++++|+.+|+++.+ |+...|..++...
T Consensus 12 ~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~lw~~~~~~~~ 90 (530)
T 2ooe_A 12 DLDAWSILIRE-AQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLSYVR 90 (530)
T ss_dssp CHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 56678888874 678899999999998876 3 445788888888888999999999988876 7666677666533
Q ss_pred HHCCChhHHHH----HhhcCCC------CCcccHHHHHHHHHh---------cCCHhHHHHHHHhccc-CCc---hhHHH
Q 007519 115 IRNGELNEARK----VFNSMPI------KNVISWNAMIAGYVE---------CCMMGEAIVLFEEMEE-RNV---VTWTS 171 (600)
Q Consensus 115 ~~~~~~~~a~~----~~~~~~~------~~~~~~~~l~~~~~~---------~~~~~~A~~~~~~~~~-~~~---~~~~~ 171 (600)
...|+.+.|.+ +|++... ++...|...+..... .|+++.|..+|++..+ |.. ..|..
T Consensus 91 ~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~~ 170 (530)
T 2ooe_A 91 ETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRD 170 (530)
T ss_dssp HHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHHH
T ss_pred HHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHHH
Confidence 35677777665 5554321 234455555555443 5677777777777664 221 11111
Q ss_pred HHHHHHhcCChhHHHHHHccCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhh---hcCC---CCCC--------hhh
Q 007519 172 MISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGI---CDNG---NNCN--------VQS 237 (600)
Q Consensus 172 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---~~~~---~~~~--------~~~ 237 (600)
........|. ..+..++. ...+++..|..++++.... ++.. ++|+ ...
T Consensus 171 ~~~~e~~~~~-~~~~~~l~-----------------~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~ 232 (530)
T 2ooe_A 171 YNKYEEGINI-HLAKKMIE-----------------DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDM 232 (530)
T ss_dssp HHHHHHHHCH-HHHHHHHH-----------------TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHH
T ss_pred HHHHHHhhch-hHHHHHHH-----------------HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHH
Confidence 1111000110 01111111 0234455666555542211 1111 2333 123
Q ss_pred HHHHHHHHHhc----CCh----hhHHHHhcccC---CCCchhHHHHHHHHHh-------cCChH-------HHHHHHhhC
Q 007519 238 CNSMINGYIRF----GRL----EEAQNLFDTVP---VRDEISWTSMIDGYLS-------VGQVS-------NAYYLFHNM 292 (600)
Q Consensus 238 ~~~l~~~~~~~----~~~----~~a~~~~~~~~---~~~~~~~~~l~~~~~~-------~~~~~-------~A~~~~~~~ 292 (600)
|...+...... ++. +++..+|++.. +.++..|..++..+.+ .|+++ +|..+|++.
T Consensus 233 w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~A 312 (530)
T 2ooe_A 233 WKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERA 312 (530)
T ss_dssp HHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHH
Confidence 33333322221 122 24555555554 4456666666666654 56665 666666665
Q ss_pred CC---C-ChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCh--hHHHHHHHHHhcccchhhhHHHHHHHhhhcCCCc
Q 007519 293 PD---R-DAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLN--ATFSVLFGAAGATANIDLGRQIHCVLMKTESESD 366 (600)
Q Consensus 293 ~~---~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 366 (600)
.. | +...|..++..+.+.|++++|..+|+++.+. .|+. ..|......+.+.|+++.|..+++.+.+.... +
T Consensus 313 l~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~-~ 389 (530)
T 2ooe_A 313 ISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-R 389 (530)
T ss_dssp TTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTC-C
T ss_pred HHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCC-c
Confidence 42 2 3456666666666777777777777776663 3432 24544555555555566666655555443211 1
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhccc
Q 007519 367 LILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHA 446 (600)
Q Consensus 367 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 446 (600)
...+...... .+...|+.++|..+|++..+.. +.+...+..++..+...
T Consensus 390 ~~~~~~~a~~------------------------------~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~ 438 (530)
T 2ooe_A 390 HHVYVTAALM------------------------------EYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHL 438 (530)
T ss_dssp THHHHHHHHH------------------------------HHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTT
T ss_pred hHHHHHHHHH------------------------------HHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhC
Confidence 1111111111 1123455555555555554431 22334444555555555
Q ss_pred CchHHHHHHHHHHHhhcCCCCC--cchHHHHHHHHhhcCChHHHHHHHHhC
Q 007519 447 GLVSRGWELFNAMFDVYKIQPG--PEHYVSMINLLGRAGKIKEAEEFVLRL 495 (600)
Q Consensus 447 g~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~ 495 (600)
|+.++|..+|+++.......|+ ...|...+......|+.+.+.++.+++
T Consensus 439 g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~ 489 (530)
T 2ooe_A 439 NEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 489 (530)
T ss_dssp TCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHH
T ss_pred CCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5555555555555543222221 224444455555555555555555443
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.73 E-value=2.1e-16 Score=151.22 Aligned_cols=255 Identities=9% Similarity=-0.014 Sum_probs=175.1
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhcccchhhhHHHHHHHhhhcCCCchhHHHHHHHHHHh
Q 007519 300 WTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAK 379 (600)
Q Consensus 300 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 379 (600)
+..+...+...|++++|+.+|+++.+.. +.+...+..+..++...|+++.|...++.+.+... .+...+..+...+..
T Consensus 24 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~ 101 (327)
T 3cv0_A 24 PMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP-KDIAVHAALAVSHTN 101 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc-CCHHHHHHHHHHHHH
Confidence 3344444445555555555555544431 22333444444445555555555555554444322 134444555555556
Q ss_pred cCChHHHHHHHhcCC---CCChhhHHHH--------------HH-HHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHH
Q 007519 380 CGVIDNAYNIFSNMV---SRDLVSWNSM--------------VM-GFSHHGLANETLKVFESMLESGTHPNSVTFLGILS 441 (600)
Q Consensus 380 ~~~~~~A~~~~~~~~---~~~~~~~~~l--------------~~-~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~ 441 (600)
.|++++|...++++. +.+...+..+ .. .+...|++++|...++++.+.. +.+...+..+..
T Consensus 102 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 180 (327)
T 3cv0_A 102 EHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGV 180 (327)
T ss_dssp TTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence 666666666555543 1222222222 22 3667788999999999998763 446678888889
Q ss_pred HhcccCchHHHHHHHHHHHhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHhhhhCCH
Q 007519 442 ACSHAGLVSRGWELFNAMFDVYKIQP-GPEHYVSMINLLGRAGKIKEAEEFVLRLP-FEP-DHRIWGALLGACGFCEGNA 518 (600)
Q Consensus 442 ~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~g~~ 518 (600)
.+...|++++|.+.++++.+. .| +...+..++..+...|++++|.+.++++. ..| +...+..+...+. ..|++
T Consensus 181 ~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~-~~g~~ 256 (327)
T 3cv0_A 181 LYNLSNNYDSAAANLRRAVEL---RPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYS-NMSQY 256 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCH
T ss_pred HHHHhccHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH-HhccH
Confidence 999999999999999999875 45 57789999999999999999999998864 334 5677888888888 99999
Q ss_pred HHHHHHHHHHHhhCCC------------CCCcHHHHhHHHHhhCCcHHHHHHHHH
Q 007519 519 EIAEHAAKRLLELDPL------------NAPAHVVLCNIYAASGRHVEEHKLRMD 561 (600)
Q Consensus 519 ~~a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 561 (600)
++|+..++++++..|+ ++.++..++.++...|++++|..+++.
T Consensus 257 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 311 (327)
T 3cv0_A 257 DLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQ 311 (327)
T ss_dssp HHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 9999999999999997 678899999999999999999997753
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.73 E-value=2.6e-16 Score=153.21 Aligned_cols=263 Identities=9% Similarity=0.010 Sum_probs=135.7
Q ss_pred cchHHHHHHHHHhcCChhHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHhcCChhhHHHHhcccCCCCchhHHHHHHHH
Q 007519 197 VVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGY 276 (600)
Q Consensus 197 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~ 276 (600)
...|..+...+.+.|++++|+..|+++.+. .+.+..++..+..++...|++++|...|+++...
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~------------ 128 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQ----DPGDAEAWQFLGITQAENENEQAAIVALQRCLEL------------ 128 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHh----CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc------------
Confidence 345666666777777777777777777654 1224455556666666666666666555544310
Q ss_pred HhcCChHHHHHHHhhCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCh-----------hHHHHHHHHHhcc
Q 007519 277 LSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLN-----------ATFSVLFGAAGAT 345 (600)
Q Consensus 277 ~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-----------~~~~~l~~~~~~~ 345 (600)
...+..+|..+...|...|++++|+..|+++.+. .|+. ..+..+...+...
T Consensus 129 ----------------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~l~~~~~~~ 190 (365)
T 4eqf_A 129 ----------------QPNNLKALMALAVSYTNTSHQQDACEALKNWIKQ--NPKYKYLVKNKKGSPGLTRRMSKSPVDS 190 (365)
T ss_dssp ----------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CHHHHCC-------------------CC
T ss_pred ----------------CCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHh--CccchHHHhhhccchHHHHHHHHHHhhh
Confidence 0123445555666666666666666666666553 2221 1112234445555
Q ss_pred cchhhhHHHHHHHhhhcCCC-chhHHHHHHHHHHhcCChHHHHHHHhcCC---CCChhhHHHHHHHHHhcCChHHHHHHH
Q 007519 346 ANIDLGRQIHCVLMKTESES-DLILENCLISMYAKCGVIDNAYNIFSNMV---SRDLVSWNSMVMGFSHHGLANETLKVF 421 (600)
Q Consensus 346 ~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~ 421 (600)
|+++.|...++.+.+..... +..++..+...|...|++++|...|+++. +.+..+|..+..++...|++++|+..|
T Consensus 191 g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 270 (365)
T 4eqf_A 191 SVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAY 270 (365)
T ss_dssp HHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 55555555555555443221 34455555555555566666665555543 334555566666666666666666666
Q ss_pred HHHHHcCCCCChhHHHHHHHHhcccCchHHHHHHHHHHHhhcCCC----------CCcchHHHHHHHHhhcCChHHHHHH
Q 007519 422 ESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQ----------PGPEHYVSMINLLGRAGKIKEAEEF 491 (600)
Q Consensus 422 ~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~----------p~~~~~~~l~~~~~~~g~~~~A~~~ 491 (600)
+++.+.. +.+..++..+..+|...|++++|...|+++.+...-. .+..+|..+..++...|+.+.|.++
T Consensus 271 ~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 349 (365)
T 4eqf_A 271 TRALEIQ-PGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAA 349 (365)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHH
Confidence 6655531 2234455555555666666666666666555431000 0134455555555555555555555
Q ss_pred HHh
Q 007519 492 VLR 494 (600)
Q Consensus 492 ~~~ 494 (600)
.++
T Consensus 350 ~~~ 352 (365)
T 4eqf_A 350 NLG 352 (365)
T ss_dssp HTT
T ss_pred HHh
Confidence 443
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.71 E-value=3.4e-16 Score=146.04 Aligned_cols=243 Identities=10% Similarity=0.021 Sum_probs=179.6
Q ss_pred HHhCCChhHHHHHHHHHHHCCCCCCh--hHHHHHHHHHhcccchhhhHHHHHHHhhhcCCCchhHHHHHHHHHHhcCChH
Q 007519 307 LVQNELFVEATYLFMEMRAHGVPPLN--ATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVID 384 (600)
Q Consensus 307 ~~~~g~~~~a~~~~~~m~~~g~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 384 (600)
....|++..|+..++..... .|+. .....+.+++...|+++.|...++. ..+|+...+..+...+...++.+
T Consensus 9 ~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~ 82 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRD 82 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHH
T ss_pred HHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHH
Confidence 33445555555555443221 2222 1223344455555555555543322 12345566777888888999999
Q ss_pred HHHHHHhcCC-----CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccCchHHHHHHHHHH
Q 007519 385 NAYNIFSNMV-----SRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAM 459 (600)
Q Consensus 385 ~A~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 459 (600)
+|.+.++++. +.+...+..+..++...|++++|++.+++ +.+...+..+...+.+.|++++|.+.++++
T Consensus 83 ~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~ 156 (291)
T 3mkr_A 83 AIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKM 156 (291)
T ss_dssp HHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 9999998764 33566777888999999999999999987 566778888889999999999999999999
Q ss_pred HhhcCCCCCcchH---HHHHHHHhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCC
Q 007519 460 FDVYKIQPGPEHY---VSMINLLGRAGKIKEAEEFVLRLP--FEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPL 534 (600)
Q Consensus 460 ~~~~~~~p~~~~~---~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~ 534 (600)
.+. .|+.... ..++..+...|++++|..+|+++. .+.+...++.+..++. ..|++++|+..++++++.+|+
T Consensus 157 ~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~-~~g~~~eA~~~l~~al~~~p~ 232 (291)
T 3mkr_A 157 QDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHM-AQGRWEAAEGVLQEALDKDSG 232 (291)
T ss_dssp HHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTT
T ss_pred Hhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCC
Confidence 875 4653211 223344556699999999999975 4456778888888888 999999999999999999999
Q ss_pred CCCcHHHHhHHHHhhCCcHHH-HHHHHHHhhc
Q 007519 535 NAPAHVVLCNIYAASGRHVEE-HKLRMDMGLK 565 (600)
Q Consensus 535 ~~~~~~~l~~~~~~~g~~~~A-~~~~~~~~~~ 565 (600)
++.++..++.++...|+.+++ .++++.+.+.
T Consensus 233 ~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 233 HPETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 999999999999999999875 5677666544
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.71 E-value=8.4e-16 Score=155.26 Aligned_cols=374 Identities=10% Similarity=-0.055 Sum_probs=225.9
Q ss_pred CcccHHHHHHHHHhcCCHhHHHHHHHhccc-----------C-CchhHHHHHHHHHhcCChhHHHHHHccCCC-------
Q 007519 134 NVISWNAMIAGYVECCMMGEAIVLFEEMEE-----------R-NVVTWTSMISGYCRAGEVEEGYCLFRRMPR------- 194 (600)
Q Consensus 134 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----------~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------- 194 (600)
....|+.+..++...|+.++|++.|++..+ | ...+|+.+..+|...|++++|...+++..+
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 456788999999999999999999987652 2 235688889999999999999888876542
Q ss_pred ----CCcchHHHHHHHHHhc--CChhHHHHHHHHHHhhhcCCCCCC-hhhHHHHHHH---HHhcCChhhHHHHhcccC--
Q 007519 195 ----KNVVSWTAMIGGFAWN--GFHKESLLLFIEMKGICDNGNNCN-VQSCNSMING---YIRFGRLEEAQNLFDTVP-- 262 (600)
Q Consensus 195 ----~~~~~~~~li~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~-~~~~~~l~~~---~~~~~~~~~a~~~~~~~~-- 262 (600)
....++..+..++... +++++|+..|++..+. .|+ ...+..+..+ +...++.++|++.+++..
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~-----~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l 204 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK-----KPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRL 204 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-----STTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHH
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhc
Confidence 1234566666666654 4689999999999876 454 3444444444 345677788888877665
Q ss_pred -CCCchhHHHHHHHHHh----cCChHHHHHHHhhCCC---CChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCh-h
Q 007519 263 -VRDEISWTSMIDGYLS----VGQVSNAYYLFHNMPD---RDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLN-A 333 (600)
Q Consensus 263 -~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~ 333 (600)
+.+..++..+...+.. .|++++|...+++... .+..++..+...|...|++++|+..+++..+. .|+. .
T Consensus 205 ~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~ 282 (472)
T 4g1t_A 205 NPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEY--IPNNAY 282 (472)
T ss_dssp CSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHH
T ss_pred CCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHh--CCChHH
Confidence 4555666666555544 4667888888876543 45667888888899999999999999988875 4443 3
Q ss_pred HHHHHHHHHhcccchhhhHHHHHHHhhhcCCCchhHHHHHHHHHHhcCChHHHHHHHhcCC---CCChhhHHHHHHHHHh
Q 007519 334 TFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMV---SRDLVSWNSMVMGFSH 410 (600)
Q Consensus 334 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~ 410 (600)
.+..+..++...+....... ...........+.++.|...+++.. +.+..++..+...+..
T Consensus 283 ~~~~lg~~y~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~ 346 (472)
T 4g1t_A 283 LHCQIGCCYRAKVFQVMNLR----------------ENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHAL 346 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHC----------------------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHH----------------HHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHH
Confidence 44444434322111110000 0000111112233567777777654 5567788899999999
Q ss_pred cCChHHHHHHHHHHHHcCCCCChh--HHHHHHH-HhcccCchHHHHHHHHHHHhhcCCCCCcchHHHHHHHHhhcCChHH
Q 007519 411 HGLANETLKVFESMLESGTHPNSV--TFLGILS-ACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKE 487 (600)
Q Consensus 411 ~~~~~~a~~~~~~m~~~~~~p~~~--~~~~l~~-~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 487 (600)
.|++++|+..|++..+....|... .+..+.. .....|+.++|+..|+++.+ +.|+....... ...
T Consensus 347 ~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~---i~~~~~~~~~~---------~~~ 414 (472)
T 4g1t_A 347 ADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK---INQKSREKEKM---------KDK 414 (472)
T ss_dssp TTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH---SCCCCHHHHHH---------HHH
T ss_pred hccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCcccHHHHHH---------HHH
Confidence 999999999999998754333221 1222222 23567999999999999885 45654322222 233
Q ss_pred HHHHHHhCC--CCCCHHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCCcHHHHh
Q 007519 488 AEEFVLRLP--FEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLC 543 (600)
Q Consensus 488 A~~~~~~~~--~~p~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 543 (600)
+.+++++.. .+.+..+|..+...+. ..|++++|+..|++++++.|.+|.+...+|
T Consensus 415 l~~~~~~~l~~~p~~~~~~~~LG~~~~-~~g~~~~A~~~y~kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 415 LQKIAKMRLSKNGADSEALHVLAFLQE-LNEKMQQADEDSERGLESGSLIPSASSWNG 471 (472)
T ss_dssp HHHHHHHHHHHCC-CTTHHHHHHHHHH-HHHHCC------------------------
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence 344444332 2345678888888888 999999999999999999998887766554
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.69 E-value=2.5e-15 Score=143.65 Aligned_cols=274 Identities=10% Similarity=-0.005 Sum_probs=135.1
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHhcCChhhHHHHhcccCCCCchhHHHHHHHHH
Q 007519 198 VSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYL 277 (600)
Q Consensus 198 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~ 277 (600)
..+..+...+...|++++|..+|+++.+. .+.+...+..+..++...|++++|...++.+...
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~------------- 84 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQA----APEREEAWRSLGLTQAENEKDGLAIIALNHARML------------- 84 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------------
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-------------
Confidence 34555666666666666666666666653 1223445555555555555555555555544311
Q ss_pred hcCChHHHHHHHhhCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChh-HHHHHHHHHhcccchhhhHHHHH
Q 007519 278 SVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNA-TFSVLFGAAGATANIDLGRQIHC 356 (600)
Q Consensus 278 ~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~ 356 (600)
...+..++..+...+...|++++|+..++++.+.. |+.. .+..+...+
T Consensus 85 ---------------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~-------------- 133 (327)
T 3cv0_A 85 ---------------DPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQ--PQYEQLGSVNLQAD-------------- 133 (327)
T ss_dssp ---------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--TTTTTC----------------------
T ss_pred ---------------CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CccHHHHHHHhHHH--------------
Confidence 01234455566666666677777777777666542 2222 111110000
Q ss_pred HHhhhcCCCchhHHHHH-HH-HHHhcCChHHHHHHHhcCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 007519 357 VLMKTESESDLILENCL-IS-MYAKCGVIDNAYNIFSNMV---SRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHP 431 (600)
Q Consensus 357 ~~~~~~~~~~~~~~~~l-~~-~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p 431 (600)
++......+ .. .+...|++++|...++++. +.+...+..+...+...|++++|...++++.+.. +.
T Consensus 134 --------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~ 204 (327)
T 3cv0_A 134 --------VDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PD 204 (327)
T ss_dssp --------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT
T ss_pred --------HHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CC
Confidence 000000011 11 1334444444444444433 2234455555555555555555555555555432 22
Q ss_pred ChhHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhCC-CCCC---------
Q 007519 432 NSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQP-GPEHYVSMINLLGRAGKIKEAEEFVLRLP-FEPD--------- 500 (600)
Q Consensus 432 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~--------- 500 (600)
+...+..+...+...|++++|...++++.+. .| +...+..++.+|...|++++|.+.++++. ..|+
T Consensus 205 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 281 (327)
T 3cv0_A 205 DAQLWNKLGATLANGNRPQEALDAYNRALDI---NPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEAS 281 (327)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----C
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccch
Confidence 3444555555555566666666666555543 23 34455556666666666666666655542 1222
Q ss_pred ----HHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhC
Q 007519 501 ----HRIWGALLGACGFCEGNAEIAEHAAKRLLELD 532 (600)
Q Consensus 501 ----~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~ 532 (600)
...+..+...+. ..|+.++|...++++++..
T Consensus 282 ~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~l~~~ 316 (327)
T 3cv0_A 282 REATRSMWDFFRMLLN-VMNRPDLVELTYAQNVEPF 316 (327)
T ss_dssp CTHHHHHHHHHHHHHH-HTTCHHHHHHHTTCCSHHH
T ss_pred hhcCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHhc
Confidence 344555555555 6666666666666555533
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.67 E-value=2.1e-15 Score=134.42 Aligned_cols=194 Identities=15% Similarity=0.078 Sum_probs=156.1
Q ss_pred CCchhHHHHHHHHHHhcCChHHHHHHHhcCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHH
Q 007519 364 ESDLILENCLISMYAKCGVIDNAYNIFSNMV---SRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGIL 440 (600)
Q Consensus 364 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~ 440 (600)
+++...+..+...+...|++++|...|++.. +.+...|..+..++...|++++|+..|++..+.. +.+...+..+.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg 80 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS 80 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 3456677788888999999999999998865 5577888999999999999999999999998853 34456777888
Q ss_pred HHhccc-----------CchHHHHHHHHHHHhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhCC-CCCCHHHHHHH
Q 007519 441 SACSHA-----------GLVSRGWELFNAMFDVYKIQP-GPEHYVSMINLLGRAGKIKEAEEFVLRLP-FEPDHRIWGAL 507 (600)
Q Consensus 441 ~~~~~~-----------g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l 507 (600)
.++... |++++|...++++.+. .| +...+..++.+|...|++++|++.+++.. ...+...+..+
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l 157 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERV---NPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHH
Confidence 888888 9999999999999875 67 57889999999999999999999998864 22677888888
Q ss_pred HHHHhhhhCCHHHHHHHHHHHHhhCCCCCCcHHHHhHHHHhhCCcHHHHHHHHHH
Q 007519 508 LGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDM 562 (600)
Q Consensus 508 ~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 562 (600)
...+. ..|++++|+..++++++++|+++.++..++.++...|++++|...++..
T Consensus 158 a~~~~-~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 158 AELYL-SMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHH-HHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC--------------
T ss_pred HHHHH-HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 88888 9999999999999999999999999999999999999999999977654
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.63 E-value=2.6e-14 Score=131.34 Aligned_cols=223 Identities=12% Similarity=-0.037 Sum_probs=152.2
Q ss_pred hhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhcccchhhhHHHHHHHhhhcCCCchhHHHHHHHHH
Q 007519 298 VAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMY 377 (600)
Q Consensus 298 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 377 (600)
..|..+...+...|++++|+..|++..+.. .+...+..+..++...|+++.|...+..+.+.....
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~------------ 71 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREM------------ 71 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT------------
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCccc------------
Confidence 355666666677777777777777766654 444444444444445555555544444433321110
Q ss_pred HhcCChHHHHHHHhcCCCCC----hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccCchHHHH
Q 007519 378 AKCGVIDNAYNIFSNMVSRD----LVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGW 453 (600)
Q Consensus 378 ~~~~~~~~A~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~ 453 (600)
.++ ...|..+...+...|++++|...|++.... .|+. ..+...|++++|.
T Consensus 72 -----------------~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~ 125 (258)
T 3uq3_A 72 -----------------RADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKEL 125 (258)
T ss_dssp -----------------TCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHH
T ss_pred -----------------ccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHH
Confidence 011 456667777777888888888888887764 4443 2345567788888
Q ss_pred HHHHHHHhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHhhhhCCHHHHHHHHHHHHh
Q 007519 454 ELFNAMFDVYKIQP-GPEHYVSMINLLGRAGKIKEAEEFVLRLP--FEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLE 530 (600)
Q Consensus 454 ~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~ 530 (600)
..++++... .| +...+..++..+...|++++|.+.+++.. .+.+...+..+...+. ..|++++|+..++++++
T Consensus 126 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~al~ 201 (258)
T 3uq3_A 126 KKAEAEAYV---NPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALA-KLMSFPEAIADCNKAIE 201 (258)
T ss_dssp HHHHHHHHC---CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHc---CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHH-HhCCHHHHHHHHHHHHH
Confidence 888887753 45 46677888888888888888888888764 3335667777777777 88888888888888888
Q ss_pred hCCCCCCcHHHHhHHHHhhCCcHHHHHHHHHHhh
Q 007519 531 LDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGL 564 (600)
Q Consensus 531 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 564 (600)
..|+++.++..++.++...|++++|...++...+
T Consensus 202 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 235 (258)
T 3uq3_A 202 KDPNFVRAYIRKATAQIAVKEYASALETLDAART 235 (258)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 8888888888888888888888888886666544
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.6e-14 Score=132.69 Aligned_cols=233 Identities=10% Similarity=-0.034 Sum_probs=156.3
Q ss_pred chhHHHHHHHHHhcCChHHHHHHHhhCCC--CChhhHHHHHHHHHhCCChhHHHHHHHHHHHCC--CCCC----hhHHHH
Q 007519 266 EISWTSMIDGYLSVGQVSNAYYLFHNMPD--RDAVAWTAMISGLVQNELFVEATYLFMEMRAHG--VPPL----NATFSV 337 (600)
Q Consensus 266 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g--~~p~----~~~~~~ 337 (600)
...+..+...+...|++++|+..|++..+ .+...|..+...+...|++++|+..+++..+.. ..|+ ...+..
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 45678889999999999999999987543 677889999999999999999999999987742 1112 234444
Q ss_pred HHHHHhcccchhhhHHHHHHHhhhcCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHH
Q 007519 338 LFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANET 417 (600)
Q Consensus 338 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 417 (600)
+..++...|+++.|...+..+.+.. |+ ...+...|++++|
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~~~---------------------------------~~-------~~~~~~~~~~~~a 124 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLTEH---------------------------------RT-------ADILTKLRNAEKE 124 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC---------------------------------CC-------HHHHHHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcC---------------------------------ch-------hHHHHHHhHHHHH
Confidence 4444455555555555554444332 22 1234445666677
Q ss_pred HHHHHHHHHcCCCCChhHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhCC
Q 007519 418 LKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQP-GPEHYVSMINLLGRAGKIKEAEEFVLRLP 496 (600)
Q Consensus 418 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 496 (600)
...++++.... +.+...+..+...+...|++++|...++++.+. .| +...+..++..|...|++++|.+.+++..
T Consensus 125 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al 200 (258)
T 3uq3_A 125 LKKAEAEAYVN-PEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKR---APEDARGYSNRAAALAKLMSFPEAIADCNKAI 200 (258)
T ss_dssp HHHHHHHHHCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcC-cchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc---CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 77777666531 223345556666677777777777777777654 33 46667777777777788888777777653
Q ss_pred -CCC-CHHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhC------CCCCCcHHHHh
Q 007519 497 -FEP-DHRIWGALLGACGFCEGNAEIAEHAAKRLLELD------PLNAPAHVVLC 543 (600)
Q Consensus 497 -~~p-~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~------p~~~~~~~~l~ 543 (600)
..| +...+..+...+. ..|++++|+..+++++++. |++..++..+.
T Consensus 201 ~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~ 254 (258)
T 3uq3_A 201 EKDPNFVRAYIRKATAQI-AVKEYASALETLDAARTKDAEVNNGSSAREIDQLYY 254 (258)
T ss_dssp HHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHH
Confidence 333 4566666777777 7888888888888888877 65555544444
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.60 E-value=5.3e-16 Score=159.39 Aligned_cols=147 Identities=11% Similarity=0.116 Sum_probs=120.9
Q ss_pred chhHHHHHHHHHhcCChHHHHHHHhhCC-------CCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHH
Q 007519 266 EISWTSMIDGYLSVGQVSNAYYLFHNMP-------DRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVL 338 (600)
Q Consensus 266 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~-------~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 338 (600)
..+|+++|++|++.|++++|..+|++|. .||+.+||+||.+|++.|+.++|.++|++|.+.|+.||..||+++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 3478899999999999999999986653 489999999999999999999999999999999999999999999
Q ss_pred HHHHhcccch-hhhHHHHHHHhhhcCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC-----CChhhHHHHHHHHHhcC
Q 007519 339 FGAAGATANI-DLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVS-----RDLVSWNSMVMGFSHHG 412 (600)
Q Consensus 339 ~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~l~~~~~~~~ 412 (600)
|.++++.|.. +.|.+++++|.+.|+.||..+|++++....+.+-++.+.++...+.+ +.+.+...|...|.+.+
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~s~d~ 286 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDG 286 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHHCCCS
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHHHHccCC
Confidence 9999999985 78999999999999999999999999887776555555444443332 12344455666666554
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.60 E-value=3.2e-14 Score=141.70 Aligned_cols=371 Identities=10% Similarity=0.005 Sum_probs=159.9
Q ss_pred HHHHcCCChhHHHHHhhhcCC-CChhhHHHHHHHHHhcCCh---HHHHHHhhcCCCCCceeHHHHHHHHHHCC-----Ch
Q 007519 50 SGFLQNGRLSEARRLFEEMPE-RNVVSWTAMICGLADAGRV---CEARKLFEEMPERNVVSWNSMVVGLIRNG-----EL 120 (600)
Q Consensus 50 ~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~ 120 (600)
..+.+.|++++|.++|++..+ .++..+..|...|...|+. ++|+..|++..+.++..+..|...+...+ ++
T Consensus 11 ~~~~~~g~~~~A~~~~~~aa~~g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~~~~~ 90 (452)
T 3e4b_A 11 NEALKRGDTVTAQQNYQQLAELGYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGATEAEH 90 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCCTGGGTCC----------------------------CHHHHHHHHHTC--CCHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCcCH
Confidence 333444444444444444433 2333334444444444444 45555555444444444444444333333 44
Q ss_pred hHHHHHhhcCCC-CCcccHHHHHHHHHhcCCHhH---HHHHHHhcc-cCCchhHHHHHHHHHhcCCh----hHHHHHHcc
Q 007519 121 NEARKVFNSMPI-KNVISWNAMIAGYVECCMMGE---AIVLFEEME-ERNVVTWTSMISGYCRAGEV----EEGYCLFRR 191 (600)
Q Consensus 121 ~~a~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~---A~~~~~~~~-~~~~~~~~~l~~~~~~~g~~----~~A~~~~~~ 191 (600)
++|++.|++... .++..+..|...|...+..+. +.+.+.... ..++.....+...|...+.+ +.+..+++.
T Consensus 91 ~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~ 170 (452)
T 3e4b_A 91 HEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQHLDDVERICKA 170 (452)
T ss_dssp HHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHH
Confidence 455555544433 233344445555444433322 222222222 23455566666666666633 344445555
Q ss_pred CCCCCcchHHHHHHHHHhcC---ChhHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHhc----CChhhHHHHhcccCCC
Q 007519 192 MPRKNVVSWTAMIGGFAWNG---FHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRF----GRLEEAQNLFDTVPVR 264 (600)
Q Consensus 192 ~~~~~~~~~~~li~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~ 264 (600)
....++.++..+...|...| +.++|+..|+...+. | +++...+..+...|... +++++|..+|+...+.
T Consensus 171 a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~---g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~g 246 (452)
T 3e4b_A 171 ALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSR---G-TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIAPG 246 (452)
T ss_dssp HTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT---T-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHGGG
T ss_pred HHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHC---C-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHcCC
Confidence 55555557777777777777 777777777777754 2 33444445555555433 4666666666655432
Q ss_pred CchhHHHHHHHHHhcCChHHHHHHHhhCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhc
Q 007519 265 DEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGA 344 (600)
Q Consensus 265 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 344 (600)
++..+..+...|.. ....+++++|+..|++..+.| +...+..+...|.
T Consensus 247 ~~~a~~~Lg~~~~~----------------------------~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~- 294 (452)
T 3e4b_A 247 YPASWVSLAQLLYD----------------------------FPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY- 294 (452)
T ss_dssp STHHHHHHHHHHHH----------------------------SGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-
T ss_pred CHHHHHHHHHHHHh----------------------------CCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-
Confidence 33344444333110 023455666666666655544 2223333333222
Q ss_pred cc-----chhhhHHHHHHHhhhcCCCchhHHHHHHHHHHh----cCChHHHHHHHhcCC-CCChhhHHHHHHHHHh----
Q 007519 345 TA-----NIDLGRQIHCVLMKTESESDLILENCLISMYAK----CGVIDNAYNIFSNMV-SRDLVSWNSMVMGFSH---- 410 (600)
Q Consensus 345 ~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~-~~~~~~~~~l~~~~~~---- 410 (600)
.| +.++|...+.... . .++.....|...|.. ..++++|...|++.. ..+......+...|..
T Consensus 295 ~G~g~~~d~~~A~~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~ 370 (452)
T 3e4b_A 295 EGKWVPADAKAAEAHFEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFAIAQLFSQGKGT 370 (452)
T ss_dssp HCSSSCCCHHHHHHHHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHHHHHHHHHSCTTB
T ss_pred cCCCCCCCHHHHHHHHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHHHHHHHHHhCCCC
Confidence 22 4444444444333 1 122333333333333 224555555555443 2233344444444432
Q ss_pred cCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccCchHHHHHHHHHHHh
Q 007519 411 HGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFD 461 (600)
Q Consensus 411 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 461 (600)
..+..+|..+|+...+.| .++.......+......++..+|.++.++..+
T Consensus 371 ~~d~~~A~~~~~~A~~~g-~~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~ 420 (452)
T 3e4b_A 371 KPDPLNAYVFSQLAKAQD-TPEANDLATQLEAPLTPAQRAEGQRLVQQELA 420 (452)
T ss_dssp CCCHHHHHHHHHHHHTTC-CHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 235556666666655554 22222222222333334455555555554443
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.60 E-value=4.5e-14 Score=130.97 Aligned_cols=242 Identities=14% Similarity=0.032 Sum_probs=132.6
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhcccchhhhHHHHHHHhhhcCCCc--hhHHHHHHHHHHhc
Q 007519 303 MISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESD--LILENCLISMYAKC 380 (600)
Q Consensus 303 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~ 380 (600)
....+...|++++|+..|++..+.. +.+...+..+..++...|+++.|...+..+.+....++ ...+..+...+...
T Consensus 9 ~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~ 87 (272)
T 3u4t_A 9 YADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKK 87 (272)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHc
Confidence 3344444455555555555444431 11222444444444455555555555554444221111 12245555566666
Q ss_pred CChHHHHHHHhcCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccCchHHHHHHHH
Q 007519 381 GVIDNAYNIFSNMV---SRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFN 457 (600)
Q Consensus 381 ~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 457 (600)
|++++|...|++.. +.+..+|..+...+...|++++|+..|++..+. .+.+...+..+...+...+++++|.+.++
T Consensus 88 ~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 166 (272)
T 3u4t_A 88 GQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP-TTTDPKVFYELGQAYYYNKEYVKADSSFV 166 (272)
T ss_dssp TCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS-SCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc-CCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666665554 334456666666666666666666666666543 12233344444413333447777777777
Q ss_pred HHHhhcCCCC-CcchHHHHHHHHhhcCC---hHHHHHHHHhCC----CCCC------HHHHHHHHHHHhhhhCCHHHHHH
Q 007519 458 AMFDVYKIQP-GPEHYVSMINLLGRAGK---IKEAEEFVLRLP----FEPD------HRIWGALLGACGFCEGNAEIAEH 523 (600)
Q Consensus 458 ~~~~~~~~~p-~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~----~~p~------~~~~~~l~~~~~~~~g~~~~a~~ 523 (600)
++.+. .| +...+..++.++...|+ +++|...+++.. ..|+ ...+..+...+. ..|++++|+.
T Consensus 167 ~a~~~---~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~ 242 (272)
T 3u4t_A 167 KVLEL---KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYT-INRDKVKADA 242 (272)
T ss_dssp HHHHH---STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHh---CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHH-HcCCHHHHHH
Confidence 66653 34 34556666666666666 555666555542 1232 135566666777 8999999999
Q ss_pred HHHHHHhhCCCCCCcHHHHhHHHHhhC
Q 007519 524 AAKRLLELDPLNAPAHVVLCNIYAASG 550 (600)
Q Consensus 524 ~~~~~~~~~p~~~~~~~~l~~~~~~~g 550 (600)
.++++++++|+++.+...+.......+
T Consensus 243 ~~~~al~~~p~~~~a~~~l~~~~~~~~ 269 (272)
T 3u4t_A 243 AWKNILALDPTNKKAIDGLKMKLEHHH 269 (272)
T ss_dssp HHHHHHHHCTTCHHHHHHHC-------
T ss_pred HHHHHHhcCccHHHHHHHhhhhhcccc
Confidence 999999999988888888877766554
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.59 E-value=1e-13 Score=128.77 Aligned_cols=241 Identities=9% Similarity=-0.098 Sum_probs=181.8
Q ss_pred hCCChhHHHHHHHHHHHCCCCC---ChhHHHHHHHHHhcccchhhhHHHHHHHhhhcCCCchhHHHHHHHHHHhcCChHH
Q 007519 309 QNELFVEATYLFMEMRAHGVPP---LNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDN 385 (600)
Q Consensus 309 ~~g~~~~a~~~~~~m~~~g~~p---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 385 (600)
..|++++|+..|+++.+..... +...+..+...+...|+++.|...++.+.+.... +...+..+...+...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHccCHHH
Confidence 3467777888888777653211 2345666667777788888888888877765433 56777888888999999999
Q ss_pred HHHHHhcCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccCchHHHHHHHHHHHhh
Q 007519 386 AYNIFSNMV---SRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDV 462 (600)
Q Consensus 386 A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 462 (600)
|...|+++. +.+...+..+...+...|++++|...|+++.+. .|+.......+..+...|++++|...+++....
T Consensus 96 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 96 AYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 999998876 456788999999999999999999999999885 566555555555667789999999999888765
Q ss_pred cCCCCCcchHHHHHHHHhhcCChHHHHHHHHhCC-CCCC-----HHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCC
Q 007519 463 YKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLP-FEPD-----HRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNA 536 (600)
Q Consensus 463 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-----~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 536 (600)
.|+......++..+...++.++|.+.+++.. ..|+ ...+..+...+. ..|++++|+..++++++.+|++.
T Consensus 174 ---~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~p~~~ 249 (275)
T 1xnf_A 174 ---SDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYL-SLGDLDSATALFKLAVANNVHNF 249 (275)
T ss_dssp ---SCCCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCCTTC
T ss_pred ---CCcchHHHHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHH-HcCCHHHHHHHHHHHHhCCchhH
Confidence 3433333457778888899999999998864 3332 456777777888 99999999999999999999664
Q ss_pred CcHHHHhHHHHhhCCcHHHHHHH
Q 007519 537 PAHVVLCNIYAASGRHVEEHKLR 559 (600)
Q Consensus 537 ~~~~~l~~~~~~~g~~~~A~~~~ 559 (600)
.. .+.++...|++++|.+-+
T Consensus 250 ~~---~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 250 VE---HRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HH---HHHHHHHHHHHHHC----
T ss_pred HH---HHHHHHHHHHHHhhHHHH
Confidence 43 466788899999998754
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.8e-13 Score=136.34 Aligned_cols=374 Identities=7% Similarity=-0.056 Sum_probs=175.4
Q ss_pred HHHHHHhcCChhHHHHHHccCCC-CCcchHHHHHHHHHhcCCh---hHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHh
Q 007519 172 MISGYCRAGEVEEGYCLFRRMPR-KNVVSWTAMIGGFAWNGFH---KESLLLFIEMKGICDNGNNCNVQSCNSMINGYIR 247 (600)
Q Consensus 172 l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 247 (600)
+...+.+.|++++|.+.|++..+ .+..++..+...+...|+. ++|+..|++..+ . +...+..+...+..
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~----~---~~~A~~~Lg~~~~~ 81 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELGYSEAQVGLADIQVGTRDPAQIKQAEATYRAAAD----T---SPRAQARLGRLLAA 81 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCCTGGGTCC-----------------------------------CHHHHHHHHHT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHh----C---CHHHHHHHHHHHHh
Confidence 45556666777777777766543 3445555566666666666 666666666653 1 34444455553444
Q ss_pred cC-----ChhhHHHHhcccC-CCCchhHHHHHHHHHhcCChHHH---HHHHhhCCC-CChhhHHHHHHHHHhCCChhHHH
Q 007519 248 FG-----RLEEAQNLFDTVP-VRDEISWTSMIDGYLSVGQVSNA---YYLFHNMPD-RDAVAWTAMISGLVQNELFVEAT 317 (600)
Q Consensus 248 ~~-----~~~~a~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A---~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~ 317 (600)
.+ ++++|..+|++.. ..++..+..|...|...+..+++ .+.+..... .+...+..+...|...+.++++.
T Consensus 82 ~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~~~ 161 (452)
T 3e4b_A 82 KPGATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQHL 161 (452)
T ss_dssp C--CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGGGH
T ss_pred CCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcccCH
Confidence 33 5566666666655 23344556666666554443332 222222221 34455555666666666554444
Q ss_pred HHHHHHHHCCCCCChhHHHHHHHHHhccc---chhhhHHHHHHHhhhcCCCchhHHHHHHHHHHhc----CChHHHHHHH
Q 007519 318 YLFMEMRAHGVPPLNATFSVLFGAAGATA---NIDLGRQIHCVLMKTESESDLILENCLISMYAKC----GVIDNAYNIF 390 (600)
Q Consensus 318 ~~~~~m~~~g~~p~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~A~~~~ 390 (600)
.....+.+.-...+...+..+...+...| +.++|...+....+.|... ...+..+...|... +++++|...|
T Consensus 162 ~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~-a~~~~~Lg~~y~~g~~~~~d~~~A~~~~ 240 (452)
T 3e4b_A 162 DDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVT-AQRVDSVARVLGDATLGTPDEKTAQALL 240 (452)
T ss_dssp HHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSC-HHHHHHHHHHHTCGGGSSCCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHH-HHHHHHHHHHHhCCCCCCCCHHHHHHHH
Confidence 44333322212222335555555555566 6666666666666655432 22223344444333 5666666666
Q ss_pred hcCCCCChhhHHHHHHH-H--HhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccC-----chHHHHHHHHHHHhh
Q 007519 391 SNMVSRDLVSWNSMVMG-F--SHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAG-----LVSRGWELFNAMFDV 462 (600)
Q Consensus 391 ~~~~~~~~~~~~~l~~~-~--~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g-----~~~~a~~~~~~~~~~ 462 (600)
++..+.+...+..+... + ...+++++|+..|++..+.| +...+..+...|. .| ++++|.++|++..
T Consensus 241 ~~aa~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-- 314 (452)
T 3e4b_A 241 EKIAPGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-- 314 (452)
T ss_dssp HHHGGGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT--
T ss_pred HHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh--
Confidence 66553345555555555 3 34566666666666666554 3344444444443 33 6666666666553
Q ss_pred cCCCCCcchHHHHHHHHhh----cCChHHHHHHHHhCCCCCCHHHHHHHHHHHhh---hhCCHHHHHHHHHHHHhhCCCC
Q 007519 463 YKIQPGPEHYVSMINLLGR----AGKIKEAEEFVLRLPFEPDHRIWGALLGACGF---CEGNAEIAEHAAKRLLELDPLN 535 (600)
Q Consensus 463 ~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~---~~g~~~~a~~~~~~~~~~~p~~ 535 (600)
.-++..+..|+..|.. ..++++|.++|++.-...+......+...|.. ..+|..+|...++++.+..+..
T Consensus 315 ---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~~ 391 (452)
T 3e4b_A 315 ---GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTPE 391 (452)
T ss_dssp ---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCHH
T ss_pred ---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCHH
Confidence 1244555556655554 23666666666665322233333444444331 1236666666666666654422
Q ss_pred CCcHHHHhHHHHhhCCcHHHHHHHHHH
Q 007519 536 APAHVVLCNIYAASGRHVEEHKLRMDM 562 (600)
Q Consensus 536 ~~~~~~l~~~~~~~g~~~~A~~~~~~~ 562 (600)
.......+......++.++|.++.+..
T Consensus 392 a~~~l~~l~~~~~~~~~~~a~~~~~~~ 418 (452)
T 3e4b_A 392 ANDLATQLEAPLTPAQRAEGQRLVQQE 418 (452)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 222222222222334555555544433
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.5e-15 Score=156.10 Aligned_cols=112 Identities=10% Similarity=0.084 Sum_probs=53.8
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhcCC-------CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHH
Q 007519 368 ILENCLISMYAKCGVIDNAYNIFSNMV-------SRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGIL 440 (600)
Q Consensus 368 ~~~~~l~~~~~~~~~~~~A~~~~~~~~-------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~ 440 (600)
.+|+++|++|++.|++++|..+|.+|. .||+.+||+||.+|++.|++++|.++|++|.+.|+.||..||+++|
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI 207 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAAL 207 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 344444444444444444444443321 3444555555555555555555555555555555555555555555
Q ss_pred HHhcccCch-HHHHHHHHHHHhhcCCCCCcchHHHHHHHHh
Q 007519 441 SACSHAGLV-SRGWELFNAMFDVYKIQPGPEHYVSMINLLG 480 (600)
Q Consensus 441 ~~~~~~g~~-~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 480 (600)
.++++.|+. ++|.++|++|.+. |+.||..+|++++....
T Consensus 208 ~glcK~G~~~e~A~~Ll~EM~~k-G~~PD~vtY~~ll~~~e 247 (1134)
T 3spa_A 208 QCMGRQDQDAGTIERCLEQMSQE-GLKLQALFTAVLLSEED 247 (1134)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHH-TCCSHHHHHHSCCCHHH
T ss_pred HHHHhCCCcHHHHHHHHHHHHHc-CCCCChhhcccccChhh
Confidence 555554442 3444555555444 45555555554444333
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.56 E-value=4.4e-13 Score=129.24 Aligned_cols=244 Identities=10% Similarity=0.055 Sum_probs=184.8
Q ss_pred hhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC-hhHHHHHHHHHhcccc-hhhhHHHHHHHhhhcCCCchhHHHHHHH
Q 007519 298 VAWTAMISGLVQNELFVEATYLFMEMRAHGVPPL-NATFSVLFGAAGATAN-IDLGRQIHCVLMKTESESDLILENCLIS 375 (600)
Q Consensus 298 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 375 (600)
.+|+.+...+...|++++|+..+++.++. .|+ ...|..+..++...|+ +++|...++.+.+.... +...|..+..
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l--~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g~ 174 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIEL--NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHh--CccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHHH
Confidence 45666666777777777777777777764 343 4455666666777775 77777777777765544 5667778888
Q ss_pred HHHhcCChHHHHHHHhcCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcc-cCchHH
Q 007519 376 MYAKCGVIDNAYNIFSNMV---SRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSH-AGLVSR 451 (600)
Q Consensus 376 ~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~-~g~~~~ 451 (600)
++...|++++|+..|+++. +.+...|..+..++...|++++|+..++++.+.. +-+...|..+..++.. .|..++
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~e 253 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDR 253 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSH
T ss_pred HHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcchH
Confidence 8888899999999988876 5677889999999999999999999999998863 3456778888888877 566577
Q ss_pred H-----HHHHHHHHhhcCCCC-CcchHHHHHHHHhhcC--ChHHHHHHHHhCCCCCC-HHHHHHHHHHHhhhhC------
Q 007519 452 G-----WELFNAMFDVYKIQP-GPEHYVSMINLLGRAG--KIKEAEEFVLRLPFEPD-HRIWGALLGACGFCEG------ 516 (600)
Q Consensus 452 a-----~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~p~-~~~~~~l~~~~~~~~g------ 516 (600)
| ++.+++++.. .| +...|..+..+|...| ++++|.+.+.++...|+ ...+..+...+. ..|
T Consensus 254 A~~~~el~~~~~Al~l---~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~-~~~~~~~~~ 329 (382)
T 2h6f_A 254 AVLEREVQYTLEMIKL---VPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYE-DMLENQCDN 329 (382)
T ss_dssp HHHHHHHHHHHHHHHH---STTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHH-HHHHTTCSS
T ss_pred HHHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHH-HHhcccccc
Confidence 7 5888888764 67 5778889999999888 68999999888765554 456677777776 653
Q ss_pred --C-HHHHHHHHHHH-HhhCCCCCCcHHHHhHHHHhh
Q 007519 517 --N-AEIAEHAAKRL-LELDPLNAPAHVVLCNIYAAS 549 (600)
Q Consensus 517 --~-~~~a~~~~~~~-~~~~p~~~~~~~~l~~~~~~~ 549 (600)
+ .++|+.+++++ ++++|.....|..++..+...
T Consensus 330 ~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 330 KEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp HHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 3 58999999999 899998888888887776544
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.54 E-value=3.9e-13 Score=123.04 Aligned_cols=195 Identities=8% Similarity=-0.050 Sum_probs=127.6
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhcCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhc
Q 007519 368 ILENCLISMYAKCGVIDNAYNIFSNMV---SRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACS 444 (600)
Q Consensus 368 ~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~ 444 (600)
..+..+...+...|++++|...|+++. +.+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+.
T Consensus 38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~ 116 (252)
T 2ho1_A 38 DAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFLY 116 (252)
T ss_dssp HHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHH
Confidence 444555666666666666666666654 3455666666777777777777777777766642 334556666666677
Q ss_pred ccCchHHHHHHHHHHHhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHhhhhCCHHHH
Q 007519 445 HAGLVSRGWELFNAMFDVYKIQP-GPEHYVSMINLLGRAGKIKEAEEFVLRLP-FEP-DHRIWGALLGACGFCEGNAEIA 521 (600)
Q Consensus 445 ~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~g~~~~a 521 (600)
..|++++|.++++++.+ .+..| +...+..++..|...|++++|.+.++++. ..| +...+..+...+. ..|++++|
T Consensus 117 ~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A 194 (252)
T 2ho1_A 117 EQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLY-KEREYVPA 194 (252)
T ss_dssp HTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHH-HTTCHHHH
T ss_pred HHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHH-HcCCHHHH
Confidence 77777777777777665 12344 35566667777777777777777776653 223 4555666666666 77777777
Q ss_pred HHHHHHHHhhCCCCCCcHHHHhHHHHhhCCcHHHHHHHHHHhhc
Q 007519 522 EHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLK 565 (600)
Q Consensus 522 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 565 (600)
+..++++++..|+++..+..++.++...|++++|.++++.+.+.
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 195 RQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 77777777777766677777777777777777777766665544
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.54 E-value=5.5e-13 Score=119.55 Aligned_cols=197 Identities=11% Similarity=0.025 Sum_probs=141.0
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHhcCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHH
Q 007519 366 DLILENCLISMYAKCGVIDNAYNIFSNMV---SRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSA 442 (600)
Q Consensus 366 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 442 (600)
+...+..+...+...|++++|...|+++. +.+...+..+...+...|++++|...++++.... +.+...+..+...
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 34455666667777777777777777654 3456677777777778888888888888777652 3455666777777
Q ss_pred hccc-CchHHHHHHHHHHHhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHhhhhCCH
Q 007519 443 CSHA-GLVSRGWELFNAMFDVYKIQP-GPEHYVSMINLLGRAGKIKEAEEFVLRLP-FEP-DHRIWGALLGACGFCEGNA 518 (600)
Q Consensus 443 ~~~~-g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~g~~ 518 (600)
+... |++++|...++++.+ .+..| +...+..++..+...|++++|.+.++++. ..| +...+..+...+. ..|++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~-~~~~~ 163 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKM-LAGQL 163 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH-HHTCH
T ss_pred HHHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHH-HcCCH
Confidence 7777 888888888887776 23334 25667777788888888888888877753 333 4566666666777 78888
Q ss_pred HHHHHHHHHHHhhCC-CCCCcHHHHhHHHHhhCCcHHHHHHHHHHhhc
Q 007519 519 EIAEHAAKRLLELDP-LNAPAHVVLCNIYAASGRHVEEHKLRMDMGLK 565 (600)
Q Consensus 519 ~~a~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 565 (600)
++|+..++++++..| +++..+..++..+...|+.++|..+++.+.+.
T Consensus 164 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 164 GDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 888888888888887 77777777777777888888888777776544
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.54 E-value=4.4e-13 Score=119.25 Aligned_cols=110 Identities=12% Similarity=0.095 Sum_probs=59.8
Q ss_pred CChHHHHHHHhcCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccCchHHHHHHHH
Q 007519 381 GVIDNAYNIFSNMV---SRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFN 457 (600)
Q Consensus 381 ~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 457 (600)
|++++|...|++.. +.+...|..+..++...|++++|+..|++..+.. .+...+..+..++...|++++|...|+
T Consensus 98 g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~ 175 (217)
T 2pl2_A 98 GYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYA 175 (217)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 66666666665554 3345566666666666666666666666666654 455556666666666666666666666
Q ss_pred HHHhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhC
Q 007519 458 AMFDVYKIQP-GPEHYVSMINLLGRAGKIKEAEEFVLRL 495 (600)
Q Consensus 458 ~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 495 (600)
++.+. .| +...+..++.++...|++++|.+.+++.
T Consensus 176 ~al~~---~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 176 KALEQ---APKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHH---STTCHHHHHHHHHHHTC--------------
T ss_pred HHHHh---CCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 66653 44 3555666666666666666666666553
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.53 E-value=2e-13 Score=124.16 Aligned_cols=175 Identities=11% Similarity=0.063 Sum_probs=106.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhcCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcc
Q 007519 369 LENCLISMYAKCGVIDNAYNIFSNMV---SRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSH 445 (600)
Q Consensus 369 ~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 445 (600)
.+..+...+...|++++|...++++. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+..
T Consensus 59 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~ 137 (243)
T 2q7f_A 59 PYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVK 137 (243)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 34444455555555555555555443 3345556666666667777777777777766642 3345556666666677
Q ss_pred cCchHHHHHHHHHHHhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhCC-C-CCCHHHHHHHHHHHhhhhCCHHHHH
Q 007519 446 AGLVSRGWELFNAMFDVYKIQP-GPEHYVSMINLLGRAGKIKEAEEFVLRLP-F-EPDHRIWGALLGACGFCEGNAEIAE 522 (600)
Q Consensus 446 ~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~p~~~~~~~l~~~~~~~~g~~~~a~ 522 (600)
.|++++|...++++.+. .| +...+..++..+...|++++|.+.++++. . +.+..++..+...+. ..|++++|+
T Consensus 138 ~~~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~-~~~~~~~A~ 213 (243)
T 2q7f_A 138 LEQPKLALPYLQRAVEL---NENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYA-YKENREKAL 213 (243)
T ss_dssp TSCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCTTHHH
T ss_pred hccHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH-HccCHHHHH
Confidence 77777777777776653 23 45566667777777777777777776653 2 234555666666666 777777777
Q ss_pred HHHHHHHhhCCCCCCcHHHHhHHHHh
Q 007519 523 HAAKRLLELDPLNAPAHVVLCNIYAA 548 (600)
Q Consensus 523 ~~~~~~~~~~p~~~~~~~~l~~~~~~ 548 (600)
..++++++..|+++.++..+......
T Consensus 214 ~~~~~~~~~~p~~~~~~~~~~~l~~~ 239 (243)
T 2q7f_A 214 EMLDKAIDIQPDHMLALHAKKLLGHH 239 (243)
T ss_dssp HHHHHHHHHCTTCHHHHHHHTC----
T ss_pred HHHHHHHccCcchHHHHHHHHHHHhh
Confidence 77777777777666666655554433
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.52 E-value=1.4e-12 Score=120.80 Aligned_cols=233 Identities=9% Similarity=-0.003 Sum_probs=174.4
Q ss_pred hHHHHHHHHHhcCChHHHHHHHhhCCC---CChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCh--hHHHHHHHHH
Q 007519 268 SWTSMIDGYLSVGQVSNAYYLFHNMPD---RDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLN--ATFSVLFGAA 342 (600)
Q Consensus 268 ~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~--~~~~~l~~~~ 342 (600)
.+......+...|++++|+..|++..+ .+...+..+...+...|++++|+..+++..+.+..|+. ..+..+...+
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~ 84 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKIL 84 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence 445556667777777777777776543 34557777888888888888888888888774322221 2367777788
Q ss_pred hcccchhhhHHHHHHHhhhcCCCchhHHHHHHHHHHhcCChHHHHHHHhcCC---CCChhhHHHHHHHHHhcCChHHHHH
Q 007519 343 GATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMV---SRDLVSWNSMVMGFSHHGLANETLK 419 (600)
Q Consensus 343 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~ 419 (600)
...|+++.|...++.+.+.... +..++..+...|...|++++|...|++.. +.+...|..+...+...+++++|+.
T Consensus 85 ~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 163 (272)
T 3u4t_A 85 MKKGQDSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADS 163 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHcccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888887776543 56778889999999999999999999887 4466777777734445569999999
Q ss_pred HHHHHHHcCCCCChhHHHHHHHHhcccCc---hHHHHHHHHHHHhhcCCCCCc------chHHHHHHHHhhcCChHHHHH
Q 007519 420 VFESMLESGTHPNSVTFLGILSACSHAGL---VSRGWELFNAMFDVYKIQPGP------EHYVSMINLLGRAGKIKEAEE 490 (600)
Q Consensus 420 ~~~~m~~~~~~p~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~p~~------~~~~~l~~~~~~~g~~~~A~~ 490 (600)
.|+++.+.. +.+...+..+..++...|+ +++|...++++.+...-.|+. .++..++..|...|++++|.+
T Consensus 164 ~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 242 (272)
T 3u4t_A 164 SFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADA 242 (272)
T ss_dssp HHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 999998852 3345667777777777787 888999999888764334542 578889999999999999999
Q ss_pred HHHhCC-CCCCHH
Q 007519 491 FVLRLP-FEPDHR 502 (600)
Q Consensus 491 ~~~~~~-~~p~~~ 502 (600)
.+++.. ..|+..
T Consensus 243 ~~~~al~~~p~~~ 255 (272)
T 3u4t_A 243 AWKNILALDPTNK 255 (272)
T ss_dssp HHHHHHHHCTTCH
T ss_pred HHHHHHhcCccHH
Confidence 998874 556543
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.51 E-value=2.5e-13 Score=123.49 Aligned_cols=196 Identities=13% Similarity=0.091 Sum_probs=153.4
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHhcCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHH
Q 007519 366 DLILENCLISMYAKCGVIDNAYNIFSNMV---SRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSA 442 (600)
Q Consensus 366 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 442 (600)
....+..+...+...|++++|...|+++. +.+...+..+...+...|++++|+..++++.+.. +.+...+..+...
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 100 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNV 100 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHH
Confidence 45566677778888899999988888775 4567888899999999999999999999998863 4466778888899
Q ss_pred hcccCchHHHHHHHHHHHhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhCC-C-CCCHHHHHHHHHHHhhhhCCHH
Q 007519 443 CSHAGLVSRGWELFNAMFDVYKIQP-GPEHYVSMINLLGRAGKIKEAEEFVLRLP-F-EPDHRIWGALLGACGFCEGNAE 519 (600)
Q Consensus 443 ~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~p~~~~~~~l~~~~~~~~g~~~ 519 (600)
+...|++++|.+.++++.+. .| +...+..++..+...|++++|.+.++++. . +.+...+..+...+. ..|+++
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~ 176 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRA---GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLA-NEGMLD 176 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCCH
T ss_pred HHHhccHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHH-HcCCHH
Confidence 99999999999999999875 34 57788999999999999999999998874 3 345677888888888 999999
Q ss_pred HHHHHHHHHHhhCCCCCCcHHHHhHHHHhhCCcHHHHHHHHHHhhcC
Q 007519 520 IAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKG 566 (600)
Q Consensus 520 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 566 (600)
+|+..++++++..|+++.++..++.++...|++++|.+.++...+..
T Consensus 177 ~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 177 EALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 99999999999999999999999999999999999999887776543
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.51 E-value=3.9e-12 Score=117.85 Aligned_cols=223 Identities=10% Similarity=-0.071 Sum_probs=114.5
Q ss_pred ChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhc----ccchhhhHHHHHHHhhhcCCCchhHHH
Q 007519 296 DAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGA----TANIDLGRQIHCVLMKTESESDLILEN 371 (600)
Q Consensus 296 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 371 (600)
+..++..+...+...|++++|+..|++..+. .+...+..+...+.. .+++++|...++...+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 4566777777888888888888888887773 233445555555555 666666666666555543 334444
Q ss_pred HHHHHHHh----cCChHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcc--
Q 007519 372 CLISMYAK----CGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSH-- 445 (600)
Q Consensus 372 ~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~-- 445 (600)
.+...|.. .+++++|...| ++..+.+ +...+..+...|..
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~-------------------------------~~a~~~~---~~~a~~~lg~~~~~~~ 124 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYY-------------------------------SKACDLK---YAEGCASLGGIYHDGK 124 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHH-------------------------------HHHHHTT---CHHHHHHHHHHHHHCS
T ss_pred HHHHHHhCCCCcccCHHHHHHHH-------------------------------HHHHHcC---CccHHHHHHHHHHcCC
Confidence 44444444 45555555544 4444432 33333444444444
Q ss_pred --cCchHHHHHHHHHHHhhcCCCCCcchHHHHHHHHhh----cCChHHHHHHHHhCCCCCCHHHHHHHHHHHhhh----h
Q 007519 446 --AGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGR----AGKIKEAEEFVLRLPFEPDHRIWGALLGACGFC----E 515 (600)
Q Consensus 446 --~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~----~ 515 (600)
.+++++|.+.++++.+. + +...+..++..|.. .+++++|.+.+++.....+...+..+...+. . .
T Consensus 125 ~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~-~g~~~~ 199 (273)
T 1ouv_A 125 VVTRDFKKAVEYFTKACDL-N---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYH-HGEGAT 199 (273)
T ss_dssp SSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HTCSSC
T ss_pred CcccCHHHHHHHHHHHHhc-C---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-cCCCCC
Confidence 44555555555544432 1 23344444444444 4555555555544321123334444444444 4 4
Q ss_pred CCHHHHHHHHHHHHhhCCCCCCcHHHHhHHHHh----hCCcHHHHHHHHHHhhc
Q 007519 516 GNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAA----SGRHVEEHKLRMDMGLK 565 (600)
Q Consensus 516 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~ 565 (600)
+++++|+..++++.+..| +..+..++.+|.. .|++++|.++++...+.
T Consensus 200 ~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~ 251 (273)
T 1ouv_A 200 KNFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKL 251 (273)
T ss_dssp CCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHc
Confidence 555555555555555433 3444555555555 55555555544444433
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.51 E-value=5.3e-12 Score=117.00 Aligned_cols=230 Identities=10% Similarity=-0.057 Sum_probs=158.4
Q ss_pred CCchhHHHHHHHHHhcCChHHHHHHHhhCCCC-ChhhHHHHHHHHHh----CCChhHHHHHHHHHHHCCCCCChhHHHHH
Q 007519 264 RDEISWTSMIDGYLSVGQVSNAYYLFHNMPDR-DAVAWTAMISGLVQ----NELFVEATYLFMEMRAHGVPPLNATFSVL 338 (600)
Q Consensus 264 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 338 (600)
.++.++..+...+...|++++|+..|++..++ +..++..+...|.. .+++++|+..|++..+.+ +...+..+
T Consensus 4 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 80 (273)
T 1ouv_A 4 QDPKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLL 80 (273)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHH
Confidence 46677888999999999999999999987664 56788889999999 999999999999999875 67778888
Q ss_pred HHHHhc----ccchhhhHHHHHHHhhhcCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHhcCCh
Q 007519 339 FGAAGA----TANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLA 414 (600)
Q Consensus 339 ~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 414 (600)
...+.. .++.++|...++...+.+ +...+..+...|... ....+++
T Consensus 81 g~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~---------------------------~~~~~~~ 130 (273)
T 1ouv_A 81 GNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDG---------------------------KVVTRDF 130 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHC---------------------------SSSCCCH
T ss_pred HHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcC---------------------------CCcccCH
Confidence 888888 999999999999877654 344444444444440 0004555
Q ss_pred HHHHHHHHHHHHcCCCCChhHHHHHHHHhcc----cCchHHHHHHHHHHHhhcCCCCCcchHHHHHHHHhh----cCChH
Q 007519 415 NETLKVFESMLESGTHPNSVTFLGILSACSH----AGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGR----AGKIK 486 (600)
Q Consensus 415 ~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~ 486 (600)
++|+..|++..+.+ +...+..+...+.. .+++++|...+++..+. .++..+..++.+|.. .++++
T Consensus 131 ~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~~~~~~ 203 (273)
T 1ouv_A 131 KKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL----KDSPGCFNAGNMYHHGEGATKNFK 203 (273)
T ss_dssp HHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTCSSCCCHH
T ss_pred HHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCccHH
Confidence 55555555555543 33344444444544 66666666666666653 134556666666666 77777
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHhhh----hCCHHHHHHHHHHHHhhCCC
Q 007519 487 EAEEFVLRLPFEPDHRIWGALLGACGFC----EGNAEIAEHAAKRLLELDPL 534 (600)
Q Consensus 487 ~A~~~~~~~~~~p~~~~~~~l~~~~~~~----~g~~~~a~~~~~~~~~~~p~ 534 (600)
+|.+.+++.....+...+..+...+. . .++.++|+..++++.+..|+
T Consensus 204 ~A~~~~~~a~~~~~~~a~~~l~~~~~-~g~~~~~~~~~A~~~~~~a~~~~~~ 254 (273)
T 1ouv_A 204 EALARYSKACELENGGGCFNLGAMQY-NGEGVTRNEKQAIENFKKGCKLGAK 254 (273)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH-TTSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHH-cCCCcccCHHHHHHHHHHHHHcCCH
Confidence 77777766532222455555666665 5 67778888888888777773
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.50 E-value=2.2e-12 Score=118.00 Aligned_cols=204 Identities=13% Similarity=0.029 Sum_probs=145.0
Q ss_pred hhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhcccchhhhHHHHHHHhhhcCCCchhHHHHHHHH
Q 007519 297 AVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISM 376 (600)
Q Consensus 297 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 376 (600)
...|..+...+...|++++|+..|+++.+.. +. +...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~-----------------------------------~~~~~~~la~~ 80 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PS-----------------------------------SADAHAALAVV 80 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TT-----------------------------------CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CC-----------------------------------hHHHHHHHHHH
Confidence 3456666666666777777777776666542 11 23344455556
Q ss_pred HHhcCChHHHHHHHhcCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHhcccCchHHH
Q 007519 377 YAKCGVIDNAYNIFSNMV---SRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPN-SVTFLGILSACSHAGLVSRG 452 (600)
Q Consensus 377 ~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a 452 (600)
+...|++++|...++++. +.+...+..+...+...|++++|.++++++...+..|+ ...+..+..++...|++++|
T Consensus 81 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 160 (252)
T 2ho1_A 81 FQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQA 160 (252)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHH
Confidence 666666666666666554 34566777777888888888888888888876333453 45666777788888999999
Q ss_pred HHHHHHHHhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHhhhhCCHHHHHHHHHHHH
Q 007519 453 WELFNAMFDVYKIQP-GPEHYVSMINLLGRAGKIKEAEEFVLRLP-FEP-DHRIWGALLGACGFCEGNAEIAEHAAKRLL 529 (600)
Q Consensus 453 ~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~ 529 (600)
.+.++++.+. .| +...+..++..|...|++++|.+.++++. ..| +...+..+...+. ..|+.++|...+++++
T Consensus 161 ~~~~~~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~A~~~~~~~~ 236 (252)
T 2ho1_A 161 KEYFEKSLRL---NRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAK-VFEDRDTAASYGLQLK 236 (252)
T ss_dssp HHHHHHHHHH---CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhc---CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHH-HccCHHHHHHHHHHHH
Confidence 9999888764 34 46778888999999999999999988863 333 4556666667777 8999999999999999
Q ss_pred hhCCCCCCcHH
Q 007519 530 ELDPLNAPAHV 540 (600)
Q Consensus 530 ~~~p~~~~~~~ 540 (600)
+..|+++....
T Consensus 237 ~~~p~~~~~~~ 247 (252)
T 2ho1_A 237 RLYPGSLEYQE 247 (252)
T ss_dssp HHCTTSHHHHH
T ss_pred HHCCCCHHHHH
Confidence 99996655443
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.49 E-value=9.6e-13 Score=126.86 Aligned_cols=223 Identities=9% Similarity=0.088 Sum_probs=188.8
Q ss_pred hHHHHHHHHHhcccchhhhHHHHHHHhhhcCCCchhHHHHHHHHHHhcCC-hHHHHHHHhcCC---CCChhhHHHHHHHH
Q 007519 333 ATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGV-IDNAYNIFSNMV---SRDLVSWNSMVMGF 408 (600)
Q Consensus 333 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~---~~~~~~~~~l~~~~ 408 (600)
..+..+..++...|+.+.|...++.+.+.... +...|+.+..++...|+ +++|+..|+++. +.+...|..+..++
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~-~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~ 176 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLV 176 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 34566667788899999999999999887644 57788889999999997 999999999987 56788999999999
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCC-CcchHHHHHHHHhh-cCChH
Q 007519 409 SHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQP-GPEHYVSMINLLGR-AGKIK 486 (600)
Q Consensus 409 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~-~g~~~ 486 (600)
...|++++|+..|+++.+.. +-+...|..+..++...|++++|+..++++++. .| +...|+.++.+|.+ .|..+
T Consensus 177 ~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l---~P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 177 EWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE---DVRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhcCcch
Confidence 99999999999999999863 446678888899999999999999999999975 67 58899999999999 66657
Q ss_pred HH-----HHHHHhCC-CCC-CHHHHHHHHHHHhhhhC--CHHHHHHHHHHHHhhCCCCCCcHHHHhHHHHhhC-------
Q 007519 487 EA-----EEFVLRLP-FEP-DHRIWGALLGACGFCEG--NAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASG------- 550 (600)
Q Consensus 487 ~A-----~~~~~~~~-~~p-~~~~~~~l~~~~~~~~g--~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g------- 550 (600)
+| ++.+++.. ..| +...|..+...+. ..| ++++|+..++++ +.+|+++.++..++.+|.+.|
T Consensus 253 eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~-~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~ 330 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLVPHNESAWNYLKGILQ-DRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNK 330 (382)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHT-TTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSH
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-ccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccch
Confidence 77 47777653 555 4667888888887 777 689999999998 899999999999999999875
Q ss_pred --CcHHHHHHHHHH
Q 007519 551 --RHVEEHKLRMDM 562 (600)
Q Consensus 551 --~~~~A~~~~~~~ 562 (600)
.+++|.++++.+
T Consensus 331 ~~~~~~A~~~~~~l 344 (382)
T 2h6f_A 331 EDILNKALELCEIL 344 (382)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 258899988877
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.48 E-value=3e-13 Score=133.75 Aligned_cols=260 Identities=13% Similarity=-0.007 Sum_probs=159.6
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHCCCCCCh-----hHHHHHHHHHhcccchhhhHHHHHHHhhhc-----CCCchhHHH
Q 007519 302 AMISGLVQNELFVEATYLFMEMRAHGVPPLN-----ATFSVLFGAAGATANIDLGRQIHCVLMKTE-----SESDLILEN 371 (600)
Q Consensus 302 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~ 371 (600)
.+...+...|++++|+..|+++.+.+ |+. ..+..+...+...|+++.|...++.+.+.. .......+.
