Citrus Sinensis ID: 007573

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------
Protein Sequence
MLCNSYFHQTYLKRILFPPILRILSTPDSCGNFTPHSSNCLIRLFSTQYVFVNNAKISALSRAGKISAARQLFDQMTTKDVITWNAIITGYWQNGFLQESKNLFQSMPVKNIVSWNCMIAGCIDNDRIDDAFDYFQAMPERNTATYNAMISGFLKHGRLEEATRLFEQMPRRNVISYTAMLDGFMKKGEVDKARALSDYMSFKNVVSWTVMITGYVKNERFCEARELFYRMPDYDKNVFVVTAMITGFCKVGMLENARLLFERIQPKDCVSFNAMIAGYAQNGVAEEALRLFSGMIKMDMQPDDATLVSVFTACSALQLLNEGRQSHVLVIRNGFEANVSVCNAVITMYSRCGGILDSELAFRQIHSPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMPFEADTGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRVRLLMKEQGVTKQCAYSWIEIGNKVHYFLGGDMSHPCIDKIHLELKRASVQMKSVDDFVEIATSWSSFD
Secondary Structure (PSIPRED)
cccccccHHHHcccccccHHHHHHccccccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccHHHHHHHHcccccccccHHHHHHHHHHHccccHHHHHHHccccccccccHHHHHHHHHccccHHHHHHHHccccccccEEHHHHHHHHHHcccHHHHHHHHcccccccHHHHHHHHHHHHHcccHHHHHHHHHHccccccccHHHHHHHHHccccHHHHHHHcHHcccccccHHHHHHHHHHHHHcccHHHHHHHHcccccccEEcHHHHHHHHHcccccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHccccHHHHHHHHccccccccccHHHHHHHHHHcccHHHHHHHHHHHHHcccccccHHHHHHHHHHccccHHHHHHHHHHHcHHHcccccccccHHHHHHHHcccccHHHHHHHHHcccccccHHHHHHHHHHHHHccccHHHHHHHHHHHcccccccccHHHHHHHHHHccccHHHHHHHHHHHHccccccccEEEEEEccEEEEEEEcccccccHHHHHHHHHHHHHHHHHccccccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHccccccEHHHHHHHHHHHcccHHHHHHHHHHccccccccHHHHHHHHHHcccHHHHHHHHHHHcccccEHHHHHHHHHHHcccHHHHHHHHHHccccccEHHHHHHHHHHHcccHHHHHHHHHHHcccccHHHHHHHHHHHHcccHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHcccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHcccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccccEEEEEEccEEEEEEEcccccccHHHHHHHHHHHHHHHHHccccccccEEEEccc
Coil and Loop (DISEMBL)
mlcnsyfhqtylkrilfppilrilstpdscgnftphssnCLIRLFSTQYVFVNNAKISALSRAGKISAARQLFDQMTTKDVITWNAIITGYWQNGFLQESKNLfqsmpvknivswncmiagcidndridDAFDYfqamperntATYNAMISGFLKHGRLEEATRLFEQMPRRNVISYTAMLDGFMKKGEVDKARALSDYMSFKNVVSWTVMITGYVKNERFCEARELfyrmpdydknVFVVTAMITGFCKVGMLENARLLFeriqpkdcvsFNAMIAGYAQNGVAEEALRLFSGMikmdmqpddaTLVSVFTACSALQLLNEGRQSHVLVIRNGFEANVSVCNAVITMYSrcggildselafrqihspnlvSWNTIIAAFAQHGHYEKALIFFSqmglngfdpdgITFLSLLSACghagkvneSMDLFELMVKVYgiipssehYTCLVDILSRAGQLEKAWQItqgmpfeadtgVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRVRLLMKEQGVTKQCAYSWIEIGNKVHyflggdmshpciDKIHLELKRASVQMKSVDDFVEIATSWSSFD
Flexible Loop (DISEMBL)
MLCNSYFHQTYLKRILFPPILRILSTPDSCGNFTPHSSNCLIRLFSTQYVFVNNAKISALSRAGKISAARQLFDQMTTKDVITWNAIITGYWQNGFLQESKNLFQSMPVKNIVSWNCMIAGCIDNDRIDDAFDYFQAMPERNTATYNAMISGFLKHGRLEEATRLFEQMPRRNVISYTAMLDGFMKKGEVDKARALSDYMSFKNVVSWTVMITGYVKNERFCEARELFYRMPDYDKNVFVVTAMITGFCKVGMLENARLLFERIQPKDCVSFNAMIAGYAQNGVAEEALRLFSGMIKMDMQPDDATLVSVFTACSALQLLNEGRQSHVLVIRNGFEANVSVCNAVITMYSRCGGILDSELAFRQIHSPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMPFEADTGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRVRLLMKEQGVTKQCAYSWIEIGNKVHYFLGGDMSHPCIDKIHLELKRASVQMKSVDDFVEIATSWSSFD
Low Complexity Region (SEG)
MLCNSYFHQTYLKRILFPPILRILSTPDSCGNFTPHSSNCLIRLFSTQYVFVNNAKISALSRAGKISAARQLFDQMTTKDVITWNAIITGYWQNGFLQESKNLFQSMPVKNIVSWNCMIAGCIDNDRIDDAFDYFQAMPERNTATYNAMISGFLKHGRLEEATRLFEQMPRRNVISYTAMLDGFMKKGEVDKARALSDYMSFKNVVSWTVMITGYVKNERFCEARELFYRMPDYDKNVFVVTAMITGFCKVGMLENARLLFERIQPKDCVSFNAMIAGYAQNGVAEEALRLFSGMIKMDMQPDDATLVSVFTACSALQLLNEGRQSHVLVIRNGFEANVSVCNAVITMYSRCGGILDSELAFRQIHSPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMPFEADTGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRVRLLMKEQGVTKQCAYSWIEIGNKVHYFLGGDMSHPCIDKIHLELKRASVQMKSVDDFVEIATSWSSFD
Disordered region (IsUnstruct)
**CNSYFHQTYLKRILFPPILRILSTPDSCGNFTPHSSNCLIRLFSTQYVFVNNAKISALSRAGKISAARQLFDQMTTKDVITWNAIITGYWQNGFLQESKNLFQSMPVKNIVSWNCMIAGCIDNDRIDDAFDYFQAMPERNTATYNAMISGFLKHGRLEEATRLFEQMPRRNVISYTAMLDGFMKKGEVDKARALSDYMSFKNVVSWTVMITGYVKNERFCEARELFYRMPDYDKNVFVVTAMITGFCKVGMLENARLLFERIQPKDCVSFNAMIAGYAQNGVAEEALRLFSGMIKMDMQPDDATLVSVFTACSALQLLNEGRQSHVLVIRNGFEANVSVCNAVITMYSRCGGILDSELAFRQIHSPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMPFEADTGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRVRLLMKEQGVTKQCAYSWIEIGNKVHYFLGGDMSHPCIDKIHLELKRASVQMKSVDDFVEIAT******
Disordered Region (DISOPRED)
*******HQTYLKRILFPPILRILSTPDSCGNFTPHSSNCLIRLFSTQYVFVNNAKISALSRAGKISAARQLFDQMTTKDVITWNAIITGYWQNGFLQESKNLFQSMPVKNIVSWNCMIAGCIDNDRIDDAFDYFQAMPERNTATYNAMISGFLKHGRLEEATRLFEQMPRRNVISYTAMLDGFMKKGEVDKARALSDYMSFKNVVSWTVMITGYVKNERFCEARELFYRMPDYDKNVFVVTAMITGFCKVGMLENARLLFERIQPKDCVSFNAMIAGYAQNGVAEEALRLFSGMIKMDMQPDDATLVSVFTACSALQLLNEGRQSHVLVIRNGFEANVSVCNAVITMYSRCGGILDSELAFRQIHSPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMPFEADTGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRVRLLMKEQGVTKQCAYSWIEIGNKVHYFLGGDMSHPCIDKIHLELKRASVQMKSVDDFVEIATSWSSFD
Disordered Region (DISEMBL)
MLCNSYFHQTYLKRILFPPILRILSTPDSCGNFTPHSSNCLIRLFSTQYVFVNNAKISALSRAGKISAARQLFDQMTTKDVITWNAIITGYWQNGFLQESKNLFQSMPVKNIVSWNCMIAGCIDNDRIDDAFDYFQAMPERNTATYNAMISGFLKHGRLEEATRLFEQMPRRNVISYTAMLDGFMKKGEVDKARALSDYMSFKNVVSWTVMITGYVKNERFCEARELFYRMPDYDKNVFVVTAMITGFCKVGMLENARLLFERIQPKDCVSFNAMIAGYAQNGVAEEALRLFSGMIKMDMQPDDATLVSVFTACSALQLLNEGRQSHVLVIRNGFEANVSVCNAVITMYSRCGGILDSELAFRQIHSPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMPFEADTGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRVRLLMKEQGVTKQCAYSWIEIGNKVHYFLGGDMSHPCIDKIHLELKRASVQMKSVDDFVEIATSWSSFD
Disordered Region (DISPRO)
MLCNSYFHQTYLKRILFPPILRILSTPDSCGNFTPHSSNCLIRLFSTQYVFVNNAKISALSRAGKISAARQLFDQMTTKDVITWNAIITGYWQNGFLQESKNLFQSMPVKNIVSWNCMIAGCIDNDRIDDAFDYFQAMPERNTATYNAMISGFLKHGRLEEATRLFEQMPRRNVISYTAMLDGFMKKGEVDKARALSDYMSFKNVVSWTVMITGYVKNERFCEARELFYRMPDYDKNVFVVTAMITGFCKVGMLENARLLFERIQPKDCVSFNAMIAGYAQNGVAEEALRLFSGMIKMDMQPDDATLVSVFTACSALQLLNEGRQSHVLVIRNGFEANVSVCNAVITMYSRCGGILDSELAFRQIHSPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMPFEADTGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRVRLLMKEQGVTKQCAYSWIEIGNKVHYFLGGDMSHPCIDKIHLELKRASVQMKSVDDFVEIATSWSSFD
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLCNSYFHQTYLKRILFPPILRILSTPDSCGNFTPHSSNCLIRLFSTQYVFVNNAKISALSRAGKISAARQLFDQMTTKDVITWNAIITGYWQNGFLQESKNLFQSMPVKNIVSWNCMIAGCIDNDRIDDAFDYFQAMPERNTATYNAMISGFLKHGRLEEATRLFEQMPRRNVISYTAMLDGFMKKGEVDKARALSDYMSFKNVVSWTVMITGYVKNERFCEARELFYRMPDYDKNVFVVTAMITGFCKVGMLENARLLFERIQPKDCVSFNAMIAGYAQNGVAEEALRLFSGMIKMDMQPDDATLVSVFTACSALQLLNEGRQSHVLVIRNGFEANVSVCNAVITMYSRCGGILDSELAFRQIHSPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMPFEADTGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRVRLLMKEQGVTKQCAYSWIEIGNKVHYFLGGDMSHPCIDKIHLELKRASVQMKSVDDFVEIATSWSSFD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	597	2.2.26 [Sep-21-2011]
Q9SY02	781	Pentatricopeptide repeat-	yes	no	0.881	0.673	0.399	1e-121
Q56XI1	705	Pentatricopeptide repeat-	no	no	0.891	0.754	0.386	1e-115
Q9FXB9	704	Pentatricopeptide repeat-	no	no	0.852	0.723	0.371	1e-114
O64766	627	Pentatricopeptide repeat-	no	no	0.891	0.848	0.388	1e-113
Q9M4P3	656	Pentatricopeptide repeat-	no	no	0.817	0.743	0.398	1e-105
Q9SIT7	697	Pentatricopeptide repeat-	no	no	0.911	0.780	0.341	1e-105
Q9FHF9	697	Pentatricopeptide repeat-	no	no	0.869	0.744	0.348	2e-97
O04590	656	Pentatricopeptide repeat-	no	no	0.824	0.75	0.362	2e-95
Q9ZUW3	868	Pentatricopeptide repeat-	no	no	0.882	0.607	0.349	1e-94
Q9SN39	871	Pentatricopeptide repeat-	no	no	0.874	0.599	0.337	2e-93

>sp|Q9SY02|PP301_ARATH Pentatricopeptide repeat-containing protein At4g02750 OS=Arabidopsis thaliana GN=PCMP-H24 PE=3 SV=1

 Score =  436 bits (1120), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 211/528 (39%), Positives = 338/528 (64%), Gaps = 2/528 (0%)

Query: 54  NAKISALSRAGKISAARQLFDQMTTKDVITWNAIITGYWQNGFLQESKNLFQSMPVKNIV 113
           N  +S  ++ G +  AR +FD+M  K+ ++WNA+++ Y QN  ++E+  LF+S     +V
Sbjct: 161 NTMLSGYAQNGCVDDARSVFDRMPEKNDVSWNALLSAYVQNSKMEEACMLFKSRENWALV 220

Query: 114 SWNCMIAGCIDNDRIDDAFDYFQAMPERNTATYNAMISGFLKHGRLEEATRLFEQMPRRN 173
           SWNC++ G +   +I +A  +F +M  R+  ++N +I+G+ + G+++EA +LF++ P ++
Sbjct: 221 SWNCLLGGFVKKKKIVEARQFFDSMNVRDVVSWNTIITGYAQSGKIDEARQLFDESPVQD 280

Query: 174 VISYTAMLDGFMKKGEVDKARALSDYMSFKNVVSWTVMITGYVKNERFCEARELFYRMPD 233
           V ++TAM+ G+++   V++AR L D M  +N VSW  M+ GYV+ ER   A+ELF  MP 
Sbjct: 281 VFTWTAMVSGYIQNRMVEEARELFDKMPERNEVSWNAMLAGYVQGERMEMAKELFDVMPC 340

Query: 234 YDKNVFVVTAMITGFCKVGMLENARLLFERIQPKDCVSFNAMIAGYAQNGVAEEALRLFS 293
             +NV     MITG+ + G +  A+ LF+++  +D VS+ AMIAGY+Q+G + EALRLF 
Sbjct: 341 --RNVSTWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSFEALRLFV 398

Query: 294 GMIKMDMQPDDATLVSVFTACSALQLLNEGRQSHVLVIRNGFEANVSVCNAVITMYSRCG 353
            M +   + + ++  S  + C+ +  L  G+Q H  +++ G+E    V NA++ MY +CG
Sbjct: 399 QMEREGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCG 458

Query: 354 GILDSELAFRQIHSPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLS 413
            I ++   F+++   ++VSWNT+IA +++HG  E AL FF  M   G  PD  T +++LS
Sbjct: 459 SIEEANDLFKEMAGKDIVSWNTMIAGYSRHGFGEVALRFFESMKREGLKPDDATMVAVLS 518

Query: 414 ACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMPFEADT 473
           AC H G V++    F  M + YG++P+S+HY C+VD+L RAG LE A  + + MPFE D 
Sbjct: 519 ACSHTGLVDKGRQYFYTMTQDYGVMPNSQHYACMVDLLGRAGLLEDAHNLMKNMPFEPDA 578

Query: 474 GVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRVRLLM 533
            +WG+LL A  ++ N EL E AA K+  ++P+NS +YV+LSNLYA++G W DV ++R+ M
Sbjct: 579 AIWGTLLGASRVHGNTELAETAADKIFAMEPENSGMYVLLSNLYASSGRWGDVGKLRVRM 638

Query: 534 KEQGVTKQCAYSWIEIGNKVHYFLGGDMSHPCIDKIHLELKRASVQMK 581
           +++GV K   YSWIEI NK H F  GD  HP  D+I   L+   ++MK
Sbjct: 639 RDKGVKKVPGYSWIEIQNKTHTFSVGDEFHPEKDEIFAFLEELDLRMK 686

Arabidopsis thaliana (taxid: 3702)

>sp|Q56XI1|PPR25_ARATH Pentatricopeptide repeat-containing protein At1g09410 OS=Arabidopsis thaliana GN=PCMP-H18 PE=2 SV=2

 Score =  417 bits (1073), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 207/536 (38%), Positives = 325/536 (60%), Gaps = 4/536 (0%)

Query: 31  GNFTPHSSNCLIRLFSTQYVFVNNAKISALSRAGKISAARQLFDQMTTKDVITWNAIITG 90
            N  P  +  L      + +   N  +S   + G+I  AR++FD M  ++V++W A++ G
Sbjct: 60  ANLMPRDARKLFDEMPDRNIISWNGLVSGYMKNGEIDEARKVFDLMPERNVVSWTALVKG 119

Query: 91  YWQNGFLQESKNLFQSMPVKNIVSWNCMIAGCIDNDRIDDAFDYFQAMPERNTATYNAMI 150
           Y  NG +  +++LF  MP KN VSW  M+ G + + RIDDA   ++ +P+++     +MI
Sbjct: 120 YVHNGKVDVAESLFWKMPEKNKVSWTVMLIGFLQDGRIDDACKLYEMIPDKDNIARTSMI 179

Query: 151 SGFLKHGRLEEATRLFEQMPRRNVISYTAMLDGFMKKGEVDKARALSDYMSFKNVVSWTV 210
            G  K GR++EA  +F++M  R+VI++T M+ G+ +   VD AR + D M  K  VSWT 
Sbjct: 180 HGLCKEGRVDEAREIFDEMSERSVITWTTMVTGYGQNNRVDDARKIFDVMPEKTEVSWTS 239

Query: 211 MITGYVKNERFCEARELFYRMPDYDKNVFVVTAMITGFCKVGMLENARLLFERIQPKDCV 270
           M+ GYV+N R  +A ELF  MP   K V    AMI+G  + G +  AR +F+ ++ ++  
Sbjct: 240 MLMGYVQNGRIEDAEELFEVMPV--KPVIACNAMISGLGQKGEIAKARRVFDSMKERNDA 297

Query: 271 SFNAMIAGYAQNGVAEEALRLFSGMIKMDMQPDDATLVSVFTACSALQLLNEGRQSHVLV 330
           S+  +I  + +NG   EAL LF  M K  ++P   TL+S+ + C++L  L+ G+Q H  +
Sbjct: 298 SWQTVIKIHERNGFELEALDLFILMQKQGVRPTFPTLISILSVCASLASLHHGKQVHAQL 357

Query: 331 IRNGFEANVSVCNAVITMYSRCGGILDSELAFRQIHSPNLVSWNTIIAAFAQHGHYEKAL 390
           +R  F+ +V V + ++TMY +CG ++ S+L F +  S +++ WN+II+ +A HG  E+AL
Sbjct: 358 VRCQFDVDVYVASVLMTMYIKCGELVKSKLIFDRFPSKDIIMWNSIISGYASHGLGEEAL 417

Query: 391 IFFSQMGLNG-FDPDGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVD 449
             F +M L+G   P+ +TF++ LSAC +AG V E + ++E M  V+G+ P + HY C+VD
Sbjct: 418 KVFCEMPLSGSTKPNEVTFVATLSACSYAGMVEEGLKIYESMESVFGVKPITAHYACMVD 477

Query: 450 ILSRAGQLEKAWQITQGMPFEADTGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAV 509
           +L RAG+  +A ++   M  E D  VWGSLL AC  +  +++ E  AKK+ E++P+NS  
Sbjct: 478 MLGRAGRFNEAMEMIDSMTVEPDAAVWGSLLGACRTHSQLDVAEFCAKKLIEIEPENSGT 537

Query: 510 YVMLSNLYAAAGMWRDVTRVRLLMKEQGVTKQCAYSWIEIGNKVHYFL-GGDMSHP 564
           Y++LSN+YA+ G W DV  +R LMK + V K    SW E+ NKVH F  GG  SHP
Sbjct: 538 YILLSNMYASQGRWADVAELRKLMKTRLVRKSPGCSWTEVENKVHAFTRGGINSHP 593

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FXB9|PPR84_ARATH Pentatricopeptide repeat-containing protein At1g56690, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H69 PE=2 SV=1

 Score =  413 bits (1061), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 212/570 (37%), Positives = 327/570 (57%), Gaps = 61/570 (10%)

Query: 56  KISALSRAGKISAARQLFDQMTTKDVITWNAIITGYWQNGFLQESKNLFQSMPVKNIVSW 115
           +IS LSR GKI+ AR+ FD +  K + +WN+I++GY+ NG  +E++ LF  M  +N+VSW
Sbjct: 23  EISRLSRIGKINEARKFFDSLQFKAIGSWNSIVSGYFSNGLPKEARQLFDEMSERNVVSW 82

Query: 116 NCMIAGCIDNDRIDDAFDYFQAMPERNTATYNAMISGFLKHGRLEEATRLFEQMPRRNVI 175
           N +++G I N  I +A + F+ MPERN  ++ AM+ G+++ G + EA  LF +MP RN +
Sbjct: 83  NGLVSGYIKNRMIVEARNVFELMPERNVVSWTAMVKGYMQEGMVGEAESLFWRMPERNEV 142

Query: 176 SYTAMLDGFMKKGEVDKARALSDYMSFK-------------------------------N 204
           S+T M  G +  G +DKAR L D M  K                               N
Sbjct: 143 SWTVMFGGLIDDGRIDKARKLYDMMPVKDVVASTNMIGGLCREGRVDEARLIFDEMRERN 202

Query: 205 VVSWTVMITGYVKNERFCEARELFYRMPDYD----------------------------- 235
           VV+WT MITGY +N R   AR+LF  MP+                               
Sbjct: 203 VVTWTTMITGYRQNNRVDVARKLFEVMPEKTEVSWTSMLLGYTLSGRIEDAEEFFEVMPM 262

Query: 236 KNVFVVTAMITGFCKVGMLENARLLFERIQPKDCVSFNAMIAGYAQNGVAEEALRLFSGM 295
           K V    AMI GF +VG +  AR +F+ ++ +D  ++  MI  Y + G   EAL LF+ M
Sbjct: 263 KPVIACNAMIVGFGEVGEISKARRVFDLMEDRDNATWRGMIKAYERKGFELEALDLFAQM 322

Query: 296 IKMDMQPDDATLVSVFTACSALQLLNEGRQSHVLVIRNGFEANVSVCNAVITMYSRCGGI 355
            K  ++P   +L+S+ + C+ L  L  GRQ H  ++R  F+ +V V + ++TMY +CG +
Sbjct: 323 QKQGVRPSFPSLISILSVCATLASLQYGRQVHAHLVRCQFDDDVYVASVLMTMYVKCGEL 382

Query: 356 LDSELAFRQIHSPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSAC 415
           + ++L F +  S +++ WN+II+ +A HG  E+AL  F +M  +G  P+ +T +++L+AC
Sbjct: 383 VKAKLVFDRFSSKDIIMWNSIISGYASHGLGEEALKIFHEMPSSGTMPNKVTLIAILTAC 442

Query: 416 GHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMPFEADTGV 475
            +AGK+ E +++FE M   + + P+ EHY+C VD+L RAGQ++KA ++ + M  + D  V
Sbjct: 443 SYAGKLEEGLEIFESMESKFCVTPTVEHYSCTVDMLGRAGQVDKAMELIESMTIKPDATV 502

Query: 476 WGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRVRLLMKE 535
           WG+LL AC  +  ++L E+AAKK+ E +P N+  YV+LS++ A+   W DV  VR  M+ 
Sbjct: 503 WGALLGACKTHSRLDLAEVAAKKLFENEPDNAGTYVLLSSINASRSKWGDVAVVRKNMRT 562

Query: 536 QGVTKQCAYSWIEIGNKVHYFL-GGDMSHP 564
             V+K    SWIE+G KVH F  GG  +HP
Sbjct: 563 NNVSKFPGCSWIEVGKKVHMFTRGGIKNHP 592

Arabidopsis thaliana (taxid: 3702)

>sp|O64766|PP185_ARATH Pentatricopeptide repeat-containing protein At2g35030, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E15 PE=2 SV=1

 Score =  409 bits (1051), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 210/541 (38%), Positives = 333/541 (61%), Gaps = 9/541 (1%)

Query: 57  ISALSRAGKISAARQLFDQMTT-KDVITWNAIITGYWQNGFLQESKNLFQSMPVKNIVSW 115
           I+   + G +  AR+LFD++ + K+V+TW A+++GY ++  L  ++ LFQ MP +N+VSW
Sbjct: 84  ITGYIKLGDMREARELFDRVDSRKNVVTWTAMVSGYLRSKQLSIAEMLFQEMPERNVVSW 143

Query: 116 NCMIAGCIDNDRIDDAFDYFQAMPERNTATYNAMISGFLKHGRLEEATRLFEQMPRRNVI 175
           N MI G   + RID A + F  MPERN  ++N+M+   ++ GR++EA  LFE+MPRR+V+
Sbjct: 144 NTMIDGYAQSGRIDKALELFDEMPERNIVSWNSMVKALVQRGRIDEAMNLFERMPRRDVV 203

Query: 176 SYTAMLDGFMKKGEVDKARALSDYMSFKNVVSWTVMITGYVKNERFCEARELFYRMPDYD 235
           S+TAM+DG  K G+VD+AR L D M  +N++SW  MITGY +N R  EA +LF  MP+ D
Sbjct: 204 SWTAMVDGLAKNGKVDEARRLFDCMPERNIISWNAMITGYAQNNRIDEADQLFQVMPERD 263

Query: 236 KNVFVVTAMITGFCKVGMLENARLLFERIQPKDCVSFNAMIAGYAQNGVAEEALRLFSGM 295
              +    MITGF +   +  A  LF+R+  K+ +S+  MI GY +N   EEAL +FS M
Sbjct: 264 FASW--NTMITGFIRNREMNKACGLFDRMPEKNVISWTTMITGYVENKENEEALNVFSKM 321

Query: 296 IK-MDMQPDDATLVSVFTACSALQLLNEGRQSHVLVIRNGFEANVSVCNAVITMYSRCGG 354
           ++   ++P+  T VS+ +ACS L  L EG+Q H L+ ++  + N  V +A++ MYS+ G 
Sbjct: 322 LRDGSVKPNVGTYVSILSACSDLAGLVEGQQIHQLISKSVHQKNEIVTSALLNMYSKSGE 381

Query: 355 ILDSELAFRQ--IHSPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLL 412
           ++ +   F    +   +L+SWN++IA +A HGH ++A+  ++QM  +GF P  +T+L+LL
Sbjct: 382 LIAARKMFDNGLVCQRDLISWNSMIAVYAHHGHGKEAIEMYNQMRKHGFKPSAVTYLNLL 441

Query: 413 SACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMPFEAD 472
            AC HAG V + M+ F+ +V+   +    EHYTCLVD+  RAG+L+              
Sbjct: 442 FACSHAGLVEKGMEFFKDLVRDESLPLREEHYTCLVDLCGRAGRLKDVTNFINCDDARLS 501

Query: 473 TGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRVRLL 532
              +G++L+AC ++  V + +   KK+ E    ++  YV++SN+YAA G   +   +R+ 
Sbjct: 502 RSFYGAILSACNVHNEVSIAKEVVKKVLETGSDDAGTYVLMSNIYAANGKREEAAEMRMK 561

Query: 533 MKEQGVTKQCAYSWIEIGNKVHYFLGGDMSHP---CIDKIHLELKRASVQMKSVDDFVEI 589
           MKE+G+ KQ   SW+++G + H F+ GD SHP    +D I  +L+    + K+V    E 
Sbjct: 562 MKEKGLKKQPGCSWVKVGKQNHLFVVGDKSHPQFEALDSILSDLRNKMRKNKNVTSDAEE 621

Query: 590 A 590
           A
Sbjct: 622 A 622

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M4P3|PP316_ARATH Pentatricopeptide repeat-containing protein At4g16835, mitochondrial OS=Arabidopsis thaliana GN=DYW10 PE=2 SV=3

 Score =  382 bits (980), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 196/492 (39%), Positives = 299/492 (60%), Gaps = 4/492 (0%)

Query: 81  VITWNAIITGYWQNGFLQESKNLFQSMPVKNIVSWNCMIAG-CIDNDRIDDAFDYFQAMP 139
           +   N II    ++G +  +  +F  M  KN ++WN ++ G   D  R+ +A   F  +P
Sbjct: 61  IFPLNKIIARCVRSGDIDGALRVFHGMRAKNTITWNSLLIGISKDPSRMMEAHQLFDEIP 120

Query: 140 ERNTATYNAMISGFLKHGRLEEATRLFEQMPRRNVISYTAMLDGFMKKGEVDKARALSDY 199
           E +T +YN M+S ++++   E+A   F++MP ++  S+  M+ G+ ++GE++KAR L   
Sbjct: 121 EPDTFSYNIMLSCYVRNVNFEKAQSFFDRMPFKDAASWNTMITGYARRGEMEKARELFYS 180

Query: 200 MSFKNVVSWTVMITGYVKNERFCEARELFYRMPDYDKNVFVVTAMITGFCKVGMLENARL 259
           M  KN VSW  MI+GY++     +A   F   P   + V   TAMITG+ K   +E A  
Sbjct: 181 MMEKNEVSWNAMISGYIECGDLEKASHFFKVAPV--RGVVAWTAMITGYMKAKKVELAEA 238

Query: 260 LFERIQ-PKDCVSFNAMIAGYAQNGVAEEALRLFSGMIKMDMQPDDATLVSVFTACSALQ 318
           +F+ +   K+ V++NAMI+GY +N   E+ L+LF  M++  ++P+ + L S    CS L 
Sbjct: 239 MFKDMTVNKNLVTWNAMISGYVENSRPEDGLKLFRAMLEEGIRPNSSGLSSALLGCSELS 298

Query: 319 LLNEGRQSHVLVIRNGFEANVSVCNAVITMYSRCGGILDSELAFRQIHSPNLVSWNTIIA 378
            L  GRQ H +V ++    +V+   ++I+MY +CG + D+   F  +   ++V+WN +I+
Sbjct: 299 ALQLGRQIHQIVSKSTLCNDVTALTSLISMYCKCGELGDAWKLFEVMKKKDVVAWNAMIS 358

Query: 379 AFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMVKVYGII 438
            +AQHG+ +KAL  F +M  N   PD ITF+++L AC HAG VN  M  FE MV+ Y + 
Sbjct: 359 GYAQHGNADKALCLFREMIDNKIRPDWITFVAVLLACNHAGLVNIGMAYFESMVRDYKVE 418

Query: 439 PSSEHYTCLVDILSRAGQLEKAWQITQGMPFEADTGVWGSLLAACVINLNVELGELAAKK 498
           P  +HYTC+VD+L RAG+LE+A ++ + MPF     V+G+LL AC ++ NVEL E AA+K
Sbjct: 419 PQPDHYTCMVDLLGRAGKLEEALKLIRSMPFRPHAAVFGTLLGACRVHKNVELAEFAAEK 478

Query: 499 MRELDPQNSAVYVMLSNLYAAAGMWRDVTRVRLLMKEQGVTKQCAYSWIEIGNKVHYFLG 558
           + +L+ QN+A YV L+N+YA+   W DV RVR  MKE  V K   YSWIEI NKVH+F  
Sbjct: 479 LLQLNSQNAAGYVQLANIYASKNRWEDVARVRKRMKESNVVKVPGYSWIEIRNKVHHFRS 538

Query: 559 GDMSHPCIDKIH 570
            D  HP +D IH
Sbjct: 539 SDRIHPELDSIH 550

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SIT7|PP151_ARATH Pentatricopeptide repeat-containing protein At2g13600 OS=Arabidopsis thaliana GN=PCMP-E76 PE=3 SV=1

 Score =  382 bits (980), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 216/632 (34%), Positives = 340/632 (53%), Gaps = 88/632 (13%)

Query: 45  FSTQYVFVNNAKISALSRAGKISAARQLFDQMTTKDVITWNAIITGYWQNGFLQESKNLF 104
           FS + +F+ N  I A S+ G +   RQ+FD+M  +++ TWN+++TG  + GFL E+ +LF
Sbjct: 51  FSNE-IFIQNRLIDAYSKCGSLEDGRQVFDKMPQRNIYTWNSVVTGLTKLGFLDEADSLF 109

Query: 105 QSMPVKNIVSWNCMIAGCIDNDRIDDAFDYFQAMPER----NTATY-------------- 146
           +SMP ++  +WN M++G   +DR ++A  YF  M +     N  ++              
Sbjct: 110 RSMPERDQCTWNSMVSGFAQHDRCEEALCYFAMMHKEGFVLNEYSFASVLSACSGLNDMN 169

Query: 147 ---------------------NAMISGFLKHGRLEEATRLFEQMPRRNVISYTAMLDGFM 185
                                +A++  + K G + +A R+F++M  RNV+S+ +++  F 
Sbjct: 170 KGVQVHSLIAKSPFLSDVYIGSALVDMYSKCGNVNDAQRVFDEMGDRNVVSWNSLITCFE 229

Query: 186 KKGEVDKA----------RALSDYMSFKNVVSWTVMITG--------------------- 214
           + G   +A          R   D ++  +V+S    ++                      
Sbjct: 230 QNGPAVEALDVFQMMLESRVEPDEVTLASVISACASLSAIKVGQEVHGRVVKNDKLRNDI 289

Query: 215 ---------YVKNERFCEARELFYRMPDYDKNVFVVTAMITGFCKVGMLENARLLFERIQ 265
                    Y K  R  EAR +F  MP   +NV   T+MI+G+      + ARL+F ++ 
Sbjct: 290 ILSNAFVDMYAKCSRIKEARFIFDSMPI--RNVIAETSMISGYAMAASTKAARLMFTKMA 347

Query: 266 PKDCVSFNAMIAGYAQNGVAEEALRLFSGMIKMDMQPDDATLVSVFTACSALQLLNEGRQ 325
            ++ VS+NA+IAGY QNG  EEAL LF  + +  + P   +  ++  AC+ L  L+ G Q
Sbjct: 348 ERNVVSWNALIAGYTQNGENEEALSLFCLLKRESVCPTHYSFANILKACADLAELHLGMQ 407

Query: 326 SHVLVIRNGF------EANVSVCNAVITMYSRCGGILDSELAFRQIHSPNLVSWNTIIAA 379
           +HV V+++GF      E ++ V N++I MY +CG + +  L FR++   + VSWN +I  
Sbjct: 408 AHVHVLKHGFKFQSGEEDDIFVGNSLIDMYVKCGCVEEGYLVFRKMMERDCVSWNAMIIG 467

Query: 380 FAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIP 439
           FAQ+G+  +AL  F +M  +G  PD IT + +LSACGHAG V E    F  M + +G+ P
Sbjct: 468 FAQNGYGNEALELFREMLESGEKPDHITMIGVLSACGHAGFVEEGRHYFSSMTRDFGVAP 527

Query: 440 SSEHYTCLVDILSRAGQLEKAWQITQGMPFEADTGVWGSLLAACVINLNVELGELAAKKM 499
             +HYTC+VD+L RAG LE+A  + + MP + D+ +WGSLLAAC ++ N+ LG+  A+K+
Sbjct: 528 LRDHYTCMVDLLGRAGFLEEAKSMIEEMPMQPDSVIWGSLLAACKVHRNITLGKYVAEKL 587

Query: 500 RELDPQNSAVYVMLSNLYAAAGMWRDVTRVRLLMKEQGVTKQCAYSWIEIGNKVHYFLGG 559
            E++P NS  YV+LSN+YA  G W DV  VR  M+++GVTKQ   SWI+I    H F+  
Sbjct: 588 LEVEPSNSGPYVLLSNMYAELGKWEDVMNVRKSMRKEGVTKQPGCSWIKIQGHDHVFMVK 647

Query: 560 DMSHPCIDKIHLELKRASVQMKSVDDFVEIAT 591
           D SHP   +IH  L     +M+   D  EI +
Sbjct: 648 DKSHPRKKQIHSLLDILIAEMRPEQDHTEIGS 679

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FHF9|PP419_ARATH Pentatricopeptide repeat-containing protein At5g46460, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H49 PE=2 SV=1

 Score =  357 bits (915), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 196/562 (34%), Positives = 318/562 (56%), Gaps = 43/562 (7%)

Query: 43  RLFSTQYVFVNNAKI---SALSRAGKISAARQLFDQMTTKDVITWNAIITGYWQNGFLQE 99
           R FS    F N   +     LSR  +I  AR++F+Q+ +  V  +  +ITGY ++  L +
Sbjct: 27  RSFSVTVEFQNREVLICNHLLSR--RIDEAREVFNQVPSPHVSLYTKMITGYTRSNRLVD 84

Query: 100 SKNLFQSMPVKNIVSWNCMIAGCIDNDRIDDAFDYFQAMPERNTATYNAMISGFLKHGRL 159
           + NLF  MPV+++VSWN MI+GC++   ++ A   F  MPER+  ++ AM++G  + G++
Sbjct: 85  ALNLFDEMPVRDVVSWNSMISGCVECGDMNTAVKLFDEMPERSVVSWTAMVNGCFRSGKV 144

Query: 160 EEATRLFEQMPRRNVISYTAMLDGFMKKGEVDKARALSDYMSFKNVVSWTVMITGYVKNE 219
           ++A RLF QMP ++  ++ +M+ G+++ G+VD A  L   M  KNV+SWT MI G  +NE
Sbjct: 145 DQAERLFYQMPVKDTAAWNSMVHGYLQFGKVDDALKLFKQMPGKNVISWTTMICGLDQNE 204

Query: 220 RFCEARELFYRM----------------------PDYDKNV---------------FVVT 242
           R  EA +LF  M                      P +   +               +V  
Sbjct: 205 RSGEALDLFKNMLRCCIKSTSRPFTCVITACANAPAFHMGIQVHGLIIKLGFLYEEYVSA 264

Query: 243 AMITGFCKVGMLENARLLFERIQPKDCVSFNAMIAGYAQNGVAEEALRLFSGMIKMDMQP 302
           ++IT +     + ++R +F+    +    + A+++GY+ N   E+AL +FSGM++  + P
Sbjct: 265 SLITFYANCKRIGDSRKVFDEKVHEQVAVWTALLSGYSLNKKHEDALSIFSGMLRNSILP 324

Query: 303 DDATLVSVFTACSALQLLNEGRQSHVLVIRNGFEANVSVCNAVITMYSRCGGILDSELAF 362
           + +T  S   +CSAL  L+ G++ H + ++ G E +  V N+++ MYS  G + D+   F
Sbjct: 325 NQSTFASGLNSCSALGTLDWGKEMHGVAVKLGLETDAFVGNSLVVMYSDSGNVNDAVSVF 384

Query: 363 RQIHSPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVN 422
            +I   ++VSWN+II   AQHG  + A + F QM     +PD ITF  LLSAC H G + 
Sbjct: 385 IKIFKKSIVSWNSIIVGCAQHGRGKWAFVIFGQMIRLNKEPDEITFTGLLSACSHCGFLE 444

Query: 423 ESMDLFELMVK-VYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMPFEADTGVWGSLLA 481
           +   LF  M   +  I    +HYTC+VDIL R G+L++A ++ + M  + +  VW +LL+
Sbjct: 445 KGRKLFYYMSSGINHIDRKIQHYTCMVDILGRCGKLKEAEELIERMVVKPNEMVWLALLS 504

Query: 482 ACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRVRLLMKEQGVTKQ 541
           AC ++ +V+ GE AA  +  LD ++SA YV+LSN+YA+AG W +V+++R+ MK+ G+ K+
Sbjct: 505 ACRMHSDVDRGEKAAAAIFNLDSKSSAAYVLLSNIYASAGRWSNVSKLRVKMKKNGIMKK 564

Query: 542 CAYSWIEIGNKVHYFLGGDMSH 563
              SW+ I  K H F  GD  H
Sbjct: 565 PGSSWVVIRGKKHEFFSGDQPH 586

Arabidopsis thaliana (taxid: 3702)

>sp|O04590|PPR88_ARATH Pentatricopeptide repeat-containing protein At1g62260, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E10 PE=2 SV=1

 Score =  350 bits (897), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 200/551 (36%), Positives = 301/551 (54%), Gaps = 59/551 (10%)

Query: 54  NAKISALSRAGKI---SAARQLFDQMTTKDVITWNAIITGYWQNGFLQESKNLFQSMPVK 110
           N  IS     G I     AR+LFD+M ++D  +WN +I+GY +N  + E+  LF+ MP +
Sbjct: 106 NTMISGYVSCGGIRFLEEARKLFDEMPSRDSFSWNTMISGYAKNRRIGEALLLFEKMPER 165

Query: 111 NIVSWNCMIAGCIDNDRIDDAFDYFQAMPERNTA-------------------------- 144
           N VSW+ MI G   N  +D A   F+ MP ++++                          
Sbjct: 166 NAVSWSAMITGFCQNGEVDSAVVLFRKMPVKDSSPLCALVAGLIKNERLSEAAWVLGQYG 225

Query: 145 -----------TYNAMISGFLKHGRLEEATRLFEQMPR---------------RNVISYT 178
                       YN +I G+ + G++E A  LF+Q+P                +NV+S+ 
Sbjct: 226 SLVSGREDLVYAYNTLIVGYGQRGQVEAARCLFDQIPDLCGDDHGGEFRERFCKNVVSWN 285

Query: 179 AMLDGFMKKGEVDKARALSDYMSFKNVVSWTVMITGYVKNERFCEARELFYRMPDYDKNV 238
           +M+  ++K G+V  AR L D M  ++ +SW  MI GYV   R  +A  LF  MP+ D + 
Sbjct: 286 SMIKAYLKVGDVVSARLLFDQMKDRDTISWNTMIDGYVHVSRMEDAFALFSEMPNRDAHS 345

Query: 239 FVVTAMITGFCKVGMLENARLLFERIQPKDCVSFNAMIAGYAQNGVAEEALRLFSGMIKM 298
           +    M++G+  VG +E AR  FE+   K  VS+N++IA Y +N   +EA+ LF  M   
Sbjct: 346 W--NMMVSGYASVGNVELARHYFEKTPEKHTVSWNSIIAAYEKNKDYKEAVDLFIRMNIE 403

Query: 299 DMQPDDATLVSVFTACSALQLLNEGRQSHVLVIRNGFEANVSVCNAVITMYSRCGGILDS 358
             +PD  TL S+ +A + L  L  G Q H +V++     +V V NA+ITMYSRCG I++S
Sbjct: 404 GEKPDPHTLTSLLSASTGLVNLRLGMQMHQIVVKTVI-PDVPVHNALITMYSRCGEIMES 462

Query: 359 ELAFRQIH-SPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGH 417
              F ++     +++WN +I  +A HG+  +AL  F  M  NG  P  ITF+S+L+AC H
Sbjct: 463 RRIFDEMKLKREVITWNAMIGGYAFHGNASEALNLFGSMKSNGIYPSHITFVSVLNACAH 522

Query: 418 AGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMPFEADTGVWG 477
           AG V+E+   F  M+ VY I P  EHY+ LV++ S  GQ E+A  I   MPFE D  VWG
Sbjct: 523 AGLVDEAKAQFVSMMSVYKIEPQMEHYSSLVNVTSGQGQFEEAMYIITSMPFEPDKTVWG 582

Query: 478 SLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRVRLLMKEQG 537
           +LL AC I  NV L  +AA+ M  L+P++S  YV+L N+YA  G+W + ++VR+ M+ + 
Sbjct: 583 ALLDACRIYNNVGLAHVAAEAMSRLEPESSTPYVLLYNMYADMGLWDEASQVRMNMESKR 642

Query: 538 VTKQCAYSWIE 548
           + K+   SW++
Sbjct: 643 IKKERGSSWVD 653

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZUW3|PP172_ARATH Pentatricopeptide repeat-containing protein At2g27610 OS=Arabidopsis thaliana GN=PCMP-H60 PE=2 SV=1

 Score =  348 bits (892), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 192/549 (34%), Positives = 330/549 (60%), Gaps = 22/549 (4%)

Query: 52  VNNAKISALSRAGKISAARQLFDQMTTKDVITWNAIITGYWQNGFLQESKNLFQSMPVKN 111
           V+N+ I+   + G +  AR LFD+   K V+TWN++I+GY  NG   E+  +F SM +  
Sbjct: 231 VSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLDLEALGMFYSMRLNY 290

Query: 112 I----VSWNCMIAGCID------NDRIDDAFDYFQAMPERNTATYNAMISGFLKHGRLEE 161
           +     S+  +I  C +       +++  +   +  + ++N  T  A++  + K   + +
Sbjct: 291 VRLSESSFASVIKLCANLKELRFTEQLHCSVVKYGFLFDQNIRT--ALMVAYSKCTAMLD 348

Query: 162 ATRLFEQMP-RRNVISYTAMLDGFMKKGEVDKARALSDYMSFKNV----VSWTVMITGY- 215
           A RLF+++    NV+S+TAM+ GF++    ++A  L   M  K V     +++V++T   
Sbjct: 349 ALRLFKEIGCVGNVVSWTAMISGFLQNDGKEEAVDLFSEMKRKGVRPNEFTYSVILTALP 408

Query: 216 VKNERFCEARELFYRMPDYDKNVFVVTAMITGFCKVGMLENARLLFERIQPKDCVSFNAM 275
           V +     A+ +     +Y+++  V TA++  + K+G +E A  +F  I  KD V+++AM
Sbjct: 409 VISPSEVHAQVV---KTNYERSSTVGTALLDAYVKLGKVEEAAKVFSGIDDKDIVAWSAM 465

Query: 276 IAGYAQNGVAEEALRLFSGMIKMDMQPDDATLVSVFTACSALQL-LNEGRQSHVLVIRNG 334
           +AGYAQ G  E A+++F  + K  ++P++ T  S+   C+A    + +G+Q H   I++ 
Sbjct: 466 LAGYAQTGETEAAIKMFGELTKGGIKPNEFTFSSILNVCAATNASMGQGKQFHGFAIKSR 525

Query: 335 FEANVSVCNAVITMYSRCGGILDSELAFRQIHSPNLVSWNTIIAAFAQHGHYEKALIFFS 394
            ++++ V +A++TMY++ G I  +E  F++    +LVSWN++I+ +AQHG   KAL  F 
Sbjct: 526 LDSSLCVSSALLTMYAKKGNIESAEEVFKRQREKDLVSWNSMISGYAQHGQAMKALDVFK 585

Query: 395 QMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRA 454
           +M       DG+TF+ + +AC HAG V E    F++MV+   I P+ EH +C+VD+ SRA
Sbjct: 586 EMKKRKVKMDGVTFIGVFAACTHAGLVEEGEKYFDIMVRDCKIAPTKEHNSCMVDLYSRA 645

Query: 455 GQLEKAWQITQGMPFEADTGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLS 514
           GQLEKA ++ + MP  A + +W ++LAAC ++   ELG LAA+K+  + P++SA YV+LS
Sbjct: 646 GQLEKAMKVIENMPNPAGSTIWRTILAACRVHKKTELGRLAAEKIIAMKPEDSAAYVLLS 705

Query: 515 NLYAAAGMWRDVTRVRLLMKEQGVTKQCAYSWIEIGNKVHYFLGGDMSHPCIDKIHLELK 574
           N+YA +G W++  +VR LM E+ V K+  YSWIE+ NK + FL GD SHP  D+I+++L+
Sbjct: 706 NMYAESGDWQERAKVRKLMNERNVKKEPGYSWIEVKNKTYSFLAGDRSHPLKDQIYMKLE 765

Query: 575 RASVQMKSV 583
             S ++K +
Sbjct: 766 DLSTRLKDL 774

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SN39|PP320_ARATH Pentatricopeptide repeat-containing protein At4g18750, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H45 PE=2 SV=1

 Score =  343 bits (881), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 186/551 (33%), Positives = 313/551 (56%), Gaps = 29/551 (5%)

Query: 52  VNNAKISALSRAGKISAARQLFDQMTTKDVITWNAIITGYWQNGFLQESKNLFQSMPVKN 111
           V N+ ++   +  ++ +AR++FD+MT +DVI+WN+II GY  NG  ++  ++F  M V  
Sbjct: 232 VGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLVSG 291

Query: 112 I----VSWNCMIAGCIDNDRIDDAFDY----FQAMPERNTATYNAMISGFLKHGRLEEAT 163
           I     +   + AGC D+  I           +A   R     N ++  + K G L+ A 
Sbjct: 292 IEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAK 351

Query: 164 RLFEQMPRRNVISYTAMLDGFMKKGEVDKARALSDYMSFKNVVSWTVMITGYVKNERFCE 223
            +F +M  R+V+SYT+M+ G+ ++G   +A  L + M  + +      +T  +     C 
Sbjct: 352 AVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLN----CC 407

Query: 224 ARELFYRMPDYDK-------------NVFVVTAMITGFCKVGMLENARLLFERIQPKDCV 270
           AR   YR+ D  K             ++FV  A++  + K G ++ A L+F  ++ KD +
Sbjct: 408 AR---YRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRVKDII 464

Query: 271 SFNAMIAGYAQNGVAEEALRLFSGMIKMD-MQPDDATLVSVFTACSALQLLNEGRQSHVL 329
           S+N +I GY++N  A EAL LF+ +++     PD+ T+  V  AC++L   ++GR+ H  
Sbjct: 465 SWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPACASLSAFDKGREIHGY 524

Query: 330 VIRNGFEANVSVCNAVITMYSRCGGILDSELAFRQIHSPNLVSWNTIIAAFAQHGHYEKA 389
           ++RNG+ ++  V N+++ MY++CG +L + + F  I S +LVSW  +IA +  HG  ++A
Sbjct: 525 IMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDIASKDLVSWTVMIAGYGMHGFGKEA 584

Query: 390 LIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVD 449
           +  F+QM   G + D I+F+SLL AC H+G V+E    F +M     I P+ EHY C+VD
Sbjct: 585 IALFNQMRQAGIEADEISFVSLLYACSHSGLVDEGWRFFNIMRHECKIEPTVEHYACIVD 644

Query: 450 ILSRAGQLEKAWQITQGMPFEADTGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAV 509
           +L+R G L KA++  + MP   D  +WG+LL  C I+ +V+L E  A+K+ EL+P+N+  
Sbjct: 645 MLARTGDLIKAYRFIENMPIPPDATIWGALLCGCRIHHDVKLAEKVAEKVFELEPENTGY 704

Query: 510 YVMLSNLYAAAGMWRDVTRVRLLMKEQGVTKQCAYSWIEIGNKVHYFLGGDMSHPCIDKI 569
           YV+++N+YA A  W  V R+R  + ++G+ K    SWIEI  +V+ F+ GD S+P  + I
Sbjct: 705 YVLMANIYAEAEKWEQVKRLRKRIGQRGLRKNPGCSWIEIKGRVNIFVAGDSSNPETENI 764

Query: 570 HLELKRASVQM 580
              L++   +M
Sbjct: 765 EAFLRKVRARM 775

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	597
147826737	1301	hypothetical protein VITISV_010023 [Viti	0.946	0.434	0.614	0.0
359480506	590	PREDICTED: pentatricopeptide repeat-cont	0.954	0.966	0.614	0.0
297741829	1198	unnamed protein product [Vitis vinifera]	0.855	0.426	0.639	0.0
356528451	579	PREDICTED: pentatricopeptide repeat-cont	0.919	0.948	0.604	0.0
413925171	567	hypothetical protein ZEAMMB73_773985 [Ze	0.921	0.970	0.513	1e-167
242082435	567	hypothetical protein SORBIDRAFT_07g02913	0.921	0.970	0.509	1e-167
357148182	553	PREDICTED: pentatricopeptide repeat-cont	0.904	0.976	0.515	1e-167
115476932	563	Os08g0481000 [Oryza sativa Japonica Grou	0.911	0.966	0.515	1e-165
359491499	766	PREDICTED: pentatricopeptide repeat-cont	0.881	0.686	0.423	1e-131
297734304	685	unnamed protein product [Vitis vinifera]	0.894	0.779	0.416	1e-131

>gi|147826737|emb|CAN70653.1| hypothetical protein VITISV_010023 [Vitis vinifera]

 Score =  756 bits (1952), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 354/576 (61%), Positives = 452/576 (78%), Gaps = 11/576 (1%)

Query: 14  RILFPPILRILSTPDSCGNFTPHSSNCLIRLFSTQYVFVNNAKISALSRAGKISAARQLF 73
           R +F PI    +       F P S    I+LFSTQ V+  N +I  L+RAG I AARQ+F
Sbjct: 20  RTIFLPIFHSFNR-----QFHPLS----IKLFSTQDVYAFNVQIGNLARAGNIGAARQVF 70

Query: 74  DQMTTKDVITWNAIITGYWQNGFLQESKNLFQSMPVKNIVSWNCMIAGCIDNDRIDDAFD 133
           D+M  +D ++WN+IITGYW+NG   ESK LF  MP KN+VSWN MIAGCI+++RID+A+ 
Sbjct: 71  DEMPHRDTVSWNSIITGYWKNGCFDESKRLFGLMPTKNVVSWNSMIAGCIEDERIDEAWQ 130

Query: 134 YFQAMPERNTATYNAMISGFLKHGRLEEATRLFEQMPRRNVISYTAMLDGFMKKGEVDKA 193
           YFQAMP+RNTA++NAMISG +++ R+EEA+RLFE+MPRRNVISYTAM+DG+ K GE+++A
Sbjct: 131 YFQAMPQRNTASWNAMISGLVRYDRVEEASRLFEEMPRRNVISYTAMVDGYAKIGEIEQA 190

Query: 194 RALSDYMSFKNVVSWTVMITGYVKNERFCEARELFYRMPDYDKNVFVVTAMITGFCKVGM 253
           RAL + M  KNVVSWTVMI+GYV+N +F EA  LF +MPD  KN+  +TAMITG+CK G 
Sbjct: 191 RALFNCMPQKNVVSWTVMISGYVENGKFDEAENLFEQMPD--KNIVAMTAMITGYCKEGK 248

Query: 254 LENARLLFERIQPKDCVSFNAMIAGYAQNGVAEEALRLFSGMIKMDMQPDDATLVSVFTA 313
            + A++LF++I  +D  S+NAMI GYAQNG  EEAL+L S M+KM MQPD +TL+SV TA
Sbjct: 249 TDKAKILFDQIPCRDLASWNAMITGYAQNGSGEEALKLHSQMLKMGMQPDHSTLISVLTA 308

Query: 314 CSALQLLNEGRQSHVLVIRNGFEANVSVCNAVITMYSRCGGILDSELAFRQIHSPNLVSW 373
           CS+L  L EGR++HVLV+++G+E+ +S+CNA+ITMY +CG ILDSELAFRQI  P++VSW
Sbjct: 309 CSSLASLQEGRKTHVLVLKSGYESRISICNALITMYCKCGSILDSELAFRQIDHPDVVSW 368

Query: 374 NTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMVK 433
           N +IAAFA+HG Y++AL  F +M  N  +PDGITFLSLLSACGHAGKV+ES++ F  M+ 
Sbjct: 369 NAMIAAFARHGFYDRALASFGEMRSNRVEPDGITFLSLLSACGHAGKVHESLNWFNSMIX 428

Query: 434 VYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMPFEADTGVWGSLLAACVINLNVELGE 493
            Y I+   EH+ CLVDILSR GQ+EKA++I Q MPFEAD G+WG+LLAAC ++LNV+LGE
Sbjct: 429 SYKIVXRPEHFACLVDILSRGGQVEKAYKIIQEMPFEADCGIWGALLAACHVHLNVKLGE 488

Query: 494 LAAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRVRLLMKEQGVTKQCAYSWIEIGNKV 553
           LAAKK+ EL+PQNS  YV+LSN+YAAAGMW +VTRVR LM+EQGV KQ AYSW+EI NKV
Sbjct: 489 LAAKKIVELEPQNSGAYVVLSNIYAAAGMWGEVTRVRGLMREQGVKKQPAYSWMEIDNKV 548

Query: 554 HYFLGGDMSHPCIDKIHLELKRASVQMKSVDDFVEI 589
           H+FLG D SHP I +I LELK   +QM + DD  E+
Sbjct: 549 HFFLGDDASHPEIHRIRLELKGMKLQMIADDDIEEV 584

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359480506|ref|XP_003632478.1| PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like [Vitis vinifera]

 Score =  746 bits (1927), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/581 (61%), Positives = 457/581 (78%), Gaps = 11/581 (1%)

Query: 14  RILFPPILRILSTPDSCGNFTPHSSNCLIRLFSTQYVFVNNAKISALSRAGKISAARQLF 73
           R +F PI    +       F P S    I+LFSTQ V+  N +I  L+RAG I AARQLF
Sbjct: 20  RTIFLPIFHSFNR-----QFHPLS----IKLFSTQDVYAFNVQIGNLARAGNIGAARQLF 70

Query: 74  DQMTTKDVITWNAIITGYWQNGFLQESKNLFQSMPVKNIVSWNCMIAGCIDNDRIDDAFD 133
           D+M  +D ++WN+IITGYW+NG   ESK LF  MP KN+VSWN MIAGCI+++RID+A+ 
Sbjct: 71  DEMPHRDTVSWNSIITGYWKNGCFDESKRLFGLMPTKNVVSWNSMIAGCIEDERIDEAWQ 130

Query: 134 YFQAMPERNTATYNAMISGFLKHGRLEEATRLFEQMPRRNVISYTAMLDGFMKKGEVDKA 193
           YFQAMP+RNTA++NAMISG +++ R+EEA+RLFE+MPRRNVISYTAM+DG+ K GE+++A
Sbjct: 131 YFQAMPQRNTASWNAMISGLVRYDRVEEASRLFEEMPRRNVISYTAMVDGYAKIGEIEQA 190

Query: 194 RALSDYMSFKNVVSWTVMITGYVKNERFCEARELFYRMPDYDKNVFVVTAMITGFCKVGM 253
           RAL + M  KNVVSWTVMI+GYV+N +F EA  LF +MPD  KN+  +TAMITG+CK G 
Sbjct: 191 RALFNCMPQKNVVSWTVMISGYVENGKFDEAENLFEQMPD--KNIVAMTAMITGYCKEGK 248

Query: 254 LENARLLFERIQPKDCVSFNAMIAGYAQNGVAEEALRLFSGMIKMDMQPDDATLVSVFTA 313
            + A++LF++I  +D  S+NAMI GYAQNG  EEAL+L S M+KM MQPD +TL+SV TA
Sbjct: 249 TDKAKILFDQIPCRDLASWNAMITGYAQNGSGEEALKLHSQMLKMGMQPDHSTLISVLTA 308

Query: 314 CSALQLLNEGRQSHVLVIRNGFEANVSVCNAVITMYSRCGGILDSELAFRQIHSPNLVSW 373
           CS+L  L EGR++HVLV+++G+E+ +S+CNA+ITMY +CG ILDSELAFRQI  P++VSW
Sbjct: 309 CSSLASLQEGRKTHVLVLKSGYESRISICNALITMYCKCGSILDSELAFRQIDHPDVVSW 368

Query: 374 NTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMVK 433
           N +IAAFA+HG Y++AL  F +M  N  +PDGITFLSLLSACGHAGKV+ES++ F  M++
Sbjct: 369 NAMIAAFARHGFYDRALASFGEMRSNRVEPDGITFLSLLSACGHAGKVHESLNWFNSMIE 428

Query: 434 VYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMPFEADTGVWGSLLAACVINLNVELGE 493
            Y I+P  EH+ CLVDILSR GQ+EKA++I Q MPFEAD G+WG+LLAAC ++LNV+LGE
Sbjct: 429 SYKIVPRPEHFACLVDILSRGGQVEKAYKIIQEMPFEADCGIWGALLAACHVHLNVKLGE 488

Query: 494 LAAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRVRLLMKEQGVTKQCAYSWIEIGNKV 553
           LAAKK+ EL+PQNS  YV+LSN+YAAAGMW +VTRVR LM+EQGV KQ AYSW+EI NKV
Sbjct: 489 LAAKKIVELEPQNSGAYVVLSNIYAAAGMWGEVTRVRGLMREQGVKKQPAYSWMEIDNKV 548

Query: 554 HYFLGGDMSHPCIDKIHLELKRASVQMKSVDDFVEIATSWS 594
           H+FLG D SHP I +I LELK   +QM + DD  E+ ++ S
Sbjct: 549 HFFLGDDASHPEIHRIRLELKGMKLQMIADDDIEEVFSACS 589

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297741829|emb|CBI33142.3| unnamed protein product [Vitis vinifera]

 Score =  720 bits (1859), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 328/513 (63%), Positives = 418/513 (81%), Gaps = 2/513 (0%)

Query: 76  MTTKDVITWNAIITGYWQNGFLQESKNLFQSMPVKNIVSWNCMIAGCIDNDRIDDAFDYF 135
           M  +D ++WN+IITGYW+NG   ESK LF  MP KN+VSWN MIAGCI+++RID+A+ YF
Sbjct: 1   MPHRDTVSWNSIITGYWKNGCFDESKRLFGLMPTKNVVSWNSMIAGCIEDERIDEAWQYF 60

Query: 136 QAMPERNTATYNAMISGFLKHGRLEEATRLFEQMPRRNVISYTAMLDGFMKKGEVDKARA 195
           QAMP+RNTA++NAMISG +++ R+EEA+RLFE+MPRRNVISYTAM+DG+ K GE+++ARA
Sbjct: 61  QAMPQRNTASWNAMISGLVRYDRVEEASRLFEEMPRRNVISYTAMVDGYAKIGEIEQARA 120

Query: 196 LSDYMSFKNVVSWTVMITGYVKNERFCEARELFYRMPDYDKNVFVVTAMITGFCKVGMLE 255
           L + M  KNVVSWTVMI+GYV+N +F EA  LF +MPD  KN+  +TAMITG+CK G  +
Sbjct: 121 LFNCMPQKNVVSWTVMISGYVENGKFDEAENLFEQMPD--KNIVAMTAMITGYCKEGKTD 178

Query: 256 NARLLFERIQPKDCVSFNAMIAGYAQNGVAEEALRLFSGMIKMDMQPDDATLVSVFTACS 315
            A++LF++I  +D  S+NAMI GYAQNG  EEAL+L S M+KM MQPD +TL+SV TACS
Sbjct: 179 KAKILFDQIPCRDLASWNAMITGYAQNGSGEEALKLHSQMLKMGMQPDHSTLISVLTACS 238

Query: 316 ALQLLNEGRQSHVLVIRNGFEANVSVCNAVITMYSRCGGILDSELAFRQIHSPNLVSWNT 375
           +L  L EGR++HVLV+++G+E+ +S+CNA+ITMY +CG ILDSELAFRQI  P++VSWN 
Sbjct: 239 SLASLQEGRKTHVLVLKSGYESRISICNALITMYCKCGSILDSELAFRQIDHPDVVSWNA 298

Query: 376 IIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMVKVY 435
           +IAAFA+HG Y++AL  F +M  N  +PDGITFLSLLSACGHAGKV+ES++ F  M++ Y
Sbjct: 299 MIAAFARHGFYDRALASFGEMRSNRVEPDGITFLSLLSACGHAGKVHESLNWFNSMIESY 358

Query: 436 GIIPSSEHYTCLVDILSRAGQLEKAWQITQGMPFEADTGVWGSLLAACVINLNVELGELA 495
            I+P  EH+ CLVDILSR GQ+EKA++I Q MPFEAD G+WG+LLAAC ++LNV+LGELA
Sbjct: 359 KIVPRPEHFACLVDILSRGGQVEKAYKIIQEMPFEADCGIWGALLAACHVHLNVKLGELA 418

Query: 496 AKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRVRLLMKEQGVTKQCAYSWIEIGNKVHY 555
           AKK+ EL+PQNS  YV+LSN+YAAAGMW +VTRVR LM+EQGV KQ AYSW+EI NKVH+
Sbjct: 419 AKKIVELEPQNSGAYVVLSNIYAAAGMWGEVTRVRGLMREQGVKKQPAYSWMEIDNKVHF 478

Query: 556 FLGGDMSHPCIDKIHLELKRASVQMKSVDDFVE 588
           FLG D SHP I +I LELK   +QM + DD  E
Sbjct: 479 FLGDDASHPEIHRIRLELKGMKLQMIADDDIEE 511

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356528451|ref|XP_003532816.1| PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like [Glycine max]

 Score =  691 bits (1783), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 335/554 (60%), Positives = 425/554 (76%), Gaps = 5/554 (0%)

Query: 36  HSSNCLIRLFS-TQYVFVNNAKISALSRAGKISAARQLFDQMTTKDVITWNAIITGYWQN 94
           HS   L  LFS T+ V+  N  I ALSRAGK+ AAR+LFD+M TKDV+TWN++++ YWQN
Sbjct: 14  HSFFVLATLFSSTRDVYHANLDIVALSRAGKVDAARKLFDEMATKDVVTWNSMLSAYWQN 73

Query: 95  GFLQESKNLFQSMPVKNIVSWNCMIAGCIDNDRIDDAFDYFQAMPERNTATYNAMISGFL 154
           G LQ SK LF SMP++N+VSWN +IA C+ ND + DAF Y  A PE+N A+YNA+ISG  
Sbjct: 74  GLLQRSKALFHSMPLRNVVSWNSIIAACVQNDNLQDAFRYLAAAPEKNAASYNAIISGLA 133

Query: 155 KHGRLEEATRLFEQMPRRNVISYTAMLDGFMK-KGEVDKARALSDYMSFKNVVSWTVMIT 213
           + GR+++A RLFE MP  NV+SYTAM+DG+ + +G + +ARAL + M  +N VSW VMI 
Sbjct: 134 RCGRMKDAQRLFEAMPCPNVVSYTAMVDGYARVEGGIGRARALFEAMPRRNSVSWVVMIN 193

Query: 214 GYVKNERFCEARELFYRMPDYDKNVFVVTAMITGFCKVGMLENARLLFERIQPKDCVSFN 273
           G V+N    EA E+F RMP   KN    TAMITGFCK G +E+AR LF+ I+ +D VS+N
Sbjct: 194 GLVENGLCEEAWEVFVRMPQ--KNDVARTAMITGFCKEGRMEDARDLFQEIRCRDLVSWN 251

Query: 274 AMIAGYAQNGVAEEALRLFSGMIKMDMQPDDATLVSVFTACSALQLLNEGRQSHVLVIRN 333
            ++ GYAQNG  EEAL LFS MI+  MQPDD T VSVF AC++L  L EG ++H L+I++
Sbjct: 252 IIMTGYAQNGRGEEALNLFSQMIRTGMQPDDLTFVSVFIACASLASLEEGSKAHALLIKH 311

Query: 334 GFEANVSVCNAVITMYSRCGGILDSELAFRQIHSPNLVSWNTIIAAFAQHGHYEKALIFF 393
           GF++++SVCNA+IT++S+CGGI+DSEL F QI  P+LVSWNTIIAAFAQHG Y+KA  +F
Sbjct: 312 GFDSDLSVCNALITVHSKCGGIVDSELVFGQISHPDLVSWNTIIAAFAQHGLYDKARSYF 371

Query: 394 SQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSR 453
            QM      PDGITFLSLLSAC  AGKVNESM+LF LMV  YGI P SEHY CLVD++SR
Sbjct: 372 DQMVTVSVQPDGITFLSLLSACCRAGKVNESMNLFSLMVDNYGIPPRSEHYACLVDVMSR 431

Query: 454 AGQLEKAWQITQGMPFEADTGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVML 513
           AGQL++A +I   MPF+AD+ +WG++LAAC ++LNVELGELAA+++  LDP NS  YVML
Sbjct: 432 AGQLQRACKIINEMPFKADSSIWGAVLAACSVHLNVELGELAARRILNLDPFNSGAYVML 491

Query: 514 SNLYAAAGMWRDVTRVRLLMKEQGVTKQCAYSWIEIGNKVHYFLGGDMSHPCIDKIHLEL 573
           SN+YAAAG W+DV R+R+LMKEQGV KQ AYSW++IGNK HYF+GGD SHP I+ IH+ L
Sbjct: 492 SNIYAAAGKWKDVHRIRVLMKEQGVKKQTAYSWLQIGNKTHYFVGGDPSHPNINDIHVAL 551

Query: 574 KRASVQMKSVDDFV 587
           +R ++ MK V DFV
Sbjct: 552 RRITLHMK-VKDFV 564

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|413925171|gb|AFW65103.1| hypothetical protein ZEAMMB73_773985 [Zea mays]

 Score =  595 bits (1535), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 287/559 (51%), Positives = 397/559 (71%), Gaps = 9/559 (1%)

Query: 45  FSTQYVFVNNAKISALSRAGKISAARQLFDQMTTKDVITWNAIITGYWQNG--FLQESKN 102
            + + +  +N +ISAL+RAG ++AAR++FD MT +DV++WNA++T  W+ G   L  ++ 
Sbjct: 10  LAARRLLRDNQRISALARAGDVAAARRVFDAMTHRDVVSWNALLTALWRAGRHHLPAARR 69

Query: 103 LF-QSMPVKNIVSWNCMIAGCIDNDRIDDAFDYFQAMPERNTATYNAMISGFLKHGRLEE 161
           LF ++MP +++VSWN +IAGC+ +  +D A  YF   PERN AT+NAM++G ++ GR+ +
Sbjct: 70  LFDEAMPSRDVVSWNSIIAGCLAHGDLDAASAYFAGAPERNVATWNAMLAGLVRLGRVVD 129

Query: 162 ATRLFEQMPRRNVISYTAMLDGFMKKGEVDKARALSDYMSFKNVVSWTVMITGYVKNERF 221
           A RLF++MP RNV+SYT M+D   ++GEV++AR + D M  +N+VSW  MI+G V+N  F
Sbjct: 130 AQRLFDEMPERNVVSYTTMVDWLARRGEVERAREVFDSMPDRNLVSWAAMISGCVENGMF 189

Query: 222 CEARELFYRMPDYDKNVFVVTAMITGFCKVGMLENARLLFERIQPKDCVSFNAMIAGYAQ 281
            EARELF  MP+  KNV   TAMITG CK G +++AR LF+ I+ KD +S+NAMIAGY  
Sbjct: 190 VEARELFEAMPE--KNVVACTAMITGHCKQGDVDSARRLFDGIRAKDVISWNAMIAGYVH 247

Query: 282 NGVAEEALRLFSGMIKMDMQPDDATLVSVFTACSALQLLNEGRQSHVLVIRNGFEANVSV 341
           NG  EEA+RL + M +  ++PD ATL++V TACSAL LL +G+ +H + I+   E+ +S 
Sbjct: 248 NGHGEEAMRLHALMFREGVKPDHATLIAVLTACSALALLRQGKSTHAIAIKAMLESGISF 307

Query: 342 CNAVITMYSRCGGILDSELAFRQIHSPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGF 401
            NA++TMYS+CG + +SEL F  + + ++VSWNTIIAA+AQHG Y+K +  F +M + G 
Sbjct: 308 SNALMTMYSKCGNVGESELVFINLRTKDIVSWNTIIAAYAQHGKYQKVIALFHEMEVTGL 367

Query: 402 DPDGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAW 461
            PD ITFLS+LSACGH G V+ S+ LF+LM   Y I P +EHY C+VDILSRAGQLEKA 
Sbjct: 368 IPDDITFLSVLSACGHVGMVDASLKLFDLMSSKYAISPRAEHYACIVDILSRAGQLEKAS 427

Query: 462 QITQGMPFEADTGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAG 521
              + MP +A+  VWGSLL AC I+ NV+LGELAAK + + D Q+S  YV+LSN+YAAAG
Sbjct: 428 SYIKHMPLKAEKNVWGSLLGACQIHGNVQLGELAAKMLVQSDSQSSGPYVILSNIYAAAG 487

Query: 522 MWRDVTRVRLLMKEQGVTKQCAYSWIEIGNKVHYFLGGDMSHPCIDKIHLELKRASVQMK 581
           MW  V ++R  MKE+GV KQ  YSW EIGN+VH F+GGD SHP + KI  EL++ S  M+
Sbjct: 488 MWGQVNQIRGQMKERGVKKQPGYSWTEIGNEVHMFVGGDASHPEMRKIISELRKISFHMR 547

Query: 582 SVDD----FVEIATSWSSF 596
            V +     VE+A     F
Sbjct: 548 MVTNEAHIMVELAQECGHF 566

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242082435|ref|XP_002445986.1| hypothetical protein SORBIDRAFT_07g029130 [Sorghum bicolor] gi|241942336|gb|EES15481.1| hypothetical protein SORBIDRAFT_07g029130 [Sorghum bicolor]

 Score =  595 bits (1533), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 285/559 (50%), Positives = 395/559 (70%), Gaps = 9/559 (1%)

Query: 45  FSTQYVFVNNAKISALSRAGKISAARQLFDQMTTKDVITWNAIITGYWQNG--FLQESKN 102
            + + +  +N +ISAL+RAG ++AAR++FD M  +DV++WNA++T  W+ G   L  ++ 
Sbjct: 10  LAARRLLRDNQRISALARAGDVAAARRVFDAMPHRDVVSWNALLTALWRAGRHHLPAARR 69

Query: 103 LF-QSMPVKNIVSWNCMIAGCIDNDRIDDAFDYFQAMPERNTATYNAMISGFLKHGRLEE 161
           LF ++MP +++VSWN +IAGC+ +  +D A  YF   P+RN AT+NAM++G L+ GR ++
Sbjct: 70  LFDEAMPSRDVVSWNSIIAGCLAHGDLDAASAYFAGAPKRNVATWNAMLAGLLRLGRADD 129

Query: 162 ATRLFEQMPRRNVISYTAMLDGFMKKGEVDKARALSDYMSFKNVVSWTVMITGYVKNERF 221
           A RLF +MP+RNV+SYT M+DG  ++GEV +AR + D M  +N+VSW  MI+GYV+N  F
Sbjct: 130 ADRLFGEMPKRNVVSYTTMVDGLARRGEVARAREVFDAMPDRNLVSWAAMISGYVENGMF 189

Query: 222 CEARELFYRMPDYDKNVFVVTAMITGFCKVGMLENARLLFERIQPKDCVSFNAMIAGYAQ 281
            EA +LF  MP+  KNV   TAMIT +CK G +E+AR LF+ I+ KD +S+N MIAGY  
Sbjct: 190 VEATKLFEAMPE--KNVVACTAMITSYCKQGDVESARRLFDGIRAKDVISWNTMIAGYVH 247

Query: 282 NGVAEEALRLFSGMIKMDMQPDDATLVSVFTACSALQLLNEGRQSHVLVIRNGFEANVSV 341
           NG  EEA+RL + M +  ++PD ATL++V TACSAL LL +G+ +H + I+   E+ +S 
Sbjct: 248 NGHGEEAMRLHAVMFREGVKPDHATLIAVLTACSALALLRQGKSTHAIAIKAMLESGISF 307

Query: 342 CNAVITMYSRCGGILDSELAFRQIHSPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGF 401
            NA++TMYS+CG + +SEL F  + + ++VSWNTIIAA+AQHG Y+K +  F +M + G 
Sbjct: 308 SNALMTMYSKCGNVGESELVFINLRTKDIVSWNTIIAAYAQHGKYQKVIALFHEMEMTGL 367

Query: 402 DPDGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAW 461
            PD ITFLS+LSACGH GKV+ S+ LF+LM   Y I P +EHY C+VDILSRAGQLEKA 
Sbjct: 368 IPDDITFLSVLSACGHVGKVDASLKLFDLMSSKYAISPRAEHYACIVDILSRAGQLEKAS 427

Query: 462 QITQGMPFEADTGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAG 521
              + MP EA+  VWGSLL AC ++ NV+LGELAAK + + D ++S  YV+LSN+YAAAG
Sbjct: 428 SYIKDMPLEAEKNVWGSLLGACQMHGNVQLGELAAKMLVQSDSESSGPYVILSNIYAAAG 487

Query: 522 MWRDVTRVRLLMKEQGVTKQCAYSWIEIGNKVHYFLGGDMSHPCIDKIHLELKRASVQMK 581
           MW  V +VR  MKE+GV KQ  YSW EI N+VH F+GGD SHP + KI  EL++ S  M+
Sbjct: 488 MWGQVNQVRGQMKERGVKKQPGYSWTEIANEVHMFVGGDASHPEMRKIISELRKISFHMR 547

Query: 582 SVDD----FVEIATSWSSF 596
            V +     VE+A     F
Sbjct: 548 MVTNEAHIMVELAQECGHF 566

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357148182|ref|XP_003574661.1| PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like [Brachypodium distachyon]

 Score =  593 bits (1529), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 280/543 (51%), Positives = 389/543 (71%), Gaps = 3/543 (0%)

Query: 44  LFSTQYVFVNNAKISALSRAGKISAARQLFDQMTTKDVITWNAIITGYWQNGF-LQESKN 102
           + +T+ +  +N +I+AL+RAG ++AAR++FD M  +DV++WNA++T  W+ G  L  ++ 
Sbjct: 1   MLATRLLVRDNQRITALARAGDVAAARRVFDAMPRRDVVSWNALLTALWRAGRDLPAARR 60

Query: 103 LFQSMPVKNIVSWNCMIAGCIDNDRIDDAFDYFQAMPERNTATYNAMISGFLKHGRLEEA 162
           LF  MP +N++SWN ++AGC+ +  +D A  YF   P RN A++NAM++G ++ GR+++A
Sbjct: 61  LFDDMPSRNVISWNSVVAGCLAHGDLDAASAYFARAPRRNVASWNAMLAGLVRLGRMDDA 120

Query: 163 TRLFEQMPRRNVISYTAMLDGFMKKGEVDKARALSDYMSFKNVVSWTVMITGYVKNERFC 222
             LF +MP+RNV+SYT M+DG  ++GEV +AR + D M  +N+VSW  MITGYV+N  F 
Sbjct: 121 WALFGEMPQRNVVSYTTMVDGLARRGEVARAREVFDAMPERNLVSWAAMITGYVENAMFD 180

Query: 223 EARELFYRMPDYDKNVFVVTAMITGFCKVGMLENARLLFERIQPKDCVSFNAMIAGYAQN 282
           EAR+LF  MPD  KNV   TAMITG+CK G +E+AR LF+ I  KD +S+NAMI GY  N
Sbjct: 181 EARKLFEAMPD--KNVVACTAMITGYCKDGDVESARRLFDGIPVKDVISWNAMITGYVHN 238

Query: 283 GVAEEALRLFSGMIKMDMQPDDATLVSVFTACSALQLLNEGRQSHVLVIRNGFEANVSVC 342
           G  EEA++L   M +  ++PD ATL+++ TACSAL LL +GR +H +  +   E++ S C
Sbjct: 239 GHGEEAMKLHIIMFREGVKPDHATLIAILTACSALALLRQGRSTHAVATKTMLESSTSFC 298

Query: 343 NAVITMYSRCGGILDSELAFRQIHSPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFD 402
           NA++TMYS+CG + +SEL F  +   ++VSWNTIIAA+AQHG Y+KA+  F +M   G  
Sbjct: 299 NALMTMYSKCGNVGESELVFMNLKIQDIVSWNTIIAAYAQHGKYQKAIALFHEMETRGLI 358

Query: 403 PDGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQ 462
           P+ IT LS+LSACGH G+VN+S++LF+LM   Y I PS+EHY C+VDIL RAGQLEKA  
Sbjct: 359 PNDITILSMLSACGHVGRVNDSLELFDLMSSKYAISPSAEHYACVVDILGRAGQLEKACS 418

Query: 463 ITQGMPFEADTGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGM 522
             + MPFEA+  VWG+LL A   + NV+LGELAAK + + D  +S  YVMLSN+YAAAGM
Sbjct: 419 YIKKMPFEAERNVWGALLGASKTHGNVQLGELAAKMLVQSDSVSSGPYVMLSNIYAAAGM 478

Query: 523 WRDVTRVRLLMKEQGVTKQCAYSWIEIGNKVHYFLGGDMSHPCIDKIHLELKRASVQMKS 582
           W +V RVR  MKE+GV KQ  YSW EI NKV+ F+GGD SHP ++KI  EL++ S  M+ 
Sbjct: 479 WGEVNRVRGQMKEKGVKKQPGYSWTEIANKVNMFVGGDASHPEMNKIISELRKISFHMQM 538

Query: 583 VDD 585
           + D
Sbjct: 539 MTD 541

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115476932|ref|NP_001062062.1| Os08g0481000 [Oryza sativa Japonica Group] gi|42409025|dbj|BAD10278.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza sativa Japonica Group] gi|113624031|dbj|BAF23976.1| Os08g0481000 [Oryza sativa Japonica Group] gi|215715342|dbj|BAG95093.1| unnamed protein product [Oryza sativa Japonica Group] gi|222640747|gb|EEE68879.1| hypothetical protein OsJ_27695 [Oryza sativa Japonica Group]

 Score =  588 bits (1517), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 282/547 (51%), Positives = 393/547 (71%), Gaps = 3/547 (0%)

Query: 44  LFSTQYVFVNNAKISALSRAGKISAARQLFDQMTTKDVITWNAIITGYWQNGF-LQESKN 102
           L S++ +  +N +I+AL+RAG ++AAR++FD M  +D ++WNA++T  W+ G  L  +++
Sbjct: 10  LASSRLLVRDNQRITALARAGDVAAARRVFDAMPRRDAVSWNALLTALWRAGRDLPAARS 69

Query: 103 LFQSMPVKNIVSWNCMIAGCIDNDRIDDAFDYFQAMPERNTATYNAMISGFLKHGRLEEA 162
           LF  MP +N++SWN +IAGC+ +  +  A  YF   P RN A++NAM++G ++ G +E+A
Sbjct: 70  LFDDMPSRNVISWNSIIAGCLAHGDLAAASAYFARAPRRNVASWNAMLAGLVRLGSMEDA 129

Query: 163 TRLFEQMPRRNVISYTAMLDGFMKKGEVDKARALSDYMSFKNVVSWTVMITGYVKNERFC 222
             LF+QMP RNV+SYT M+DG  + GEV  AR L D M  +N+VSW  MI+GYV N    
Sbjct: 130 RSLFDQMPERNVVSYTTMVDGLARCGEVASARELFDAMPTRNLVSWAAMISGYVDNNMLE 189

Query: 223 EARELFYRMPDYDKNVFVVTAMITGFCKVGMLENARLLFERIQPKDCVSFNAMIAGYAQN 282
           EAR+LF  MP+  KNV   TAMITG+CK G L+NAR LF+ I+ KD +S+NA+I+GY  N
Sbjct: 190 EARKLFEAMPE--KNVVACTAMITGYCKEGDLQNARRLFDGIRAKDVISWNAIISGYVHN 247

Query: 283 GVAEEALRLFSGMIKMDMQPDDATLVSVFTACSALQLLNEGRQSHVLVIRNGFEANVSVC 342
           G+ EEA +L+  M++  ++PD ATL+++ TACS+L LL +GR +H +VI+   E+++S+C
Sbjct: 248 GLGEEATKLYIIMLREGIKPDQATLIALLTACSSLALLRQGRSTHAVVIKAMLESSISIC 307

Query: 343 NAVITMYSRCGGILDSELAFRQIHSPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFD 402
           NA++TMYS+CG + +SEL F  + S ++VSWNTIIAA+AQHG Y+K +  F +M L G  
Sbjct: 308 NALMTMYSKCGNVDESELVFMSLKSQDIVSWNTIIAAYAQHGRYQKVIALFHEMELCGLI 367

Query: 403 PDGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQ 462
           P+ ITFLS+LSACGHAG+V+ES+ LF+LM   Y I P +EHY C+VDILSRAGQLEKA  
Sbjct: 368 PNDITFLSMLSACGHAGRVDESLKLFDLMFSKYAISPRAEHYACIVDILSRAGQLEKACS 427

Query: 463 ITQGMPFEADTGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGM 522
             + MP EA+  VWG+LL A   + NV+LGELAAK +   D ++S  YVMLSN+YAAAGM
Sbjct: 428 YIKEMPSEAEKNVWGTLLCASQTHGNVQLGELAAKMLVLSDFESSGAYVMLSNIYAAAGM 487

Query: 523 WRDVTRVRLLMKEQGVTKQCAYSWIEIGNKVHYFLGGDMSHPCIDKIHLELKRASVQMKS 582
           W +V RVR  MKE+GV KQ  +SW EI +KVH F+GGD SHP +D I  EL++ S  M+ 
Sbjct: 488 WGEVNRVRSQMKEKGVKKQPGHSWTEIADKVHMFVGGDASHPEMDMILSELRKISFHMQM 547

Query: 583 VDDFVEI 589
           V D  ++
Sbjct: 548 VTDKTQM 554

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359491499|ref|XP_003634283.1| PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like [Vitis vinifera]

 Score =  476 bits (1226), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 237/559 (42%), Positives = 346/559 (61%), Gaps = 33/559 (5%)

Query: 54  NAKISALSRAGKISAARQLFDQMTTKDVITWNAIITGYWQNGFLQESKNLFQSMPVKN-- 111
           N  IS   R   + AAR LFDQM  +DV++WNA+++GY QNG+++E+K +F  MP KN  
Sbjct: 115 NVMISGCVRYRNLRAARLLFDQMPERDVVSWNAMLSGYAQNGYVKEAKEIFDEMPCKNSI 174

Query: 112 -----------------------------IVSWNCMIAGCIDNDRIDDAFDYFQAMPERN 142
                                        ++SWNCM+ G +  +R+ DA   F  MPER+
Sbjct: 175 SWNGMLAAYVQNGRIEDARRLFESKADWELISWNCMMGGYVKRNRLVDARGIFDRMPERD 234

Query: 143 TATYNAMISGFLKHGRLEEATRLFEQMPRRNVISYTAMLDGFMKKGEVDKARALSDYMSF 202
             ++N MISG+ ++G L EA RLFE+ P R+V ++TAM+ G+++ G +D+AR + D M  
Sbjct: 235 EVSWNTMISGYAQNGELLEAQRLFEESPVRDVFTWTAMVSGYVQNGMLDEARRVFDGMPE 294

Query: 203 KNVVSWTVMITGYVKNERFCEARELFYRMPDYDKNVFVVTAMITGFCKVGMLENARLLFE 262
           KN VSW  +I GYV+ +R  +ARELF  MP   +NV     MITG+ + G +  AR  F+
Sbjct: 295 KNSVSWNAIIAGYVQCKRMDQARELFEAMPC--QNVSSWNTMITGYAQNGDIAQARNFFD 352

Query: 263 RIQPKDCVSFNAMIAGYAQNGVAEEALRLFSGMIKMDMQPDDATLVSVFTACSALQLLNE 322
           R+  +D +S+ A+IAGYAQ+G  EEAL LF  M +   + + +T  S  + C+ +  L  
Sbjct: 353 RMPQRDSISWAAIIAGYAQSGYGEEALHLFVEMKRDGERLNRSTFTSTLSTCAEIAALEL 412

Query: 323 GRQSHVLVIRNGFEANVSVCNAVITMYSRCGGILDSELAFRQIHSPNLVSWNTIIAAFAQ 382
           G+Q H  V++ G E+   V NA++ MY +CG I D+ + F  I    +VSWNT+IA +A+
Sbjct: 413 GKQVHGRVVKAGLESGCYVGNALLVMYCKCGNIDDAYIVFEGIEEKEVVSWNTMIAGYAR 472

Query: 383 HGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSE 442
           HG  ++AL+ F  M   G  PD +T + +LSAC H G V++  + F  M + YGI  +S+
Sbjct: 473 HGFGKEALMLFESMKKTGILPDDVTMVGVLSACSHTGLVDKGTEYFYSMTQDYGITANSK 532

Query: 443 HYTCLVDILSRAGQLEKAWQITQGMPFEADTGVWGSLLAACVINLNVELGELAAKKMREL 502
           HYTC++D+L RAG+L+ A  + + MPFE D   WG+LL A  I+ N ELGE AAK + E+
Sbjct: 533 HYTCMIDLLGRAGRLDDAQNLMKNMPFEPDAATWGALLGASRIHGNTELGEKAAKMIFEM 592

Query: 503 DPQNSAVYVMLSNLYAAAGMWRDVTRVRLLMKEQGVTKQCAYSWIEIGNKVHYFLGGDMS 562
           +P NS +YV+LSNLYAA+G W DV R+RL M+++GV K   YSW+E+ NK+H F  GD  
Sbjct: 593 EPDNSGMYVLLSNLYAASGRWGDVGRMRLRMRDRGVKKVPGYSWVEVQNKIHTFTVGDSV 652

Query: 563 HPCIDKIHLELKRASVQMK 581
           HP  D+I+  L+   ++MK
Sbjct: 653 HPERDRIYTFLEELDLKMK 671

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297734304|emb|CBI15551.3| unnamed protein product [Vitis vinifera]

 Score =  475 bits (1223), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 236/567 (41%), Positives = 349/567 (61%), Gaps = 33/567 (5%)

Query: 46  STQYVFVNNAKISALSRAGKISAARQLFDQMTTKDVITWNAIITGYWQNGFLQESKNLFQ 105
           S ++ F+    +    R   + AAR LFDQM  +DV++WNA+++GY QNG+++E+K +F 
Sbjct: 26  SPEFDFLERHDLRGCVRYRNLRAARLLFDQMPERDVVSWNAMLSGYAQNGYVKEAKEIFD 85

Query: 106 SMPVKN-------------------------------IVSWNCMIAGCIDNDRIDDAFDY 134
            MP KN                               ++SWNCM+ G +  +R+ DA   
Sbjct: 86  EMPCKNSISWNGMLAAYVQNGRIEDARRLFESKADWELISWNCMMGGYVKRNRLVDARGI 145

Query: 135 FQAMPERNTATYNAMISGFLKHGRLEEATRLFEQMPRRNVISYTAMLDGFMKKGEVDKAR 194
           F  MPER+  ++N MISG+ ++G L EA RLFE+ P R+V ++TAM+ G+++ G +D+AR
Sbjct: 146 FDRMPERDEVSWNTMISGYAQNGELLEAQRLFEESPVRDVFTWTAMVSGYVQNGMLDEAR 205

Query: 195 ALSDYMSFKNVVSWTVMITGYVKNERFCEARELFYRMPDYDKNVFVVTAMITGFCKVGML 254
            + D M  KN VSW  +I GYV+ +R  +ARELF  MP   +NV     MITG+ + G +
Sbjct: 206 RVFDGMPEKNSVSWNAIIAGYVQCKRMDQARELFEAMPC--QNVSSWNTMITGYAQNGDI 263

Query: 255 ENARLLFERIQPKDCVSFNAMIAGYAQNGVAEEALRLFSGMIKMDMQPDDATLVSVFTAC 314
             AR  F+R+  +D +S+ A+IAGYAQ+G  EEAL LF  M +   + + +T  S  + C
Sbjct: 264 AQARNFFDRMPQRDSISWAAIIAGYAQSGYGEEALHLFVEMKRDGERLNRSTFTSTLSTC 323

Query: 315 SALQLLNEGRQSHVLVIRNGFEANVSVCNAVITMYSRCGGILDSELAFRQIHSPNLVSWN 374
           + +  L  G+Q H  V++ G E+   V NA++ MY +CG I D+ + F  I    +VSWN
Sbjct: 324 AEIAALELGKQVHGRVVKAGLESGCYVGNALLVMYCKCGNIDDAYIVFEGIEEKEVVSWN 383

Query: 375 TIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMVKV 434
           T+IA +A+HG  ++AL+ F  M   G  PD +T + +LSAC H G V++  + F  M + 
Sbjct: 384 TMIAGYARHGFGKEALMLFESMKKTGILPDDVTMVGVLSACSHTGLVDKGTEYFYSMTQD 443

Query: 435 YGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMPFEADTGVWGSLLAACVINLNVELGEL 494
           YGI  +S+HYTC++D+L RAG+L+ A  + + MPFE D   WG+LL A  I+ N ELGE 
Sbjct: 444 YGITANSKHYTCMIDLLGRAGRLDDAQNLMKNMPFEPDAATWGALLGASRIHGNTELGEK 503

Query: 495 AAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRVRLLMKEQGVTKQCAYSWIEIGNKVH 554
           AAK + E++P NS +YV+LSNLYAA+G W DV R+RL M+++GV K   YSW+E+ NK+H
Sbjct: 504 AAKMIFEMEPDNSGMYVLLSNLYAASGRWGDVGRMRLRMRDRGVKKVPGYSWVEVQNKIH 563

Query: 555 YFLGGDMSHPCIDKIHLELKRASVQMK 581
            F  GD  HP  D+I+  L+   ++MK
Sbjct: 564 TFTVGDSVHPERDRIYTFLEELDLKMK 590

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	597
TAIR|locus:2140235	781	AT4G02750 [Arabidopsis thalian	0.881	0.673	0.399	2.3e-110
TAIR|locus:2012295	705	AT1G09410 [Arabidopsis thalian	0.889	0.753	0.386	2.2e-105
TAIR|locus:2044797	627	AT2G35030 [Arabidopsis thalian	0.891	0.848	0.388	2.5e-104
TAIR|locus:2027554	704	AT1G56690 [Arabidopsis thalian	0.889	0.754	0.378	1.4e-101
TAIR|locus:2038603	868	AT2G27610 "AT2G27610" [Arabido	0.882	0.607	0.349	3.2e-88
TAIR|locus:2124137	871	DOT4 "DEFECTIVELY ORGANIZED TR	0.886	0.607	0.336	3.3e-86
TAIR|locus:2151501	697	AT5G46460 [Arabidopsis thalian	0.889	0.761	0.338	3e-85
TAIR|locus:2118964	823	EMB2758 "embryo defective 2758	0.941	0.682	0.322	1.2e-81
TAIR|locus:2054131	697	SLO2 "AT2G13600" [Arabidopsis	0.772	0.661	0.381	1.5e-81
TAIR|locus:2055919	786	AT2G22070 "AT2G22070" [Arabido	0.835	0.634	0.351	1.4e-80

TAIR|locus:2140235 AT4G02750 [Arabidopsis thaliana (taxid:3702)]

 Score = 1090 (388.8 bits), Expect = 2.3e-110, P = 2.3e-110
 Identities = 211/528 (39%), Positives = 338/528 (64%)

Query:    54 NAKISALSRAGKISAARQLFDQMTTKDVITWNAIITGYWQNGFLQESKNLFQSMPVKNIV 113
             N  +S  ++ G +  AR +FD+M  K+ ++WNA+++ Y QN  ++E+  LF+S     +V
Sbjct:   161 NTMLSGYAQNGCVDDARSVFDRMPEKNDVSWNALLSAYVQNSKMEEACMLFKSRENWALV 220

Query:   114 SWNCMIAGCIDNDRIDDAFDYFQAMPERNTATYNAMISGFLKHGRLEEATRLFEQMPRRN 173
             SWNC++ G +   +I +A  +F +M  R+  ++N +I+G+ + G+++EA +LF++ P ++
Sbjct:   221 SWNCLLGGFVKKKKIVEARQFFDSMNVRDVVSWNTIITGYAQSGKIDEARQLFDESPVQD 280

Query:   174 VISYTAMLDGFMKKGEVDKARALSDYMSFKNVVSWTVMITGYVKNERFCEARELFYRMPD 233
             V ++TAM+ G+++   V++AR L D M  +N VSW  M+ GYV+ ER   A+ELF  MP 
Sbjct:   281 VFTWTAMVSGYIQNRMVEEARELFDKMPERNEVSWNAMLAGYVQGERMEMAKELFDVMPC 340

Query:   234 YDKNVFVVTAMITGFCKVGMLENARLLFERIQPKDCVSFNAMIAGYAQNGVAEEALRLFS 293
               +NV     MITG+ + G +  A+ LF+++  +D VS+ AMIAGY+Q+G + EALRLF 
Sbjct:   341 --RNVSTWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSFEALRLFV 398

Query:   294 GMIKMDMQPDDATLVSVFTACSALQLLNEGRQSHVLVIRNGFEANVSVCNAVITMYSRCG 353
              M +   + + ++  S  + C+ +  L  G+Q H  +++ G+E    V NA++ MY +CG
Sbjct:   399 QMEREGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCG 458

Query:   354 GILDSELAFRQIHSPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLS 413
              I ++   F+++   ++VSWNT+IA +++HG  E AL FF  M   G  PD  T +++LS
Sbjct:   459 SIEEANDLFKEMAGKDIVSWNTMIAGYSRHGFGEVALRFFESMKREGLKPDDATMVAVLS 518

Query:   414 ACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMPFEADT 473
             AC H G V++    F  M + YG++P+S+HY C+VD+L RAG LE A  + + MPFE D 
Sbjct:   519 ACSHTGLVDKGRQYFYTMTQDYGVMPNSQHYACMVDLLGRAGLLEDAHNLMKNMPFEPDA 578

Query:   474 GVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRVRLLM 533
              +WG+LL A  ++ N EL E AA K+  ++P+NS +YV+LSNLYA++G W DV ++R+ M
Sbjct:   579 AIWGTLLGASRVHGNTELAETAADKIFAMEPENSGMYVLLSNLYASSGRWGDVGKLRVRM 638

Query:   534 KEQGVTKQCAYSWIEIGNKVHYFLGGDMSHPCIDKIHLELKRASVQMK 581
             +++GV K   YSWIEI NK H F  GD  HP  D+I   L+   ++MK
Sbjct:   639 RDKGVKKVPGYSWIEIQNKTHTFSVGDEFHPEKDEIFAFLEELDLRMK 686

GO:0005739 "mitochondrion" evidence=ISM

TAIR|locus:2012295 AT1G09410 [Arabidopsis thaliana (taxid:3702)]

 Score = 1043 (372.2 bits), Expect = 2.2e-105, P = 2.2e-105
 Identities = 207/535 (38%), Positives = 325/535 (60%)

Query:    32 NFTPHSSNCLIRLFSTQYVFVNNAKISALSRAGKISAARQLFDQMTTKDVITWNAIITGY 91
             N  P  +  L      + +   N  +S   + G+I  AR++FD M  ++V++W A++ GY
Sbjct:    61 NLMPRDARKLFDEMPDRNIISWNGLVSGYMKNGEIDEARKVFDLMPERNVVSWTALVKGY 120

Query:    92 WQNGFLQESKNLFQSMPVKNIVSWNCMIAGCIDNDRIDDAFDYFQAMPERNTATYNAMIS 151
               NG +  +++LF  MP KN VSW  M+ G + + RIDDA   ++ +P+++     +MI 
Sbjct:   121 VHNGKVDVAESLFWKMPEKNKVSWTVMLIGFLQDGRIDDACKLYEMIPDKDNIARTSMIH 180

Query:   152 GFLKHGRLEEATRLFEQMPRRNVISYTAMLDGFMKKGEVDKARALSDYMSFKNVVSWTVM 211
             G  K GR++EA  +F++M  R+VI++T M+ G+ +   VD AR + D M  K  VSWT M
Sbjct:   181 GLCKEGRVDEAREIFDEMSERSVITWTTMVTGYGQNNRVDDARKIFDVMPEKTEVSWTSM 240

Query:   212 ITGYVKNERFCEARELFYRMPDYDKNVFVVTAMITGFCKVGMLENARLLFERIQPKDCVS 271
             + GYV+N R  +A ELF  MP   K V    AMI+G  + G +  AR +F+ ++ ++  S
Sbjct:   241 LMGYVQNGRIEDAEELFEVMPV--KPVIACNAMISGLGQKGEIAKARRVFDSMKERNDAS 298

Query:   272 FNAMIAGYAQNGVAEEALRLFSGMIKMDMQPDDATLVSVFTACSALQLLNEGRQSHVLVI 331
             +  +I  + +NG   EAL LF  M K  ++P   TL+S+ + C++L  L+ G+Q H  ++
Sbjct:   299 WQTVIKIHERNGFELEALDLFILMQKQGVRPTFPTLISILSVCASLASLHHGKQVHAQLV 358

Query:   332 RNGFEANVSVCNAVITMYSRCGGILDSELAFRQIHSPNLVSWNTIIAAFAQHGHYEKALI 391
             R  F+ +V V + ++TMY +CG ++ S+L F +  S +++ WN+II+ +A HG  E+AL 
Sbjct:   359 RCQFDVDVYVASVLMTMYIKCGELVKSKLIFDRFPSKDIIMWNSIISGYASHGLGEEALK 418

Query:   392 FFSQMGLNGFD-PDGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDI 450
              F +M L+G   P+ +TF++ LSAC +AG V E + ++E M  V+G+ P + HY C+VD+
Sbjct:   419 VFCEMPLSGSTKPNEVTFVATLSACSYAGMVEEGLKIYESMESVFGVKPITAHYACMVDM 478

Query:   451 LSRAGQLEKAWQITQGMPFEADTGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVY 510
             L RAG+  +A ++   M  E D  VWGSLL AC  +  +++ E  AKK+ E++P+NS  Y
Sbjct:   479 LGRAGRFNEAMEMIDSMTVEPDAAVWGSLLGACRTHSQLDVAEFCAKKLIEIEPENSGTY 538