T Consensus 53 ~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 130 (411)
T 4a1s_A 53 LEGERLCNAGDCRAGVAFFQAAIQAG--TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSG 130 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHhc--ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHH
Confidence 34444555566666666666555542 221 234444555555566666665555443321 111234555
Q ss_pred HHHHHHHhcCChHHHHHHHhcCCC---------CChhhHHHHHHHHHhcCC-----------------hHHHHHHHHHHH
Q 007519 372 CLISMYAKCGVIDNAYNIFSNMVS---------RDLVSWNSMVMGFSHHGL-----------------ANETLKVFESML 425 (600)
Q Consensus 372 ~l~~~~~~~~~~~~A~~~~~~~~~---------~~~~~~~~l~~~~~~~~~-----------------~~~a~~~~~~m~ 425 (600)
.+...|...|++++|...+++... ....++..+...+...|+ +++|++.+++..
T Consensus 131 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al 210 (411)
T 4a1s_A 131 NLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENL 210 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHH
Confidence 666667777777777777666541 123456666777777777 777777777654
Q ss_pred Hc----CCCCC-hhHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCCC----cchHHHHHHHHhhcCChHHHHHHHHhCC
Q 007519 426 ES----GTHPN-SVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPG----PEHYVSMINLLGRAGKIKEAEEFVLRLP 496 (600)
Q Consensus 426 ~~----~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 496 (600)
+. +..|. ...+..+...+...|++++|.+.++++.+...-.++ ...+..++.+|...|++++|.+.+++..
T Consensus 211 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 290 (411)
T 4a1s_A 211 KLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTL 290 (411)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 42 11111 235666667777888888888888877654211111 2367778888888888888888877653
Q ss_pred ----CCCC----HHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCC------CCcHHHHhHHHHhhCCcHHHHHHHHHH
Q 007519 497 ----FEPD----HRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLN------APAHVVLCNIYAASGRHVEEHKLRMDM 562 (600)
Q Consensus 497 ----~~p~----~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~ 562 (600)
...+ ..++..+...+. ..|++++|+..+++++++.+.. ..++..++.+|...|++++|.+.++..
T Consensus 291 ~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 369 (411)
T 4a1s_A 291 ALAVELGEREVEAQSCYSLGNTYT-LLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQH 369 (411)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 1111 345566666677 8888888888888888865432 347778888888888888888866655
Q ss_pred hh
Q 007519 563 GL 564 (600)
Q Consensus 563 ~~ 564 (600)
.+
T Consensus 370 l~ 371 (411)
T 4a1s_A 370 LQ 371 (411)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.48 E-value=4.7e-12 Score=113.41 Aligned_cols=206 Identities=15% Similarity=0.094 Sum_probs=147.5
Q ss_pred hhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhcccchhhhHHHHHHHhhhcCCCchhHHHHHHHH
Q 007519 297 AVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISM 376 (600)
Q Consensus 297 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 376 (600)
...+..+...+...|++++|+..|+++.+.. |+ +...+..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~----------------------------------~~~~~~~l~~~ 51 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSD--PK----------------------------------NELAWLVRAEI 51 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT----------------------------------CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC--cc----------------------------------chHHHHHHHHH
Confidence 4456666666777777777777777666542 21 23344455556
Q ss_pred HHhcCChHHHHHHHhcCC---CCChhhHHHHHHHHHhc-CChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHhcccCchHH
Q 007519 377 YAKCGVIDNAYNIFSNMV---SRDLVSWNSMVMGFSHH-GLANETLKVFESMLESGTHPN-SVTFLGILSACSHAGLVSR 451 (600)
Q Consensus 377 ~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~ 451 (600)
+...|++++|...++++. +.+..++..+...+... |++++|...++++.+.+..|+ ...+..+..++...|++++
T Consensus 52 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 131 (225)
T 2vq2_A 52 YQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGL 131 (225)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHH
Confidence 666666666666666554 34566777788888888 888899988888887333343 4567777788888999999
Q ss_pred HHHHHHHHHhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhCC-CC--CCHHHHHHHHHHHhhhhCCHHHHHHHHHH
Q 007519 452 GWELFNAMFDVYKIQP-GPEHYVSMINLLGRAGKIKEAEEFVLRLP-FE--PDHRIWGALLGACGFCEGNAEIAEHAAKR 527 (600)
Q Consensus 452 a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~--p~~~~~~~l~~~~~~~~g~~~~a~~~~~~ 527 (600)
|...++++.+. .| +...+..++..+...|++++|.+.++++. .. .+...+..+...+. ..|+.+.+..+++.
T Consensus 132 A~~~~~~~~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~~~ 207 (225)
T 2vq2_A 132 AEAYLKRSLAA---QPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAK-ALGNAQAAYEYEAQ 207 (225)
T ss_dssp HHHHHHHHHHH---STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHH-HTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHh---CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH-hcCcHHHHHHHHHH
Confidence 99999988864 45 47788889999999999999999998864 33 35556655555666 88999999999999
Q ss_pred HHhhCCCCCCcHHHH
Q 007519 528 LLELDPLNAPAHVVL 542 (600)
Q Consensus 528 ~~~~~p~~~~~~~~l 542 (600)
+.+..|+++.....+
T Consensus 208 ~~~~~p~~~~~~~~l 222 (225)
T 2vq2_A 208 LQANFPYSEELQTVL 222 (225)
T ss_dssp HHHHCTTCHHHHHHH
T ss_pred HHHhCCCCHHHHHHh
Confidence 999999776655443
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.47 E-value=2.8e-12 Score=110.94 Aligned_cols=163 Identities=13% Similarity=0.067 Sum_probs=119.7
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCC-CcchHHHH
Q 007519 397 DLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQP-GPEHYVSM 475 (600)
Q Consensus 397 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l 475 (600)
+..+|..+...+...|++++|++.|++..+.. +-+...+..+..++...|++++|...++.+... .| +...+..+
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~ 79 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL---DTTSAEAYYIL 79 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CchhHHHHHHH
Confidence 45667777777777888888888888777652 334456667777777888888888888777654 34 45666777
Q ss_pred HHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCCcHHHHhHHHHhhCCcH
Q 007519 476 INLLGRAGKIKEAEEFVLRLP-FEP-DHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHV 553 (600)
Q Consensus 476 ~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 553 (600)
+..+...++++.|.+.+++.. ..| +...+..+...+. ..|++++|+..++++++++|+++.++..++.+|.+.|+++
T Consensus 80 ~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~-~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~ 158 (184)
T 3vtx_A 80 GSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYD-SMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRD 158 (184)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHH-HhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHH
Confidence 777788888888888777754 333 4556666666777 8888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHhh
Q 007519 554 EEHKLRMDMGL 564 (600)
Q Consensus 554 ~A~~~~~~~~~ 564 (600)
+|.+.++...+
T Consensus 159 ~A~~~~~~al~ 169 (184)
T 3vtx_A 159 EAVKYFKKALE 169 (184)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 88886655443
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.47 E-value=4e-13 Score=134.69 Aligned_cols=190 Identities=10% Similarity=-0.025 Sum_probs=166.1
Q ss_pred CchhHHHHHHHHHHhcCCh-HHHHHHHhcCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHH
Q 007519 365 SDLILENCLISMYAKCGVI-DNAYNIFSNMV---SRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGIL 440 (600)
Q Consensus 365 ~~~~~~~~l~~~~~~~~~~-~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~ 440 (600)
.+...+..+...+...|++ ++|...|++.. +.+...|..+..+|...|++++|+..|++..+. .|+...+..+.
T Consensus 100 ~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~lg 177 (474)
T 4abn_A 100 VEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTH--CKNKVSLQNLS 177 (474)
T ss_dssp CCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CCCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCHHHHHHHH
Confidence 3566777788888888898 99998888875 456788999999999999999999999999874 67778888888
Q ss_pred HHhccc---------CchHHHHHHHHHHHhhcCCCC-CcchHHHHHHHHhhc--------CChHHHHHHHHhCC-CCC--
Q 007519 441 SACSHA---------GLVSRGWELFNAMFDVYKIQP-GPEHYVSMINLLGRA--------GKIKEAEEFVLRLP-FEP-- 499 (600)
Q Consensus 441 ~~~~~~---------g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~--------g~~~~A~~~~~~~~-~~p-- 499 (600)
.++... |++++|.+.++++.+. .| +...|..++.+|... |++++|.+.+++.. ..|
T Consensus 178 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~ 254 (474)
T 4abn_A 178 MVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM---DVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKA 254 (474)
T ss_dssp HHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGG
T ss_pred HHHHHhccCChhhhhhhHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCc
Confidence 999999 9999999999999875 56 578899999999998 99999999999875 455
Q ss_pred --CHHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCCcHHHHhHHHHhhCCcHHHHHHHH
Q 007519 500 --DHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRM 560 (600)
Q Consensus 500 --~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 560 (600)
+...|..+...+. ..|++++|+..++++++++|+++.++..++.++...|++++|.+.+.
T Consensus 255 ~~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~ 316 (474)
T 4abn_A 255 SSNPDLHLNRATLHK-YEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKG 316 (474)
T ss_dssp GGCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ccCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 6778888888888 99999999999999999999999999999999999999999986443
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.46 E-value=1.6e-12 Score=120.66 Aligned_cols=239 Identities=9% Similarity=-0.045 Sum_probs=144.1
Q ss_pred cCChhHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHhcCChhhHHHHhcccC---CCCchhHHHHHHHHHhcCChHHHH
Q 007519 210 NGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVP---VRDEISWTSMIDGYLSVGQVSNAY 286 (600)
Q Consensus 210 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~ 286 (600)
.|++++|+..++++.+......+.+..++..+...+...|++++|...|+.+. +.+..++..+...+...|++++|+
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~ 97 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAY 97 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHH
Confidence 45667777777776653000001134556666667777777777777776654 445566666777777777777777
Q ss_pred HHHhhCCC---CChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhcccchhhhHHHHHHHhhhcC
Q 007519 287 YLFHNMPD---RDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTES 363 (600)
Q Consensus 287 ~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 363 (600)
..|++... .+..++..+...|...|++++|+..|+++.+. .|+.......+..+...|+.+.|...+........
T Consensus 98 ~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~ 175 (275)
T 1xnf_A 98 EAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSD 175 (275)
T ss_dssp HHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC
Confidence 77766543 35667778888888888888888888888775 45555555555555666777777777766655432
Q ss_pred CCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCC-------hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHH
Q 007519 364 ESDLILENCLISMYAKCGVIDNAYNIFSNMVSRD-------LVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTF 436 (600)
Q Consensus 364 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~ 436 (600)
. +...+ .++..+...++.++|...+.+....+ ...|..+...+...|++++|...|++..+. .|+..
T Consensus 176 ~-~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~-- 249 (275)
T 1xnf_A 176 K-EQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN--NVHNF-- 249 (275)
T ss_dssp C-CSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CCTTC--
T ss_pred c-chHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CchhH--
Confidence 2 23333 35555666666777777776665322 345666666666677777777777666653 34221
Q ss_pred HHHHHHhcccCchHHHHHHH
Q 007519 437 LGILSACSHAGLVSRGWELF 456 (600)
Q Consensus 437 ~~l~~~~~~~g~~~~a~~~~ 456 (600)
.....++...|++++|.+.+
T Consensus 250 ~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 250 VEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHhhHHHH
Confidence 11233444555555555544
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.46 E-value=9.6e-13 Score=129.81 Aligned_cols=286 Identities=13% Similarity=0.060 Sum_probs=166.9
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHhhCCC--C-C----hhhHHHHHHHHHhCCChhHHHHHHHHHHHC----CCCCC-hhH
Q 007519 267 ISWTSMIDGYLSVGQVSNAYYLFHNMPD--R-D----AVAWTAMISGLVQNELFVEATYLFMEMRAH----GVPPL-NAT 334 (600)
Q Consensus 267 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p~-~~~ 334 (600)
..+......+...|++++|+..|++... | + ...+..+...+...|++++|+..+++.... +-.|. ...
T Consensus 10 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 89 (406)
T 3sf4_A 10 LELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 89 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 3455666777778888888887776543 2 2 245667777777788888888877775432 11121 234
Q ss_pred HHHHHHHHhcccchhhhHHHHHHHhhhcCC-C----chhHHHHHHHHHHhcCC--------------------hHHHHHH
Q 007519 335 FSVLFGAAGATANIDLGRQIHCVLMKTESE-S----DLILENCLISMYAKCGV--------------------IDNAYNI 389 (600)
Q Consensus 335 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~----~~~~~~~l~~~~~~~~~--------------------~~~A~~~ 389 (600)
+..+...+...|+++.|...+..+.+.... + ...++..+...|...|+ +++|...
T Consensus 90 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 169 (406)
T 3sf4_A 90 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDF 169 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHH
Confidence 555566677777777777777755543211 0 13355666666777777 6777666
Q ss_pred HhcCC-----CC----ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCC----hhHHHHHHHHhcccCchHHHHHH
Q 007519 390 FSNMV-----SR----DLVSWNSMVMGFSHHGLANETLKVFESMLESGT-HPN----SVTFLGILSACSHAGLVSRGWEL 455 (600)
Q Consensus 390 ~~~~~-----~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~p~----~~~~~~l~~~~~~~g~~~~a~~~ 455 (600)
+++.. .+ ...++..+...+...|++++|...+++..+... .++ ..++..+...+...|++++|...
T Consensus 170 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 249 (406)
T 3sf4_A 170 YEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEY 249 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 66543 11 123556666667777777777777776654310 111 12455566666777777777777
Q ss_pred HHHHHhhcCCCCC----cchHHHHHHHHhhcCChHHHHHHHHhCC----CCCC----HHHHHHHHHHHhhhhCCHHHHHH
Q 007519 456 FNAMFDVYKIQPG----PEHYVSMINLLGRAGKIKEAEEFVLRLP----FEPD----HRIWGALLGACGFCEGNAEIAEH 523 (600)
Q Consensus 456 ~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~----~~~~~~l~~~~~~~~g~~~~a~~ 523 (600)
++++.+...-.++ ..++..++..|...|++++|.+.+++.. ..++ ..++..+...+. ..|++++|+.
T Consensus 250 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~ 328 (406)
T 3sf4_A 250 YKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYT-ALGNHDQAMH 328 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HHTCHHHHHH
T ss_pred HHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHH-HcCCHHHHHH
Confidence 7766543111111 4456666777777777777777766642 1111 334455555555 6777777777
Q ss_pred HHHHHHhhCCCCC------CcHHHHhHHHHhhCCcH
Q 007519 524 AAKRLLELDPLNA------PAHVVLCNIYAASGRHV 553 (600)
Q Consensus 524 ~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~ 553 (600)
.+++++++.+... .++..++.++...|+..
T Consensus 329 ~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 329 FAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSY 364 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhH
Confidence 7777777766442 23344444444444444
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.46 E-value=3.3e-13 Score=133.17 Aligned_cols=269 Identities=10% Similarity=-0.014 Sum_probs=189.3
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHHHhhhcCCCCCC-----hhhHHHHHHHHHhcCChhhHHHHhcccCCCCchhHHHH
Q 007519 198 VSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCN-----VQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSM 272 (600)
Q Consensus 198 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l 272 (600)
..+......+...|++++|...|+++.+. .|+ ...+..+...+...|++++|...+++..
T Consensus 10 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~-----~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al---------- 74 (406)
T 3sf4_A 10 LELALEGERLCKSGDCRAGVSFFEAAVQV-----GTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDL---------- 74 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH----------
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhc-----CcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH----------
Confidence 34556667777888888888888888765 232 2456666667777777777776665442
Q ss_pred HHHHHhcCChHHHHHHHhhCCC--CChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCC-CCC----hhHHHHHHHHHhcc
Q 007519 273 IDGYLSVGQVSNAYYLFHNMPD--RDAVAWTAMISGLVQNELFVEATYLFMEMRAHGV-PPL----NATFSVLFGAAGAT 345 (600)
Q Consensus 273 ~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~----~~~~~~l~~~~~~~ 345 (600)
.+...... ....++..+...+...|++++|+..+++..+... .++ ..++..+...+...
T Consensus 75 --------------~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~ 140 (406)
T 3sf4_A 75 --------------TLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAK 140 (406)
T ss_dssp --------------HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred --------------HHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHc
Confidence 11111111 1133566677777888888888888877654310 011 33667777788889
Q ss_pred cc--------------------hhhhHHHHHHHhhh----cCC-CchhHHHHHHHHHHhcCChHHHHHHHhcCC-----C
Q 007519 346 AN--------------------IDLGRQIHCVLMKT----ESE-SDLILENCLISMYAKCGVIDNAYNIFSNMV-----S 395 (600)
Q Consensus 346 ~~--------------------~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-----~ 395 (600)
|+ ++.|...+....+. +.. ....++..+...|...|++++|...+++.. .
T Consensus 141 g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 220 (406)
T 3sf4_A 141 GKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF 220 (406)
T ss_dssp HHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHT
T ss_pred CCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhc
Confidence 99 99999998866543 111 124467788899999999999999998876 1
Q ss_pred CC----hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CC----hhHHHHHHHHhcccCchHHHHHHHHHHHhhcCCC
Q 007519 396 RD----LVSWNSMVMGFSHHGLANETLKVFESMLESGTH-PN----SVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQ 466 (600)
Q Consensus 396 ~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 466 (600)
++ ..++..+...+...|++++|...+++....... ++ ..++..+...+...|++++|.+.++++.+...-.
T Consensus 221 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 300 (406)
T 3sf4_A 221 GDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL 300 (406)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhc
Confidence 22 237888899999999999999999998754111 11 3567778888999999999999999987642212
Q ss_pred CC----cchHHHHHHHHhhcCChHHHHHHHHhC
Q 007519 467 PG----PEHYVSMINLLGRAGKIKEAEEFVLRL 495 (600)
Q Consensus 467 p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~ 495 (600)
++ ..++..++.+|...|++++|.+.+++.
T Consensus 301 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 333 (406)
T 3sf4_A 301 NDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH 333 (406)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 22 567888999999999999999998875
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.45 E-value=1.1e-12 Score=125.63 Aligned_cols=259 Identities=14% Similarity=0.030 Sum_probs=174.4
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHCCCCCC-----hhHHHHHHHHHhcccchhhhHHHHHHHhhh----cCC-CchhHHHH
Q 007519 303 MISGLVQNELFVEATYLFMEMRAHGVPPL-----NATFSVLFGAAGATANIDLGRQIHCVLMKT----ESE-SDLILENC 372 (600)
Q Consensus 303 li~~~~~~g~~~~a~~~~~~m~~~g~~p~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~ 372 (600)
....+...|++++|+..|+++.+.. |+ ...+..+...+...|+++.|...+..+.+. +.. ....++..
T Consensus 11 ~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 88 (338)
T 3ro2_A 11 EGERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGN 88 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHH
Confidence 3445566666666666666666542 22 134445555666666666666666644332 111 12445666
Q ss_pred HHHHHHhcCChHHHHHHHhcCC-----CCC----hhhHHHHHHHHHhcCC--------------------hHHHHHHHHH
Q 007519 373 LISMYAKCGVIDNAYNIFSNMV-----SRD----LVSWNSMVMGFSHHGL--------------------ANETLKVFES 423 (600)
Q Consensus 373 l~~~~~~~~~~~~A~~~~~~~~-----~~~----~~~~~~l~~~~~~~~~--------------------~~~a~~~~~~ 423 (600)
+...+...|++++|...+++.. .++ ..++..+...+...|+ +++|...+++
T Consensus 89 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 168 (338)
T 3ro2_A 89 LGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEE 168 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHH
Confidence 7777778888888887777654 122 2366777778888888 8888888877
Q ss_pred HHHc----CCCCC-hhHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCCC----cchHHHHHHHHhhcCChHHHHHHHHh
Q 007519 424 MLES----GTHPN-SVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPG----PEHYVSMINLLGRAGKIKEAEEFVLR 494 (600)
Q Consensus 424 m~~~----~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~ 494 (600)
.... +..|. ...+..+...+...|++++|.+.++++.+...-.++ ..++..++..+...|++++|.+.+++
T Consensus 169 a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 248 (338)
T 3ro2_A 169 NLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKK 248 (338)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 6542 11111 235666777888899999999999888754211111 33788889999999999999998877
Q ss_pred CC----CCCC----HHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCC------CCcHHHHhHHHHhhCCcHHHHHHHH
Q 007519 495 LP----FEPD----HRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLN------APAHVVLCNIYAASGRHVEEHKLRM 560 (600)
Q Consensus 495 ~~----~~p~----~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~ 560 (600)
.. ..++ ..++..+...+. ..|++++|+..++++++..|.. ..++..++.+|...|++++|...++
T Consensus 249 al~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 327 (338)
T 3ro2_A 249 TLLLARQLKDRAVEAQSCYSLGNTYT-LLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAE 327 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHhhcchhHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 53 1122 345666677777 8999999999999998865533 3478889999999999999999777
Q ss_pred HHhh
Q 007519 561 DMGL 564 (600)
Q Consensus 561 ~~~~ 564 (600)
...+
T Consensus 328 ~a~~ 331 (338)
T 3ro2_A 328 KHLE 331 (338)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6654
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.42 E-value=4.1e-12 Score=109.86 Aligned_cols=165 Identities=12% Similarity=0.097 Sum_probs=141.0
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHhcCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHH
Q 007519 366 DLILENCLISMYAKCGVIDNAYNIFSNMV---SRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSA 442 (600)
Q Consensus 366 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 442 (600)
+..+|..+...|...|++++|...|++.. +.+..+|..+..++...|++++|+..+....... +.+...+..+...
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSA 82 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHH
Confidence 45678888999999999999999999876 5677889999999999999999999999998753 4445666677788
Q ss_pred hcccCchHHHHHHHHHHHhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHhhhhCCHH
Q 007519 443 CSHAGLVSRGWELFNAMFDVYKIQP-GPEHYVSMINLLGRAGKIKEAEEFVLRLP-FEP-DHRIWGALLGACGFCEGNAE 519 (600)
Q Consensus 443 ~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~g~~~ 519 (600)
+...++++.+...+.++... .| +...+..++.+|.+.|++++|++.+++.. ..| +..++..+..++. ..|+++
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~---~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~-~~g~~~ 158 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIAL---NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYE-GKGLRD 158 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHH
T ss_pred HHHcCCHHHHHHHHHHHHHh---CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHH-HCCCHH
Confidence 88999999999999998864 45 57788999999999999999999998874 444 5677888888888 999999
Q ss_pred HHHHHHHHHHhhCCCC
Q 007519 520 IAEHAAKRLLELDPLN 535 (600)
Q Consensus 520 ~a~~~~~~~~~~~p~~ 535 (600)
+|+..++++++++|++
T Consensus 159 ~A~~~~~~al~~~p~~ 174 (184)
T 3vtx_A 159 EAVKYFKKALEKEEKK 174 (184)
T ss_dssp HHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHHhCCccC
Confidence 9999999999999954
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.41 E-value=3.1e-10 Score=116.80 Aligned_cols=407 Identities=9% Similarity=0.046 Sum_probs=252.3
Q ss_pred CCceeHHHHHHHHHHCCChhHHHHHhhcCCC--C-CcccHHHHHHHHHhcCC---HhHHHHHHHhccc-----CCchhHH
Q 007519 102 RNVVSWNSMVVGLIRNGELNEARKVFNSMPI--K-NVISWNAMIAGYVECCM---MGEAIVLFEEMEE-----RNVVTWT 170 (600)
Q Consensus 102 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~-----~~~~~~~ 170 (600)
.|...|..++..+.+.++++.+..+|+++.. | ....|...+..-.+.|+ ++.+..+|++... |++..|.
T Consensus 64 ~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW~ 143 (679)
T 4e6h_A 64 TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLWL 143 (679)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHHH
T ss_pred CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHHH
Confidence 4666788888888888888888888888766 3 34455566666667777 8888888887763 5666666
Q ss_pred HHHHHHHhcCCh--------hHHHHHHccCC------CC-CcchHHHHHHHHHh---------cCChhHHHHHHHHHHhh
Q 007519 171 SMISGYCRAGEV--------EEGYCLFRRMP------RK-NVVSWTAMIGGFAW---------NGFHKESLLLFIEMKGI 226 (600)
Q Consensus 171 ~l~~~~~~~g~~--------~~A~~~~~~~~------~~-~~~~~~~li~~~~~---------~~~~~~a~~~~~~~~~~ 226 (600)
..+....+.++. +...++|+... .+ +...|...+..... +++++.+..+|+.++..
T Consensus 144 ~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~i 223 (679)
T 4e6h_A 144 SYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQ 223 (679)
T ss_dssp HHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHhC
Confidence 666655554443 22335555422 22 23456666665432 33456677777776632
Q ss_pred hcCCCCCC--hhhHHHHHHHHHhcCChhhHHHHhcccCCCCchhHHHHHHHHHhcCChHHHHHHHhh-------CCC---
Q 007519 227 CDNGNNCN--VQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHN-------MPD--- 294 (600)
Q Consensus 227 ~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~-------~~~--- 294 (600)
+.. ..+|......-...+. ..+..++.+. ..+++.|...+.+ +..
T Consensus 224 -----P~~~~~~~w~~Y~~fe~~~~~-~~a~~~~~e~-----------------~~~y~~Ar~~~~e~~~~~~~l~r~~p 280 (679)
T 4e6h_A 224 -----PMDCLESMWQRYTQWEQDVNQ-LTARRHIGEL-----------------SAQYMNARSLYQDWLNITKGLKRNLP 280 (679)
T ss_dssp -----CCSSHHHHHHHHHHHHHHHCT-TTHHHHHHHH-----------------HHHHHHHHHHHHHHHHHTTTCCCCCC
T ss_pred -----ccHHHHHHHHHHHHHHHhcCc-chHHHHHHHh-----------------hHHHHHHHHHHHHHHHHHHhHhhccc
Confidence 211 1222222111111111 1111111110 0111222222211 110
Q ss_pred -----------C--C------hhhHHHHHHHHHhCC-------ChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhcccch
Q 007519 295 -----------R--D------AVAWTAMISGLVQNE-------LFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANI 348 (600)
Q Consensus 295 -----------~--~------~~~~~~li~~~~~~g-------~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~ 348 (600)
| + ...|...+.---..+ ..+++..+|++.+.. ++-....|......+...|+.
T Consensus 281 ~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~ 359 (679)
T 4e6h_A 281 ITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTD 359 (679)
T ss_dssp SSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCC
T ss_pred cccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcH
Confidence 0 0 124555554333322 124566788888775 344666777777777788888
Q ss_pred hhhH-HHHHHHhhhcCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC-------------CC------------hhhHH
Q 007519 349 DLGR-QIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVS-------------RD------------LVSWN 402 (600)
Q Consensus 349 ~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-------------~~------------~~~~~ 402 (600)
+.|. .+++..... .+.+..++..++....+.|++++|..+|+++.. |+ ...|.
T Consensus 360 ~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi 438 (679)
T 4e6h_A 360 STVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYC 438 (679)
T ss_dssp TTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHH
Confidence 8896 999988764 344666777888888899999999999988762 31 23688
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcc-cCchHHHHHHHHHHHhhcCCCCCcchHHHHHHHHhh
Q 007519 403 SMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSH-AGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGR 481 (600)
Q Consensus 403 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 481 (600)
..+....+.|+.+.|..+|.+..+.-..+....|...+..-.+ .++.+.|..+|+...+.++ -+...+...+.....
T Consensus 439 ~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p--~~~~~w~~y~~fe~~ 516 (679)
T 4e6h_A 439 VYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFA--TDGEYINKYLDFLIY 516 (679)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCC--CchHHHHHHHHHHHh
Confidence 8888888889999999999999875112223344333322223 3569999999999998622 256667788888889
Q ss_pred cCChHHHHHHHHhCC-CCC----CHHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCC
Q 007519 482 AGKIKEAEEFVLRLP-FEP----DHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNA 536 (600)
Q Consensus 482 ~g~~~~A~~~~~~~~-~~p----~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 536 (600)
.|+.+.|..+|++.. ..| ....|...+..-. ..|+.+.+..+.+++.+..|+++
T Consensus 517 ~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~-~~G~~~~~~~v~~R~~~~~P~~~ 575 (679)
T 4e6h_A 517 VNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFES-KVGSLNSVRTLEKRFFEKFPEVN 575 (679)
T ss_dssp HTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHH-HTCCSHHHHHHHHHHHHHSTTCC
T ss_pred CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCc
Confidence 999999999999965 333 2345666666666 88999999999999999999654
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.39 E-value=8.1e-11 Score=110.97 Aligned_cols=219 Identities=10% Similarity=0.056 Sum_probs=158.0
Q ss_pred hHHHHHHHHHHHCCCCCChhHHHHHHHHHh-------cccch-------hhhHHHHHHHhhhcCCCchhHHHHHHHHHHh
Q 007519 314 VEATYLFMEMRAHGVPPLNATFSVLFGAAG-------ATANI-------DLGRQIHCVLMKTESESDLILENCLISMYAK 379 (600)
Q Consensus 314 ~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~-------~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 379 (600)
++|+..|++..... +.+...|..+...+. ..|++ +.|..+++...+.-.+.+...+..++..+..
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 56777777777642 334445555555443 24664 7788888777763222355677888888888
Q ss_pred cCChHHHHHHHhcCC--CC-Chh-hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHh-cccCchHHHHH
Q 007519 380 CGVIDNAYNIFSNMV--SR-DLV-SWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSAC-SHAGLVSRGWE 454 (600)
Q Consensus 380 ~~~~~~A~~~~~~~~--~~-~~~-~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~-~~~g~~~~a~~ 454 (600)
.|++++|..+|+++. .| +.. .|..++..+.+.|++++|..+|++..+.. +++...|....... ...|+.++|..
T Consensus 112 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~ 190 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFK 190 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHH
Confidence 889999998888876 33 343 78888888888999999999999988753 33444444333222 23689999999
Q ss_pred HHHHHHhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhCC----CCC--CHHHHHHHHHHHhhhhCCHHHHHHHHHH
Q 007519 455 LFNAMFDVYKIQP-GPEHYVSMINLLGRAGKIKEAEEFVLRLP----FEP--DHRIWGALLGACGFCEGNAEIAEHAAKR 527 (600)
Q Consensus 455 ~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p--~~~~~~~l~~~~~~~~g~~~~a~~~~~~ 527 (600)
+|+++.+. .| ++..|..++..+.+.|++++|..+|++.. .+| ....|..++.... ..|+.+.|..++++
T Consensus 191 ~~~~al~~---~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~-~~g~~~~a~~~~~~ 266 (308)
T 2ond_A 191 IFELGLKK---YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFES-NIGDLASILKVEKR 266 (308)
T ss_dssp HHHHHHHH---HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHH-HHSCHHHHHHHHHH
T ss_pred HHHHHHHh---CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH-HcCCHHHHHHHHHH
Confidence 99998875 45 57788888999999999999999998864 244 3456777777777 88999999999999
Q ss_pred HHhhCCCCCCc
Q 007519 528 LLELDPLNAPA 538 (600)
Q Consensus 528 ~~~~~p~~~~~ 538 (600)
+++..|+++..
T Consensus 267 a~~~~p~~~~~ 277 (308)
T 2ond_A 267 RFTAFREEYEG 277 (308)
T ss_dssp HHHHTTTTTSS
T ss_pred HHHHccccccc
Confidence 99999976543
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.38 E-value=3.1e-12 Score=126.41 Aligned_cols=266 Identities=13% Similarity=0.044 Sum_probs=166.1
Q ss_pred hhHHHHHHHHHhcCChhhHHHHhcccC---CCCc----hhHHHHHHHHHhcCChHHHHHHHhhCCC---------CChhh
Q 007519 236 QSCNSMINGYIRFGRLEEAQNLFDTVP---VRDE----ISWTSMIDGYLSVGQVSNAYYLFHNMPD---------RDAVA 299 (600)
Q Consensus 236 ~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~---------~~~~~ 299 (600)
..+..+...+...|++++|...|+++. +.++ .++..+...|...|++++|+..|++... ....+
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 128 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS 128 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence 344455566677777777777777665 2222 2455566666666666666666655432 11234
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhcccchhhhHHHHHHHhhhc-CCCchhHHHHHHHHHH
Q 007519 300 WTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTE-SESDLILENCLISMYA 378 (600)
Q Consensus 300 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~ 378 (600)
+..+...|...|++++|+..+++..+... +.+ ......++..+...|.
T Consensus 129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~-------------------------------~~~~~~~~~~~~~~l~~~~~ 177 (411)
T 4a1s_A 129 SGNLGNTLKVMGRFDEAAICCERHLTLAR-------------------------------QLGDRLSEGRALYNLGNVYH 177 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHH-------------------------------HHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHH-------------------------------HhhchHHHHHHHHHHHHHHH
Confidence 55555556666666666666655443200 000 0011234444555555
Q ss_pred hcCC-----------------hHHHHHHHhcCCC---------CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-C
Q 007519 379 KCGV-----------------IDNAYNIFSNMVS---------RDLVSWNSMVMGFSHHGLANETLKVFESMLESGTH-P 431 (600)
Q Consensus 379 ~~~~-----------------~~~A~~~~~~~~~---------~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-p 431 (600)
..|+ +++|...+++... .....+..+...+...|++++|+..+++..+.... +
T Consensus 178 ~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 257 (411)
T 4a1s_A 178 AKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFG 257 (411)
T ss_dssp HHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred HcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcC
Confidence 5555 5555555554421 12346677778888888888888888887653111 1
Q ss_pred C----hhHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCC----CcchHHHHHHHHhhcCChHHHHHHHHhCC-C---CC
Q 007519 432 N----SVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQP----GPEHYVSMINLLGRAGKIKEAEEFVLRLP-F---EP 499 (600)
Q Consensus 432 ~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~---~p 499 (600)
+ ...+..+...+...|++++|...++++.....-.. ...++..++.+|...|++++|.+.+++.. . .+
T Consensus 258 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 337 (411)
T 4a1s_A 258 DRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELG 337 (411)
T ss_dssp CHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC
Confidence 1 12667777888889999999999888775421111 15677888999999999999999988763 1 11
Q ss_pred C----HHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCC
Q 007519 500 D----HRIWGALLGACGFCEGNAEIAEHAAKRLLELDP 533 (600)
Q Consensus 500 ~----~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p 533 (600)
+ ..++..+...+. ..|++++|...+++++++.+
T Consensus 338 ~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~ 374 (411)
T 4a1s_A 338 DRIGEARACWSLGNAHS-AIGGHERALKYAEQHLQLAX 374 (411)
T ss_dssp CHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCC
T ss_pred ChHHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHHHh
Confidence 1 335666777777 99999999999999998877
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.37 E-value=2.5e-11 Score=118.63 Aligned_cols=226 Identities=8% Similarity=-0.012 Sum_probs=124.2
Q ss_pred HHHhCCChhHHHHHHHHHHHCC-CCCC----hhHHHHHHHHHhcccchhhhHHHHHHHhhhcCCC------chhHHHHHH
Q 007519 306 GLVQNELFVEATYLFMEMRAHG-VPPL----NATFSVLFGAAGATANIDLGRQIHCVLMKTESES------DLILENCLI 374 (600)
Q Consensus 306 ~~~~~g~~~~a~~~~~~m~~~g-~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~~l~ 374 (600)
.+...|++++|+..|++..+.- -.++ ..++..+...+...|+.+.|...+..+.+.-... ...+++.+.
T Consensus 112 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg 191 (383)
T 3ulq_A 112 YELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFA 191 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHH
Confidence 3444455555555555444320 0011 1234444444455555555555544333321110 123455566
Q ss_pred HHHHhcCChHHHHHHHhcCC-----CCC----hhhHHHHHHHHHhcCChHHHHHHHHHHHHc----CC-CCChhHHHHHH
Q 007519 375 SMYAKCGVIDNAYNIFSNMV-----SRD----LVSWNSMVMGFSHHGLANETLKVFESMLES----GT-HPNSVTFLGIL 440 (600)
Q Consensus 375 ~~~~~~~~~~~A~~~~~~~~-----~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~-~p~~~~~~~l~ 440 (600)
..|...|++++|...|++.. .++ ..++..+...|...|++++|+..+++..+. +. +....++..+.
T Consensus 192 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~ 271 (383)
T 3ulq_A 192 TNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLIT 271 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHH
Confidence 66677777777777666554 111 135666777777777777777777776652 22 22234566666
Q ss_pred HHhcccCchHHHHHHHHHHHhhcCC--CC-CcchHHHHHHHHhhcCC---hHHHHHHHHhCCCCCCH-HHHHHHHHHHhh
Q 007519 441 SACSHAGLVSRGWELFNAMFDVYKI--QP-GPEHYVSMINLLGRAGK---IKEAEEFVLRLPFEPDH-RIWGALLGACGF 513 (600)
Q Consensus 441 ~~~~~~g~~~~a~~~~~~~~~~~~~--~p-~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~p~~-~~~~~l~~~~~~ 513 (600)
.++...|++++|...++++.+...- .| ....+..+...|...|+ +++|..++++....|+. ..+..+...+.
T Consensus 272 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~- 350 (383)
T 3ulq_A 272 QIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKYYH- 350 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH-
Confidence 7777777777777777776643111 11 12234556677777777 67777777776544433 23444555555
Q ss_pred hhCCHHHHHHHHHHHHhhC
Q 007519 514 CEGNAEIAEHAAKRLLELD 532 (600)
Q Consensus 514 ~~g~~~~a~~~~~~~~~~~ 532 (600)
..|++++|...+++++++.
T Consensus 351 ~~g~~~~A~~~~~~al~~~ 369 (383)
T 3ulq_A 351 ERKNFQKASAYFLKVEQVR 369 (383)
T ss_dssp HTTCHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHH
Confidence 7777777777777776643
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.36 E-value=6e-12 Score=120.42 Aligned_cols=98 Identities=18% Similarity=0.136 Sum_probs=55.3
Q ss_pred HHHHHHHHhcccCchHHHHHHHHHHHhhcCCCCC----cchHHHHHHHHhhcCChHHHHHHHHhCC----CCCC----HH
Q 007519 435 TFLGILSACSHAGLVSRGWELFNAMFDVYKIQPG----PEHYVSMINLLGRAGKIKEAEEFVLRLP----FEPD----HR 502 (600)
Q Consensus 435 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~----~~ 502 (600)
++..+...+...|++++|...++++.+...-.++ ..++..++..|...|++++|.+.+++.. ..++ ..
T Consensus 225 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 304 (338)
T 3ro2_A 225 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 304 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHH
Confidence 3444445555555555555555555432111111 4456666777777777777777666542 0111 23
Q ss_pred HHHHHHHHHhhhhCCHHHHHHHHHHHHhhCC
Q 007519 503 IWGALLGACGFCEGNAEIAEHAAKRLLELDP 533 (600)
Q Consensus 503 ~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p 533 (600)
++..+...+. ..|++++|...+++++++.+
T Consensus 305 ~~~~la~~~~-~~g~~~~A~~~~~~a~~~~~ 334 (338)
T 3ro2_A 305 ACWSLGNAYT-ALGNHDQAMHFAEKHLEISR 334 (338)
T ss_dssp HHHHHHHHHH-HHTCHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHH-HcCChHHHHHHHHHHHHHHH
Confidence 4555666666 78888888888888887665
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=1.1e-11 Score=129.16 Aligned_cols=161 Identities=16% Similarity=0.156 Sum_probs=134.2
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCC-CcchHHH
Q 007519 397 DLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPN-SVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQP-GPEHYVS 474 (600)
Q Consensus 397 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~ 474 (600)
+...|+.+...+.+.|++++|++.|++..+. .|+ ...+..+..++.+.|++++|++.|+++.+. .| +...|..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l--~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l---~P~~~~a~~n 82 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI---SPTFADAYSN 82 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHH
Confidence 4567888888888899999999999888875 444 567788888888999999999999988864 67 4778889
Q ss_pred HHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCCcHHHHhHHHHhhCCc
Q 007519 475 MINLLGRAGKIKEAEEFVLRLP-FEP-DHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRH 552 (600)
Q Consensus 475 l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 552 (600)
++.+|.+.|++++|++.+++.. ..| +...+..+...+. ..|++++|+..|+++++++|+++.++..++.++...|++
T Consensus 83 Lg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~-~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~ 161 (723)
T 4gyw_A 83 MGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHK-DSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDW 161 (723)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccH
Confidence 9999999999999999988864 455 4667888888888 899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh
Q 007519 553 VEEHKLRMDMG 563 (600)
Q Consensus 553 ~~A~~~~~~~~ 563 (600)
++|.+.++...
T Consensus 162 ~~A~~~~~kal 172 (723)
T 4gyw_A 162 TDYDERMKKLV 172 (723)
T ss_dssp TTHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99988655543
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.34 E-value=5.7e-11 Score=112.00 Aligned_cols=179 Identities=12% Similarity=0.065 Sum_probs=102.9
Q ss_pred hHHHHHHHHHHHCCCCCC-hhHHHHHHHHHhcccchhhhHHHHHHHhhhcCCCchh-HHHHHHHHHHhcCChHHHHHHHh
Q 007519 314 VEATYLFMEMRAHGVPPL-NATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLI-LENCLISMYAKCGVIDNAYNIFS 391 (600)
Q Consensus 314 ~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~ 391 (600)
++|..+|++..+. +.|+ ...+..+...+...|+++.|..+|+.+.+.... +.. +|..++..+.+.|++++|..+|+
T Consensus 81 ~~A~~~~~rAl~~-~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~ 158 (308)
T 2ond_A 81 DEAANIYERAIST-LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFK 158 (308)
T ss_dssp HHHHHHHHHHHTT-TTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSS-CTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccc-CccHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 5555555555542 1232 234455555555555666666666555553221 122 55666666666666666666666
Q ss_pred cCC---CCChhhHHHHHHHHH-hcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCC
Q 007519 392 NMV---SRDLVSWNSMVMGFS-HHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQP 467 (600)
Q Consensus 392 ~~~---~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p 467 (600)
+.. +.+...|...+.... ..|++++|..+|++..+. .+-+...+..++..+...|++++|..+|+++.....+.|
T Consensus 159 ~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p 237 (308)
T 2ond_A 159 KAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK-YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPP 237 (308)
T ss_dssp HHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCG
T ss_pred HHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCH
Confidence 654 222333332222211 257777777777777664 233455666666777777777777777777776422344
Q ss_pred --CcchHHHHHHHHhhcCChHHHHHHHHhC
Q 007519 468 --GPEHYVSMINLLGRAGKIKEAEEFVLRL 495 (600)
Q Consensus 468 --~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 495 (600)
....|..++..+.+.|+.++|..+++++
T Consensus 238 ~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 238 EKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp GGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 2456667777777777777777777665
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.32 E-value=1.1e-11 Score=121.24 Aligned_cols=225 Identities=9% Similarity=-0.030 Sum_probs=170.2
Q ss_pred HHHHHhcccchhhhHHHHHHHhhh----cCCC-chhHHHHHHHHHHhcCChHHHHHHHhcCC-----CCC-----hhhHH
Q 007519 338 LFGAAGATANIDLGRQIHCVLMKT----ESES-DLILENCLISMYAKCGVIDNAYNIFSNMV-----SRD-----LVSWN 402 (600)
Q Consensus 338 l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-----~~~-----~~~~~ 402 (600)
....+...|+++.|...+..+.+. +..+ ...++..+...|...|++++|...+++.. .++ ..+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 444677899999999999987764 1111 34678889999999999999999988775 121 35788
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCC-CCh----hHHHHHHHHhcccCchHHHHHHHHHHHhhc---CCCC-CcchHH
Q 007519 403 SMVMGFSHHGLANETLKVFESMLESGTH-PNS----VTFLGILSACSHAGLVSRGWELFNAMFDVY---KIQP-GPEHYV 473 (600)
Q Consensus 403 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~-p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~p-~~~~~~ 473 (600)
.+...|...|++++|+..+++..+.... ++. .++..+..+|...|++++|.+.++++.+.. +..| ...++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 8889999999999999999998764111 111 467788899999999999999999988621 1213 366788
Q ss_pred HHHHHHhhcCChHHHHHHHHhCC------CCCCH-HHHHHHHHHHhhhhCC---HHHHHHHHHHHHhhCCCCCCcHHHHh
Q 007519 474 SMINLLGRAGKIKEAEEFVLRLP------FEPDH-RIWGALLGACGFCEGN---AEIAEHAAKRLLELDPLNAPAHVVLC 543 (600)
Q Consensus 474 ~l~~~~~~~g~~~~A~~~~~~~~------~~p~~-~~~~~l~~~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~ 543 (600)
.++..|.+.|++++|.+.+++.. ..|.. ..+..+...+. ..|+ .++|+..+++. ...|....++..++
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la 346 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYL-SGPDEEAIQGFFDFLESK-MLYADLEDFAIDVA 346 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-SSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHH
Confidence 99999999999999999998863 12322 23455555666 8888 78888888876 33343556788999
Q ss_pred HHHHhhCCcHHHHHHHHHHhh
Q 007519 544 NIYAASGRHVEEHKLRMDMGL 564 (600)
Q Consensus 544 ~~~~~~g~~~~A~~~~~~~~~ 564 (600)
.+|...|++++|...++...+
T Consensus 347 ~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 347 KYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHH
Confidence 999999999999997766544
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.31 E-value=1e-09 Score=112.98 Aligned_cols=124 Identities=10% Similarity=0.163 Sum_probs=74.7
Q ss_pred CCcchHHHHHHHHHcCCChhHHHHHhhhcCC--C-ChhhHHHHHHHHHhcCC---hHHHHHHhhcCCC-----CCceeHH
Q 007519 40 RNVVSYNAMLSGFLQNGRLSEARRLFEEMPE--R-NVVSWTAMICGLADAGR---VCEARKLFEEMPE-----RNVVSWN 108 (600)
Q Consensus 40 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~-----~~~~~~~ 108 (600)
.|..+|..++..+.+.+.++.+..+|+.+.. | ....|...+..-.+.|+ ++.+..+|++... |++..|.
T Consensus 64 ~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW~ 143 (679)
T 4e6h_A 64 TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLWL 143 (679)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHHH
T ss_pred CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHHH
Confidence 4566777777777777788888888887775 2 33456666666667777 7888888877654 5566666
Q ss_pred HHHHHHHHCCCh--------hHHHHHhhcCC------CC-CcccHHHHHHHHH---------hcCCHhHHHHHHHhccc
Q 007519 109 SMVVGLIRNGEL--------NEARKVFNSMP------IK-NVISWNAMIAGYV---------ECCMMGEAIVLFEEMEE 163 (600)
Q Consensus 109 ~l~~~~~~~~~~--------~~a~~~~~~~~------~~-~~~~~~~l~~~~~---------~~~~~~~A~~~~~~~~~ 163 (600)
..+....+.++. +...++|+... .+ +...|...+.... ..++++.+.++|+.+..
T Consensus 144 ~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~ 222 (679)
T 4e6h_A 144 SYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLC 222 (679)
T ss_dssp HHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHh
Confidence 666655554443 22335555532 11 2234555554432 23346677777777664
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.30 E-value=8.4e-11 Score=105.51 Aligned_cols=205 Identities=9% Similarity=0.024 Sum_probs=140.3
Q ss_pred CChhHHHHHHHHHhcccchhhhHHHHHHHhhhcCCCchhHHHHHHHHHHhcCChHHHHHHHhcCC---CCChhhHHHHHH
Q 007519 330 PLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMV---SRDLVSWNSMVM 406 (600)
Q Consensus 330 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~ 406 (600)
.|+..+......+...|++++|...+..+.+...+++...+..+..++...|++++|...|++.. +.+...|..+..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 34566677777788888888888888888777654555666667788888888888888887765 345567777888
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCh-------hHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCCC---cchHHHHH
Q 007519 407 GFSHHGLANETLKVFESMLESGTHPNS-------VTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPG---PEHYVSMI 476 (600)
Q Consensus 407 ~~~~~~~~~~a~~~~~~m~~~~~~p~~-------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~l~ 476 (600)
++...|++++|+..+++..+.. +.+. ..|..+...+...|++++|.+.|+++.+ ..|+ ...+..++
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD---VTSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---SSCHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh---cCCCcccHHHHHHHH
Confidence 8888888888888888887742 2233 3355666677777888888888888774 3554 45667777
Q ss_pred HHHhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCCcHHHHhHHH
Q 007519 477 NLLGRAGKIKEAEEFVLRLP--FEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIY 546 (600)
Q Consensus 477 ~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 546 (600)
.+|...|+. .++++. ...+...+..... . ..+.+++|+..++++++++|+++.+...+..+.
T Consensus 161 ~~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~--~-~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~ 224 (228)
T 4i17_A 161 VLFYNNGAD-----VLRKATPLASSNKEKYASEKA--K-ADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVK 224 (228)
T ss_dssp HHHHHHHHH-----HHHHHGGGTTTCHHHHHHHHH--H-HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHH-----HHHHHHhcccCCHHHHHHHHH--H-HHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 777655543 222221 1222333333322 2 456779999999999999998877777766554
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.29 E-value=3.4e-11 Score=103.98 Aligned_cols=161 Identities=14% Similarity=0.049 Sum_probs=81.6
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhcCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhc
Q 007519 368 ILENCLISMYAKCGVIDNAYNIFSNMV---SRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACS 444 (600)
Q Consensus 368 ~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~ 444 (600)
..+..+...+...|++++|...++++. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 344555666666677777777776665 2345555666666666666666666666665542 233444445555555
Q ss_pred ccCchHHHHHHHHHHHhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHhhhhCCHHHH
Q 007519 445 HAGLVSRGWELFNAMFDVYKIQP-GPEHYVSMINLLGRAGKIKEAEEFVLRLP--FEPDHRIWGALLGACGFCEGNAEIA 521 (600)
Q Consensus 445 ~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~g~~~~a 521 (600)
..|++++|.+.++++.+. .| +...+..++..+...|++++|.+.++++. .+.+...+..+...+. ..|++++|
T Consensus 88 ~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~-~~~~~~~A 163 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEA---NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYE-QMGRHEEA 163 (186)
T ss_dssp HHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHH
T ss_pred HhcCHHHHHHHHHHHHhc---CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHH-HcCCHHHH
Confidence 555555555555555543 22 23344444444444444444444444432 1112333333333343 44444444
Q ss_pred HHHHHHHHhhCC
Q 007519 522 EHAAKRLLELDP 533 (600)
Q Consensus 522 ~~~~~~~~~~~p 533 (600)
...++++++..|
T Consensus 164 ~~~~~~~~~~~~ 175 (186)
T 3as5_A 164 LPHFKKANELDE 175 (186)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHcCC
Confidence 444444444444
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.29 E-value=1.6e-10 Score=99.76 Aligned_cols=163 Identities=17% Similarity=0.126 Sum_probs=140.2
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCC-CcchHHHHHH
Q 007519 399 VSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQP-GPEHYVSMIN 477 (600)
Q Consensus 399 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~ 477 (600)
..|..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+. .| +...+..++.
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~a~ 84 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLAD---APDNVKVATVLGL 84 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCCHHHHHHHHH
Confidence 456777888999999999999999987642 445677888889999999999999999999875 44 5778889999
Q ss_pred HHhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCCcHHHHhHHHHhhCCcHHH
Q 007519 478 LLGRAGKIKEAEEFVLRLP--FEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEE 555 (600)
Q Consensus 478 ~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 555 (600)
.+...|++++|.+.++++. .+.+...+..+...+. ..|++++|+..++++++..|+++.++..++.++...|++++|
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 163 (186)
T 3as5_A 85 TYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALD-NLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEA 163 (186)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHH-HcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHH
Confidence 9999999999999998874 3446677777888888 999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcC
Q 007519 556 HKLRMDMGLKG 566 (600)
Q Consensus 556 ~~~~~~~~~~~ 566 (600)
.+.++...+..
T Consensus 164 ~~~~~~~~~~~ 174 (186)
T 3as5_A 164 LPHFKKANELD 174 (186)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHcC
Confidence 99887765543
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.29 E-value=1.9e-09 Score=104.82 Aligned_cols=51 Identities=14% Similarity=-0.040 Sum_probs=23.6
Q ss_pred HHHHhcCChHHHHHHHhhCCC----CCh----hhHHHHHHHHHhCCChhHHHHHHHHHH
Q 007519 274 DGYLSVGQVSNAYYLFHNMPD----RDA----VAWTAMISGLVQNELFVEATYLFMEMR 324 (600)
Q Consensus 274 ~~~~~~~~~~~A~~~~~~~~~----~~~----~~~~~li~~~~~~g~~~~a~~~~~~m~ 324 (600)
..+...|++++|...+++... .+. .+++.+...+...|++++|...+++..
T Consensus 22 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 80 (373)
T 1hz4_A 22 QVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTE 80 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 344455555555555444211 111 123344444555555555555555544
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.28 E-value=3.6e-12 Score=120.53 Aligned_cols=97 Identities=10% Similarity=0.050 Sum_probs=57.4
Q ss_pred hhhHHHHHHHHHhCCChhHHHHHHHHHHHC-------CCCCChhHHHHHHHHHhcccchhhhHHHHHHHhhhc------C
Q 007519 297 AVAWTAMISGLVQNELFVEATYLFMEMRAH-------GVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTE------S 363 (600)
Q Consensus 297 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-------g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~ 363 (600)
..++..+...+...|++++|+.+++++.+. ..+.....+..+...+...|+++.|...+..+.+.. .
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 456788888888999999999999888763 112223345555556666667776666666554431 1
Q ss_pred -CCchhHHHHHHHHHHhcCChHHHHHHHhcC
Q 007519 364 -ESDLILENCLISMYAKCGVIDNAYNIFSNM 393 (600)
Q Consensus 364 -~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 393 (600)
+....++..+...|...|++++|...++++
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 137 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRA 137 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHH
Confidence 112334444455555555555555554443
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.27 E-value=1e-11 Score=117.35 Aligned_cols=244 Identities=13% Similarity=0.086 Sum_probs=139.3
Q ss_pred CchhHHHHHHHHHhcCChHHHHHHHhhCCC--------C---ChhhHHHHHHHHHhCCChhHHHHHHHHHHHC------C
Q 007519 265 DEISWTSMIDGYLSVGQVSNAYYLFHNMPD--------R---DAVAWTAMISGLVQNELFVEATYLFMEMRAH------G 327 (600)
Q Consensus 265 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--------~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------g 327 (600)
...++..+...+...|++++|...|+++.. . ...++..+...|...|++++|+..+++.... +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 445678888999999999999999988754 1 2356788889999999999999999998764 2
Q ss_pred CCC-ChhHHHHHHHHHhcccchhhhHHHHHHHhhhcCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHH
Q 007519 328 VPP-LNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVM 406 (600)
Q Consensus 328 ~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~ 406 (600)
-.| ....+..+...+...|+++.|...+..+.+..... +..-.+.....+..+..
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~------------------------~~~~~~~~~~~~~~la~ 161 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKV------------------------LGKDHPDVAKQLNNLAL 161 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHH------------------------HCTTCHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHh------------------------cCCCChHHHHHHHHHHH
Confidence 223 24567778888999999999999998766531000 00000011223444455
Q ss_pred HHHhcCChHHHHHHHHHHHHc------CCCCC-hhHHHHHHHHhcccCchHHHHHHHHHHHhhc------CCCCC-cchH
Q 007519 407 GFSHHGLANETLKVFESMLES------GTHPN-SVTFLGILSACSHAGLVSRGWELFNAMFDVY------KIQPG-PEHY 472 (600)
Q Consensus 407 ~~~~~~~~~~a~~~~~~m~~~------~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~------~~~p~-~~~~ 472 (600)
.+...|++++|+++++++.+. +..|. ..++..+..++...|++++|.+.++++.+.. ...+. ...+
T Consensus 162 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 241 (311)
T 3nf1_A 162 LCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIW 241 (311)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHH
Confidence 555555555555555555442 11222 2344555566666666666666666665421 11121 1122
Q ss_pred HH------HHHHHhhcCChHHHHHHHHhCC-CCCC-HHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCC
Q 007519 473 VS------MINLLGRAGKIKEAEEFVLRLP-FEPD-HRIWGALLGACGFCEGNAEIAEHAAKRLLELDP 533 (600)
Q Consensus 473 ~~------l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p 533 (600)
.. +...+...+.+.+|...+.... ..|+ ..++..+...+. ..|++++|+..+++++++.|
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~l~~ 309 (311)
T 3nf1_A 242 MHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYR-RQGKFEAAETLEEAAMRSRK 309 (311)
T ss_dssp HHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHhh
Confidence 11 2222233344444444454443 2232 345566666666 77777777777777777665
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.26 E-value=1e-09 Score=106.85 Aligned_cols=226 Identities=9% Similarity=0.037 Sum_probs=108.2
Q ss_pred HHHHHhCCChhHHHHHHHHHHHCCC-CCC----hhHHHHHHHHHhcccchhhhHHHHHHHhhhcCC------CchhHHHH
Q 007519 304 ISGLVQNELFVEATYLFMEMRAHGV-PPL----NATFSVLFGAAGATANIDLGRQIHCVLMKTESE------SDLILENC 372 (600)
Q Consensus 304 i~~~~~~g~~~~a~~~~~~m~~~g~-~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~------~~~~~~~~ 372 (600)
...+...|++++|+..|++..+... .++ ..++..+...+...|+++.|...+..+.+.... ....+++.
T Consensus 108 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 187 (378)
T 3q15_A 108 GMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFV 187 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHH
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHH
Confidence 3445566677777777666654310 112 123344444555555555555555543332110 01233445
Q ss_pred HHHHHHhcCChHHHHHHHhcCCC-----CC----hhhHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCCChhHHHHH
Q 007519 373 LISMYAKCGVIDNAYNIFSNMVS-----RD----LVSWNSMVMGFSHHGLANETLKVFESMLES----GTHPNSVTFLGI 439 (600)
Q Consensus 373 l~~~~~~~~~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~p~~~~~~~l 439 (600)
+...|...|++++|...|++... ++ ..++..+..+|...|++++|+..+++..+. +.+....++..+
T Consensus 188 lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l 267 (378)
T 3q15_A 188 IAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGL 267 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHH
Confidence 55555555666555555554431 11 234445555566666666666666655541 111223444555
Q ss_pred HHHhcccCchHHHHHHHHHHHhhcCCCCC---cchHHHHHHHHhhcCC---hHHHHHHHHhCCCCCCHH-HHHHHHHHHh
Q 007519 440 LSACSHAGLVSRGWELFNAMFDVYKIQPG---PEHYVSMINLLGRAGK---IKEAEEFVLRLPFEPDHR-IWGALLGACG 512 (600)
Q Consensus 440 ~~~~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~p~~~-~~~~l~~~~~ 512 (600)
...+...|++++|...+++..+...-.++ ...+..+...|...|+ +++|...+++....|+.. .+..+...+.
T Consensus 268 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~ 347 (378)
T 3q15_A 268 SWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVFE 347 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHH
Confidence 55556666666666666655543221111 2233444445555555 555555555544333222 2333333444
Q ss_pred hhhCCHHHHHHHHHHHHh
Q 007519 513 FCEGNAEIAEHAAKRLLE 530 (600)
Q Consensus 513 ~~~g~~~~a~~~~~~~~~ 530 (600)
..|++++|...++++++
T Consensus 348 -~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 348 -SSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp -HTTCHHHHHHHHHHHHH
T ss_pred -HCCCHHHHHHHHHHHHH
Confidence 55566666655555554
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.25 E-value=5.8e-11 Score=119.02 Aligned_cols=178 Identities=9% Similarity=-0.018 Sum_probs=152.6
Q ss_pred hHHHHHHHhcCC---CCChhhHHHHHHHHHhcCCh-HHHHHHHHHHHHcCCCCChhHHHHHHHHhcccCchHHHHHHHHH
Q 007519 383 IDNAYNIFSNMV---SRDLVSWNSMVMGFSHHGLA-NETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNA 458 (600)
Q Consensus 383 ~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 458 (600)
++++...++... +.+...+..+...+...|++ ++|++.|++..+.. +.+...+..+..+|...|++++|.+.|++
T Consensus 84 ~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 455555555443 45778899999999999999 99999999999863 34467888999999999999999999999
Q ss_pred HHhhcCCCCCcchHHHHHHHHhhc---------CChHHHHHHHHhCC-CCC-CHHHHHHHHHHHhhhh--------CCHH
Q 007519 459 MFDVYKIQPGPEHYVSMINLLGRA---------GKIKEAEEFVLRLP-FEP-DHRIWGALLGACGFCE--------GNAE 519 (600)
Q Consensus 459 ~~~~~~~~p~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~--------g~~~ 519 (600)
+.+. .|+...+..++.+|... |++++|.+.+++.. ..| +...|..+..++. .. |+++
T Consensus 163 al~~---~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~-~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 163 ALTH---CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYL-SLYFNTGQNPKISQ 238 (474)
T ss_dssp HHTT---CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHHHHTTCCHHHHH
T ss_pred HHhh---CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HHHHhhccccchHH
Confidence 9854 68888999999999999 99999999999874 444 5678888888888 88 9999
Q ss_pred HHHHHHHHHHhhCC---CCCCcHHHHhHHHHhhCCcHHHHHHHHHHhhc
Q 007519 520 IAEHAAKRLLELDP---LNAPAHVVLCNIYAASGRHVEEHKLRMDMGLK 565 (600)
Q Consensus 520 ~a~~~~~~~~~~~p---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 565 (600)
+|+..++++++++| +++.++..++.+|...|++++|.+.++...+.
T Consensus 239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 287 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAAL 287 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999999999999 99999999999999999999999977666543
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.25 E-value=1.3e-10 Score=104.32 Aligned_cols=185 Identities=12% Similarity=0.015 Sum_probs=84.4
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhcCC---C-CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHH
Q 007519 368 ILENCLISMYAKCGVIDNAYNIFSNMV---S-RDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPN-SVTFLGILSA 442 (600)
Q Consensus 368 ~~~~~l~~~~~~~~~~~~A~~~~~~~~---~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~ 442 (600)
..+......+...|++++|...|++.. + ++...+..+..++...|++++|+..+++..+. .|+ ...+..+..+
T Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~ 85 (228)
T 4i17_A 8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK--NYNLANAYIGKSAA 85 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh--CcchHHHHHHHHHH
Confidence 444444555555555555555555443 2 34444444555555555555555555555542 222 2344444455
Q ss_pred hcccCchHHHHHHHHHHHhhcCCCCC-c-------chHHHHHHHHhhcCChHHHHHHHHhCC-CCCC--H-HHHHHHHHH
Q 007519 443 CSHAGLVSRGWELFNAMFDVYKIQPG-P-------EHYVSMINLLGRAGKIKEAEEFVLRLP-FEPD--H-RIWGALLGA 510 (600)
Q Consensus 443 ~~~~g~~~~a~~~~~~~~~~~~~~p~-~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~--~-~~~~~l~~~ 510 (600)
+...|++++|...++++.+. .|+ . ..|..++..+...|++++|.+.+++.. ..|+ . ..+..+...
T Consensus 86 ~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 162 (228)
T 4i17_A 86 YRDMKNNQEYIATLTEGIKA---VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVL 162 (228)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHH
Confidence 55555555555555555443 232 2 234444455555555555555554432 3343 2 223333333
Q ss_pred HhhhhCCHHHHHHHHHHHHhhCCCCCCcHHHHhHHHHhhCCcHHHHHHHHHHhhc
Q 007519 511 CGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLK 565 (600)
Q Consensus 511 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 565 (600)
+. .. +...++++..+.+.++..+.. ......|.+++|...++...+.
T Consensus 163 ~~-~~-----~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~~~A~~~~~~a~~l 209 (228)
T 4i17_A 163 FY-NN-----GADVLRKATPLASSNKEKYAS--EKAKADAAFKKAVDYLGEAVTL 209 (228)
T ss_dssp HH-HH-----HHHHHHHHGGGTTTCHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HH-HH-----HHHHHHHHHhcccCCHHHHHH--HHHHHHHHHHHHHHHHHHHhhc
Confidence 32 22 222334444444333222221 1223334458898877665544
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.18 E-value=1.2e-09 Score=106.31 Aligned_cols=230 Identities=11% Similarity=-0.016 Sum_probs=114.9
Q ss_pred HHHHHHhcCChhHHHHHHccCCC-----CC----cchHHHHHHHHHhcCChhHHHHHHHHHHhhhcCCCC--C-ChhhHH
Q 007519 172 MISGYCRAGEVEEGYCLFRRMPR-----KN----VVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNN--C-NVQSCN 239 (600)
Q Consensus 172 l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~-~~~~~~ 239 (600)
....+...|++++|...|++..+ ++ ..++..+...+...|+++.|+..+++..+.+..... + ...+++
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 34455667777777777765542 22 235667777777788888888877777765322111 1 134566
Q ss_pred HHHHHHHhcCChhhHHHHhcccCCCCchhHHHHHHHHHhcCChHHHHHHHhhCCCC--ChhhHHHHHHHHHhCCChhHHH
Q 007519 240 SMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDR--DAVAWTAMISGLVQNELFVEAT 317 (600)
Q Consensus 240 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~ 317 (600)
.+..+|...|++++|...+++... +......+ ...++..+...|...|++++|+
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~------------------------~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~ 242 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALE------------------------LAMDIQNDRFIAISLLNIANSYDRSGDDQMAV 242 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH------------------------HHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHH------------------------HHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 666777777777777776655431 11111110 1123444555555555555555
Q ss_pred HHHHHHHHC----CCCCChhHHHHHHHHHhcccchhhhHHHHHHHhhhcCC----CchhHHHHHHHHHHhcCC---hHHH
Q 007519 318 YLFMEMRAH----GVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESE----SDLILENCLISMYAKCGV---IDNA 386 (600)
Q Consensus 318 ~~~~~m~~~----g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~---~~~A 386 (600)
..|++..+. +.+....++..+..++.+.|+.+.|...++...+.... .....+..+...+...++ +.+|
T Consensus 243 ~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~a 322 (378)
T 3q15_A 243 EHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDL 322 (378)
T ss_dssp HHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHH
T ss_pred HHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence 555554431 11111233444444444555555555554443332111 111223333344444444 5555
Q ss_pred HHHHhcCCC--CChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 007519 387 YNIFSNMVS--RDLVSWNSMVMGFSHHGLANETLKVFESML 425 (600)
Q Consensus 387 ~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 425 (600)
...+++... .....+..+...|...|++++|...|++..
T Consensus 323 l~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al 363 (378)
T 3q15_A 323 LSYFEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVL 363 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhCCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 555554331 112234445555556666666666555544
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.15 E-value=4.4e-10 Score=104.93 Aligned_cols=185 Identities=12% Similarity=0.026 Sum_probs=118.1
Q ss_pred HHHHhcCChHHHHHHHhcCCC-------C--ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCC---CCC--hhHHHHHH
Q 007519 375 SMYAKCGVIDNAYNIFSNMVS-------R--DLVSWNSMVMGFSHHGLANETLKVFESMLESGT---HPN--SVTFLGIL 440 (600)
Q Consensus 375 ~~~~~~~~~~~A~~~~~~~~~-------~--~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~---~p~--~~~~~~l~ 440 (600)
..|...|++++|...|.+... + ...+|+.+..+|...|++++|+..+++..+... .+. ..++..+.
T Consensus 45 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg 124 (292)
T 1qqe_A 45 TIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELG 124 (292)
T ss_dssp HHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 345566777766666665531 1 134677777788888888888888877665311 111 24566777
Q ss_pred HHhccc-CchHHHHHHHHHHHhhcCCCCC----cchHHHHHHHHhhcCChHHHHHHHHhCC-CCCCH--------HHHHH
Q 007519 441 SACSHA-GLVSRGWELFNAMFDVYKIQPG----PEHYVSMINLLGRAGKIKEAEEFVLRLP-FEPDH--------RIWGA 506 (600)
Q Consensus 441 ~~~~~~-g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~--------~~~~~ 506 (600)
..|... |++++|...|+++.+...-..+ ..++..++..|.+.|++++|...+++.. ..|+. ..+..
T Consensus 125 ~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 204 (292)
T 1qqe_A 125 EILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLK 204 (292)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHH
T ss_pred HHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHH
Confidence 778875 8889888888888764211111 3467788888899999999998888753 22321 14555
Q ss_pred HHHHHhhhhCCHHHHHHHHHHHHhhCCCCCCc-----HHHHhHHHH--hhCCcHHHHHHHH
Q 007519 507 LLGACGFCEGNAEIAEHAAKRLLELDPLNAPA-----HVVLCNIYA--ASGRHVEEHKLRM 560 (600)
Q Consensus 507 l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~-----~~~l~~~~~--~~g~~~~A~~~~~ 560 (600)
+..++. ..|++++|+..++++++++|+.+.. +..++.++. ..+++++|...++
T Consensus 205 lg~~~~-~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~ 264 (292)
T 1qqe_A 205 KGLCQL-AATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFD 264 (292)
T ss_dssp HHHHHH-HTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHT
T ss_pred HHHHHH-HcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhc
Confidence 666666 8899999999999999988865543 334555554 4466777777663
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.14 E-value=1.1e-08 Score=99.34 Aligned_cols=217 Identities=11% Similarity=-0.075 Sum_probs=98.5
Q ss_pred HHHhcCChhHHHHHHHHHHhhhcCCCCCCh----hhHHHHHHHHHhcCChhhHHHHhcccCC-----CCc----hhHHHH
Q 007519 206 GFAWNGFHKESLLLFIEMKGICDNGNNCNV----QSCNSMINGYIRFGRLEEAQNLFDTVPV-----RDE----ISWTSM 272 (600)
Q Consensus 206 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~----~~~~~l 272 (600)
.+...|++++|...+++.... ....+. .+++.+...+...|++++|...+++... .+. .++..+
T Consensus 23 ~~~~~g~~~~A~~~~~~al~~---~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 99 (373)
T 1hz4_A 23 VAINDGNPDEAERLAKLALEE---LPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 99 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHT---CCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHc---CCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 344556666666666555543 101111 1233444455555555555555554431 111 112334
Q ss_pred HHHHHhcCChHHHHHHHhhCCC-------C----ChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC----ChhHHHH
Q 007519 273 IDGYLSVGQVSNAYYLFHNMPD-------R----DAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPP----LNATFSV 337 (600)
Q Consensus 273 ~~~~~~~~~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p----~~~~~~~ 337 (600)
...+...|++++|...+++... + ....+..+...+...|++++|...+++........ ...++..
T Consensus 100 a~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 179 (373)
T 1hz4_A 100 SEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAM 179 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHH
Confidence 4444455555555544443321 1 11234445556666677777766666655432111 1123444
Q ss_pred HHHHHhcccchhhhHHHHHHHhhhcCCCch-hHHH-----HHHHHHHhcCChHHHHHHHhcCCCCC-------hhhHHHH
Q 007519 338 LFGAAGATANIDLGRQIHCVLMKTESESDL-ILEN-----CLISMYAKCGVIDNAYNIFSNMVSRD-------LVSWNSM 404 (600)
Q Consensus 338 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~-----~l~~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~l 404 (600)
+...+...|+++.|...++........++. ..+. ..+..+...|++++|...+++...+. ...+..+
T Consensus 180 la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~l 259 (373)
T 1hz4_A 180 LIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNI 259 (373)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHH
Confidence 444555566666666666554433211111 0111 12233445566666666665554221 1123344
Q ss_pred HHHHHhcCChHHHHHHHHHHH
Q 007519 405 VMGFSHHGLANETLKVFESML 425 (600)
Q Consensus 405 ~~~~~~~~~~~~a~~~~~~m~ 425 (600)
...+...|++++|...+++..