Query:   511 VMLSNLYAAAGMWRDVTRVRLLMKEQGVTKQCAYSWIEIGNKVHYFL-GGDMSHP 564
             ++LSN+YA+ G W DV  +R LMK + V K    SW E+ NKVH F  GG  SHP
Sbjct:   539 ILLSNMYASQGRWADVAELRKLMKTRLVRKSPGCSWTEVENKVHAFTRGGINSHP 593

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2044797 AT2G35030 [Arabidopsis thaliana (taxid:3702)]

 Score = 1033 (368.7 bits), Expect = 2.5e-104, P = 2.5e-104
 Identities = 210/541 (38%), Positives = 333/541 (61%)

Query:    57 ISALSRAGKISAARQLFDQMTT-KDVITWNAIITGYWQNGFLQESKNLFQSMPVKNIVSW 115
             I+   + G +  AR+LFD++ + K+V+TW A+++GY ++  L  ++ LFQ MP +N+VSW
Sbjct:    84 ITGYIKLGDMREARELFDRVDSRKNVVTWTAMVSGYLRSKQLSIAEMLFQEMPERNVVSW 143

Query:   116 NCMIAGCIDNDRIDDAFDYFQAMPERNTATYNAMISGFLKHGRLEEATRLFEQMPRRNVI 175
             N MI G   + RID A + F  MPERN  ++N+M+   ++ GR++EA  LFE+MPRR+V+
Sbjct:   144 NTMIDGYAQSGRIDKALELFDEMPERNIVSWNSMVKALVQRGRIDEAMNLFERMPRRDVV 203

Query:   176 SYTAMLDGFMKKGEVDKARALSDYMSFKNVVSWTVMITGYVKNERFCEARELFYRMPDYD 235
             S+TAM+DG  K G+VD+AR L D M  +N++SW  MITGY +N R  EA +LF  MP+ D
Sbjct:   204 SWTAMVDGLAKNGKVDEARRLFDCMPERNIISWNAMITGYAQNNRIDEADQLFQVMPERD 263

Query:   236 KNVFVVTAMITGFCKVGMLENARLLFERIQPKDCVSFNAMIAGYAQNGVAEEALRLFSGM 295
                +    MITGF +   +  A  LF+R+  K+ +S+  MI GY +N   EEAL +FS M
Sbjct:   264 FASW--NTMITGFIRNREMNKACGLFDRMPEKNVISWTTMITGYVENKENEEALNVFSKM 321

Query:   296 IKM-DMQPDDATLVSVFTACSALQLLNEGRQSHVLVIRNGFEANVSVCNAVITMYSRCGG 354
             ++   ++P+  T VS+ +ACS L  L EG+Q H L+ ++  + N  V +A++ MYS+ G 
Sbjct:   322 LRDGSVKPNVGTYVSILSACSDLAGLVEGQQIHQLISKSVHQKNEIVTSALLNMYSKSGE 381

Query:   355 ILDSELAFRQ--IHSPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLL 412
             ++ +   F    +   +L+SWN++IA +A HGH ++A+  ++QM  +GF P  +T+L+LL
Sbjct:   382 LIAARKMFDNGLVCQRDLISWNSMIAVYAHHGHGKEAIEMYNQMRKHGFKPSAVTYLNLL 441

Query:   413 SACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMPFEAD 472
              AC HAG V + M+ F+ +V+   +    EHYTCLVD+  RAG+L+              
Sbjct:   442 FACSHAGLVEKGMEFFKDLVRDESLPLREEHYTCLVDLCGRAGRLKDVTNFINCDDARLS 501

Query:   473 TGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRVRLL 532
                +G++L+AC ++  V + +   KK+ E    ++  YV++SN+YAA G   +   +R+ 
Sbjct:   502 RSFYGAILSACNVHNEVSIAKEVVKKVLETGSDDAGTYVLMSNIYAANGKREEAAEMRMK 561

Query:   533 MKEQGVTKQCAYSWIEIGNKVHYFLGGDMSHP---CIDKIHLELKRASVQMKSVDDFVEI 589
             MKE+G+ KQ   SW+++G + H F+ GD SHP    +D I  +L+    + K+V    E 
Sbjct:   562 MKEKGLKKQPGCSWVKVGKQNHLFVVGDKSHPQFEALDSILSDLRNKMRKNKNVTSDAEE 621

Query:   590 A 590
             A
Sbjct:   622 A 622

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2027554 AT1G56690 [Arabidopsis thaliana (taxid:3702)]

 Score = 1007 (359.5 bits), Expect = 1.4e-101, P = 1.4e-101
 Identities = 202/534 (37%), Positives = 317/534 (59%)

Query:    32 NFTPHSSNCLIRLFSTQYVFVNNAKISALSRAGKISAARQLFDQMTTKDVITWNAIITGY 91
             N  P  +  L    S + V   N  +S   +   I  AR +F+ M  ++V++W A++ GY
Sbjct:    61 NGLPKEARQLFDEMSERNVVSWNGLVSGYIKNRMIVEARNVFELMPERNVVSWTAMVKGY 120

Query:    92 WQNGFLQESKNLFQSMPVKNIVSWNCMIAGCIDNDRIDDAFDYFQAMPERNTATYNAMIS 151
              Q G + E+++LF  MP +N VSW  M  G ID+ RID A   +  MP ++      MI 
Sbjct:   121 MQEGMVGEAESLFWRMPERNEVSWTVMFGGLIDDGRIDKARKLYDMMPVKDVVASTNMIG 180

Query:   152 GFLKHGRLEEATRLFEQMPRRNVISYTAMLDGFMKKGEVDKARALSDYMSFKNVVSWTVM 211
             G  + GR++EA  +F++M  RNV+++T M+ G+ +   VD AR L + M  K  VSWT M
Sbjct:   181 GLCREGRVDEARLIFDEMRERNVVTWTTMITGYRQNNRVDVARKLFEVMPEKTEVSWTSM 240

Query:   212 ITGYVKNERFCEARELFYRMPDYDKNVFVVTAMITGFCKVGMLENARLLFERIQPKDCVS 271
             + GY  + R  +A E F  MP   K V    AMI GF +VG +  AR +F+ ++ +D  +
Sbjct:   241 LLGYTLSGRIEDAEEFFEVMPM--KPVIACNAMIVGFGEVGEISKARRVFDLMEDRDNAT 298

Query:   272 FNAMIAGYAQNGVAEEALRLFSGMIKMDMQPDDATLVSVFTACSALQLLNEGRQSHVLVI 331
             +  MI  Y + G   EAL LF+ M K  ++P   +L+S+ + C+ L  L  GRQ H  ++
Sbjct:   299 WRGMIKAYERKGFELEALDLFAQMQKQGVRPSFPSLISILSVCATLASLQYGRQVHAHLV 358

Query:   332 RNGFEANVSVCNAVITMYSRCGGILDSELAFRQIHSPNLVSWNTIIAAFAQHGHYEKALI 391
             R  F+ +V V + ++TMY +CG ++ ++L F +  S +++ WN+II+ +A HG  E+AL 
Sbjct:   359 RCQFDDDVYVASVLMTMYVKCGELVKAKLVFDRFSSKDIIMWNSIISGYASHGLGEEALK 418

Query:   392 FFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDIL 451
              F +M  +G  P+ +T +++L+AC +AGK+ E +++FE M   + + P+ EHY+C VD+L
Sbjct:   419 IFHEMPSSGTMPNKVTLIAILTACSYAGKLEEGLEIFESMESKFCVTPTVEHYSCTVDML 478

Query:   452 SRAGQLEKAWQITQGMPFEADTGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYV 511
              RAGQ++KA ++ + M  + D  VWG+LL AC  +  ++L E+AAKK+ E +P N+  YV
Sbjct:   479 GRAGQVDKAMELIESMTIKPDATVWGALLGACKTHSRLDLAEVAAKKLFENEPDNAGTYV 538

Query:   512 MLSNLYAAAGMWRDVTRVRLLMKEQGVTKQCAYSWIEIGNKVHYFL-GGDMSHP 564
             +LS++ A+   W DV  VR  M+   V+K    SWIE+G KVH F  GG  +HP
Sbjct:   539 LLSSINASRSKWGDVAVVRKNMRTNNVSKFPGCSWIEVGKKVHMFTRGGIKNHP 592

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2038603 AT2G27610 "AT2G27610" [Arabidopsis thaliana (taxid:3702)]

 Score = 881 (315.2 bits), Expect = 3.2e-88, P = 3.2e-88
 Identities = 192/549 (34%), Positives = 330/549 (60%)

Query:    52 VNNAKISALSRAGKISAARQLFDQMTTKDVITWNAIITGYWQNGFLQESKNLFQSMPVKN 111
             V+N+ I+   + G +  AR LFD+   K V+TWN++I+GY  NG   E+  +F SM +  
Sbjct:   231 VSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLDLEALGMFYSMRLNY 290

Query:   112 I----VSWNCMIAGCID------NDRIDDAFDYFQAMPERNTATYNAMISGFLKHGRLEE 161
             +     S+  +I  C +       +++  +   +  + ++N  T  A++  + K   + +
Sbjct:   291 VRLSESSFASVIKLCANLKELRFTEQLHCSVVKYGFLFDQNIRT--ALMVAYSKCTAMLD 348

Query:   162 ATRLFEQMPR-RNVISYTAMLDGFMKKGEVDKARALSDYMSFKNV----VSWTVMITGY- 215
             A RLF+++    NV+S+TAM+ GF++    ++A  L   M  K V     +++V++T   
Sbjct:   349 ALRLFKEIGCVGNVVSWTAMISGFLQNDGKEEAVDLFSEMKRKGVRPNEFTYSVILTALP 408

Query:   216 VKNERFCEARELFYRMPDYDKNVFVVTAMITGFCKVGMLENARLLFERIQPKDCVSFNAM 275
             V +     A+ +     +Y+++  V TA++  + K+G +E A  +F  I  KD V+++AM
Sbjct:   409 VISPSEVHAQVV---KTNYERSSTVGTALLDAYVKLGKVEEAAKVFSGIDDKDIVAWSAM 465

Query:   276 IAGYAQNGVAEEALRLFSGMIKMDMQPDDATLVSVFTACSALQL-LNEGRQSHVLVIRNG 334
             +AGYAQ G  E A+++F  + K  ++P++ T  S+   C+A    + +G+Q H   I++ 
Sbjct:   466 LAGYAQTGETEAAIKMFGELTKGGIKPNEFTFSSILNVCAATNASMGQGKQFHGFAIKSR 525

Query:   335 FEANVSVCNAVITMYSRCGGILDSELAFRQIHSPNLVSWNTIIAAFAQHGHYEKALIFFS 394
              ++++ V +A++TMY++ G I  +E  F++    +LVSWN++I+ +AQHG   KAL  F 
Sbjct:   526 LDSSLCVSSALLTMYAKKGNIESAEEVFKRQREKDLVSWNSMISGYAQHGQAMKALDVFK 585

Query:   395 QMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRA 454
             +M       DG+TF+ + +AC HAG V E    F++MV+   I P+ EH +C+VD+ SRA
Sbjct:   586 EMKKRKVKMDGVTFIGVFAACTHAGLVEEGEKYFDIMVRDCKIAPTKEHNSCMVDLYSRA 645

Query:   455 GQLEKAWQITQGMPFEADTGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLS 514
             GQLEKA ++ + MP  A + +W ++LAAC ++   ELG LAA+K+  + P++SA YV+LS
Sbjct:   646 GQLEKAMKVIENMPNPAGSTIWRTILAACRVHKKTELGRLAAEKIIAMKPEDSAAYVLLS 705

Query:   515 NLYAAAGMWRDVTRVRLLMKEQGVTKQCAYSWIEIGNKVHYFLGGDMSHPCIDKIHLELK 574
             N+YA +G W++  +VR LM E+ V K+  YSWIE+ NK + FL GD SHP  D+I+++L+
Sbjct:   706 NMYAESGDWQERAKVRKLMNERNVKKEPGYSWIEVKNKTYSFLAGDRSHPLKDQIYMKLE 765

Query:   575 RASVQMKSV 583
               S ++K +
Sbjct:   766 DLSTRLKDL 774

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2124137 DOT4 "DEFECTIVELY ORGANIZED TRIBUTARIES 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 862 (308.5 bits), Expect = 3.3e-86, P = 3.3e-86
 Identities = 183/544 (33%), Positives = 316/544 (58%)

Query:    52 VNNAKISALSRAGKISAARQLFDQMTTKDVITWNAIITGYWQNGFLQESKNLFQSMPVKN 111
             V N+ ++   +  ++ +AR++FD+MT +DVI+WN+II GY  NG  ++  ++F  M V  
Sbjct:   232 VGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLVSG 291

Query:   112 I-VSWNCMI---AGCIDNDRID--DAFDYF--QAMPERNTATYNAMISGFLKHGRLEEAT 163
             I +    ++   AGC D+  I    A      +A   R     N ++  + K G L+ A 
Sbjct:   292 IEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAK 351

Query:   164 RLFEQMPRRNVISYTAMLDGFMKKGEVDKARALSDYMSFK----NVVSWTVMITGYVKNE 219
              +F +M  R+V+SYT+M+ G+ ++G   +A  L + M  +    +V + T ++    +  
Sbjct:   352 AVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYR 411

Query:   220 RFCEAREL--FYRMPDYDKNVFVVTAMITGFCKVGMLENARLLFERIQPKDCVSFNAMIA 277
                E + +  + +  D   ++FV  A++  + K G ++ A L+F  ++ KD +S+N +I 
Sbjct:   412 LLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRVKDIISWNTIIG 471

Query:   278 GYAQNGVAEEALRLFSGMIKMD-MQPDDATLVSVFTACSALQLLNEGRQSHVLVIRNGFE 336
             GY++N  A EAL LF+ +++     PD+ T+  V  AC++L   ++GR+ H  ++RNG+ 
Sbjct:   472 GYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGYF 531

Query:   337 ANVSVCNAVITMYSRCGGILDSELAFRQIHSPNLVSWNTIIAAFAQHGHYEKALIFFSQM 396
             ++  V N+++ MY++CG +L + + F  I S +LVSW  +IA +  HG  ++A+  F+QM
Sbjct:   532 SDRHVANSLVDMYAKCGALLLAHMLFDDIASKDLVSWTVMIAGYGMHGFGKEAIALFNQM 591

Query:   397 GLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQ 456
                G + D I+F+SLL AC H+G V+E    F +M     I P+ EHY C+VD+L+R G 
Sbjct:   592 RQAGIEADEISFVSLLYACSHSGLVDEGWRFFNIMRHECKIEPTVEHYACIVDMLARTGD 651

Query:   457 LEKAWQITQGMPFEADTGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNL 516
             L KA++  + MP   D  +WG+LL  C I+ +V+L E  A+K+ EL+P+N+  YV+++N+
Sbjct:   652 LIKAYRFIENMPIPPDATIWGALLCGCRIHHDVKLAEKVAEKVFELEPENTGYYVLMANI 711

Query:   517 YAAAGMWRDVTRVRLLMKEQGVTKQCAYSWIEIGNKVHYFLGGDMSHPCIDKIHLELKRA 576
             YA A  W  V R+R  + ++G+ K    SWIEI  +V+ F+ GD S+P  + I   L++ 
Sbjct:   712 YAEAEKWEQVKRLRKRIGQRGLRKNPGCSWIEIKGRVNIFVAGDSSNPETENIEAFLRKV 771

Query:   577 SVQM 580
               +M
Sbjct:   772 RARM 775

GO:0009507 "chloroplast" evidence=ISM

GO:0010087 "phloem or xylem histogenesis" evidence=IMP

GO:0010305 "leaf vascular tissue pattern formation" evidence=IMP

GO:0010588 "cotyledon vascular tissue pattern formation" evidence=IMP

GO:0048366 "leaf development" evidence=IMP

TAIR|locus:2151501 AT5G46460 [Arabidopsis thaliana (taxid:3702)]

 Score = 853 (305.3 bits), Expect = 3.0e-85, P = 3.0e-85
 Identities = 184/544 (33%), Positives = 317/544 (58%)

Query:    49 YVFVNNAKISALSRAGKISAARQLFDQMTTKDVITWNAIITGYWQNGFLQESKNLFQSMP 108
             +V +    I+  +R+ ++  A  LFD+M  +DV++WN++I+G  + G +  +  LF  MP
Sbjct:    65 HVSLYTKMITGYTRSNRLVDALNLFDEMPVRDVVSWNSMISGCVECGDMNTAVKLFDEMP 124

Query:   109 VKNIVSWNCMIAGCIDNDRIDDAFDYFQAMPERNTATYNAMISGFLKHGRLEEATRLFEQ 168
              +++VSW  M+ GC  + ++D A   F  MP ++TA +N+M+ G+L+ G++++A +LF+Q
Sbjct:   125 ERSVVSWTAMVNGCFRSGKVDQAERLFYQMPVKDTAAWNSMVHGYLQFGKVDDALKLFKQ 184

Query:   169 MPRRNVISYTAMLDGFMKKGEVDKARALSDYM---SFKNVVS-WTVMITGYVKNERF--- 221
             MP +NVIS+T M+ G  +     +A  L   M     K+    +T +IT       F   
Sbjct:   185 MPGKNVISWTTMICGLDQNERSGEALDLFKNMLRCCIKSTSRPFTCVITACANAPAFHMG 244

Query:   222 CEARELFYRMPD-YDKNVFVVTAMITGFCKVGMLENARLLFERIQPKDCVSFNAMIAGYA 280
              +   L  ++   Y++  +V  ++IT +     + ++R +F+    +    + A+++GY+
Sbjct:   245 IQVHGLIIKLGFLYEE--YVSASLITFYANCKRIGDSRKVFDEKVHEQVAVWTALLSGYS 302

Query:   281 QNGVAEEALRLFSGMIKMDMQPDDATLVSVFTACSALQLLNEGRQSHVLVIRNGFEANVS 340
              N   E+AL +FSGM++  + P+ +T  S   +CSAL  L+ G++ H + ++ G E +  
Sbjct:   303 LNKKHEDALSIFSGMLRNSILPNQSTFASGLNSCSALGTLDWGKEMHGVAVKLGLETDAF 362

Query:   341 VCNAVITMYSRCGGILDSELAFRQIHSPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNG 400
             V N+++ MYS  G + D+   F +I   ++VSWN+II   AQHG  + A + F QM    
Sbjct:   363 VGNSLVVMYSDSGNVNDAVSVFIKIFKKSIVSWNSIIVGCAQHGRGKWAFVIFGQMIRLN 422

Query:   401 FDPDGITFLSLLSACGHAGKVNESMDLFELMVK-VYGIIPSSEHYTCLVDILSRAGQLEK 459
              +PD ITF  LLSAC H G + +   LF  M   +  I    +HYTC+VDIL R G+L++
Sbjct:   423 KEPDEITFTGLLSACSHCGFLEKGRKLFYYMSSGINHIDRKIQHYTCMVDILGRCGKLKE 482

Query:   460 AWQITQGMPFEADTGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAA 519
             A ++ + M  + +  VW +LL+AC ++ +V+ GE AA  +  LD ++SA YV+LSN+YA+
Sbjct:   483 AEELIERMVVKPNEMVWLALLSACRMHSDVDRGEKAAAAIFNLDSKSSAAYVLLSNIYAS 542

Query:   520 AGMWRDVTRVRLLMKEQGVTKQCAYSWIEIGNKVHYFLGGDMSHPCIDKIHLELKRASVQ 579
             AG W +V+++R+ MK+ G+ K+   SW+ I  K H F  GD  H C  +I+ +L+    +
Sbjct:   543 AGRWSNVSKLRVKMKKNGIMKKPGSSWVVIRGKKHEFFSGDQPH-C-SRIYEKLEFLREK 600

Query:   580 MKSV 583
             +K +
Sbjct:   601 LKEL 604

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2118964 EMB2758 "embryo defective 2758" [Arabidopsis thaliana (taxid:3702)]

 Score = 819 (293.4 bits), Expect = 1.2e-81, P = 1.2e-81
 Identities = 187/580 (32%), Positives = 325/580 (56%)

Query:    17 FPPILRILSTPDSCGNFTPHSSNCLIRLFSTQY-VFVNNAKISALSRAGKISAARQLFDQ 75
             FP +L+   T    GN      +CL   F   + V+V  + I   SR   +  AR LFD+
Sbjct:   156 FPSVLKACRTVID-GN----KIHCLALKFGFMWDVYVAASLIHLYSRYKAVGNARILFDE 210

Query:    76 MTTKDVITWNAIITGYWQNGFLQESKNLFQSMPVKNIVSWNCMIAGCI---DNDRIDDAF 132
             M  +D+ +WNA+I+GY Q+G  +E+  L   +   + V+   +++ C    D +R     
Sbjct:   211 MPVRDMGSWNAMISGYCQSGNAKEALTLSNGLRAMDSVTVVSLLSACTEAGDFNRGVTIH 270

Query:   133 DY-FQAMPERNTATYNAMISGFLKHGRLEEATRLFEQMPRRNVISYTAMLDGFMKKGEVD 191
              Y  +   E      N +I  + + GRL +  ++F++M  R++IS+ +++  +    +  
Sbjct:   271 SYSIKHGLESELFVSNKLIDLYAEFGRLRDCQKVFDRMYVRDLISWNSIIKAYELNEQPL 330

Query:   192 KARALSDYMSFKNVVS--WTVMITGYVKNE----RFCEARELF-YRMPDYDKNVFVVTAM 244
             +A +L   M    +     T++    + ++    R C + + F  R   + +++ +  A+
Sbjct:   331 RAISLFQEMRLSRIQPDCLTLISLASILSQLGDIRACRSVQGFTLRKGWFLEDITIGNAV 390

Query:   245 ITGFCKVGMLENARLLFERIQPKDCVSFNAMIAGYAQNGVAEEALRLFSGMIKM-DMQPD 303
             +  + K+G++++AR +F  +   D +S+N +I+GYAQNG A EA+ +++ M +  ++  +
Sbjct:   391 VVMYAKLGLVDSARAVFNWLPNTDVISWNTIISGYAQNGFASEAIEMYNIMEEEGEIAAN 450

Query:   304 DATLVSVFTACSALQLLNEGRQSHVLVIRNGFEANVSVCNAVITMYSRCGGILDSELAFR 363
               T VSV  ACS    L +G + H  +++NG   +V V  ++  MY +CG + D+   F 
Sbjct:   451 QGTWVSVLPACSQAGALRQGMKLHGRLLKNGLYLDVFVVTSLADMYGKCGRLEDALSLFY 510

Query:   364 QIHSPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNE 423
             QI   N V WNT+IA    HGH EKA++ F +M   G  PD ITF++LLSAC H+G V+E
Sbjct:   511 QIPRVNSVPWNTLIACHGFHGHGEKAVMLFKEMLDEGVKPDHITFVTLLSACSHSGLVDE 570

Query:   424 SMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMPFEADTGVWGSLLAAC 483
                 FE+M   YGI PS +HY C+VD+  RAGQLE A +  + M  + D  +WG+LL+AC
Sbjct:   571 GQWCFEMMQTDYGITPSLKHYGCMVDMYGRAGQLETALKFIKSMSLQPDASIWGALLSAC 630

Query:   484 VINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRVRLLMKEQGVTKQCA 543
              ++ NV+LG++A++ + E++P++   +V+LSN+YA+AG W  V  +R +   +G+ K   
Sbjct:   631 RVHGNVDLGKIASEHLFEVEPEHVGYHVLLSNMYASAGKWEGVDEIRSIAHGKGLRKTPG 690

Query:   544 YSWIEIGNKVHYFLGGDMSHPCIDKIHLELKRASVQMKSV 583
             +S +E+ NKV  F  G+ +HP  ++++ EL     ++K +
Sbjct:   691 WSSMEVDNKVEVFYTGNQTHPMYEEMYRELTALQAKLKMI 730

GO:0005739 "mitochondrion" evidence=ISM

GO:0009793 "embryo development ending in seed dormancy" evidence=NAS

TAIR|locus:2054131 SLO2 "AT2G13600" [Arabidopsis thaliana (taxid:3702)]

 Score = 818 (293.0 bits), Expect = 1.5e-81, P = 1.5e-81
 Identities = 183/480 (38%), Positives = 278/480 (57%)

Query:   128 IDDAFDYFQAMPERNTATYNAMISGFLKHGRLEEATRLFEQM------PRR----NVISY 177
             ++DA   F  M +RN  ++N++I+ F ++G   EA  +F+ M      P      +VIS 
Sbjct:   203 VNDAQRVFDEMGDRNVVSWNSLITCFEQNGPAVEALDVFQMMLESRVEPDEVTLASVISA 262

Query:   178 TAMLDGFMKKGEVDKARALSDYMSFKNVVSWTVMITGYVKNERFCEARELFYRMPDYDKN 237
              A L   +K G+    R + +     +++     +  Y K  R  EAR +F  MP   +N
Sbjct:   263 CASLSA-IKVGQEVHGRVVKNDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMPI--RN 319

Query:   238 VFVVTAMITGFCKVGMLENARLLFERIQPKDCVSFNAMIAGYAQNGVAEEALRLFSGMIK 297
             V   T+MI+G+      + ARL+F ++  ++ VS+NA+IAGY QNG  EEAL LF  + +
Sbjct:   320 VIAETSMISGYAMAASTKAARLMFTKMAERNVVSWNALIAGYTQNGENEEALSLFCLLKR 379

Query:   298 MDMQPDDATLVSVFTACSALQLLNEGRQSHVLVIRNGF------EANVSVCNAVITMYSR 351
               + P   +  ++  AC+ L  L+ G Q+HV V+++GF      E ++ V N++I MY +
Sbjct:   380 ESVCPTHYSFANILKACADLAELHLGMQAHVHVLKHGFKFQSGEEDDIFVGNSLIDMYVK 439

Query:   352 CGGILDSELAFRQIHSPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSL 411
             CG + +  L FR++   + VSWN +I  FAQ+G+  +AL  F +M  +G  PD IT + +
Sbjct:   440 CGCVEEGYLVFRKMMERDCVSWNAMIIGFAQNGYGNEALELFREMLESGEKPDHITMIGV 499

Query:   412 LSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMPFEA 471
             LSACGHAG V E    F  M + +G+ P  +HYTC+VD+L RAG LE+A  + + MP + 
Sbjct:   500 LSACGHAGFVEEGRHYFSSMTRDFGVAPLRDHYTCMVDLLGRAGFLEEAKSMIEEMPMQP 559

Query:   472 DTGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRVRL 531
             D+ +WGSLLAAC ++ N+ LG+  A+K+ E++P NS  YV+LSN+YA  G W DV  VR 
Sbjct:   560 DSVIWGSLLAACKVHRNITLGKYVAEKLLEVEPSNSGPYVLLSNMYAELGKWEDVMNVRK 619

Query:   532 LMKEQGVTKQCAYSWIEIGNKVHYFLGGDMSHPCIDKIHLELKRASVQMKSVDDFVEIAT 591
              M+++GVTKQ   SWI+I    H F+  D SHP   +IH  L     +M+   D  EI +
Sbjct:   620 SMRKEGVTKQPGCSWIKIQGHDHVFMVKDKSHPRKKQIHSLLDILIAEMRPEQDHTEIGS 679

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0010182 "sugar mediated signaling pathway" evidence=IMP

GO:0080156 "mitochondrial mRNA modification" evidence=IMP

TAIR|locus:2055919 AT2G22070 "AT2G22070" [Arabidopsis thaliana (taxid:3702)]

 Score = 809 (289.8 bits), Expect = 1.4e-80, P = 1.4e-80
 Identities = 179/509 (35%), Positives = 290/509 (56%)

Query:    85 NAIITGYWQNGFLQESKNLFQSMPVKNIVSWNCMIAGCIDNDRIDDAFDYFQAMPERNTA 144
             N+++  Y + G    +K +F  M V++I SWN MIA  +   ++D A   F+ M ER+  
Sbjct:   185 NSLLNMYAKCGDPMMAKFVFDRMVVRDISSWNAMIALHMQVGQMDLAMAQFEQMAERDIV 244

Query:   145 TYNAMISGFLKHGRLEEATRLFEQMPRRNVISYTAMLDGFMKKGEVDKARALSDYMSFKN 204
             T+N+MISGF + G    A  +F +M R +++S        +     +  +         +
Sbjct:   245 TWNSMISGFNQRGYDLRALDIFSKMLRDSLLSPDRFTLASVLSACANLEKLCIGKQIHSH 304

Query:   205 VVSWTVMITGYVKNERF-----C----EARELFYRMPDYDKNVFVVTAMITGFCKVGMLE 255
             +V+    I+G V N        C     AR L  +    D  +   TA++ G+ K+G + 
Sbjct:   305 IVTTGFDISGIVLNALISMYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIKLGDMN 364

Query:   256 NARLLFERIQPKDCVSFNAMIAGYAQNGVAEEALRLFSGMIKMDMQPDDATLVSVFTACS 315
              A+ +F  ++ +D V++ AMI GY Q+G   EA+ LF  M+    +P+  TL ++ +  S
Sbjct:   365 QAKNIFVSLKDRDVVAWTAMIVGYEQHGSYGEAINLFRSMVGGGQRPNSYTLAAMLSVAS 424

Query:   316 ALQLLNEGRQSHVLVIRNGFEANVSVCNAVITMYSRCGGILDSELAFRQIHSP-NLVSWN 374
             +L  L+ G+Q H   +++G   +VSV NA+ITMY++ G I  +  AF  I    + VSW 
Sbjct:   425 SLASLSHGKQIHGSAVKSGEIYSVSVSNALITMYAKAGNITSASRAFDLIRCERDTVSWT 484

Query:   375 TIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMVKV 434
             ++I A AQHGH E+AL  F  M + G  PD IT++ + SAC HAG VN+    F++M  V
Sbjct:   485 SMIIALAQHGHAEEALELFETMLMEGLRPDHITYVGVFSACTHAGLVNQGRQYFDMMKDV 544

Query:   435 YGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMPFEADTGVWGSLLAACVINLNVELGEL 494
               IIP+  HY C+VD+  RAG L++A +  + MP E D   WGSLL+AC ++ N++LG++
Sbjct:   545 DKIIPTLSHYACMVDLFGRAGLLQEAQEFIEKMPIEPDVVTWGSLLSACRVHKNIDLGKV 604

Query:   495 AAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRVRLLMKEQGVTKQCAYSWIEIGNKVH 554
             AA+++  L+P+NS  Y  L+NLY+A G W +  ++R  MK+  V K+  +SWIE+ +KVH
Sbjct:   605 AAERLLLLEPENSGAYSALANLYSACGKWEEAAKIRKSMKDGRVKKEQGFSWIEVKHKVH 664

Query:   555 YFLGGDMSHPCIDKIHLELKRASVQMKSV 583
              F   D +HP  ++I++ +K+   ++K +
Sbjct:   665 VFGVEDGTHPEKNEIYMTMKKIWDEIKKM 693

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	597
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	1e-113
PLN03081	697	PLN03081, PLN03081, pentatricopeptide (PPR) repeat	1e-77
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	2e-57
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	3e-54
PLN03081	697	PLN03081, PLN03081, pentatricopeptide (PPR) repeat	9e-32
PLN03081	697	PLN03081, PLN03081, pentatricopeptide (PPR) repeat	9e-28
PLN03081	697	PLN03081, PLN03081, pentatricopeptide (PPR) repeat	5e-19
PLN03081	697	PLN03081, PLN03081, pentatricopeptide (PPR) repeat	4e-17
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	6e-14
pfam13041	50	pfam13041, PPR_2, PPR repeat family	3e-12
pfam13041	50	pfam13041, PPR_2, PPR repeat family	1e-10
PLN03218	1060	PLN03218, PLN03218, maturation of RBCL 1; Provisio	2e-10
PLN03081	697	PLN03081, PLN03081, pentatricopeptide (PPR) repeat	6e-10
pfam13041	50	pfam13041, PPR_2, PPR repeat family	7e-10
PLN03218	1060	PLN03218, PLN03218, maturation of RBCL 1; Provisio	1e-09
PLN03218	1060	PLN03218, PLN03218, maturation of RBCL 1; Provisio	5e-09
pfam13041	50	pfam13041, PPR_2, PPR repeat family	9e-08
pfam13041	50	pfam13041, PPR_2, PPR repeat family	2e-07
pfam13041	50	pfam13041, PPR_2, PPR repeat family	4e-07
pfam12854	34	pfam12854, PPR_1, PPR repeat	4e-07
pfam01535	31	pfam01535, PPR, PPR repeat	1e-06
PLN03218	1060	PLN03218, PLN03218, maturation of RBCL 1; Provisio	4e-06
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	9e-06
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	6e-05
pfam13041	50	pfam13041, PPR_2, PPR repeat family	1e-04
pfam01535	31	pfam01535, PPR, PPR repeat	2e-04
pfam13812	34	pfam13812, PPR_3, Pentatricopeptide repeat domain	2e-04
pfam01535	31	pfam01535, PPR, PPR repeat	4e-04
pfam13041	50	pfam13041, PPR_2, PPR repeat family	6e-04
pfam01535	31	pfam01535, PPR, PPR repeat	6e-04
pfam13041	50	pfam13041, PPR_2, PPR repeat family	8e-04
pfam12854	34	pfam12854, PPR_1, PPR repeat	0.001
pfam12854	34	pfam12854, PPR_1, PPR repeat	0.001
pfam12854	34	pfam12854, PPR_1, PPR repeat	0.003

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score =  358 bits (919), Expect = e-113
 Identities = 189/567 (33%), Positives = 297/567 (52%), Gaps = 54/567 (9%)

Query: 50  VFVNNAKISALSRAGKISAARQLFDQMTTKDVITWNAIITGYWQNGFLQESKNLFQSM-- 107
           V V NA I+   + G + +AR +FD+M  +D I+WNA+I+GY++NG   E   LF +M  
Sbjct: 222 VDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRE 281

Query: 108 ----PVKNIVSWNCMIAGC-IDNDR----------IDDAFDYFQAMPERNTATYNAMISG 152
               P  ++++   +I+ C +  D           +   F         + +  N++I  
Sbjct: 282 LSVDP--DLMTITSVISACELLGDERLGREMHGYVVKTGFAV-------DVSVCNSLIQM 332

Query: 153 FLKHGRLEEATRLFEQMPRRNVISYTAMLDGFMKKGEVDKARALSDYMSFKNVVSWTVMI 212
           +L  G   EA ++F +M  ++ +S+TAM+ G+ K G  DKA      M   NV    + I
Sbjct: 333 YLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITI 392

Query: 213 --------------TGYVKNERFCEARELFYRMPDYDKNVFVVTAMITGFCKVGMLENAR 258
                          G   +E       + Y        V V  A+I  + K   ++ A 
Sbjct: 393 ASVLSACACLGDLDVGVKLHELAERKGLISY--------VVVANALIEMYSKCKCIDKAL 444

Query: 259 LLFERIQPKDCVSFNAMIAGYAQNGVAEEALRLFSGMIKMDMQPDDATLVSVFTACSALQ 318
            +F  I  KD +S+ ++IAG   N    EAL  F  M+ + ++P+  TL++  +AC+ + 
Sbjct: 445 EVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQML-LTLKPNSVTLIAALSACARIG 503

Query: 319 LLNEGRQSHVLVIRNGFEANVSVCNAVITMYSRCGGILDSELAFRQ--IHSPNLVSWNTI 376
            L  G++ H  V+R G   +  + NA++ +Y RCG       A+ Q   H  ++VSWN +
Sbjct: 504 ALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCG---RMNYAWNQFNSHEKDVVSWNIL 560

Query: 377 IAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMVKVYG 436
           +  +  HG    A+  F++M  +G +PD +TF+SLL AC  +G V + ++ F  M + Y 
Sbjct: 561 LTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYS 620

Query: 437 IIPSSEHYTCLVDILSRAGQLEKAWQITQGMPFEADTGVWGSLLAACVINLNVELGELAA 496
           I P+ +HY C+VD+L RAG+L +A+     MP   D  VWG+LL AC I+ +VELGELAA
Sbjct: 621 ITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAA 680

Query: 497 KKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRVRLLMKEQGVTKQCAYSWIEIGNKVHYF 556
           + + ELDP +   Y++L NLYA AG W +V RVR  M+E G+T     SW+E+  KVH F
Sbjct: 681 QHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAF 740

Query: 557 LGGDMSHPCIDKIHLELKRASVQMKSV 583
           L  D SHP I +I+  L+    +MK+ 
Sbjct: 741 LTDDESHPQIKEINTVLEGFYEKMKAS 767

Length = 857

>gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional

 Score =  259 bits (664), Expect = 1e-77
 Identities = 142/445 (31%), Positives = 230/445 (51%), Gaps = 41/445 (9%)

Query: 128 IDDAFDYFQAMPERNTATYNAMISGFLKHGRLEEATRLFEQM--------PRRNVISYTA 179
           + DA   F  MPERN A++  +I G +  G   EA  LF +M        PR    ++  
Sbjct: 174 LIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPR----TFVV 229

Query: 180 MLDGFMKKGEVDKARALSDYMSFKNVVSWTVMITGYVKNERFCEARELFYRMPDYDKNVF 239
           ML      G     + L             V+ TG V +                    F
Sbjct: 230 MLRASAGLGSARAGQQLHC----------CVLKTGVVGD-------------------TF 260

Query: 240 VVTAMITGFCKVGMLENARLLFERIQPKDCVSFNAMIAGYAQNGVAEEALRLFSGMIKMD 299
           V  A+I  + K G +E+AR +F+ +  K  V++N+M+AGYA +G +EEAL L+  M    
Sbjct: 261 VSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSG 320

Query: 300 MQPDDATLVSVFTACSALQLLNEGRQSHVLVIRNGFEANVSVCNAVITMYSRCGGILDSE 359
           +  D  T   +    S L LL   +Q+H  +IR GF  ++    A++ +YS+ G + D+ 
Sbjct: 321 VSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDAR 380

Query: 360 LAFRQIHSPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAG 419
             F ++   NL+SWN +IA +  HG   KA+  F +M   G  P+ +TFL++LSAC ++G
Sbjct: 381 NVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSG 440

Query: 420 KVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMPFEADTGVWGSL 479
              +  ++F+ M + + I P + HY C++++L R G L++A+ + +  PF+    +W +L
Sbjct: 441 LSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAAL 500

Query: 480 LAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRVRLLMKEQGVT 539
           L AC I+ N+ELG LAA+K+  + P+    YV+L NLY ++G   +  +V   +K +G++
Sbjct: 501 LTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLS 560

Query: 540 KQCAYSWIEIGNKVHYFLGGDMSHP 564
              A +WIE+  + H F  GD  HP
Sbjct: 561 MHPACTWIEVKKQDHSFFSGDRLHP 585

Length = 697

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score =  207 bits (527), Expect = 2e-57
 Identities = 122/424 (28%), Positives = 217/424 (51%), Gaps = 32/424 (7%)

Query: 85  NAIITGYWQNGFLQESKNLFQSMP-VKNIVSWNCMIA--GCIDNDRIDDAFDYFQAMPER 141
           N+ +     +G L+++  L +SM  ++  V  +  +A     +  R  +      +    
Sbjct: 55  NSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALS 114

Query: 142 NTATY-----NAMISGFLKHGRLEEATRLFEQMPRRNVISYTAMLDGFMKKGEVDKARAL 196
           +  +      NAM+S F++ G L  A  +F +MP R++ S+  ++ G+ K G  D+A  L
Sbjct: 115 SHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCL 174

Query: 197 ----------SDYMSFKNVVSWTVMITGYVKNERFCEARELFYRMPDYDKNVFVVTAMIT 246
                      D  +F  V+     I    +  R   A  + +    ++ +V VV A+IT
Sbjct: 175 YHRMLWAGVRPDVYTFPCVLRTCGGIPDLARG-REVHAHVVRF---GFELDVDVVNALIT 230

Query: 247 GFCKVGMLENARLLFERIQPKDCVSFNAMIAGYAQNGVAEEALRLFSGMIKMDMQPDDAT 306
            + K G + +ARL+F+R+  +DC+S+NAMI+GY +NG   E L LF  M ++ + PD  T
Sbjct: 231 MYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMT 290

Query: 307 LVSVFTACSALQLLNEGRQSHVLVIRNGFEANVSVCNAVITMYSRCGGILDSELAFRQIH 366
           + SV +AC  L     GR+ H  V++ GF  +VSVCN++I MY   G   ++E  F ++ 
Sbjct: 291 ITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME 350

Query: 367 SPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMD 426
           + + VSW  +I+ + ++G  +KAL  ++ M  +   PD IT  S+LSAC   G ++  + 
Sbjct: 351 TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVK 410

Query: 427 LFELMVKV----YGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMPFEADTGVWGSLLAA 482
           L EL  +     Y ++ ++     L+++ S+   ++KA ++   +P E D   W S++A 
Sbjct: 411 LHELAERKGLISYVVVANA-----LIEMYSKCKCIDKALEVFHNIP-EKDVISWTSIIAG 464

Query: 483 CVIN 486
             +N
Sbjct: 465 LRLN 468

Length = 857

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score =  197 bits (503), Expect = 3e-54
 Identities = 132/455 (29%), Positives = 229/455 (50%), Gaps = 44/455 (9%)

Query: 54  NAKISALSRAGKISAARQLFDQMTTKDVITWNAIITGYWQNGFLQESKNLFQSM---PVK 110
           NA +S   R G++  A  +F +M  +D+ +WN ++ GY + G+  E+  L+  M    V+
Sbjct: 125 NAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVR 184

Query: 111 -NIVSWNCMI---AGCIDNDRIDDA------FDYFQAMPERNTATYNAMISGFLKHGRLE 160
            ++ ++ C++    G  D  R  +       F +     E +    NA+I+ ++K G + 
Sbjct: 185 PDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGF-----ELDVDVVNALITMYVKCGDVV 239

Query: 161 EATRLFEQMPRRNVISYTAMLDGFMKKGEVDKA-------RALS---DYMSFKNVVSWTV 210
            A  +F++MPRR+ IS+ AM+ G+ + GE  +        R LS   D M+  +V+S   
Sbjct: 240 SARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVIS--- 296

Query: 211 MITGYVKNERFCEARELFYRMPDYDKNVFVVTAMITGFCKVGMLENARLLFERIQPKDCV 270
                + +ER       +     +  +V V  ++I  +  +G    A  +F R++ KD V
Sbjct: 297 -ACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAV 355

Query: 271 SFNAMIAGYAQNGVAEEALRLFSGMIKMDMQPDDATLVSVFTACSALQLLNEGRQSHVLV 330
           S+ AMI+GY +NG+ ++AL  ++ M + ++ PD+ T+ SV +AC+ L  L+ G + H L 
Sbjct: 356 SWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELA 415

Query: 331 IRNGFEANVSVCNAVITMYSRCGGILDSELAFRQIHSPNLVSWNTIIAAFAQHGHYEKAL 390
            R G  + V V NA+I MYS+C  I  +   F  I   +++SW +IIA    +    +AL
Sbjct: 416 ERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEAL 475

Query: 391 IFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMVKV----YGIIPSSEHYTC 446
           IFF QM L    P+ +T ++ LSAC   G +    ++   +++      G +P++     
Sbjct: 476 IFFRQMLLT-LKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNA----- 529

Query: 447 LVDILSRAGQLEKAWQITQGMPFEADTGVWGSLLA 481
           L+D+  R G++  AW   Q    E D   W  LL 
Sbjct: 530 LLDLYVRCGRMNYAW--NQFNSHEKDVVSWNILLT 562

Length = 857

>gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional

 Score =  130 bits (328), Expect = 9e-32
 Identities = 103/429 (24%), Positives = 181/429 (42%), Gaps = 56/429 (13%)

Query: 54  NAKISALSRAGKISAARQLFDQMTTK----DVITWNAIITGYWQNGFLQESKNLFQSMPV 109
           +A + A      I   + ++  + +     D    N ++  + + G L +++ LF  MP 
Sbjct: 127 DALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPE 186

Query: 110 KNIVSWNCMIAGCIDNDRIDDAFDYFQAMPER----NTATYNAMISGFLKHGRLEEATRL 165
           +N+ SW  +I G +D     +AF  F+ M E        T+  M+      G      +L
Sbjct: 187 RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQL 246

Query: 166 FEQMPRRNVISYT----AMLDGFMKKGEVDKARALSDYMSFKNVVSWTVMITGYVKNERF 221
              + +  V+  T    A++D + K G+++ AR + D M  K  V+W  M+ GY  +   
Sbjct: 247 HCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYS 306

Query: 222 CEARELFYRMPD--YDKNVFVVTAMI---------------------TGF---------- 248
            EA  L+Y M D     + F  + MI                     TGF          
Sbjct: 307 EEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTAL 366

Query: 249 ----CKVGMLENARLLFERIQPKDCVSFNAMIAGYAQNGVAEEALRLFSGMIKMDMQPDD 304
                K G +E+AR +F+R+  K+ +S+NA+IAGY  +G   +A+ +F  MI   + P+ 
Sbjct: 367 VDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNH 426

Query: 305 ATLVSVFTACSALQLLNEGRQSHVLVIRN-GFEANVSVCNAVITMYSRCGGILDSELAF- 362
            T ++V +AC    L  +G +    +  N   +        +I +  R  G+LD   A  
Sbjct: 427 VTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGR-EGLLDEAYAMI 485

Query: 363 -RQIHSPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGI-TFLSLLSACGHAGK 420
            R    P +  W  ++ A   H + E  L   +   L G  P+ +  ++ LL+    +G+
Sbjct: 486 RRAPFKPTVNMWAALLTACRIHKNLE--LGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGR 543

Query: 421 VNESMDLFE 429
             E+  + E
Sbjct: 544 QAEAAKVVE 552

Length = 697

>gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional

 Score =  118 bits (296), Expect = 9e-28
 Identities = 63/219 (28%), Positives = 104/219 (47%), Gaps = 1/219 (0%)

Query: 250 KVGMLENARLLFERIQPKDCVSFNAMIAGYAQNGVAEEALRLFSGMIKMDMQPDDATLVS 309
           K GML +AR LF+ +  ++  S+  +I G    G   EA  LF  M +     +  T V 
Sbjct: 170 KCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVV 229

Query: 310 VFTACSALQLLNEGRQSHVLVIRNGFEANVSVCNAVITMYSRCGGILDSELAFRQIHSPN 369
           +  A + L     G+Q H  V++ G   +  V  A+I MYS+CG I D+   F  +    
Sbjct: 230 MLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKT 289

Query: 370 LVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFE 429
            V+WN+++A +A HG+ E+AL  + +M  +G   D  TF  ++        +  +     
Sbjct: 290 TVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHA 349

Query: 430 LMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMP 468
            +++  G        T LVD+ S+ G++E A  +   MP
Sbjct: 350 GLIR-TGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP 387

Length = 697

>gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional

 Score = 90.7 bits (225), Expect = 5e-19
 Identities = 69/269 (25%), Positives = 124/269 (46%), Gaps = 50/269 (18%)

Query: 40  CLIRLFSTQYVFVNNAKISALSRAGKISAARQLFDQMTTKDVITWNAIITGYWQNGFLQE 99
           C+++       FV+ A I   S+ G I  AR +FD M  K  + WN+++ GY  +G+ +E
Sbjct: 249 CVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEE 308

Query: 100 SKNLFQSMPVKNIVSWNCMIAGCIDNDRIDDAFDYFQAMPERNTATYNAMISGFLKHGRL 159
           +  L+  M    +                  + D F         T++ MI  F +   L
Sbjct: 309 ALCLYYEMRDSGV------------------SIDQF---------TFSIMIRIFSRLALL 341

Query: 160 EEATRLFEQMPRR----NVISYTAMLDGFMKKGEVDKARALSDYMSFKNVVSWTVMITGY 215
           E A +    + R     ++++ TA++D + K G ++ AR + D M  KN++SW  +I GY
Sbjct: 342 EHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGY 401

Query: 216 VKNERFCEARELFYRM------PDYDKNVFVVTAMITGFCKV-GMLENARLLFE------ 262
             + R  +A E+F RM      P++   + V++A     C+  G+ E    +F+      
Sbjct: 402 GNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSA-----CRYSGLSEQGWEIFQSMSENH 456

Query: 263 RIQPKDCVSFNAMIAGYAQNGVAEEALRL 291
           RI+P+  + +  MI    + G+ +EA  +
Sbjct: 457 RIKPR-AMHYACMIELLGREGLLDEAYAM 484

Length = 697

>gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional

 Score = 84.9 bits (210), Expect = 4e-17
 Identities = 66/221 (29%), Positives = 102/221 (46%), Gaps = 11/221 (4%)

Query: 267 KDCVSFNAMIAGYAQNGVAEEALRLFSGM-----IKMDMQPDDATLVSVFTACSALQLLN 321
           K  VS  + I      G   EAL LF  +       +     DA LV    AC AL+ + 
Sbjct: 85  KSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDA-LVE---ACIALKSIR 140

Query: 322 EGRQSHVLVIRNGFEANVSVCNAVITMYSRCGGILDSELAFRQIHSPNLVSWNTIIAAFA 381
             +  +  V  +GFE +  + N V+ M+ +CG ++D+   F ++   NL SW TII    
Sbjct: 141 CVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLV 200

Query: 382 QHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSS 441
             G+Y +A   F +M  +G D +  TF+ +L A    G       L   ++K  G++  +
Sbjct: 201 DAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKT-GVVGDT 259

Query: 442 EHYTCLVDILSRAGQLEKAWQITQGMPFEADTGVWGSLLAA 482
                L+D+ S+ G +E A  +  GMP E  T  W S+LA 
Sbjct: 260 FVSCALIDMYSKCGDIEDARCVFDGMP-EKTTVAWNSMLAG 299

Length = 697

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score = 74.9 bits (184), Expect = 6e-14
 Identities = 62/297 (20%), Positives = 123/297 (41%), Gaps = 46/297 (15%)

Query: 273 NAMIAGYAQNGVAEEALRLFSGMIKMDMQPDDATLVSVFTACSALQLLNEGRQSHVLVIR 332
           N+ +     +G  E+AL+L   M ++ +  D+   V++F  C   + + EG +     + 
Sbjct: 55  NSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALS 114

Query: 333 NGFEANVSVCNAVITMYSRCGGILDSELAFRQIHSPNLVSWNTIIAAFAQHGHYEKALIF 392
           +     V + NA+++M+ R G ++ +   F ++   +L SWN ++  +A+ G++++AL  
Sbjct: 115 SHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCL 174

Query: 393 FSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLF---ELMVKV--YGIIPSSEHYTCL 447
           + +M   G  PD  TF  +L  CG         DL    E+   V  +G     +    L
Sbjct: 175 YHRMLWAGVRPDVYTFPCVLRTCGGI------PDLARGREVHAHVVRFGFELDVDVVNAL 228

Query: 448 VDILSRAGQLEKAWQITQGMP--------------FEADTGVWG---------------- 477
           + +  + G +  A  +   MP              FE    + G                
Sbjct: 229 ITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDL 288

Query: 478 ----SLLAACVINLNVELG-ELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRV 529
               S+++AC +  +  LG E+    ++     + +V   L  +Y + G W +  +V
Sbjct: 289 MTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKV 345

Length = 857

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 61.3 bits (150), Expect = 3e-12
 Identities = 20/49 (40%), Positives = 32/49 (65%), Gaps = 4/49 (8%)

Query: 142 NTATYNAMISGFLKHGRLEEATRLFEQMPRR----NVISYTAMLDGFMK 186
           +  TYN +I G+ K G++EEA +LF +M +R    NV +Y+ ++DG  K
Sbjct: 2   DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 56.6 bits (138), Expect = 1e-10
 Identities = 15/48 (31%), Positives = 28/48 (58%)

Query: 368 PNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSAC 415
           P++V++NT+I  + + G  E+AL  F++M   G  P+  T+  L+   
Sbjct: 1   PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional

 Score = 63.4 bits (154), Expect = 2e-10
 Identities = 91/444 (20%), Positives = 175/444 (39%), Gaps = 60/444 (13%)

Query: 60  LSRAGKISAARQLFDQMTTKDVITWNAIITGYWQN-----GFLQESKNLFQSMPVKNIVS 114
           L R G+I     L + M  + ++  + I    +         ++E+    + +    + +
Sbjct: 380 LLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLST 439

Query: 115 WNCMIAGCIDNDRIDDAFDYFQAMPER----NTATYNAMISGFLKHGRLEEATRLFEQMP 170
           +N +++ C  +  ID A    + + E     +   Y  +IS   K G+++    +F +M 
Sbjct: 440 FNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMV 499

Query: 171 ----RRNVISYTAMLDGFMKKGEVDKARALSDYMSFKNV----VSWTVMITGYVKNERFC 222
                 NV ++ A++DG  + G+V KA      M  KNV    V +  +I+   ++    
Sbjct: 500 NAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVD 559

Query: 223 EARELFYRM--------PDYDKNVFVVTAMITGFCKVGMLENARLLFERIQPKDCVSF-- 272
            A ++   M        PD+      V A++      G ++ A+ +++ I   +      
Sbjct: 560 RAFDVLAEMKAETHPIDPDH----ITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPE 615

Query: 273 --NAMIAGYAQNGVAEEALRLFSGMIKMDMQPDDATLVSVFTAC-------SALQLLNEG 323
                +   +Q G  + AL ++  M K  ++PD+    ++            A ++L + 
Sbjct: 616 VYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDA 675

Query: 324 RQSHVLVIRNGFEANVSVCNAVITMYSRCGGILDSELA---FRQIHS----PNLVSWNTI 376
           R+     I+ G  +  S+  A       C    + + A   +  I S    P + + N +
Sbjct: 676 RKQG---IKLGTVSYSSLMGA-------CSNAKNWKKALELYEDIKSIKLRPTVSTMNAL 725

Query: 377 IAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMVKVYG 436
           I A  +     KAL   S+M   G  P+ IT+  LL A       +  +DL     K  G
Sbjct: 726 ITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLS-QAKEDG 784

Query: 437 IIPSSEHYTCLVDILSRAGQLEKA 460
           I P+     C+  +  R  + EKA
Sbjct: 785 IKPNLVMCRCITGLCLR--RFEKA 806

Length = 1060

>gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional

 Score = 61.8 bits (150), Expect = 6e-10
 Identities = 44/185 (23%), Positives = 90/185 (48%), Gaps = 13/185 (7%)

Query: 53  NNAKISALSRAGKISAARQLFDQMTTKDVITWNAIITGYWQNGFLQESKNLFQSM----P 108
           N A +   S+ G++  AR +FD+M  K++I+WNA+I GY  +G   ++  +F+ M     
Sbjct: 363 NTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGV 422

Query: 109 VKNIVSWNCMIAGCIDNDRIDDAFDYFQAMPERN-----TATYNAMISGFLKHGRLEEAT 163
             N V++  +++ C  +   +  ++ FQ+M E +        Y  MI    + G L+EA 
Sbjct: 423 APNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAY 482

Query: 164 RLFEQMPRRNVIS-YTAMLDGFMKKGEVDKARALSDY---MSFKNVVSWTVMITGYVKNE 219
            +  + P +  ++ + A+L        ++  R  ++    M  + + ++ V++  Y  + 
Sbjct: 483 AMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSG 542

Query: 220 RFCEA 224
           R  EA
Sbjct: 543 RQAEA 547

Length = 697

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 54.3 bits (132), Expect = 7e-10
 Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 4/50 (8%)

Query: 110 KNIVSWNCMIAGCIDNDRIDDAFDYFQAMPER----NTATYNAMISGFLK 155
            ++V++N +I G     ++++A   F  M +R    N  TY+ +I G  K
Sbjct: 1   PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional

 Score = 61.4 bits (149), Expect = 1e-09
 Identities = 75/384 (19%), Positives = 150/384 (39%), Gaps = 88/384 (22%)

Query: 57  ISALSRAGKISAARQLFDQMTTK----DVITWNAIITGYWQNGFLQESKNLFQSMPVKNI 112
           IS  +++GK+ A  ++F +M       +V T+ A+I G  + G + ++   +  M  KN+
Sbjct: 479 ISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNV 538

Query: 113 ----VSWNCMIAGCIDNDRIDDAFDYFQAMPERNT------ATYNAMISGFLKHGRLEEA 162
               V +N +I+ C  +  +D AFD    M            T  A++      G+++ A
Sbjct: 539 KPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRA 598

Query: 163 TRLFEQMPRRNVIS----YTAMLDGFMKKGEVDKARALSDYMSFKNVVSWTVMITGYVKN 218
             +++ +   N+      YT  ++   +KG+ D A ++ D M  K V             
Sbjct: 599 KEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVK------------ 646

Query: 219 ERFCEARELFYRMPDYDKNVFVVTAMITGFCKVGMLENARLLFERIQ-------PKDCVS 271
                        PD    VF  +A++      G L+ A   FE +Q           VS
Sbjct: 647 -------------PD---EVF-FSALVDVAGHAGDLDKA---FEILQDARKQGIKLGTVS 686

Query: 272 FNAMIAGYAQNGVAEEALRLFSGMIKMDMQPDDATLVSVFTACSALQLLNEGRQSHVLVI 331
           +++++   +     ++AL L+  +  + ++P  +T+ ++ TA      L EG Q      
Sbjct: 687 YSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITA------LCEGNQ------ 734

Query: 332 RNGFEANVSVCNAVITMYSRCGGILDSELAFRQIHSPNLVSWNTIIAAFAQHGHYEKALI 391
                  + V + +  +   C               PN ++++ ++ A  +    +  L 
Sbjct: 735 ---LPKALEVLSEMKRL-GLC---------------PNTITYSILLVASERKDDADVGLD 775

Query: 392 FFSQMGLNGFDPDGITFLSLLSAC 415
             SQ   +G  P+ +    +   C
Sbjct: 776 LLSQAKEDGIKPNLVMCRCITGLC 799

Length = 1060

>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional

 Score = 59.1 bits (143), Expect = 5e-09
 Identities = 43/145 (29%), Positives = 72/145 (49%), Gaps = 17/145 (11%)

Query: 334 GFEANVSVCNAVITMYSRCG---------GILDSELAFRQIHSPNLVSWNTIIAAFAQHG 384
           G EANV    A+I   +R G         GI+ S+        P+ V +N +I+A  Q G
Sbjct: 502 GVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNV-----KPDRVVFNALISACGQSG 556

Query: 385 HYEKALIFFSQMGLNG--FDPDGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSE 442
             ++A    ++M       DPD IT  +L+ AC +AG+V+ + ++++++ + Y I  + E
Sbjct: 557 AVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHE-YNIKGTPE 615

Query: 443 HYTCLVDILSRAGQLEKAWQITQGM 467
            YT  V+  S+ G  + A  I   M
Sbjct: 616 VYTIAVNSCSQKGDWDFALSIYDDM 640

Length = 1060

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 48.6 bits (117), Expect = 9e-08
 Identities = 17/48 (35%), Positives = 27/48 (56%)

Query: 267 KDCVSFNAMIAGYAQNGVAEEALRLFSGMIKMDMQPDDATLVSVFTAC 314
            D V++N +I GY + G  EEAL+LF+ M K  ++P+  T   +    
Sbjct: 1   PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 47.4 bits (114), Expect = 2e-07
 Identities = 16/49 (32%), Positives = 32/49 (65%), Gaps = 4/49 (8%)

Query: 173 NVISYTAMLDGFMKKGEVDKARALSDYMSFK----NVVSWTVMITGYVK 217
           +V++Y  ++DG+ KKG+V++A  L + M  +    NV +++++I G  K
Sbjct: 2   DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 46.6 bits (112), Expect = 4e-07
 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 2/50 (4%)

Query: 203 KNVVSWTVMITGYVKNERFCEARELFYRMPDYDK--NVFVVTAMITGFCK 250
            +VV++  +I GY K  +  EA +LF  M       NV+  + +I G CK
Sbjct: 1   PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|205109 pfam12854, PPR_1, PPR repeat

 Score = 46.2 bits (111), Expect = 4e-07
 Identities = 11/31 (35%), Positives = 19/31 (61%)

Query: 140 ERNTATYNAMISGFLKHGRLEEATRLFEQMP 170
           + +  TYN +I G  + GR++EA  L ++M 
Sbjct: 4   KPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|144943 pfam01535, PPR, PPR repeat

 Score = 44.8 bits (107), Expect = 1e-06
 Identities = 16/30 (53%), Positives = 23/30 (76%)

Query: 145 TYNAMISGFLKHGRLEEATRLFEQMPRRNV 174
           TYN++ISG+ K G+LEEA  LF++M  + V
Sbjct: 2   TYNSLISGYCKAGKLEEALELFKEMKEKGV 31

This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31

>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional

 Score = 49.5 bits (118), Expect = 4e-06
 Identities = 36/129 (27%), Positives = 64/129 (49%), Gaps = 7/129 (5%)

Query: 361 AFR---QIHSPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGH 417
           AFR    I +P L ++N +++  A     + AL     +   G   D   + +L+S C  
Sbjct: 425 AFRFAKLIRNPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAK 484

Query: 418 AGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEK---AWQITQGMPFEADTG 474
           +GKV+   ++F  MV   G+  +   +  L+D  +RAGQ+ K   A+ I +    + D  
Sbjct: 485 SGKVDAMFEVFHEMV-NAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRV 543

Query: 475 VWGSLLAAC 483
           V+ +L++AC
Sbjct: 544 VFNALISAC 552

Length = 1060

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 42.4 bits (101), Expect = 9e-06
 Identities = 15/30 (50%), Positives = 20/30 (66%)

Query: 145 TYNAMISGFLKHGRLEEATRLFEQMPRRNV 174
           TYN +I G  K GR+EEA  LF++M  R +
Sbjct: 2   TYNTLIDGLCKAGRVEEALELFKEMKERGI 31

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 40.1 bits (95), Expect = 6e-05
 Identities = 14/35 (40%), Positives = 21/35 (60%)

Query: 270 VSFNAMIAGYAQNGVAEEALRLFSGMIKMDMQPDD 304
           V++N +I G  + G  EEAL LF  M +  ++PD 
Sbjct: 1   VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 39.7 bits (94), Expect = 1e-04
 Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 6/51 (11%)

Query: 236 KNVFVVTAMITGFCKVGMLENARLLFE-----RIQPKDCVSFNAMIAGYAQ 281
            +V     +I G+CK G +E A  LF       I+P +  +++ +I G  +
Sbjct: 1   PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKP-NVYTYSILIDGLCK 50

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|144943 pfam01535, PPR, PPR repeat

 Score = 38.6 bits (91), Expect = 2e-04
 Identities = 13/31 (41%), Positives = 21/31 (67%)

Query: 270 VSFNAMIAGYAQNGVAEEALRLFSGMIKMDM 300
           V++N++I+GY + G  EEAL LF  M +  +
Sbjct: 1   VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31

This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31

>gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain

 Score = 38.3 bits (90), Expect = 2e-04
 Identities = 9/32 (28%), Positives = 15/32 (46%)

Query: 143 TATYNAMISGFLKHGRLEEATRLFEQMPRRNV 174
             TYNA++    K G  + A  + E+M    +
Sbjct: 1   LETYNALLLALAKAGDPDLALAVLEEMKASGL 32

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|144943 pfam01535, PPR, PPR repeat

 Score = 37.4 bits (88), Expect = 4e-04
 Identities = 10/31 (32%), Positives = 19/31 (61%)

Query: 371 VSWNTIIAAFAQHGHYEKALIFFSQMGLNGF 401
           V++N++I+ + + G  E+AL  F +M   G 
Sbjct: 1   VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31

This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 37.4 bits (88), Expect = 6e-04
 Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 1/47 (2%)

Query: 403 PDGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVD 449
           PD +T+ +L+      GKV E++ LF  M K  GI P+   Y+ L+D
Sbjct: 1   PDVVTYNTLIDGYCKKGKVEEALKLFNEMKK-RGIKPNVYTYSILID 46

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|144943 pfam01535, PPR, PPR repeat

 Score = 37.0 bits (87), Expect = 6e-04
 Identities = 11/26 (42%), Positives = 16/26 (61%)

Query: 206 VSWTVMITGYVKNERFCEARELFYRM 231
           V++  +I+GY K  +  EA ELF  M
Sbjct: 1   VTYNSLISGYCKAGKLEEALELFKEM 26

This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 37.4 bits (88), Expect = 8e-04
 Identities = 12/42 (28%), Positives = 22/42 (52%), Gaps = 4/42 (9%)

Query: 54 NAKISALSRAGKISAARQLFDQMTTK----DVITWNAIITGY 91
          N  I    + GK+  A +LF++M  +    +V T++ +I G 
Sbjct: 7  NTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|205109 pfam12854, PPR_1, PPR repeat

 Score = 36.6 bits (86), Expect = 0.001
 Identities = 8/30 (26%), Positives = 18/30 (60%)

Query: 367 SPNLVSWNTIIAAFAQHGHYEKALIFFSQM 396
            P++V++NT+I    + G  ++A+    +M
Sbjct: 4   KPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|205109 pfam12854, PPR_1, PPR repeat

 Score = 36.6 bits (86), Expect = 0.001
 Identities = 11/34 (32%), Positives = 20/34 (58%)

Query: 168 QMPRRNVISYTAMLDGFMKKGEVDKARALSDYMS 201
           +  + +V++Y  ++DG  + G VD+A  L D M 
Sbjct: 1   KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|205109 pfam12854, PPR_1, PPR repeat

 Score = 35.4 bits (83), Expect = 0.003
 Identities = 10/28 (35%), Positives = 16/28 (57%)

Query: 268 DCVSFNAMIAGYAQNGVAEEALRLFSGM 295
           D V++N +I G  + G  +EA+ L   M
Sbjct: 6   DVVTYNTLIDGLCRAGRVDEAVELLDEM 33

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	597
PLN03077	857	Protein ECB2; Provisional	100.0
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	100.0
PLN03077	857	Protein ECB2; Provisional	100.0
PLN03218	1060	maturation of RBCL 1; Provisional	100.0
PLN03218	1060	maturation of RBCL 1; Provisional	100.0
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	100.0
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	100.0
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	100.0
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.96
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.95
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.94
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.92
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.92
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.91
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.9
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.87
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.86
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.86
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.86
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.86
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.86
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.85
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.84
PRK14574	822	hmsH outer membrane protein; Provisional	99.83
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.83
PRK14574	822	hmsH outer membrane protein; Provisional	99.83
KOG2003	840	consensus TPR repeat-containing protein [General f	99.73
KOG1915	677	consensus Cell cycle control protein (crooked neck	99.72
KOG0495	913	consensus HAT repeat protein [RNA processing and m	99.72
KOG2076	895	consensus RNA polymerase III transcription factor	99.69
KOG1915	677	consensus Cell cycle control protein (crooked neck	99.67
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.66
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.65
KOG0495	913	consensus HAT repeat protein [RNA processing and m	99.65
KOG2076	895	consensus RNA polymerase III transcription factor	99.65
KOG2003	840	consensus TPR repeat-containing protein [General f	99.64
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.63
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.59
KOG2047	835	consensus mRNA splicing factor [RNA processing and	99.58
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.57
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.56
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.56
KOG1126	638	consensus DNA-binding cell division cycle control	99.53
KOG1126	638	consensus DNA-binding cell division cycle control	99.53
KOG4422	625	consensus Uncharacterized conserved protein [Funct	99.53
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.52
KOG4422	625	consensus Uncharacterized conserved protein [Funct	99.52
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.51
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.5
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	99.46
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.45
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	99.44
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.44
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.42
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.41
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.41
KOG2376	652	consensus Signal recognition particle, subunit Srp	99.39
KOG4318	1088	consensus Bicoid mRNA stability factor [RNA proces	99.38
KOG2047	835	consensus mRNA splicing factor [RNA processing and	99.35
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	99.35
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	99.31
PRK12370	553	invasion protein regulator; Provisional	99.3
KOG3785	557	consensus Uncharacterized conserved protein [Funct	99.25
KOG3785	557	consensus Uncharacterized conserved protein [Funct	99.25
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.24
KOG1129	478	consensus TPR repeat-containing protein [General f	99.23
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.23
PRK11189	296	lipoprotein NlpI; Provisional	99.23
PRK12370	553	invasion protein regulator; Provisional	99.23
PF13041	50	PPR_2: PPR repeat family	99.22
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	99.22
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.22
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	99.22
KOG3616	1636	consensus Selective LIM binding factor [Transcript	99.21
PF13041	50	PPR_2: PPR repeat family	99.19
KOG1129	478	consensus TPR repeat-containing protein [General f	99.19
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	99.17
PRK11189	296	lipoprotein NlpI; Provisional	99.17
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.15
KOG4318	1088	consensus Bicoid mRNA stability factor [RNA proces	99.13
KOG3616	1636	consensus Selective LIM binding factor [Transcript	99.13
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	99.11
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	99.09
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	99.08
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.08
KOG1125	579	consensus TPR repeat-containing protein [General f	99.07
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.06
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	99.03
KOG2376	652	consensus Signal recognition particle, subunit Srp	99.01
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	98.99
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	98.98
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.97
KOG4340	459	consensus Uncharacterized conserved protein [Funct	98.95
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	98.94
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	98.93
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	98.93
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	98.92
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.9
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	98.89
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	98.87
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	98.84
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.83
PRK04841	903	transcriptional regulator MalT; Provisional	98.83
PRK15359	144	type III secretion system chaperone protein SscB;	98.77
PRK10370	198	formate-dependent nitrite reductase complex subuni	98.77
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	98.77
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.71
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	98.69
PRK04841	903	transcriptional regulator MalT; Provisional	98.68
KOG4340	459	consensus Uncharacterized conserved protein [Funct	98.67
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	98.66
PRK15359	144	type III secretion system chaperone protein SscB;	98.64
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.64
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.63
PLN02789	320	farnesyltranstransferase	98.59
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.59
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.55
KOG1125	579	consensus TPR repeat-containing protein [General f	98.55
PRK10370	198	formate-dependent nitrite reductase complex subuni	98.53
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.52
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	98.5
KOG3060	289	consensus Uncharacterized conserved protein [Funct	98.49
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	98.46
PF12854	34	PPR_1: PPR repeat	98.45
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.44
TIGR02552	135	LcrH_SycD type III secretion low calcium response	98.42
PLN02789	320	farnesyltranstransferase	98.42
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	98.41
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.41
PF12854	34	PPR_1: PPR repeat	98.38
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.3
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.29
TIGR02552	135	LcrH_SycD type III secretion low calcium response	98.27
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.22
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	98.19
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.18
KOG3060	289	consensus Uncharacterized conserved protein [Funct	98.17
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.12
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.12
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.09
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	98.09
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	98.08
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.08
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.05
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	98.05
KOG0553	304	consensus TPR repeat-containing protein [General f	98.05
TIGR00756	35	PPR pentatricopeptide repeat domain (PPR motif). T	98.05
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.03
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	98.01
TIGR00756	35	PPR pentatricopeptide repeat domain (PPR motif). T	98.01
PRK15331	165	chaperone protein SicA; Provisional	98.01
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	97.97
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	97.97
PF13812	34	PPR_3: Pentatricopeptide repeat domain	97.96
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	97.95
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	97.95
PF13812	34	PPR_3: Pentatricopeptide repeat domain	97.92
KOG0553	304	consensus TPR repeat-containing protein [General f	97.9
KOG2041	1189	consensus WD40 repeat protein [General function pr	97.9
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	97.89
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	97.85
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	97.84
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	97.82
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	97.79
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	97.73
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	97.72
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	97.71
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	97.7
PF13371	73	TPR_9: Tetratricopeptide repeat	97.68
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	97.66
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	97.63
PF01535	31	PPR: PPR repeat; InterPro: IPR002885 This entry re	97.6
PF01535	31	PPR: PPR repeat; InterPro: IPR002885 This entry re	97.58
KOG2041	1189	consensus WD40 repeat protein [General function pr	97.58
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	97.57
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	97.55
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	97.55
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	97.53
PRK10803	263	tol-pal system protein YbgF; Provisional	97.53
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	97.51
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	97.5
COG4700	251	Uncharacterized protein conserved in bacteria cont	97.49
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	97.46
PF04840	319	Vps16_C: Vps16, C-terminal region; InterPro: IPR00	97.46
COG4700	251	Uncharacterized protein conserved in bacteria cont	97.46
PF13431	34	TPR_17: Tetratricopeptide repeat	97.44
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	97.43
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	97.39
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	97.39
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	97.38
PF12688	120	TPR_5: Tetratrico peptide repeat	97.37
PF08579	120	RPM2: Mitochondrial ribonuclease P subunit (RPM2);	97.36
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	97.32
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	97.26
PF12688	120	TPR_5: Tetratrico peptide repeat	97.26
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	97.23
PF08579	120	RPM2: Mitochondrial ribonuclease P subunit (RPM2);	97.23
PF10037	429	MRP-S27: Mitochondrial 28S ribosomal protein S27;	97.2
KOG2796	366	consensus Uncharacterized conserved protein [Funct	97.19
PF13428	44	TPR_14: Tetratricopeptide repeat	97.16
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	97.16
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	97.16
PF04840	319	Vps16_C: Vps16, C-terminal region; InterPro: IPR00	97.12
PF13371	73	TPR_9: Tetratricopeptide repeat	97.12
PF06239	228	ECSIT: Evolutionarily conserved signalling interme	97.09
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	97.07
KOG2796	366	consensus Uncharacterized conserved protein [Funct	97.05
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	97.04
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	97.0
PRK10803	263	tol-pal system protein YbgF; Provisional	96.99
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	96.97
COG3898	531	Uncharacterized membrane-bound protein [Function u	96.97
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	96.96
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	96.95
PF10037	429	MRP-S27: Mitochondrial 28S ribosomal protein S27;	96.93
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	96.92
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	96.8
PF06239	228	ECSIT: Evolutionarily conserved signalling interme	96.8
PRK11619	644	lytic murein transglycosylase; Provisional	96.79
PF03704	146	BTAD: Bacterial transcriptional activator domain;	96.79
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	96.7
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	96.61
PRK11906	458	transcriptional regulator; Provisional	96.58
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	96.58
KOG4555	175	consensus TPR repeat-containing protein [Function	96.55
PF13512	142	TPR_18: Tetratricopeptide repeat	96.5
PF09205	161	DUF1955: Domain of unknown function (DUF1955); Int	96.46
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	96.45
KOG1258	577	consensus mRNA processing protein [RNA processing	96.43
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	96.42
COG3898	531	Uncharacterized membrane-bound protein [Function u	96.41
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	96.41
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	96.38
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	96.3
PRK11906	458	transcriptional regulator; Provisional	96.24
COG4105	254	ComL DNA uptake lipoprotein [General function pred	96.21
PF12921	126	ATP13: Mitochondrial ATPase expression; InterPro:	96.12
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	96.04
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	96.04
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	96.02
KOG4234	271	consensus TPR repeat-containing protein [General f	95.9
KOG2610	491	consensus Uncharacterized conserved protein [Funct	95.88
COG0457	291	NrfG FOG: TPR repeat [General function prediction	95.87
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	95.84
COG3118	304	Thioredoxin domain-containing protein [Posttransla	95.77
PRK09687	280	putative lyase; Provisional	95.73
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	95.71
PF03704	146	BTAD: Bacterial transcriptional activator domain;	95.68
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	95.68
COG3118	304	Thioredoxin domain-containing protein [Posttransla	95.64
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	95.6
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	95.56
KOG1585	308	consensus Protein required for fusion of vesicles	95.52
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	95.52
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	95.46
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	95.43
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	95.31
KOG1258	577	consensus mRNA processing protein [RNA processing	95.24
PRK09687	280	putative lyase; Provisional	95.2
PRK15331	165	chaperone protein SicA; Provisional	95.2
KOG0890	2382	consensus Protein kinase of the PI-3 kinase family	95.12
COG0457	291	NrfG FOG: TPR repeat [General function prediction	95.11
KOG1585	308	consensus Protein required for fusion of vesicles	95.06
PF13512	142	TPR_18: Tetratricopeptide repeat	94.94
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	94.93
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	94.84
KOG1941	518	consensus Acetylcholine receptor-associated protei	94.72
PF09205	161	DUF1955: Domain of unknown function (DUF1955); Int	94.67
KOG2610	491	consensus Uncharacterized conserved protein [Funct	94.66
KOG3941	406	consensus Intermediate in Toll signal transduction	94.64
PF12921	126	ATP13: Mitochondrial ATPase expression; InterPro:	94.59
KOG1941	518	consensus Acetylcholine receptor-associated protei	94.4
KOG4555	175	consensus TPR repeat-containing protein [Function	94.34
smart00299	140	CLH Clathrin heavy chain repeat homology.	93.94
smart00299	140	CLH Clathrin heavy chain repeat homology.	93.91
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	93.91
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	93.76
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	93.55
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	93.44
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	93.4
PRK11619	644	lytic murein transglycosylase; Provisional	93.15
PF13428	44	TPR_14: Tetratricopeptide repeat	92.69
KOG3941	406	consensus Intermediate in Toll signal transduction	92.65
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	92.62
KOG4648	536	consensus Uncharacterized conserved protein, conta	92.47
COG3629	280	DnrI DNA-binding transcriptional activator of the	92.16
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	92.07
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	91.99
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	91.83
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	91.61
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	91.46
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	91.4
COG4105	254	ComL DNA uptake lipoprotein [General function pred	91.27
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	91.06
PF07035	167	Mic1: Colon cancer-associated protein Mic1-like; I	90.92
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	90.66
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	90.54
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	90.38
KOG1464	440	consensus COP9 signalosome, subunit CSN2 [Posttran	90.22
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	90.21
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	90.21
COG3629	280	DnrI DNA-binding transcriptional activator of the	90.12
PRK10941	269	hypothetical protein; Provisional	90.04
PF13170	297	DUF4003: Protein of unknown function (DUF4003)	89.95
COG3947	361	Response regulator containing CheY-like receiver a	89.8
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	89.75
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	89.75
TIGR02270	410	conserved hypothetical protein. Members are found	89.67
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	89.56
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	89.38
KOG1464	440	consensus COP9 signalosome, subunit CSN2 [Posttran	89.25
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	89.2
KOG4648	536	consensus Uncharacterized conserved protein, conta	89.16
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	89.12
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	89.05
PRK15180	831	Vi polysaccharide biosynthesis protein TviD; Provi	89.04
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	88.61
KOG3364	149	consensus Membrane protein involved in organellar	88.33
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	88.06
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	88.01
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	88.0
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	87.93
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	87.72
KOG4234	271	consensus TPR repeat-containing protein [General f	87.65
KOG4570	418	consensus Uncharacterized conserved protein [Funct	87.0
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	86.87
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	86.82
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	85.99
cd00923	103	Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va.	85.75
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	85.47
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	85.44
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	85.04
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	84.94
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	84.88
KOG0890	2382	consensus Protein kinase of the PI-3 kinase family	84.77
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	84.19
PF02284	108	COX5A: Cytochrome c oxidase subunit Va; InterPro:	84.14
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	83.93
PF13431	34	TPR_17: Tetratricopeptide repeat	83.26
TIGR02270	410	conserved hypothetical protein. Members are found	83.12
PF00637	143	Clathrin: Region in Clathrin and VPS; InterPro: IP	82.43
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	82.19
PRK12798	421	chemotaxis protein; Reviewed	81.94
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	81.93
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	81.87
PF14432	116	DYW_deaminase: DYW family of nucleic acid deaminas	81.62
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	81.19
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	80.87
KOG4279	1226	consensus Serine/threonine protein kinase [Signal	80.81
KOG1586	288	consensus Protein required for fusion of vesicles	80.81
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	80.21
KOG1586	288	consensus Protein required for fusion of vesicles	80.11
COG1747	711	Uncharacterized N-terminal domain of the transcrip	80.01

>PLN03077 Protein ECB2; Provisional

Probab=100.00  E-value=5e-84  Score=704.29  Aligned_cols=541  Identities=33%  Similarity=0.559  Sum_probs=529.0

Q ss_pred             CCCcchHHHHHHHHHhcCChHHHHHHHhhcCCCCcchHHHHHHHHHhCCChhHHHHHHhhCC----CCCcchHHHHHHHH
Q 007573           47 TQYVFVNNAKISALSRAGKISAARQLFDQMTTKDVITWNAIITGYWQNGFLQESKNLFQSMP----VKNIVSWNCMIAGC  122 (597)
Q Consensus        47 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~ll~~~  122 (597)
                      .||+.++|+||.+|+++|++++|.++|++|+.||+.+||+||.+|++.|++++|+++|++|.    .||..||+.++.+|
T Consensus       219 ~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~  298 (857)
T PLN03077        219 ELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISAC  298 (857)
T ss_pred             CcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHH
Confidence            78999999999999999999999999999999999999999999999999999999999996    46999999999999


Q ss_pred             HcCCChHHHHHHHccCC----CCChhhHHHHHHHHHcCCChHHHHHHHccCCCCCchhHHHHHHHHHhCCChhHHHHHHH
Q 007573          123 IDNDRIDDAFDYFQAMP----ERNTATYNAMISGFLKHGRLEEATRLFEQMPRRNVISYTAMLDGFMKKGEVDKARALSD  198 (597)
Q Consensus       123 ~~~~~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~  198 (597)
                      ++.|+.+.|.+++..+.    .||..+|++|+.+|+++|++++|.++|++|.+||.++|+.+|.+|++.|++++|+++|+
T Consensus       299 ~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~  378 (857)
T PLN03077        299 ELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYA  378 (857)
T ss_pred             HhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHH
Confidence            99999999999999987    78999999999999999999999999999999999999999999999999999999999


Q ss_pred             hc----ccCCcchHHHHHHHHHcCCChHHHHHHHhhcCC--CCCCchHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHH
Q 007573          199 YM----SFKNVVSWTVMITGYVKNERFCEARELFYRMPD--YDKNVFVVTAMITGFCKVGMLENARLLFERIQPKDCVSF  272 (597)
Q Consensus       199 ~m----~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~  272 (597)
                      +|    ..||..||+.++.+|++.|++++|.++++.+.+  ..|+..++++|+++|+++|++++|.++|++|.++|+.+|
T Consensus       379 ~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~  458 (857)
T PLN03077        379 LMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISW  458 (857)
T ss_pred             HHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeH
Confidence            99    569999999999999999999999999999977  668999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhccchhHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhc
Q 007573          273 NAMIAGYAQNGVAEEALRLFSGMIKMDMQPDDATLVSVFTACSALQLLNEGRQSHVLVIRNGFEANVSVCNAVITMYSRC  352 (597)
Q Consensus       273 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  352 (597)
                      |.+|.+|++.|+.++|+.+|++|.. +++||..||..++.+|++.|.++.+.+++..+.+.|+.++..++|+|+++|+++
T Consensus       459 ~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~  537 (857)
T PLN03077        459 TSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRC  537 (857)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHc
Confidence            9999999999999999999999986 699999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHhccCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhH
Q 007573          353 GGILDSELAFRQIHSPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMV  432 (597)
Q Consensus       353 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~  432 (597)
                      |++++|.++|+.+ .+|..+||+||.+|+++|+.++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|.
T Consensus       538 G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~  616 (857)
T PLN03077        538 GRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSME  616 (857)
T ss_pred             CCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHH
Confidence            9999999999999 999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHH
Q 007573          433 KVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMPFEADTGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVM  512 (597)
Q Consensus       433 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~  512 (597)
                      +.+|+.|+..+|++++++|++.|++++|.+++++|+.+||..+|++|+.+|..+|+.+.++...+++++++|+++..|..
T Consensus       617 ~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~l  696 (857)
T PLN03077        617 EKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYIL  696 (857)
T ss_pred             HHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHH
Confidence            77799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCcHHHHHHHHHHHhCCCccCCCeeEEEECCEEEEEEeCCCCCcchHHHHHHHHHHHHHHhhcCCccch
Q 007573          513 LSNLYAAAGMWRDVTRVRLLMKEQGVTKQCAYSWIEIGNKVHYFLGGDMSHPCIDKIHLELKRASVQMKSVDDFVEI  589 (597)
Q Consensus       513 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~  589 (597)
                      ++++|...|+|++|.++++.|+++|++|+||+|||++.+++|.|.+||++||+..+|+..|+.+..++++.|+++++
T Consensus       697 l~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g~~~~~  773 (857)
T PLN03077        697 LCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASGLAGSE  773 (857)
T ss_pred             HHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcchHHHHHHHHHHHHHHHhCCcCCCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999998764

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=100.00  E-value=1.5e-77  Score=638.27  Aligned_cols=511  Identities=30%  Similarity=0.508  Sum_probs=497.3

Q ss_pred             CCcchHHHHHHHHHhCCChhHHHHHHhhCCC-----CCcchHHHHHHHHHcCCChHHHHHHHccCC----CCChhhHHHH
Q 007573           79 KDVITWNAIITGYWQNGFLQESKNLFQSMPV-----KNIVSWNCMIAGCIDNDRIDDAFDYFQAMP----ERNTATYNAM  149 (597)
Q Consensus        79 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~l  149 (597)
                      ++..+|+.+|.+|.+.|++++|+++|+.|..     +|..+|+.++.+|++.++++.|.+++..|.    .||..+|+.|
T Consensus        85 ~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~L  164 (697)
T PLN03081         85 KSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRV  164 (697)
T ss_pred             CCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHH
Confidence            5677999999999999999999999999963     488999999999999999999999999987    6899999999


Q ss_pred             HHHHHcCCChHHHHHHHccCCCCCchhHHHHHHHHHhCCChhHHHHHHHhc----ccCCcchHHHHHHHHHcCCChHHHH
Q 007573          150 ISGFLKHGRLEEATRLFEQMPRRNVISYTAMLDGFMKKGEVDKARALSDYM----SFKNVVSWTVMITGYVKNERFCEAR  225 (597)
Q Consensus       150 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~~~~~~~~ll~~~~~~g~~~~a~  225 (597)
                      +.+|++.|++++|.++|++|.+||.++|+.++.+|++.|++++|+++|++|    ..||..+|+.++.+|+..|..+.+.
T Consensus       165 i~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~  244 (697)
T PLN03081        165 LLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQ  244 (697)
T ss_pred             HHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHH
Confidence            999999999999999999999999999999999999999999999999999    5688999999999999999999999


Q ss_pred             HHHhhcCC--CCCCchHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCC
Q 007573          226 ELFYRMPD--YDKNVFVVTAMITGFCKVGMLENARLLFERIQPKDCVSFNAMIAGYAQNGVAEEALRLFSGMIKMDMQPD  303 (597)
Q Consensus       226 ~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~  303 (597)
                      +++..+.+  ..||..++++|+++|+++|++++|.++|++|.++|+++||.||.+|++.|++++|+++|++|.+.|+.||
T Consensus       245 ~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd  324 (697)
T PLN03081        245 QLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSID  324 (697)
T ss_pred             HHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Confidence            99998876  6789999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhccchhHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHhccCCCChhhHHHHHHHHHHc
Q 007573          304 DATLVSVFTACSALQLLNEGRQSHVLVIRNGFEANVSVCNAVITMYSRCGGILDSELAFRQIHSPNLVSWNTIIAAFAQH  383 (597)
Q Consensus       304 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~  383 (597)
                      ..||+.++.+|++.|+++.|.+++..+.+.|++++..++++|+++|+++|++++|.++|++|.++|..+||+||.+|+++
T Consensus       325 ~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~  404 (697)
T PLN03081        325 QFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNH  404 (697)
T ss_pred             HHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHH
Q 007573          384 GHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQI  463 (597)
Q Consensus       384 g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~  463 (597)
                      |+.++|+++|++|.+.|+.||..||+.++.+|.+.|.+++|.++|+.|.+.+|+.|+..+|++++++|++.|++++|.++
T Consensus       405 G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~  484 (697)
T PLN03081        405 GRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAM  484 (697)
T ss_pred             CCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHH
Confidence            99999999999999999999999999999999999999999999999998889999999999999999999999999999


Q ss_pred             HhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHhCCCccCCC
Q 007573          464 TQGMPFEADTGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRVRLLMKEQGVTKQCA  543 (597)
Q Consensus       464 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~  543 (597)
                      +++|+..|+..+|++|+.+|..+|+++.|..+++++++++|++..+|..++++|.+.|+|++|.++++.|+++|+++.||
T Consensus       485 ~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g  564 (697)
T PLN03081        485 IRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPA  564 (697)
T ss_pred             HHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeEEEECCEEEEEEeCCCCCcchHHHHHHHHHHHHHHhhcCCccch
Q 007573          544 YSWIEIGNKVHYFLGGDMSHPCIDKIHLELKRASVQMKSVDDFVEI  589 (597)
Q Consensus       544 ~s~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~  589 (597)
                      +||+++.+.+|.|.+||.+||+..+++..|.++..++++.|.++.+
T Consensus       565 ~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~  610 (697)
T PLN03081        565 CTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEE  610 (697)
T ss_pred             eeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCc
Confidence            9999999999999999999999999999999999999999988764

>PLN03077 Protein ECB2; Provisional

Probab=100.00  E-value=1.6e-70  Score=598.23  Aligned_cols=492  Identities=27%  Similarity=0.450  Sum_probs=474.1

Q ss_pred             CCCcchHHHHHHHHHhcCChHHHHHHHhhcCCCCcchHHHHHHHHHhCCChhHHHHHHhhCC----CCCcchHHHHHHHH
Q 007573           47 TQYVFVNNAKISALSRAGKISAARQLFDQMTTKDVITWNAIITGYWQNGFLQESKNLFQSMP----VKNIVSWNCMIAGC  122 (597)
Q Consensus        47 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~ll~~~  122 (597)
                      .+++.++|+|+++|++.|+++.|+++|++|++||+.+||.+|.+|++.|++++|+++|++|.    .||..||+.++++|
T Consensus       118 ~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~  197 (857)
T PLN03077        118 SLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTC  197 (857)
T ss_pred             CCCchHHHHHHHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHh
Confidence            68889999999999999999999999999999999999999999999999999999999996    57999999999999


Q ss_pred             HcCCChHHHHHHHccCC----CCChhhHHHHHHHHHcCCChHHHHHHHccCCCCCchhHHHHHHHHHhCCChhHHHHHHH
Q 007573          123 IDNDRIDDAFDYFQAMP----ERNTATYNAMISGFLKHGRLEEATRLFEQMPRRNVISYTAMLDGFMKKGEVDKARALSD  198 (597)
Q Consensus       123 ~~~~~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~  198 (597)
                      +..+++..+.+++..+.    .+|+.++++|+.+|+++|++++|.++|++|+++|.++||++|.+|++.|++++|+++|+
T Consensus       198 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~  277 (857)
T PLN03077        198 GGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFF  277 (857)
T ss_pred             CCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHH
Confidence            99999999999998887    78999999999999999999999999999999999999999999999999999999999


Q ss_pred             hc----ccCCcchHHHHHHHHHcCCChHHHHHHHhhcCC--CCCCchHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHH
Q 007573          199 YM----SFKNVVSWTVMITGYVKNERFCEARELFYRMPD--YDKNVFVVTAMITGFCKVGMLENARLLFERIQPKDCVSF  272 (597)
Q Consensus       199 ~m----~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~  272 (597)
                      +|    ..||..||+.++.+|++.|+.+.|.+++..+.+  +.||..+|++|+.+|+++|++++|.++|++|..+|+.+|
T Consensus       278 ~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~  357 (857)
T PLN03077        278 TMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSW  357 (857)
T ss_pred             HHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeH
Confidence            99    579999999999999999999999999999977  779999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhccchhHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhc
Q 007573          273 NAMIAGYAQNGVAEEALRLFSGMIKMDMQPDDATLVSVFTACSALQLLNEGRQSHVLVIRNGFEANVSVCNAVITMYSRC  352 (597)
Q Consensus       273 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  352 (597)
                      |.+|.+|.+.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++++.+.+.|+.++..++++|+++|+++
T Consensus       358 n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~  437 (857)
T PLN03077        358 TAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKC  437 (857)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHhccCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhH
Q 007573          353 GGILDSELAFRQIHSPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMV  432 (597)
Q Consensus       353 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~  432 (597)
                      |++++|.++|++|.++|..+|+++|.+|++.|+.++|+++|++|.. ++.||..||+.++.+|++.|.++.+.+++..+.
T Consensus       438 g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~  516 (857)
T PLN03077        438 KCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVL  516 (857)
T ss_pred             CCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHH
Confidence            9999999999999999999999999999999999999999999986 689999999999999999999999999999998


Q ss_pred             HhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-CCchHH
Q 007573          433 KVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMPFEADTGVWGSLLAACVINLNVELGELAAKKMRELDPQ-NSAVYV  511 (597)
Q Consensus       433 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~-~~~~~~  511 (597)
                      +. |+.++..++++|+++|+++|++++|.++|+++  .||..+|++++.+|.++|+.++|.++|++|.+.+.. |..+|.
T Consensus       517 ~~-g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~--~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~  593 (857)
T PLN03077        517 RT-GIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH--EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFI  593 (857)
T ss_pred             Hh-CCCccceechHHHHHHHHcCCHHHHHHHHHhc--CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHH
Confidence            87 99999999999999999999999999999998  799999999999999999999999999999987643 478899


Q ss_pred             HHHHHHHhcCCcHHHHHHHHHHH-hCCCccCC
Q 007573          512 MLSNLYAAAGMWRDVTRVRLLMK-EQGVTKQC  542 (597)
Q Consensus       512 ~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~  542 (597)
                      .++.+|.+.|++++|.++|+.|. +.|+.|..
T Consensus       594 ~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~  625 (857)
T PLN03077        594 SLLCACSRSGMVTQGLEYFHSMEEKYSITPNL  625 (857)
T ss_pred             HHHHHHhhcChHHHHHHHHHHHHHHhCCCCch
Confidence            99999999999999999999998 57876654

>PLN03218 maturation of RBCL 1; Provisional

Probab=100.00  E-value=1.6e-63  Score=532.27  Aligned_cols=494  Identities=17%  Similarity=0.246  Sum_probs=456.3

Q ss_pred             CCCcchHHHHHHHHHhcCChHHHHHHHhhcCCCCcc-----hHHHHHHHHHhCCChhHHHHHHhhCCCCCcchHHHHHHH
Q 007573           47 TQYVFVNNAKISALSRAGKISAARQLFDQMTTKDVI-----TWNAIITGYWQNGFLQESKNLFQSMPVKNIVSWNCMIAG  121 (597)
Q Consensus        47 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~  121 (597)
                      .++...|..++..|++.|++++|+++|++|..++..     +++.++.+|.+.|.+++|..+|+.|..||..+|+.++.+
T Consensus       367 ~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a  446 (1060)
T PLN03218        367 KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSV  446 (1060)
T ss_pred             CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence            567778999999999999999999999999886554     455677789999999999999999999999999999999


Q ss_pred             HHcCCChHHHHHHHccCC----CCChhhHHHHHHHHHcCCChHHHHHHHccCC----CCCchhHHHHHHHHHhCCChhHH
Q 007573          122 CIDNDRIDDAFDYFQAMP----ERNTATYNAMISGFLKHGRLEEATRLFEQMP----RRNVISYTAMLDGFMKKGEVDKA  193 (597)
Q Consensus       122 ~~~~~~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A  193 (597)
                      |++.|++++|.++|+.|.    .||..+|+.||.+|++.|++++|.++|++|.    .||..+|+.||.+|++.|++++|
T Consensus       447 ~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeA  526 (1060)
T PLN03218        447 CASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKA  526 (1060)
T ss_pred             HHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHH
Confidence            999999999999999998    6899999999999999999999999999998    48999999999999999999999


Q ss_pred             HHHHHhc----ccCCcchHHHHHHHHHcCCChHHHHHHHhhcCC----CCCCchHHHHHHHHHHhcCCHHHHHHHHhhcC
Q 007573          194 RALSDYM----SFKNVVSWTVMITGYVKNERFCEARELFYRMPD----YDKNVFVVTAMITGFCKVGMLENARLLFERIQ  265 (597)
Q Consensus       194 ~~~~~~m----~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  265 (597)
                      .++|++|    ..||..+|+.++.+|++.|++++|.++|++|..    +.||..+|++++.+|++.|++++|.++|+.|.
T Consensus       527 l~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~  606 (1060)
T PLN03218        527 FGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIH  606 (1060)
T ss_pred             HHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            9999999    468999999999999999999999999999954    67999999999999999999999999999997


Q ss_pred             C----CChhHHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhccchhHHHHHHHHHHHHhCCCCcccH
Q 007573          266 P----KDCVSFNAMIAGYAQNGVAEEALRLFSGMIKMDMQPDDATLVSVFTACSALQLLNEGRQSHVLVIRNGFEANVSV  341 (597)
Q Consensus       266 ~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  341 (597)
                      +    ++..+|+.+|.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|+.++|.+++..|.+.|+.|+..+
T Consensus       607 e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~t  686 (1060)
T PLN03218        607 EYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVS  686 (1060)
T ss_pred             HcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHH
Confidence            5    467899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHhccC----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhc
Q 007573          342 CNAVITMYSRCGGILDSELAFRQIH----SPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGH  417 (597)
Q Consensus       342 ~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~  417 (597)
                      |++|+.+|+++|++++|.++|++|.    .||..+||.||.+|++.|++++|.++|++|...|+.||..||+.++.+|++
T Consensus       687 ynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k  766 (1060)
T PLN03218        687 YSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASER  766 (1060)
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence            9999999999999999999999995    799999999999999999999999999999999999999999999999999


Q ss_pred             cCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhh----c-------------------CCHHHHHHHHhhCC---CCC
Q 007573          418 AGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSR----A-------------------GQLEKAWQITQGMP---FEA  471 (597)
Q Consensus       418 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~-------------------g~~~~A~~~~~~~~---~~p  471 (597)
                      .|++++|.++|+.|.+. |+.||..+|++++.++.+    +                   +..++|..+|++|.   ..|
T Consensus       767 ~G~le~A~~l~~~M~k~-Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~P  845 (1060)
T PLN03218        767 KDDADVGLDLLSQAKED-GIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLP  845 (1060)
T ss_pred             CCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCC
Confidence            99999999999999887 999999999999876432    2                   23467999999997   789


Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-CCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHhCCCccCCC
Q 007573          472 DTGVWGSLLAACVINLNVELGELAAKKMREL-DPQNSAVYVMLSNLYAAAGMWRDVTRVRLLMKEQGVTKQCA  543 (597)
Q Consensus       472 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~  543 (597)
                      |..+|+.++.++...+..+.+..+++.+... .+++..+|..+++.+.+.  .++|..++++|...|+.|...
T Consensus       846 d~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~  916 (1060)
T PLN03218        846 TMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSVS  916 (1060)
T ss_pred             CHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCcc
Confidence            9999999998887888888888888876533 455678899999987332  368999999999999977653

>PLN03218 maturation of RBCL 1; Provisional

Probab=100.00  E-value=2.4e-59  Score=500.33  Aligned_cols=504  Identities=12%  Similarity=0.179  Sum_probs=450.4

Q ss_pred             CCcchHHHHHHHHHhCCChhHHHHHHhhCCCC-----CcchHHHHHHHHHcCCChHHHHHHHccCCCCChhhHHHHHHHH
Q 007573           79 KDVITWNAIITGYWQNGFLQESKNLFQSMPVK-----NIVSWNCMIAGCIDNDRIDDAFDYFQAMPERNTATYNAMISGF  153 (597)
Q Consensus        79 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~  153 (597)
                      ++...|..++..+++.|++++|+++|++|..+     +..+++.++.+|.+.|.+++|..+++.|..||..+|+.++.+|
T Consensus       368 ~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a~  447 (1060)
T PLN03218        368 RKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVC  447 (1060)
T ss_pred             CCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence            67778999999999999999999999999876     4456677888899999999999999999999999999999999


Q ss_pred             HcCCChHHHHHHHccCCC----CCchhHHHHHHHHHhCCChhHHHHHHHhcc----cCCcchHHHHHHHHHcCCChHHHH
Q 007573          154 LKHGRLEEATRLFEQMPR----RNVISYTAMLDGFMKKGEVDKARALSDYMS----FKNVVSWTVMITGYVKNERFCEAR  225 (597)
Q Consensus       154 ~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~~~~~~~~ll~~~~~~g~~~~a~  225 (597)
                      ++.|+++.|.++|++|.+    ||..+|+.||.+|++.|++++|.++|++|.    .||..+|+.++.+|++.|++++|.
T Consensus       448 ~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl  527 (1060)
T PLN03218        448 ASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAF  527 (1060)
T ss_pred             HhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHH
Confidence            999999999999999974    899999999999999999999999999995    689999999999999999999999


Q ss_pred             HHHhhcCC--CCCCchHHHHHHHHHHhcCCHHHHHHHHhhcC------CCChhHHHHHHHHHHHcCChhHHHHHHHHhHH
Q 007573          226 ELFYRMPD--YDKNVFVVTAMITGFCKVGMLENARLLFERIQ------PKDCVSFNAMIAGYAQNGVAEEALRLFSGMIK  297 (597)
Q Consensus       226 ~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  297 (597)
                      ++|+.|.+  +.||..+|+.++.+|++.|++++|.++|++|.      .+|..+|+.+|.+|++.|++++|.++|++|.+
T Consensus       528 ~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e  607 (1060)
T PLN03218        528 GAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHE  607 (1060)
T ss_pred             HHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            99999965  78999999999999999999999999999984      47899999999999999999999999999999


Q ss_pred             CCCCCCHHHHHHHHHHHhccchhHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHhccC----CCChhhH
Q 007573          298 MDMQPDDATLVSVFTACSALQLLNEGRQSHVLVIRNGFEANVSVCNAVITMYSRCGGILDSELAFRQIH----SPNLVSW  373 (597)
Q Consensus       298 ~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~  373 (597)
                      .|+.|+..+|+.++.+|++.|++++|..++..|.+.|+.||..+|+.++++|++.|++++|.++++.|.    .||..+|
T Consensus       608 ~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~ty  687 (1060)
T PLN03218        608 YNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSY  687 (1060)
T ss_pred             cCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999999997    6899999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhh
Q 007573          374 NTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSR  453 (597)
Q Consensus       374 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~  453 (597)
                      +.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+. |+.||..+|+.++.+|++
T Consensus       688 nsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~-Gi~Pd~~Ty~sLL~a~~k  766 (1060)
T PLN03218        688 SSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRL-GLCPNTITYSILLVASER  766 (1060)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999876 999999999999999999


Q ss_pred             cCCHHHHHHHHhhCC---CCCCHHHHHHHHHHHHh----c-------------------CCHHHHHHHHHHHHhcCCC-C
Q 007573          454 AGQLEKAWQITQGMP---FEADTGVWGSLLAACVI----N-------------------LNVELGELAAKKMRELDPQ-N  506 (597)
Q Consensus       454 ~g~~~~A~~~~~~~~---~~p~~~~~~~l~~~~~~----~-------------------g~~~~a~~~~~~~~~~~p~-~  506 (597)
                      .|++++|.+++++|.   ..||..+|++++..|.+    .                   +..++|..+|++|++.+.. +
T Consensus       767 ~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd  846 (1060)
T PLN03218        767 KDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPT  846 (1060)
T ss_pred             CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCC
Confidence            999999999999986   78999999999876542    1                   2246799999999988744 4


Q ss_pred             CchHHHHHHHHHhcCCcHHHHHHHHHHHhCCCccCCCeeEEEECCEEEEEEeCCCCCcchHHHHHHHHHHHHHHhhcCCc
Q 007573          507 SAVYVMLSNLYAAAGMWRDVTRVRLLMKEQGVTKQCAYSWIEIGNKVHYFLGGDMSHPCIDKIHLELKRASVQMKSVDDF  586 (597)
Q Consensus       507 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~  586 (597)
                      ..+|..++.++...+..+.+.++++.|...+..+... .+.       .++.|...+  ..+++..++.|....-.++-+
T Consensus       847 ~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~-~y~-------~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~  916 (1060)
T PLN03218        847 MEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQS-NLS-------TLVDGFGEY--DPRAFSLLEEAASLGVVPSVS  916 (1060)
T ss_pred             HHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchh-hhH-------HHHHhhccC--hHHHHHHHHHHHHcCCCCCcc
Confidence            7889999988888999998888888876555432211 111       122222222  356888888887777766665


Q ss_pred             cchhcccc
Q 007573          587 VEIATSWS  594 (597)
Q Consensus       587 ~~~~~~~~  594 (597)
                      .+.. .|+
T Consensus       917 ~~~~-~~~  923 (1060)
T PLN03218        917 FKKS-PIV  923 (1060)
T ss_pred             cccC-ceE
Confidence            5444 554

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=100.00  E-value=1.1e-55  Score=470.56  Aligned_cols=448  Identities=18%  Similarity=0.259  Sum_probs=423.1

Q ss_pred             CCCcchHHHHHHHHHhcCChHHHHHHHhhcCC-----CCcchHHHHHHHHHhCCChhHHHHHHhhCC----CCCcchHHH
Q 007573           47 TQYVFVNNAKISALSRAGKISAARQLFDQMTT-----KDVITWNAIITGYWQNGFLQESKNLFQSMP----VKNIVSWNC  117 (597)
Q Consensus        47 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~  117 (597)
                      ..+...|+.+|..|.+.|++++|.++|+.|..     ||..+|+.++.++++.++++.|..++..|.    .+|..+|+.
T Consensus        84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~  163 (697)
T PLN03081         84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR  163 (697)
T ss_pred             CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence            45667999999999999999999999999953     688999999999999999999999999986    469999999


Q ss_pred             HHHHHHcCCChHHHHHHHccCCCCChhhHHHHHHHHHcCCChHHHHHHHccCC----CCCchhHHHHHHHHHhCCChhHH
Q 007573          118 MIAGCIDNDRIDDAFDYFQAMPERNTATYNAMISGFLKHGRLEEATRLFEQMP----RRNVISYTAMLDGFMKKGEVDKA  193 (597)
Q Consensus       118 ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A  193 (597)
                      ++.+|++.|++++|.++|++|..||..+|++++.+|++.|++++|.++|++|.    .||..+|+.++.++++.|..+.+
T Consensus       164 Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~  243 (697)
T PLN03081        164 VLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAG  243 (697)
T ss_pred             HHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHH
Confidence            99999999999999999999999999999999999999999999999999996    48899999999999999999999


Q ss_pred             HHHHHhc----ccCCcchHHHHHHHHHcCCChHHHHHHHhhcCCCCCCchHHHHHHHHHHhcCCHHHHHHHHhhcC----
Q 007573          194 RALSDYM----SFKNVVSWTVMITGYVKNERFCEARELFYRMPDYDKNVFVVTAMITGFCKVGMLENARLLFERIQ----  265 (597)
Q Consensus       194 ~~~~~~m----~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----  265 (597)
                      .+++..+    ..+|..+|+.++.+|++.|++++|.++|+.|..  +|..+|++++.+|++.|++++|.++|++|.    
T Consensus       244 ~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~--~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~  321 (697)
T PLN03081        244 QQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE--KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGV  321 (697)
T ss_pred             HHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC--CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence            9998877    467999999999999999999999999999987  899999999999999999999999999984    


Q ss_pred             CCChhHHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhccchhHHHHHHHHHHHHhCCCCcccHHHHH
Q 007573          266 PKDCVSFNAMIAGYAQNGVAEEALRLFSGMIKMDMQPDDATLVSVFTACSALQLLNEGRQSHVLVIRNGFEANVSVCNAV  345 (597)
Q Consensus       266 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  345 (597)
                      .+|..+|+.++.+|++.|++++|.+++..|.+.|+.||..+++.++.+|++.|+++.|.++|+.|.    .+|..+||++
T Consensus       322 ~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~~t~n~l  397 (697)
T PLN03081        322 SIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNLISWNAL  397 (697)
T ss_pred             CCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCCeeeHHHH
Confidence            579999999999999999999999999999999999999999999999999999999999999985    4789999999


Q ss_pred             HHHHHhcCCHHHHHHHHhccC----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHH-CCCCCChHHHHHHHHHHhccCc
Q 007573          346 ITMYSRCGGILDSELAFRQIH----SPNLVSWNTIIAAFAQHGHYEKALIFFSQMGL-NGFDPDGITFLSLLSACGHAGK  420 (597)
Q Consensus       346 ~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~~~~~~~ll~~~~~~g~  420 (597)
                      |.+|++.|+.++|.++|++|.    .||..||+.++.+|++.|..++|.++|+.|.+ .|+.|+..+|+.++.++++.|+
T Consensus       398 I~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~  477 (697)
T PLN03081        398 IAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGL  477 (697)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCC
Confidence            999999999999999999997    79999999999999999999999999999986 6999999999999999999999


Q ss_pred             HHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 007573          421 VNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMP-FEAD-TGVWGSLLAACVINLNVELGELAAKK  498 (597)
Q Consensus       421 ~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~  498 (597)
                      +++|.+++++|    ++.|+..+|++|+.+|...|+++.|..+++++. ..|+ ..+|..|+..|.+.|++++|.+++++
T Consensus       478 ~~eA~~~~~~~----~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~  553 (697)
T PLN03081        478 LDEAYAMIRRA----PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVET  553 (697)
T ss_pred             HHHHHHHHHHC----CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHH
Confidence            99999998865    789999999999999999999999999998875 5564 67999999999999999999999999


Q ss_pred             HHhcCC
Q 007573          499 MRELDP  504 (597)
Q Consensus       499 ~~~~~p  504 (597)
                      |.+.+-
T Consensus       554 m~~~g~  559 (697)
T PLN03081        554 LKRKGL  559 (697)
T ss_pred             HHHcCC
Confidence            998763

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=100.00  E-value=3.1e-32  Score=304.43  Aligned_cols=483  Identities=12%  Similarity=0.069  Sum_probs=334.4

Q ss_pred             CcchHHHHHHHHHhcCChHHHHHHHhhcCC---CCcchHHHHHHHHHhCCChhHHHHHHhhCCCC---CcchHHHHHHHH
Q 007573           49 YVFVNNAKISALSRAGKISAARQLFDQMTT---KDVITWNAIITGYWQNGFLQESKNLFQSMPVK---NIVSWNCMIAGC  122 (597)
Q Consensus        49 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~  122 (597)
                      ++..++.+...|.+.|++++|.+.|+++.+   .+...|..+...+...|++++|+..|+++.+.   +......++..+
T Consensus       362 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~  441 (899)
T TIGR02917       362 DPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSY  441 (899)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHH
Confidence            344445555555555555555555555433   12233444445555555555555555554422   233444455555


Q ss_pred             HcCCChHHHHHHHccCC---CCChhhHHHHHHHHHcCCChHHHHHHHccCCC---CCchhHHHHHHHHHhCCChhHHHHH
Q 007573          123 IDNDRIDDAFDYFQAMP---ERNTATYNAMISGFLKHGRLEEATRLFEQMPR---RNVISYTAMLDGFMKKGEVDKARAL  196 (597)
Q Consensus       123 ~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~  196 (597)
                      .+.|++++|..+++.+.   +.++.++..+...|...|++++|.+.|+++.+   .+...+..++..+...|++++|...
T Consensus       442 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  521 (899)
T TIGR02917       442 LRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQR  521 (899)
T ss_pred             HhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence            56666666666665554   33555666667777777777777777766543   2344566666667777777777777


Q ss_pred             HHhccc---CCcchHHHHHHHHHcCCChHHHHHHHhhcCCCCC-CchHHHHHHHHHHhcCCHHHHHHHHhhcCC---CCh
Q 007573          197 SDYMSF---KNVVSWTVMITGYVKNERFCEARELFYRMPDYDK-NVFVVTAMITGFCKVGMLENARLLFERIQP---KDC  269 (597)
Q Consensus       197 ~~~m~~---~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~  269 (597)
                      ++++..   .+..++..+...+...|+.++|...++.+.+..| +...+..++..|.+.|++++|..+++.+.+   .+.
T Consensus       522 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~  601 (899)
T TIGR02917       522 FEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSP  601 (899)
T ss_pred             HHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCH
Confidence            776632   2445666677777777777777777777766444 344566677777777777777777777643   355


Q ss_pred             hHHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhccchhHHHHHHHHHHHHhCCCCcccHHHHHHHHH
Q 007573          270 VSFNAMIAGYAQNGVAEEALRLFSGMIKMDMQPDDATLVSVFTACSALQLLNEGRQSHVLVIRNGFEANVSVCNAVITMY  349 (597)
Q Consensus       270 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  349 (597)
                      ..|..++..+...|++++|+..|+++.+.. +.+...+..+...+...|++++|...++.+.+.. +.+...+..++..+
T Consensus       602 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~  679 (899)
T TIGR02917       602 EAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLL  679 (899)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence            677777888888888888888887777643 2344556666777777788888888887777654 44566777778888


Q ss_pred             HhcCCHHHHHHHHhccC---CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHH
Q 007573          350 SRCGGILDSELAFRQIH---SPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMD  426 (597)
Q Consensus       350 ~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~  426 (597)
                      ...|++++|..+++.+.   +.+...+..+...+...|++++|++.|+++...  .|+..++..+..++.+.|++++|.+
T Consensus       680 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~  757 (899)
T TIGR02917       680 LAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASGNTAEAVK  757 (899)
T ss_pred             HHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHHHHHH
Confidence            88888888888887775   345667777778888888888888888888765  4555667777888888888888888


Q ss_pred             HHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 007573          427 LFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMP--FEADTGVWGSLLAACVINLNVELGELAAKKMRELDP  504 (597)
Q Consensus       427 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p  504 (597)
                      .++.+.+.  .+.+...+..++..|.+.|+.++|.+.|+++.  .+++..+++.++..+...|+ ++|+..++++++..|
T Consensus       758 ~~~~~l~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~  834 (899)
T TIGR02917       758 TLEAWLKT--HPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAP  834 (899)
T ss_pred             HHHHHHHh--CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCC
Confidence            88888763  34567788888888888888888888888875  34466788888888888888 778888888888888


Q ss_pred             CCCchHHHHHHHHHhcCCcHHHHHHHHHHHhCCC
Q 007573          505 QNSAVYVMLSNLYAAAGMWRDVTRVRLLMKEQGV  538 (597)
Q Consensus       505 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  538 (597)
                      +++..+..++.++...|++++|.++++++.+.+.
T Consensus       835 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~  868 (899)
T TIGR02917       835 NIPAILDTLGWLLVEKGEADRALPLLRKAVNIAP  868 (899)
T ss_pred             CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            8888888888888889999999999988887654

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=100.00  E-value=7.2e-32  Score=301.44  Aligned_cols=483  Identities=11%  Similarity=0.065  Sum_probs=424.2

Q ss_pred             CCCcchHHHHHHHHHhcCChHHHHHHHhhcCC--C-CcchHHHHHHHHHhCCChhHHHHHHhhCCCC---CcchHHHHHH
Q 007573           47 TQYVFVNNAKISALSRAGKISAARQLFDQMTT--K-DVITWNAIITGYWQNGFLQESKNLFQSMPVK---NIVSWNCMIA  120 (597)
Q Consensus        47 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~  120 (597)
                      +.+...+..+...+...|++++|.+.|+++..  | +...+..++..+.+.|++++|+.+++++...   ++.++..+..
T Consensus       394 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~  473 (899)
T TIGR02917       394 PENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGA  473 (899)
T ss_pred             CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHH
Confidence            45667888899999999999999999999866  2 3346677888999999999999999998743   7788999999


Q ss_pred             HHHcCCChHHHHHHHccCC---CCChhhHHHHHHHHHcCCChHHHHHHHccCCC---CCchhHHHHHHHHHhCCChhHHH
Q 007573          121 GCIDNDRIDDAFDYFQAMP---ERNTATYNAMISGFLKHGRLEEATRLFEQMPR---RNVISYTAMLDGFMKKGEVDKAR  194 (597)
Q Consensus       121 ~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~  194 (597)
                      ++...|++++|.+.++++.   +.+...+..+...+...|++++|.+.++++.+   .+..++..+...+.+.|+.++|.
T Consensus       474 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~  553 (899)
T TIGR02917       474 IYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAV  553 (899)
T ss_pred             HHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHH
Confidence            9999999999999999876   45667888899999999999999999998864   45678899999999999999999


Q ss_pred             HHHHhccc---CCcchHHHHHHHHHcCCChHHHHHHHhhcCCCCC-CchHHHHHHHHHHhcCCHHHHHHHHhhcCC---C
Q 007573          195 ALSDYMSF---KNVVSWTVMITGYVKNERFCEARELFYRMPDYDK-NVFVVTAMITGFCKVGMLENARLLFERIQP---K  267 (597)
Q Consensus       195 ~~~~~m~~---~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~  267 (597)
                      .+++++..   .+...+..++..+...|++++|..+++.+.+..| +..++..++..|.+.|++++|...|+++.+   .
T Consensus       554 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~  633 (899)
T TIGR02917       554 AWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPD  633 (899)
T ss_pred             HHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence            99999833   3556788899999999999999999999987544 567899999999999999999999998753   4


Q ss_pred             ChhHHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhccchhHHHHHHHHHHHHhCCCCcccHHHHHHH
Q 007573          268 DCVSFNAMIAGYAQNGVAEEALRLFSGMIKMDMQPDDATLVSVFTACSALQLLNEGRQSHVLVIRNGFEANVSVCNAVIT  347 (597)
Q Consensus       268 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  347 (597)
                      +...+..+...+...|++++|...|+++.+.. +.+..++..+...+...|++++|..+++.+.+.+ +.+...+..+..
T Consensus       634 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~  711 (899)
T TIGR02917       634 SALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGD  711 (899)
T ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHH
Confidence            67789999999999999999999999998753 3457788889999999999999999999998876 567788888999


Q ss_pred             HHHhcCCHHHHHHHHhccC--CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHH
Q 007573          348 MYSRCGGILDSELAFRQIH--SPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESM  425 (597)
Q Consensus       348 ~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~  425 (597)
                      .+.+.|++++|...|+.+.  .|+..++..++..+...|++++|.+.++++.+.. +.+...+..+...+...|+.++|.
T Consensus       712 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~  790 (899)
T TIGR02917       712 LYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAI  790 (899)
T ss_pred             HHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHH
Confidence            9999999999999999886  4666788889999999999999999999998764 556778888999999999999999


Q ss_pred             HHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 007573          426 DLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMP-FEA-DTGVWGSLLAACVINLNVELGELAAKKMRELD  503 (597)
Q Consensus       426 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  503 (597)
                      +.|+++.+.  .++++..+..++..+...|+ .+|+.+++++. ..| +...+..++..+...|++++|...++++++.+
T Consensus       791 ~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~  867 (899)
T TIGR02917       791 KHYRTVVKK--APDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIA  867 (899)
T ss_pred             HHHHHHHHh--CCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence            999999874  35568899999999999999 88999998875 344 56678889999999999999999999999999


Q ss_pred             CCCCchHHHHHHHHHhcCCcHHHHHHHHHHHh
Q 007573          504 PQNSAVYVMLSNLYAAAGMWRDVTRVRLLMKE  535 (597)
Q Consensus       504 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  535 (597)
                      |.++.++..++.++.+.|++++|.+++++|++
T Consensus       868 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  899 (899)
T TIGR02917       868 PEAAAIRYHLALALLATGRKAEARKELDKLLN  899 (899)
T ss_pred             CCChHHHHHHHHHHHHcCCHHHHHHHHHHHhC
Confidence            99999999999999999999999999999863

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.96  E-value=7.1e-24  Score=237.59  Aligned_cols=480  Identities=13%  Similarity=0.073  Sum_probs=288.9

Q ss_pred             CCCcchHHHHHHHHHhcCChHHHHHHHhhcCC--CCcchH-----------------HHHHHHHHhCCChhHHHHHHhhC
Q 007573           47 TQYVFVNNAKISALSRAGKISAARQLFDQMTT--KDVITW-----------------NAIITGYWQNGFLQESKNLFQSM  107 (597)
Q Consensus        47 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~-----------------~~li~~~~~~g~~~~A~~~~~~~  107 (597)
                      +.|+.++..++..+.+.|+.++|.+.+++..+  |+...+                 ..+...+...|++++|+..|+++
T Consensus        59 p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~  138 (1157)
T PRK11447         59 PNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASYDKL  138 (1157)
T ss_pred             CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHH
Confidence            67788899999999999999999999999976  443221                 23344678899999999999998


Q ss_pred             CCCCcchHH----HHHHHHHcCCChHHHHHHHccCC---CCChhhHHHHHHHHHcCCChHHHHHHHccCCCCCc------
Q 007573          108 PVKNIVSWN----CMIAGCIDNDRIDDAFDYFQAMP---ERNTATYNAMISGFLKHGRLEEATRLFEQMPRRNV------  174 (597)
Q Consensus       108 ~~~~~~~~~----~ll~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~------  174 (597)
                      .+.++....    .........|+.++|.+.++++.   +.++..+..+...+...|+.++|+..++++.+...      
T Consensus       139 l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa  218 (1157)
T PRK11447        139 FNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAA  218 (1157)
T ss_pred             ccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHH
Confidence            865332221    11222234689999999999988   44667888999999999999999999887642100      


Q ss_pred             -----------------hhH----------------------------------HHHHHHHHhCCChhHHHHHHHhccc-
Q 007573          175 -----------------ISY----------------------------------TAMLDGFMKKGEVDKARALSDYMSF-  202 (597)
Q Consensus       175 -----------------~~~----------------------------------~~li~~~~~~g~~~~A~~~~~~m~~-  202 (597)
                                       ..+                                  ......+...|++++|+..|++... 
T Consensus       219 ~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~  298 (1157)
T PRK11447        219 QLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRA  298 (1157)
T ss_pred             HHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence                             000                                  0113445677889999998888733 


Q ss_pred             -C-CcchHHHHHHHHHcCCChHHHHHHHhhcCCCCCCch---HH------------HHHHHHHHhcCCHHHHHHHHhhcC
Q 007573          203 -K-NVVSWTVMITGYVKNERFCEARELFYRMPDYDKNVF---VV------------TAMITGFCKVGMLENARLLFERIQ  265 (597)
Q Consensus       203 -~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~------------~~l~~~~~~~g~~~~A~~~~~~~~  265 (597)
                       | +...+..+..++.+.|++++|+..|+++.+..|+..   .+            ......+.+.|++++|+..|+++.
T Consensus       299 ~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al  378 (1157)
T PRK11447        299 NPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQAR  378 (1157)
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence             3 567788888899999999999999998887666432   11            122456778899999999998865


Q ss_pred             C---CChhHHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCC-HHHHHHHHHHH---------------------------
Q 007573          266 P---KDCVSFNAMIAGYAQNGVAEEALRLFSGMIKMDMQPD-DATLVSVFTAC---------------------------  314 (597)
Q Consensus       266 ~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~---------------------------  314 (597)
                      .   .+...+..+...+...|++++|++.|++..+.  .|+ ...+..+...+                           
T Consensus       379 ~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~--~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~  456 (1157)
T PRK11447        379 QVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRM--DPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIE  456 (1157)
T ss_pred             HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHH
Confidence            4   45567788888899999999999999988874  333 22332222222                           


Q ss_pred             ---------------hccchhHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHhccC---CCChhhHHHH
Q 007573          315 ---------------SALQLLNEGRQSHVLVIRNGFEANVSVCNAVITMYSRCGGILDSELAFRQIH---SPNLVSWNTI  376 (597)
Q Consensus       315 ---------------~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l  376 (597)
                                     ...|+.++|...++.+++.. +.+..++..+...|.+.|++++|...++++.   +.+...+..+
T Consensus       457 ~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~  535 (1157)
T PRK11447        457 RSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAY  535 (1157)
T ss_pred             HHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence                           23455555555555555443 2234444555555555555555555555442   2222233222


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHCCCCCChH---------HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHH
Q 007573          377 IAAFAQHGHYEKALIFFSQMGLNGFDPDGI---------TFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCL  447 (597)
Q Consensus       377 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---------~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l  447 (597)
                      ...+...|+.++|+..++.+......++..         .+......+...|+.++|.++++      ..+.+...+..+
T Consensus       536 al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~------~~p~~~~~~~~L  609 (1157)
T PRK11447        536 GLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLR------QQPPSTRIDLTL  609 (1157)
T ss_pred             HHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHH------hCCCCchHHHHH
Confidence            223333444444444433322111000000         00111222333334444443332      012233444455


Q ss_pred             HHHHhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcHH
Q 007573          448 VDILSRAGQLEKAWQITQGMP-FEA-DTGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRD  525 (597)
Q Consensus       448 ~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~  525 (597)
                      ...+.+.|++++|++.|++.. ..| +...+..++..+...|++++|++.++++.+..|+++..+..++.++...|++++
T Consensus       610 a~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~e  689 (1157)
T PRK11447        610 ADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAA  689 (1157)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHH
Confidence            555555566666665555543 233 344555555555555666666666665555555555555555555656666666


Q ss_pred             HHHHHHHHHh
Q 007573          526 VTRVRLLMKE  535 (597)
Q Consensus       526 A~~~~~~~~~  535 (597)
                      |.++++++..
T Consensus       690 A~~~~~~al~  699 (1157)
T PRK11447        690 AQRTFNRLIP  699 (1157)
T ss_pred             HHHHHHHHhh
Confidence            6666655554

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.95  E-value=6.2e-23  Score=230.07  Aligned_cols=406  Identities=10%  Similarity=0.036  Sum_probs=320.2

Q ss_pred             HHHHHcCCChHHHHHHHccCC---CCChhhHHHHHHHHHcCCChHHHHHHHccCCC--CCc---hhHH------------
Q 007573          119 IAGCIDNDRIDDAFDYFQAMP---ERNTATYNAMISGFLKHGRLEEATRLFEQMPR--RNV---ISYT------------  178 (597)
Q Consensus       119 l~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~---~~~~------------  178 (597)
                      ...+...|++++|...|++..   +.+..++..|..+|.+.|++++|+..|++..+  |+.   ..|.            
T Consensus       276 G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~  355 (1157)
T PRK11447        276 GLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLI  355 (1157)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHH
Confidence            345667899999999998877   44778888999999999999999999988764  321   1121            


Q ss_pred             HHHHHHHhCCChhHHHHHHHhccc---CCcchHHHHHHHHHcCCChHHHHHHHhhcCCCCCC-chHHHHHHHHHHhcCCH
Q 007573          179 AMLDGFMKKGEVDKARALSDYMSF---KNVVSWTVMITGYVKNERFCEARELFYRMPDYDKN-VFVVTAMITGFCKVGML  254 (597)
Q Consensus       179 ~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~  254 (597)
                      .....+.+.|++++|+..|+++..   .+...+..+..++...|++++|++.|+++.+..|+ ...+..+...|. .++.
T Consensus       356 ~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~-~~~~  434 (1157)
T PRK11447        356 QQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR-QQSP  434 (1157)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-hcCH
Confidence            224567789999999999998843   34567778889999999999999999999887775 445666666664 4678


Q ss_pred             HHHHHHHhhcCCCC------------hhHHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCC-HHHHHHHHHHHhccchhH
Q 007573          255 ENARLLFERIQPKD------------CVSFNAMIAGYAQNGVAEEALRLFSGMIKMDMQPD-DATLVSVFTACSALQLLN  321 (597)
Q Consensus       255 ~~A~~~~~~~~~~~------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~  321 (597)
                      ++|...++.+....            ...+..+...+...|++++|++.|++..+.  .|+ ...+..+...+...|+.+
T Consensus       435 ~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~--~P~~~~~~~~LA~~~~~~G~~~  512 (1157)
T PRK11447        435 EKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL--DPGSVWLTYRLAQDLRQAGQRS  512 (1157)
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHH
Confidence            99999888776432            224556777888999999999999999885  454 455667788899999999


Q ss_pred             HHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHhccCCC----Chh---------hHHHHHHHHHHcCCHHH
Q 007573          322 EGRQSHVLVIRNGFEANVSVCNAVITMYSRCGGILDSELAFRQIHSP----NLV---------SWNTIIAAFAQHGHYEK  388 (597)
Q Consensus       322 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~---------~~~~li~~~~~~g~~~~  388 (597)
                      +|...++.+++.. +.+...+..+...+...|+.++|...++.+...    +..         .+..+...+...|+.++
T Consensus       513 ~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~e  591 (1157)
T PRK11447        513 QADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAE  591 (1157)
T ss_pred             HHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHH
Confidence            9999999998764 445555666666778899999999999988632    111         12345667888999999


Q ss_pred             HHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC
Q 007573          389 ALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMP  468 (597)
Q Consensus       389 A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  468 (597)
                      |+.+++.     .+++...+..+...+.+.|++++|+..|+.+.+.  -+.+...+..++.+|...|++++|++.++...
T Consensus       592 A~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~--~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll  664 (1157)
T PRK11447        592 AEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR--EPGNADARLGLIEVDIAQGDLAAARAQLAKLP  664 (1157)
T ss_pred             HHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence            9999872     2455667778888999999999999999999864  23357889999999999999999999999876


Q ss_pred             -CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC------chHHHHHHHHHhcCCcHHHHHHHHHHHh
Q 007573          469 -FEA-DTGVWGSLLAACVINLNVELGELAAKKMRELDPQNS------AVYVMLSNLYAAAGMWRDVTRVRLLMKE  535 (597)
Q Consensus       469 -~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~  535 (597)
                       ..| +...+..+..++...|++++|.++++++++..|+++      ..+..++.++...|++++|++.|++...
T Consensus       665 ~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~  739 (1157)
T PRK11447        665 ATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV  739 (1157)
T ss_pred             ccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence             445 456777888889999999999999999999877654      3566779999999999999999999864

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.94  E-value=1.4e-23  Score=199.55  Aligned_cols=434  Identities=12%  Similarity=0.120  Sum_probs=304.6

Q ss_pred             HHHHHHHHHhCCChhHHHHHHhhCCCC---CcchHHHHHHHHHcCCChHHHHHHHccCC---CCChhhHHHHHHHHHcCC
Q 007573           84 WNAIITGYWQNGFLQESKNLFQSMPVK---NIVSWNCMIAGCIDNDRIDDAFDYFQAMP---ERNTATYNAMISGFLKHG  157 (597)
Q Consensus        84 ~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g  157 (597)
                      ...|.+-..+.|++.+|.+.....-+.   +......+-..+.+..+++.....-....   +.-..+|..+.+.+...|
T Consensus        51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~kerg  130 (966)
T KOG4626|consen   51 RLELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKERG  130 (966)
T ss_pred             HHHHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHhc
Confidence            334445555666666666655444332   12222222233444444443332222222   223456666777777777


Q ss_pred             ChHHHHHHHccCCCC---CchhHHHHHHHHHhCCChhHHHHHHHhcccCCc--ch-HHHHHHHHHcCCChHHHHHHHhhc
Q 007573          158 RLEEATRLFEQMPRR---NVISYTAMLDGFMKKGEVDKARALSDYMSFKNV--VS-WTVMITGYVKNERFCEARELFYRM  231 (597)
Q Consensus       158 ~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~~-~~~ll~~~~~~g~~~~a~~~~~~~  231 (597)
                      ++.+|+.+++.+.+.   .+..|..+..++...|+.+.|.+.|.....-|+  .. ...+....-..|++++|...|.++
T Consensus       131 ~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYlkA  210 (966)
T KOG4626|consen  131 QLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYLKA  210 (966)
T ss_pred             hHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHHHH
Confidence            777777777766542   345666777777777777777777666643332  22 223334444567777777777776


Q ss_pred             CCCCCCc-hHHHHHHHHHHhcCCHHHHHHHHhhcCCCCh---hHHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCC-HHH
Q 007573          232 PDYDKNV-FVVTAMITGFCKVGMLENARLLFERIQPKDC---VSFNAMIAGYAQNGVAEEALRLFSGMIKMDMQPD-DAT  306 (597)
Q Consensus       232 ~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~  306 (597)
                      .+..|.. .+|+.|...+-..|++..|+..|++..+-|+   .+|-.|...|...+.+++|+..|.+....  .|+ ...
T Consensus       211 i~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l--rpn~A~a  288 (966)
T KOG4626|consen  211 IETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL--RPNHAVA  288 (966)
T ss_pred             HhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc--CCcchhh
Confidence            6665643 3566677777777777777777777655433   46677777777777777777777766653  443 334


Q ss_pred             HHHHHHHHhccchhHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHhccC---CCChhhHHHHHHHHHHc
Q 007573          307 LVSVFTACSALQLLNEGRQSHVLVIRNGFEANVSVCNAVITMYSRCGGILDSELAFRQIH---SPNLVSWNTIIAAFAQH  383 (597)
Q Consensus       307 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~  383 (597)
                      +..+...|...|.++.|...++..++.. +.-...|+.|..++-..|++.+|+..+.+..   +....+.+.+...|...
T Consensus       289 ~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~  367 (966)
T KOG4626|consen  289 HGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQ  367 (966)
T ss_pred             ccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh
Confidence            4455555666777777777777776654 3346678888888888899999998888776   44566888899999999


Q ss_pred             CCHHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHH
Q 007573          384 GHYEKALIFFSQMGLNGFDPD-GITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPS-SEHYTCLVDILSRAGQLEKAW  461 (597)
Q Consensus       384 g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~  461 (597)
                      |.+++|..+|....+  +.|. ...++.|...|-+.|++++|+..+++..   .++|+ ...|+.+...|...|+...|.
T Consensus       368 ~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal---rI~P~fAda~~NmGnt~ke~g~v~~A~  442 (966)
T KOG4626|consen  368 GKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL---RIKPTFADALSNMGNTYKEMGDVSAAI  442 (966)
T ss_pred             ccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH---hcCchHHHHHHhcchHHHHhhhHHHHH
Confidence            999999999998876  4666 5678999999999999999999999887   67888 789999999999999999999


Q ss_pred             HHHhhCC-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcHH
Q 007573          462 QITQGMP-FEAD-TGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRD  525 (597)
Q Consensus       462 ~~~~~~~-~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~  525 (597)
                      +.+.+.. +.|. ....+.|.+.|...|+..+|+..|+.++++.|+.+.+|-.++.++.--.+|.+
T Consensus       443 q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D  508 (966)
T KOG4626|consen  443 QCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTD  508 (966)
T ss_pred             HHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcccc
Confidence            9998866 6675 56899999999999999999999999999999999999999888776666655

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.92  E-value=1.5e-20  Score=201.33  Aligned_cols=478  Identities=12%  Similarity=0.048  Sum_probs=305.7

Q ss_pred             CCCcchHHHHHHHHHhcCChHHHHHHHhhcCC--CCcchHHHHHHHHHhCCChhHHHHHHhhCCCC---CcchHHHHHHH
Q 007573           47 TQYVFVNNAKISALSRAGKISAARQLFDQMTT--KDVITWNAIITGYWQNGFLQESKNLFQSMPVK---NIVSWNCMIAG  121 (597)
Q Consensus        47 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~  121 (597)
                      +.++.++..|...|.+.|++++|+..+++..+  |+-..+..++..+   +++++|..+|+++...   +..++..+...
T Consensus        75 P~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i---~~~~kA~~~ye~l~~~~P~n~~~~~~la~~  151 (987)
T PRK09782         75 PDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAI---PVEVKSVTTVEELLAQQKACDAVPTLRCRS  151 (987)
T ss_pred             CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh---ccChhHHHHHHHHHHhCCCChhHHHHHHHH
Confidence            56677788888888888888888888888876  3323333333222   7788888888888643   45555555554


Q ss_pred             --------HHcCCChHHHHHHHccCCCC--ChhhHHH-HHHHHHcCCChHHHHHHHccCCCC---CchhHHHHHHHHHh-
Q 007573          122 --------CIDNDRIDDAFDYFQAMPER--NTATYNA-MISGFLKHGRLEEATRLFEQMPRR---NVISYTAMLDGFMK-  186 (597)
Q Consensus       122 --------~~~~~~~~~A~~~~~~~~~~--~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~-  186 (597)
                              |.+.+...++++  .+...+  ++.+... +..+|.+.|++++|++++.++.+.   +..-...|..+|.. 
T Consensus       152 ~~~~~~l~y~q~eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~pl~~~~~~~L~~ay~q~  229 (987)
T PRK09782        152 EVGQNALRLAQLPVARAQLN--DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNTLSAAERRQWFDVLLAG  229 (987)
T ss_pred             hhccchhhhhhHHHHHHHHH--HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Confidence                    555544444444  222233  2333333 377777888888888887777642   22234455556665 


Q ss_pred             CCChhHHHHHHHhcccCCcchHHHHHHHHHcCCChHHHHHHHhhcCCCC---CCchH-----------------------
Q 007573          187 KGEVDKARALSDYMSFKNVVSWTVMITGYVKNERFCEARELFYRMPDYD---KNVFV-----------------------  240 (597)
Q Consensus       187 ~g~~~~A~~~~~~m~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~~~~-----------------------  240 (597)
                      .++ +++..+++...+.+...+..++..+.+.|+.++|.++++.+....   |...+                       
T Consensus       230 l~~-~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~  308 (987)
T PRK09782        230 QLD-DRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQF  308 (987)
T ss_pred             hCH-HHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhh
Confidence            355 666666554444466666777777777777777777777765421   11000                       


Q ss_pred             -------HHHHHHHHHhcCCHHHHHHHHhhcCC--------------------------------CChhHHHHHHHHHHH
Q 007573          241 -------VTAMITGFCKVGMLENARLLFERIQP--------------------------------KDCVSFNAMIAGYAQ  281 (597)
Q Consensus       241 -------~~~l~~~~~~~g~~~~A~~~~~~~~~--------------------------------~~~~~~~~li~~~~~  281 (597)
                             .-.++..+.+.++++.++++...-+.                                .+......+.....+
T Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~  388 (987)
T PRK09782        309 ADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQ  388 (987)
T ss_pred             HHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence                   11123344444444444433221100                                011112222223334


Q ss_pred             cCChhHHHHHHHHhHHC---------------------------------------------------------------
Q 007573          282 NGVAEEALRLFSGMIKM---------------------------------------------------------------  298 (597)
Q Consensus       282 ~g~~~~A~~~~~~m~~~---------------------------------------------------------------  298 (597)
                      .|+.++|.++|++....                                                               
T Consensus       389 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al  468 (987)
T PRK09782        389 NGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLL  468 (987)
T ss_pred             cccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhc
Confidence            44444444444443320                                                               


Q ss_pred             CCCC---CHHHHHHHHHHHhccchhHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHhccC--CCChhhH
Q 007573          299 DMQP---DDATLVSVFTACSALQLLNEGRQSHVLVIRNGFEANVSVCNAVITMYSRCGGILDSELAFRQIH--SPNLVSW  373 (597)
Q Consensus       299 g~~p---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~  373 (597)
                      +..|   +...+..+..++.. ++.++|...+.......  |+......+...+...|++++|...|+++.  +++...+
T Consensus       469 ~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~  545 (987)
T PRK09782        469 GDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDL  545 (987)
T ss_pred             ccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHH
Confidence            0111   22233333333333 55666776666655543  343333334455568899999999998765  3555567


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhh
Q 007573          374 NTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSR  453 (597)
Q Consensus       374 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~  453 (597)
                      ..+...+.+.|+.++|...+++..+.. +++...+..+.......|++++|...+++..+   ..|+...+..+..++.+
T Consensus       546 ~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~---l~P~~~a~~~LA~~l~~  621 (987)
T PRK09782        546 LAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLN---IAPSANAYVARATIYRQ  621 (987)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHH---hCCCHHHHHHHHHHHHH
Confidence            777788888999999999999988754 22233333444455567999999999998875   35678889999999999


Q ss_pred             cCCHHHHHHHHhhCC-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcHHHHHHHH
Q 007573          454 AGQLEKAWQITQGMP-FEAD-TGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRVRL  531 (597)
Q Consensus       454 ~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~  531 (597)
                      .|+.++|+..+++.. ..|+ ...+..+..++...|++++|+..++++++++|+++.++..++.++...|++++|...++
T Consensus       622 lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~  701 (987)
T PRK09782        622 RHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYAR  701 (987)
T ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            999999999998876 5564 56788888899999999999999999999999999999999999999999999999999


Q ss_pred             HHHhCC
Q 007573          532 LMKEQG  537 (597)
Q Consensus       532 ~~~~~~  537 (597)
                      +..+..
T Consensus       702 ~Al~l~  707 (987)
T PRK09782        702 LVIDDI  707 (987)
T ss_pred             HHHhcC
Confidence            987644

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.92  E-value=3.5e-22  Score=190.09  Aligned_cols=416  Identities=11%  Similarity=0.144  Sum_probs=342.9

Q ss_pred             HHHHHHHHHcCCChHHHHHHHccCCCCC---hhhHHHHHHHHHcCCChHHHHHHHccCCC---CCchhHHHHHHHHHhCC
Q 007573          115 WNCMIAGCIDNDRIDDAFDYFQAMPERN---TATYNAMISGFLKHGRLEEATRLFEQMPR---RNVISYTAMLDGFMKKG  188 (597)
Q Consensus       115 ~~~ll~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g  188 (597)
                      ...|..-..+.|++.+|++.-...-..|   ....-.+-.++....+++....--....+   .-..+|..+.+.+-..|
T Consensus        51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~kerg  130 (966)
T KOG4626|consen   51 RLELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKERG  130 (966)
T ss_pred             HHHHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHhc
Confidence            4455556678899999998665544222   22333334556666666655443333222   23568999999999999


Q ss_pred             ChhHHHHHHHhcccC---CcchHHHHHHHHHcCCChHHHHHHHhhcCCCCCCchH-HHHHHHHHHhcCCHHHHHHHHhhc
Q 007573          189 EVDKARALSDYMSFK---NVVSWTVMITGYVKNERFCEARELFYRMPDYDKNVFV-VTAMITGFCKVGMLENARLLFERI  264 (597)
Q Consensus       189 ~~~~A~~~~~~m~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~  264 (597)
                      ++++|+.+++.+++.   .+..|..+..++...|+.+.|.+.|.+..++.|+... .+.+...+...|++++|...+.+.
T Consensus       131 ~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYlkA  210 (966)
T KOG4626|consen  131 QLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYLKA  210 (966)
T ss_pred             hHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHHHH
Confidence            999999999999543   4689999999999999999999999999999887654 455677777899999999988876


Q ss_pred             CCCC---hhHHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCC-HHHHHHHHHHHhccchhHHHHHHHHHHHHhCCCCccc
Q 007573          265 QPKD---CVSFNAMIAGYAQNGVAEEALRLFSGMIKMDMQPD-DATLVSVFTACSALQLLNEGRQSHVLVIRNGFEANVS  340 (597)
Q Consensus       265 ~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  340 (597)
                      .+.+   .++|+.|...+..+|+...|+..|++..+.  .|+ ...|..+-..+...+.++.|...+..+.... +....
T Consensus       211 i~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-pn~A~  287 (966)
T KOG4626|consen  211 IETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR-PNHAV  287 (966)
T ss_pred             HhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-Ccchh
Confidence            6533   368999999999999999999999998874  554 3467778888888888999988888776654 44567


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHhccC--CCC-hhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHh
Q 007573          341 VCNAVITMYSRCGGILDSELAFRQIH--SPN-LVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPD-GITFLSLLSACG  416 (597)
Q Consensus       341 ~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~  416 (597)
                      ++..+...|..+|.++-|+..+++..  .|+ ...|+.|..++...|+..+|...+.+....  .|+ ....+.|...+.
T Consensus       288 a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l--~p~hadam~NLgni~~  365 (966)
T KOG4626|consen  288 AHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRL--CPNHADAMNNLGNIYR  365 (966)
T ss_pred             hccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHh--CCccHHHHHHHHHHHH
Confidence            78888889999999999999999887  344 569999999999999999999999998875  454 668889999999


Q ss_pred             ccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCCC-HHHHHHHHHHHHhcCCHHHHH
Q 007573          417 HAGKVNESMDLFELMVKVYGIIPS-SEHYTCLVDILSRAGQLEKAWQITQGMP-FEAD-TGVWGSLLAACVINLNVELGE  493 (597)
Q Consensus       417 ~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~g~~~~a~  493 (597)
                      ..|.+++|..+|....   .+.|. ....+.|...|...|++++|...+++.. ++|+ ...++.++..|...|+.+.|+
T Consensus       366 E~~~~e~A~~ly~~al---~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~  442 (966)
T KOG4626|consen  366 EQGKIEEATRLYLKAL---EVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAI  442 (966)
T ss_pred             HhccchHHHHHHHHHH---hhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHH
Confidence            9999999999999887   44566 6788999999999999999999999876 8887 558999999999999999999


Q ss_pred             HHHHHHHhcCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHhCCC
Q 007573          494 LAAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRVRLLMKEQGV  538 (597)
Q Consensus       494 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  538 (597)
                      +.+.+++..+|.-..++..|+.+|-..|+..+|+.-|+...+..+
T Consensus       443 q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkP  487 (966)
T KOG4626|consen  443 QCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKP  487 (966)
T ss_pred             HHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCC
Confidence            999999999999999999999999999999999999999876443

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.91  E-value=1e-19  Score=195.03  Aligned_cols=441  Identities=10%  Similarity=0.025  Sum_probs=309.6

Q ss_pred             HHHHHhCCChhHHHHHHhhCCCC---CcchHHHHHHHHHc-CCChHHHHHHHccCCCCChhhHHHHHHHHHcCCChHHHH
Q 007573           88 ITGYWQNGFLQESKNLFQSMPVK---NIVSWNCMIAGCID-NDRIDDAFDYFQAMPERNTATYNAMISGFLKHGRLEEAT  163 (597)
Q Consensus        88 i~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~  163 (597)
                      ...|.+.|++++|+.++.++.+.   +......|..+|.. .++ +++..+++...+.++.++..++..|.+.|+.++|.
T Consensus       189 ~rlY~~l~dw~~Ai~lL~~L~k~~pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~  267 (987)
T PRK09782        189 LQRAIYLKQWSQADTLYNEARQQNTLSAAERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSRITYATALAYRGEKARLQ  267 (987)
T ss_pred             HHHHHHHhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHH
Confidence            55666666666666666666543   33334444455555 244 55655555433456666667777777777777777


Q ss_pred             HHHccCCC-----CCch------------------------------hHHHHHHHHHhCCChhHHHHHHHhc--------
Q 007573          164 RLFEQMPR-----RNVI------------------------------SYTAMLDGFMKKGEVDKARALSDYM--------  200 (597)
Q Consensus       164 ~~~~~~~~-----~~~~------------------------------~~~~li~~~~~~g~~~~A~~~~~~m--------  200 (597)
                      ++++++..     |+..                              ....++..+.+.++++.+.++...-        
T Consensus       268 ~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  347 (987)
T PRK09782        268 HYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEE  347 (987)
T ss_pred             HHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHH
Confidence            77766642     1110                              1112245555566666555443211        


Q ss_pred             -----------------------ccC-CcchHHHHHHHHHcCCChHHHHHHHhhcCCCCCCc----hHHHHHHHHHHhcC
Q 007573          201 -----------------------SFK-NVVSWTVMITGYVKNERFCEARELFYRMPDYDKNV----FVVTAMITGFCKVG  252 (597)
Q Consensus       201 -----------------------~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~----~~~~~l~~~~~~~g  252 (597)
                                             ..| +....-.+.-...+.|+.++|.++++......++.    ....-++..|.+.+
T Consensus       348 r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~  427 (987)
T PRK09782        348 RYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHP  427 (987)
T ss_pred             HHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCC
Confidence                                   001 22222223334456788888888888887643332    33446777777766


Q ss_pred             C---HHHHHHH-------------------------HhhcCC---C--ChhHHHHHHHHHHHcCChhHHHHHHHHhHHCC
Q 007573          253 M---LENARLL-------------------------FERIQP---K--DCVSFNAMIAGYAQNGVAEEALRLFSGMIKMD  299 (597)
Q Consensus       253 ~---~~~A~~~-------------------------~~~~~~---~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g  299 (597)
                      .   ..++..+                         +.....   .  +...|..+..++.. +++++|+..+.+.... 
T Consensus       428 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~-  505 (987)
T PRK09782        428 YLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR-  505 (987)
T ss_pred             cccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh-
Confidence            5   2333222                         222221   2  56678888888877 8899999988887765 


Q ss_pred             CCCCHHHHHHHHHHHhccchhHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHhccCCCChh---hHHHH
Q 007573          300 MQPDDATLVSVFTACSALQLLNEGRQSHVLVIRNGFEANVSVCNAVITMYSRCGGILDSELAFRQIHSPNLV---SWNTI  376 (597)
Q Consensus       300 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~l  376 (597)
                       .|+......+..++...|++++|...++.+...  +|+...+..+...+.+.|+.++|...++.....++.   .+..+
T Consensus       506 -~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~L  582 (987)
T PRK09782        506 -QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWL  582 (987)
T ss_pred             -CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHH
Confidence             477665545555567899999999999987554  444555667788899999999999999887743322   33333


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcC
Q 007573          377 IAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPS-SEHYTCLVDILSRAG  455 (597)
Q Consensus       377 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g  455 (597)
                      .......|++++|+..+++..+.  .|+...+..+..++.+.|++++|...+++....   .|+ ...+..+..++...|
T Consensus       583 a~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l---~Pd~~~a~~nLG~aL~~~G  657 (987)
T PRK09782        583 HAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALEL---EPNNSNYQAALGYALWDSG  657 (987)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHCC
Confidence            33444569999999999999875  577888999999999999999999999998853   454 778889999999999


Q ss_pred             CHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcHHHHHHHHHH
Q 007573          456 QLEKAWQITQGMP-FEA-DTGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRVRLLM  533 (597)
Q Consensus       456 ~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  533 (597)
                      ++++|++.+++.. ..| +...+..+..++...|++++|+..++++++++|++..+....++......+++.|.+-+++.
T Consensus       658 ~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~  737 (987)
T PRK09782        658 DIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRR  737 (987)
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence            9999999999876 555 56789999999999999999999999999999999999999999999999999999998887


Q ss_pred             HhCCCc
Q 007573          534 KEQGVT  539 (597)
Q Consensus       534 ~~~~~~  539 (597)
                      ...++.
T Consensus       738 ~~~~~~  743 (987)
T PRK09782        738 WTFSFD  743 (987)
T ss_pred             hhcCcc
Confidence            765543

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.90  E-value=3.7e-20  Score=195.16  Aligned_cols=414  Identities=12%  Similarity=0.004  Sum_probs=272.6

Q ss_pred             HHHHHHHHHcCCChHHHHHHHccCC--CCChhhHHHHHHHHHcCCChHHHHHHHccCCCC---CchhHHHHHHHHHhCCC
Q 007573          115 WNCMIAGCIDNDRIDDAFDYFQAMP--ERNTATYNAMISGFLKHGRLEEATRLFEQMPRR---NVISYTAMLDGFMKKGE  189 (597)
Q Consensus       115 ~~~ll~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~  189 (597)
                      +......+.+.|++++|+..|++..  .|++..|..+..+|.+.|++++|+..++...+.   +...|..+..+|...|+
T Consensus       130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~  209 (615)
T TIGR00990       130 LKEKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGK  209 (615)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC
Confidence            3344555666677777777776655  455666666677777777777777777665532   34466666777777777


Q ss_pred             hhHHHHHHHhcccCCc---chHHHHHHHHHcCCChHHHHHHHhhcCCCCCCchHHHHHHHHHHhcCCHHHHHHHHhhcCC
Q 007573          190 VDKARALSDYMSFKNV---VSWTVMITGYVKNERFCEARELFYRMPDYDKNVFVVTAMITGFCKVGMLENARLLFERIQP  266 (597)
Q Consensus       190 ~~~A~~~~~~m~~~~~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  266 (597)
                      +++|+..|......+.   .....++..+........+...++.-   +++...+..+...+ .....+....-+....+
T Consensus       210 ~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~---~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  285 (615)
T TIGR00990       210 YADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETK---PENLPSVTFVGNYL-QSFRPKPRPAGLEDSNE  285 (615)
T ss_pred             HHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcC---CCCCCCHHHHHHHH-HHccCCcchhhhhcccc
Confidence            7777666654422111   11111111111111112222222211   11222222222222 11111111111111111


Q ss_pred             CCh---hHHHHHHHH---HHHcCChhHHHHHHHHhHHCC-CCCC-HHHHHHHHHHHhccchhHHHHHHHHHHHHhCCCCc
Q 007573          267 KDC---VSFNAMIAG---YAQNGVAEEALRLFSGMIKMD-MQPD-DATLVSVFTACSALQLLNEGRQSHVLVIRNGFEAN  338 (597)
Q Consensus       267 ~~~---~~~~~li~~---~~~~g~~~~A~~~~~~m~~~g-~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~  338 (597)
                      .+.   ..+..+...   ....+++++|++.|++..+.+ ..|+ ...+..+...+...|++++|...++.+++.. +..
T Consensus       286 ~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~  364 (615)
T TIGR00990       286 LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRV  364 (615)
T ss_pred             cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCc
Confidence            111   111111111   123467899999999988765 3343 3456666667778899999999999988764 344


Q ss_pred             ccHHHHHHHHHHhcCCHHHHHHHHhccC---CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHH
Q 007573          339 VSVCNAVITMYSRCGGILDSELAFRQIH---SPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSAC  415 (597)
Q Consensus       339 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~  415 (597)
                      ...+..+...+...|++++|...|+...   +.+...|..+...+...|++++|+..|++..+.. +.+...+..+..++
T Consensus       365 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~  443 (615)
T TIGR00990       365 TQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQ  443 (615)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHH
Confidence            5678888889999999999999998775   4567789999999999999999999999998753 33466777788889


Q ss_pred             hccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCCCH-H-------HHHHHHHHHHhc
Q 007573          416 GHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMP-FEADT-G-------VWGSLLAACVIN  486 (597)
Q Consensus       416 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~-~-------~~~~l~~~~~~~  486 (597)
                      .+.|++++|...|+...+.  .+.++..+..+..++...|++++|.+.|++.. ..|+. .       .++..+..+...
T Consensus       444 ~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~  521 (615)
T TIGR00990       444 YKEGSIASSMATFRRCKKN--FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWK  521 (615)
T ss_pred             HHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHh
Confidence            9999999999999998863  33457889999999999999999999998854 44431 1       112222234456


Q ss_pred             CCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHhC
Q 007573          487 LNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRVRLLMKEQ  536 (597)
Q Consensus       487 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  536 (597)
                      |++++|...++++++++|++..++..++.++...|++++|++.+++..+.
T Consensus       522 ~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l  571 (615)
T TIGR00990       522 QDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAEL  571 (615)
T ss_pred             hhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            99999999999999999999889999999999999999999999998764

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.87  E-value=1.4e-19  Score=181.28  Aligned_cols=301  Identities=11%  Similarity=0.059  Sum_probs=202.3

Q ss_pred             HHHHHcCCChHHHHHHHhhcCCCCCC-chHHHHHHHHHHhcCCHHHHHHHHhhcCCCC-------hhHHHHHHHHHHHcC
Q 007573          212 ITGYVKNERFCEARELFYRMPDYDKN-VFVVTAMITGFCKVGMLENARLLFERIQPKD-------CVSFNAMIAGYAQNG  283 (597)
Q Consensus       212 l~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~li~~~~~~g  283 (597)
                      ...+...|++++|...|..+.+..|+ ..++..+...+.+.|++++|..+++.+....       ...+..++..|.+.|
T Consensus        42 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g  121 (389)
T PRK11788         42 GLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAG  121 (389)
T ss_pred             HHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCC
Confidence            33445566677777777776665553 3356666666666666666666666654321       134556666666666


Q ss_pred             ChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhccchhHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHh
Q 007573          284 VAEEALRLFSGMIKMDMQPDDATLVSVFTACSALQLLNEGRQSHVLVIRNGFEANVSVCNAVITMYSRCGGILDSELAFR  363 (597)
Q Consensus       284 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~  363 (597)
                      ++++|+.+|+++.+.. +++..++..+...+...|++++|...++.+.+.+..+....                      
T Consensus       122 ~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~----------------------  178 (389)
T PRK11788        122 LLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVE----------------------  178 (389)
T ss_pred             CHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHH----------------------
Confidence            6666666666665531 22344444455555555555555555554444321110000                      


Q ss_pred             ccCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHH
Q 007573          364 QIHSPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEH  443 (597)
Q Consensus       364 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~  443 (597)
                           ....+..+...+...|++++|...|+++.+.. +.+...+..+...+.+.|++++|.++++++.+. +.......
T Consensus       179 -----~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~  251 (389)
T PRK11788        179 -----IAHFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQ-DPEYLSEV  251 (389)
T ss_pred             -----HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-ChhhHHHH
Confidence                 01134556667778888899999888887653 233556777778888899999999999888754 21112456


Q ss_pred             HHHHHHHHhhcCCHHHHHHHHhhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHh---
Q 007573          444 YTCLVDILSRAGQLEKAWQITQGMP-FEADTGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAA---  519 (597)
Q Consensus       444 ~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~---  519 (597)
                      +..++.+|.+.|++++|.+.++++. ..|+...+..++..+...|++++|...++++++..|++.. +..+...+..   
T Consensus       252 ~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~-~~~l~~~~~~~~~  330 (389)
T PRK11788        252 LPKLMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRG-FHRLLDYHLAEAE  330 (389)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHH-HHHHHHHhhhccC
Confidence            7888899999999999999998876 5677777788888999999999999999999999988764 4455555443   


Q ss_pred             cCCcHHHHHHHHHHHhCCCccCCC
Q 007573          520 AGMWRDVTRVRLLMKEQGVTKQCA  543 (597)
Q Consensus       520 ~g~~~~A~~~~~~~~~~~~~~~~~  543 (597)
                      .|+.+++..++++|.++++++.|.
T Consensus       331 ~g~~~~a~~~~~~~~~~~~~~~p~  354 (389)
T PRK11788        331 EGRAKESLLLLRDLVGEQLKRKPR  354 (389)
T ss_pred             CccchhHHHHHHHHHHHHHhCCCC
Confidence            568999999999999999888886

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.86  E-value=3.2e-18  Score=179.83  Aligned_cols=324  Identities=10%  Similarity=-0.039  Sum_probs=224.7

Q ss_pred             HHHHHHHHHhCCChhHHHHHHHhcc---cCCcchHHHHHHHHHcCCChHHHHHHHhhcCCCCCC-chHHHHHHHHHHhcC
Q 007573          177 YTAMLDGFMKKGEVDKARALSDYMS---FKNVVSWTVMITGYVKNERFCEARELFYRMPDYDKN-VFVVTAMITGFCKVG  252 (597)
Q Consensus       177 ~~~li~~~~~~g~~~~A~~~~~~m~---~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~l~~~~~~~g  252 (597)
                      ...++..+.+.|++++|+.+++...   ..+...+..++.+....|++++|...++.+....|+ ...+..+...+.+.|
T Consensus        45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g  124 (656)
T PRK15174         45 IILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSK  124 (656)
T ss_pred             HHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcC
Confidence            3445566667777777777776662   223445555666666677777777777777776664 445666677777777


Q ss_pred             CHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhccchhHHHHHHHHH
Q 007573          253 MLENARLLFERIQP---KDCVSFNAMIAGYAQNGVAEEALRLFSGMIKMDMQPDDATLVSVFTACSALQLLNEGRQSHVL  329 (597)
Q Consensus       253 ~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~  329 (597)
                      ++++|...+++...   .+...+..++..+...|++++|...++++......+.. .+.. +..+...|++++|...+..
T Consensus       125 ~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~-a~~~-~~~l~~~g~~~eA~~~~~~  202 (656)
T PRK15174        125 QYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGD-MIAT-CLSFLNKSRLPEDHDLARA  202 (656)
T ss_pred             CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHH-HHHH-HHHHHHcCCHHHHHHHHHH
Confidence            77777777776543   34556777777777777777777777776654322222 2222 2335667777777777777


Q ss_pred             HHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHhccC---CCChhhHHHHHHHHHHcCCHHH----HHHHHHHHHHCCCC
Q 007573          330 VIRNGFEANVSVCNAVITMYSRCGGILDSELAFRQIH---SPNLVSWNTIIAAFAQHGHYEK----ALIFFSQMGLNGFD  402 (597)
Q Consensus       330 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~----A~~~~~~m~~~g~~  402 (597)
                      +++....++......+...+.+.|++++|+..++...   +.+...+..+...+...|++++    |+..|++..+.. +
T Consensus       203 ~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P  281 (656)
T PRK15174        203 LLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN-S  281 (656)
T ss_pred             HHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-C
Confidence            6665433334444555667778888888888887765   4456677778888888888875    788888887652 2


Q ss_pred             CChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCCCHHH-HHHH
Q 007573          403 PDGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPS-SEHYTCLVDILSRAGQLEKAWQITQGMP-FEADTGV-WGSL  479 (597)
Q Consensus       403 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~-~~~l  479 (597)
                      .+...+..+...+...|++++|...++++.+.   .|+ ...+..+..+|.+.|++++|.+.++++. ..|+... +..+
T Consensus       282 ~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l---~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~  358 (656)
T PRK15174        282 DNVRIVTLYADALIRTGQNEKAIPLLQQSLAT---HPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYA  358 (656)
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHH
Confidence            34567778888888888999999888888753   343 5667778888888899999988888776 5565443 3445


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 007573          480 LAACVINLNVELGELAAKKMRELDPQN  506 (597)
Q Consensus       480 ~~~~~~~g~~~~a~~~~~~~~~~~p~~  506 (597)
                      ..++...|+.++|+..++++++..|++
T Consensus       359 a~al~~~G~~deA~~~l~~al~~~P~~  385 (656)
T PRK15174        359 AAALLQAGKTSEAESVFEHYIQARASH  385 (656)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhChhh
Confidence            667888899999999999999888886

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.86  E-value=8.9e-18  Score=180.36  Aligned_cols=394  Identities=8%  Similarity=0.007  Sum_probs=212.3

Q ss_pred             CcchHHHHHHHHHcCCChHHHHHHHccCCC---CChhhHHHHHHHHHcCCChHHHHHHHccCCC---CCchhHHHHHHHH
Q 007573          111 NIVSWNCMIAGCIDNDRIDDAFDYFQAMPE---RNTATYNAMISGFLKHGRLEEATRLFEQMPR---RNVISYTAMLDGF  184 (597)
Q Consensus       111 ~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~  184 (597)
                      +..-..-.+.+....|+.++|++++....+   .+...+..+...+.+.|++++|..+|++..+   .+...+..++..+
T Consensus        14 ~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l   93 (765)
T PRK10049         14 SNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTL   93 (765)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            333344444555566666666666666552   2333456666666666666666666666432   2344455566666


Q ss_pred             HhCCChhHHHHHHHhccc--C-CcchHHHHHHHHHcCCChHHHHHHHhhcCCCCCCc-hHHHHHHHHHHhcCCHHHHHHH
Q 007573          185 MKKGEVDKARALSDYMSF--K-NVVSWTVMITGYVKNERFCEARELFYRMPDYDKNV-FVVTAMITGFCKVGMLENARLL  260 (597)
Q Consensus       185 ~~~g~~~~A~~~~~~m~~--~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~  260 (597)
                      ...|++++|+..+++...  | +.. +..+..++...|+.++|+..++++.+..|+. ..+..+..++...|..++|+..
T Consensus        94 ~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~  172 (765)
T PRK10049         94 ADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGA  172 (765)
T ss_pred             HHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHH
Confidence            666666666666666522  2 233 5555556666666666666666666655533 2334455555556666666666


Q ss_pred             HhhcCCCChh--------HHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhccchh---HHHHHHHHH
Q 007573          261 FERIQPKDCV--------SFNAMIAGYAQNGVAEEALRLFSGMIKMDMQPDDATLVSVFTACSALQLL---NEGRQSHVL  329 (597)
Q Consensus       261 ~~~~~~~~~~--------~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~---~~a~~~~~~  329 (597)
                      ++.... ++.        ....++......+.                              ...+++   +.|...++.
T Consensus       173 l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~------------------------------~~~~r~~~ad~Al~~~~~  221 (765)
T PRK10049        173 IDDANL-TPAEKRDLEADAAAELVRLSFMPTR------------------------------SEKERYAIADRALAQYDA  221 (765)
T ss_pred             HHhCCC-CHHHHHHHHHHHHHHHHHhhccccc------------------------------ChhHHHHHHHHHHHHHHH
Confidence            655544 211        11111111111000                              011111   334444444


Q ss_pred             HHHh-CCCCccc-HH-H---HHHHHHHhcCCHHHHHHHHhccCCCC---hh-hHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 007573          330 VIRN-GFEANVS-VC-N---AVITMYSRCGGILDSELAFRQIHSPN---LV-SWNTIIAAFAQHGHYEKALIFFSQMGLN  399 (597)
Q Consensus       330 ~~~~-~~~~~~~-~~-~---~l~~~~~~~g~~~~A~~~~~~~~~~~---~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~  399 (597)
                      +.+. ...|+.. .+ .   ..+..+...|++++|+..|+.+...+   +. .-..+...|...|++++|+..|+++.+.
T Consensus       222 ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~  301 (765)
T PRK10049        222 LEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYH  301 (765)
T ss_pred             HHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhc
Confidence            4432 1111111 00 0   00122334466666666666665211   11 1112345666677777777777766543


Q ss_pred             CCCC---ChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcC----------CCCC---hHHHHHHHHHHhhcCCHHHHHHH
Q 007573          400 GFDP---DGITFLSLLSACGHAGKVNESMDLFELMVKVYG----------IIPS---SEHYTCLVDILSRAGQLEKAWQI  463 (597)
Q Consensus       400 g~~p---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~----------~~p~---~~~~~~l~~~~~~~g~~~~A~~~  463 (597)
                      ....   .......+..++...|++++|.++++.+.....          -.|+   ...+..++.++...|++++|+++
T Consensus       302 ~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~  381 (765)
T PRK10049        302 PETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMR  381 (765)
T ss_pred             CCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            2110   123344455566667777777777776654310          0122   12344566667777777777777


Q ss_pred             HhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHhC
Q 007573          464 TQGMP-FEA-DTGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRVRLLMKEQ  536 (597)
Q Consensus       464 ~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  536 (597)
                      ++++. ..| +...+..++..+...|++++|++.++++++++|+++..+..++..+...|++++|.++++.+.+.
T Consensus       382 l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~  456 (765)
T PRK10049        382 ARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR  456 (765)
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence            77655 333 45567777777777777777777777777777777777777777777777777777777777654

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.86  E-value=1.6e-17  Score=178.49  Aligned_cols=387  Identities=9%  Similarity=-0.010  Sum_probs=268.1

Q ss_pred             HHHHHHHHHhCCChhHHHHHHhhCCC-C--CcchHHHHHHHHHcCCChHHHHHHHccCC---CCChhhHHHHHHHHHcCC
Q 007573           84 WNAIITGYWQNGFLQESKNLFQSMPV-K--NIVSWNCMIAGCIDNDRIDDAFDYFQAMP---ERNTATYNAMISGFLKHG  157 (597)
Q Consensus        84 ~~~li~~~~~~g~~~~A~~~~~~~~~-~--~~~~~~~ll~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g  157 (597)
                      ..-.+......|+.++|++++.+... .  +...+..+..++.+.|++++|..++++..   +.++..+..++.++...|
T Consensus        18 ~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g   97 (765)
T PRK10049         18 IADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAG   97 (765)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Confidence            34455667789999999999999875 2  44568999999999999999999999965   556778888999999999


Q ss_pred             ChHHHHHHHccCCC--C-CchhHHHHHHHHHhCCChhHHHHHHHhccc--C-CcchHHHHHHHHHcCCChHHHHHHHhhc
Q 007573          158 RLEEATRLFEQMPR--R-NVISYTAMLDGFMKKGEVDKARALSDYMSF--K-NVVSWTVMITGYVKNERFCEARELFYRM  231 (597)
Q Consensus       158 ~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~  231 (597)
                      ++++|...+++..+  | +.. +..+...+...|+.++|+..++++..  | +...+..+..++...|..++|++.++.+
T Consensus        98 ~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~  176 (765)
T PRK10049         98 QYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDA  176 (765)
T ss_pred             CHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhC
Confidence            99999999998864  3 455 88889999999999999999999943  4 4456667788888899999999999988


Q ss_pred             CCCCCCch------HHHHHHHHHH-----hcCCH---HHHHHHHhhcCC---CChhH---H----HHHHHHHHHcCChhH
Q 007573          232 PDYDKNVF------VVTAMITGFC-----KVGML---ENARLLFERIQP---KDCVS---F----NAMIAGYAQNGVAEE  287 (597)
Q Consensus       232 ~~~~~~~~------~~~~l~~~~~-----~~g~~---~~A~~~~~~~~~---~~~~~---~----~~li~~~~~~g~~~~  287 (597)
                      .. .|+..      ....++....     ..+++   ++|+..++.+.+   .++..   +    ...+..+...|++++
T Consensus       177 ~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~e  255 (765)
T PRK10049        177 NL-TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKD  255 (765)
T ss_pred             CC-CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHH
Confidence            76 44420      1111122111     11122   445544444431   11110   0    011223344455555


Q ss_pred             HHHHHHHhHHCCCC-CCHHHHHHHHHHHhccchhHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHhccC
Q 007573          288 ALRLFSGMIKMDMQ-PDDATLVSVFTACSALQLLNEGRQSHVLVIRNGFEANVSVCNAVITMYSRCGGILDSELAFRQIH  366 (597)
Q Consensus       288 A~~~~~~m~~~g~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  366 (597)
                      |+..|+++.+.+.. |+..                                    ...+...|...|++++|+..|+++.
T Consensus       256 A~~~~~~ll~~~~~~P~~a------------------------------------~~~la~~yl~~g~~e~A~~~l~~~l  299 (765)
T PRK10049        256 VISEYQRLKAEGQIIPPWA------------------------------------QRWVASAYLKLHQPEKAQSILTELF  299 (765)
T ss_pred             HHHHHHHhhccCCCCCHHH------------------------------------HHHHHHHHHhcCCcHHHHHHHHHHh
Confidence            66555555554321 2211                                    1112445555555555555555543


Q ss_pred             C--CC-----hhhHHHHHHHHHHcCCHHHHHHHHHHHHHCC-----------CCCCh---HHHHHHHHHHhccCcHHHHH
Q 007573          367 S--PN-----LVSWNTIIAAFAQHGHYEKALIFFSQMGLNG-----------FDPDG---ITFLSLLSACGHAGKVNESM  425 (597)
Q Consensus       367 ~--~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-----------~~p~~---~~~~~ll~~~~~~g~~~~a~  425 (597)
                      .  |.     ......+..++...|++++|..+++++....           -.|+.   ..+..+...+...|++++|+
T Consensus       300 ~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~  379 (765)
T PRK10049        300 YHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAE  379 (765)
T ss_pred             hcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHH
Confidence            1  11     1234445556677777777777777776542           12332   24556667888899999999


Q ss_pred             HHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 007573          426 DLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMP-FEAD-TGVWGSLLAACVINLNVELGELAAKKMRELD  503 (597)
Q Consensus       426 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  503 (597)
                      ++++++...  .+.+...+..++.++...|++++|++.+++.. ..|+ ...+..++..+...|++++|+.+++++++..
T Consensus       380 ~~l~~al~~--~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~  457 (765)
T PRK10049        380 MRARELAYN--APGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVARE  457 (765)
T ss_pred             HHHHHHHHh--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence            999998763  34457888999999999999999999999876 5675 5577777788999999999999999999999


Q ss_pred             CCCCchH
Q 007573          504 PQNSAVY  510 (597)
Q Consensus       504 p~~~~~~  510 (597)
                      |+++.+.
T Consensus       458 Pd~~~~~  464 (765)
T PRK10049        458 PQDPGVQ  464 (765)
T ss_pred             CCCHHHH
Confidence            9987543

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.86  E-value=4.2e-18  Score=179.64  Aligned_cols=251  Identities=10%  Similarity=0.061  Sum_probs=181.5

Q ss_pred             cCCHHHHHHHHhhcCC------CChhHHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCC-HHHHHHHHHHHhccchhHHH
Q 007573          251 VGMLENARLLFERIQP------KDCVSFNAMIAGYAQNGVAEEALRLFSGMIKMDMQPD-DATLVSVFTACSALQLLNEG  323 (597)
Q Consensus       251 ~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a  323 (597)
                      .+++++|.+.|+....      .....|+.+...+...|++++|+..|++..+.  .|+ ...|..+...+...|++++|
T Consensus       307 ~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA  384 (615)
T TIGR00990       307 DESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL--DPRVTQSYIKRASMNLELGDPDKA  384 (615)
T ss_pred             hhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHCCCHHHH
Confidence            3556666666665542      13345666667777777777777777776654  343 33555666666677777777


Q ss_pred             HHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHhccC---CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 007573          324 RQSHVLVIRNGFEANVSVCNAVITMYSRCGGILDSELAFRQIH---SPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNG  400 (597)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g  400 (597)
                      ...++.+++.. +.+..++..+...+...|++++|...|++..   +.+...+..+...+.+.|++++|+..|++..+..
T Consensus       385 ~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~  463 (615)
T TIGR00990       385 EEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF  463 (615)
T ss_pred             HHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence            77777776654 4456777788888888889999888888776   4456677788888999999999999999988642


Q ss_pred             CCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hH-------HHHHHHHHHhhcCCHHHHHHHHhhCC-CCC
Q 007573          401 FDPDGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPS-SE-------HYTCLVDILSRAGQLEKAWQITQGMP-FEA  471 (597)
Q Consensus       401 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~-------~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p  471 (597)
                       +.+...+..+...+...|++++|.+.|+...+.   .|+ ..       .++.....+...|++++|.+++++.. ..|
T Consensus       464 -P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l---~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p  539 (615)
T TIGR00990       464 -PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL---EKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDP  539 (615)
T ss_pred             -CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc---CCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCC
Confidence             334677888888999999999999999988753   232 11       12222233445699999999998854 556


Q ss_pred             C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 007573          472 D-TGVWGSLLAACVINLNVELGELAAKKMRELDPQNSA  508 (597)
Q Consensus       472 ~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~  508 (597)
                      + ...+..++..+...|++++|+..++++.++.+....
T Consensus       540 ~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~e  577 (615)
T TIGR00990       540 ECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEGE  577 (615)
T ss_pred             CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHHH
Confidence            5 457888999999999999999999999998776433

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.86  E-value=1.2e-18  Score=174.71  Aligned_cols=289  Identities=11%  Similarity=0.072  Sum_probs=225.5

Q ss_pred             HHHHHHhCCChhHHHHHHHhcccC---CcchHHHHHHHHHcCCChHHHHHHHhhcCCCCCC-----chHHHHHHHHHHhc
Q 007573          180 MLDGFMKKGEVDKARALSDYMSFK---NVVSWTVMITGYVKNERFCEARELFYRMPDYDKN-----VFVVTAMITGFCKV  251 (597)
Q Consensus       180 li~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-----~~~~~~l~~~~~~~  251 (597)
                      ....+...|++++|+..|.++...   +..++..+...+...|++++|..+++.+....+.     ..++..++..|.+.
T Consensus        41 ~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~  120 (389)
T PRK11788         41 KGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA  120 (389)
T ss_pred             HHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence            345567889999999999999543   4457888999999999999999999998874321     24578889999999


Q ss_pred             CCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhccchhHHHHHHHH
Q 007573          252 GMLENARLLFERIQP---KDCVSFNAMIAGYAQNGVAEEALRLFSGMIKMDMQPDDATLVSVFTACSALQLLNEGRQSHV  328 (597)
Q Consensus       252 g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~  328 (597)
                      |++++|..+|+++.+   .+..+++.++..+.+.|++++|++.++.+.+.+..+.....                     
T Consensus       121 g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~---------------------  179 (389)
T PRK11788        121 GLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEI---------------------  179 (389)
T ss_pred             CCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHH---------------------
Confidence            999999999999865   46678999999999999999999999999886533322110                     


Q ss_pred             HHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHhccC---CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCh
Q 007573          329 LVIRNGFEANVSVCNAVITMYSRCGGILDSELAFRQIH---SPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDG  405 (597)
Q Consensus       329 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~  405 (597)
                                ...+..+...+.+.|++++|...|+++.   +.+...+..+...+.+.|++++|.++++++.+.+.....
T Consensus       180 ----------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~  249 (389)
T PRK11788        180 ----------AHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLS  249 (389)
T ss_pred             ----------HHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHH
Confidence                      0112334555666667777776666654   234556777888889999999999999998875322224


Q ss_pred             HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCCCHHHHHHHHHHHH
Q 007573          406 ITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMP-FEADTGVWGSLLAACV  484 (597)
Q Consensus       406 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~~~~~  484 (597)
                      .++..+..++...|++++|.+.++.+.+.   .|+...+..++..+.+.|++++|.++++++. ..|+...+..++..+.
T Consensus       250 ~~~~~l~~~~~~~g~~~~A~~~l~~~~~~---~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~  326 (389)
T PRK11788        250 EVLPKLMECYQALGDEAEGLEFLRRALEE---YPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHL  326 (389)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhh
Confidence            56788889999999999999999998764   4676677889999999999999999998765 6788888888887766


Q ss_pred             h---cCCHHHHHHHHHHHHhc
Q 007573          485 I---NLNVELGELAAKKMREL  502 (597)
Q Consensus       485 ~---~g~~~~a~~~~~~~~~~  502 (597)
                      .   .|+.+++...++++++.
T Consensus       327 ~~~~~g~~~~a~~~~~~~~~~  347 (389)
T PRK11788        327 AEAEEGRAKESLLLLRDLVGE  347 (389)
T ss_pred             hccCCccchhHHHHHHHHHHH
Confidence            4   55888999988888863

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.85  E-value=1e-17  Score=175.94  Aligned_cols=346  Identities=10%  Similarity=-0.046  Sum_probs=277.5

Q ss_pred             HhCCChhHHHHHHHhccc------CCcchHHHHHHHHHcCCChHHHHHHHhhcCCCCCC-chHHHHHHHHHHhcCCHHHH
Q 007573          185 MKKGEVDKARALSDYMSF------KNVVSWTVMITGYVKNERFCEARELFYRMPDYDKN-VFVVTAMITGFCKVGMLENA  257 (597)
Q Consensus       185 ~~~g~~~~A~~~~~~m~~------~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A  257 (597)
                      .++.+++.-.-+|....+      .+......++..+.+.|++++|+.+++......|+ ......++.+....|++++|
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A   95 (656)
T PRK15174         16 LKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAV   95 (656)
T ss_pred             hhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHH
Confidence            455566655555544421      13345566778889999999999999999886664 44666777778889999999


Q ss_pred             HHHHhhcCC---CChhHHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCC-HHHHHHHHHHHhccchhHHHHHHHHHHHHh
Q 007573          258 RLLFERIQP---KDCVSFNAMIAGYAQNGVAEEALRLFSGMIKMDMQPD-DATLVSVFTACSALQLLNEGRQSHVLVIRN  333 (597)
Q Consensus       258 ~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~  333 (597)
                      ...++++..   .+...|..+...+...|++++|+..++++.+.  .|+ ...+..+...+...|+.++|...+..+...
T Consensus        96 ~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l--~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~  173 (656)
T PRK15174         96 LQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLA--FSGNSQIFALHLRTLVLMDKELQAISLARTQAQE  173 (656)
T ss_pred             HHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh
Confidence            999999754   46678999999999999999999999999875  454 556777888899999999999999988776


Q ss_pred             CCCCcccHHHHHHHHHHhcCCHHHHHHHHhccCCC----ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHH
Q 007573          334 GFEANVSVCNAVITMYSRCGGILDSELAFRQIHSP----NLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFL  409 (597)
Q Consensus       334 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~  409 (597)
                      ... +...+..+ ..+...|++++|...++.+.+.    +...+..+...+...|++++|+..++++.+.. +.+...+.
T Consensus       174 ~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~  250 (656)
T PRK15174        174 VPP-RGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRR  250 (656)
T ss_pred             CCC-CHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHH
Confidence            533 33344333 3478899999999999987632    23344555678889999999999999999764 34466778


Q ss_pred             HHHHHHhccCcHHH----HHHHHHHhHHhcCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCCC-HHHHHHHHHH
Q 007573          410 SLLSACGHAGKVNE----SMDLFELMVKVYGIIP-SSEHYTCLVDILSRAGQLEKAWQITQGMP-FEAD-TGVWGSLLAA  482 (597)
Q Consensus       410 ~ll~~~~~~g~~~~----a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~  482 (597)
                      .+...+...|++++    |...|+.+.+.   .| +...+..+..++.+.|++++|...+++.. ..|+ ...+..+..+
T Consensus       251 ~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l---~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~  327 (656)
T PRK15174        251 SLGLAYYQSGRSREAKLQAAEHWRHALQF---NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARA  327 (656)
T ss_pred             HHHHHHHHcCCchhhHHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            88899999999986    89999988753   44 47789999999999999999999999876 5564 5577888899


Q ss_pred             HHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHhCCC
Q 007573          483 CVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRVRLLMKEQGV  538 (597)
Q Consensus       483 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  538 (597)
                      +...|++++|+..++++++.+|.++..+..++.++...|++++|.+.+++..+...
T Consensus       328 l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P  383 (656)
T PRK15174        328 LRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARA  383 (656)
T ss_pred             HHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCh
Confidence            99999999999999999999999887777789999999999999999999887654

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.84  E-value=3.4e-17  Score=164.65  Aligned_cols=473  Identities=13%  Similarity=0.116  Sum_probs=268.3

Q ss_pred             hcCChHHHHHHHhhcCC--CCcc--hHHHHHHHHHhCCChhHHHHHHhhCCCCCcchHHHHHHHHH------cCCChHHH
Q 007573           62 RAGKISAARQLFDQMTT--KDVI--TWNAIITGYWQNGFLQESKNLFQSMPVKNIVSWNCMIAGCI------DNDRIDDA  131 (597)
Q Consensus        62 ~~g~~~~A~~~~~~~~~--~~~~--~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~------~~~~~~~A  131 (597)
                      ..|++..|..+|.....  |...  ..-.+..++++.|+.+.|+..|.+..+.|+....+++....      ....+..+
T Consensus       176 nkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~  255 (1018)
T KOG2002|consen  176 NKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKG  255 (1018)
T ss_pred             ccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHH
Confidence            45778888888877533  2111  12223355567777777777777777655544443333211      12234445


Q ss_pred             HHHHccCC---CCChhhHHHHHHHHHcCCChHHHHHHHccCCCCC------chhHHHHHHHHHhCCChhHHHHHHHhccc
Q 007573          132 FDYFQAMP---ERNTATYNAMISGFLKHGRLEEATRLFEQMPRRN------VISYTAMLDGFMKKGEVDKARALSDYMSF  202 (597)
Q Consensus       132 ~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~  202 (597)
                      ..++...-   ..||.+.+.|.+.|.-.|+++.+..+...+...+      ..+|-.+.++|-..|++++|...|-+...
T Consensus       256 ~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k  335 (1018)
T KOG2002|consen  256 VQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLK  335 (1018)
T ss_pred             HHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHc
Confidence            55554443   4466666666666666677776666666554321      22455666666677777777666665533


Q ss_pred             C--Cc--chHHHHHHHHHcCCChHHHHHHHhhcCCCCCC-chHHHHHHHHHHhcC----CHHHHHHHHhhcCCC---Chh
Q 007573          203 K--NV--VSWTVMITGYVKNERFCEARELFYRMPDYDKN-VFVVTAMITGFCKVG----MLENARLLFERIQPK---DCV  270 (597)
Q Consensus       203 ~--~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~l~~~~~~~g----~~~~A~~~~~~~~~~---~~~  270 (597)
                      .  |.  ..+.-+...+...|+++.+...|+.+.+..|+ ..+...|...|...+    ..+.|..++.+..++   |..
T Consensus       336 ~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~  415 (1018)
T KOG2002|consen  336 ADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSE  415 (1018)
T ss_pred             cCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHH
Confidence            2  22  23344556666666666666666666654443 334444445554443    334444444443332   333


Q ss_pred             HH--------------------------------------HHHHHHHHHcCChhHHHHHHHHhHHC---CCCCCHH----
Q 007573          271 SF--------------------------------------NAMIAGYAQNGVAEEALRLFSGMIKM---DMQPDDA----  305 (597)
Q Consensus       271 ~~--------------------------------------~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~~----  305 (597)
                      .|                                      |.+.......|.+++|...|......   ...+|..    
T Consensus       416 a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~  495 (1018)
T KOG2002|consen  416 AWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTN  495 (1018)
T ss_pred             HHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccch
Confidence            34                                      44444444444444444444444332   1122221    


Q ss_pred             -HHH-HHHHHHhccchhHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHhccC---CCChhhHHHHHHHH
Q 007573          306 -TLV-SVFTACSALQLLNEGRQSHVLVIRNGFEANVSVCNAVITMYSRCGGILDSELAFRQIH---SPNLVSWNTIIAAF  380 (597)
Q Consensus       306 -~~~-~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~  380 (597)
                       |.. .+....-..++.+.|.+.+..+++.. +.-+..|-.+..+....+...+|...++.+.   ..++..|+.+...+
T Consensus       496 lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh-p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~  574 (1018)
T KOG2002|consen  496 LTLKYNLARLLEELHDTEVAEEMYKSILKEH-PGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLH  574 (1018)
T ss_pred             hHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC-chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHH
Confidence             111 11122223344444444444444432 1111122222222222234445555555444   34555666666666


Q ss_pred             HHcCCHHHHHHHHHHHHHCC-CCCChHHHHHHHHHHhc------------cCcHHHHHHHHHHhHHhcCCCCChHHHHHH
Q 007573          381 AQHGHYEKALIFFSQMGLNG-FDPDGITFLSLLSACGH------------AGKVNESMDLFELMVKVYGIIPSSEHYTCL  447 (597)
Q Consensus       381 ~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~ll~~~~~------------~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l  447 (597)
                      .....+..|.+-|....+.- ..+|..+...|.+.|..            .+..+.|.++|.++.+  .-+-+...-+.+
T Consensus       575 l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~--~dpkN~yAANGI  652 (1018)
T KOG2002|consen  575 LKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLR--NDPKNMYAANGI  652 (1018)
T ss_pred             HhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHh--cCcchhhhccch
Confidence            66666666666555544321 23566666666665532            2345677777777765  334456667778


Q ss_pred             HHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-CCC-CCchHHHHHHHHHhcCCc
Q 007573          448 VDILSRAGQLEKAWQITQGMP--FEADTGVWGSLLAACVINLNVELGELAAKKMREL-DPQ-NSAVYVMLSNLYAAAGMW  523 (597)
Q Consensus       448 ~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~p~-~~~~~~~l~~~~~~~g~~  523 (597)
                      .-.++..|++.+|..+|.+..  ......+|..+..+|...|++-.|+++|+..++. .+. ++.+...|+.++.+.|.+
T Consensus       653 giVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~  732 (1018)
T KOG2002|consen  653 GIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKL  732 (1018)
T ss_pred             hhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhH
Confidence            888899999999999998876  2335678889999999999999999999998864 344 478888999999999999


Q ss_pred             HHHHHHHHHHHhCC
Q 007573          524 RDVTRVRLLMKEQG  537 (597)
Q Consensus       524 ~~A~~~~~~~~~~~  537 (597)
                      .+|.+.........
T Consensus       733 ~eak~~ll~a~~~~  746 (1018)
T KOG2002|consen  733 QEAKEALLKARHLA  746 (1018)
T ss_pred             HHHHHHHHHHHHhC
Confidence            99999887776544

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.83  E-value=2.7e-16  Score=165.57  Aligned_cols=418  Identities=10%  Similarity=0.017  Sum_probs=299.7

Q ss_pred             HHHhCCChhHHHHHHhhCCCCCcc---hHHHHHHHHHcCCChHHHHHHHccCCCCChh-hHHHH--HHHHHcCCChHHHH
Q 007573           90 GYWQNGFLQESKNLFQSMPVKNIV---SWNCMIAGCIDNDRIDDAFDYFQAMPERNTA-TYNAM--ISGFLKHGRLEEAT  163 (597)
Q Consensus        90 ~~~~~g~~~~A~~~~~~~~~~~~~---~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~l--~~~~~~~g~~~~A~  163 (597)
                      ...+.|+++.|+..|++..+.++.   ....++..+...|+.++|...+++...|+.. .+..+  ...|...|++++|+
T Consensus        43 i~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Ai  122 (822)
T PRK14574         43 IRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQAL  122 (822)
T ss_pred             HHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence            356899999999999999865333   2448888888999999999999999866443 33333  56888889999999


Q ss_pred             HHHccCCC---CCchhHHHHHHHHHhCCChhHHHHHHHhcccCCc--chHHHHHHHHHcCCChHHHHHHHhhcCCCCCC-
Q 007573          164 RLFEQMPR---RNVISYTAMLDGFMKKGEVDKARALSDYMSFKNV--VSWTVMITGYVKNERFCEARELFYRMPDYDKN-  237 (597)
Q Consensus       164 ~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-  237 (597)
                      ++|+++.+   .++..+..++..+...++.++|++.++++.+.+.  ..+..++..+...++..+|++.++++.+..|+ 
T Consensus       123 ely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~P~n  202 (822)
T PRK14574        123 ALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVRLAPTS  202 (822)
T ss_pred             HHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhCCCC
Confidence            99999975   2456677888999999999999999999966544  34433333444466666699999999998774 


Q ss_pred             chHHHHHHHHHHhcCCHHHHHHHHhhcCCC-ChhHHHH----HHHHHHHcC---------C---hhHHHHHHHHhHHC-C
Q 007573          238 VFVVTAMITGFCKVGMLENARLLFERIQPK-DCVSFNA----MIAGYAQNG---------V---AEEALRLFSGMIKM-D  299 (597)
Q Consensus       238 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~----li~~~~~~g---------~---~~~A~~~~~~m~~~-g  299 (597)
                      ...+..+...+.+.|-...|.++..+-+.- +...+..    .+.-..+.+         +   .+.|+.-++.+... +
T Consensus       203 ~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~  282 (822)
T PRK14574        203 EEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWG  282 (822)
T ss_pred             HHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhcc
Confidence            567788889999999999999988876531 1111111    111122111         2   34455556665542 2


Q ss_pred             CCCCH-HH----HHHHHHHHhccchhHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHhccCCC------
Q 007573          300 MQPDD-AT----LVSVFTACSALQLLNEGRQSHVLVIRNGFEANVSVCNAVITMYSRCGGILDSELAFRQIHSP------  368 (597)
Q Consensus       300 ~~p~~-~~----~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------  368 (597)
                      -.|.. ..    ..--+-++...++..++...++.+...+.+....+-.++.++|...+++++|+.+++.+...      
T Consensus       283 ~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~  362 (822)
T PRK14574        283 KDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFR  362 (822)
T ss_pred             CCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccC
Confidence            22322 22    22345566778888888888888888887666678888888888888899988888877421      


Q ss_pred             ---ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-----------CCC--h-HHHHHHHHHHhccCcHHHHHHHHHHh
Q 007573          369 ---NLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGF-----------DPD--G-ITFLSLLSACGHAGKVNESMDLFELM  431 (597)
Q Consensus       369 ---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-----------~p~--~-~~~~~ll~~~~~~g~~~~a~~~~~~~  431 (597)
                         +......|.-+|...+++++|..+++++.+...           .||  - ..+..++..+...|++.+|++.++.+
T Consensus       363 ~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l  442 (822)
T PRK14574        363 NSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDL  442 (822)
T ss_pred             CCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence               223346677888888888888888888886311           122  2 23344556677888888888888888


Q ss_pred             HHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch
Q 007573          432 VKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMP-FEAD-TGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAV  509 (597)
Q Consensus       432 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~  509 (597)
                      ..  .-+-|......+.+++...|++.+|++.++... ..|+ ..+....+.+....+++++|..+.+.+.+..|+++.+
T Consensus       443 ~~--~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~~  520 (822)
T PRK14574        443 SS--TAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRSPEDIPS  520 (822)
T ss_pred             HH--hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchhH
Confidence            65  334467788888888888888888888887765 4554 4566777777888888888888888888888888643

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.83  E-value=2e-17  Score=166.37  Aligned_cols=433  Identities=15%  Similarity=0.123  Sum_probs=295.7

Q ss_pred             CcchHHHHHHHHHhCCChhHHHHHHhhCCCC------CcchHHHHHHHHHcCCChHHHHHHHccCCC--CC--hhhHHHH
Q 007573           80 DVITWNAIITGYWQNGFLQESKNLFQSMPVK------NIVSWNCMIAGCIDNDRIDDAFDYFQAMPE--RN--TATYNAM  149 (597)
Q Consensus        80 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~--~~--~~~~~~l  149 (597)
                      |+...+.|.+-|...|++..+..+.+.+...      -..+|..+.+++...|++++|..+|.+...  ++  ...+--|
T Consensus       269 nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~Gl  348 (1018)
T KOG2002|consen  269 NPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGL  348 (1018)
T ss_pred             CcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccch
Confidence            3444445555555556666666655555432      123455666666666777777666666552  22  2234445


Q ss_pred             HHHHHcCCChHHHHHHHccCCC---CCchhHHHHHHHHHhCC----ChhHHHHHHHhcccC---CcchHHHHHHHHHcCC
Q 007573          150 ISGFLKHGRLEEATRLFEQMPR---RNVISYTAMLDGFMKKG----EVDKARALSDYMSFK---NVVSWTVMITGYVKNE  219 (597)
Q Consensus       150 ~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g----~~~~A~~~~~~m~~~---~~~~~~~ll~~~~~~g  219 (597)
                      .++|.+.|+++.+...|+.+..   .+..+.-.|...|...+    ..+.|..++.+...+   |...|..+...+....
T Consensus       349 gQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d  428 (1018)
T KOG2002|consen  349 GQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTD  428 (1018)
T ss_pred             hHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcC
Confidence            6666677777777766666643   23344444555555443    345555555555333   4456666666554433


Q ss_pred             ChHHHHHHHhhcCC------CCCCchHHHHHHHHHHhcCCHHHHHHHHhhcCCC-------Ch------hHHHHHHHHHH
Q 007573          220 RFCEARELFYRMPD------YDKNVFVVTAMITGFCKVGMLENARLLFERIQPK-------DC------VSFNAMIAGYA  280 (597)
Q Consensus       220 ~~~~a~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~------~~~~~li~~~~  280 (597)
                      - ..++..|..+..      ..+.....|.+...+...|++++|...|++....       |.      .+-..+...+-
T Consensus       429 ~-~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E  507 (1018)
T KOG2002|consen  429 P-WASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLE  507 (1018)
T ss_pred             h-HHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHH
Confidence            3 333555554432      2256678889999999999999999999876432       22      12334666777


Q ss_pred             HcCChhHHHHHHHHhHHCCCCCCHHH-HHHHHHHHhccchhHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHH
Q 007573          281 QNGVAEEALRLFSGMIKMDMQPDDAT-LVSVFTACSALQLLNEGRQSHVLVIRNGFEANVSVCNAVITMYSRCGGILDSE  359 (597)
Q Consensus       281 ~~g~~~~A~~~~~~m~~~g~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~  359 (597)
                      ..++++.|.+.|..+.+.  .|.-+. |.-+....-..+...+|...+..+...+ ..++.++..+...|.+...+..|.
T Consensus       508 ~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~  584 (1018)
T KOG2002|consen  508 ELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAK  584 (1018)
T ss_pred             hhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccc
Confidence            788999999999999885  455443 3333322234467778888888887665 667778888888999999998888


Q ss_pred             HHHhccC-----CCChhhHHHHHHHHHH------------cCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHH
Q 007573          360 LAFRQIH-----SPNLVSWNTIIAAFAQ------------HGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVN  422 (597)
Q Consensus       360 ~~~~~~~-----~~~~~~~~~li~~~~~------------~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~  422 (597)
                      +-|+.+.     .+|..+.-+|...|.+            .+..++|+++|.+..+.. +-|...-+.+.-.++..|++.
T Consensus       585 k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~  663 (1018)
T KOG2002|consen  585 KKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFS  663 (1018)
T ss_pred             cHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCch
Confidence            8665554     3455555555554442            345688999999988753 556778888888999999999


Q ss_pred             HHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 007573          423 ESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMP----FEADTGVWGSLLAACVINLNVELGELAAKK  498 (597)
Q Consensus       423 ~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~  498 (597)
                      +|..+|.+.++.  ..-...+|-.+...|..+|++..|.++|+...    .+.+..+...|..++...|.+.+|.+.+..
T Consensus       664 ~A~dIFsqVrEa--~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~  741 (1018)
T KOG2002|consen  664 EARDIFSQVREA--TSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLK  741 (1018)
T ss_pred             HHHHHHHHHHHH--HhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            999999999875  23345678899999999999999999998764    345788999999999999999999999999


Q ss_pred             HHhcCCCCCchHHHHHHHHHh
Q 007573          499 MRELDPQNSAVYVMLSNLYAA  519 (597)
Q Consensus       499 ~~~~~p~~~~~~~~l~~~~~~  519 (597)
                      ++...|.++.....++-+..+
T Consensus       742 a~~~~p~~~~v~FN~a~v~kk  762 (1018)
T KOG2002|consen  742 ARHLAPSNTSVKFNLALVLKK  762 (1018)
T ss_pred             HHHhCCccchHHhHHHHHHHH
Confidence            999999999887777766543

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.83  E-value=2.1e-16  Score=166.42  Aligned_cols=416  Identities=10%  Similarity=-0.001  Sum_probs=295.7

Q ss_pred             HHHhcCChHHHHHHHhhcCC--CCcc-hHHHHHHHHHhCCChhHHHHHHhhCCCC-CcchHHHH--HHHHHcCCChHHHH
Q 007573           59 ALSRAGKISAARQLFDQMTT--KDVI-TWNAIITGYWQNGFLQESKNLFQSMPVK-NIVSWNCM--IAGCIDNDRIDDAF  132 (597)
Q Consensus        59 ~~~~~g~~~~A~~~~~~~~~--~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~l--l~~~~~~~~~~~A~  132 (597)
                      ...+.|+++.|+..|++..+  |+.. ....++..+...|+.++|+..+++...+ +...+..+  ...+...|++++|.
T Consensus        43 i~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Ai  122 (822)
T PRK14574         43 IRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQAL  122 (822)
T ss_pred             HHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence            45689999999999999887  4321 2337888888889999999999999876 44444444  45777889999999


Q ss_pred             HHHccCC---CCChhhHHHHHHHHHcCCChHHHHHHHccCCCCCch--hHHHHHHHHHhCCChhHHHHHHHhcc--cC-C
Q 007573          133 DYFQAMP---ERNTATYNAMISGFLKHGRLEEATRLFEQMPRRNVI--SYTAMLDGFMKKGEVDKARALSDYMS--FK-N  204 (597)
Q Consensus       133 ~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~m~--~~-~  204 (597)
                      ++++.+.   +.++..+..++..+...++.++|++.++++...++.  .+..++..+...++..+|++.++++.  .| +
T Consensus       123 ely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~P~n  202 (822)
T PRK14574        123 ALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVRLAPTS  202 (822)
T ss_pred             HHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhCCCC
Confidence            9999988   445677778888899999999999999988764443  34333333333566656999999884  34 4


Q ss_pred             cchHHHHHHHHHcCCChHHHHHHHhhcCC-CCCCchHH--HHHHHHHH---------hcCC---HHHHHHHHhhcCC---
Q 007573          205 VVSWTVMITGYVKNERFCEARELFYRMPD-YDKNVFVV--TAMITGFC---------KVGM---LENARLLFERIQP---  266 (597)
Q Consensus       205 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~--~~l~~~~~---------~~g~---~~~A~~~~~~~~~---  266 (597)
                      ...+..+..++.+.|-...|.++...-.+ +.+....+  ...+.-..         ...+   .+.|+.-++.+..   
T Consensus       203 ~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~  282 (822)
T PRK14574        203 EEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWG  282 (822)
T ss_pred             HHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhcc
Confidence            56678888889999999999988887654 22211111  11111111         1122   2344444444332   


Q ss_pred             CCh---h----HHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhccchhHHHHHHHHHHHHhCC----
Q 007573          267 KDC---V----SFNAMIAGYAQNGVAEEALRLFSGMIKMDMQPDDATLVSVFTACSALQLLNEGRQSHVLVIRNGF----  335 (597)
Q Consensus       267 ~~~---~----~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~----  335 (597)
                      +++   .    ..--.+-++...|++.++++.|+.+...|.+....+-..+..+|...+.+++|..++..+.....    
T Consensus       283 ~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~  362 (822)
T PRK14574        283 KDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFR  362 (822)
T ss_pred             CCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccC
Confidence            212   1    22244567788899999999999999888765666788889999999999999999998876531    