T Consensus 260 a~~~~~~g~~~~A~~~l~~a~ 280 (373)
T 1hz4_A 260 ARAQILLGEFEPAEIVLEELN 280 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHH
Confidence 455555555555555555543
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=4.4e-10 Score=117.18 Aligned_cols=162 Identities=12% Similarity=0.140 Sum_probs=139.3
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHhcCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHH
Q 007519 366 DLILENCLISMYAKCGVIDNAYNIFSNMV---SRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPN-SVTFLGILS 441 (600)
Q Consensus 366 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~ 441 (600)
+...++.|..+|.+.|++++|+..|++.. +.+...|..+..+|.+.|++++|+..|++..+. .|+ ...|..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 45677888899999999999999998876 556788999999999999999999999999885 454 578888899
Q ss_pred HhcccCchHHHHHHHHHHHhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHhhhhCCH
Q 007519 442 ACSHAGLVSRGWELFNAMFDVYKIQP-GPEHYVSMINLLGRAGKIKEAEEFVLRLP-FEP-DHRIWGALLGACGFCEGNA 518 (600)
Q Consensus 442 ~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~g~~ 518 (600)
++...|++++|.+.|+++.+. .| +...+..++.+|.+.|++++|++.+++.. ..| +...+..+...+. ..|++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l---~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~-~~g~~ 161 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQI---NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQ-IVCDW 161 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHH-HTTCC
T ss_pred HHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHH-hcccH
Confidence 999999999999999999864 67 57889999999999999999999998864 556 4667888888888 99999
Q ss_pred HHHHHHHHHHHhhCC
Q 007519 519 EIAEHAAKRLLELDP 533 (600)
Q Consensus 519 ~~a~~~~~~~~~~~p 533 (600)
++|++.+++++++.|
T Consensus 162 ~~A~~~~~kal~l~~ 176 (723)
T 4gyw_A 162 TDYDERMKKLVSIVA 176 (723)
T ss_dssp TTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCh
Confidence 999999999988654
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.08 E-value=2.3e-09 Score=98.33 Aligned_cols=186 Identities=12% Similarity=0.004 Sum_probs=126.2
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHhcCC--CC-C---hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCC-hhHHH
Q 007519 366 DLILENCLISMYAKCGVIDNAYNIFSNMV--SR-D---LVSWNSMVMGFSHHGLANETLKVFESMLESGT-HPN-SVTFL 437 (600)
Q Consensus 366 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~-~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~p~-~~~~~ 437 (600)
+...+..+...+.+.|++++|...|+++. .| + ...+..+..++...|++++|+..|++..+... .|. ...+.
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 34444556666777788888888877765 22 3 45667777788888888888888888877521 111 23455
Q ss_pred HHHHHhcc--------cCchHHHHHHHHHHHhhcCCCCC-cchH-----------------HHHHHHHhhcCChHHHHHH
Q 007519 438 GILSACSH--------AGLVSRGWELFNAMFDVYKIQPG-PEHY-----------------VSMINLLGRAGKIKEAEEF 491 (600)
Q Consensus 438 ~l~~~~~~--------~g~~~~a~~~~~~~~~~~~~~p~-~~~~-----------------~~l~~~~~~~g~~~~A~~~ 491 (600)
.+..++.. .|++++|...|+++.+. .|+ .... ..++..|.+.|++++|...
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 170 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR---YPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVT 170 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH---CTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHH---CcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHH
Confidence 55566666 78888888888888765 342 2333 5668889999999999999
Q ss_pred HHhCC-CCCC----HHHHHHHHHHHhhhh----------CCHHHHHHHHHHHHhhCCCCCC---cHHHHhHHHHhhCCcH
Q 007519 492 VLRLP-FEPD----HRIWGALLGACGFCE----------GNAEIAEHAAKRLLELDPLNAP---AHVVLCNIYAASGRHV 553 (600)
Q Consensus 492 ~~~~~-~~p~----~~~~~~l~~~~~~~~----------g~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~ 553 (600)
++++. ..|+ ...+..+..++. .. |++++|+..++++++..|+++. +...+..++...|+++
T Consensus 171 ~~~~l~~~p~~~~~~~a~~~l~~~~~-~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~~~~~~~~~~ 249 (261)
T 3qky_A 171 YEAVFDAYPDTPWADDALVGAMRAYI-AYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEELYTRARQRLTELE 249 (261)
T ss_dssp HHHHHHHCTTSTTHHHHHHHHHHHHH-HHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCchHHHHHHHHHHHHH-HhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHhh
Confidence 98863 3333 345566666665 55 8899999999999999997753 3445555555555554
Q ss_pred HH
Q 007519 554 EE 555 (600)
Q Consensus 554 ~A 555 (600)
++
T Consensus 250 ~~ 251 (261)
T 3qky_A 250 GD 251 (261)
T ss_dssp TC
T ss_pred hh
Confidence 43
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.07 E-value=1e-08 Score=93.51 Aligned_cols=242 Identities=11% Similarity=0.041 Sum_probs=154.8
Q ss_pred HHhcCChHHHHHHHhhCCCCChh-hHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhcccchhhhHHH
Q 007519 276 YLSVGQVSNAYYLFHNMPDRDAV-AWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQI 354 (600)
Q Consensus 276 ~~~~~~~~~A~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~ 354 (600)
..-.|.+..++.-...+...+.. .-.-+.++|...|++... ..-.|....+..+...+ ..+ +...
T Consensus 23 ~fy~G~yq~~i~e~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~-~~~----a~~~ 88 (310)
T 3mv2_B 23 NYYTGNFVQCLQEIEKFSKVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL-DTK----NIEE 88 (310)
T ss_dssp HHTTTCHHHHTHHHHTSSCCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH-TTT----CCHH
T ss_pred HHHhhHHHHHHHHHHhcCccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh-ccc----HHHH
Confidence 34568888888766665442222 222344677777777642 11233333443333333 222 6677
Q ss_pred HHHHhhhcCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC-----CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 007519 355 HCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVS-----RDLVSWNSMVMGFSHHGLANETLKVFESMLESGT 429 (600)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~ 429 (600)
++...+.+ .++......+..++...|++++|++++.+... .+...+..++..+.+.|+.+.|.+.+++|.+.
T Consensus 89 l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~-- 165 (310)
T 3mv2_B 89 LENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA-- 165 (310)
T ss_dssp HHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred HHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--
Confidence 77666554 33444445777888888999999999888742 34566777788888999999999999998774
Q ss_pred CC-----ChhHHHHHHHHh--cccC--chHHHHHHHHHHHhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhCCC---
Q 007519 430 HP-----NSVTFLGILSAC--SHAG--LVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPF--- 497 (600)
Q Consensus 430 ~p-----~~~~~~~l~~~~--~~~g--~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--- 497 (600)
.| +..+...+..++ ...| +.+.|..+|+++.+. .|+...-..+..++.+.|++++|.+.++.+..
T Consensus 166 ~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p 242 (310)
T 3mv2_B 166 IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYY 242 (310)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHH
T ss_pred CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 66 355555565553 2233 888899999988754 34422233344478888999999988876431
Q ss_pred --------CCC-HHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCCcHH
Q 007519 498 --------EPD-HRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHV 540 (600)
Q Consensus 498 --------~p~-~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 540 (600)
.|+ +.++..++.... ..|+ +|.++++++.+..|++|.+..
T Consensus 243 ~~~~k~~~~p~~~~~LaN~i~l~~-~lgk--~a~~l~~qL~~~~P~hp~i~d 291 (310)
T 3mv2_B 243 SVEQKENAVLYKPTFLANQITLAL-MQGL--DTEDLTNQLVKLDHEHAFIKH 291 (310)
T ss_dssp HTTTCHHHHSSHHHHHHHHHHHHH-HTTC--TTHHHHHHHHHTTCCCHHHHH
T ss_pred cccccccCCCCCHHHHHHHHHHHH-HhCh--HHHHHHHHHHHhCCCChHHHH
Confidence 244 445545555555 5676 788889999999997765544
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.07 E-value=1.3e-08 Score=92.90 Aligned_cols=174 Identities=10% Similarity=0.016 Sum_probs=94.0
Q ss_pred HHHHHhcCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-ChhHHHHHHHHhcccCchHHHHHHHHHHHh
Q 007519 386 AYNIFSNMV---SRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHP-NSVTFLGILSACSHAGLVSRGWELFNAMFD 461 (600)
Q Consensus 386 A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 461 (600)
|...|++.. .++..++..+..++...|++++|++++.+....+-.+ +...+..++..+.+.|+.+.|.+.+++|.+
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 445555443 2334444455566666666777766666655433211 234455555666666667777766666654
Q ss_pred hcCCCC-----CcchHHHHHHH--HhhcC--ChHHHHHHHHhCC-CCCCHHHHHHHHHHHhhhhCCHHHHHHHHHHHHhh
Q 007519 462 VYKIQP-----GPEHYVSMINL--LGRAG--KIKEAEEFVLRLP-FEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLEL 531 (600)
Q Consensus 462 ~~~~~p-----~~~~~~~l~~~--~~~~g--~~~~A~~~~~~~~-~~p~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~ 531 (600)
. .| +..+...|+.+ ....| ++++|..+|+++. ..|+..+-..++.++. ..|++++|...++++.+.
T Consensus 165 ~---~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~-~~g~~~eAe~~L~~l~~~ 240 (310)
T 3mv2_B 165 A---IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHL-QQRNIAEAQGIVELLLSD 240 (310)
T ss_dssp H---SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHH-HHTCHHHHHHHHHHHHSH
T ss_pred c---CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHH-HcCCHHHHHHHHHHHHHh
Confidence 3 44 23344444433 22233 6666666666654 3344222223333444 666677776666665554
Q ss_pred ----------CCCCCCcHHHHhHHHHhhCCcHHHHHHHHHHhhc
Q 007519 532 ----------DPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLK 565 (600)
Q Consensus 532 ----------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 565 (600)
+|+++.++..++......|+ +|.++++.+++.
T Consensus 241 ~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 241 YYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp HHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred cccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 35566666565555555665 566666555543
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=1.2e-10 Score=96.40 Aligned_cols=138 Identities=11% Similarity=0.001 Sum_probs=82.7
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCC-CcchHHHHHHHHhhcCCh
Q 007519 408 FSHHGLANETLKVFESMLESGTHPN-SVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQP-GPEHYVSMINLLGRAGKI 485 (600)
Q Consensus 408 ~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~ 485 (600)
+...|++++|+..++..... .|+ ...+..+...|...|++++|.+.|+++.+. .| ++..|..++.+|.+.|++
T Consensus 7 ~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~---~p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 7 RRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV---QERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCch
Confidence 34445566666666555431 222 233444556666666666666666666643 45 456666666777777777
Q ss_pred HHHHHHHHhCC-CCC-CHHHHHHHHHHHhhhhCCHHHHHHH-HHHHHhhCCCCCCcHHHHhHHHHhhCC
Q 007519 486 KEAEEFVLRLP-FEP-DHRIWGALLGACGFCEGNAEIAEHA-AKRLLELDPLNAPAHVVLCNIYAASGR 551 (600)
Q Consensus 486 ~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~g~~~~a~~~-~~~~~~~~p~~~~~~~~l~~~~~~~g~ 551 (600)
++|...|++.. ..| +...+..+...+. ..|+.++|.+. ++++++++|+++.+|.....++...|+
T Consensus 82 ~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 82 DKAVECYRRSVELNPTQKDLVLKIAELLC-KNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 77776666653 344 3455666666666 66766555443 477777777777777777666666664
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.03 E-value=7.3e-09 Score=94.92 Aligned_cols=170 Identities=14% Similarity=0.058 Sum_probs=134.8
Q ss_pred CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC---hhHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCCC-cc
Q 007519 395 SRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPN---SVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPG-PE 470 (600)
Q Consensus 395 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~ 470 (600)
+.+...+-.+...+...|++++|+..|+++.+.. +.+ ...+..+..++...|++++|...|+++.+.+.-.|. ..
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 90 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ 90 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence 4566777788889999999999999999998753 223 456777888999999999999999999986332332 55
Q ss_pred hHHHHHHHHhh--------cCChHHHHHHHHhCC-CCCCH-HHH-----------------HHHHHHHhhhhCCHHHHHH
Q 007519 471 HYVSMINLLGR--------AGKIKEAEEFVLRLP-FEPDH-RIW-----------------GALLGACGFCEGNAEIAEH 523 (600)
Q Consensus 471 ~~~~l~~~~~~--------~g~~~~A~~~~~~~~-~~p~~-~~~-----------------~~l~~~~~~~~g~~~~a~~ 523 (600)
.+..++.++.. .|++++|.+.|+++. ..|+. ... ..+...+. ..|++++|+.
T Consensus 91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~ 169 (261)
T 3qky_A 91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYE-RRELYEAAAV 169 (261)
T ss_dssp HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HccCHHHHHH
Confidence 67788999988 999999999998864 33432 222 34455667 9999999999
Q ss_pred HHHHHHhhCCCCC---CcHHHHhHHHHhh----------CCcHHHHHHHHHHhhcC
Q 007519 524 AAKRLLELDPLNA---PAHVVLCNIYAAS----------GRHVEEHKLRMDMGLKG 566 (600)
Q Consensus 524 ~~~~~~~~~p~~~---~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~ 566 (600)
.++++++..|+++ ..+..++.+|... |++++|...++.+.+..
T Consensus 170 ~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~ 225 (261)
T 3qky_A 170 TYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF 225 (261)
T ss_dssp HHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC
Confidence 9999999999754 4788999999877 89999999887766543
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.03 E-value=3.9e-10 Score=104.73 Aligned_cols=30 Identities=20% Similarity=0.224 Sum_probs=17.1
Q ss_pred CCCCCcHHHHhHHHHhhCCcHHHHHHHHHH
Q 007519 533 PLNAPAHVVLCNIYAASGRHVEEHKLRMDM 562 (600)
Q Consensus 533 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 562 (600)
|..+.++..++.+|...|++++|..+++..
T Consensus 249 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 278 (283)
T 3edt_B 249 PTVNTTLRSLGALYRRQGKLEAAHTLEDCA 278 (283)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 333445556666666666666666655443
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.02 E-value=1e-09 Score=115.17 Aligned_cols=145 Identities=12% Similarity=-0.030 Sum_probs=65.4
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCC-CcchHHHHH
Q 007519 398 LVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQP-GPEHYVSMI 476 (600)
Q Consensus 398 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~ 476 (600)
...+..+..++...|++++|+..|++..+.. +.+...+..+..++...|++++|.+.|+++.+. .| +...+..++
T Consensus 433 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l---~P~~~~~~~~lg 508 (681)
T 2pzi_A 433 VELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLTGDYDSATKHFTEVLDT---FPGELAPKLALA 508 (681)
T ss_dssp SHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---STTCSHHHHHHH
T ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCChHHHHHHH
Confidence 3444444444444555555555554444421 222334444444444445555555555544432 33 244444444
Q ss_pred HHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCCcHHHHhHHHHh
Q 007519 477 NLLGRAGKIKEAEEFVLRLP-FEP-DHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAA 548 (600)
Q Consensus 477 ~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 548 (600)
.+|.+.|++++ .+.|++.. ..| +...+..+..++. ..|++++|+..++++++++|+++.++..++.++..
T Consensus 509 ~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~-~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~ 580 (681)
T 2pzi_A 509 ATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARS-AEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLS 580 (681)
T ss_dssp HHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC-
T ss_pred HHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHH-HcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHc
Confidence 45555555544 44444432 222 2334444444444 44555555555555555555444444444444443
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.02 E-value=3.6e-09 Score=93.06 Aligned_cols=125 Identities=9% Similarity=0.055 Sum_probs=97.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCC-CcchHHHHHHHHhhc
Q 007519 404 MVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQP-GPEHYVSMINLLGRA 482 (600)
Q Consensus 404 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~ 482 (600)
+..++...|++++|+..|++..+.. +-+...+..+..++...|++++|...|+++.+. .| +...+..++.+|...
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~lg~~~~~~ 135 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQL---EADNLAANIFLGNYYYLT 135 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHH
Confidence 8889999999999999999999863 445677888889999999999999999999875 67 578899999988776
Q ss_pred CC--hHHHHHHHHhCCCCCCHH--HHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCC
Q 007519 483 GK--IKEAEEFVLRLPFEPDHR--IWGALLGACGFCEGNAEIAEHAAKRLLELDPL 534 (600)
Q Consensus 483 g~--~~~A~~~~~~~~~~p~~~--~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~ 534 (600)
|+ .+.+...+++.. .|++. .+.....++. ..|++++|+..+++++++.|+
T Consensus 136 ~~~~~~~~~~~~~~~~-~~~~~~~a~~~~g~~~~-~~~~~~~A~~~~~~al~l~P~ 189 (208)
T 3urz_A 136 AEQEKKKLETDYKKLS-SPTKMQYARYRDGLSKL-FTTRYEKARNSLQKVILRFPS 189 (208)
T ss_dssp HHHHHHHHHHHHC----CCCHHHHHHHHHHHHHH-HHHTHHHHHHHHHHHTTTSCC
T ss_pred hHHHHHHHHHHHHHHh-CCCchhHHHHHHHHHHH-HccCHHHHHHHHHHHHHhCCC
Confidence 64 445666666654 34433 3444444556 789999999999999999994
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.01 E-value=1e-08 Score=91.55 Aligned_cols=183 Identities=7% Similarity=-0.038 Sum_probs=115.7
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhcCC--CCC----hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChh----HH
Q 007519 367 LILENCLISMYAKCGVIDNAYNIFSNMV--SRD----LVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSV----TF 436 (600)
Q Consensus 367 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~----~~ 436 (600)
...+..+...+...|++++|...|+++. .|+ ...+..+..++...|++++|+..|+++.+. .|+.. .+
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~P~~~~~~~a~ 81 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYVM 81 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCcHHHHH
Confidence 3344456667777888888888888775 232 245666777788888888888888887764 33322 23
Q ss_pred HHHHHHhcc------------------cCchHHHHHHHHHHHhhcCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhCCC
Q 007519 437 LGILSACSH------------------AGLVSRGWELFNAMFDVYKIQPG-PEHYVSMINLLGRAGKIKEAEEFVLRLPF 497 (600)
Q Consensus 437 ~~l~~~~~~------------------~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 497 (600)
..+..++.. .|++++|...|+++.+. .|+ ...+..+.....-.+..
T Consensus 82 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~P~~~~a~~a~~~l~~~~~~~------------ 146 (225)
T 2yhc_A 82 YMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG---YPNSQYTTDATKRLVFLKDRL------------ 146 (225)
T ss_dssp HHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT---CTTCTTHHHHHHHHHHHHHHH------------
T ss_pred HHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH---CcCChhHHHHHHHHHHHHHHH------------
Confidence 333333332 45666666666666643 342 22222111100000000
Q ss_pred CCCHHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCC---CcHHHHhHHHHhhCCcHHHHHHHHHHhhcCCccC
Q 007519 498 EPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNA---PAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKV 570 (600)
Q Consensus 498 ~p~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 570 (600)
......+...+. ..|++++|+..++++++..|+++ .++..++.++.+.|++++|.+.++.+...+...+
T Consensus 147 ---~~~~~~~a~~~~-~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~ 218 (225)
T 2yhc_A 147 ---AKYEYSVAEYYT-ERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTL 218 (225)
T ss_dssp ---HHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCC
T ss_pred ---HHHHHHHHHHHH-HcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCch
Confidence 001123344566 89999999999999999999765 5688999999999999999999988887765443
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=98.99 E-value=8.4e-09 Score=95.57 Aligned_cols=198 Identities=13% Similarity=0.078 Sum_probs=115.3
Q ss_pred HHHHHHHHHhcccchhhhHHHHHHHhhh------cC-CCchhHHHHHHHHHHhcCChHHHHHHHhcCCC-------C---
Q 007519 334 TFSVLFGAAGATANIDLGRQIHCVLMKT------ES-ESDLILENCLISMYAKCGVIDNAYNIFSNMVS-------R--- 396 (600)
Q Consensus 334 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-------~--- 396 (600)
++..+...+...|+++.|...+..+.+. +. +....++..+...|...|++++|...+++... +
T Consensus 45 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 124 (283)
T 3edt_B 45 MLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHP 124 (283)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCCh
Confidence 3344444444555555555554443332 11 11244555666666777777777666665531 1
Q ss_pred -ChhhHHHHHHHHHhcCChHHHHHHHHHHHHc------CCCCC-hhHHHHHHHHhcccCchHHHHHHHHHHHhhc-----
Q 007519 397 -DLVSWNSMVMGFSHHGLANETLKVFESMLES------GTHPN-SVTFLGILSACSHAGLVSRGWELFNAMFDVY----- 463 (600)
Q Consensus 397 -~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~------~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----- 463 (600)
...++..+...+...|++++|...+++..+. +-.|. ..++..+..++...|++++|...++++.+..
T Consensus 125 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~ 204 (283)
T 3edt_B 125 DVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEF 204 (283)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Confidence 2356677778888888888888888887764 11232 3566777788888899999999888887531
Q ss_pred -CCCC-CcchHHHHHHHHhhcC------ChHHHHHHHHhCC-CCCC-HHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhC
Q 007519 464 -KIQP-GPEHYVSMINLLGRAG------KIKEAEEFVLRLP-FEPD-HRIWGALLGACGFCEGNAEIAEHAAKRLLELD 532 (600)
Q Consensus 464 -~~~p-~~~~~~~l~~~~~~~g------~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~ 532 (600)
...+ ....+..+...+...+ .+.++...++... ..|+ ..++..+...+. ..|++++|+..++++++..
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~ 282 (283)
T 3edt_B 205 GSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYR-RQGKLEAAHTLEDCASRNR 282 (283)
T ss_dssp SSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTC
T ss_pred CCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhh
Confidence 1223 2334444444444333 3444445555544 2333 345667777787 9999999999999988753
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.97 E-value=2.9e-08 Score=92.49 Aligned_cols=211 Identities=8% Similarity=-0.051 Sum_probs=108.8
Q ss_pred HHHHHhCCChhHHHHHHHHHHHC----CCCCC-hhHHHHHHHHHhcccchhhhHHHHHHHhhhcCCCchhHHHHHHHHHH
Q 007519 304 ISGLVQNELFVEATYLFMEMRAH----GVPPL-NATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYA 378 (600)
Q Consensus 304 i~~~~~~g~~~~a~~~~~~m~~~----g~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 378 (600)
...|...|++++|+..|++..+. |-+++ ..++..+..++...|++++|...++...+.. .
T Consensus 44 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~---------------~ 108 (292)
T 1qqe_A 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIF---------------T 108 (292)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---------------H
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH---------------H
Confidence 44566677777777777665442 11111 2234444444444455555444444332211 1
Q ss_pred hcCChHHHHHHHhcCCCCChhhHHHHHHHHHhc-CChHHHHHHHHHHHHcCCCC-C----hhHHHHHHHHhcccCchHHH
Q 007519 379 KCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHH-GLANETLKVFESMLESGTHP-N----SVTFLGILSACSHAGLVSRG 452 (600)
Q Consensus 379 ~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~m~~~~~~p-~----~~~~~~l~~~~~~~g~~~~a 452 (600)
..|+...+ ..+++.+...|... |++++|+..|++..+..... + ..++..+...+...|++++|
T Consensus 109 ~~g~~~~~-----------a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A 177 (292)
T 1qqe_A 109 HRGQFRRG-----------ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEA 177 (292)
T ss_dssp HTTCHHHH-----------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HcCCHHHH-----------HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHH
Confidence 11111111 23455666666664 77777777777665531000 1 23466666777777777777
Q ss_pred HHHHHHHHhhcCCCCCcc-----hHHHHHHHHhhcCChHHHHHHHHhCC-CCCCHH------HHHHHHHHHh-hhhCCHH
Q 007519 453 WELFNAMFDVYKIQPGPE-----HYVSMINLLGRAGKIKEAEEFVLRLP-FEPDHR------IWGALLGACG-FCEGNAE 519 (600)
Q Consensus 453 ~~~~~~~~~~~~~~p~~~-----~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~------~~~~l~~~~~-~~~g~~~ 519 (600)
...|+++.+...-.+... .+..++.++...|++++|...+++.. ..|+.. .+..+..++. ...++++
T Consensus 178 ~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~ 257 (292)
T 1qqe_A 178 SDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLS 257 (292)
T ss_dssp HHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHH
T ss_pred HHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHH
Confidence 777777765411111111 45666777777777777777777753 344321 2223333332 1335677
Q ss_pred HHHHHHHHHHhhCCCCCCcHH
Q 007519 520 IAEHAAKRLLELDPLNAPAHV 540 (600)
Q Consensus 520 ~a~~~~~~~~~~~p~~~~~~~ 540 (600)
+|+..|+++..++|.+...+.
T Consensus 258 ~A~~~~~~~~~l~~~~~~~~~ 278 (292)
T 1qqe_A 258 EHCKEFDNFMRLDKWKITILN 278 (292)
T ss_dssp HHHHHHTTSSCCCHHHHHHHH
T ss_pred HHHHHhccCCccHHHHHHHHH
Confidence 777777777777764433333
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.97 E-value=9.3e-09 Score=95.48 Aligned_cols=172 Identities=10% Similarity=-0.035 Sum_probs=135.0
Q ss_pred HHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccCchHHHHHHHHHHHhhc
Q 007519 384 DNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVY 463 (600)
Q Consensus 384 ~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 463 (600)
+.....+....+.+...+..+...+...|++++|+..|++..+.. +-+...+..+...+...|++++|...++++...
T Consensus 103 ~~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~- 180 (287)
T 3qou_A 103 EAIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ- 180 (287)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG-
T ss_pred HHHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh-
Confidence 444555555556666777788888999999999999999998852 335567778888999999999999999988754
Q ss_pred CCCCCcchHH-HHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCC--CCc
Q 007519 464 KIQPGPEHYV-SMINLLGRAGKIKEAEEFVLRLP-FEP-DHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLN--APA 538 (600)
Q Consensus 464 ~~~p~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~--~~~ 538 (600)
.|+..... .....+...|+.++|.+.+++.. ..| +...+..+...+. ..|++++|+..++++++.+|++ +..
T Consensus 181 --~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~-~~g~~~~A~~~l~~~l~~~p~~~~~~a 257 (287)
T 3qou_A 181 --DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLH-QVGRNEEALELLFGHLRXDLTAADGQT 257 (287)
T ss_dssp --GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTGGGGHH
T ss_pred --hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHH-HcccHHHHHHHHHHHHhcccccccchH
Confidence 56533322 33334667788888888887764 445 5667788888888 9999999999999999999987 788
Q ss_pred HHHHhHHHHhhCCcHHHHHHHH
Q 007519 539 HVVLCNIYAASGRHVEEHKLRM 560 (600)
Q Consensus 539 ~~~l~~~~~~~g~~~~A~~~~~ 560 (600)
+..++.++...|+.++|...++
T Consensus 258 ~~~l~~~~~~~g~~~~a~~~~r 279 (287)
T 3qou_A 258 RXTFQEILAALGTGDALASXYR 279 (287)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCCCcHHHHHH
Confidence 9999999999999999998444
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.97 E-value=9.5e-09 Score=82.99 Aligned_cols=126 Identities=21% Similarity=0.290 Sum_probs=62.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCCCcchHHHHHHHHh
Q 007519 401 WNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLG 480 (600)
Q Consensus 401 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 480 (600)
|..+...+...|++++|..+++++.+.. +.+...+..+...+...|++++|..+++++... .|
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~------------- 66 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL---DP------------- 66 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CT-------------
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH---CC-------------
Confidence 4445555555556666666555555432 223344444445555555555555555555432 12
Q ss_pred hcCChHHHHHHHHhCCCCCCHHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCCcHHHHhHHHHhhCCcHHHHHHHH
Q 007519 481 RAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRM 560 (600)
Q Consensus 481 ~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 560 (600)
.+...+..+...+. ..|++++|+..++++++..|.++..+..++.++...|++++|...++
T Consensus 67 ------------------~~~~~~~~l~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 127 (136)
T 2fo7_A 67 ------------------RSAEAWYNLGNAYY-KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQ 127 (136)
T ss_dssp ------------------TCHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred ------------------CchHHHHHHHHHHH-HhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHH
Confidence 22333344444444 55555555555555555555444555555555555555555555444
Q ss_pred HH
Q 007519 561 DM 562 (600)
Q Consensus 561 ~~ 562 (600)
.+
T Consensus 128 ~~ 129 (136)
T 2fo7_A 128 KA 129 (136)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.95 E-value=2.2e-08 Score=80.78 Aligned_cols=122 Identities=18% Similarity=0.300 Sum_probs=94.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhcCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcc
Q 007519 369 LENCLISMYAKCGVIDNAYNIFSNMV---SRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSH 445 (600)
Q Consensus 369 ~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 445 (600)
.+..+...+...|++++|..+++++. +.+...+..+...+...|++++|..+++++...+ +.+...+..+...+..
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHH
Confidence 46778889999999999999999875 4567788889999999999999999999998764 4455677777788888
Q ss_pred cCchHHHHHHHHHHHhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHh
Q 007519 446 AGLVSRGWELFNAMFDVYKIQP-GPEHYVSMINLLGRAGKIKEAEEFVLR 494 (600)
Q Consensus 446 ~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 494 (600)
.|++++|.+.++++.+. .| +...+..++..+...|++++|.+.+++
T Consensus 82 ~~~~~~A~~~~~~~~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 128 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALEL---DPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 128 (136)
T ss_dssp TTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHHccHHHHHHHHHH
Confidence 88899988888888764 33 344555556666666666666555544
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.94 E-value=4.6e-08 Score=86.15 Aligned_cols=162 Identities=9% Similarity=-0.057 Sum_probs=123.3
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccC----chHHHHHHHHHHHhhcCCCCCcch
Q 007519 396 RDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAG----LVSRGWELFNAMFDVYKIQPGPEH 471 (600)
Q Consensus 396 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g----~~~~a~~~~~~~~~~~~~~p~~~~ 471 (600)
.++..+..+...|...+++++|+..|++..+.| +...+..+...|.. + ++++|.++|++..+. -++..
T Consensus 16 g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~----g~~~a 87 (212)
T 3rjv_A 16 GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEA----GSKSG 87 (212)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHT----TCHHH
T ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHC----CCHHH
Confidence 456666777777777888888888888887754 45556666666766 6 888899988888653 25667
Q ss_pred HHHHHHHHhh----cCChHHHHHHHHhCC-CCCC---HHHHHHHHHHHhhh----hCCHHHHHHHHHHHHhhCCCCCCcH
Q 007519 472 YVSMINLLGR----AGKIKEAEEFVLRLP-FEPD---HRIWGALLGACGFC----EGNAEIAEHAAKRLLELDPLNAPAH 539 (600)
Q Consensus 472 ~~~l~~~~~~----~g~~~~A~~~~~~~~-~~p~---~~~~~~l~~~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~ 539 (600)
+..|...|.. .+++++|.+++++.. ..|. ...+..+...+. . .++.++|+..++++.+. |+++..+
T Consensus 88 ~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~-~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~ 165 (212)
T 3rjv_A 88 EIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYA-SGVHGPEDDVKASEYFKGSSSL-SRTGYAE 165 (212)
T ss_dssp HHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHH-HTSSSSCCHHHHHHHHHHHHHT-SCTTHHH
T ss_pred HHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHHHc-CCCHHHH
Confidence 7788888877 788999999988865 4442 667777777776 6 67899999999999888 5578888
Q ss_pred HHHhHHHHhh-C-----CcHHHHHHHHHHhhcCC
Q 007519 540 VVLCNIYAAS-G-----RHVEEHKLRMDMGLKGV 567 (600)
Q Consensus 540 ~~l~~~~~~~-g-----~~~~A~~~~~~~~~~~~ 567 (600)
..|+.+|... | ++++|..+++...+.|.
T Consensus 166 ~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 166 YWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 8999888754 3 88999998877776654
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=2.7e-09 Score=88.22 Aligned_cols=121 Identities=13% Similarity=0.029 Sum_probs=100.6
Q ss_pred HHHHhcccCchHHHHHHHHHHHhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHhhhh
Q 007519 439 ILSACSHAGLVSRGWELFNAMFDVYKIQP-GPEHYVSMINLLGRAGKIKEAEEFVLRLP-FEP-DHRIWGALLGACGFCE 515 (600)
Q Consensus 439 l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~ 515 (600)
|...+...|++++|++.++.... ..| ++..+..++..|.+.|++++|.+.+++.. ..| +...|..+...+. ..
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~---~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~-~~ 78 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTP---SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYE-LE 78 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSC---SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HT
T ss_pred hHHHHHHcChHHHHHHHHHHhcc---cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-Hc
Confidence 44566778999999999998864 456 46677889999999999999999999874 555 5677888888888 99
Q ss_pred CCHHHHHHHHHHHHhhCCCCCCcHHHHhHHHHhhCCcHHHHH-HHHHHh
Q 007519 516 GNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHK-LRMDMG 563 (600)
Q Consensus 516 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~-~~~~~~ 563 (600)
|++++|+..++++++++|+++.++..++.+|.+.|++++|.+ +++...
T Consensus 79 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al 127 (150)
T 4ga2_A 79 ENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAA 127 (150)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998776 455443
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.90 E-value=1.1e-06 Score=87.95 Aligned_cols=363 Identities=9% Similarity=0.009 Sum_probs=201.1
Q ss_pred CC-ChhHHHHHhhcCCC--CCcccHHHHHHHHHhcCCHhHHHHHHHhccc--CCchhHHHHHHHHHhcCC-hhHHHHHHc
Q 007519 117 NG-ELNEARKVFNSMPI--KNVISWNAMIAGYVECCMMGEAIVLFEEMEE--RNVVTWTSMISGYCRAGE-VEEGYCLFR 190 (600)
Q Consensus 117 ~~-~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~g~-~~~A~~~~~ 190 (600)
.| +++.|..+|+++.. |. |+++.+..+|+.... |+...|...+....+.++ .+....+|+
T Consensus 7 ~~~~i~~aR~vyer~l~~~P~--------------~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe 72 (493)
T 2uy1_A 7 MGVELSSPSAIMEHARRLYMS--------------KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEVYE 72 (493)
T ss_dssp -----CCHHHHHHHHHHHHHT--------------TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHHHH
T ss_pred cCcchHHHHHHHHHHHHHCCC--------------CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHHHH
Confidence 45 36666666666543 33 778888888888774 777777777776666553 233444444
Q ss_pred cCCC------CCcchHHHHHHHHH----hcCChhHHHHHHHHHHhhhcCCCCCC--hhhHHHHHHHHHhcCChhhHHHHh
Q 007519 191 RMPR------KNVVSWTAMIGGFA----WNGFHKESLLLFIEMKGICDNGNNCN--VQSCNSMINGYIRFGRLEEAQNLF 258 (600)
Q Consensus 191 ~~~~------~~~~~~~~li~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~ 258 (600)
.... .+...|...+..+. .+++.+.+..+|+..+.. ++. ...|..... +........+..++
T Consensus 73 ~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~-----P~~~~~~lw~~Y~~-fE~~~~~~~~~~~~ 146 (493)
T 2uy1_A 73 FTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQT-----PMGSLSELWKDFEN-FELELNKITGKKIV 146 (493)
T ss_dssp HHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTS-----CCTTHHHHHHHHHH-HHHHHCHHHHHHHH
T ss_pred HHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhC-----hhhhHHHHHHHHHH-HHHHhccccHHHHH
Confidence 4321 24455666665543 245677777788877742 221 112222211 11111122222222
Q ss_pred cccCCCCchhHHHHHHHHHhcCChHHHHHHHhhCCC----CChhhHHHHHHHHHhCC--C-----hhHHHHHHHHHHHCC
Q 007519 259 DTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPD----RDAVAWTAMISGLVQNE--L-----FVEATYLFMEMRAHG 327 (600)
Q Consensus 259 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g--~-----~~~a~~~~~~m~~~g 327 (600)
.... +.+..|..+++.+.. .+...|...+.--...+ - .+++..+|++++..
T Consensus 147 ~~~~-----------------~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~- 208 (493)
T 2uy1_A 147 GDTL-----------------PIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDS- 208 (493)
T ss_dssp HHHH-----------------HHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-
T ss_pred HHHh-----------------HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHc-
Confidence 1110 111122222221111 12334544444322211 1 24566788887765
Q ss_pred CCCChhHHHHHHHHHhcccchhhhHHHHHHHhhhcCCCchhHHHHHHHHHHhcCChHHH-HHHHhcCC------------
Q 007519 328 VPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNA-YNIFSNMV------------ 394 (600)
Q Consensus 328 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A-~~~~~~~~------------ 394 (600)
.+.+...|...+.-+.+.|+++.|..+++..... +.+...+.. |....+.++. ..+.+...
T Consensus 209 ~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~----y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~ 282 (493)
T 2uy1_A 209 FYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLY----YGLVMDEEAVYGDLKRKYSMGEAESAEKVFS 282 (493)
T ss_dssp TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHH----HHHHTTCTHHHHHHHHHTC----------CH
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHH----HHhhcchhHHHHHHHHHHHhhccchhhhhcc
Confidence 3444566666666677788888888888888777 333333322 2221111111 11111110
Q ss_pred CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcc-cCchHHHHHHHHHHHhhcCCCCCcchHH
Q 007519 395 SRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSH-AGLVSRGWELFNAMFDVYKIQPGPEHYV 473 (600)
Q Consensus 395 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~~~~p~~~~~~ 473 (600)
......|...+....+.++.+.|..+|++. .. ...+...|......-.. .++.+.|..+|+.+.+.++- ++..+.
T Consensus 283 ~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~--~~~~~~ 358 (493)
T 2uy1_A 283 KELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPD--STLLKE 358 (493)
T ss_dssp HHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTT--CHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCC--CHHHHH
Confidence 112245777777777788899999999998 32 12233444322222222 33699999999999986322 345566
Q ss_pred HHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHhhhhCCHHHHHHHHHHHHh
Q 007519 474 SMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLE 530 (600)
Q Consensus 474 ~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~ 530 (600)
..++...+.|+.+.|..+|+++. .....|...+..-. ..|+.+.+..+++++.+
T Consensus 359 ~yid~e~~~~~~~~aR~l~er~~--k~~~lw~~~~~fE~-~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 359 EFFLFLLRIGDEENARALFKRLE--KTSRMWDSMIEYEF-MVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHSC--CBHHHHHHHHHHHH-HHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHH--HHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHH
Confidence 77888889999999999999984 34667777776666 78999999999998876
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.89 E-value=8.1e-09 Score=84.83 Aligned_cols=102 Identities=12% Similarity=-0.040 Sum_probs=86.1
Q ss_pred CCCC-CcchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCCcHH
Q 007519 464 KIQP-GPEHYVSMINLLGRAGKIKEAEEFVLRLP-FEP-DHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHV 540 (600)
Q Consensus 464 ~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 540 (600)
.+.| +...+..++..+.+.|++++|.+.|+++. ..| +...|..+..++. ..|++++|+..|+++++++|+++.++.
T Consensus 30 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~-~~g~~~~Ai~~~~~al~l~P~~~~~~~ 108 (151)
T 3gyz_A 30 AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQ-IKEQFQQAADLYAVAFALGKNDYTPVF 108 (151)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHSSSCCHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HHccHHHHHHHHHHHHhhCCCCcHHHH
Confidence 4566 46778888999999999999999998875 455 5667888888888 999999999999999999999999999
Q ss_pred HHhHHHHhhCCcHHHHHHHHHHhhcC
Q 007519 541 VLCNIYAASGRHVEEHKLRMDMGLKG 566 (600)
Q Consensus 541 ~l~~~~~~~g~~~~A~~~~~~~~~~~ 566 (600)
.++.+|...|++++|...++...+..
T Consensus 109 ~lg~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 109 HTGQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 99999999999999999776665543
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.88 E-value=1.3e-08 Score=86.83 Aligned_cols=73 Identities=12% Similarity=0.008 Sum_probs=50.1
Q ss_pred HHHHHHhCC-CCC-CHHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCC--CCcHHHHhHHHHhhCCcHHHHHHHHH
Q 007519 488 AEEFVLRLP-FEP-DHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLN--APAHVVLCNIYAASGRHVEEHKLRMD 561 (600)
Q Consensus 488 A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~A~~~~~~ 561 (600)
|.+.+++.. ..| +...+..+...+. ..|++++|+..++++++.+|+. +..+..++.++...|+.++|...++.
T Consensus 93 a~~~~~~al~~~P~~~~~~~~la~~~~-~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~ 169 (176)
T 2r5s_A 93 ELKRLEQELAANPDNFELACELAVQYN-QVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRR 169 (176)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHH-HcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHH
Confidence 444444432 334 3556666666666 7888888888888888888754 44777888888888888888875543
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=2.9e-08 Score=102.23 Aligned_cols=159 Identities=13% Similarity=0.031 Sum_probs=120.1
Q ss_pred cCChHHHHHHHhcCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccCchHHHHHHH
Q 007519 380 CGVIDNAYNIFSNMV---SRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELF 456 (600)
Q Consensus 380 ~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 456 (600)
.|++++|...|++.. +.+...|..+...+...|++++|.+.+++..+.. +.+...+..+..++...|++++|.+.+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 367788888888776 4457788888999999999999999999998752 334577888888999999999999999
Q ss_pred HHHHhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHhhhh---CCHHHHHHHHHHHHh
Q 007519 457 NAMFDVYKIQP-GPEHYVSMINLLGRAGKIKEAEEFVLRLP-FEP-DHRIWGALLGACGFCE---GNAEIAEHAAKRLLE 530 (600)
Q Consensus 457 ~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~---g~~~~a~~~~~~~~~ 530 (600)
+++.+. .| +...+..++.+|.+.|++++|.+.+++.. ..| +...+..+...+. .. |+.++|+..++++++
T Consensus 81 ~~al~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~-~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 81 QQASDA---APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRR-RLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHhc---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HhhccccHHHHHHHHHHHHh
Confidence 999875 55 57788999999999999999999998864 444 4667777777887 88 999999999999999
Q ss_pred hCCCCCCcHHHHh
Q 007519 531 LDPLNAPAHVVLC 543 (600)
Q Consensus 531 ~~p~~~~~~~~l~ 543 (600)
.+|++...+..++
T Consensus 157 ~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 157 QGVGAVEPFAFLS 169 (568)
T ss_dssp HTCCCSCHHHHTT
T ss_pred cCCcccChHHHhC
Confidence 9998888777766
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.87 E-value=1.2e-07 Score=99.48 Aligned_cols=142 Identities=9% Similarity=0.007 Sum_probs=91.4
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHhcCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHH
Q 007519 366 DLILENCLISMYAKCGVIDNAYNIFSNMV---SRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSA 442 (600)
Q Consensus 366 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 442 (600)
+...+..+..++...|++++|...|+++. +.+...|..+..++...|++++|+..|++..+.. +.+...+..+..+
T Consensus 432 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~ 510 (681)
T 2pzi_A 432 SVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTF-PGELAPKLALAAT 510 (681)
T ss_dssp CSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHH
T ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 34455566666666777777777776665 4456667777777777777777777777776642 2234556666667
Q ss_pred hcccCchHHHHHHHHHHHhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhCC-CCCCH-HHHHHHHHHHh
Q 007519 443 CSHAGLVSRGWELFNAMFDVYKIQP-GPEHYVSMINLLGRAGKIKEAEEFVLRLP-FEPDH-RIWGALLGACG 512 (600)
Q Consensus 443 ~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~-~~~~~l~~~~~ 512 (600)
+...|++++ .+.|+++.+. .| +...+..++.+|.+.|++++|.+.+++.. ..|+. ..+..+..++.
T Consensus 511 ~~~~g~~~~-~~~~~~al~~---~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~ 579 (681)
T 2pzi_A 511 AELAGNTDE-HKFYQTVWST---NDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLL 579 (681)
T ss_dssp HHHHTCCCT-TCHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC
T ss_pred HHHcCChHH-HHHHHHHHHh---CCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHH
Confidence 777777777 7777777653 45 45667777777777777777777777764 55553 34444544544
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.87 E-value=1.9e-08 Score=103.64 Aligned_cols=151 Identities=17% Similarity=0.041 Sum_probs=115.2
Q ss_pred cCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCC-CcchHHHHHHHHhhcCChHHHH
Q 007519 411 HGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQP-GPEHYVSMINLLGRAGKIKEAE 489 (600)
Q Consensus 411 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~ 489 (600)
.|++++|++.+++..+.. +.+...+..+...+...|++++|.+.++++.+. .| +...+..++.+|...|++++|.
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~ 77 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL---HPGHPEAVARLGRVRWTQQRHAEAA 77 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT---STTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 478899999999988642 334677888889999999999999999999853 66 5788999999999999999999
Q ss_pred HHHHhCC-CCC-CHHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCCcHHHHhHHHHhh---CCcHHHHHHHHHHhh
Q 007519 490 EFVLRLP-FEP-DHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAAS---GRHVEEHKLRMDMGL 564 (600)
Q Consensus 490 ~~~~~~~-~~p-~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~ 564 (600)
+.+++.. ..| +...+..+...+. ..|++++|+..++++++++|+++..+..++.++... |++++|.+.++...+
T Consensus 78 ~~~~~al~~~p~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 78 VLLQQASDAAPEHPGIALWLGHALE-DAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 9998864 444 5677888888888 999999999999999999999999999999999999 999999997766655
Q ss_pred cC
Q 007519 565 KG 566 (600)
Q Consensus 565 ~~ 566 (600)
.+
T Consensus 157 ~~ 158 (568)
T 2vsy_A 157 QG 158 (568)
T ss_dssp HT
T ss_pred cC
Confidence 44
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.83 E-value=2e-08 Score=79.97 Aligned_cols=107 Identities=13% Similarity=0.008 Sum_probs=69.6
Q ss_pred HHHHHHHHhcccCchHHHHHHHHHHHhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHH
Q 007519 435 TFLGILSACSHAGLVSRGWELFNAMFDVYKIQP-GPEHYVSMINLLGRAGKIKEAEEFVLRLP-FEP-DHRIWGALLGAC 511 (600)
Q Consensus 435 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~ 511 (600)
.+......+.+.|++++|++.|+++.+. .| +...|..++.+|.+.|++++|++.+++.. ..| +...|..+..++
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~ 91 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKR---DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 3444555666667777777777766653 44 45666667777777777777777776653 333 355666666666
Q ss_pred hhhhCCHHHHHHHHHHHHhhCCCCCCcHHHHhHH
Q 007519 512 GFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNI 545 (600)
Q Consensus 512 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 545 (600)
. ..|++++|+..|+++++++|+++.++..|..+
T Consensus 92 ~-~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 92 V-AMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp H-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred H-HCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 6 77777777777777777777776666665543
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.81 E-value=1.3e-07 Score=88.66 Aligned_cols=220 Identities=11% Similarity=0.006 Sum_probs=154.1
Q ss_pred hCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhcccchhhhHHHHHHHhhhcCCCchhHHHHHHHHHHhcCChHHHHH
Q 007519 309 QNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYN 388 (600)
Q Consensus 309 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 388 (600)
..|++++|.+++++..+.. +.. .+...++++.|...+.. ....|...|++++|..
T Consensus 3 ~~~~~~eA~~~~~~a~k~~-~~~---------~~~~~~~~~~A~~~~~~---------------a~~~~~~~g~~~~A~~ 57 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYL-KTS---------FMKWKPDYDSAASEYAK---------------AAVAFKNAKQLEQAKD 57 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHH-CCC---------SSSCSCCHHHHHHHHHH---------------HHHHHHHTTCHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHc-ccc---------ccCCCCCHHHHHHHHHH---------------HHHHHHHcCCHHHHHH
Confidence 3577888999998877642 111 01114667777666654 3456778899999988
Q ss_pred HHhcCCC-----CC----hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCC---CCC--hhHHHHHHHHhcccCchHHHHH
Q 007519 389 IFSNMVS-----RD----LVSWNSMVMGFSHHGLANETLKVFESMLESGT---HPN--SVTFLGILSACSHAGLVSRGWE 454 (600)
Q Consensus 389 ~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~---~p~--~~~~~~l~~~~~~~g~~~~a~~ 454 (600)
.|.+... .+ ..+|+.+...|...|++++|+..|++..+.-. .|. ..++..+...|.. |++++|..
T Consensus 58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~ 136 (307)
T 2ifu_A 58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVH 136 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHH
Confidence 8877651 11 35788888999999999999999998765411 121 2467777788888 99999999
Q ss_pred HHHHHHhhcCCCC----CcchHHHHHHHHhhcCChHHHHHHHHhCC-C---CCC----HHHHHHHHHHHhhhhCCHHHHH
Q 007519 455 LFNAMFDVYKIQP----GPEHYVSMINLLGRAGKIKEAEEFVLRLP-F---EPD----HRIWGALLGACGFCEGNAEIAE 522 (600)
Q Consensus 455 ~~~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~---~p~----~~~~~~l~~~~~~~~g~~~~a~ 522 (600)
.++++.+...-.. ...++..++.+|.+.|++++|.+.+++.. . .++ ...+..+...+. ..|++++|+
T Consensus 137 ~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~-~~g~~~~A~ 215 (307)
T 2ifu_A 137 LYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQL-HRADYVAAQ 215 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HTTCHHHHH
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHH-HcCCHHHHH
Confidence 9999886421111 14678889999999999999999998863 1 122 124445555566 789999999
Q ss_pred HHHHHHHhhCCCCCCc-----HHHHhHHHHhhCCcHHHHH
Q 007519 523 HAAKRLLELDPLNAPA-----HVVLCNIYAASGRHVEEHK 557 (600)
Q Consensus 523 ~~~~~~~~~~p~~~~~-----~~~l~~~~~~~g~~~~A~~ 557 (600)
..+++++ +.|..... ...++.++ ..|+.+.+.+
T Consensus 216 ~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 216 KCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 9999999 99966543 33455545 5677666655
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.80 E-value=6.8e-07 Score=89.33 Aligned_cols=341 Identities=10% Similarity=0.011 Sum_probs=151.6
Q ss_pred CChhHHHHHhhhcCC--CChhhHHHHHHHHHhcCC-hHHHHHHhhcCCC------CCceeHHHHHHHHH----HCCChhH
Q 007519 56 GRLSEARRLFEEMPE--RNVVSWTAMICGLADAGR-VCEARKLFEEMPE------RNVVSWNSMVVGLI----RNGELNE 122 (600)
Q Consensus 56 ~~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~------~~~~~~~~l~~~~~----~~~~~~~ 122 (600)
|+++.+..+|++... |++..|...++...+.++ .+....+|+.... .+...|...+..+. ..++.+.
T Consensus 28 ~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~ 107 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEK 107 (493)
T ss_dssp TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHH
T ss_pred CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHH
Confidence 788888888888876 777777777776666653 3445555555432 34456666666543 2356667
Q ss_pred HHHHhhcCCCCCcccHHHHHHHHHh---cCCHhHHHHHHHhcccCCchhHHHHHHHHHhcCChhHHHHHHccCCC----C
Q 007519 123 ARKVFNSMPIKNVISWNAMIAGYVE---CCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPR----K 195 (600)
Q Consensus 123 a~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~ 195 (600)
+.++|++...........+-..|.. ......+.+++.+.. +.+..|..+++.+.. .
T Consensus 108 vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~-----------------~~y~~ar~~y~~~~~~~~~~ 170 (493)
T 2uy1_A 108 IRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTL-----------------PIFQSSFQRYQQIQPLIRGW 170 (493)
T ss_dssp HHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHh-----------------HHHHHHHHHHHHHHHHHhhc
Confidence 7777777765111122222222211 111112222221110 011111111111110 1
Q ss_pred CcchHHHHHHHHHhcC--C-----hhHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHhcCChhhHHHHhcccCCC--Cc
Q 007519 196 NVVSWTAMIGGFAWNG--F-----HKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVR--DE 266 (600)
Q Consensus 196 ~~~~~~~li~~~~~~~--~-----~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~ 266 (600)
+...|...+..-...+ - .+.+..+|++++.. .+.+...|...+..+.+.|+.+.|..++++.... +.
T Consensus 171 s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~----~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~P~~~ 246 (493)
T 2uy1_A 171 SVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDS----FYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEMSDGM 246 (493)
T ss_dssp SHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH----TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSS
T ss_pred cHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHc----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcH
Confidence 1223333332211110 0 22344555555543 2233444555555555555666665555544311 11
Q ss_pred hhHHHHHHHHHhcCChHHH-HHHHhhCC----------C--CChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChh
Q 007519 267 ISWTSMIDGYLSVGQVSNA-YYLFHNMP----------D--RDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNA 333 (600)
Q Consensus 267 ~~~~~l~~~~~~~~~~~~A-~~~~~~~~----------~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 333 (600)
..+. .|....+.++. ..+.+... . .....|...+....+.++.+.|..+|+.. +.. ..+..
T Consensus 247 ~l~~----~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~ 320 (493)
T 2uy1_A 247 FLSL----YYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPH 320 (493)
T ss_dssp HHHH----HHHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHH
T ss_pred HHHH----HHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChH
Confidence 1111 11111111111 01111100 0 01134555555555556677777777766 211 12222
Q ss_pred HHHHHHHHHhc-ccchhhhHHHHHHHhhhcCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHhcC
Q 007519 334 TFSVLFGAAGA-TANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHG 412 (600)
Q Consensus 334 ~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~ 412 (600)
.|......-.. .++.+.|..+++...+.-. .++..+...++...+.|+.+.|..+|+.+. .....|...+..-...|
T Consensus 321 v~i~~A~lE~~~~~d~~~ar~ife~al~~~~-~~~~~~~~yid~e~~~~~~~~aR~l~er~~-k~~~lw~~~~~fE~~~G 398 (493)
T 2uy1_A 321 VFIYCAFIEYYATGSRATPYNIFSSGLLKHP-DSTLLKEEFFLFLLRIGDEENARALFKRLE-KTSRMWDSMIEYEFMVG 398 (493)
T ss_dssp HHHHHHHHHHHHHCCSHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-CBHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHCC
Confidence 23211111111 2246666676666555421 123344445555566666666666666663 24555666665555566
Q ss_pred ChHHHHHHHHHHH
Q 007519 413 LANETLKVFESML 425 (600)
Q Consensus 413 ~~~~a~~~~~~m~ 425 (600)
+.+.+..++++..
T Consensus 399 ~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 399 SMELFRELVDQKM 411 (493)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 6666666665554
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.80 E-value=3.7e-08 Score=86.52 Aligned_cols=155 Identities=10% Similarity=0.024 Sum_probs=111.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCh-hHHHH----------------HHHHhcccCchHHHHHHHHHHHhhcCCC
Q 007519 404 MVMGFSHHGLANETLKVFESMLESGTHPNS-VTFLG----------------ILSACSHAGLVSRGWELFNAMFDVYKIQ 466 (600)
Q Consensus 404 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~----------------l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 466 (600)
....+...|++++|+..|++..+. .|+. ..+.. +..++...|++++|...|+++.+. .
T Consensus 10 ~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~ 84 (208)
T 3urz_A 10 KVSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK---A 84 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---C
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---C
Confidence 344555667777777777766653 3332 33444 778889999999999999999875 6
Q ss_pred C-CcchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHhhhhC--CHHHHHHHHHHHHhhCCCCCCcHHH
Q 007519 467 P-GPEHYVSMINLLGRAGKIKEAEEFVLRLP-FEP-DHRIWGALLGACGFCEG--NAEIAEHAAKRLLELDPLNAPAHVV 541 (600)
Q Consensus 467 p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~g--~~~~a~~~~~~~~~~~p~~~~~~~~ 541 (600)
| +...+..++.+|...|++++|.+.|++.. ..| +...+..+...+. ..| +.+.+...++++....| ....+..
T Consensus 85 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~a~~~ 162 (208)
T 3urz_A 85 PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYY-LTAEQEKKKLETDYKKLSSPTK-MQYARYR 162 (208)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHHHHHHHHHHHHHC---CCCH-HHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHhCCCc-hhHHHHH
Confidence 6 58889999999999999999999999975 555 4667777777765 444 44566777777654444 2345667
Q ss_pred HhHHHHhhCCcHHHHHHHHHHhhc
Q 007519 542 LCNIYAASGRHVEEHKLRMDMGLK 565 (600)
Q Consensus 542 l~~~~~~~g~~~~A~~~~~~~~~~ 565 (600)
++.++...|++++|...++...+.
T Consensus 163 ~g~~~~~~~~~~~A~~~~~~al~l 186 (208)
T 3urz_A 163 DGLSKLFTTRYEKARNSLQKVILR 186 (208)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHTTT
T ss_pred HHHHHHHccCHHHHHHHHHHHHHh
Confidence 788889999999999987665543
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.79 E-value=1.5e-07 Score=87.74 Aligned_cols=162 Identities=7% Similarity=-0.085 Sum_probs=118.3
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh-----hHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCCC----c
Q 007519 399 VSWNSMVMGFSHHGLANETLKVFESMLESGTHPNS-----VTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPG----P 469 (600)
Q Consensus 399 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~-----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~ 469 (600)
..+...+..+...|++++|.+.+.+..+....... ..+..+...+...|++++|...++++.+...-..+ .
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 34455677788899999999999888775322111 12333455667888999999999988753221112 3
Q ss_pred chHHHHHHHHhhcCChHHHHHHHHhCC----CCCC-----HHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCC--C---
Q 007519 470 EHYVSMINLLGRAGKIKEAEEFVLRLP----FEPD-----HRIWGALLGACGFCEGNAEIAEHAAKRLLELDPL--N--- 535 (600)
Q Consensus 470 ~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~-----~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~--~--- 535 (600)
.+++.++..|...|++++|.+.+++.. ..|+ ..++..+...+. ..|++++|+..+++++++.++ +
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~-~~~~y~~Al~~~~kal~~~~~~~~~~~ 234 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALY-LDSRYEESLYQVNKAIEISCRINSMAL 234 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTBCSS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHH-HHhhHHHHHHHHHHHHHHHHhcCcHHH
Confidence 478889999999999999999987753 1222 257778888888 999999999999999986542 1
Q ss_pred -CCcHHHHhHHHHhhCCcHHH-HHHHHH
Q 007519 536 -APAHVVLCNIYAASGRHVEE-HKLRMD 561 (600)
Q Consensus 536 -~~~~~~l~~~~~~~g~~~~A-~~~~~~ 561 (600)
..+|..++.+|...|++++| ...++.
T Consensus 235 ~~~~~~~lg~~y~~~g~~~~Ai~~~~~~ 262 (293)
T 2qfc_A 235 IGQLYYQRGECLRKLEYEEAEIEDAYKK 262 (293)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 46788999999999999999 664443
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.78 E-value=5.4e-08 Score=82.92 Aligned_cols=155 Identities=10% Similarity=0.006 Sum_probs=109.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHhcCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHH-hcc
Q 007519 370 ENCLISMYAKCGVIDNAYNIFSNMV---SRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSA-CSH 445 (600)
Q Consensus 370 ~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~-~~~ 445 (600)
+..+...+...|++++|...|++.. +.+...+..+..++...|++++|+..|++.... .|+.......... +..
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~ 86 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNSYKSLIAKLELHQ 86 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChHHHHHHHHHHHHh
Confidence 3455667778888888888888877 456677888888888888888888888887653 3433322221111 112
Q ss_pred cCchHHHHHHHHHHHhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhCC-CCCC---HHHHHHHHHHHhhhhCCHHH
Q 007519 446 AGLVSRGWELFNAMFDVYKIQP-GPEHYVSMINLLGRAGKIKEAEEFVLRLP-FEPD---HRIWGALLGACGFCEGNAEI 520 (600)
Q Consensus 446 ~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~---~~~~~~l~~~~~~~~g~~~~ 520 (600)
.+....|...++++.+. .| +...+..++.++...|++++|...++++. ..|+ ...+..+...+. ..|+.++
T Consensus 87 ~~~~~~a~~~~~~al~~---~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~-~~g~~~~ 162 (176)
T 2r5s_A 87 QAAESPELKRLEQELAA---NPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILS-ALGQGNA 162 (176)
T ss_dssp HHTSCHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHH-HHCSSCH
T ss_pred hcccchHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHH-HhCCCCc
Confidence 22334467788887754 56 47788888888999999999998888753 4554 446777777777 8889888
Q ss_pred HHHHHHHHHh
Q 007519 521 AEHAAKRLLE 530 (600)
Q Consensus 521 a~~~~~~~~~ 530 (600)
|+..|++++.
T Consensus 163 A~~~y~~al~ 172 (176)
T 2r5s_A 163 IASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9888888764
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.77 E-value=1.6e-08 Score=83.25 Aligned_cols=92 Identities=15% Similarity=0.079 Sum_probs=49.6
Q ss_pred cchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCCcHHHHhHHH
Q 007519 469 PEHYVSMINLLGRAGKIKEAEEFVLRLP-FEP-DHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIY 546 (600)
Q Consensus 469 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 546 (600)
...+..++..+.+.|++++|...|++.. ..| +...|..+..++. ..|++++|+..++++++++|+++.++..++.+|
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~ 99 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQ-AMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHH-HHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 4444555555555555555555555542 222 3444444444455 555555555555555555555555555555555
Q ss_pred HhhCCcHHHHHHHHH
Q 007519 547 AASGRHVEEHKLRMD 561 (600)
Q Consensus 547 ~~~g~~~~A~~~~~~ 561 (600)
...|++++|...++.
T Consensus 100 ~~~g~~~~A~~~~~~ 114 (148)
T 2vgx_A 100 LQXGELAEAESGLFL 114 (148)
T ss_dssp HHTTCHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHH
Confidence 555555555554433
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.77 E-value=3e-08 Score=78.92 Aligned_cols=101 Identities=11% Similarity=-0.019 Sum_probs=88.0
Q ss_pred CCCCC-cchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCCcHH
Q 007519 464 KIQPG-PEHYVSMINLLGRAGKIKEAEEFVLRLP-FEP-DHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHV 540 (600)
Q Consensus 464 ~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 540 (600)
.+.|+ ...+...+..|.+.|++++|++.|++.. ..| +...|..+..++. ..|++++|+..++++++++|+++.+|.
T Consensus 7 ~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~-~~~~~~~A~~~~~~al~~~p~~~~a~~ 85 (126)
T 4gco_A 7 YINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLT-KLMEFQRALDDCDTCIRLDSKFIKGYI 85 (126)
T ss_dssp CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHH-hhccHHHHHHHHHHHHHhhhhhhHHHH
Confidence 35674 6678889999999999999999999864 445 5677888888888 999999999999999999999999999
Q ss_pred HHhHHHHhhCCcHHHHHHHHHHhhc
Q 007519 541 VLCNIYAASGRHVEEHKLRMDMGLK 565 (600)
Q Consensus 541 ~l~~~~~~~g~~~~A~~~~~~~~~~ 565 (600)
.++.++...|++++|.+.++...+.
T Consensus 86 ~lg~~~~~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 86 RKAACLVAMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 9999999999999999977665543
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.76 E-value=2.3e-07 Score=82.55 Aligned_cols=185 Identities=13% Similarity=-0.058 Sum_probs=130.0
Q ss_pred hhHHHHHHHHHhcccchhhhHHHHHHHhhhcCCCc--hhHHHHHHHHHHhcCChHHHHHHHhcCC--CC-Chh---hHHH
Q 007519 332 NATFSVLFGAAGATANIDLGRQIHCVLMKTESESD--LILENCLISMYAKCGVIDNAYNIFSNMV--SR-DLV---SWNS 403 (600)
Q Consensus 332 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~-~~~---~~~~ 403 (600)
...+..+...+...|+++.|...++.+.+...... ...+..+..+|.+.|++++|...|+++. .| +.. .+..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 34555666778899999999999999888654322 3567788899999999999999999986 23 222 4455
Q ss_pred HHHHHHh------------------cCChHHHHHHHHHHHHcCCCCChh-HHHHHHHHhcccCchHHHHHHHHHHHhhcC
Q 007519 404 MVMGFSH------------------HGLANETLKVFESMLESGTHPNSV-TFLGILSACSHAGLVSRGWELFNAMFDVYK 464 (600)
Q Consensus 404 l~~~~~~------------------~~~~~~a~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 464 (600)
+..++.. .|+.++|+..|+++.+. .|+.. ....... ...+.....
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~----------l~~~~~~~~---- 147 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKR----------LVFLKDRLA---- 147 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHH----------HHHHHHHHH----
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHH----------HHHHHHHHH----
Confidence 5555543 57899999999999874 45543 2221111 001111111
Q ss_pred CCCCcchHHHHHHHHhhcCChHHHHHHHHhCC-CCCCH----HHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCCc
Q 007519 465 IQPGPEHYVSMINLLGRAGKIKEAEEFVLRLP-FEPDH----RIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPA 538 (600)
Q Consensus 465 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~----~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 538 (600)
.....++..|.+.|++++|...++++. ..|+. ..+..+..++. ..|+.++|+..++++....|++...
T Consensus 148 -----~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~-~~g~~~~A~~~~~~l~~~~~~~~~~ 220 (225)
T 2yhc_A 148 -----KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYR-QMQMNAQAEKVAKIIAANSSNTLEH 220 (225)
T ss_dssp -----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHCCSCCCCC
T ss_pred -----HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHH-HcCCcHHHHHHHHHHHhhCCCchhh
Confidence 122456788999999999999998864 33432 45667777788 9999999999999999988866543
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.74 E-value=5.6e-07 Score=83.82 Aligned_cols=160 Identities=8% Similarity=-0.065 Sum_probs=118.1
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCC-CCChh----HHHHHHHHhcccCchHHHHHHHHHHHhhcCCCCC----cchHH
Q 007519 403 SMVMGFSHHGLANETLKVFESMLESGT-HPNSV----TFLGILSACSHAGLVSRGWELFNAMFDVYKIQPG----PEHYV 473 (600)
Q Consensus 403 ~l~~~~~~~~~~~~a~~~~~~m~~~~~-~p~~~----~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~ 473 (600)
..+..+...|++++|..++++..+... .|+.. .+..+...+...|++++|...++++.+...-.++ ..+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 346678889999999999999886421 12211 2234556677788999999999999874222223 23688
Q ss_pred HHHHHHhhcCChHHHHHHHHhCC-----C---CCC-HHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCC------CCc
Q 007519 474 SMINLLGRAGKIKEAEEFVLRLP-----F---EPD-HRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLN------APA 538 (600)
Q Consensus 474 ~l~~~~~~~g~~~~A~~~~~~~~-----~---~p~-~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~ 538 (600)
.++.+|...|++++|.+.++++. . .+. ..++..+...+. ..|++++|+..+++++++.+.. +.+
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~-~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~ 238 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALY-LDSRYEESLYQVNKAIEISCRINSMALIGQL 238 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTBCTTHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHcCcHHHHHHH
Confidence 99999999999999999887763 1 111 236777888888 9999999999999999865432 467
Q ss_pred HHHHhHHHHhhCC-cHHHHHHHHHHh
Q 007519 539 HVVLCNIYAASGR-HVEEHKLRMDMG 563 (600)
Q Consensus 539 ~~~l~~~~~~~g~-~~~A~~~~~~~~ 563 (600)
|..++.+|.+.|+ +++|.+.++...
T Consensus 239 ~~~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 239 YYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 8899999999995 599998555443
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.74 E-value=4.9e-08 Score=90.22 Aligned_cols=191 Identities=9% Similarity=-0.042 Sum_probs=128.2
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhcCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHh
Q 007519 367 LILENCLISMYAKCGVIDNAYNIFSNMV---SRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSAC 443 (600)
Q Consensus 367 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 443 (600)
...+..+...+...|++++|...|++.. +.+...|..+..++...|++++|+..+++..+.. +.+...+..+..++
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 82 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQ 82 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 3455667777788888888888888765 4467788888888888999999999988887642 33456777778888
Q ss_pred cccCchHHHHHHHHHHHhhcCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHhhhhCCHHHHH
Q 007519 444 SHAGLVSRGWELFNAMFDVYKIQPG-PEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAE 522 (600)
Q Consensus 444 ~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~g~~~~a~ 522 (600)
...|++++|...|+++.+. .|+ ...+...+....+.++...... .......++......+ ..+ ..|+.++|+
T Consensus 83 ~~~g~~~~A~~~~~~al~l---~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~l-~~l--~~~~~~~A~ 155 (281)
T 2c2l_A 83 LEMESYDEAIANLQRAYSL---AKEQRLNFGDDIPSALRIAKKKRWNS-IEERRIHQESELHSYL-TRL--IAAEREREL 155 (281)
T ss_dssp HHTTCHHHHHHHHHHHHHH---HHHTTCCCCSHHHHHHHHHHHHHHHH-HHHTCCCCCCHHHHHH-HHH--HHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh---CccchhhHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHH-HHH--HHHHHHHHH
Confidence 8899999999999888764 342 2222223333222222212112 2222223333333333 333 368999999
Q ss_pred HHHHHHHhhCCCCCCcHHHHhHHHHhh-CCcHHHHHHHHHHhhc
Q 007519 523 HAAKRLLELDPLNAPAHVVLCNIYAAS-GRHVEEHKLRMDMGLK 565 (600)
Q Consensus 523 ~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~ 565 (600)
+.++++++++|++......+...+.+. +.+++|.+++....+.
T Consensus 156 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 156 EECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp TTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 999999999998777777777777666 7788899988777653
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.73 E-value=3.8e-07 Score=84.52 Aligned_cols=152 Identities=6% Similarity=-0.004 Sum_probs=68.0
Q ss_pred HHHhcccchhhhHHHHHHHhhhcCCCchhHHHHHHHHHHhcCChHHHHHHHhcCC--CCChhhHHH-HHHHHHhcCChHH
Q 007519 340 GAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMV--SRDLVSWNS-MVMGFSHHGLANE 416 (600)
Q Consensus 340 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~-l~~~~~~~~~~~~ 416 (600)
..+...|+++.|...++.+.+.... +...+..+...+...|++++|...++++. .|+...... ....+...++.++
T Consensus 125 ~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~~~~ 203 (287)
T 3qou_A 125 MQLMQESNYTDALPLLXDAWQLSNQ-NGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAADTP 203 (287)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHTSCH
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhcccCc
Confidence 3334444444444444443333222 23344455555555555555555555554 222221111 1122344444555
Q ss_pred HHHHHHHHHHcCCCCChhHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHH
Q 007519 417 TLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVL 493 (600)
Q Consensus 417 a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 493 (600)
|+..+++..... +.+...+..+...+...|++++|.+.++++.+...-..+...+..++.+|...|+.++|...++
T Consensus 204 a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r 279 (287)
T 3qou_A 204 EIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASXYR 279 (287)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred cHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHHH
Confidence 555555555431 2233444445555555555555555555555431101113445555555555555555544443
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.71 E-value=1.7e-07 Score=82.73 Aligned_cols=127 Identities=10% Similarity=-0.046 Sum_probs=104.9
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCC-CcchHHHHHH
Q 007519 399 VSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQP-GPEHYVSMIN 477 (600)
Q Consensus 399 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~ 477 (600)
..+..+...+...|++++|+..|++. +.|+...+..+..++...|++++|...++++.+. .| +...+..++.
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~~~~~~~~~~lg~ 79 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINR---DKHLAVAYFQRGM 79 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHH----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CccchHHHHHHHH
Confidence 34556777888999999999999876 4678888888889999999999999999999875 45 5778889999
Q ss_pred HHhhcCChHHHHHHHHhCC-CCCC-----------------HHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCC
Q 007519 478 LLGRAGKIKEAEEFVLRLP-FEPD-----------------HRIWGALLGACGFCEGNAEIAEHAAKRLLELDP 533 (600)
Q Consensus 478 ~~~~~g~~~~A~~~~~~~~-~~p~-----------------~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p 533 (600)
+|...|++++|.+.+++.. ..|+ ...+..+...+. ..|++++|+..+++++++.|
T Consensus 80 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~p 152 (213)
T 1hh8_A 80 LYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYA-KKEEWKKAEEQLALATSMKS 152 (213)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCC
T ss_pred HHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHH-HccCHHHHHHHHHHHHHcCc
Confidence 9999999999999998863 2222 256777777777 89999999999999999999
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.69 E-value=6.7e-07 Score=78.62 Aligned_cols=173 Identities=10% Similarity=-0.097 Sum_probs=123.7
Q ss_pred hHHHHHHHhhhcCCCchhHHHHHHHHHHhcCChHHHHHHHhcCC-CCChhhHHHHHHHHHhcC----ChHHHHHHHHHHH
Q 007519 351 GRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMV-SRDLVSWNSMVMGFSHHG----LANETLKVFESML 425 (600)
Q Consensus 351 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~~~~~~~l~~~~~~~~----~~~~a~~~~~~m~ 425 (600)
|...+....+.| ++..+..+...|...+++++|...|++.. ..++..+..+...|.. + ++++|+.+|++..
T Consensus 5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 444444444433 45555666777777778888888777765 4456677777777776 5 7889999999887
Q ss_pred HcCCCCChhHHHHHHHHhcc----cCchHHHHHHHHHHHhhcCCCCC---cchHHHHHHHHhh----cCChHHHHHHHHh
Q 007519 426 ESGTHPNSVTFLGILSACSH----AGLVSRGWELFNAMFDVYKIQPG---PEHYVSMINLLGR----AGKIKEAEEFVLR 494 (600)
Q Consensus 426 ~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~----~g~~~~A~~~~~~ 494 (600)
+.| +...+..+...|.. .+++++|.++|++..+. .|+ +..+..|..+|.. .+++++|.+++++
T Consensus 81 ~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~---~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 154 (212)
T 3rjv_A 81 EAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARD---SESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKG 154 (212)
T ss_dssp HTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSS---TTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHH
T ss_pred HCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHc---CCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 754 45566666666766 78899999999988753 342 6788889999888 7889999999988
Q ss_pred CC-CCCCHHHHHHHHHHHhhhhC-----CHHHHHHHHHHHHhhCC
Q 007519 495 LP-FEPDHRIWGALLGACGFCEG-----NAEIAEHAAKRLLELDP 533 (600)
Q Consensus 495 ~~-~~p~~~~~~~l~~~~~~~~g-----~~~~a~~~~~~~~~~~p 533 (600)
.. ..++...+..+...+....| +.++|+..++++.+...
T Consensus 155 A~~~~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 155 SSSLSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHTSCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHcCCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 74 33455566666666652223 89999999999888754
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.69 E-value=8.8e-06 Score=75.02 Aligned_cols=221 Identities=10% Similarity=0.044 Sum_probs=135.0
Q ss_pred hHHHHHHHHHHHCCCCCChhH-HHHHHHHHhccc--chhhhHHHHHHHhhhcCCCchhHHHHHHHHH----Hhc---CCh
Q 007519 314 VEATYLFMEMRAHGVPPLNAT-FSVLFGAAGATA--NIDLGRQIHCVLMKTESESDLILENCLISMY----AKC---GVI 383 (600)
Q Consensus 314 ~~a~~~~~~m~~~g~~p~~~~-~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~---~~~ 383 (600)
++|+.+++.++.. .|+..| ++.--.++...+ +++++...+..+.....+ +..+++.-...+ ... +++
T Consensus 50 ~~aL~~t~~~L~~--nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~~~~~~ 126 (306)
T 3dra_A 50 ERALHITELGINE--LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNNNDFDP 126 (306)
T ss_dssp HHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTTTCCCT
T ss_pred HHHHHHHHHHHHH--CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhccccCCH
Confidence 4677777776664 444433 333333444444 566666666655554433 222333222222 233 677
Q ss_pred HHHHHHHhcCC---CCChhhHHHHHHHHHhcCChH--HHHHHHHHHHHcCCCCChhHHHHHHHHhcccCc------hHHH
Q 007519 384 DNAYNIFSNMV---SRDLVSWNSMVMGFSHHGLAN--ETLKVFESMLESGTHPNSVTFLGILSACSHAGL------VSRG 452 (600)
Q Consensus 384 ~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~------~~~a 452 (600)
++++.+++.+. +.+..+|+.-...+...|.++ ++++.++++.+.. +-|...|+.-...+...|. ++++
T Consensus 127 ~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~~eE 205 (306)
T 3dra_A 127 YREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTIDEE 205 (306)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhHHHH
Confidence 77877777776 556677777777777777777 8888888888753 3344555544444444454 7777
Q ss_pred HHHHHHHHhhcCCCC-CcchHHHHHHHHhhcCChHH-HHHHHHhCC-C----CCCHHHHHHHHHHHhhhhCCHHHHHHHH
Q 007519 453 WELFNAMFDVYKIQP-GPEHYVSMINLLGRAGKIKE-AEEFVLRLP-F----EPDHRIWGALLGACGFCEGNAEIAEHAA 525 (600)
Q Consensus 453 ~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~-~----~p~~~~~~~l~~~~~~~~g~~~~a~~~~ 525 (600)
++.+..++.. .| |...|+.+..++.+.|+..+ +..+.+++. . ..+...+..+...+. ..|+.++|++++
T Consensus 206 l~~~~~aI~~---~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~-~~~~~~~A~~~~ 281 (306)
T 3dra_A 206 LNYVKDKIVK---CPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYT-QQKKYNESRTVY 281 (306)
T ss_dssp HHHHHHHHHH---CSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHH-HTTCHHHHHHHH
T ss_pred HHHHHHHHHh---CCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHH-ccCCHHHHHHHH
Confidence 7777777754 55 57777777777777776444 445666543 1 235566667777777 778888888888
Q ss_pred HHHHh-hCCCCCCcHHHH
Q 007519 526 KRLLE-LDPLNAPAHVVL 542 (600)
Q Consensus 526 ~~~~~-~~p~~~~~~~~l 542 (600)
+.+.+ .+|.....+...
T Consensus 282 ~~l~~~~Dpir~~yW~~~ 299 (306)
T 3dra_A 282 DLLKSKYNPIRSNFWDYQ 299 (306)
T ss_dssp HHHHHTTCGGGHHHHHHH
T ss_pred HHHHhccChHHHHHHHHH
Confidence 88776 677554444433
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.68 E-value=1.7e-07 Score=75.31 Aligned_cols=115 Identities=12% Similarity=0.037 Sum_probs=84.9
Q ss_pred hhHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHH
Q 007519 433 SVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQP-GPEHYVSMINLLGRAGKIKEAEEFVLRLP-FEP-DHRIWGALLG 509 (600)
Q Consensus 433 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~ 509 (600)
...+..+...+...|++++|...++++.+. .| +...+..++..|...|++++|.+.+++.. ..| +...+..+..
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~ 92 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKR---NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAA 92 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTT---CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 345556666667777777777777776642 34 46667777777777788888877777653 233 4567777777
Q ss_pred HHhhhhCCHHHHHHHHHHHHhhCCCCCCcHHHHhHHHHhhCC
Q 007519 510 ACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGR 551 (600)
Q Consensus 510 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 551 (600)
.+. ..|++++|+..++++++..|.++..+..++.++...|+
T Consensus 93 ~~~-~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 93 ALE-AMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHH-HTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHH-HHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 777 88999999999999999999888888888888887764
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.67 E-value=2.1e-07 Score=78.13 Aligned_cols=124 Identities=8% Similarity=-0.048 Sum_probs=91.4
Q ss_pred HHHHHHHhcccCchHHHHHHHHHHHhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHh
Q 007519 436 FLGILSACSHAGLVSRGWELFNAMFDVYKIQP-GPEHYVSMINLLGRAGKIKEAEEFVLRLP-FEP-DHRIWGALLGACG 512 (600)
Q Consensus 436 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~ 512 (600)
+..+...+...|++++|...++++.+. .| +...+..++.++...|++++|.+.+++.. ..| +...+..+...+.
T Consensus 16 ~~~~a~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 16 LKTQANDYFKAKDYENAIKFYSQAIEL---NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 444555666777777777777777654 34 46677777888888888888888877753 333 4566777777777
Q ss_pred hhhCCHHHHHHHHHHHHhhCCCCCCcHHHHhHH--HHhhCCcHHHHHHHHHHh
Q 007519 513 FCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNI--YAASGRHVEEHKLRMDMG 563 (600)
Q Consensus 513 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~ 563 (600)
..|++++|+..++++++..|+++..+..+..+ +...|++++|.+.+....
T Consensus 93 -~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 93 -ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp -HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 88999999999999999999887777544444 778899999998776554
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.67 E-value=2.1e-06 Score=79.16 Aligned_cols=210 Identities=13% Similarity=0.112 Sum_probs=162.9
Q ss_pred hhhHHHHHHHhhhcCCCchhHHHHHHHHHHhcC--ChHHHHHHHhcCC---CCChhhHHHHHHHH----Hhc---CChHH
Q 007519 349 DLGRQIHCVLMKTESESDLILENCLISMYAKCG--VIDNAYNIFSNMV---SRDLVSWNSMVMGF----SHH---GLANE 416 (600)
Q Consensus 349 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~---~~~~~~~~~l~~~~----~~~---~~~~~ 416 (600)
+.|......+...... ...+++.--.++...| ++++++..++.+. +.+..+|+.-...+ ... +++++
T Consensus 50 ~~aL~~t~~~L~~nP~-~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~ 128 (306)
T 3dra_A 50 ERALHITELGINELAS-HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYR 128 (306)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHH
T ss_pred HHHHHHHHHHHHHCcH-HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHH
Confidence 4677777777765543 3445666666777777 9999999999887 55667787766555 555 78999
Q ss_pred HHHHHHHHHHcCCCCChhHHHHHHHHhcccCchH--HHHHHHHHHHhhcCCCC-CcchHHHHHHHHhhcCC------hHH
Q 007519 417 TLKVFESMLESGTHPNSVTFLGILSACSHAGLVS--RGWELFNAMFDVYKIQP-GPEHYVSMINLLGRAGK------IKE 487 (600)
Q Consensus 417 a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~--~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~------~~~ 487 (600)
++.+++++.+.. +-+...|..-...+.+.|.++ +++++++++.+. .| +-..|+.-..++.+.|+ +++
T Consensus 129 EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~---d~~N~sAW~~R~~ll~~l~~~~~~~~~~e 204 (306)
T 3dra_A 129 EFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT---DLKNNSAWSHRFFLLFSKKHLATDNTIDE 204 (306)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHSSGGGCCHHHHHH
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhccccchhhhHHH
Confidence 999999999863 556677777666677778887 999999999975 55 67788877777777776 899
Q ss_pred HHHHHHhCC-CCC-CHHHHHHHHHHHhhhhCC-HHHHHHHHHHHHhhC---CCCCCcHHHHhHHHHhhCCcHHHHHHHHH
Q 007519 488 AEEFVLRLP-FEP-DHRIWGALLGACGFCEGN-AEIAEHAAKRLLELD---PLNAPAHVVLCNIYAASGRHVEEHKLRMD 561 (600)
Q Consensus 488 A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~g~-~~~a~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 561 (600)
+++.++++. ..| |...|+.....+. +.|+ .+....+.+++.+++ |.++.++..++.+|.+.|+.++|.++++.
T Consensus 205 El~~~~~aI~~~p~n~SaW~y~~~ll~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~ 283 (306)
T 3dra_A 205 ELNYVKDKIVKCPQNPSTWNYLLGIHE-RFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDL 283 (306)
T ss_dssp HHHHHHHHHHHCSSCHHHHHHHHHHHH-HTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCccHHHHHHHHHH-hcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Confidence 999988864 444 6778888888877 7776 444667888888776 77889999999999999999999999988
Q ss_pred Hhh
Q 007519 562 MGL 564 (600)
Q Consensus 562 ~~~ 564 (600)
+.+
T Consensus 284 l~~ 286 (306)
T 3dra_A 284 LKS 286 (306)
T ss_dssp HHH
T ss_pred HHh
Confidence 865
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.66 E-value=3.7e-07 Score=80.43 Aligned_cols=132 Identities=10% Similarity=-0.031 Sum_probs=110.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccCc
Q 007519 369 LENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGL 448 (600)
Q Consensus 369 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~ 448 (600)
.+..+...+...|++++|...|++...++...|..+...+...|++++|+..|++..... +.+...+..+..++...|+
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~ 86 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEK 86 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHccc
Confidence 345677788899999999999999998899999999999999999999999999998863 4456778888899999999
Q ss_pred hHHHHHHHHHHHhhcCC-------------CC-CcchHHHHHHHHhhcCChHHHHHHHHhCC-CCCCH
Q 007519 449 VSRGWELFNAMFDVYKI-------------QP-GPEHYVSMINLLGRAGKIKEAEEFVLRLP-FEPDH 501 (600)
Q Consensus 449 ~~~a~~~~~~~~~~~~~-------------~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~ 501 (600)
+++|.+.|+++.+...- .| ....+..++.+|...|++++|.+.+++.. ..|+.
T Consensus 87 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 87 YDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp HHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred HHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence 99999999999874211 11 12678899999999999999999998864 55653
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.65 E-value=2.3e-07 Score=74.14 Aligned_cols=116 Identities=14% Similarity=0.058 Sum_probs=88.9
Q ss_pred hHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHH
Q 007519 434 VTFLGILSACSHAGLVSRGWELFNAMFDVYKIQP-GPEHYVSMINLLGRAGKIKEAEEFVLRLP-FEP-DHRIWGALLGA 510 (600)
Q Consensus 434 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~ 510 (600)
..+..+...+...|++++|...++++... .| +...+..++..+...|++++|.+.+++.. ..| +...+..+...
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIEL---NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHH
Confidence 44555566667777777777777777654 34 46677777888888888888888877753 333 45677777777
Q ss_pred HhhhhCCHHHHHHHHHHHHhhCCCCCCcHHHHhHHHHhhCCcH
Q 007519 511 CGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHV 553 (600)
Q Consensus 511 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 553 (600)
+. ..|++++|+..++++++..|+++..+..++.++...|+++
T Consensus 90 ~~-~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 131 (131)
T 2vyi_A 90 LS-SLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREAP 131 (131)
T ss_dssp HH-HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTCC
T ss_pred HH-HhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcCC
Confidence 77 8999999999999999999988889999999998888763
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.64 E-value=3.1e-06 Score=78.70 Aligned_cols=158 Identities=11% Similarity=-0.008 Sum_probs=119.1
Q ss_pred HHHHHHhcCChHHHHHHHhcCCC-----CC----hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh-----hHHHH
Q 007519 373 LISMYAKCGVIDNAYNIFSNMVS-----RD----LVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNS-----VTFLG 438 (600)
Q Consensus 373 l~~~~~~~~~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~-----~~~~~ 438 (600)
.+..+...|++++|...+++... ++ ...+..+...+...|++++|+..|++..+.....+. .+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 46678889999999999988652 11 113334666677788999999999999884323222 26888
Q ss_pred HHHHhcccCchHHHHHHHHHHHhhcC----CCC-CcchHHHHHHHHhhcCChHHHHHHHHhCC-------CCCC-HHHHH
Q 007519 439 ILSACSHAGLVSRGWELFNAMFDVYK----IQP-GPEHYVSMINLLGRAGKIKEAEEFVLRLP-------FEPD-HRIWG 505 (600)
Q Consensus 439 l~~~~~~~g~~~~a~~~~~~~~~~~~----~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~p~-~~~~~ 505 (600)
+..+|...|++++|...++++.+... ..+ ...++..++..|.+.|++++|.+.+++.. ..+. ...+.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 88999999999999999999885321 112 24578899999999999999999987753 2222 55677
Q ss_pred HHHHHHhhhhC-CHHHHHHHHHHHHhh
Q 007519 506 ALLGACGFCEG-NAEIAEHAAKRLLEL 531 (600)
Q Consensus 506 ~l~~~~~~~~g-~~~~a~~~~~~~~~~ 531 (600)
.+..++. ..| ++++|+..+++++++
T Consensus 241 ~lg~~~~-~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 241 QRGECLR-KLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHH-HTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HhCCcHHHHHHHHHHHHHH
Confidence 7777887 889 579999999999873
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.63 E-value=1.6e-07 Score=76.68 Aligned_cols=91 Identities=15% Similarity=-0.018 Sum_probs=46.2
Q ss_pred chHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCCcHHHHhHHHH
Q 007519 470 EHYVSMINLLGRAGKIKEAEEFVLRLP-FEP-DHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYA 547 (600)
Q Consensus 470 ~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 547 (600)
..+..++..+.+.|++++|.+.|++.. ..| +...|..+..++. ..|++++|+..++++++++|+++..+..++.++.
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQ-SLGLYEQALQSYSYGALMDINEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHH-HHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 334444555555555555555555442 222 3334444444444 5555555555555555555555555555555555
Q ss_pred hhCCcHHHHHHHHH
Q 007519 548 ASGRHVEEHKLRMD 561 (600)
Q Consensus 548 ~~g~~~~A~~~~~~ 561 (600)
..|++++|.+.++.
T Consensus 98 ~~g~~~~A~~~~~~ 111 (142)
T 2xcb_A 98 QLGDLDGAESGFYS 111 (142)
T ss_dssp HTTCHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHH
Confidence 55555555554443
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.62 E-value=3.8e-07 Score=72.13 Aligned_cols=113 Identities=23% Similarity=0.270 Sum_probs=82.3
Q ss_pred hHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHH
Q 007519 434 VTFLGILSACSHAGLVSRGWELFNAMFDVYKIQP-GPEHYVSMINLLGRAGKIKEAEEFVLRLP--FEPDHRIWGALLGA 510 (600)
Q Consensus 434 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~ 510 (600)
..+..+...+...|++++|.+.++++.+. .| +...+..++..+.+.|++++|...++++. .+.+...+..+...
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 86 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALEL---DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH---CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHH
Confidence 44555666666777777777777777654 23 45567777777777888888877777653 23355667777777
Q ss_pred HhhhhCCHHHHHHHHHHHHhhCCCCCCcHHHHhHHHHhhC
Q 007519 511 CGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASG 550 (600)
Q Consensus 511 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 550 (600)
+. ..|++++|+..++++++..|+++..+..++.++...|
T Consensus 87 ~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 87 YY-KQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HH-HhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 77 8899999999999999999988888888888776654
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.62 E-value=2.1e-07 Score=88.47 Aligned_cols=93 Identities=16% Similarity=0.093 Sum_probs=79.6
Q ss_pred cchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCCcHHHHhHHH
Q 007519 469 PEHYVSMINLLGRAGKIKEAEEFVLRLP-FEP-DHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIY 546 (600)
Q Consensus 469 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 546 (600)
...|..++.+|.+.|++++|.+.+++.. ..| +...+..+..++. ..|++++|+..++++++++|+++.++..++.++
T Consensus 196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~-~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~ 274 (336)
T 1p5q_A 196 LASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHL-AVNDFELARADFQKVLQLYPNNKAAKTQLAVCQ 274 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 3578888999999999999999998864 344 5677888888888 999999999999999999999999999999999
Q ss_pred HhhCCcHHHHH-HHHHH
Q 007519 547 AASGRHVEEHK-LRMDM 562 (600)
Q Consensus 547 ~~~g~~~~A~~-~~~~~ 562 (600)
...|++++|.+ +++.|
T Consensus 275 ~~~~~~~~a~~~~~~~~ 291 (336)
T 1p5q_A 275 QRIRRQLAREKKLYANM 291 (336)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999955 55544
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.62 E-value=1.2e-07 Score=77.83 Aligned_cols=96 Identities=5% Similarity=-0.095 Sum_probs=61.1
Q ss_pred HHHHHHHHhcccCchHHHHHHHHHHHhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHH
Q 007519 435 TFLGILSACSHAGLVSRGWELFNAMFDVYKIQP-GPEHYVSMINLLGRAGKIKEAEEFVLRLP-FEP-DHRIWGALLGAC 511 (600)
Q Consensus 435 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~ 511 (600)
.+..+...+.+.|++++|...|+++... .| ++..|..++.+|...|++++|.+.|++.. ..| ++..|..+..++
T Consensus 38 ~~~~lg~~~~~~g~~~eA~~~~~~al~~---~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~ 114 (151)
T 3gyz_A 38 DIYSYAYDFYNKGRIEEAEVFFRFLCIY---DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQ 114 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHH
Confidence 3444555566666666666666666643 45 45666666777777777777777666653 333 344556666666
Q ss_pred hhhhCCHHHHHHHHHHHHhhCCC
Q 007519 512 GFCEGNAEIAEHAAKRLLELDPL 534 (600)
Q Consensus 512 ~~~~g~~~~a~~~~~~~~~~~p~ 534 (600)
. ..|++++|+..|++++++.|+
T Consensus 115 ~-~lg~~~eA~~~~~~al~l~~~ 136 (151)
T 3gyz_A 115 L-RLKAPLKAKECFELVIQHSND 136 (151)
T ss_dssp H-HTTCHHHHHHHHHHHHHHCCC
T ss_pred H-HcCCHHHHHHHHHHHHHhCCC
Confidence 6 777777777777777777774
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.61 E-value=3.6e-07 Score=70.69 Aligned_cols=99 Identities=16% Similarity=0.081 Sum_probs=81.5
Q ss_pred CcchHHHHHHHHhhcCChHHHHHHHHhCC-C-CCCHHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCC--CCCcHHHHh
Q 007519 468 GPEHYVSMINLLGRAGKIKEAEEFVLRLP-F-EPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPL--NAPAHVVLC 543 (600)
Q Consensus 468 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~p~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~ 543 (600)
+...+..++..+...|++++|...+++.. . +.+...+..+...+. ..|++++|+..++++++..|+ ++..+..++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~ 83 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALY-NLERYEEAVDCYNYVINVIEDEYNKDVWAAKA 83 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHH-HccCHHHHHHHHHHHHHhCcccchHHHHHHHH
Confidence 46678888888889999999998888764 3 335667777777777 889999999999999999998 888899999
Q ss_pred HHHHhh-CCcHHHHHHHHHHhhcCC
Q 007519 544 NIYAAS-GRHVEEHKLRMDMGLKGV 567 (600)
Q Consensus 544 ~~~~~~-g~~~~A~~~~~~~~~~~~ 567 (600)
.++... |++++|.+.++...+...
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp HHHTTCSSCSHHHHHHHHHHGGGCC
T ss_pred HHHHHHhCCHHHHHHHHHHHhhccc
Confidence 999999 999999998777665543
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.59 E-value=1.2e-07 Score=80.74 Aligned_cols=125 Identities=10% Similarity=0.112 Sum_probs=86.5
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCC-CcchHHHHHHH-HhhcCCh
Q 007519 408 FSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQP-GPEHYVSMINL-LGRAGKI 485 (600)
Q Consensus 408 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~-~~~~g~~ 485 (600)
+...|++++|+..+++..+.. +.+...+..+..++...|++++|...|+++.+. .| +...+..++.+ +...|++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~la~~l~~~~~~~ 95 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQL---RGENAELYAALATVLYYQASQH 95 (177)
T ss_dssp CC-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HCSCHHHHHHHHHHHHHHTTTC
T ss_pred hhhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHhcCCc
Confidence 445677888888888877652 345566777777888888888888888887764 34 46667777777 6677887
Q ss_pred --HHHHHHHHhCC-CCC-CHHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCC
Q 007519 486 --KEAEEFVLRLP-FEP-DHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAP 537 (600)
Q Consensus 486 --~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 537 (600)
++|.+.+++.. ..| +...+..+...+. ..|++++|+..++++++..|+++.
T Consensus 96 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~p~~~~ 150 (177)
T 2e2e_A 96 MTAQTRAMIDKALALDSNEITALMLLASDAF-MQANYAQAIELWQKVMDLNSPRIN 150 (177)
T ss_dssp CCHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHTCCTTSC
T ss_pred chHHHHHHHHHHHHhCCCcHHHHHHHHHHHH-HcccHHHHHHHHHHHHhhCCCCcc
Confidence 88888887764 334 3556666666677 788888888888888888886544
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.58 E-value=8.3e-08 Score=78.86 Aligned_cols=103 Identities=11% Similarity=-0.024 Sum_probs=78.9
Q ss_pred hHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHH
Q 007519 434 VTFLGILSACSHAGLVSRGWELFNAMFDVYKIQP-GPEHYVSMINLLGRAGKIKEAEEFVLRLP-FEP-DHRIWGALLGA 510 (600)
Q Consensus 434 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~ 510 (600)
..+..+...+...|++++|...|+++... .| +...|..++.+|...|++++|.+.+++.. ..| +...+..+..+
T Consensus 22 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~ 98 (148)
T 2vgx_A 22 EQLYSLAFNQYQSGXYEDAHXVFQALCVL---DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAEC 98 (148)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHc---CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHH
Confidence 44555667777888888888888888764 45 57778888888888888888888888764 344 45566777777
Q ss_pred HhhhhCCHHHHHHHHHHHHhhCCCCCCcHH
Q 007519 511 CGFCEGNAEIAEHAAKRLLELDPLNAPAHV 540 (600)
Q Consensus 511 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 540 (600)
+. ..|++++|+..+++++++.|+++....
T Consensus 99 ~~-~~g~~~~A~~~~~~al~~~p~~~~~~~ 127 (148)
T 2vgx_A 99 LL-QXGELAEAESGLFLAQELIANXPEFXE 127 (148)
T ss_dssp HH-HTTCHHHHHHHHHHHHHHHTTCGGGHH
T ss_pred HH-HcCCHHHHHHHHHHHHHHCcCCCcchH
Confidence 77 899999999999999999887665543
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.57 E-value=2.6e-07 Score=86.74 Aligned_cols=197 Identities=8% Similarity=-0.026 Sum_probs=146.5
Q ss_pred cccchhhhHHHHHHHhhhcCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHH
Q 007519 344 ATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFES 423 (600)
Q Consensus 344 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 423 (600)
..|++++|..+++...+.... + .+...++++.|...|.+ ....|...|++++|...|.+
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~-~---------~~~~~~~~~~A~~~~~~-----------a~~~~~~~g~~~~A~~~~~~ 61 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKT-S---------FMKWKPDYDSAASEYAK-----------AAVAFKNAKQLEQAKDAYLQ 61 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCC-C---------SSSCSCCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHccc-c---------ccCCCCCHHHHHHHHHH-----------HHHHHHHcCCHHHHHHHHHH
Confidence 356788888888877664322 1 01115788888877654 46778899999999999998
Q ss_pred HHHcCCC---C-C-hhHHHHHHHHhcccCchHHHHHHHHHHHhhcCC--CC--CcchHHHHHHHHhhcCChHHHHHHHHh
Q 007519 424 MLESGTH---P-N-SVTFLGILSACSHAGLVSRGWELFNAMFDVYKI--QP--GPEHYVSMINLLGRAGKIKEAEEFVLR 494 (600)
Q Consensus 424 m~~~~~~---p-~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~ 494 (600)
..+.... + . ..+|..+..+|...|++++|...++++.+.+.- .| ...++..++.+|.. |++++|++.+++
T Consensus 62 al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~ 140 (307)
T 2ifu_A 62 EAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQ 140 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHH
Confidence 7764211 1 1 246778888899999999999999988764211 11 14578889999988 999999999988
Q ss_pred CC-CC---CC----HHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCC------cHHHHhHHHHhhCCcHHHHHHHH
Q 007519 495 LP-FE---PD----HRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAP------AHVVLCNIYAASGRHVEEHKLRM 560 (600)
Q Consensus 495 ~~-~~---p~----~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~------~~~~l~~~~~~~g~~~~A~~~~~ 560 (600)
.. .. .+ ..++..+...+. ..|++++|+..+++++++.|++.. .+..++.++...|++++|...++
T Consensus 141 Al~~~~~~~~~~~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~ 219 (307)
T 2ifu_A 141 AAAVFENEERLRQAAELIGKASRLLV-RQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVR 219 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhCCChhHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 63 11 11 356777788888 999999999999999998775442 56677788888999999999776
Q ss_pred HHh
Q 007519 561 DMG 563 (600)
Q Consensus 561 ~~~ 563 (600)
...
T Consensus 220 ~al 222 (307)
T 2ifu_A 220 ESY 222 (307)
T ss_dssp HHT
T ss_pred HHh
Confidence 655
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.53 E-value=3.9e-07 Score=72.52 Aligned_cols=88 Identities=13% Similarity=-0.098 Sum_probs=43.1
Q ss_pred HHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCCcHHHHhHHHHhh
Q 007519 472 YVSMINLLGRAGKIKEAEEFVLRLP-FEP-DHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAAS 549 (600)
Q Consensus 472 ~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 549 (600)
+..++..+.+.|++++|.+.|++.. ..| +...|..+..++. ..|++++|+..++++++++|+++..+..++.++...
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 85 (126)
T 3upv_A 7 ARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALA-KLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAV 85 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH-HhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Confidence 3444444455555555555554432 222 3334444444444 555555555555555555555555555555555555
Q ss_pred CCcHHHHHHHH
Q 007519 550 GRHVEEHKLRM 560 (600)
Q Consensus 550 g~~~~A~~~~~ 560 (600)
|++++|...++
T Consensus 86 ~~~~~A~~~~~ 96 (126)
T 3upv_A 86 KEYASALETLD 96 (126)
T ss_dssp TCHHHHHHHHH
T ss_pred hCHHHHHHHHH
Confidence 55555555443
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.53 E-value=3.6e-07 Score=82.25 Aligned_cols=125 Identities=12% Similarity=-0.060 Sum_probs=55.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCCC--cchHHHHHHHHhh
Q 007519 404 MVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPG--PEHYVSMINLLGR 481 (600)
Q Consensus 404 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~ 481 (600)
+...+...|++++|.++|+.+... .|+......+...+.+.|++++|+..|+..... . .|. ...+..++.++.+
T Consensus 108 yA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~-~-d~~~~~~a~~~LG~al~~ 183 (282)
T 4f3v_A 108 FAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW-P-DKFLAGAAGVAHGVAAAN 183 (282)
T ss_dssp HHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC-S-CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc-C-CcccHHHHHHHHHHHHHH
Confidence 334445555555555555554432 233322223333444555555555555433221 0 110 1234445555555
Q ss_pred cCChHHHHHHHHhCCCC---CC-H-HHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCC
Q 007519 482 AGKIKEAEEFVLRLPFE---PD-H-RIWGALLGACGFCEGNAEIAEHAAKRLLELDP 533 (600)
Q Consensus 482 ~g~~~~A~~~~~~~~~~---p~-~-~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p 533 (600)
.|++++|++.|++.... |. . ........++. ..|+.++|...|+++.+.+|
T Consensus 184 LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~-~lGr~deA~~~l~~a~a~~P 239 (282)
T 4f3v_A 184 LALFTEAERRLTEANDSPAGEACARAIAWYLAMARR-SQGNESAAVALLEWLQTTHP 239 (282)
T ss_dssp TTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHSC
T ss_pred CCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhcCC
Confidence 55555555555544211 22 1 12333333333 55555555555555555555
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.51 E-value=8.5e-07 Score=75.46 Aligned_cols=117 Identities=9% Similarity=0.019 Sum_probs=62.5
Q ss_pred cccCchHHHHHHHHHHHhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHH-HhhhhCCH-
Q 007519 444 SHAGLVSRGWELFNAMFDVYKIQP-GPEHYVSMINLLGRAGKIKEAEEFVLRLP-FEP-DHRIWGALLGA-CGFCEGNA- 518 (600)
Q Consensus 444 ~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~-~~~~~g~~- 518 (600)
...|++++|...+++..+. .| +...+..++..|...|++++|.+.+++.. ..| +...+..+... +. ..|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~-~~~~~~ 96 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRA---NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYY-QASQHM 96 (177)
T ss_dssp C-----CCCCHHHHHHHHH---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHH-HTTTCC
T ss_pred hhccCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-hcCCcc
Confidence 3455566666666655543 23 34555566666666666666666665543 222 33444444444 33 55555
Q ss_pred -HHHHHHHHHHHhhCCCCCCcHHHHhHHHHhhCCcHHHHHHHHHHhh
Q 007519 519 -EIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGL 564 (600)
Q Consensus 519 -~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 564 (600)
++|+..++++++..|+++..+..++.++...|++++|...++...+
T Consensus 97 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 143 (177)
T 2e2e_A 97 TAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMD 143 (177)
T ss_dssp CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 6666666666666665566666666666666666666665544443
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.50 E-value=3.6e-07 Score=71.96 Aligned_cols=94 Identities=16% Similarity=0.034 Sum_probs=77.3
Q ss_pred chHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCCcHHHHhHHHH
Q 007519 470 EHYVSMINLLGRAGKIKEAEEFVLRLP-FEP-DHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYA 547 (600)
Q Consensus 470 ~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 547 (600)
..+..++..+.+.|++++|...+++.. ..| +...|..+..++. ..|++++|+..++++++++|+++.++..++.++.
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~-~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQA-ENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT 96 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 345667788889999999999988864 445 5667777777777 8899999999999999999988999999999999
Q ss_pred hhCCcHHHHHHHHHHhh
Q 007519 548 ASGRHVEEHKLRMDMGL 564 (600)
Q Consensus 548 ~~g~~~~A~~~~~~~~~ 564 (600)
..|++++|...++...+
T Consensus 97 ~~g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 97 NEHNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 99999999997766544
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.47 E-value=1.4e-06 Score=81.04 Aligned_cols=162 Identities=11% Similarity=-0.042 Sum_probs=118.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhcCC---CCCh------hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC---CC--hh
Q 007519 369 LENCLISMYAKCGVIDNAYNIFSNMV---SRDL------VSWNSMVMGFSHHGLANETLKVFESMLESGTH---PN--SV 434 (600)
Q Consensus 369 ~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~---p~--~~ 434 (600)
.+...+..+...|++++|.+.+.+.. +... ..+..+...+...|++++|+..+++..+.... +. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 34456677888999999998887554 1111 22344566677889999999999998764211 11 34
Q ss_pred HHHHHHHHhcccCchHHHHHHHHHHHhhcCCCCC-----cchHHHHHHHHhhcCChHHHHHHHHhCC-------CCC-CH
Q 007519 435 TFLGILSACSHAGLVSRGWELFNAMFDVYKIQPG-----PEHYVSMINLLGRAGKIKEAEEFVLRLP-------FEP-DH 501 (600)
Q Consensus 435 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~p-~~ 501 (600)
+++.+...|...|++++|...++++.+.....|+ ..++..++..|.+.|++++|.+.+++.. ... -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 7788888999999999999999998843222232 2588899999999999999999998753 111 15
Q ss_pred HHHHHHHHHHhhhhCCHHHH-HHHHHHHHhh
Q 007519 502 RIWGALLGACGFCEGNAEIA-EHAAKRLLEL 531 (600)
Q Consensus 502 ~~~~~l~~~~~~~~g~~~~a-~~~~~~~~~~ 531 (600)
.++..+...+. ..|+.++| ...+++++.+
T Consensus 237 ~~~~~lg~~y~-~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 237 QLYYQRGECLR-KLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHH-HTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HcCCcHHHHHHHHHHHHHH
Confidence 56777777888 99999999 7889988763
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.46 E-value=7e-07 Score=72.77 Aligned_cols=103 Identities=11% Similarity=-0.002 Sum_probs=70.5
Q ss_pred HHHHHHHhcccCchHHHHHHHHHHHhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHh
Q 007519 436 FLGILSACSHAGLVSRGWELFNAMFDVYKIQP-GPEHYVSMINLLGRAGKIKEAEEFVLRLP-FEP-DHRIWGALLGACG 512 (600)
Q Consensus 436 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~ 512 (600)
+..+...+...|++++|...|+++... .| +...|..++.+|.+.|++++|.+.+++.. ..| +...+..+..++.
T Consensus 21 ~~~~a~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 21 LYALGFNQYQAGKWDDAQKIFQALCML---DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 344455666677777777777777654 44 46667777777777777777777777753 334 3445566666666
Q ss_pred hhhCCHHHHHHHHHHHHhhCCCCCCcHHHH
Q 007519 513 FCEGNAEIAEHAAKRLLELDPLNAPAHVVL 542 (600)
Q Consensus 513 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 542 (600)
..|++++|+..+++++++.|+++......
T Consensus 98 -~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 126 (142)
T 2xcb_A 98 -QLGDLDGAESGFYSARALAAAQPAHEALA 126 (142)
T ss_dssp -HTTCHHHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred -HcCCHHHHHHHHHHHHHhCCCCcchHHHH
Confidence 88888888888888888888666554443
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.46 E-value=7.8e-07 Score=77.56 Aligned_cols=153 Identities=11% Similarity=0.004 Sum_probs=83.9
Q ss_pred hcCChHHHHH---HHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCC-ChhHHHHHHHHhcccCchH
Q 007519 379 KCGVIDNAYN---IFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLES----GTHP-NSVTFLGILSACSHAGLVS 450 (600)
Q Consensus 379 ~~~~~~~A~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~p-~~~~~~~l~~~~~~~g~~~ 450 (600)
..|++++|.+ .+..........+..+...+...|++++|...+++.... +..| ....+..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 3466666666 443322334456666666677777777777777666542 1111 1234555556666777777
Q ss_pred HHHHHHHHHHhhcCCCC-C----cchHHHHHHHHhhcCChHHHHHHHHhCC----CCCCH----HHHHHHHHHHhhhhCC
Q 007519 451 RGWELFNAMFDVYKIQP-G----PEHYVSMINLLGRAGKIKEAEEFVLRLP----FEPDH----RIWGALLGACGFCEGN 517 (600)
Q Consensus 451 ~a~~~~~~~~~~~~~~p-~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~~----~~~~~l~~~~~~~~g~ 517 (600)
+|.+.+++..+...-.+ + ...+..++..+...|++++|.+.+++.. ..++. .++..+...+. ..|+
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~-~~g~ 162 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQ-QEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HTTC
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHH-HCcC
Confidence 77777766654321112 1 3345666667777777777776665542 11111 22344445555 6677
Q ss_pred HHHHHHHHHHHHhhC
Q 007519 518 AEIAEHAAKRLLELD 532 (600)
Q Consensus 518 ~~~a~~~~~~~~~~~ 532 (600)
+++|+..+++++++.
T Consensus 163 ~~~A~~~~~~al~~~ 177 (203)
T 3gw4_A 163 LLEAQQHWLRARDIF 177 (203)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 777777777766643
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.46 E-value=1.3e-06 Score=73.19 Aligned_cols=107 Identities=14% Similarity=0.076 Sum_probs=84.3
Q ss_pred hHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHH
Q 007519 434 VTFLGILSACSHAGLVSRGWELFNAMFDVYKIQP-GPEHYVSMINLLGRAGKIKEAEEFVLRLP-FEP-DHRIWGALLGA 510 (600)
Q Consensus 434 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~ 510 (600)
..+..+...+...|++++|.+.|+++.+. .| +...+..++.+|.+.|++++|++.+++.. ..| +...|..+..+
T Consensus 12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 12 DKLKSEGNAAMARKEYSKAIDLYTQALSI---APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 45566667777888888888888888764 45 57778888888888899999888888764 444 46677778888
Q ss_pred HhhhhCCHHHHHHHHHHHHhhCCCCCCcHHHHhH
Q 007519 511 CGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCN 544 (600)
Q Consensus 511 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 544 (600)
+. ..|++++|+..++++++++|+++..+...+.
T Consensus 89 ~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l 121 (164)
T 3sz7_A 89 RF-DMADYKGAKEAYEKGIEAEGNGGSDAMKRGL 121 (164)
T ss_dssp HH-HTTCHHHHHHHHHHHHHHHSSSCCHHHHHHH
T ss_pred HH-HccCHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 88 9999999999999999999988886655543
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.45 E-value=1.9e-07 Score=86.23 Aligned_cols=90 Identities=13% Similarity=-0.040 Sum_probs=46.6
Q ss_pred ccchhHHHHHHHhcCChhhHHHHhccCCC--C-CcchHHHHHHHHHcCCChhHHHHHhhhcCC---CChhhHHHHHHHHH
Q 007519 11 VVHLTSSITKYSKRGFIDEAKALFQLMPQ--R-NVVSYNAMLSGFLQNGRLSEARRLFEEMPE---RNVVSWTAMICGLA 84 (600)
Q Consensus 11 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~ 84 (600)
...+..+...+.+.|++++|+..|+...+ | +...|..+..+|.+.|++++|...++++.+ .+...+..++.+|.
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQL 83 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 33444555555555555555555555432 2 344455555555555555555555555544 22344555555555
Q ss_pred hcCChHHHHHHhhcCC
Q 007519 85 DAGRVCEARKLFEEMP 100 (600)
Q Consensus 85 ~~g~~~~A~~~~~~~~ 100 (600)
..|++++|+..|++..
T Consensus 84 ~~g~~~~A~~~~~~al 99 (281)
T 2c2l_A 84 EMESYDEAIANLQRAY 99 (281)
T ss_dssp HTTCHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHH
Confidence 5555555555555443
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.43 E-value=1.9e-06 Score=67.23 Aligned_cols=106 Identities=13% Similarity=0.089 Sum_probs=60.5
Q ss_pred HHHHHHHhcccCchHHHHHHHHHHHhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHh
Q 007519 436 FLGILSACSHAGLVSRGWELFNAMFDVYKIQP-GPEHYVSMINLLGRAGKIKEAEEFVLRLP-FEP-DHRIWGALLGACG 512 (600)
Q Consensus 436 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~ 512 (600)
+..+...+...|++++|...++++... .| +...+..++..+...|++++|.+.+++.. ..| +...+..+...+.
T Consensus 7 ~~~~~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 7 LKEKGNKALSVGNIDDALQCYSEAIKL---DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 344444555555666666666555543 23 34455556666666666666666665542 223 3445555555566
Q ss_pred hhhCCHHHHHHHHHHHHhhCCCCCCcHHHHhHH
Q 007519 513 FCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNI 545 (600)
Q Consensus 513 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 545 (600)
..|++++|+..++++++..|+++..+..++.+
T Consensus 84 -~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 115 (118)
T 1elw_A 84 -FLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 115 (118)
T ss_dssp -HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred -HHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 66777777777777777777665555555443
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.42 E-value=1e-06 Score=69.98 Aligned_cols=106 Identities=10% Similarity=-0.080 Sum_probs=67.1
Q ss_pred HHHHHHHhcccCchHHHHHHHHHHHhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHh
Q 007519 436 FLGILSACSHAGLVSRGWELFNAMFDVYKIQP-GPEHYVSMINLLGRAGKIKEAEEFVLRLP-FEP-DHRIWGALLGACG 512 (600)
Q Consensus 436 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~ 512 (600)
+......+...|++++|...|+++.+. .| +...+..++.+|.+.|++++|.+.+++.. ..| +...+..+..++.
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 7 ARLEGKEYFTKSDWPNAVKAYTEMIKR---APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 444455556666666666666666653 34 45666667777777777777777766653 333 3455666666666
Q ss_pred hhhCCHHHHHHHHHHHHhhC------CCCCCcHHHHhHH
Q 007519 513 FCEGNAEIAEHAAKRLLELD------PLNAPAHVVLCNI 545 (600)
Q Consensus 513 ~~~g~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~ 545 (600)
..|++++|+..++++++++ |+++.+...+..+
T Consensus 84 -~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~ 121 (126)
T 3upv_A 84 -AVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA 121 (126)
T ss_dssp -HTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHH
T ss_pred -HHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHH
Confidence 7778888888888877777 6555555555443
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=98.42 E-value=1.4e-07 Score=88.71 Aligned_cols=442 Identities=10% Similarity=0.101 Sum_probs=263.2
Q ss_pred CCccchhHHHHHHHhcCChhhHHHHhccCCCCCcchHHHHHHHHHcCCChhHHHHHhhhcCC--CChhhHHHHHHHHHhc
Q 007519 9 SLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPE--RNVVSWTAMICGLADA 86 (600)
Q Consensus 9 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~ 86 (600)
..+..|..|..+....|.+.+|++.|-+. .|+..|..++.+..+.|.+++-.+.+....+ .++..=+.|+-+|++.
T Consensus 52 n~p~VWs~LgkAqL~~~~v~eAIdsyIkA--~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~IDteLi~ayAk~ 129 (624)
T 3lvg_A 52 NEPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKT 129 (624)
T ss_dssp CCCCCSSSHHHHTTTSSSCTTTTTSSCCC--SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTTTTHHHHHHHHTS
T ss_pred CCccHHHHHHHHHHccCchHHHHHHHHhC--CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccHHHHHHHHHhh
Confidence 44567777888888878777777765544 4555577777777778888887777776665 4555666777788887
Q ss_pred CChHHHHHHhhcCCCCCceeHHHHHHHHHHCCChhHHHHHhhcCCCCCcccHHHHHHHHHhcCCHhHHHHHHHhcccCCc
Q 007519 87 GRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNV 166 (600)
Q Consensus 87 g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 166 (600)
++..+-.+++. .||..-...+..-|...|.++.|.-+|..+. .|.-|..++...|++..|.+.-++ -.++
T Consensus 130 ~rL~elEefl~---~~N~A~iq~VGDrcf~e~lYeAAKilys~is-----N~akLAstLV~L~~yq~AVdaArK--Ans~ 199 (624)
T 3lvg_A 130 NRLAELEEFIN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS-----NFGRLASTLVHLGEYQAAVDGARK--ANST 199 (624)
T ss_dssp CSSSTTTSTTS---CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSC-----CCTTTSSSSSSCSGGGSSTTTTTT--CCSS
T ss_pred CcHHHHHHHHc---CCCcccHHHHHHHHHHccCHHHHHHHHHhCc-----cHHHHHHHHHHHHHHHHHHHHHHh--cCCh
Confidence 77555333222 2666667777777778888887777777553 334445556666776666544332 2577
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHccC-CCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhhhcCCCCCChhhHHHHHHHH
Q 007519 167 VTWTSMISGYCRAGEVEEGYCLFRRM-PRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGY 245 (600)
Q Consensus 167 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 245 (600)
.||..+-.+|...+.+.-|.-.--.+ ..+| -...++..|-..|.+++-+.+++..... -......|+-|.-.|
T Consensus 200 ktWKeV~~ACvd~~EfrLAqicGLniIvhad--eL~elv~~YE~~G~f~ELIsLlEaglgl----ErAHmGmFTELaILY 273 (624)
T 3lvg_A 200 RTWKEVCFACVDGKEFRLAQMCGLHIVVHAD--ELEELINYYQDRGYFEELITMLEAALGL----ERAHMGMFTELAILY 273 (624)
T ss_dssp CSHHHHTHHHHHSCTTTTTTHHHHHHHCCSS--CCSGGGSSSSTTCCCTTSTTTHHHHTTS----TTCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHhCchHHHHHHHhcchhcccHH--HHHHHHHHHHhCCCHHHHHHHHHHHhCC----CchhHHHHHHHHHHH
Confidence 88888888888888877654332111 1111 1223556677888888888888887732 134456666676666
Q ss_pred HhcCChhhHHHHhcccC-----------CCCchhHHHHHHHHHhcCChHHHHHHHhhC-------------CC--CChhh
Q 007519 246 IRFGRLEEAQNLFDTVP-----------VRDEISWTSMIDGYLSVGQVSNAYYLFHNM-------------PD--RDAVA 299 (600)
Q Consensus 246 ~~~~~~~~a~~~~~~~~-----------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-------------~~--~~~~~ 299 (600)
++- +.++..+.++..- -.....|..++-.|.+-.+++.|....-+- .. .|...
T Consensus 274 sKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ltMi~h~~~Aw~h~~Fkdii~KVaN~Ei 352 (624)
T 3lvg_A 274 SKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVEL 352 (624)
T ss_dssp HSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHHTTTSCHHHHCCGGGGTTTGGGCSCSHH
T ss_pred Hhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHHHHhCChhhccHHHHHHHHHHcchHHH
Confidence 654 4555555544432 124557888888888888888775432111 00 34555
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhcccchhhhHHHHHHHhhhcCCCchhHHHHHHHHHHh
Q 007519 300 WTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAK 379 (600)
Q Consensus 300 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 379 (600)
|...|.-|.+.. +...-.++.-+.. .+.++ .+++.+.+.+++.....++..... ..+..+-.++-+.|..
T Consensus 353 yYKAi~FYL~e~-P~lL~DLL~vL~p-rlDh~-----RvV~~~~k~~~LpLIkpYL~~Vq~---~N~~aVNeAln~L~IE 422 (624)
T 3lvg_A 353 YYRAIQFYLEFK-PLLLNDLLMVLSP-RLDHT-----RAVNYFSKVKQLPLVKPYLRSVQN---HNNKSVNESLNNLFIT 422 (624)
T ss_dssp HHHHHHHHTTSC-CTTSHHHHHHHCT-TCCST-----TTHHHHHTTTCGGGGTGGGTSCCC---SCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-hHHHHHHHHhccc-cCChH-----HHHHHHHhcCCchhhHHHHHHHHH---hhHHHHHHHHHHHHhh
Confidence 555555554322 2222222222211 11111 223334444454444444333222 2245556677778888
Q ss_pred cCChHHHHHHHhcCC------------CCChhhHHH-HHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhccc
Q 007519 380 CGVIDNAYNIFSNMV------------SRDLVSWNS-MVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHA 446 (600)
Q Consensus 380 ~~~~~~A~~~~~~~~------------~~~~~~~~~-l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 446 (600)
..+++.-+.-.+.-. +....-|.. -...|.+.+++++++.+.+ ....|.-.+...+.+
T Consensus 423 EEDy~~LR~SId~ydNFD~i~LA~rLEkHeL~eFRrIAA~LYkkn~rw~qsi~l~K---------kDklykDAietAa~S 493 (624)
T 3lvg_A 423 EEDYQALRTSIDAYDNFDNISLAQRLEKHELIEFRRIAAYLFKGNNRWKQSVELCK---------KDSLYKDAMQYASES 493 (624)
T ss_dssp TTCCHHHHHTTSSCCCSCTTHHHHHHHTCSSHHHHHHHHHHHHTTCHHHHHSSCSS---------TTCCTTGGGTTTTTC
T ss_pred hhhHHHHHHHHHHhccccHHHHHHHHhhCchHHHHHHHHHHHHhcccHHHHHHHHH---------hcccHHHHHHHHHHc
Confidence 888776665544332 122222332 3345667777777766532 222344456667778
Q ss_pred CchHHHHHHHHHHHhhcCCCCCcchHHHHHHHHhhcCChHHHHHHH
Q 007519 447 GLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFV 492 (600)
Q Consensus 447 g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 492 (600)
|+.+-+.++++-..+. -+...+.+.+..|...=+.+-++++-
T Consensus 494 ~~~elaeeLL~yFv~~----g~~EcF~a~LytCYdLlrpDvVlEla 535 (624)
T 3lvg_A 494 KDTELAEELLQWFLQE----EKRECFGACLFTCYDLLRPDVVLETA 535 (624)
T ss_dssp CCTTHHHHHHHHHHHH----CSTHHHHHHHHHTSSSSSCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHc----CchHHHHHHHHHHhhccChHHHHHHH
Confidence 8888888888887764 34556777777777777888888774
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.42 E-value=3.9e-06 Score=73.04 Aligned_cols=153 Identities=10% Similarity=-0.048 Sum_probs=111.3
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccCchHHHHHHHHHHHhhc---CCCC-CcchHHHHHHHHhhcCC
Q 007519 409 SHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVY---KIQP-GPEHYVSMINLLGRAGK 484 (600)
Q Consensus 409 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~p-~~~~~~~l~~~~~~~g~ 484 (600)
...|++++|.++++.+... .......+..+...+...|++++|...++++.... +..| ...++..++..|...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 4679999999966655431 12344677788888999999999999999887632 1222 35678889999999999
Q ss_pred hHHHHHHHHhCC----CCC-C----HHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCC--CC----CcHHHHhHHHHhh
Q 007519 485 IKEAEEFVLRLP----FEP-D----HRIWGALLGACGFCEGNAEIAEHAAKRLLELDPL--NA----PAHVVLCNIYAAS 549 (600)
Q Consensus 485 ~~~A~~~~~~~~----~~p-~----~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~--~~----~~~~~l~~~~~~~ 549 (600)
+++|.+.+++.. ..+ + ...+..+...+. ..|++++|+..+++++++.+. ++ .++..++.++...
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~ 160 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVAL-HFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQE 160 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHC
Confidence 999999987753 122 2 234666666777 899999999999999975322 22 2357899999999
Q ss_pred CCcHHHHHHHHHHh
Q 007519 550 GRHVEEHKLRMDMG 563 (600)
Q Consensus 550 g~~~~A~~~~~~~~ 563 (600)
|++++|.+.++...
T Consensus 161 g~~~~A~~~~~~al 174 (203)
T 3gw4_A 161 KNLLEAQQHWLRAR 174 (203)
T ss_dssp TCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHH
Confidence 99999999665554
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.41 E-value=1.4e-06 Score=70.29 Aligned_cols=99 Identities=8% Similarity=-0.126 Sum_probs=59.4
Q ss_pred ChhHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHH
Q 007519 432 NSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQP-GPEHYVSMINLLGRAGKIKEAEEFVLRLP-FEP-DHRIWGALL 508 (600)
Q Consensus 432 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~ 508 (600)
+...+..+...+...|++++|...|+++... .| +...+..++.++...|++++|...+++.. ..| +...+..+.
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 84 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITR---NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 84 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh---CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHH
Confidence 3455555666666666666666666666653 33 35556666666666666666666666543 233 344555555
Q ss_pred HHHhhhhCCHHHHHHHHHHHHhhCCC
Q 007519 509 GACGFCEGNAEIAEHAAKRLLELDPL 534 (600)
Q Consensus 509 ~~~~~~~g~~~~a~~~~~~~~~~~p~ 534 (600)
..+. ..|++++|+..+++++++.|+
T Consensus 85 ~~~~-~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 85 QCQL-EMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHH-HTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHH-HHhhHHHHHHHHHHHHHHChh
Confidence 5555 666666666666666666664
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.41 E-value=9.3e-07 Score=74.11 Aligned_cols=96 Identities=14% Similarity=-0.025 Sum_probs=84.9
Q ss_pred CcchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCCcHHHHhHH
Q 007519 468 GPEHYVSMINLLGRAGKIKEAEEFVLRLP-FEP-DHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNI 545 (600)
Q Consensus 468 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 545 (600)
+...+..++..+.+.|++++|.+.|++.. ..| +...|..+..++. ..|++++|+..++++++++|+++..+..++.+
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYS-ASGQHEKAAEDAELATVVDPKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHH-HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 46678889999999999999999999874 445 5677888888888 99999999999999999999999999999999
Q ss_pred HHhhCCcHHHHHHHHHHhh
Q 007519 546 YAASGRHVEEHKLRMDMGL 564 (600)
Q Consensus 546 ~~~~g~~~~A~~~~~~~~~ 564 (600)
|...|++++|...++...+
T Consensus 89 ~~~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIE 107 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHH
Confidence 9999999999997766554
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.41 E-value=8.8e-07 Score=70.45 Aligned_cols=94 Identities=12% Similarity=0.063 Sum_probs=43.7
Q ss_pred HHHHHHHhcccCchHHHHHHHHHHHhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhCC-C----CCC----HHHHH
Q 007519 436 FLGILSACSHAGLVSRGWELFNAMFDVYKIQP-GPEHYVSMINLLGRAGKIKEAEEFVLRLP-F----EPD----HRIWG 505 (600)
Q Consensus 436 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~----~p~----~~~~~ 505 (600)
+..+...+.+.|++++|++.|+++.+. .| +...|..++.+|.+.|++++|++.+++.. . .++ ..++.
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~---~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIEL---DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 344444555555555555555555432 33 24445555555555555555555554432 1 111 11233
Q ss_pred HHHHHHhhhhCCHHHHHHHHHHHHhhCC
Q 007519 506 ALLGACGFCEGNAEIAEHAAKRLLELDP 533 (600)
Q Consensus 506 ~l~~~~~~~~g~~~~a~~~~~~~~~~~p 533 (600)
.+..++. ..|++++|+..|+++++..|
T Consensus 88 ~lg~~~~-~~~~~~~A~~~~~kal~~~~ 114 (127)
T 4gcn_A 88 RAGNAFQ-KQNDLSLAVQWFHRSLSEFR 114 (127)
T ss_dssp HHHHHHH-HTTCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHH-HcCCHHHHHHHHHHHHhhCc
Confidence 3333444 45555555555555555444
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.41 E-value=1.5e-06 Score=75.43 Aligned_cols=165 Identities=10% Similarity=-0.031 Sum_probs=99.0
Q ss_pred HhcCChHHHHHHHhcCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccCchHHHHH
Q 007519 378 AKCGVIDNAYNIFSNMVS---RDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWE 454 (600)
Q Consensus 378 ~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~ 454 (600)
...|+++++.+.++.-.. .....+..+...+...|++++|+..|++.... .|+...+... ....-.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~--------~~~~~~- 83 (198)
T 2fbn_A 15 ENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDF--FIHTEEWDDQ--------ILLDKK- 83 (198)
T ss_dssp -------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TTTCTTCCCH--------HHHHHH-
T ss_pred hhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--Hhcccccchh--------hHHHHH-
Confidence 334555555555543321 13345555666666777777777777776653 2221100000 000000
Q ss_pred HHHHHHhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhC
Q 007519 455 LFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLP-FEP-DHRIWGALLGACGFCEGNAEIAEHAAKRLLELD 532 (600)
Q Consensus 455 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~ 532 (600)
.. .....+..++.+|...|++++|.+.+++.. ..| +...+..+..++. ..|++++|+..+++++++.
T Consensus 84 --~~--------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~-~~~~~~~A~~~~~~al~~~ 152 (198)
T 2fbn_A 84 --KN--------IEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANM-YFGFLEEAKENLYKAASLN 152 (198)
T ss_dssp --HH--------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHS
T ss_pred --HH--------HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH-HcccHHHHHHHHHHHHHHC
Confidence 00 012467778888889999999998888764 334 5667777888888 9999999999999999999
Q ss_pred CCCCCcHHHHhHHHHhhCCcHHHHH-HHHHHhh
Q 007519 533 PLNAPAHVVLCNIYAASGRHVEEHK-LRMDMGL 564 (600)
Q Consensus 533 p~~~~~~~~l~~~~~~~g~~~~A~~-~~~~~~~ 564 (600)
|+++.++..++.++...|+.+++.+ .++.+-.
T Consensus 153 p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 153 PNNLDIRNSYELCVNKLKEARKKDKLTFGGMFD 185 (198)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHC-----------
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999888888874 5554433
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.40 E-value=2.6e-06 Score=76.61 Aligned_cols=173 Identities=8% Similarity=-0.042 Sum_probs=109.5
Q ss_pred cCCChhHHHHHhhhcCC--C-ChhhHHHH-------HHHHHhcCChHHHHHHhhcCCC--C-------C-----------
Q 007519 54 QNGRLSEARRLFEEMPE--R-NVVSWTAM-------ICGLADAGRVCEARKLFEEMPE--R-------N----------- 103 (600)
Q Consensus 54 ~~~~~~~A~~~~~~~~~--~-~~~~~~~l-------~~~~~~~g~~~~A~~~~~~~~~--~-------~----------- 103 (600)
..++...|.+.|.++.+ | ....|..+ ..++.+.++..+++..+..-.+ | +
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~~ 97 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITYP 97 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEEE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccccc
Confidence 57888888888888775 2 23456655 4555555555666555555443 1 1
Q ss_pred ----ceeHHHHHHHHHHCCChhHHHHHhhcCCC--CCcccHHHHHHHHHhcCCHhHHHHHHHhcccC-C----chhHHHH
Q 007519 104 ----VVSWNSMVVGLIRNGELNEARKVFNSMPI--KNVISWNAMIAGYVECCMMGEAIVLFEEMEER-N----VVTWTSM 172 (600)
Q Consensus 104 ----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~----~~~~~~l 172 (600)
...+..++..+...|++++|.++|+.+.. |+......+...+.+.+++++|+..|+...+. + ...+..+
T Consensus 98 v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~L 177 (282)
T 4f3v_A 98 VTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAH 177 (282)
T ss_dssp CSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHH
T ss_pred cCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHH
Confidence 01233456677777888888888887765 33234455555677777777777777766542 1 2355666
Q ss_pred HHHHHhcCChhHHHHHHccCCC-CC-----cchHHHHHHHHHhcCChhHHHHHHHHHHhh
Q 007519 173 ISGYCRAGEVEEGYCLFRRMPR-KN-----VVSWTAMIGGFAWNGFHKESLLLFIEMKGI 226 (600)
Q Consensus 173 ~~~~~~~g~~~~A~~~~~~~~~-~~-----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 226 (600)
..++.+.|++++|++.|++... +. .........++.+.|+.++|..+|+++...
T Consensus 178 G~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 178 GVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 7777777777777777776642 21 124455666677777777777777777765
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.39 E-value=3e-06 Score=70.99 Aligned_cols=126 Identities=10% Similarity=-0.024 Sum_probs=79.6
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCC-CcchHHHHHHH
Q 007519 400 SWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQP-GPEHYVSMINL 478 (600)
Q Consensus 400 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~ 478 (600)
.|..+...+...|++++|...|++..... +.+...+..+..++...|++++|...++++.+. .| +...+..++.+
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~a~~ 90 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL---DKKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcccHHHHHHHHHH
Confidence 45555666666777777777777766642 334556666666677777777777777777654 34 45667777777
Q ss_pred HhhcCChHHHHHHHHhCC-CCC-CHHHHHHH--HHHHhhhhCCHHHHHHHHHHHHh
Q 007519 479 LGRAGKIKEAEEFVLRLP-FEP-DHRIWGAL--LGACGFCEGNAEIAEHAAKRLLE 530 (600)
Q Consensus 479 ~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l--~~~~~~~~g~~~~a~~~~~~~~~ 530 (600)
+...|++++|.+.+++.. ..| +...+..+ ...+. ..|++++|+..+++..+
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIV-KQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH-HHHHHHHHHHcccchHH
Confidence 777777777777776653 233 33333222 22244 66777888777777655
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.39 E-value=3.2e-06 Score=69.14 Aligned_cols=108 Identities=13% Similarity=-0.005 Sum_probs=63.6
Q ss_pred HHHHHHHHhcccCchHHHHHHHHHHHhhcCCCCC----cchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHH
Q 007519 435 TFLGILSACSHAGLVSRGWELFNAMFDVYKIQPG----PEHYVSMINLLGRAGKIKEAEEFVLRLP-FEP-DHRIWGALL 508 (600)
Q Consensus 435 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~ 508 (600)
.+..+...+...|++++|.+.|+++.+ ..|+ ...+..++..|...|++++|.+.+++.. ..| +...+..+.
T Consensus 30 ~~~~~a~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a 106 (148)
T 2dba_A 30 QLRKEGNELFKCGDYGGALAAYTQALG---LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRS 106 (148)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHT---SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH---HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHH
Confidence 344444455555555555555555543 2343 4455556666666666666666665543 223 345555666
Q ss_pred HHHhhhhCCHHHHHHHHHHHHhhCCCCCCcHHHHhHHH
Q 007519 509 GACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIY 546 (600)
Q Consensus 509 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 546 (600)
..+. ..|++++|+..+++++++.|+++.++..+..+.
T Consensus 107 ~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 143 (148)
T 2dba_A 107 QALE-KLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIS 143 (148)
T ss_dssp HHHH-HHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHH-HcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 6666 777777777777777777776666655555443
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.39 E-value=2e-06 Score=85.48 Aligned_cols=145 Identities=10% Similarity=0.010 Sum_probs=98.8
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCCCcchHHHHHH
Q 007519 398 LVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMIN 477 (600)
Q Consensus 398 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 477 (600)
...|..+...+.+.|++++|+..|++..+. .|+...+ . -+...+ ... -....|..++.
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~----------~-~~~~~~-~~~--------~~~~~~~nla~ 325 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSW--LEMEYGL----------S-EKESKA-SES--------FLLAAFLNLAM 325 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTTCCSC----------C-HHHHHH-HHH--------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccC----------C-hHHHHH-HHH--------HHHHHHHHHHH
Confidence 345666666666777777777777766653 2221100 0 000000 000 01457888999
Q ss_pred HHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCCcHHHHhHHHHhhCCcHHH
Q 007519 478 LLGRAGKIKEAEEFVLRLP-FEP-DHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEE 555 (600)
Q Consensus 478 ~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 555 (600)
+|.+.|++++|+..+++.. ..| +...+..+..++. ..|++++|+..|+++++++|++..++..++.++.+.|+++++
T Consensus 326 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~-~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a 404 (457)
T 1kt0_A 326 CYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQL-LMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNER 404 (457)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHH-HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998864 344 5677888888888 999999999999999999999999999999999999999998
Q ss_pred HH-HHHHHhhc
Q 007519 556 HK-LRMDMGLK 565 (600)
Q Consensus 556 ~~-~~~~~~~~ 565 (600)
.+ +++.|-.+
T Consensus 405 ~~~~~~~~f~k 415 (457)
T 1kt0_A 405 DRRIYANMFKK 415 (457)
T ss_dssp HHHHHHHC---
T ss_pred HHHHHHHHHhh
Confidence 87 66665443
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.36 E-value=2.3e-06 Score=66.74 Aligned_cols=96 Identities=14% Similarity=0.070 Sum_probs=83.8
Q ss_pred cchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCCcHHHHhHHH
Q 007519 469 PEHYVSMINLLGRAGKIKEAEEFVLRLP-FEP-DHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIY 546 (600)
Q Consensus 469 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 546 (600)
...+..++..+...|++++|.+.+++.. ..| +...+..+...+. ..|++++|+..++++++..|+++..+..++.++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYA-KKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHH-hhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 4567788899999999999999999874 334 6677777888888 999999999999999999999999999999999
Q ss_pred HhhCCcHHHHHHHHHHhhc
Q 007519 547 AASGRHVEEHKLRMDMGLK 565 (600)
Q Consensus 547 ~~~g~~~~A~~~~~~~~~~ 565 (600)
...|++++|.+.++...+.
T Consensus 83 ~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTT
T ss_pred HHHhhHHHHHHHHHHHHHc
Confidence 9999999999988766554
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.34 E-value=1.1e-06 Score=69.86 Aligned_cols=89 Identities=8% Similarity=-0.031 Sum_probs=46.8
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCC-------cHHH
Q 007519 471 HYVSMINLLGRAGKIKEAEEFVLRLP-FEP-DHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAP-------AHVV 541 (600)
Q Consensus 471 ~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~-------~~~~ 541 (600)
.+..++..+.+.|++++|++.|++.. ..| +...|..+..++. ..|++++|+..+++++++.|+++. +|..
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYF-EEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHH-HhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 34445555555566666655555542 233 3344445555555 555666666666655555554332 3444
Q ss_pred HhHHHHhhCCcHHHHHHHH
Q 007519 542 LCNIYAASGRHVEEHKLRM 560 (600)
Q Consensus 542 l~~~~~~~g~~~~A~~~~~ 560 (600)
++.++...|++++|++.++
T Consensus 89 lg~~~~~~~~~~~A~~~~~ 107 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFH 107 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHH
Confidence 5555555566666555443
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.33 E-value=2.7e-06 Score=68.66 Aligned_cols=94 Identities=19% Similarity=-0.016 Sum_probs=53.0
Q ss_pred CcchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCCcHHHHhHH
Q 007519 468 GPEHYVSMINLLGRAGKIKEAEEFVLRLP-FEP-DHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNI 545 (600)
Q Consensus 468 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 545 (600)
+...+..++..+...|++++|...+++.. ..| +...+..+...+. ..|++++|+..++++++++|+++..+..++.+
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 86 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYL-KMQQPEQALADCRRALELDGQSVKAHFFLGQC 86 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 34455555666666666666666655542 223 3444455555555 56666666666666666666555666666666
Q ss_pred HHhhCCcHHHHHHHHHH
Q 007519 546 YAASGRHVEEHKLRMDM 562 (600)
Q Consensus 546 ~~~~g~~~~A~~~~~~~ 562 (600)
+...|++++|...++..
T Consensus 87 ~~~~~~~~~A~~~~~~a 103 (137)
T 3q49_B 87 QLEMESYDEAIANLQRA 103 (137)
T ss_dssp HHHTTCHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHH
Confidence 66666666666644443
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.33 E-value=2.3e-06 Score=68.49 Aligned_cols=97 Identities=9% Similarity=-0.053 Sum_probs=85.4
Q ss_pred CcchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCCcHHHHhHH
Q 007519 468 GPEHYVSMINLLGRAGKIKEAEEFVLRLP-FEP-DHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNI 545 (600)
Q Consensus 468 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 545 (600)
+...+..++..+...|++++|.+.+++.. ..| +...+..+...+. ..|++++|+..++++++..|+++.++..++.+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 93 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYT-KLLEFQLALKDCEECIQLEPTFIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHT-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH-HhccHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 46678889999999999999999998864 445 5677888888888 99999999999999999999999999999999
Q ss_pred HHhhCCcHHHHHHHHHHhhc
Q 007519 546 YAASGRHVEEHKLRMDMGLK 565 (600)
Q Consensus 546 ~~~~g~~~~A~~~~~~~~~~ 565 (600)
+...|++++|.+.++...+.
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHh
Confidence 99999999999988766554
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.32 E-value=8.1e-06 Score=64.23 Aligned_cols=92 Identities=17% Similarity=0.339 Sum_probs=42.0
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCC-CcchHHHHHHH
Q 007519 400 SWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQP-GPEHYVSMINL 478 (600)
Q Consensus 400 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~ 478 (600)
.|..+...+...|++++|.++++++.... +.+...+..+...+...|++++|..+++++.+. .| +...+..++..
T Consensus 11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~la~~ 86 (125)
T 1na0_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL---DPNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh---CCccHHHHHHHHHH
Confidence 33444444444445555555554444431 223334444444444455555555555544432 12 33444445555
Q ss_pred HhhcCChHHHHHHHHhC
Q 007519 479 LGRAGKIKEAEEFVLRL 495 (600)
Q Consensus 479 ~~~~g~~~~A~~~~~~~ 495 (600)
|...|++++|.+.++++
T Consensus 87 ~~~~~~~~~A~~~~~~~ 103 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKA 103 (125)
T ss_dssp HHHTTCHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHH
Confidence 55555555555555443
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.28 E-value=3.4e-06 Score=66.27 Aligned_cols=97 Identities=18% Similarity=0.051 Sum_probs=67.8
Q ss_pred HHHHHHHhcccCchHHHHHHHHHHHhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHh
Q 007519 436 FLGILSACSHAGLVSRGWELFNAMFDVYKIQP-GPEHYVSMINLLGRAGKIKEAEEFVLRLP-FEP-DHRIWGALLGACG 512 (600)
Q Consensus 436 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~ 512 (600)
+..+...+.+.|++++|...++++.+. .| +...+..++.++...|++++|+..+++.. ..| +...+..+..++.
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQK---EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT 96 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 334455667778888888888887764 55 56777788888888888888888887764 444 4556666777777
Q ss_pred hhhCCHHHHHHHHHHHHhhCCCCC
Q 007519 513 FCEGNAEIAEHAAKRLLELDPLNA 536 (600)
Q Consensus 513 ~~~g~~~~a~~~~~~~~~~~p~~~ 536 (600)
..|++++|+..++++++.+|+++
T Consensus 97 -~~g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 97 -NEHNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp -HHHHHHHHHHHHHHHHC------
T ss_pred -HcCCHHHHHHHHHHHHHhCcCCC
Confidence 88888888888888888888543
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.28 E-value=1.7e-06 Score=86.31 Aligned_cols=118 Identities=8% Similarity=-0.042 Sum_probs=95.3
Q ss_pred HHHHhcccCchHHHHHHHHHHHhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHhhhh
Q 007519 439 ILSACSHAGLVSRGWELFNAMFDVYKIQP-GPEHYVSMINLLGRAGKIKEAEEFVLRLP-FEP-DHRIWGALLGACGFCE 515 (600)
Q Consensus 439 l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~ 515 (600)
+...+...|++++|.+.++++.+. .| +...+..++.+|.+.|++++|.+.+++.. ..| +...+..+..++. ..
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~-~~ 87 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIEL---NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM-AL 87 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHH-HH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-Hc
Confidence 344566788999999999988865 56 47788899999999999999999998864 455 4667788888888 99
Q ss_pred CCHHHHHHHHHHHHhhCCCCCCcHHHHhHH--HHhhCCcHHHHHHHH
Q 007519 516 GNAEIAEHAAKRLLELDPLNAPAHVVLCNI--YAASGRHVEEHKLRM 560 (600)
Q Consensus 516 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~A~~~~~ 560 (600)
|++++|+..+++++++.|+++..+..++.+ +.+.|++++|.+.++
T Consensus 88 g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 88 GKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp TCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 999999999999999999999999888888 888899999999776
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.27 E-value=5.1e-06 Score=67.95 Aligned_cols=97 Identities=13% Similarity=-0.067 Sum_probs=85.2
Q ss_pred CcchHHHHHHHHhhcCChHHHHHHHHhCC-CCCC----HHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCCcHHHH
Q 007519 468 GPEHYVSMINLLGRAGKIKEAEEFVLRLP-FEPD----HRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVL 542 (600)
Q Consensus 468 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~----~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 542 (600)
+...+..++..+...|++++|.+.+++.. ..|+ ...+..+...+. ..|++++|+..++++++..|+++..+..+
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 105 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHL-KLEDYDKAETEASKAIEKDGGDVKALYRR 105 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHH-HHccHHHHHHHHHHHHhhCccCHHHHHHH
Confidence 46678889999999999999999998864 6676 466777777787 99999999999999999999999999999
Q ss_pred hHHHHhhCCcHHHHHHHHHHhhc
Q 007519 543 CNIYAASGRHVEEHKLRMDMGLK 565 (600)
Q Consensus 543 ~~~~~~~g~~~~A~~~~~~~~~~ 565 (600)
+.++...|++++|...++...+.