Q ss_pred             -CCcccHHHHHHHHHHhcCCHHHHHHHHhccCC--C-------------Ch---hhHHHHHHHHHHcCCHHHHHHHHHHH
Q 007573          336 -EANVSVCNAVITMYSRCGGILDSELAFRQIHS--P-------------NL---VSWNTIIAAFAQHGHYEKALIFFSQM  396 (597)
Q Consensus       336 -~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-------------~~---~~~~~li~~~~~~g~~~~A~~~~~~m  396 (597)
                       +++......|..+|...+++++|..+++.+..  |             |.   ..+..++..+...|+..+|.+.++++
T Consensus       363 ~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l  442 (822)
T PRK14574        363 NSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDL  442 (822)
T ss_pred             CCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence             22344457888999999999999999988762  2             11   13344567788899999999999999


Q ss_pred             HHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCCCHH
Q 007573          397 GLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPS-SEHYTCLVDILSRAGQLEKAWQITQGMP-FEADTG  474 (597)
Q Consensus       397 ~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~  474 (597)
                      .... +-|......+...+...|.+.+|.+.++.+.   .+.|+ ..+....+..+...|++++|.++.+.+. ..|+..
T Consensus       443 ~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~---~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~  518 (822)
T PRK14574        443 SSTA-PANQNLRIALASIYLARDLPRKAEQELKAVE---SLAPRSLILERAQAETAMALQEWHQMELLTDDVISRSPEDI  518 (822)
T ss_pred             HHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh---hhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCch
Confidence            7653 5567788888888999999999999997665   44555 6677778888888999999988887665 445544


Q ss_pred             HHHH
Q 007573          475 VWGS  478 (597)
Q Consensus       475 ~~~~  478 (597)
                      ....
T Consensus       519 ~~~~  522 (822)
T PRK14574        519 PSQE  522 (822)
T ss_pred             hHHH
Confidence            3333

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.73  E-value=2.4e-15  Score=138.85  Aligned_cols=273  Identities=14%  Similarity=0.096  Sum_probs=208.0

Q ss_pred             HHHHhcCCHHHHHHHHhhcCCCChhHHH----HHHHH-HHH-cCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhccch
Q 007573          246 TGFCKVGMLENARLLFERIQPKDCVSFN----AMIAG-YAQ-NGVAEEALRLFSGMIKMDMQPDDATLVSVFTACSALQL  319 (597)
Q Consensus       246 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~li~~-~~~-~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~  319 (597)
                      .-|.+.|+++.|.++++-+.++|..+-.    .|-.. |.+ ..++..|.+.-+...... .-+....+.--+.....|+
T Consensus       427 ~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd  505 (840)
T KOG2003|consen  427 GELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGD  505 (840)
T ss_pred             HHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCc
Confidence            3577899999999999888776554322    22222 222 334666666555544322 2233333333333456799


Q ss_pred             hHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHhccC---CCChhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 007573          320 LNEGRQSHVLVIRNGFEANVSVCNAVITMYSRCGGILDSELAFRQIH---SPNLVSWNTIIAAFAQHGHYEKALIFFSQM  396 (597)
Q Consensus       320 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m  396 (597)
                      +++|...+.+.+...-......|| +.-.+-..|++++|+..|-++.   ..+..+...+...|-...+..+|++++-+.
T Consensus       506 ~dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~  584 (840)
T KOG2003|consen  506 LDKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQA  584 (840)
T ss_pred             HHHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHh
Confidence            999999999998776444444454 3445678899999999998876   567778888889999999999999999777


Q ss_pred             HHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCCCHHH
Q 007573          397 GLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMP-FEADTGV  475 (597)
Q Consensus       397 ~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~  475 (597)
                      ... ++.|+.....+...|-+.|+-.+|.+.+-.--+  -++.+.++..-|..-|....-+++|+.+|++.. ++|+..-
T Consensus       585 ~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~k  661 (840)
T KOG2003|consen  585 NSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSK  661 (840)
T ss_pred             ccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHH
Confidence            543 455688889999999999999999988765433  455678898899999999999999999999876 8999999


Q ss_pred             HHHHHHHH-HhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCc
Q 007573          476 WGSLLAAC-VINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGMW  523 (597)
Q Consensus       476 ~~~l~~~~-~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~  523 (597)
                      |..++..| .+.|++.+|..+|+...+.-|.+...+..|...+...|..
T Consensus       662 wqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl~  710 (840)
T KOG2003|consen  662 WQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGLK  710 (840)
T ss_pred             HHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccch
Confidence            99988775 5789999999999999999999999999999988887753

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.72  E-value=2.4e-13  Score=126.60  Aligned_cols=485  Identities=14%  Similarity=0.101  Sum_probs=359.1

Q ss_pred             CCcchHHHHHHHHHhcCChHHHHHHHhhcCC---CCcchHHHHHHHHHhCCChhHHHHHHhhCCCC---CcchHHHHHHH
Q 007573           48 QYVFVNNAKISALSRAGKISAARQLFDQMTT---KDVITWNAIITGYWQNGFLQESKNLFQSMPVK---NIVSWNCMIAG  121 (597)
Q Consensus        48 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~  121 (597)
                      -+...|-...+.=...+++..|+.+|++...   .+...|-..+..-.++..+..|..++++....   -...|...+-.
T Consensus        71 ~~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ym  150 (677)
T KOG1915|consen   71 LNMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYM  150 (677)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence            3444555555555567889999999999876   67778888999999999999999999998642   23456666666


Q ss_pred             HHcCCChHHHHHHHccCC--CCChhhHHHHHHHHHcCCChHHHHHHHccCC--CCCchhHHHHHHHHHhCCChhHHHHHH
Q 007573          122 CIDNDRIDDAFDYFQAMP--ERNTATYNAMISGFLKHGRLEEATRLFEQMP--RRNVISYTAMLDGFMKKGEVDKARALS  197 (597)
Q Consensus       122 ~~~~~~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~  197 (597)
                      --..|++..|.++|++..  +|+...|++.|+.-.+...++.|..++++..  .|++.+|.-..+.-.++|....|..+|
T Consensus       151 EE~LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~Vy  230 (677)
T KOG1915|consen  151 EEMLGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVY  230 (677)
T ss_pred             HHHhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHH
Confidence            667899999999999987  8999999999999999999999999999865  699999999999999999999999999


Q ss_pred             HhcccC--C----cchHHHHHHHHHcCCChHHHHHHHhhcCCCCCCc---hHHHHHHHHHHhcCCH---HHHHHH-----
Q 007573          198 DYMSFK--N----VVSWTVMITGYVKNERFCEARELFYRMPDYDKNV---FVVTAMITGFCKVGML---ENARLL-----  260 (597)
Q Consensus       198 ~~m~~~--~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~---~~A~~~-----  260 (597)
                      ...+..  |    ...+.+...--..+..++.|.-+|.-+++.-|..   ..|..+...=-+-|+.   ++++--     
T Consensus       231 erAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~q  310 (677)
T KOG1915|consen  231 ERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQ  310 (677)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhH
Confidence            888432  2    2344445555556778889999999888744543   3444444443444553   444322     


Q ss_pred             HhhcCCC---ChhHHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCH-------HHHHHHHHHH---hccchhHHHHHHH
Q 007573          261 FERIQPK---DCVSFNAMIAGYAQNGVAEEALRLFSGMIKMDMQPDD-------ATLVSVFTAC---SALQLLNEGRQSH  327 (597)
Q Consensus       261 ~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-------~~~~~ll~~~---~~~~~~~~a~~~~  327 (597)
                      ++.....   |-.+|--.++.-...|+.+...++|++.... ++|-.       ..|..+=-+|   ....+.+.+.+++
T Consensus       311 YE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vy  389 (677)
T KOG1915|consen  311 YEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVY  389 (677)
T ss_pred             HHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence            2222232   5568888888888899999999999998864 45522       1232222222   2567899999999


Q ss_pred             HHHHHhCCCCcccHHHHHHHHH----HhcCCHHHHHHHHhccC--CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 007573          328 VLVIRNGFEANVSVCNAVITMY----SRCGGILDSELAFRQIH--SPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGF  401 (597)
Q Consensus       328 ~~~~~~~~~~~~~~~~~l~~~~----~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~  401 (597)
                      +..++ -+|....++..+=-+|    .++.++..|.+++....  .|...++...|..-.+.+++|.+..++++.++-+ 
T Consensus       390 q~~l~-lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-  467 (677)
T KOG1915|consen  390 QACLD-LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-  467 (677)
T ss_pred             HHHHh-hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-
Confidence            99988 4566777776655555    46789999999998876  6788889999999999999999999999999865 


Q ss_pred             CCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCCCHHHHHHHH
Q 007573          402 DPDGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMP-FEADTGVWGSLL  480 (597)
Q Consensus       402 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~  480 (597)
                      +-|..+|......-...|+.+.|..+|+.++....+......|.+.|+--...|.++.|..+++++. ..+...+|.++.
T Consensus       468 Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~kvWisFA  547 (677)
T KOG1915|consen  468 PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVKVWISFA  547 (677)
T ss_pred             hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccchHHHhHH
Confidence            4567788888877788999999999999998753333335567777787789999999999999987 556666888877


Q ss_pred             HHHH-----hcC-----------CHHHHHHHHHHHHhc----CCCC--CchHHHHHHHHHhcCCcHHHHHHHHHHHh
Q 007573          481 AACV-----INL-----------NVELGELAAKKMREL----DPQN--SAVYVMLSNLYAAAGMWRDVTRVRLLMKE  535 (597)
Q Consensus       481 ~~~~-----~~g-----------~~~~a~~~~~~~~~~----~p~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  535 (597)
                      ..-.     +.+           +...|..+|+++...    +|+.  ...+..+.+.-...|...+...+-..|.+
T Consensus       548 ~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~~k~~~~KeeR~~LLEaw~~~E~~~G~~~d~~~V~s~mPk  624 (677)
T KOG1915|consen  548 KFEASASEGQEDEDLAELEITDENIKRARKIFERANTYLKESTPKEERLMLLEAWKNMEETFGTEGDVERVQSKMPK  624 (677)
T ss_pred             HHhccccccccccchhhhhcchhHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHhccH
Confidence            6543     334           567889999988753    3432  22333444445556666666666555543

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=99.72  E-value=8.2e-13  Score=127.78  Aligned_cols=472  Identities=11%  Similarity=0.040  Sum_probs=356.2

Q ss_pred             CChHHHHHHHhhcCC--CCcchHHHHHHHHHhCCChhHHHHHHhhCCC---CCcchHHHHHHHHHcCCChHHHHHHHccC
Q 007573           64 GKISAARQLFDQMTT--KDVITWNAIITGYWQNGFLQESKNLFQSMPV---KNIVSWNCMIAGCIDNDRIDDAFDYFQAM  138 (597)
Q Consensus        64 g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~A~~~~~~~  138 (597)
                      .+.++|+.++.+..+  |.   ..-|.-+|++..-++.|..++.+..+   .+...|.+-...--++|+.+...++..+-
T Consensus       390 E~~~darilL~rAveccp~---s~dLwlAlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rg  466 (913)
T KOG0495|consen  390 EEPEDARILLERAVECCPQ---SMDLWLALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRG  466 (913)
T ss_pred             cChHHHHHHHHHHHHhccc---hHHHHHHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence            444445555555554  21   12233344555566666666666554   37777777777777777777777766654


Q ss_pred             C--------CCChhhHHHHHHHHHcCCChHHHHHHHccCCC------CCchhHHHHHHHHHhCCChhHHHHHHHhcccC-
Q 007573          139 P--------ERNTATYNAMISGFLKHGRLEEATRLFEQMPR------RNVISYTAMLDGFMKKGEVDKARALSDYMSFK-  203 (597)
Q Consensus       139 ~--------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-  203 (597)
                      .        +-+-..|..=...|-+.|..-.+..+......      .--.+|+.-.+.|.+.+.++-|..+|....+. 
T Consensus       467 l~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvf  546 (913)
T KOG0495|consen  467 LSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVF  546 (913)
T ss_pred             HHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhc
Confidence            4        23444455555555555655555555544331      12347888888888999999999888877432 


Q ss_pred             --CcchHHHHHHHHHcCCChHHHHHHHhhcCCCCCC-chHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHH
Q 007573          204 --NVVSWTVMITGYVKNERFCEARELFYRMPDYDKN-VFVVTAMITGFCKVGMLENARLLFERIQP---KDCVSFNAMIA  277 (597)
Q Consensus       204 --~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~  277 (597)
                        +...|......--..|..+.-..+++.+...-|. ...|......+-..|++..|..++.+.-+   .+...|-.-+.
T Consensus       547 p~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavK  626 (913)
T KOG0495|consen  547 PCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVK  626 (913)
T ss_pred             cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence              4466766666666788999999999988875554 44566667788889999999999987653   45678888899


Q ss_pred             HHHHcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhccchhHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHH
Q 007573          278 GYAQNGVAEEALRLFSGMIKMDMQPDDATLVSVFTACSALQLLNEGRQSHVLVIRNGFEANVSVCNAVITMYSRCGGILD  357 (597)
Q Consensus       278 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  357 (597)
                      ....+.+++.|..+|.+...  ..|+...|.--+..--..+..++|.++++..++.- +.-...|-.+...+-+.++++.
T Consensus       627 le~en~e~eraR~llakar~--~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~f-p~f~Kl~lmlGQi~e~~~~ie~  703 (913)
T KOG0495|consen  627 LEFENDELERARDLLAKARS--ISGTERVWMKSANLERYLDNVEEALRLLEEALKSF-PDFHKLWLMLGQIEEQMENIEM  703 (913)
T ss_pred             HhhccccHHHHHHHHHHHhc--cCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhC-CchHHHHHHHhHHHHHHHHHHH
Confidence            99999999999999998776  46777777666666667889999999998888763 5556778888999999999999


Q ss_pred             HHHHHhccC---CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHh
Q 007573          358 SELAFRQIH---SPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMVKV  434 (597)
Q Consensus       358 A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~  434 (597)
                      |...|..-.   +..+..|-.+...--+.|..-.|..+|++.+-.+ +-+...|...+..-.+.|..+.|..+..++.+ 
T Consensus       704 aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQ-  781 (913)
T KOG0495|consen  704 AREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQ-  781 (913)
T ss_pred             HHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHH-
Confidence            999998765   3445678888888888899999999999988664 45677899999999999999999999988887 


Q ss_pred             cCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHH
Q 007573          435 YGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMPFEADTGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLS  514 (597)
Q Consensus       435 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~  514 (597)
                       ..+.+...|..-|.+..+-++-....+.+++..  -|+.+..++...+.....++.|..-|.++++.+|++..++..+-
T Consensus       782 -ecp~sg~LWaEaI~le~~~~rkTks~DALkkce--~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fy  858 (913)
T KOG0495|consen  782 -ECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCE--HDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFY  858 (913)
T ss_pred             -hCCccchhHHHHHHhccCcccchHHHHHHHhcc--CCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHH
Confidence             455567788888998888888888888888775  45666677777788888999999999999999999999999999


Q ss_pred             HHHHhcCCcHHHHHHHHHHHhCCCccCCCeeEEE
Q 007573          515 NLYAAAGMWRDVTRVRLLMKEQGVTKQCAYSWIE  548 (597)
Q Consensus       515 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~s~~~  548 (597)
                      ..+...|.-++-.++++......  |..|..|..
T Consensus       859 kfel~hG~eed~kev~~~c~~~E--P~hG~~W~a  890 (913)
T KOG0495|consen  859 KFELRHGTEEDQKEVLKKCETAE--PTHGELWQA  890 (913)
T ss_pred             HHHHHhCCHHHHHHHHHHHhccC--CCCCcHHHH
Confidence            99999999999899998876543  455666654

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.69  E-value=1.6e-12  Score=130.66  Aligned_cols=307  Identities=16%  Similarity=0.124  Sum_probs=187.4

Q ss_pred             HHHhcCChHHHHHHHhhcCC---CCcchHHHHHHHHHhCCChhHHHHHHhhCC---CCCcchHHHHHHHHHcCCChHHHH
Q 007573           59 ALSRAGKISAARQLFDQMTT---KDVITWNAIITGYWQNGFLQESKNLFQSMP---VKNIVSWNCMIAGCIDNDRIDDAF  132 (597)
Q Consensus        59 ~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~A~  132 (597)
                      .+...|++++|.+++.++.+   .+...|.+|...|-+.|+.++++..+-.+-   ..|...|..+.....+.|.+.+|.
T Consensus       148 ~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~  227 (895)
T KOG2076|consen  148 NLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQAR  227 (895)
T ss_pred             HHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHH
Confidence            33445999999999999876   456689999999999999999988765443   337788999999999999999999


Q ss_pred             HHHccCCCC---ChhhHHHHHHHHHcCCChHHHHHHHccCCCCCc----h----hHHHHHHHHHhCCChhHHHHHHHhcc
Q 007573          133 DYFQAMPER---NTATYNAMISGFLKHGRLEEATRLFEQMPRRNV----I----SYTAMLDGFMKKGEVDKARALSDYMS  201 (597)
Q Consensus       133 ~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~----~~~~li~~~~~~g~~~~A~~~~~~m~  201 (597)
                      -.|.+..+.   +-..+---...|-+.|+...|...|.++.+.++    .    .--.+++.+...++.+.|.+.++...
T Consensus       228 ~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~  307 (895)
T KOG2076|consen  228 YCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGAL  307 (895)
T ss_pred             HHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            999988833   333444456788899999999998888765333    1    12234566667777788888777763


Q ss_pred             c-----CCcchHHHHHHHHHcCCChHHHHHHHhhcCC-----------------------------CCCCchH-HHHHHH
Q 007573          202 F-----KNVVSWTVMITGYVKNERFCEARELFYRMPD-----------------------------YDKNVFV-VTAMIT  246 (597)
Q Consensus       202 ~-----~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----------------------------~~~~~~~-~~~l~~  246 (597)
                      .     .+...++.++..+.+...++.|.........                             ..++..+ ...+.-
T Consensus       308 s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL  387 (895)
T KOG2076|consen  308 SKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICL  387 (895)
T ss_pred             hhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhh
Confidence            3     2345677777777777777777666554432                             0111112 111111


Q ss_pred             HHHhcCCHHHHHHHHhhcC----CCChhHHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhccchhHH
Q 007573          247 GFCKVGMLENARLLFERIQ----PKDCVSFNAMIAGYAQNGVAEEALRLFSGMIKMDMQPDDATLVSVFTACSALQLLNE  322 (597)
Q Consensus       247 ~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~  322 (597)
                      ...+.+...+++..|-...    ..++..|.-+..+|...|++.+|+.+|..+......-+...|..+..++...|..+.
T Consensus       388 ~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~  467 (895)
T KOG2076|consen  388 VHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEE  467 (895)
T ss_pred             hcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHH
Confidence            1112222233322221111    123345555555666666666666666655554333344455555555555566666


Q ss_pred             HHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHhccC
Q 007573          323 GRQSHVLVIRNGFEANVSVCNAVITMYSRCGGILDSELAFRQIH  366 (597)
Q Consensus       323 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  366 (597)
                      |.+.+..++... +.+..+--.|...+.+.|+.++|.+++..+.
T Consensus       468 A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~  510 (895)
T KOG2076|consen  468 AIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQII  510 (895)
T ss_pred             HHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence            666665555543 3344444455555555566666555555543

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.67  E-value=1.9e-12  Score=120.65  Aligned_cols=447  Identities=11%  Similarity=0.108  Sum_probs=337.1

Q ss_pred             cchHHHHHHHHHhCCChhHHHHHHhhCCCC---CcchHHHHHHHHHcCCChHHHHHHHccCC---CCChhhHHHHHHHHH
Q 007573           81 VITWNAIITGYWQNGFLQESKNLFQSMPVK---NIVSWNCMIAGCIDNDRIDDAFDYFQAMP---ERNTATYNAMISGFL  154 (597)
Q Consensus        81 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~  154 (597)
                      ...|-....--..++++..|.++|++.+..   +...|...+..-.++..+..|..++++..   ++-...|--.+.+--
T Consensus        73 ~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE  152 (677)
T KOG1915|consen   73 MQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEE  152 (677)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence            334555555556678899999999999864   77788888888899999999999999987   444456666777777


Q ss_pred             cCCChHHHHHHHccCC--CCCchhHHHHHHHHHhCCChhHHHHHHHhc--ccCCcchHHHHHHHHHcCCChHHHHHHHhh
Q 007573          155 KHGRLEEATRLFEQMP--RRNVISYTAMLDGFMKKGEVDKARALSDYM--SFKNVVSWTVMITGYVKNERFCEARELFYR  230 (597)
Q Consensus       155 ~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~  230 (597)
                      ..|++..|.++|++-.  +|+...|++.|+.-.+...++.|..+|++.  ..|++.+|....+.-.+.|....+..+|+.
T Consensus       153 ~LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~Vyer  232 (677)
T KOG1915|consen  153 MLGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYER  232 (677)
T ss_pred             HhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence            8899999999999876  599999999999999999999999999997  679999999999999999999999999999


Q ss_pred             cCCCCCCc----hHHHHHHHHHHhcCCHHHHHHHHhhc----CCCC-hhHHHHHHHHHHHcCChhHHHHH--------HH
Q 007573          231 MPDYDKNV----FVVTAMITGFCKVGMLENARLLFERI----QPKD-CVSFNAMIAGYAQNGVAEEALRL--------FS  293 (597)
Q Consensus       231 ~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~-~~~~~~li~~~~~~g~~~~A~~~--------~~  293 (597)
                      +.+.-.+.    ..+.+....=.++..++.|.-+|+-.    ++.. ...|......--+-|+.....+.        |+
T Consensus       233 Aie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE  312 (677)
T KOG1915|consen  233 AIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYE  312 (677)
T ss_pred             HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHH
Confidence            87733332    34455555555677888888888654    3322 33455555444455664443332        33


Q ss_pred             HhHHCCCCCCHHHHHHHHHHHhccchhHHHHHHHHHHHHhCCCCcc--cHHHHHHHHH--------HhcCCHHHHHHHHh
Q 007573          294 GMIKMDMQPDDATLVSVFTACSALQLLNEGRQSHVLVIRNGFEANV--SVCNAVITMY--------SRCGGILDSELAFR  363 (597)
Q Consensus       294 ~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~--------~~~g~~~~A~~~~~  363 (597)
                      .+...+ +-|-.+|--.+..-...|+.+...++++.++..- +|-.  ..|...|..+        ....+.+.+.++++
T Consensus       313 ~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIanv-pp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq  390 (677)
T KOG1915|consen  313 KEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIANV-PPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQ  390 (677)
T ss_pred             HHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccC-CchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence            444432 4567778788888888899999999999998764 4421  1222222221        34678899999997


Q ss_pred             ccC---CCChhhHHH----HHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcC
Q 007573          364 QIH---SPNLVSWNT----IIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMVKVYG  436 (597)
Q Consensus       364 ~~~---~~~~~~~~~----li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~  436 (597)
                      ...   +....|+.-    ......++.+...|.+++...+  |.-|...+|...|..-.+.+.++.+..+++....   
T Consensus       391 ~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle---  465 (677)
T KOG1915|consen  391 ACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLE---  465 (677)
T ss_pred             HHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHh---
Confidence            765   444444444    4444557889999999999876  6789999999999999999999999999999875   


Q ss_pred             CCC-ChHHHHHHHHHHhhcCCHHHHHHHHhhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHH
Q 007573          437 IIP-SSEHYTCLVDILSRAGQLEKAWQITQGMPFEAD----TGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYV  511 (597)
Q Consensus       437 ~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~  511 (597)
                      ..| +..+|......-...|+.+.|..+|.-...+|.    ...|.+.|..-...|.++.|..+|+++++..+... ++.
T Consensus       466 ~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~k-vWi  544 (677)
T KOG1915|consen  466 FSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVK-VWI  544 (677)
T ss_pred             cChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccch-HHH
Confidence            344 467888888888899999999999998775663    34677788877899999999999999999877644 565


Q ss_pred             HHHHHHH-----hcC-----------CcHHHHHHHHHHHh
Q 007573          512 MLSNLYA-----AAG-----------MWRDVTRVRLLMKE  535 (597)
Q Consensus       512 ~l~~~~~-----~~g-----------~~~~A~~~~~~~~~  535 (597)
                      ..+..-.     ..|           ....|.++|++...
T Consensus       545 sFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~  584 (677)
T KOG1915|consen  545 SFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANT  584 (677)
T ss_pred             hHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHH
Confidence            5555443     344           56678888887754

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.66  E-value=4.3e-16  Score=147.68  Aligned_cols=215  Identities=14%  Similarity=0.156  Sum_probs=113.5

Q ss_pred             ccchhHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHhccC--CCChhhHHHHHHHHHHcCCHHHHHHHH
Q 007573          316 ALQLLNEGRQSHVLVIRNGFEANVSVCNAVITMYSRCGGILDSELAFRQIH--SPNLVSWNTIIAAFAQHGHYEKALIFF  393 (597)
Q Consensus       316 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~  393 (597)
                      ..++.+.|...++.+...+ +.++..+..++.. ...+++++|..++....  .++...+..++..+...++++++.+++
T Consensus        56 ~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l  133 (280)
T PF13429_consen   56 SLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQDGDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELL  133 (280)
T ss_dssp             ----------------------------------------------------------------H-HHHTT-HHHHHHHH
T ss_pred             ccccccccccccccccccc-ccccccccccccc-cccccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHH
Confidence            3444444444444444433 2244455555555 57778888887776653  456677788888899999999999999


Q ss_pred             HHHHHCC-CCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHhhCC--C
Q 007573          394 SQMGLNG-FDPDGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIP-SSEHYTCLVDILSRAGQLEKAWQITQGMP--F  469 (597)
Q Consensus       394 ~~m~~~g-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~  469 (597)
                      +.+.... .+++...|..+...+.+.|+.++|.+.+++..+.   .| +......++..+...|+.+++.++++...  .
T Consensus       134 ~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~---~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~  210 (280)
T PF13429_consen  134 EKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALEL---DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA  210 (280)
T ss_dssp             HHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH----TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-
T ss_pred             HHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC
Confidence            9987543 3456777888888999999999999999999864   45 47788899999999999999888887664  3


Q ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHh
Q 007573          470 EADTGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRVRLLMKE  535 (597)
Q Consensus       470 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  535 (597)
                      +.|+..|..+..++...|+.++|...++++.+.+|+|+.+...++.++...|+.++|.+++++..+
T Consensus       211 ~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~  276 (280)
T PF13429_consen  211 PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQALR  276 (280)
T ss_dssp             HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT-----------------
T ss_pred             cCHHHHHHHHHHHhcccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            456678899999999999999999999999999999999999999999999999999999887643

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.65  E-value=3.7e-13  Score=125.95  Aligned_cols=214  Identities=19%  Similarity=0.127  Sum_probs=172.6

Q ss_pred             ccchhHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHhccC---CCChhhHHHHHHHHHHcCCHHHHHHH
Q 007573          316 ALQLLNEGRQSHVLVIRNGFEANVSVCNAVITMYSRCGGILDSELAFRQIH---SPNLVSWNTIIAAFAQHGHYEKALIF  392 (597)
Q Consensus       316 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~  392 (597)
                      -.|+.-.+..-++.+++.... +...|-.+..+|....+.++....|+...   +.|+.+|..-.+.+.-.+++++|..-
T Consensus       338 L~g~~~~a~~d~~~~I~l~~~-~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aD  416 (606)
T KOG0547|consen  338 LKGDSLGAQEDFDAAIKLDPA-FNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIAD  416 (606)
T ss_pred             hcCCchhhhhhHHHHHhcCcc-cchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHH
Confidence            356777777888888877633 33336667778888999999999998776   56677888888888888999999999


Q ss_pred             HHHHHHCCCCC-ChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC-CC
Q 007573          393 FSQMGLNGFDP-DGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMP-FE  470 (597)
Q Consensus       393 ~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~  470 (597)
                      |++.+..  .| +...|..+..+..+.+++++++..|++..+  .++--++.|+....++...++++.|.+.|+... .+
T Consensus       417 F~Kai~L--~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kk--kFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE  492 (606)
T KOG0547|consen  417 FQKAISL--DPENAYAYIQLCCALYRQHKIAESMKTFEEAKK--KFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELE  492 (606)
T ss_pred             HHHHhhc--ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhc
Confidence            9999865  44 456777777788899999999999999987  455568899999999999999999999998754 44


Q ss_pred             CC---------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHh
Q 007573          471 AD---------TGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRVRLLMKE  535 (597)
Q Consensus       471 p~---------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  535 (597)
                      |+         +.+-.+++.. .-.+++.+|+.+++++++++|....+|..|+.....+|+.++|+++|++...
T Consensus       493 ~~~~~~~v~~~plV~Ka~l~~-qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~  565 (606)
T KOG0547|consen  493 PREHLIIVNAAPLVHKALLVL-QWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQ  565 (606)
T ss_pred             cccccccccchhhhhhhHhhh-chhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            44         1222223222 2348999999999999999999999999999999999999999999998654

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=99.65  E-value=7e-12  Score=121.48  Aligned_cols=452  Identities=14%  Similarity=0.114  Sum_probs=359.8

Q ss_pred             HHHHHHHHhcCChHHHHHHHhhcCC---CCcchHHHHHHHHHhCCChhHHHHHHhhCCC--------CCcchHHHHHHHH
Q 007573           54 NAKISALSRAGKISAARQLFDQMTT---KDVITWNAIITGYWQNGFLQESKNLFQSMPV--------KNIVSWNCMIAGC  122 (597)
Q Consensus        54 ~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~ll~~~  122 (597)
                      .-|.-+|++..-++.|.+++++..+   .+...|.+-...--++|+.+...++..+...        -|...|..=...|
T Consensus       410 ~dLwlAlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~  489 (913)
T KOG0495|consen  410 MDLWLALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEAC  489 (913)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHH
Confidence            3456677888889999999998866   5666787776666788998888888777642        1666777777788


Q ss_pred             HcCCChHHHHHHHccCC------CCChhhHHHHHHHHHcCCChHHHHHHHccCCC---CCchhHHHHHHHHHhCCChhHH
Q 007573          123 IDNDRIDDAFDYFQAMP------ERNTATYNAMISGFLKHGRLEEATRLFEQMPR---RNVISYTAMLDGFMKKGEVDKA  193 (597)
Q Consensus       123 ~~~~~~~~A~~~~~~~~------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A  193 (597)
                      -+.|.+-.+..+.....      +.-..+|+.-...|.+.+.++-|+.+|....+   .+...|...+..--..|..+..
T Consensus       490 e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl  569 (913)
T KOG0495|consen  490 EDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESL  569 (913)
T ss_pred             hhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHH
Confidence            88888777777766655      23346888889999999999999999988775   3556788877777778999999


Q ss_pred             HHHHHhccc---CCcchHHHHHHHHHcCCChHHHHHHHhhcCCCCCC-chHHHHHHHHHHhcCCHHHHHHHHhhcCC--C
Q 007573          194 RALSDYMSF---KNVVSWTVMITGYVKNERFCEARELFYRMPDYDKN-VFVVTAMITGFCKVGMLENARLLFERIQP--K  267 (597)
Q Consensus       194 ~~~~~~m~~---~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~  267 (597)
                      ..+|++.+.   .....|......+-..|+...|..++..+.+..|+ ..+|-+-+.......+++.|..+|.+...  +
T Consensus       570 ~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sg  649 (913)
T KOG0495|consen  570 EALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISG  649 (913)
T ss_pred             HHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCC
Confidence            999999843   34456666677777889999999999999886664 56888889999999999999999988654  5


Q ss_pred             ChhHHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCHH-HHHHHHHHHhccchhHHHHHHHHHHHHhCCCCcccHHHHHH
Q 007573          268 DCVSFNAMIAGYAQNGVAEEALRLFSGMIKMDMQPDDA-TLVSVFTACSALQLLNEGRQSHVLVIRNGFEANVSVCNAVI  346 (597)
Q Consensus       268 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  346 (597)
                      +...|.--+...-..++.++|++++++.++.  -|+-. .|..+...+.+.++.+.|...|..-.+. ++..+..|-.|.
T Consensus       650 TeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLa  726 (913)
T KOG0495|consen  650 TERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLA  726 (913)
T ss_pred             cchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHH
Confidence            6667777777777789999999999998874  56544 4555666777888888888877665544 366788899999


Q ss_pred             HHHHhcCCHHHHHHHHhccC---CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHH
Q 007573          347 TMYSRCGGILDSELAFRQIH---SPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNE  423 (597)
Q Consensus       347 ~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~  423 (597)
                      ..--+.|.+-.|+.++++..   +.+...|-..|..-.+.|+.+.|..+..+..+. ++-+...|..-|...-+.++-..
T Consensus       727 kleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rkTk  805 (913)
T KOG0495|consen  727 KLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKTK  805 (913)
T ss_pred             HHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCcccchH
Confidence            99999999999999999876   567889999999999999999999999988865 45556677777777777766444


Q ss_pred             HHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 007573          424 SMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMP-FEAD-TGVWGSLLAACVINLNVELGELAAKKMRE  501 (597)
Q Consensus       424 a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  501 (597)
                      ....++      ....|+.+.-.+...+....+++.|.+.|.+.. ..|| ..+|.-+...+..+|.-+.-.+++.+...
T Consensus       806 s~DALk------kce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~  879 (913)
T KOG0495|consen  806 SIDALK------KCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCET  879 (913)
T ss_pred             HHHHHH------hccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence            444433      335678888899999999999999999998876 5665 56898899999999999999999999999


Q ss_pred             cCCCCCchHHHHHH
Q 007573          502 LDPQNSAVYVMLSN  515 (597)
Q Consensus       502 ~~p~~~~~~~~l~~  515 (597)
                      -+|.....+..+..
T Consensus       880 ~EP~hG~~W~avSK  893 (913)
T KOG0495|consen  880 AEPTHGELWQAVSK  893 (913)
T ss_pred             cCCCCCcHHHHHhh
Confidence            99998766655443

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.65  E-value=6.1e-13  Score=133.70  Aligned_cols=326  Identities=14%  Similarity=0.143  Sum_probs=207.5

Q ss_pred             HHHHHHHhCCChhHHHHHHHhcccC---CcchHHHHHHHHHcCCChHHHHHHHhhcCCCCC-CchHHHHHHHHHHhcCCH
Q 007573          179 AMLDGFMKKGEVDKARALSDYMSFK---NVVSWTVMITGYVKNERFCEARELFYRMPDYDK-NVFVVTAMITGFCKVGML  254 (597)
Q Consensus       179 ~li~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~  254 (597)
                      ...+.....|+.++|..++.+.++.   ....|.+|...|-..|+.+++....-.+..+.| |...|..+.....+.|++
T Consensus       144 ~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i  223 (895)
T KOG2076|consen  144 GEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNI  223 (895)
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccH
Confidence            3344444457777777777777443   346777777777777777777776655555444 455677777777777777


Q ss_pred             HHHHHHHhhcCCC---ChhHHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCHHHHHH----HHHHHhccchhHHHHHHH
Q 007573          255 ENARLLFERIQPK---DCVSFNAMIAGYAQNGVAEEALRLFSGMIKMDMQPDDATLVS----VFTACSALQLLNEGRQSH  327 (597)
Q Consensus       255 ~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~----ll~~~~~~~~~~~a~~~~  327 (597)
                      +.|.-.|.+..+.   +...+-.-+..|-+.|+...|+..|.++.+...+.|...+..    ++..+...++.+.|.+.+
T Consensus       224 ~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~l  303 (895)
T KOG2076|consen  224 NQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKAL  303 (895)
T ss_pred             HHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            7777777765543   333333445567777777777777777776532222222222    222233333334444444


Q ss_pred             HHHHHh-CCCCcccHHHHHHHHHHhcCCHHHHHHHHhccCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHH--------
Q 007573          328 VLVIRN-GFEANVSVCNAVITMYSRCGGILDSELAFRQIHSPNLVSWNTIIAAFAQHGHYEKALIFFSQMGL--------  398 (597)
Q Consensus       328 ~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--------  398 (597)
                      ...... +-..+...++                               .++..+.+...++.|......+..        
T Consensus       304 e~~~s~~~~~~~~ed~n-------------------------------i~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~  352 (895)
T KOG2076|consen  304 EGALSKEKDEASLEDLN-------------------------------ILAELFLKNKQSDKALMKIVDDRNRESEKDDS  352 (895)
T ss_pred             HHHHhhccccccccHHH-------------------------------HHHHHHHHhHHHHHhhHHHHHHhccccCCChh
Confidence            433331 1122333444                               444444444445555444444433        


Q ss_pred             -------------------CCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC--ChHHHHHHHHHHhhcCCH
Q 007573          399 -------------------NGFDPDGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIP--SSEHYTCLVDILSRAGQL  457 (597)
Q Consensus       399 -------------------~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~  457 (597)
                                         .++.++... ..+.-++.+....+....+....... .+.|  +...|.-+.++|.+.|++
T Consensus       353 e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~rl~icL~~L~~~e~~e~ll~~l~~~-n~~~~d~~dL~~d~a~al~~~~~~  430 (895)
T KOG2076|consen  353 EWDTDERRREEPNALCEVGKELSYDLRV-IRLMICLVHLKERELLEALLHFLVED-NVWVSDDVDLYLDLADALTNIGKY  430 (895)
T ss_pred             hhhhhhhccccccccccCCCCCCccchh-HhHhhhhhcccccchHHHHHHHHHHh-cCChhhhHHHHHHHHHHHHhcccH
Confidence                               112233222 12222334444444444444444443 5444  477899999999999999


Q ss_pred             HHHHHHHhhCCCC-C--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHH
Q 007573          458 EKAWQITQGMPFE-A--DTGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRVRLLMK  534 (597)
Q Consensus       458 ~~A~~~~~~~~~~-p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  534 (597)
                      .+|.+++..+... +  +...|..++..|...|..++|++.|++++...|++..+...|+.++..+|+.++|.+++..+.
T Consensus       431 ~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~  510 (895)
T KOG2076|consen  431 KEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQII  510 (895)
T ss_pred             HHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence            9999999988722 2  466899999999999999999999999999999999999999999999999999999999876


Q ss_pred             hCC
Q 007573          535 EQG  537 (597)
Q Consensus       535 ~~~  537 (597)
                      .-+
T Consensus       511 ~~D  513 (895)
T KOG2076|consen  511 NPD  513 (895)
T ss_pred             CCC
Confidence            433

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.64  E-value=1.2e-13  Score=127.89  Aligned_cols=416  Identities=12%  Similarity=0.104  Sum_probs=278.8

Q ss_pred             HHHHHHcCCChHHHHHHHccCCC----CCh-hhHHHHHHHHHcCCChHHHHHHHccCCC--CC------chhHHHHHHHH
Q 007573          118 MIAGCIDNDRIDDAFDYFQAMPE----RNT-ATYNAMISGFLKHGRLEEATRLFEQMPR--RN------VISYTAMLDGF  184 (597)
Q Consensus       118 ll~~~~~~~~~~~A~~~~~~~~~----~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~------~~~~~~li~~~  184 (597)
                      |.+-|.......+|+..++-+..    ||. ..-..+.+.+.+...+.+|++.++-...  |+      ....+.+.-.+
T Consensus       207 laqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtf  286 (840)
T KOG2003|consen  207 LAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTF  286 (840)
T ss_pred             HHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeE
Confidence            33445566667788888877662    232 3334456778888899999988765432  21      22455666678


Q ss_pred             HhCCChhHHHHHHHhcc--cCCcchHHHHHHHHHcCCChHHHHHHHhhcCCCC--------------CCchHHHH-----
Q 007573          185 MKKGEVDKARALSDYMS--FKNVVSWTVMITGYVKNERFCEARELFYRMPDYD--------------KNVFVVTA-----  243 (597)
Q Consensus       185 ~~~g~~~~A~~~~~~m~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--------------~~~~~~~~-----  243 (597)
                      .+.|.++.|+..|+...  .|+-.+-..|+-++...|+.++..+.|..+..++              |+....+.     
T Consensus       287 iq~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd  366 (840)
T KOG2003|consen  287 IQAGQYDDAINSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKND  366 (840)
T ss_pred             EecccchhhHhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhH
Confidence            88999999999998874  4666665566667777899999999998887621              22222221     


Q ss_pred             HHHHHHhcC--CHHHHHHHHhhcC----CCChh---HH----------H--------HHHHHHHHcCChhHHHHHHHHhH
Q 007573          244 MITGFCKVG--MLENARLLFERIQ----PKDCV---SF----------N--------AMIAGYAQNGVAEEALRLFSGMI  296 (597)
Q Consensus       244 l~~~~~~~g--~~~~A~~~~~~~~----~~~~~---~~----------~--------~li~~~~~~g~~~~A~~~~~~m~  296 (597)
                      .+.-.-+..  +.++++-.--++.    .+|-.   -|          .        .-...|.++|+++.|+++++-..
T Consensus       367 ~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~  446 (840)
T KOG2003|consen  367 HLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFE  446 (840)
T ss_pred             HHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHH
Confidence            122222221  1222222222222    22210   01          1        11234788999999999998887


Q ss_pred             HCCCCCCHHHHH--HHHHHHhccchhHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHhccCCCChhhHH
Q 007573          297 KMDMQPDDATLV--SVFTACSALQLLNEGRQSHVLVIRNGFEANVSVCNAVITMYSRCGGILDSELAFRQIHSPNLVSWN  374 (597)
Q Consensus       297 ~~g~~p~~~~~~--~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~  374 (597)
                      +..-+.-...-+  ..+.-+-...++..|.++-+..+... ..+......-.+.....|++++|.+.+++....|...-.
T Consensus       447 ~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~e  525 (840)
T KOG2003|consen  447 KKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTE  525 (840)
T ss_pred             hccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHH
Confidence            654332222222  22222223456777777766665433 222222222223334569999999999999876655433


Q ss_pred             HH---HHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHH
Q 007573          375 TI---IAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDIL  451 (597)
Q Consensus       375 ~l---i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~  451 (597)
                      ++   ...+-..|+.++|++.|-++..- +..+......+...|....+..+|++++-+...  -++.|+.....|.+.|
T Consensus       526 alfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~s--lip~dp~ilskl~dly  602 (840)
T KOG2003|consen  526 ALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANS--LIPNDPAILSKLADLY  602 (840)
T ss_pred             HHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcc--cCCCCHHHHHHHHHHh
Confidence            33   33466789999999999887642 345667778888899999999999999877653  4555689999999999


Q ss_pred             hhcCCHHHHHHHH-hhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcHHHHHH
Q 007573          452 SRAGQLEKAWQIT-QGMP-FEADTGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRV  529 (597)
Q Consensus       452 ~~~g~~~~A~~~~-~~~~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~  529 (597)
                      -+.|+...|.+.. +... ++-+..+..-|..-|....-.++++.+|+++--+.|+.......++.++.+.|++.+|.++
T Consensus       603 dqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~  682 (840)
T KOG2003|consen  603 DQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDL  682 (840)
T ss_pred             hcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHH
Confidence            9999999999975 4455 5556777777777788887889999999999999999888788889999999999999999


Q ss_pred             HHHHHhCC
Q 007573          530 RLLMKEQG  537 (597)
Q Consensus       530 ~~~~~~~~  537 (597)
                      |+.+.++-
T Consensus       683 yk~~hrkf  690 (840)
T KOG2003|consen  683 YKDIHRKF  690 (840)
T ss_pred             HHHHHHhC
Confidence            99987654

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.63  E-value=6.5e-12  Score=117.03  Aligned_cols=359  Identities=11%  Similarity=0.008  Sum_probs=248.8

Q ss_pred             CCcchHHHHHHHHHcCCChHHHHHHHhhcCCCCC-CchHHHHHHHHHHhcCCHHHHHHHHhhcCCCChh-HHHHHHHHHH
Q 007573          203 KNVVSWTVMITGYVKNERFCEARELFYRMPDYDK-NVFVVTAMITGFCKVGMLENARLLFERIQPKDCV-SFNAMIAGYA  280 (597)
Q Consensus       203 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~li~~~~  280 (597)
                      .|...+-.....+-+.|....|+..+.......| ....|..|..   -..+.+.+..+...+...+.. .--.+..++.
T Consensus       162 ~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~---lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~  238 (559)
T KOG1155|consen  162 KDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSE---LITDIEILSILVVGLPSDMHWMKKFFLKKAYQ  238 (559)
T ss_pred             chhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHH---hhchHHHHHHHHhcCcccchHHHHHHHHHHHH
Confidence            3444445555566677888888887776655222 3333433333   334455554444444433222 1123445566


Q ss_pred             HcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhccchhHHHHHHHHHHHHhCC--CCcccHHHHHHHHHHhcCCHHH-
Q 007573          281 QNGVAEEALRLFSGMIKMDMQPDDATLVSVFTACSALQLLNEGRQSHVLVIRNGF--EANVSVCNAVITMYSRCGGILD-  357 (597)
Q Consensus       281 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~-  357 (597)
                      .....++++.-.......|+.-....-+....+.-...++++|+.+|+++.+...  -.|..+|..++..-..+.++.- 
T Consensus       239 el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~L  318 (559)
T KOG1155|consen  239 ELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYL  318 (559)
T ss_pred             HHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHH
Confidence            6667888888888888877665555544555555677899999999999988742  1256667666544333222222 


Q ss_pred             HHHHHhccCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHhccCcHHHHHHHHHHhHHhcC
Q 007573          358 SELAFRQIHSPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPD-GITFLSLLSACGHAGKVNESMDLFELMVKVYG  436 (597)
Q Consensus       358 A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~  436 (597)
                      |..++ .+.+--+.|..++..-|.-.++.++|+..|++..+.  .|. ...|+.+.+-|....+...|.+.++.+++.  
T Consensus       319 A~~v~-~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkL--Np~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi--  393 (559)
T KOG1155|consen  319 AQNVS-NIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKL--NPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDI--  393 (559)
T ss_pred             HHHHH-HhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhc--CcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhc--
Confidence            22222 233344567777778888899999999999999875  454 456777788899999999999999998852  


Q ss_pred             CCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHH
Q 007573          437 IIPSSEHYTCLVDILSRAGQLEKAWQITQGMP-FEA-DTGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLS  514 (597)
Q Consensus       437 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~  514 (597)
                      -+.|-..|-.|..+|.-.+.+.-|+-+|++.. .+| |...|.+|+..|.+.++.++|++.|.+++..+..+..++..|+
T Consensus       394 ~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~La  473 (559)
T KOG1155|consen  394 NPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLA  473 (559)
T ss_pred             CchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHH
Confidence            23467889999999999999999999999876 455 7889999999999999999999999999999888899999999


Q ss_pred             HHHHhcCCcHHHHHHHHHHHhCCCccCCCeeEEEECCEEEEEEeCCCCCcchHHHHHHHHHHHHHHhhcCCccc
Q 007573          515 NLYAAAGMWRDVTRVRLLMKEQGVTKQCAYSWIEIGNKVHYFLGGDMSHPCIDKIHLELKRASVQMKSVDDFVE  588 (597)
Q Consensus       515 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~  588 (597)
                      ++|-+.++.++|...+++-.+.-.  ..                 ....|+..++...|..-..+++..+..+.
T Consensus       474 kLye~l~d~~eAa~~yek~v~~~~--~e-----------------g~~~~~t~ka~~fLA~~f~k~~~~~~As~  528 (559)
T KOG1155|consen  474 KLYEELKDLNEAAQYYEKYVEVSE--LE-----------------GEIDDETIKARLFLAEYFKKMKDFDEASY  528 (559)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHH--hh-----------------cccchHHHHHHHHHHHHHHhhcchHHHHH
Confidence            999999999999999998776210  00                 01245555666666666666655554443

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.59  E-value=1.5e-12  Score=129.16  Aligned_cols=283  Identities=10%  Similarity=0.015  Sum_probs=200.5

Q ss_pred             CCChhHHHHHHHhcccC--Cc-chHHHHHHHHHcCCChHHHHHHHhhcCCCCCCchHHH--HHHHHHHhcCCHHHHHHHH
Q 007573          187 KGEVDKARALSDYMSFK--NV-VSWTVMITGYVKNERFCEARELFYRMPDYDKNVFVVT--AMITGFCKVGMLENARLLF  261 (597)
Q Consensus       187 ~g~~~~A~~~~~~m~~~--~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~--~l~~~~~~~g~~~~A~~~~  261 (597)
                      .|++++|.+.+......  ++ ..|.....+..+.|+++.|...+.++.+..|+.....  .....+...|+++.|...+
T Consensus        97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l  176 (398)
T PRK10747         97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGV  176 (398)
T ss_pred             CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            57888887777665332  12 2333334455778888888888888887777765433  3366778888888888888


Q ss_pred             hhcCC---CChhHHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhccchhHHHHHHHHHHHHhCCCCc
Q 007573          262 ERIQP---KDCVSFNAMIAGYAQNGVAEEALRLFSGMIKMDMQPDDATLVSVFTACSALQLLNEGRQSHVLVIRNGFEAN  338 (597)
Q Consensus       262 ~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~  338 (597)
                      +++.+   .++.....+...|.+.|++++|.+++..+.+.+..++.. ...+-.                          
T Consensus       177 ~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~-~~~l~~--------------------------  229 (398)
T PRK10747        177 DKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEH-RAMLEQ--------------------------  229 (398)
T ss_pred             HHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHH-HHHHHH--------------------------
Confidence            87654   456678888888888899999999998888876443221 110000                          


Q ss_pred             ccHHHHHHHHHHhcCCHHHHHHHHhccC---CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHH
Q 007573          339 VSVCNAVITMYSRCGGILDSELAFRQIH---SPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSAC  415 (597)
Q Consensus       339 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~  415 (597)
                       ..|..++....+..+.+...++++.+.   +.++.....+...+...|+.++|.+.+++..+.  .|+....  ++.+.
T Consensus       230 -~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~  304 (398)
T PRK10747        230 -QAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPR  304 (398)
T ss_pred             -HHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhh
Confidence             011112222222334455556666554   457778888889999999999999999988874  5555322  23344


Q ss_pred             hccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCCCHHHHHHHHHHHHhcCCHHHHHH
Q 007573          416 GHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMP-FEADTGVWGSLLAACVINLNVELGEL  494 (597)
Q Consensus       416 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~a~~  494 (597)
                      ...++.+++.+..+...+.  .+-|+..+.++...+.+.|++++|.+.|+... ..|+...+..+...+.+.|+.++|.+
T Consensus       305 l~~~~~~~al~~~e~~lk~--~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~  382 (398)
T PRK10747        305 LKTNNPEQLEKVLRQQIKQ--HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAA  382 (398)
T ss_pred             ccCCChHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence            4568999999999988864  34457778889999999999999999999876 77999998899999999999999999


Q ss_pred             HHHHHHhcC
Q 007573          495 AAKKMRELD  503 (597)
Q Consensus       495 ~~~~~~~~~  503 (597)
                      ++++.+.+-
T Consensus       383 ~~~~~l~~~  391 (398)
T PRK10747        383 MRRDGLMLT  391 (398)
T ss_pred             HHHHHHhhh
Confidence            999998754

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=99.58  E-value=3e-10  Score=110.24  Aligned_cols=472  Identities=14%  Similarity=0.163  Sum_probs=301.2

Q ss_pred             CCCcchHHHHHHHHHhcCChHHHHHHHhhcCC-----CCcchHHHHHHHHHhCCChhHHHHHHhhCCCCCcchHHHHHHH
Q 007573           47 TQYVFVNNAKISALSRAGKISAARQLFDQMTT-----KDVITWNAIITGYWQNGFLQESKNLFQSMPVKNIVSWNCMIAG  121 (597)
Q Consensus        47 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~  121 (597)
                      +.-+.+|-..++.+.++|++..-+..|++...     .....|...+.-....|-++-++++|++..+-++..-+-.|..
T Consensus        99 HkmpRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~eeyie~  178 (835)
T KOG2047|consen   99 HKMPRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREEYIEY  178 (835)
T ss_pred             hcCCHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHHHHHH
Confidence            56677888889999999999999999998754     3445788889888889999999999999998888888899999


Q ss_pred             HHcCCChHHHHHHHccCCC----------CCh--------------------------------------hhHHHHHHHH
Q 007573          122 CIDNDRIDDAFDYFQAMPE----------RNT--------------------------------------ATYNAMISGF  153 (597)
Q Consensus       122 ~~~~~~~~~A~~~~~~~~~----------~~~--------------------------------------~~~~~l~~~~  153 (597)
                      ++..+++++|.+.+.....          .+.                                      ..|.+|..-|
T Consensus       179 L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYY  258 (835)
T KOG2047|consen  179 LAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYY  258 (835)
T ss_pred             HHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHH
Confidence            9999999999988888761          111                                      2355666666


Q ss_pred             HcCCChHHHHHHHccCCCC--CchhHHHHHHHHHhC----------------CC------hhHHHHHHHhcc--------
Q 007573          154 LKHGRLEEATRLFEQMPRR--NVISYTAMLDGFMKK----------------GE------VDKARALSDYMS--------  201 (597)
Q Consensus       154 ~~~g~~~~A~~~~~~~~~~--~~~~~~~li~~~~~~----------------g~------~~~A~~~~~~m~--------  201 (597)
                      .+.|++++|..+|++..+.  .+.-++.+.+.|+..                |+      ++-.+.-|+.+.        
T Consensus       259 Ir~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lN  338 (835)
T KOG2047|consen  259 IRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLN  338 (835)
T ss_pred             HHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHH
Confidence            6666666666666654431  122222222222211                11      111111222221        


Q ss_pred             -------cCCcchHHHHHHHHHcCCChHHHHHHHhhcCC-CCCC------chHHHHHHHHHHhcCCHHHHHHHHhhcCCC
Q 007573          202 -------FKNVVSWTVMITGYVKNERFCEARELFYRMPD-YDKN------VFVVTAMITGFCKVGMLENARLLFERIQPK  267 (597)
Q Consensus       202 -------~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  267 (597)
                             ..++..|.....  ...|+..+-...|.++.+ ++|.      ...|..+...|-..|+++.|..+|++..+-
T Consensus       339 sVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V  416 (835)
T KOG2047|consen  339 SVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKV  416 (835)
T ss_pred             HHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcC
Confidence                   112222322222  224556666666666544 3332      335788999999999999999999997763


Q ss_pred             C-------hhHHHHHHHHHHHcCChhHHHHHHHHhHHCCCC----------C-CH------HHHHHHHHHHhccchhHHH
Q 007573          268 D-------CVSFNAMIAGYAQNGVAEEALRLFSGMIKMDMQ----------P-DD------ATLVSVFTACSALQLLNEG  323 (597)
Q Consensus       268 ~-------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~----------p-~~------~~~~~ll~~~~~~~~~~~a  323 (597)
                      +       ..+|......=.++.+++.|++++++...-.-.          | ..      ..|...+..--..|-++..
T Consensus       417 ~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfest  496 (835)
T KOG2047|consen  417 PYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFEST  496 (835)
T ss_pred             CccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHH
Confidence            2       136666666677788899999988876532111          1 11      1233334444466788888


Q ss_pred             HHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHhccC----CCCh-hhHHHHHHHHHH---cCCHHHHHHHHHH
Q 007573          324 RQSHVLVIRNGFEANVSVCNAVITMYSRCGGILDSELAFRQIH----SPNL-VSWNTIIAAFAQ---HGHYEKALIFFSQ  395 (597)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~-~~~~~li~~~~~---~g~~~~A~~~~~~  395 (597)
                      +.+++.+++..+.....+. .....+-...-++++.+++++-.    .|++ ..|+..+.-+.+   .-..+.|..+|++
T Consensus       497 k~vYdriidLriaTPqii~-NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEq  575 (835)
T KOG2047|consen  497 KAVYDRIIDLRIATPQIII-NYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQ  575 (835)
T ss_pred             HHHHHHHHHHhcCCHHHHH-HHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence            8999999888754333222 23334555667899999998876    3554 378877766554   3468999999999


Q ss_pred             HHHCCCCCChHHHHHHHHH--HhccCcHHHHHHHHHHhHHhcCCCCC--hHHHHHHHHHHhhcCCHHHHHHHHhhCC-CC
Q 007573          396 MGLNGFDPDGITFLSLLSA--CGHAGKVNESMDLFELMVKVYGIIPS--SEHYTCLVDILSRAGQLEKAWQITQGMP-FE  470 (597)
Q Consensus       396 m~~~g~~p~~~~~~~ll~~--~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~  470 (597)
                      ..+ |.+|...-+..++-+  -.+-|....|+.+++++..  ++++.  ...|+..|.--+..=-+..-..+|++.. .=
T Consensus       576 aL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~--~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~L  652 (835)
T KOG2047|consen  576 ALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS--AVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESL  652 (835)
T ss_pred             HHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhC
Confidence            998 777775433333322  2355888999999999765  56554  4567766643332222223333443332 22


Q ss_pred             CCHHH---HHHHHHHHHhcCCHHHHHHHHHHHHhcC-CCC-CchHHHHHHHHHhcCCcH
Q 007573          471 ADTGV---WGSLLAACVINLNVELGELAAKKMRELD-PQN-SAVYVMLSNLYAAAGMWR  524 (597)
Q Consensus       471 p~~~~---~~~l~~~~~~~g~~~~a~~~~~~~~~~~-p~~-~~~~~~l~~~~~~~g~~~  524 (597)
                      |+..+   ...+...-.+.|..++|..+|...-++- |.. ...+...-..-.+.|+-+
T Consensus       653 p~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGned  711 (835)
T KOG2047|consen  653 PDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGNED  711 (835)
T ss_pred             ChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCCHH
Confidence            44333   2233344567888999999988887764 443 666777777778888833

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.57  E-value=1.2e-11  Score=122.76  Aligned_cols=214  Identities=9%  Similarity=-0.004  Sum_probs=147.1

Q ss_pred             HhccchhHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHhccCC---CCh--------hhHHHHHHHHHH
Q 007573          314 CSALQLLNEGRQSHVLVIRNGFEANVSVCNAVITMYSRCGGILDSELAFRQIHS---PNL--------VSWNTIIAAFAQ  382 (597)
Q Consensus       314 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~--------~~~~~li~~~~~  382 (597)
                      +...|+.+.|...++.+.+.. |.++.+...+...|.+.|++++|.+++..+.+   .+.        .+|..++.....
T Consensus       163 ~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~  241 (398)
T PRK10747        163 QLARNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMA  241 (398)
T ss_pred             HHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444444444433 33444555555555555666665555555441   111        133333444444


Q ss_pred             cCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHH
Q 007573          383 HGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQ  462 (597)
Q Consensus       383 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~  462 (597)
                      ..+.+...++++.+.+. .+.++.....+..++...|+.++|.+++++..+.   .|+....  ++.+....++.+++.+
T Consensus       242 ~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~---~~~~~l~--~l~~~l~~~~~~~al~  315 (398)
T PRK10747        242 DQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR---QYDERLV--LLIPRLKTNNPEQLEK  315 (398)
T ss_pred             hcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCHHHH--HHHhhccCCChHHHHH
Confidence            55566666777666432 2456778888999999999999999999988753   4555322  2334445699999999


Q ss_pred             HHhhCC-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHh
Q 007573          463 ITQGMP-FEAD-TGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRVRLLMKE  535 (597)
Q Consensus       463 ~~~~~~-~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  535 (597)
                      ..++.. ..|+ +..+..+...|...|++++|.+.|+++++..|++. .+..++.++.+.|+.++|.+++++-..
T Consensus       316 ~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~-~~~~La~~~~~~g~~~~A~~~~~~~l~  389 (398)
T PRK10747        316 VLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAY-DYAWLADALDRLHKPEEAAAMRRDGLM  389 (398)
T ss_pred             HHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            998776 4554 55788899999999999999999999999999854 477899999999999999999998755

>TIGR00540 hemY_coli hemY protein

Probab=99.56  E-value=1.9e-11  Score=122.04  Aligned_cols=285  Identities=12%  Similarity=-0.000  Sum_probs=139.1

Q ss_pred             hCCChhHHHHHHHhccc--CCc-chHHHHHHHHHcCCChHHHHHHHhhcCCCCCCch--HHHHHHHHHHhcCCHHHHHHH
Q 007573          186 KKGEVDKARALSDYMSF--KNV-VSWTVMITGYVKNERFCEARELFYRMPDYDKNVF--VVTAMITGFCKVGMLENARLL  260 (597)
Q Consensus       186 ~~g~~~~A~~~~~~m~~--~~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~  260 (597)
                      ..|+++.|.+.+.+...  |+. ..+-....+....|+.+.|.+.+..+.+..|+..  +.......+...|+++.|...
T Consensus        96 ~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~  175 (409)
T TIGR00540        96 AEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHG  175 (409)
T ss_pred             hCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHH
Confidence            35666666666655522  221 2233334455556666666666666555444432  223345555566666666666


Q ss_pred             HhhcCC---CChhHHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhccchhHHHHHHHHHHHHhCCCC
Q 007573          261 FERIQP---KDCVSFNAMIAGYAQNGVAEEALRLFSGMIKMDMQPDDATLVSVFTACSALQLLNEGRQSHVLVIRNGFEA  337 (597)
Q Consensus       261 ~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~  337 (597)
                      ++.+.+   .++..+..+...+...|++++|.+.+..+.+.++.++. .+..+-.                         
T Consensus       176 l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~-~~~~l~~-------------------------  229 (409)
T TIGR00540       176 VDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDE-EFADLEQ-------------------------  229 (409)
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHH-HHHHHHH-------------------------
Confidence            655442   24445556666666666666666666666655432211 1110000                         


Q ss_pred             cccHHHHHHHHHHhcCCHHHHHHHHhccC---CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHH--H-HHH
Q 007573          338 NVSVCNAVITMYSRCGGILDSELAFRQIH---SPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGIT--F-LSL  411 (597)
Q Consensus       338 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~--~-~~l  411 (597)
                        ..+..++..-......+.....++..+   +.+...+..++..+...|+.++|.+.+++..+.  .||...  + ...
T Consensus       230 --~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~  305 (409)
T TIGR00540       230 --KAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCL  305 (409)
T ss_pred             --HHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHH
Confidence              000000111111112233333444443   236667777777777778888888887777764  333321  1 111


Q ss_pred             HHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhh--C-CCCCCHHHHHHHHHHHHhcCC
Q 007573          412 LSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQG--M-PFEADTGVWGSLLAACVINLN  488 (597)
Q Consensus       412 l~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~--~-~~~p~~~~~~~l~~~~~~~g~  488 (597)
                      .......++.+.+.+.++...+..+-.|+.....++...+.+.|++++|.+.|+.  . ...|+...+..+...+.+.|+
T Consensus       306 ~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~  385 (409)
T TIGR00540       306 PIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGD  385 (409)
T ss_pred             HhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCC
Confidence            1112233555666666655554322212113444555555555555555555552  2 134555555555555555555


Q ss_pred             HHHHHHHHHHHH
Q 007573          489 VELGELAAKKMR  500 (597)
Q Consensus       489 ~~~a~~~~~~~~  500 (597)
                      .++|.+++++.+
T Consensus       386 ~~~A~~~~~~~l  397 (409)
T TIGR00540       386 KAEAAAMRQDSL  397 (409)
T ss_pred             HHHHHHHHHHHH
Confidence            555555555544

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.56  E-value=4.9e-11  Score=111.32  Aligned_cols=354  Identities=12%  Similarity=0.047  Sum_probs=251.1

Q ss_pred             CCchhHHHHHHHHHhCCChhHHHHHHHhcccCCcchHHHHHHHHHcCCChHHHHHHHhhcCCCCCCchHHHHHHHHHHhc
Q 007573          172 RNVISYTAMLDGFMKKGEVDKARALSDYMSFKNVVSWTVMITGYVKNERFCEARELFYRMPDYDKNVFVVTAMITGFCKV  251 (597)
Q Consensus       172 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~  251 (597)
                      .|...+-.....+.+.|..+.|+..|...+..-+..|.+.+....-.-+.+.+..+...... +.....---+..++-..
T Consensus       162 ~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~~l~~-~~h~M~~~F~~~a~~el  240 (559)
T KOG1155|consen  162 KDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVVGLPS-DMHWMKKFFLKKAYQEL  240 (559)
T ss_pred             chhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHhcCcc-cchHHHHHHHHHHHHHH
Confidence            34443444445566778888999988888776666666666555444455444443332221 00111112344556666


Q ss_pred             CCHHHHHHHHhhcCC----CChhHHHHHHHHHHHcCChhHHHHHHHHhHHCCC--CCCHHHHHHHHHHHhccchhHHHHH
Q 007573          252 GMLENARLLFERIQP----KDCVSFNAMIAGYAQNGVAEEALRLFSGMIKMDM--QPDDATLVSVFTACSALQLLNEGRQ  325 (597)
Q Consensus       252 g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~~~~~ll~~~~~~~~~~~a~~  325 (597)
                      .+.+++..-.+....    .+...-+....+...+.++++|+.+|+++.+...  --|..+|+.++-.-.....+.-   
T Consensus       241 ~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~---  317 (559)
T KOG1155|consen  241 HQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSY---  317 (559)
T ss_pred             HHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHH---
Confidence            666776665555443    2333334444556677899999999999988631  1256777777655433222211   


Q ss_pred             HHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHhccC---CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 007573          326 SHVLVIRNGFEANVSVCNAVITMYSRCGGILDSELAFRQIH---SPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFD  402 (597)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~  402 (597)
                       +.+-.-.--+.-+.|+..+.+-|.-.++.++|...|++..   +.....|+.|.+-|....+...|++-+++.++-. +
T Consensus       318 -LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p  395 (559)
T KOG1155|consen  318 -LAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-P  395 (559)
T ss_pred             -HHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-c
Confidence             1111111124456788888899999999999999999887   3445689999999999999999999999998753 5


Q ss_pred             CChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHH
Q 007573          403 PDGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIP-SSEHYTCLVDILSRAGQLEKAWQITQGMP--FEADTGVWGSL  479 (597)
Q Consensus       403 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l  479 (597)
                      .|-..|..+.++|.-.+.+.=|+-+|++..+   .+| |+..|.+|.+.|.+.++.++|++.|.+..  .+.+...+..|
T Consensus       396 ~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~---~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~L  472 (559)
T KOG1155|consen  396 RDYRAWYGLGQAYEIMKMHFYALYYFQKALE---LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRL  472 (559)
T ss_pred             hhHHHHhhhhHHHHHhcchHHHHHHHHHHHh---cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHH
Confidence            5778999999999999999999999998874   445 58999999999999999999999999876  33455789999


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHh-------cCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHH
Q 007573          480 LAACVINLNVELGELAAKKMRE-------LDPQNSAVYVMLSNLYAAAGMWRDVTRVRLLMK  534 (597)
Q Consensus       480 ~~~~~~~g~~~~a~~~~~~~~~-------~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  534 (597)
                      ...+.+.++.++|...+++-++       .+|+-..+...|+.-+.+.+++++|..+-....
T Consensus       473 akLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~  534 (559)
T KOG1155|consen  473 AKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVL  534 (559)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHh
Confidence            9999999999999999999887       334335556678888999999999988766544

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.53  E-value=1.8e-12  Score=126.40  Aligned_cols=276  Identities=14%  Similarity=0.041  Sum_probs=216.5

Q ss_pred             CHHHHHHHHhhcCCC--C-hhHHHHHHHHHHHcCChhHHHHHHHHhHHCC--CCCCHHHHHHHHHHHhccchhHHHHHHH
Q 007573          253 MLENARLLFERIQPK--D-CVSFNAMIAGYAQNGVAEEALRLFSGMIKMD--MQPDDATLVSVFTACSALQLLNEGRQSH  327 (597)
Q Consensus       253 ~~~~A~~~~~~~~~~--~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~~~~~ll~~~~~~~~~~~a~~~~  327 (597)
                      +.++|...|..++..  | ......+..+|...+++++|.++|+...+..  ..-+..+|.+.+.-+-..    -+..++
T Consensus       334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~L  409 (638)
T KOG1126|consen  334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSYL  409 (638)
T ss_pred             HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHHH
Confidence            567888888886542  2 3456678889999999999999999988753  122556777766543221    112222


Q ss_pred             -HHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHhccCCC---ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 007573          328 -VLVIRNGFEANVSVCNAVITMYSRCGGILDSELAFRQIHSP---NLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDP  403 (597)
Q Consensus       328 -~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p  403 (597)
                       +.+++. .+..+.+|.++.++|.-+++.+.|++.|++....   ...+|+.+..-+....++|.|...|+..+.  +.|
T Consensus       410 aq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~~~  486 (638)
T KOG1126|consen  410 AQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG--VDP  486 (638)
T ss_pred             HHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--CCc
Confidence             223332 3677899999999999999999999999988743   556888888888889999999999998863  344


Q ss_pred             C-hHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCC-CHHHHHHH
Q 007573          404 D-GITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPS-SEHYTCLVDILSRAGQLEKAWQITQGMP-FEA-DTGVWGSL  479 (597)
Q Consensus       404 ~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l  479 (597)
                      . -..|..+...|.+.++++.|.-.|+.+.   .+.|. ......+...+.+.|+.++|++++++.. .+| |+..--.-
T Consensus       487 rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~---~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~  563 (638)
T KOG1126|consen  487 RHYNAWYGLGTVYLKQEKLEFAEFHFQKAV---EINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHR  563 (638)
T ss_pred             hhhHHHHhhhhheeccchhhHHHHHHHhhh---cCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHH
Confidence            4 3467778889999999999999999887   56665 6677788899999999999999999875 444 55555556


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHhCCC
Q 007573          480 LAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRVRLLMKEQGV  538 (597)
Q Consensus       480 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  538 (597)
                      +..+...+++++|...++++.++-|++..++..++..|.+.|+.+.|+.-|-.+.+..+
T Consensus       564 ~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldp  622 (638)
T KOG1126|consen  564 ASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDP  622 (638)
T ss_pred             HHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCC
Confidence            66777889999999999999999999999999999999999999999998888776443

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.53  E-value=1.1e-12  Score=127.81  Aligned_cols=279  Identities=13%  Similarity=0.100  Sum_probs=178.2

Q ss_pred             hhHHHHHHHhcc--cCC-cchHHHHHHHHHcCCChHHHHHHHhhcCCCCC----CchHHHHHHHHHHhcCCHHHHHHHHh
Q 007573          190 VDKARALSDYMS--FKN-VVSWTVMITGYVKNERFCEARELFYRMPDYDK----NVFVVTAMITGFCKVGMLENARLLFE  262 (597)
Q Consensus       190 ~~~A~~~~~~m~--~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~  262 (597)
                      ..+|+.+|....  .+| ......+.++|...+++++|+++|+.+.+..|    +..+|.+.+--+-+.=.+.---+-+-
T Consensus       335 ~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li  414 (638)
T KOG1126|consen  335 CREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLI  414 (638)
T ss_pred             HHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHH
Confidence            345555554431  112 23334455555555566666666655555443    33344443332221111111001111


Q ss_pred             hcCCCChhHHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhccchhHHHHHHHHHHHHhCCCCcccHH
Q 007573          263 RIQPKDCVSFNAMIAGYAQNGVAEEALRLFSGMIKMDMQPDDATLVSVFTACSALQLLNEGRQSHVLVIRNGFEANVSVC  342 (597)
Q Consensus       263 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  342 (597)
                      ...+..+.+|.++..+|.-+++++.|++.|++..+                                   .+ +....+|
T Consensus       415 ~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ-----------------------------------ld-p~faYay  458 (638)
T KOG1126|consen  415 DTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ-----------------------------------LD-PRFAYAY  458 (638)
T ss_pred             hhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc-----------------------------------cC-Cccchhh
Confidence            11222445555555555555555555555555544                                   32 2245566


Q ss_pred             HHHHHHHHhcCCHHHHHHHHhccCCCChhh---HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccC
Q 007573          343 NAVITMYSRCGGILDSELAFRQIHSPNLVS---WNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAG  419 (597)
Q Consensus       343 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g  419 (597)
                      +.+..-+.....+|+|...|+.....|+..   |-.+...|.+.++++.|.-.|++..+-+ +-+.+....+...+.+.|
T Consensus       459 TLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k  537 (638)
T KOG1126|consen  459 TLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLK  537 (638)
T ss_pred             hhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhh
Confidence            666666667778888888888877655554   4456778999999999999999988643 334566667777888999


Q ss_pred             cHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCCC-HHHHHHHHHHHHhcCCHHHHHHHH
Q 007573          420 KVNESMDLFELMVKVYGIIP-SSEHYTCLVDILSRAGQLEKAWQITQGMP-FEAD-TGVWGSLLAACVINLNVELGELAA  496 (597)
Q Consensus       420 ~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~g~~~~a~~~~  496 (597)
                      +.++|+++++++..   +.| |+..--..+..+...++.++|+..++++. ..|+ ..++-.++..|.+.|+.+.|+.-|
T Consensus       538 ~~d~AL~~~~~A~~---ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f  614 (638)
T KOG1126|consen  538 RKDKALQLYEKAIH---LDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHF  614 (638)
T ss_pred             hhhHHHHHHHHHHh---cCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhh
Confidence            99999999998874   333 34444556777889999999999999987 5565 557788888999999999999999


Q ss_pred             HHHHhcCCCCCc
Q 007573          497 KKMRELDPQNSA  508 (597)
Q Consensus       497 ~~~~~~~p~~~~  508 (597)
                      .-|.+++|+-..
T Consensus       615 ~~A~~ldpkg~~  626 (638)
T KOG1126|consen  615 SWALDLDPKGAQ  626 (638)
T ss_pred             HHHhcCCCccch
Confidence            999999998543

>KOG4422 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.53  E-value=1.4e-10  Score=107.20  Aligned_cols=223  Identities=14%  Similarity=0.169  Sum_probs=111.6

Q ss_pred             CcchHHHHHHHHHhCCChhHHHHHHhhCCCC----CcchHHHHHHHHHcCCChHHHHHHHccCC----CCChhhHHHHHH
Q 007573           80 DVITWNAIITGYWQNGFLQESKNLFQSMPVK----NIVSWNCMIAGCIDNDRIDDAFDYFQAMP----ERNTATYNAMIS  151 (597)
Q Consensus        80 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~ll~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~l~~  151 (597)
                      ...++..||.++++--..++|..+|++....    +..+||.+|.+-.-..+    .+++.+|.    .||..++|++++
T Consensus       206 T~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~Pnl~TfNalL~  281 (625)
T KOG4422|consen  206 TDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKMTPNLFTFNALLS  281 (625)
T ss_pred             CchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCCchHhHHHHHH
Confidence            4446666666666666666666666665432    55566666655332222    33344433    566666666666


Q ss_pred             HHHcCCChHHHHH----HHccCC----CCCchhHHHHHHHHHhCCChhH-HHHHHHhc-----------cc-CCcchHHH
Q 007573          152 GFLKHGRLEEATR----LFEQMP----RRNVISYTAMLDGFMKKGEVDK-ARALSDYM-----------SF-KNVVSWTV  210 (597)
Q Consensus       152 ~~~~~g~~~~A~~----~~~~~~----~~~~~~~~~li~~~~~~g~~~~-A~~~~~~m-----------~~-~~~~~~~~  210 (597)
                      ...+.|+++.|+.    ++.+|+    +|...+|..+|..+++.++..+ |..++.++           .. .|...+..
T Consensus       282 c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~  361 (625)
T KOG4422|consen  282 CAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQS  361 (625)
T ss_pred             HHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHH
Confidence            6666665554433    333333    3556666666666666555533 22222222           11 12334445


Q ss_pred             HHHHHHcCCChHHHHHHHhhcCC------CCCCchHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCC
Q 007573          211 MITGYVKNERFCEARELFYRMPD------YDKNVFVVTAMITGFCKVGMLENARLLFERIQPKDCVSFNAMIAGYAQNGV  284 (597)
Q Consensus       211 ll~~~~~~g~~~~a~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~  284 (597)
                      .+..|.+..+.+.|.++......      +.|+..                            ...-|..+....++...
T Consensus       362 AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~----------------------------~~fYyr~~~~licq~es  413 (625)
T KOG4422|consen  362 AMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQH----------------------------RNFYYRKFFDLICQMES  413 (625)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHH----------------------------HHHHHHHHHHHHHHHHH
Confidence            55555555555555555544332      111110                            01123334444444455


Q ss_pred             hhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhccchhHHHHHHHHHHHHhC
Q 007573          285 AEEALRLFSGMIKMDMQPDDATLVSVFTACSALQLLNEGRQSHVLVIRNG  334 (597)
Q Consensus       285 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~  334 (597)
                      .+.-+..|+.|.-.-.-|+..+...++++....+.++-..+++.+++..|
T Consensus       414 ~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~g  463 (625)
T KOG4422|consen  414 IDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYG  463 (625)
T ss_pred             HHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhh
Confidence            55555555555554455555555555555555555555555555555544

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.52  E-value=4.6e-14  Score=133.87  Aligned_cols=251  Identities=14%  Similarity=0.096  Sum_probs=100.4

Q ss_pred             HHHHHHHhcCCHHHHHHHHhhc-C----CCChhHHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhcc
Q 007573          243 AMITGFCKVGMLENARLLFERI-Q----PKDCVSFNAMIAGYAQNGVAEEALRLFSGMIKMDMQPDDATLVSVFTACSAL  317 (597)
Q Consensus       243 ~l~~~~~~~g~~~~A~~~~~~~-~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~  317 (597)
                      .+...+.+.|++++|++++++. .    +.|+..|..+.......++++.|+..++++...+.. +...+..++.. ...
T Consensus        13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~   90 (280)
T PF13429_consen   13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD   90 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence            3455555666666666666332 1    224444555555555566666666666666554322 22333333333 455


Q ss_pred             chhHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHhccC-----CCChhhHHHHHHHHHHcCCHHHHHHH
Q 007573          318 QLLNEGRQSHVLVIRNGFEANVSVCNAVITMYSRCGGILDSELAFRQIH-----SPNLVSWNTIIAAFAQHGHYEKALIF  392 (597)
Q Consensus       318 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~~  392 (597)
                      ++.++|..+.....+..  +++..+..++..+.+.++++++..+++.+.     +.+...|..+...+.+.|+.++|++.
T Consensus        91 ~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~  168 (280)
T PF13429_consen   91 GDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD  168 (280)
T ss_dssp             -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred             ccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence            66666666555444332  344555666677777777777777776643     35667788888888889999999999


Q ss_pred             HHHHHHCCCCCC-hHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC--C
Q 007573          393 FSQMGLNGFDPD-GITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMP--F  469 (597)
Q Consensus       393 ~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~  469 (597)
                      +++..+.  .|+ ......++..+...|+.+++.++++...+.  .+.++..+..+..+|...|+.++|...+++..  .
T Consensus       169 ~~~al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~--~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~  244 (280)
T PF13429_consen  169 YRKALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKA--APDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN  244 (280)
T ss_dssp             HHHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH---HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS
T ss_pred             HHHHHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHH--CcCHHHHHHHHHHHhcccccccccccccccccccc
Confidence            9988875  454 667778888888899999888888888764  24566777888889999999999999988865  3


Q ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 007573          470 EADTGVWGSLLAACVINLNVELGELAAKKMRE  501 (597)
Q Consensus       470 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  501 (597)
                      +.|+.....+..++...|+.++|.++.+++.+
T Consensus       245 p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~  276 (280)
T PF13429_consen  245 PDDPLWLLAYADALEQAGRKDEALRLRRQALR  276 (280)
T ss_dssp             TT-HHHHHHHHHHHT-----------------
T ss_pred             cccccccccccccccccccccccccccccccc
Confidence            34677788888889999999999998888765

>KOG4422 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.52  E-value=2.3e-10  Score=105.73  Aligned_cols=326  Identities=14%  Similarity=0.161  Sum_probs=171.6

Q ss_pred             CCchhHHHHHHHHHhCCChhHHHHHHHhcc----cCCcchHHHHHHHHHcCCChHHHHHHHhhcCC--CCCCchHHHHHH
Q 007573          172 RNVISYTAMLDGFMKKGEVDKARALSDYMS----FKNVVSWTVMITGYVKNERFCEARELFYRMPD--YDKNVFVVTAMI  245 (597)
Q Consensus       172 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~~~l~  245 (597)
                      +...++..||.++++--..+.|.+++++..    +.+..++|.+|.+-.-    ....+++.+|..  +.||..++|+++
T Consensus       205 KT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~----~~~K~Lv~EMisqkm~Pnl~TfNalL  280 (625)
T KOG4422|consen  205 KTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY----SVGKKLVAEMISQKMTPNLFTFNALL  280 (625)
T ss_pred             CCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh----hccHHHHHHHHHhhcCCchHhHHHHH
Confidence            334445555555555555555555554441    2234444444443321    112344444432  445555555555


Q ss_pred             HHHHhcCCHHHHHHHHh----hcC----CCChhHHHHHHHHHHHcCChhH-HHHHHHHhHH----CCCCC----CHHHHH
Q 007573          246 TGFCKVGMLENARLLFE----RIQ----PKDCVSFNAMIAGYAQNGVAEE-ALRLFSGMIK----MDMQP----DDATLV  308 (597)
Q Consensus       246 ~~~~~~g~~~~A~~~~~----~~~----~~~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~----~g~~p----~~~~~~  308 (597)
                      .+..+.|+++.|.+.+-    +|.    +|...+|..+|..+.+-+++.+ |..++.++..    +.++|    |...|.
T Consensus       281 ~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~  360 (625)
T KOG4422|consen  281 SCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQ  360 (625)
T ss_pred             HHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHH
Confidence            55555555544433332    222    2455556666666655555433 3333333332    12222    344566


Q ss_pred             HHHHHHhccchhHHHHHHHHHHHHhC----CCCc---ccHHHHHHHHHHhcCCHHHHHHHHhccCC----CChhhHHHHH
Q 007573          309 SVFTACSALQLLNEGRQSHVLVIRNG----FEAN---VSVCNAVITMYSRCGGILDSELAFRQIHS----PNLVSWNTII  377 (597)
Q Consensus       309 ~ll~~~~~~~~~~~a~~~~~~~~~~~----~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li  377 (597)
                      ..+..|.+..+.+.|.+++.......    +.++   ..-|..+..+.+.....+.-...++.|.+    |+..+-..++
T Consensus       361 ~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~l  440 (625)
T KOG4422|consen  361 SAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLL  440 (625)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHH
Confidence            67777777777777777766554221    1222   22355566666777777777777777663    5555555566


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccC--------------------cHHHHHH-HHHHhHHhcC
Q 007573          378 AAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAG--------------------KVNESMD-LFELMVKVYG  436 (597)
Q Consensus       378 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g--------------------~~~~a~~-~~~~~~~~~~  436 (597)
                      .+..-.|.++-.-+++..++..|..-+...-..++..+++..                    ++.++.+ .-.+++   .
T Consensus       441 rA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r---~  517 (625)
T KOG4422|consen  441 RALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQR---A  517 (625)
T ss_pred             HHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHH---h
Confidence            666666666666666666666554333333333333332222                    1111111 111122   2


Q ss_pred             CCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC-------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 007573          437 IIPSSEHYTCLVDILSRAGQLEKAWQITQGMP-------FEADTGVWGSLLAACVINLNVELGELAAKKMRELDP  504 (597)
Q Consensus       437 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p  504 (597)
                      .+......+.++-.+.|.|+.++|.+++.-+.       ..|......-|+..-...++...|..+++-+...+-
T Consensus       518 ~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~  592 (625)
T KOG4422|consen  518 QDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNL  592 (625)
T ss_pred             ccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCc
Confidence            33445566777778889999999988876542       334444455666677777788888888887765543

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.51  E-value=3.7e-10  Score=108.32  Aligned_cols=472  Identities=11%  Similarity=-0.021  Sum_probs=292.1

Q ss_pred             hHHHHHHHHHhcCChHHHHHHHhhcCC--CCcchHHHHHHHHHhCCChhHHHHHHhh--CCCCCcchHHHHHHHHHcCCC
Q 007573           52 VNNAKISALSRAGKISAARQLFDQMTT--KDVITWNAIITGYWQNGFLQESKNLFQS--MPVKNIVSWNCMIAGCIDNDR  127 (597)
Q Consensus        52 ~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~--~~~~~~~~~~~ll~~~~~~~~  127 (597)
                      -+..+++-+.-..++..|.-+=++.-.  .|+..--.+..++.-.|++++|..+...  +.+.|..+.......+.+..+
T Consensus        18 ~~~~~~r~~l~q~~y~~a~f~adkV~~l~~dp~d~~~~aq~l~~~~~y~ra~~lit~~~le~~d~~cryL~~~~l~~lk~   97 (611)
T KOG1173|consen   18 KYRRLVRDALMQHRYKTALFWADKVAGLTNDPADIYWLAQVLYLGRQYERAAHLITTYKLEKRDIACRYLAAKCLVKLKE   97 (611)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHhccCChHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHH
Confidence            445555555555666666665555432  4444455566777777777777766554  334577777777777777777


Q ss_pred             hHHHHHHHccCC-CCChhhHHHHHHHHHcCCChHHHHHHHccCCCCC--chhHHHHHHHHHhCCChhHHHHHHHhcccCC
Q 007573          128 IDDAFDYFQAMP-ERNTATYNAMISGFLKHGRLEEATRLFEQMPRRN--VISYTAMLDGFMKKGEVDKARALSDYMSFKN  204 (597)
Q Consensus       128 ~~~A~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~  204 (597)
                      +++|..++.... ..++.+|-.-=.  ...-..+.+.    ++...+  ...+-.-...|....+.++|...|.+....|
T Consensus        98 ~~~al~vl~~~~~~~~~f~yy~~~~--~~~l~~n~~~----~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D  171 (611)
T KOG1173|consen   98 WDQALLVLGRGHVETNPFSYYEKDA--ANTLELNSAG----EDLMINLESSICYLRGKVYVALDNREEARDKYKEALLAD  171 (611)
T ss_pred             HHHHHHHhcccchhhcchhhcchhh--hceeccCccc----ccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhcc
Confidence            777777776432 011111100000  0000001111    111011  1111112234555667777777777776666


Q ss_pred             cchHHHHHHHHHcC-CChHHHHHHHhhcCC---CCCCchHHHHHHHHHHhcCCHHHHHHHH--hhc--CCCChhHHHHHH
Q 007573          205 VVSWTVMITGYVKN-ERFCEARELFYRMPD---YDKNVFVVTAMITGFCKVGMLENARLLF--ERI--QPKDCVSFNAMI  276 (597)
Q Consensus       205 ~~~~~~ll~~~~~~-g~~~~a~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~--~~~--~~~~~~~~~~li  276 (597)
                      +..+..+...-... -...+-..++....-   ...+......+.....-...-++....-  ..+  .+.++.....-.
T Consensus       172 ~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~a  251 (611)
T KOG1173|consen  172 AKCFEAFEKLVSAHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKA  251 (611)
T ss_pred             hhhHHHHHHHHHHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHH
Confidence            65554433322111 011111222221100   0011111111111110000000000000  000  012444555556


Q ss_pred             HHHHHcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhccchhHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHH
Q 007573          277 AGYAQNGVAEEALRLFSGMIKMDMQPDDATLVSVFTACSALQLLNEGRQSHVLVIRNGFEANVSVCNAVITMYSRCGGIL  356 (597)
Q Consensus       277 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  356 (597)
                      .-+...+++.+..++.+...+.. ++....+..-|.++...|+..+...+-..+.+.- |....+|-++.-.|.-.|+..
T Consensus       252 d~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~YYl~i~k~s  329 (611)
T KOG1173|consen  252 DRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGCYYLMIGKYS  329 (611)
T ss_pred             HHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHHHHHHhcCcH
Confidence            66778899999999998887753 4455555555666677777666666655555543 667888999999999999999


Q ss_pred             HHHHHHhccCCC---ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHH
Q 007573          357 DSELAFRQIHSP---NLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMVK  433 (597)
Q Consensus       357 ~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~  433 (597)
                      +|++.|.+...-   =...|-....+|+..|..++|+..+...-+.= +-...-+..+..-|.+.+..+.|.++|.+.. 
T Consensus       330 eARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~-  407 (611)
T KOG1173|consen  330 EARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGMEYMRTNNLKLAEKFFKQAL-  407 (611)
T ss_pred             HHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHHhccHHHHHHHHHHHH-
Confidence            999999987633   34689999999999999999999988776531 1111223334556788899999999999876 


Q ss_pred             hcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC--------CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 007573          434 VYGIIPS-SEHYTCLVDILSRAGQLEKAWQITQGMP--------FEA-DTGVWGSLLAACVINLNVELGELAAKKMRELD  503 (597)
Q Consensus       434 ~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  503 (597)
                        ++.|+ +..++-+.-+....+.+.+|..+|+...        ..+ -..+++.|+.+|++.+.+++|+..+++++.+.
T Consensus       408 --ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~  485 (611)
T KOG1173|consen  408 --AIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLS  485 (611)
T ss_pred             --hcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcC
Confidence              66664 7788888888888999999999997653        111 24578999999999999999999999999999


Q ss_pred             CCCCchHHHHHHHHHhcCCcHHHHHHHHHHHh
Q 007573          504 PQNSAVYVMLSNLYAAAGMWRDVTRVRLLMKE  535 (597)
Q Consensus       504 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  535 (597)
                      |++..++..++-+|...|+++.|++.|.+...
T Consensus       486 ~k~~~~~asig~iy~llgnld~Aid~fhKaL~  517 (611)
T KOG1173|consen  486 PKDASTHASIGYIYHLLGNLDKAIDHFHKALA  517 (611)
T ss_pred             CCchhHHHHHHHHHHHhcChHHHHHHHHHHHh
Confidence            99999999999999999999999999988654

>TIGR00540 hemY_coli hemY protein

Probab=99.50  E-value=4e-11  Score=119.81  Aligned_cols=287  Identities=9%  Similarity=-0.041  Sum_probs=178.6

Q ss_pred             HcCCChHHHHHHHhhcCCCCCCchHH-HHHHHHHHhcCCHHHHHHHHhhcCC--CCh--hHHHHHHHHHHHcCChhHHHH
Q 007573          216 VKNERFCEARELFYRMPDYDKNVFVV-TAMITGFCKVGMLENARLLFERIQP--KDC--VSFNAMIAGYAQNGVAEEALR  290 (597)
Q Consensus       216 ~~~g~~~~a~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~--~~~--~~~~~li~~~~~~g~~~~A~~  290 (597)
                      ...|+++.|++.+....+..|+...+ -....++.+.|+.+.|.+.+.+..+  ++.  ...-.....+...|+++.|..
T Consensus        95 ~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~  174 (409)
T TIGR00540        95 LAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARH  174 (409)
T ss_pred             HhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHH
Confidence            35677777777777666655554333 3335556666777777777766432  222  222334566666777777777


Q ss_pred             HHHHhHHCCCCCCHHHHHHHHHHHhccchhHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHhccCCCCh
Q 007573          291 LFSGMIKMDMQPDDATLVSVFTACSALQLLNEGRQSHVLVIRNGFEANVSVCNAVITMYSRCGGILDSELAFRQIHSPNL  370 (597)
Q Consensus       291 ~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  370 (597)
                      .++.+.+.. +-+......+...+...|+++.+...+..+.+.+..+.......-.                        
T Consensus       175 ~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~------------------------  229 (409)
T TIGR00540       175 GVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQ------------------------  229 (409)
T ss_pred             HHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHH------------------------
Confidence            777776653 1133344455555566666666666666555554221111100000                        


Q ss_pred             hhHHHHHHHHHHcCCHHHHHHHHHHHHHCCC---CCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHH---H
Q 007573          371 VSWNTIIAAFAQHGHYEKALIFFSQMGLNGF---DPDGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEH---Y  444 (597)
Q Consensus       371 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~---~  444 (597)
                          ....+....+..+++.+.+..+.+...   +.+...+..+...+...|+.++|.+++++..+.   .|+...   .
T Consensus       230 ----~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~---~pd~~~~~~~  302 (409)
T TIGR00540       230 ----KAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK---LGDDRAISLP  302 (409)
T ss_pred             ----HHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh---CCCcccchhH
Confidence                111111222333334445555554321   137788888889999999999999999999874   334321   1


Q ss_pred             HHHHHHHhhcCCHHHHHHHHhhCC-CCCC-H--HHHHHHHHHHHhcCCHHHHHHHHH--HHHhcCCCCCchHHHHHHHHH
Q 007573          445 TCLVDILSRAGQLEKAWQITQGMP-FEAD-T--GVWGSLLAACVINLNVELGELAAK--KMRELDPQNSAVYVMLSNLYA  518 (597)
Q Consensus       445 ~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~--~~~~~l~~~~~~~g~~~~a~~~~~--~~~~~~p~~~~~~~~l~~~~~  518 (597)
                      ..........++.+.+.+.+++.. ..|+ +  ....+++..|.+.|++++|.+.|+  .+.+..|++.. +..++.++.
T Consensus       303 ~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~  381 (409)
T TIGR00540       303 LCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LAMAADAFD  381 (409)
T ss_pred             HHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHH
Confidence            111222234578888888887754 4454 4  567799999999999999999999  57778887655 679999999


Q ss_pred             hcCCcHHHHHHHHHHHh
Q 007573          519 AAGMWRDVTRVRLLMKE  535 (597)
Q Consensus       519 ~~g~~~~A~~~~~~~~~  535 (597)
                      +.|+.++|.++|++...
T Consensus       382 ~~g~~~~A~~~~~~~l~  398 (409)
T TIGR00540       382 QAGDKAEAAAMRQDSLG  398 (409)
T ss_pred             HcCCHHHHHHHHHHHHH
Confidence            99999999999998654

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=99.46  E-value=4.2e-10  Score=103.65  Aligned_cols=290  Identities=12%  Similarity=0.084  Sum_probs=200.8

Q ss_pred             HHHHHHHHh--CCChhHHHHHHHhcccC---CcchHHHHHHHHHcCCChHHHHHHHhhcCCC--CCCchHHHHHHHHHHh
Q 007573          178 TAMLDGFMK--KGEVDKARALSDYMSFK---NVVSWTVMITGYVKNERFCEARELFYRMPDY--DKNVFVVTAMITGFCK  250 (597)
Q Consensus       178 ~~li~~~~~--~g~~~~A~~~~~~m~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~l~~~~~~  250 (597)
                      ..+.++..+  .|++.+|+.+..+-.+.   ....|..-+++.-..|+.+.+-.++.++.+.  +++..+.-+.......
T Consensus        86 ~~~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~  165 (400)
T COG3071          86 KALNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLN  165 (400)
T ss_pred             HHHHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHh
Confidence            344444444  68899998888776433   2344555567777889999999999999886  4455667778888889


Q ss_pred             cCCHHHHHHHHhhc---CCCChhHHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhccchhHHHHHHH
Q 007573          251 VGMLENARLLFERI---QPKDCVSFNAMIAGYAQNGVAEEALRLFSGMIKMDMQPDDATLVSVFTACSALQLLNEGRQSH  327 (597)
Q Consensus       251 ~g~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~  327 (597)
                      .|+++.|..-.+++   .+.++........+|.+.|++.....++..|.+.|.--|...-.                   
T Consensus       166 ~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~-------------------  226 (400)
T COG3071         166 RRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAAR-------------------  226 (400)
T ss_pred             CCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHH-------------------
Confidence            99999988877664   45678889999999999999999999999999988655433210                   


Q ss_pred             HHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHhccC---CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 007573          328 VLVIRNGFEANVSVCNAVITMYSRCGGILDSELAFRQIH---SPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPD  404 (597)
Q Consensus       328 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~  404 (597)
                               ....+++.+++-....+..+.-...++..+   +.++..-.+++.-+.+.|+.++|.++..+..+.+..|+
T Consensus       227 ---------le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~  297 (400)
T COG3071         227 ---------LEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR  297 (400)
T ss_pred             ---------HHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh
Confidence                     011233333333333333444444555555   34566666777778888888888888888887776666


Q ss_pred             hHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCCCHHHHHHHHHHH
Q 007573          405 GITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMP-FEADTGVWGSLLAAC  483 (597)
Q Consensus       405 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~~~~  483 (597)
                          ....-.+.+.++...-.+..+...+.++..|  ..+.+|...|.+.+.+.+|...|+... ..|+..+|.-+..++
T Consensus       298 ----L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p--~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~  371 (400)
T COG3071         298 ----LCRLIPRLRPGDPEPLIKAAEKWLKQHPEDP--LLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADAL  371 (400)
T ss_pred             ----HHHHHhhcCCCCchHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHH
Confidence                2223345566777666666666666444433  667777777777788888777777544 677777777777777


Q ss_pred             HhcCCHHHHHHHHHHHHh
Q 007573          484 VINLNVELGELAAKKMRE  501 (597)
Q Consensus       484 ~~~g~~~~a~~~~~~~~~  501 (597)
                      .+.|+.++|.+..++.+.
T Consensus       372 ~~~g~~~~A~~~r~e~L~  389 (400)
T COG3071         372 DQLGEPEEAEQVRREALL  389 (400)
T ss_pred             HHcCChHHHHHHHHHHHH
Confidence            777777777777777764

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.45  E-value=2.4e-11  Score=112.25  Aligned_cols=197  Identities=12%  Similarity=0.045  Sum_probs=164.8

Q ss_pred             cccHHHHHHHHHHhcCCHHHHHHHHhccC---CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHH
Q 007573          338 NVSVCNAVITMYSRCGGILDSELAFRQIH---SPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSA  414 (597)
Q Consensus       338 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~  414 (597)
                      ....+..+...+...|++++|...+++..   +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+...
T Consensus        30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~  108 (234)
T TIGR02521        30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF  108 (234)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence            34567778888999999999999998765   4456788888899999999999999999998764 3456677788888


Q ss_pred             HhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHH
Q 007573          415 CGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMP-FEA-DTGVWGSLLAACVINLNVELG  492 (597)
Q Consensus       415 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a  492 (597)
                      +...|++++|.+.++.+.+..........+..+...+...|++++|.+.+++.. ..| +...+..+...+...|++++|
T Consensus       109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A  188 (234)
T TIGR02521       109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDA  188 (234)
T ss_pred             HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHH
Confidence            999999999999999988642222345677788899999999999999998865 334 466788888999999999999


Q ss_pred             HHHHHHHHhcCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHh
Q 007573          493 ELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRVRLLMKE  535 (597)
Q Consensus       493 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  535 (597)
                      ...++++++..|.++..+..++.++...|+.++|..+.+.+..
T Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~  231 (234)
T TIGR02521       189 RAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK  231 (234)
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence            9999999999888888888999999999999999999887765

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.44  E-value=1.3e-09  Score=100.42  Aligned_cols=270  Identities=10%  Similarity=-0.000  Sum_probs=203.5

Q ss_pred             CCCCchHHHHHHHHHHhcCCHHHHHHHHhhcCCCChh---HHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCHHHHHHH
Q 007573          234 YDKNVFVVTAMITGFCKVGMLENARLLFERIQPKDCV---SFNAMIAGYAQNGVAEEALRLFSGMIKMDMQPDDATLVSV  310 (597)
Q Consensus       234 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l  310 (597)
                      +.-|+....++...+...|+.++|+..|++...-|+.   ........+.+.|+.+....+...+.... +-+...|..-
T Consensus       228 lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~  306 (564)
T KOG1174|consen  228 LRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVH  306 (564)
T ss_pred             CCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhh
Confidence            5567888899999999999999999999987655443   33334455677888888888877776532 1223333333


Q ss_pred             HHHHhccchhHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHhccC---CCChhhHHHHHHHHHHcCCHH
Q 007573          311 FTACSALQLLNEGRQSHVLVIRNGFEANVSVCNAVITMYSRCGGILDSELAFRQIH---SPNLVSWNTIIAAFAQHGHYE  387 (597)
Q Consensus       311 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~  387 (597)
                      ........+.+.|..+-++.++.+ +.+...+-.-...+...|+.++|.-.|+...   +-+...|..++.+|...|++.
T Consensus       307 ~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~k  385 (564)
T KOG1174|consen  307 AQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFK  385 (564)
T ss_pred             hhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHH
Confidence            334446677888888777777665 3445555555677888899999999998765   567889999999999999999


Q ss_pred             HHHHHHHHHHHCCCCCChHHHHHHH-HHHh-ccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHH
Q 007573          388 KALIFFSQMGLNGFDPDGITFLSLL-SACG-HAGKVNESMDLFELMVKVYGIIPS-SEHYTCLVDILSRAGQLEKAWQIT  464 (597)
Q Consensus       388 ~A~~~~~~m~~~g~~p~~~~~~~ll-~~~~-~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~  464 (597)
                      +|..+-+..... ++.+..+.+.+. ..|. ....-++|.++++...   .+.|+ ...-+.+...+.+.|+.+++..++
T Consensus       386 EA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L---~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LL  461 (564)
T KOG1174|consen  386 EANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSL---KINPIYTPAVNLIAELCQVEGPTKDIIKLL  461 (564)
T ss_pred             HHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhh---ccCCccHHHHHHHHHHHHhhCccchHHHHH
Confidence            999887776643 345566666553 3332 3344578888888765   55676 556778889999999999999999