T Consensus 106 a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 106 SQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHc
Confidence 99999999999999988766554
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.26 E-value=9.9e-06 Score=64.37 Aligned_cols=89 Identities=10% Similarity=0.056 Sum_probs=38.3
Q ss_pred HHHHHHHhcCChHHHHHHHhcCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccCc
Q 007519 372 CLISMYAKCGVIDNAYNIFSNMV---SRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGL 448 (600)
Q Consensus 372 ~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~ 448 (600)
.+...+...|++++|...|++.. +.+...+..+...+...|++++|+..+++..... +.+...+..+..++...|+
T Consensus 17 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 95 (131)
T 2vyi_A 17 TEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLALSSLNK 95 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHHHHhCC
Confidence 33444444444444444444432 2233344444444444444444444444444431 2223333444444444444
Q ss_pred hHHHHHHHHHHHh
Q 007519 449 VSRGWELFNAMFD 461 (600)
Q Consensus 449 ~~~a~~~~~~~~~ 461 (600)
+++|...++++.+
T Consensus 96 ~~~A~~~~~~~~~ 108 (131)
T 2vyi_A 96 HVEAVAYYKKALE 108 (131)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 4444444444443
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.26 E-value=0.00041 Score=64.65 Aligned_cols=169 Identities=9% Similarity=0.025 Sum_probs=90.4
Q ss_pred hCCChhHHHHHHHHHHHCCCCCChhH-HHHHHHHHhccc-chhhhHHHHHHHhhhcCCCchhHHHHHHHHHHhc-C-ChH
Q 007519 309 QNELFVEATYLFMEMRAHGVPPLNAT-FSVLFGAAGATA-NIDLGRQIHCVLMKTESESDLILENCLISMYAKC-G-VID 384 (600)
Q Consensus 309 ~~g~~~~a~~~~~~m~~~g~~p~~~~-~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-~~~ 384 (600)
..+..++|++++++++.. .|+..| ++.--.++...+ .++++..++..+.....+ +..+++.-...+... + +++
T Consensus 66 ~~e~se~AL~lt~~~L~~--nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~~~~~ 142 (349)
T 3q7a_A 66 KEEKSERALELTEIIVRM--NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRISPQDPV 142 (349)
T ss_dssp TTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHCCSCCH
T ss_pred hCCCCHHHHHHHHHHHHh--CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCCChH
Confidence 344445677777777664 444332 333333333444 355566666555544333 333444443344443 4 666
Q ss_pred HHHHHHhcCC---CCChhhHHHHHHHHHhcCChH--------HHHHHHHHHHHcCCCCChhHHHHHHHHhcccCc-----
Q 007519 385 NAYNIFSNMV---SRDLVSWNSMVMGFSHHGLAN--------ETLKVFESMLESGTHPNSVTFLGILSACSHAGL----- 448 (600)
Q Consensus 385 ~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~--------~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~----- 448 (600)
+++.+++++. +.|..+|+.-...+.+.|.++ ++++.++++.+.. +-|...|+.-...+.+.+.
T Consensus 143 ~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~~ 221 (349)
T 3q7a_A 143 SEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETSS 221 (349)
T ss_dssp HHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCCH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccch
Confidence 7777777665 344556655555554444444 6777777776643 3344555554444444443
Q ss_pred --hHHHHHHHHHHHhhcCCCC-CcchHHHHHHHHhhcCC
Q 007519 449 --VSRGWELFNAMFDVYKIQP-GPEHYVSMINLLGRAGK 484 (600)
Q Consensus 449 --~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~ 484 (600)
++++++.++++... .| |...|+.+-..+.+.|+
T Consensus 222 ~~~~eELe~~~~aI~~---~P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 222 RSLQDELIYILKSIHL---IPHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp HHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhcCC
Confidence 56666666666643 45 45666666666655554
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.25 E-value=2.9e-06 Score=67.61 Aligned_cols=99 Identities=15% Similarity=0.048 Sum_probs=62.7
Q ss_pred HHHHHhcccCchHHHHHHHHHHHhhcCCCCC-c---chHHHHHHHHhhcCChHHHHHHHHhCC-CCCC----HHHHHHHH
Q 007519 438 GILSACSHAGLVSRGWELFNAMFDVYKIQPG-P---EHYVSMINLLGRAGKIKEAEEFVLRLP-FEPD----HRIWGALL 508 (600)
Q Consensus 438 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~---~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~----~~~~~~l~ 508 (600)
.+...+...|++++|...|+++.+. .|+ . ..+..++.++.+.|++++|.+.+++.. ..|+ ...+..+.
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la 83 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLEL---YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLG 83 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH---CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHH---CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHH
Confidence 3445566777777777777777654 332 2 366667777777777777777776653 2332 34455555
Q ss_pred HHHhhhhCCHHHHHHHHHHHHhhCCCCCCcHH
Q 007519 509 GACGFCEGNAEIAEHAAKRLLELDPLNAPAHV 540 (600)
Q Consensus 509 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 540 (600)
.++. ..|++++|+..++++++..|+++....
T Consensus 84 ~~~~-~~g~~~~A~~~~~~~~~~~p~~~~~~~ 114 (129)
T 2xev_A 84 LSQY-GEGKNTEAQQTLQQVATQYPGSDAARV 114 (129)
T ss_dssp HHHH-HTTCHHHHHHHHHHHHHHSTTSHHHHH
T ss_pred HHHH-HcCCHHHHHHHHHHHHHHCCCChHHHH
Confidence 5566 777777777777777777775544333
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.25 E-value=0.00021 Score=66.24 Aligned_cols=218 Identities=12% Similarity=0.084 Sum_probs=100.2
Q ss_pred HhCCChh-HHHHHHHHHHHCCCCCChhH-HHHHHHHHhcccc----------hhhhHHHHHHHhhhcCCCchhHHHHHHH
Q 007519 308 VQNELFV-EATYLFMEMRAHGVPPLNAT-FSVLFGAAGATAN----------IDLGRQIHCVLMKTESESDLILENCLIS 375 (600)
Q Consensus 308 ~~~g~~~-~a~~~~~~m~~~g~~p~~~~-~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 375 (600)
.+.|+++ +|+.+++.+... .|+..| ++.--..+...+. ++.+..++..+.....+ +..+|+.-.-
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~--nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PK-ny~aW~hR~w 116 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCW 116 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 3455554 678888887764 555443 2221111111111 34444555544443332 3334443333
Q ss_pred HHHhcC--ChHHHHHHHhcCC---CCChhhHHHHHHHHHhcCC-hHHHHHHHHHHHHcCCCCChhHHHHHHHHhccc---
Q 007519 376 MYAKCG--VIDNAYNIFSNMV---SRDLVSWNSMVMGFSHHGL-ANETLKVFESMLESGTHPNSVTFLGILSACSHA--- 446 (600)
Q Consensus 376 ~~~~~~--~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~--- 446 (600)
++...+ .+++++.+++.+. +.|...|+.-..++...|. ++++++.+.++.+.. +-|...|+.....+...
T Consensus 117 lL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW~~R~~ll~~l~~~ 195 (331)
T 3dss_A 117 LLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQ 195 (331)
T ss_dssp HHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHHSCC
T ss_pred HHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhhhc
Confidence 444444 3556666666554 4455555555555555555 356666666666542 22333333332222221
Q ss_pred -----------CchHHHHHHHHHHHhhcCCCC-CcchHHHHHHHHhhc-----------CChHHHHHHHHhCC-CCCCHH
Q 007519 447 -----------GLVSRGWELFNAMFDVYKIQP-GPEHYVSMINLLGRA-----------GKIKEAEEFVLRLP-FEPDHR 502 (600)
Q Consensus 447 -----------g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~~~-~~p~~~ 502 (600)
+.++++++.+..+... .| |...|+.+-..+.+. +.++++++.++++. ..|+.
T Consensus 196 ~~~~~~~~~~~~~~~eEle~~~~ai~~---~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~- 271 (331)
T 3dss_A 196 PDSGPQGRLPENVLLKELELVQNAFFT---DPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPEN- 271 (331)
T ss_dssp C------CCCHHHHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTC-
T ss_pred cccccccccchHHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCccc-
Confidence 3455555555555543 44 445555444444333 23445555554442 33432
Q ss_pred HHHHHHHHHh----hhhCCHHHHHHHHHHHHhhCC
Q 007519 503 IWGALLGACG----FCEGNAEIAEHAAKRLLELDP 533 (600)
Q Consensus 503 ~~~~l~~~~~----~~~g~~~~a~~~~~~~~~~~p 533 (600)
.|..+..+.. ...|..++....+.++++++|
T Consensus 272 ~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp 306 (331)
T 3dss_A 272 KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDP 306 (331)
T ss_dssp HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCG
T ss_pred chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCc
Confidence 2221111110 023444555555555555555
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.25 E-value=2.4e-06 Score=69.19 Aligned_cols=101 Identities=13% Similarity=0.037 Sum_probs=51.7
Q ss_pred HHHHHHHhcccCchHHHHHHHHHHHhhcCCCCC-------------cchHHHHHHHHhhcCChHHHHHHHHhCC-C----
Q 007519 436 FLGILSACSHAGLVSRGWELFNAMFDVYKIQPG-------------PEHYVSMINLLGRAGKIKEAEEFVLRLP-F---- 497 (600)
Q Consensus 436 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~---- 497 (600)
+......+...|++++|...|+++.+. .|+ ...|..++.++.+.|++++|+..+++.. .
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l---~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEI---SHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH---HTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhh---CCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 444555666777777777777777754 333 1144445555555555555554444432 2
Q ss_pred ---CCCH-HHH----HHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCCcHH
Q 007519 498 ---EPDH-RIW----GALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHV 540 (600)
Q Consensus 498 ---~p~~-~~~----~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 540 (600)
.|+. ..| .....++. ..|++++|+..|++++++.|++..+..
T Consensus 91 ~e~~pd~~~A~~~~~~~rG~aL~-~lgr~eEAl~~y~kAlel~p~d~~~~~ 140 (159)
T 2hr2_A 91 GELNQDEGKLWISAVYSRALALD-GLGRGAEAMPEFKKVVEMIEERKGETP 140 (159)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHCCSCCT
T ss_pred ccCCCchHHHHHHHHHhHHHHHH-HCCCHHHHHHHHHHHHhcCCCcHHHHH
Confidence 4432 233 44444444 455555555555555555554444443
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.22 E-value=0.00013 Score=67.57 Aligned_cols=209 Identities=12% Similarity=0.085 Sum_probs=144.0
Q ss_pred hhHHHHHHHhhhcCCCchhHHHHHHHHHHhcCC----------hHHHHHHHhcCC---CCChhhHHHHHHHHHhcC--Ch
Q 007519 350 LGRQIHCVLMKTESESDLILENCLISMYAKCGV----------IDNAYNIFSNMV---SRDLVSWNSMVMGFSHHG--LA 414 (600)
Q Consensus 350 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~--~~ 414 (600)
.|......+...++. +..+++.--..+...+. +++++.+++.+. +.+..+|+.-...+...| ++
T Consensus 48 eaL~~t~~~L~~nP~-~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~ 126 (331)
T 3dss_A 48 SVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNW 126 (331)
T ss_dssp HHHHHHHHHHTTCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCH
T ss_pred HHHHHHHHHHHHCch-hHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccH
Confidence 566677766665433 22233332222222222 577888888776 668889988888888888 48
Q ss_pred HHHHHHHHHHHHcCCCCChhHHHHHHHHhcccCc-hHHHHHHHHHHHhhcCCCC-CcchHHHHHHHHhhc----------
Q 007519 415 NETLKVFESMLESGTHPNSVTFLGILSACSHAGL-VSRGWELFNAMFDVYKIQP-GPEHYVSMINLLGRA---------- 482 (600)
Q Consensus 415 ~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~-~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~---------- 482 (600)
++++.+++++.+.. +-|...|+.-...+...|. ++++++.+.++.+. .| |...|+....++.+.
T Consensus 127 ~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~---~p~N~SAW~~R~~ll~~l~~~~~~~~~~ 202 (331)
T 3dss_A 127 ARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR---NFSNYSSWHYRSCLLPQLHPQPDSGPQG 202 (331)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH---CSCCHHHHHHHHHHHHHHSCCC------
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHhhhcccccccc
Confidence 99999999999864 4566677666666667777 58999999999875 56 677888777776655
Q ss_pred ----CChHHHHHHHHhCC-CCC-CHHHHHHHHHHHhhhh-----------CCHHHHHHHHHHHHhhCCCCCCcHHHHhHH
Q 007519 483 ----GKIKEAEEFVLRLP-FEP-DHRIWGALLGACGFCE-----------GNAEIAEHAAKRLLELDPLNAPAHVVLCNI 545 (600)
Q Consensus 483 ----g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~-----------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 545 (600)
+.++++++.+++.. ..| |...|+.+...+. .. +.++++++.+++++++.|++..++..++..
T Consensus 203 ~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~-~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~ 281 (331)
T 3dss_A 203 RLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLG-AGSGRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILL 281 (331)
T ss_dssp CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH-SSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-hccCccccchHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHH
Confidence 45788888888764 445 6677776666655 33 357899999999999999875554444332
Q ss_pred H---HhhCCcHHHHHHHHHHhh
Q 007519 546 Y---AASGRHVEEHKLRMDMGL 564 (600)
Q Consensus 546 ~---~~~g~~~~A~~~~~~~~~ 564 (600)
. ...|..++...++..+.+
T Consensus 282 ~~~~~~~~~~~~~~~~l~~l~~ 303 (331)
T 3dss_A 282 MRALDPLLYEKETLQYFSTLKA 303 (331)
T ss_dssp HHHHCTTTTHHHHHHHHHHHHH
T ss_pred HHhhcccccHHHHHHHHHHHHH
Confidence 2 235777787777777664
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.21 E-value=2.7e-06 Score=81.63 Aligned_cols=135 Identities=13% Similarity=0.048 Sum_probs=98.4
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCC-CcchHHHHHHH
Q 007519 400 SWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQP-GPEHYVSMINL 478 (600)
Q Consensus 400 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~ 478 (600)
.+..+...+.+.|++++|+..|++..+. .|+.. .... .+... ...| +...|..++.+
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~--~~~~~----------~~~~-------~~~~~---~~~~~~~~~~~nla~~ 282 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRY--VEGSR----------AAAE-------DADGA---KLQPVALSCVLNIGAC 282 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHHH----------HHSC-------HHHHG---GGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHH--hhcCc----------cccC-------hHHHH---HHHHHHHHHHHHHHHH
Confidence 4555666666777777777777666542 00000 0000 01111 1234 46788899999
Q ss_pred HhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCCcHHHHhHHHHhhCCcHHHH
Q 007519 479 LGRAGKIKEAEEFVLRLP-FEP-DHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEH 556 (600)
Q Consensus 479 ~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 556 (600)
|.+.|++++|.+.+++.. ..| +...+..+..++. ..|++++|+..++++++++|+++.++..+..++...++.+++.
T Consensus 283 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~-~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 283 KLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQ-GLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHH-HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998864 555 4667777888888 9999999999999999999999999999999999999988887
Q ss_pred H
Q 007519 557 K 557 (600)
Q Consensus 557 ~ 557 (600)
+
T Consensus 362 k 362 (370)
T 1ihg_A 362 K 362 (370)
T ss_dssp H
T ss_pred H
Confidence 6
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.21 E-value=8.3e-06 Score=62.76 Aligned_cols=99 Identities=16% Similarity=0.102 Sum_probs=64.3
Q ss_pred hHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhCC-CCC---CHHHHHHHH
Q 007519 434 VTFLGILSACSHAGLVSRGWELFNAMFDVYKIQP-GPEHYVSMINLLGRAGKIKEAEEFVLRLP-FEP---DHRIWGALL 508 (600)
Q Consensus 434 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p---~~~~~~~l~ 508 (600)
..+..+...+...|++++|...++++.+. .| +...+..++.++...|++++|.+.+++.. ..| +...+..+.
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~ 83 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQL---DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKA 83 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHh---CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHH
Confidence 34445555566666667776666666653 23 45566667777777777777777776653 333 355666666
Q ss_pred HHHhhhh-CCHHHHHHHHHHHHhhCCCCC
Q 007519 509 GACGFCE-GNAEIAEHAAKRLLELDPLNA 536 (600)
Q Consensus 509 ~~~~~~~-g~~~~a~~~~~~~~~~~p~~~ 536 (600)
..+. .. |++++|++.++++++..|+++
T Consensus 84 ~~~~-~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 84 DALR-YIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHHT-TCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHH-HHhCCHHHHHHHHHHHhhcccCCC
Confidence 6666 77 788888888888887777543
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.21 E-value=8.1e-05 Score=69.36 Aligned_cols=210 Identities=10% Similarity=0.100 Sum_probs=147.6
Q ss_pred hhhHHHHHHHhhhcCCCchhHHHHHHHHHHhcC-ChHHHHHHHhcCC---CCChhhHHHHHHHHHhc-C-ChHHHHHHHH
Q 007519 349 DLGRQIHCVLMKTESESDLILENCLISMYAKCG-VIDNAYNIFSNMV---SRDLVSWNSMVMGFSHH-G-LANETLKVFE 422 (600)
Q Consensus 349 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~-~-~~~~a~~~~~ 422 (600)
+.|..+...+...... +..+++.--..+...| .+++++..++.+. +.+..+|+.-...+... + ++++++++++
T Consensus 71 e~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~ 149 (349)
T 3q7a_A 71 ERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIH 149 (349)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHH
Confidence 4567777777666544 3445566566666677 5999999999887 56778888877777776 7 8999999999
Q ss_pred HHHHcCCCCChhHHHHHHHHhcccCchH--------HHHHHHHHHHhhcCCCC-CcchHHHHHHHHhhcCC-------hH
Q 007519 423 SMLESGTHPNSVTFLGILSACSHAGLVS--------RGWELFNAMFDVYKIQP-GPEHYVSMINLLGRAGK-------IK 486 (600)
Q Consensus 423 ~m~~~~~~p~~~~~~~l~~~~~~~g~~~--------~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~-------~~ 486 (600)
++.+.. +-|...|..-...+.+.|.++ ++++.++++.+. .| |...|+....++.+.++ ++
T Consensus 150 k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~---dp~N~SAW~~R~~lL~~l~~~~~~~~~~~ 225 (349)
T 3q7a_A 150 GSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRV---DGRNNSAWGWRWYLRVSRPGAETSSRSLQ 225 (349)
T ss_dssp HHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHTTSTTCCCCHHHHH
T ss_pred HHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhccccccchHHHH
Confidence 998753 445566665555555556665 899999999875 56 67788888888888876 68
Q ss_pred HHHHHHHhCC-CCC-CHHHHHHHHHHHhhhhCCH--------------------HHHHHHHHHHHhhC------CCCCCc
Q 007519 487 EAEEFVLRLP-FEP-DHRIWGALLGACGFCEGNA--------------------EIAEHAAKRLLELD------PLNAPA 538 (600)
Q Consensus 487 ~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~g~~--------------------~~a~~~~~~~~~~~------p~~~~~ 538 (600)
++++.++++. ..| |...|+.+...+. +.|.. +........+.... +..+.+
T Consensus 226 eELe~~~~aI~~~P~n~SaW~Ylr~Ll~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~a 304 (349)
T 3q7a_A 226 DELIYILKSIHLIPHNVSAWNYLRGFLK-HFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLA 304 (349)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHH-hcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHH
Confidence 8888887764 445 6677877776665 55543 33333333333332 346677
Q ss_pred HHHHhHHHHhhCCcHHHHHHHHHHhh
Q 007519 539 HVVLCNIYAASGRHVEEHKLRMDMGL 564 (600)
Q Consensus 539 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 564 (600)
...|+.+|...|+.++|.++++.+.+
T Consensus 305 l~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 305 LEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 88999999999999999999988853
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.20 E-value=5.3e-05 Score=76.97 Aligned_cols=169 Identities=13% Similarity=0.009 Sum_probs=136.8
Q ss_pred CChHHHHHHHhcCC---CCChhhHHHHHHHHHhcCC----------hHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccC
Q 007519 381 GVIDNAYNIFSNMV---SRDLVSWNSMVMGFSHHGL----------ANETLKVFESMLESGTHPNSVTFLGILSACSHAG 447 (600)
Q Consensus 381 ~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g 447 (600)
...++|++.++.+. +.+..+|+.-..++...|+ ++++++.++++.+.. +-+...|..-..++.+.|
T Consensus 43 ~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 43 ELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLP 121 (567)
T ss_dssp CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCS
T ss_pred CCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcc
Confidence 34567788888876 5566788877777777776 899999999999853 445567777667777788
Q ss_pred --chHHHHHHHHHHHhhcCCCC-CcchHHHHHHHHhhcC-ChHHHHHHHHhCC-CCC-CHHHHHHHHHHHhhhh------
Q 007519 448 --LVSRGWELFNAMFDVYKIQP-GPEHYVSMINLLGRAG-KIKEAEEFVLRLP-FEP-DHRIWGALLGACGFCE------ 515 (600)
Q Consensus 448 --~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~------ 515 (600)
+++++++.++++.+. .| +...|+.-..++.+.| .++++.+.++++. ..| +...|+.....+. ..
T Consensus 122 ~~~~~~el~~~~k~l~~---d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~-~l~~~~~~ 197 (567)
T 1dce_A 122 EPNWARELELCARFLEA---DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLP-QLHPQPDS 197 (567)
T ss_dssp SCCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHH-HHSCCCCS
T ss_pred cccHHHHHHHHHHHHhh---ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHH-hhcccccc
Confidence 679999999999975 56 6788888888888999 8999999998875 555 6778888777765 42
Q ss_pred --------CCHHHHHHHHHHHHhhCCCCCCcHHHHhHHHHhhCCcHH
Q 007519 516 --------GNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVE 554 (600)
Q Consensus 516 --------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 554 (600)
+.++++++.+.+++..+|++..+|..+.+++.+.|+.++
T Consensus 198 ~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 198 GPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 567999999999999999999999999999999888555
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=98.20 E-value=1.7e-06 Score=81.52 Aligned_cols=257 Identities=14% Similarity=0.135 Sum_probs=167.0
Q ss_pred CcchHHHHHHHHHcCCChhHHHHHhhhcCCCChhhHHHHHHHHHhcCChHHHHHHhhcCCC--CCceeHHHHHHHHHHCC
Q 007519 41 NVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPE--RNVVSWNSMVVGLIRNG 118 (600)
Q Consensus 41 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~ 118 (600)
.+..|..|..+....++..+|++-|-+. .|+..|..++.+..+.|.+++-+..+....+ .++.+=+.|+-+|++.+
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIkA--~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~IDteLi~ayAk~~ 130 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTN 130 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCCC--SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTTTTHHHHHHHHTSC
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHhC--CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccHHHHHHHHHhhC
Confidence 3445666777776767776666655444 3444566667777777777777776666554 44445566677777776
Q ss_pred ChhHHHHHhhcCCCCCcccHHHHHHHHHhcCCHhHHHHHHHhcccCCchhHHHHHHHHHhcCChhHHHHHHccCCCCCcc
Q 007519 119 ELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVV 198 (600)
Q Consensus 119 ~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 198 (600)
+..+-.+++. .||......+..-|...|.++.|.-+|..+ ..|..|...+.+.|++..|.+.-++. .++.
T Consensus 131 rL~elEefl~---~~N~A~iq~VGDrcf~e~lYeAAKilys~i-----sN~akLAstLV~L~~yq~AVdaArKA--ns~k 200 (624)
T 3lvg_A 131 RLAELEEFIN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA--NSTR 200 (624)
T ss_dssp SSSTTTSTTS---CCSSSCTHHHHHHHHHSCCSTTSSTTGGGS-----CCCTTTSSSSSSCSGGGSSTTTTTTC--CSSC
T ss_pred cHHHHHHHHc---CCCcccHHHHHHHHHHccCHHHHHHHHHhC-----ccHHHHHHHHHHHHHHHHHHHHHHhc--CChh
Confidence 6655433222 255555566666666666666665555433 23444445556666666665443322 4778
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHhcCChhhHHHHhcccC---CCCchhHHHHHHH
Q 007519 199 SWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVP---VRDEISWTSMIDG 275 (600)
Q Consensus 199 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~ 275 (600)
||-.+-.+|...+.+..|..+--.+.- .|| -...++..|...|-+++-+.+++... ......++.|.-.
T Consensus 201 tWKeV~~ACvd~~EfrLAqicGLniIv------had--eL~elv~~YE~~G~f~ELIsLlEaglglErAHmGmFTELaIL 272 (624)
T 3lvg_A 201 TWKEVCFACVDGKEFRLAQMCGLHIVV------HAD--ELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAIL 272 (624)
T ss_dssp SHHHHTHHHHHSCTTTTTTHHHHHHHC------CSS--CCSGGGSSSSTTCCCTTSTTTHHHHTTSTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHhCchHHHHHHHhcchhcc------cHH--HHHHHHHHHHhCCCHHHHHHHHHHHhCCCchhHHHHHHHHHH
Confidence 999999999999999988777555542 222 23356677889999999999988776 4466678888888
Q ss_pred HHhcCChHHHHHHHhhCCC----C-------ChhhHHHHHHHHHhCCChhHHHH
Q 007519 276 YLSVGQVSNAYYLFHNMPD----R-------DAVAWTAMISGLVQNELFVEATY 318 (600)
Q Consensus 276 ~~~~~~~~~A~~~~~~~~~----~-------~~~~~~~li~~~~~~g~~~~a~~ 318 (600)
|++- +.++..+.++.... | ....|..++-.|.+-.+++.|..
T Consensus 273 YsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 273 YSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp HHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred HHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 8775 56666666655433 2 45578888888888888887754
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.19 E-value=1.7e-05 Score=75.12 Aligned_cols=144 Identities=8% Similarity=-0.023 Sum_probs=105.6
Q ss_pred CChHHHHHHHhcCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC----------------hhHHHHHHH
Q 007519 381 GVIDNAYNIFSNMV---SRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPN----------------SVTFLGILS 441 (600)
Q Consensus 381 ~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~----------------~~~~~~l~~ 441 (600)
+++++|...++... +.+...|..+...+...|++++|+..|++.... .|+ ...+..+..
T Consensus 127 ~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~~~~~~nla~ 204 (336)
T 1p5q_A 127 KSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSW--LEYESSFSNEEAQKAQALRLASHLNLAM 204 (336)
T ss_dssp EEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--TTTCCCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred eecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--hhccccCChHHHHHHHHHHHHHHHHHHH
Confidence 34444444444433 224456777778888888888888888888775 333 367788888
Q ss_pred HhcccCchHHHHHHHHHHHhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHhhhhCCH
Q 007519 442 ACSHAGLVSRGWELFNAMFDVYKIQP-GPEHYVSMINLLGRAGKIKEAEEFVLRLP-FEP-DHRIWGALLGACGFCEGNA 518 (600)
Q Consensus 442 ~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~g~~ 518 (600)
++...|++++|...++++.+. .| +...+..++.+|...|++++|...|++.. ..| +...+..+...+. ..|+.
T Consensus 205 ~~~~~g~~~~A~~~~~~al~~---~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~-~~~~~ 280 (336)
T 1p5q_A 205 CHLKLQAFSAAIESCNKALEL---DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQ-RIRRQ 280 (336)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHH-HHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HHHHH
Confidence 888999999999999998865 45 57788889999999999999999998864 445 4556666777777 88888
Q ss_pred HHH-HHHHHHHHh
Q 007519 519 EIA-EHAAKRLLE 530 (600)
Q Consensus 519 ~~a-~~~~~~~~~ 530 (600)
++| ...++++++
T Consensus 281 ~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 281 LAREKKLYANMFE 293 (336)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 887 456676665
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.17 E-value=2.1e-05 Score=62.42 Aligned_cols=86 Identities=15% Similarity=0.123 Sum_probs=38.9
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCh----hHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCCC----cchHHHHH
Q 007519 405 VMGFSHHGLANETLKVFESMLESGTHPNS----VTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPG----PEHYVSMI 476 (600)
Q Consensus 405 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~ 476 (600)
...+...|++++|...|+++.+. .|+. ..+..+..++...|++++|...++++.+. .|+ ...+..++
T Consensus 9 a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~~~~~la 83 (129)
T 2xev_A 9 AFDALKNGKYDDASQLFLSFLEL--YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSR---YPTHDKAAGGLLKLG 83 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTSTTHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHH--CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHH---CCCCcccHHHHHHHH
Confidence 34444455555555555554443 1221 23334444444555555555555554443 221 23344444
Q ss_pred HHHhhcCChHHHHHHHHhC
Q 007519 477 NLLGRAGKIKEAEEFVLRL 495 (600)
Q Consensus 477 ~~~~~~g~~~~A~~~~~~~ 495 (600)
.+|...|++++|.+.++++
T Consensus 84 ~~~~~~g~~~~A~~~~~~~ 102 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQV 102 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHH
Confidence 5555555555555554443
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.15 E-value=5.7e-06 Score=67.00 Aligned_cols=94 Identities=16% Similarity=-0.021 Sum_probs=78.3
Q ss_pred cchHHHHHHHHhhcCChHHHHHHHHhCC-CCCC-------------HHHHHHHHHHHhhhhCCHHHHHHHHHHHHhh---
Q 007519 469 PEHYVSMINLLGRAGKIKEAEEFVLRLP-FEPD-------------HRIWGALLGACGFCEGNAEIAEHAAKRLLEL--- 531 (600)
Q Consensus 469 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-------------~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~--- 531 (600)
...+...+..+.+.|++++|.+.|++.. ..|+ ...|.....++. ..|++++|+..+++++++
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~-~Lgr~~eAl~~~~kAL~l~n~ 89 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALA-GLRSFDEALHSADKALHYFNR 89 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhhhc
Confidence 3456667888899999999999998863 3333 237888888888 999999999999999999
Q ss_pred ----CCCCCCcH----HHHhHHHHhhCCcHHHHHHHHHHh
Q 007519 532 ----DPLNAPAH----VVLCNIYAASGRHVEEHKLRMDMG 563 (600)
Q Consensus 532 ----~p~~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~ 563 (600)
+|+++..| ...+.++...|++++|+..++...
T Consensus 90 ~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAl 129 (159)
T 2hr2_A 90 RGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVV 129 (159)
T ss_dssp HCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHH
Confidence 99999999 999999999999999999665543
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.15 E-value=2.4e-06 Score=66.83 Aligned_cols=92 Identities=11% Similarity=0.029 Sum_probs=59.5
Q ss_pred cCchHHHHHHHHHHHhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHhhhhCCHHHHH
Q 007519 446 AGLVSRGWELFNAMFDVYKIQP-GPEHYVSMINLLGRAGKIKEAEEFVLRLP-FEP-DHRIWGALLGACGFCEGNAEIAE 522 (600)
Q Consensus 446 ~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~g~~~~a~ 522 (600)
.|++++|+..|+++.+...-.| +...+..++.+|...|++++|.+.+++.. ..| +...+..+..++. ..|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~-~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLY-NLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHH-HcCCHHHHH
Confidence 4667777777777764210024 35667777777778888888887777754 334 3455666666666 788888888
Q ss_pred HHHHHHHhhCCCCCCc
Q 007519 523 HAAKRLLELDPLNAPA 538 (600)
Q Consensus 523 ~~~~~~~~~~p~~~~~ 538 (600)
..++++++..|+++..
T Consensus 82 ~~~~~al~~~p~~~~~ 97 (117)
T 3k9i_A 82 ELLLKIIAETSDDETI 97 (117)
T ss_dssp HHHHHHHHHHCCCHHH
T ss_pred HHHHHHHHhCCCcHHH
Confidence 8888888887766544
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.15 E-value=1.5e-06 Score=72.69 Aligned_cols=77 Identities=21% Similarity=0.073 Sum_probs=57.6
Q ss_pred cchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCC-CcHHHHhHH
Q 007519 469 PEHYVSMINLLGRAGKIKEAEEFVLRLP-FEP-DHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNA-PAHVVLCNI 545 (600)
Q Consensus 469 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~-~~~~~l~~~ 545 (600)
...|..++.+|.+.|++++|...+++.. ..| +...|..+..++. ..|++++|+..++++++++|+++ .+...+..+
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~-~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~ 141 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARI-AAWKLDEAEEDLKLLLRNHPAAASVVAREMKIV 141 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHH-HHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 4577788888888888888888887764 344 4567777777777 88999999999999999998766 444444444
Q ss_pred H
Q 007519 546 Y 546 (600)
Q Consensus 546 ~ 546 (600)
.
T Consensus 142 ~ 142 (162)
T 3rkv_A 142 T 142 (162)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.13 E-value=6.6e-06 Score=78.07 Aligned_cols=145 Identities=8% Similarity=-0.054 Sum_probs=79.2
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCCCcchHHHHHH
Q 007519 398 LVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMIN 477 (600)
Q Consensus 398 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 477 (600)
...+..+...+...|++++|+..|++.... .|+... +...|+.+++...+. ...|..++.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~-----------~~~~~nla~ 238 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK-----------NPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH-----------THHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH-----------HHHHHHHHH
Confidence 345666667777788888888888887763 454332 223344444332221 126788888
Q ss_pred HHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCCcHHHHhHHHH-hhCCcHH
Q 007519 478 LLGRAGKIKEAEEFVLRLP-FEP-DHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYA-ASGRHVE 554 (600)
Q Consensus 478 ~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~-~~g~~~~ 554 (600)
+|.+.|++++|...+++.. ..| +...+..+..++. ..|++++|+..++++++++|+++.++..+..+.. ..+..++
T Consensus 239 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~-~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~ 317 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKA-ELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQK 317 (338)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-TTTCHHHHHHHHHHTTC-------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999888864 444 5667788888888 8999999999999999999988888888887744 4466666
Q ss_pred HHHHHHHHh
Q 007519 555 EHKLRMDMG 563 (600)
Q Consensus 555 A~~~~~~~~ 563 (600)
+..+++.+-
T Consensus 318 a~~~~~~~l 326 (338)
T 2if4_A 318 QKEMYKGIF 326 (338)
T ss_dssp ---------
T ss_pred HHHHHHHhh
Confidence 666665554
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.13 E-value=1.5e-05 Score=78.73 Aligned_cols=161 Identities=8% Similarity=-0.090 Sum_probs=110.2
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCCh----hHHHHHHHHhcccCchHHHHHHHHHHHhhc---CCCC-Ccc
Q 007519 400 SWNSMVMGFSHHGLANETLKVFESMLESG-THPNS----VTFLGILSACSHAGLVSRGWELFNAMFDVY---KIQP-GPE 470 (600)
Q Consensus 400 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~p-~~~ 470 (600)
.+..++..|...|++++|.+.+..+...- ..++. ...+.+-..+...|+.+.+..+++...... +..+ -..
T Consensus 57 al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 136 (434)
T 4b4t_Q 57 SILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHS 136 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHH
Confidence 35667788888888888888888766531 11221 122333344566788899988888766431 2222 245
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHhCC-------CCCC-HHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCC--C-----
Q 007519 471 HYVSMINLLGRAGKIKEAEEFVLRLP-------FEPD-HRIWGALLGACGFCEGNAEIAEHAAKRLLELDPL--N----- 535 (600)
Q Consensus 471 ~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~p~-~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~--~----- 535 (600)
++..|+..|...|++++|..+++++. ..|. ..++...+..|. ..|++++|...+++++...+. +
T Consensus 137 ~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 215 (434)
T 4b4t_Q 137 LSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYH-KLRNLAKSKASLTAARTAANSIYCPTQTV 215 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHH-HhCcHHHHHHHHHHHHHHhhcCCCchHHH
Confidence 67788999999999999999887752 1222 346677777888 999999999999998875432 2
Q ss_pred CCcHHHHhHHHHhhCCcHHHHHHHHH
Q 007519 536 APAHVVLCNIYAASGRHVEEHKLRMD 561 (600)
Q Consensus 536 ~~~~~~l~~~~~~~g~~~~A~~~~~~ 561 (600)
...+..++..+...|++++|...+..
T Consensus 216 ~~~~~~~g~~~~~~~~y~~A~~~~~~ 241 (434)
T 4b4t_Q 216 AELDLMSGILHCEDKDYKTAFSYFFE 241 (434)
T ss_dssp HHHHHHHHHHTTSSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 14456777788888999999884433
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.12 E-value=6.2e-06 Score=65.64 Aligned_cols=93 Identities=10% Similarity=-0.044 Sum_probs=48.5
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCC-------CCcHHH
Q 007519 471 HYVSMINLLGRAGKIKEAEEFVLRLP--FEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLN-------APAHVV 541 (600)
Q Consensus 471 ~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~-------~~~~~~ 541 (600)
.+..++..+...|++++|...+++.. .+.+...+..+...+. ..|++++|+..++++++..|++ +.++..
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYF-EKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHH-HhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 34444555555555555555555432 1223344444444454 5566666666666665555433 445555
Q ss_pred HhHHHHhhCCcHHHHHHHHHHhh
Q 007519 542 LCNIYAASGRHVEEHKLRMDMGL 564 (600)
Q Consensus 542 l~~~~~~~g~~~~A~~~~~~~~~ 564 (600)
++.++...|++++|.+.++...+
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHH
Confidence 56666666666666665544433
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.12 E-value=8.4e-06 Score=64.84 Aligned_cols=105 Identities=8% Similarity=0.002 Sum_probs=57.0
Q ss_pred HHHHHhcccCchHHHHHHHHHHHhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhCC-C----CCC----HHHHHHH
Q 007519 438 GILSACSHAGLVSRGWELFNAMFDVYKIQP-GPEHYVSMINLLGRAGKIKEAEEFVLRLP-F----EPD----HRIWGAL 507 (600)
Q Consensus 438 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~----~p~----~~~~~~l 507 (600)
.+...+...|++++|...++++.+. .| +...+..++..|...|++++|...+++.. . .++ ...+..+
T Consensus 9 ~l~~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (131)
T 1elr_A 9 ELGNDAYKKKDFDTALKHYDKAKEL---DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHhc---CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHH
Confidence 3344444445555555555554432 22 34444555555555555555555554432 1 111 4455556
Q ss_pred HHHHhhhhCCHHHHHHHHHHHHhhCCCCCCcHHHHhHHHH
Q 007519 508 LGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYA 547 (600)
Q Consensus 508 ~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 547 (600)
...+. ..|++++|+..++++++..| ++.....+..+..
T Consensus 86 a~~~~-~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~ 123 (131)
T 1elr_A 86 GNSYF-KEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEK 123 (131)
T ss_dssp HHHHH-HTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHH
T ss_pred HHHHH-HhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHH
Confidence 66666 77777777777777777777 5555555555443
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.11 E-value=5.7e-06 Score=71.78 Aligned_cols=145 Identities=8% Similarity=-0.026 Sum_probs=81.7
Q ss_pred HHHhcccchhhhHHHHHHHhhhcCCCchhHHHHHHHHHHhcCChHHHHHHHhcCC---CCCh----------------hh
Q 007519 340 GAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMV---SRDL----------------VS 400 (600)
Q Consensus 340 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~----------------~~ 400 (600)
......++++.+.+.+....+... .....+..+...+...|++++|...|++.. +.+. ..
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (198)
T 2fbn_A 12 SGRENLYFQGAKKSIYDYTDEEKV-QSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISC 90 (198)
T ss_dssp ----------CCCSGGGCCHHHHH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHH
T ss_pred hhhhhhhhccccCchhhCCHHHHH-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHH
Confidence 344556677777777663322211 134456677888999999999999999875 2232 45
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCC-CcchHHHHHHHH
Q 007519 401 WNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQP-GPEHYVSMINLL 479 (600)
Q Consensus 401 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~ 479 (600)
|..+..++...|++++|+..+++..... +.+...+..+..++...|++++|...|+++.+. .| +...+..+..++
T Consensus 91 ~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~ 166 (198)
T 2fbn_A 91 NLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASL---NPNNLDIRNSYELCV 166 (198)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH---CCCcHHHHHHHHHHH
Confidence 5666666666677777777666666542 334455555566666666666666666666543 34 344555555555
Q ss_pred hhcCChHHHH
Q 007519 480 GRAGKIKEAE 489 (600)
Q Consensus 480 ~~~g~~~~A~ 489 (600)
...|+.+++.
T Consensus 167 ~~~~~~~~~~ 176 (198)
T 2fbn_A 167 NKLKEARKKD 176 (198)
T ss_dssp HHHHHHHC--
T ss_pred HHHHHHHHHH
Confidence 5555444444
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.10 E-value=6e-05 Score=74.46 Aligned_cols=153 Identities=5% Similarity=-0.088 Sum_probs=73.5
Q ss_pred HHHHHhcCChHHHHHHHhhCCC--C---C---------------hhhHHHHHHHHHhCCChhHHHHHHHHHHHCC-CCCC
Q 007519 273 IDGYLSVGQVSNAYYLFHNMPD--R---D---------------AVAWTAMISGLVQNELFVEATYLFMEMRAHG-VPPL 331 (600)
Q Consensus 273 ~~~~~~~~~~~~A~~~~~~~~~--~---~---------------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~ 331 (600)
...+.+.|++++|++.|..+.+ + + ..++..+...|...|++++|.+.+..+.+.- ..++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 4456667777777777766533 1 0 0125566667777777777777776654421 1111
Q ss_pred hhH---HH-HHHHHHhcccchhhhHHHHHHHhhh----cCCC-chhHHHHHHHHHHhcCChHHHHHHHhcCC----C---
Q 007519 332 NAT---FS-VLFGAAGATANIDLGRQIHCVLMKT----ESES-DLILENCLISMYAKCGVIDNAYNIFSNMV----S--- 395 (600)
Q Consensus 332 ~~~---~~-~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~--- 395 (600)
..+ .. .+-..+...|+.+.+..++...... +..+ -..++..+...|...|++++|..+++++. .
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 111 11 1122233445556665555543321 1111 12334445555555555555555554432 0
Q ss_pred --CChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 007519 396 --RDLVSWNSMVMGFSHHGLANETLKVFESML 425 (600)
Q Consensus 396 --~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 425 (600)
....++..++..|...|++++|..++++..
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 202 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAAR 202 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 012344444455555555555555555443
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.09 E-value=7e-06 Score=68.48 Aligned_cols=94 Identities=14% Similarity=-0.045 Sum_probs=70.6
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHhCC-C------------------CCC-HHHHHHHHHHHhhhhCCHHHHHHHHHHHHh
Q 007519 471 HYVSMINLLGRAGKIKEAEEFVLRLP-F------------------EPD-HRIWGALLGACGFCEGNAEIAEHAAKRLLE 530 (600)
Q Consensus 471 ~~~~l~~~~~~~g~~~~A~~~~~~~~-~------------------~p~-~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~ 530 (600)
.+...+..+.+.|++++|.+.|++.. . .|. ...+..+..++. ..|++++|+..++++++
T Consensus 13 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~-~~~~~~~A~~~~~~al~ 91 (162)
T 3rkv_A 13 ALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYL-NIGDLHEAEETSSEVLK 91 (162)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHh
Confidence 34445555555555555555554432 1 222 346677777777 99999999999999999
Q ss_pred hCCCCCCcHHHHhHHHHhhCCcHHHHHHHHHHhhc
Q 007519 531 LDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLK 565 (600)
Q Consensus 531 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 565 (600)
++|+++.+|..++.+|...|++++|...++...+.
T Consensus 92 ~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 92 REETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 99999999999999999999999999977665543
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.07 E-value=6.6e-06 Score=82.03 Aligned_cols=115 Identities=10% Similarity=0.096 Sum_probs=57.6
Q ss_pred HHHHhcCChHHHHHHHhcCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccCchHH
Q 007519 375 SMYAKCGVIDNAYNIFSNMV---SRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSR 451 (600)
Q Consensus 375 ~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~ 451 (600)
..+.+.|++++|...|++.. +.+...|..+..++.+.|++++|++.+++..+.. +.+...+..+..++...|++++
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~e 92 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRA 92 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 34455566666666665543 3345555555556666666666666666555531 2233445555555555566666
Q ss_pred HHHHHHHHHhhcCCCC-CcchHHHHHHH--HhhcCChHHHHHHHH
Q 007519 452 GWELFNAMFDVYKIQP-GPEHYVSMINL--LGRAGKIKEAEEFVL 493 (600)
Q Consensus 452 a~~~~~~~~~~~~~~p-~~~~~~~l~~~--~~~~g~~~~A~~~~~ 493 (600)
|.+.++++.+. .| +...+..+..+ +.+.|++++|.+.++
T Consensus 93 A~~~~~~al~~---~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 93 ALRDYETVVKV---KPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHH---STTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 66666555543 23 23334444433 455555555555555
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.06 E-value=2.3e-06 Score=66.89 Aligned_cols=83 Identities=14% Similarity=0.041 Sum_probs=66.9
Q ss_pred hcCChHHHHHHHHhCC-C---CCC-HHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCCcHHHHhHHHHhhCCcHHH
Q 007519 481 RAGKIKEAEEFVLRLP-F---EPD-HRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEE 555 (600)
Q Consensus 481 ~~g~~~~A~~~~~~~~-~---~p~-~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 555 (600)
..|++++|+..+++.. . .|+ ...+..+...+. ..|++++|+..++++++..|+++.++..++.++...|++++|
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFR-TLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHH
Confidence 4688899999998864 4 354 346677777788 999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhh
Q 007519 556 HKLRMDMGL 564 (600)
Q Consensus 556 ~~~~~~~~~ 564 (600)
...++...+
T Consensus 81 ~~~~~~al~ 89 (117)
T 3k9i_A 81 VELLLKIIA 89 (117)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 996665543
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.05 E-value=7e-06 Score=68.20 Aligned_cols=91 Identities=19% Similarity=0.096 Sum_probs=48.2
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHhCC----CCCC----HHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCC------CC
Q 007519 471 HYVSMINLLGRAGKIKEAEEFVLRLP----FEPD----HRIWGALLGACGFCEGNAEIAEHAAKRLLELDPL------NA 536 (600)
Q Consensus 471 ~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~----~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~------~~ 536 (600)
++..++..+...|++++|.+.+++.. ..++ ...+..+...+. ..|++++|+..++++++..+. ..
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 129 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYT-LLQDYEKAIDYHLKHLAIAQELKDRIGEG 129 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHHHHHccchHhHH
Confidence 34444555555555555555544431 0011 223444444555 666666666666666654221 12
Q ss_pred CcHHHHhHHHHhhCCcHHHHHHHHHH
Q 007519 537 PAHVVLCNIYAASGRHVEEHKLRMDM 562 (600)
Q Consensus 537 ~~~~~l~~~~~~~g~~~~A~~~~~~~ 562 (600)
.++..++.++...|++++|.+.++..
T Consensus 130 ~~~~~la~~~~~~g~~~~A~~~~~~a 155 (164)
T 3ro3_A 130 RACWSLGNAYTALGNHDQAMHFAEKH 155 (164)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 45666677777777777777755443
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.04 E-value=1.3e-05 Score=76.04 Aligned_cols=150 Identities=11% Similarity=0.044 Sum_probs=81.9
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhcCC--CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhc
Q 007519 367 LILENCLISMYAKCGVIDNAYNIFSNMV--SRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACS 444 (600)
Q Consensus 367 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~ 444 (600)
...+..+...+.+.|++++|...|++.. .|+.. .+...|+.+++...+. ...|..+..++.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~-------~~~~~~~~~~~~~~l~----------~~~~~nla~~~~ 241 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF-------MFQLYGKYQDMALAVK----------NPCHLNIAACLI 241 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHH-------HHTCCHHHHHHHHHHH----------THHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccch-------hhhhcccHHHHHHHHH----------HHHHHHHHHHHH
Confidence 4456677888899999999999999876 23222 1222333344333221 136777888899
Q ss_pred ccCchHHHHHHHHHHHhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhCC-CCCCHH-HHHHHHHHHhhhhCCHHHH
Q 007519 445 HAGLVSRGWELFNAMFDVYKIQP-GPEHYVSMINLLGRAGKIKEAEEFVLRLP-FEPDHR-IWGALLGACGFCEGNAEIA 521 (600)
Q Consensus 445 ~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~-~~~~l~~~~~~~~g~~~~a 521 (600)
+.|++++|...++++.+. .| +...+..++.+|...|++++|.+.|++.. ..|+.. .+..+........+..+.+
T Consensus 242 ~~g~~~~A~~~~~~al~~---~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 242 KLKRYDEAIGHCNIVLTE---EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp TTTCCHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999865 56 57789999999999999999999999975 666544 3444443323245677888
Q ss_pred HHHHHHHHhhCCCCC
Q 007519 522 EHAAKRLLELDPLNA 536 (600)
Q Consensus 522 ~~~~~~~~~~~p~~~ 536 (600)
...|+++++..|+++
T Consensus 319 ~~~~~~~l~~~p~~~ 333 (338)
T 2if4_A 319 KEMYKGIFKGKDEGG 333 (338)
T ss_dssp ---------------
T ss_pred HHHHHHhhCCCCCCC
Confidence 899999999988654
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.02 E-value=1.7e-05 Score=65.81 Aligned_cols=133 Identities=16% Similarity=0.119 Sum_probs=81.6
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CCh----hHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCCC----cc
Q 007519 400 SWNSMVMGFSHHGLANETLKVFESMLESGTH-PNS----VTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPG----PE 470 (600)
Q Consensus 400 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~ 470 (600)
++..+...+...|++++|+..+++..+.... ++. .++..+...+...|++++|.+.++++.+...-.++ ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 3455555666666666666666665543100 111 24555666667777777777777766543111111 44
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHhCC----CCCC----HHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCC
Q 007519 471 HYVSMINLLGRAGKIKEAEEFVLRLP----FEPD----HRIWGALLGACGFCEGNAEIAEHAAKRLLELDP 533 (600)
Q Consensus 471 ~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~----~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p 533 (600)
.+..++..+...|++++|.+.+++.. ..++ ...+..+...+. ..|++++|+..+++++++..
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~a~~~~~ 160 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYT-ALGNHDQAMHFAEKHLEISR 160 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHH-HccCHHHHHHHHHHHHHHHH
Confidence 56677788888888888888776642 1111 234555666666 88999999999998887543
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.01 E-value=7.4e-06 Score=63.07 Aligned_cols=91 Identities=16% Similarity=-0.058 Sum_probs=73.2
Q ss_pred CcchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCC------CCcH
Q 007519 468 GPEHYVSMINLLGRAGKIKEAEEFVLRLP-FEP-DHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLN------APAH 539 (600)
Q Consensus 468 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~ 539 (600)
+...+..++..+...|++++|.+.+++.. ..| +...+..+..++. ..|++++|+..+++++++.|++ +..+
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 81 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALI-KLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQ 81 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHhCCCccHHHHHHHHH
Confidence 34567778888889999999999888864 344 5667777777888 9999999999999999999987 6777
Q ss_pred HHHhHHHHhhCCcHHHHHHH
Q 007519 540 VVLCNIYAASGRHVEEHKLR 559 (600)
Q Consensus 540 ~~l~~~~~~~g~~~~A~~~~ 559 (600)
..++.++...|++++|.+.+
T Consensus 82 ~~~~~~~~~~~~~~~a~~~~ 101 (111)
T 2l6j_A 82 YRLELAQGAVGSVQIPVVEV 101 (111)
T ss_dssp HHHHHHHHHHHCCCCCSSSS
T ss_pred HHHHHHHHHHHhHhhhHhHH
Confidence 88888888888877776544
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.95 E-value=3.1e-05 Score=76.67 Aligned_cols=123 Identities=9% Similarity=-0.017 Sum_probs=95.9
Q ss_pred hcccCchHHHHHHHHHHHhhcC--CCCC----cchHHHHHHHHhhcCChHHHHHHHHhCC---------CCCCH-HHHHH
Q 007519 443 CSHAGLVSRGWELFNAMFDVYK--IQPG----PEHYVSMINLLGRAGKIKEAEEFVLRLP---------FEPDH-RIWGA 506 (600)
Q Consensus 443 ~~~~g~~~~a~~~~~~~~~~~~--~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~---------~~p~~-~~~~~ 506 (600)
+...|++++|..++++..+... +.|+ ..+++.|+.+|...|++++|+.++++.. ..|+. .+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 4567889999888887765422 2222 5678899999999999999999887752 34443 46788
Q ss_pred HHHHHhhhhCCHHHHHHHHHHHHh-----hCCCCCCc---HHHHhHHHHhhCCcHHHHHHHHHHhhcC
Q 007519 507 LLGACGFCEGNAEIAEHAAKRLLE-----LDPLNAPA---HVVLCNIYAASGRHVEEHKLRMDMGLKG 566 (600)
Q Consensus 507 l~~~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 566 (600)
+...+. .+|++++|+.+++++++ +.|++|.+ ...+..++...|.+++|..++..+++..
T Consensus 399 La~~~~-~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 399 AGLTNW-HAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHH-HTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-HCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888 99999999999999988 67877654 4577888889999999999888887644
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.91 E-value=3.1e-05 Score=56.91 Aligned_cols=81 Identities=28% Similarity=0.339 Sum_probs=64.3
Q ss_pred cchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCCcHHHHhHHH
Q 007519 469 PEHYVSMINLLGRAGKIKEAEEFVLRLP-FEP-DHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIY 546 (600)
Q Consensus 469 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 546 (600)
...+..++..+...|++++|.+.+++.. ..| +...+..+...+. ..|++++|+..++++++++|+++..+..++.++
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 87 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY-KQGDYDEAIEYYQKALELDPNNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-HHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 4567777888888888888888887753 333 4566777777777 899999999999999999998888888888888
Q ss_pred HhhC
Q 007519 547 AASG 550 (600)
Q Consensus 547 ~~~g 550 (600)
...|
T Consensus 88 ~~~g 91 (91)
T 1na3_A 88 QKQG 91 (91)
T ss_dssp HHHC
T ss_pred HhcC
Confidence 7654
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.82 E-value=7.4e-05 Score=56.13 Aligned_cols=61 Identities=20% Similarity=0.015 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCCcHHHHhHHHHhhCCcHHHHHHHHHH
Q 007519 501 HRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDM 562 (600)
Q Consensus 501 ~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 562 (600)
...+..+...+. ..|++++|+..++++++++|+++.++..++.+|...|++++|.+.++..
T Consensus 7 ~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 67 (100)
T 3ma5_A 7 PFTRYALAQEHL-KHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQG 67 (100)
T ss_dssp HHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 444555555555 6666666666666666666666666666666666666666666644433
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.77 E-value=0.00019 Score=71.21 Aligned_cols=125 Identities=11% Similarity=0.105 Sum_probs=86.5
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhcCC---CCC---------------hhhHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 007519 367 LILENCLISMYAKCGVIDNAYNIFSNMV---SRD---------------LVSWNSMVMGFSHHGLANETLKVFESMLESG 428 (600)
Q Consensus 367 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~---------------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 428 (600)
...+..+...+.+.|++++|...|++.. +.+ ...|..+..+|.+.|++++|+..+++..+..
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 347 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 347 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 3455667777888888888888888765 222 4667777777888888888888888877753
Q ss_pred CCCChhHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCC-CcchHHHHHHHHhhcCChHHHHH-HHHhC
Q 007519 429 THPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQP-GPEHYVSMINLLGRAGKIKEAEE-FVLRL 495 (600)
Q Consensus 429 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~-~~~~~ 495 (600)
+.+...+..+..+|...|++++|...|+++.+ +.| +...+..+..++.+.|+.++|.+ .+.+|
T Consensus 348 -p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~---l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~ 412 (457)
T 1kt0_A 348 -SANEKGLYRRGEAQLLMNEFESAKGDFEKVLE---VNPQNKAARLQISMCQKKAKEHNERDRRIYANM 412 (457)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT---TC----CHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred -CccHHHHHHHHHHHHHccCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677777777788888888888887764 355 46677777777777777776653 34444
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.70 E-value=3.7e-05 Score=62.09 Aligned_cols=108 Identities=11% Similarity=0.045 Sum_probs=59.9
Q ss_pred CchHHHHHHHHHHHhhcCCCC-CcchHHHHHHHHhhcCCh----------HHHHHHHHhCC-CCC-CHHHHHHHHHHHhh
Q 007519 447 GLVSRGWELFNAMFDVYKIQP-GPEHYVSMINLLGRAGKI----------KEAEEFVLRLP-FEP-DHRIWGALLGACGF 513 (600)
Q Consensus 447 g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~----------~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~ 513 (600)
+.+++|.+.+++..+. .| +...|..++.++...|++ ++|+..|++.. +.| +...|..+..++.
T Consensus 16 ~~feeA~~~~~~Ai~l---~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~- 91 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKS---NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYT- 91 (158)
T ss_dssp HHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-
T ss_pred hHHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHH-
Confidence 4455555555555533 34 344555555555554432 35555555543 334 3345555555554
Q ss_pred hh-----------CCHHHHHHHHHHHHhhCCCCCCcHHHHhHHHHhhCCcHHHHHHHHHHhhc
Q 007519 514 CE-----------GNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLK 565 (600)
Q Consensus 514 ~~-----------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 565 (600)
.. |++++|+..|+++++++|++. .|...+ ...++|.++.-.+...
T Consensus 92 ~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~-~y~~al------~~~~ka~el~~~~~~~ 147 (158)
T 1zu2_A 92 SFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNT-HYLKSL------EMTAKAPQLHAEAYKQ 147 (158)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCH-HHHHHH------HHHHTHHHHHHHHHHS
T ss_pred HhcccCcchhhhhccHHHHHHHHHHHHHhCCCCH-HHHHHH------HHHHhCHhccCccccc
Confidence 43 589999999999999999653 222222 2335555555554444
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.68 E-value=7e-05 Score=57.98 Aligned_cols=80 Identities=15% Similarity=0.042 Sum_probs=59.8
Q ss_pred HHHHHHHHHHhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHhhhhCCHHHHHHHHHH
Q 007519 451 RGWELFNAMFDVYKIQP-GPEHYVSMINLLGRAGKIKEAEEFVLRLP-FEP-DHRIWGALLGACGFCEGNAEIAEHAAKR 527 (600)
Q Consensus 451 ~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~g~~~~a~~~~~~ 527 (600)
.|.+.++++.+ ..| +...+..++..|...|++++|.+.+++.. ..| +...|..+..++. ..|++++|+..+++
T Consensus 3 ~a~~~~~~al~---~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~g~~~~A~~~~~~ 78 (115)
T 2kat_A 3 AITERLEAMLA---QGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQ-GQGDRAGARQAWES 78 (115)
T ss_dssp CHHHHHHHHHT---TTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHH---hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHH-HcCCHHHHHHHHHH
Confidence 56677777764 345 56778888888888888888888887764 334 4566777777777 88888888888888
Q ss_pred HHhhCCC
Q 007519 528 LLELDPL 534 (600)
Q Consensus 528 ~~~~~p~ 534 (600)
++++.|.
T Consensus 79 al~~~~~ 85 (115)
T 2kat_A 79 GLAAAQS 85 (115)
T ss_dssp HHHHHHH
T ss_pred HHHhccc
Confidence 8887773
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.67 E-value=0.0002 Score=57.50 Aligned_cols=109 Identities=6% Similarity=-0.050 Sum_probs=48.6
Q ss_pred ChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCCCcchHHHHHHHHhh----cCChHHH
Q 007519 413 LANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGR----AGKIKEA 488 (600)
Q Consensus 413 ~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A 488 (600)
++++|++.|++..+.| .|+.. +...|...+.+++|.++|++..+. -++..+..|...|.. .+++++|
T Consensus 10 d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred CHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCccHHHH
Confidence 3455555555555544 22222 334444444555555555555442 233444444444444 4444555
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHhhh----hCCHHHHHHHHHHHHhh
Q 007519 489 EEFVLRLPFEPDHRIWGALLGACGFC----EGNAEIAEHAAKRLLEL 531 (600)
Q Consensus 489 ~~~~~~~~~~p~~~~~~~l~~~~~~~----~g~~~~a~~~~~~~~~~ 531 (600)
.+++++.-..-+......+...+. . .+|.++|+..++++.+.
T Consensus 81 ~~~~~~Aa~~g~~~a~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 81 AQYYSKACGLNDQDGCLILGYKQY-AGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH-HTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHH-CCCCCCcCHHHHHHHHHHHHHC
Confidence 544444332233333344444333 3 34444444444444443
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.62 E-value=3.9e-05 Score=61.98 Aligned_cols=86 Identities=13% Similarity=-0.019 Sum_probs=69.5
Q ss_pred HhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHhhhhCC----------HHHHHHHHHHHHhhCCCCCCcHHHHhHHH
Q 007519 479 LGRAGKIKEAEEFVLRLP-FEP-DHRIWGALLGACGFCEGN----------AEIAEHAAKRLLELDPLNAPAHVVLCNIY 546 (600)
Q Consensus 479 ~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~g~----------~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 546 (600)
..+.+.+++|.+.+++.. ..| +...|..+..++. ..++ +++|+..|+++++++|+++.+|..++.+|
T Consensus 12 ~~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~-~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay 90 (158)
T 1zu2_A 12 FDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLL-ELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHH
Confidence 346677899999888864 445 5677777777776 6665 46999999999999999999999999999
Q ss_pred HhhC-----------CcHHHHHHHHHHhhc
Q 007519 547 AASG-----------RHVEEHKLRMDMGLK 565 (600)
Q Consensus 547 ~~~g-----------~~~~A~~~~~~~~~~ 565 (600)
...| ++++|.+.++...+.
T Consensus 91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l 120 (158)
T 1zu2_A 91 TSFAFLTPDETEAKHNFDLATQFFQQAVDE 120 (158)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcccCcchhhhhccHHHHHHHHHHHHHh
Confidence 9875 899999977665544
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.61 E-value=0.00022 Score=52.29 Aligned_cols=69 Identities=14% Similarity=-0.028 Sum_probs=52.8
Q ss_pred CCHHHHHHHHHHHhhhhCC---HHHHHHHHHHHHhhCCCCCCcHHHHhHHHHhhCCcHHHHHHHHHHhhcCCc
Q 007519 499 PDHRIWGALLGACGFCEGN---AEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVR 568 (600)
Q Consensus 499 p~~~~~~~l~~~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 568 (600)
+++..+..+..++. ..++ .++|..+++++++++|+++.+...++..+.+.|++++|+..|+.+.+....
T Consensus 4 ~~~~~~~~~a~al~-~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 4 VTATQLAAKATTLY-YLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCHHHHHHHHHHHH-HTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCHHHHHHHHHHHH-HhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 45556666666654 3333 688888888888888888888888888888888888888888888776554
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.60 E-value=0.00012 Score=56.64 Aligned_cols=76 Identities=14% Similarity=0.092 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHcCCCCChhHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHh
Q 007519 416 ETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQP-GPEHYVSMINLLGRAGKIKEAEEFVLR 494 (600)
Q Consensus 416 ~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 494 (600)
+|+..|++..+.. +.+...+..+..++...|++++|...++++.+. .| +...+..++.+|...|++++|...+++
T Consensus 3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 78 (115)
T 2kat_A 3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDF---DPTYSVAWKWLGKTLQGQGDRAGARQAWES 78 (115)
T ss_dssp CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4555666655431 233445555556666666666666666666643 33 345566666666666666666666655
Q ss_pred C
Q 007519 495 L 495 (600)
Q Consensus 495 ~ 495 (600)
.
T Consensus 79 a 79 (115)
T 2kat_A 79 G 79 (115)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.59 E-value=6.5e-05 Score=57.59 Aligned_cols=94 Identities=12% Similarity=0.116 Sum_probs=60.4
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCCC-------cc
Q 007519 398 LVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPG-------PE 470 (600)
Q Consensus 398 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-------~~ 470 (600)
...|..+...+...|++++|+..|++..+.. +.+...+..+..++...|++++|.+.++++.+ ..|+ ..
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~~~ 79 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLR---YTSTAEHVAIRSK 79 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT---SCSSTTSHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH---hCCCccHHHHHHH
Confidence 4456666777777777777777777777642 33456666666777777777777777777764 3453 34
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHhC
Q 007519 471 HYVSMINLLGRAGKIKEAEEFVLRL 495 (600)
Q Consensus 471 ~~~~l~~~~~~~g~~~~A~~~~~~~ 495 (600)
.+..++.++...|++++|.+.++++
T Consensus 80 ~~~~~~~~~~~~~~~~~a~~~~~~~ 104 (111)
T 2l6j_A 80 LQYRLELAQGAVGSVQIPVVEVDEL 104 (111)
T ss_dssp HHHHHHHHHHHHHCCCCCSSSSSSC
T ss_pred HHHHHHHHHHHHHhHhhhHhHHHHh
Confidence 4555566666666665555555444
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.58 E-value=0.00029 Score=67.47 Aligned_cols=115 Identities=7% Similarity=-0.002 Sum_probs=56.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHhcCCC-------------------CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 007519 370 ENCLISMYAKCGVIDNAYNIFSNMVS-------------------RDLVSWNSMVMGFSHHGLANETLKVFESMLESGTH 430 (600)
Q Consensus 370 ~~~l~~~~~~~~~~~~A~~~~~~~~~-------------------~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~ 430 (600)
+..+...+.+.|++++|...|++... .+...|..+..++.+.|++++|+..+++..+.. +
T Consensus 226 ~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p 304 (370)
T 1ihg_A 226 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID-P 304 (370)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-T
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-c
Confidence 45566677777888888777765542 122344444444555555555555555544421 1
Q ss_pred CChhHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCC-CcchHHHHHHHHhhcCChHHH
Q 007519 431 PNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQP-GPEHYVSMINLLGRAGKIKEA 488 (600)
Q Consensus 431 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A 488 (600)
.+...+..+..++...|++++|.+.|+++.+. .| +...+..+..++...++.+++
T Consensus 305 ~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l---~P~~~~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 305 SNTKALYRRAQGWQGLKEYDQALADLKKAQEI---APEDKAIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHHHHH
Confidence 22334444444444555555555555544432 23 233344444444444444433
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.48 E-value=0.002 Score=65.38 Aligned_cols=147 Identities=12% Similarity=0.082 Sum_probs=116.0
Q ss_pred cCChHHHHHHHHHHHHcCCCCCh-hHHHHHHHHhcccCc----------hHHHHHHHHHHHhhcCCCC-CcchHHHHHHH
Q 007519 411 HGLANETLKVFESMLESGTHPNS-VTFLGILSACSHAGL----------VSRGWELFNAMFDVYKIQP-GPEHYVSMINL 478 (600)
Q Consensus 411 ~~~~~~a~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~----------~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~ 478 (600)
....++|++.++++... .|+. ..|+.--.++...|+ ++++.+.++.+.+. .| +..+|..-..+
T Consensus 42 ~~~~eeal~~~~~~l~~--nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~---~pK~y~aW~hR~w~ 116 (567)
T 1dce_A 42 GELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV---NPKSYGTWHHRCWL 116 (567)
T ss_dssp TCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh---CCCCHHHHHHHHHH
Confidence 34456889999999985 5655 445444445555565 89999999999875 56 57789888999
Q ss_pred HhhcC--ChHHHHHHHHhCC-CC-CCHHHHHHHHHHHhhhhC-CHHHHHHHHHHHHhhCCCCCCcHHHHhHHHHhh----
Q 007519 479 LGRAG--KIKEAEEFVLRLP-FE-PDHRIWGALLGACGFCEG-NAEIAEHAAKRLLELDPLNAPAHVVLCNIYAAS---- 549 (600)
Q Consensus 479 ~~~~g--~~~~A~~~~~~~~-~~-p~~~~~~~l~~~~~~~~g-~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~---- 549 (600)
+.+.| +++++++.++++. .. -+...|+.-..... ..| .++++++.++++++.+|.|..+|...+.++.+.
T Consensus 117 l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~-~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~ 195 (567)
T 1dce_A 117 LSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAA-QAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQP 195 (567)
T ss_dssp HHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCC
T ss_pred HHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHH-HcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccc
Confidence 99999 7799999999985 34 46788888888877 788 899999999999999999999999999998875
Q ss_pred ----------CCcHHHHHHHHHHh
Q 007519 550 ----------GRHVEEHKLRMDMG 563 (600)
Q Consensus 550 ----------g~~~~A~~~~~~~~ 563 (600)
+.++++.+.++...
T Consensus 196 ~~~~~~~~~~~~~~eel~~~~~ai 219 (567)
T 1dce_A 196 DSGPQGRLPENVLLKELELVQNAF 219 (567)
T ss_dssp CSSSCCSSCHHHHHHHHHHHHHHH
T ss_pred cccccccccHHHHHHHHHHHHHHH
Confidence 45677777554433
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.47 E-value=0.0017 Score=52.02 Aligned_cols=113 Identities=6% Similarity=-0.105 Sum_probs=91.1
Q ss_pred cCchHHHHHHHHHHHhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHhhh----hCCHHHH
Q 007519 446 AGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFC----EGNAEIA 521 (600)
Q Consensus 446 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~----~g~~~~a 521 (600)
.+++++|.++|++..+. + .|+ .. |...|...+.+++|.+.+++.-...+......+...+. . .+|.++|
T Consensus 8 ~~d~~~A~~~~~~aa~~-g-~~~--a~--lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~-~G~g~~~d~~~A 80 (138)
T 1klx_A 8 KKDLKKAIQYYVKACEL-N-EMF--GC--LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYE-NGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHHT-T-CTT--HH--HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HCSSSCCCHHHH
T ss_pred ccCHHHHHHHHHHHHcC-C-CHh--hh--HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHH-cCCCCCccHHHH
Confidence 45788999999998875 3 233 33 88888888889999999988754567777777777777 6 7899999
Q ss_pred HHHHHHHHhhCCCCCCcHHHHhHHHHh----hCCcHHHHHHHHHHhhcCC
Q 007519 522 EHAAKRLLELDPLNAPAHVVLCNIYAA----SGRHVEEHKLRMDMGLKGV 567 (600)
Q Consensus 522 ~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~ 567 (600)
+..++++.+. .++..+..|+.+|.. .+++++|.++++...+.|.
T Consensus 81 ~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 81 AQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 9999999876 478889999999998 8999999998887777664
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.39 E-value=0.00069 Score=67.06 Aligned_cols=131 Identities=8% Similarity=-0.074 Sum_probs=73.3
Q ss_pred HHHhcCChhHHHHHHHHHHhhhcCCCCCC----hhhHHHHHHHHHhcCChhhHHHHhcccCCCCchhHHHHHHHHHhcCC
Q 007519 206 GFAWNGFHKESLLLFIEMKGICDNGNNCN----VQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQ 281 (600)
Q Consensus 206 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~ 281 (600)
.+..+|++++|+.++++.++....-..|+ ..+++.|..+|...|++++|+.++++..