Q ss_pred             hhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch
Q 007573          465 QGMP-FEADTGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAV  509 (597)
Q Consensus       465 ~~~~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~  509 (597)
                      ++.. ..||...-+.|.......+.+.+|...|..+++++|++..+
T Consensus       462 e~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~s  507 (564)
T KOG1174|consen  462 EKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRT  507 (564)
T ss_pred             HHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHH
Confidence            8865 78899999999999999999999999999999999997653

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.44  E-value=9.1e-10  Score=103.68  Aligned_cols=220  Identities=10%  Similarity=0.035  Sum_probs=173.4

Q ss_pred             HHHHcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhccchhHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHH
Q 007573          278 GYAQNGVAEEALRLFSGMIKMDMQPDDATLVSVFTACSALQLLNEGRQSHVLVIRNGFEANVSVCNAVITMYSRCGGILD  357 (597)
Q Consensus       278 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  357 (597)
                      .+.-.|+.-.|..-|+..+.....++.. |.-+..++....+.++..+.|..+.+.+ +.++.+|..-..++.-.+++++
T Consensus       335 F~fL~g~~~~a~~d~~~~I~l~~~~~~l-yI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~  412 (606)
T KOG0547|consen  335 FHFLKGDSLGAQEDFDAAIKLDPAFNSL-YIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEE  412 (606)
T ss_pred             hhhhcCCchhhhhhHHHHHhcCcccchH-HHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHH
Confidence            3455788889999999888765444432 6667778889999999999999998887 6678888888888999999999


Q ss_pred             HHHHHhccCC---CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHh
Q 007573          358 SELAFRQIHS---PNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMVKV  434 (597)
Q Consensus       358 A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~  434 (597)
                      |..-|++...   .+...|-.+.-+..+.+++++++..|++.++. ++.-+..|+.....+...++++.|.+.|+..+.-
T Consensus       413 A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L  491 (606)
T KOG0547|consen  413 AIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL  491 (606)
T ss_pred             HHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh
Confidence            9999998873   44556666666777889999999999999875 4445788999999999999999999999988753


Q ss_pred             cCCCCC---------hHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 007573          435 YGIIPS---------SEHYTCLVDILSRAGQLEKAWQITQGMP-FEAD-TGVWGSLLAACVINLNVELGELAAKKMRELD  503 (597)
Q Consensus       435 ~~~~p~---------~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  503 (597)
                         .|+         +.+--.++-.- -.+++..|..++++.. ..|. ...+..|...-.+.|+.++|+++|++...+-
T Consensus       492 ---E~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lA  567 (606)
T KOG0547|consen  492 ---EPREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLA  567 (606)
T ss_pred             ---ccccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence               333         22222333222 3489999999998876 6665 4589999999999999999999999988664


Q ss_pred             C
Q 007573          504 P  504 (597)
Q Consensus       504 p  504 (597)
                      .
T Consensus       568 r  568 (606)
T KOG0547|consen  568 R  568 (606)
T ss_pred             H
Confidence            3

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.42  E-value=2.9e-10  Score=101.46  Aligned_cols=112  Identities=13%  Similarity=0.186  Sum_probs=62.3

Q ss_pred             CCChhHHHHHHHhcccCCcchH---HHHHHHHHcCCChHHHHHHHhhcCCCCCCc------hHHHHHHHHHHhcCCHHHH
Q 007573          187 KGEVDKARALSDYMSFKNVVSW---TVMITGYVKNERFCEARELFYRMPDYDKNV------FVVTAMITGFCKVGMLENA  257 (597)
Q Consensus       187 ~g~~~~A~~~~~~m~~~~~~~~---~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~A  257 (597)
                      ..+.++|.++|-+|.+.|..|+   -+|.+.|-+.|..+.|+++++.+.+. ||.      .+...|..-|...|-++.|
T Consensus        48 s~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s-pdlT~~qr~lAl~qL~~Dym~aGl~DRA  126 (389)
T COG2956          48 SNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES-PDLTFEQRLLALQQLGRDYMAAGLLDRA  126 (389)
T ss_pred             hcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence            3566777777777755554443   34556666666666666666665541 221      1233445555566666666


Q ss_pred             HHHHhhcCCCCh---hHHHHHHHHHHHcCChhHHHHHHHHhHHCC
Q 007573          258 RLLFERIQPKDC---VSFNAMIAGYAQNGVAEEALRLFSGMIKMD  299 (597)
Q Consensus       258 ~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g  299 (597)
                      +.+|..+.+.+.   .+.-.|+..|-...+|++|+++-+++.+.+
T Consensus       127 E~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~  171 (389)
T COG2956         127 EDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLG  171 (389)
T ss_pred             HHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcC
Confidence            666666554222   244455555666666666666655555543

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.41  E-value=1.4e-09  Score=104.41  Aligned_cols=462  Identities=12%  Similarity=0.007  Sum_probs=263.1

Q ss_pred             CCcchHHHHHHHHHhcCChHHHHHHHhh--cCCCCcchHHHHHHHHHhCCChhHHHHHHhhCCCC-CcchHHHHHHHHHc
Q 007573           48 QYVFVNNAKISALSRAGKISAARQLFDQ--MTTKDVITWNAIITGYWQNGFLQESKNLFQSMPVK-NIVSWNCMIAGCID  124 (597)
Q Consensus        48 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~ll~~~~~  124 (597)
                      .|+.----+.++|.-.|++..|..+...  +.+.|..+.......+.+..++++|+.++...... ++..+..-=.+  .
T Consensus        47 ~dp~d~~~~aq~l~~~~~y~ra~~lit~~~le~~d~~cryL~~~~l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~~--~  124 (611)
T KOG1173|consen   47 NDPADIYWLAQVLYLGRQYERAAHLITTYKLEKRDIACRYLAAKCLVKLKEWDQALLVLGRGHVETNPFSYYEKDAA--N  124 (611)
T ss_pred             CChHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhcchhhcchhhh--c
Confidence            3444444567888888888888877664  34577778888888899999999999999855321 22111110000  0


Q ss_pred             CCChHHHHHHHccCCCCChh--hHHHHHHHHHcCCChHHHHHHHccCCCCCchhHHHHHHHHHhCC-ChhHHHHHHHhc-
Q 007573          125 NDRIDDAFDYFQAMPERNTA--TYNAMISGFLKHGRLEEATRLFEQMPRRNVISYTAMLDGFMKKG-EVDKARALSDYM-  200 (597)
Q Consensus       125 ~~~~~~A~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m-  200 (597)
                      .-..+.+.    +..+.+..  .+-.-...|....+.++|+..|.+....|+..+..+...-...= -..+-..++... 
T Consensus       125 ~l~~n~~~----~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~  200 (611)
T KOG1173|consen  125 TLELNSAG----EDLMINLESSICYLRGKVYVALDNREEARDKYKEALLADAKCFEAFEKLVSAHMLTAQEEFELLESLD  200 (611)
T ss_pred             eeccCccc----ccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhcchhhHHHHHHHHHHHhcchhHHHHHHhccc
Confidence            00000011    00011111  11111233444455566666665555444443333222111100 001112222211 


Q ss_pred             ----ccCCcchHHHHHHHHH-cCCChHHHHHHH--hhcCCCCCCchHHHHHHHHHHhcCCHHHHHHHHhhcCCCCh---h
Q 007573          201 ----SFKNVVSWTVMITGYV-KNERFCEARELF--YRMPDYDKNVFVVTAMITGFCKVGMLENARLLFERIQPKDC---V  270 (597)
Q Consensus       201 ----~~~~~~~~~~ll~~~~-~~g~~~~a~~~~--~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~  270 (597)
                          ...++.....+..... +..+. +....-  ..+.+...+..+.....+-+-..+++.+..++++.+.+.|+   .
T Consensus       201 ~a~~~~ed~e~l~~lyel~~~k~~n~-~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~  279 (611)
T KOG1173|consen  201 LAMLTKEDVERLEILYELKLCKNRNE-ESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLP  279 (611)
T ss_pred             HHhhhhhHHHHHHHHHHhhhhhhccc-cccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcc
Confidence                0111111111111110 00000 000000  11111223444455555666666777777777776655433   3


Q ss_pred             HHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhccchhHHHHHHHHHHHHhCCCCcccHHHHHHHHHH
Q 007573          271 SFNAMIAGYAQNGVAEEALRLFSGMIKMDMQPDDATLVSVFTACSALQLLNEGRQSHVLVIRNGFEANVSVCNAVITMYS  350 (597)
Q Consensus       271 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  350 (597)
                      .+..-|..+...|+..+-..+=.+|.+. .+-...+|-++..-|...|...+|++.+.+....+ +.-...|-.....|+
T Consensus       280 ~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa  357 (611)
T KOG1173|consen  280 CLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFA  357 (611)
T ss_pred             hHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhh
Confidence            4455555666667666666555556553 13344566666666666677777777777665443 223445667777777


Q ss_pred             hcCCHHHHHHHHhccC---CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHH
Q 007573          351 RCGGILDSELAFRQIH---SPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDL  427 (597)
Q Consensus       351 ~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~  427 (597)
                      -.|.-+.|...+....   +.....+--+.--|.+.++.+-|.++|.+...- .+-|+...+-+.-.....+.+.+|..+
T Consensus       358 ~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai-~P~Dplv~~Elgvvay~~~~y~~A~~~  436 (611)
T KOG1173|consen  358 GEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAI-APSDPLVLHELGVVAYTYEEYPEALKY  436 (611)
T ss_pred             hcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhc-CCCcchhhhhhhheeehHhhhHHHHHH
Confidence            7777777777665443   222222333444577788999999999887643 234566677776666678889999999


Q ss_pred             HHHhHHhc-CCC---C-ChHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007573          428 FELMVKVY-GII---P-SSEHYTCLVDILSRAGQLEKAWQITQGMP--FEADTGVWGSLLAACVINLNVELGELAAKKMR  500 (597)
Q Consensus       428 ~~~~~~~~-~~~---p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  500 (597)
                      |+.....- .+.   + -..+++.|..+|.+.+++++|+..+++..  .+.+..++.+++-.|...|+++.|+..|.+++
T Consensus       437 f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL  516 (611)
T KOG1173|consen  437 FQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKAL  516 (611)
T ss_pred             HHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence            88776321 111   1 23468889999999999999999999865  45578899999999999999999999999999


Q ss_pred             hcCCCCCchHHHHHHHHHh
Q 007573          501 ELDPQNSAVYVMLSNLYAA  519 (597)
Q Consensus       501 ~~~p~~~~~~~~l~~~~~~  519 (597)
                      -+.|++..+-..|..+...
T Consensus       517 ~l~p~n~~~~~lL~~aie~  535 (611)
T KOG1173|consen  517 ALKPDNIFISELLKLAIED  535 (611)
T ss_pred             hcCCccHHHHHHHHHHHHh
Confidence            9999997666666554433

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.41  E-value=3.9e-10  Score=100.69  Aligned_cols=280  Identities=11%  Similarity=0.095  Sum_probs=186.3

Q ss_pred             CCChHHHHHHHhhcCCCCC-CchHHHHHHHHHHhcCCHHHHHHHHhhcCC-CCh------hHHHHHHHHHHHcCChhHHH
Q 007573          218 NERFCEARELFYRMPDYDK-NVFVVTAMITGFCKVGMLENARLLFERIQP-KDC------VSFNAMIAGYAQNGVAEEAL  289 (597)
Q Consensus       218 ~g~~~~a~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~------~~~~~li~~~~~~g~~~~A~  289 (597)
                      +.+.++|...|-+|.+.+| +..+.-+|.+.|-+.|.++.|+++-+.+.+ ||.      .+.-.|..-|...|-+|.|.
T Consensus        48 s~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE  127 (389)
T COG2956          48 SNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAE  127 (389)
T ss_pred             hcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHH
Confidence            4567777777777777554 334556777778888888888887777654 332      23445666677778888888


Q ss_pred             HHHHHhHHCCCCCCHHHHHHHHHHHhccchhHHHHHHHHHHHHhCCCCc----ccHHHHHHHHHHhcCCHHHHHHHHhcc
Q 007573          290 RLFSGMIKMDMQPDDATLVSVFTACSALQLLNEGRQSHVLVIRNGFEAN----VSVCNAVITMYSRCGGILDSELAFRQI  365 (597)
Q Consensus       290 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~  365 (597)
                      .+|..+.+.| .--......++..|-...+|++|..+-..+.+.+-.+.    ...|.-|...+....+.+.|...+.+.
T Consensus       128 ~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kA  206 (389)
T COG2956         128 DIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKA  206 (389)
T ss_pred             HHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence            8887777644 23344566677777777888888877777776654443    234666777777777788888887776


Q ss_pred             CC---CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChH
Q 007573          366 HS---PNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSE  442 (597)
Q Consensus       366 ~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~  442 (597)
                      ..   ..+..--.+...+...|++.+|++.++...+.+..--..+...+..+|.+.|+.+++...+..+.+.   .+...
T Consensus       207 lqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~---~~g~~  283 (389)
T COG2956         207 LQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET---NTGAD  283 (389)
T ss_pred             HhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc---cCCcc
Confidence            63   2233344455667788888888888888887643333556777888888888888888888887754   33444


Q ss_pred             HHHHHHHHHhhcCCHHHHHHH-HhhCCCCCCHHHHHHHHHHHH---hcCCHHHHHHHHHHHHh
Q 007573          443 HYTCLVDILSRAGQLEKAWQI-TQGMPFEADTGVWGSLLAACV---INLNVELGELAAKKMRE  501 (597)
Q Consensus       443 ~~~~l~~~~~~~g~~~~A~~~-~~~~~~~p~~~~~~~l~~~~~---~~g~~~~a~~~~~~~~~  501 (597)
                      .-..+.+.-....-.+.|..+ .+++..+|+...+..|+..-.   ..|...+....++.|+.
T Consensus       284 ~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvg  346 (389)
T COG2956         284 AELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVG  346 (389)
T ss_pred             HHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhccccccchhhhHHHHHHHHH
Confidence            444455544444445555544 455667888888888887743   23445666666666664

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.39  E-value=2e-09  Score=103.92  Aligned_cols=450  Identities=10%  Similarity=0.102  Sum_probs=239.4

Q ss_pred             HHHHHhcCChHHHHHHHhhcCC--CC-cchHHHHHHHHHhCCChhHHHHHHhhCCCCCcchHHHHHHHHH--cCCChHHH
Q 007573           57 ISALSRAGKISAARQLFDQMTT--KD-VITWNAIITGYWQNGFLQESKNLFQSMPVKNIVSWNCMIAGCI--DNDRIDDA  131 (597)
Q Consensus        57 ~~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~--~~~~~~~A  131 (597)
                      ++.+...|++++|.+..+++..  || ...+..-+-++.+.+.+++|+.+.+.-..........+=.+|+  +.+..++|
T Consensus        19 ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrlnk~Dea   98 (652)
T KOG2376|consen   19 LNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRLNKLDEA   98 (652)
T ss_pred             HHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHcccHHHH
Confidence            5666778888888888887765  33 3345555666778888888886666554321111111334444  77778888


Q ss_pred             HHHHccCCCCChhhHHHHHHHHHcCCChHHHHHHHccCCCCCchhHHHHHHHHHh-CCChhHHHHHHHhcccCCcchHHH
Q 007573          132 FDYFQAMPERNTATYNAMISGFLKHGRLEEATRLFEQMPRRNVISYTAMLDGFMK-KGEVDKARALSDYMSFKNVVSWTV  210 (597)
Q Consensus       132 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~~~~~~~~  210 (597)
                      ...++...+.+..+...-...+-+.|++++|..+|+.+.+.+...+...+++-+. .+-.-.+- +.+........+|..
T Consensus        99 lk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~-~~q~v~~v~e~syel  177 (652)
T KOG2376|consen   99 LKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQ-LLQSVPEVPEDSYEL  177 (652)
T ss_pred             HHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHH-HHHhccCCCcchHHH
Confidence            8877755555555555556677777888888888877765544444333322111 11111111 233332222333333


Q ss_pred             HH---HHHHcCCChHHHHHHHhhcCCCCCCchHHHHHHHHHHhcCCHHHHHHHHhhcCCCCh-hHHHHHHHHHHHcCChh
Q 007573          211 MI---TGYVKNERFCEARELFYRMPDYDKNVFVVTAMITGFCKVGMLENARLLFERIQPKDC-VSFNAMIAGYAQNGVAE  286 (597)
Q Consensus       211 ll---~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~li~~~~~~g~~~  286 (597)
                      +.   -.+...|++.+|+++++...++..         ..+. .++..  .   +.+ +.+. ..--.|...+-..|+..
T Consensus       178 ~yN~Ac~~i~~gky~qA~elL~kA~~~~~---------e~l~-~~d~~--e---Eei-e~el~~IrvQlayVlQ~~Gqt~  241 (652)
T KOG2376|consen  178 LYNTACILIENGKYNQAIELLEKALRICR---------EKLE-DEDTN--E---EEI-EEELNPIRVQLAYVLQLQGQTA  241 (652)
T ss_pred             HHHHHHHHHhcccHHHHHHHHHHHHHHHH---------Hhhc-ccccc--h---hhH-HHHHHHHHHHHHHHHHHhcchH
Confidence            32   334566777777777766532000         0000 00000  0   000 0000 11223344455566666


Q ss_pred             HHHHHHHHhHHCCCCCCHHHHHHHH---HHHhccch-hH-------------HHHHHHHHHHHhCCCCcccHHHHHHHHH
Q 007573          287 EALRLFSGMIKMDMQPDDATLVSVF---TACSALQL-LN-------------EGRQSHVLVIRNGFEANVSVCNAVITMY  349 (597)
Q Consensus       287 ~A~~~~~~m~~~g~~p~~~~~~~ll---~~~~~~~~-~~-------------~a~~~~~~~~~~~~~~~~~~~~~l~~~~  349 (597)
                      +|.++|...++.. .+|........   .+.....+ ++             .+......+.... ......-+.++.+|
T Consensus       242 ea~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~q-k~~i~~N~~lL~l~  319 (652)
T KOG2376|consen  242 EASSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQ-KQAIYRNNALLALF  319 (652)
T ss_pred             HHHHHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence            6666666666553 23332211111   11111110 01             0000111111000 01111123334444


Q ss_pred             HhcCCHHHHHHHHhccCCCC-hhhHHHHHHHH--HHcCCHHHHHHHHHHHHHCCCCCC--hHHHHHHHHHHhccCcHHHH
Q 007573          350 SRCGGILDSELAFRQIHSPN-LVSWNTIIAAF--AQHGHYEKALIFFSQMGLNGFDPD--GITFLSLLSACGHAGKVNES  424 (597)
Q Consensus       350 ~~~g~~~~A~~~~~~~~~~~-~~~~~~li~~~--~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~g~~~~a  424 (597)
                      .  +..+.+.+....+.... ...+.+++...  ++...+.+|.+++...-+.  .|.  .......+......|+++.|
T Consensus       320 t--nk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~~s~~v~L~~aQl~is~gn~~~A  395 (652)
T KOG2376|consen  320 T--NKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADG--HPEKSKVVLLLRAQLKISQGNPEVA  395 (652)
T ss_pred             h--hhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCchhHHHHHHHHHHHHhcCCHHHH
Confidence            3  55667777777666322 23344444332  2233577888888877654  343  34555566777889999999


Q ss_pred             HHHHH--------HhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC-----CCCCHH----HHHHHHHHHHhcC
Q 007573          425 MDLFE--------LMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMP-----FEADTG----VWGSLLAACVINL  487 (597)
Q Consensus       425 ~~~~~--------~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~p~~~----~~~~l~~~~~~~g  487 (597)
                      .+++.        .+.+   +...+.+-.+++..+.+.++.+.|..++.+..     ..+...    ++.-+...-.+.|
T Consensus       396 ~~il~~~~~~~~ss~~~---~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G  472 (652)
T KOG2376|consen  396 LEILSLFLESWKSSILE---AKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHG  472 (652)
T ss_pred             HHHHHHHhhhhhhhhhh---hccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcC
Confidence            99988        4432   23345566677888888887666666665443     112222    3333444455779


Q ss_pred             CHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcHHHHHHHHHH
Q 007573          488 NVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRVRLLM  533 (597)
Q Consensus       488 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  533 (597)
                      +-++|...++++.+.+|++..+...+.-+|+.. +.+.|..+-+.+
T Consensus       473 ~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~-d~eka~~l~k~L  517 (652)
T KOG2376|consen  473 NEEEASSLLEELVKFNPNDTDLLVQLVTAYARL-DPEKAESLSKKL  517 (652)
T ss_pred             chHHHHHHHHHHHHhCCchHHHHHHHHHHHHhc-CHHHHHHHhhcC
Confidence            999999999999999999999999999888876 556666654443

>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]

Probab=99.38  E-value=2.2e-09  Score=108.19  Aligned_cols=461  Identities=12%  Similarity=0.072  Sum_probs=241.6

Q ss_pred             CCCcchHHHHHHHHHhcCChHHHHHHHhhcCCCC----cchHHHHHHHHHhCCChhHHHHHHhhCCCCCcchHHHHHHHH
Q 007573           47 TQYVFVNNAKISALSRAGKISAARQLFDQMTTKD----VITWNAIITGYWQNGFLQESKNLFQSMPVKNIVSWNCMIAGC  122 (597)
Q Consensus        47 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~  122 (597)
                      .|+.++|.++|.-|+..|+++.|- +|.-|..++    -..++.++.+..+.++.+.+.       +|.+.+|..|..+|
T Consensus        22 ~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~aDtyt~Ll~ay   93 (1088)
T KOG4318|consen   22 LPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPLADTYTNLLKAY   93 (1088)
T ss_pred             CCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCchhHHHHHHHHH
Confidence            566677777777777777777777 666665422    234666666666666655443       55666777777777


Q ss_pred             HcCCChHHHHHHHccCCCCChhhHHHHHHHHHcCCChHHHHHHHccCC-CC-CchhHHHHHHHHHhCCChhHHHHHHHhc
Q 007573          123 IDNDRIDDAFDYFQAMPERNTATYNAMISGFLKHGRLEEATRLFEQMP-RR-NVISYTAMLDGFMKKGEVDKARALSDYM  200 (597)
Q Consensus       123 ~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m  200 (597)
                      ...||+.. .+..++       -...+...+...|--..-..++..+. .| ....-...+......|-++.++.++..+
T Consensus        94 r~hGDli~-fe~veq-------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~  165 (1088)
T KOG4318|consen   94 RIHGDLIL-FEVVEQ-------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKV  165 (1088)
T ss_pred             HhccchHH-HHHHHH-------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            77776654 111111       12223344445555444444444432 11 1111223444555667777777777666


Q ss_pred             ccCC-cchHHHHHHHHHcC-CChHHHHHHHhhcCCCCCCchHHHHHHHHHHhcCCHHHHHHHHhhcCCCC----hhHHHH
Q 007573          201 SFKN-VVSWTVMITGYVKN-ERFCEARELFYRMPDYDKNVFVVTAMITGFCKVGMLENARLLFERIQPKD----CVSFNA  274 (597)
Q Consensus       201 ~~~~-~~~~~~ll~~~~~~-g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~  274 (597)
                      +.-. ..+...+++-+... ..+++-........+ .|+..++..++..-...|+++.|..++..|.++.    ..-|-.
T Consensus       166 Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e-~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwp  244 (1088)
T KOG4318|consen  166 PVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVE-APTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWP  244 (1088)
T ss_pred             CcccccchHHHHHHHhccCCchHHHHHHHHHHhhc-CCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchh
Confidence            3211 01111124433332 234444444333333 5777888888888888888888888888877642    222223


Q ss_pred             HHHHHHHcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhccchhHHHHHHHHHHHHhCCCCccc----HHHHHHHHHH
Q 007573          275 MIAGYAQNGVAEEALRLFSGMIKMDMQPDDATLVSVFTACSALQLLNEGRQSHVLVIRNGFEANVS----VCNAVITMYS  350 (597)
Q Consensus       275 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~  350 (597)
                      |+-+   .++...+..+++-|...|+.|+..|+...+..+...|....+.        .|.+.+..    ++..+..+..
T Consensus       245 Ll~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~--------e~sq~~hg~tAavrsaa~rg~~  313 (1088)
T KOG4318|consen  245 LLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGE--------EGSQLAHGFTAAVRSAACRGLL  313 (1088)
T ss_pred             hhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcc--------cccchhhhhhHHHHHHHhcccH
Confidence            3333   6677777777888888888888888877777766655432222        12222222    2222222211


Q ss_pred             hcCCHHHH--HHHHhccC-------CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCC--CCCC-hHHHHHHHH-----
Q 007573          351 RCGGILDS--ELAFRQIH-------SPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNG--FDPD-GITFLSLLS-----  413 (597)
Q Consensus       351 ~~g~~~~A--~~~~~~~~-------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~-~~~~~~ll~-----  413 (597)
                      ...+++.-  .-+....+       ......|...+... .+|..++..++-..|..-.  ..++ ...|..++.     
T Consensus       314 a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~l~-hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyFrr  392 (1088)
T KOG4318|consen  314 ANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEKLR-HQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYFRR  392 (1088)
T ss_pred             hHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHHHH-HcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHHHH
Confidence            11111111  11111111       12224454443322 2344333333333322100  0010 011111111     


Q ss_pred             ---------------------------------------------------------------------------HHhcc
Q 007573          414 ---------------------------------------------------------------------------ACGHA  418 (597)
Q Consensus       414 ---------------------------------------------------------------------------~~~~~  418 (597)
                                                                                                 .|.+.
T Consensus       393 ~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~se  472 (1088)
T KOG4318|consen  393 IERHICSRIYYAGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLNSE  472 (1088)
T ss_pred             HHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHHHH
Confidence                                                                                       11111


Q ss_pred             CcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC-----CCCCHHHHHHHHHHHHhcCCHHHHH
Q 007573          419 GKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMP-----FEADTGVWGSLLAACVINLNVELGE  493 (597)
Q Consensus       419 g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~p~~~~~~~l~~~~~~~g~~~~a~  493 (597)
                      -+..++...-+.. +..-   =+..|..|++.+....+.+.|..+.++..     ..-|..-+..+.+...+.+....+.
T Consensus       473 ~n~lK~l~~~eky-e~~l---f~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~  548 (1088)
T KOG4318|consen  473 YNKLKILCDEEKY-EDLL---FAGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLS  548 (1088)
T ss_pred             HHHHHHHHHHHHH-HHHH---hhhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHH
Confidence            1111111110000 0000   01456778888888888888888888776     2234445777778888888888888


Q ss_pred             HHHHHHHhcC---CCCCchHHHHHHHHHhcCCcHHHHHHHHHHHhCCCcc
Q 007573          494 LAAKKMRELD---PQNSAVYVMLSNLYAAAGMWRDVTRVRLLMKEQGVTK  540 (597)
Q Consensus       494 ~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~  540 (597)
                      .++.++.+.-   |.-..+...+.+.....|+.+.-.++.+-+...|+.-
T Consensus       549 tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~e  598 (1088)
T KOG4318|consen  549 TILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSE  598 (1088)
T ss_pred             HHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhh
Confidence            8888887632   2224556677777888899988888888888877644

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=99.35  E-value=7.6e-08  Score=93.98  Aligned_cols=435  Identities=11%  Similarity=0.151  Sum_probs=263.6

Q ss_pred             hHHHHHHHHHhCCChhHHHHHHhhCCCC-----CcchHHHHHHHHHcCCChHHHHHHHccCCCCChhhHHHHHHHHHcCC
Q 007573           83 TWNAIITGYWQNGFLQESKNLFQSMPVK-----NIVSWNCMIAGCIDNDRIDDAFDYFQAMPERNTATYNAMISGFLKHG  157 (597)
Q Consensus        83 ~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g  157 (597)
                      .|-..+..+..+|+.......|++....     ....|...+......+-.+-+..++++.++-++..-+-.+..+++.+
T Consensus       104 Iwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~eeyie~L~~~d  183 (835)
T KOG2047|consen  104 IWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREEYIEYLAKSD  183 (835)
T ss_pred             HHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcc
Confidence            6777777777888888888877776532     55667778887777777778888888888777777777888888888


Q ss_pred             ChHHHHHHHccCCCC----------CchhHHHHHHHHHhCCCh---hHHHHHHHhccc--CCc--chHHHHHHHHHcCCC
Q 007573          158 RLEEATRLFEQMPRR----------NVISYTAMLDGFMKKGEV---DKARALSDYMSF--KNV--VSWTVMITGYVKNER  220 (597)
Q Consensus       158 ~~~~A~~~~~~~~~~----------~~~~~~~li~~~~~~g~~---~~A~~~~~~m~~--~~~--~~~~~ll~~~~~~g~  220 (597)
                      ++++|.+.+......          +-..|+.+-+..+++.+.   -....+++.+..  +|.  ..|.+|.+-|.+.|.
T Consensus       184 ~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~  263 (835)
T KOG2047|consen  184 RLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGL  263 (835)
T ss_pred             chHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhh
Confidence            888888888776532          333466555555554332   223334444422  232  457777777777777


Q ss_pred             hHHHHHHHhhcCCCCCCchHHHHHHHHHHhcCCHHHHHHHH-h---hcCCCChhHHHHHHHHHHHcCChhHHHHHHHHhH
Q 007573          221 FCEARELFYRMPDYDKNVFVVTAMITGFCKVGMLENARLLF-E---RIQPKDCVSFNAMIAGYAQNGVAEEALRLFSGMI  296 (597)
Q Consensus       221 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~-~---~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~  296 (597)
                      ++.|..+|++....-.++.-+..+.+.|++-..-.-+..+= .   ...+.+...+.             -.+.-|+.+.
T Consensus       264 ~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~-------------~~~a~~e~lm  330 (835)
T KOG2047|consen  264 FEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLE-------------LHMARFESLM  330 (835)
T ss_pred             hHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHH-------------HHHHHHHHHH
Confidence            77777777777664444555555555555432211111111 0   00001111111             1122222222


Q ss_pred             HCC----------CCC-CHHHHHHHHHHHhccchhHHHHHHHHHHHHhCCCC------cccHHHHHHHHHHhcCCHHHHH
Q 007573          297 KMD----------MQP-DDATLVSVFTACSALQLLNEGRQSHVLVIRNGFEA------NVSVCNAVITMYSRCGGILDSE  359 (597)
Q Consensus       297 ~~g----------~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~  359 (597)
                      ..+          ..| +..+|..-+.  ...|+..+-...+.++++.- .|      -...|..+.+.|-..|+++.|+
T Consensus       331 ~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~v-dP~ka~Gs~~~Lw~~faklYe~~~~l~~aR  407 (835)
T KOG2047|consen  331 NRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKTV-DPKKAVGSPGTLWVEFAKLYENNGDLDDAR  407 (835)
T ss_pred             hccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHcc-CcccCCCChhhHHHHHHHHHHhcCcHHHHH
Confidence            111          011 2222222221  23344555556666665542 22      1245778888888999999999


Q ss_pred             HHHhccCCCCh-------hhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC----------C-------ChHHHHHHHHHH
Q 007573          360 LAFRQIHSPNL-------VSWNTIIAAFAQHGHYEKALIFFSQMGLNGFD----------P-------DGITFLSLLSAC  415 (597)
Q Consensus       360 ~~~~~~~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~----------p-------~~~~~~~ll~~~  415 (597)
                      .+|++...-+-       .+|..-...-.++.+++.|++++++.....-.          |       +...|...+..-
T Consensus       408 vifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~Dle  487 (835)
T KOG2047|consen  408 VIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLE  487 (835)
T ss_pred             HHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHH
Confidence            99988774322       24555555556778888898888776542111          1       112344445555


Q ss_pred             hccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC--C-CCCH-HHHHHHHHHHHh---cCC
Q 007573          416 GHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMP--F-EADT-GVWGSLLAACVI---NLN  488 (597)
Q Consensus       416 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~-~p~~-~~~~~l~~~~~~---~g~  488 (597)
                      ...|-++....+++.+..-.-..|.  ........+....-++++.+++++-.  + -|+. ..|+..+.-+.+   ...
T Consensus       488 Es~gtfestk~vYdriidLriaTPq--ii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~k  565 (835)
T KOG2047|consen  488 ESLGTFESTKAVYDRIIDLRIATPQ--IIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTK  565 (835)
T ss_pred             HHhccHHHHHHHHHHHHHHhcCCHH--HHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCC
Confidence            5667888888889888875333333  22233344566778899999998855  3 3454 478887766443   236


Q ss_pred             HHHHHHHHHHHHhcCCCC--CchHHHHHHHHHhcCCcHHHHHHHHHHHh
Q 007573          489 VELGELAAKKMRELDPQN--SAVYVMLSNLYAAAGMWRDVTRVRLLMKE  535 (597)
Q Consensus       489 ~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  535 (597)
                      .+.|..+|+++++.-|+.  ...|...+..-.+-|....|++++++...
T Consensus       566 lEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~  614 (835)
T KOG2047|consen  566 LERARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS  614 (835)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence            899999999999977754  44566666677778888899999988653

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=99.35  E-value=3.8e-09  Score=105.13  Aligned_cols=392  Identities=13%  Similarity=0.033  Sum_probs=257.5

Q ss_pred             CCChhhHHHHHHHHHcCCChHHHHHHHccCCC---CCchhHHHHHHHHHhCCChhHHHHHHHhcccC----C-cchHHHH
Q 007573          140 ERNTATYNAMISGFLKHGRLEEATRLFEQMPR---RNVISYTAMLDGFMKKGEVDKARALSDYMSFK----N-VVSWTVM  211 (597)
Q Consensus       140 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~-~~~~~~l  211 (597)
                      ..|+.+|..|.-+..++|+++.+.+.|++...   .....|+.+...|...|....|..+++....+    + ...+-..
T Consensus       320 qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lma  399 (799)
T KOG4162|consen  320 QNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMA  399 (799)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHH
Confidence            45788899999999999999999999998764   34567899999999999999999998877432    2 2333333


Q ss_pred             HHHHH-cCCChHHHHHHHhhcCC------CCCCchHHHHHHHHHHhc-----------CCHHHHHHHHhhcCC---CChh
Q 007573          212 ITGYV-KNERFCEARELFYRMPD------YDKNVFVVTAMITGFCKV-----------GMLENARLLFERIQP---KDCV  270 (597)
Q Consensus       212 l~~~~-~~g~~~~a~~~~~~~~~------~~~~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~~~~---~~~~  270 (597)
                      -..|. +.+.+++++.+-.++.+      -......+..+.-+|...           ....++.+.+++..+   .|+.
T Consensus       400 sklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~  479 (799)
T KOG4162|consen  400 SKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPL  479 (799)
T ss_pred             HHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCch
Confidence            33443 45667776666655544      111233444444444321           123566677776643   3554


Q ss_pred             HHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhccchhHHHHHHHHHHHHhCCCCcccHHHHHHHHHH
Q 007573          271 SFNAMIAGYAQNGVAEEALRLFSGMIKMDMQPDDATLVSVFTACSALQLLNEGRQSHVLVIRNGFEANVSVCNAVITMYS  350 (597)
Q Consensus       271 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  350 (597)
                      +...+.--|+..++.+.|++..++..+-+-..+...|..+.-.++..+++..|..+.+.....- ..|......-+..-.
T Consensus       480 ~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~-~~N~~l~~~~~~i~~  558 (799)
T KOG4162|consen  480 VIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF-GDNHVLMDGKIHIEL  558 (799)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh-hhhhhhchhhhhhhh
Confidence            4445555678888999999999999988777888888888888888999999998887765431 111111111111111


Q ss_pred             hcCCHHHHHHHHhc--------------------------cC-----CCCh-hhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 007573          351 RCGGILDSELAFRQ--------------------------IH-----SPNL-VSWNTIIAAFAQHGHYEKALIFFSQMGL  398 (597)
Q Consensus       351 ~~g~~~~A~~~~~~--------------------------~~-----~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~  398 (597)
                      ..++.+++......                          +.     +.+. .++..+..-....+  ..+..-.. |..
T Consensus       559 ~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~--~~~~se~~-Lp~  635 (799)
T KOG4162|consen  559 TFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQL--KSAGSELK-LPS  635 (799)
T ss_pred             hcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhh--hhcccccc-cCc
Confidence            23344443332222                          11     0111 12222211111110  00000000 111


Q ss_pred             CCCCCCh--------HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC-C
Q 007573          399 NGFDPDG--------ITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMP-F  469 (597)
Q Consensus       399 ~g~~p~~--------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~  469 (597)
                      ..+.|..        ..+......+.+.+..++|...+.+..+  ..+.....|......+...|.+++|.+.|.... .
T Consensus       636 s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~l  713 (799)
T KOG4162|consen  636 STVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK--IDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALAL  713 (799)
T ss_pred             ccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh--cchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhc
Confidence            1122221        2344555677888899999988887764  233446778888888999999999999987765 6


Q ss_pred             CCC-HHHHHHHHHHHHhcCCHHHHHH--HHHHHHhcCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHhCC
Q 007573          470 EAD-TGVWGSLLAACVINLNVELGEL--AAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRVRLLMKEQG  537 (597)
Q Consensus       470 ~p~-~~~~~~l~~~~~~~g~~~~a~~--~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  537 (597)
                      .|+ +....++...+.+.|+...|..  ++..+++++|.++.+|..++.++.+.|+.++|.+-|....+-.
T Consensus       714 dP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe  784 (799)
T KOG4162|consen  714 DPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLE  784 (799)
T ss_pred             CCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhc
Confidence            775 5588999999999999888888  9999999999999999999999999999999999999887744

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=99.31  E-value=2.6e-09  Score=98.58  Aligned_cols=276  Identities=13%  Similarity=0.102  Sum_probs=167.2

Q ss_pred             cCCHHHHHHHHhhcCCC---ChhHHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhccchhHHHHHHH
Q 007573          251 VGMLENARLLFERIQPK---DCVSFNAMIAGYAQNGVAEEALRLFSGMIKMDMQPDDATLVSVFTACSALQLLNEGRQSH  327 (597)
Q Consensus       251 ~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~  327 (597)
                      .|++..|++...+-.+.   ....|..-+.+-.+.|+.+.+-..+.+..+.--.++.....+........|+.+.|..-.
T Consensus        97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v  176 (400)
T COG3071          97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV  176 (400)
T ss_pred             cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence            57777777777665442   223444555556667777777777777766433444444555555566667777777776


Q ss_pred             HHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHhccCCCC-----------hhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 007573          328 VLVIRNGFEANVSVCNAVITMYSRCGGILDSELAFRQIHSPN-----------LVSWNTIIAAFAQHGHYEKALIFFSQM  396 (597)
Q Consensus       328 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----------~~~~~~li~~~~~~g~~~~A~~~~~~m  396 (597)
                      ..+.+.+ +..+.+......+|.+.|++.....++..+.+..           ..+|+.++.-....+..+.-...++..
T Consensus       177 ~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~  255 (400)
T COG3071         177 DQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ  255 (400)
T ss_pred             HHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence            6666665 4556666777777777777777777776665321           124555555554444444444455544


Q ss_pred             HHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHH
Q 007573          397 GLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMP--FEADTG  474 (597)
Q Consensus       397 ~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~  474 (597)
                      -.+ .+-++..-..++.-+.++|+.++|.++.++..+. +..|+.   ..++ ...+-++.+.-++..++..  .+.++.
T Consensus       256 pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~-~~D~~L---~~~~-~~l~~~d~~~l~k~~e~~l~~h~~~p~  329 (400)
T COG3071         256 PRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKR-QWDPRL---CRLI-PRLRPGDPEPLIKAAEKWLKQHPEDPL  329 (400)
T ss_pred             cHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHh-ccChhH---HHHH-hhcCCCCchHHHHHHHHHHHhCCCChh
Confidence            332 3444555566666667777777777777776665 444441   1111 1233344433333332221  122346


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHH
Q 007573          475 VWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRVRLLMK  534 (597)
Q Consensus       475 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  534 (597)
                      .+.+|+..|.+++.+.+|...++.+++..|. ...|..++.++.+.|+..+|.+.+++..
T Consensus       330 L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~~~~A~~~r~e~L  388 (400)
T COG3071         330 LLSTLGRLALKNKLWGKASEALEAALKLRPS-ASDYAELADALDQLGEPEEAEQVRREAL  388 (400)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence            6777777788888888888888877777776 4557778888888888888887777765

>PRK12370 invasion protein regulator; Provisional

Probab=99.30  E-value=1.3e-09  Score=113.35  Aligned_cols=260  Identities=14%  Similarity=0.058  Sum_probs=184.1

Q ss_pred             ChhHHHHHHHHHHH-----cCChhHHHHHHHHhHHCCCCCCHH-HHHHHHHHHh---------ccchhHHHHHHHHHHHH
Q 007573          268 DCVSFNAMIAGYAQ-----NGVAEEALRLFSGMIKMDMQPDDA-TLVSVFTACS---------ALQLLNEGRQSHVLVIR  332 (597)
Q Consensus       268 ~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~---------~~~~~~~a~~~~~~~~~  332 (597)
                      +...|...+.+...     .+..++|+.+|++..+.  .|+.. .+..+..++.         ..++.++|...++.+++
T Consensus       255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~  332 (553)
T PRK12370        255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATE  332 (553)
T ss_pred             ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHh
Confidence            44555555555322     13357888888888764  55443 3333332222         33457889999988888


Q ss_pred             hCCCCcccHHHHHHHHHHhcCCHHHHHHHHhccC---CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCh-HHH
Q 007573          333 NGFEANVSVCNAVITMYSRCGGILDSELAFRQIH---SPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDG-ITF  408 (597)
Q Consensus       333 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~  408 (597)
                      .+ +.+...+..+...+...|++++|...|++..   +.+...|..+...+...|++++|+..+++..+.  .|+. ..+
T Consensus       333 ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l--~P~~~~~~  409 (553)
T PRK12370        333 LD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKL--DPTRAAAG  409 (553)
T ss_pred             cC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCChhhH
Confidence            76 5567788888889999999999999999876   445668888899999999999999999999876  4443 233


Q ss_pred             HHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCCCHH-HHHHHHHHHHh
Q 007573          409 LSLLSACGHAGKVNESMDLFELMVKVYGIIP-SSEHYTCLVDILSRAGQLEKAWQITQGMP-FEADTG-VWGSLLAACVI  485 (597)
Q Consensus       409 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~-~~~~l~~~~~~  485 (597)
                      ..++..+...|++++|...++++.+.  ..| ++..+..+..+|...|+.++|...++++. ..|+.. .++.+...+..
T Consensus       410 ~~~~~~~~~~g~~eeA~~~~~~~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~  487 (553)
T PRK12370        410 ITKLWITYYHTGIDDAIRLGDELRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQ  487 (553)
T ss_pred             HHHHHHHHhccCHHHHHHHHHHHHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhc
Confidence            34444566689999999999988763  234 35567788889999999999999998876 445544 45555566777


Q ss_pred             cCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHhCC
Q 007573          486 NLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRVRLLMKEQG  537 (597)
Q Consensus       486 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  537 (597)
                      .|  +.|...++++++..-..+.........|.-.|+-+.+..+ +++.+.+
T Consensus       488 ~g--~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~  536 (553)
T PRK12370        488 NS--ERALPTIREFLESEQRIDNNPGLLPLVLVAHGEAIAEKMW-NKFKNED  536 (553)
T ss_pred             cH--HHHHHHHHHHHHHhhHhhcCchHHHHHHHHHhhhHHHHHH-HHhhccc
Confidence            77  4788888887764333332233377778888888877776 7776654

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.25  E-value=4.4e-08  Score=88.78  Aligned_cols=435  Identities=11%  Similarity=0.061  Sum_probs=230.6

Q ss_pred             HHHHHhcCChHHHHHHHhhcCCCCc----chHHHHHHHHHhCCChhHHHHHHhhCCCC---CcchHHHHHHHHHcCCChH
Q 007573           57 ISALSRAGKISAARQLFDQMTTKDV----ITWNAIITGYWQNGFLQESKNLFQSMPVK---NIVSWNCMIAGCIDNDRID  129 (597)
Q Consensus        57 ~~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~~~~~  129 (597)
                      +.-+....++..|+.+++--..-+.    .+-..+..++.+.|++++|+..|..+.+.   +...+..|.-.+.-.|.+.
T Consensus        29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~  108 (557)
T KOG3785|consen   29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYI  108 (557)
T ss_pred             HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHH
Confidence            4455566778888887775543111    12233455666778888888877776543   4445555555555567777


Q ss_pred             HHHHHHccCCCCChhhHHHHHHHHHcCCChHHHHHHHccCCCCCchhHHHHHHHHHhCCChhHHHHHHHhcccCC--cch
Q 007573          130 DAFDYFQAMPERNTATYNAMISGFLKHGRLEEATRLFEQMPRRNVISYTAMLDGFMKKGEVDKARALSDYMSFKN--VVS  207 (597)
Q Consensus       130 ~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~~  207 (597)
                      +|..+-... +.++..-..|.+.-.+.|+-++-....+.+... ..--.+|.......-.+.+|++++.+....+  -..
T Consensus       109 eA~~~~~ka-~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~-~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~a  186 (557)
T KOG3785|consen  109 EAKSIAEKA-PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-LEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIA  186 (557)
T ss_pred             HHHHHHhhC-CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-HHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhh
Confidence            777766654 233444444555566666666655555444321 2233344454444556777777777774433  333


Q ss_pred             HHH-HHHHHHcCCChHHHHHHHhhcCCCCCCch-HHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHc---
Q 007573          208 WTV-MITGYVKNERFCEARELFYRMPDYDKNVF-VVTAMITGFCKVGMLENARLLFERIQPKDCVSFNAMIAGYAQN---  282 (597)
Q Consensus       208 ~~~-ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~---  282 (597)
                      .|. +.-+|.+..-++-+.+++....+.-||.. ..|..+....|.=+-..|..-...+...-...|. .+.-++++   
T Consensus       187 lNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~-f~~~l~rHNLV  265 (557)
T KOG3785|consen  187 LNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYP-FIEYLCRHNLV  265 (557)
T ss_pred             hHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccch-hHHHHHHcCeE
Confidence            443 33455666667777777766655444433 3333333333321111122212222111111111 12222222   


Q ss_pred             --CChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhccchhHHHHHHHHHHHHhCCCCc-ccHHHHHHHHHHhcC------
Q 007573          283 --GVAEEALRLFSGMIKMDMQPDDATLVSVFTACSALQLLNEGRQSHVLVIRNGFEAN-VSVCNAVITMYSRCG------  353 (597)
Q Consensus       283 --g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g------  353 (597)
                        ...+.|++++-.+.+  +.|...  ..++-.+.+.+++.+|..+.+++     .|. +.-|-.-.-.++..|      
T Consensus       266 vFrngEgALqVLP~L~~--~IPEAR--lNL~iYyL~q~dVqeA~~L~Kdl-----~PttP~EyilKgvv~aalGQe~gSr  336 (557)
T KOG3785|consen  266 VFRNGEGALQVLPSLMK--HIPEAR--LNLIIYYLNQNDVQEAISLCKDL-----DPTTPYEYILKGVVFAALGQETGSR  336 (557)
T ss_pred             EEeCCccHHHhchHHHh--hChHhh--hhheeeecccccHHHHHHHHhhc-----CCCChHHHHHHHHHHHHhhhhcCcH
Confidence              234566666655544  233322  23444556777777776655433     222 211211111222222      


Q ss_pred             -CHHHHHHHHhccCC-----CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHH
Q 007573          354 -GILDSELAFRQIHS-----PNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDL  427 (597)
Q Consensus       354 -~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~  427 (597)
                       .+.-|++.|+...+     ..+.--.++.+.+.-..++++.+.++.....-- ..|...-..+..+.+..|.+.+|.++
T Consensus       337 eHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF-~NdD~Fn~N~AQAk~atgny~eaEel  415 (557)
T KOG3785|consen  337 EHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYF-TNDDDFNLNLAQAKLATGNYVEAEEL  415 (557)
T ss_pred             HHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcchhhhHHHHHHHHhcChHHHHHH
Confidence             24455566654431     223344556666666667777777777665542 33333333466777777888888888


Q ss_pred             HHHhHHhcCCCCChHHH-HHHHHHHhhcCCHHHHHHHHhhCCCCCCHHHHHHHH-HHHHhcCCHHHHHHHHHHHHhcCCC
Q 007573          428 FELMVKVYGIIPSSEHY-TCLVDILSRAGQLEKAWQITQGMPFEADTGVWGSLL-AACVINLNVELGELAAKKMRELDPQ  505 (597)
Q Consensus       428 ~~~~~~~~~~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~-~~~~~~g~~~~a~~~~~~~~~~~p~  505 (597)
                      |-.+... .+ .+..+| ..|...|.++++++-|++++-++..+.+..+...+| .-|.+.+.+--|-+.|+.+-.++|.
T Consensus       416 f~~is~~-~i-kn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~  493 (557)
T KOG3785|consen  416 FIRISGP-EI-KNKILYKSMLARCYIRNKKPQLAWDMMLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPT  493 (557)
T ss_pred             HhhhcCh-hh-hhhHHHHHHHHHHHHhcCCchHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCC
Confidence            7665421 22 233444 345677778888888888877776333444444444 4477777777777777777777776


Q ss_pred             C
Q 007573          506 N  506 (597)
Q Consensus       506 ~  506 (597)
                      +
T Consensus       494 p  494 (557)
T KOG3785|consen  494 P  494 (557)
T ss_pred             c
Confidence            4

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.25  E-value=6e-08  Score=87.89  Aligned_cols=449  Identities=12%  Similarity=0.095  Sum_probs=273.7

Q ss_pred             CcchHHHHHHHHHhcCChHHHHHHHhhcCC---CCcchHHHHHHHHHhCCChhHHHHHHhhCCCCCcchHHHHHHHHHcC
Q 007573           49 YVFVNNAKISALSRAGKISAARQLFDQMTT---KDVITWNAIITGYWQNGFLQESKNLFQSMPVKNIVSWNCMIAGCIDN  125 (597)
Q Consensus        49 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~  125 (597)
                      +...|  +...|.+.|++++|..++.-+.+   ++...|-.|.-.+.-.|.+.+|..+-.+..+ ++-.--.+.....+.
T Consensus        58 ~~~lW--ia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k-~pL~~RLlfhlahkl  134 (557)
T KOG3785|consen   58 SLQLW--IAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPK-TPLCIRLLFHLAHKL  134 (557)
T ss_pred             HHHHH--HHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHh
Confidence            34444  45567789999999999998765   5666777787777788999999998887753 333333444555677


Q ss_pred             CChHHHHHHHccCCCCChhhHHHHHHHHHcCCChHHHHHHHccCCCC--CchhHHH-HHHHHHhCCChhHHHHHHHhc--
Q 007573          126 DRIDDAFDYFQAMPERNTATYNAMISGFLKHGRLEEATRLFEQMPRR--NVISYTA-MLDGFMKKGEVDKARALSDYM--  200 (597)
Q Consensus       126 ~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~-li~~~~~~g~~~~A~~~~~~m--  200 (597)
                      ++-.+-....+.+... ..-.-+|....-..-.+.+|++++.++...  +-...|. +.-+|.+..-++-+.++++--  
T Consensus       135 ndEk~~~~fh~~LqD~-~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~  213 (557)
T KOG3785|consen  135 NDEKRILTFHSSLQDT-LEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLR  213 (557)
T ss_pred             CcHHHHHHHHHHHhhh-HHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHH
Confidence            7777777666665422 233344555544555689999999998763  3344444 445677778777777776655  


Q ss_pred             ccCC-cchHHHHHHHHHcCCChHHHHHHHhhcCC-CCCCchHHHHHHHHHHhc-----CCHHHHHHHHhhcCCCChhHHH
Q 007573          201 SFKN-VVSWTVMITGYVKNERFCEARELFYRMPD-YDKNVFVVTAMITGFCKV-----GMLENARLLFERIQPKDCVSFN  273 (597)
Q Consensus       201 ~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~  273 (597)
                      ..|| ....|..+....+.=.-..|++-...+.+ ....    .-.+.-+++.     .+-+.|++++-.+.+.=+.+--
T Consensus       214 q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~----~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARl  289 (557)
T KOG3785|consen  214 QFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE----YPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARL  289 (557)
T ss_pred             hCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc----chhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhh
Confidence            2344 34445444333332222222222222222 1111    1122333332     2346677777665554444555


Q ss_pred             HHHHHHHHcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHH-----HhccchhHHHHHHHHHHHHhCCCCcccH-HHHHHH
Q 007573          274 AMIAGYAQNGVAEEALRLFSGMIKMDMQPDDATLVSVFTA-----CSALQLLNEGRQSHVLVIRNGFEANVSV-CNAVIT  347 (597)
Q Consensus       274 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~-----~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~  347 (597)
                      .|+--|.++++..+|..+.+++.-  ..|-......+..+     ......+.-|.+.++.+-.++...|+.. -.++..
T Consensus       290 NL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs  367 (557)
T KOG3785|consen  290 NLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMAS  367 (557)
T ss_pred             hheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHH
Confidence            666678888999999888776532  23444333333332     2234456677788887777766555433 345555


Q ss_pred             HHHhcCCHHHHHHHHhccC----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHH-HHHHhccCcHH
Q 007573          348 MYSRCGGILDSELAFRQIH----SPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSL-LSACGHAGKVN  422 (597)
Q Consensus       348 ~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l-l~~~~~~g~~~  422 (597)
                      .+.-..++++++..++.+.    ..|...+| +.++++..|++.+|.++|-+.....+ -|..+|..+ .+++.+.+.++
T Consensus       368 ~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~~i-kn~~~Y~s~LArCyi~nkkP~  445 (557)
T KOG3785|consen  368 YFFLSFQFDDVLTYLNSIESYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGPEI-KNKILYKSMLARCYIRNKKPQ  445 (557)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcChhh-hhhHHHHHHHHHHHHhcCCch
Confidence            5666677888888887776    33444444 67888999999999999976643322 345566555 47788999999


Q ss_pred             HHHHHHHHhHHhcCCCCChH-HHHHHHHHHhhcCCHHHHHHHHhhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007573          423 ESMDLFELMVKVYGIIPSSE-HYTCLVDILSRAGQLEKAWQITQGMP-FEADTGVWGSLLAACVINLNVELGELAAKKMR  500 (597)
Q Consensus       423 ~a~~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  500 (597)
                      .|+.++-.+    +.+.+.. ....+..-|.+++.+=-|.+.|+.+. ..|++.-|..--.+|         ..+|..+.
T Consensus       446 lAW~~~lk~----~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~pEnWeGKRGAC---------aG~f~~l~  512 (557)
T KOG3785|consen  446 LAWDMMLKT----NTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPTPENWEGKRGAC---------AGLFRQLA  512 (557)
T ss_pred             HHHHHHHhc----CCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCccccCCccchH---------HHHHHHHH
Confidence            998876543    3222333 33345567788888888888888776 678888886544444         23444444


Q ss_pred             h--cCCCCCchHHHHHHHHHhcCC
Q 007573          501 E--LDPQNSAVYVMLSNLYAAAGM  522 (597)
Q Consensus       501 ~--~~p~~~~~~~~l~~~~~~~g~  522 (597)
                      .  .+|.+.....-+...+...++
T Consensus       513 ~~~~~~~p~~~~rEVvhllr~~~n  536 (557)
T KOG3785|consen  513 NHKTDPIPISQMREVVHLLRMKPN  536 (557)
T ss_pred             cCCCCCCchhHHHHHHHHHHhCCC
Confidence            2  344444445555555555444

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.24  E-value=2e-09  Score=106.46  Aligned_cols=192  Identities=14%  Similarity=0.192  Sum_probs=139.2

Q ss_pred             HHHHHHHhcCCHHHHHHHHhccC--------CC---ChhhHHHHHHHHHHcCCHHHHHHHHHHHHH-----CCC-CCCh-
Q 007573          344 AVITMYSRCGGILDSELAFRQIH--------SP---NLVSWNTIIAAFAQHGHYEKALIFFSQMGL-----NGF-DPDG-  405 (597)
Q Consensus       344 ~l~~~~~~~g~~~~A~~~~~~~~--------~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~-~p~~-  405 (597)
                      .+...|...+++.+|..+|+++.        +.   -..+++.|...|.+.|++++|..++++..+     .|. .|.. 
T Consensus       246 ~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~  325 (508)
T KOG1840|consen  246 ILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVA  325 (508)
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHH
Confidence            45556666666666666666554        11   123666677778888888777777666542     121 2222 


Q ss_pred             HHHHHHHHHHhccCcHHHHHHHHHHhHHhcC--CCCC----hHHHHHHHHHHhhcCCHHHHHHHHhhCC-------C--C
Q 007573          406 ITFLSLLSACGHAGKVNESMDLFELMVKVYG--IIPS----SEHYTCLVDILSRAGQLEKAWQITQGMP-------F--E  470 (597)
Q Consensus       406 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~--~  470 (597)
                      ..++.+...|...+++++|..++....+.+.  ..++    ..+++.|...|...|++++|+++++++.       .  .
T Consensus       326 ~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~  405 (508)
T KOG1840|consen  326 AQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKD  405 (508)
T ss_pred             HHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcC
Confidence            2466677788889999999998887766543  2222    4678999999999999999999998764       1  2


Q ss_pred             CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCC---CchHHHHHHHHHhcCCcHHHHHHHHHHHh
Q 007573          471 AD-TGVWGSLLAACVINLNVELGELAAKKMREL----DPQN---SAVYVMLSNLYAAAGMWRDVTRVRLLMKE  535 (597)
Q Consensus       471 p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  535 (597)
                      +. ...++.+...|.+.++..+|.++|.+...+    +|+.   ..+|..|+.+|...|++++|.++.+.+..
T Consensus       406 ~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~  478 (508)
T KOG1840|consen  406 YGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN  478 (508)
T ss_pred             hhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence            22 346788889999999999999999988753    4554   56688999999999999999999998864

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.23  E-value=5.1e-10  Score=99.95  Aligned_cols=229  Identities=12%  Similarity=0.019  Sum_probs=147.5

Q ss_pred             HHHHHHHHHcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhccchhHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhc
Q 007573          273 NAMIAGYAQNGVAEEALRLFSGMIKMDMQPDDATLVSVFTACSALQLLNEGRQSHVLVIRNGFEANVSVCNAVITMYSRC  352 (597)
Q Consensus       273 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  352 (597)
                      +.+.++|.+.|-+.+|.+.|+..++.  .|-..||..+-.+|.+..+...|..++.+-++.- +                
T Consensus       227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~f-P----------------  287 (478)
T KOG1129|consen  227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF-P----------------  287 (478)
T ss_pred             HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC-C----------------
Confidence            45667777777777777777666654  3333444444444444444444444444433321 2                


Q ss_pred             CCHHHHHHHHhccCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhH
Q 007573          353 GGILDSELAFRQIHSPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMV  432 (597)
Q Consensus       353 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~  432 (597)
                                     .|+.....+...+-..++.++|.++++...+.. +.+......+...|.-.++++-|+.+++++.
T Consensus       288 ---------------~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiL  351 (478)
T KOG1129|consen  288 ---------------FDVTYLLGQARIHEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRIL  351 (478)
T ss_pred             ---------------chhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHH
Confidence                           223333334445555566666666666665542 3334444455555556666666666666666


Q ss_pred             HhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC---CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 007573          433 KVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMP---FEAD--TGVWGSLLAACVINLNVELGELAAKKMRELDPQNS  507 (597)
Q Consensus       433 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~  507 (597)
                      +- |+ -+++.|..+.-.|.-.++++-++.-|++..   ..|+  ..+|..+.......||+..|.+.|+-++..+|++.
T Consensus       352 qm-G~-~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~  429 (478)
T KOG1129|consen  352 QM-GA-QSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHG  429 (478)
T ss_pred             Hh-cC-CChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchH
Confidence            54 43 345566666666666666666666665543   2343  45788888888889999999999999999999999


Q ss_pred             chHHHHHHHHHhcCCcHHHHHHHHHHHhCCC
Q 007573          508 AVYVMLSNLYAAAGMWRDVTRVRLLMKEQGV  538 (597)
Q Consensus       508 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  538 (597)
                      ..+++|+-.-.+.|++++|..++.......+
T Consensus       430 ealnNLavL~~r~G~i~~Arsll~~A~s~~P  460 (478)
T KOG1129|consen  430 EALNNLAVLAARSGDILGARSLLNAAKSVMP  460 (478)
T ss_pred             HHHHhHHHHHhhcCchHHHHHHHHHhhhhCc
Confidence            9999999999999999999999998876543

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.23  E-value=1.3e-09  Score=93.04  Aligned_cols=162  Identities=17%  Similarity=0.163  Sum_probs=141.2

Q ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHH
Q 007573          372 SWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPD-GITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPS-SEHYTCLVD  449 (597)
Q Consensus       372 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~  449 (597)
                      +...+.-+|...|+...|..-+++.++.  .|+ ..++..+...|.+.|..+.|.+.|++..+   +.|+ ..+.|....
T Consensus        37 arlqLal~YL~~gd~~~A~~nlekAL~~--DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls---l~p~~GdVLNNYG~  111 (250)
T COG3063          37 ARLQLALGYLQQGDYAQAKKNLEKALEH--DPSYYLAHLVRAHYYQKLGENDLADESYRKALS---LAPNNGDVLNNYGA  111 (250)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHh---cCCCccchhhhhhH
Confidence            3455677899999999999999999886  454 56888888999999999999999998874   4554 778899999


Q ss_pred             HHhhcCCHHHHHHHHhhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcHH
Q 007573          450 ILSRAGQLEKAWQITQGMPFEAD----TGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRD  525 (597)
Q Consensus       450 ~~~~~g~~~~A~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~  525 (597)
                      -+|..|++++|...|++....|+    ..+|..++.+..+.|+++.|...+++.++++|+.+.....+.....+.|++-.
T Consensus       112 FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~  191 (250)
T COG3063         112 FLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAP  191 (250)
T ss_pred             HHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchH
Confidence            99999999999999998775554    55888898888999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhCCC
Q 007573          526 VTRVRLLMKEQGV  538 (597)
Q Consensus       526 A~~~~~~~~~~~~  538 (597)
                      |..+++.....+.
T Consensus       192 Ar~~~~~~~~~~~  204 (250)
T COG3063         192 ARLYLERYQQRGG  204 (250)
T ss_pred             HHHHHHHHHhccc
Confidence            9999998877653

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.23  E-value=2.2e-09  Score=102.01  Aligned_cols=212  Identities=12%  Similarity=0.077  Sum_probs=145.3

Q ss_pred             chhHHHHHHHHHHHHhC-CCC--cccHHHHHHHHHHhcCCHHHHHHHHhccC---CCChhhHHHHHHHHHHcCCHHHHHH
Q 007573          318 QLLNEGRQSHVLVIRNG-FEA--NVSVCNAVITMYSRCGGILDSELAFRQIH---SPNLVSWNTIIAAFAQHGHYEKALI  391 (597)
Q Consensus       318 ~~~~~a~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~  391 (597)
                      +..+.+..-+.+++... ..|  ....+..+...|.+.|+.++|...|++..   +.+...|+.+...+...|++++|.+
T Consensus        40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~  119 (296)
T PRK11189         40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE  119 (296)
T ss_pred             hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence            34455555566666432 122  23457777888889999999999888775   4567789999999999999999999


Q ss_pred             HHHHHHHCCCCCC-hHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC--
Q 007573          392 FFSQMGLNGFDPD-GITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMP--  468 (597)
Q Consensus       392 ~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--  468 (597)
                      .|++..+.  .|+ ..++..+..++...|++++|.+.|+...+.   .|+..........+...++.++|.+.+++..  
T Consensus       120 ~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~---~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~  194 (296)
T PRK11189        120 AFDSVLEL--DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD---DPNDPYRALWLYLAESKLDPKQAKENLKQRYEK  194 (296)
T ss_pred             HHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh
Confidence            99998864  454 567777888888899999999999988764   3443222222233456778999999986543  


Q ss_pred             CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-------hcCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHhCCC
Q 007573          469 FEADTGVWGSLLAACVINLNVELGELAAKKMR-------ELDPQNSAVYVMLSNLYAAAGMWRDVTRVRLLMKEQGV  538 (597)
Q Consensus       469 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-------~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  538 (597)
                      ..|+...| .  ......|+...+ ..++.+.       +++|+.+.+|..++.++...|++++|+..|++..+.++
T Consensus       195 ~~~~~~~~-~--~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~  267 (296)
T PRK11189        195 LDKEQWGW-N--IVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV  267 (296)
T ss_pred             CCccccHH-H--HHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence            23332222 2  222234444333 2333333       44556678899999999999999999999999887653

>PRK12370 invasion protein regulator; Provisional

Probab=99.23  E-value=2.1e-09  Score=111.68  Aligned_cols=211  Identities=11%  Similarity=0.032  Sum_probs=164.9

Q ss_pred             chhHHHHHHHHHHHHhCCCCcccHHHHHHHHHHh---------cCCHHHHHHHHhccC---CCChhhHHHHHHHHHHcCC
Q 007573          318 QLLNEGRQSHVLVIRNGFEANVSVCNAVITMYSR---------CGGILDSELAFRQIH---SPNLVSWNTIIAAFAQHGH  385 (597)
Q Consensus       318 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~  385 (597)
                      ++.++|...+++.++.. +.+...+..+..+|..         .+++++|...+++..   +.+...+..+...+...|+
T Consensus       275 ~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~  353 (553)
T PRK12370        275 YSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSE  353 (553)
T ss_pred             HHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC
Confidence            45788999999988775 3345566666655542         245789999998876   4567788888888999999


Q ss_pred             HHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHH
Q 007573          386 YEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPS-SEHYTCLVDILSRAGQLEKAWQIT  464 (597)
Q Consensus       386 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~  464 (597)
                      +++|...|++..+.. +.+...+..+..++...|++++|...++++.+.   .|+ ...+..++..+...|++++|...+
T Consensus       354 ~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l---~P~~~~~~~~~~~~~~~~g~~eeA~~~~  429 (553)
T PRK12370        354 YIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKL---DPTRAAAGITKLWITYYHTGIDDAIRLG  429 (553)
T ss_pred             HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCChhhHHHHHHHHHhccCHHHHHHHH
Confidence            999999999998863 334667888888999999999999999998854   454 233344555677789999999999


Q ss_pred             hhCC--CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHh
Q 007573          465 QGMP--FEAD-TGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRVRLLMKE  535 (597)
Q Consensus       465 ~~~~--~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  535 (597)
                      ++..  .+|+ +..+..+..++...|+.++|...++++....|.+......++..|...|  ++|...++.+.+
T Consensus       430 ~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~  501 (553)
T PRK12370        430 DELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLE  501 (553)
T ss_pred             HHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHH
Confidence            8865  2354 4457777888889999999999999998888888888888888888888  488888888765

>PF13041 PPR_2: PPR repeat family

Probab=99.22  E-value=4.2e-11  Score=79.38  Aligned_cols=50  Identities=32%  Similarity=0.689  Sum_probs=45.9

Q ss_pred             CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhc
Q 007573          368 PNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGH  417 (597)
Q Consensus       368 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~  417 (597)
                      ||..+||++|.+|++.|++++|.++|++|.+.|+.||..||+.++++|++
T Consensus         1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k   50 (50)
T PF13041_consen    1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK   50 (50)
T ss_pred             CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence            78899999999999999999999999999999999999999999998874

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=99.22  E-value=2.8e-07  Score=92.48  Aligned_cols=234  Identities=13%  Similarity=0.117  Sum_probs=168.1

Q ss_pred             CCCcchHHHHHHH--HHhcCChHHHHHHHhhcCCCCcchHHHHHHHHHhCCChhHHHHHHhhCCCC-----------Cc-
Q 007573           47 TQYVFVNNAKISA--LSRAGKISAARQLFDQMTTKDVITWNAIITGYWQNGFLQESKNLFQSMPVK-----------NI-  112 (597)
Q Consensus        47 ~~~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----------~~-  112 (597)
                      ..|..+-..+++.  |..-|+.+.|.+..+-+...  ..|..|.+.+.+..+.+-|.-.+..|...           |. 
T Consensus       723 ~Cd~~TRkaml~FSfyvtiG~MD~AfksI~~IkS~--~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~  800 (1416)
T KOG3617|consen  723 NCDESTRKAMLDFSFYVTIGSMDAAFKSIQFIKSD--SVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE  800 (1416)
T ss_pred             ccCHHHHHhhhceeEEEEeccHHHHHHHHHHHhhh--HHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc
Confidence            5666677666654  45679999998877666543  46999999999988888888777777521           22 


Q ss_pred             chHHHHHHHHHcCCChHHHHHHHccCCCCChhhHHHHHHHHHcCCChHHHHHHHccCCCC-CchhHHHHHHHHHhCCChh
Q 007573          113 VSWNCMIAGCIDNDRIDDAFDYFQAMPERNTATYNAMISGFLKHGRLEEATRLFEQMPRR-NVISYTAMLDGFMKKGEVD  191 (597)
Q Consensus       113 ~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~~g~~~  191 (597)
                      ..-..+.-.....|.+++|+.++++...     |..|=..|-..|.+++|.++-+.-.+- =..||.....-+-..++.+
T Consensus       801 e~eakvAvLAieLgMlEeA~~lYr~ckR-----~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~  875 (1416)
T KOG3617|consen  801 EDEAKVAVLAIELGMLEEALILYRQCKR-----YDLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIE  875 (1416)
T ss_pred             chhhHHHHHHHHHhhHHHHHHHHHHHHH-----HHHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHH
Confidence            3333444445578899999999987743     444667788889999999887653331 1235666677777788899


Q ss_pred             HHHHHHHhc-----------------------ccCCcchHHHHHHHHHcCCChHHHHHHHhhcCCCCCCchHHHHHHHHH
Q 007573          192 KARALSDYM-----------------------SFKNVVSWTVMITGYVKNERFCEARELFYRMPDYDKNVFVVTAMITGF  248 (597)
Q Consensus       192 ~A~~~~~~m-----------------------~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~  248 (597)
                      .|++.|++.                       ...|...|.-....+-..|+.+.|+.+|..+.+       |-++++..
T Consensus       876 ~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D-------~fs~VrI~  948 (1416)
T KOG3617|consen  876 AALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD-------YFSMVRIK  948 (1416)
T ss_pred             HHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh-------hhhheeeE
Confidence            999998877                       123555566666777788999999999988765       66677777


Q ss_pred             HhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChhHHHHHHHHhH
Q 007573          249 CKVGMLENARLLFERIQPKDCVSFNAMIAGYAQNGVAEEALRLFSGMI  296 (597)
Q Consensus       249 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~  296 (597)
                      |-.|+.++|-++-++-  .|..+...+.+.|-..|++.+|+..|.+.+
T Consensus       949 C~qGk~~kAa~iA~es--gd~AAcYhlaR~YEn~g~v~~Av~FfTrAq  994 (1416)
T KOG3617|consen  949 CIQGKTDKAARIAEES--GDKAACYHLARMYENDGDVVKAVKFFTRAQ  994 (1416)
T ss_pred             eeccCchHHHHHHHhc--ccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence            7778888887777653  355566677888888888888888887654

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.22  E-value=4.8e-09  Score=96.82  Aligned_cols=200  Identities=15%  Similarity=0.100  Sum_probs=122.6

Q ss_pred             hhHHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhccchhHHHHHHHHHHHHhCCCCcccHHHHHHHH
Q 007573          269 CVSFNAMIAGYAQNGVAEEALRLFSGMIKMDMQPDDATLVSVFTACSALQLLNEGRQSHVLVIRNGFEANVSVCNAVITM  348 (597)
Q Consensus       269 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  348 (597)
                      ...+..+...+...|++++|...+++..+.. +.+...+..+...+...|+.+.|...+....+..              
T Consensus        31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--------------   95 (234)
T TIGR02521        31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN--------------   95 (234)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--------------
Confidence            4567777777888888888888887776542 1123333333444444444444444444443332              


Q ss_pred             HHhcCCHHHHHHHHhccCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHhccCcHHHHHHH
Q 007573          349 YSRCGGILDSELAFRQIHSPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDP-DGITFLSLLSACGHAGKVNESMDL  427 (597)
Q Consensus       349 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~  427 (597)
                                        +.+...+..+...+...|++++|.+.+++.......| ....+..+..++...|++++|...
T Consensus        96 ------------------~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~  157 (234)
T TIGR02521        96 ------------------PNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKY  157 (234)
T ss_pred             ------------------CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHH
Confidence                              2334455556666667777777777777766532222 234455566667777777777777


Q ss_pred             HHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 007573          428 FELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMP--FEADTGVWGSLLAACVINLNVELGELAAKKMRELD  503 (597)
Q Consensus       428 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  503 (597)
                      +++..+.  .+.+...+..+...+...|++++|...+++..  .+.+...+..+...+...|+.++|..+.+.+.+..
T Consensus       158 ~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~  233 (234)
T TIGR02521       158 LTRALQI--DPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLF  233 (234)
T ss_pred             HHHHHHh--CcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhC
Confidence            7777653  22235566677777777888888877777654  23345556666666777788888887777766554

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=99.22  E-value=7.4e-08  Score=94.34  Aligned_cols=456  Identities=10%  Similarity=0.054  Sum_probs=265.6

Q ss_pred             HHHHHHHhCCChhHHHHHHhhCCCC---CcchHHHHHHHHHcCCChHHHHHHHccCC---CCChhhHHHHHHHHHcCCCh
Q 007573           86 AIITGYWQNGFLQESKNLFQSMPVK---NIVSWNCMIAGCIDNDRIDDAFDYFQAMP---ERNTATYNAMISGFLKHGRL  159 (597)
Q Consensus        86 ~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~  159 (597)
                      .++..| ..+++...+.+.+.+.+.   ...|.....-.+...|+.++|......-.   ..+.+.|..+.-.+....++
T Consensus        13 ~~lk~y-E~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y   91 (700)
T KOG1156|consen   13 RALKCY-ETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKY   91 (700)
T ss_pred             HHHHHH-HHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhH
Confidence            344443 345566666666655543   44444444445566777777777776665   33456777777777777778


Q ss_pred             HHHHHHHccCCC---CCchhHHHHHHHHHhCCChhHHHHHHHhcc---cCCcchHHHHHHHHHcCCChHHHHHHHhhcCC
Q 007573          160 EEATRLFEQMPR---RNVISYTAMLDGFMKKGEVDKARALSDYMS---FKNVVSWTVMITGYVKNERFCEARELFYRMPD  233 (597)
Q Consensus       160 ~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~---~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~  233 (597)
                      ++|++.|.....   .|...|.-+.-.-++.|+++.....-....   ......|..++.++.-.|++..|..+++...+
T Consensus        92 ~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~  171 (700)
T KOG1156|consen   92 DEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEK  171 (700)
T ss_pred             HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888888776543   344455544444455666666655544442   22345677777777777888888777777665


Q ss_pred             C---CCCchHHHHH------HHHHHhcCCHHHHHHHHhhcCCC--C-hhHHHHHHHHHHHcCChhHHHHHHHHhHHCCCC
Q 007573          234 Y---DKNVFVVTAM------ITGFCKVGMLENARLLFERIQPK--D-CVSFNAMIAGYAQNGVAEEALRLFSGMIKMDMQ  301 (597)
Q Consensus       234 ~---~~~~~~~~~l------~~~~~~~g~~~~A~~~~~~~~~~--~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~  301 (597)
                      .   .|+...+.-.      .....+.|.+++|.+.+....+.  | ...-.+-...+.+.++.++|..++..++..  .
T Consensus       172 t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--n  249 (700)
T KOG1156|consen  172 TQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--N  249 (700)
T ss_pred             hhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--C
Confidence            2   2444433221      23345667777777776665543  2 223334556667777777777777777764  5


Q ss_pred             CCHHHHHHHHHHHhc-c-chhHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHhccCCCChhhHHHHHHH
Q 007573          302 PDDATLVSVFTACSA-L-QLLNEGRQSHVLVIRNGFEANVSVCNAVITMYSRCGGILDSELAFRQIHSPNLVSWNTIIAA  379 (597)
Q Consensus       302 p~~~~~~~ll~~~~~-~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~  379 (597)
                      ||...|...+..+.- . +..+....++....+.-.                            .-..|-....+    .
T Consensus       250 Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~----------------------------r~e~p~Rlpls----v  297 (700)
T KOG1156|consen  250 PDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYP----------------------------RHECPRRLPLS----V  297 (700)
T ss_pred             chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCc----------------------------ccccchhccHH----H
Confidence            666655544433221 1 111111122211111100                            00001001111    1


Q ss_pred             HHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHH---H-HHHHHHHhHHh---------cCCCCChH--HH
Q 007573          380 FAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVN---E-SMDLFELMVKV---------YGIIPSSE--HY  444 (597)
Q Consensus       380 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~---~-a~~~~~~~~~~---------~~~~p~~~--~~  444 (597)
                      .....-.+..-+++..+.+.|+++--..+..   .+-.....+   + +..+...+...         ..-+|...  ++
T Consensus       298 l~~eel~~~vdkyL~~~l~Kg~p~vf~dl~S---Lyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~  374 (700)
T KOG1156|consen  298 LNGEELKEIVDKYLRPLLSKGVPSVFKDLRS---LYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTL  374 (700)
T ss_pred             hCcchhHHHHHHHHHHHhhcCCCchhhhhHH---HHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHH
Confidence            1111223444556667777776553332222   222211111   0 11111111100         00145544  34


Q ss_pred             HHHHHHHhhcCCHHHHHHHHhhCC-CCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCC
Q 007573          445 TCLVDILSRAGQLEKAWQITQGMP-FEADTG-VWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGM  522 (597)
Q Consensus       445 ~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~  522 (597)
                      -.++..+-+.|+++.|+.+++... ..|+.. .|..-...+.+.|+.++|...++++.+++-.|..+-..-+.-..+..+
T Consensus       375 y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~  454 (700)
T KOG1156|consen  375 YFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANE  454 (700)
T ss_pred             HHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccc
Confidence            457788899999999999999876 556643 566667889999999999999999999998877766678888899999


Q ss_pred             cHHHHHHHHHHHhCCCcc-----CCCeeEEEECCEEEEEEeCCCCCcchHHHHHHHHHHHHHHhhcCCccchhcccc
Q 007573          523 WRDVTRVRLLMKEQGVTK-----QCAYSWIEIGNKVHYFLGGDMSHPCIDKIHLELKRASVQMKSVDDFVEIATSWS  594 (597)
Q Consensus       523 ~~~A~~~~~~~~~~~~~~-----~~~~s~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  594 (597)
                      .++|.++.....+.|...     +..+.|.               --+..+.+....+.....++...+..++..|+
T Consensus       455 i~eA~~~~skFTr~~~~~~~~L~~mqcmWf---------------~~E~g~ay~r~~k~g~ALKkfh~i~k~~~~~~  516 (700)
T KOG1156|consen  455 IEEAEEVLSKFTREGFGAVNNLAEMQCMWF---------------QLEDGEAYLRQNKLGLALKKFHEIEKHYKTWS  516 (700)
T ss_pred             cHHHHHHHHHhhhcccchhhhHHHhhhHHH---------------hHhhhHHHHHHHHHHHHHHHHhhHHHHHHHHh
Confidence            999999998887776411     1122332               12334567777778889999999999999996

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=99.21  E-value=1.1e-07  Score=94.14  Aligned_cols=440  Identities=15%  Similarity=0.141  Sum_probs=254.4

Q ss_pred             HHHHHHHhcCChHHHHHHHhhc--CCCCcchHHHHHHHHHhCCChhHHHHHHhhCCCCCcchHHHHHHHHHcCCChHHHH
Q 007573           55 AKISALSRAGKISAARQLFDQM--TTKDVITWNAIITGYWQNGFLQESKNLFQSMPVKNIVSWNCMIAGCIDNDRIDDAF  132 (597)
Q Consensus        55 ~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~  132 (597)
                      +.|+.|.+.|.+..|.+.-..-  ...|......+..++.+..-+++|-.+|+++..++.     .+..+-+.+-+..|.
T Consensus       620 aaiqlyika~~p~~a~~~a~n~~~l~~de~il~~ia~alik~elydkagdlfeki~d~dk-----ale~fkkgdaf~kai  694 (1636)
T KOG3616|consen  620 AAIQLYIKAGKPAKAARAALNDEELLADEEILEHIAAALIKGELYDKAGDLFEKIHDFDK-----ALECFKKGDAFGKAI  694 (1636)
T ss_pred             HHHHHHHHcCCchHHHHhhcCHHHhhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhCHHH-----HHHHHHcccHHHHHH
Confidence            4467777777777666543221  113444444455555555556666666666654321     111111111122222


Q ss_pred             HHHccCC-------------------CCCh--------hhHHHHHHHHHcCCChHHHHHHHccCCCCCch--hHHHHHHH
Q 007573          133 DYFQAMP-------------------ERNT--------ATYNAMISGFLKHGRLEEATRLFEQMPRRNVI--SYTAMLDG  183 (597)
Q Consensus       133 ~~~~~~~-------------------~~~~--------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~li~~  183 (597)
                      ++-+..-                   +-|.        ......+.+-.+...+.+|+.+++.+...++.  -|..+.+.
T Consensus       695 elarfafp~evv~lee~wg~hl~~~~q~daainhfiea~~~~kaieaai~akew~kai~ildniqdqk~~s~yy~~iadh  774 (1636)
T KOG3616|consen  695 ELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANCLIKAIEAAIGAKEWKKAISILDNIQDQKTASGYYGEIADH  774 (1636)
T ss_pred             HHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhHhHHHHhhhhccccccchHHHHH
Confidence            2221111                   0010        11112234555667788888888888765544  37788889


Q ss_pred             HHhCCChhHHHHHHHhcccCCcchHHHHHHHHHcCCChHHHHHHHhhcCCCCCCchHHHHHHHHHHhcCCHHHHHHHHhh
Q 007573          184 FMKKGEVDKARALSDYMSFKNVVSWTVMITGYVKNERFCEARELFYRMPDYDKNVFVVTAMITGFCKVGMLENARLLFER  263 (597)
Q Consensus       184 ~~~~g~~~~A~~~~~~m~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  263 (597)
                      |...|+++.|.++|-+.     ..++..+..|.+.|+++.|.++-.+...-......|.+-..-+-+.|++.+|.+++-.
T Consensus       775 yan~~dfe~ae~lf~e~-----~~~~dai~my~k~~kw~da~kla~e~~~~e~t~~~yiakaedldehgkf~eaeqlyit  849 (1636)
T KOG3616|consen  775 YANKGDFEIAEELFTEA-----DLFKDAIDMYGKAGKWEDAFKLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQLYIT  849 (1636)
T ss_pred             hccchhHHHHHHHHHhc-----chhHHHHHHHhccccHHHHHHHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhheeEE
Confidence            99999999999998654     4566778889999999999999888877444556677777778889999999999988


Q ss_pred             cCCCChhHHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhccchhHHHHHHHHHHHHhCCCCcccHHH
Q 007573          264 IQPKDCVSFNAMIAGYAQNGVAEEALRLFSGMIKMDMQPDDATLVSVFTACSALQLLNEGRQSHVLVIRNGFEANVSVCN  343 (597)
Q Consensus       264 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  343 (597)
                      +..|+.     .|..|-+.|..+..+++..+-...-+   ..|-..+..-+...|++..|+.-|-+..         -|.
T Consensus       850 i~~p~~-----aiqmydk~~~~ddmirlv~k~h~d~l---~dt~~~f~~e~e~~g~lkaae~~flea~---------d~k  912 (1636)
T KOG3616|consen  850 IGEPDK-----AIQMYDKHGLDDDMIRLVEKHHGDHL---HDTHKHFAKELEAEGDLKAAEEHFLEAG---------DFK  912 (1636)
T ss_pred             ccCchH-----HHHHHHhhCcchHHHHHHHHhChhhh---hHHHHHHHHHHHhccChhHHHHHHHhhh---------hHH
Confidence            888764     47788899999998888775432111   2334445556667788888877654432         356


Q ss_pred             HHHHHHHhcCCHHHHHHHHhccCCCChh-----hHHH------HHHHH-------------HHcCCHHHHHHHHHHHHHC
Q 007573          344 AVITMYSRCGGILDSELAFRQIHSPNLV-----SWNT------IIAAF-------------AQHGHYEKALIFFSQMGLN  399 (597)
Q Consensus       344 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~------li~~~-------------~~~g~~~~A~~~~~~m~~~  399 (597)
                      +-+++|...+.+++|.++-+.-...|..     .|..      .+..+             +..+.++-|.++-+-..+.
T Consensus       913 aavnmyk~s~lw~dayriaktegg~n~~k~v~flwaksiggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k~  992 (1636)
T KOG3616|consen  913 AAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLWAKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAKD  992 (1636)
T ss_pred             HHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHHHHhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhhc
Confidence            6778888888888888877654422221     2211      11222             2333344444443333222


Q ss_pred             CCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCC-------CCChHHH---------HHHHHHHhhcCCHHHHHHH
Q 007573          400 GFDPDGITFLSLLSACGHAGKVNESMDLFELMVKVYGI-------IPSSEHY---------TCLVDILSRAGQLEKAWQI  463 (597)
Q Consensus       400 g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-------~p~~~~~---------~~l~~~~~~~g~~~~A~~~  463 (597)
                      . .|.  ....+...+...|++++|-+.+-+.++....       .|+..-.         ..-+.++.+..+++.|.++
T Consensus       993 k-~~~--vhlk~a~~ledegk~edaskhyveaiklntynitwcqavpsrfd~e~ir~gnkpe~av~mfi~dndwa~aerv 1069 (1636)
T KOG3616|consen  993 K-MGE--VHLKLAMFLEDEGKFEDASKHYVEAIKLNTYNITWCQAVPSRFDAEFIRAGNKPEEAVEMFIHDNDWAAAERV 1069 (1636)
T ss_pred             c-Ccc--chhHHhhhhhhccchhhhhHhhHHHhhcccccchhhhcccchhhHHHHHcCCChHHHHHHhhhcccHHHHHHH
Confidence            1 222  2333444566789999998877776653111       1111000         0123344455555555555


Q ss_pred             HhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcHHHHHHHHH
Q 007573          464 TQGMPFEADTGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRVRLL  532 (597)
Q Consensus       464 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~  532 (597)
                      -+.--...-+.++..-..+....|++.+|+.++-++  ..|+      ..++-|...+.|.+|+++-+.
T Consensus      1070 ae~h~~~~l~dv~tgqar~aiee~d~~kae~fllra--nkp~------i~l~yf~e~~lw~dalri~kd 1130 (1636)
T KOG3616|consen 1070 AEAHCEDLLADVLTGQARGAIEEGDFLKAEGFLLRA--NKPD------IALNYFIEAELWPDALRIAKD 1130 (1636)
T ss_pred             HHhhChhhhHHHHhhhhhccccccchhhhhhheeec--CCCc------hHHHHHHHhccChHHHHHHHh
Confidence            443321111334555555666778888888776443  2232      234556667777777766543

>PF13041 PPR_2: PPR repeat family

Probab=99.19  E-value=6.5e-11  Score=78.46  Aligned_cols=50  Identities=36%  Similarity=0.604  Sum_probs=47.3

Q ss_pred             CChhHHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhc
Q 007573          267 KDCVSFNAMIAGYAQNGVAEEALRLFSGMIKMDMQPDDATLVSVFTACSA  316 (597)
Q Consensus       267 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~  316 (597)
                      ||+.+||++|.+|++.|++++|.++|++|.+.|++||..||+.++.+|++
T Consensus         1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k   50 (50)
T PF13041_consen    1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK   50 (50)
T ss_pred             CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence            68899999999999999999999999999999999999999999999874

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.19  E-value=6.9e-10  Score=99.12  Aligned_cols=230  Identities=14%  Similarity=0.116  Sum_probs=179.4

Q ss_pred             HHHHHHHHhcCCHHHHHHHHhhcCC--CChhHHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCHHHHHH-HHHHHhccc
Q 007573          242 TAMITGFCKVGMLENARLLFERIQP--KDCVSFNAMIAGYAQNGVAEEALRLFSGMIKMDMQPDDATLVS-VFTACSALQ  318 (597)
Q Consensus       242 ~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~-ll~~~~~~~  318 (597)
                      +-+..+|.+.|.+.+|.+.|+...+  +-+.||-.|-++|.+..++..|+.++.+-.+.  .|-.+|+.. ..+.+...+
T Consensus       227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~eam~  304 (478)
T KOG1129|consen  227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHEAME  304 (478)
T ss_pred             HHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHHHHH
Confidence            6789999999999999999988654  57789999999999999999999999987764  677777643 223333344


Q ss_pred             hhHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHhccCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 007573          319 LLNEGRQSHVLVIRNGFEANVSVCNAVITMYSRCGGILDSELAFRQIHSPNLVSWNTIIAAFAQHGHYEKALIFFSQMGL  398 (597)
Q Consensus       319 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  398 (597)
                      ..+.+.++++.+.+..                                +.++.+...+..+|.-.++++-|+.+++++.+
T Consensus       305 ~~~~a~~lYk~vlk~~--------------------------------~~nvEaiAcia~~yfY~~~PE~AlryYRRiLq  352 (478)
T KOG1129|consen  305 QQEDALQLYKLVLKLH--------------------------------PINVEAIACIAVGYFYDNNPEMALRYYRRILQ  352 (478)
T ss_pred             hHHHHHHHHHHHHhcC--------------------------------CccceeeeeeeeccccCCChHHHHHHHHHHHH
Confidence            4444444444443332                                34555666666778888999999999999998


Q ss_pred             CCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC--hHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCC-CHH
Q 007573          399 NGFDPDGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPS--SEHYTCLVDILSRAGQLEKAWQITQGMP-FEA-DTG  474 (597)
Q Consensus       399 ~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~  474 (597)
                      -| ..++..|..+.-+|.-.+++|-++.-|.+.... -..|+  ..+|-.+.......|++.-|.+.|+-.. ..| +..
T Consensus       353 mG-~~speLf~NigLCC~yaqQ~D~~L~sf~RAlst-at~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~e  430 (478)
T KOG1129|consen  353 MG-AQSPELFCNIGLCCLYAQQIDLVLPSFQRALST-ATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGE  430 (478)
T ss_pred             hc-CCChHHHhhHHHHHHhhcchhhhHHHHHHHHhh-ccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHH
Confidence            88 456778888888888999999999988888764 34454  5678888888889999999999998765 444 456


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 007573          475 VWGSLLAACVINLNVELGELAAKKMRELDPQNS  507 (597)
Q Consensus       475 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~  507 (597)
                      .++.|.-.-.+.|++++|..++..+....|.-.
T Consensus       431 alnNLavL~~r~G~i~~Arsll~~A~s~~P~m~  463 (478)
T KOG1129|consen  431 ALNNLAVLAARSGDILGARSLLNAAKSVMPDMA  463 (478)
T ss_pred             HHHhHHHHHhhcCchHHHHHHHHHhhhhCcccc
Confidence            889888888899999999999999999888753

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.17  E-value=3.2e-07  Score=85.11  Aligned_cols=408  Identities=11%  Similarity=-0.012  Sum_probs=251.3

Q ss_pred             ChhhHHHHHHHHHcCCChHHHHHHHccCCCC-CchhHHHHHHHHHhCC-ChhHHHHHHHhcccCCcchHHHHHHHHHcCC
Q 007573          142 NTATYNAMISGFLKHGRLEEATRLFEQMPRR-NVISYTAMLDGFMKKG-EVDKARALSDYMSFKNVVSWTVMITGYVKNE  219 (597)
Q Consensus       142 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~~~~~ll~~~~~~g  219 (597)
                      +...-...+..|...++.+.|...+.+.+.. ...--+.|+.-+.+.| +..++.--+...+..-+..... |.+..+.+
T Consensus        96 ~~e~~r~~aecy~~~~n~~~Ai~~l~~~p~t~r~p~inlMla~l~~~g~r~~~~vl~ykevvrecp~aL~~-i~~ll~l~  174 (564)
T KOG1174|consen   96 DAEQRRRAAECYRQIGNTDMAIETLLQVPPTLRSPRINLMLARLQHHGSRHKEAVLAYKEVIRECPMALQV-IEALLELG  174 (564)
T ss_pred             cHHHHHHHHHHHHHHccchHHHHHHhcCCccccchhHHHHHHHHHhccccccHHHHhhhHHHHhcchHHHH-HHHHHHHh
Confidence            4455556788888999999999999888753 3333444444444443 3323222222221111111111 11111111


Q ss_pred             ChHHHHHHHhhcC--CCCCCchHHHHHHHHHH--hcCCHHHHHHHHhhcC-----CCChhHHHHHHHHHHHcCChhHHHH
Q 007573          220 RFCEARELFYRMP--DYDKNVFVVTAMITGFC--KVGMLENARLLFERIQ-----PKDCVSFNAMIAGYAQNGVAEEALR  290 (597)
Q Consensus       220 ~~~~a~~~~~~~~--~~~~~~~~~~~l~~~~~--~~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~  290 (597)
                       +..+...-..|.  ...|.......-+.+++  -.++...|...+-.+.     +.|+.....+.+.+...|+.++|+.
T Consensus       175 -v~g~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~  253 (564)
T KOG1174|consen  175 -VNGNEINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAED  253 (564)
T ss_pred             -hcchhhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHH
Confidence             001111111111  12333333333344433  3455555554443322     3477888999999999999999999


Q ss_pred             HHHHhHHCCCCCCHHHHHHH-HHHHhccchhHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHhccCC--
Q 007573          291 LFSGMIKMDMQPDDATLVSV-FTACSALQLLNEGRQSHVLVIRNGFEANVSVCNAVITMYSRCGGILDSELAFRQIHS--  367 (597)
Q Consensus       291 ~~~~m~~~g~~p~~~~~~~l-l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--  367 (597)
                      .|++.+-  +.|+..+-.-+ .-.+...|+.+....+...+.... ..+...|-.-.......++++.|..+-++...  
T Consensus       254 ~Fe~~~~--~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~  330 (564)
T KOG1174|consen  254 IFSSTLC--ANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE  330 (564)
T ss_pred             HHHHHhh--CChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC
Confidence            9998765  34544331111 112345677777766665554432 12222333333444556778888887777663  


Q ss_pred             -CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHH
Q 007573          368 -PNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTC  446 (597)
Q Consensus       368 -~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~  446 (597)
                       .+...+-.-...+...|++++|.-.|+..+... +-+-..|..++.+|...|...+|.-.-+...+.  +.-+..+...
T Consensus       331 ~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~--~~~sA~~LtL  407 (564)
T KOG1174|consen  331 PRNHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL--FQNSARSLTL  407 (564)
T ss_pred             cccchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH--hhcchhhhhh
Confidence             344444444466778899999999999887642 345678999999999999999988777766653  3334445444


Q ss_pred             HH-HHHh-hcCCHHHHHHHHhhCC-CCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCC
Q 007573          447 LV-DILS-RAGQLEKAWQITQGMP-FEADT-GVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGM  522 (597)
Q Consensus       447 l~-~~~~-~~g~~~~A~~~~~~~~-~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~  522 (597)
                      +. ..+. .-..-++|.+++++.. .+|+- ...+.+...|...|..+.++.++++.+...|+ ......|++.+...+.
T Consensus       408 ~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D-~~LH~~Lgd~~~A~Ne  486 (564)
T KOG1174|consen  408 FGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPD-VNLHNHLGDIMRAQNE  486 (564)
T ss_pred             hcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccc-cHHHHHHHHHHHHhhh
Confidence            42 2332 2234578888888765 77764 46677778888999999999999999988887 4557889999999999


Q ss_pred             cHHHHHHHHHHHhCCCccCCCeeEEEECCEEEEEEeCCCCCcchHHHHHHHHHHHHHHhhcC
Q 007573          523 WRDVTRVRLLMKEQGVTKQCAYSWIEIGNKVHYFLGGDMSHPCIDKIHLELKRASVQMKSVD  584 (597)
Q Consensus       523 ~~~A~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~  584 (597)
                      +++|.+.|.....                          .+|+.+...+-+++|.++++.++
T Consensus       487 ~Q~am~~y~~ALr--------------------------~dP~~~~sl~Gl~~lEK~~~~~D  522 (564)
T KOG1174|consen  487 PQKAMEYYYKALR--------------------------QDPKSKRTLRGLRLLEKSDDESD  522 (564)
T ss_pred             HHHHHHHHHHHHh--------------------------cCccchHHHHHHHHHHhccCCCC
Confidence            9999998887654                          36777788888888888777544

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.17  E-value=2e-08  Score=95.44  Aligned_cols=203  Identities=11%  Similarity=-0.013  Sum_probs=131.8

Q ss_pred             HHHHHHHHhccchhHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHhccC---CCChhhHHHHHHHHHHc
Q 007573          307 LVSVFTACSALQLLNEGRQSHVLVIRNGFEANVSVCNAVITMYSRCGGILDSELAFRQIH---SPNLVSWNTIIAAFAQH  383 (597)
Q Consensus       307 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~  383 (597)
                      |......+...|+.+.|...+...++.. +.+...++.+...+...|++++|...|+...   +.+..+|..+...+...
T Consensus        67 ~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~  145 (296)
T PRK11189         67 HYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYG  145 (296)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Confidence            3333444455555555555555555543 4456677778888888888888888888775   34466788888888899


Q ss_pred             CCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCH--HHHH
Q 007573          384 GHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQL--EKAW  461 (597)
Q Consensus       384 g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~--~~A~  461 (597)
                      |++++|++.|++..+.  .|+..........+...++.++|.+.+.....  ...|+...+ .+...+  .|+.  +++.
T Consensus       146 g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~--~~~~~~~~~-~~~~~~--lg~~~~~~~~  218 (296)
T PRK11189        146 GRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYE--KLDKEQWGW-NIVEFY--LGKISEETLM  218 (296)
T ss_pred             CCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHh--hCCccccHH-HHHHHH--ccCCCHHHHH
Confidence            9999999999998875  45543222222334556789999999977654  333433222 333333  4443  3333


Q ss_pred             HHHhhC-C----CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-CchHHHHHHHH
Q 007573          462 QITQGM-P----FEA-DTGVWGSLLAACVINLNVELGELAAKKMRELDPQN-SAVYVMLSNLY  517 (597)
Q Consensus       462 ~~~~~~-~----~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~  517 (597)
                      +.+.+. .    ..| ....|..++..+...|++++|+..|+++++.+|.+ ......++...
T Consensus       219 ~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e~~~~~~e~~  281 (296)
T PRK11189        219 ERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFVEHRYALLELA  281 (296)
T ss_pred             HHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence            333321 1    112 34578999999999999999999999999999865 44444444443

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.15  E-value=6.1e-08  Score=87.52  Aligned_cols=308  Identities=15%  Similarity=0.103  Sum_probs=168.1

Q ss_pred             HHHHHHHHhCCChhHHHHHHHhcccCCcchHHHHH---HHHHcCCChHHHHHHHhhcCCCCCCchHH-HHHHHHHHhcCC
Q 007573          178 TAMLDGFMKKGEVDKARALSDYMSFKNVVSWTVMI---TGYVKNERFCEARELFYRMPDYDKNVFVV-TAMITGFCKVGM  253 (597)
Q Consensus       178 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ll---~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~  253 (597)
                      ..+.+.+...|++..|+.-|...+.-|+..|.++.   ..|...|+-.-|+.-+...++++||.... .--...+.+.|.
T Consensus        42 lElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Ge  121 (504)
T KOG0624|consen   42 LELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGE  121 (504)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhccc
Confidence            34566666777777777777777766666555543   45677777777777777777777775432 233456677788


Q ss_pred             HHHHHHHHhhcCCCChhHHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhccchhHHHHHHHHHHHHh
Q 007573          254 LENARLLFERIQPKDCVSFNAMIAGYAQNGVAEEALRLFSGMIKMDMQPDDATLVSVFTACSALQLLNEGRQSHVLVIRN  333 (597)
Q Consensus       254 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~  333 (597)
                      ++.|..-|+.+...++.- +....++.+.-..++-..                ....+..+...|+...+......+++.
T Consensus       122 le~A~~DF~~vl~~~~s~-~~~~eaqskl~~~~e~~~----------------l~~ql~s~~~~GD~~~ai~~i~~llEi  184 (504)
T KOG0624|consen  122 LEQAEADFDQVLQHEPSN-GLVLEAQSKLALIQEHWV----------------LVQQLKSASGSGDCQNAIEMITHLLEI  184 (504)
T ss_pred             HHHHHHHHHHHHhcCCCc-chhHHHHHHHHhHHHHHH----------------HHHHHHHHhcCCchhhHHHHHHHHHhc
Confidence            888888777766543310 000001111000011111                111222333445555555555555554


Q ss_pred             CCCCcccHHHHHHHHHHhcCCHHHHHHHHhccC---CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHH-HH
Q 007573          334 GFEANVSVCNAVITMYSRCGGILDSELAFRQIH---SPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGIT-FL  409 (597)
Q Consensus       334 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~-~~  409 (597)
                      . +.+...+..-..+|...|++..|+.-++...   ..+....--+-..+...|+.+.++...++-.+.  .||... |.
T Consensus       185 ~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~  261 (504)
T KOG0624|consen  185 Q-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFP  261 (504)
T ss_pred             C-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHH
Confidence            3 4555666666666777777776665554433   455555555566666677777777666666543  555331 11


Q ss_pred             ---HH---------HHHHhccCcHHHHHHHHHHhHHhcCCCCC--h---HHHHHHHHHHhhcCCHHHHHHHHhhCC-CCC
Q 007573          410 ---SL---------LSACGHAGKVNESMDLFELMVKVYGIIPS--S---EHYTCLVDILSRAGQLEKAWQITQGMP-FEA  471 (597)
Q Consensus       410 ---~l---------l~~~~~~g~~~~a~~~~~~~~~~~~~~p~--~---~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p  471 (597)
                         .+         +......+++.++.+..+...+.   .|.  .   ..+..+-..+...|++-+|++...+.. +.|
T Consensus       262 ~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~---ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~  338 (504)
T KOG0624|consen  262 FYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKN---EPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDP  338 (504)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc---CCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCc
Confidence               11         11122344555555555554432   222  1   122233344455566667766666554 444


Q ss_pred             C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 007573          472 D-TGVWGSLLAACVINLNVELGELAAKKMRELDPQNSA  508 (597)
Q Consensus       472 ~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~  508 (597)
                      | +.++.--..+|.....++.|+.-|+++.+.++++..
T Consensus       339 ~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~  376 (504)
T KOG0624|consen  339 DDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTR  376 (504)
T ss_pred             hHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHH
Confidence            4 556666666666666677777777777777766544

>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]

Probab=99.13  E-value=4e-09  Score=106.30  Aligned_cols=271  Identities=14%  Similarity=0.125  Sum_probs=192.9

Q ss_pred             HHHHHhHHCCCCCCHHHHHHHHHHHhccchhHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHhccCCCC
Q 007573          290 RLFSGMIKMDMQPDDATLVSVFTACSALQLLNEGRQSHVLVIRNGFEANVSVCNAVITMYSRCGGILDSELAFRQIHSPN  369 (597)
Q Consensus       290 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  369 (597)
                      .++-.+...|+.|+.+||..++..||..|+.+.|- ++..|.-...+.+..+++.++.+....++.+.+.       .|.
T Consensus        11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~   82 (1088)
T KOG4318|consen   11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPL   82 (1088)
T ss_pred             hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCc
Confidence            45677888999999999999999999999999999 9999998888999999999999999999887775       788


Q ss_pred             hhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHH
Q 007573          370 LVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVD  449 (597)
Q Consensus       370 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~  449 (597)
                      ..+|+.+..+|..+|+... .+..++           -...+...++..|....-..++..+.-..+.-||..   ..+.
T Consensus        83 aDtyt~Ll~ayr~hGDli~-fe~veq-----------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~---n~il  147 (1088)
T KOG4318|consen   83 ADTYTNLLKAYRIHGDLIL-FEVVEQ-----------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAE---NAIL  147 (1088)
T ss_pred             hhHHHHHHHHHHhccchHH-HHHHHH-----------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHH---HHHH
Confidence            8999999999999999876 222222           122234455566665555666555432224445543   3556


Q ss_pred             HHhhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcHHHHH
Q 007573          450 ILSRAGQLEKAWQITQGMPFEADTGVWGSLLAACVINL-NVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTR  528 (597)
Q Consensus       450 ~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~  528 (597)
                      .+.-.|-++.+.+++..++...-......++.-+.... .+++-....+...+ .| ++.+|..+..+-...|+.+-|..
T Consensus       148 llv~eglwaqllkll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e-~~-~s~~l~a~l~~alaag~~d~Ak~  225 (1088)
T KOG4318|consen  148 LLVLEGLWAQLLKLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVE-AP-TSETLHAVLKRALAAGDVDGAKN  225 (1088)
T ss_pred             HHHHHHHHHHHHHHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhc-CC-ChHHHHHHHHHHHhcCchhhHHH
Confidence            66778889999999988871111111111355554433 34444444444444 34 47889999999999999999999


Q ss_pred             HHHHHHhCCCccCCCeeEEEECCEEEEEEeCCCCCcchHHHHHHHHHHHHHHhhcCCccchhcccccC
Q 007573          529 VRLLMKEQGVTKQCAYSWIEIGNKVHYFLGGDMSHPCIDKIHLELKRASVQMKSVDDFVEIATSWSSF  596 (597)
Q Consensus       529 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  596 (597)
                      ++..|+++|..-.+.+-|..        +.|   -...+-+...++.|+.....+|..+....-.+|+
T Consensus       226 ll~emke~gfpir~HyFwpL--------l~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l  282 (1088)
T KOG4318|consen  226 LLYEMKEKGFPIRAHYFWPL--------LLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQL  282 (1088)
T ss_pred             HHHHHHHcCCCcccccchhh--------hhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhh
Confidence            99999999998888877774        333   2233445566777777777777766555544444

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=99.13  E-value=5.8e-07  Score=89.17  Aligned_cols=424  Identities=15%  Similarity=0.113  Sum_probs=244.1

Q ss_pred             CChHHHHHHHhhcCCCCcchHHHHHHHHHhCCChhHHHHHHhhCCCCC-cchHHHHHHHHHcCCChHHHHHHHccCCCCC
Q 007573           64 GKISAARQLFDQMTTKDVITWNAIITGYWQNGFLQESKNLFQSMPVKN-IVSWNCMIAGCIDNDRIDDAFDYFQAMPERN  142 (597)
Q Consensus        64 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~  142 (597)
                      .++.+|..+|-+-..     -..-|..|....++++|+.+-+....|- ...-.+.++++...|+-+.|-++-    +.+
T Consensus       545 kkfk~ae~ifleqn~-----te~aigmy~~lhkwde~i~lae~~~~p~~eklk~sy~q~l~dt~qd~ka~elk----~sd  615 (1636)
T KOG3616|consen  545 KKFKEAEMIFLEQNA-----TEEAIGMYQELHKWDEAIALAEAKGHPALEKLKRSYLQALMDTGQDEKAAELK----ESD  615 (1636)
T ss_pred             hhhhHHHHHHHhccc-----HHHHHHHHHHHHhHHHHHHHHHhcCChHHHHHHHHHHHHHHhcCchhhhhhhc----ccc
Confidence            456777777643221     2334566777778888887776655441 122334555556666666555432    222


Q ss_pred             hhhHHHHHHHHHcCCChHHHHHHHcc--CCCCCchhHHHHHHHHHhCCChhHHHHHHHhcccCCc---------------
Q 007573          143 TATYNAMISGFLKHGRLEEATRLFEQ--MPRRNVISYTAMLDGFMKKGEVDKARALSDYMSFKNV---------------  205 (597)
Q Consensus       143 ~~~~~~l~~~~~~~g~~~~A~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~---------------  205 (597)
                      ... .+.|+.|.+.|.+..|.+....  ....|......+..++.+..-+++|-++|+++..++.               
T Consensus       616 gd~-laaiqlyika~~p~~a~~~a~n~~~l~~de~il~~ia~alik~elydkagdlfeki~d~dkale~fkkgdaf~kai  694 (1636)
T KOG3616|consen  616 GDG-LAAIQLYIKAGKPAKAARAALNDEELLADEEILEHIAAALIKGELYDKAGDLFEKIHDFDKALECFKKGDAFGKAI  694 (1636)
T ss_pred             Ccc-HHHHHHHHHcCCchHHHHhhcCHHHhhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHH
Confidence            222 2356778888887777665422  1123444444455555555455555555554433321               


Q ss_pred             -----------chH-HHHHHHHHcCCChHHHHHHHhhcCCCCCCchHHHHHHHHHHhcCCHHHHHHHHhhcCCCChh--H
Q 007573          206 -----------VSW-TVMITGYVKNERFCEARELFYRMPDYDKNVFVVTAMITGFCKVGMLENARLLFERIQPKDCV--S  271 (597)
Q Consensus       206 -----------~~~-~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~  271 (597)
                                 ++. .....-+...|+++.|..-|-++..       ..--+.+......+.+|+.+++.+...++.  -
T Consensus       695 elarfafp~evv~lee~wg~hl~~~~q~daainhfiea~~-------~~kaieaai~akew~kai~ildniqdqk~~s~y  767 (1636)
T KOG3616|consen  695 ELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANC-------LIKAIEAAIGAKEWKKAISILDNIQDQKTASGY  767 (1636)
T ss_pred             HHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhh-------HHHHHHHHhhhhhhhhhHhHHHHhhhhcccccc
Confidence                       111 1112222233444444433332211       112234455566777777777777665443  4


Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhccchhHHHHHHHHHHHHhCCCCcccHHHHHHHHHHh
Q 007573          272 FNAMIAGYAQNGVAEEALRLFSGMIKMDMQPDDATLVSVFTACSALQLLNEGRQSHVLVIRNGFEANVSVCNAVITMYSR  351 (597)
Q Consensus       272 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  351 (597)
                      |..+...|...|+++.|.++|.+.-         .+.-.|..|.+.|+++.|.++-.+.  .|....+..|-+-..-+-+
T Consensus       768 y~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~da~kla~e~--~~~e~t~~~yiakaedlde  836 (1636)
T KOG3616|consen  768 YGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWEDAFKLAEEC--HGPEATISLYIAKAEDLDE  836 (1636)
T ss_pred             chHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHHHHHHHHHh--cCchhHHHHHHHhHHhHHh
Confidence            6667777888888888888775432         2344566777888888777664433  2334445556666666677


Q ss_pred             cCCHHHHHHHHhccCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHh
Q 007573          352 CGGILDSELAFRQIHSPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFELM  431 (597)
Q Consensus       352 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~  431 (597)
                      .|++.+|++++-.+..|+..     |..|-++|..+..+++..+-..   ..-..|...+..-+...|++..|...|-+.
T Consensus       837 hgkf~eaeqlyiti~~p~~a-----iqmydk~~~~ddmirlv~k~h~---d~l~dt~~~f~~e~e~~g~lkaae~~flea  908 (1636)
T KOG3616|consen  837 HGKFAEAEQLYITIGEPDKA-----IQMYDKHGLDDDMIRLVEKHHG---DHLHDTHKHFAKELEAEGDLKAAEEHFLEA  908 (1636)
T ss_pred             hcchhhhhheeEEccCchHH-----HHHHHhhCcchHHHHHHHHhCh---hhhhHHHHHHHHHHHhccChhHHHHHHHhh
Confidence            88888888888777777643     6677888888888877765421   112456677777888889999988877654


Q ss_pred             HHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCCCCCCH-----HHHHH------HHHHHHhcC-------------
Q 007573          432 VKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMPFEADT-----GVWGS------LLAACVINL-------------  487 (597)
Q Consensus       432 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~-----~~~~~------l~~~~~~~g-------------  487 (597)
                      .          -|.+-+++|...+-+++|.++-+.-. ..+.     ..|.-      -...+.++|             
T Consensus       909 ~----------d~kaavnmyk~s~lw~dayriakteg-g~n~~k~v~flwaksiggdaavkllnk~gll~~~id~a~d~~  977 (1636)
T KOG3616|consen  909 G----------DFKAAVNMYKASELWEDAYRIAKTEG-GANAEKHVAFLWAKSIGGDAAVKLLNKHGLLEAAIDFAADNC  977 (1636)
T ss_pred             h----------hHHHHHHHhhhhhhHHHHHHHHhccc-cccHHHHHHHHHHHhhCcHHHHHHHHhhhhHHHHhhhhhccc
Confidence            3          25566778888888888887765432 0111     11111      111122333             


Q ss_pred             CHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHhC
Q 007573          488 NVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRVRLLMKEQ  536 (597)
Q Consensus       488 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  536 (597)
                      .++-|..+.+-..+  ..-+.+...++..+...|++++|.+-|-+..+.
T Consensus       978 afd~afdlari~~k--~k~~~vhlk~a~~ledegk~edaskhyveaikl 1024 (1636)
T KOG3616|consen  978 AFDFAFDLARIAAK--DKMGEVHLKLAMFLEDEGKFEDASKHYVEAIKL 1024 (1636)
T ss_pred             chhhHHHHHHHhhh--ccCccchhHHhhhhhhccchhhhhHhhHHHhhc
Confidence            44444444333322  222667788888899999999998877766653

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=99.11  E-value=1.3e-07  Score=94.53  Aligned_cols=392  Identities=9%  Similarity=0.053  Sum_probs=220.3

Q ss_pred             CcchHHHHHHHHHcCCChHHHHHHHccCCCC---ChhhHHHHHHHHHcCCChHHHHHHHccCCC----C-CchhHHHHHH
Q 007573          111 NIVSWNCMIAGCIDNDRIDDAFDYFQAMPER---NTATYNAMISGFLKHGRLEEATRLFEQMPR----R-NVISYTAMLD  182 (597)
Q Consensus       111 ~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~-~~~~~~~li~  182 (597)
                      |...|..|--+..+.|+++.+.+.|++..+-   ....|..+...|...|.-..|..++++-..    | |+..+-...+
T Consensus       322 d~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmask  401 (799)
T KOG4162|consen  322 DAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMASK  401 (799)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHHH
Confidence            4455555555666666666666666666532   345566666666666666666666665432    2 2222333333


Q ss_pred             HHHh-CCChhHHHHHHHhccc--------CCcchHHHHHHHHHcC-----------CChHHHHHHHhhcCCCCC-CchHH
Q 007573          183 GFMK-KGEVDKARALSDYMSF--------KNVVSWTVMITGYVKN-----------ERFCEARELFYRMPDYDK-NVFVV  241 (597)
Q Consensus       183 ~~~~-~g~~~~A~~~~~~m~~--------~~~~~~~~ll~~~~~~-----------g~~~~a~~~~~~~~~~~~-~~~~~  241 (597)
                      .|.+ .+..++++++..+...        .....|..+.-+|...           ....++.+.++++.+++| |..+.
T Consensus       402 lc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~i  481 (799)
T KOG4162|consen  402 LCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLVI  481 (799)
T ss_pred             HHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchHH
Confidence            3333 3455555555444421        1223343333333321           123456666666665444 22333


Q ss_pred             HHHHHHHHhcCCHHHHHHHHhhcC----CCChhHHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCHH-HHHHHHHHHhc
Q 007573          242 TAMITGFCKVGMLENARLLFERIQ----PKDCVSFNAMIAGYAQNGVAEEALRLFSGMIKMDMQPDDA-TLVSVFTACSA  316 (597)
Q Consensus       242 ~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~  316 (597)
                      .-+.--|+..++++.|.+...+..    ..+...|..+.-.+...+++.+|+.+.+.....  .|+.. ....-+..-..
T Consensus       482 f~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E--~~~N~~l~~~~~~i~~~  559 (799)
T KOG4162|consen  482 FYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEE--FGDNHVLMDGKIHIELT  559 (799)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH--hhhhhhhchhhhhhhhh
Confidence            334444566667777766665533    345667777777777777777777777665442  11100 00000000000


Q ss_pred             cchhHHHHHH-------HH----------HHH----HhCC-------CCcccHHHHHHHHHHhcCC---HHHHHHHHhcc
Q 007573          317 LQLLNEGRQS-------HV----------LVI----RNGF-------EANVSVCNAVITMYSRCGG---ILDSELAFRQI  365 (597)
Q Consensus       317 ~~~~~~a~~~-------~~----------~~~----~~~~-------~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~  365 (597)
                      .++.+++...       ++          +..    +.|.       ...+.++..+.......+.   .+.....+...
T Consensus       560 ~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~  639 (799)
T KOG4162|consen  560 FNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVL  639 (799)
T ss_pred             cccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCccccc
Confidence            1111111111       11          110    1111       1112233333322221111   11111111111


Q ss_pred             CCCC------hhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC
Q 007573          366 HSPN------LVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIP  439 (597)
Q Consensus       366 ~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p  439 (597)
                      ..|+      ...|......+.+.++.++|...+.+.... .+.....|......+...|..++|.+.|....   -+.|
T Consensus       640 ~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~-~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al---~ldP  715 (799)
T KOG4162|consen  640 PGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI-DPLSASVYYLRGLLLEVKGQLEEAKEAFLVAL---ALDP  715 (799)
T ss_pred             CCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc-chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHH---hcCC
Confidence            1222      224666677788899999999888887653 23345566666677788899999999998876   5667


Q ss_pred             C-hHHHHHHHHHHhhcCCHHHHHH--HHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 007573          440 S-SEHYTCLVDILSRAGQLEKAWQ--ITQGMP-FEA-DTGVWGSLLAACVINLNVELGELAAKKMRELDPQNSA  508 (597)
Q Consensus       440 ~-~~~~~~l~~~~~~~g~~~~A~~--~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~  508 (597)
                      + +....++..++.+.|+..-|.+  ++..+. ..| +...|..++....+.|+.++|.+.|.-+.++++.+|.
T Consensus       716 ~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV  789 (799)
T KOG4162|consen  716 DHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPV  789 (799)
T ss_pred             CCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence            6 7788999999999998777776  777665 556 5789999999999999999999999999999887653

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=99.09  E-value=1.8e-07  Score=95.87  Aligned_cols=130  Identities=11%  Similarity=0.063  Sum_probs=73.6

Q ss_pred             hHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHH----HHHHHHhhcCCHHHHHHHHhhCCCCCCHHHHHHHH
Q 007573          405 GITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYT----CLVDILSRAGQLEKAWQITQGMPFEADTGVWGSLL  480 (597)
Q Consensus       405 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~----~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~  480 (597)
                      ...|........+.+..+.|.+...+.+.-...+.+...|+    .+...+...|.++.|..-+.......+..+...-+
T Consensus       967 ~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a~~~~~~evdEdi~gt~l 1046 (1238)
T KOG1127|consen  967 CFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKASWKEWMEVDEDIRGTDL 1046 (1238)
T ss_pred             hHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhhhcccchhHHHHHhhhhH
Confidence            44555555555566666666555554432211223333344    23445556677776666665544333333332222


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhcCCCC---CchHHHHHHHHHhcCCcHHHHHHHHHHHh
Q 007573          481 AACVINLNVELGELAAKKMRELDPQN---SAVYVMLSNLYAAAGMWRDVTRVRLLMKE  535 (597)
Q Consensus       481 ~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  535 (597)
                      .. .-.|+++++.+.|++++.+.-.+   ......++.....++.-+.|...+-+...
T Consensus      1047 ~l-Ffkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe~~~ 1103 (1238)
T KOG1127|consen 1047 TL-FFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFEVKS 1103 (1238)
T ss_pred             HH-HHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHHHHHHHH
Confidence            22 33578899999999998875443   34455667777777888888776555543

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=99.08  E-value=1.4e-06  Score=85.58  Aligned_cols=409  Identities=13%  Similarity=0.110  Sum_probs=241.3

Q ss_pred             chHHHHHHHHHhcCChHHHHHHHhhcCCC---CcchHHHHHHHHHhCCChhHHHHHHhhCCCC---CcchHHHHHHHHHc
Q 007573           51 FVNNAKISALSRAGKISAARQLFDQMTTK---DVITWNAIITGYWQNGFLQESKNLFQSMPVK---NIVSWNCMIAGCID  124 (597)
Q Consensus        51 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~  124 (597)
                      ..|-.++..| ..+++...++..+.+.+.   ...|.....-.+...|+-++|....+.....   +.+.|..+.-.+-.
T Consensus         9 ~lF~~~lk~y-E~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~   87 (700)
T KOG1156|consen    9 ALFRRALKCY-ETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRS   87 (700)
T ss_pred             HHHHHHHHHH-HHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhh
Confidence            3456677766 455666666666665542   2223443344456679999999998888764   67889999888888


Q ss_pred             CCChHHHHHHHccCC---CCChhhHHHHHHHHHcCCChHHHHHHHccCCC---CCchhHHHHHHHHHhCCChhHHHHHHH
Q 007573          125 NDRIDDAFDYFQAMP---ERNTATYNAMISGFLKHGRLEEATRLFEQMPR---RNVISYTAMLDGFMKKGEVDKARALSD  198 (597)
Q Consensus       125 ~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~  198 (597)
                      ..++++|++.+....   +.|...+.-|.-.-...|+++.....-....+   .....|..++.++.-.|+...|..+++
T Consensus        88 dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~  167 (700)
T KOG1156|consen   88 DKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILE  167 (700)
T ss_pred             hhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            889999999999887   45667777666666677777777766555543   345578999999999999999999988


Q ss_pred             hcc-----cCCcchHHHH------HHHHHcCCChHHHHHHHhhcCCCCCCc-hHHHHHHHHHHhcCCHHHHHHHHhhcCC
Q 007573          199 YMS-----FKNVVSWTVM------ITGYVKNERFCEARELFYRMPDYDKNV-FVVTAMITGFCKVGMLENARLLFERIQP  266 (597)
Q Consensus       199 ~m~-----~~~~~~~~~l------l~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~  266 (597)
                      ...     .|+...+...      .....+.|.+++|.+.+..-....-|- ..-..-...+.+.+++++|..++..+..
T Consensus       168 ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~  247 (700)
T KOG1156|consen  168 EFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLE  247 (700)
T ss_pred             HHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHh
Confidence            772     2454444322      234567888888888887665422222 2334557788999999999999999876


Q ss_pred             C--ChhHHH-HHHHHHHHcCChhHHH-HHHHHhHHCCCCCCHHHHHHHHHHHhccchhHHHHHHHHHHHHhCCCCcccHH
Q 007573          267 K--DCVSFN-AMIAGYAQNGVAEEAL-RLFSGMIKMDMQPDDATLVSVFTACSALQLLNEGRQSHVLVIRNGFEANVSVC  342 (597)
Q Consensus       267 ~--~~~~~~-~li~~~~~~g~~~~A~-~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  342 (597)
                      +  |...|+ .+..++.+-.+.-+++ .+|....+. .+-.......-++......-.+....++...++.|+++   ++
T Consensus       248 rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~-y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~---vf  323 (700)
T KOG1156|consen  248 RNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEK-YPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPS---VF  323 (700)
T ss_pred             hCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc-CcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCc---hh
Confidence            4  334444 4445554333444444 666655442 11111111222233333444556666777777888654   44


Q ss_pred             HHHHHHHHhcCCHHHHHHH----HhccC--------------CCChhhHH--HHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 007573          343 NAVITMYSRCGGILDSELA----FRQIH--------------SPNLVSWN--TIIAAFAQHGHYEKALIFFSQMGLNGFD  402 (597)
Q Consensus       343 ~~l~~~~~~~g~~~~A~~~----~~~~~--------------~~~~~~~~--~li~~~~~~g~~~~A~~~~~~m~~~g~~  402 (597)
                      ..+...|-.-...+-.+++    ...+.              +|....|.  .++..+-..|+++.|..+++.....  .
T Consensus       324 ~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--T  401 (700)
T KOG1156|consen  324 KDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--T  401 (700)
T ss_pred             hhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--C
Confidence            5555555332221111111    11111              12222222  3444555566666666666665543  4


Q ss_pred             CChH-HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC
Q 007573          403 PDGI-TFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMP  468 (597)
Q Consensus       403 p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  468 (597)
                      |+.+ -|..-.+.+.+.|++++|..++++..+-  -.||...-..-+.-..++++.++|.++.....
T Consensus       402 PTliEly~~KaRI~kH~G~l~eAa~~l~ea~el--D~aDR~INsKcAKYmLrAn~i~eA~~~~skFT  466 (700)
T KOG1156|consen  402 PTLIELYLVKARIFKHAGLLDEAAAWLDEAQEL--DTADRAINSKCAKYMLRANEIEEAEEVLSKFT  466 (700)
T ss_pred             chHHHHHHHHHHHHHhcCChHHHHHHHHHHHhc--cchhHHHHHHHHHHHHHccccHHHHHHHHHhh
Confidence            4422 3333345555666666666666655431  12333333344445556666666666554443

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.08  E-value=2.7e-07  Score=88.67  Aligned_cols=95  Identities=12%  Similarity=0.100  Sum_probs=59.9

Q ss_pred             HHHhcCChHHHHHHHhhcCC---CCcchHHHHHHHHHhCCChhHHHHHHhhCCCCC---cchHHHHHHHHHcCCChHHHH
Q 007573           59 ALSRAGKISAARQLFDQMTT---KDVITWNAIITGYWQNGFLQESKNLFQSMPVKN---IVSWNCMIAGCIDNDRIDDAF  132 (597)
Q Consensus        59 ~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~ll~~~~~~~~~~~A~  132 (597)
                      +.+..|+++.|...|-....   +|.+.|+.-..+|+..|++++|++--.+-.+.+   +..|+....++.-.|++++|+
T Consensus        11 aa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA~   90 (539)
T KOG0548|consen   11 AAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEAI   90 (539)
T ss_pred             hhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHHHH
Confidence            34556777777777776544   455566666777777777777766555544332   335666666777777777777


Q ss_pred             HHHccCC---CCChhhHHHHHHHH
Q 007573          133 DYFQAMP---ERNTATYNAMISGF  153 (597)
Q Consensus       133 ~~~~~~~---~~~~~~~~~l~~~~  153 (597)
                      ..|..-+   +.|...++-|..++
T Consensus        91 ~ay~~GL~~d~~n~~L~~gl~~a~  114 (539)
T KOG0548|consen   91 LAYSEGLEKDPSNKQLKTGLAQAY  114 (539)
T ss_pred             HHHHHHhhcCCchHHHHHhHHHhh
Confidence            7776655   33445556666655

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.07  E-value=7.2e-09  Score=100.07  Aligned_cols=250  Identities=13%  Similarity=0.078  Sum_probs=180.2

Q ss_pred             ccchhHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHhccC---CCChhhHHHHHHHHHHcCCHHHHHHH
Q 007573          316 ALQLLNEGRQSHVLVIRNGFEANVSVCNAVITMYSRCGGILDSELAFRQIH---SPNLVSWNTIIAAFAQHGHYEKALIF  392 (597)
Q Consensus       316 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~  392 (597)
                      +.|++..|.-.|+..++.+ |-+...|..|.......++-..|+..+++..   +.|....-.|.-.|...|.-.+|++.
T Consensus       297 ~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~  375 (579)
T KOG1125|consen  297 KNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKM  375 (579)
T ss_pred             hcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHH
Confidence            4455555555555555554 4456666666667777777777777777665   45667777788888989999999999


Q ss_pred             HHHHHHCCCC--------CChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHH
Q 007573          393 FSQMGLNGFD--------PDGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQIT  464 (597)
Q Consensus       393 ~~~m~~~g~~--------p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~  464 (597)
                      |+.-+....+        ++...-..  ..+.....+....++|-++....+..+|+.++..|.-.|--.|.+++|.+.|
T Consensus       376 L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf  453 (579)
T KOG1125|consen  376 LDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCF  453 (579)
T ss_pred             HHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHH
Confidence            9887654210        00000000  1222333445566667666666576789999999999999999999999999


Q ss_pred             hhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHhCCCccCC
Q 007573          465 QGMP-FEA-DTGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRVRLLMKEQGVTKQC  542 (597)
Q Consensus       465 ~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~  542 (597)
                      +... .+| |...||.|+..++...+.++|+..|.+++++.|.-..+...|+-.|...|.++||.+.|-..+...-+.. 
T Consensus       454 ~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~-  532 (579)
T KOG1125|consen  454 EAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSR-  532 (579)
T ss_pred             HHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhccc-
Confidence            9876 666 5679999999999999999999999999999999999999999999999999999999888765332100 


Q ss_pred             CeeEEEECCEEEEEEeCCCCCcchHHHHHHHHHHHHHHhhcC
Q 007573          543 AYSWIEIGNKVHYFLGGDMSHPCIDKIHLELKRASVQMKSVD  584 (597)
Q Consensus       543 ~~s~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~  584 (597)
                          .          ..+..++ ...|+..|+.....+++++
T Consensus       533 ----~----------~~~~~~~-se~iw~tLR~als~~~~~D  559 (579)
T KOG1125|consen  533 ----N----------HNKAPMA-SENIWQTLRLALSAMNRSD  559 (579)
T ss_pred             ----c----------cccCCcc-hHHHHHHHHHHHHHcCCch
Confidence                0          0011122 6789999997777776665

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.06  E-value=3e-08  Score=98.34  Aligned_cols=232  Identities=17%  Similarity=0.189  Sum_probs=156.4

Q ss_pred             hHHHHHHHHHHhcCCHHHHHHHHhhcCCC----------Chh-HHHHHHHHHHHcCChhHHHHHHHHhHHC---CCCCCH
Q 007573          239 FVVTAMITGFCKVGMLENARLLFERIQPK----------DCV-SFNAMIAGYAQNGVAEEALRLFSGMIKM---DMQPDD  304 (597)
Q Consensus       239 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----------~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~  304 (597)
                      .+...+..+|...|+++.|+.+++.....          .+. ..+.+...|...+++++|..+|+++...   ..-++.
T Consensus       200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h  279 (508)
T KOG1840|consen  200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH  279 (508)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence            34555777888888888888877664331          111 3334556677777777777777776541   011111


Q ss_pred             HHHHHHHHHHhccchhHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHhccC----------CCChh-hH
Q 007573          305 ATLVSVFTACSALQLLNEGRQSHVLVIRNGFEANVSVCNAVITMYSRCGGILDSELAFRQIH----------SPNLV-SW  373 (597)
Q Consensus       305 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----------~~~~~-~~  373 (597)
                      .                               .-..+++.|..+|.+.|++++|...++...          .+.+. .+
T Consensus       280 ~-------------------------------~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l  328 (508)
T KOG1840|consen  280 P-------------------------------AVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQL  328 (508)
T ss_pred             H-------------------------------HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHH
Confidence            1                               112344555556666666666655554432          12222 45


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHC---CCCCC----hHHHHHHHHHHhccCcHHHHHHHHHHhHHhc----C-CCCC-
Q 007573          374 NTIIAAFAQHGHYEKALIFFSQMGLN---GFDPD----GITFLSLLSACGHAGKVNESMDLFELMVKVY----G-IIPS-  440 (597)
Q Consensus       374 ~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~----~-~~p~-  440 (597)
                      +.++..+...+++++|..++++..+.   -+.++    ..++..+...+...|++++|.++++.+++..    + ..+. 
T Consensus       329 ~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~  408 (508)
T KOG1840|consen  329 SELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGV  408 (508)
T ss_pred             HHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhh
Confidence            56677788889999999988876542   12333    3578899999999999999999999887652    1 1222 


Q ss_pred             hHHHHHHHHHHhhcCCHHHHHHHHhhCC--------CCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 007573          441 SEHYTCLVDILSRAGQLEKAWQITQGMP--------FEADT-GVWGSLLAACVINLNVELGELAAKKMRE  501 (597)
Q Consensus       441 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~  501 (597)
                      ...++.|...|.+.++..+|.++|.+..        ..|+. .+|..|...|...|+++.|+++.+.+..
T Consensus       409 ~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~  478 (508)
T KOG1840|consen  409 GKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN  478 (508)
T ss_pred             hHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence            4567888999999999999999987653        33443 4899999999999999999999998874

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=99.03  E-value=7.2e-08  Score=96.87  Aligned_cols=297  Identities=14%  Similarity=0.105  Sum_probs=186.3

Q ss_pred             HHHHHhcCCHHHHHHHHhhcCCC--Ch-hHHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhc-c---
Q 007573          245 ITGFCKVGMLENARLLFERIQPK--DC-VSFNAMIAGYAQNGVAEEALRLFSGMIKMDMQPDDATLVSVFTACSA-L---  317 (597)
Q Consensus       245 ~~~~~~~g~~~~A~~~~~~~~~~--~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~-~---  317 (597)
                      ...+...|++++|++.++.....  |. .........+.+.|+.++|..+|..+++.  .|+...|...+..+.. .   
T Consensus        11 ~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~r--NPdn~~Yy~~L~~~~g~~~~~   88 (517)
T PF12569_consen   11 NSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDR--NPDNYDYYRGLEEALGLQLQL   88 (517)
T ss_pred             HHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHhhhccc
Confidence            45567788888888888775542  33 35556677788888888888888888876  4666666555444431 1   


Q ss_pred             --chhHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHhccCCCChhhHHHHHHHHHHcCCH-HHHHHHHH
Q 007573          318 --QLLNEGRQSHVLVIRNGFEANVSVCNAVITMYSRCGGILDSELAFRQIHSPNLVSWNTIIAAFAQHGHY-EKALIFFS  394 (597)
Q Consensus       318 --~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~  394 (597)
                        .+.+....+++.+...-                                 |...+...+.-.+.....+ ..+..++.
T Consensus        89 ~~~~~~~~~~~y~~l~~~y---------------------------------p~s~~~~rl~L~~~~g~~F~~~~~~yl~  135 (517)
T PF12569_consen   89 SDEDVEKLLELYDELAEKY---------------------------------PRSDAPRRLPLDFLEGDEFKERLDEYLR  135 (517)
T ss_pred             ccccHHHHHHHHHHHHHhC---------------------------------ccccchhHhhcccCCHHHHHHHHHHHHH
Confidence              12333333333332221                                 1111111111111111122 34555667


Q ss_pred             HHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhc-------------CCCCCh--HHHHHHHHHHhhcCCHHH
Q 007573          395 QMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMVKVY-------------GIIPSS--EHYTCLVDILSRAGQLEK  459 (597)
Q Consensus       395 ~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-------------~~~p~~--~~~~~l~~~~~~~g~~~~  459 (597)
                      .+...|+++   +|..+-..|......+-..+++.......             .-+|+.  .++.-+...|...|++++
T Consensus       136 ~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~  212 (517)
T PF12569_consen  136 PQLRKGVPS---LFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEK  212 (517)
T ss_pred             HHHhcCCch---HHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHH
Confidence            777777654   45555555555555555555555544321             112443  344566888899999999


Q ss_pred             HHHHHhhCC-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHhCC
Q 007573          460 AWQITQGMP-FEAD-TGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRVRLLMKEQG  537 (597)
Q Consensus       460 A~~~~~~~~-~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  537 (597)
                      |++++++.. ..|. +..|..-...+.+.|++++|.+.++.+.++++.|.-+-...+..+.+.|++++|.++.....+.+
T Consensus       213 Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~  292 (517)
T PF12569_consen  213 ALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTRED  292 (517)
T ss_pred             HHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCC
Confidence            999999765 6676 56888888999999999999999999999999999988999999999999999999999887766


Q ss_pred             CccCC-----CeeEEEECCEEEEEEeCCCCCcchHHHHHHHHHHHHHHhhcCCccchhcccc
Q 007573          538 VTKQC-----AYSWIEIGNKVHYFLGGDMSHPCIDKIHLELKRASVQMKSVDDFVEIATSWS  594 (597)
Q Consensus       538 ~~~~~-----~~s~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  594 (597)
                      ..+..     -+.|.               .-+..+.+.........+++...+.++|.+|.
T Consensus       293 ~~~~~~L~~mQc~Wf---------------~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~~  339 (517)
T PF12569_consen  293 VDPLSNLNDMQCMWF---------------ETECAEAYLRQGDYGLALKRFHAVLKHFDDFE  339 (517)
T ss_pred             CCcccCHHHHHHHHH---------------HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHh
Confidence            42111     11232               11233344444555555566666666666554

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.01  E-value=3.3e-06  Score=82.27  Aligned_cols=405  Identities=10%  Similarity=0.065  Sum_probs=208.6

Q ss_pred             HcCCChHHHHHHHccCC---CCChhhHHHHHHHHHcCCChHHHHHHHccCCCCCchhHHHHHHHH--HhCCChhHHHHHH
Q 007573          123 IDNDRIDDAFDYFQAMP---ERNTATYNAMISGFLKHGRLEEATRLFEQMPRRNVISYTAMLDGF--MKKGEVDKARALS  197 (597)
Q Consensus       123 ~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~--~~~g~~~~A~~~~  197 (597)
                      ...+++++|.+....+.   +.+...+..-+-+....+++++|+.+.+.-...+....-.+=.+|  .+.+..++|+..+
T Consensus        23 ~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrlnk~Dealk~~  102 (652)
T KOG2376|consen   23 GKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRLNKLDEALKTL  102 (652)
T ss_pred             ccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHcccHHHHHHHH
Confidence            34445555555554444   334445555555555566666666554433211111000012222  3456666666666


Q ss_pred             HhcccCCcchHHHHHHHHHcCCChHHHHHHHhhcCCCCCCchHHHHHHHHHHhcCCHHHHHHHHhhcCCC---ChhHHHH
Q 007573          198 DYMSFKNVVSWTVMITGYVKNERFCEARELFYRMPDYDKNVFVVTAMITGFCKVGMLENARLLFERIQPK---DCVSFNA  274 (597)
Q Consensus       198 ~~m~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~  274 (597)
                      +-....|..+...-...+.+.|++++|..+|+.+.+...+..--..-.++... +..-.+. +.+..+..   +-..+..
T Consensus       103 ~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~-~a~l~~~-~~q~v~~v~e~syel~yN  180 (652)
T KOG2376|consen  103 KGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAV-AAALQVQ-LLQSVPEVPEDSYELLYN  180 (652)
T ss_pred             hcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHH-HHhhhHH-HHHhccCCCcchHHHHHH
Confidence            64444454455555666667777777777777765522111111111111111 1111111 23333322   2223333


Q ss_pred             HHHHHHHcCChhHHHHHHHHhHHCC-------CCC------CHH-HHHHHHHHHhccchhHHHHHHHHHHHHhCCCCcc-
Q 007573          275 MIAGYAQNGVAEEALRLFSGMIKMD-------MQP------DDA-TLVSVFTACSALQLLNEGRQSHVLVIRNGFEANV-  339 (597)
Q Consensus       275 li~~~~~~g~~~~A~~~~~~m~~~g-------~~p------~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-  339 (597)
                      ....+...|++.+|+++++...+.+       -.-      +.. .-..+.-++-..|+.+++..++...++......+ 
T Consensus       181 ~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~~~  260 (652)
T KOG2376|consen  181 TACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPADEPS  260 (652)
T ss_pred             HHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCchH
Confidence            4556677888888888887773211       011      111 1123334456789999999999999988743221 


Q ss_pred             --cHHHHHHHHHHhcCCHH-HHHHHHhccCCCCh--------------hhH-HHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 007573          340 --SVCNAVITMYSRCGGIL-DSELAFRQIHSPNL--------------VSW-NTIIAAFAQHGHYEKALIFFSQMGLNGF  401 (597)
Q Consensus       340 --~~~~~l~~~~~~~g~~~-~A~~~~~~~~~~~~--------------~~~-~~li~~~~~~g~~~~A~~~~~~m~~~g~  401 (597)
                        ...|.|+.+-....-++ .+...++.......              +.. +.++..|  .+..+.+.++.....  +.
T Consensus       261 ~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~--tnk~~q~r~~~a~lp--~~  336 (652)
T KOG2376|consen  261 LAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALF--TNKMDQVRELSASLP--GM  336 (652)
T ss_pred             HHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhHHHHHHHHHhCC--cc
Confidence              22333333222211111 22223332221111              111 1222222  234455555443332  22


Q ss_pred             CCChHHHHHHHHHHhc--cCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHh--------hCC-C
Q 007573          402 DPDGITFLSLLSACGH--AGKVNESMDLFELMVKVYGIIPS-SEHYTCLVDILSRAGQLEKAWQITQ--------GMP-F  469 (597)
Q Consensus       402 ~p~~~~~~~ll~~~~~--~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~--------~~~-~  469 (597)
                      .|. ..+.+++..+.+  ...+..+.+++....+.  .+-. ..+.-.++......|+++.|.+++.        .++ .
T Consensus       337 ~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~  413 (652)
T KOG2376|consen  337 SPE-SLFPILLQEATKVREKKHKKAIELLLQFADG--HPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEA  413 (652)
T ss_pred             Cch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhh
Confidence            333 334445544432  23577777877776553  2222 4556667788899999999999998        444 3


Q ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCC---CCchHHHHHHHHHhcCCcHHHHHHHHHHHhC
Q 007573          470 EADTGVWGSLLAACVINLNVELGELAAKKMREL----DPQ---NSAVYVMLSNLYAAAGMWRDVTRVRLLMKEQ  536 (597)
Q Consensus       470 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  536 (597)
                      .-.+.+...+...+.+.++.+.|..++.+++.-    .+.   ....+..++..-.+.|+-++|...++++.+.
T Consensus       414 ~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~  487 (652)
T KOG2376|consen  414 KHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKF  487 (652)
T ss_pred             ccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHh
Confidence            334556666667777777777788888777752    222   2344555666677789999999999999873

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=98.99  E-value=2.1e-07  Score=79.77  Aligned_cols=188  Identities=12%  Similarity=0.035  Sum_probs=108.6

Q ss_pred             ccchhHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHhccC---CCChhhHHHHHHHHHHcCCHHHHHHH
Q 007573          316 ALQLLNEGRQSHVLVIRNGFEANVSVCNAVITMYSRCGGILDSELAFRQIH---SPNLVSWNTIIAAFAQHGHYEKALIF  392 (597)
Q Consensus       316 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~  392 (597)
                      ..|+...|+.-++++++.. +.+..++..+...|.+.|..+.|.+.|++..   +.+..+.|.....+|..|++++|...
T Consensus        47 ~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~  125 (250)
T COG3063          47 QQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQ  125 (250)
T ss_pred             HCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHH
Confidence            3333333333333333332 3334445555556666666666666665543   44455666666666667777777777


Q ss_pred             HHHHHHCCCCCC-hHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC--
Q 007573          393 FSQMGLNGFDPD-GITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPS-SEHYTCLVDILSRAGQLEKAWQITQGMP--  468 (597)
Q Consensus       393 ~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--  468 (597)
                      |++......-|. ..||..+.-+..+.|+.+.|...|++..+.   .|+ +.....+.......|++..|..+++...  
T Consensus       126 F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~---dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~  202 (250)
T COG3063         126 FERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALEL---DPQFPPALLELARLHYKAGDYAPARLYLERYQQR  202 (250)
T ss_pred             HHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHh---CcCCChHHHHHHHHHHhcccchHHHHHHHHHHhc
Confidence            776665432222 346666666666677777777777666542   233 4555666666667777777766666543  


Q ss_pred             CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 007573          469 FEADTGVWGSLLAACVINLNVELGELAAKKMRELDPQNS  507 (597)
Q Consensus       469 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~  507 (597)
                      ..++..++-..|..-...||.+.+.+.=.++.+.-|...
T Consensus       203 ~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~  241 (250)
T COG3063         203 GGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSE  241 (250)
T ss_pred             ccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcH
Confidence            335555555555666666777766666666666666643

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.98  E-value=2.9e-08  Score=92.88  Aligned_cols=80  Identities=16%  Similarity=0.126  Sum_probs=42.6

Q ss_pred             CHHHHHHHHhhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCc-HHHHHHHHH
Q 007573          456 QLEKAWQITQGMP--FEADTGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGMW-RDVTRVRLL  532 (597)
Q Consensus       456 ~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~-~~A~~~~~~  532 (597)
                      .+.+|..+|+++.  ..+++.+.+.+..++...|++++|..++.++++.+|+++.++.+++-+....|+. +.+.+++.+
T Consensus       182 ~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~q  261 (290)
T PF04733_consen  182 KYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQ  261 (290)
T ss_dssp             CCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHH
Confidence            3455555555543  2344555555555666666666666666666666666666666666666666655 444555555


Q ss_pred             HHh
Q 007573          533 MKE  535 (597)
Q Consensus       533 ~~~  535 (597)
                      +..
T Consensus       262 L~~  264 (290)
T PF04733_consen  262 LKQ  264 (290)
T ss_dssp             CHH
T ss_pred             HHH
Confidence            444

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.97  E-value=1e-06  Score=88.62  Aligned_cols=353  Identities=14%  Similarity=0.097  Sum_probs=211.5

Q ss_pred             ChhhHHHHHH--HHHcCCChHHHHHHHccCCCCCchhHHHHHHHHHhCCChhHHHHHHHhc------------ccCCcch
Q 007573          142 NTATYNAMIS--GFLKHGRLEEATRLFEQMPRRNVISYTAMLDGFMKKGEVDKARALSDYM------------SFKNVVS  207 (597)
Q Consensus       142 ~~~~~~~l~~--~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m------------~~~~~~~  207 (597)
                      |+.+-.++++  .|..-|+.+.|.+-.+-+.  +...|..|.+.|.+..+.+-|.-.+-.|            .+.+..+
T Consensus       725 d~~TRkaml~FSfyvtiG~MD~AfksI~~Ik--S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~  802 (1416)
T KOG3617|consen  725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIK--SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEED  802 (1416)
T ss_pred             CHHHHHhhhceeEEEEeccHHHHHHHHHHHh--hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcch
Confidence            5556666653  4666777777776665553  3456777777777777777776666665            1112133


Q ss_pred             HHHHHHHHHcCCChHHHHHHHhhcCCCCCCchHHHHHHHHHHhcCCHHHHHHHHhhcCCC-ChhHHHHHHHHHHHcCChh
Q 007573          208 WTVMITGYVKNERFCEARELFYRMPDYDKNVFVVTAMITGFCKVGMLENARLLFERIQPK-DCVSFNAMIAGYAQNGVAE  286 (597)
Q Consensus       208 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~~g~~~  286 (597)
                      -..+.-.....|.+++|+.+|.+.++       |-.|-..|-..|.+++|.++-+.-..- =..||.....-+...++.+
T Consensus       803 eakvAvLAieLgMlEeA~~lYr~ckR-------~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~  875 (1416)
T KOG3617|consen  803 EAKVAVLAIELGMLEEALILYRQCKR-------YDLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIE  875 (1416)
T ss_pred             hhHHHHHHHHHhhHHHHHHHHHHHHH-------HHHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHH
Confidence            33333344567778888888877665       334555666777777777766532221 1235666666666667777


Q ss_pred             HHHHHHHHh----------HHCC---------CCCCHHHHHHHHHHHhccchhHHHHHHHHHHHHhCCCCcccHHHHHHH
Q 007573          287 EALRLFSGM----------IKMD---------MQPDDATLVSVFTACSALQLLNEGRQSHVLVIRNGFEANVSVCNAVIT  347 (597)
Q Consensus       287 ~A~~~~~~m----------~~~g---------~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  347 (597)
                      .|++.|++.          +...         -..|...|......+...|+.+.|..++..+..         |-+++.
T Consensus       876 ~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~Vr  946 (1416)
T KOG3617|consen  876 AALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVR  946 (1416)
T ss_pred             HHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhhee
Confidence            777666542          1111         122334444455555667777777777766544         344556


Q ss_pred             HHHhcCCHHHHHHHHhccCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhc----------
Q 007573          348 MYSRCGGILDSELAFRQIHSPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGH----------  417 (597)
Q Consensus       348 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~----------  417 (597)
                      ..|-+|+.++|-++-++  ..|......+...|-..|++.+|+.+|.+.+.         |...|+.|-.          
T Consensus       947 I~C~qGk~~kAa~iA~e--sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa---------fsnAIRlcKEnd~~d~L~nl 1015 (1416)
T KOG3617|consen  947 IKCIQGKTDKAARIAEE--SGDKAACYHLARMYENDGDVVKAVKFFTRAQA---------FSNAIRLCKENDMKDRLANL 1015 (1416)
T ss_pred             eEeeccCchHHHHHHHh--cccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH---------HHHHHHHHHhcCHHHHHHHH
Confidence            66667777777777665  34666666677888888888888888877643         3333333222          


Q ss_pred             -----cCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHH-HhhC------------CCCCCHHHHHHH
Q 007573          418 -----AGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQI-TQGM------------PFEADTGVWGSL  479 (597)
Q Consensus       418 -----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~-~~~~------------~~~p~~~~~~~l  479 (597)
                           ..+.-.|-++|++.    |.     ....-+..|-++|.+.+|+++ |..-            ....|+...+.-
T Consensus      1016 al~s~~~d~v~aArYyEe~----g~-----~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~Rc 1086 (1416)
T KOG3617|consen 1016 ALMSGGSDLVSAARYYEEL----GG-----YAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRC 1086 (1416)
T ss_pred             HhhcCchhHHHHHHHHHHc----ch-----hhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHH
Confidence                 22333344444433    11     122345567788888888776 3211            123356667776


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhc----------------------CC------CC---CchHHHHHHHHHhcCCcHHHHH
Q 007573          480 LAACVINLNVELGELAAKKMREL----------------------DP------QN---SAVYVMLSNLYAAAGMWRDVTR  528 (597)
Q Consensus       480 ~~~~~~~g~~~~a~~~~~~~~~~----------------------~p------~~---~~~~~~l~~~~~~~g~~~~A~~  528 (597)
                      ...+....++++|..++-.+.+.                      -|      +.   ..++..++..|.++|.|..|.+
T Consensus      1087 adFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtK 1166 (1416)
T KOG3617|consen 1087 ADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATK 1166 (1416)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHH
Confidence            67777777788887776554431                      11      11   2567789999999999998877


Q ss_pred             HHHH
Q 007573          529 VRLL  532 (597)
Q Consensus       529 ~~~~  532 (597)
                      -|.+
T Consensus      1167 KfTQ 1170 (1416)
T KOG3617|consen 1167 KFTQ 1170 (1416)
T ss_pred             HHhh
Confidence            6544

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.95  E-value=1.7e-06  Score=76.92  Aligned_cols=401  Identities=13%  Similarity=0.072  Sum_probs=188.4

Q ss_pred             HHHHHHHHHcCCChHHHHHHHccCCCC---ChhhHHHHHHHHHcCCChHHHHHHHccCCC--CCchhHH-HHHHHHHhCC
Q 007573          115 WNCMIAGCIDNDRIDDAFDYFQAMPER---NTATYNAMISGFLKHGRLEEATRLFEQMPR--RNVISYT-AMLDGFMKKG  188 (597)
Q Consensus       115 ~~~ll~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~-~li~~~~~~g  188 (597)
                      +.+++..+.+..++.+|++++....+.   +....+.|...|-+..++..|...++++..  |...-|. --...+.+.+
T Consensus        13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~   92 (459)
T KOG4340|consen   13 FTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKAC   92 (459)
T ss_pred             hHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhc
Confidence            444455555555666666655554432   223344455555556666666666655543  2222221 1234445555


Q ss_pred             ChhHHHHHHHhcccC-CcchHHHHHH--HHHcCCChHHHHHHHhhcCCCCCCchHHHHHHHHHHhcCCHHHHHHHHhhcC
Q 007573          189 EVDKARALSDYMSFK-NVVSWTVMIT--GYVKNERFCEARELFYRMPDYDKNVFVVTAMITGFCKVGMLENARLLFERIQ  265 (597)
Q Consensus       189 ~~~~A~~~~~~m~~~-~~~~~~~ll~--~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  265 (597)
                      .+..|+++...|... +...-..-+.  .....+++..+..++++... ..+..+.+.......+.|+++.|.+-|+...
T Consensus        93 i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~-en~Ad~~in~gCllykegqyEaAvqkFqaAl  171 (459)
T KOG4340|consen   93 IYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPS-ENEADGQINLGCLLYKEGQYEAAVQKFQAAL  171 (459)
T ss_pred             ccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccC-CCccchhccchheeeccccHHHHHHHHHHHH
Confidence            566666655555332 1111111111  12234555555555554432 0122233333334445555555555555443


Q ss_pred             C----CChhHHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCHHH----HHHHHHHHhccchhHHHHHHHHHHHHhCCCC
Q 007573          266 P----KDCVSFNAMIAGYAQNGVAEEALRLFSGMIKMDMQPDDAT----LVSVFTACSALQLLNEGRQSHVLVIRNGFEA  337 (597)
Q Consensus       266 ~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~----~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~  337 (597)
                      +    ....+||..+. ..+.|+++.|++...++.++|++.....    -+-.+.+-+-.+-......-           
T Consensus       172 qvsGyqpllAYniALa-Hy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sa-----------  239 (459)
T KOG4340|consen  172 QVSGYQPLLAYNLALA-HYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSA-----------  239 (459)
T ss_pred             hhcCCCchhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHH-----------
Confidence            3    12234443332 2333455555555555555554321110    00000000000000000000           


Q ss_pred             cccHHHHHHHHHHhcCCHHHHHHHHhccCC-----CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHH
Q 007573          338 NVSVCNAVITMYSRCGGILDSELAFRQIHS-----PNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLL  412 (597)
Q Consensus       338 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll  412 (597)
                      -+..+|.-...+.+.|+.+.|.+.+..|++     .|++|...+.-.- ..+++.+..+-+.-+.+.. +-...||..++
T Consensus       240 l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~n-PfP~ETFANlL  317 (459)
T KOG4340|consen  240 LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQN-PFPPETFANLL  317 (459)
T ss_pred             HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcC-CCChHHHHHHH
Confidence            011233334456678899999999999983     4666666554322 2455555555555555543 23457888888


Q ss_pred             HHHhccCcHHHHHHHHHHhHHhcCCC-CChHHHHHHHHHHhh-cCCHHHHHHHHhhCCCCCCHHHHHHHHHH--HHhcCC
Q 007573          413 SACGHAGKVNESMDLFELMVKVYGII-PSSEHYTCLVDILSR-AGQLEKAWQITQGMPFEADTGVWGSLLAA--CVINLN  488 (597)
Q Consensus       413 ~~~~~~g~~~~a~~~~~~~~~~~~~~-p~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~p~~~~~~~l~~~--~~~~g~  488 (597)
                      -.|++..-++.|-.++.+-... ... .+...|+ |++++.- .-..++|++-++.+...-....-..-+..  -...++
T Consensus       318 llyCKNeyf~lAADvLAEn~~l-Tyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La~~l~~kLRklAi~vQe~r~~~d  395 (459)
T KOG4340|consen  318 LLYCKNEYFDLAADVLAENAHL-TYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLAGMLTEKLRKLAIQVQEARHNRD  395 (459)
T ss_pred             HHHhhhHHHhHHHHHHhhCcch-hHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            8999988888888776542111 000 1223333 3444443 34667776665544300000000011111  111121


Q ss_pred             ---HHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHh
Q 007573          489 ---VELGELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRVRLLMKE  535 (597)
Q Consensus       489 ---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  535 (597)
                         ...+++-+++.+++-.   .+...-++.|.+..++.-+.++|..-.+
T Consensus       396 d~a~R~ai~~Yd~~LE~YL---PVlMa~AkiyW~~~Dy~~vEk~Fr~Sve  442 (459)
T KOG4340|consen  396 DEAIRKAVNEYDETLEKYL---PVLMAQAKIYWNLEDYPMVEKIFRKSVE  442 (459)
T ss_pred             HHHHHHHHHHHHHHHHHHH---HHHHHHHHhhccccccHHHHHHHHHHHh
Confidence               2233344444444322   2456678889999999999999987655

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.94  E-value=1.8e-07  Score=87.54  Aligned_cols=156  Identities=13%  Similarity=0.096  Sum_probs=116.2

Q ss_pred             HHHHHhcCCHHHHHHHHhccCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHh----ccCcH
Q 007573          346 ITMYSRCGGILDSELAFRQIHSPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACG----HAGKV  421 (597)
Q Consensus       346 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~----~~g~~  421 (597)
                      ..++...|++++|.+++...  .+.......+..|.+.++++.|.+.++.|.+.  ..| .+...+..++.    ..+.+
T Consensus       109 A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD-~~l~qLa~awv~l~~g~e~~  183 (290)
T PF04733_consen  109 ATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQI--DED-SILTQLAEAWVNLATGGEKY  183 (290)
T ss_dssp             HHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCC-HHHHHHHHHHHHHHHTTTCC
T ss_pred             HHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCc-HHHHHHHHHHHHHHhCchhH
Confidence            34566678888888877765  56677777889999999999999999999864  334 34444444432    23468


Q ss_pred             HHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCH-HHHHHHHHH
Q 007573          422 NESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMP-FEA-DTGVWGSLLAACVINLNV-ELGELAAKK  498 (597)
Q Consensus       422 ~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~-~~a~~~~~~  498 (597)
                      .+|..+|+++..  ...+++.+.+.+..+....|++++|.+++.+.. ..| ++.++..++......|+. +.+.+++.+
T Consensus       184 ~~A~y~f~El~~--~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~q  261 (290)
T PF04733_consen  184 QDAFYIFEELSD--KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQ  261 (290)
T ss_dssp             CHHHHHHHHHHC--CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHH
T ss_pred             HHHHHHHHHHHh--ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHH
Confidence            999999999875  556788899999999999999999999988754 444 566788888888888887 778889999


Q ss_pred             HHhcCCCCCc
Q 007573          499 MRELDPQNSA  508 (597)
Q Consensus       499 ~~~~~p~~~~  508 (597)
                      +....|+++.
T Consensus       262 L~~~~p~h~~  271 (290)
T PF04733_consen  262 LKQSNPNHPL  271 (290)
T ss_dssp             CHHHTTTSHH
T ss_pred             HHHhCCCChH
Confidence            9989998654

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=98.93  E-value=1.5e-06  Score=87.51  Aligned_cols=298  Identities=13%  Similarity=0.103  Sum_probs=155.5

Q ss_pred             HHHHHcCCChHHHHHHHhhcCCCCCC-chHHHHHHHHHHhcCCHHHHHHHHhhcCCCCh---hHHHHHHHHHHHc-----
Q 007573          212 ITGYVKNERFCEARELFYRMPDYDKN-VFVVTAMITGFCKVGMLENARLLFERIQPKDC---VSFNAMIAGYAQN-----  282 (597)
Q Consensus       212 l~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~-----  282 (597)
                      ...+...|++++|++.+..-.+.-+| .......+..+.+.|+.++|..++..+.+.|+   .-|..+..+..-.     
T Consensus        11 ~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~   90 (517)
T PF12569_consen   11 NSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSD   90 (517)
T ss_pred             HHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhccccc
Confidence            45667899999999999887764455 44567788999999999999999999876433   3455555555222     


Q ss_pred             CChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhccchh-HHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHH
Q 007573          283 GVAEEALRLFSGMIKMDMQPDDATLVSVFTACSALQLL-NEGRQSHVLVIRNGFEANVSVCNAVITMYSRCGGILDSELA  361 (597)
Q Consensus       283 g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~  361 (597)
                      ...+...++|+++...-  |.......+.-.+.....+ ..+..++...++.|+|+   +++.|-..|....+.+-...+
T Consensus        91 ~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~l  165 (517)
T PF12569_consen   91 EDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIESL  165 (517)
T ss_pred             ccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHHH
Confidence            24677788888887653  5444433333233332233 45566677777777643   566666666543333333333


Q ss_pred             HhccCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChH--HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC
Q 007573          362 FRQIHSPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGI--TFLSLLSACGHAGKVNESMDLFELMVKVYGIIP  439 (597)
Q Consensus       362 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p  439 (597)
                      +....           ..+...+.+...-      ....-.|...  ++..+...|...|++++|.++.+..+..   .|
T Consensus       166 ~~~~~-----------~~l~~~~~~~~~~------~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h---tP  225 (517)
T PF12569_consen  166 VEEYV-----------NSLESNGSFSNGD------DEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH---TP  225 (517)
T ss_pred             HHHHH-----------HhhcccCCCCCcc------ccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc---CC
Confidence            22211           0000000000000      0000122221  2233334444555555555555555432   33


Q ss_pred             C-hHHHHHHHHHHhhcCCHHHHHHHHhhCC-CC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---------C
Q 007573          440 S-SEHYTCLVDILSRAGQLEKAWQITQGMP-FE-ADTGVWGSLLAACVINLNVELGELAAKKMRELDPQN---------S  507 (597)
Q Consensus       440 ~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~---------~  507 (597)
                      + ++.|..-+..|-+.|++++|.+.++... .. .|..+-+-....+.+.|++++|..++....+.+.++         .
T Consensus       226 t~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~  305 (517)
T PF12569_consen  226 TLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCM  305 (517)
T ss_pred             CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHH
Confidence            3 4455555555555555555555555443 12 233333333344455555555555555544433111         1


Q ss_pred             chHHHHHHHHHhcCCcHHHHHHHHHHH
Q 007573          508 AVYVMLSNLYAAAGMWRDVTRVRLLMK  534 (597)
Q Consensus       508 ~~~~~l~~~~~~~g~~~~A~~~~~~~~  534 (597)
                      ....-.+.+|.+.|++..|++.|..+.
T Consensus       306 Wf~~e~a~a~~r~~~~~~ALk~~~~v~  332 (517)
T PF12569_consen  306 WFETECAEAYLRQGDYGLALKRFHAVL  332 (517)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            112344556666666666665555444

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=98.93  E-value=9.6e-07  Score=90.75  Aligned_cols=450  Identities=12%  Similarity=0.052  Sum_probs=266.5

Q ss_pred             hHHHHHHHhhcCCCCcc---hHHHHHHHHHhCCChhHHHHHHhhCCCC---CcchHHHHHHHHHcCCChHHHHHHHccCC
Q 007573           66 ISAARQLFDQMTTKDVI---TWNAIITGYWQNGFLQESKNLFQSMPVK---NIVSWNCMIAGCIDNDRIDDAFDYFQAMP  139 (597)
Q Consensus        66 ~~~A~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~~~~~~A~~~~~~~~  139 (597)
                      ...|...|=+..+-|+.   .|..|...|....+...|...|++..+-   +..++....+.|++..+++.|..+.-...
T Consensus       474 ~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~  553 (1238)
T KOG1127|consen  474 SALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAA  553 (1238)
T ss_pred             HHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHh
Confidence            55566655555553332   6888888887777888888888888754   67788888888999888888888843333


Q ss_pred             CCC-----hhhHHHHHHHHHcCCChHHHHHHHccCCC---CCchhHHHHHHHHHhCCChhHHHHHHHhcccCCcch-HHH
Q 007573          140 ERN-----TATYNAMISGFLKHGRLEEATRLFEQMPR---RNVISYTAMLDGFMKKGEVDKARALSDYMSFKNVVS-WTV  210 (597)
Q Consensus       140 ~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~-~~~  210 (597)
                      +.+     ...|....-.|.+.++...|..-|+...+   .|...|..+..+|...|++..|+.+|.+....++.. |..
T Consensus       554 qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~  633 (1238)
T KOG1127|consen  554 QKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGR  633 (1238)
T ss_pred             hhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHH
Confidence            222     12344455567788888888888887765   356678888899999999999999998875444322 222


Q ss_pred             --HHHHHHcCCChHHHHHHHhhcCCCCCC--------chHHHHHHHHHHhcCCHHHHHHHHhhcCC-----------CCh
Q 007573          211 --MITGYVKNERFCEARELFYRMPDYDKN--------VFVVTAMITGFCKVGMLENARLLFERIQP-----------KDC  269 (597)
Q Consensus       211 --ll~~~~~~g~~~~a~~~~~~~~~~~~~--------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----------~~~  269 (597)
                        ..-..+..|++.++...++.+.....+        ..++..+...+.-.|-..+|..+++...+           .+.
T Consensus       634 fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~  713 (1238)
T KOG1127|consen  634 FKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDR  713 (1238)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhH
Confidence              223345678888888888877552111        11222222222222333333333332211           122


Q ss_pred             hHHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhccchh---H---HHHHHHHHHHHhCCCCcccHHH
Q 007573          270 VSFNAMIAGYAQNGVAEEALRLFSGMIKMDMQPDDATLVSVFTACSALQLL---N---EGRQSHVLVIRNGFEANVSVCN  343 (597)
Q Consensus       270 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~---~---~a~~~~~~~~~~~~~~~~~~~~  343 (597)
                      ..|-.+.+          |..+|-+.. .. .|+......+..-.-..+..   +   .|.+.+-.  ......+...|.
T Consensus       714 ~~Wi~asd----------ac~~f~q~e-~~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~--hlsl~~~~~~Wy  779 (1238)
T KOG1127|consen  714 LQWIVASD----------ACYIFSQEE-PS-IVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIA--HLSLAIHMYPWY  779 (1238)
T ss_pred             HHHHHHhH----------HHHHHHHhc-cc-chHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhH--HHHHhhccchHH
Confidence            23333322          222332222 11 22222211111111111111   1   01111110  111122244444


Q ss_pred             HHHHHHHh----cC----CHHHHHHHHhccC---CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHH
Q 007573          344 AVITMYSR----CG----GILDSELAFRQIH---SPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLL  412 (597)
Q Consensus       344 ~l~~~~~~----~g----~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll  412 (597)
                      .|+..|.+    +|    +...|...+.+..   ..+...||.+.-. ...|++.-|...|-+-.... +....+|..+.
T Consensus       780 NLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W~Nlg  857 (1238)
T KOG1127|consen  780 NLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLG  857 (1238)
T ss_pred             HHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhheeccc
Confidence            44444333    22    3345666666554   4667788887655 66688888888777666542 44567888888


Q ss_pred             HHHhccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhC-----C--CCCCHHHHHHHHHHHH
Q 007573          413 SACGHAGKVNESMDLFELMVKVYGIIPS-SEHYTCLVDILSRAGQLEKAWQITQGM-----P--FEADTGVWGSLLAACV  484 (597)
Q Consensus       413 ~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-----~--~~p~~~~~~~l~~~~~  484 (597)
                      ..+....+++.|...|...+   .+.|+ ...|..........|+.-++.++|..-     .  .-|+...|........
T Consensus       858 vL~l~n~d~E~A~~af~~~q---SLdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~  934 (1238)
T KOG1127|consen  858 VLVLENQDFEHAEPAFSSVQ---SLDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHL  934 (1238)
T ss_pred             eeEEecccHHHhhHHHHhhh---hcCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHH
Confidence            88999999999999999876   45554 556655555566788888888888651     1  2344445544444455


Q ss_pred             hcCCHHHHHH----------HHHHHHhcCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHH
Q 007573          485 INLNVELGEL----------AAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRVRLLMK  534 (597)
Q Consensus       485 ~~g~~~~a~~----------~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  534 (597)
                      ..|+.++-+.          .+++.+...|+...+|...+...-+.+.+.+|.+...+..
T Consensus       935 ~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~Rli  994 (1238)
T KOG1127|consen  935 QNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLI  994 (1238)
T ss_pred             hccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence            5666554444          3445555678888899999999999999999888877764

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.92  E-value=1e-05  Score=83.35  Aligned_cols=230  Identities=15%  Similarity=0.225  Sum_probs=135.7

Q ss_pred             ChhhHHHHHHHHHcCCChHHHHHHHccCC-CCCch-----hHHHHHHHHHhCCChhHHHHHHHhcccCCcchHHHHHHHH
Q 007573          142 NTATYNAMISGFLKHGRLEEATRLFEQMP-RRNVI-----SYTAMLDGFMKKGEVDKARALSDYMSFKNVVSWTVMITGY  215 (597)
Q Consensus       142 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~-----~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ll~~~  215 (597)
                      |+.--+.-+.++...+-..+-+++++++. ++++.     .-|.|+-.-.+ -+..++.+..+++..-|..   .+...+
T Consensus       983 dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAik-ad~trVm~YI~rLdnyDa~---~ia~ia 1058 (1666)
T KOG0985|consen  983 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIK-ADRTRVMEYINRLDNYDAP---DIAEIA 1058 (1666)
T ss_pred             ChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhh-cChHHHHHHHHHhccCCch---hHHHHH
Confidence            45555556666777777777777777664 23222     22333333232 2344455555555332221   233445


Q ss_pred             HcCCChHHHHHHHhhcCCCCCCchHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChhHHHHHHHHh
Q 007573          216 VKNERFCEARELFYRMPDYDKNVFVVTAMITGFCKVGMLENARLLFERIQPKDCVSFNAMIAGYAQNGVAEEALRLFSGM  295 (597)
Q Consensus       216 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m  295 (597)
                      ...+-+++|..+|+...   .+....+.|+.   ..+.++.|.+.-++..++  ..|..+..+-.+.|...+|++-|-+ 
T Consensus      1059 i~~~LyEEAF~ifkkf~---~n~~A~~VLie---~i~~ldRA~efAe~~n~p--~vWsqlakAQL~~~~v~dAieSyik- 1129 (1666)
T KOG0985|consen 1059 IENQLYEEAFAIFKKFD---MNVSAIQVLIE---NIGSLDRAYEFAERCNEP--AVWSQLAKAQLQGGLVKDAIESYIK- 1129 (1666)
T ss_pred             hhhhHHHHHHHHHHHhc---ccHHHHHHHHH---HhhhHHHHHHHHHhhCCh--HHHHHHHHHHHhcCchHHHHHHHHh-
Confidence            55666777777776532   23333344433   235566666666665544  4578888888888888888776643 


Q ss_pred             HHCCCCCCHHHHHHHHHHHhccchhHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHhccCCCChhhHHH
Q 007573          296 IKMDMQPDDATLVSVFTACSALQLLNEGRQSHVLVIRNGFEANVSVCNAVITMYSRCGGILDSELAFRQIHSPNLVSWNT  375 (597)
Q Consensus       296 ~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~  375 (597)
                           ..|...|..++..+.+.|.+++...++..+.+..-.|.+  -+.|+-+|++.+++.+-++++.   .||......
T Consensus      1130 -----adDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~i--d~eLi~AyAkt~rl~elE~fi~---gpN~A~i~~ 1199 (1666)
T KOG0985|consen 1130 -----ADDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYI--DSELIFAYAKTNRLTELEEFIA---GPNVANIQQ 1199 (1666)
T ss_pred             -----cCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccc--hHHHHHHHHHhchHHHHHHHhc---CCCchhHHH
Confidence                 235667788888888888888888888777776655544  3467778888887777666543   344444444


Q ss_pred             HHHHHHHcCCHHHHHHHHH
Q 007573          376 IIAAFAQHGHYEKALIFFS  394 (597)
Q Consensus       376 li~~~~~~g~~~~A~~~~~  394 (597)
                      +..-|...|.++.|.-+|.
T Consensus      1200 vGdrcf~~~~y~aAkl~y~ 1218 (1666)
T KOG0985|consen 1200 VGDRCFEEKMYEAAKLLYS 1218 (1666)
T ss_pred             HhHHHhhhhhhHHHHHHHH
Confidence            5555555555555544443

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.90  E-value=4.7e-06  Score=82.40  Aligned_cols=196  Identities=8%  Similarity=-0.016  Sum_probs=116.8

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHhccC---CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCCh--HHHHHHHHHH
Q 007573          342 CNAVITMYSRCGGILDSELAFRQIH---SPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGF-DPDG--ITFLSLLSAC  415 (597)
Q Consensus       342 ~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~--~~~~~ll~~~  415 (597)
                      ...+...+...|++++|+..+++..   +.+...+..+...+...|++++|..++++...... .|+.  ..+..+...+
T Consensus       117 ~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~  196 (355)
T cd05804         117 LGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFY  196 (355)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHH
Confidence            3445556777777887777777665   34455667777777888888888888877765421 1222  2344566777


Q ss_pred             hccCcHHHHHHHHHHhHHhcCCCCChHHH-H--HHHHHHhhcCCHHHHHHH---HhhCC-CCCC---HHHHHHHHHHHHh
Q 007573          416 GHAGKVNESMDLFELMVKVYGIIPSSEHY-T--CLVDILSRAGQLEKAWQI---TQGMP-FEAD---TGVWGSLLAACVI  485 (597)
Q Consensus       416 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~-~--~l~~~~~~~g~~~~A~~~---~~~~~-~~p~---~~~~~~l~~~~~~  485 (597)
                      ...|++++|..++++........+..... +  .+...+...|....+.+.   ..... ..|.   .........++..
T Consensus       197 ~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~  276 (355)
T cd05804         197 LERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAG  276 (355)
T ss_pred             HHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhc
Confidence            77888888888888765321111221111 1  223333334422222221   11111 0011   1122245566778


Q ss_pred             cCCHHHHHHHHHHHHhcCCC---------CCchHHHHHHHHHhcCCcHHHHHHHHHHHhCC
Q 007573          486 NLNVELGELAAKKMRELDPQ---------NSAVYVMLSNLYAAAGMWRDVTRVRLLMKEQG  537 (597)
Q Consensus       486 ~g~~~~a~~~~~~~~~~~p~---------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  537 (597)
                      .|+.+.|...++.+....-.         ........+.++...|++++|.+.+......+
T Consensus       277 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a  337 (355)
T cd05804         277 AGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL  337 (355)
T ss_pred             CCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            88999999998887653211         24455677788899999999999999887654

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=98.89  E-value=3.6e-06  Score=76.37  Aligned_cols=285  Identities=13%  Similarity=0.089  Sum_probs=171.1

Q ss_pred             hHHHHHHHHHcCCChHHHHHHHccCCCCCchhHHHHH---HHHHhCCChhHHHHHHHhcc--cCCcc-hHHHHHHHHHcC
Q 007573          145 TYNAMISGFLKHGRLEEATRLFEQMPRRNVISYTAML---DGFMKKGEVDKARALSDYMS--FKNVV-SWTVMITGYVKN  218 (597)
Q Consensus       145 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li---~~~~~~g~~~~A~~~~~~m~--~~~~~-~~~~ll~~~~~~  218 (597)
                      -..-|.+.+...|++..|+.-|....+.|+..|.++.   ..|...|+...|+.=+.+..  +||-. .-..-...+.+.
T Consensus        40 khlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~  119 (504)
T KOG0624|consen   40 KHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQ  119 (504)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhc
Confidence            3344666677778888888888887777777776654   46777787777777776663  34422 222334567788


Q ss_pred             CChHHHHHHHhhcCCCCCCchHH----------------HHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHH
Q 007573          219 ERFCEARELFYRMPDYDKNVFVV----------------TAMITGFCKVGMLENARLLFERIQP---KDCVSFNAMIAGY  279 (597)
Q Consensus       219 g~~~~a~~~~~~~~~~~~~~~~~----------------~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~  279 (597)
                      |.+++|..-|+.+++..|+..+-                ...+..+.-.|+...|+.....+.+   .|...|..-..+|
T Consensus       120 Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~  199 (504)
T KOG0624|consen  120 GELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCY  199 (504)
T ss_pred             ccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHH
Confidence            99999998888888766642211                1122233334444444444444322   3444444445555


Q ss_pred             HHcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhccchhHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHH
Q 007573          280 AQNGVAEEALRLFSGMIKMDMQPDDATLVSVFTACSALQLLNEGRQSHVLVIRNGFEANVSVCNAVITMYSRCGGILDSE  359 (597)
Q Consensus       280 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~  359 (597)
                      ...|++..|+.=++...+                                   .. ..++..+..+...+...|+.+.++
T Consensus       200 i~~~e~k~AI~Dlk~ask-----------------------------------Ls-~DnTe~~ykis~L~Y~vgd~~~sL  243 (504)
T KOG0624|consen  200 IAEGEPKKAIHDLKQASK-----------------------------------LS-QDNTEGHYKISQLLYTVGDAENSL  243 (504)
T ss_pred             HhcCcHHHHHHHHHHHHh-----------------------------------cc-ccchHHHHHHHHHHHhhhhHHHHH
Confidence            555555555544443333                                   22 223333333444455555555555


Q ss_pred             HHHhccCC--CChh----hHHHH---------HHHHHHcCCHHHHHHHHHHHHHCCCCCChH---HHHHHHHHHhccCcH
Q 007573          360 LAFRQIHS--PNLV----SWNTI---------IAAFAQHGHYEKALIFFSQMGLNGFDPDGI---TFLSLLSACGHAGKV  421 (597)
Q Consensus       360 ~~~~~~~~--~~~~----~~~~l---------i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---~~~~ll~~~~~~g~~  421 (597)
                      ...++..+  ||..    .|..+         +......+++.++++..+...+.......+   .+..+-.++...|++
T Consensus       244 ~~iRECLKldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~  323 (504)
T KOG0624|consen  244 KEIRECLKLDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQF  323 (504)
T ss_pred             HHHHHHHccCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCH
Confidence            55554442  2211    11111         123455788888888888877653221222   344555677788999


Q ss_pred             HHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC
Q 007573          422 NESMDLFELMVKVYGIIPS-SEHYTCLVDILSRAGQLEKAWQITQGMP  468 (597)
Q Consensus       422 ~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~  468 (597)
                      .+|++...++.   .+.|+ ..++.--.++|.-...+++|+.-|+...
T Consensus       324 ~eAiqqC~evL---~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~  368 (504)
T KOG0624|consen  324 GEAIQQCKEVL---DIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKAL  368 (504)
T ss_pred             HHHHHHHHHHH---hcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            99999988886   55666 7888888889998999999999988875

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=98.87  E-value=1.5e-06  Score=83.77  Aligned_cols=90  Identities=14%  Similarity=0.101  Sum_probs=71.7

Q ss_pred             CCCCchhhHHHhhc------CCCcchHHHHHHHHHhcCChHHHHHHHhhcCC--CC-cchHHHHHHHHHhCCChhHHHHH
Q 007573           33 FTPHSSNCLIRLFS------TQYVFVNNAKISALSRAGKISAARQLFDQMTT--KD-VITWNAIITGYWQNGFLQESKNL  103 (597)
Q Consensus        33 ~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~~  103 (597)
                      ++......++++|-      +++.+.|+.=..+|+..|++++|.+-=.+-.+  |+ +..|+....++...|++++|+.-
T Consensus        13 ~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA~~a   92 (539)
T KOG0548|consen   13 FSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEAILA   92 (539)
T ss_pred             cccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHHHHHH
Confidence            44556677777775      77889999999999999999999886666555  33 23699999999999999999999


Q ss_pred             HhhCCCC---CcchHHHHHHHH
Q 007573          104 FQSMPVK---NIVSWNCMIAGC  122 (597)
Q Consensus       104 ~~~~~~~---~~~~~~~ll~~~  122 (597)
                      |.+-++.   |...++-+..++
T Consensus        93 y~~GL~~d~~n~~L~~gl~~a~  114 (539)
T KOG0548|consen   93 YSEGLEKDPSNKQLKTGLAQAY  114 (539)
T ss_pred             HHHHhhcCCchHHHHHhHHHhh
Confidence            9998864   566667777666

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.84  E-value=0.00016  Score=75.01  Aligned_cols=239  Identities=12%  Similarity=0.146  Sum_probs=156.8

Q ss_pred             CChhHHHHHHHHHHHcCChhHHHHHHHHhHHCCCCC-CHHHHHHHHHHHhccchhHHHHHHHHHHHHhC-----------
Q 007573          267 KDCVSFNAMIAGYAQNGVAEEALRLFSGMIKMDMQP-DDATLVSVFTACSALQLLNEGRQSHVLVIRNG-----------  334 (597)
Q Consensus       267 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----------  334 (597)
                      .|+..-..-+.++...+-+.+-+++++++.-.+-.- .......++-.-+-..+...+..+...+-..+           
T Consensus       982 ~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyDa~~ia~iai~~ 1061 (1666)
T KOG0985|consen  982 QDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIAEIAIEN 1061 (1666)
T ss_pred             CChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCCchhHHHHHhhh
Confidence            366667777888888899999999998876432111 11111111111111122222222222222111           


Q ss_pred             ------------CCCcccHHHHHHHHHHhcCCHHHHHHHHhccCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 007573          335 ------------FEANVSVCNAVITMYSRCGGILDSELAFRQIHSPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFD  402 (597)
Q Consensus       335 ------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~  402 (597)
                                  +..+....+.|++   ..+.++.|.+.-++..  .+..|+.+..+-.+.|...+|++-|-+.      
T Consensus      1062 ~LyEEAF~ifkkf~~n~~A~~VLie---~i~~ldRA~efAe~~n--~p~vWsqlakAQL~~~~v~dAieSyika------ 1130 (1666)
T KOG0985|consen 1062 QLYEEAFAIFKKFDMNVSAIQVLIE---NIGSLDRAYEFAERCN--EPAVWSQLAKAQLQGGLVKDAIESYIKA------ 1130 (1666)
T ss_pred             hHHHHHHHHHHHhcccHHHHHHHHH---HhhhHHHHHHHHHhhC--ChHHHHHHHHHHHhcCchHHHHHHHHhc------
Confidence                        0111222222221   2244444544444443  4568999999999999999999887543      


Q ss_pred             CChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 007573          403 PDGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMPFEADTGVWGSLLAA  482 (597)
Q Consensus       403 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~  482 (597)
                      -|+..|..++..+.+.|.+++-.+++...++. .-.|..+  ..|+-+|++.+++.+-++++.    .|+..-...++.-
T Consensus      1131 dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk-~~E~~id--~eLi~AyAkt~rl~elE~fi~----gpN~A~i~~vGdr 1203 (1666)
T KOG0985|consen 1131 DDPSNYLEVIDVASRTGKYEDLVKYLLMARKK-VREPYID--SELIFAYAKTNRLTELEEFIA----GPNVANIQQVGDR 1203 (1666)
T ss_pred             CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-hcCccch--HHHHHHHHHhchHHHHHHHhc----CCCchhHHHHhHH
Confidence            46678999999999999999999999877765 5555544  578999999999999877764    5888888889999


Q ss_pred             HHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcHHHHHHHH
Q 007573          483 CVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRVRL  531 (597)
Q Consensus       483 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~  531 (597)
                      |...|.++.|.-+|..        .+.|..|+..+...|.+..|...-+
T Consensus      1204 cf~~~~y~aAkl~y~~--------vSN~a~La~TLV~LgeyQ~AVD~aR 1244 (1666)
T KOG0985|consen 1204 CFEEKMYEAAKLLYSN--------VSNFAKLASTLVYLGEYQGAVDAAR 1244 (1666)
T ss_pred             HhhhhhhHHHHHHHHH--------hhhHHHHHHHHHHHHHHHHHHHHhh
Confidence            9999999988888754        3457777888888787777665433

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.83  E-value=5.7e-07  Score=82.99  Aligned_cols=181  Identities=11%  Similarity=0.049  Sum_probs=107.1

Q ss_pred             ccHHHHHHHHHHhcCCHHHHHHHHhccC--CC-Ch---hhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CC-hHHHHH
Q 007573          339 VSVCNAVITMYSRCGGILDSELAFRQIH--SP-NL---VSWNTIIAAFAQHGHYEKALIFFSQMGLNGFD-PD-GITFLS  410 (597)
Q Consensus       339 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~-~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~-~~~~~~  410 (597)
                      ...+..+...+...|++++|...|+++.  .| +.   .++..+..++...|++++|+..++++.+.... |. ..++..
T Consensus        33 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~  112 (235)
T TIGR03302        33 AEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYL  112 (235)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHH
Confidence            3445555666666677777766666554  12 11   24555566666667777777777666653211 11 113333


Q ss_pred             HHHHHhcc--------CcHHHHHHHHHHhHHhcCCCCCh-HHHHHHHHHHhhcCCHHHHHHHHhhCCCCCCHHHHHHHHH
Q 007573          411 LLSACGHA--------GKVNESMDLFELMVKVYGIIPSS-EHYTCLVDILSRAGQLEKAWQITQGMPFEADTGVWGSLLA  481 (597)
Q Consensus       411 ll~~~~~~--------g~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~  481 (597)
                      +..++...        |+.++|.+.++.+.+.   .|+. ..+..+...    +......           ......+..
T Consensus       113 ~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~----~~~~~~~-----------~~~~~~~a~  174 (235)
T TIGR03302       113 RGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRM----DYLRNRL-----------AGKELYVAR  174 (235)
T ss_pred             HHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHH----HHHHHHH-----------HHHHHHHHH
Confidence            33444332        5566666666666543   2221 122111111    0000000           001124556


Q ss_pred             HHHhcCCHHHHHHHHHHHHhcCCCC---CchHHHHHHHHHhcCCcHHHHHHHHHHHhCC
Q 007573          482 ACVINLNVELGELAAKKMRELDPQN---SAVYVMLSNLYAAAGMWRDVTRVRLLMKEQG  537 (597)
Q Consensus       482 ~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  537 (597)
                      .+...|++++|+..++++++..|++   +..+..++.++...|++++|.++++.+....
T Consensus       175 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~  233 (235)
T TIGR03302       175 FYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANY  233 (235)
T ss_pred             HHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence            6889999999999999999997765   4788999999999999999999999886543

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PRK04841 transcriptional regulator MalT; Provisional

Probab=98.83  E-value=1.4e-05  Score=89.73  Aligned_cols=357  Identities=11%  Similarity=-0.010  Sum_probs=218.9

Q ss_pred             HHHHHhCCChhHHHHHHHhcccCCcc--hHHHHHHHHHcCCChHHHHHHHhhcCC--CCCCchHHHHHHHHHHhcCCHHH
Q 007573          181 LDGFMKKGEVDKARALSDYMSFKNVV--SWTVMITGYVKNERFCEARELFYRMPD--YDKNVFVVTAMITGFCKVGMLEN  256 (597)
Q Consensus       181 i~~~~~~g~~~~A~~~~~~m~~~~~~--~~~~ll~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~  256 (597)
                      ...+...|++.+|..........+..  ............|+++.+...+..+..  ...+..........+...|++++
T Consensus       348 a~~~~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~  427 (903)
T PRK04841        348 AEAWLAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSE  427 (903)
T ss_pred             HHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHH
Confidence            34455556666665555444322211  111223344567788877777776632  11222333444555667889998


Q ss_pred             HHHHHhhcCC----CC---h-----hHHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCH----HHHHHHHHHHhccchh
Q 007573          257 ARLLFERIQP----KD---C-----VSFNAMIAGYAQNGVAEEALRLFSGMIKMDMQPDD----ATLVSVFTACSALQLL  320 (597)
Q Consensus       257 A~~~~~~~~~----~~---~-----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~ll~~~~~~~~~  320 (597)
                      |...+.....    .+   .     .....+...+...|++++|...+++....-...+.    .....+...+...|++
T Consensus       428 a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~  507 (903)
T PRK04841        428 VNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGEL  507 (903)
T ss_pred             HHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCH
Confidence            8888765421    11   1     12223344566789999999999887763111121    2233444456678999


Q ss_pred             HHHHHHHHHHHHhCCC---C--cccHHHHHHHHHHhcCCHHHHHHHHhccCC-------CC----hhhHHHHHHHHHHcC
Q 007573          321 NEGRQSHVLVIRNGFE---A--NVSVCNAVITMYSRCGGILDSELAFRQIHS-------PN----LVSWNTIIAAFAQHG  384 (597)
Q Consensus       321 ~~a~~~~~~~~~~~~~---~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~----~~~~~~li~~~~~~g  384 (597)
                      +.|...+.......-.   +  .......+...+...|+++.|...+++...       ++    ...+..+...+...|
T Consensus       508 ~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G  587 (903)
T PRK04841        508 ARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWA  587 (903)
T ss_pred             HHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhc
Confidence            9999888877653211   1  123455667778889999999888776541       11    123444556677789


Q ss_pred             CHHHHHHHHHHHHHCC--CCCC--hHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHH-----HHHHHHHhhcC
Q 007573          385 HYEKALIFFSQMGLNG--FDPD--GITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHY-----TCLVDILSRAG  455 (597)
Q Consensus       385 ~~~~A~~~~~~m~~~g--~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~-----~~l~~~~~~~g  455 (597)
                      ++++|...+.+.....  ..+.  ...+..+.......|+.++|.+.++.+............+     ...+..+...|
T Consensus       588 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  667 (903)
T PRK04841        588 RLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTG  667 (903)
T ss_pred             CHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCC
Confidence            9999999988876421  1222  2344445567778899999999988875431111111111     11224455689


Q ss_pred             CHHHHHHHHhhCCC-C-CCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC------CCchHHHHHHHHHhcCCc
Q 007573          456 QLEKAWQITQGMPF-E-ADT----GVWGSLLAACVINLNVELGELAAKKMRELDPQ------NSAVYVMLSNLYAAAGMW  523 (597)
Q Consensus       456 ~~~~A~~~~~~~~~-~-p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~------~~~~~~~l~~~~~~~g~~  523 (597)
                      +.+.|.+.+..... . ...    ..+..+..++...|+.++|...++++++....      ...++..++.++...|+.
T Consensus       668 ~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~  747 (903)
T PRK04841        668 DKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRK  747 (903)
T ss_pred             CHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCH
Confidence            99999999876551 1 111    12345666788899999999999999875211      134677888999999999


Q ss_pred             HHHHHHHHHHHhCC
Q 007573          524 RDVTRVRLLMKEQG  537 (597)
Q Consensus       524 ~~A~~~~~~~~~~~  537 (597)
                      ++|.+.+.+..+..
T Consensus       748 ~~A~~~L~~Al~la  761 (903)
T PRK04841        748 SEAQRVLLEALKLA  761 (903)
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999999998754

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=98.77  E-value=4.6e-07  Score=75.67  Aligned_cols=94  Identities=6%  Similarity=-0.185  Sum_probs=68.6

Q ss_pred             HHHHHHHHhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcC
Q 007573          444 YTCLVDILSRAGQLEKAWQITQGMP-FEA-DTGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAG  521 (597)
Q Consensus       444 ~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g  521 (597)
                      +..+...+...|++++|...|+... ..| +...|..++.++...|++++|+..|+++++++|+++.++..++.++...|
T Consensus        27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g  106 (144)
T PRK15359         27 VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMG  106 (144)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcC
Confidence            4456666777777777777777654 334 55677777777777777777777777777777777777777777777777


Q ss_pred             CcHHHHHHHHHHHhCC
Q 007573          522 MWRDVTRVRLLMKEQG  537 (597)
Q Consensus       522 ~~~~A~~~~~~~~~~~  537 (597)
                      ++++|++.++...+..
T Consensus       107 ~~~eAi~~~~~Al~~~  122 (144)
T PRK15359        107 EPGLAREAFQTAIKMS  122 (144)
T ss_pred             CHHHHHHHHHHHHHhC
Confidence            7777777777776543

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=98.77  E-value=8.7e-07  Score=78.32  Aligned_cols=147  Identities=7%  Similarity=0.080  Sum_probs=112.8

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCC
Q 007573          377 IAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQ  456 (597)
Q Consensus       377 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~  456 (597)
                      +..|...|+++.+....+.+..    |.        ..+...++.+++...++...+.  -+.+...|..+...|...|+
T Consensus        23 ~~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~~--~P~~~~~w~~Lg~~~~~~g~   88 (198)
T PRK10370         23 VGSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWRND   88 (198)
T ss_pred             HHHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCC
Confidence            3457778888776554433221    11        0122356677777777777653  34568889999999999999


Q ss_pred             HHHHHHHHhhCC-CCC-CHHHHHHHHHH-HHhcCC--HHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcHHHHHHHH
Q 007573          457 LEKAWQITQGMP-FEA-DTGVWGSLLAA-CVINLN--VELGELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRVRL  531 (597)
Q Consensus       457 ~~~A~~~~~~~~-~~p-~~~~~~~l~~~-~~~~g~--~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~  531 (597)
                      +++|...+++.. ..| +...+..+..+ +...|+  .++|.++++++++.+|+++.++..++..+.+.|++++|+..|+
T Consensus        89 ~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~  168 (198)
T PRK10370         89 YDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQ  168 (198)
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHH
Confidence            999999998875 455 56678888876 467777  5999999999999999999999999999999999999999999


Q ss_pred             HHHhCC
Q 007573          532 LMKEQG  537 (597)
Q Consensus       532 ~~~~~~  537 (597)
                      ++.+..
T Consensus       169 ~aL~l~  174 (198)
T PRK10370        169 KVLDLN  174 (198)
T ss_pred             HHHhhC
Confidence            998755

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=98.77  E-value=7e-05  Score=72.50  Aligned_cols=124  Identities=13%  Similarity=0.225  Sum_probs=85.4

Q ss_pred             CCCcchHHHHHHHHHhcCChHHHHHHHhhcCC--C-CcchHHHHHHHHHhCCChhHHHHHHhhCCCC--CcchHHHHHHH
Q 007573           47 TQYVFVNNAKISALSRAGKISAARQLFDQMTT--K-DVITWNAIITGYWQNGFLQESKNLFQSMPVK--NIVSWNCMIAG  121 (597)
Q Consensus        47 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~ll~~  121 (597)
                      +-|+.+|+.||.-+... .+++++..++++..  | .+..|..-|....+..+++....+|.+....  +...|...|+-
T Consensus        17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLnlDLW~lYl~Y   95 (656)
T KOG1914|consen   17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLNLDLWKLYLSY   95 (656)
T ss_pred             CccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHhHHHHHHHH
Confidence            78999999999987655 99999999999977  4 3447999999999999999999999998754  77778877765


Q ss_pred             HHc-CCChHHHHH----HHcc------CCCCChhhHHHHHHH---------HHcCCChHHHHHHHccCCC
Q 007573          122 CID-NDRIDDAFD----YFQA------MPERNTATYNAMISG---------FLKHGRLEEATRLFEQMPR  171 (597)
Q Consensus       122 ~~~-~~~~~~A~~----~~~~------~~~~~~~~~~~l~~~---------~~~~g~~~~A~~~~~~~~~  171 (597)
                      --+ .++...+..    .|+.      |...+...|+..+..         |..+.+++..+++++++..
T Consensus        96 VR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~  165 (656)
T KOG1914|consen   96 VRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALV  165 (656)
T ss_pred             HHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhc
Confidence            432 223222111    1111      112334455555543         3344566777788887764

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.71  E-value=3.4e-05  Score=76.26  Aligned_cols=233  Identities=12%  Similarity=0.028  Sum_probs=140.1

Q ss_pred             cCCHHHHHHHHhccCC--C-ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHH
Q 007573          352 CGGILDSELAFRQIHS--P-NLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLF  428 (597)
Q Consensus       352 ~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~  428 (597)
                      .+....+.+.+....+  | .......+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...+
T Consensus        93 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l  171 (355)
T cd05804          93 SGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFM  171 (355)
T ss_pred             ccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHH
Confidence            3455555555554332  2 23344456677889999999999999999864 444667788888999999999999999


Q ss_pred             HHhHHhcCCCCCh--HHHHHHHHHHhhcCCHHHHHHHHhhCC-CCC--C-HHHH-H--HHHHHHHhcCCHHHHHHH---H
Q 007573          429 ELMVKVYGIIPSS--EHYTCLVDILSRAGQLEKAWQITQGMP-FEA--D-TGVW-G--SLLAACVINLNVELGELA---A  496 (597)
Q Consensus       429 ~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p--~-~~~~-~--~l~~~~~~~g~~~~a~~~---~  496 (597)
                      +.........|+.  ..|..+...+...|++++|..++++.. ..|  . .... +  .++.-+...|..+.+.+.   .
T Consensus       172 ~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~  251 (355)
T cd05804         172 ESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLA  251 (355)
T ss_pred             HhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHH
Confidence            9887642222332  345678899999999999999999864 223  2 1111 1  223334445543333333   2


Q ss_pred             HHHHhcCCCC--CchHHHHHHHHHhcCCcHHHHHHHHHHHhCCCcc-CCCeeEEEECCEEEEEEeCCCCCcchHHHHHHH
Q 007573          497 KKMRELDPQN--SAVYVMLSNLYAAAGMWRDVTRVRLLMKEQGVTK-QCAYSWIEIGNKVHYFLGGDMSHPCIDKIHLEL  573 (597)
Q Consensus       497 ~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~s~~~~~~~~~~~~~~~~~~p~~~~~~~~l  573 (597)
                      .......|..  ...-...+.++...|+.++|.++++.+....... ..+..+..+.-.+- .-......++..++...|
T Consensus       252 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l-~A~~~~~~g~~~~A~~~L  330 (355)
T cd05804         252 DYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLA-EALYAFAEGNYATALELL  330 (355)
T ss_pred             HHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHH-HHHHHHHcCCHHHHHHHH
Confidence            2211111222  2223467888899999999999999987643221 00111111000000 000001245667777788


Q ss_pred             HHHHHHHhhcCCc
Q 007573          574 KRASVQMKSVDDF  586 (597)
Q Consensus       574 ~~~~~~~~~~~~~  586 (597)
                      ........+.|++
T Consensus       331 ~~al~~a~~~ggs  343 (355)
T cd05804         331 GPVRDDLARIGGS  343 (355)
T ss_pred             HHHHHHHHHhCCc
Confidence            7777777777764

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=98.69  E-value=2.9e-06  Score=90.36  Aligned_cols=198  Identities=14%  Similarity=0.116  Sum_probs=165.7

Q ss_pred             CCcccHHHHHHHHHHhcCCHHHHHHHHhccCC--------CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-hH
Q 007573          336 EANVSVCNAVITMYSRCGGILDSELAFRQIHS--------PNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPD-GI  406 (597)
Q Consensus       336 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~  406 (597)
                      |.+...|-..|......++.++|++++++..+        .-...|.+++......|.-+...++|+++.+.   -| -.
T Consensus      1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy---cd~~~ 1531 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY---CDAYT 1531 (1710)
T ss_pred             CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh---cchHH
Confidence            55667788888888899999999999887762        12347888888888888888999999999863   33 34


Q ss_pred             HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCCC---HHHHHHHHHH
Q 007573          407 TFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMP-FEAD---TGVWGSLLAA  482 (597)
Q Consensus       407 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~---~~~~~~l~~~  482 (597)
                      .|..|...|.+.+..++|.++++.|.+.++  -....|...++.+.+..+-++|..++++.. .-|.   .....-.+..
T Consensus      1532 V~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqL 1609 (1710)
T KOG1070|consen 1532 VHLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQL 1609 (1710)
T ss_pred             HHHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHH
Confidence            688889999999999999999999999766  567789999999999999999999998754 3333   3455556666


Q ss_pred             HHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHhCCC
Q 007573          483 CVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRVRLLMKEQGV  538 (597)
Q Consensus       483 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  538 (597)
                      -.+.||.+++..+|+..+.-.|.-...|..+++.-.+.|+.+.++.+|+++...++
T Consensus      1610 EFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l 1665 (1710)
T KOG1070|consen 1610 EFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKL 1665 (1710)
T ss_pred             HhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCC
Confidence            77899999999999999999999999999999999999999999999999998876

>PRK04841 transcriptional regulator MalT; Provisional

Probab=98.68  E-value=5.8e-05  Score=84.74  Aligned_cols=355  Identities=12%  Similarity=0.006  Sum_probs=222.7

Q ss_pred             HHHHHcCCChHHHHHHHccCCCCCch--hHHHHHHHHHhCCChhHHHHHHHhcc----cCCcchHHHHHHHHHcCCChHH
Q 007573          150 ISGFLKHGRLEEATRLFEQMPRRNVI--SYTAMLDGFMKKGEVDKARALSDYMS----FKNVVSWTVMITGYVKNERFCE  223 (597)
Q Consensus       150 ~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~m~----~~~~~~~~~ll~~~~~~g~~~~  223 (597)
                      ...+...|++.+|..........+..  ............|+++.+..+++.+.    ..+..........+...|++++
T Consensus       348 a~~~~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~  427 (903)
T PRK04841        348 AEAWLAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSE  427 (903)
T ss_pred             HHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHH
Confidence            34455566666666655554432211  11222344556788888888877762    1233333445556677899999


Q ss_pred             HHHHHhhcCCC-C-------CCc--hHHHHHHHHHHhcCCHHHHHHHHhhcCC----CCh----hHHHHHHHHHHHcCCh
Q 007573          224 ARELFYRMPDY-D-------KNV--FVVTAMITGFCKVGMLENARLLFERIQP----KDC----VSFNAMIAGYAQNGVA  285 (597)
Q Consensus       224 a~~~~~~~~~~-~-------~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~----~~~~~li~~~~~~g~~  285 (597)
                      +...+..+... .       +..  .....+...+...|++++|...+++...    .+.    ...+.+...+...|++
T Consensus       428 a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~  507 (903)
T PRK04841        428 VNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGEL  507 (903)
T ss_pred             HHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCH
Confidence            99988876441 1       111  1222334556789999999998887532    222    2456677778889999