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL------------------- 378 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMV------------------- 378 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-------------------
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH-------------------
Confidence 35567889999888888876633333332 4567788888888888888887776543
Q ss_pred hHHHHHHHhhCCCC---C-hhhHHHHHHHHHhCCChhHHHHHHHHHHHC-----C-CCCChh-HHHHHHHHHhcccchhh
Q 007519 282 VSNAYYLFHNMPDR---D-AVAWTAMISGLVQNELFVEATYLFMEMRAH-----G-VPPLNA-TFSVLFGAAGATANIDL 350 (600)
Q Consensus 282 ~~~A~~~~~~~~~~---~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----g-~~p~~~-~~~~l~~~~~~~~~~~~ 350 (600)
.++.....+ + ..+++.|...|...|++++|+.++++..+. | -.|+.. +...+-.++...+...+
T Consensus 379 -----~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ 453 (490)
T 3n71_A 379 -----DGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQ 453 (490)
T ss_dssp -----HHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----HHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHH
Confidence 222222221 1 135566666666666666666666655431 2 112222 22223334444555555
Q ss_pred hHHHHHHHhh
Q 007519 351 GRQIHCVLMK 360 (600)
Q Consensus 351 a~~~~~~~~~ 360 (600)
|..++..+.+
T Consensus 454 ae~~~~~~~~ 463 (490)
T 3n71_A 454 NEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555554433
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.29 E-value=0.0057 Score=56.95 Aligned_cols=135 Identities=12% Similarity=-0.019 Sum_probs=73.4
Q ss_pred CCChhhHHHHHHHHH--hcC---ChHHHHHHHHHHHHcCCCCCh-hHHHHHHHHhcc---c-----CchHHHHHHHHHHH
Q 007519 395 SRDLVSWNSMVMGFS--HHG---LANETLKVFESMLESGTHPNS-VTFLGILSACSH---A-----GLVSRGWELFNAMF 460 (600)
Q Consensus 395 ~~~~~~~~~l~~~~~--~~~---~~~~a~~~~~~m~~~~~~p~~-~~~~~l~~~~~~---~-----g~~~~a~~~~~~~~ 460 (600)
+.+...|...+.+.. ..+ +..+|..+|++..+. .|+. ..+..+..++.. . .......+.++...
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~ 268 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIV 268 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHH
Confidence 456677777766543 223 346788888888874 5653 333333333320 0 01111111222111
Q ss_pred hhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhCC-CCCCHHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCC
Q 007519 461 DVYKIQP-GPEHYVSMINLLGRAGKIKEAEEFVLRLP-FEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDP 533 (600)
Q Consensus 461 ~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p 533 (600)
.. ...| ++.++..+...+...|++++|...++++. ..|+...|..+...+. -.|+.++|+..+++++.++|
T Consensus 269 a~-~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~-~~G~~~eA~e~~~~AlrL~P 341 (372)
T 3ly7_A 269 TL-PELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYE-MKGMNREAADAYLTAFNLRP 341 (372)
T ss_dssp TC-GGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHSC
T ss_pred hc-ccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHhcCC
Confidence 11 1223 46666666666666677777777777654 4566555544444555 66777777777777777777
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.29 E-value=0.00078 Score=50.37 Aligned_cols=64 Identities=13% Similarity=0.174 Sum_probs=35.0
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccCchHHHHHHHHHHHh
Q 007519 397 DLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFD 461 (600)
Q Consensus 397 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 461 (600)
+...|..+..++...|++++|+..|++..+.. +.+...|..+..++...|++++|.+.++++.+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34455555555666666666666666655532 22334455555555566666666666655553
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.25 E-value=0.00081 Score=48.97 Aligned_cols=64 Identities=28% Similarity=0.198 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCCcHHHHhHHHHhhCCcHHHHHHHHHHhhc
Q 007519 501 HRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLK 565 (600)
Q Consensus 501 ~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 565 (600)
...+..+...+. ..|++++|+..++++++..|+++.++..++.++...|++++|...++...+.
T Consensus 9 ~~~~~~la~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 9 AEAWYNLGNAYY-KQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 446667777777 9999999999999999999999999999999999999999999977766554
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.17 E-value=0.0033 Score=58.56 Aligned_cols=130 Identities=12% Similarity=0.088 Sum_probs=89.6
Q ss_pred CCCChhHHHHHHHHhcc-----cCchHHHHHHHHHHHhhcCCCCC-cchHHHHHHHHhh---cC-C-------hHHHHHH
Q 007519 429 THPNSVTFLGILSACSH-----AGLVSRGWELFNAMFDVYKIQPG-PEHYVSMINLLGR---AG-K-------IKEAEEF 491 (600)
Q Consensus 429 ~~p~~~~~~~l~~~~~~-----~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~---~g-~-------~~~A~~~ 491 (600)
.+.+...|...+++... ..+..+|..+|+++.+. .|+ ...+..+..+|.- .+ . ...+.+.
T Consensus 190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l---DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a 266 (372)
T 3ly7_A 190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS---SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDN 266 (372)
T ss_dssp SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHH
Confidence 46677778877765432 34568899999999975 785 4555555554431 11 1 1122222
Q ss_pred HHhCC-CCCCHHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCCcHHHHhHHHHhhCCcHHHHHHHHHHh
Q 007519 492 VLRLP-FEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMG 563 (600)
Q Consensus 492 ~~~~~-~~p~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 563 (600)
...+. .+.++..+..+...+. ..|++++|+..++++++++| +...|..+++++.-.|++++|.+.++...
T Consensus 267 ~~a~~~~~~~a~~~~alal~~l-~~gd~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~~G~~~eA~e~~~~Al 337 (372)
T 3ly7_A 267 IVTLPELNNLSIIYQIKAVSAL-VKGKTDESYQAINTGIDLEM-SWLNYVLLGKVYEMKGMNREAADAYLTAF 337 (372)
T ss_dssp HHTCGGGTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHhcccCCcCHHHHHHHHHHHH-hCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 22333 3345666666666666 78999999999999999998 77788899999999999999999664433
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.15 E-value=0.0021 Score=47.70 Aligned_cols=64 Identities=20% Similarity=0.183 Sum_probs=48.2
Q ss_pred HHHHHhhcCChHHHHHHHHhCC-CCC-CHH-HHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCCcH
Q 007519 475 MINLLGRAGKIKEAEEFVLRLP-FEP-DHR-IWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAH 539 (600)
Q Consensus 475 l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~-~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 539 (600)
.+..+.+.|++++|.+.+++.. ..| +.. .+..+..++. ..|++++|+..++++++++|+++.++
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYR-KLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 4566778888888888887764 344 445 6666666777 88899999999999999888777665
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.08 E-value=0.0019 Score=62.75 Aligned_cols=94 Identities=11% Similarity=0.010 Sum_probs=69.5
Q ss_pred ccCchHHHHHHHHHHHhhc--CCCCC----cchHHHHHHHHhhcCChHHHHHHHHhCC---------CCCCH-HHHHHHH
Q 007519 445 HAGLVSRGWELFNAMFDVY--KIQPG----PEHYVSMINLLGRAGKIKEAEEFVLRLP---------FEPDH-RIWGALL 508 (600)
Q Consensus 445 ~~g~~~~a~~~~~~~~~~~--~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~---------~~p~~-~~~~~l~ 508 (600)
..|++++|..++++..+.. -+.|+ ..+++.|+.+|...|++++|+.++++.. ..|+. .+++.+.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 4577888888888776532 12332 5678889999999999999998887752 44543 4678888
Q ss_pred HHHhhhhCCHHHHHHHHHHHHh-----hCCCCCCcH
Q 007519 509 GACGFCEGNAEIAEHAAKRLLE-----LDPLNAPAH 539 (600)
Q Consensus 509 ~~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~~~ 539 (600)
..+. .+|++++|+.+++++++ +.|++|.+-
T Consensus 390 ~~~~-~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~ 424 (433)
T 3qww_A 390 RLYM-GLENKAAGEKALKKAIAIMEVAHGKDHPYIS 424 (433)
T ss_dssp HHHH-HTTCHHHHHHHHHHHHHHHHHHTCTTCHHHH
T ss_pred HHHH-hccCHHHHHHHHHHHHHHHHHHcCCCChHHH
Confidence 8888 99999999999999988 567555443
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=97.04 E-value=0.011 Score=63.48 Aligned_cols=153 Identities=14% Similarity=0.146 Sum_probs=93.4
Q ss_pred HHHHHhcCChhhHHH-HhccCCCCCcchHHHHHHHHHcCCChhHHHHHhhhcCCCChhhHHHHHHHHHhcCChHHHHHHh
Q 007519 18 ITKYSKRGFIDEAKA-LFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLF 96 (600)
Q Consensus 18 ~~~~~~~g~~~~A~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 96 (600)
.......+++++|.+ ++..+. +......++..+.+.|.++.|.++.+.. ..-.......|+++.|.++.
T Consensus 606 ~~~~~~~~~~~~a~~~~l~~i~--~~~~~~~~~~~l~~~~~~~~a~~~~~~~--------~~~f~~~l~~~~~~~A~~~~ 675 (814)
T 3mkq_A 606 FQTLTLRGEIEEAIENVLPNVE--GKDSLTKIARFLEGQEYYEEALNISPDQ--------DQKFELALKVGQLTLARDLL 675 (814)
T ss_dssp HHHHHHTTCHHHHHHHTGGGCC--CHHHHHHHHHHHHHTTCHHHHHHHCCCH--------HHHHHHHHHHTCHHHHHHHH
T ss_pred HhHHHHhCCHHHHHHHHHhcCC--chHHHHHHHHHHHhCCChHHheecCCCc--------chheehhhhcCCHHHHHHHH
Confidence 344456788888887 665543 1223377777788888888888766421 12234456788888888887
Q ss_pred hcCCCCCceeHHHHHHHHHHCCChhHHHHHhhcCCCCCcccHHHHHHHHHhcCCHhHHHHHHHhcccCCchhHHHHHHHH
Q 007519 97 EEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGY 176 (600)
Q Consensus 97 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~ 176 (600)
+.+. +...|..+...+.+.++++.|.+.|.++.. |..+...+...|+.+...++.+...... -++.-..+|
T Consensus 676 ~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d-----~~~l~~l~~~~~~~~~~~~~~~~a~~~~--~~~~A~~~~ 746 (814)
T 3mkq_A 676 TDES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD-----LESLFLLHSSFNNKEGLVTLAKDAETTG--KFNLAFNAY 746 (814)
T ss_dssp TTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC-----HHHHHHHHHHTTCHHHHHHHHHHHHHTT--CHHHHHHHH
T ss_pred HhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC-----hhhhHHHHHHcCCHHHHHHHHHHHHHcC--chHHHHHHH
Confidence 7664 456788888888888888888888887633 3445555555666555444433322211 112223334
Q ss_pred HhcCChhHHHHHH
Q 007519 177 CRAGEVEEGYCLF 189 (600)
Q Consensus 177 ~~~g~~~~A~~~~ 189 (600)
.+.|++++|.+++
T Consensus 747 ~~~g~~~~a~~~~ 759 (814)
T 3mkq_A 747 WIAGDIQGAKDLL 759 (814)
T ss_dssp HHHTCHHHHHHHH
T ss_pred HHcCCHHHHHHHH
Confidence 4555555555553
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.98 E-value=0.0017 Score=63.01 Aligned_cols=83 Identities=11% Similarity=0.001 Sum_probs=66.1
Q ss_pred hcCChHHHHHHHHhCC---------CCCC-HHHHHHHHHHHhhhhCCHHHHHHHHHHHHh-----hCCCCC---CcHHHH
Q 007519 481 RAGKIKEAEEFVLRLP---------FEPD-HRIWGALLGACGFCEGNAEIAEHAAKRLLE-----LDPLNA---PAHVVL 542 (600)
Q Consensus 481 ~~g~~~~A~~~~~~~~---------~~p~-~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~-----~~p~~~---~~~~~l 542 (600)
..|++++|+.++++.. ..|+ ..+++.+..+|. ..|++++|+.+++++++ +.|++| ..++.|
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~-~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nL 388 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCL-YMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKL 388 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHH-hhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 4578899998887641 2333 356888999999 99999999999999998 456555 568899
Q ss_pred hHHHHhhCCcHHHHHHHHHHhh
Q 007519 543 CNIYAASGRHVEEHKLRMDMGL 564 (600)
Q Consensus 543 ~~~~~~~g~~~~A~~~~~~~~~ 564 (600)
+.+|..+|++++|..+++...+
T Consensus 389 a~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 389 GRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhccCHHHHHHHHHHHHH
Confidence 9999999999999997665543
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.91 E-value=0.0052 Score=59.79 Aligned_cols=100 Identities=8% Similarity=-0.103 Sum_probs=73.4
Q ss_pred HHHhcccCchHHHHHHHHHHHhhcC--CCCC----cchHHHHHHHHhhcCChHHHHHHHHhCC---------CCCCH-HH
Q 007519 440 LSACSHAGLVSRGWELFNAMFDVYK--IQPG----PEHYVSMINLLGRAGKIKEAEEFVLRLP---------FEPDH-RI 503 (600)
Q Consensus 440 ~~~~~~~g~~~~a~~~~~~~~~~~~--~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~---------~~p~~-~~ 503 (600)
+..+...|++++|..+++++.+... +.|+ ..+++.|+.+|...|++++|+.++++.. ..|+. .+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 3445567888899888888875421 2232 5678888999999999999998887652 34443 45
Q ss_pred HHHHHHHHhhhhCCHHHHHHHHHHHHh-----hCCCCCCcHH
Q 007519 504 WGALLGACGFCEGNAEIAEHAAKRLLE-----LDPLNAPAHV 540 (600)
Q Consensus 504 ~~~l~~~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~~~~ 540 (600)
++.+...+. .+|++++|+.+++++++ +.|++|.+-.
T Consensus 374 l~nLa~~~~-~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~ 414 (429)
T 3qwp_A 374 VMKVGKLQL-HQGMFPQAMKNLRLAFDIMRVTHGREHSLIED 414 (429)
T ss_dssp HHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHH
T ss_pred HHHHHHHHH-hcCCHHHHHHHHHHHHHHHHHhcCCCChHHHH
Confidence 777888888 99999999999999988 5676665544
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.89 E-value=0.0022 Score=47.60 Aligned_cols=58 Identities=17% Similarity=0.142 Sum_probs=51.0
Q ss_pred HHHHhhhhCCHHHHHHHHHHHHhhCCCCCC-cHHHHhHHHHhhCCcHHHHHHHHHHhhcC
Q 007519 508 LGACGFCEGNAEIAEHAAKRLLELDPLNAP-AHVVLCNIYAASGRHVEEHKLRMDMGLKG 566 (600)
Q Consensus 508 ~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 566 (600)
...+. ..|++++|+..++++++..|+++. .+..++.++...|++++|.+.++...+..
T Consensus 7 a~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 7 IKELI-NQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHH-HHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHH-HcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 34455 889999999999999999999989 99999999999999999999777666543
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.86 E-value=0.0035 Score=61.05 Aligned_cols=88 Identities=14% Similarity=0.002 Sum_probs=69.6
Q ss_pred HHHHhhcCChHHHHHHHHhCC------CCCC----HHHHHHHHHHHhhhhCCHHHHHHHHHHHHh-----hCCCCC---C
Q 007519 476 INLLGRAGKIKEAEEFVLRLP------FEPD----HRIWGALLGACGFCEGNAEIAEHAAKRLLE-----LDPLNA---P 537 (600)
Q Consensus 476 ~~~~~~~g~~~~A~~~~~~~~------~~p~----~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~-----~~p~~~---~ 537 (600)
+.-+.+.|++++|++++++.. +.|+ ..+++.+...|. ..|++++|+.+++++++ +.|++| .
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~-~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~ 372 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACI-NLGLLEEALFYGTRTMEPYRIFFPGSHPVRGV 372 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHH-hhccHHHHHHHHHHHHHhHHHHcCCCChHHHH
Confidence 445668899999999987641 3333 346888888999 99999999999999988 445554 5
Q ss_pred cHHHHhHHHHhhCCcHHHHHHHHHHhh
Q 007519 538 AHVVLCNIYAASGRHVEEHKLRMDMGL 564 (600)
Q Consensus 538 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 564 (600)
.+..|+.+|...|++++|..+++...+
T Consensus 373 ~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 373 QVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 688999999999999999996665543
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.75 E-value=0.031 Score=59.99 Aligned_cols=152 Identities=15% Similarity=0.114 Sum_probs=83.4
Q ss_pred HHHHHCCChhHHHH-HhhcCCCCCcccHHHHHHHHHhcCCHhHHHHHHHhcccCCchhHHHHHHHHHhcCChhHHHHHHc
Q 007519 112 VGLIRNGELNEARK-VFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFR 190 (600)
Q Consensus 112 ~~~~~~~~~~~a~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 190 (600)
......+++++|.+ ++..+. +......++..+.+.|..+.|.++.+.. ..-.......|+++.|.++.+
T Consensus 607 ~~~~~~~~~~~a~~~~l~~i~--~~~~~~~~~~~l~~~~~~~~a~~~~~~~--------~~~f~~~l~~~~~~~A~~~~~ 676 (814)
T 3mkq_A 607 QTLTLRGEIEEAIENVLPNVE--GKDSLTKIARFLEGQEYYEEALNISPDQ--------DQKFELALKVGQLTLARDLLT 676 (814)
T ss_dssp HHHHHTTCHHHHHHHTGGGCC--CHHHHHHHHHHHHHTTCHHHHHHHCCCH--------HHHHHHHHHHTCHHHHHHHHT
T ss_pred hHHHHhCCHHHHHHHHHhcCC--chHHHHHHHHHHHhCCChHHheecCCCc--------chheehhhhcCCHHHHHHHHH
Confidence 33445677777766 554432 1222355666666777777776654321 111334566778888877776
Q ss_pred cCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHhcCChhhHHHHhcccCCCCchhHH
Q 007519 191 RMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWT 270 (600)
Q Consensus 191 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 270 (600)
.+. +...|..+...+.+.|+++.|.++|..+.. |..+...+...++.+...++-+.....+ -++
T Consensus 677 ~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d------------~~~l~~l~~~~~~~~~~~~~~~~a~~~~--~~~ 740 (814)
T 3mkq_A 677 DES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD------------LESLFLLHSSFNNKEGLVTLAKDAETTG--KFN 740 (814)
T ss_dssp TCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC------------HHHHHHHHHHTTCHHHHHHHHHHHHHTT--CHH
T ss_pred hhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC------------hhhhHHHHHHcCCHHHHHHHHHHHHHcC--chH
Confidence 663 456777888888888888888888777653 2334444444555554433322222111 112
Q ss_pred HHHHHHHhcCChHHHHHHH
Q 007519 271 SMIDGYLSVGQVSNAYYLF 289 (600)
Q Consensus 271 ~l~~~~~~~~~~~~A~~~~ 289 (600)
....+|.+.|++++|++++
T Consensus 741 ~A~~~~~~~g~~~~a~~~~ 759 (814)
T 3mkq_A 741 LAFNAYWIAGDIQGAKDLL 759 (814)
T ss_dssp HHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHH
Confidence 2333444556666555553
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=96.67 E-value=0.68 Score=47.02 Aligned_cols=317 Identities=9% Similarity=-0.045 Sum_probs=166.0
Q ss_pred HHhcCChhHHHHHHccCCCCCcchHHHHHHHHHhcC--ChhHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHhcCChhh
Q 007519 176 YCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNG--FHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEE 253 (600)
Q Consensus 176 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 253 (600)
..+.|++..+..+...+.......|...-..-...+ ...+....+.+-. +.+.....-..-+..+.+.+++..
T Consensus 16 a~~~~~~~~~~~l~~~l~~~pL~~yl~y~~l~~~l~~~~~~ev~~Fl~~~~-----~~p~~~~Lr~~~l~~l~~~~~w~~ 90 (618)
T 1qsa_A 16 AWDNRQMDVVEQMMPGLKDYPLYPYLEYRQITDDLMNQPAVTVTNFVRANP-----TLPPARTLQSRFVNELARREDWRG 90 (618)
T ss_dssp HHHTTCHHHHHHHSGGGTTSTTHHHHHHHHHHHTGGGCCHHHHHHHHHHCT-----TCHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHCCCHHHHHHHHHhhcCCCcHHHHHHHHHHhCcccCCHHHHHHHHHHCC-----CChhHHHHHHHHHHHHHhCCCHHH
Confidence 456688888888877775433333332222111112 3444444444332 112222333445666777888888
Q ss_pred HHHHhcccCCCCchhHHHHHHHHHhcCChHHHHHHHhhCCC---CChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC
Q 007519 254 AQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPD---RDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPP 330 (600)
Q Consensus 254 a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 330 (600)
...++.. .+.+...-.....+....|+..+|......+-. .....+..+ |..+.+.|...
T Consensus 91 ~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~~p~~c~~l----------------~~~~~~~g~lt 153 (618)
T 1qsa_A 91 LLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPNACDKL----------------FSVWRASGKQD 153 (618)
T ss_dssp HHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCTHHHHH----------------HHHHHHTTCSC
T ss_pred HHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCcHHHHHH----------------HHHHHHCCCCC
Confidence 8887776 455666666677777778886655554333211 122333444 44444333222
Q ss_pred ChhHHHHHHHHHhcccchhhhHHHHHHHhhhcCCCch-hHHHHHHHHHHhcCChHHHHHHHhcCCCCChh---hHHHHHH
Q 007519 331 LNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDL-ILENCLISMYAKCGVIDNAYNIFSNMVSRDLV---SWNSMVM 406 (600)
Q Consensus 331 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~l~~ 406 (600)
+...+.- +......|+...|..+...+ .++. .....++..+. +...+....... .++.. .+...+.
T Consensus 154 ~~~~~~R-~~~al~~~~~~~a~~l~~~l-----~~~~~~~a~~~~al~~---~p~~~~~~~~~~-~~~~~~~~~~~~~~~ 223 (618)
T 1qsa_A 154 PLAYLER-IRLAMKAGNTGLVTVLAGQM-----PADYQTIASAIISLAN---NPNTVLTFARTT-GATDFTRQMAAVAFA 223 (618)
T ss_dssp HHHHHHH-HHHHHHTTCHHHHHHHHHTC-----CGGGHHHHHHHHHHHH---CGGGHHHHHHHS-CCCHHHHHHHHHHHH
T ss_pred HHHHHHH-HHHHHHCCCHHHHHHHHHhC-----CHHHHHHHHHHHHHHh---ChHhHHHHHhcc-CCChhhHHHHHHHHH
Confidence 2222221 23333445555555554432 1221 12233333333 233333333332 22222 1122222
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCChhH----HHHHHHHhcccCchHHHHHHHHHHHhhcCCCCCcchHHHHHHHHhhc
Q 007519 407 GFSHHGLANETLKVFESMLESGTHPNSVT----FLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRA 482 (600)
Q Consensus 407 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~----~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 482 (600)
-+.+ .+.+.|...|....... ..+... ...+.......+...++...+...... .++.....-.+....+.
T Consensus 224 rlar-~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~e~~~r~Alr~ 298 (618)
T 1qsa_A 224 SVAR-QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---SQSTSLIERRVRMALGT 298 (618)
T ss_dssp HHHH-HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---CCCHHHHHHHHHHHHHH
T ss_pred HHHh-cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc---CCChHHHHHHHHHHHHC
Confidence 3333 47899999999887643 233322 223333445556455666666665432 23333344455555678
Q ss_pred CChHHHHHHHHhCCCCC--CHHHHHHHHHHHhhhhCCHHHHHHHHHHHHh
Q 007519 483 GKIKEAEEFVLRLPFEP--DHRIWGALLGACGFCEGNAEIAEHAAKRLLE 530 (600)
Q Consensus 483 g~~~~A~~~~~~~~~~p--~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~ 530 (600)
|+++.|.+.|+.++..+ .....-.+..+.. ..|+.++|..+|+++..
T Consensus 299 ~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~-~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 299 GDRRGLNTWLARLPMEAKEKDEWRYWQADLLL-ERGREAEAKEILHQLMQ 347 (618)
T ss_dssp TCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHH-HTTCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHccccccccHhHHHHHHHHHH-HcCCHHHHHHHHHHHhc
Confidence 99999999999997433 2333444555666 88999999999999875
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} | Back alignment and structure |
|---|
Probab=96.66 E-value=0.25 Score=42.45 Aligned_cols=157 Identities=6% Similarity=0.022 Sum_probs=76.5
Q ss_pred hcCCCChhhHHHHHHHHHhcCChHHHHHHhhcCCCCCceeHHHHHHHHHHCCChhHHHHHhhcCCCCCcccHHHHHHHHH
Q 007519 67 EMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYV 146 (600)
Q Consensus 67 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~ 146 (600)
.+..++..+-...+..+.+.|..+....+.+.+..+|.......+.++...++.+....+.+.+.+++...-...+.++.
T Consensus 27 ~L~~~~~~vR~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~ 106 (211)
T 3ltm_A 27 NLQDDSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQSAAVALG 106 (211)
T ss_dssp HTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHHhCCccHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 33334444444445555555554333334444444555555555555555555444444444444455555555555555
Q ss_pred hcCCHhHHHHHHHhcccCCchhHHHHHHHHHhcCChhHHHHHHccCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHH
Q 007519 147 ECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMK 224 (600)
Q Consensus 147 ~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 224 (600)
+.|+.+....+.+.+.+++..+....+.++.+.|+.+....+...+..++...-...+.++.+.+. ..+...+..+.
T Consensus 107 ~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-~~~~~~L~~~l 183 (211)
T 3ltm_A 107 QIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGG-ERVRAAMEKLA 183 (211)
T ss_dssp HHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-HHHHHHHHHHH
T ss_pred HhCcHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-hhHHHHHHHHH
Confidence 555544444444444455555555555555555554433333333334454444455555555544 33444444444
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=96.45 E-value=0.0094 Score=53.08 Aligned_cols=56 Identities=14% Similarity=0.094 Sum_probs=29.7
Q ss_pred CCHHHHHHHHHHHHhhCCCC-CCcHHHHhHHHHhh-CCcHHHHHHHHHHhhcCCccCC
Q 007519 516 GNAEIAEHAAKRLLELDPLN-APAHVVLCNIYAAS-GRHVEEHKLRMDMGLKGVRKVP 571 (600)
Q Consensus 516 g~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~ 571 (600)
|+.++|.++|+++++++|+. ..++...+..++.. |+.++|.+.++.......+..|
T Consensus 218 Gd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~~P 275 (301)
T 3u64_A 218 GGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPESVP 275 (301)
T ss_dssp CCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGGCS
T ss_pred CCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCC
Confidence 55555555555555555542 55555555555542 5555555555555444444333
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.40 E-value=0.0072 Score=48.17 Aligned_cols=88 Identities=14% Similarity=-0.039 Sum_probs=62.1
Q ss_pred CchHHHHHHHHHHHhhcCCCCCcchHHHHHHHHhhcC---ChHHHHHHHHhCC-CC-C-C-HHHHHHHHHHHhhhhCCHH
Q 007519 447 GLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAG---KIKEAEEFVLRLP-FE-P-D-HRIWGALLGACGFCEGNAE 519 (600)
Q Consensus 447 g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~-~~-p-~-~~~~~~l~~~~~~~~g~~~ 519 (600)
+....+.+.|.+.... + .++..+...++.++++++ +.+++..++++.. .. | + ...+..+.-++. +.|+++
T Consensus 12 ~~l~~~~~~y~~e~~~-~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~-kl~~Y~ 88 (152)
T 1pc2_A 12 EDLLKFEKKFQSEKAA-G-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNY-RLKEYE 88 (152)
T ss_dssp HHHHHHHHHHHHHHHT-T-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH-HTSCHH
T ss_pred HHHHHHHHHHHHHHcc-C-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHH-HccCHH
Confidence 4455666666666553 2 257778888888888888 6668888887764 23 5 2 334445555666 899999
Q ss_pred HHHHHHHHHHhhCCCCCC
Q 007519 520 IAEHAAKRLLELDPLNAP 537 (600)
Q Consensus 520 ~a~~~~~~~~~~~p~~~~ 537 (600)
+|.+.++++++.+|+|..
T Consensus 89 ~A~~y~~~lL~ieP~n~Q 106 (152)
T 1pc2_A 89 KALKYVRGLLQTEPQNNQ 106 (152)
T ss_dssp HHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHhcCCCCHH
Confidence 999999999999995443
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=96.39 E-value=0.0098 Score=44.59 Aligned_cols=72 Identities=19% Similarity=0.097 Sum_probs=49.9
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHhCC---------CCCCHHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCCcHHH
Q 007519 471 HYVSMINLLGRAGKIKEAEEFVLRLP---------FEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVV 541 (600)
Q Consensus 471 ~~~~l~~~~~~~g~~~~A~~~~~~~~---------~~p~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 541 (600)
.+..|+..+.+.|+++.|...++... ..+...++..+..++. +.|+++.|+.++++++++.|+++.+...
T Consensus 7 dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~-~~g~~~~A~~~~~~al~l~P~~~~~~~n 85 (104)
T 2v5f_A 7 DCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVY-QQGDLDKALLLTKKLLELDPEHQRANGN 85 (104)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHH-HccCHHHHHHHHHHHHhcCCCCHHHHhh
Confidence 44456666666666666666665531 1134556777777787 9999999999999999999977666555
Q ss_pred Hh
Q 007519 542 LC 543 (600)
Q Consensus 542 l~ 543 (600)
+.
T Consensus 86 ~~ 87 (104)
T 2v5f_A 86 LK 87 (104)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} | Back alignment and structure |
|---|
Probab=96.31 E-value=0.2 Score=43.09 Aligned_cols=157 Identities=10% Similarity=0.052 Sum_probs=114.5
Q ss_pred CChhhHHHHhccCCCCCcchHHHHHHHHHcCCChhHHHHHhhhcCCCChhhHHHHHHHHHhcCChHHHHHHhhcCCCCCc
Q 007519 25 GFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNV 104 (600)
Q Consensus 25 g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 104 (600)
++.+....+.+.+..++...-...+..+.+.|..+....+.+.+..+|..+-...+.++.+.++.+....+.+.+..+|.
T Consensus 16 ~~~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~~~~ 95 (211)
T 3ltm_A 16 ADPEKVEMYIKNLQDDSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDERAVEPLIKALKDEDG 95 (211)
T ss_dssp CCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSH
T ss_pred cCHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCCccHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCH
Confidence 34444455555566677777777778888878766556666666668877777778888888876666666666666888
Q ss_pred eeHHHHHHHHHHCCChhHHHHHhhcCCCCCcccHHHHHHHHHhcCCHhHHHHHHHhcccCCchhHHHHHHHHHhcCC
Q 007519 105 VSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGE 181 (600)
Q Consensus 105 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~ 181 (600)
......+.++.+.++.+..-.+.+-+.+++...-...+.++...|+.+....+...+.+++..+....+.++.+.+.
T Consensus 96 ~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~ 172 (211)
T 3ltm_A 96 WVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGG 172 (211)
T ss_dssp HHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc
Confidence 88888888888888876666666666668888888888888888887655556565556787777777888887776
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} | Back alignment and structure |
|---|
Probab=96.24 E-value=0.23 Score=42.31 Aligned_cols=175 Identities=9% Similarity=0.037 Sum_probs=99.3
Q ss_pred hccCCCCCcchHHHHHHHHHcCCChhHHHHHhhhcCCCChhhHHHHHHHHHhcCChHHHHHHhhcCCCCCceeHHHHHHH
Q 007519 34 FQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVG 113 (600)
Q Consensus 34 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~ 113 (600)
++.+..++...-...+..+...|..+....+.+.+..++..+-...+.++.+.|..+....+.+.+..+|.......+.+
T Consensus 20 i~~L~~~~~~vr~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~~~~~~L~~~l~d~~~~vr~~a~~a 99 (201)
T 3ltj_A 20 IKNLQDDSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQSAAVA 99 (201)
T ss_dssp HHHTTCSCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHH
T ss_pred HHHhcCCCHHHHHHHHHHHHhcCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 33444455555555555555555544444455555456666656666666666665555555555555666666667777
Q ss_pred HHHCCChhHHHHHhhcCCCCCcccHHHHHHHHHhcCCHhHHHHHHHhcccCCchhHHHHHHHHHhcCChhHHHHHHccC-
Q 007519 114 LIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRM- 192 (600)
Q Consensus 114 ~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~- 192 (600)
+.+.++.+....+.+.+.+++...-...+.++...++.+....+...+.+++..+....+.++.+.|+.+ +...+..+
T Consensus 100 L~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~~-~~~~L~~~l 178 (201)
T 3ltj_A 100 LGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGGER-VRAAMEKLA 178 (201)
T ss_dssp HHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHTCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCSHH-HHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCchh-HHHHHHHHH
Confidence 7777766555555555555666666666777777776555444555455566666666666666666543 33333333
Q ss_pred CCCCcchHHHHHHHHHh
Q 007519 193 PRKNVVSWTAMIGGFAW 209 (600)
Q Consensus 193 ~~~~~~~~~~li~~~~~ 209 (600)
..++...-...+.++.+
T Consensus 179 ~d~~~~vr~~A~~aL~~ 195 (201)
T 3ltj_A 179 ETGTGFARKVAVNYLET 195 (201)
T ss_dssp HHCCHHHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHH
Confidence 23444444444444443
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=96.24 E-value=0.033 Score=40.50 Aligned_cols=66 Identities=12% Similarity=-0.036 Sum_probs=46.5
Q ss_pred CcchHHHHHHHHhhcCC---hHHHHHHHHhCC-CCCC-HHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCC
Q 007519 468 GPEHYVSMINLLGRAGK---IKEAEEFVLRLP-FEPD-HRIWGALLGACGFCEGNAEIAEHAAKRLLELDPL 534 (600)
Q Consensus 468 ~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~ 534 (600)
++..+..++.++...++ .++|..++++.. ..|+ ......+...+. ..|++++|+..|+++++.+|.
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~-~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHF-ISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTCCCT
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhCCC
Confidence 56677777777754444 688888887764 4554 445555555566 888888888888888888885
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} | Back alignment and structure |
|---|
Probab=96.12 E-value=0.54 Score=39.93 Aligned_cols=162 Identities=6% Similarity=0.021 Sum_probs=98.4
Q ss_pred HHhhhcCCCChhhHHHHHHHHHhcCChHHHHHHhhcCCCCCceeHHHHHHHHHHCCChhHHHHHhhcCCCCCcccHHHHH
Q 007519 63 RLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMI 142 (600)
Q Consensus 63 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~ 142 (600)
.+++.+..+|..+-...+.++.+.|..+....+.+.+..+|.......+.++...++.+..-.+.+.+.+++...-...+
T Consensus 18 ~~i~~L~~~~~~vr~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~~~~~~L~~~l~d~~~~vr~~a~ 97 (201)
T 3ltj_A 18 MYIKNLQDDSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQSAA 97 (201)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHhcCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHHHHHHH
Confidence 34444445666666666666666666555555555555566666666677777777665555555555567777777777
Q ss_pred HHHHhcCCHhHHHHHHHhcccCCchhHHHHHHHHHhcCChhHHHHHHccCCCCCcchHHHHHHHHHhcCChhHHHHHHHH
Q 007519 143 AGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIE 222 (600)
Q Consensus 143 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 222 (600)
.++...++.+....+.+.+.+++..+....+.++.+.++.+....+...+..++...-...+.++...|. ..+...+..
T Consensus 98 ~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~-~~~~~~L~~ 176 (201)
T 3ltj_A 98 VALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGG-ERVRAAMEK 176 (201)
T ss_dssp HHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHTCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-HHHHHHHHH
T ss_pred HHHHHhCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-hhHHHHHHH
Confidence 7777777765555555555566666666667777776665444444444445555555566666666654 345555555
Q ss_pred HHh
Q 007519 223 MKG 225 (600)
Q Consensus 223 ~~~ 225 (600)
+..
T Consensus 177 ~l~ 179 (201)
T 3ltj_A 177 LAE 179 (201)
T ss_dssp HHH
T ss_pred HHh
Confidence 543
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.93 E-value=0.32 Score=39.83 Aligned_cols=45 Identities=16% Similarity=0.355 Sum_probs=20.3
Q ss_pred HhcCChHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHH
Q 007519 378 AKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESM 424 (600)
Q Consensus 378 ~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m 424 (600)
...|+++.|.++.+.+ .+...|..|.......|+++-|.+.|.+.
T Consensus 16 L~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp HHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 3444555544444433 23344444444444444444444444443
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=95.88 E-value=2.2 Score=45.10 Aligned_cols=159 Identities=9% Similarity=0.043 Sum_probs=69.0
Q ss_pred HhcccchhhhHHHHHHHhhhcCCCchhHHHHHHHHHHhcCChHHHHHHHhcCC-CCChh-hHH---HHHHHHHhcCChHH
Q 007519 342 AGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMV-SRDLV-SWN---SMVMGFSHHGLANE 416 (600)
Q Consensus 342 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~~~-~~~---~l~~~~~~~~~~~~ 416 (600)
+.-.|+.+....++..+.+.. ..+..-...+.-++...|+.+.+..+++.+. ..+.. -|. ++..+|+..|+...
T Consensus 500 ~vGTgn~~ai~~LL~~~~e~~-~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~a 578 (963)
T 4ady_A 500 MLGTGKPEAIHDMFTYSQETQ-HGNITRGLAVGLALINYGRQELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSA 578 (963)
T ss_dssp HTTCCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHH
T ss_pred hcccCCHHHHHHHHHHHhccC-cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHH
Confidence 334556666666666544321 1111111222222334556555555555443 12221 122 22334556666666
Q ss_pred HHHHHHHHHHcCCCCChhHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCCCcchHHHHHHHHhhcCCh-HHHHHHHHhC
Q 007519 417 TLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKI-KEAEEFVLRL 495 (600)
Q Consensus 417 a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~-~~A~~~~~~~ 495 (600)
..++++.+.+.. ..+......+.-++...|+.+.+.++++.+.+. ..|...--..++-+....|.. .+|.+.+..+
T Consensus 579 Iq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~--~d~~VR~gAalALGli~aGn~~~~aid~L~~L 655 (963)
T 4ady_A 579 VKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKS--HNAHVRCGTAFALGIACAGKGLQSAIDVLDPL 655 (963)
T ss_dssp HHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGC--SCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHH
T ss_pred HHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHhccCCCcHHHHHHHHHH
Confidence 666666666531 112222222222333345555555555544432 233333333333333333332 5566666666
Q ss_pred CCCCCHHHH
Q 007519 496 PFEPDHRIW 504 (600)
Q Consensus 496 ~~~p~~~~~ 504 (600)
...++..+-
T Consensus 656 ~~D~d~~Vr 664 (963)
T 4ady_A 656 TKDPVDFVR 664 (963)
T ss_dssp HTCSSHHHH
T ss_pred ccCCCHHHH
Confidence 545555443
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=95.52 E-value=0.59 Score=35.84 Aligned_cols=141 Identities=13% Similarity=0.167 Sum_probs=91.2
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCCCcchHHHHHHHHhhcCChHH
Q 007519 408 FSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKE 487 (600)
Q Consensus 408 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 487 (600)
+.-.|..++..++..+.... .+..-++.++--....-+=+-..+.++.+-+-+.+. .+|+...
T Consensus 17 ~ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis--------------~C~NlKr 79 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLD--------------KCQNLKS 79 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGG--------------GCSCTHH
T ss_pred HHHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhhcCcH--------------hhhcHHH
Confidence 44567788888888777653 233444444433333334444455555554332222 3444444
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCCcHHHHhHHHHhhCCcHHHHHHHHHHhhcCC
Q 007519 488 AEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGV 567 (600)
Q Consensus 488 A~~~~~~~~~~p~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 567 (600)
....+-.+. .+...++..+.... .+|..++-.+++..++...|.+|.....++.+|.+.|+..+|.+++.+.-++|+
T Consensus 80 Vi~C~~~~n--~~se~vd~ALd~lv-~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 80 VVECGVINN--TLNEHVNKALDILV-IQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHHHHHTT--CCCHHHHHHHHHHH-HTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhc--chHHHHHHHHHHHH-HhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 444444432 24445566667777 889999999999886665555899999999999999999999999999999988
Q ss_pred c
Q 007519 568 R 568 (600)
Q Consensus 568 ~ 568 (600)
+
T Consensus 157 k 157 (172)
T 1wy6_A 157 K 157 (172)
T ss_dssp H
T ss_pred H
Confidence 5
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=95.12 E-value=0.046 Score=48.75 Aligned_cols=107 Identities=14% Similarity=0.110 Sum_probs=65.2
Q ss_pred chHHHHHHHHHHHhhcCCCCC---cchHHHHHHHHhh-----cCChHHHHHHHHhCC-CCCC--HHHHHHHHHHHhhhhC
Q 007519 448 LVSRGWELFNAMFDVYKIQPG---PEHYVSMINLLGR-----AGKIKEAEEFVLRLP-FEPD--HRIWGALLGACGFCEG 516 (600)
Q Consensus 448 ~~~~a~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~-----~g~~~~A~~~~~~~~-~~p~--~~~~~~l~~~~~~~~g 516 (600)
....|...++++.+. .|+ -..|..|+..|.. -|+.++|.+.|++.. +.|+ ..++......+....|
T Consensus 178 ~l~~A~a~lerAleL---DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~g 254 (301)
T 3u64_A 178 TVHAAVMMLERACDL---WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLN 254 (301)
T ss_dssp HHHHHHHHHHHHHHH---CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTT
T ss_pred hHHHHHHHHHHHHHh---CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcC
Confidence 345666666666643 554 4567777777777 378888888887764 5663 4445555555551248
Q ss_pred CHHHHHHHHHHHHhhCCCC-CCcHHHHhHHHHhhCCcHHHHHHHHHHh
Q 007519 517 NAEIAEHAAKRLLELDPLN-APAHVVLCNIYAASGRHVEEHKLRMDMG 563 (600)
Q Consensus 517 ~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 563 (600)
+.+.+.+.+++++...|.. |. +.+...+.-++|..+++.+.
T Consensus 255 d~~~a~~~L~kAL~a~p~~~P~------~~lan~~~q~eA~~LL~~~~ 296 (301)
T 3u64_A 255 NRAGFDEALDRALAIDPESVPH------NKLLVILSQKRARWLKAHVQ 296 (301)
T ss_dssp CHHHHHHHHHHHHHCCGGGCSS------CHHHHHHHHHHHHHHHHTHH
T ss_pred CHHHHHHHHHHHHcCCCCCCCC------hhHHHHHHHHHHHHHHHHhH
Confidence 8888888888888877732 33 12233334456666555443
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.06 E-value=1.2 Score=36.51 Aligned_cols=19 Identities=11% Similarity=-0.073 Sum_probs=9.4
Q ss_pred HHHHhcCChHHHHHHHhcC
Q 007519 375 SMYAKCGVIDNAYNIFSNM 393 (600)
Q Consensus 375 ~~~~~~~~~~~A~~~~~~~ 393 (600)
..+.-.|+++++.++|.+.
T Consensus 97 ~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 97 LNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHHC
Confidence 3344455555555555443
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=94.99 E-value=0.15 Score=38.97 Aligned_cols=90 Identities=14% Similarity=-0.030 Sum_probs=59.6
Q ss_pred chHHHHHHHHHHHhhcCCCCCcchHHHHHHHHhhcCChHH---HHHHHHhCC-CC-C-CHHHHHH-HHHHHhhhhCCHHH
Q 007519 448 LVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKE---AEEFVLRLP-FE-P-DHRIWGA-LLGACGFCEGNAEI 520 (600)
Q Consensus 448 ~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~-~~-p-~~~~~~~-l~~~~~~~~g~~~~ 520 (600)
....+.+.|.+.... + .|+..+--.++++++++..... ++.+++.+. .. | ...-+.. +.-++. +.|++++
T Consensus 16 ~l~~~~~~y~~e~~~-~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~y-klg~Y~~ 92 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAA-G-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNY-RLKEYEK 92 (126)
T ss_dssp HHHHHHHHHHHHHHH-S-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHH-HTTCHHH
T ss_pred HHHHHHHHHHHHhcc-C-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH-HhhhHHH
Confidence 344555556555443 2 2667777778888888886665 777777754 22 4 2333333 333555 8999999
Q ss_pred HHHHHHHHHhhCCCCCCcHH
Q 007519 521 AEHAAKRLLELDPLNAPAHV 540 (600)
Q Consensus 521 a~~~~~~~~~~~p~~~~~~~ 540 (600)
|.+.++.+++.+|+|..+..
T Consensus 93 A~~~~~~lL~~eP~n~QA~~ 112 (126)
T 1nzn_A 93 ALKYVRGLLQTEPQNNQAKE 112 (126)
T ss_dssp HHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHH
Confidence 99999999999996654443
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=94.98 E-value=0.12 Score=41.24 Aligned_cols=86 Identities=15% Similarity=0.085 Sum_probs=60.4
Q ss_pred hHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccC---chHHHHHHHHHHHhhcCCCC--CcchHHHHHHHHhhcCChHHH
Q 007519 414 ANETLKVFESMLESGTHPNSVTFLGILSACSHAG---LVSRGWELFNAMFDVYKIQP--GPEHYVSMINLLGRAGKIKEA 488 (600)
Q Consensus 414 ~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A 488 (600)
...+.+-|.+..+.| .++..+.-.+..++++.+ ++++++.+++.+.+. . .| ....+..|+-+|.+.|++++|
T Consensus 14 l~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~-~-~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPK-G-SKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH-S-CHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-C-CccchHHHHHHHHHHHHHccCHHHH
Confidence 345556666666555 366666666667777776 677888888888875 2 25 366777788888999999999
Q ss_pred HHHHHhCC-CCCCHH
Q 007519 489 EEFVLRLP-FEPDHR 502 (600)
Q Consensus 489 ~~~~~~~~-~~p~~~ 502 (600)
.+.++.+. ..|+..
T Consensus 91 ~~y~~~lL~ieP~n~ 105 (152)
T 1pc2_A 91 LKYVRGLLQTEPQNN 105 (152)
T ss_dssp HHHHHHHHHHCTTCH
T ss_pred HHHHHHHHhcCCCCH
Confidence 99988864 566443
|
| >1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 | Back alignment and structure |
|---|
Probab=94.67 E-value=2.4 Score=38.17 Aligned_cols=219 Identities=11% Similarity=0.049 Sum_probs=119.3
Q ss_pred HhccCCCCCcchHHHHHHHHHcCCChhHHHHHhhhcCCCChhhHHHHHHHHHhcCCh----HHHHHHhhc--CCCCCcee
Q 007519 33 LFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRV----CEARKLFEE--MPERNVVS 106 (600)
Q Consensus 33 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~----~~A~~~~~~--~~~~~~~~ 106 (600)
+.+.+..++...-...+.++.+.|..+....+.+.+..++..+-...+.++.+.|.. .....++.. ..+++...
T Consensus 28 L~~~L~~~~~~vr~~A~~~L~~~~~~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~~~~l~~~L~~~~~~d~~~~v 107 (280)
T 1oyz_A 28 LFRLLDDHNSLKRISSARVLQLRGGQDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCEDNVFNILNNMALNDKSACV 107 (280)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHHHHHHHHHHHHHHCSCHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHccCCchHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccchHHHHHHHHHHhcCCCHHH
Confidence 334444566665556666666666544444444444456666666666777766632 233334432 12366666
Q ss_pred HHHHHHHHHHCCC-----hhHHHHHhhc-CCCCCcccHHHHHHHHHhcCCHhHHHHHHHhcccCCchhHHHHHHHHHhcC
Q 007519 107 WNSMVVGLIRNGE-----LNEARKVFNS-MPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAG 180 (600)
Q Consensus 107 ~~~l~~~~~~~~~-----~~~a~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g 180 (600)
....+.++...+. ...+...+.. +..++...-...+.++...|+.+....+.+.+.+++..+....+.++...|
T Consensus 108 r~~a~~aL~~l~~~~~~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~ 187 (280)
T 1oyz_A 108 RATAIESTAQRCKKNPIYSPKIVEQSQITAFDKSTNVRRATAFAISVINDKATIPLLINLLKDPNGDVRNWAAFAININK 187 (280)
T ss_dssp HHHHHHHHHHHHHHCGGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC---CCHHHHHHHHTCSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhccCCcccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhhc
Confidence 6666666666541 2344444433 445777777777777877777554444555555677666666666666655
Q ss_pred -ChhHHH-HHHccCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHhcCChhhHHHHh
Q 007519 181 -EVEEGY-CLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLF 258 (600)
Q Consensus 181 -~~~~A~-~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 258 (600)
+...+. .+...+..++...-...+.++.+.|+.. +...+..... .++ .-...+.++.+.|+. .+...+
T Consensus 188 ~~~~~~~~~L~~~l~d~~~~vR~~A~~aL~~~~~~~-~~~~L~~~l~------d~~--vr~~a~~aL~~i~~~-~~~~~L 257 (280)
T 1oyz_A 188 YDNSDIRDCFVEMLQDKNEEVRIEAIIGLSYRKDKR-VLSVLCDELK------KNT--VYDDIIEAAGELGDK-TLLPVL 257 (280)
T ss_dssp CCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCGG-GHHHHHHHHT------SSS--CCHHHHHHHHHHCCG-GGHHHH
T ss_pred cCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCHh-hHHHHHHHhc------Ccc--HHHHHHHHHHhcCch-hhhHHH
Confidence 123333 3444445567667777777788877654 4444444443 123 223445666666764 344444
Q ss_pred ccc
Q 007519 259 DTV 261 (600)
Q Consensus 259 ~~~ 261 (600)
..+
T Consensus 258 ~~~ 260 (280)
T 1oyz_A 258 DTM 260 (280)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=94.53 E-value=4.6 Score=40.96 Aligned_cols=371 Identities=9% Similarity=-0.029 Sum_probs=194.8
Q ss_pred HHhcCCHhHHHHHHHhcccCCchhHHHHHHHHHh--cCChhHHHHHHccCCC-CCc-chHHHHHHHHHhcCChhHHHHHH
Q 007519 145 YVECCMMGEAIVLFEEMEERNVVTWTSMISGYCR--AGEVEEGYCLFRRMPR-KNV-VSWTAMIGGFAWNGFHKESLLLF 220 (600)
Q Consensus 145 ~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~-~~~-~~~~~li~~~~~~~~~~~a~~~~ 220 (600)
..+.|++..+..+...+..-....|...-..-.. .....+....+++-.. |-. ..-...+..+.+.+++...+..+
T Consensus 16 a~~~~~~~~~~~l~~~l~~~pL~~yl~y~~l~~~l~~~~~~ev~~Fl~~~~~~p~~~~Lr~~~l~~l~~~~~w~~~l~~~ 95 (618)
T 1qsa_A 16 AWDNRQMDVVEQMMPGLKDYPLYPYLEYRQITDDLMNQPAVTVTNFVRANPTLPPARTLQSRFVNELARREDWRGLLAFS 95 (618)
T ss_dssp HHHTTCHHHHHHHSGGGTTSTTHHHHHHHHHHHTGGGCCHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHC
T ss_pred HHHCCCHHHHHHHHHhhcCCCcHHHHHHHHHHhCcccCCHHHHHHHHHHCCCChhHHHHHHHHHHHHHhCCCHHHHHHhc
Confidence 3456888888888776643222222221111122 2245666666666543 111 22344556677778877666643
Q ss_pred HHHHhhhcCCCCCChhhHHHHHHHHHhcCChhhHHHHhcccC---CCCchhHHHHHHHHHhcCChHHHHHHHhhCCCCCh
Q 007519 221 IEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVP---VRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDA 297 (600)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 297 (600)
. ..+.+...-.....+....|+..+|......+= ...+..+..++..+.+.|.+...
T Consensus 96 ~--------~~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~~p~~c~~l~~~~~~~g~lt~~------------ 155 (618)
T 1qsa_A 96 P--------EKPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPNACDKLFSVWRASGKQDPL------------ 155 (618)
T ss_dssp C--------SCCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCTHHHHHHHHHHHTTCSCHH------------
T ss_pred c--------CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHCCCCCHH------------
Confidence 2 123344444556677788888766655444332 34566677788777776655332
Q ss_pred hhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHH-HHHHHHHhcccchhhhHHHHHHHhhhcCCCchh---HHHHH
Q 007519 298 VAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATF-SVLFGAAGATANIDLGRQIHCVLMKTESESDLI---LENCL 373 (600)
Q Consensus 298 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l 373 (600)
..-.-+......|+...|..+... +.++...+ ..++....+..+ +...... ..++.. .+...
T Consensus 156 -~~~~R~~~al~~~~~~~a~~l~~~-----l~~~~~~~a~~~~al~~~p~~---~~~~~~~-----~~~~~~~~~~~~~~ 221 (618)
T 1qsa_A 156 -AYLERIRLAMKAGNTGLVTVLAGQ-----MPADYQTIASAIISLANNPNT---VLTFART-----TGATDFTRQMAAVA 221 (618)
T ss_dssp -HHHHHHHHHHHTTCHHHHHHHHHT-----CCGGGHHHHHHHHHHHHCGGG---HHHHHHH-----SCCCHHHHHHHHHH
T ss_pred -HHHHHHHHHHHCCCHHHHHHHHHh-----CCHHHHHHHHHHHHHHhChHh---HHHHHhc-----cCCChhhHHHHHHH
Confidence 122234556677888877766543 23443322 223333222222 2222111 122211 22222
Q ss_pred HHHHHhcCChHHHHHHHhcCC---CCChh----hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhccc
Q 007519 374 ISMYAKCGVIDNAYNIFSNMV---SRDLV----SWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHA 446 (600)
Q Consensus 374 ~~~~~~~~~~~~A~~~~~~~~---~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 446 (600)
+.-+.+ .+.+.|...+.... ..+.. .+..+.......+...++...+...... .++.......+....+.
T Consensus 222 ~~rlar-~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~e~~~r~Alr~ 298 (618)
T 1qsa_A 222 FASVAR-QDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR--SQSTSLIERRVRMALGT 298 (618)
T ss_dssp HHHHHH-HCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT--CCCHHHHHHHHHHHHHH
T ss_pred HHHHHh-cCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc--CCChHHHHHHHHHHHHC
Confidence 333333 47899999987664 12222 2233333334445356677777765543 34444444444445577
Q ss_pred CchHHHHHHHHHHHhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHhhhhCCHHHHHHHHH
Q 007519 447 GLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAK 526 (600)
Q Consensus 447 g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~g~~~~a~~~~~ 526 (600)
|+++.|.+.|+.+... ......-..-++.++...|+.++|..+|..+-... +|..++.+- +.|.... .
T Consensus 299 ~d~~~a~~~~~~l~~~--~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~~---~fYg~lAa~--~Lg~~~~-~---- 366 (618)
T 1qsa_A 299 GDRRGLNTWLARLPME--AKEKDEWRYWQADLLLERGREAEAKEILHQLMQQR---GFYPMVAAQ--RIGEEYE-L---- 366 (618)
T ss_dssp TCHHHHHHHHHHSCTT--GGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC---SHHHHHHHH--HTTCCCC-C----
T ss_pred CCHHHHHHHHHHcccc--ccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcCC---ChHHHHHHH--HcCCCCC-C----
Confidence 9999999999988642 11134445667888899999999999998875322 333333322 2232100 0
Q ss_pred HHHhhCCCCC-----CcHHHHhHHHHhhCCcHHHHHHHHHHhh
Q 007519 527 RLLELDPLNA-----PAHVVLCNIYAASGRHVEEHKLRMDMGL 564 (600)
Q Consensus 527 ~~~~~~p~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 564 (600)
......+... ......+..+...|...+|...+..+.+
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~ 409 (618)
T 1qsa_A 367 KIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVK 409 (618)
T ss_dssp CCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CCCCCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHh
Confidence 0000111011 1123445667788999999886666543
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=94.27 E-value=0.12 Score=38.51 Aligned_cols=64 Identities=6% Similarity=-0.018 Sum_probs=33.4
Q ss_pred HHHHHHhcccCchHHHHHHHHHHHhhcCC-----CCCcchHHHHHHHHhhcCChHHHHHHHHhCC-CCCC
Q 007519 437 LGILSACSHAGLVSRGWELFNAMFDVYKI-----QPGPEHYVSMINLLGRAGKIKEAEEFVLRLP-FEPD 500 (600)
Q Consensus 437 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-----~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~ 500 (600)
..+...+...|+++.|...++.+.+...- .+...++..|+.+|.+.|++++|...++++. ..|+
T Consensus 9 ~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~ 78 (104)
T 2v5f_A 9 FELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPE 78 (104)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC
Confidence 34444455555555555555555443210 1124455666666666666666666666553 4443
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=94.16 E-value=0.15 Score=40.00 Aligned_cols=101 Identities=10% Similarity=0.119 Sum_probs=65.7
Q ss_pred CChhHHHHHHHHhcccCch------HHHHHHHHHHHhhcCCCCCc-chHHHHHHH------HhhcCChHHHHHHHHhCC-
Q 007519 431 PNSVTFLGILSACSHAGLV------SRGWELFNAMFDVYKIQPGP-EHYVSMINL------LGRAGKIKEAEEFVLRLP- 496 (600)
Q Consensus 431 p~~~~~~~l~~~~~~~g~~------~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~------~~~~g~~~~A~~~~~~~~- 496 (600)
-|..+|...+....+.|+. ++.+++|+++.. .++|+. ..|...+.. +...++.++|.++|+.+.
T Consensus 11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia--~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIE--ALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARA 88 (161)
T ss_dssp CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHH--HSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHH--cCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 3556777777777777888 888889998887 455542 222222211 234578888888887763
Q ss_pred C-CCCHHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCC
Q 007519 497 F-EPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPL 534 (600)
Q Consensus 497 ~-~p~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~ 534 (600)
. +-=...|.....--. ++|+...|.+++.+++.+.|.
T Consensus 89 ~hKkFAKiwi~~AqFEi-Rqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 89 NCKKFAFVHISFAQFEL-SQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp HCTTBHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHTTCB
T ss_pred HhHHHHHHHHHHHHHHH-HcccHHHHHHHHHHHhccCCC
Confidence 1 111445555544445 788888888888888888874
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=93.82 E-value=0.93 Score=35.64 Aligned_cols=113 Identities=11% Similarity=0.163 Sum_probs=76.5
Q ss_pred CCChhhHHHHHHHHHhcCCh------HHHHHHHHHHHHcCCCCChh----HHHHHH---HHhcccCchHHHHHHHHHHHh
Q 007519 395 SRDLVSWNSMVMGFSHHGLA------NETLKVFESMLESGTHPNSV----TFLGIL---SACSHAGLVSRGWELFNAMFD 461 (600)
Q Consensus 395 ~~~~~~~~~l~~~~~~~~~~------~~a~~~~~~m~~~~~~p~~~----~~~~l~---~~~~~~g~~~~a~~~~~~~~~ 461 (600)
+.|..+|-..+...-+.|+. ++..++|++.... ++|+.. .|..+. ..+...++.++|.++|+.+..
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARA 88 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 56778888888888888888 8888888888775 677542 111111 112344889999999998876
Q ss_pred hcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHH
Q 007519 462 VYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLP-FEP-DHRIWGALLGA 510 (600)
Q Consensus 462 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~ 510 (600)
. .-.. ..+|...+..-.+.|++..|.+++.+.. ..| +...+...+..
T Consensus 89 ~-hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~a~~n 137 (161)
T 4h7y_A 89 N-CKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEIALRN 137 (161)
T ss_dssp H-CTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHHHHHH
T ss_pred H-hHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHHHHHh
Confidence 5 3233 7777777788889999999999997753 334 23344444443
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.28 E-value=2.2 Score=41.48 Aligned_cols=143 Identities=9% Similarity=0.002 Sum_probs=69.7
Q ss_pred CChhHHHHHhhcCCC---------CCcccHHHHHHHHHhcCCHhHHHHHHHhcccCC---chhHHHHH----HHHHhcCC
Q 007519 118 GELNEARKVFNSMPI---------KNVISWNAMIAGYVECCMMGEAIVLFEEMEERN---VVTWTSMI----SGYCRAGE 181 (600)
Q Consensus 118 ~~~~~a~~~~~~~~~---------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~l~----~~~~~~g~ 181 (600)
|++++|++.+-.+.+ ........++..|...|+++...+.+..+.+.- ......++ ........
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~~ 109 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKS 109 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHCT
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCc
Confidence 567777665533321 123345566677777788777666555443211 11122222 22222232
Q ss_pred hh--HHHHHHccCCC---CC-------cchHHHHHHHHHhcCChhHHHHHHHHHHhhhcCCCCCC---hhhHHHHHHHHH
Q 007519 182 VE--EGYCLFRRMPR---KN-------VVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCN---VQSCNSMINGYI 246 (600)
Q Consensus 182 ~~--~A~~~~~~~~~---~~-------~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~ 246 (600)
.+ .-..+.+.+.. .- ......|...+...|++.+|..++.++... ..|..+. ...+...++.|.
T Consensus 110 ~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~E-t~~~~~~~~kve~~l~q~rl~l 188 (445)
T 4b4t_P 110 LDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVE-TYGSMEMSEKIQFILEQMELSI 188 (445)
T ss_dssp THHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-HCSSSCHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH-HHhcccHHHHHHHHHHHHHHHH
Confidence 22 22233333321 11 112345666677777777777777776543 1121111 234555556666
Q ss_pred hcCChhhHHHHhccc
Q 007519 247 RFGRLEEAQNLFDTV 261 (600)
Q Consensus 247 ~~~~~~~a~~~~~~~ 261 (600)
..+++.+|..++.++
T Consensus 189 ~~~d~~~a~~~~~ki 203 (445)
T 4b4t_P 189 LKGDYSQATVLSRKI 203 (445)
T ss_dssp HHTCHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHH
Confidence 666666666665554
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.27 E-value=0.2 Score=40.17 Aligned_cols=128 Identities=5% Similarity=0.023 Sum_probs=66.7
Q ss_pred CCCCccchhHHHHHHHhcCChhhHHHHhccCCC-----CCc-------chHHHHHHHHHcCCChhHHHHHhhhcCC----
Q 007519 7 PKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQ-----RNV-------VSYNAMLSGFLQNGRLSEARRLFEEMPE---- 70 (600)
Q Consensus 7 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~~~~---- 70 (600)
|+.+...+..-++.+...|.++.|+-+.+.+.. |+. .++..+.+++...|++..|...|++.++
T Consensus 16 ~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~ 95 (167)
T 3ffl_A 16 PRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKA 95 (167)
T ss_dssp -----CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHC
T ss_pred CCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHH
Confidence 444555666777788888888888877777542 332 1456667778888888888888887542
Q ss_pred --CChhhHHHHHHHHHhcCChHHHHHHhhcCCCCCceeHHHHHHHHHHCCChhHHHHHhhcCCC--CCcccHHHHHH
Q 007519 71 --RNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPI--KNVISWNAMIA 143 (600)
Q Consensus 71 --~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~ 143 (600)
.+..+...+.. ...... -+. ...+.+....+..++.+.+++++|+.+++.++. .++..-..|.+
T Consensus 96 l~k~~s~~~~~~~----~ss~p~---s~~--~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~Rt~kvnm~Lak 163 (167)
T 3ffl_A 96 LSKTSKVRPSTGN----SASTPQ---SQC--LPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSRQRTPKINMLLAN 163 (167)
T ss_dssp C---------------------------C--CCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGGCCHHHHHHHHH
T ss_pred HhcCCCccccccc----cCCCcc---ccc--ccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCchhcCHHHHHHHHH
Confidence 11111111100 000000 000 012233444567777777777777777777754 44444444433
|
| >1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 | Back alignment and structure |
|---|
Probab=93.12 E-value=4.7 Score=36.17 Aligned_cols=17 Identities=12% Similarity=-0.144 Sum_probs=6.2
Q ss_pred CCcchHHHHHHHHHhcC
Q 007519 195 KNVVSWTAMIGGFAWNG 211 (600)
Q Consensus 195 ~~~~~~~~li~~~~~~~ 211 (600)
++...-...+.++...|
T Consensus 140 ~~~~vR~~a~~aL~~~~ 156 (280)
T 1oyz_A 140 KSTNVRRATAFAISVIN 156 (280)
T ss_dssp SCHHHHHHHHHHHHTC-
T ss_pred CCHHHHHHHHHHHHhcC
Confidence 33333333344444433
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=92.76 E-value=2.6 Score=32.39 Aligned_cols=139 Identities=9% Similarity=-0.048 Sum_probs=79.7
Q ss_pred HhcCChhHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHhcCChhhHHHHhcccCCC-CchhHHHHHHHHHhcCChHHHH
Q 007519 208 AWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVR-DEISWTSMIDGYLSVGQVSNAY 286 (600)
Q Consensus 208 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~ 286 (600)
.-.|.+++..++..+.... .+..-||.++--....-+=+-..+.++.+-+- |. ..+|++....
T Consensus 18 ildG~v~qGveii~k~~~s------sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDi----------s~C~NlKrVi 81 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKS------STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDL----------DKCQNLKSVV 81 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHH------SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCG----------GGCSCTHHHH
T ss_pred HHhhhHHHHHHHHHHHcCC------CCccccceeeeecchhhchhHHHHHHHHHhhhcCc----------HhhhcHHHHH
Confidence 3456677777776666642 33445555555555555544444444444311 11 1223333333
Q ss_pred HHHhhCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhcccchhhhHHHHHHHhhhcCC
Q 007519 287 YLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESE 364 (600)
Q Consensus 287 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 364 (600)
..+-.+. .+....+..+..+..+|.-+.-.+++..+.. +.+|++..+..+..+|.+.|+..++.+++.++-+.|++
T Consensus 82 ~C~~~~n-~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 82 ECGVINN-TLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHTT-CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhc-chHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 3332222 2333455566677777877777777777544 24677777777777888888888888888877777764
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=92.42 E-value=13 Score=39.53 Aligned_cols=254 Identities=13% Similarity=0.090 Sum_probs=134.7
Q ss_pred HHHhcCChhHHHHHHccCCC----CCcc--hHHHHHHHHHhcCChhHHHHHHHHHHhhhcCCCC-----CChhhHHHHHH
Q 007519 175 GYCRAGEVEEGYCLFRRMPR----KNVV--SWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNN-----CNVQSCNSMIN 243 (600)
Q Consensus 175 ~~~~~g~~~~A~~~~~~~~~----~~~~--~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~~~l~~ 243 (600)
+....|+.++++.+++.... .+.. .-..+.-+....|..+++..++...... ++.+. +....-.++.-
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~-~~~~~~~~~~~~ir~gAaLGL 461 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVE-NSGTSGDEDVDVLLHGASLGI 461 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHH-HSSCCSCHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcC-ccccccccccHHHHHHHHHHH
Confidence 45677888999999988764 1222 2223344455666666788888777653 11000 11111112222
Q ss_pred HH--HhcCChhhHHHHhcccC-CCCchhH--H--HHHHHHHhcCChHHHHHHHhhCCC-CChh--hHHHHHHHHHhCCCh
Q 007519 244 GY--IRFGRLEEAQNLFDTVP-VRDEISW--T--SMIDGYLSVGQVSNAYYLFHNMPD-RDAV--AWTAMISGLVQNELF 313 (600)
Q Consensus 244 ~~--~~~~~~~~a~~~~~~~~-~~~~~~~--~--~l~~~~~~~~~~~~A~~~~~~~~~-~~~~--~~~~li~~~~~~g~~ 313 (600)
++ .-.++ +++...+..+. ..+..+- . ++...+.-.|+-+....++..+.+ .+.. -.-.+.-++...|+.
T Consensus 462 Gla~~GS~~-eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~ 540 (963)
T 4ady_A 462 GLAAMGSAN-IEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQ 540 (963)
T ss_dssp HHHSTTCCC-HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCG
T ss_pred HHHhcCCCC-HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCCh
Confidence 22 22333 34444444443 3332221 1 233334455666666666655432 2222 223334455578899
Q ss_pred hHHHHHHHHHHHCCCCCChhHHHH---HHHHHhcccchhhhHHHHHHHhhhcCCCchhHHHHHHHHHHhcCChHHHHHHH
Q 007519 314 VEATYLFMEMRAHGVPPLNATFSV---LFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIF 390 (600)
Q Consensus 314 ~~a~~~~~~m~~~g~~p~~~~~~~---l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 390 (600)
+.+..+.+.+... .....-|.. +.-+|+..|+......++..+.... ..++.-...+.-++...|+.+.+.+++
T Consensus 541 e~~~~li~~L~~~--~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv 617 (963)
T 4ady_A 541 ELADDLITKMLAS--DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIV 617 (963)
T ss_dssp GGGHHHHHHHHHC--SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHT
T ss_pred HHHHHHHHHHHhC--CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHH
Confidence 9888888888764 222233332 3346788889888888888777542 223333333333444567777777887
Q ss_pred hcCC-CCChhhH--HHHHHHHHhcCCh-HHHHHHHHHHHHcCCCCChhHH
Q 007519 391 SNMV-SRDLVSW--NSMVMGFSHHGLA-NETLKVFESMLESGTHPNSVTF 436 (600)
Q Consensus 391 ~~~~-~~~~~~~--~~l~~~~~~~~~~-~~a~~~~~~m~~~~~~p~~~~~ 436 (600)
+.+. ..|..+- ..+..+....|.. .+++.++..+.. .++..+-
T Consensus 618 ~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~---D~d~~Vr 664 (963)
T 4ady_A 618 QLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK---DPVDFVR 664 (963)
T ss_dssp TTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT---CSSHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc---CCCHHHH
Confidence 7654 2333332 3333444444444 578888888864 4454433
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.35 E-value=0.49 Score=48.96 Aligned_cols=53 Identities=13% Similarity=-0.076 Sum_probs=48.5
Q ss_pred HHHhhhhCCHHHHHHHHHHHHhhCCCCCCcHHHHhHHHHhhCCcHHHHHHHHHH
Q 007519 509 GACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDM 562 (600)
Q Consensus 509 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 562 (600)
..|. ..|+++.|+.+.+++....|.+-.+|..|+.+|...|+++.|+-.+..+
T Consensus 345 ~FLl-~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 345 NFLL-NRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHH-HTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHh-ccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 3455 8899999999999999999999999999999999999999999987766
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=91.65 E-value=0.91 Score=36.46 Aligned_cols=27 Identities=15% Similarity=0.076 Sum_probs=17.6
Q ss_pred chHHHHHHHHhhcCChHHHHHHHHhCC
Q 007519 470 EHYVSMINLLGRAGKIKEAEEFVLRLP 496 (600)
Q Consensus 470 ~~~~~l~~~~~~~g~~~~A~~~~~~~~ 496 (600)
+.-.-+..+|.+.|++++|+.+++.++
T Consensus 123 Elkykia~C~~~l~~~~~Ai~~Le~Ip 149 (167)
T 3ffl_A 123 EVKYKLAECYTVLKQDKDAIAILDGIP 149 (167)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence 344446666677777777777777766
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=90.48 E-value=18 Score=40.17 Aligned_cols=143 Identities=14% Similarity=0.026 Sum_probs=86.1
Q ss_pred HHHHHHhcccchhhhHHHHHHHhhhcCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC----C----------------
Q 007519 337 VLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVS----R---------------- 396 (600)
Q Consensus 337 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~---------------- 396 (600)
.++..+...+..+.+.++..... .++...-.+..++...|++++|.+.|.+... .
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~~-----~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~ 891 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWLN-----SDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEK 891 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHSC-----CCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHT
T ss_pred HHHHHHHHhhhHHHHHHHhhhcc-----CCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccc
Confidence 45555666666666665544322 2333334566778888899999888877631 0
Q ss_pred ------ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh----hHHHHHHHHhcccCchHHHHHHHHHHHhhcCCC
Q 007519 397 ------DLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNS----VTFLGILSACSHAGLVSRGWELFNAMFDVYKIQ 466 (600)
Q Consensus 397 ------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 466 (600)
-..-|..++..+.+.+.++.++++-+...+...+-+. ..|..++.++...|++++|...+-.+... .
T Consensus 892 ~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~---~ 968 (1139)
T 4fhn_B 892 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTT---P 968 (1139)
T ss_dssp TTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHS---S
T ss_pred ccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCH---H
Confidence 0123566777777788888887777766654211111 14566777778888888887777655432 1
Q ss_pred CCcchHHHHHHHHhhcCChHH
Q 007519 467 PGPEHYVSMINLLGRAGKIKE 487 (600)
Q Consensus 467 p~~~~~~~l~~~~~~~g~~~~ 487 (600)
--...+..|+..++..|..+.