Q ss_pred             hHHHHHHHHhHHCCC---CCC--HHHHHHHHHHHhccchhHHHHHHHHHHHHh----CCCC---cccHHHHHHHHHHhcC
Q 007573          286 EEALRLFSGMIKMDM---QPD--DATLVSVFTACSALQLLNEGRQSHVLVIRN----GFEA---NVSVCNAVITMYSRCG  353 (597)
Q Consensus       286 ~~A~~~~~~m~~~g~---~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~---~~~~~~~l~~~~~~~g  353 (597)
                      ++|...+.+.....-   .+.  ......+...+...|+++.|...+......    +...   ....+..+...+...|
T Consensus       508 ~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G  587 (903)
T PRK04841        508 ARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWA  587 (903)
T ss_pred             HHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhc
Confidence            999999988765311   111  223444555677889999999988776653    2211   1223445666777889


Q ss_pred             CHHHHHHHHhccCC------C--ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCC--CCCChH--HH--HHHHHHHhccC
Q 007573          354 GILDSELAFRQIHS------P--NLVSWNTIIAAFAQHGHYEKALIFFSQMGLNG--FDPDGI--TF--LSLLSACGHAG  419 (597)
Q Consensus       354 ~~~~A~~~~~~~~~------~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~--~~--~~ll~~~~~~g  419 (597)
                      ++++|...+++...      +  ....+..+...+...|++++|.+.+.+.....  ......  ..  ...+..+...|
T Consensus       588 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  667 (903)
T PRK04841        588 RLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTG  667 (903)
T ss_pred             CHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCC
Confidence            99999988877641      1  12344446667788999999999998875421  111110  10  11123345578


Q ss_pred             cHHHHHHHHHHhHHhcCCCCCh----HHHHHHHHHHhhcCCHHHHHHHHhhCC-------CCCC-HHHHHHHHHHHHhcC
Q 007573          420 KVNESMDLFELMVKVYGIIPSS----EHYTCLVDILSRAGQLEKAWQITQGMP-------FEAD-TGVWGSLLAACVINL  487 (597)
Q Consensus       420 ~~~~a~~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~p~-~~~~~~l~~~~~~~g  487 (597)
                      +.+.|.+.+...... . ....    ..+..+..++...|+.++|...+++..       ..++ ..+...+..++...|
T Consensus       668 ~~~~A~~~l~~~~~~-~-~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G  745 (903)
T PRK04841        668 DKEAAANWLRQAPKP-E-FANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQG  745 (903)
T ss_pred             CHHHHHHHHHhcCCC-C-CccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcC
Confidence            999999887665431 1 1111    113467778889999999999988764       1111 235566677789999


Q ss_pred             CHHHHHHHHHHHHhcCCCC
Q 007573          488 NVELGELAAKKMRELDPQN  506 (597)
Q Consensus       488 ~~~~a~~~~~~~~~~~p~~  506 (597)
                      +.++|...+.+++++....
T Consensus       746 ~~~~A~~~L~~Al~la~~~  764 (903)
T PRK04841        746 RKSEAQRVLLEALKLANRT  764 (903)
T ss_pred             CHHHHHHHHHHHHHHhCcc
Confidence            9999999999999986554

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.67  E-value=7.8e-06  Score=72.80  Aligned_cols=286  Identities=13%  Similarity=0.099  Sum_probs=152.6

Q ss_pred             HHHHHHHHHcCCChHHHHHHHhhcCCCCC-CchHHHHHHHHHHhcCCHHHHHHHHhhcCCC--ChhHHH-HHHHHHHHcC
Q 007573          208 WTVMITGYVKNERFCEARELFYRMPDYDK-NVFVVTAMITGFCKVGMLENARLLFERIQPK--DCVSFN-AMIAGYAQNG  283 (597)
Q Consensus       208 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~-~li~~~~~~g  283 (597)
                      +.+.+..+.+..+++.|++++..-.+..| +......|..+|-...++..|-..++++...  ...-|. --...+.+.+
T Consensus        13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~   92 (459)
T KOG4340|consen   13 FTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKAC   92 (459)
T ss_pred             hHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhc
Confidence            44455555666667777776665555444 4444555666666667777777777665542  222222 1234455666


Q ss_pred             ChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhccchhHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHh
Q 007573          284 VAEEALRLFSGMIKMDMQPDDATLVSVFTACSALQLLNEGRQSHVLVIRNGFEANVSVCNAVITMYSRCGGILDSELAFR  363 (597)
Q Consensus       284 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~  363 (597)
                      .+..|+++...|...   |+...-..-+.+.                                 .....+++..++.+.+
T Consensus        93 i~ADALrV~~~~~D~---~~L~~~~lqLqaA---------------------------------IkYse~Dl~g~rsLve  136 (459)
T KOG4340|consen   93 IYADALRVAFLLLDN---PALHSRVLQLQAA---------------------------------IKYSEGDLPGSRSLVE  136 (459)
T ss_pred             ccHHHHHHHHHhcCC---HHHHHHHHHHHHH---------------------------------HhcccccCcchHHHHH
Confidence            667777766665532   2211111111110                                 0111233344444444


Q ss_pred             ccC-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCC----
Q 007573          364 QIH-SPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMVKVYGII----  438 (597)
Q Consensus       364 ~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~----  438 (597)
                      +.. +.+..+.+.......+.|++++|++-|+...+-|--.....|+..+. ..+.|+.+.|.++..+++.+ |++    
T Consensus       137 Qlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALa-Hy~~~qyasALk~iSEIieR-G~r~HPE  214 (459)
T KOG4340|consen  137 QLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALA-HYSSRQYASALKHISEIIER-GIRQHPE  214 (459)
T ss_pred             hccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHH-HHhhhhHHHHHHHHHHHHHh-hhhcCCc
Confidence            443 22233333333333344555555555544443221112223333222 22334444444444444433 221    


Q ss_pred             ---------CC--------h-------HHHHHHHHHHhhcCCHHHHHHHHhhCC----CCCCHHHHHHHHHHHHhcCCHH
Q 007573          439 ---------PS--------S-------EHYTCLVDILSRAGQLEKAWQITQGMP----FEADTGVWGSLLAACVINLNVE  490 (597)
Q Consensus       439 ---------p~--------~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~~~~~~~l~~~~~~~g~~~  490 (597)
                               ||        .       ..++.-...+.+.|+++.|.+-+-.|+    .+.|+.|...+.-. -..+++-
T Consensus       215 lgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~  293 (459)
T KOG4340|consen  215 LGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPT  293 (459)
T ss_pred             cCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCcc
Confidence                     11        1       122223344568899999999999987    34567777655433 2345666


Q ss_pred             HHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcHHHHHHHHH
Q 007573          491 LGELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRVRLL  532 (597)
Q Consensus       491 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~  532 (597)
                      .+.+-+.-+++++|-++.++..++-.|++..-++-|..++-+
T Consensus       294 ~g~~KLqFLL~~nPfP~ETFANlLllyCKNeyf~lAADvLAE  335 (459)
T KOG4340|consen  294 EGFEKLQFLLQQNPFPPETFANLLLLYCKNEYFDLAADVLAE  335 (459)
T ss_pred             ccHHHHHHHHhcCCCChHHHHHHHHHHhhhHHHhHHHHHHhh
Confidence            677777778889999999999999999999999888887654

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=98.66  E-value=2e-06  Score=70.45  Aligned_cols=118  Identities=9%  Similarity=-0.003  Sum_probs=99.0

Q ss_pred             hHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 007573          441 SEHYTCLVDILSRAGQLEKAWQITQGMP-FEA-DTGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYA  518 (597)
Q Consensus       441 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~  518 (597)
                      ....-.+...+...|++++|.++|+.+. ..| +..-|..|..+|...|++++|+..|.++..++|++|..+..++.++.
T Consensus        35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L  114 (157)
T PRK15363         35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYL  114 (157)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence            4455567777889999999999999865 455 56689999999999999999999999999999999999999999999


Q ss_pred             hcCCcHHHHHHHHHHHhCCCccCCCeeEEEECCEEEEEEeCCCCCcchHHHHHHHHHHHHHHh
Q 007573          519 AAGMWRDVTRVRLLMKEQGVTKQCAYSWIEIGNKVHYFLGGDMSHPCIDKIHLELKRASVQMK  581 (597)
Q Consensus       519 ~~g~~~~A~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~  581 (597)
                      ..|+.+.|.+-|+......-                       .+|+..++...-+.+...+.
T Consensus       115 ~lG~~~~A~~aF~~Ai~~~~-----------------------~~~~~~~l~~~A~~~L~~l~  154 (157)
T PRK15363        115 ACDNVCYAIKALKAVVRICG-----------------------EVSEHQILRQRAEKMLQQLS  154 (157)
T ss_pred             HcCCHHHHHHHHHHHHHHhc-----------------------cChhHHHHHHHHHHHHHHhh
Confidence            99999999999998876331                       36777777776666665554

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=98.64  E-value=1.1e-06  Score=73.47  Aligned_cols=123  Identities=11%  Similarity=-0.048  Sum_probs=97.8

Q ss_pred             HHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC-C
Q 007573          391 IFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMP-F  469 (597)
Q Consensus       391 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~  469 (597)
                      .++++..+.  .|+.  +.....++...|++++|...|+.+...  -+.+...+..+..++.+.|++++|...|++.. .
T Consensus        14 ~~~~~al~~--~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l   87 (144)
T PRK15359         14 DILKQLLSV--DPET--VYASGYASWQEGDYSRAVIDFSWLVMA--QPWSWRAHIALAGTWMMLKEYTTAINFYGHALML   87 (144)
T ss_pred             HHHHHHHHc--CHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence            445555442  4443  455677788899999999999988752  23457888889999999999999999998876 4


Q ss_pred             CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHh
Q 007573          470 EA-DTGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAA  519 (597)
Q Consensus       470 ~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~  519 (597)
                      .| +...+..++.++...|+.++|+..+++++++.|+++..+...+.+...
T Consensus        88 ~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~  138 (144)
T PRK15359         88 DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIM  138 (144)
T ss_pred             CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence            44 677899999999999999999999999999999999988887776543

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.64  E-value=3.7e-06  Score=73.93  Aligned_cols=155  Identities=12%  Similarity=0.140  Sum_probs=101.1

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhh
Q 007573          374 NTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSR  453 (597)
Q Consensus       374 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~  453 (597)
                      ..+-..+...|+-+....+....... .+-|.......+....+.|++.+|...+++...  .-++|.+.|+.+.-+|.+
T Consensus        70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaaldq  146 (257)
T COG5010          70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALDQ  146 (257)
T ss_pred             HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHHH
Confidence            33445555566666666665554321 122334444566666777777777777777654  445667777777777777


Q ss_pred             cCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcHHHHHHHH
Q 007573          454 AGQLEKAWQITQGMP-FEA-DTGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRVRL  531 (597)
Q Consensus       454 ~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~  531 (597)
                      .|++++|..-|.+.. ..| ++...+.+...+.-.|+.+.|+.++..+....+.++.+-..+..+....|++++|..+-.
T Consensus       147 ~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~  226 (257)
T COG5010         147 LGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAV  226 (257)
T ss_pred             ccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence            777777777666544 333 455667777777777777777777777777777777777777777777777777776543

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.63  E-value=4.4e-06  Score=73.48  Aligned_cols=134  Identities=16%  Similarity=0.128  Sum_probs=113.3

Q ss_pred             CCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHH
Q 007573          402 DPDGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMP--FEADTGVWGSL  479 (597)
Q Consensus       402 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l  479 (597)
                      .|+......+-..+...|+-+....+......  ..+-|......++....+.|++.+|...+++..  .++|...|+.+
T Consensus        63 ~p~d~~i~~~a~a~~~~G~a~~~l~~~~~~~~--~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~l  140 (257)
T COG5010          63 NPEDLSIAKLATALYLRGDADSSLAVLQKSAI--AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLL  140 (257)
T ss_pred             CcchHHHHHHHHHHHhcccccchHHHHhhhhc--cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHH
Confidence            55433336666778888888888888776543  333456677779999999999999999999876  56688899999


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHhCC
Q 007573          480 LAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRVRLLMKEQG  537 (597)
Q Consensus       480 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  537 (597)
                      ..+|.+.|++++|...|.+++++.|.++.++++++-.|.-.|+++.|..++......+
T Consensus       141 gaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~  198 (257)
T COG5010         141 GAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP  198 (257)
T ss_pred             HHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence            9999999999999999999999999999999999999999999999999999887654

>PLN02789 farnesyltranstransferase

Probab=98.59  E-value=1.9e-05  Score=75.11  Aligned_cols=176  Identities=10%  Similarity=0.033  Sum_probs=110.8

Q ss_pred             HHHHHHHHhccC---CCChhhHHHHHHHHHHcCCH--HHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHH
Q 007573          355 ILDSELAFRQIH---SPNLVSWNTIIAAFAQHGHY--EKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFE  429 (597)
Q Consensus       355 ~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~--~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~  429 (597)
                      +++++..++++.   +.+..+|+.....+.+.|+.  ++++++++++.+.. +-|..+|.....++...|+++++++.++
T Consensus        88 l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~  166 (320)
T PLN02789         88 LEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCH  166 (320)
T ss_pred             HHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence            455555554443   34444555544444444542  56677777776543 3345667766677777777788888777


Q ss_pred             HhHHhcCCCCChHHHHHHHHHHhhc---CCH----HHHHHHHhhC-CCCC-CHHHHHHHHHHHHhc----CCHHHHHHHH
Q 007573          430 LMVKVYGIIPSSEHYTCLVDILSRA---GQL----EKAWQITQGM-PFEA-DTGVWGSLLAACVIN----LNVELGELAA  496 (597)
Q Consensus       430 ~~~~~~~~~p~~~~~~~l~~~~~~~---g~~----~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~----g~~~~a~~~~  496 (597)
                      ++++. + .-+...|+....++.+.   |+.    +++.++..++ ...| |...|+.+...+...    +...+|...+
T Consensus       167 ~~I~~-d-~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~  244 (320)
T PLN02789        167 QLLEE-D-VRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVC  244 (320)
T ss_pred             HHHHH-C-CCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHH
Confidence            77764 2 22345555555554443   222    3556665443 3445 566888888887763    3456788899


Q ss_pred             HHHHhcCCCCCchHHHHHHHHHhcC------------------CcHHHHHHHHHH
Q 007573          497 KKMRELDPQNSAVYVMLSNLYAAAG------------------MWRDVTRVRLLM  533 (597)
Q Consensus       497 ~~~~~~~p~~~~~~~~l~~~~~~~g------------------~~~~A~~~~~~~  533 (597)
                      .++.+.+|+++.++..|+++|....                  ..++|.++++.+
T Consensus       245 ~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l  299 (320)
T PLN02789        245 LEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSEL  299 (320)
T ss_pred             HHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHH
Confidence            9988889998999999999998743                  236677777777

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.59  E-value=5.4e-06  Score=86.86  Aligned_cols=126  Identities=11%  Similarity=0.015  Sum_probs=60.2

Q ss_pred             hHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCCC-HHHHHHHHH
Q 007573          405 GITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPS-SEHYTCLVDILSRAGQLEKAWQITQGMP-FEAD-TGVWGSLLA  481 (597)
Q Consensus       405 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~  481 (597)
                      ...+..|.....+.|.+++|..+++.+.   .+.|+ ......++..+.+.+++++|...+++.. ..|+ ......+..
T Consensus        86 ~~~~~~La~i~~~~g~~~ea~~~l~~~~---~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~  162 (694)
T PRK15179         86 ELFQVLVARALEAAHRSDEGLAVWRGIH---QRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAK  162 (694)
T ss_pred             HHHHHHHHHHHHHcCCcHHHHHHHHHHH---hhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHH
Confidence            4444444444455555555555555444   22343 3334444445555555555555544433 3333 223344444


Q ss_pred             HHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcHHHHHHHHHH
Q 007573          482 ACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRVRLLM  533 (597)
Q Consensus       482 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  533 (597)
                      ++.+.|++++|..+|++++..+|+++.++..++.++...|+.++|...|++.
T Consensus       163 ~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a  214 (694)
T PRK15179        163 SWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAG  214 (694)
T ss_pred             HHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            4445555555555555555544444555555555555555555555555444

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.55  E-value=3.5e-05  Score=73.91  Aligned_cols=177  Identities=15%  Similarity=0.053  Sum_probs=121.5

Q ss_pred             CHHHHHHHHhccC------CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHH
Q 007573          354 GILDSELAFRQIH------SPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDL  427 (597)
Q Consensus       354 ~~~~A~~~~~~~~------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~  427 (597)
                      ++.+++..-+.++      .++...+...+.+.........+-.++-+-.+.  .-...-|.. .......|++++|+..
T Consensus       252 RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~--~~~aa~YG~-A~~~~~~~~~d~A~~~  328 (484)
T COG4783         252 RIADLRNRAEQSPPYNKLDSPDFQLARARIRAKYEALPNQQAADLLAKRSKR--GGLAAQYGR-ALQTYLAGQYDEALKL  328 (484)
T ss_pred             HHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhccccccchHHHHHHHhCc--cchHHHHHH-HHHHHHhcccchHHHH
Confidence            4555555555555      345555666655544333333333333222220  111222333 3344567888999999


Q ss_pred             HHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 007573          428 FELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMP-FEAD-TGVWGSLLAACVINLNVELGELAAKKMRELDPQ  505 (597)
Q Consensus       428 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~  505 (597)
                      ++.+.+  ..+-|+.......+.+.+.++.++|.+.++++. ..|+ ...+..+..++.+.|++.+|+..+......+|+
T Consensus       329 l~~L~~--~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~  406 (484)
T COG4783         329 LQPLIA--AQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPE  406 (484)
T ss_pred             HHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC
Confidence            998876  344557777778889999999999999998876 6676 567788888899999999999999999999999


Q ss_pred             CCchHHHHHHHHHhcCCcHHHHHHHHHHHh
Q 007573          506 NSAVYVMLSNLYAAAGMWRDVTRVRLLMKE  535 (597)
Q Consensus       506 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  535 (597)
                      ++..|..|+.+|..+|+..+|...+.+...
T Consensus       407 dp~~w~~LAqay~~~g~~~~a~~A~AE~~~  436 (484)
T COG4783         407 DPNGWDLLAQAYAELGNRAEALLARAEGYA  436 (484)
T ss_pred             CchHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence            999999999999988888877777666543

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.55  E-value=5.5e-06  Score=80.67  Aligned_cols=255  Identities=16%  Similarity=0.108  Sum_probs=167.7

Q ss_pred             HHHHHhcCCHHHHHHHHhhcCCCC---hhHHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCH-HHHHHHHHHHhccchh
Q 007573          245 ITGFCKVGMLENARLLFERIQPKD---CVSFNAMIAGYAQNGVAEEALRLFSGMIKMDMQPDD-ATLVSVFTACSALQLL  320 (597)
Q Consensus       245 ~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~  320 (597)
                      ..-+.+.|++.+|.-.|+...+.|   ...|-.|...-..+++-..|+..+++.++.  .|+. .....|.-.|...|.-
T Consensus       292 G~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~L--dP~NleaLmaLAVSytNeg~q  369 (579)
T KOG1125|consen  292 GCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLEL--DPTNLEALMALAVSYTNEGLQ  369 (579)
T ss_pred             HHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhc--CCccHHHHHHHHHHHhhhhhH
Confidence            344567777888887787766543   357777777777777777787777777763  4543 3344444455566665


Q ss_pred             HHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHhccCCCChhhHHHHHHHHHHcCCHHHHHHHHHHH-HHC
Q 007573          321 NEGRQSHVLVIRNGFEANVSVCNAVITMYSRCGGILDSELAFRQIHSPNLVSWNTIIAAFAQHGHYEKALIFFSQM-GLN  399 (597)
Q Consensus       321 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~  399 (597)
                      ..|...+..-+....+.-   +       ...             ..++...-+.  ..+..........++|-++ ...
T Consensus       370 ~~Al~~L~~Wi~~~p~y~---~-------l~~-------------a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~  424 (579)
T KOG1125|consen  370 NQALKMLDKWIRNKPKYV---H-------LVS-------------AGENEDFENT--KSFLDSSHLAHIQELFLEAARQL  424 (579)
T ss_pred             HHHHHHHHHHHHhCccch---h-------ccc-------------cCccccccCC--cCCCCHHHHHHHHHHHHHHHHhC
Confidence            666666555544432110   0       000             0000000000  0111112233444555444 445


Q ss_pred             CCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCCCH-HHH
Q 007573          400 GFDPDGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPS-SEHYTCLVDILSRAGQLEKAWQITQGMP-FEADT-GVW  476 (597)
Q Consensus       400 g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~-~~~  476 (597)
                      +..+|+.....|.-.|--.|++++|...|+.+..   ++|+ ...|+.|.-.++...+.++|...|++.. ++|.- .++
T Consensus       425 ~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~---v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~R  501 (579)
T KOG1125|consen  425 PTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQ---VKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVR  501 (579)
T ss_pred             CCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHh---cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeee
Confidence            5457788888888888899999999999999885   4565 7789999999999999999999999876 78874 488


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhcCCCC----------CchHHHHHHHHHhcCCcHHHHHH
Q 007573          477 GSLLAACVINLNVELGELAAKKMRELDPQN----------SAVYVMLSNLYAAAGMWRDVTRV  529 (597)
Q Consensus       477 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~----------~~~~~~l~~~~~~~g~~~~A~~~  529 (597)
                      ..|+-+|...|.+++|...|-.++.+.+..          ..++..|=.++...++.|-+.+.
T Consensus       502 yNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a  564 (579)
T KOG1125|consen  502 YNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA  564 (579)
T ss_pred             hhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence            889999999999999999999999876551          13566666667777776644443

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=98.53  E-value=9.1e-06  Score=71.87  Aligned_cols=154  Identities=12%  Similarity=0.105  Sum_probs=115.2

Q ss_pred             HHHHHhcCCHHHHHHHHhccCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHH
Q 007573          346 ITMYSRCGGILDSELAFRQIHSPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESM  425 (597)
Q Consensus       346 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~  425 (597)
                      +-.|...|+++.+....+.+..+. .       .+...++.++++..+++..+.. +.|...|..+...+...|++++|.
T Consensus        23 ~~~Y~~~g~~~~v~~~~~~~~~~~-~-------~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~   93 (198)
T PRK10370         23 VGSYLLSPKWQAVRAEYQRLADPL-H-------QFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNAL   93 (198)
T ss_pred             HHHHHHcchHHHHHHHHHHHhCcc-c-------cccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence            456777777777655544332221 0       1122566788888888877653 556778888889999999999999


Q ss_pred             HHHHHhHHhcCCCCChHHHHHHHHHH-hhcCC--HHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007573          426 DLFELMVKVYGIIPSSEHYTCLVDIL-SRAGQ--LEKAWQITQGMP-FEA-DTGVWGSLLAACVINLNVELGELAAKKMR  500 (597)
Q Consensus       426 ~~~~~~~~~~~~~p~~~~~~~l~~~~-~~~g~--~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  500 (597)
                      ..|+...+.  .+.+...+..+..++ ...|+  .++|.+++++.. ..| +...+..+...+...|++++|+..+++++
T Consensus        94 ~a~~~Al~l--~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL  171 (198)
T PRK10370         94 LAYRQALQL--RGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVL  171 (198)
T ss_pred             HHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            999988753  233577888888864 67777  599999999876 555 56788888899999999999999999999


Q ss_pred             hcCCCCCchH
Q 007573          501 ELDPQNSAVY  510 (597)
Q Consensus       501 ~~~p~~~~~~  510 (597)
                      ++.|.+..-+
T Consensus       172 ~l~~~~~~r~  181 (198)
T PRK10370        172 DLNSPRVNRT  181 (198)
T ss_pred             hhCCCCccHH
Confidence            9998876544

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.52  E-value=5.7e-06  Score=82.70  Aligned_cols=209  Identities=13%  Similarity=0.043  Sum_probs=150.7

Q ss_pred             HHHHhccchhHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHhccC--CCChhhHHHHHHHHHHcCCHHH
Q 007573          311 FTACSALQLLNEGRQSHVLVIRNGFEANVSVCNAVITMYSRCGGILDSELAFRQIH--SPNLVSWNTIIAAFAQHGHYEK  388 (597)
Q Consensus       311 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~  388 (597)
                      ...+...|-...|..+++..         ..+..++.+|...|+..+|..+..+..  +|+...|..+.+......-+++
T Consensus       405 aell~slGitksAl~I~Erl---------emw~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv~~d~s~yEk  475 (777)
T KOG1128|consen  405 AELLLSLGITKSALVIFERL---------EMWDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDVLHDPSLYEK  475 (777)
T ss_pred             HHHHHHcchHHHHHHHHHhH---------HHHHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhhccChHHHHH
Confidence            33444555566666655543         245566777777777777777765544  5666677777666665556677


Q ss_pred             HHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC
Q 007573          389 ALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMP  468 (597)
Q Consensus       389 A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  468 (597)
                      |.++.+.-...       .-..+.....+.++++++.+.|+.-.+.+  +....+|-.+..+..+.++++.|.+.|....
T Consensus       476 awElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n--plq~~~wf~~G~~ALqlek~q~av~aF~rcv  546 (777)
T KOG1128|consen  476 AWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN--PLQLGTWFGLGCAALQLEKEQAAVKAFHRCV  546 (777)
T ss_pred             HHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC--ccchhHHHhccHHHHHHhhhHHHHHHHHHHh
Confidence            77776654321       11122222334678888888887765432  2235677778888889999999999998766


Q ss_pred             -CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHhCC
Q 007573          469 -FEAD-TGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRVRLLMKEQG  537 (597)
Q Consensus       469 -~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  537 (597)
                       ..|| ...||.+-.+|.+.|+-.+|...+.++++-+-++...+.+..-+..+-|.|++|++.+.++.+..
T Consensus       547 tL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~  617 (777)
T KOG1128|consen  547 TLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLR  617 (777)
T ss_pred             hcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence             6776 45899999999999999999999999999998888888888899999999999999999997643

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=98.50  E-value=0.0011  Score=64.57  Aligned_cols=121  Identities=10%  Similarity=0.212  Sum_probs=82.9

Q ss_pred             CCcchHHHHHHHHHhCCChhHHHHHHhhCCCC---CcchHHHHHHHHHcCCChHHHHHHHccCC--CCChhhHHHHHHHH
Q 007573           79 KDVITWNAIITGYWQNGFLQESKNLFQSMPVK---NIVSWNCMIAGCIDNDRIDDAFDYFQAMP--ERNTATYNAMISGF  153 (597)
Q Consensus        79 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~l~~~~  153 (597)
                      -|+.+|+.||.-+-.+ .++++...++++..+   .+..|..-|..-.+..+++....+|.+.+  .-+...|...++--
T Consensus        18 ~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLnlDLW~lYl~YV   96 (656)
T KOG1914|consen   18 YDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLNLDLWKLYLSYV   96 (656)
T ss_pred             ccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHhHHHHHHHHH
Confidence            3677999999977555 999999999999865   77889999999999999999999999988  45677777666533


Q ss_pred             Hc-CCChHHHH----HHHc----c--CCCCCchhHHHHHHH---------HHhCCChhHHHHHHHhc
Q 007573          154 LK-HGRLEEAT----RLFE----Q--MPRRNVISYTAMLDG---------FMKKGEVDKARALSDYM  200 (597)
Q Consensus       154 ~~-~g~~~~A~----~~~~----~--~~~~~~~~~~~li~~---------~~~~g~~~~A~~~~~~m  200 (597)
                      .+ .|+...++    +.|+    +  |.-.+...|+..+..         +..+.+++...++|.++
T Consensus        97 R~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqra  163 (656)
T KOG1914|consen   97 RETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRA  163 (656)
T ss_pred             HHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHH
Confidence            32 23333221    1222    1  111233445555543         33345677778888887

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.49  E-value=4e-05  Score=67.00  Aligned_cols=167  Identities=15%  Similarity=0.156  Sum_probs=119.9

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHhccC---CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhcc
Q 007573          342 CNAVITMYSRCGGILDSELAFRQIH---SPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHA  418 (597)
Q Consensus       342 ~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~  418 (597)
                      +..++-+....|+.+.|..+++.+.   +.+..+-..-...+-..|++++|+++++...+.. +.|.+++..-+...-..
T Consensus        55 ~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~  133 (289)
T KOG3060|consen   55 YEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQ  133 (289)
T ss_pred             HHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHc
Confidence            3334444555667777777776654   1111111111122344789999999999998775 55677777766667777


Q ss_pred             CcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcC---CHHHHH
Q 007573          419 GKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMP-FEA-DTGVWGSLLAACVINL---NVELGE  493 (597)
Q Consensus       419 g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g---~~~~a~  493 (597)
                      |+.-+|++-+....+  .+..|.+.|.-+.+.|...|++++|.-.++++. ..| ++..+..+...+...|   +.+.|.
T Consensus       134 GK~l~aIk~ln~YL~--~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~ar  211 (289)
T KOG3060|consen  134 GKNLEAIKELNEYLD--KFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELAR  211 (289)
T ss_pred             CCcHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            887888888888877  567889999999999999999999999999987 666 4556677777744433   678899


Q ss_pred             HHHHHHHhcCCCCCchHH
Q 007573          494 LAAKKMRELDPQNSAVYV  511 (597)
Q Consensus       494 ~~~~~~~~~~p~~~~~~~  511 (597)
                      ++|.+++++.|.+...+.
T Consensus       212 kyy~~alkl~~~~~ral~  229 (289)
T KOG3060|consen  212 KYYERALKLNPKNLRALF  229 (289)
T ss_pred             HHHHHHHHhChHhHHHHH
Confidence            999999999997654443

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=98.46  E-value=4.2e-05  Score=81.87  Aligned_cols=219  Identities=13%  Similarity=0.107  Sum_probs=170.0

Q ss_pred             CcchHHHHHHHHHcCCChHHHHHHHhhcCC-CCCC-----chHHHHHHHHHHhcCCHHHHHHHHhhcCCC-C-hhHHHHH
Q 007573          204 NVVSWTVMITGYVKNERFCEARELFYRMPD-YDKN-----VFVVTAMITGFCKVGMLENARLLFERIQPK-D-CVSFNAM  275 (597)
Q Consensus       204 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~-~~~~~~l  275 (597)
                      ....|...|.-..+.++.++|.++.++++. +.+.     ..+|.+++++-..-|.-+...++|+++.+- | ...|..|
T Consensus      1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~L 1536 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLKL 1536 (1710)
T ss_pred             cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHHH
Confidence            346788888888899999999999998876 4332     347888888888888888889999988763 3 3578889


Q ss_pred             HHHHHHcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhccchhHHHHHHHHHHHHhCCC-CcccHHHHHHHHHHhcCC
Q 007573          276 IAGYAQNGVAEEALRLFSGMIKMDMQPDDATLVSVFTACSALQLLNEGRQSHVLVIRNGFE-ANVSVCNAVITMYSRCGG  354 (597)
Q Consensus       276 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~  354 (597)
                      ...|.+.+..++|.++|+.|.+. +.-....|...+..+.+.++-+.|..++..+++.-.+ -........+.+-.+.|+
T Consensus      1537 ~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GD 1615 (1710)
T KOG1070|consen 1537 LGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGD 1615 (1710)
T ss_pred             HHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCC
Confidence            99999999999999999999875 3456677888888888888889999998888876422 134556667777888999


Q ss_pred             HHHHHHHHhccC---CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChH--HHHHHHHHHhccCcHHH
Q 007573          355 ILDSELAFRQIH---SPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGI--TFLSLLSACGHAGKVNE  423 (597)
Q Consensus       355 ~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--~~~~ll~~~~~~g~~~~  423 (597)
                      .+.++.+|+...   +.-...|+..|..-.++|+.+.+..+|++....++.|...  .|...+..--+.|+-+.
T Consensus      1616 aeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~ 1689 (1710)
T KOG1070|consen 1616 AERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKN 1689 (1710)
T ss_pred             chhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhh
Confidence            999999999887   4456789999999999999999999999999988877633  44444444334444433

>PF12854 PPR_1: PPR repeat

Probab=98.45  E-value=3.4e-07  Score=54.24  Aligned_cols=32  Identities=28%  Similarity=0.568  Sum_probs=21.3

Q ss_pred             CCCCChHHHHHHHHHHhhcCCHHHHHHHHhhC
Q 007573          436 GIIPSSEHYTCLVDILSRAGQLEKAWQITQGM  467 (597)
Q Consensus       436 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~  467 (597)
                      |+.||..+|++||++|++.|++++|.++|++|
T Consensus         2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M   33 (34)
T PF12854_consen    2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM   33 (34)
T ss_pred             CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence            56666666666666666666666666666665

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.44  E-value=2.1e-05  Score=72.54  Aligned_cols=180  Identities=9%  Similarity=-0.048  Sum_probs=126.3

Q ss_pred             CHHHHHHHHHHHhccchhHHHHHHHHHHHHhCCCCc---ccHHHHHHHHHHhcCCHHHHHHHHhccC--CC-Chh---hH
Q 007573          303 DDATLVSVFTACSALQLLNEGRQSHVLVIRNGFEAN---VSVCNAVITMYSRCGGILDSELAFRQIH--SP-NLV---SW  373 (597)
Q Consensus       303 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~-~~~---~~  373 (597)
                      ....+......+...|+++.|...++.+.+... .+   ...+..+..+|.+.|++++|...++.+.  .| +..   ++
T Consensus        32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~  110 (235)
T TIGR03302        32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYP-FSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY  110 (235)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence            455667777788899999999999999987652 22   2466778899999999999999999886  22 222   45


Q ss_pred             HHHHHHHHHc--------CCHHHHHHHHHHHHHCCCCCChH-HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHH
Q 007573          374 NTIIAAFAQH--------GHYEKALIFFSQMGLNGFDPDGI-TFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHY  444 (597)
Q Consensus       374 ~~li~~~~~~--------g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~  444 (597)
                      ..+..++...        |++++|.+.|+++...  .|+.. ....+.... .   ..      ... .        ...
T Consensus       111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~-~---~~------~~~-~--------~~~  169 (235)
T TIGR03302       111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMD-Y---LR------NRL-A--------GKE  169 (235)
T ss_pred             HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHH-H---HH------HHH-H--------HHH
Confidence            5555666654        7889999999999875  45532 222111110 0   00      000 0        112


Q ss_pred             HHHHHHHhhcCCHHHHHHHHhhCC-C---CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 007573          445 TCLVDILSRAGQLEKAWQITQGMP-F---EA-DTGVWGSLLAACVINLNVELGELAAKKMRELDP  504 (597)
Q Consensus       445 ~~l~~~~~~~g~~~~A~~~~~~~~-~---~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p  504 (597)
                      ..+...|.+.|++++|...+++.. .   .| ....+..++.++...|++++|...++.+....|
T Consensus       170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~  234 (235)
T TIGR03302       170 LYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP  234 (235)
T ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            356677889999999999888765 2   23 246888999999999999999998888876655

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=98.42  E-value=4.3e-06  Score=69.50  Aligned_cols=97  Identities=21%  Similarity=0.220  Sum_probs=74.1

Q ss_pred             hHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 007573          441 SEHYTCLVDILSRAGQLEKAWQITQGMP-FEA-DTGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYA  518 (597)
Q Consensus       441 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~  518 (597)
                      ......++..+...|++++|.+.++.+. ..| +...|..+...+...|++++|...++++++.+|+++..+..++.+|.
T Consensus        17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~   96 (135)
T TIGR02552        17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLL   96 (135)
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence            3445566677777788888887777754 334 56677777778888888888888888888888888888888888888


Q ss_pred             hcCCcHHHHHHHHHHHhCC
Q 007573          519 AAGMWRDVTRVRLLMKEQG  537 (597)
Q Consensus       519 ~~g~~~~A~~~~~~~~~~~  537 (597)
                      ..|++++|.+.++...+..
T Consensus        97 ~~g~~~~A~~~~~~al~~~  115 (135)
T TIGR02552        97 ALGEPESALKALDLAIEIC  115 (135)
T ss_pred             HcCCHHHHHHHHHHHHHhc
Confidence            8888888888888776643

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PLN02789 farnesyltranstransferase

Probab=98.42  E-value=4.7e-05  Score=72.41  Aligned_cols=186  Identities=10%  Similarity=0.078  Sum_probs=135.9

Q ss_pred             HHhcCCHHHHHHHHhccC---CCChhhHHHHHHHHHHcC-CHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCc--HH
Q 007573          349 YSRCGGILDSELAFRQIH---SPNLVSWNTIIAAFAQHG-HYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGK--VN  422 (597)
Q Consensus       349 ~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~--~~  422 (597)
                      +...++.++|.....++.   +.+..+|+.-...+...| ++++++..++++.+.. +-+..+|+.-...+.+.|.  .+
T Consensus        47 l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~~~~~  125 (320)
T PLN02789         47 YASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGPDAAN  125 (320)
T ss_pred             HHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCchhhH
Confidence            334467777877777766   344557776666677777 5799999999998763 3334556655555555665  36


Q ss_pred             HHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhc---CC----HHHHH
Q 007573          423 ESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMP-FEA-DTGVWGSLLAACVIN---LN----VELGE  493 (597)
Q Consensus       423 ~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~---g~----~~~a~  493 (597)
                      ++..+++.+.+.  -+-+...|.....++.+.|++++|++.++++. ..| +..+|+.........   |.    .+.++
T Consensus       126 ~el~~~~kal~~--dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el  203 (320)
T PLN02789        126 KELEFTRKILSL--DAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSEL  203 (320)
T ss_pred             HHHHHHHHHHHh--CcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHH
Confidence            778888888753  23457888888999999999999999999886 333 567888877666554   22    35788


Q ss_pred             HHHHHHHhcCCCCCchHHHHHHHHHhc----CCcHHHHHHHHHHHhCC
Q 007573          494 LAAKKMRELDPQNSAVYVMLSNLYAAA----GMWRDVTRVRLLMKEQG  537 (597)
Q Consensus       494 ~~~~~~~~~~p~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~  537 (597)
                      .+..++++.+|++..++..+..++...    ++..+|.+...+..+.+
T Consensus       204 ~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~  251 (320)
T PLN02789        204 KYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD  251 (320)
T ss_pred             HHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc
Confidence            888999999999999999999999883    45567888877765543

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.41  E-value=0.00034  Score=61.88  Aligned_cols=70  Identities=11%  Similarity=0.042  Sum_probs=37.5

Q ss_pred             CHHHHHHHHhhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcHH
Q 007573          456 QLEKAWQITQGMP--FEADTGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRD  525 (597)
Q Consensus       456 ~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~  525 (597)
                      +..+|.-+|++|.  .+|+..+.+....++...|++++|..+++.++..++++|.++.+++-+-...|+-.+
T Consensus       188 k~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~  259 (299)
T KOG3081|consen  188 KIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAE  259 (299)
T ss_pred             hhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChH
Confidence            3444555555543  344555555555555555555555555555555555555555555555555555443

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.41  E-value=1.3e-05  Score=80.21  Aligned_cols=189  Identities=14%  Similarity=0.105  Sum_probs=159.6

Q ss_pred             CCCCcccHHHHHHHHHHhcCCHHHHHHHHhccCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHH
Q 007573          334 GFEANVSVCNAVITMYSRCGGILDSELAFRQIHSPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLS  413 (597)
Q Consensus       334 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~  413 (597)
                      +.+|--..-..+...+...|-...|..+|+++.     .|.-.|.+|+..|+..+|..+..+-.+  -+||+..|..+.+
T Consensus       393 ~lpp~Wq~q~~laell~slGitksAl~I~Erle-----mw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGD  465 (777)
T KOG1128|consen  393 HLPPIWQLQRLLAELLLSLGITKSALVIFERLE-----MWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGD  465 (777)
T ss_pred             CCCCcchHHHHHHHHHHHcchHHHHHHHHHhHH-----HHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhh
Confidence            445666667778899999999999999998764     677889999999999999999988887  3899999999999


Q ss_pred             HHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHH
Q 007573          414 ACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMP-FEA-DTGVWGSLLAACVINLNVEL  491 (597)
Q Consensus       414 ~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~  491 (597)
                      ......-+++|.++.+.....        .-..+.....+.++++++.+.++.-. ..| ...+|-.++.+..+.++++.
T Consensus       466 v~~d~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~  537 (777)
T KOG1128|consen  466 VLHDPSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQA  537 (777)
T ss_pred             hccChHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHH
Confidence            888888899999998765432        22223333456899999999998643 444 56799999999999999999


Q ss_pred             HHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHhCC
Q 007573          492 GELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRVRLLMKEQG  537 (597)
Q Consensus       492 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  537 (597)
                      |.+.|.....++|++...++++.-+|.+.|+..+|...+++..+.+
T Consensus       538 av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn  583 (777)
T KOG1128|consen  538 AVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN  583 (777)
T ss_pred             HHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC
Confidence            9999999999999999999999999999999999999999998866

>PF12854 PPR_1: PPR repeat

Probab=98.38  E-value=4.9e-07  Score=53.59  Aligned_cols=32  Identities=38%  Similarity=0.772  Sum_probs=23.2

Q ss_pred             CCCCChHHHHHHHHHHhccCcHHHHHHHHHHh
Q 007573          400 GFDPDGITFLSLLSACGHAGKVNESMDLFELM  431 (597)
Q Consensus       400 g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~  431 (597)
                      |+.||..||+.++.++++.|++++|.++|++|
T Consensus         2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M   33 (34)
T PF12854_consen    2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM   33 (34)
T ss_pred             CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence            56777777777777777777777777777765

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.30  E-value=0.00013  Score=76.75  Aligned_cols=137  Identities=9%  Similarity=-0.003  Sum_probs=93.1

Q ss_pred             CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hHHHH
Q 007573          368 PNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPD-GITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPS-SEHYT  445 (597)
Q Consensus       368 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~  445 (597)
                      .++..+-.|.....+.|++++|..+++...+.  .|| ......+...+.+.+++++|+...++...   ..|+ .....
T Consensus        84 ~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~---~~p~~~~~~~  158 (694)
T PRK15179         84 HTELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS---GGSSSAREIL  158 (694)
T ss_pred             ccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh---cCCCCHHHHH
Confidence            34566666777777777777777777777664  555 34556666777777777777777777664   2343 55666


Q ss_pred             HHHHHHhhcCCHHHHHHHHhhCC-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch
Q 007573          446 CLVDILSRAGQLEKAWQITQGMP-FEAD-TGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAV  509 (597)
Q Consensus       446 ~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~  509 (597)
                      .+..++...|++++|..+|+++. ..|+ ..++.++..++...|+.++|...|+++++...+-...
T Consensus       159 ~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~  224 (694)
T PRK15179        159 LEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARK  224 (694)
T ss_pred             HHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHH
Confidence            67777777777777777777765 3343 5677777777777777777777777777664433333

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.29  E-value=0.0002  Score=76.20  Aligned_cols=148  Identities=11%  Similarity=0.094  Sum_probs=75.5

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHhccC---CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhc
Q 007573          341 VCNAVITMYSRCGGILDSELAFRQIH---SPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGH  417 (597)
Q Consensus       341 ~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~  417 (597)
                      .+..+..+|-+.|+.++|..+++++.   +.|+.+.|.+...|... +.++|.+++.+....               +..
T Consensus       118 Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~---------------~i~  181 (906)
T PRK14720        118 ALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR---------------FIK  181 (906)
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH---------------HHh
Confidence            44445555555555555555555554   33445555555555555 556666555554432               333


Q ss_pred             cCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 007573          418 AGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMPFEADTGVWGSLLAACVINLNVELGELAAK  497 (597)
Q Consensus       418 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~  497 (597)
                      .+++..+.++|.++...  .+.+...+..+.......-.            ..--..++.-+-..|...+++++++.+++
T Consensus       182 ~kq~~~~~e~W~k~~~~--~~~d~d~f~~i~~ki~~~~~------------~~~~~~~~~~l~~~y~~~~~~~~~i~iLK  247 (906)
T PRK14720        182 KKQYVGIEEIWSKLVHY--NSDDFDFFLRIERKVLGHRE------------FTRLVGLLEDLYEPYKALEDWDEVIYILK  247 (906)
T ss_pred             hhcchHHHHHHHHHHhc--CcccchHHHHHHHHHHhhhc------------cchhHHHHHHHHHHHhhhhhhhHHHHHHH
Confidence            44555555555555531  11122222222211111100            11122344444555666677777777777


Q ss_pred             HHHhcCCCCCchHHHHHHHHH
Q 007573          498 KMRELDPQNSAVYVMLSNLYA  518 (597)
Q Consensus       498 ~~~~~~p~~~~~~~~l~~~~~  518 (597)
                      .+++.+|.|..+...++..|.
T Consensus       248 ~iL~~~~~n~~a~~~l~~~y~  268 (906)
T PRK14720        248 KILEHDNKNNKAREELIRFYK  268 (906)
T ss_pred             HHHhcCCcchhhHHHHHHHHH
Confidence            777777777666666666665

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=98.27  E-value=3e-05  Score=64.41  Aligned_cols=113  Identities=14%  Similarity=0.042  Sum_probs=87.4

Q ss_pred             HHHHHHHCCCCCC-hHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC-C
Q 007573          392 FFSQMGLNGFDPD-GITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMP-F  469 (597)
Q Consensus       392 ~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~  469 (597)
                      ++++....  .|+ ......+...+...|++++|.+.++.+...  .+.+...+..+...+.+.|++++|..++++.. .
T Consensus         5 ~~~~~l~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~   80 (135)
T TIGR02552         5 TLKDLLGL--DSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY--DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL   80 (135)
T ss_pred             hHHHHHcC--ChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            44555443  443 344566667788889999999999888763  23457788888899999999999999888764 3


Q ss_pred             CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 007573          470 EA-DTGVWGSLLAACVINLNVELGELAAKKMRELDPQNSA  508 (597)
Q Consensus       470 ~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~  508 (597)
                      .| +...+..+...+...|++++|...++++++.+|++..
T Consensus        81 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  120 (135)
T TIGR02552        81 DPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPE  120 (135)
T ss_pred             CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence            44 5677888888899999999999999999999998765

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.22  E-value=2.6e-05  Score=75.67  Aligned_cols=122  Identities=16%  Similarity=0.128  Sum_probs=94.1

Q ss_pred             HHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHh
Q 007573          408 FLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMP-FEA-DTGVWGSLLAACVI  485 (597)
Q Consensus       408 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~  485 (597)
                      ...++..+...++++.|.++++++.+.   .|+  ....++..+...++-.+|.+++++.. ..| +...+......|..
T Consensus       172 v~~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~  246 (395)
T PF09295_consen  172 VDTLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLS  246 (395)
T ss_pred             HHHHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence            344555666677778888888877654   243  44456777777777778887777655 333 55666666777889


Q ss_pred             cCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHH
Q 007573          486 NLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRVRLLMK  534 (597)
Q Consensus       486 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  534 (597)
                      .++++.|+.+.+++.+..|.+..+|..|+.+|...|++++|+-.+..+.
T Consensus       247 k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P  295 (395)
T PF09295_consen  247 KKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP  295 (395)
T ss_pred             cCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence            9999999999999999999999999999999999999999999888875

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=98.19  E-value=0.013  Score=61.05  Aligned_cols=401  Identities=12%  Similarity=0.114  Sum_probs=198.5

Q ss_pred             cCCChHHHHHHHccCC--CCChhhHHHHHH--HHHcCCChHHHHHHHccCCC---CCchhHHHHHHHHHhCCChhHHHHH
Q 007573          124 DNDRIDDAFDYFQAMP--ERNTATYNAMIS--GFLKHGRLEEATRLFEQMPR---RNVISYTAMLDGFMKKGEVDKARAL  196 (597)
Q Consensus       124 ~~~~~~~A~~~~~~~~--~~~~~~~~~l~~--~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~  196 (597)
                      ..+++..|.+....+.  -||. .|...+.  .+.|.|+.++|..+++....   .|..|...+-.+|...|+.++|..+
T Consensus        21 d~~qfkkal~~~~kllkk~Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~   99 (932)
T KOG2053|consen   21 DSSQFKKALAKLGKLLKKHPNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHL   99 (932)
T ss_pred             hhHHHHHHHHHHHHHHHHCCCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHH
Confidence            4556666666666655  2332 2222232  23477777777777766543   3566777777777777888888888


Q ss_pred             HHhccc--CCcchHHHHHHHHHcCCChHH----HHHHHhhcCCCCCCchHHHHHHHHHHhcCC----------HHHHHHH
Q 007573          197 SDYMSF--KNVVSWTVMITGYVKNERFCE----ARELFYRMPDYDKNVFVVTAMITGFCKVGM----------LENARLL  260 (597)
Q Consensus       197 ~~~m~~--~~~~~~~~ll~~~~~~g~~~~----a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~  260 (597)
                      |++...  |+..-...+..+|.+.+.+.+    |.+++...   +.+...+-+++..+.+.-.          +.-|.+.
T Consensus       100 Ye~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~---pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m  176 (932)
T KOG2053|consen  100 YERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYKNF---PKRAYYFWSVISLILQSIFSENELLDPILLALAEKM  176 (932)
T ss_pred             HHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---CcccchHHHHHHHHHHhccCCcccccchhHHHHHHH
Confidence            877744  444444555566666666554    33344322   2234444444444433211          2234444


Q ss_pred             HhhcCCCC-h----hHHHHHHHHHHHcCChhHHHHHHHH-hHHCCCCCCHHHHHHHHHHHhccchhHHHHHHHHHHHHhC
Q 007573          261 FERIQPKD-C----VSFNAMIAGYAQNGVAEEALRLFSG-MIKMDMQPDDATLVSVFTACSALQLLNEGRQSHVLVIRNG  334 (597)
Q Consensus       261 ~~~~~~~~-~----~~~~~li~~~~~~g~~~~A~~~~~~-m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~  334 (597)
                      ++.+.+.+ .    .-...-...+...|++++|+.++.. ....-...+...-+.-+..+...+++.+..++-..+...|
T Consensus       177 ~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~  256 (932)
T KOG2053|consen  177 VQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKG  256 (932)
T ss_pred             HHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhC
Confidence            44444332 1    1111222334456777777777733 2222222333444455556666777777777777777666


Q ss_pred             CCCcccHHHHHHHHHHh----------------cCCHHHHHHHHhccCCC-ChhhHHHHHHHH---HHcCCHHHHHHHHH
Q 007573          335 FEANVSVCNAVITMYSR----------------CGGILDSELAFRQIHSP-NLVSWNTIIAAF---AQHGHYEKALIFFS  394 (597)
Q Consensus       335 ~~~~~~~~~~l~~~~~~----------------~g~~~~A~~~~~~~~~~-~~~~~~~li~~~---~~~g~~~~A~~~~~  394 (597)
                      ...    |...++.+.+                .+..+...+..++.... ....|-+-+..+   ..-|+.+++.-.|-
T Consensus       257 ~Dd----y~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~~Rgp~LA~lel~kr~~~~gd~ee~~~~y~  332 (932)
T KOG2053|consen  257 NDD----YKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSKSRGPYLARLELDKRYKLIGDSEEMLSYYF  332 (932)
T ss_pred             Ccc----hHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhcccccCcHHHHHHHHHHhcccCChHHHHHHHH
Confidence            321    3333332221                11222222222222111 111222222222   23466666554442


Q ss_pred             HHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChH-------HHHHHHHHHhhcCC-----HHHHHH
Q 007573          395 QMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSE-------HYTCLVDILSRAGQ-----LEKAWQ  462 (597)
Q Consensus       395 ~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~-------~~~~l~~~~~~~g~-----~~~A~~  462 (597)
                      +-  -|-.|-   +..=+..|...=..+.-..++....   +..++..       -+.+.+....-.|.     -+.-..
T Consensus       333 ~k--fg~kpc---c~~Dl~~yl~~l~~~q~~~l~~~l~---~~~~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad~i~a  404 (932)
T KOG2053|consen  333 KK--FGDKPC---CAIDLNHYLGHLNIDQLKSLMSKLV---LADDDSSGDEKVLQQHLCVLLLLRLLGLYEKLPADSILA  404 (932)
T ss_pred             HH--hCCCcH---hHhhHHHhhccCCHHHHHHHHHHhh---ccCCcchhhHHHHHHHHHHHHHHHHhhccccCChHHHHH
Confidence            22  222221   1111111211112222222322222   1111111       01111111122221     111122


Q ss_pred             HHhhC--------C----CCCC---------HHHHHHHHHHHHhcCCH---HHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 007573          463 ITQGM--------P----FEAD---------TGVWGSLLAACVINLNV---ELGELAAKKMRELDPQNSAVYVMLSNLYA  518 (597)
Q Consensus       463 ~~~~~--------~----~~p~---------~~~~~~l~~~~~~~g~~---~~a~~~~~~~~~~~p~~~~~~~~l~~~~~  518 (597)
                      ++.+.        .    .-|.         ..+.+.|+..|.+.++.   -+|+-+++..+..+|.|..+-..++.+|.
T Consensus       405 ~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~s~hnf~~KLlLiriY~  484 (932)
T KOG2053|consen  405 YVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTKSPHNFQTKLLLIRIYS  484 (932)
T ss_pred             HHHHHHHHHhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHH
Confidence            22111        0    0111         12456777888888774   57888899999999999999999999999


Q ss_pred             hcCCcHHHHHHHHHHHhCCCcc
Q 007573          519 AAGMWRDVTRVRLLMKEQGVTK  540 (597)
Q Consensus       519 ~~g~~~~A~~~~~~~~~~~~~~  540 (597)
                      -.|-+..|.+.|+.+.-+.+..
T Consensus       485 ~lGa~p~a~~~y~tLdIK~IQ~  506 (932)
T KOG2053|consen  485 YLGAFPDAYELYKTLDIKNIQT  506 (932)
T ss_pred             HhcCChhHHHHHHhcchHHhhh
Confidence            9999999999999987666644

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.18  E-value=6.1e-05  Score=63.23  Aligned_cols=114  Identities=13%  Similarity=0.074  Sum_probs=66.1

Q ss_pred             cCcHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCCCH----HHHHHHHHHHHhcCCHHH
Q 007573          418 AGKVNESMDLFELMVKVYGIIP-SSEHYTCLVDILSRAGQLEKAWQITQGMP-FEADT----GVWGSLLAACVINLNVEL  491 (597)
Q Consensus       418 ~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~----~~~~~l~~~~~~~g~~~~  491 (597)
                      .++...+...++.+.+.++-.| .....-.+...+...|++++|...|+.+. ..|+.    .....|...+...|++++
T Consensus        24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~  103 (145)
T PF09976_consen   24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE  103 (145)
T ss_pred             CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence            5566666666666665422211 12233334566666677777777766654 22332    234445566677777777


Q ss_pred             HHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcHHHHHHHHH
Q 007573          492 GELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRVRLL  532 (597)
Q Consensus       492 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~  532 (597)
                      |+..++.. ...+..+..+...+++|.+.|++++|+..|+.
T Consensus       104 Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~  143 (145)
T PF09976_consen  104 ALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQK  143 (145)
T ss_pred             HHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            77777552 22222355666777777777777777777765

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.17  E-value=0.00029  Score=61.76  Aligned_cols=163  Identities=13%  Similarity=0.121  Sum_probs=128.8

Q ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHH-HHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHH
Q 007573          372 SWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSL-LSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDI  450 (597)
Q Consensus       372 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l-l~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~  450 (597)
                      .|..++-+....|+.+.|...++++...-  |...-...+ ..-+...|.+++|.++++.+..+  -+-|..++-.=+-+
T Consensus        54 l~EqV~IAAld~~~~~lAq~C~~~L~~~f--p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~d--dpt~~v~~KRKlAi  129 (289)
T KOG3060|consen   54 LYEQVFIAALDTGRDDLAQKCINQLRDRF--PGSKRVGKLKAMLLEATGNYKEAIEYYESLLED--DPTDTVIRKRKLAI  129 (289)
T ss_pred             HHHHHHHHHHHhcchHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHhhchhhHHHHHHHHhcc--CcchhHHHHHHHHH
Confidence            45555666777899999999999998752  544332222 23345679999999999999875  24456677766777


Q ss_pred             HhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCC---cHH
Q 007573          451 LSRAGQLEKAWQITQGMP--FEADTGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGM---WRD  525 (597)
Q Consensus       451 ~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~---~~~  525 (597)
                      .-..|+.-+|++-+.+..  +..|...|.-|...|...|++++|.-.+++++=.+|.++..+..+++++.-.|-   .+-
T Consensus       130 lka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~  209 (289)
T KOG3060|consen  130 LKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLEL  209 (289)
T ss_pred             HHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHH
Confidence            778888888888777655  667999999999999999999999999999999999999999999999888774   556


Q ss_pred             HHHHHHHHHhCCC
Q 007573          526 VTRVRLLMKEQGV  538 (597)
Q Consensus       526 A~~~~~~~~~~~~  538 (597)
                      |.++|.+..+...
T Consensus       210 arkyy~~alkl~~  222 (289)
T KOG3060|consen  210 ARKYYERALKLNP  222 (289)
T ss_pred             HHHHHHHHHHhCh
Confidence            8888888877554

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.12  E-value=0.00089  Score=71.41  Aligned_cols=146  Identities=13%  Similarity=0.141  Sum_probs=79.0

Q ss_pred             hHHHHHHHHHcCCChHHHHHHHhhcCCCCC-CchHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCCh
Q 007573          207 SWTVMITGYVKNERFCEARELFYRMPDYDK-NVFVVTAMITGFCKVGMLENARLLFERIQPKDCVSFNAMIAGYAQNGVA  285 (597)
Q Consensus       207 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~  285 (597)
                      .+..++.+|-+.|+.+++..+++++.+.+| +..+.|.++..|... ++++|...+.+...           .|...+++
T Consensus       118 Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~-----------~~i~~kq~  185 (906)
T PRK14720        118 ALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIY-----------RFIKKKQY  185 (906)
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHH-----------HHHhhhcc
Confidence            455566666666666666666666666555 344556666666666 66666665554322           25555566


Q ss_pred             hHHHHHHHHhHHCCCCCCHHHHHHHHHHHhccchhHHHHHHHHHHHHh-CCCCcccHHHHHHHHHHhcCCHHHHHHHHhc
Q 007573          286 EEALRLFSGMIKMDMQPDDATLVSVFTACSALQLLNEGRQSHVLVIRN-GFEANVSVCNAVITMYSRCGGILDSELAFRQ  364 (597)
Q Consensus       286 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  364 (597)
                      ..+.+++.++...  .|+..               +.-.++.+.+... |..--..++-.+-..|....+++++..+++.
T Consensus       186 ~~~~e~W~k~~~~--~~~d~---------------d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~  248 (906)
T PRK14720        186 VGIEEIWSKLVHY--NSDDF---------------DFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKK  248 (906)
T ss_pred             hHHHHHHHHHHhc--Ccccc---------------hHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHH
Confidence            6666666666553  22222               2222222233222 2223344455556666667777777777776


Q ss_pred             cC---CCChhhHHHHHHHHH
Q 007573          365 IH---SPNLVSWNTIIAAFA  381 (597)
Q Consensus       365 ~~---~~~~~~~~~li~~~~  381 (597)
                      +.   +.|.....-++..|.
T Consensus       249 iL~~~~~n~~a~~~l~~~y~  268 (906)
T PRK14720        249 ILEHDNKNNKAREELIRFYK  268 (906)
T ss_pred             HHhcCCcchhhHHHHHHHHH
Confidence            65   334445555555554

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.12  E-value=0.00062  Score=65.62  Aligned_cols=133  Identities=11%  Similarity=0.072  Sum_probs=66.0

Q ss_pred             hcCCHHHHHHHHhccC---CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHhccCcHHHHHH
Q 007573          351 RCGGILDSELAFRQIH---SPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPD-GITFLSLLSACGHAGKVNESMD  426 (597)
Q Consensus       351 ~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~  426 (597)
                      ..|+.++|+..++.+.   +.|+..+......+...|+.++|.+.++++...  .|+ ......+..++.+.|++.+|..
T Consensus       318 ~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~eai~  395 (484)
T COG4783         318 LAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEAIR  395 (484)
T ss_pred             HhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHHHH
Confidence            3455555555555443   333444444445555555555555555555543  344 3333444455555555555555


Q ss_pred             HHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 007573          427 LFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMPFEADTGVWGSLLAACVINLNVELGELAAKKMREL  502 (597)
Q Consensus       427 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  502 (597)
                      +++....  ..+-|+..|..|..+|...|+..+|..-.               ...+.-.|+++.|+..+..+.+.
T Consensus       396 ~L~~~~~--~~p~dp~~w~~LAqay~~~g~~~~a~~A~---------------AE~~~~~G~~~~A~~~l~~A~~~  454 (484)
T COG4783         396 ILNRYLF--NDPEDPNGWDLLAQAYAELGNRAEALLAR---------------AEGYALAGRLEQAIIFLMRASQQ  454 (484)
T ss_pred             HHHHHhh--cCCCCchHHHHHHHHHHHhCchHHHHHHH---------------HHHHHhCCCHHHHHHHHHHHHHh
Confidence            5555543  33344555555555555555555443322               22334445555555555555544

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.09  E-value=3.6e-05  Score=59.11  Aligned_cols=93  Identities=19%  Similarity=0.182  Sum_probs=75.5

Q ss_pred             HHHHHHHHhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcC
Q 007573          444 YTCLVDILSRAGQLEKAWQITQGMP-FEA-DTGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAG  521 (597)
Q Consensus       444 ~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g  521 (597)
                      +..++..+...|++++|.+.+++.. ..| +...+..+...+...|++++|...++++.+..|.++..+..++.++...|
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (100)
T cd00189           3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG   82 (100)
T ss_pred             HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence            4556677778888888888887764 334 34667777888888899999999999999999988888889999999999


Q ss_pred             CcHHHHHHHHHHHhC
Q 007573          522 MWRDVTRVRLLMKEQ  536 (597)
Q Consensus       522 ~~~~A~~~~~~~~~~  536 (597)
                      ++++|.+.++...+.
T Consensus        83 ~~~~a~~~~~~~~~~   97 (100)
T cd00189          83 KYEEALEAYEKALEL   97 (100)
T ss_pred             hHHHHHHHHHHHHcc
Confidence            999999998887653

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.09  E-value=0.0013  Score=58.21  Aligned_cols=247  Identities=12%  Similarity=0.032  Sum_probs=151.0

Q ss_pred             cCCHHHHHHHHhhcCC--CChhHHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhccchhHH-HHHHH
Q 007573          251 VGMLENARLLFERIQP--KDCVSFNAMIAGYAQNGVAEEALRLFSGMIKMDMQPDDATLVSVFTACSALQLLNE-GRQSH  327 (597)
Q Consensus       251 ~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~-a~~~~  327 (597)
                      .|.+..++..-.....  .++..-.-+-++|...|.+...+.-.   .. |-.|....+..+-......++.+. ...+.
T Consensus        21 ~Gnyq~~ine~~~~~~~~~~~e~d~y~~raylAlg~~~~~~~eI---~~-~~~~~lqAvr~~a~~~~~e~~~~~~~~~l~   96 (299)
T KOG3081|consen   21 LGNYQQCINEAEKFSSSKTDVELDVYMYRAYLALGQYQIVISEI---KE-GKATPLQAVRLLAEYLELESNKKSILASLY   96 (299)
T ss_pred             hhHHHHHHHHHHhhccccchhHHHHHHHHHHHHccccccccccc---cc-ccCChHHHHHHHHHHhhCcchhHHHHHHHH
Confidence            4555555544433222  23334444555666666554433221   11 113333334333333333443332 22334


Q ss_pred             HHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHhccCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHH
Q 007573          328 VLVIRNGFEANVSVCNAVITMYSRCGGILDSELAFRQIHSPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGIT  407 (597)
Q Consensus       328 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~  407 (597)
                      +.+.......+......-...|...|++++|.+.......  ......=+..+.+..+.+-|.+.+++|.+   --+..|
T Consensus        97 E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~--lE~~Al~VqI~lk~~r~d~A~~~lk~mq~---ided~t  171 (299)
T KOG3081|consen   97 ELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGEN--LEAAALNVQILLKMHRFDLAEKELKKMQQ---IDEDAT  171 (299)
T ss_pred             HHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccch--HHHHHHHHHHHHHHHHHHHHHHHHHHHHc---cchHHH
Confidence            4444444444444444445667888888888888877443  33333334456677888999999999985   345667


Q ss_pred             HHHHHHHHh----ccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHH
Q 007573          408 FLSLLSACG----HAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMP--FEADTGVWGSLLA  481 (597)
Q Consensus       408 ~~~ll~~~~----~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~  481 (597)
                      .+.|..++.    ..+.+.+|.-+|+++..  ..+|++.+.+....+....|++++|..++++..  ...++.++..++.
T Consensus       172 LtQLA~awv~la~ggek~qdAfyifeE~s~--k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv  249 (299)
T KOG3081|consen  172 LTQLAQAWVKLATGGEKIQDAFYIFEELSE--KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIV  249 (299)
T ss_pred             HHHHHHHHHHHhccchhhhhHHHHHHHHhc--ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHH
Confidence            776666554    34578899999999975  567888888888888889999999999998876  3345667777776


Q ss_pred             HHHhcCC-HHHHHHHHHHHHhcCCCCCc
Q 007573          482 ACVINLN-VELGELAAKKMRELDPQNSA  508 (597)
Q Consensus       482 ~~~~~g~-~~~a~~~~~~~~~~~p~~~~  508 (597)
                      .-...|. .+-..+.+.+.....|..+.
T Consensus       250 ~a~~~Gkd~~~~~r~l~QLk~~~p~h~~  277 (299)
T KOG3081|consen  250 LALHLGKDAEVTERNLSQLKLSHPEHPF  277 (299)
T ss_pred             HHHHhCCChHHHHHHHHHHHhcCCcchH
Confidence            6555554 45566778888888887653

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=98.08  E-value=1.1e-05  Score=57.81  Aligned_cols=65  Identities=20%  Similarity=0.165  Sum_probs=59.6

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcC-CcHHHHHHHHHHHhC
Q 007573          472 DTGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAG-MWRDVTRVRLLMKEQ  536 (597)
Q Consensus       472 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~  536 (597)
                      ++.+|..++..+...|++++|+..|+++++.+|+++.++..++.+|...| ++++|++.+++..+.
T Consensus         2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l   67 (69)
T PF13414_consen    2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL   67 (69)
T ss_dssp             SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence            46788899999999999999999999999999999999999999999999 799999999988764

...

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.08  E-value=0.00025  Score=59.53  Aligned_cols=125  Identities=20%  Similarity=0.138  Sum_probs=85.5

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC---hHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC--hHHHHHH
Q 007573          373 WNTIIAAFAQHGHYEKALIFFSQMGLNGFDPD---GITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPS--SEHYTCL  447 (597)
Q Consensus       373 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~l  447 (597)
                      |..++..+ ..++...+...++.+.... +.+   ......+...+...|++++|...|+.+... ...|+  ......|
T Consensus        15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l~L   91 (145)
T PF09976_consen   15 YEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARLRL   91 (145)
T ss_pred             HHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHHHH
Confidence            44444444 4778888888888887753 222   223344556777888888888888888775 32222  2344457


Q ss_pred             HHHHhhcCCHHHHHHHHhhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007573          448 VDILSRAGQLEKAWQITQGMPFE-ADTGVWGSLLAACVINLNVELGELAAKKMR  500 (597)
Q Consensus       448 ~~~~~~~g~~~~A~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  500 (597)
                      ...+...|++++|+..++..... .....+...+..+...|+.++|+..|++++
T Consensus        92 A~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al  145 (145)
T PF09976_consen   92 ARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL  145 (145)
T ss_pred             HHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence            78888889999999988776522 234566677788889999999999888763

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.05  E-value=6.6e-05  Score=60.64  Aligned_cols=94  Identities=13%  Similarity=-0.035  Sum_probs=57.4

Q ss_pred             HHHHHHHHhhcCCHHHHHHHHhhCC-CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---CchHHHHHH
Q 007573          444 YTCLVDILSRAGQLEKAWQITQGMP-FEAD----TGVWGSLLAACVINLNVELGELAAKKMRELDPQN---SAVYVMLSN  515 (597)
Q Consensus       444 ~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~  515 (597)
                      +..++..+.+.|++++|.+.++++. ..|+    ...+..++.++...|++++|...++++++..|++   +.++..++.
T Consensus         5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~   84 (119)
T TIGR02795         5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM   84 (119)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence            3445555556666666666665553 2222    2344556666667777777777777777666654   345666677


Q ss_pred             HHHhcCCcHHHHHHHHHHHhCC
Q 007573          516 LYAAAGMWRDVTRVRLLMKEQG  537 (597)
Q Consensus       516 ~~~~~g~~~~A~~~~~~~~~~~  537 (597)
                      ++...|++++|.+.++++.+..
T Consensus        85 ~~~~~~~~~~A~~~~~~~~~~~  106 (119)
T TIGR02795        85 SLQELGDKEKAKATLQQVIKRY  106 (119)
T ss_pred             HHHHhCChHHHHHHHHHHHHHC
Confidence            7777777777777777666543

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=98.05  E-value=0.013  Score=56.15  Aligned_cols=408  Identities=12%  Similarity=0.117  Sum_probs=209.3

Q ss_pred             HHhcCChHHHHHHHhhcCC---CCcc------hHHHHHHHHHhCCChhHHHHHHhhCCCC-CcchHHHHHHHH--HcCCC
Q 007573           60 LSRAGKISAARQLFDQMTT---KDVI------TWNAIITGYWQNGFLQESKNLFQSMPVK-NIVSWNCMIAGC--IDNDR  127 (597)
Q Consensus        60 ~~~~g~~~~A~~~~~~~~~---~~~~------~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~ll~~~--~~~~~  127 (597)
                      +-+.+++.+|.++|.++-+   .++.      .-+.+|++|..+ +.+.....+....+. ....|..+..++  .+.+.
T Consensus        16 Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~-nld~Me~~l~~l~~~~~~s~~l~LF~~L~~Y~~k~   94 (549)
T PF07079_consen   16 LQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLN-NLDLMEKQLMELRQQFGKSAYLPLFKALVAYKQKE   94 (549)
T ss_pred             HHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHh-hHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhh
Confidence            4578999999999998865   2222      245677887655 334333333333322 245566666554  47788


Q ss_pred             hHHHHHHHccCCC------------------CChhhHHHHHHHHHcCCChHHHHHHHccCCC--------CCchhHHHHH
Q 007573          128 IDDAFDYFQAMPE------------------RNTATYNAMISGFLKHGRLEEATRLFEQMPR--------RNVISYTAML  181 (597)
Q Consensus       128 ~~~A~~~~~~~~~------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~li  181 (597)
                      +..|.+.+.....                  +|...-+..++.+...|++.+++.++++|..        -+..+|+.++
T Consensus        95 ~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~v  174 (549)
T PF07079_consen   95 YRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAV  174 (549)
T ss_pred             HHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHH
Confidence            8888887765541                  1223335567788889999999999988763        3677777754


Q ss_pred             HHHHhC--------CChhHHHHHH-------HhcccCCc----------chHHHHHHHHHcC--CChHHHHHHHhhcCC-
Q 007573          182 DGFMKK--------GEVDKARALS-------DYMSFKNV----------VSWTVMITGYVKN--ERFCEARELFYRMPD-  233 (597)
Q Consensus       182 ~~~~~~--------g~~~~A~~~~-------~~m~~~~~----------~~~~~ll~~~~~~--g~~~~a~~~~~~~~~-  233 (597)
                      -.+.+.        ...+-+.+.|       ++|...|.          .....++.-..-.  .+..--.+++..... 
T Consensus       175 lmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~~  254 (549)
T PF07079_consen  175 LMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWENF  254 (549)
T ss_pred             HHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHhh
Confidence            444331        1222222222       22211122          1222222222111  111112222222222 


Q ss_pred             -CCCCch-HHHHHHHHHHhcCCHHHHHHHHhhcCC--------CChhHHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCC
Q 007573          234 -YDKNVF-VVTAMITGFCKVGMLENARLLFERIQP--------KDCVSFNAMIAGYAQNGVAEEALRLFSGMIKMDMQPD  303 (597)
Q Consensus       234 -~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~  303 (597)
                       ..|+.. +...+..-+.+  +.+++..+.+.+..        .=+.++..++....+.++..+|.+.+.-+.-  +.|+
T Consensus       255 yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~--ldp~  330 (549)
T PF07079_consen  255 YVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKI--LDPR  330 (549)
T ss_pred             ccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh--cCCc
Confidence             334322 23344444433  44444444443322        2345788888888888888888887766554  2343


Q ss_pred             HHHHHH-------HHHHHh-ccch---hHHHHHHHHHHHHhCCCCcccHHHHHH---HHHHhcCC-HHHHHHHHhccC--
Q 007573          304 DATLVS-------VFTACS-ALQL---LNEGRQSHVLVIRNGFEANVSVCNAVI---TMYSRCGG-ILDSELAFRQIH--  366 (597)
Q Consensus       304 ~~~~~~-------ll~~~~-~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~g~-~~~A~~~~~~~~--  366 (597)
                      ...-.-       +.+..+ .-.+   +..-..++..+...++.. .....-|+   .-+.+.|. -++|.++++.+.  
T Consensus       331 ~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDr-qQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~f  409 (549)
T PF07079_consen  331 ISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDR-QQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQF  409 (549)
T ss_pred             chhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccH-HHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Confidence            321111       111111 1111   112222333333333211 11111222   22344454 677777777665  


Q ss_pred             -CCChhhHHHHH----HHHHH---cCCHHHHHHHHHHHHHCCCCCChH----HHHHHHH--HHhccCcHHHHHHHHHHhH
Q 007573          367 -SPNLVSWNTII----AAFAQ---HGHYEKALIFFSQMGLNGFDPDGI----TFLSLLS--ACGHAGKVNESMDLFELMV  432 (597)
Q Consensus       367 -~~~~~~~~~li----~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~----~~~~ll~--~~~~~g~~~~a~~~~~~~~  432 (597)
                       +-|...-|.+.    ..|.+   .....+-+.+-+-..+.|++|-.+    .-+.+..  -+...|++.++.-.-..+.
T Consensus       410 t~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~  489 (549)
T PF07079_consen  410 TNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLT  489 (549)
T ss_pred             ccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence             34444333322    12221   223344444444455667766432    2233332  2345677777766555444


Q ss_pred             HhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCCCCCCHHHHHH
Q 007573          433 KVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMPFEADTGVWGS  478 (597)
Q Consensus       433 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~  478 (597)
                         .+.|++.+|..+.-.+....++++|..++..++  |+..++++
T Consensus       490 ---~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP--~n~~~~ds  530 (549)
T PF07079_consen  490 ---KIAPSPQAYRLLGLCLMENKRYQEAWEYLQKLP--PNERMRDS  530 (549)
T ss_pred             ---HhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCC--CchhhHHH
Confidence               567888888888888888888888888888876  56666554

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.05  E-value=4.1e-05  Score=68.92  Aligned_cols=90  Identities=22%  Similarity=0.229  Sum_probs=42.9

Q ss_pred             HhccCcHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCCC-HHHHHHHHHHHHhcCCHHH
Q 007573          415 CGHAGKVNESMDLFELMVKVYGIIP-SSEHYTCLVDILSRAGQLEKAWQITQGMP-FEAD-TGVWGSLLAACVINLNVEL  491 (597)
Q Consensus       415 ~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~g~~~~  491 (597)
                      +.+.+++.+|+..|.++++   +.| |...|..=..+|.+.|.++.|.+-.+... +.|. ..+|..|..+|...|++++
T Consensus        91 ~m~~~~Y~eAv~kY~~AI~---l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~  167 (304)
T KOG0553|consen   91 LMKNKDYQEAVDKYTEAIE---LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEE  167 (304)
T ss_pred             HHHhhhHHHHHHHHHHHHh---cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHH
Confidence            3444555555555555542   223 23344444445555555555554444433 3333 2245555555555555555


Q ss_pred             HHHHHHHHHhcCCCCC
Q 007573          492 GELAAKKMRELDPQNS  507 (597)
Q Consensus       492 a~~~~~~~~~~~p~~~  507 (597)
                      |++.|+++++++|++.
T Consensus       168 A~~aykKaLeldP~Ne  183 (304)
T KOG0553|consen  168 AIEAYKKALELDPDNE  183 (304)
T ss_pred             HHHHHHhhhccCCCcH
Confidence            5555555555555544

>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif)

Probab=98.05  E-value=9.3e-06  Score=48.92  Aligned_cols=35  Identities=37%  Similarity=0.644  Sum_probs=30.8

Q ss_pred             hhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCh
Q 007573          371 VSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDG  405 (597)
Q Consensus       371 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~  405 (597)
                      .+||++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus         1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~   35 (35)
T TIGR00756         1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV   35 (35)
T ss_pred             CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence            36899999999999999999999999999988873

This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.03  E-value=0.0002  Score=69.57  Aligned_cols=123  Identities=11%  Similarity=0.075  Sum_probs=93.6

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHhccCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcH
Q 007573          342 CNAVITMYSRCGGILDSELAFRQIHSPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKV  421 (597)
Q Consensus       342 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~  421 (597)
                      ...|+..+...++++.|+.+|+++...++.....++..+...++..+|++++++..+.. +-+......-...|.+.++.
T Consensus       172 v~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~~~  250 (395)
T PF09295_consen  172 VDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKKKY  250 (395)
T ss_pred             HHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCH
Confidence            34455556667888888888888886666667777888888888888888888888642 33455555556677888888


Q ss_pred             HHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC
Q 007573          422 NESMDLFELMVKVYGIIPS-SEHYTCLVDILSRAGQLEKAWQITQGMP  468 (597)
Q Consensus       422 ~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~  468 (597)
                      +.|.++.+++.+   ..|+ ..+|..|+.+|...|++++|+..++.++
T Consensus       251 ~lAL~iAk~av~---lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P  295 (395)
T PF09295_consen  251 ELALEIAKKAVE---LSPSEFETWYQLAECYIQLGDFENALLALNSCP  295 (395)
T ss_pred             HHHHHHHHHHHH---hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence            888888888874   3555 6688888888888888888888888887

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=98.01  E-value=0.00011  Score=71.82  Aligned_cols=98  Identities=13%  Similarity=0.104  Sum_probs=48.5

Q ss_pred             HHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHH
Q 007573          414 ACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMP-FEA-DTGVWGSLLAACVINLNVEL  491 (597)
Q Consensus       414 ~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~  491 (597)
                      .+...|++++|.+.|+++++.  -+-+...|..+..+|.+.|++++|+..++++. ..| +...|..++.+|...|++++
T Consensus        11 ~a~~~~~~~~Ai~~~~~Al~~--~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~e   88 (356)
T PLN03088         11 EAFVDDDFALAVDLYTQAIDL--DPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQT   88 (356)
T ss_pred             HHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHH
Confidence            334455555555555555532  11224444555555555555555555555443 233 33345555555555555555


Q ss_pred             HHHHHHHHHhcCCCCCchHHHH
Q 007573          492 GELAAKKMRELDPQNSAVYVML  513 (597)
Q Consensus       492 a~~~~~~~~~~~p~~~~~~~~l  513 (597)
                      |+..++++++++|+++.....+
T Consensus        89 A~~~~~~al~l~P~~~~~~~~l  110 (356)
T PLN03088         89 AKAALEKGASLAPGDSRFTKLI  110 (356)
T ss_pred             HHHHHHHHHHhCCCCHHHHHHH
Confidence            5555555555555554443333

>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif)

Probab=98.01  E-value=1e-05  Score=48.68  Aligned_cols=34  Identities=41%  Similarity=0.798  Sum_probs=31.6

Q ss_pred             hHHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCC
Q 007573          270 VSFNAMIAGYAQNGVAEEALRLFSGMIKMDMQPD  303 (597)
Q Consensus       270 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~  303 (597)
                      .+||.+|.+|++.|++++|.++|++|.+.|+.||
T Consensus         1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~   34 (35)
T TIGR00756         1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPD   34 (35)
T ss_pred             CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence            3799999999999999999999999999999987

This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.

>PRK15331 chaperone protein SicA; Provisional

Probab=98.01  E-value=0.00018  Score=59.38  Aligned_cols=100  Identities=11%  Similarity=-0.046  Sum_probs=82.9

Q ss_pred             CCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHH
Q 007573          436 GIIPS-SEHYTCLVDILSRAGQLEKAWQITQGMP--FEADTGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVM  512 (597)
Q Consensus       436 ~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~  512 (597)
                      |+.++ ....-....-+...|++++|..+|+-+.  ..-+..-|..|..+|...+++++|+..|..+..++++||..+..
T Consensus        31 gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~  110 (165)
T PRK15331         31 GIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFF  110 (165)
T ss_pred             CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccch
Confidence            44443 2223344555668999999999998765  33467788999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCcHHHHHHHHHHHh
Q 007573          513 LSNLYAAAGMWRDVTRVRLLMKE  535 (597)
Q Consensus       513 l~~~~~~~g~~~~A~~~~~~~~~  535 (597)
                      .+.+|...|+.++|+..|+...+
T Consensus       111 agqC~l~l~~~~~A~~~f~~a~~  133 (165)
T PRK15331        111 TGQCQLLMRKAAKARQCFELVNE  133 (165)
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHh
Confidence            99999999999999999998765

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=97.97  E-value=0.019  Score=54.98  Aligned_cols=80  Identities=16%  Similarity=0.267  Sum_probs=67.5

Q ss_pred             CCCcchHHHHHHHHHhcCChHHHHHHHhhcCCCCcc---hHHHHHHHHHhCCChhHHHHHHhhCCCC--CcchHHHHHHH
Q 007573           47 TQYVFVNNAKISALSRAGKISAARQLFDQMTTKDVI---TWNAIITGYWQNGFLQESKNLFQSMPVK--NIVSWNCMIAG  121 (597)
Q Consensus        47 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~ll~~  121 (597)
                      +.|+.+|-.||+-|...|..++-++++++|..|-++   +|..-+++-....+++....+|.+....  +...|...+.-
T Consensus        39 PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~ldLW~lYl~Y  118 (660)
T COG5107          39 PTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLNLDLWMLYLEY  118 (660)
T ss_pred             chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhccHhHHHHHHHH
Confidence            788999999999999999999999999999997654   7888888877888999999999998754  77777777765


Q ss_pred             HHcCC
Q 007573          122 CIDND  126 (597)
Q Consensus       122 ~~~~~  126 (597)
                      -.+-+
T Consensus       119 IRr~n  123 (660)
T COG5107         119 IRRVN  123 (660)
T ss_pred             HHhhC
Confidence            54443

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=97.97  E-value=6e-06  Score=61.80  Aligned_cols=78  Identities=15%  Similarity=0.181  Sum_probs=50.2

Q ss_pred             cCCHHHHHHHHhhCC-CCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcHHHHHH
Q 007573          454 AGQLEKAWQITQGMP-FEA---DTGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRV  529 (597)
Q Consensus       454 ~g~~~~A~~~~~~~~-~~p---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~  529 (597)
                      .|++++|+.+++++. ..|   +...+..+..++.+.|++++|..++++ .+.+|.++.....++.++.+.|++++|++.
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~   80 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA   80 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence            355666666665554 222   334455567777777777777777777 666666656666667778888888888777


Q ss_pred             HHH
Q 007573          530 RLL  532 (597)
Q Consensus       530 ~~~  532 (597)
                      +++
T Consensus        81 l~~   83 (84)
T PF12895_consen   81 LEK   83 (84)
T ss_dssp             HHH
T ss_pred             Hhc
Confidence            765

>PF13812 PPR_3: Pentatricopeptide repeat domain

Probab=97.96  E-value=1.5e-05  Score=47.59  Aligned_cols=33  Identities=30%  Similarity=0.585  Sum_probs=29.9

Q ss_pred             hHHHHHHHHHHHcCChhHHHHHHHHhHHCCCCC
Q 007573          270 VSFNAMIAGYAQNGVAEEALRLFSGMIKMDMQP  302 (597)
Q Consensus       270 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p  302 (597)
                      .+|+.++.+|.+.|+++.|.++|++|.+.|++|
T Consensus         2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P   34 (34)
T PF13812_consen    2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP   34 (34)
T ss_pred             cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            579999999999999999999999999998887

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=97.95  E-value=2.3e-05  Score=55.23  Aligned_cols=59  Identities=15%  Similarity=0.130  Sum_probs=49.0

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHhCC
Q 007573          479 LLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRVRLLMKEQG  537 (597)
Q Consensus       479 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  537 (597)
                      +...+...|++++|+..++++++.+|+++.++..++.++...|++++|...++++.+..
T Consensus         3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~   61 (65)
T PF13432_consen    3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELD   61 (65)
T ss_dssp             HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence            45667788889999999999998888888888889999999999999998888887644

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=97.95  E-value=0.00017  Score=58.17  Aligned_cols=103  Identities=13%  Similarity=0.046  Sum_probs=65.0

Q ss_pred             HHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCCC----HHHHHHHHH
Q 007573          408 FLSLLSACGHAGKVNESMDLFELMVKVYGIIP-SSEHYTCLVDILSRAGQLEKAWQITQGMP-FEAD----TGVWGSLLA  481 (597)
Q Consensus       408 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~----~~~~~~l~~  481 (597)
                      +......+.+.|++++|.+.|..+.+.++-.+ ....+..+..++.+.|++++|.+.++.+. ..|+    ...+..+..
T Consensus         5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~   84 (119)
T TIGR02795         5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM   84 (119)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence            44445555566666666666666654321111 13345556666777777777777776654 2233    345667777


Q ss_pred             HHHhcCCHHHHHHHHHHHHhcCCCCCchH
Q 007573          482 ACVINLNVELGELAAKKMRELDPQNSAVY  510 (597)
Q Consensus       482 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~  510 (597)
                      ++...|+.++|...++++++..|+++.+.
T Consensus        85 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~  113 (119)
T TIGR02795        85 SLQELGDKEKAKATLQQVIKRYPGSSAAK  113 (119)
T ss_pred             HHHHhCChHHHHHHHHHHHHHCcCChhHH
Confidence            78888888888888888888888876544

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PF13812 PPR_3: Pentatricopeptide repeat domain

Probab=97.92  E-value=2.1e-05  Score=46.92  Aligned_cols=33  Identities=30%  Similarity=0.561  Sum_probs=25.8

Q ss_pred             hhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 007573          371 VSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDP  403 (597)
Q Consensus       371 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p  403 (597)
                      .+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus         2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P   34 (34)
T PF13812_consen    2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP   34 (34)
T ss_pred             cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            467778888888888888888888888777776

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.90  E-value=0.00012  Score=65.99  Aligned_cols=99  Identities=16%  Similarity=0.197  Sum_probs=80.5

Q ss_pred             HHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCC
Q 007573          378 AAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPS-SEHYTCLVDILSRAGQ  456 (597)
Q Consensus       378 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~  456 (597)
                      .-+.+.++|.+|+..|.+.++.. +-|.+.|..-..+|++.|.++.|++-.+..+   .+.|. ...|..|..+|...|+
T Consensus        89 N~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al---~iDp~yskay~RLG~A~~~~gk  164 (304)
T KOG0553|consen   89 NKLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESAL---SIDPHYSKAYGRLGLAYLALGK  164 (304)
T ss_pred             HHHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHH---hcChHHHHHHHHHHHHHHccCc
Confidence            34677899999999999999752 3456777777889999999999998887776   45565 7789999999999999


Q ss_pred             HHHHHHHHhhCC-CCCCHHHHHHHH
Q 007573          457 LEKAWQITQGMP-FEADTGVWGSLL  480 (597)
Q Consensus       457 ~~~A~~~~~~~~-~~p~~~~~~~l~  480 (597)
                      +++|++.|++.. +.|+..+|..=+
T Consensus       165 ~~~A~~aykKaLeldP~Ne~~K~nL  189 (304)
T KOG0553|consen  165 YEEAIEAYKKALELDPDNESYKSNL  189 (304)
T ss_pred             HHHHHHHHHhhhccCCCcHHHHHHH
Confidence            999999998876 888877664433

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=97.90  E-value=0.036  Score=56.06  Aligned_cols=204  Identities=14%  Similarity=0.174  Sum_probs=119.1

Q ss_pred             hhHHHHHHhhCCCCCcchHHHHHHHHHcCCChHHHHHHHccCC-CCCh------------hhHHHHHHHHHcCCChHHHH
Q 007573           97 LQESKNLFQSMPVKNIVSWNCMIAGCIDNDRIDDAFDYFQAMP-ERNT------------ATYNAMISGFLKHGRLEEAT  163 (597)
Q Consensus        97 ~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~-~~~~------------~~~~~l~~~~~~~g~~~~A~  163 (597)
                      .++|.+..+.-  |.+..|..+.......-.++.|...|-+.. -+..            ....+  ..-+--|++++|.
T Consensus       679 ledA~qfiEdn--PHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~a--ei~~~~g~feeae  754 (1189)
T KOG2041|consen  679 LEDAIQFIEDN--PHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRA--EISAFYGEFEEAE  754 (1189)
T ss_pred             hHHHHHHHhcC--CchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhH--hHhhhhcchhHhh
Confidence            34444444332  345556666655555555555555554443 1111            11111  1222348888899


Q ss_pred             HHHccCCCCCchhHHHHHHHHHhCCChhHHHHHHHhcccC--C---cchHHHHHHHHHcCCChHHHHHHHhhcCCCCCCc
Q 007573          164 RLFEQMPRRNVISYTAMLDGFMKKGEVDKARALSDYMSFK--N---VVSWTVMITGYVKNERFCEARELFYRMPDYDKNV  238 (597)
Q Consensus       164 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~  238 (597)
                      +++-+|.++|..     |..+.+.|++-.+.++++.-...  |   ...++.+...++....+++|.+.|..-..     
T Consensus       755 k~yld~drrDLA-----ielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~-----  824 (1189)
T KOG2041|consen  755 KLYLDADRRDLA-----IELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD-----  824 (1189)
T ss_pred             hhhhccchhhhh-----HHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-----
Confidence            888888777653     56667778888777777654222  1   25778888888888888888888876543     


Q ss_pred             hHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhccc
Q 007573          239 FVVTAMITGFCKVGMLENARLLFERIQPKDCVSFNAMIAGYAQNGVAEEALRLFSGMIKMDMQPDDATLVSVFTACSALQ  318 (597)
Q Consensus       239 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~  318 (597)
                        ....+.++.+...+++-+.+-..+++ |....-.+...+.+.|.-++|.+.|-+--    .|.     ..+..|...+
T Consensus       825 --~e~~~ecly~le~f~~LE~la~~Lpe-~s~llp~~a~mf~svGMC~qAV~a~Lr~s----~pk-----aAv~tCv~Ln  892 (1189)
T KOG2041|consen  825 --TENQIECLYRLELFGELEVLARTLPE-DSELLPVMADMFTSVGMCDQAVEAYLRRS----LPK-----AAVHTCVELN  892 (1189)
T ss_pred             --hHhHHHHHHHHHhhhhHHHHHHhcCc-ccchHHHHHHHHHhhchHHHHHHHHHhcc----CcH-----HHHHHHHHHH
Confidence              22456666666667666666666554 44445566777777777777776654321    121     2344555666


Q ss_pred             hhHHHHHH
Q 007573          319 LLNEGRQS  326 (597)
Q Consensus       319 ~~~~a~~~  326 (597)
                      ++.+|.++
T Consensus       893 QW~~avel  900 (1189)
T KOG2041|consen  893 QWGEAVEL  900 (1189)
T ss_pred             HHHHHHHH
Confidence            66555544

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=97.89  E-value=0.00071  Score=69.04  Aligned_cols=140  Identities=14%  Similarity=0.024  Sum_probs=84.4

Q ss_pred             CCChhhHHHHHHHHHH--cC---CHHHHHHHHHHHHHCCCCCCh-HHHHHHHHHHhcc--------CcHHHHHHHHHHhH
Q 007573          367 SPNLVSWNTIIAAFAQ--HG---HYEKALIFFSQMGLNGFDPDG-ITFLSLLSACGHA--------GKVNESMDLFELMV  432 (597)
Q Consensus       367 ~~~~~~~~~li~~~~~--~g---~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~--------g~~~~a~~~~~~~~  432 (597)
                      +.+...|...+.+...  .+   +..+|..+|++..+.  .|+. ..+..+..++...        +++..+.+......
T Consensus       334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~  411 (517)
T PRK10153        334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV  411 (517)
T ss_pred             CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence            5666777777776443  22   366888888888875  5663 3343332222111        11233333333322


Q ss_pred             HhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 007573          433 KVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMP-FEADTGVWGSLLAACVINLNVELGELAAKKMRELDPQNSA  508 (597)
Q Consensus       433 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~  508 (597)
                      .......++..|..+.-.....|++++|...+++.. ..|+...|..++..+...|+.++|.+.+++++.++|.++.
T Consensus       412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt  488 (517)
T PRK10153        412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT  488 (517)
T ss_pred             hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence            211123345666666666666777777777777765 5667667777777777777777777777777777777664

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=97.85  E-value=0.002  Score=60.71  Aligned_cols=156  Identities=9%  Similarity=0.048  Sum_probs=112.1

Q ss_pred             HHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHH-------------H
Q 007573          378 AAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEH-------------Y  444 (597)
Q Consensus       378 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~-------------~  444 (597)
                      ..+...|++++|...-....+.. ..+......-..++...++.+.|...|++..   .+.|+...             +
T Consensus       177 ~cl~~~~~~~~a~~ea~~ilkld-~~n~~al~vrg~~~yy~~~~~ka~~hf~qal---~ldpdh~~sk~~~~~~k~le~~  252 (486)
T KOG0550|consen  177 ECLAFLGDYDEAQSEAIDILKLD-ATNAEALYVRGLCLYYNDNADKAINHFQQAL---RLDPDHQKSKSASMMPKKLEVK  252 (486)
T ss_pred             hhhhhcccchhHHHHHHHHHhcc-cchhHHHHhcccccccccchHHHHHHHhhhh---ccChhhhhHHhHhhhHHHHHHH
Confidence            34566788888887766665432 1122222222234456678888888888765   34454222             1


Q ss_pred             HHHHHHHhhcCCHHHHHHHHhhCC-CCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 007573          445 TCLVDILSRAGQLEKAWQITQGMP-FEA-----DTGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYA  518 (597)
Q Consensus       445 ~~l~~~~~~~g~~~~A~~~~~~~~-~~p-----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~  518 (597)
                      ..=.+-..+.|++.+|.+.+.+.. +.|     +...|.....+..+.|+..+|+.-.+++++++|.-...|..-++++.
T Consensus       253 k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l  332 (486)
T KOG0550|consen  253 KERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHL  332 (486)
T ss_pred             HhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHH
Confidence            112344568899999999998765 444     45567777777889999999999999999999998999999999999


Q ss_pred             hcCCcHHHHHHHHHHHhCC
Q 007573          519 AAGMWRDVTRVRLLMKEQG  537 (597)
Q Consensus       519 ~~g~~~~A~~~~~~~~~~~  537 (597)
                      ..++|++|.+-++...+..
T Consensus       333 ~le~~e~AV~d~~~a~q~~  351 (486)
T KOG0550|consen  333 ALEKWEEAVEDYEKAMQLE  351 (486)
T ss_pred             HHHHHHHHHHHHHHHHhhc
Confidence            9999999999999987754

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=97.84  E-value=0.00023  Score=64.70  Aligned_cols=101  Identities=12%  Similarity=0.052  Sum_probs=87.7

Q ss_pred             CCChHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHhcCCCCCchHHH
Q 007573          438 IPSSEHYTCLVDILSRAGQLEKAWQITQGMP--FEADTGVWGSLLAACVIN---LNVELGELAAKKMRELDPQNSAVYVM  512 (597)
Q Consensus       438 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~---g~~~~a~~~~~~~~~~~p~~~~~~~~  512 (597)
                      +-|.+.|..|..+|.+.|+...|..-|.+..  ..+++..+..+..++..+   ....++..+++++++++|.+..+...
T Consensus       153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l  232 (287)
T COG4235         153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL  232 (287)
T ss_pred             CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence            4468999999999999999999999998765  445677888888875433   24688999999999999999999999


Q ss_pred             HHHHHHhcCCcHHHHHHHHHHHhCCC
Q 007573          513 LSNLYAAAGMWRDVTRVRLLMKEQGV  538 (597)
Q Consensus       513 l~~~~~~~g~~~~A~~~~~~~~~~~~  538 (597)
                      |+..+...|++.+|...|+.|.+...
T Consensus       233 LA~~afe~g~~~~A~~~Wq~lL~~lp  258 (287)
T COG4235         233 LAFAAFEQGDYAEAAAAWQMLLDLLP  258 (287)
T ss_pred             HHHHHHHcccHHHHHHHHHHHHhcCC
Confidence            99999999999999999999998765

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=97.82  E-value=0.00023  Score=61.70  Aligned_cols=82  Identities=13%  Similarity=0.056  Sum_probs=61.2

Q ss_pred             hHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHH
Q 007573          441 SEHYTCLVDILSRAGQLEKAWQITQGMP-FEAD----TGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSN  515 (597)
Q Consensus       441 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~  515 (597)
                      ...+..+...+...|++++|...+++.. ..|+    ...+..++..+...|++++|+..++++++..|.++..+..++.
T Consensus        35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~  114 (172)
T PRK02603         35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAV  114 (172)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence            3445666667777777777777777654 2222    3567777888888888999999999988888888888888888


Q ss_pred             HHHhcCC
Q 007573          516 LYAAAGM  522 (597)
Q Consensus       516 ~~~~~g~  522 (597)
                      +|...|+
T Consensus       115 ~~~~~g~  121 (172)
T PRK02603        115 IYHKRGE  121 (172)
T ss_pred             HHHHcCC
Confidence            8888776

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=97.79  E-value=0.00042  Score=67.70  Aligned_cols=103  Identities=9%  Similarity=0.023  Sum_probs=82.8

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHhhc
Q 007573          376 IIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIP-SSEHYTCLVDILSRA  454 (597)
Q Consensus       376 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~  454 (597)
                      -...+...|++++|++.|+++++.. +-+...|..+..++...|++++|...++.+.+.   .| +...|..+..+|...
T Consensus         8 ~a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l---~P~~~~a~~~lg~~~~~l   83 (356)
T PLN03088          8 KAKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIEL---DPSLAKAYLRKGTACMKL   83 (356)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcCCHHHHHHHHHHHHHh
Confidence            3456778899999999999999763 345677888889999999999999999999863   44 477888999999999


Q ss_pred             CCHHHHHHHHhhCC-CCCCHHHHHHHHHH
Q 007573          455 GQLEKAWQITQGMP-FEADTGVWGSLLAA  482 (597)
Q Consensus       455 g~~~~A~~~~~~~~-~~p~~~~~~~l~~~  482 (597)
                      |++++|...|++.. ..|+.......+..
T Consensus        84 g~~~eA~~~~~~al~l~P~~~~~~~~l~~  112 (356)
T PLN03088         84 EEYQTAKAALEKGASLAPGDSRFTKLIKE  112 (356)
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            99999999999876 66765554444433

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=97.73  E-value=0.00032  Score=60.65  Aligned_cols=94  Identities=11%  Similarity=-0.136  Sum_probs=73.4

Q ss_pred             hHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHH
Q 007573          441 SEHYTCLVDILSRAGQLEKAWQITQGMP-FEAD----TGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSN  515 (597)
Q Consensus       441 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~  515 (597)
                      ...|..++..+...|++++|...+++.. ..|+    ..++..+...+...|++++|+..+++++++.|.....+..++.
T Consensus        35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~  114 (168)
T CHL00033         35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV  114 (168)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence            4456666777777888888888887763 2222    3478888899999999999999999999999998888888888


Q ss_pred             HHH-------hcCCcHHHHHHHHHHH
Q 007573          516 LYA-------AAGMWRDVTRVRLLMK  534 (597)
Q Consensus       516 ~~~-------~~g~~~~A~~~~~~~~  534 (597)
                      ++.       ..|++++|...+++..
T Consensus       115 i~~~~~~~~~~~g~~~~A~~~~~~a~  140 (168)
T CHL00033        115 ICHYRGEQAIEQGDSEIAEAWFDQAA  140 (168)
T ss_pred             HHHHhhHHHHHcccHHHHHHHHHHHH
Confidence            888       8888886666665543

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=97.72  E-value=0.0013  Score=57.10  Aligned_cols=129  Identities=13%  Similarity=0.173  Sum_probs=79.8

Q ss_pred             hhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--hHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChHHHHH
Q 007573          370 LVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPD--GITFLSLLSACGHAGKVNESMDLFELMVKVYGIIP-SSEHYTC  446 (597)
Q Consensus       370 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~  446 (597)
                      ...+..+...+...|++++|...|++.......+.  ...+..+...+.+.|++++|...+++..+.   .| +...+..
T Consensus        35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~  111 (172)
T PRK02603         35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL---NPKQPSALNN  111 (172)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcccHHHHHH
Confidence            34566666677777888888888877765432222  345666677777777777777777777653   23 3455556


Q ss_pred             HHHHHhhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCC
Q 007573          447 LVDILSRAGQLEKAWQITQGMPFEADTGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGM  522 (597)
Q Consensus       447 l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~  522 (597)
                      +..+|...|+...+..-++..                  ...+++|.+.++++++.+|++   |..++..+...|+
T Consensus       112 lg~~~~~~g~~~~a~~~~~~A------------------~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~  166 (172)
T PRK02603        112 IAVIYHKRGEKAEEAGDQDEA------------------EALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR  166 (172)
T ss_pred             HHHHHHHcCChHhHhhCHHHH------------------HHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence            666666666655544322221                  112577888889988888876   4444444444443

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=97.71  E-value=0.00041  Score=52.96  Aligned_cols=90  Identities=19%  Similarity=0.187  Sum_probs=46.2

Q ss_pred             HHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHH
Q 007573          413 SACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMP-FEA-DTGVWGSLLAACVINLNVE  490 (597)
Q Consensus       413 ~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~  490 (597)
                      ..+...|++++|...++.+.+.  .+.+...+..+...+...|++++|.+.+++.. ..| +..++..+...+...|+++
T Consensus         8 ~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (100)
T cd00189           8 NLYYKLGDYDEALEYYEKALEL--DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYE   85 (100)
T ss_pred             HHHHHHhcHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhHH
Confidence            3344445555555555544432  11122344445555555555555555555432 222 3345556666666666667


Q ss_pred             HHHHHHHHHHhcCC
Q 007573          491 LGELAAKKMRELDP  504 (597)
Q Consensus       491 ~a~~~~~~~~~~~p  504 (597)
                      .|...+.++++..|
T Consensus        86 ~a~~~~~~~~~~~~   99 (100)
T cd00189          86 EALEAYEKALELDP   99 (100)
T ss_pred             HHHHHHHHHHccCC
Confidence            77776666666555

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=97.70  E-value=5.3e-05  Score=53.99  Aligned_cols=54  Identities=13%  Similarity=0.190  Sum_probs=46.6

Q ss_pred             HhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHhCC
Q 007573          484 VINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRVRLLMKEQG  537 (597)
Q Consensus       484 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  537 (597)
                      ...|++++|+..++++++.+|+++.++..++.+|.+.|++++|.++++++....
T Consensus         2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~   55 (68)
T PF14559_consen    2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQD   55 (68)
T ss_dssp             HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGG
T ss_pred             hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence            467899999999999999999999999999999999999999999998876543

...