T Consensus 969 ~r~~cLr~LV~~lce~~~~~~ 989 (1139)
T 4fhn_B 969 LKKSCLLDFVNQLTKQGKINQ 989 (1139)
T ss_dssp SCHHHHHHHHHHHHHHCCHHH
T ss_pred HHHHHHHHHHHHHHhCCChhh
Confidence 234456666666666655443
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=88.58 E-value=1.7 Score=33.24 Aligned_cols=86 Identities=15% Similarity=0.040 Sum_probs=57.5
Q ss_pred ChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccCchHH---HHHHHHHHHhhcCCCC--CcchHHHHHHHHhhcCChHH
Q 007519 413 LANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSR---GWELFNAMFDVYKIQP--GPEHYVSMINLLGRAGKIKE 487 (600)
Q Consensus 413 ~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~---a~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~ 487 (600)
....+.+-|.+....| .|+..+--.+..++.+..+... ++.+++.+.+. -.| .......|+-++.+.|++++
T Consensus 16 ~l~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~--~~p~~~Rd~lY~LAvg~yklg~Y~~ 92 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK--GSKEEQRDYVFYLAVGNYRLKEYEK 92 (126)
T ss_dssp HHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT--SCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHhhhHHH
Confidence 3445556666655555 3666655566667777665544 88888887763 224 35566678888899999999
Q ss_pred HHHHHHhCC-CCCCH
Q 007519 488 AEEFVLRLP-FEPDH 501 (600)
Q Consensus 488 A~~~~~~~~-~~p~~ 501 (600)
|.+.++.+. ..|+.
T Consensus 93 A~~~~~~lL~~eP~n 107 (126)
T 1nzn_A 93 ALKYVRGLLQTEPQN 107 (126)
T ss_dssp HHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHhCCCC
Confidence 999988864 55543
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=88.52 E-value=0.82 Score=43.62 Aligned_cols=49 Identities=18% Similarity=0.146 Sum_probs=28.1
Q ss_pred hhCCHHHHHHHHHHHHhhCCCCCCcHHHHhHHHHhhCCcHHHHHHHHHH
Q 007519 514 CEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDM 562 (600)
Q Consensus 514 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 562 (600)
..|+.++++..+++++..+|-+...+..++.++.+.|+..+|.+.++..
T Consensus 183 ~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~ 231 (388)
T 2ff4_A 183 ACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRV 231 (388)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5555555555555555555555555555556666666665555544443
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=88.51 E-value=7.7 Score=43.09 Aligned_cols=186 Identities=12% Similarity=0.078 Sum_probs=111.6
Q ss_pred HHHHHHHHHhcCChhhHHHHhcccCCCCchhHHHHHHHHHhcCChHHHHHHHhhCCC----C------------------
Q 007519 238 CNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPD----R------------------ 295 (600)
Q Consensus 238 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~------------------ 295 (600)
...++..+...+..+.+.++.... +.++...-.+..+|...|++++|...|.+... .
T Consensus 815 ~~~l~~~l~~~~~~~~~~~l~~~~-~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~ 893 (1139)
T 4fhn_B 815 VTELVEKLFLFKQYNACMQLIGWL-NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYH 893 (1139)
T ss_dssp HHHHHHHHHHHSCTTHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhc-cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccccc
Confidence 334566667777777776655444 44555555666777888888888888876532 0
Q ss_pred ----ChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCh----hHHHHHHHHHhcccchhhhHHHHHHHhhhcCCCch
Q 007519 296 ----DAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLN----ATFSVLFGAAGATANIDLGRQIHCVLMKTESESDL 367 (600)
Q Consensus 296 ----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 367 (600)
-..-|..++..+.+.+.++.++++-....+..-+-+. ..|..+++++...+++++|...+..+.....+ .
T Consensus 894 ~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r--~ 971 (1139)
T 4fhn_B 894 HQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK--K 971 (1139)
T ss_dssp SCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC--H
T ss_pred ccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH--H
Confidence 1124677888888899999888888776654322221 14677888888999999998887665544332 2
Q ss_pred hHHHHHHHHHHhc------------CChHHHHHHHhcCC------CCChhhHHHHHHHHHhcCChHHH-HHHHHHHHH
Q 007519 368 ILENCLISMYAKC------------GVIDNAYNIFSNMV------SRDLVSWNSMVMGFSHHGLANET-LKVFESMLE 426 (600)
Q Consensus 368 ~~~~~l~~~~~~~------------~~~~~A~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~a-~~~~~~m~~ 426 (600)
.....|+...+.. |..++..+++..-- ...+.-|..|=.-+..+|++.+| .-+|+....
T Consensus 972 ~cLr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~R 1049 (1139)
T 4fhn_B 972 SCLLDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKLSR 1049 (1139)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHHHH
Confidence 3334455444443 33455555553221 11122344444445667777655 445555543
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=88.34 E-value=6.1 Score=34.72 Aligned_cols=127 Identities=13% Similarity=0.072 Sum_probs=67.4
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCCCcchHHHHHHHHhhcCChH
Q 007519 407 GFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIK 486 (600)
Q Consensus 407 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 486 (600)
.+.+.|+.+++++.+..-.+.. +-|...-..++..+|-.|++++|.+-++.+.+. .|+...-..+..-+.++ +
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l---~p~~~~~a~~yr~lI~a---E 78 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL---FPEYLPGASQLRHLVKA---A 78 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHH---H
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh---CchhhHHHHHHHHHHHH---H
Confidence 4456677777777777666642 334444555667777888888888777777653 55432222121111111 1
Q ss_pred HHHH-HHHh--CC--CCCCHHHHHHHHHHHh-hhhCCHHHHHHHHHHHHhhCCCCCCcHH
Q 007519 487 EAEE-FVLR--LP--FEPDHRIWGALLGACG-FCEGNAEIAEHAAKRLLELDPLNAPAHV 540 (600)
Q Consensus 487 ~A~~-~~~~--~~--~~p~~~~~~~l~~~~~-~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 540 (600)
...+ +|.- .+ ......-...++.+.. ...|+.++|..+-.++++..|..+....
T Consensus 79 ~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~~G~~~ 138 (273)
T 1zbp_A 79 QARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFLAN 138 (273)
T ss_dssp HHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEEET
T ss_pred HHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcccCCCcC
Confidence 2221 2211 11 1112222333333322 1568888888888888887775555433
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=88.12 E-value=6.4 Score=40.82 Aligned_cols=53 Identities=9% Similarity=0.017 Sum_probs=45.0
Q ss_pred HHhcccCchHHHHHHHHHHHhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhCC
Q 007519 441 SACSHAGLVSRGWELFNAMFDVYKIQP-GPEHYVSMINLLGRAGKIKEAEEFVLRLP 496 (600)
Q Consensus 441 ~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 496 (600)
.-|...|+++.|+++-+++... .| +-.+|..|+.+|...|+++.|+-.++.+|
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~~---aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTEL---ALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH---CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHhccCcHHHHHHHHHHHHhc---CchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 3456789999999999988854 67 57899999999999999999999998886
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=87.72 E-value=1.6 Score=33.46 Aligned_cols=72 Identities=13% Similarity=0.024 Sum_probs=45.0
Q ss_pred CCCcchHHHHHHHHhhcCChH---HHHHHHHhCC-CCC-CHHH-HHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCCc
Q 007519 466 QPGPEHYVSMINLLGRAGKIK---EAEEFVLRLP-FEP-DHRI-WGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPA 538 (600)
Q Consensus 466 ~p~~~~~~~l~~~~~~~g~~~---~A~~~~~~~~-~~p-~~~~-~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 538 (600)
.|++.+--.++++++++...+ +++.+++++- ..| ...- +-.+.-++. +.|+++.|.+..+.+++.+|+|..+
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~y-klgdY~~Ar~y~d~lL~~eP~N~QA 114 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCY-KLGEYSMAKRYVDTLFEHERNNKQV 114 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHTTCTTCHHH
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHH-HhhhHHHHHHHHHHHHhhCCCCHHH
Confidence 456666666777777776543 4556665542 334 2333 333444555 8888888888888888888865433
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=87.56 E-value=2.2 Score=30.74 Aligned_cols=63 Identities=19% Similarity=0.193 Sum_probs=46.3
Q ss_pred ChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCCCcchHHHHHH
Q 007519 413 LANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMIN 477 (600)
Q Consensus 413 ~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 477 (600)
+.-+..+-++.+....+.|++......+++|-+.+++..|.++++-++.+ ..+...+|..++.
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K--~~~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK--AGPHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--hcCchhhHHHHHH
Confidence 45566677777777778888888888888888888888888888888765 3333445666553
|
| >2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=87.04 E-value=6.1 Score=28.28 Aligned_cols=58 Identities=17% Similarity=0.169 Sum_probs=38.3
Q ss_pred HHHhcCChHHHHHHHhhCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHH
Q 007519 275 GYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATF 335 (600)
Q Consensus 275 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~ 335 (600)
.+...|++++|..+.+.+..||...|.++.. .+.|-.+++...+.++..+| .|....|
T Consensus 48 SLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~sg-~p~~q~F 105 (115)
T 2uwj_G 48 SLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGGSS-DPALADF 105 (115)
T ss_dssp HHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHTCS-SHHHHHH
T ss_pred HHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC-CHHHHHH
Confidence 4556777777777777777777777766543 46777777777777777665 4444444
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=87.04 E-value=6.1 Score=30.79 Aligned_cols=70 Identities=13% Similarity=0.022 Sum_probs=48.4
Q ss_pred CCCcchHHHHHHHHhhcCChH---HHHHHHHhCC-CCC-CHHHHHH-HHHHHhhhhCCHHHHHHHHHHHHhhCCCCC
Q 007519 466 QPGPEHYVSMINLLGRAGKIK---EAEEFVLRLP-FEP-DHRIWGA-LLGACGFCEGNAEIAEHAAKRLLELDPLNA 536 (600)
Q Consensus 466 ~p~~~~~~~l~~~~~~~g~~~---~A~~~~~~~~-~~p-~~~~~~~-l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 536 (600)
.|+..+--.+++++.++...+ ++..+++.+- ..| +..-+.. +.-++. +.|++++|.++.+.+++.+|+|.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~y-kl~~Y~~Ar~y~d~lL~~eP~n~ 111 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCY-KLGEYSMAKRYVDTLFEHERNNK 111 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHTCCCCH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHH-HhhhHHHHHHHHHHHHhcCCCcH
Confidence 467777777888888877554 4566666653 334 3444433 334566 89999999999999999999554
|
| >2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=86.93 E-value=5 Score=28.76 Aligned_cols=58 Identities=16% Similarity=0.150 Sum_probs=37.7
Q ss_pred HHHhcCChHHHHHHHhhCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHH
Q 007519 275 GYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATF 335 (600)
Q Consensus 275 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~ 335 (600)
.+...|++++|..+.+.+..||...|.++.. .+.|..+++...+.++..+| .|....|
T Consensus 49 SLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~sg-~p~~q~F 106 (116)
T 2p58_C 49 SLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLARSQ-DPRIQTF 106 (116)
T ss_dssp HHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTTCC-CHHHHHH
T ss_pred HHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC-CHHHHHH
Confidence 4566777777777777777777777766553 35666777777776666665 4443333
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=86.43 E-value=20 Score=32.88 Aligned_cols=111 Identities=15% Similarity=0.166 Sum_probs=67.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHH----HHHHHHcCCCCChhHHHHHHHHhcc
Q 007519 370 ENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKV----FESMLESGTHPNSVTFLGILSACSH 445 (600)
Q Consensus 370 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~----~~~m~~~~~~p~~~~~~~l~~~~~~ 445 (600)
|.++..=|.+++++++|.+++-. -...+.+.|+...+-++ ++-..+.+++++......++..+..
T Consensus 38 ~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~ 106 (336)
T 3lpz_A 38 TRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRL 106 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Confidence 34555567788888888877543 23445556666555444 3555556778887777666666544
Q ss_pred cCc--hHH---HHHHHHHHHhhcCCCC--CcchHHHHHHHHhhcCChHHHHHHH
Q 007519 446 AGL--VSR---GWELFNAMFDVYKIQP--GPEHYVSMINLLGRAGKIKEAEEFV 492 (600)
Q Consensus 446 ~g~--~~~---a~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~ 492 (600)
... .+. ..+.+..-.+ .+-.| ++.....++..|.+.|++.+|+..|
T Consensus 107 ~~~~~p~r~~fi~~ai~WS~~-~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 107 FQPGEPVRKRFVKEMIDWSKK-FGDYPAGDPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp SCTTCHHHHHHHHHHHHHHHH-HSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHHHhh-cCCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 332 111 1111222222 23223 6778888999999999999998776
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=84.49 E-value=23 Score=32.08 Aligned_cols=166 Identities=10% Similarity=0.016 Sum_probs=92.2
Q ss_pred HHHHHHHhcCChHHHHHHHhhCCCCChhhHHHHHHHHHhCCChhHHHH----HHHHHHHCCCCCChhHHHHHHHHHhccc
Q 007519 271 SMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATY----LFMEMRAHGVPPLNATFSVLFGAAGATA 346 (600)
Q Consensus 271 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~----~~~~m~~~g~~p~~~~~~~l~~~~~~~~ 346 (600)
++..=|.+.+++++|++++.. -...+.+.|++..|-+ +.+-..+.+++++......++..+....
T Consensus 38 tl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~p 106 (312)
T 2wpv_A 38 TIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAELD 106 (312)
T ss_dssp HHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCC
Confidence 444555556666666655432 2233455666554444 4555666788888888887777765533
Q ss_pred ch-----hhhHHHHHHHhhhcC--CCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHhc---CChHH
Q 007519 347 NI-----DLGRQIHCVLMKTES--ESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHH---GLANE 416 (600)
Q Consensus 347 ~~-----~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~ 416 (600)
.- .-......+..+.|. .-++.....+...|.+.|++.+|+..|-.....+...+..++.-+... |...+
T Consensus 107 ~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~~~e 186 (312)
T 2wpv_A 107 PSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIEDST 186 (312)
T ss_dssp TTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCCHHH
T ss_pred CCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCCcch
Confidence 21 222233333333322 236777888889999999999998877643333455554444433333 33222
Q ss_pred HHHHHHHHHHcCCCCChhHHHHHHHHhcccCchHHHHHHHHHHHhh
Q 007519 417 TLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDV 462 (600)
Q Consensus 417 a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 462 (600)
+-- ..-..++ -|.-.|+...|..++....+.
T Consensus 187 ~dl--------------f~~RaVL-~yL~l~n~~~A~~~~~~f~~~ 217 (312)
T 2wpv_A 187 VAE--------------FFSRLVF-NYLFISNISFAHESKDIFLER 217 (312)
T ss_dssp HHH--------------HHHHHHH-HHHHTTBHHHHHHHHHHHHHH
T ss_pred HHH--------------HHHHHHH-HHHHhcCHHHHHHHHHHHHHH
Confidence 211 1111222 234567888888887776543
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=84.36 E-value=5 Score=38.16 Aligned_cols=67 Identities=13% Similarity=0.114 Sum_probs=40.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccCchHHHHHHHHHHHh----hcCCCCCcch
Q 007519 404 MVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFD----VYKIQPGPEH 471 (600)
Q Consensus 404 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~p~~~~ 471 (600)
++..+...|++++++..+..+... -+-+...+..++.++.+.|+..+|.+.|+.+.+ ..|+.|++.+
T Consensus 177 ~~~~~l~~g~~~~a~~~l~~~~~~-~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 177 KAEAEIACGRASAVIAELEALTFE-HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 445555666666666666666554 244556666666666667776666666665543 2366665443
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=83.98 E-value=26 Score=32.12 Aligned_cols=166 Identities=11% Similarity=0.034 Sum_probs=93.6
Q ss_pred HHHHHHHHhcCChHHHHHHHhhCCCCChhhHHHHHHHHHhCCChhHHHH----HHHHHHHCCCCCChhHHHHHHHHHhcc
Q 007519 270 TSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATY----LFMEMRAHGVPPLNATFSVLFGAAGAT 345 (600)
Q Consensus 270 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~----~~~~m~~~g~~p~~~~~~~l~~~~~~~ 345 (600)
.++..=|.+.+++++|++++.. -...+.+.|+...+-+ +++-+.+.++++|..+...++..+...
T Consensus 39 RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~ 107 (336)
T 3lpz_A 39 RLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLF 107 (336)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC
Confidence 3445556667777777766432 2334555666554433 445666778888888888888777655
Q ss_pred cchh-----hhHHHHHHHhhhc--CCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHH
Q 007519 346 ANID-----LGRQIHCVLMKTE--SESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETL 418 (600)
Q Consensus 346 ~~~~-----~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 418 (600)
..-+ -..+...+-.+.| ..-++.....+...|.+.+++.+|+..|-....+++..+..++.-+...+...++
T Consensus 108 ~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~e~- 186 (336)
T 3lpz_A 108 QPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESHTA- 186 (336)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGGGH-
T ss_pred CCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCccH-
Confidence 4321 1222233333333 2336777788889999999999999888533333345665554444333322111
Q ss_pred HHHHHHHHcCCCCChhHHHHHHHHhcccCchHHHHHHHHHHHh
Q 007519 419 KVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFD 461 (600)
Q Consensus 419 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 461 (600)
+...-..++ -|.-.+++..|..+++...+
T Consensus 187 -------------dlfiaRaVL-~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 187 -------------PLYCARAVL-PYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp -------------HHHHHHHHH-HHHHTTCHHHHHHHHHHHHH
T ss_pred -------------HHHHHHHHH-HHHHhCCHHHHHHHHHHHHH
Confidence 111122222 34456777777776665554
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=83.76 E-value=6.1 Score=30.76 Aligned_cols=68 Identities=3% Similarity=-0.216 Sum_probs=50.8
Q ss_pred CCCCHHHHHHHHHHHhhhhC---CHHHHHHHHHHHHhhCCC-CCCcHHHHhHHHHhhCCcHHHHHHHHHHhhc
Q 007519 497 FEPDHRIWGALLGACGFCEG---NAEIAEHAAKRLLELDPL-NAPAHVVLCNIYAASGRHVEEHKLRMDMGLK 565 (600)
Q Consensus 497 ~~p~~~~~~~l~~~~~~~~g---~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 565 (600)
..|+..+--.+..++. ++. +..+++.+++.+....|. .......|+-++.+.|++++|.++.+.+.+.
T Consensus 35 ~~vs~~t~F~YAw~Lv-~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 35 PTATIQSRFNYAWGLI-KSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp TTSCHHHHHHHHHHHH-HSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred CCCcHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 3566665555555555 444 567899999999998884 3466778899999999999999977766543
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=83.62 E-value=30 Score=32.66 Aligned_cols=57 Identities=14% Similarity=-0.009 Sum_probs=34.6
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHCCCCCChh-----HHHHHHHHHhcccchhhhHHHHHHH
Q 007519 302 AMISGLVQNELFVEATYLFMEMRAHGVPPLNA-----TFSVLFGAAGATANIDLGRQIHCVL 358 (600)
Q Consensus 302 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-----~~~~l~~~~~~~~~~~~a~~~~~~~ 358 (600)
.++..|...|++.+|..++.++.+.=-..|.. .+..-+..|...++...+...+...
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a 165 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSA 165 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 57788889999999998888887642122222 2233334455556666665555543
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=82.84 E-value=11 Score=27.17 Aligned_cols=63 Identities=10% Similarity=-0.032 Sum_probs=43.3
Q ss_pred ChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhcccchhhhHHHHHHHhhhcCCCchhHHHHHHH
Q 007519 312 LFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLIS 375 (600)
Q Consensus 312 ~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 375 (600)
+.=++.+-++.+....+.|++......+++|.+.+++..|.++++-+...- .....+|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHHH
Confidence 344566777777777788888888888888888888888888887554322 222345655553
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=82.60 E-value=36 Score=32.87 Aligned_cols=185 Identities=9% Similarity=0.053 Sum_probs=103.5
Q ss_pred CChhHHHHHHHHHHHC-----CCCCChhHHHHHHHHHhcccchhhhHHHHHHHhhh-cCCCchh--HHHHHHHHHHhcCC
Q 007519 311 ELFVEATYLFMEMRAH-----GVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKT-ESESDLI--LENCLISMYAKCGV 382 (600)
Q Consensus 311 g~~~~a~~~~~~m~~~-----g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~--~~~~l~~~~~~~~~ 382 (600)
|+++.|++.+-.+.+. ...........++..|...++++...+.+..+.+. |...... +...++........
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~~ 109 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKS 109 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHCT
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCc
Confidence 4455555555444332 12333444555666666666666665555543332 2211111 11112222222222
Q ss_pred h--HHHHHHHhcCC---CC-------ChhhHHHHHHHHHhcCChHHHHHHHHHHHHc--CCCCC---hhHHHHHHHHhcc
Q 007519 383 I--DNAYNIFSNMV---SR-------DLVSWNSMVMGFSHHGLANETLKVFESMLES--GTHPN---SVTFLGILSACSH 445 (600)
Q Consensus 383 ~--~~A~~~~~~~~---~~-------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~--~~~p~---~~~~~~l~~~~~~ 445 (600)
. +.-..+.+... .. .......|...+...|++.+|..++..+... |..+. ...+...++.|..
T Consensus 110 ~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~ 189 (445)
T 4b4t_P 110 LDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSIL 189 (445)
T ss_dssp THHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 2 22233333332 11 1223456778888999999999999998643 22221 1345566788899
Q ss_pred cCchHHHHHHHHHHHhhc-CCC--CC--cchHHHHHHHHhhcCChHHHHHHHHhC
Q 007519 446 AGLVSRGWELFNAMFDVY-KIQ--PG--PEHYVSMINLLGRAGKIKEAEEFVLRL 495 (600)
Q Consensus 446 ~g~~~~a~~~~~~~~~~~-~~~--p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~ 495 (600)
.+++.+|..++.++.... ... |+ ...+...+..+...+++.+|.+.|.++
T Consensus 190 ~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 190 KGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp HTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 999999999998875321 112 22 345677888888999999998877665
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=82.44 E-value=8.7 Score=29.44 Aligned_cols=63 Identities=19% Similarity=0.193 Sum_probs=48.7
Q ss_pred ChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCCCcchHHHHHH
Q 007519 413 LANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMIN 477 (600)
Q Consensus 413 ~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 477 (600)
|.-+..+-++.+....+.|++......+.+|-+.+++..|.++|+-++.+ ..+...+|..+++
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K--~~~~~~iY~y~lq 130 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK--AGPHKEIYPYVIQ 130 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--cCCchhhHHHHHH
Confidence 44566677777777788899999999999999999999999999988875 3444556766654
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=82.19 E-value=6.7 Score=34.46 Aligned_cols=114 Identities=17% Similarity=0.117 Sum_probs=74.1
Q ss_pred HhcccCchHHHHHHHHHHHhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhCC-CCCCHHHHHHHHHHHhhhhCCHH
Q 007519 442 ACSHAGLVSRGWELFNAMFDVYKIQP-GPEHYVSMINLLGRAGKIKEAEEFVLRLP-FEPDHRIWGALLGACGFCEGNAE 519 (600)
Q Consensus 442 ~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~~~~~~~~g~~~ 519 (600)
...+.|+++++++....-++. .| |...-..|+..||-.|+|++|.+-++... ..|+...-..+.....
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~---~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI------- 75 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKA---SPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLV------- 75 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHT---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHH-------
T ss_pred HHHhCCCHHHHHHHHHHHHHh---CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHH-------
Confidence 456789999999988888765 56 78888899999999999999998887764 5555433222222221
Q ss_pred HHHHHHHHHHh-----hCCCCCC-cHHHHhHHHH--hhCCcHHHHHHHHHHhhc
Q 007519 520 IAEHAAKRLLE-----LDPLNAP-AHVVLCNIYA--ASGRHVEEHKLRMDMGLK 565 (600)
Q Consensus 520 ~a~~~~~~~~~-----~~p~~~~-~~~~l~~~~~--~~g~~~~A~~~~~~~~~~ 565 (600)
.|+..-++.+. .-+..+. -...++.++. ..|+.++|.++.....+.
T Consensus 76 ~aE~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ 129 (273)
T 1zbp_A 76 KAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 129 (273)
T ss_dssp HHHHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc
Confidence 12222333333 1122232 3335555544 569999999988888654
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=81.64 E-value=2.8 Score=32.14 Aligned_cols=67 Identities=3% Similarity=-0.201 Sum_probs=50.0
Q ss_pred CCCHHHHHHHHHHHhhhhC---CHHHHHHHHHHHHhhCCC-CCCcHHHHhHHHHhhCCcHHHHHHHHHHhhc
Q 007519 498 EPDHRIWGALLGACGFCEG---NAEIAEHAAKRLLELDPL-NAPAHVVLCNIYAASGRHVEEHKLRMDMGLK 565 (600)
Q Consensus 498 ~p~~~~~~~l~~~~~~~~g---~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 565 (600)
.|...+--.+..++. ++. +..+++.+++.+.+..|. ....+..|+-++.+.|++++|.++.+.+.+.
T Consensus 37 ~vs~qt~F~yAw~Lv-~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~ 107 (134)
T 3o48_A 37 TATIQSRFNYAWGLI-KSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 107 (134)
T ss_dssp GSCHHHHHHHHHHHH-HSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred CCChhhHHHHHHHHH-cCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 455555444555554 444 566899999999998884 3577889999999999999999977766543
|
| >2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=81.00 E-value=13 Score=26.66 Aligned_cols=61 Identities=21% Similarity=0.212 Sum_probs=46.3
Q ss_pred HHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHH
Q 007519 374 ISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFL 437 (600)
Q Consensus 374 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~ 437 (600)
+..+...|++++|..+.+....||...|-++- -.+.|..+++..-+.++...| .|....|.
T Consensus 46 ~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALc--e~rlGl~s~le~rL~~la~sg-~p~~q~Fa 106 (115)
T 2uwj_G 46 ISSLANQGRYQEALAFAHGNPWPALEPWFALC--EWHLGLGAALDRRLAGLGGSS-DPALADFA 106 (115)
T ss_dssp HHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHH--HHHTTCHHHHHHHHHHHHTCS-SHHHHHHH
T ss_pred HHHHHcchhHHHHHHhcCCCCCchHHHHHHHH--HHhcccHHHHHHHHHHHHhCC-CHHHHHHH
Confidence 44567889999999999999999999887664 356788888888887887765 55544443
|
| >2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=80.40 E-value=14 Score=26.58 Aligned_cols=60 Identities=20% Similarity=0.259 Sum_probs=44.5
Q ss_pred HHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHH
Q 007519 374 ISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTF 436 (600)
Q Consensus 374 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~ 436 (600)
+..+...|++++|..+.+....||...|-++-. .+.|..+++..-+.++...| .|....|
T Consensus 47 ~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~sg-~p~~q~F 106 (116)
T 2p58_C 47 LSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLARSQ-DPRIQTF 106 (116)
T ss_dssp HHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTTCC-CHHHHHH
T ss_pred HHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC-CHHHHHH
Confidence 345678899999999999999999998876644 45677778877777777665 4544444
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 600 | ||||
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 4e-08 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 3e-04 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 6e-04 | |
| d1zbpa1 | 264 | e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V | 0.002 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 53.1 bits (126), Expect = 4e-08
Identities = 52/330 (15%), Positives = 111/330 (33%), Gaps = 13/330 (3%)
Query: 234 NVQSCNSMINGYIRFGRLEEAQNLFDTVPVRD---EISWTSMIDGYLSVGQVSNAYYLFH 290
N + + + + RL+ + + ++ +++++ + Y GQ+ A +
Sbjct: 32 NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYR 91
Query: 291 NMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDL 350
+ I+ + + + A L
Sbjct: 92 HALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRL 151
Query: 351 GRQIHCVLMKTESESDL-ILENCLISMYAKCGVIDNAYNIFSNMVSRD---LVSWNSMVM 406
C L E++ + + + L ++ G I A + F V+ D L ++ ++
Sbjct: 152 EEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGN 211
Query: 407 GFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQ 466
+ + + + L ++V + GL+ + + ++Q
Sbjct: 212 VLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRR---AIELQ 267
Query: 467 PG-PEHYVSMINLLGRAGKIKEAEEFVLR-LPFEPDHRIWGALLGACGFCEGNAEIAEHA 524
P P+ Y ++ N L G + EAE+ L P H L +GN E A
Sbjct: 268 PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRL 327
Query: 525 AKRLLELDPLNAPAHVVLCNIYAASGRHVE 554
++ LE+ P A AH L ++ G+ E
Sbjct: 328 YRKALEVFPEFAAAHSNLASVLQQQGKLQE 357
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.2 bits (95), Expect = 3e-04
Identities = 28/185 (15%), Positives = 61/185 (32%), Gaps = 9/185 (4%)
Query: 371 NCLISMYAKCGVIDNAYNIFSNMVSRDLV---SWNSMVMGFSHHGLANETLKVFESMLE- 426
L ++ + + D A + +S ++ + GL + + + +E
Sbjct: 207 INLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL 266
Query: 427 SGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIK 486
P++ L A G V+ + +N + + + N+ G I+
Sbjct: 267 QPHFPDAYCNLAN--ALKEKGSVAEAEDCYNTALRLCPTHADSLNN--LANIKREQGNIE 322
Query: 487 EAEEFVLR-LPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNI 545
EA + L P+ + L + +G + A K + + P A A+ + N
Sbjct: 323 EAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNT 382
Query: 546 YAASG 550
Sbjct: 383 LKEMQ 387
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.0 bits (92), Expect = 6e-04
Identities = 22/110 (20%), Positives = 40/110 (36%), Gaps = 1/110 (0%)
Query: 477 NLLGRAGKIKEAEEFVLR-LPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLN 535
+ +AG + AE ++ EPD+ LL + F + + H + ++ +PL
Sbjct: 7 HREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLL 66
Query: 536 APAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMF 585
A A+ L N+Y G+ E + + G L
Sbjct: 67 AEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGD 116
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Score = 38.1 bits (88), Expect = 0.002
Identities = 12/83 (14%), Positives = 31/83 (37%), Gaps = 1/83 (1%)
Query: 481 RAGKIKEAEEFVLR-LPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAH 539
G++++A E ++ + P + +G+ E A+ + ++L P P
Sbjct: 8 SEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGA 67
Query: 540 VVLCNIYAASGRHVEEHKLRMDM 562
L ++ A+ + +
Sbjct: 68 SQLRHLVKAAQARKDFAQGAATA 90
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 600 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.91 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.9 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.59 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.53 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.16 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.11 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.07 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.05 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.05 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.05 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.01 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.99 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.91 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.72 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.71 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.61 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.61 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.56 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.56 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.55 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.53 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.52 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.48 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.48 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.46 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.43 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.4 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.27 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.26 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.24 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.17 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.15 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.13 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.05 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.03 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.03 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.01 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.95 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.91 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.86 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.81 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 97.8 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.76 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.75 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.73 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.69 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.64 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.44 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.42 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.38 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.34 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.21 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 97.17 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.08 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 96.8 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 94.97 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 94.89 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 94.74 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 94.68 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 93.75 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 93.31 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 92.25 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 88.12 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 84.38 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.91 E-value=7.5e-22 Score=191.64 Aligned_cols=248 Identities=14% Similarity=0.127 Sum_probs=192.6
Q ss_pred hhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhcccchhhhHHHHHHHhhhcCCCchhHHHHHHHHH
Q 007519 298 VAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMY 377 (600)
Q Consensus 298 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 377 (600)
.............+....+...+....... +.+...+..+...+...++.+.|...+....+.... +...+..+...+
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~ 213 (388)
T d1w3ba_ 136 CVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVL 213 (388)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred cccccccccccccchhhhhHHHHHHhhccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcc-cHHHHHHHhhhh
Confidence 334444455556666666666666665542 223445555566667777777777777766655432 456677788888
Q ss_pred HhcCChHHHHHHHhcCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccCchHHHHH
Q 007519 378 AKCGVIDNAYNIFSNMV---SRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWE 454 (600)
Q Consensus 378 ~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~ 454 (600)
...|++++|...+++.. +.+...+..+...+...|++++|+..|++..+.. +-+...+..+..++...|++++|.+
T Consensus 214 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~ 292 (388)
T d1w3ba_ 214 KEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAED 292 (388)
T ss_dssp HTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHH
T ss_pred hccccHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 88899999988888765 4566778888899999999999999999988752 3345678888889999999999999
Q ss_pred HHHHHHhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhCC-CCCC-HHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhC
Q 007519 455 LFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLP-FEPD-HRIWGALLGACGFCEGNAEIAEHAAKRLLELD 532 (600)
Q Consensus 455 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~ 532 (600)
.++.+... .+.+...+..++.++...|++++|.+.+++.. ..|+ ..++..+...+. ..|++++|+..++++++++
T Consensus 293 ~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~l~ 369 (388)
T d1w3ba_ 293 CYNTALRL--CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQ-QQGKLQEALMHYKEAIRIS 369 (388)
T ss_dssp HHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHH-TTTCCHHHHHHHHHHHTTC
T ss_pred HHHhhhcc--CCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhC
Confidence 99998864 23367788899999999999999999998854 5665 566777888888 9999999999999999999
Q ss_pred CCCCCcHHHHhHHHHhhCC
Q 007519 533 PLNAPAHVVLCNIYAASGR 551 (600)
Q Consensus 533 p~~~~~~~~l~~~~~~~g~ 551 (600)
|+++.++..++.+|.+.||
T Consensus 370 P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 370 PTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp TTCHHHHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHHHHHcCC
Confidence 9999999999999998886
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.90 E-value=1.4e-20 Score=182.59 Aligned_cols=350 Identities=15% Similarity=0.106 Sum_probs=267.3
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhhhcCCCCC-ChhhHHHHHHHHHhcCChhhHHHHhcccC---CCCchhHHHHHHHHHh
Q 007519 203 MIGGFAWNGFHKESLLLFIEMKGICDNGNNC-NVQSCNSMINGYIRFGRLEEAQNLFDTVP---VRDEISWTSMIDGYLS 278 (600)
Q Consensus 203 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~ 278 (600)
+...+.+.|++++|++.++++.+. .| +...+..+..++.+.|++++|...++.+. +.+..++..+..+|.+
T Consensus 5 la~~~~~~G~~~~A~~~~~~~l~~-----~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~ 79 (388)
T d1w3ba_ 5 LAHREYQAGDFEAAERHCMQLWRQ-----EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKE 79 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhh
Confidence 344556677777777777777764 33 35566667777777777777777777665 4455667777777777
Q ss_pred cCChHHHHHHHhhCCC---CChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhcccchhhhHHHH
Q 007519 279 VGQVSNAYYLFHNMPD---RDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIH 355 (600)
Q Consensus 279 ~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 355 (600)
.|++++|+..+..... .+...+..........+....+........... .................+....+...+
T Consensus 80 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (388)
T d1w3ba_ 80 RGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACY 158 (388)
T ss_dssp HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred hccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccccchhhhhHHHH
Confidence 7888888777766544 233444445555555666666666666655543 333444444555566667777777777
Q ss_pred HHHhhhcCCCchhHHHHHHHHHHhcCChHHHHHHHhcCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 007519 356 CVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMV---SRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPN 432 (600)
Q Consensus 356 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~ 432 (600)
........ .+...+..+...+...|++++|...+++.. +.+...|..+...+...|++++|+..+++....+ +.+
T Consensus 159 ~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~ 236 (388)
T d1w3ba_ 159 LKAIETQP-NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNH 236 (388)
T ss_dssp HHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTC
T ss_pred HHhhccCc-chhHHHHhhcccccccCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhH
Confidence 66655443 245677788889999999999999998775 5567789999999999999999999999998864 455
Q ss_pred hhHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhCC--CCCCHHHHHHHHH
Q 007519 433 SVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQP-GPEHYVSMINLLGRAGKIKEAEEFVLRLP--FEPDHRIWGALLG 509 (600)
Q Consensus 433 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~ 509 (600)
...+..+...+...|++++|...|+++.+. .| ++.++..++.++...|++++|.+.++... .+.+...+..+..
T Consensus 237 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 313 (388)
T d1w3ba_ 237 AVVHGNLACVYYEQGLIDLAIDTYRRAIEL---QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLAN 313 (388)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHH
Confidence 667777888999999999999999999864 56 47789999999999999999999998864 4456677778888
Q ss_pred HHhhhhCCHHHHHHHHHHHHhhCCCCCCcHHHHhHHHHhhCCcHHHHHHHHHHhh
Q 007519 510 ACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGL 564 (600)
Q Consensus 510 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 564 (600)
.+. ..|++++|+..+++++++.|+++.++..++.+|...|++++|.+.++...+
T Consensus 314 ~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 367 (388)
T d1w3ba_ 314 IKR-EQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp HHH-TTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred HHH-HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 888 999999999999999999999999999999999999999999997766544
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.59 E-value=7.8e-14 Score=130.72 Aligned_cols=236 Identities=16% Similarity=0.097 Sum_probs=125.5
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHCCCCCC-hhHHHHHHHHHhcccchhhhHHHHHHHhhhcCCCchhHHHHHHHHHHhc
Q 007519 302 AMISGLVQNELFVEATYLFMEMRAHGVPPL-NATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKC 380 (600)
Q Consensus 302 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 380 (600)
.....+.+.|++++|+..|+++.+. .|+ ...+..+..++...|+++.|...+..+.+.... +...+..+...|...
T Consensus 24 ~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~ 100 (323)
T d1fcha_ 24 EEGLRRLQEGDLPNAVLLFEAAVQQ--DPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPD-NQTALMALAVSFTNE 100 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccc-ccccccccccccccc
Confidence 4455677888888888888888775 343 445666666666667777776666666554332 345555666666666
Q ss_pred CChHHHHHHHhcCC--CCCh-hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccCchHHHHHHHH
Q 007519 381 GVIDNAYNIFSNMV--SRDL-VSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFN 457 (600)
Q Consensus 381 ~~~~~A~~~~~~~~--~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 457 (600)
|++++|.+.++... .|+. ..+........ ..+.......+..+...+.+.+|.+.+.
T Consensus 101 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 160 (323)
T d1fcha_ 101 SLQRQACEILRDWLRYTPAYAHLVTPAEEGAG--------------------GAGLGPSKRILGSLLSDSLFLEVKELFL 160 (323)
T ss_dssp TCHHHHHHHHHHHHHTSTTTGGGCC-----------------------------------CTTHHHHHHHHHHHHHHHHH
T ss_pred ccccccccchhhHHHhccchHHHHHhhhhhhh--------------------hcccccchhhHHHHHHhhHHHHHHHHHH
Confidence 77776666666543 1111 00000000000 0000000001111223344555555555
Q ss_pred HHHhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCC
Q 007519 458 AMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLP-FEP-DHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLN 535 (600)
Q Consensus 458 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~ 535 (600)
++.+...-.+++.++..++..+...|++++|...+++.. ..| +...|..+...+. ..|++++|+..++++++++|++
T Consensus 161 ~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~p~~ 239 (323)
T d1fcha_ 161 AAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLA-NGNQSEEAVAAYRRALELQPGY 239 (323)
T ss_dssp HHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccccccccchhhhhhccc-ccccchhHHHHHHHHHHHhhcc
Confidence 555432222234455556666666666666666665542 233 3444555555555 6666666666666666666666
Q ss_pred CCcHHHHhHHHHhhCCcHHHHHHHHH
Q 007519 536 APAHVVLCNIYAASGRHVEEHKLRMD 561 (600)
Q Consensus 536 ~~~~~~l~~~~~~~g~~~~A~~~~~~ 561 (600)
+.++..++.+|.+.|++++|++.++.
T Consensus 240 ~~a~~~lg~~~~~~g~~~~A~~~~~~ 265 (323)
T d1fcha_ 240 IRSRYNLGISCINLGAHREAVEHFLE 265 (323)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 66666666666666666666664443
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.53 E-value=2.3e-13 Score=127.41 Aligned_cols=264 Identities=14% Similarity=0.046 Sum_probs=166.2
Q ss_pred HHHHHHhcCChHHHHHHHhhCCC---CChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhcccch
Q 007519 272 MIDGYLSVGQVSNAYYLFHNMPD---RDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANI 348 (600)
Q Consensus 272 l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~ 348 (600)
....+.+.|++++|+..|+++.+ .+..+|..+..++...|++++|+..|++..+.. +-+...+..+..++...|++
T Consensus 25 ~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~ 103 (323)
T d1fcha_ 25 EGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESLQ 103 (323)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-cccccccccccccccccccc
Confidence 34445555666666666655433 234566666666666777777777776666542 22344555555666667777
Q ss_pred hhhHHHHHHHhhhcCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 007519 349 DLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESG 428 (600)
Q Consensus 349 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 428 (600)
+.|...+..+........ ........... ..+.......+..+...+...+|.+.+.+.....
T Consensus 104 ~~A~~~~~~~~~~~~~~~-~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~ 166 (323)
T d1fcha_ 104 RQACEILRDWLRYTPAYA-HLVTPAEEGAG----------------GAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLD 166 (323)
T ss_dssp HHHHHHHHHHHHTSTTTG-GGCC-------------------------------CTTHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred cccccchhhHHHhccchH-HHHHhhhhhhh----------------hcccccchhhHHHHHHhhHHHHHHHHHHHHHHHh
Confidence 777766666554332211 00000000000 0001111112223344556778888888877642
Q ss_pred C-CCChhHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHH
Q 007519 429 T-HPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQP-GPEHYVSMINLLGRAGKIKEAEEFVLRLP-FEP-DHRIW 504 (600)
Q Consensus 429 ~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~ 504 (600)
. .++...+..+...+...|++++|...++++... .| +...|..++.+|.+.|++++|.+.+++.. ..| +..++
T Consensus 167 p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 243 (323)
T d1fcha_ 167 PTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV---RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSR 243 (323)
T ss_dssp TTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred hcccccccchhhHHHHHHHHHHhhhhccccccccc---ccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHH
Confidence 1 234556777788889999999999999998864 56 47789999999999999999999998864 455 46678
Q ss_pred HHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCCcH-----------HHHhHHHHhhCCcHHHHH
Q 007519 505 GALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAH-----------VVLCNIYAASGRHVEEHK 557 (600)
Q Consensus 505 ~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~-----------~~l~~~~~~~g~~~~A~~ 557 (600)
..+..++. ..|++++|+..|+++++++|++...+ ..+..++...|+.+.+..
T Consensus 244 ~~lg~~~~-~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~~ 306 (323)
T d1fcha_ 244 YNLGISCI-NLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGA 306 (323)
T ss_dssp HHHHHHHH-HHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHH
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 88888888 99999999999999999988766543 445666766777665543
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.16 E-value=3.3e-09 Score=99.92 Aligned_cols=157 Identities=13% Similarity=0.045 Sum_probs=68.6
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCC----ChhHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCCC-----cchHH
Q 007519 403 SMVMGFSHHGLANETLKVFESMLESGTHP----NSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPG-----PEHYV 473 (600)
Q Consensus 403 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~p----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~ 473 (600)
.+...+...|+++.+...+.......... ....+......+...++...+...+.+.........+ ...+.
T Consensus 138 ~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~ 217 (366)
T d1hz4a_ 138 IRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANK 217 (366)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHH
T ss_pred HHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHH
Confidence 34444555555555555555544431111 1122222333344445555555444444332111111 22233
Q ss_pred HHHHHHhhcCChHHHHHHHHhCC-CCC-----CHHHHHHHHHHHhhhhCCHHHHHHHHHHHHh------hCCCCCCcHHH
Q 007519 474 SMINLLGRAGKIKEAEEFVLRLP-FEP-----DHRIWGALLGACGFCEGNAEIAEHAAKRLLE------LDPLNAPAHVV 541 (600)
Q Consensus 474 ~l~~~~~~~g~~~~A~~~~~~~~-~~p-----~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~------~~p~~~~~~~~ 541 (600)
.++..+...|++++|...+++.. ..| ....+..+...+. ..|++++|...+++++. ..|....++..
T Consensus 218 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 296 (366)
T d1hz4a_ 218 VRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQI-LLGEFEPAEIVLEELNENARSLRLMSDLNRNLLL 296 (366)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHH
Confidence 44445555555555555555432 111 1122333344444 55555555555555543 12223344555
Q ss_pred HhHHHHhhCCcHHHHHHHH
Q 007519 542 LCNIYAASGRHVEEHKLRM 560 (600)
Q Consensus 542 l~~~~~~~g~~~~A~~~~~ 560 (600)
++.+|.+.|++++|.+.++
T Consensus 297 la~~~~~~g~~~~A~~~l~ 315 (366)
T d1hz4a_ 297 LNQLYWQAGRKSDAQRVLL 315 (366)
T ss_dssp HHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHH
Confidence 5555555555555555443
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.11 E-value=1e-09 Score=100.99 Aligned_cols=219 Identities=8% Similarity=0.146 Sum_probs=123.1
Q ss_pred HHHHHHHHhcccchhhhHHHHHHHhhhcCCCchhHHHHHHHHHHhcC-ChHHHHHHHhcCC---CCChhhHHHHHHHHHh
Q 007519 335 FSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCG-VIDNAYNIFSNMV---SRDLVSWNSMVMGFSH 410 (600)
Q Consensus 335 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~ 410 (600)
+..+-..+.+.+..++|...++.+.+..+. +...|+....++...| ++++|+..++... +.+..+|..+...+..
T Consensus 46 ~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~-~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~~ 124 (315)
T d2h6fa1 46 YDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEW 124 (315)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCchHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHh
Confidence 334444555566667777777766665433 3445555555555544 3667766666654 4456666666666666
Q ss_pred cCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCC-CcchHHHHHHHHhhcCC-----
Q 007519 411 HGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQP-GPEHYVSMINLLGRAGK----- 484 (600)
Q Consensus 411 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~----- 484 (600)
.|++++|++.++++.+.. +.+...|..+...+...|++++|++.++++.+. .| +...|+.++.++.+.|.
T Consensus 125 l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~---~p~n~~a~~~r~~~l~~~~~~~~~~ 200 (315)
T d2h6fa1 125 LRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE---DVRNNSVWNQRYFVISNTTGYNDRA 200 (315)
T ss_dssp HTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCSCSHH
T ss_pred hccHHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHH---CCccHHHHHHHHHHHHHccccchhh
Confidence 777777777777666642 334556666666666667777777777766653 45 35556666555554443
Q ss_pred -hHHHHHHHHhCC-CCC-CHHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCC--cHHHHhHHHHhh--CCcHHHHH
Q 007519 485 -IKEAEEFVLRLP-FEP-DHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAP--AHVVLCNIYAAS--GRHVEEHK 557 (600)
Q Consensus 485 -~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~--~~~~l~~~~~~~--g~~~~A~~ 557 (600)
+++|.+.+.+.. ..| +...|..+...+. ....+++...++++.++.|+... .+..++.+|... +..+.+..
T Consensus 201 ~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~ 278 (315)
T d2h6fa1 201 VLEREVQYTLEMIKLVPHNESAWNYLKGILQ--DRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKED 278 (315)
T ss_dssp HHHHHHHHHHHHHHHSTTCHHHHHHHHHHHT--TTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHHH
T ss_pred hhHHhHHHHHHHHHhCCCchHHHHHHHHHHH--hcChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 455665555532 334 3445555544433 33345666666666666664332 233444544332 45555555
Q ss_pred HHH
Q 007519 558 LRM 560 (600)
Q Consensus 558 ~~~ 560 (600)
.++
T Consensus 279 ~~~ 281 (315)
T d2h6fa1 279 ILN 281 (315)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.07 E-value=8.2e-09 Score=97.09 Aligned_cols=188 Identities=11% Similarity=-0.056 Sum_probs=120.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhcCC--------CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcC--CCCCh----h
Q 007519 369 LENCLISMYAKCGVIDNAYNIFSNMV--------SRDLVSWNSMVMGFSHHGLANETLKVFESMLESG--THPNS----V 434 (600)
Q Consensus 369 ~~~~l~~~~~~~~~~~~A~~~~~~~~--------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~--~~p~~----~ 434 (600)
.+..+...+...|+++.+...+.... ......+......+...++..++...+.+..... ..... .
T Consensus 135 ~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~ 214 (366)
T d1hz4a_ 135 LVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISN 214 (366)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHH
T ss_pred HHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHH
Confidence 33445566677777777777766553 1122344555666777888888888777665431 11111 2
Q ss_pred HHHHHHHHhcccCchHHHHHHHHHHHhhcCCCC--CcchHHHHHHHHhhcCChHHHHHHHHhCC-------CCCCH-HHH
Q 007519 435 TFLGILSACSHAGLVSRGWELFNAMFDVYKIQP--GPEHYVSMINLLGRAGKIKEAEEFVLRLP-------FEPDH-RIW 504 (600)
Q Consensus 435 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~p~~-~~~ 504 (600)
.+......+...|+++.|...+++........+ ....+..++.++...|++++|.+.+++.. ..|+. ..+
T Consensus 215 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 294 (366)
T d1hz4a_ 215 ANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNL 294 (366)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHH
Confidence 344455667788999999999888765321111 13345567888999999999999887752 33433 345
Q ss_pred HHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCC---------CcHHHHhHHHHhhCCcHHHHH
Q 007519 505 GALLGACGFCEGNAEIAEHAAKRLLELDPLNA---------PAHVVLCNIYAASGRHVEEHK 557 (600)
Q Consensus 505 ~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~---------~~~~~l~~~~~~~g~~~~A~~ 557 (600)
..+...+. ..|++++|+..+++++++.+... ..+..+...+...++.+++.+
T Consensus 295 ~~la~~~~-~~g~~~~A~~~l~~Al~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~e~e~ 355 (366)
T d1hz4a_ 295 LLLNQLYW-QAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQ 355 (366)
T ss_dssp HHHHHHHH-HHTCHHHHHHHHHHHHHHHHHHCCCHHHHTTHHHHHHHHHHHHHTTCSCHHHH
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHHHHHhcCCChHHHH
Confidence 55666677 99999999999999988654222 223345555667788777765
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.05 E-value=4.3e-09 Score=96.76 Aligned_cols=226 Identities=10% Similarity=0.103 Sum_probs=165.1
Q ss_pred hhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChh-HHHHHHHHHhccc-chhhhHHHHHHHhhhcCCCchhHHHHHHH
Q 007519 298 VAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNA-TFSVLFGAAGATA-NIDLGRQIHCVLMKTESESDLILENCLIS 375 (600)
Q Consensus 298 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 375 (600)
.+++.+...+.+.+.+++|+.+++++++. .|+.. .|.....++...+ ++++|...++.+.+...+ +..+|..+..
T Consensus 44 ~a~~~~~~~~~~~e~~~~Al~~~~~ai~l--nP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~-~~~a~~~~~~ 120 (315)
T d2h6fa1 44 DVYDYFRAVLQRDERSERAFKLTRDAIEL--NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRV 120 (315)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHh-hhhHHHHHhH
Confidence 35666777788899999999999999986 56655 5566666777766 589999999988887655 6778888899
Q ss_pred HHHhcCChHHHHHHHhcCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhc------cc
Q 007519 376 MYAKCGVIDNAYNIFSNMV---SRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACS------HA 446 (600)
Q Consensus 376 ~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~------~~ 446 (600)
.+.+.|++++|+..++++. +.+...|..+...+...|++++|++.++++.+.. +-+...|+.+...+. ..
T Consensus 121 ~~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~-p~n~~a~~~r~~~l~~~~~~~~~ 199 (315)
T d2h6fa1 121 LVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDR 199 (315)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSH
T ss_pred HHHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHC-CccHHHHHHHHHHHHHccccchh
Confidence 9999999999999999987 5678899999999999999999999999999863 334556665554443 33
Q ss_pred CchHHHHHHHHHHHhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhCC----CCCCHHHHHHHHHHHh-hhhCCHHH
Q 007519 447 GLVSRGWELFNAMFDVYKIQP-GPEHYVSMINLLGRAGKIKEAEEFVLRLP----FEPDHRIWGALLGACG-FCEGNAEI 520 (600)
Q Consensus 447 g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~~~~~~~l~~~~~-~~~g~~~~ 520 (600)
+.+++|.+.+.++.+. .| +...|..+...+...| .+++.+.++... ...+...+..+...+. ...++.+.
T Consensus 200 ~~~~~ai~~~~~al~~---~P~~~~~~~~l~~ll~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~~~~~~~~~ 275 (315)
T d2h6fa1 200 AVLEREVQYTLEMIKL---VPHNESAWNYLKGILQDRG-LSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDN 275 (315)
T ss_dssp HHHHHHHHHHHHHHHH---STTCHHHHHHHHHHHTTTC-GGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSS
T ss_pred hhhHHhHHHHHHHHHh---CCCchHHHHHHHHHHHhcC-hHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHhcCHHH
Confidence 4578899999988864 56 5777888877766554 466666665542 2234445555555443 02244455
Q ss_pred HHHHHHHHHhh
Q 007519 521 AEHAAKRLLEL 531 (600)
Q Consensus 521 a~~~~~~~~~~ 531 (600)
+...++++.++
T Consensus 276 ~~~~~~ka~~l 286 (315)
T d2h6fa1 276 KEDILNKALEL 286 (315)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 56666665543
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.05 E-value=2e-09 Score=96.39 Aligned_cols=198 Identities=10% Similarity=-0.069 Sum_probs=116.2
Q ss_pred HHHHHHHHhcccchhhhHHHHHHHhhhcCCCchhHHHHHHHHHHhcCChHHHHHHHhcCC---CCChhhHHHHHHHHHhc
Q 007519 335 FSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMV---SRDLVSWNSMVMGFSHH 411 (600)
Q Consensus 335 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~ 411 (600)
+..+..++.+.|+++.|...|+...+.... ++.++..+..+|.+.|++++|...|+++. +.+..++..+..++...
T Consensus 40 ~~~~G~~y~~~g~~~~A~~~~~~al~l~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 118 (259)
T d1xnfa_ 40 LYERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYG 118 (259)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHhhccCCC-CHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHHH
Confidence 333344555555555555555555544322 45667777888888888888888888776 44566788888888888
Q ss_pred CChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCCCcchHHHHHHHHhhcCCh----HH
Q 007519 412 GLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKI----KE 487 (600)
Q Consensus 412 ~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~----~~ 487 (600)
|++++|...|++..+.. +.+......+..++.+.+..+.+..+....... .+....+. ++..+...... +.
T Consensus 119 g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~~~~~~~~~~~~ 193 (259)
T d1xnfa_ 119 GRDKLAQDDLLAFYQDD-PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS---DKEQWGWN-IVEFYLGNISEQTLMER 193 (259)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS---CCCSTHHH-HHHHHTTSSCHHHHHHH
T ss_pred hhHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHHhhhHHHHHHHHHHhhcc---chhhhhhh-HHHHHHHHHHHHHHHHH
Confidence 99999999998888753 233333333334444555555555544444332 22222222 22333222222 22
Q ss_pred HHHHHHhCC-CCCC-HHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCCcH
Q 007519 488 AEEFVLRLP-FEPD-HRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAH 539 (600)
Q Consensus 488 A~~~~~~~~-~~p~-~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 539 (600)
+...+.... ..|+ ..++..+...+. ..|++++|+..|+++++.+|++...|
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~ 246 (259)
T d1xnfa_ 194 LKADATDNTSLAEHLSETNFYLGKYYL-SLGDLDSATALFKLAVANNVHNFVEH 246 (259)
T ss_dssp HHHHCCSHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCCTTCHHH
T ss_pred HHHHHHHhhhcCcccHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHcCCCCHHHH
Confidence 222221111 2232 235566667777 89999999999999999999664444
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.05 E-value=5.2e-10 Score=104.56 Aligned_cols=229 Identities=7% Similarity=-0.106 Sum_probs=160.7
Q ss_pred CCChhHHHHHHHHHHHCCCCCC-hhHHHHHHHHHhccc--chhhhHHHHHHHhhhcCCCchhHHHHHHHHHHhcCChHHH
Q 007519 310 NELFVEATYLFMEMRAHGVPPL-NATFSVLFGAAGATA--NIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNA 386 (600)
Q Consensus 310 ~g~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 386 (600)
.|++++|+..++...+. .|+ ...+..+..++...+ +.+.+...+..+.+.........+......+...+.+++|
T Consensus 86 ~~~~~~al~~~~~~l~~--~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A 163 (334)
T d1dcea1 86 AALVKAELGFLESCLRV--NPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEE 163 (334)
T ss_dssp HHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHH
T ss_pred HHHHHHHHHHHHHHHHh--CCCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHH
Confidence 34567777788777765 343 334444444444443 4677777777777765443333334455677788999999
Q ss_pred HHHHhcCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccCchHHHHHHHHHHHhhc
Q 007519 387 YNIFSNMV---SRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVY 463 (600)
Q Consensus 387 ~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 463 (600)
+..++.+. +.+...|+.+..++...|++++|...++..... .|+.. .+...+...+..+++...+......
T Consensus 164 l~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~---~~~~~~~~l~~~~~a~~~~~~~l~~- 237 (334)
T d1dcea1 164 LAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENV--LLKEL---ELVQNAFFTDPNDQSAWFYHRWLLG- 237 (334)
T ss_dssp HHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHH--HHHHH---HHHHHHHHHCSSCSHHHHHHHHHHS-
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHh--HHHHH---HHHHHHHHhcchhHHHHHHHHHHHh-
Confidence 99999887 456778888899999999988876666554432 22221 2223344556677788878777653
Q ss_pred CCCCCcchHHHHHHHHhhcCChHHHHHHHHhCC-CCCCH-HHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCCcHHH
Q 007519 464 KIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLP-FEPDH-RIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVV 541 (600)
Q Consensus 464 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~-~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 541 (600)
-.++...+..++..+...|+.++|.+.+.+.. ..|+. ..+..+...+. ..|+.++|+..++++++++|+++..|..
T Consensus 238 -~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~-~~~~~~eA~~~~~~ai~ldP~~~~y~~~ 315 (334)
T d1dcea1 238 -RAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALD-PLLYEKETLQYFSTLKAVDPMRAAYLDD 315 (334)
T ss_dssp -CCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC-TGGGHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred -CcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCchHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHCcccHHHHHH
Confidence 23356677788889999999999999988764 66644 45666777777 9999999999999999999988888888
Q ss_pred HhHHHHh
Q 007519 542 LCNIYAA 548 (600)
Q Consensus 542 l~~~~~~ 548 (600)
|...+.-
T Consensus 316 L~~~~~~ 322 (334)
T d1dcea1 316 LRSKFLL 322 (334)
T ss_dssp HHHHHHH
T ss_pred HHHHHhH
Confidence 8777653
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.01 E-value=1.8e-08 Score=92.37 Aligned_cols=186 Identities=12% Similarity=0.091 Sum_probs=135.8
Q ss_pred chhhhHHHHHHHhhhcCCCchhHHHHHHHHHHhcCChHHHHHHHhcCC---CCC-hhhHHHHHHHHHhcCChHHHHHHHH
Q 007519 347 NIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMV---SRD-LVSWNSMVMGFSHHGLANETLKVFE 422 (600)
Q Consensus 347 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~-~~~~~~l~~~~~~~~~~~~a~~~~~ 422 (600)
..+.+..+++...+...+.+...+..++..+.+.|+++.|..+|+++. +.+ ...|...+..+.+.|+.+.|.++|+
T Consensus 79 ~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~ 158 (308)
T d2onda1 79 FSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFK 158 (308)
T ss_dssp HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 456777888877765555566677788888888899999999888765 223 3468888888888889999999999
Q ss_pred HHHHcCCCCChhHHHHHHHH-hcccCchHHHHHHHHHHHhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhCC----
Q 007519 423 SMLESGTHPNSVTFLGILSA-CSHAGLVSRGWELFNAMFDVYKIQP-GPEHYVSMINLLGRAGKIKEAEEFVLRLP---- 496 (600)
Q Consensus 423 ~m~~~~~~p~~~~~~~l~~~-~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---- 496 (600)
++.+.+ +.+...|...... +...|+.+.|..+|+.+.+. .| +...|..++..+.+.|+++.|..+|++..
T Consensus 159 ~al~~~-~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~---~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~ 234 (308)
T d2onda1 159 KAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK---YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGS 234 (308)
T ss_dssp HHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH---HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSS
T ss_pred HHHHhC-CCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh---hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Confidence 887653 3333444333322 33457888899999988875 34 56788888888889999999998888752
Q ss_pred CCCC--HHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCC
Q 007519 497 FEPD--HRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAP 537 (600)
Q Consensus 497 ~~p~--~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 537 (600)
..|+ ...|...+..-. ..|+.+.+..+++++.+..|....
T Consensus 235 ~~~~~~~~iw~~~~~fE~-~~G~~~~~~~~~~r~~~~~~~~~~ 276 (308)
T d2onda1 235 LPPEKSGEIWARFLAFES-NIGDLASILKVEKRRFTAFREEYE 276 (308)
T ss_dssp SCGGGCHHHHHHHHHHHH-HHSCHHHHHHHHHHHHHHTTTTTS
T ss_pred CChHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCccccc
Confidence 3332 346776666656 789999999999988888885543
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.99 E-value=1.5e-09 Score=97.28 Aligned_cols=194 Identities=14% Similarity=0.049 Sum_probs=139.2
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhcCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHh
Q 007519 367 LILENCLISMYAKCGVIDNAYNIFSNMV---SRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSAC 443 (600)
Q Consensus 367 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 443 (600)
..++..+..+|.+.|++++|...|++.. +.++.+|..+..++...|++++|+..|+++.+.. +-+..++..+..++
T Consensus 37 a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~ 115 (259)
T d1xnfa_ 37 AQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIAL 115 (259)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHH-hhhhhhHHHHHHHH
Confidence 3456677889999999999999999886 5678899999999999999999999999999853 33456788888999
Q ss_pred cccCchHHHHHHHHHHHhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhCC-CCCCHHHHHHHHHHHh---hhhCCH
Q 007519 444 SHAGLVSRGWELFNAMFDVYKIQP-GPEHYVSMINLLGRAGKIKEAEEFVLRLP-FEPDHRIWGALLGACG---FCEGNA 518 (600)
Q Consensus 444 ~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~~~~~---~~~g~~ 518 (600)
...|++++|...+++..+. .| +......+...+.+.+..+.+..+..... ..+....+.. +..+. ...+..
T Consensus 116 ~~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 191 (259)
T d1xnfa_ 116 YYGGRDKLAQDDLLAFYQD---DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNI-VEFYLGNISEQTLM 191 (259)
T ss_dssp HHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTHHHH-HHHHTTSSCHHHHH
T ss_pred HHHhhHHHHHHHHHHHHhh---ccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccchhhhhhhH-HHHHHHHHHHHHHH
Confidence 9999999999999999875 45 34444445555556665555544443332 1222222221 11111 023345
Q ss_pred HHHHHHHHHHHhhCCCCCCcHHHHhHHHHhhCCcHHHHHHHHHHhhc
Q 007519 519 EIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLK 565 (600)
Q Consensus 519 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 565 (600)
+.+...+.......|....++..++.+|...|++++|.+.++.....
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 238 (259)
T d1xnfa_ 192 ERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN 238 (259)
T ss_dssp HHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 55555555656677766778899999999999999999987765543
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.91 E-value=8.1e-08 Score=87.94 Aligned_cols=166 Identities=15% Similarity=0.065 Sum_probs=81.2
Q ss_pred ChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhcccchhhhHHHHHHHhhhcCCCchhHHHHHHH
Q 007519 296 DAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLIS 375 (600)
Q Consensus 296 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 375 (600)
+...|...+..+...|+++.|..+|+++.+.........+...+..+.+.++.+.|+.++..+.+..... ...+.....
T Consensus 98 ~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~~-~~~~~~~a~ 176 (308)
T d2onda1 98 NMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTR-HHVYVTAAL 176 (308)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCC-THHHHHHHH
T ss_pred CHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCc-HHHHHHHHH
Confidence 3345555555566666666666666666553211222345555555555566666666666555443322 222222221
Q ss_pred -HHHhcCChHHHHHHHhcCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCC--hhHHHHHHHHhcccCc
Q 007519 376 -MYAKCGVIDNAYNIFSNMV---SRDLVSWNSMVMGFSHHGLANETLKVFESMLESG-THPN--SVTFLGILSACSHAGL 448 (600)
Q Consensus 376 -~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~~p~--~~~~~~l~~~~~~~g~ 448 (600)
.+...|+.+.|..+|+.+. +.+...|...+..+...|+.+.|..+|++..... ..|+ ...|...+..-...|+
T Consensus 177 ~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~ 256 (308)
T d2onda1 177 MEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGD 256 (308)
T ss_dssp HHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSC
T ss_pred HHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCC
Confidence 1223355555555555554 3344555555555555555555555555554432 2222 1234444444444455
Q ss_pred hHHHHHHHHHHHhh
Q 007519 449 VSRGWELFNAMFDV 462 (600)
Q Consensus 449 ~~~a~~~~~~~~~~ 462 (600)
.+.+..+++++.+.
T Consensus 257 ~~~~~~~~~r~~~~ 270 (308)
T d2onda1 257 LASILKVEKRRFTA 270 (308)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 55555555555443
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.72 E-value=2.2e-08 Score=93.17 Aligned_cols=226 Identities=8% Similarity=-0.076 Sum_probs=138.0
Q ss_pred CChHHHHHHHhhCCC---CChhhHHHHHHHHHhCC--ChhHHHHHHHHHHHCCCCCChhHHH-HHHHHHhcccchhhhHH
Q 007519 280 GQVSNAYYLFHNMPD---RDAVAWTAMISGLVQNE--LFVEATYLFMEMRAHGVPPLNATFS-VLFGAAGATANIDLGRQ 353 (600)
Q Consensus 280 ~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g--~~~~a~~~~~~m~~~g~~p~~~~~~-~l~~~~~~~~~~~~a~~ 353 (600)
|++++|+.+++.... .+...|..+..++...+ ++++|+..++++.+.. +++...+. .....+...+..+.|..
T Consensus 87 ~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~Al~ 165 (334)
T d1dcea1 87 ALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELA 165 (334)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccHHHHH
Confidence 334445555544432 23444555544444433 3566777776666642 22233333 23344555666677777
Q ss_pred HHHHHhhhcCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh
Q 007519 354 IHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNS 433 (600)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 433 (600)
.++.+.+.... +...++.+..++...|++++|...+.....-..... .....+...+..+++...+....... +++.
T Consensus 166 ~~~~~i~~~p~-~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~a~~~~~~~l~~~-~~~~ 242 (334)
T d1dcea1 166 FTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKEL-ELVQNAFFTDPNDQSAWFYHRWLLGR-AEPL 242 (334)
T ss_dssp HHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHH-HHHHHHHHHCSSCSHHHHHHHHHHSC-CCCS
T ss_pred HHHHHHHcCCC-CHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhHHHHH-HHHHHHHHhcchhHHHHHHHHHHHhC-cchh
Confidence 66666655443 556666777777788887777665555442222211 12333455667777888888777653 4444
Q ss_pred hHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhCC-CCCCH-HHHHHHHHH
Q 007519 434 VTFLGILSACSHAGLVSRGWELFNAMFDVYKIQP-GPEHYVSMINLLGRAGKIKEAEEFVLRLP-FEPDH-RIWGALLGA 510 (600)
Q Consensus 434 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~-~~~~~l~~~ 510 (600)
..+..+...+...|+.++|...+.+... ..| +...+..++.+|.+.|++++|.+.++++. ..|+. ..|..+...
T Consensus 243 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~L~~~ 319 (334)
T d1dcea1 243 FRCELSVEKSTVLQSELESCKELQELEP---ENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSK 319 (334)
T ss_dssp SSCCCCHHHHHHHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHh---hCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHHHHHHHH
Confidence 5555566667778889999988887764 356 57788889999999999999999998875 66754 455555544
Q ss_pred Hh
Q 007519 511 CG 512 (600)
Q Consensus 511 ~~ 512 (600)
+.
T Consensus 320 ~~ 321 (334)
T d1dcea1 320 FL 321 (334)
T ss_dssp HH
T ss_pred Hh
Confidence 44
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.71 E-value=6e-08 Score=73.94 Aligned_cols=103 Identities=13% Similarity=0.043 Sum_probs=75.2
Q ss_pred HHHhcccCchHHHHHHHHHHHhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHhhhhC
Q 007519 440 LSACSHAGLVSRGWELFNAMFDVYKIQP-GPEHYVSMINLLGRAGKIKEAEEFVLRLP--FEPDHRIWGALLGACGFCEG 516 (600)
Q Consensus 440 ~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~g 516 (600)
...+...|++++|+.+|+++.+. .| ++..|..++.+|...|++++|+..+++.. .+.+...|..+..++. ..|
T Consensus 10 g~~~~~~g~~~eAi~~~~~al~~---~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~-~~~ 85 (117)
T d1elwa_ 10 GNKALSVGNIDDALQCYSEAIKL---DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE-FLN 85 (117)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHhc---CCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHH-Hcc
Confidence 34556778888888888887754 55 56677788888888888888888877764 3335666777777777 888
Q ss_pred CHHHHHHHHHHHHhhCCCCCCcHHHHhHHH
Q 007519 517 NAEIAEHAAKRLLELDPLNAPAHVVLCNIY 546 (600)
Q Consensus 517 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 546 (600)
++++|+..++++++++|+++.++..+..+-
T Consensus 86 ~~~~A~~~~~~a~~~~p~~~~~~~~l~~l~ 115 (117)
T d1elwa_ 86 RFEEAKRTYEEGLKHEANNPQLKEGLQNME 115 (117)
T ss_dssp CHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHh
Confidence 888888888888888887777776665543
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.61 E-value=7e-08 Score=82.16 Aligned_cols=119 Identities=8% Similarity=-0.139 Sum_probs=95.9
Q ss_pred CChhHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhCC-CCCC-HHHHHHH
Q 007519 431 PNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQP-GPEHYVSMINLLGRAGKIKEAEEFVLRLP-FEPD-HRIWGAL 507 (600)
Q Consensus 431 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l 507 (600)
|+...+......+...|++++|+..|+++++. .| ++..|..++.+|.+.|++++|+..+++.. ..|+ ...|..+
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~---~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~l 78 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR---NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFL 78 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHH
Confidence 66777777888889999999999999998865 56 57788899999999999999999998865 6664 5678888
Q ss_pred HHHHhhhhCCHHHHHHHHHHHHhhCCCCCCcHHHHhHHHHhhCCcH
Q 007519 508 LGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHV 553 (600)
Q Consensus 508 ~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 553 (600)
..++. ..|++++|+..+++++++.|++...+...+..+...+...
T Consensus 79 g~~~~-~l~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~ 123 (201)
T d2c2la1 79 GQCQL-EMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKK 123 (201)
T ss_dssp HHHHH-HTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHHHHHH
T ss_pred HHHHH-HCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHh
Confidence 88888 9999999999999999988877766666666655544433
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.61 E-value=7.2e-07 Score=74.66 Aligned_cols=139 Identities=9% Similarity=-0.054 Sum_probs=96.8
Q ss_pred HHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccCchHHHH
Q 007519 374 ISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGW 453 (600)
Q Consensus 374 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~ 453 (600)
...+...|++++|++.|.++.+++..+|..+..+|...|++++|++.|++..+.. +.+...|..+..++.+.|++++|.
T Consensus 12 g~~~~~~~d~~~Al~~~~~i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~~~g~~~~A~ 90 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYDLAI 90 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHHhhccHHHHH
Confidence 3456677888888888888888888888888888888888888888888888753 344567777778888888888888
Q ss_pred HHHHHHHhhcCCCCCcc-hHHHHHHHHhhcCChHHHHHHHHhCCCCCC-HHHHHHHHHHHhhhhCCHHHHHHHHHHHHhh
Q 007519 454 ELFNAMFDVYKIQPGPE-HYVSMINLLGRAGKIKEAEEFVLRLPFEPD-HRIWGALLGACGFCEGNAEIAEHAAKRLLEL 531 (600)
Q Consensus 454 ~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~-~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~ 531 (600)
+.|+++... ..++.. .+..+.. ...++ ..++..+..++. ..|++++|++.+++++++
T Consensus 91 ~~~~kAl~~--~~~n~~~~~~~~~~------------------~~~~~~~e~~~n~a~~~~-~~~~~~~A~~~l~~A~~~ 149 (192)
T d1hh8a_ 91 KDLKEALIQ--LRGNQLIDYKILGL------------------QFKLFACEVLYNIAFMYA-KKEEWKKAEEQLALATSM 149 (192)
T ss_dssp HHHHHHHHT--TTTCSEEECGGGTB------------------CCEEEHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHh--CccCchHHHHHhhh------------------hcccchHHHHHHHHHHHH-HCCCHHHHHHHHHHHHhc
Confidence 888887653 112211 1111000 00111 234455666667 889999999999999988
Q ss_pred CCC
Q 007519 532 DPL 534 (600)
Q Consensus 532 ~p~ 534 (600)
.|+
T Consensus 150 ~~~ 152 (192)
T d1hh8a_ 150 KSE 152 (192)
T ss_dssp CCS
T ss_pred CCC
Confidence 884
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.56 E-value=1.5e-07 Score=79.99 Aligned_cols=96 Identities=5% Similarity=-0.108 Sum_probs=82.1
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCC-CcchHHH
Q 007519 396 RDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQP-GPEHYVS 474 (600)
Q Consensus 396 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~ 474 (600)
|+...+......+.+.|++++|+..|++..... +.+...|..+..+|.+.|++++|+..|+++.+ +.| +...|..
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~---l~p~~~~a~~~ 77 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALE---LDGQSVKAHFF 77 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---SCTTCHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHH---hCCCcHHHHHH
Confidence 566667778889999999999999999988863 45667788888999999999999999999874 577 4778999
Q ss_pred HHHHHhhcCChHHHHHHHHhC
Q 007519 475 MINLLGRAGKIKEAEEFVLRL 495 (600)
Q Consensus 475 l~~~~~~~g~~~~A~~~~~~~ 495 (600)
++.+|.+.|++++|...|+++
T Consensus 78 lg~~~~~l~~~~~A~~~~~~a 98 (201)
T d2c2la1 78 LGQCQLEMESYDEAIANLQRA 98 (201)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHH
Confidence 999999999999999999875
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.56 E-value=2.2e-07 Score=70.68 Aligned_cols=91 Identities=14% Similarity=0.082 Sum_probs=80.0
Q ss_pred HHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCCcHHHHhHHHHhhCC
Q 007519 474 SMINLLGRAGKIKEAEEFVLRLP-FEP-DHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGR 551 (600)
Q Consensus 474 ~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 551 (600)
.-+..+.+.|++++|...|++.. ..| +...|..+..++. ..|++++|+..++++++++|+++..|..++.++...|+
T Consensus 8 ~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~ 86 (117)
T d1elwa_ 8 EKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYA-KKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNR 86 (117)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhccccccc-ccccccccchhhhhHHHhccchhhHHHHHHHHHHHccC
Confidence 35777899999999999999974 445 5667888888888 99999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHhhc
Q 007519 552 HVEEHKLRMDMGLK 565 (600)
Q Consensus 552 ~~~A~~~~~~~~~~ 565 (600)
+++|...++...+.
T Consensus 87 ~~~A~~~~~~a~~~ 100 (117)
T d1elwa_ 87 FEEAKRTYEEGLKH 100 (117)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHh
Confidence 99999977665543
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.55 E-value=3.6e-07 Score=82.61 Aligned_cols=189 Identities=12% Similarity=0.009 Sum_probs=123.9
Q ss_pred HHHHHHHHhcCChHHHHHHHhcCC-----CCC----hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCC---CCC--hhHH
Q 007519 371 NCLISMYAKCGVIDNAYNIFSNMV-----SRD----LVSWNSMVMGFSHHGLANETLKVFESMLESGT---HPN--SVTF 436 (600)
Q Consensus 371 ~~l~~~~~~~~~~~~A~~~~~~~~-----~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~---~p~--~~~~ 436 (600)
......|...|++++|.+.|.+.. ..+ ..+|..+..+|.+.|++++|++.+++....-. .+. ..++
T Consensus 41 ~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 120 (290)
T d1qqea_ 41 VQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFK 120 (290)
T ss_dssp HHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHH
Confidence 345667888888888888887764 112 35788888899999999999999987665311 111 2345
Q ss_pred HHHHHHhc-ccCchHHHHHHHHHHHhhcCCCC----CcchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-------CHH-
Q 007519 437 LGILSACS-HAGLVSRGWELFNAMFDVYKIQP----GPEHYVSMINLLGRAGKIKEAEEFVLRLP-FEP-------DHR- 502 (600)
Q Consensus 437 ~~l~~~~~-~~g~~~~a~~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-------~~~- 502 (600)
..+...|. ..|++++|.+.++++.+...... ...++..++..|...|++++|.+.++++. ..| ...
T Consensus 121 ~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~ 200 (290)
T d1qqea_ 121 FELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKD 200 (290)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHH
T ss_pred HHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHH
Confidence 55555563 46999999999998765322111 14467888999999999999999998853 111 111
Q ss_pred HHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCC-----cHHHHhHHHHh--hCCcHHHHHHHH
Q 007519 503 IWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAP-----AHVVLCNIYAA--SGRHVEEHKLRM 560 (600)
Q Consensus 503 ~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~-----~~~~l~~~~~~--~g~~~~A~~~~~ 560 (600)
.+...+..+. ..|+...|...++++.+++|..+. .+..++.++.. .+.+++|+..++
T Consensus 201 ~~~~~~~~~l-~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~ 264 (290)
T d1qqea_ 201 YFLKKGLCQL-AATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFD 264 (290)
T ss_dssp HHHHHHHHHH-HTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHT
T ss_pred HHHHHHHHHH-HhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 2233334455 789999999999999999885443 23455555544 345677777654
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.53 E-value=4.3e-07 Score=73.63 Aligned_cols=114 Identities=9% Similarity=-0.022 Sum_probs=91.9
Q ss_pred HHHhcccCchHHHHHHHHHHHhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHhhhhC
Q 007519 440 LSACSHAGLVSRGWELFNAMFDVYKIQP-GPEHYVSMINLLGRAGKIKEAEEFVLRLP-FEP-DHRIWGALLGACGFCEG 516 (600)
Q Consensus 440 ~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~g 516 (600)
...|.+.|++++|...|+++.+. .| +...|..++.+|...|++++|.+.|++.. ..| +...|..++.++. ..|
T Consensus 17 gn~~~~~~~y~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~-~~g 92 (159)
T d1a17a_ 17 ANDYFKAKDYENAIKFYSQAIEL---NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM-ALG 92 (159)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTT
T ss_pred HHHHHHcCCHHHHHHHhhhcccc---chhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHH-HcC
Confidence 34567889999999999998865 56 57888899999999999999999998874 445 4578888888888 999
Q ss_pred CHHHHHHHHHHHHhhCCCCCCcHHHHhHHHH--hhCCcHHHHH
Q 007519 517 NAEIAEHAAKRLLELDPLNAPAHVVLCNIYA--ASGRHVEEHK 557 (600)
Q Consensus 517 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~--~~g~~~~A~~ 557 (600)
++++|+..+++++.+.|+++.++..+..+.. ..+.+++|..
T Consensus 93 ~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~ 135 (159)
T d1a17a_ 93 KFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIA 135 (159)
T ss_dssp CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999988888877766643 4455666654
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.52 E-value=1.6e-07 Score=70.85 Aligned_cols=90 Identities=14% Similarity=0.027 Sum_probs=78.8
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCCcHHHHhHHHHh
Q 007519 471 HYVSMINLLGRAGKIKEAEEFVLRLP-FEP-DHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAA 548 (600)
Q Consensus 471 ~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 548 (600)
....++..+.+.|++++|...+++.. ..| +...|..+..++. ..|++++|+..++++++++|+++.++..++.+|..
T Consensus 18 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~-~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~ 96 (112)
T d1hxia_ 18 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQA-ENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 96 (112)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhh-hhhhHHHhhcccccccccccccccchHHHHHHHHH
Confidence 34457788899999999999999875 555 4677888888888 99999999999999999999999999999999999
Q ss_pred hCCcHHHHHHHHH
Q 007519 549 SGRHVEEHKLRMD 561 (600)
Q Consensus 549 ~g~~~~A~~~~~~ 561 (600)
.|++++|.+.++.
T Consensus 97 ~g~~~~A~~~l~~ 109 (112)
T d1hxia_ 97 EHNANAALASLRA 109 (112)
T ss_dssp HHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 9999999996654
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.48 E-value=2.6e-06 Score=71.16 Aligned_cols=116 Identities=11% Similarity=-0.059 Sum_probs=81.2
Q ss_pred hcccCchHHHHHHHHHHHhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHhhhhCCHHH
Q 007519 443 CSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLP-FEP-DHRIWGALLGACGFCEGNAEI 520 (600)
Q Consensus 443 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~g~~~~ 520 (600)
+...|+++.|++.|.++. +|++.+|..++.+|...|++++|.+.|++.. ..| ....|..+..++. ..|++++
T Consensus 15 ~~~~~d~~~Al~~~~~i~-----~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~-~~g~~~~ 88 (192)
T d1hh8a_ 15 AADKKDWKGALDAFSAVQ-----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYY-QTEKYDL 88 (192)
T ss_dssp HHHTTCHHHHHHHHHTSS-----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHH
T ss_pred HHHCCCHHHHHHHHHhcC-----CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHH-hhccHHH
Confidence 456677777777766432 3456667777777777777777777777754 344 4556666666666 7888888
Q ss_pred HHHHHHHHHhhCCCCC----------------CcHHHHhHHHHhhCCcHHHHHHHHHHhh
Q 007519 521 AEHAAKRLLELDPLNA----------------PAHVVLCNIYAASGRHVEEHKLRMDMGL 564 (600)
Q Consensus 521 a~~~~~~~~~~~p~~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 564 (600)
|+..|+++++..|.++ .++..++.++...|++++|.+.++...+
T Consensus 89 A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~ 148 (192)
T d1hh8a_ 89 AIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS 148 (192)
T ss_dssp HHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 8888888777555433 3467889999999999999997665443
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.48 E-value=3.5e-07 Score=69.70 Aligned_cols=105 Identities=14% Similarity=-0.031 Sum_probs=82.0
Q ss_pred HHHHHHhcccCchHHHHHHHHHHHhhcCCCC-CcchHHHHHHHHhhcCC---hHHHHHHHHhCC-CCCCHH---HHHHHH
Q 007519 437 LGILSACSHAGLVSRGWELFNAMFDVYKIQP-GPEHYVSMINLLGRAGK---IKEAEEFVLRLP-FEPDHR---IWGALL 508 (600)
Q Consensus 437 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~-~~p~~~---~~~~l~ 508 (600)
..++..+...+++++|.+.|+++... .| ++.++..++.++.+.++ +++|+++++++. ..|++. ++..+.
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~---~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg 79 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAA---GSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLA 79 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH---SCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHH
Confidence 35667777889999999999999864 56 57888899999987654 456999998864 445432 566777
Q ss_pred HHHhhhhCCHHHHHHHHHHHHhhCCCCCCcHHHHhHH
Q 007519 509 GACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNI 545 (600)
Q Consensus 509 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 545 (600)
.+|. ..|++++|+..|+++++++|++..+...+..+
T Consensus 80 ~~y~-~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I 115 (122)
T d1nzna_ 80 VGNY-RLKEYEKALKYVRGLLQTEPQNNQAKELERLI 115 (122)
T ss_dssp HHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHH-HHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHH
Confidence 7788 99999999999999999999877666555443
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.46 E-value=2.9e-06 Score=76.51 Aligned_cols=125 Identities=6% Similarity=-0.017 Sum_probs=70.9
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhhhcC-CCCCC-hhhHHHHHHHHHhcCChhhHHHHhcccCC-----CC----chhHH
Q 007519 202 AMIGGFAWNGFHKESLLLFIEMKGICDN-GNNCN-VQSCNSMINGYIRFGRLEEAQNLFDTVPV-----RD----EISWT 270 (600)
Q Consensus 202 ~li~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~----~~~~~ 270 (600)
.....|...|++++|.+.|.++.+.... +.+++ ..+|..+..+|.+.|++++|...++.... .+ ..++.
T Consensus 42 ~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 121 (290)
T d1qqea_ 42 QAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKF 121 (290)
T ss_dssp HHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHH
Confidence 3456677777777777777776654211 11121 34666777777777777777776665441 11 22333
Q ss_pred HHHHHHH-hcCChHHHHHHHhhCCC-----CC----hhhHHHHHHHHHhCCChhHHHHHHHHHHHC
Q 007519 271 SMIDGYL-SVGQVSNAYYLFHNMPD-----RD----AVAWTAMISGLVQNELFVEATYLFMEMRAH 326 (600)
Q Consensus 271 ~l~~~~~-~~~~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 326 (600)
.+...|. ..|++++|+..|++..+ .+ ..++..+...+...|++++|+..|++....
T Consensus 122 ~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~ 187 (290)
T d1qqea_ 122 ELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKS 187 (290)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHh
Confidence 4444443 24666666666654432 11 224556666777777777777777776654
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.43 E-value=1.2e-06 Score=71.69 Aligned_cols=134 Identities=11% Similarity=0.029 Sum_probs=92.8
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCCCcchHHHHHHHH
Q 007519 400 SWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLL 479 (600)
Q Consensus 400 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~ 479 (600)
.+......+.+.|++++|+..|++....- |.... ..+.-......+. ..+|+.++.+|
T Consensus 15 ~l~~~G~~~~~~~~~~~Ai~~y~~al~~~--~~~~~------------~~~~~~~~~~~~~--------~~~~~nla~~y 72 (170)
T d1p5qa1 15 IVKERGTVYFKEGKYKQALLQYKKIVSWL--EYESS------------FSNEEAQKAQALR--------LASHLNLAMCH 72 (170)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTCCC------------CCSHHHHHHHHHH--------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHh--hhccc------------cchHHHhhhchhH--------HHHHHHHHHHH
Confidence 34445566777788888888877776531 11000 0000001111111 13577789999
Q ss_pred hhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCCcHHHHhHHHHhhCCcHHHH
Q 007519 480 GRAGKIKEAEEFVLRLP-FEP-DHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEH 556 (600)
Q Consensus 480 ~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 556 (600)
.+.|++++|.+.+++.. ..| +...+..+..++. ..|++++|+..|+++++++|+++.+...+..+..+.+...+..
T Consensus 73 ~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~-~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~e 150 (170)
T d1p5qa1 73 LKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHL-AVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLARE 150 (170)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhcccccchhhhhhhccccchhhhHHHHHHHH-HhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998864 556 5667777777888 9999999999999999999999999988888877666555443
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.40 E-value=6.4e-07 Score=72.54 Aligned_cols=92 Identities=16% Similarity=-0.004 Sum_probs=79.5
Q ss_pred HHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCCcHHHHhHHHHhhC
Q 007519 473 VSMINLLGRAGKIKEAEEFVLRLP-FEP-DHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASG 550 (600)
Q Consensus 473 ~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 550 (600)
...+..|.+.|++++|...|++.. ..| +...|..+...+. ..|++++|+..++++++++|+++.++..++.++...|
T Consensus 14 ~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~-~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g 92 (159)
T d1a17a_ 14 KTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYL-RTECYGYALGDATRAIELDKKYIKGYYRRAASNMALG 92 (159)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHH-hccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcC
Confidence 345677889999999999999875 455 5667777777888 9999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHhhc
Q 007519 551 RHVEEHKLRMDMGLK 565 (600)
Q Consensus 551 ~~~~A~~~~~~~~~~ 565 (600)
++++|...++.....
T Consensus 93 ~~~eA~~~~~~a~~~ 107 (159)
T d1a17a_ 93 KFRAALRDYETVVKV 107 (159)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHc
Confidence 999999977666543
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.27 E-value=9.8e-05 Score=65.08 Aligned_cols=227 Identities=10% Similarity=-0.082 Sum_probs=127.5
Q ss_pred hhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhc----ccchhhhHHHHHHHhhhcCCCchhHHHH
Q 007519 297 AVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGA----TANIDLGRQIHCVLMKTESESDLILENC 372 (600)
Q Consensus 297 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 372 (600)
+..+..+...+.+.+++++|++.|++..+.| +...+..|-..+.. ..+...+...+....+.+
T Consensus 2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---------- 68 (265)
T d1ouva_ 2 PKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---------- 68 (265)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----------
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc----------
Confidence 4455566666777788888888888877765 22233223333322 223333333333333222
Q ss_pred HHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCChhHHH-HHHHHhcccC
Q 007519 373 LISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSH----HGLANETLKVFESMLESGTHPNSVTFL-GILSACSHAG 447 (600)
Q Consensus 373 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~-~l~~~~~~~g 447 (600)
+......+...+.. .++.+.|...++...+.|..+....+. ..........
T Consensus 69 ------------------------~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~l~~~~~~~~~~~~ 124 (265)
T d1ouva_ 69 ------------------------YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTR 124 (265)
T ss_dssp ------------------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCC
T ss_pred ------------------------ccchhhccccccccccccchhhHHHHHHHhhhhhhhhhhHHHhhcccccCCCcccc
Confidence 22222233333222 345566777777766654222211111 1111122344
Q ss_pred chHHHHHHHHHHHhhcCCCCCcchHHHHHHHHhh----cCChHHHHHHHHhCCCCCCHHHHHHHHHHHhhh----hCCHH
Q 007519 448 LVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGR----AGKIKEAEEFVLRLPFEPDHRIWGALLGACGFC----EGNAE 519 (600)
Q Consensus 448 ~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~----~g~~~ 519 (600)
....+...+..... ..+...+..|+..|.. ..+...+...++......+......+...+. . ..+.+
T Consensus 125 ~~~~a~~~~~~~~~----~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~A~~~lg~~y~-~g~~~~~d~~ 199 (265)
T d1ouva_ 125 DFKKAVEYFTKACD----LNDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYH-HGEGATKNFK 199 (265)
T ss_dssp CHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HTCSSCCCHH
T ss_pred hhHHHHHHhhhhhc----ccccchhhhhhhhhccCCCcccccccchhhhhccccccccccccchhhhcc-cCcccccchh
Confidence 55666666665543 2345566667777764 4456667777666543445555555555554 3 46889
Q ss_pred HHHHHHHHHHhhCCCCCCcHHHHhHHHHh----hCCcHHHHHHHHHHhhcCC
Q 007519 520 IAEHAAKRLLELDPLNAPAHVVLCNIYAA----SGRHVEEHKLRMDMGLKGV 567 (600)
Q Consensus 520 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~ 567 (600)
.|+..|+++.+.. ++..+..|+..|.+ ..+.++|.++++..-+.|-
T Consensus 200 ~A~~~~~~aa~~g--~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~ 249 (265)
T d1ouva_ 200 EALARYSKACELE--NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA 249 (265)
T ss_dssp HHHHHHHHHHHTT--CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred hhhhhHhhhhccc--CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcC
Confidence 9999999987764 56788888888875 3478889998887776664
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.26 E-value=0.00047 Score=61.91 Aligned_cols=270 Identities=9% Similarity=0.009 Sum_probs=140.8
Q ss_pred CccchhHHHHHHHhcCChhhHHHHhccCCCCCcchHHHHHHHHHcCCChhHHHHHhhhcCCCChhhHHHHHHHHHhcCCh
Q 007519 10 LVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRV 89 (600)
Q Consensus 10 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 89 (600)
+..-...++..|.+.|.++.|..+|..+.. |..++..+.+.++++.|.+++.+. .+..+|..+..++.+....
T Consensus 13 n~~d~~~i~~~c~~~~lye~A~~lY~~~~d-----~~rl~~~~v~l~~~~~avd~~~k~--~~~~~~k~~~~~l~~~~e~ 85 (336)
T d1b89a_ 13 NNAHIQQVGDRCYDEKMYDAAKLLYNNVSN-----FGRLASTLVHLGEYQAAVDGARKA--NSTRTWKEVCFACVDGKEF 85 (336)
T ss_dssp ----------------CTTTHHHHHHHTTC-----HHHHHHHHHTTTCHHHHHHHHHHH--TCHHHHHHHHHHHHHTTCH
T ss_pred CcCCHHHHHHHHHHCCCHHHHHHHHHhCCC-----HHHHHHHHHhhccHHHHHHHHHHc--CCHHHHHHHHHHHHhCcHH
Confidence 444455677888888899999998887755 777888888888888888888766 3556888888888877666
Q ss_pred HHHHHHhhcCCCCCceeHHHHHHHHHHCCChhHHHHHhhcCCC---CCcccHHHHHHHHHhcCCHhHHHHHHHhcccCCc
Q 007519 90 CEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPI---KNVISWNAMIAGYVECCMMGEAIVLFEEMEERNV 166 (600)
Q Consensus 90 ~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 166 (600)
.-|. +.......++.....++..|-..|.+++...+++.... .+...++.++..|++.+ .++..+.+... .+.
T Consensus 86 ~la~-i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak~~-~~kl~e~l~~~--s~~ 161 (336)
T d1b89a_ 86 RLAQ-MCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFK-PQKMREHLELF--WSR 161 (336)
T ss_dssp HHHH-HTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTC-HHHHHHHHHHH--STT
T ss_pred HHHH-HHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCCccchHHHHHHHHHHHHhC-hHHHHHHHHhc--ccc
Confidence 5542 22222224444556788888888888888888886543 55566778888887754 33333333322 122
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHccCCC------------CCcchHHHHHHHHHhcCChhHHHHHHHHHHhhhcCCCCCC
Q 007519 167 VTWTSMISGYCRAGEVEEGYCLFRRMPR------------KNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCN 234 (600)
Q Consensus 167 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~------------~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 234 (600)
.....++..|-+.+-+.++.-++.++.. ++..-....+..+.+.++++...++.....+. .|
T Consensus 162 y~~~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~~i~~~~~~~~~~~f~e~~~k~~N~e~~~~~i~~yL~~-----~p- 235 (336)
T d1b89a_ 162 VNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEF-----KP- 235 (336)
T ss_dssp SCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHH-----CG-
T ss_pred CCHHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHHHHcchhhhhHHHHHHHHHccCChHHHHHHHHHHHHc-----CH-
Confidence 2222333344444444444433333322 12222233444444444444444444433322 12
Q ss_pred hhhHHHHHHHHHhcCChhhHHHHhcccCCCCchhHHHHHHHHHhcCChHHHHHHHhhCCC-CChhhHHHHHHHHHhCCCh
Q 007519 235 VQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPD-RDAVAWTAMISGLVQNELF 313 (600)
Q Consensus 235 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g~~ 313 (600)
...+.++......-+..+.. ..+.+.+++......++...+ .+....+++...|...+++
T Consensus 236 -~~i~~lL~~v~~~~d~~r~V------------------~~~~k~~~l~li~p~Le~v~~~n~~~vn~al~~lyie~~d~ 296 (336)
T d1b89a_ 236 -LLLNDLLMVLSPRLDHTRAV------------------NYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITEEDY 296 (336)
T ss_dssp -GGHHHHHHHHGGGCCHHHHH------------------HHHHHTTCTTTTHHHHHHHHTTCCHHHHHHHHHHHHHTTCH
T ss_pred -HHHHHHHHHhccCCCHHHHH------------------HHHHhcCCcHHHHHHHHHHHHcChHHHHHHHHHHHhCcchh
Confidence 22233333333333333333 333334444444444444333 2445677788888888886
Q ss_pred hH
Q 007519 314 VE 315 (600)
Q Consensus 314 ~~ 315 (600)
+.
T Consensus 297 ~~ 298 (336)
T d1b89a_ 297 QA 298 (336)
T ss_dssp HH
T ss_pred HH
Confidence 54
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.24 E-value=6.4e-06 Score=67.01 Aligned_cols=91 Identities=14% Similarity=0.095 Sum_probs=73.6
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHhCC-C-CCCHHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCCcHHHHhHHHHh
Q 007519 471 HYVSMINLLGRAGKIKEAEEFVLRLP-F-EPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAA 548 (600)
Q Consensus 471 ~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~p~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 548 (600)
+|..++.+|.+.|++++|+..+++.. . +.+...+.....++. ..|++++|+..++++++++|+++.+...+..+...
T Consensus 66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~-~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~ 144 (168)
T d1kt1a1 66 AFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQL-LMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKK 144 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 57778889999999999999998864 3 446678888888888 99999999999999999999999888888888777
Q ss_pred hCCcHHHHH-HHHHH
Q 007519 549 SGRHVEEHK-LRMDM 562 (600)
Q Consensus 549 ~g~~~~A~~-~~~~~ 562 (600)
.+...+..+ ++..|
T Consensus 145 ~~~~~e~~kk~~~~~ 159 (168)
T d1kt1a1 145 AKEHNERDRRTYANM 159 (168)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHH
Confidence 666554433 44433
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.17 E-value=0.00056 Score=61.36 Aligned_cols=280 Identities=8% Similarity=0.023 Sum_probs=165.0
Q ss_pred CCCcchHHHHHHHHHcCCChhHHHHHhhhcCCCChhhHHHHHHHHHhcCChHHHHHHhhcCCCCCceeHHHHHHHHHHCC
Q 007519 39 QRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNG 118 (600)
Q Consensus 39 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~ 118 (600)
.||..--..++..|.+.|.++.|..+|..+. -|..++..+.+.++++.|.+++.+. .+..+|..+...+.+..
T Consensus 11 ~~n~~d~~~i~~~c~~~~lye~A~~lY~~~~-----d~~rl~~~~v~l~~~~~avd~~~k~--~~~~~~k~~~~~l~~~~ 83 (336)
T d1b89a_ 11 GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS-----NFGRLASTLVHLGEYQAAVDGARKA--NSTRTWKEVCFACVDGK 83 (336)
T ss_dssp CC----------------CTTTHHHHHHHTT-----CHHHHHHHHHTTTCHHHHHHHHHHH--TCHHHHHHHHHHHHHTT
T ss_pred CCCcCCHHHHHHHHHHCCCHHHHHHHHHhCC-----CHHHHHHHHHhhccHHHHHHHHHHc--CCHHHHHHHHHHHHhCc
Confidence 4677667778888889999999999998775 5678889999999999999988755 45668888999999887
Q ss_pred ChhHHHHHhhcCCCCCcccHHHHHHHHHhcCCHhHHHHHHHhcc---cCCchhHHHHHHHHHhcCChhHHHHHHccCCC-
Q 007519 119 ELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEME---ERNVVTWTSMISGYCRAGEVEEGYCLFRRMPR- 194 (600)
Q Consensus 119 ~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~- 194 (600)
....+.- .......++.....++..|-..|.++....+++... ..+...++-++..|++.+. ++-.+.++....
T Consensus 84 e~~la~i-~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak~~~-~kl~e~l~~~s~~ 161 (336)
T d1b89a_ 84 EFRLAQM-CGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKP-QKMREHLELFWSR 161 (336)
T ss_dssp CHHHHHH-TTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCH-HHHHHHHHHHSTT
T ss_pred HHHHHHH-HHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCCccchHHHHHHHHHHHHhCh-HHHHHHHHhcccc
Confidence 7765533 222223455666788999999999999999999765 3455678889999988654 344444433211
Q ss_pred C----------CcchHHHHHHHHHhcCChhHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHhcCChhhHHHHhcccCCC
Q 007519 195 K----------NVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVR 264 (600)
Q Consensus 195 ~----------~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 264 (600)
- ....|..++..|.+.|.++.|..++ .+. .++.......+..+.+..+.+...+........
T Consensus 162 y~~~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~~---i~~-----~~~~~~~~~f~e~~~k~~N~e~~~~~i~~yL~~ 233 (336)
T d1b89a_ 162 VNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITM---MNH-----PTDAWKEGQFKDIITKVANVELYYRAIQFYLEF 233 (336)
T ss_dssp SCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHH---HHS-----TTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHH---HHc-----chhhhhHHHHHHHHHccCChHHHHHHHHHHHHc
Confidence 1 1122344444444555555444432 111 333333444555555655555444433333322
Q ss_pred CchhHHHHHHHHHhcCChHHHHHHHhhCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhc
Q 007519 265 DEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGA 344 (600)
Q Consensus 265 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 344 (600)
++...+.++......-+..+ ++..+.+.++.......++.....| +....+.+...|..
T Consensus 234 ~p~~i~~lL~~v~~~~d~~r------------------~V~~~~k~~~l~li~p~Le~v~~~n---~~~vn~al~~lyie 292 (336)
T d1b89a_ 234 KPLLLNDLLMVLSPRLDHTR------------------AVNYFSKVKQLPLVKPYLRSVQNHN---NKSVNESLNNLFIT 292 (336)
T ss_dssp CGGGHHHHHHHHGGGCCHHH------------------HHHHHHHTTCTTTTHHHHHHHHTTC---CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhccCCCHHH------------------HHHHHHhcCCcHHHHHHHHHHHHcC---hHHHHHHHHHHHhC
Confidence 33334444444443333333 4445556677777777777766554 34678888889999
Q ss_pred ccchhhhHHHHH
Q 007519 345 TANIDLGRQIHC 356 (600)
Q Consensus 345 ~~~~~~a~~~~~ 356 (600)
.++.+.-+...+
T Consensus 293 ~~d~~~l~~~i~ 304 (336)
T d1b89a_ 293 EEDYQALRTSID 304 (336)
T ss_dssp TTCHHHHHHHHH
T ss_pred cchhHHHHHHHH
Confidence 888766544443
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.15 E-value=3.6e-06 Score=64.86 Aligned_cols=90 Identities=9% Similarity=0.008 Sum_probs=71.8
Q ss_pred HHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCCcHH-------HH
Q 007519 472 YVSMINLLGRAGKIKEAEEFVLRLP-FEP-DHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHV-------VL 542 (600)
Q Consensus 472 ~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~-------~l 542 (600)
+..++..+.+.|++++|++.|++.. ..| +...+..+..++. ..|++++|+..++++++++|+++..+. .+
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~-~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~l 85 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYF-EKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHH-HcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence 4457888899999999999998864 444 5677888888888 999999999999999999988776544 45
Q ss_pred hHHHHhhCCcHHHHHHHHHH
Q 007519 543 CNIYAASGRHVEEHKLRMDM 562 (600)
Q Consensus 543 ~~~~~~~g~~~~A~~~~~~~ 562 (600)
+.++...+++++|.+.++..
T Consensus 86 g~~~~~~~~~~~A~~~~~ka 105 (128)
T d1elra_ 86 GNSYFKEEKYKDAIHFYNKS 105 (128)
T ss_dssp HHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHH
Confidence 56667778999999976544
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.13 E-value=9.2e-06 Score=64.80 Aligned_cols=126 Identities=10% Similarity=-0.044 Sum_probs=80.7
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCCCcchHHHHHHHH
Q 007519 400 SWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLL 479 (600)
Q Consensus 400 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~ 479 (600)
.+..-...+.+.|++.+|+..|.+.... -|... ...-......... ....++..++.+|
T Consensus 19 ~~~~~G~~~f~~~~y~~A~~~Y~~al~~--~~~~~-----------~~~~~~~~~~~~~--------~~~~~~~Nla~~~ 77 (153)
T d2fbna1 19 DIKEEGNEFFKKNEINEAIVKYKEALDF--FIHTE-----------EWDDQILLDKKKN--------IEISCNLNLATCY 77 (153)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHT--TTTCT-----------TCCCHHHHHHHHH--------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh--Ccchh-----------hhhhHHHHHhhhh--------HHHHHHhhHHHHH
Confidence 4445556677777788887777776653 11100 0000000000000 1123667788888
Q ss_pred hhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCCcHHHHhHHHH
Q 007519 480 GRAGKIKEAEEFVLRLP-FEP-DHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYA 547 (600)
Q Consensus 480 ~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 547 (600)
.+.|++++|++.+++.. ..| +..+|..+..++. ..|++++|+..|+++++++|+|+.+...+..+..
T Consensus 78 ~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~-~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~ 146 (153)
T d2fbna1 78 NKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANM-YFGFLEEAKENLYKAASLNPNNLDIRNSYELCVN 146 (153)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHhcccchhhhhhhccccccchhhhhhHHhHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 88888888888888754 444 5677888888888 8889999999999988888887777766655543
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.05 E-value=7.6e-06 Score=66.72 Aligned_cols=131 Identities=13% Similarity=0.056 Sum_probs=90.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCC-CcchHHHHHHHH
Q 007519 401 WNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQP-GPEHYVSMINLL 479 (600)
Q Consensus 401 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~ 479 (600)
+......+...|++++|+..|++..+. .+.. .. ..... ... .+.| ....+..++.+|
T Consensus 30 ~~~~~~~~~~~~~y~~Ai~~y~~al~~--~~~~-------~~---~~~~~-------~~~---~~~~~~~~~~~nla~~~ 87 (169)
T d1ihga1 30 LKNIGNTFFKSQNWEMAIKKYTKVLRY--VEGS-------RA---AAEDA-------DGA---KLQPVALSCVLNIGACK 87 (169)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHH-------HH---HSCHH-------HHG---GGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh--hhhh-------hh---hhhhH-------HHH---HhChhhHHHHHHHHHHH
Confidence 444556677788888888888776542 0000 00 00000 000 1233 455778889999
Q ss_pred hhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCCcHHHHhHHHHhhCCcHH
Q 007519 480 GRAGKIKEAEEFVLRLP-FEP-DHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVE 554 (600)
Q Consensus 480 ~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 554 (600)
.+.|++++|+..+++.. ..| +...|..+..++. ..|++++|+..|+++++++|+++.+...+..+..+.....+
T Consensus 88 ~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~-~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l~~~~~ 163 (169)
T d1ihga1 88 LKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQ-GLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKD 163 (169)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHH-HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998863 555 5667888888888 99999999999999999999988888888777655444433
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.03 E-value=4.2e-06 Score=63.51 Aligned_cols=94 Identities=7% Similarity=-0.167 Sum_probs=75.9
Q ss_pred HHHHHHHHhhcCChHHHHHHHHhCC-C-CCCHHHHHHHHHHHhhhh---CCHHHHHHHHHHHHhhCCCC--CCcHHHHhH
Q 007519 472 YVSMINLLGRAGKIKEAEEFVLRLP-F-EPDHRIWGALLGACGFCE---GNAEIAEHAAKRLLELDPLN--APAHVVLCN 544 (600)
Q Consensus 472 ~~~l~~~~~~~g~~~~A~~~~~~~~-~-~p~~~~~~~l~~~~~~~~---g~~~~a~~~~~~~~~~~p~~--~~~~~~l~~ 544 (600)
...++..+...+++++|.+.|++.. . +.+..++..+..++. +. ++.++|+.+++++++.+|.+ +.++..|+.
T Consensus 2 ~~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~-~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~ 80 (122)
T d1nzna_ 2 MEAVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLV-RTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAV 80 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHT-TSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH-HhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHH
Confidence 3567888899999999999999975 4 446678888887776 54 45667999999999988744 347889999
Q ss_pred HHHhhCCcHHHHHHHHHHhhcC
Q 007519 545 IYAASGRHVEEHKLRMDMGLKG 566 (600)
Q Consensus 545 ~~~~~g~~~~A~~~~~~~~~~~ 566 (600)
+|.+.|++++|.+.++.+.+..
T Consensus 81 ~y~~~g~~~~A~~~~~~aL~~~ 102 (122)
T d1nzna_ 81 GNYRLKEYEKALKYVRGLLQTE 102 (122)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHhhhHHHHHHHHHHHHhC
Confidence 9999999999999887766543
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.03 E-value=1.1e-05 Score=65.56 Aligned_cols=62 Identities=13% Similarity=-0.165 Sum_probs=55.9
Q ss_pred HHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCCcHHHHhHHHHhhCCcHHHHHHHHHHhhc
Q 007519 503 IWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLK 565 (600)
Q Consensus 503 ~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 565 (600)
+++.+..++. +.|++++|+..++++++++|+++.++..++.+|...|++++|...++...+.
T Consensus 64 ~~~nla~~y~-k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 125 (170)
T d1p5qa1 64 SHLNLAMCHL-KLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL 125 (170)
T ss_dssp HHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-hhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 5666777777 9999999999999999999999999999999999999999999988776554
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.01 E-value=1.5e-05 Score=59.60 Aligned_cols=86 Identities=7% Similarity=-0.062 Sum_probs=41.8
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCC-CcchHHHHHHHHhhcC
Q 007519 405 VMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQP-GPEHYVSMINLLGRAG 483 (600)
Q Consensus 405 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g 483 (600)
...+.+.|++++|+..|++..... +-+...|..+..++.+.|++++|...++++.+. .| +...+..++..|...|
T Consensus 23 g~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~---~p~~~~a~~~la~~y~~~g 98 (112)
T d1hxia_ 23 GLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARML---DPKDIAVHAALAVSHTNEH 98 (112)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHhhhcccc-cccchhhhhhhhhhhhhhhHHHhhccccccccc---ccccccchHHHHHHHHHCC
Confidence 334445555555555555555431 223344444445555555555555555555432 33 2444555555555555
Q ss_pred ChHHHHHHHHh
Q 007519 484 KIKEAEEFVLR 494 (600)
Q Consensus 484 ~~~~A~~~~~~ 494 (600)
++++|.+.+++
T Consensus 99 ~~~~A~~~l~~ 109 (112)
T d1hxia_ 99 NANAALASLRA 109 (112)
T ss_dssp HHHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 55555555443
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.95 E-value=1e-06 Score=86.20 Aligned_cols=87 Identities=10% Similarity=-0.041 Sum_probs=33.4
Q ss_pred cchHHHHHHHHhhcCChHHHHHHHHhCCCCCC-HHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCCcHHHHhHHHH
Q 007519 469 PEHYVSMINLLGRAGKIKEAEEFVLRLPFEPD-HRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYA 547 (600)
Q Consensus 469 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~-~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 547 (600)
...+..++..+.+.|+.++|...+++.. .++ ...+..++..+. ..|++++|+..|+++++++|+++.+|+.||.++.
T Consensus 120 ~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~LG~l~~-~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~ 197 (497)
T d1ya0a1 120 RVKSSQLGIISNKQTHTSAIVKPQSSSC-SYICQHCLVHLGDIAR-YRNQTSQAESYYRHAAQLVPSNGQPYNQLAILAS 197 (497)
T ss_dssp -----------------------CCHHH-HHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHhCCCHHHHHHHHHHHh-CCCHHHHHHHHHHHHH-HcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHH
Confidence 4445555555555555555554443321 111 123444444444 5556666666666666666655566666666666
Q ss_pred hhCCcHHHHH
Q 007519 548 ASGRHVEEHK 557 (600)
Q Consensus 548 ~~g~~~~A~~ 557 (600)
..|+..+|..
T Consensus 198 ~~~~~~~A~~ 207 (497)
T d1ya0a1 198 SKGDHLTTIF 207 (497)
T ss_dssp HTTCHHHHHH
T ss_pred HcCCHHHHHH
Confidence 6666665555
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.91 E-value=2.7e-05 Score=61.92 Aligned_cols=63 Identities=16% Similarity=-0.045 Sum_probs=55.8
Q ss_pred HHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCCcHHHHhHHHHhhCCcHHHHHHHHHHhhc
Q 007519 502 RIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLK 565 (600)
Q Consensus 502 ~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 565 (600)
.++..+..++. +.|++++|+..++++++++|.+..+|..++.++...|++++|...++...+.
T Consensus 68 ~~~~Nla~~~~-~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l 130 (153)
T d2fbna1 68 SCNLNLATCYN-KNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASL 130 (153)
T ss_dssp HHHHHHHHHHH-HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHH-HhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHh
Confidence 35666777777 9999999999999999999999999999999999999999999977665544
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.86 E-value=8.9e-06 Score=64.08 Aligned_cols=45 Identities=16% Similarity=0.140 Sum_probs=32.5
Q ss_pred CCHHHHHHHHHHHHhhCCCCCCcHHHHhHHHHhhCCcHHHHHHHHHHhhcCC
Q 007519 516 GNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGV 567 (600)
Q Consensus 516 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 567 (600)
+++++|...|+++++++|++...+..|... .+|.+++.+..+.|+
T Consensus 100 ~~~~~A~~~~~kal~l~P~~~~~~~~L~~~-------~ka~~~~~e~~k~~~ 144 (145)
T d1zu2a1 100 HNFDLATQFFQQAVDEQPDNTHYLKSLEMT-------AKAPQLHAEAYKQGL 144 (145)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHH-------HTHHHHHHHHHHSSS
T ss_pred HhHHHhhhhhhcccccCCCHHHHHHHHHHH-------HHHHHHHHHHHHHhc
Confidence 346889999999999999777666666554 456666666666654
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.81 E-value=3.6e-05 Score=62.82 Aligned_cols=118 Identities=17% Similarity=0.079 Sum_probs=82.3
Q ss_pred HHHhcccCchHHHHHHHHHHHhhcCCCCCcchHHHHHHHHhhcCChH-HHHHHHHhCCCCCCHHHHHHHHHHHhhhhCCH
Q 007519 440 LSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIK-EAEEFVLRLPFEPDHRIWGALLGACGFCEGNA 518 (600)
Q Consensus 440 ~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~-~A~~~~~~~~~~p~~~~~~~l~~~~~~~~g~~ 518 (600)
.......|++++|.+.|.++...+ +....-. + ..+.+- ....-++. .....+..+...+. ..|++
T Consensus 18 g~~~~~~g~~e~A~~~~~~AL~l~---rG~~l~~-----~-~~~~w~~~~r~~l~~----~~~~a~~~la~~~~-~~g~~ 83 (179)
T d2ff4a2 18 GVHAAAAGRFEQASRHLSAALREW---RGPVLDD-----L-RDFQFVEPFATALVE----DKVLAHTAKAEAEI-ACGRA 83 (179)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTC---CSSTTGG-----G-TTSTTHHHHHHHHHH----HHHHHHHHHHHHHH-HTTCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhC---ccccccc-----C-cchHHHHHHHHHHHH----HHHHHHHHHHHHHH-HCCCc
Confidence 345678899999999999988642 2211000 0 011111 11111111 01245667777788 99999
Q ss_pred HHHHHHHHHHHhhCCCCCCcHHHHhHHHHhhCCcHHHHHHHHHHh-----hcCCccCC
Q 007519 519 EIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMG-----LKGVRKVP 571 (600)
Q Consensus 519 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~ 571 (600)
++|+..++++++.+|.+...|..++.+|.+.|++++|.+.|+.+. +-|+.|.|
T Consensus 84 ~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~ 141 (179)
T d2ff4a2 84 SAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGP 141 (179)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCH
T ss_pred hHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCH
Confidence 999999999999999999999999999999999999999888764 35776655
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=97.80 E-value=0.00074 Score=59.15 Aligned_cols=61 Identities=8% Similarity=0.006 Sum_probs=30.8
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHhhCCC-CChhhHHHHHHHHHh----CCChhHHHHHHHHHHHCC
Q 007519 267 ISWTSMIDGYLSVGQVSNAYYLFHNMPD-RDAVAWTAMISGLVQ----NELFVEATYLFMEMRAHG 327 (600)
Q Consensus 267 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g 327 (600)
..+..|...+...+++++|++.|++..+ .+..++..|...|.. ..+...|...+......+
T Consensus 3 ~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~ 68 (265)
T d1ouva_ 3 KELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN 68 (265)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc
Confidence 3444444445555555555555554432 234444444444443 345566666666655544
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.76 E-value=2.4e-05 Score=63.61 Aligned_cols=64 Identities=11% Similarity=-0.147 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCCcHHHHhHHHHhhCCcHHHHHHHHHHhhc
Q 007519 501 HRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLK 565 (600)
Q Consensus 501 ~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 565 (600)
...+..+..++. +.|++++|+..+.++++++|+++.+|..++.++.+.|++++|.+.++...+.
T Consensus 77 ~~~~~nla~~~~-~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l 140 (169)
T d1ihga1 77 LSCVLNIGACKL-KMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI 140 (169)
T ss_dssp HHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-hhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHh
Confidence 345666777777 9999999999999999999999999999999999999999999976655543
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.75 E-value=0.0001 Score=56.30 Aligned_cols=58 Identities=12% Similarity=0.048 Sum_probs=33.5
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccCchHHHHHHHHHHHh
Q 007519 403 SMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFD 461 (600)
Q Consensus 403 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 461 (600)
.+...+...|++++|+..|++..+.+ +.+...+..+..+|.+.|++++|.+.++++++
T Consensus 9 ~~G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 66 (128)
T d1elra_ 9 ELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIE 66 (128)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHHH
Confidence 34555666666666666666666542 33345555555666666666666666666554
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.73 E-value=3.8e-05 Score=55.15 Aligned_cols=75 Identities=20% Similarity=0.092 Sum_probs=57.3
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHhCC--------CCCC-HHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCCcHHH
Q 007519 471 HYVSMINLLGRAGKIKEAEEFVLRLP--------FEPD-HRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVV 541 (600)
Q Consensus 471 ~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~p~-~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 541 (600)
.+-.++..+.+.|++++|...+++.. ..++ ..++..+..++. +.|++++|+..++++++++|+++.++..
T Consensus 7 dc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~-~~g~~~~A~~~y~~aL~l~P~~~~a~~N 85 (95)
T d1tjca_ 7 DSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVY-QQGDLDKALLLTKKLLELDPEHQRANGN 85 (95)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHH-hcCChHHHHHHHHHHHHhCcCCHHHHHH
Confidence 34457777778888888877776642 1222 456788888888 9999999999999999999999888887
Q ss_pred HhHHH
Q 007519 542 LCNIY 546 (600)
Q Consensus 542 l~~~~ 546 (600)
+....
T Consensus 86 l~~~~ 90 (95)
T d1tjca_ 86 LKYFE 90 (95)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 75543
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.69 E-value=0.00011 Score=59.31 Aligned_cols=62 Identities=10% Similarity=-0.161 Sum_probs=54.8
Q ss_pred HHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCCcHHHHhHHHHhhCCcHHHHHHHHHHhhc
Q 007519 503 IWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLK 565 (600)
Q Consensus 503 ~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 565 (600)
.+..+..++. +.|++++|+..++++++++|+++.++..++.++...|++++|...++...+.
T Consensus 66 ~~~Nla~~~~-~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l 127 (168)
T d1kt1a1 66 AFLNLAMCYL-KLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV 127 (168)
T ss_dssp HHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred HHHhHHHHHH-HhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4555666677 9999999999999999999999999999999999999999999977766543
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.64 E-value=2.4e-05 Score=68.31 Aligned_cols=130 Identities=11% Similarity=-0.019 Sum_probs=88.6
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCCC-cchHHHHHHHHhhcCChH
Q 007519 408 FSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPG-PEHYVSMINLLGRAGKIK 486 (600)
Q Consensus 408 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~ 486 (600)
..+.|++++|+..+++..+.. +-+...+..+...++..|++++|.+.++.+.+. .|+ ...+..+..++...+..+
T Consensus 6 aL~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l---~P~~~~~~~~l~~ll~a~~~~~ 81 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL---FPEYLPGASQLRHLVKAAQARK 81 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHhccccH
Confidence 345788999999999888752 445577788888899999999999999988864 664 455555666665555555
Q ss_pred HHHHHHHhC--CCCCCHHH-HHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCCcHHHH
Q 007519 487 EAEEFVLRL--PFEPDHRI-WGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVL 542 (600)
Q Consensus 487 ~A~~~~~~~--~~~p~~~~-~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 542 (600)
++..-.... ...|+... +......+. ..|+.++|...++++.+..|..+..+...
T Consensus 82 ~a~~~~~~~~~~~~p~~~~~~l~~a~~~~-~~gd~~~A~~~~~~a~e~~p~~~~~~~~~ 139 (264)
T d1zbpa1 82 DFAQGAATAKVLGENEELTKSLVSFNLSM-VSQDYEQVSELALQIEELRQEKGFLANDT 139 (264)
T ss_dssp HHTTSCCCEECCCSCHHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHCCCCCEEETTE
T ss_pred HHHHHhhhhhcccCchHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHhcCCCCCcccccc
Confidence 443332221 12343332 333334455 88999999999999999999777765543
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.44 E-value=2.7e-05 Score=75.73 Aligned_cols=127 Identities=10% Similarity=-0.019 Sum_probs=54.7
Q ss_pred cCChHHHHHHHhcCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccCchHHHHHHH
Q 007519 380 CGVIDNAYNIFSNMV---SRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELF 456 (600)
Q Consensus 380 ~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 456 (600)
.+.++.|...+.... .++...+..+...+.+.|+.++|...+...... .| ..++..+...+...|++++|...|
T Consensus 99 ~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~~-~~~~~~LG~l~~~~~~~~~A~~~y 175 (497)
T d1ya0a1 99 SGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSY--IC-QHCLVHLGDIARYRNQTSQAESYY 175 (497)
T ss_dssp HHHHHHHHHHHTC-------------------------------CCHHHHH--HH-HHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCC--CH-HHHHHHHHHHHHHcccHHHHHHHH
Confidence 445555555555443 234445555566666666666666655554331 11 234455556666666666666666
Q ss_pred HHHHhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHh
Q 007519 457 NAMFDVYKIQP-GPEHYVSMINLLGRAGKIKEAEEFVLRLP--FEPDHRIWGALLGACG 512 (600)
Q Consensus 457 ~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~ 512 (600)
+++.+. .| +...|+.|+..+...|+..+|...|.+.. .+|-..++.++...+.
T Consensus 176 ~~A~~l---~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~ 231 (497)
T d1ya0a1 176 RHAAQL---VPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALS 231 (497)
T ss_dssp HHHHHH---CTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHH
T ss_pred HHHHHH---CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 666643 45 35566666666666666666666665542 3444555555554443
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.42 E-value=0.00021 Score=56.87 Aligned_cols=61 Identities=16% Similarity=-0.031 Sum_probs=45.6
Q ss_pred HHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCC-----------CCcHHHHhHHHHhhCCcHHHHHHHHHHh
Q 007519 502 RIWGALLGACGFCEGNAEIAEHAAKRLLELDPLN-----------APAHVVLCNIYAASGRHVEEHKLRMDMG 563 (600)
Q Consensus 502 ~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~-----------~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 563 (600)
..|+.+..++. ..|++++|+..+++++++.|.. ..++..++.+|...|++++|...++...
T Consensus 56 ~~~~nlg~~~~-~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al 127 (156)
T d2hr2a1 56 FCHAGLAEALA-GLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVV 127 (156)
T ss_dssp HHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HcCccchhhHhhhhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777777 8888888888888888754421 2257788999999999999999666544
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.38 E-value=0.00029 Score=55.99 Aligned_cols=93 Identities=13% Similarity=-0.020 Sum_probs=59.8
Q ss_pred hcccCchHHHHHHHHHHHhhcCCCCC----------cchHHHHHHHHhhcCChHHHHHHHHhCC--------CCCC----
Q 007519 443 CSHAGLVSRGWELFNAMFDVYKIQPG----------PEHYVSMINLLGRAGKIKEAEEFVLRLP--------FEPD---- 500 (600)
Q Consensus 443 ~~~~g~~~~a~~~~~~~~~~~~~~p~----------~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~p~---- 500 (600)
+...|++++|++.|++.++...-.|+ ..+|+.++.+|...|++++|.+.+++.. ..++
T Consensus 19 ~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 98 (156)
T d2hr2a1 19 QLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKL 98 (156)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccch
Confidence 34445566666666655543222221 2456677778888888888777765531 2222
Q ss_pred -HHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCC
Q 007519 501 -HRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNA 536 (600)
Q Consensus 501 -~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 536 (600)
...+..+..++. ..|++++|+..|++++++.|...
T Consensus 99 ~~~a~~~~g~~~~-~lg~~eeA~~~~~~Al~l~~~~~ 134 (156)
T d2hr2a1 99 WISAVYSRALALD-GLGRGAEAMPEFKKVVEMIEERK 134 (156)
T ss_dssp HHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHCC
T ss_pred hHHHHhhhHHHHH-HHHHHHHHHHHHHHHHHhhHHhh
Confidence 224566677788 99999999999999999876443
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.34 E-value=8.4e-05 Score=58.24 Aligned_cols=94 Identities=11% Similarity=0.049 Sum_probs=62.2
Q ss_pred cccCchHHHHHHHHHHHhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHhhhhCCHHHHH
Q 007519 444 SHAGLVSRGWELFNAMFDVYKIQP-GPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAE 522 (600)
Q Consensus 444 ~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~g~~~~a~ 522 (600)
.+.+.+++|...|+.+.+. .| ++..+..++.+|...+++..+.+ ..+.+++|+
T Consensus 8 ~r~~~fe~A~~~~e~al~~---~P~~~~~~~~~g~~l~~~~~~~~~~e-----------------------~~~~~~~Ai 61 (145)
T d1zu2a1 8 DRILLFEQIRQDAENTYKS---NPLDADNLTRWGGVLLELSQFHSISD-----------------------AKQMIQEAI 61 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHSCHHH-----------------------HHHHHHHHH
T ss_pred HHHccHHHHHHHHHHHHhh---CCcchHHHHHHHHHHHHhhhhhhhhH-----------------------HHHHHHHHH
Confidence 3445566666666666543 44 35555555555544443332222 235568899
Q ss_pred HHHHHHHhhCCCCCCcHHHHhHHHHhhCC-----------cHHHHHHHHHHh
Q 007519 523 HAAKRLLELDPLNAPAHVVLCNIYAASGR-----------HVEEHKLRMDMG 563 (600)
Q Consensus 523 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~-----------~~~A~~~~~~~~ 563 (600)
..++++++++|+++.+|..++.+|...|+ +++|.+.++...
T Consensus 62 ~~~~kAl~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal 113 (145)
T d1zu2a1 62 TKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAV 113 (145)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhccc
Confidence 99999999999999999999999988764 567777665443
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.21 E-value=0.00091 Score=54.15 Aligned_cols=121 Identities=9% Similarity=0.054 Sum_probs=69.6
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHhcCChhhHHHHhcccCCCCchhHHHHHHHHHhcC
Q 007519 201 TAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVG 280 (600)
Q Consensus 201 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~ 280 (600)
..........|++++|.+.|...+..+....-++.. ..+-+...-..+.+.....+..+...+...|
T Consensus 15 ~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~-------------~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g 81 (179)
T d2ff4a2 15 KTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLR-------------DFQFVEPFATALVEDKVLAHTAKAEAEIACG 81 (179)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGT-------------TSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCc-------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 344456778889999999888888752211111110 0000000001111112334556667777777
Q ss_pred ChHHHHHHHhhCCC---CChhhHHHHHHHHHhCCChhHHHHHHHHHHH-----CCCCCChhH
Q 007519 281 QVSNAYYLFHNMPD---RDAVAWTAMISGLVQNELFVEATYLFMEMRA-----HGVPPLNAT 334 (600)
Q Consensus 281 ~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~g~~p~~~~ 334 (600)
++++|+..++.+.. .+...|..++.+|...|+..+|++.|+++.+ .|+.|+..+
T Consensus 82 ~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l 143 (179)
T d2ff4a2 82 RASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 143 (179)
T ss_dssp CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred CchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence 77777777776644 3556777777777777777777777777533 466666544
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=97.17 E-value=0.1 Score=49.01 Aligned_cols=326 Identities=9% Similarity=-0.031 Sum_probs=168.9
Q ss_pred HHHHHHhcCChhHHHHHHccCCCCCcchHHHHHHHHHh--cCChhHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHhcC
Q 007519 172 MISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAW--NGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFG 249 (600)
Q Consensus 172 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 249 (600)
.+.-..+.|+...+.++...+..-....|...-..-.. .....+...++++-- +.+.....-...+..+.+.+
T Consensus 12 ~a~~a~~~~~~~~~~~~~~~L~dypL~pYl~~~~l~~~~~~~~~~~i~~Fl~~~p-----~~P~~~~lr~~~l~~L~~~~ 86 (450)
T d1qsaa1 12 QIKQAWDNRQMDVVEQMMPGLKDYPLYPYLEYRQITDDLMNQPAVTVTNFVRANP-----TLPPARTLQSRFVNELARRE 86 (450)
T ss_dssp HHHHHHHTTCHHHHHHHSGGGTTSTTHHHHHHHHHHHTGGGCCHHHHHHHHHHCT-----TCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHCCCHHHHHHHHhhhcCCCCHHHHHHHHHHhccccCCHHHHHHHHHHCC-----CChhHHHHHHHHHHHHHhcc
Confidence 34456778899999988888864334455443332222 223334333332211 11111222234456677788
Q ss_pred ChhhHHHHhcccCCCCchhHHHHHHHHHhcCChHHHHHHHhhCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCC
Q 007519 250 RLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVP 329 (600)
Q Consensus 250 ~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 329 (600)
+++.....+.. .+.+...-.....+....|+.+.|...+..+-.. .....+....+|..+...| .
T Consensus 87 ~w~~~~~~~~~-~p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~-------------~~~~p~~c~~l~~~~~~~~-~ 151 (450)
T d1qsaa1 87 DWRGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLT-------------GKSQPNACDKLFSVWRASG-K 151 (450)
T ss_dssp CHHHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSC-------------SSCCCTHHHHHHHHHHHTT-C
T ss_pred CHHHHHHhccC-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc-------------CCCCchHHHHHHHHHHhcC-C
Confidence 88777766543 2344555556667777788877776655432110 0112333344445444443 2
Q ss_pred CChhHHHHHHHHHhcccchhhhHHHHHHHhhhcCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHH
Q 007519 330 PLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFS 409 (600)
Q Consensus 330 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~ 409 (600)
++...+-.-+......|+...+..+...+... ........+..... ...+....... ..+......+..++.
T Consensus 152 lt~~~~~~R~~~~l~~~~~~~a~~l~~~l~~~----~~~~~~a~~~l~~~---p~~~~~~~~~~-~~~~~~~~~~~~~l~ 223 (450)
T d1qsaa1 152 QDPLAYLERIRLAMKAGNTGLVTVLAGQMPAD----YQTIASAIISLANN---PNTVLTFARTT-GATDFTRQMAAVAFA 223 (450)
T ss_dssp SCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGG----GHHHHHHHHHHHHC---GGGHHHHHHHS-CCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCChhhHHHHHhhCChh----HHHHHHHHHHHHhC---hHhHHHHHhcC-CCChhhhHHHHHHHH
Confidence 33333333344444556666666655432211 12233334433332 23333322222 223333333333333
Q ss_pred h--cCChHHHHHHHHHHHHcCCCCChhHH----HHHHHHhcccCchHHHHHHHHHHHhhcCCCCCcchHHHHHHHHhhcC
Q 007519 410 H--HGLANETLKVFESMLESGTHPNSVTF----LGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAG 483 (600)
Q Consensus 410 ~--~~~~~~a~~~~~~m~~~~~~p~~~~~----~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 483 (600)
+ ..+.+.+..++....... ..+.... ..+.......+..+.+...+...... ..+......++......+
T Consensus 224 rla~~d~~~a~~~l~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~w~~~~al~~~ 299 (450)
T d1qsaa1 224 SVARQDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---SQSTSLIERRVRMALGTG 299 (450)
T ss_dssp HHHHHCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---CCCHHHHHHHHHHHHHHT
T ss_pred HHhccChhHHHHHHHhhhhcc-cccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhccc---ccchHHHHHHHHHHHHcC
Confidence 2 356778888888876643 2222222 12223444566677777777665542 234444444555566778
Q ss_pred ChHHHHHHHHhCCCCCC--HHHHHHHHHHHhhhhCCHHHHHHHHHHHHh
Q 007519 484 KIKEAEEFVLRLPFEPD--HRIWGALLGACGFCEGNAEIAEHAAKRLLE 530 (600)
Q Consensus 484 ~~~~A~~~~~~~~~~p~--~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~ 530 (600)
++..+...++.++..|. ..-.-.+..+.. ..|+.+.|...|+.+..
T Consensus 300 ~~~~~~~~~~~l~~~~~~~~r~~YW~gRa~~-~~G~~~~A~~~~~~~a~ 347 (450)
T d1qsaa1 300 DRRGLNTWLARLPMEAKEKDEWRYWQADLLL-ERGREAEAKEILHQLMQ 347 (450)
T ss_dssp CHHHHHHHHHHSCTTGGGSHHHHHHHHHHHH-HTTCHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHhcCcccccHHHHHHHHHHHHH-HcCChhhHHHHHHHHhc
Confidence 88999999888874442 233344556667 88899999888888764
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.08 E-value=0.00014 Score=63.42 Aligned_cols=120 Identities=15% Similarity=0.097 Sum_probs=84.4
Q ss_pred hcccCchHHHHHHHHHHHhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhCC-CCCCHH-HHHHHHHHHhhhhCCHH
Q 007519 443 CSHAGLVSRGWELFNAMFDVYKIQP-GPEHYVSMINLLGRAGKIKEAEEFVLRLP-FEPDHR-IWGALLGACGFCEGNAE 519 (600)
Q Consensus 443 ~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~-~~~~l~~~~~~~~g~~~ 519 (600)
..+.|++++|+..+++.++. .| +...+..++..|+..|++++|.+.++... ..|+.. .+..+...+. ..+..+
T Consensus 6 aL~~G~l~eAl~~l~~al~~---~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~-a~~~~~ 81 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIKA---SPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVK-AAQARK 81 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHHT---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH-HHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH-hccccH
Confidence 34679999999999999875 67 68899999999999999999999999875 666544 4444444444 444444
Q ss_pred HHHHHHHHHHh-hCCCCCCcHHHHhHHHHhhCCcHHHHHHHHHHhhcC
Q 007519 520 IAEHAAKRLLE-LDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKG 566 (600)
Q Consensus 520 ~a~~~~~~~~~-~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 566 (600)
++.....+... ..|++...+...+.++...|+.++|.+.++.+.+..
T Consensus 82 ~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~ 129 (264)
T d1zbpa1 82 DFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELR 129 (264)
T ss_dssp HHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Confidence 33332222111 234334455566777889999999999887776543
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.80 E-value=0.0022 Score=45.47 Aligned_cols=64 Identities=11% Similarity=-0.177 Sum_probs=51.5
Q ss_pred HHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCC-------CcHHHHhHHHHhhCCcHHHHHHHHHHhhcC
Q 007519 502 RIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNA-------PAHVVLCNIYAASGRHVEEHKLRMDMGLKG 566 (600)
Q Consensus 502 ~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 566 (600)
..+-.+...+. ..|++++|+..+++++++.|.++ .++..|+.++.+.|++++|...++...+..
T Consensus 6 ddc~~lG~~~~-~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~ 76 (95)
T d1tjca_ 6 EDSFELGKVAY-TEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD 76 (95)
T ss_dssp HHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhC
Confidence 33445667777 99999999999999999766442 468889999999999999999887765543
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=94.97 E-value=1.4 Score=40.76 Aligned_cols=51 Identities=10% Similarity=-0.063 Sum_probs=26.2
Q ss_pred HHHHHhcCChhHHHHHHccCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHH
Q 007519 173 ISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMK 224 (600)
Q Consensus 173 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 224 (600)
+..+.+.+++......+..-+ .+...-.....+....|+.+.|...+..+-
T Consensus 79 l~~L~~~~~w~~~~~~~~~~p-~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW 129 (450)
T d1qsaa1 79 VNELARREDWRGLLAFSPEKP-GTTEAQCNYYYAKWNTGQSEEAWQGAKELW 129 (450)
T ss_dssp HHHHHHTTCHHHHHHHCCSCC-SSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhccCHHHHHHhccCCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 445555666665555443221 123333445555666666666666555544
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=94.89 E-value=0.41 Score=34.28 Aligned_cols=141 Identities=12% Similarity=0.145 Sum_probs=91.8
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCCCcchHHHHHHHHhhcCChHH
Q 007519 408 FSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKE 487 (600)
Q Consensus 408 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 487 (600)
+.-.|..++..+++.+.... .+..-|+.++--....-+-+-..+.++.+-+-+.+.|-. ....++..+...+
T Consensus 12 ~ildG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDls~C~-Nlk~vv~C~~~~n---- 83 (161)
T d1wy6a1 12 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQ-NLKSVVECGVINN---- 83 (161)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCS-CTHHHHHHHHHTT----
T ss_pred HHHhhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhhhcCchhhh-cHHHHHHHHHHhc----
Confidence 45578888888888877653 234445555544444445555566666665443433311 1223344444433
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCCcHHHHhHHHHhhCCcHHHHHHHHHHhhcCC
Q 007519 488 AEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGV 567 (600)
Q Consensus 488 A~~~~~~~~~~p~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 567 (600)
.+...++..+.... .+|.-++-.++++.+++.+.-+|.....++.+|.+.|+..++.+++.+.-++|+
T Consensus 84 -----------~~se~vdlALd~lv-~~~kkd~Ld~i~~~l~kn~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~ 151 (161)
T d1wy6a1 84 -----------TLNEHVNKALDILV-IQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGE 151 (161)
T ss_dssp -----------CCCHHHHHHHHHHH-HTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred -----------chHHHHHHHHHHHH-HhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhH
Confidence 23344555566666 889999989999987775544889999999999999999999999988888887
Q ss_pred c
Q 007519 568 R 568 (600)
Q Consensus 568 ~ 568 (600)
+
T Consensus 152 K 152 (161)
T d1wy6a1 152 K 152 (161)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=94.74 E-value=0.14 Score=38.21 Aligned_cols=44 Identities=5% Similarity=0.057 Sum_probs=21.7
Q ss_pred ChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccCchHHHHHHHHHHHh
Q 007519 413 LANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFD 461 (600)
Q Consensus 413 ~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 461 (600)
|+++|+++|++..+.|. | .....+. .....+.++|.+++++..+
T Consensus 8 d~~~A~~~~~kaa~~g~-~--~a~~~l~--~~~~~~~~~a~~~~~~aa~ 51 (133)
T d1klxa_ 8 DLKKAIQYYVKACELNE-M--FGCLSLV--SNSQINKQKLFQYLSKACE 51 (133)
T ss_dssp HHHHHHHHHHHHHHTTC-T--THHHHHH--TCTTSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCC-h--hhhhhhc--cccccCHHHHHHHHhhhhc
Confidence 45666666666666542 1 1122222 2333455566666665554
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=94.68 E-value=0.2 Score=37.31 Aligned_cols=113 Identities=7% Similarity=-0.057 Sum_probs=68.2
Q ss_pred CchHHHHHHHHHHHhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHhh---hhCCHHHHHH
Q 007519 447 GLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGF---CEGNAEIAEH 523 (600)
Q Consensus 447 g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~---~~g~~~~a~~ 523 (600)
.|+++|.++|++..+. + ++.....|+. ....+.++|.+++++.-..-++.....+...+.. ...|.++|++
T Consensus 7 kd~~~A~~~~~kaa~~-g---~~~a~~~l~~--~~~~~~~~a~~~~~~aa~~g~~~a~~~Lg~~y~~g~~~~~d~~~A~~ 80 (133)
T d1klxa_ 7 KDLKKAIQYYVKACEL-N---EMFGCLSLVS--NSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQ 80 (133)
T ss_dssp HHHHHHHHHHHHHHHT-T---CTTHHHHHHT--CTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred cCHHHHHHHHHHHHHC-C---Chhhhhhhcc--ccccCHHHHHHHHhhhhcccchhhhhhHHHhhhhccccchhhHHHHH
Confidence 3677788888877664 3 2223333332 3455777888887775433344444444444430 1346778888
Q ss_pred HHHHHHhhCCCCCCcHHHHhHHHHh----hCCcHHHHHHHHHHhhcCC
Q 007519 524 AAKRLLELDPLNAPAHVVLCNIYAA----SGRHVEEHKLRMDMGLKGV 567 (600)
Q Consensus 524 ~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~ 567 (600)
.++++.+.. ++.....|+..|.. ..+.++|.++++..-+.|.
T Consensus 81 ~~~~aa~~g--~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~ 126 (133)
T d1klxa_ 81 YYSKACGLN--DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 126 (133)
T ss_dssp HHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHhhhhccC--cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCC
Confidence 888876643 45667777777765 3577788887777666554
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.75 E-value=0.16 Score=36.89 Aligned_cols=71 Identities=11% Similarity=-0.007 Sum_probs=48.2
Q ss_pred CCcchHHHHHHHHhhcC---ChHHHHHHHHhCC-CCC-CH-HHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCCc
Q 007519 467 PGPEHYVSMINLLGRAG---KIKEAEEFVLRLP-FEP-DH-RIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPA 538 (600)
Q Consensus 467 p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~-~~p-~~-~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 538 (600)
|++.+--.++++++++. +.+++..+++++. ..| +. ..+..+.-++. +.|++++|.+.++++++++|+|..+
T Consensus 33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yy-klgdy~~A~~~~~~~L~ieP~n~qA 109 (124)
T d2pqrb1 33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCY-KLGEYSMAKRYVDTLFEHERNNKQV 109 (124)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHccCCCcHHH
Confidence 44556666777777665 4456777777653 334 33 34555666677 8899999999999999999965544
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=93.31 E-value=0.93 Score=32.44 Aligned_cols=140 Identities=9% Similarity=0.021 Sum_probs=76.2
Q ss_pred HHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhcccchhhhHHHHHHHhhhcCCCchhHHHHHHHHHHhcCChHHH
Q 007519 307 LVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNA 386 (600)
Q Consensus 307 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 386 (600)
+.-.|..++..+++.+.... .+..-|+.++--....-+-+.....++.+-+. .| ...++++...
T Consensus 12 ~ildG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~---FD----------ls~C~Nlk~v 75 (161)
T d1wy6a1 12 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FD----------LDKCQNLKSV 75 (161)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SC----------GGGCSCTHHH
T ss_pred HHHhhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhhh---cC----------chhhhcHHHH
Confidence 34456666666666666553 23344444444333333434333333333221 01 0122233333
Q ss_pred HHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccCchHHHHHHHHHHHhhcCC
Q 007519 387 YNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKI 465 (600)
Q Consensus 387 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 465 (600)
...+-.+- .+...+...+..+..+|.-++-.++++.+.+.+ +|++.....+..+|.+.|+..++.+++.++.+. |+
T Consensus 76 v~C~~~~n-~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe~-G~ 151 (161)
T d1wy6a1 76 VECGVINN-TLNEHVNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKK-GE 151 (161)
T ss_dssp HHHHHHTT-CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TC
T ss_pred HHHHHHhc-chHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHH-hH
Confidence 22222221 222334555667777888888888888766643 677777777788888888888888888887765 43
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.25 E-value=0.2 Score=36.25 Aligned_cols=66 Identities=3% Similarity=-0.196 Sum_probs=49.5
Q ss_pred CCHHHHHHHHHHHhhhh---CCHHHHHHHHHHHHhhCCCCC-CcHHHHhHHHHhhCCcHHHHHHHHHHhhc
Q 007519 499 PDHRIWGALLGACGFCE---GNAEIAEHAAKRLLELDPLNA-PAHVVLCNIYAASGRHVEEHKLRMDMGLK 565 (600)
Q Consensus 499 p~~~~~~~l~~~~~~~~---g~~~~a~~~~~~~~~~~p~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 565 (600)
|...+--....++. ++ .+.++|+.+++++++.+|.+. ..+..|+-+|.+.|++++|.+.++.+.+.
T Consensus 33 ~s~qt~F~YAw~Lv-~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~i 102 (124)
T d2pqrb1 33 ATIQSRFNYAWGLI-KSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 102 (124)
T ss_dssp SCHHHHHHHHHHHH-HSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHH-cCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 44444334444444 33 467899999999999998665 67889999999999999999977766554
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=88.12 E-value=1.6 Score=29.46 Aligned_cols=63 Identities=19% Similarity=0.193 Sum_probs=48.1
Q ss_pred ChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCCCcchHHHHHH
Q 007519 413 LANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMIN 477 (600)
Q Consensus 413 ~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 477 (600)
+.-++.+-++.+....+.|++....+.+++|-+.+++..|.++++-++.+ ..++...|..++.
T Consensus 21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K--~~~~k~~y~yilq 83 (105)
T d1v54e_ 21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK--AGPHKEIYPYVIQ 83 (105)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--hcCcHHHHHHHHH
Confidence 45567777777777788899999999999999999999999999888765 3344556665543
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=84.38 E-value=4.3 Score=27.34 Aligned_cols=63 Identities=10% Similarity=-0.026 Sum_probs=44.2
Q ss_pred ChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhcccchhhhHHHHHHHhhhcCCCchhHHHHHHH
Q 007519 312 LFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLIS 375 (600)
Q Consensus 312 ~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 375 (600)
+.=++.+-++.+....+.|++....+.+++|.+.+++..|.++++-+... ..++..+|..+++
T Consensus 21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K-~~~~k~~y~yilq 83 (105)
T d1v54e_ 21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 83 (105)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCcHHHHHHHHH
Confidence 34456677777777788888888888888888888888888888865532 2223445555543
|