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=97.68  E-value=0.00016  Score=52.28  Aligned_cols=59  Identities=12%  Similarity=0.081  Sum_probs=51.5

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHhCCC
Q 007573          480 LAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRVRLLMKEQGV  538 (597)
Q Consensus       480 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  538 (597)
                      ...+...+++++|.++++++++++|+++..+...+.++...|++++|.+.++...+.+.
T Consensus         2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p   60 (73)
T PF13371_consen    2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSP   60 (73)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence            35678889999999999999999999999999999999999999999999999886553

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=97.66  E-value=9.5e-05  Score=52.07  Aligned_cols=61  Identities=18%  Similarity=0.167  Sum_probs=49.8

Q ss_pred             HHHHHhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 007573          447 LVDILSRAGQLEKAWQITQGMP-FEA-DTGVWGSLLAACVINLNVELGELAAKKMRELDPQNS  507 (597)
Q Consensus       447 l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~  507 (597)
                      +...+...|++++|.+.|+++. ..| +...|..+..++...|++++|...++++++.+|++|
T Consensus         3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p   65 (65)
T PF13432_consen    3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP   65 (65)
T ss_dssp             HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence            4567788899999999998876 456 456888899999999999999999999999999864

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=97.63  E-value=0.0021  Score=60.53  Aligned_cols=134  Identities=12%  Similarity=0.152  Sum_probs=99.8

Q ss_pred             hhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHH-HhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHH
Q 007573          371 VSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSA-CGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVD  449 (597)
Q Consensus       371 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~-~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~  449 (597)
                      .+|-.++....+.+..+.|..+|.+.++.+ ..+...|...... +...++.+.|..+|+...+.+  ..+...|...++
T Consensus         2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f--~~~~~~~~~Y~~   78 (280)
T PF05843_consen    2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKF--PSDPDFWLEYLD   78 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHH--TT-HHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHH
Confidence            367778888888888999999999998543 3344455544444 333567777999999998854  456778888899


Q ss_pred             HHhhcCCHHHHHHHHhhCC-CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 007573          450 ILSRAGQLEKAWQITQGMP-FEAD----TGVWGSLLAACVINLNVELGELAAKKMRELDPQNS  507 (597)
Q Consensus       450 ~~~~~g~~~~A~~~~~~~~-~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~  507 (597)
                      .+.+.|+.+.|..+|++.. .-|.    ...|...+.--.+.|+.+....+.+++.+.-|++.
T Consensus        79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~  141 (280)
T PF05843_consen   79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDN  141 (280)
T ss_dssp             HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-
T ss_pred             HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhh
Confidence            9999999999999999876 2232    34899999999999999999999999999887743

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat

Probab=97.60  E-value=8.3e-05  Score=43.17  Aligned_cols=31  Identities=39%  Similarity=0.713  Sum_probs=24.9

Q ss_pred             hHHHHHHHHHHHcCChhHHHHHHHHhHHCCC
Q 007573          270 VSFNAMIAGYAQNGVAEEALRLFSGMIKMDM  300 (597)
Q Consensus       270 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~  300 (597)
                      ++||.++++|++.|++++|.++|++|.+.|+
T Consensus         1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~   31 (31)
T PF01535_consen    1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI   31 (31)
T ss_pred             CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence            3688888888888888888888888887764

Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.

>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat

Probab=97.58  E-value=9.6e-05  Score=42.89  Aligned_cols=31  Identities=32%  Similarity=0.727  Sum_probs=23.8

Q ss_pred             hhHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 007573          371 VSWNTIIAAFAQHGHYEKALIFFSQMGLNGF  401 (597)
Q Consensus       371 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~  401 (597)
                      ++|+.++++|++.|++++|.++|++|.+.|+
T Consensus         1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~   31 (31)
T PF01535_consen    1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI   31 (31)
T ss_pred             CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence            3678888888888888888888888877663

Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=97.58  E-value=0.11  Score=52.62  Aligned_cols=57  Identities=18%  Similarity=0.095  Sum_probs=30.2

Q ss_pred             CcchHHHHHHHHHcCCChHHHHHHHhhcCCCCCCchHHHHHHHHHHhcCCHHHHHHHHhhcCCC
Q 007573          204 NVVSWTVMITGYVKNERFCEARELFYRMPDYDKNVFVVTAMITGFCKVGMLENARLLFERIQPK  267 (597)
Q Consensus       204 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  267 (597)
                      |....-.+...+.+.|.-++|.+.|-+...  |     .+-+..|...+++.+|.++-++..-|
T Consensus       851 ~s~llp~~a~mf~svGMC~qAV~a~Lr~s~--p-----kaAv~tCv~LnQW~~avelaq~~~l~  907 (1189)
T KOG2041|consen  851 DSELLPVMADMFTSVGMCDQAVEAYLRRSL--P-----KAAVHTCVELNQWGEAVELAQRFQLP  907 (1189)
T ss_pred             ccchHHHHHHHHHhhchHHHHHHHHHhccC--c-----HHHHHHHHHHHHHHHHHHHHHhccch
Confidence            344455556666666666666665544322  2     12344455556666666665554443

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=97.57  E-value=0.0031  Score=64.50  Aligned_cols=135  Identities=16%  Similarity=0.101  Sum_probs=99.1

Q ss_pred             CCCCChHHHHHHHHHHhcc-----CcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhc--------CCHHHHHHHHh
Q 007573          400 GFDPDGITFLSLLSACGHA-----GKVNESMDLFELMVKVYGIIPS-SEHYTCLVDILSRA--------GQLEKAWQITQ  465 (597)
Q Consensus       400 g~~p~~~~~~~ll~~~~~~-----g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~--------g~~~~A~~~~~  465 (597)
                      +.+.|...|...+.+....     +....|..+|+++.+   ..|+ ...|..+..++...        ++...+.+..+
T Consensus       332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~---ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~  408 (517)
T PRK10153        332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK---SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELD  408 (517)
T ss_pred             cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence            4466778888888775432     347789999999885   4676 55565554444322        22345555554


Q ss_pred             hCC----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHhCCC
Q 007573          466 GMP----FEADTGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRVRLLMKEQGV  538 (597)
Q Consensus       466 ~~~----~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  538 (597)
                      +..    ...++..+.++.-.....|++++|...++++++++| +...|..++.++...|+.++|.+.+++......
T Consensus       409 ~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P  484 (517)
T PRK10153        409 NIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRP  484 (517)
T ss_pred             HhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence            422    233556787777777788999999999999999999 477899999999999999999999999877554

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=97.55  E-value=0.014  Score=55.27  Aligned_cols=141  Identities=13%  Similarity=0.187  Sum_probs=72.8

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhcc-CcHHHHHHHHHHhHHhcCCCCC----hHHHHHHHHHH
Q 007573          377 IAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHA-GKVNESMDLFELMVKVYGIIPS----SEHYTCLVDIL  451 (597)
Q Consensus       377 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~-g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~  451 (597)
                      +..|...|++..|-..+.++               ...|... |++++|.+.|++....+.....    ...+..++..+
T Consensus       101 ~~~y~~~G~~~~aA~~~~~l---------------A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~  165 (282)
T PF14938_consen  101 IEIYREAGRFSQAAKCLKEL---------------AEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLY  165 (282)
T ss_dssp             HHHHHHCT-HHHHHHHHHHH---------------HHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCcHHHHHHHHHHH---------------HHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHH
Confidence            44555555555554444433               3345555 6667777666666543322222    33455667777


Q ss_pred             hhcCCHHHHHHHHhhCC---C-CC----CHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-----CchHHHHHHHH
Q 007573          452 SRAGQLEKAWQITQGMP---F-EA----DTG-VWGSLLAACVINLNVELGELAAKKMRELDPQN-----SAVYVMLSNLY  517 (597)
Q Consensus       452 ~~~g~~~~A~~~~~~~~---~-~p----~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~-----~~~~~~l~~~~  517 (597)
                      .+.|++++|.++|+++.   . .+    +.. .+...+-.+...||...|...+++....+|.-     ......|+.++
T Consensus       166 ~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~  245 (282)
T PF14938_consen  166 ARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAY  245 (282)
T ss_dssp             HHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHH
T ss_pred             HHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHH
Confidence            78888888888877643   1 11    111 22223334556788888888888888877753     22334445554


Q ss_pred             Hh--cCCcHHHHHHHHH
Q 007573          518 AA--AGMWRDVTRVRLL  532 (597)
Q Consensus       518 ~~--~g~~~~A~~~~~~  532 (597)
                      -.  ...+++++.-|+.
T Consensus       246 ~~~D~e~f~~av~~~d~  262 (282)
T PF14938_consen  246 EEGDVEAFTEAVAEYDS  262 (282)
T ss_dssp             HTT-CCCHHHHCHHHTT
T ss_pred             HhCCHHHHHHHHHHHcc
Confidence            43  2234444444443

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=97.55  E-value=0.00087  Score=63.07  Aligned_cols=129  Identities=11%  Similarity=0.115  Sum_probs=102.4

Q ss_pred             HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhh-cCCHHHHHHHHhhCC--CCCCHHHHHHHHHH
Q 007573          406 ITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSR-AGQLEKAWQITQGMP--FEADTGVWGSLLAA  482 (597)
Q Consensus       406 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~  482 (597)
                      .+|..++..+.+.+..+.|+.+|.++++.  -..+..+|...+.+-.+ .++.+.|.++|+...  ...+...|...+.-
T Consensus         2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~--~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~   79 (280)
T PF05843_consen    2 LVWIQYMRFMRRTEGIEAARKVFKRARKD--KRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDF   79 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCChHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence            46888889999999999999999999753  23356667776666445 566777999999876  56678899999999


Q ss_pred             HHhcCCHHHHHHHHHHHHhcCCCCC---chHHHHHHHHHhcCCcHHHHHHHHHHHhC
Q 007573          483 CVINLNVELGELAAKKMRELDPQNS---AVYVMLSNLYAAAGMWRDVTRVRLLMKEQ  536 (597)
Q Consensus       483 ~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  536 (597)
                      +...|+.+.|..+|++++..-|...   ..|...+..-.+.|+.+.+.++.+++.+.
T Consensus        80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~  136 (280)
T PF05843_consen   80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL  136 (280)
T ss_dssp             HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred             HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            9999999999999999998765543   57889999999999999999999998763

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=97.53  E-value=0.00033  Score=52.27  Aligned_cols=80  Identities=16%  Similarity=0.185  Sum_probs=32.7

Q ss_pred             CcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHH
Q 007573          419 GKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMPFEADT-GVWGSLLAACVINLNVELGELAAK  497 (597)
Q Consensus       419 g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~  497 (597)
                      |+++.|..+++++.+.....++...+..+..+|.+.|++++|..++++....|.. .....++.++.+.|++++|+.+++
T Consensus         3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l~   82 (84)
T PF12895_consen    3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKLKLDPSNPDIHYLLARCLLKLGKYEEAIKALE   82 (84)
T ss_dssp             T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCHTHHHCHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence            4444444444444443211112223333445555555555555555442222221 222233444555555555555554


Q ss_pred             H
Q 007573          498 K  498 (597)
Q Consensus       498 ~  498 (597)
                      +
T Consensus        83 ~   83 (84)
T PF12895_consen   83 K   83 (84)
T ss_dssp             H
T ss_pred             c
Confidence            4

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=97.53  E-value=0.00084  Score=61.93  Aligned_cols=95  Identities=8%  Similarity=-0.025  Sum_probs=62.6

Q ss_pred             HHHHHHHHHhhcCCHHHHHHHHhhCC-CCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---CchHHHHH
Q 007573          443 HYTCLVDILSRAGQLEKAWQITQGMP-FEADT----GVWGSLLAACVINLNVELGELAAKKMRELDPQN---SAVYVMLS  514 (597)
Q Consensus       443 ~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~  514 (597)
                      .|...+..+.+.|++++|...|+... ..|+.    ..+.-++..|...|++++|...|+++++..|++   +.++..++
T Consensus       145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg  224 (263)
T PRK10803        145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG  224 (263)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence            34444444455566777766666654 23332    355566777777788888888888888777665   45556667


Q ss_pred             HHHHhcCCcHHHHHHHHHHHhCC
Q 007573          515 NLYAAAGMWRDVTRVRLLMKEQG  537 (597)
Q Consensus       515 ~~~~~~g~~~~A~~~~~~~~~~~  537 (597)
                      .++...|++++|.++++.+.+..
T Consensus       225 ~~~~~~g~~~~A~~~~~~vi~~y  247 (263)
T PRK10803        225 VIMQDKGDTAKAKAVYQQVIKKY  247 (263)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHC
Confidence            77777888888888887776543

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=97.51  E-value=0.0022  Score=55.37  Aligned_cols=61  Identities=11%  Similarity=0.145  Sum_probs=29.1

Q ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--hHHHHHHHHHHhccCcHHHHHHHHHHhH
Q 007573          372 SWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPD--GITFLSLLSACGHAGKVNESMDLFELMV  432 (597)
Q Consensus       372 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~  432 (597)
                      .|..+...+...|++++|+..|++.......|.  ..++..+...+...|++++|...++...
T Consensus        37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al   99 (168)
T CHL00033         37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQAL   99 (168)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            444444455555555555555555543321111  1244444455555555555555555444

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=97.50  E-value=0.00029  Score=50.31  Aligned_cols=65  Identities=20%  Similarity=0.167  Sum_probs=53.0

Q ss_pred             ChHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhcCC
Q 007573          440 SSEHYTCLVDILSRAGQLEKAWQITQGMP-FEA-DTGVWGSLLAACVINL-NVELGELAAKKMRELDP  504 (597)
Q Consensus       440 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~p  504 (597)
                      +...|..+...+...|++++|+..|++.. ..| +...|..+..++...| ++++|++.++++++++|
T Consensus         2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            35667778888888888888888887765 445 4568888888999999 79999999999999887

...

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=97.49  E-value=0.019  Score=48.11  Aligned_cols=133  Identities=11%  Similarity=0.064  Sum_probs=103.1

Q ss_pred             CCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCC---CHHHH
Q 007573          401 FDPDGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMP-FEA---DTGVW  476 (597)
Q Consensus       401 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p---~~~~~  476 (597)
                      .-|+...-..+..+....|+..+|...|++...- -+..|....-.+..+....+++.+|...++.+- .+|   ++..-
T Consensus        85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG-~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~  163 (251)
T COG4700          85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSG-IFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGH  163 (251)
T ss_pred             hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhcc-ccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCch
Confidence            3577777777888889999999999999988763 445667888888888889999999988887653 222   23344


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHh
Q 007573          477 GSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRVRLLMKE  535 (597)
Q Consensus       477 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  535 (597)
                      ..+...+...|..+.|+..|+.++.--|. +......+..+.++|+.++|..-+..+.+
T Consensus       164 Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~d  221 (251)
T COG4700         164 LLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAVVD  221 (251)
T ss_pred             HHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence            45677888999999999999999998887 44566677888999998888877766654

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=97.46  E-value=0.049  Score=51.54  Aligned_cols=108  Identities=14%  Similarity=0.142  Sum_probs=63.2

Q ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-----ChH-HHHHHHHHHhccCcHHHHHHHHHHhHHhc-CCCCC--hH
Q 007573          372 SWNTIIAAFAQHGHYEKALIFFSQMGLNGFDP-----DGI-TFLSLLSACGHAGKVNESMDLFELMVKVY-GIIPS--SE  442 (597)
Q Consensus       372 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-----~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-~~~p~--~~  442 (597)
                      .+..+...+.+.|++++|+++|++....-...     +.. .|...+-++...|++..|.+.++...... ++..+  ..
T Consensus       157 ~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~  236 (282)
T PF14938_consen  157 CLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYK  236 (282)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHH
Confidence            34556777888999999999998887643221     111 23333445566788888988888875331 22223  33


Q ss_pred             HHHHHHHHHhh--cCCHHHHHHHHhhCCCCCCHHHHHHHH
Q 007573          443 HYTCLVDILSR--AGQLEKAWQITQGMPFEADTGVWGSLL  480 (597)
Q Consensus       443 ~~~~l~~~~~~--~g~~~~A~~~~~~~~~~p~~~~~~~l~  480 (597)
                      ....|+.++-.  ...+++|..-|+.+. +.|...-..|+
T Consensus       237 ~~~~l~~A~~~~D~e~f~~av~~~d~~~-~ld~w~~~~l~  275 (282)
T PF14938_consen  237 FLEDLLEAYEEGDVEAFTEAVAEYDSIS-RLDNWKTKMLL  275 (282)
T ss_dssp             HHHHHHHHHHTT-CCCHHHHCHHHTTSS----HHHHHHHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHcccC-ccHHHHHHHHH
Confidence            45556666643  346778888888776 44544433333

>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.46  E-value=0.11  Score=49.55  Aligned_cols=104  Identities=15%  Similarity=0.159  Sum_probs=56.8

Q ss_pred             HHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhccchhH
Q 007573          242 TAMITGFCKVGMLENARLLFERIQPKDCVSFNAMIAGYAQNGVAEEALRLFSGMIKMDMQPDDATLVSVFTACSALQLLN  321 (597)
Q Consensus       242 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~  321 (597)
                      +..+.-+...|+...|.++-.+..-+|..-|-..+.+++..++|++-..+...      +-.+..|-.++.+|...|...
T Consensus       181 ~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~~  254 (319)
T PF04840_consen  181 NDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNKK  254 (319)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCHH
Confidence            33445555566666666666666666666666666666666666655543321      112245555566666556555


Q ss_pred             HHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHH
Q 007573          322 EGRQSHVLVIRNGFEANVSVCNAVITMYSRCGGILDSELA  361 (597)
Q Consensus       322 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~  361 (597)
                      +|..+...+          .+..-+.+|.++|++.+|.+.
T Consensus       255 eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~  284 (319)
T PF04840_consen  255 EASKYIPKI----------PDEERVEMYLKCGDYKEAAQE  284 (319)
T ss_pred             HHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHH
Confidence            555554431          113345555555555555443

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=97.46  E-value=0.0043  Score=51.88  Aligned_cols=110  Identities=15%  Similarity=0.132  Sum_probs=94.8

Q ss_pred             HHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 007573          429 ELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMP---FEADTGVWGSLLAACVINLNVELGELAAKKMRELDPQ  505 (597)
Q Consensus       429 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~  505 (597)
                      ++..+...+.|+...-..|..++.+.|+..||...|++..   ..-|......+..+....+++..|...++++.+-+|.
T Consensus        77 Rea~~~~~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa  156 (251)
T COG4700          77 REATEELAIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPA  156 (251)
T ss_pred             HHHHHHHhhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCc
Confidence            3344444667888888899999999999999999999876   5568889999999999999999999999999998876


Q ss_pred             C--CchHHHHHHHHHhcCCcHHHHHHHHHHHhCCC
Q 007573          506 N--SAVYVMLSNLYAAAGMWRDVTRVRLLMKEQGV  538 (597)
Q Consensus       506 ~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  538 (597)
                      -  |.....++..|...|++.+|...|+.....-.
T Consensus       157 ~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~yp  191 (251)
T COG4700         157 FRSPDGHLLFARTLAAQGKYADAESAFEVAISYYP  191 (251)
T ss_pred             cCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCC
Confidence            4  77888999999999999999999999887543

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=97.44  E-value=9.8e-05  Score=43.65  Aligned_cols=33  Identities=36%  Similarity=0.569  Sum_probs=30.9

Q ss_pred             HHHHHhcCCCCCchHHHHHHHHHhcCCcHHHHH
Q 007573          496 AKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTR  528 (597)
Q Consensus       496 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~  528 (597)
                      |+++++++|+++.+|..++.+|...|++++|++
T Consensus         2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~   34 (34)
T PF13431_consen    2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA   34 (34)
T ss_pred             hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence            688999999999999999999999999999863

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=97.43  E-value=0.0015  Score=61.44  Aligned_cols=130  Identities=13%  Similarity=0.051  Sum_probs=92.6

Q ss_pred             HHHHHHHHHHhccCcHHHHHHHHHHh---HHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC--------CCCCH
Q 007573          406 ITFLSLLSACGHAGKVNESMDLFELM---VKVYGIIPS-SEHYTCLVDILSRAGQLEKAWQITQGMP--------FEADT  473 (597)
Q Consensus       406 ~~~~~ll~~~~~~g~~~~a~~~~~~~---~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~p~~  473 (597)
                      ..|..+.+.|.-.|+++.|+...+.-   .+.+|-.-. ...+..+.+.+.-.|.++.|.+.|+.-.        .....
T Consensus       196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA  275 (639)
T KOG1130|consen  196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA  275 (639)
T ss_pred             chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence            34666666667778888888765532   233443322 4567788888899999999998887532        11234


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CC--CCCchHHHHHHHHHhcCCcHHHHHHHHHHHh
Q 007573          474 GVWGSLLAACVINLNVELGELAAKKMREL----DP--QNSAVYVMLSNLYAAAGMWRDVTRVRLLMKE  535 (597)
Q Consensus       474 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~p--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  535 (597)
                      ....+|...|.-..+++.|+.++.+-+.+    +.  ....++..|++++...|..++|..+.+.-++
T Consensus       276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~  343 (639)
T KOG1130|consen  276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR  343 (639)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence            46678888888888999999888776543    22  2367788999999999999999888776654

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=97.39  E-value=0.028  Score=51.50  Aligned_cols=172  Identities=10%  Similarity=0.023  Sum_probs=101.3

Q ss_pred             HHHHHhcCCHHHHHHHHhccCC--CCh-hh---HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhc--
Q 007573          346 ITMYSRCGGILDSELAFRQIHS--PNL-VS---WNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGH--  417 (597)
Q Consensus       346 ~~~~~~~g~~~~A~~~~~~~~~--~~~-~~---~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~--  417 (597)
                      ...+.+.|++++|.+.|+.+..  |+. ..   .-.++.++.+.+++++|...+++..+....-...-+...+.+.+.  
T Consensus        39 A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~  118 (243)
T PRK10866         39 AQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMA  118 (243)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhh
Confidence            3444556788888888777762  222 22   233556677888888888888888765221112223333333221  


Q ss_pred             cC---------------c---HHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCCCCCCHHHHHHH
Q 007573          418 AG---------------K---VNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMPFEADTGVWGSL  479 (597)
Q Consensus       418 ~g---------------~---~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l  479 (597)
                      .+               +   ..+|...|+.+++.+   |+             ..-..+|...+..+...- ...-..+
T Consensus       119 ~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~y---P~-------------S~ya~~A~~rl~~l~~~l-a~~e~~i  181 (243)
T PRK10866        119 LDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGY---PN-------------SQYTTDATKRLVFLKDRL-AKYELSV  181 (243)
T ss_pred             cchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHC---cC-------------ChhHHHHHHHHHHHHHHH-HHHHHHH
Confidence            11               1   223444455554432   22             222334433333322000 0011134


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhcCCCC---CchHHHHHHHHHhcCCcHHHHHHHHHHH
Q 007573          480 LAACVINLNVELGELAAKKMRELDPQN---SAVYVMLSNLYAAAGMWRDVTRVRLLMK  534 (597)
Q Consensus       480 ~~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~  534 (597)
                      ..-|.+.|.+.-|+.-++.+++.-|+.   +.++..+..+|...|..++|.++...+.
T Consensus       182 a~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~  239 (243)
T PRK10866        182 AEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA  239 (243)
T ss_pred             HHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence            455888999999999999999988876   5667888999999999999999887654

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=97.39  E-value=0.25  Score=51.94  Aligned_cols=108  Identities=9%  Similarity=0.224  Sum_probs=59.7

Q ss_pred             hcCChHHHHHHHhhcCC--CCcchHHHHHHHH--HhCCChhHHHHHHhhCCCC---CcchHHHHHHHHHcCCChHHHHHH
Q 007573           62 RAGKISAARQLFDQMTT--KDVITWNAIITGY--WQNGFLQESKNLFQSMPVK---NIVSWNCMIAGCIDNDRIDDAFDY  134 (597)
Q Consensus        62 ~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~--~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~~~~~~A~~~  134 (597)
                      ..+++..|.+..+++.+  ||. .|...+.++  .+.|+.++|..+++....+   |..|...+-.+|.+.++.++|..+
T Consensus        21 d~~qfkkal~~~~kllkk~Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~   99 (932)
T KOG2053|consen   21 DSSQFKKALAKLGKLLKKHPNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHL   99 (932)
T ss_pred             hhHHHHHHHHHHHHHHHHCCCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHH
Confidence            34566666666666544  333 234444443  4566666666666655432   556666666666666666666666


Q ss_pred             HccCC--CCChhhHHHHHHHHHcCCChH----HHHHHHccCC
Q 007573          135 FQAMP--ERNTATYNAMISGFLKHGRLE----EATRLFEQMP  170 (597)
Q Consensus       135 ~~~~~--~~~~~~~~~l~~~~~~~g~~~----~A~~~~~~~~  170 (597)
                      |++..  -|+......+..+|+|.+.+.    .|.+++...+
T Consensus       100 Ye~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~p  141 (932)
T KOG2053|consen  100 YERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFP  141 (932)
T ss_pred             HHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            66665  334444445555566665553    2444444443

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=97.38  E-value=0.00023  Score=50.66  Aligned_cols=50  Identities=18%  Similarity=0.268  Sum_probs=24.6

Q ss_pred             ccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC
Q 007573          417 HAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMP  468 (597)
Q Consensus       417 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  468 (597)
                      ..|++++|.++|+.+...  .+-+...+..++.+|.+.|++++|.++++++.
T Consensus         3 ~~~~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~   52 (68)
T PF14559_consen    3 KQGDYDEAIELLEKALQR--NPDNPEARLLLAQCYLKQGQYDEAEELLERLL   52 (68)
T ss_dssp             HTTHHHHHHHHHHHHHHH--TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCH
T ss_pred             hccCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            345555555555555543  11234444455555555555555555555544

...

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=97.37  E-value=0.0018  Score=51.38  Aligned_cols=88  Identities=17%  Similarity=-0.005  Sum_probs=58.6

Q ss_pred             HHHHHhhcCCHHHHHHHHhhCC-C---CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---CCchHHHHHHHHH
Q 007573          447 LVDILSRAGQLEKAWQITQGMP-F---EAD-TGVWGSLLAACVINLNVELGELAAKKMRELDPQ---NSAVYVMLSNLYA  518 (597)
Q Consensus       447 l~~~~~~~g~~~~A~~~~~~~~-~---~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~  518 (597)
                      +..++-..|+.++|+.+|++.. .   .++ ...+..+.+++...|++++|..++++.....|+   +......++.++.
T Consensus         7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~   86 (120)
T PF12688_consen    7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY   86 (120)
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence            3455556666777766666543 1   111 235556777788888888888888888877776   4555666777788


Q ss_pred             hcCCcHHHHHHHHHHH
Q 007573          519 AAGMWRDVTRVRLLMK  534 (597)
Q Consensus       519 ~~g~~~~A~~~~~~~~  534 (597)
                      ..|+.++|++.+-...
T Consensus        87 ~~gr~~eAl~~~l~~l  102 (120)
T PF12688_consen   87 NLGRPKEALEWLLEAL  102 (120)
T ss_pred             HCCCHHHHHHHHHHHH
Confidence            8888888887765543

>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends

Probab=97.36  E-value=0.0035  Score=47.90  Aligned_cols=81  Identities=12%  Similarity=0.065  Sum_probs=66.7

Q ss_pred             HHHHHHHHHHHcCChhHHHHHHHHhHHCCC-CCCHHHHHHHHHHHhccc--------hhHHHHHHHHHHHHhCCCCcccH
Q 007573          271 SFNAMIAGYAQNGVAEEALRLFSGMIKMDM-QPDDATLVSVFTACSALQ--------LLNEGRQSHVLVIRNGFEANVSV  341 (597)
Q Consensus       271 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~~~ll~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~  341 (597)
                      +-...|..+...+++...-.+|+.+.+.|+ .|+..+|+.++.+.++..        ++-....+++.++..+++|+..+
T Consensus        27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et  106 (120)
T PF08579_consen   27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET  106 (120)
T ss_pred             HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence            445567777778999999999999999999 999999999998876432        34566778899999999999999


Q ss_pred             HHHHHHHHHh
Q 007573          342 CNAVITMYSR  351 (597)
Q Consensus       342 ~~~l~~~~~~  351 (597)
                      |+.++..+.+
T Consensus       107 Ynivl~~Llk  116 (120)
T PF08579_consen  107 YNIVLGSLLK  116 (120)
T ss_pred             HHHHHHHHHH
Confidence            9998887765

Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=97.32  E-value=0.0072  Score=49.92  Aligned_cols=93  Identities=8%  Similarity=0.070  Sum_probs=64.4

Q ss_pred             HHHHHHHHhcCCHHHHHHHHhccC---CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccC
Q 007573          343 NAVITMYSRCGGILDSELAFRQIH---SPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAG  419 (597)
Q Consensus       343 ~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g  419 (597)
                      -.+...+...|++++|.++|+.+.   +.+..-|-.|..++-..|++++|+..|....... +-|+..+-.+..++...|
T Consensus        39 Y~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~lG  117 (157)
T PRK15363         39 YRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLACD  117 (157)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHcC
Confidence            344455566777777777777665   3445566777777777788888888887777654 345666777777777788


Q ss_pred             cHHHHHHHHHHhHHhcC
Q 007573          420 KVNESMDLFELMVKVYG  436 (597)
Q Consensus       420 ~~~~a~~~~~~~~~~~~  436 (597)
                      +.+.|.+.|+..+...+
T Consensus       118 ~~~~A~~aF~~Ai~~~~  134 (157)
T PRK15363        118 NVCYAIKALKAVVRICG  134 (157)
T ss_pred             CHHHHHHHHHHHHHHhc
Confidence            88888887777766433

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=97.26  E-value=0.0014  Score=63.43  Aligned_cols=65  Identities=11%  Similarity=-0.090  Sum_probs=47.0

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc---hHHHHHHHHHhcCCcHHHHHHHHHHHhC
Q 007573          472 DTGVWGSLLAACVINLNVELGELAAKKMRELDPQNSA---VYVMLSNLYAAAGMWRDVTRVRLLMKEQ  536 (597)
Q Consensus       472 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~  536 (597)
                      +...|+.+..+|...|++++|+..|+++++++|++..   +|.+++.+|...|+.++|++.+++..+.
T Consensus        74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            4556777777777777777777777777777777753   3777777777777777777777777664

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=97.26  E-value=0.01  Score=47.13  Aligned_cols=91  Identities=16%  Similarity=0.182  Sum_probs=66.6

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHCCCCCC--hHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHh
Q 007573          376 IIAAFAQHGHYEKALIFFSQMGLNGFDPD--GITFLSLLSACGHAGKVNESMDLFELMVKVYGIIP-SSEHYTCLVDILS  452 (597)
Q Consensus       376 li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~  452 (597)
                      ...++-..|+.++|+.+|++....|....  ...+..+...+...|++++|..+++.....++-.+ +......+..++.
T Consensus         7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~   86 (120)
T PF12688_consen    7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY   86 (120)
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence            44567778999999999999998886654  34677788889999999999999998877532211 2223333455678


Q ss_pred             hcCCHHHHHHHHhh
Q 007573          453 RAGQLEKAWQITQG  466 (597)
Q Consensus       453 ~~g~~~~A~~~~~~  466 (597)
                      ..|+.++|.+.+-.
T Consensus        87 ~~gr~~eAl~~~l~  100 (120)
T PF12688_consen   87 NLGRPKEALEWLLE  100 (120)
T ss_pred             HCCCHHHHHHHHHH
Confidence            88999998887654

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=97.23  E-value=0.045  Score=52.00  Aligned_cols=87  Identities=11%  Similarity=0.057  Sum_probs=40.7

Q ss_pred             ccCcHHHHHHHHHHhHHh--cCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCCCCCCHHH---HHHHHHHHHhcCCHHH
Q 007573          417 HAGKVNESMDLFELMVKV--YGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMPFEADTGV---WGSLLAACVINLNVEL  491 (597)
Q Consensus       417 ~~g~~~~a~~~~~~~~~~--~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~---~~~l~~~~~~~g~~~~  491 (597)
                      +.|.+..|.+.|.+.+..  .+.+|+...|.....+..+.|++.+|+.-.++.. .-|+..   +..-..++...+++++
T Consensus       261 k~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al-~iD~syikall~ra~c~l~le~~e~  339 (486)
T KOG0550|consen  261 KNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEAL-KIDSSYIKALLRRANCHLALEKWEE  339 (486)
T ss_pred             hccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhh-hcCHHHHHHHHHHHHHHHHHHHHHH
Confidence            445555555555554421  0112223344444455556666666655555443 222221   2222233445556666


Q ss_pred             HHHHHHHHHhcCC
Q 007573          492 GELAAKKMRELDP  504 (597)
Q Consensus       492 a~~~~~~~~~~~p  504 (597)
                      |++.++++.+...
T Consensus       340 AV~d~~~a~q~~~  352 (486)
T KOG0550|consen  340 AVEDYEKAMQLEK  352 (486)
T ss_pred             HHHHHHHHHhhcc
Confidence            6666666665443

>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends

Probab=97.23  E-value=0.0058  Score=46.71  Aligned_cols=80  Identities=14%  Similarity=0.246  Sum_probs=65.3

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCChHHHHHHHHHHhccC--------cHHHHHHHHHHhHHhcCCCCChHH
Q 007573          373 WNTIIAAFAQHGHYEKALIFFSQMGLNGF-DPDGITFLSLLSACGHAG--------KVNESMDLFELMVKVYGIIPSSEH  443 (597)
Q Consensus       373 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~~~ll~~~~~~g--------~~~~a~~~~~~~~~~~~~~p~~~~  443 (597)
                      -...|..+...+++...-.+|+.+++.|+ .|+..+|+.++.+..+..        ++-+.+.+|+.|... +++|+.++
T Consensus        28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~-~lKP~~et  106 (120)
T PF08579_consen   28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSN-KLKPNDET  106 (120)
T ss_pred             HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHh-ccCCcHHH
Confidence            34456667777999999999999999999 899999999998876532        345677889999886 89999999


Q ss_pred             HHHHHHHHhh
Q 007573          444 YTCLVDILSR  453 (597)
Q Consensus       444 ~~~l~~~~~~  453 (597)
                      |+.++..+.+
T Consensus       107 Ynivl~~Llk  116 (120)
T PF08579_consen  107 YNIVLGSLLK  116 (120)
T ss_pred             HHHHHHHHHH
Confidence            9998877654

Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].

>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=97.20  E-value=0.0042  Score=60.85  Aligned_cols=115  Identities=15%  Similarity=0.042  Sum_probs=54.2

Q ss_pred             CCCCCHHHHHHHHHHHhccchhHHHHHHHHHHHHhC--CCCcccHHHHHHHHHHhcCCHHHHHHHHhccC----CCChhh
Q 007573          299 DMQPDDATLVSVFTACSALQLLNEGRQSHVLVIRNG--FEANVSVCNAVITMYSRCGGILDSELAFRQIH----SPNLVS  372 (597)
Q Consensus       299 g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~  372 (597)
                      +.+.+...+..+++.+....+++.+..++-......  ...-..+..+++..|.+.|..+.+..+++.=.    =||..+
T Consensus        61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s  140 (429)
T PF10037_consen   61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS  140 (429)
T ss_pred             CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence            345566666667777777777777666665554431  11122233344444444444444444443322    144444


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHH
Q 007573          373 WNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLS  413 (597)
Q Consensus       373 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~  413 (597)
                      +|.++..+.+.|++..|.++...|...+...+..|+...+.
T Consensus       141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~  181 (429)
T PF10037_consen  141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALY  181 (429)
T ss_pred             HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHH
Confidence            44444444444444444444444444333333333333333

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.19  E-value=0.041  Score=48.95  Aligned_cols=134  Identities=7%  Similarity=-0.016  Sum_probs=97.3

Q ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChH-----HHHH
Q 007573          372 SWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSE-----HYTC  446 (597)
Q Consensus       372 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~-----~~~~  446 (597)
                      .-+.++..+...|.+.-.+.++++.++...+.++.....+++.-.+.|+.+.|...|+...+. .-+.+..     +...
T Consensus       179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~-~~kL~~~q~~~~V~~n  257 (366)
T KOG2796|consen  179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKV-TQKLDGLQGKIMVLMN  257 (366)
T ss_pred             HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHH-HhhhhccchhHHHHhh
Confidence            445667777778888899999999998766667788888888888999999999999977665 2233322     3333


Q ss_pred             HHHHHhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 007573          447 LVDILSRAGQLEKAWQITQGMP-FEA-DTGVWGSLLAACVINLNVELGELAAKKMRELDPQN  506 (597)
Q Consensus       447 l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~  506 (597)
                      ....|.-++++.+|...+.+++ ..| ++...|.-.-+..-.|+...|++..+.+++..|.+
T Consensus       258 ~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~  319 (366)
T KOG2796|consen  258 SAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRH  319 (366)
T ss_pred             hhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence            3445666778888888888877 233 44444554445556788888999999999988876

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=97.16  E-value=0.00082  Score=42.69  Aligned_cols=42  Identities=19%  Similarity=0.253  Sum_probs=37.3

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHH
Q 007573          474 GVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSN  515 (597)
Q Consensus       474 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~  515 (597)
                      .+|..+...|...|++++|++.++++++.+|+++.++..++.
T Consensus         2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~   43 (44)
T PF13428_consen    2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ   43 (44)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence            467788999999999999999999999999999988877764

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=97.16  E-value=0.26  Score=47.58  Aligned_cols=87  Identities=7%  Similarity=0.182  Sum_probs=68.7

Q ss_pred             HHHHhhcCC--CCcchHHHHHHHHHhCCChhHHHHHHhhCCCC---CcchHHHHHHHHHcCCChHHHHHHHccCC--CCC
Q 007573           70 RQLFDQMTT--KDVITWNAIITGYWQNGFLQESKNLFQSMPVK---NIVSWNCMIAGCIDNDRIDDAFDYFQAMP--ERN  142 (597)
Q Consensus        70 ~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~~~~~~A~~~~~~~~--~~~  142 (597)
                      .++-+++..  .|+.+|-.||.-|..+|..++..+.+++|..|   -..+|...+++-...+++.....+|.+..  .-+
T Consensus        29 lrLRerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~  108 (660)
T COG5107          29 LRLRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLN  108 (660)
T ss_pred             HHHHHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhcc
Confidence            355566655  46678999999999999999999999999987   45678888888888889999999998887  346


Q ss_pred             hhhHHHHHHHHHcC
Q 007573          143 TATYNAMISGFLKH  156 (597)
Q Consensus       143 ~~~~~~l~~~~~~~  156 (597)
                      ...|...+.--.+.
T Consensus       109 ldLW~lYl~YIRr~  122 (660)
T COG5107         109 LDLWMLYLEYIRRV  122 (660)
T ss_pred             HhHHHHHHHHHHhh
Confidence            67777666644443

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=97.16  E-value=0.0037  Score=59.20  Aligned_cols=87  Identities=15%  Similarity=0.089  Sum_probs=71.3

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHhCCCccCCCeeEEEECCE
Q 007573          473 TGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRVRLLMKEQGVTKQCAYSWIEIGNK  552 (597)
Q Consensus       473 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~s~~~~~~~  552 (597)
                      ..++..|..+|.+.+++..|+....++++++|+|..++..-+.+|...|+++.|+..|+++.+.                
T Consensus       257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~----------------  320 (397)
T KOG0543|consen  257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKL----------------  320 (397)
T ss_pred             HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh----------------
Confidence            3456777778889999999999999999999999999999999999999999999999998763                


Q ss_pred             EEEEEeCCCCCcchHHHHHHHHHHHHHHhhcCC
Q 007573          553 VHYFLGGDMSHPCIDKIHLELKRASVQMKSVDD  585 (597)
Q Consensus       553 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~  585 (597)
                                .|.+..+-..|..+..++++...
T Consensus       321 ----------~P~Nka~~~el~~l~~k~~~~~~  343 (397)
T KOG0543|consen  321 ----------EPSNKAARAELIKLKQKIREYEE  343 (397)
T ss_pred             ----------CCCcHHHHHHHHHHHHHHHHHHH
Confidence                      45666777777777766655443

>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.12  E-value=0.27  Score=46.98  Aligned_cols=104  Identities=17%  Similarity=0.218  Sum_probs=58.0

Q ss_pred             HHHHHhcCCHHHHHHHHhccCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHH
Q 007573          346 ITMYSRCGGILDSELAFRQIHSPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESM  425 (597)
Q Consensus       346 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~  425 (597)
                      +.-+...|+...|.++-.+..-|+-.-|-..+.+++..+++++-..+...      +-.+.-|..++.+|.+.|...+|.
T Consensus       184 i~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~~eA~  257 (319)
T PF04840_consen  184 IRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNKKEAS  257 (319)
T ss_pred             HHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCHHHHH
Confidence            44445556666666666666666666666666666666666655544321      112355566666666666666666


Q ss_pred             HHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhh
Q 007573          426 DLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQG  466 (597)
Q Consensus       426 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~  466 (597)
                      .+...+.           +..-+..|.++|++.+|.+.--+
T Consensus       258 ~yI~k~~-----------~~~rv~~y~~~~~~~~A~~~A~~  287 (319)
T PF04840_consen  258 KYIPKIP-----------DEERVEMYLKCGDYKEAAQEAFK  287 (319)
T ss_pred             HHHHhCC-----------hHHHHHHHHHCCCHHHHHHHHHH
Confidence            5554321           12344556666666666555333

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=97.12  E-value=0.0018  Score=46.79  Aligned_cols=64  Identities=14%  Similarity=0.151  Sum_probs=52.3

Q ss_pred             HHHHhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHH
Q 007573          448 VDILSRAGQLEKAWQITQGMP-FEA-DTGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYV  511 (597)
Q Consensus       448 ~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~  511 (597)
                      ..+|.+.+++++|.++++.+. ..| +...|......+...|++++|...++++++..|+++....
T Consensus         2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~   67 (73)
T PF13371_consen    2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARA   67 (73)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHH
Confidence            356788899999999998876 445 5567888888899999999999999999999998766443

>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses

Probab=97.09  E-value=0.014  Score=50.73  Aligned_cols=105  Identities=19%  Similarity=0.216  Sum_probs=69.5

Q ss_pred             CCCHHHHHHHHHHHh-----ccchhHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHhccCCCChhhHHH
Q 007573          301 QPDDATLVSVFTACS-----ALQLLNEGRQSHVLVIRNGFEANVSVCNAVITMYSRCGGILDSELAFRQIHSPNLVSWNT  375 (597)
Q Consensus       301 ~p~~~~~~~ll~~~~-----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~  375 (597)
                      ..|..+|..++..+.     +.|..+-....+..|.+.|+.-|..+|+.|++.+=+ |.+- -..           .+.+
T Consensus        44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n-----------~fQ~  110 (228)
T PF06239_consen   44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRN-----------FFQA  110 (228)
T ss_pred             cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-ccc-----------HHHH
Confidence            345555555555554     346666667777788888888888888888887754 2211 000           1111


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCc
Q 007573          376 IIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGK  420 (597)
Q Consensus       376 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~  420 (597)
                      +..-|  -.+.+-|++++++|...|+-||..|+..++..+.+.+.
T Consensus       111 ~F~hy--p~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~  153 (228)
T PF06239_consen  111 EFMHY--PRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH  153 (228)
T ss_pred             HhccC--cHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence            11111  23457789999999999999999999999999977664

ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.07  E-value=0.48  Score=48.92  Aligned_cols=82  Identities=17%  Similarity=0.172  Sum_probs=38.5

Q ss_pred             HHHHHHHcCCChHHHHHHHccCCCCC---hhhHHHHHHHHHcCC---ChHHHHHHHccCCC--CCchhHHHHHHHHHhCC
Q 007573          117 CMIAGCIDNDRIDDAFDYFQAMPERN---TATYNAMISGFLKHG---RLEEATRLFEQMPR--RNVISYTAMLDGFMKKG  188 (597)
Q Consensus       117 ~ll~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g  188 (597)
                      .++.-+...+.+..|.++-..+..|.   ..+|......+.+..   +.+.+..+-+++..  ...++|..+.+.-...|
T Consensus       442 ~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~~~~iSy~~iA~~Ay~~G  521 (829)
T KOG2280|consen  442 VVIDRLVDRHLYSVAIQVAKLLNLPESQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKLTPGISYAAIARRAYQEG  521 (829)
T ss_pred             hhhHHHHhcchhHHHHHHHHHhCCccccccHHHHHHHHHHHhccCccchHHHHHHHHHhcccCCCceeHHHHHHHHHhcC
Confidence            44444555555666666555555333   344444444444442   12222222233332  23445555555555556


Q ss_pred             ChhHHHHHHH
Q 007573          189 EVDKARALSD  198 (597)
Q Consensus       189 ~~~~A~~~~~  198 (597)
                      +.+-|..+++
T Consensus       522 R~~LA~kLle  531 (829)
T KOG2280|consen  522 RFELARKLLE  531 (829)
T ss_pred             cHHHHHHHHh
Confidence            6665555543

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.05  E-value=0.033  Score=49.50  Aligned_cols=131  Identities=14%  Similarity=0.043  Sum_probs=104.1

Q ss_pred             HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC--------CCCCHHHHHH
Q 007573          407 TFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMP--------FEADTGVWGS  478 (597)
Q Consensus       407 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~p~~~~~~~  478 (597)
                      ..+.++..+.-.|.+.-....+++.++. .-+.++.....|+.+--..|+.+.|...|+...        ...+..+...
T Consensus       179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~-~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n  257 (366)
T KOG2796|consen  179 VMYSMANCLLGMKEYVLSVDAYHSVIKY-YPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN  257 (366)
T ss_pred             HHHHHHHHHhcchhhhhhHHHHHHHHHh-CCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence            3455666777778888888999998874 445567788889998899999999999998553        1222223333


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHhCCC
Q 007573          479 LLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRVRLLMKEQGV  538 (597)
Q Consensus       479 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  538 (597)
                      ....+.-++++..|...+.++++.+|.++.+.+.-+-++.-.|+..+|++..+.|++..+
T Consensus       258 ~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P  317 (366)
T KOG2796|consen  258 SAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDP  317 (366)
T ss_pred             hhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence            444567788999999999999999999999999888888899999999999999987654

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=97.04  E-value=0.072  Score=51.27  Aligned_cols=159  Identities=18%  Similarity=0.078  Sum_probs=91.3

Q ss_pred             HHHHHHHhcCCHHHHHHHHhccCCC-------ChhhHHHHHHHHHH---cCCHHHHHHHHHHHHHCCCCCChHHHHHHHH
Q 007573          344 AVITMYSRCGGILDSELAFRQIHSP-------NLVSWNTIIAAFAQ---HGHYEKALIFFSQMGLNGFDPDGITFLSLLS  413 (597)
Q Consensus       344 ~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~  413 (597)
                      .++-+|....+++..+++.+.+...       ....--...-++.+   .|+.++|++++..+....-.+++.++..+..
T Consensus       146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR  225 (374)
T PF13281_consen  146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR  225 (374)
T ss_pred             HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence            4445677778888888888777632       11111223334455   7888888888888665555777777776666


Q ss_pred             HHhc---------cCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHH----HHHHHH---hhC-----C--CC
Q 007573          414 ACGH---------AGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLE----KAWQIT---QGM-----P--FE  470 (597)
Q Consensus       414 ~~~~---------~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~----~A~~~~---~~~-----~--~~  470 (597)
                      .|-.         ....++|...|.+.-   .+.|+..+--.++..+...|...    +..++-   ..+     .  ..
T Consensus       226 IyKD~~~~s~~~d~~~ldkAi~~Y~kgF---e~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~  302 (374)
T PF13281_consen  226 IYKDLFLESNFTDRESLDKAIEWYRKGF---EIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKM  302 (374)
T ss_pred             HHHHHHHHcCccchHHHHHHHHHHHHHH---cCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccc
Confidence            5411         223666776666543   44455433333333343344211    222222   110     0  22


Q ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 007573          471 ADTGVWGSLLAACVINLNVELGELAAKKMRELDPQ  505 (597)
Q Consensus       471 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~  505 (597)
                      .+-..+.+++.++.-.|+.++|.+.++++.++.|+
T Consensus       303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~  337 (374)
T PF13281_consen  303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPP  337 (374)
T ss_pred             ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCc
Confidence            34445667777777788888888888888877655

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=97.00  E-value=0.06  Score=54.02  Aligned_cols=180  Identities=13%  Similarity=0.112  Sum_probs=108.1

Q ss_pred             HHHHHHHHHHHcCC--hhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhccchhHHHHHHHHHHHHhCCCCcccHHHHHHHH
Q 007573          271 SFNAMIAGYAQNGV--AEEALRLFSGMIKMDMQPDDATLVSVFTACSALQLLNEGRQSHVLVIRNGFEANVSVCNAVITM  348 (597)
Q Consensus       271 ~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  348 (597)
                      .++..=.+|.+..+  +-+.+.-+++|.+.|-.|+...   +...|+-.|.+.+|.++|.+   .|.      -|..+.+
T Consensus       600 ~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~---~G~------enRAlEm  667 (1081)
T KOG1538|consen  600 DFETARKAYIRVRDLRYLELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKR---SGH------ENRALEM  667 (1081)
T ss_pred             hhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHH---cCc------hhhHHHH
Confidence            34455556666544  4456667788888898898764   34557778889888888754   332      2445667


Q ss_pred             HHhcCCHHHHHHHHhccCC--------------CChhhHHHHHHHHHHcCCHHHHHHHHHH------HHHCCCC---CCh
Q 007573          349 YSRCGGILDSELAFRQIHS--------------PNLVSWNTIIAAFAQHGHYEKALIFFSQ------MGLNGFD---PDG  405 (597)
Q Consensus       349 ~~~~g~~~~A~~~~~~~~~--------------~~~~~~~~li~~~~~~g~~~~A~~~~~~------m~~~g~~---p~~  405 (597)
                      |.....++.|.+++.....              .++.-=.+....+...|+.++|..+.-+      +.+-+-+   .+.
T Consensus       668 yTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~er  747 (1081)
T KOG1538|consen  668 YTDLRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAER  747 (1081)
T ss_pred             HHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhh
Confidence            7777777777777755431              0111111223344556776666655321      1111112   223


Q ss_pred             HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCCC
Q 007573          406 ITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMP-FEAD  472 (597)
Q Consensus       406 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~  472 (597)
                      .+...+..-+.+...+..|-++|..|-.          ...++++....+++.+|..+-+..+ ..||
T Consensus       748 e~l~~~a~ylk~l~~~gLAaeIF~k~gD----------~ksiVqlHve~~~W~eAFalAe~hPe~~~d  805 (1081)
T KOG1538|consen  748 EPLLLCATYLKKLDSPGLAAEIFLKMGD----------LKSLVQLHVETQRWDEAFALAEKHPEFKDD  805 (1081)
T ss_pred             hHHHHHHHHHhhccccchHHHHHHHhcc----------HHHHhhheeecccchHhHhhhhhCcccccc
Confidence            4444444555566667777777776632          2456778888899999999888877 4444

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=96.99  E-value=0.012  Score=54.47  Aligned_cols=102  Identities=8%  Similarity=0.007  Sum_probs=67.8

Q ss_pred             HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCCC----HHHHHHHH
Q 007573          407 TFLSLLSACGHAGKVNESMDLFELMVKVYGIIPS-SEHYTCLVDILSRAGQLEKAWQITQGMP-FEAD----TGVWGSLL  480 (597)
Q Consensus       407 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~----~~~~~~l~  480 (597)
                      .|...+....+.|++++|...|+.+.+.+.-.+- +..+-.+...|...|++++|...|+.+. ..|+    ...+..++
T Consensus       145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg  224 (263)
T PRK10803        145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG  224 (263)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence            3444444445567777777777777765422211 3455667777777788888877777664 2232    34555566


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 007573          481 AACVINLNVELGELAAKKMRELDPQNSA  508 (597)
Q Consensus       481 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~  508 (597)
                      ..+...|+.++|...++++++..|++..
T Consensus       225 ~~~~~~g~~~~A~~~~~~vi~~yP~s~~  252 (263)
T PRK10803        225 VIMQDKGDTAKAKAVYQQVIKKYPGTDG  252 (263)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHCcCCHH
Confidence            7777889999999999999998888653

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=96.97  E-value=0.0026  Score=46.59  Aligned_cols=62  Identities=8%  Similarity=0.001  Sum_probs=45.7

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCC---CchHHHHHHHHHhcCCcHHHHHHHHHHHh
Q 007573          474 GVWGSLLAACVINLNVELGELAAKKMREL----DPQN---SAVYVMLSNLYAAAGMWRDVTRVRLLMKE  535 (597)
Q Consensus       474 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  535 (597)
                      .+++.+...|...|++++|+..+++++++    ++++   ..++..++.+|...|++++|.+.+++..+
T Consensus         6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~   74 (78)
T PF13424_consen    6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD   74 (78)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            36677777788888888888888888754    2222   45677888888888888888888887654

...

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=96.97  E-value=0.36  Score=45.81  Aligned_cols=272  Identities=14%  Similarity=0.108  Sum_probs=163.1

Q ss_pred             cCCHHHHHHHHhhcC---CCChhHHHHHHHH--HHHcCChhHHHHHHHHhHHCCCCCCHH--HHHHHHHHHhccchhHHH
Q 007573          251 VGMLENARLLFERIQ---PKDCVSFNAMIAG--YAQNGVAEEALRLFSGMIKMDMQPDDA--TLVSVFTACSALQLLNEG  323 (597)
Q Consensus       251 ~g~~~~A~~~~~~~~---~~~~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~g~~p~~~--~~~~ll~~~~~~~~~~~a  323 (597)
                      .|+-..|.+.-.+..   ..|....-.++.+  -.-.|+++.|.+-|+.|..   .|...  ....+.-..-+.|+.+.+
T Consensus        97 AGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~---dPEtRllGLRgLyleAqr~GareaA  173 (531)
T COG3898          97 AGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD---DPETRLLGLRGLYLEAQRLGAREAA  173 (531)
T ss_pred             cCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc---ChHHHHHhHHHHHHHHHhcccHHHH
Confidence            345555554444322   2343333333332  2335777777777777764   22221  122333333466777777


Q ss_pred             HHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHhccC-----CCChh--hHHHHHHHHH---HcCCHHHHHHHH
Q 007573          324 RQSHVLVIRNGFEANVSVCNAVITMYSRCGGILDSELAFRQIH-----SPNLV--SWNTIIAAFA---QHGHYEKALIFF  393 (597)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~--~~~~li~~~~---~~g~~~~A~~~~  393 (597)
                      .++-+..-..- +.-.....+.+...+..|+++.|+++.+.-.     +++..  .-..|+.+-+   -.-+...|...-
T Consensus       174 r~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A  252 (531)
T COG3898         174 RHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDA  252 (531)
T ss_pred             HHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHH
Confidence            76666554443 3335566777788888888888888876543     34433  1222222211   133466666665


Q ss_pred             HHHHHCCCCCChH-HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHH--HH--HHhhCC
Q 007573          394 SQMGLNGFDPDGI-TFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKA--WQ--ITQGMP  468 (597)
Q Consensus       394 ~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A--~~--~~~~~~  468 (597)
                      .+..+  +.||-. .-.....++.+.|++.++-.+++.+-+.   .|.+.....  ..+.+.|+....  .+  -++.|.
T Consensus       253 ~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~---ePHP~ia~l--Y~~ar~gdta~dRlkRa~~L~slk  325 (531)
T COG3898         253 LEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKA---EPHPDIALL--YVRARSGDTALDRLKRAKKLESLK  325 (531)
T ss_pred             HHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhc---CCChHHHHH--HHHhcCCCcHHHHHHHHHHHHhcC
Confidence            55544  467643 3344457888999999999999988754   555555433  334566653322  11  123333


Q ss_pred             CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhc-CCcHHHHHHHHHHHh
Q 007573          469 FEADTGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAA-GMWRDVTRVRLLMKE  535 (597)
Q Consensus       469 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~  535 (597)
                       +.+......+..+-...|++..|..-.+.+....|. ...|..|+++-... |+-.++...+-+..+
T Consensus       326 -~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pr-es~~lLlAdIeeAetGDqg~vR~wlAqav~  391 (531)
T COG3898         326 -PNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPR-ESAYLLLADIEEAETGDQGKVRQWLAQAVK  391 (531)
T ss_pred             -ccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCch-hhHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence             334556777778888999999999999999998887 55688888886665 999998888776654

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.96  E-value=0.6  Score=48.23  Aligned_cols=321  Identities=10%  Similarity=0.057  Sum_probs=155.3

Q ss_pred             HHHHHHHHhCCChhHHHHHHHhcccCC---cchHHHHHHHHHcCCC---hHHHHHHHhhcCCCCCCchHHHHHHHHHHhc
Q 007573          178 TAMLDGFMKKGEVDKARALSDYMSFKN---VVSWTVMITGYVKNER---FCEARELFYRMPDYDKNVFVVTAMITGFCKV  251 (597)
Q Consensus       178 ~~li~~~~~~g~~~~A~~~~~~m~~~~---~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~  251 (597)
                      ..+|+-+...+.+..|+++-..+..|.   ...|.....-+.+..+   -+-+..+-+++...--....|..++.-...+
T Consensus       441 ~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~~~~iSy~~iA~~Ay~~  520 (829)
T KOG2280|consen  441 EVVIDRLVDRHLYSVAIQVAKLLNLPESQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKLTPGISYAAIARRAYQE  520 (829)
T ss_pred             hhhhHHHHhcchhHHHHHHHHHhCCccccccHHHHHHHHHHHhccCccchHHHHHHHHHhcccCCCceeHHHHHHHHHhc
Confidence            345666677777777777777776654   4445555555554422   2222222222222112334556666666677


Q ss_pred             CCHHHHHHHHhhcCCC--------ChhHHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhccchhHHH
Q 007573          252 GMLENARLLFERIQPK--------DCVSFNAMIAGYAQNGVAEEALRLFSGMIKMDMQPDDATLVSVFTACSALQLLNEG  323 (597)
Q Consensus       252 g~~~~A~~~~~~~~~~--------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a  323 (597)
                      |+.+-|..+++.=+..        +..-+...+.-..+.|+.+-...++..+.++   -+...|...+      .+...|
T Consensus       521 GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~---~~~s~l~~~l------~~~p~a  591 (829)
T KOG2280|consen  521 GRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNK---LNRSSLFMTL------RNQPLA  591 (829)
T ss_pred             CcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHH---HHHHHHHHHH------Hhchhh
Confidence            7777777777643321        1123445555566667776666666655542   1111111111      112223


Q ss_pred             HHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHH--hccC-----CCChhhHHHHHHHHHHcCC----------H
Q 007573          324 RQSHVLVIRNGFEANVSVCNAVITMYSRCGGILDSELAF--RQIH-----SPNLVSWNTIIAAFAQHGH----------Y  386 (597)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~--~~~~-----~~~~~~~~~li~~~~~~g~----------~  386 (597)
                      ..++.+..+..-.      ..+-+.|.. ++...+...|  +...     ++-..........+.+...          .
T Consensus       592 ~~lY~~~~r~~~~------~~l~d~y~q-~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~ed~  664 (829)
T KOG2280|consen  592 LSLYRQFMRHQDR------ATLYDFYNQ-DDNHQALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKALEDQ  664 (829)
T ss_pred             hHHHHHHHHhhch------hhhhhhhhc-ccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHHHHH
Confidence            3333333221100      001111111 1111111111  1100     0001111112222222211          1


Q ss_pred             HHHHHHHHHHHH-CCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHh
Q 007573          387 EKALIFFSQMGL-NGFDPDGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQ  465 (597)
Q Consensus       387 ~~A~~~~~~m~~-~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~  465 (597)
                      .+-+.+.+.+.. .|..-...+.+-.+.-+...|+..+|.++-.+.    . -||...|..=+.+++..+++++-+++-+
T Consensus       665 ~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~F----k-ipdKr~~wLk~~aLa~~~kweeLekfAk  739 (829)
T KOG2280|consen  665 MKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDF----K-IPDKRLWWLKLTALADIKKWEELEKFAK  739 (829)
T ss_pred             HHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhc----C-CcchhhHHHHHHHHHhhhhHHHHHHHHh
Confidence            112222222221 232333445555555666677777777664433    2 3666677667777777788877777776


Q ss_pred             hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcHHHHHHH
Q 007573          466 GMPFEADTGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRVR  530 (597)
Q Consensus       466 ~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~  530 (597)
                      ...   .+.-|.-+..+|.+.|+.++|.+++-+.-.        +.-...+|.+.|++.+|.+.-
T Consensus       740 skk---sPIGy~PFVe~c~~~~n~~EA~KYiprv~~--------l~ekv~ay~~~~~~~eAad~A  793 (829)
T KOG2280|consen  740 SKK---SPIGYLPFVEACLKQGNKDEAKKYIPRVGG--------LQEKVKAYLRVGDVKEAADLA  793 (829)
T ss_pred             ccC---CCCCchhHHHHHHhcccHHHHhhhhhccCC--------hHHHHHHHHHhccHHHHHHHH
Confidence            654   245566677777788888877777655421        125566777777777777653

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=96.95  E-value=0.42  Score=46.34  Aligned_cols=62  Identities=10%  Similarity=0.050  Sum_probs=52.9

Q ss_pred             CHHHHHHHHHH--HHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHH
Q 007573          472 DTGVWGSLLAA--CVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRVRLLMK  534 (597)
Q Consensus       472 ~~~~~~~l~~~--~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  534 (597)
                      +...-|.|..+  ...+|++.++.-.-.-+.+..| ++.+|..+|-++....++++|..++..+.
T Consensus       459 e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~LP  522 (549)
T PF07079_consen  459 EEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKLP  522 (549)
T ss_pred             HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhCC
Confidence            34466777776  5688999999998888889999 79999999999999999999999998653

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=96.93  E-value=0.028  Score=55.26  Aligned_cols=117  Identities=8%  Similarity=0.008  Sum_probs=83.4

Q ss_pred             CChhHHHHHHHHHHHcCChhHHHHHHHHhHHC--CCCCCHHHHHHHHHHHhccchhHHHHHHHHHHHHhCCCCcccHHHH
Q 007573          267 KDCVSFNAMIAGYAQNGVAEEALRLFSGMIKM--DMQPDDATLVSVFTACSALQLLNEGRQSHVLVIRNGFEANVSVCNA  344 (597)
Q Consensus       267 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  344 (597)
                      -+......++..+....+.+.+..++.+....  ....-..|..++++.|...|..+.+..++..-...|+=||..++|.
T Consensus        64 vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~  143 (429)
T PF10037_consen   64 VSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNL  143 (429)
T ss_pred             CcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHH
Confidence            35556667777777777778888888777664  2223344556888888888888888888888888888888888888


Q ss_pred             HHHHHHhcCCHHHHHHHHhccC----CCChhhHHHHHHHHHHc
Q 007573          345 VITMYSRCGGILDSELAFRQIH----SPNLVSWNTIIAAFAQH  383 (597)
Q Consensus       345 l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~  383 (597)
                      |++.+.+.|++..|.++...|.    -.+..++...+.+|.+.
T Consensus       144 Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~  186 (429)
T PF10037_consen  144 LMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY  186 (429)
T ss_pred             HHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence            8888888888888888877665    23444554444444443

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=96.92  E-value=0.28  Score=45.01  Aligned_cols=50  Identities=10%  Similarity=0.074  Sum_probs=22.5

Q ss_pred             HHhccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHH
Q 007573          414 ACGHAGKVNESMDLFELMVKVYGIIPS-SEHYTCLVDILSRAGQLEKAWQI  463 (597)
Q Consensus       414 ~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~  463 (597)
                      -|.+.|.+..|..-++.+.+.+.-.|. .+....++.+|...|..++|.+.
T Consensus       184 ~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~  234 (243)
T PRK10866        184 YYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKV  234 (243)
T ss_pred             HHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHH
Confidence            344445555555555555544332222 33344444445555555444443

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=96.80  E-value=0.077  Score=47.30  Aligned_cols=161  Identities=12%  Similarity=0.105  Sum_probs=86.6

Q ss_pred             HHHhcCCHHHHHHHHhccCC--CC----hhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--hHHHHHHHHHHh---
Q 007573          348 MYSRCGGILDSELAFRQIHS--PN----LVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPD--GITFLSLLSACG---  416 (597)
Q Consensus       348 ~~~~~g~~~~A~~~~~~~~~--~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~ll~~~~---  416 (597)
                      .+...|++.+|...|+.+..  |+    ....-.++.++.+.|++++|...++++++.  -|+  ..-+...+.+.+   
T Consensus        14 ~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~--yP~~~~~~~A~Y~~g~~~~~   91 (203)
T PF13525_consen   14 EALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL--YPNSPKADYALYMLGLSYYK   91 (203)
T ss_dssp             HHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH---TT-TTHHHHHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCcchhhHHHHHHHHHHH
Confidence            34455666666666666651  11    224445666777778888888887777654  222  111221221111   


Q ss_pred             ----------ccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc
Q 007573          417 ----------HAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMPFEADTGVWGSLLAACVIN  486 (597)
Q Consensus       417 ----------~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~  486 (597)
                                ..+...+|...|+.+++                -|=......+|...+..+... -...-..+...|.+.
T Consensus        92 ~~~~~~~~~~D~~~~~~A~~~~~~li~----------------~yP~S~y~~~A~~~l~~l~~~-la~~e~~ia~~Y~~~  154 (203)
T PF13525_consen   92 QIPGILRSDRDQTSTRKAIEEFEELIK----------------RYPNSEYAEEAKKRLAELRNR-LAEHELYIARFYYKR  154 (203)
T ss_dssp             HHHHHH-TT---HHHHHHHHHHHHHHH----------------H-TTSTTHHHHHHHHHHHHHH-HHHHHHHHHHHHHCT
T ss_pred             hCccchhcccChHHHHHHHHHHHHHHH----------------HCcCchHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHc
Confidence                      11122334444444443                333334444444443333200 001112245568899


Q ss_pred             CCHHHHHHHHHHHHhcCCCC---CchHHHHHHHHHhcCCcHHHH
Q 007573          487 LNVELGELAAKKMRELDPQN---SAVYVMLSNLYAAAGMWRDVT  527 (597)
Q Consensus       487 g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~A~  527 (597)
                      |.+..|..-++.+++.-|+.   ..+...++.+|.+.|..+.|.
T Consensus       155 ~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~  198 (203)
T PF13525_consen  155 GKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD  198 (203)
T ss_dssp             T-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred             ccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence            99999999999999999987   456778899999999988544

>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses

Probab=96.80  E-value=0.018  Score=50.02  Aligned_cols=96  Identities=22%  Similarity=0.353  Sum_probs=75.0

Q ss_pred             HHHhcc--CCCChhhHHHHHHHHHH-----cCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccC-------------
Q 007573          360 LAFRQI--HSPNLVSWNTIIAAFAQ-----HGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAG-------------  419 (597)
Q Consensus       360 ~~~~~~--~~~~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g-------------  419 (597)
                      ..|+..  ...+-.+|..++..|.+     .|..+=....++.|.+-|+.-|..+|+.|+..+=+..             
T Consensus        35 ~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~h  114 (228)
T PF06239_consen   35 ELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMH  114 (228)
T ss_pred             HHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhcc
Confidence            344444  35677788888887765     4677777888899999999999999999999875522             


Q ss_pred             ---cHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCC
Q 007573          420 ---KVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQ  456 (597)
Q Consensus       420 ---~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~  456 (597)
                         +-+-|++++++|... |+.||.+++..+++.+++.+.
T Consensus       115 yp~Qq~c~i~lL~qME~~-gV~Pd~Et~~~ll~iFG~~s~  153 (228)
T PF06239_consen  115 YPRQQECAIDLLEQMENN-GVMPDKETEQMLLNIFGRKSH  153 (228)
T ss_pred             CcHHHHHHHHHHHHHHHc-CCCCcHHHHHHHHHHhccccH
Confidence               246688999999765 999999999999999877764

ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].

>PRK11619 lytic murein transglycosylase; Provisional

Probab=96.79  E-value=0.95  Score=48.01  Aligned_cols=114  Identities=5%  Similarity=-0.059  Sum_probs=55.3

Q ss_pred             cHHHHHHHHHHhHHhcCCCCC--hHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 007573          420 KVNESMDLFELMVKVYGIIPS--SEHYTCLVDILSRAGQLEKAWQITQGMP-FEADTGVWGSLLAACVINLNVELGELAA  496 (597)
Q Consensus       420 ~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~  496 (597)
                      +.+.|...+........+.+.  ......++......+...+|...+.... ...+...+..-+..-...++++.+...+
T Consensus       256 d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~~~~~~~e~r~r~Al~~~dw~~~~~~i  335 (644)
T PRK11619        256 DAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRSQSTSLLERRVRMALGTGDRRGLNTWL  335 (644)
T ss_pred             CHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccccCCcHHHHHHHHHHHHccCHHHHHHHH
Confidence            446666666655443333322  1223333333333322445555555443 1123333333333434566666665555


Q ss_pred             HHHHhcCCCCCchHHHHHHHHHhcCCcHHHHHHHHHH
Q 007573          497 KKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRVRLLM  533 (597)
Q Consensus       497 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  533 (597)
                      ..+-+.....+....-++.++...|+.++|..+|+.+
T Consensus       336 ~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~  372 (644)
T PRK11619        336 ARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQL  372 (644)
T ss_pred             HhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            5553332333555666666666667777666666665

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=96.79  E-value=0.023  Score=47.60  Aligned_cols=62  Identities=21%  Similarity=0.181  Sum_probs=53.2

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHh
Q 007573          474 GVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRVRLLMKE  535 (597)
Q Consensus       474 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  535 (597)
                      .+...++..+...|++++|+..+++++..+|-+...|..++.+|...|+..+|.+.|+++.+
T Consensus        63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~  124 (146)
T PF03704_consen   63 DALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR  124 (146)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence            34566777788999999999999999999999999999999999999999999999999864

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=96.70  E-value=0.084  Score=48.42  Aligned_cols=105  Identities=13%  Similarity=0.072  Sum_probs=81.4

Q ss_pred             CCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcC---CHHHHHHHHhhCC-CCC-CHHHH
Q 007573          402 DPDGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAG---QLEKAWQITQGMP-FEA-DTGVW  476 (597)
Q Consensus       402 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~-~~p-~~~~~  476 (597)
                      +-|...|..|...|...|+.+.|...|....+..  .+++..+..+..++....   ...++.++++++. .+| |....
T Consensus       153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~--g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral  230 (287)
T COG4235         153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA--GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRAL  230 (287)
T ss_pred             CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHH
Confidence            4567889999999999999999999999887642  344667777777665433   4567888998876 555 45566


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 007573          477 GSLLAACVINLNVELGELAAKKMRELDPQNSA  508 (597)
Q Consensus       477 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~  508 (597)
                      .-|...+...|++.+|...++.+++..|.+..
T Consensus       231 ~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~  262 (287)
T COG4235         231 SLLAFAAFEQGDYAEAAAAWQMLLDLLPADDP  262 (287)
T ss_pred             HHHHHHHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence            66777799999999999999999999887643

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=96.61  E-value=0.03  Score=53.33  Aligned_cols=95  Identities=13%  Similarity=0.017  Sum_probs=78.9

Q ss_pred             HHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHh
Q 007573          442 EHYTCLVDILSRAGQLEKAWQITQGMP--FEADTGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAA  519 (597)
Q Consensus       442 ~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~  519 (597)
                      .++..+.-.|.+.+++.+|++..++..  .++|.-.+-.-..+|...|+++.|+..|+++++++|.|..+-.-++.+-.+
T Consensus       258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k  337 (397)
T KOG0543|consen  258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQK  337 (397)
T ss_pred             HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence            356778888999999999999988765  445677888889999999999999999999999999998888888877776


Q ss_pred             cCCcHHH-HHHHHHHHhC
Q 007573          520 AGMWRDV-TRVRLLMKEQ  536 (597)
Q Consensus       520 ~g~~~~A-~~~~~~~~~~  536 (597)
                      ..++++. .++|..|..+
T Consensus       338 ~~~~~~kekk~y~~mF~k  355 (397)
T KOG0543|consen  338 IREYEEKEKKMYANMFAK  355 (397)
T ss_pred             HHHHHHHHHHHHHHHhhc
Confidence            6665554 7889999763

>PRK11906 transcriptional regulator; Provisional

Probab=96.58  E-value=0.43  Score=46.94  Aligned_cols=144  Identities=10%  Similarity=0.140  Sum_probs=95.6

Q ss_pred             HHHHHHHHHHHHH-CCCCCCh-HHHHHHHHHHh---------ccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhc
Q 007573          386 YEKALIFFSQMGL-NGFDPDG-ITFLSLLSACG---------HAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRA  454 (597)
Q Consensus       386 ~~~A~~~~~~m~~-~g~~p~~-~~~~~ll~~~~---------~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~  454 (597)
                      .+.|+.+|.+... +.+.|+- ..|..+..++.         ......+|.+.-+...+.  -+-|+.....+..++.-.
T Consensus       274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAvel--d~~Da~a~~~~g~~~~~~  351 (458)
T PRK11906        274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDI--TTVDGKILAIMGLITGLS  351 (458)
T ss_pred             HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHhh
Confidence            4678888888872 2346663 33333332221         122345556665555532  233577777788888888


Q ss_pred             CCHHHHHHHHhhCC-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHH--HHHhcCCcHHHHHHH
Q 007573          455 GQLEKAWQITQGMP-FEAD-TGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSN--LYAAAGMWRDVTRVR  530 (597)
Q Consensus       455 g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~--~~~~~g~~~~A~~~~  530 (597)
                      |+++.|...|++.. ..|| ..+|......+.-.|+.++|.+.++++++++|.-..+-..-.+  .|+. ...++|+++|
T Consensus       352 ~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~-~~~~~~~~~~  430 (458)
T PRK11906        352 GQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVP-NPLKNNIKLY  430 (458)
T ss_pred             cchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcC-CchhhhHHHH
Confidence            88999999998876 6666 4577777777888999999999999999999987444433333  4544 4567778776


Q ss_pred             HH
Q 007573          531 LL  532 (597)
Q Consensus       531 ~~  532 (597)
                      -+
T Consensus       431 ~~  432 (458)
T PRK11906        431 YK  432 (458)
T ss_pred             hh
Confidence            54

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=96.58  E-value=0.0039  Score=58.74  Aligned_cols=46  Identities=11%  Similarity=0.177  Sum_probs=30.7

Q ss_pred             HHHHhcCChHHHHHHHhhcCCCCcch-------HHHHHHHHHhCCChhHHHHH
Q 007573           58 SALSRAGKISAARQLFDQMTTKDVIT-------WNAIITGYWQNGFLQESKNL  103 (597)
Q Consensus        58 ~~~~~~g~~~~A~~~~~~~~~~~~~~-------~~~li~~~~~~g~~~~A~~~  103 (597)
                      .-++|.|+...-...|+...+-...-       |..|..+|.-.+++++|++.
T Consensus        25 ERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~y   77 (639)
T KOG1130|consen   25 ERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKY   77 (639)
T ss_pred             HHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhh
Confidence            44678899999999999887744433       44444555555566777654

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=96.55  E-value=0.021  Score=44.73  Aligned_cols=90  Identities=18%  Similarity=0.078  Sum_probs=70.2

Q ss_pred             HHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CCC---CchHHHHHHHHHhcCC
Q 007573          449 DILSRAGQLEKAWQITQGMP--FEADTGVWGSLLAACVINLNVELGELAAKKMRELD-PQN---SAVYVMLSNLYAAAGM  522 (597)
Q Consensus       449 ~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-p~~---~~~~~~l~~~~~~~g~  522 (597)
                      -+++..|+++.|++.|.+..  .+.....||.-..++.-+|+.++|..-+.+++++. |..   -..|..-+..|...|+
T Consensus        51 valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~  130 (175)
T KOG4555|consen   51 IALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN  130 (175)
T ss_pred             HHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence            35677888888888887754  33467788888899999999999999999999874 433   3456677888888999


Q ss_pred             cHHHHHHHHHHHhCCC
Q 007573          523 WRDVTRVRLLMKEQGV  538 (597)
Q Consensus       523 ~~~A~~~~~~~~~~~~  538 (597)
                      -+.|..-|+..-+.|-
T Consensus       131 dd~AR~DFe~AA~LGS  146 (175)
T KOG4555|consen  131 DDAARADFEAAAQLGS  146 (175)
T ss_pred             hHHHHHhHHHHHHhCC
Confidence            9999998888877663

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=96.50  E-value=0.077  Score=43.14  Aligned_cols=88  Identities=17%  Similarity=0.089  Sum_probs=58.1

Q ss_pred             HHHhhcCCHHHHHHHHhhCC----CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC---chHHHHHHHHHhc
Q 007573          449 DILSRAGQLEKAWQITQGMP----FEA-DTGVWGSLLAACVINLNVELGELAAKKMRELDPQNS---AVYVMLSNLYAAA  520 (597)
Q Consensus       449 ~~~~~~g~~~~A~~~~~~~~----~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~  520 (597)
                      ....+.|++++|.+.|+.+.    ..| ....-..|+.++.+.|++++|...+++.++++|.++   -++...+-++..+
T Consensus        18 ~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~   97 (142)
T PF13512_consen   18 QEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQ   97 (142)
T ss_pred             HHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHH
Confidence            33446677777777776664    122 234556677888888888999999999999888873   3344445455555


Q ss_pred             CC---------------cHHHHHHHHHHHhC
Q 007573          521 GM---------------WRDVTRVRLLMKEQ  536 (597)
Q Consensus       521 g~---------------~~~A~~~~~~~~~~  536 (597)
                      ..               ..+|...|+.+++.
T Consensus        98 ~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~  128 (142)
T PF13512_consen   98 DEGSLQSFFRSDRDPTPARQAFRDFEQLVRR  128 (142)
T ss_pred             hhhHHhhhcccccCcHHHHHHHHHHHHHHHH
Confidence            44               56677777776654

>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus

Probab=96.46  E-value=0.32  Score=38.53  Aligned_cols=141  Identities=12%  Similarity=0.123  Sum_probs=84.7

Q ss_pred             HHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHH
Q 007573          380 FAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEK  459 (597)
Q Consensus       380 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~  459 (597)
                      ..-.|..++..++..+....   .+..-++.++--....-+-+-..++++.+-+.+.+              ..+|++..
T Consensus        12 ~ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDi--------------s~C~NlKr   74 (161)
T PF09205_consen   12 RILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDI--------------SKCGNLKR   74 (161)
T ss_dssp             HHHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-G--------------GG-S-THH
T ss_pred             HHHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhhcCc--------------hhhcchHH
Confidence            34468888888888887753   34445666655444444555555666655432221              22333333


Q ss_pred             HHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHhCCCc
Q 007573          460 AWQITQGMPFEADTGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRVRLLMKEQGVT  539 (597)
Q Consensus       460 A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  539 (597)
                      ....+-.+.  .+......-+.....+|.-++-.+++..+.+.+..+|..+..++.+|.+.|+..++.+++++.-++|++
T Consensus        75 Vi~C~~~~n--~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k  152 (161)
T PF09205_consen   75 VIECYAKRN--KLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK  152 (161)
T ss_dssp             HHHHHHHTT-----HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred             HHHHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence            333333322  234455666778888999999999999988766667889999999999999999999999999999874

Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=96.45  E-value=0.0039  Score=45.63  Aligned_cols=61  Identities=13%  Similarity=0.102  Sum_probs=38.2

Q ss_pred             HHHHHHHHHHhhcCCHHHHHHHHhhCC-----CC---CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 007573          442 EHYTCLVDILSRAGQLEKAWQITQGMP-----FE---AD-TGVWGSLLAACVINLNVELGELAAKKMREL  502 (597)
Q Consensus       442 ~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~---p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  502 (597)
                      .+|+.+...|.+.|++++|++.+++..     ..   |+ ..++..+...+...|++++|++.+++++++
T Consensus         6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i   75 (78)
T PF13424_consen    6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI   75 (78)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            345555666666666666666655432     12   22 346677777788888888888888887654

...

>KOG1258 consensus mRNA processing protein [RNA processing and modification]

Probab=96.43  E-value=1.3  Score=44.93  Aligned_cols=182  Identities=12%  Similarity=0.110  Sum_probs=119.0

Q ss_pred             cccHHHHHHHHHHhcCCHHHHHHHHhccCCC---ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHH
Q 007573          338 NVSVCNAVITMYSRCGGILDSELAFRQIHSP---NLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSA  414 (597)
Q Consensus       338 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~  414 (597)
                      +..+|...++.-.+.|+.+.+.-.|+...-|   -...|-..+.-.-..|+.+-|-.++....+-.++-.+.+-..-...
T Consensus       296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f  375 (577)
T KOG1258|consen  296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF  375 (577)
T ss_pred             HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH
Confidence            3556777778888888888888888877632   2334555555455558888888777766554333333333222233


Q ss_pred             HhccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHH---HHHhhCC-CCCCHHHHHH----HHHH-HH
Q 007573          415 CGHAGKVNESMDLFELMVKVYGIIPS-SEHYTCLVDILSRAGQLEKAW---QITQGMP-FEADTGVWGS----LLAA-CV  484 (597)
Q Consensus       415 ~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~---~~~~~~~-~~p~~~~~~~----l~~~-~~  484 (597)
                      +...|+...|..+++.+...  . |+ ...-..-+....+.|..+.+.   .++.... ..-+..+...    ..+- +.
T Consensus       376 ~e~~~n~~~A~~~lq~i~~e--~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~  452 (577)
T KOG1258|consen  376 EESNGNFDDAKVILQRIESE--Y-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYK  452 (577)
T ss_pred             HHhhccHHHHHHHHHHHHhh--C-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHH
Confidence            45678999999999999875  3 55 333333456677888888887   5554433 2222222222    2222 45


Q ss_pred             hcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCC
Q 007573          485 INLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGM  522 (597)
Q Consensus       485 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~  522 (597)
                      ..++.+.|..++.++.+..|++...|..+.+....++.
T Consensus       453 i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~  490 (577)
T KOG1258|consen  453 IREDADLARIILLEANDILPDCKVLYLELIRFELIQPS  490 (577)
T ss_pred             HhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCCc
Confidence            66889999999999999999998888888888777663

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.42  E-value=0.021  Score=51.56  Aligned_cols=83  Identities=12%  Similarity=0.091  Sum_probs=52.6

Q ss_pred             hcCCHHHHHHHHhhCC-------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---CchHHHHHHHHHhcCC
Q 007573          453 RAGQLEKAWQITQGMP-------FEADTGVWGSLLAACVINLNVELGELAAKKMRELDPQN---SAVYVMLSNLYAAAGM  522 (597)
Q Consensus       453 ~~g~~~~A~~~~~~~~-------~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~  522 (597)
                      ..|++.+|...|....       ..|+..-|  |+.++...|+++.|...|..+.+..|+.   |..+..|+.+..+.|+
T Consensus       153 ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yW--LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~  230 (262)
T COG1729         153 KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYW--LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGN  230 (262)
T ss_pred             HcCCHHHHHHHHHHHHHcCCCCcccchhHHH--HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcC
Confidence            4444555555554432       22333333  6667777777777777777777766554   5667777777777777


Q ss_pred             cHHHHHHHHHHHhCC
Q 007573          523 WRDVTRVRLLMKEQG  537 (597)
Q Consensus       523 ~~~A~~~~~~~~~~~  537 (597)
                      .++|..+|+++.++-
T Consensus       231 ~d~A~atl~qv~k~Y  245 (262)
T COG1729         231 TDEACATLQQVIKRY  245 (262)
T ss_pred             HHHHHHHHHHHHHHC
Confidence            777777777776543

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=96.41  E-value=0.92  Score=43.22  Aligned_cols=281  Identities=17%  Similarity=0.150  Sum_probs=123.9

Q ss_pred             HHHHHHHHHh--CCChhHHHHHHHhc---ccCCcchHHHHHHH--HHcCCChHHHHHHHhhcCCCCCCchH--HHHHHHH
Q 007573          177 YTAMLDGFMK--KGEVDKARALSDYM---SFKNVVSWTVMITG--YVKNERFCEARELFYRMPDYDKNVFV--VTAMITG  247 (597)
Q Consensus       177 ~~~li~~~~~--~g~~~~A~~~~~~m---~~~~~~~~~~ll~~--~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~l~~~  247 (597)
                      |..|-.++..  .|+-..|.++-.+.   ...|......++.+  -.-.|+++.|.+-|+.|.+. |....  ...|.-.
T Consensus        85 yqALStGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d-PEtRllGLRgLyle  163 (531)
T COG3898          85 YQALSTGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD-PETRLLGLRGLYLE  163 (531)
T ss_pred             HHHHhhhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC-hHHHHHhHHHHHHH
Confidence            4444444433  34444554444333   23344444444433  23457777777777777652 21111  1122222


Q ss_pred             HHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChhHHHHHHHHhHHCC-CCCCHHH--HHHHHHHHh---ccc
Q 007573          248 FCKVGMLENARLLFERIQP---KDCVSFNAMIAGYAQNGVAEEALRLFSGMIKMD-MQPDDAT--LVSVFTACS---ALQ  318 (597)
Q Consensus       248 ~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~--~~~ll~~~~---~~~  318 (597)
                      --+.|..+.|...-+..-.   .-...+...+...+..|+|+.|+++++.-.... +.++..-  -..++.+-+   -..
T Consensus       164 Aqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~lda  243 (531)
T COG3898         164 AQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDA  243 (531)
T ss_pred             HHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcC
Confidence            3356666666666655433   233466777777777888888887777655432 3333321  112222211   111


Q ss_pred             hhHHHHHHHHHHHHhCCCCcccH-HHHHHHHHHhcCCHHHHHHHHhccC--CCChhhHHHHHHHHHHcCCHHHHHHHHHH
Q 007573          319 LLNEGRQSHVLVIRNGFEANVSV-CNAVITMYSRCGGILDSELAFRQIH--SPNLVSWNTIIAAFAQHGHYEKALIFFSQ  395 (597)
Q Consensus       319 ~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~  395 (597)
                      +...+...-.+..+.  .|+..- -..-..++.+.|++.++-.+++.+-  +|.+..+...  .+.+.|+  .++.-+++
T Consensus       244 dp~~Ar~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~lY--~~ar~gd--ta~dRlkR  317 (531)
T COG3898         244 DPASARDDALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIALLY--VRARSGD--TALDRLKR  317 (531)
T ss_pred             ChHHHHHHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHHHHH--HHhcCCC--cHHHHHHH
Confidence            233333333222222  232211 1122344555555555555555554  3333332221  1122222  22222222


Q ss_pred             HHH-CCCCCC-hHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhh-cCCHHHHHHHHhhC
Q 007573          396 MGL-NGFDPD-GITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSR-AGQLEKAWQITQGM  467 (597)
Q Consensus       396 m~~-~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~g~~~~A~~~~~~~  467 (597)
                      ... ..++|| ..+...+..+-...|++..|..--+...   ...|....|..|.+.-.. .|+-.++...+.+.
T Consensus       318 a~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~---r~~pres~~lLlAdIeeAetGDqg~vR~wlAqa  389 (531)
T COG3898         318 AKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAA---REAPRESAYLLLADIEEAETGDQGKVRQWLAQA  389 (531)
T ss_pred             HHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHh---hhCchhhHHHHHHHHHhhccCchHHHHHHHHHH
Confidence            221 112333 3344444445555555555554444333   334555555555554432 25555555555443

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=96.41  E-value=0.23  Score=50.06  Aligned_cols=89  Identities=15%  Similarity=0.126  Sum_probs=51.3

Q ss_pred             cCCcchHHHHHHHHHcCCChHHHHHHHhhcCCCCCCchHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHH--------
Q 007573          202 FKNVVSWTVMITGYVKNERFCEARELFYRMPDYDKNVFVVTAMITGFCKVGMLENARLLFERIQPKDCVSFN--------  273 (597)
Q Consensus       202 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--------  273 (597)
                      ..+..+...+..-+.+...+..|-++|..+-+       ..+++++....+++.+|..+-++.++--...|-        
T Consensus       744 ~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD-------~ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE  816 (1081)
T KOG1538|consen  744 KAEREPLLLCATYLKKLDSPGLAAEIFLKMGD-------LKSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAE  816 (1081)
T ss_pred             hhhhhHHHHHHHHHhhccccchHHHHHHHhcc-------HHHHhhheeecccchHhHhhhhhCccccccccchHHHHhhh
Confidence            33445555555555566666667777766654       235666777777788877777777652222222        


Q ss_pred             -----HHHHHHHHcCChhHHHHHHHHhHH
Q 007573          274 -----AMIAGYAQNGVAEEALRLFSGMIK  297 (597)
Q Consensus       274 -----~li~~~~~~g~~~~A~~~~~~m~~  297 (597)
                           ..-.+|.+.|+..+|..+++++..
T Consensus       817 ~DrFeEAqkAfhkAGr~~EA~~vLeQLtn  845 (1081)
T KOG1538|consen  817 NDRFEEAQKAFHKAGRQREAVQVLEQLTN  845 (1081)
T ss_pred             hhhHHHHHHHHHHhcchHHHHHHHHHhhh
Confidence                 223345555555555555555543

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=96.38  E-value=0.35  Score=43.12  Aligned_cols=142  Identities=15%  Similarity=0.136  Sum_probs=77.1

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHCCCC-C-ChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChH-HHHHHHHH
Q 007573          374 NTIIAAFAQHGHYEKALIFFSQMGLNGFD-P-DGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSE-HYTCLVDI  450 (597)
Q Consensus       374 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~-~~~~l~~~  450 (597)
                      -.....+...|++.+|++.|+++...-.. | -......++.++.+.|+++.|...++..++.++-.|... .+-.++..
T Consensus         9 Y~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~   88 (203)
T PF13525_consen    9 YQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLS   88 (203)
T ss_dssp             HHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHH
Confidence            33455566778888888888887764211 1 133455566777777888888888887777655444421 11111111


Q ss_pred             HhhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc-----------------hHHHH
Q 007573          451 LSRAGQLEKAWQITQGMPFEADTGVWGSLLAACVINLNVELGELAAKKMRELDPQNSA-----------------VYVML  513 (597)
Q Consensus       451 ~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~-----------------~~~~l  513 (597)
                      +...  .....                   ......+...+|...++.+++.-|+++-                 .-..+
T Consensus        89 ~~~~--~~~~~-------------------~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~i  147 (203)
T PF13525_consen   89 YYKQ--IPGIL-------------------RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYI  147 (203)
T ss_dssp             HHHH--HHHHH--------------------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHh--Cccch-------------------hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1111  00000                   0011223345666666666666666531                 12456


Q ss_pred             HHHHHhcCCcHHHHHHHHHHHhC
Q 007573          514 SNLYAAAGMWRDVTRVRLLMKEQ  536 (597)
Q Consensus       514 ~~~~~~~g~~~~A~~~~~~~~~~  536 (597)
                      +..|.+.|.+..|..-++.+.+.
T Consensus       148 a~~Y~~~~~y~aA~~r~~~v~~~  170 (203)
T PF13525_consen  148 ARFYYKRGKYKAAIIRFQYVIEN  170 (203)
T ss_dssp             HHHHHCTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHcccHHHHHHHHHHHHHH
Confidence            88899999999999999998874

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=96.30  E-value=0.36  Score=49.19  Aligned_cols=186  Identities=13%  Similarity=0.068  Sum_probs=123.0

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCCh-----HHHHHHHHHHhc----cCcHHHHHHHHHHhHHhcCCCCChH
Q 007573          373 WNTIIAAFAQHGHYEKALIFFSQMGLNG-FDPDG-----ITFLSLLSACGH----AGKVNESMDLFELMVKVYGIIPSSE  442 (597)
Q Consensus       373 ~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~-----~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~p~~~  442 (597)
                      ...++....-.|+-+.+++.+.+..+.+ +.-..     ..|..++..+..    ....+.|.++++.+.+.+   |+..
T Consensus       191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~y---P~s~  267 (468)
T PF10300_consen  191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRY---PNSA  267 (468)
T ss_pred             HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhC---CCcH
Confidence            3445555666788888888887766532 11111     134444443332    457888999999998653   6655


Q ss_pred             HHHH-HHHHHhhcCCHHHHHHHHhhCCC------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHH-HHH
Q 007573          443 HYTC-LVDILSRAGQLEKAWQITQGMPF------EADTGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYV-MLS  514 (597)
Q Consensus       443 ~~~~-l~~~~~~~g~~~~A~~~~~~~~~------~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~-~l~  514 (597)
                      .|.. -...+...|++++|.+.|++...      +-....+--++..+....++++|...+.++.+.+.-....|. ..+
T Consensus       268 lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a  347 (468)
T PF10300_consen  268 LFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAA  347 (468)
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence            5443 35667788999999999997541      122345566777788899999999999999997776655554 456


Q ss_pred             HHHHhcCCc-------HHHHHHHHHHHhCCCccCCCeeEEEECCEEEEEEeCCCCCcchHHHHHHHHHHHHH
Q 007573          515 NLYAAAGMW-------RDVTRVRLLMKEQGVTKQCAYSWIEIGNKVHYFLGGDMSHPCIDKIHLELKRASVQ  579 (597)
Q Consensus       515 ~~~~~~g~~-------~~A~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~  579 (597)
                      -++...|+.       ++|.++++++.....+                 ..| ++-|....+.+..++...+
T Consensus       348 ~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~k-----------------~~g-k~lp~E~Fv~RK~~~~~~~  401 (468)
T PF10300_consen  348 ACLLMLGREEEAKEHKKEAEELFRKVPKLKQK-----------------KAG-KSLPLEKFVIRKAQKYEKQ  401 (468)
T ss_pred             HHHHhhccchhhhhhHHHHHHHHHHHHHHHhh-----------------hcc-CCCChHHHHHHHHHHHHhc
Confidence            678888988       8888888887653221                 111 3456666666666665555

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PRK11906 transcriptional regulator; Provisional

Probab=96.24  E-value=0.095  Score=51.33  Aligned_cols=119  Identities=8%  Similarity=0.045  Sum_probs=89.6

Q ss_pred             cHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhh---------cCCHHHHHHHHhhCC-C-CCCHHHHHHHHHHHHhcC
Q 007573          420 KVNESMDLFELMVKVYGIIPS-SEHYTCLVDILSR---------AGQLEKAWQITQGMP-F-EADTGVWGSLLAACVINL  487 (597)
Q Consensus       420 ~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~---------~g~~~~A~~~~~~~~-~-~p~~~~~~~l~~~~~~~g  487 (597)
                      ..+.|..+|.+......+.|+ ...|..+...+..         .....+|.++.++.. . +.|+.....++.+....+
T Consensus       273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~  352 (458)
T PRK11906        273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSG  352 (458)
T ss_pred             HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhc
Confidence            456788888888754466676 5556555544432         223445666665544 3 446777777777777888


Q ss_pred             CHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHhCCC
Q 007573          488 NVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRVRLLMKEQGV  538 (597)
Q Consensus       488 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  538 (597)
                      +++.|...|+++..++|+...++...++.+.-.|+.++|.+.+++..+..+
T Consensus       353 ~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP  403 (458)
T PRK11906        353 QAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEP  403 (458)
T ss_pred             chhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCc
Confidence            899999999999999999999999999999999999999999999766443

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=96.21  E-value=0.89  Score=40.99  Aligned_cols=58  Identities=10%  Similarity=0.069  Sum_probs=46.8

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhcCCCC---CchHHHHHHHHHhcCCcHHHHHHHHHHHhC
Q 007573          479 LLAACVINLNVELGELAAKKMRELDPQN---SAVYVMLSNLYAAAGMWRDVTRVRLLMKEQ  536 (597)
Q Consensus       479 l~~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  536 (597)
                      +..-|.+.|.+..|..-++++++.-|+.   ...+..+.++|...|..++|.+.-+-+...
T Consensus       173 IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N  233 (254)
T COG4105         173 IARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGAN  233 (254)
T ss_pred             HHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence            4566889999999999999999986665   455667788999999999999987665543

>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase

Probab=96.12  E-value=0.093  Score=42.23  Aligned_cols=97  Identities=12%  Similarity=0.228  Sum_probs=61.4

Q ss_pred             ccHHHHHHHHHHhcCCHHHHHHHHhccCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhcc
Q 007573          339 VSVCNAVITMYSRCGGILDSELAFRQIHSPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHA  418 (597)
Q Consensus       339 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~  418 (597)
                      ..++..++.++++.|+++....+++..-..++.       +-...+.         --......|+..+..+++.+|+..
T Consensus         2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~-------~~~~~~~---------~~~~spl~Pt~~lL~AIv~sf~~n   65 (126)
T PF12921_consen    2 EELLCNIIYALGRSGQLDSIKSYIKSVWGIDVN-------GKKKEGD---------YPPSSPLYPTSRLLIAIVHSFGYN   65 (126)
T ss_pred             hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCC-------CccccCc---------cCCCCCCCCCHHHHHHHHHHHHhc
Confidence            345666666677777766666666554321111       0000000         111234678888888888888888


Q ss_pred             CcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHH
Q 007573          419 GKVNESMDLFELMVKVYGIIPSSEHYTCLVDIL  451 (597)
Q Consensus       419 g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~  451 (597)
                      |++..|.++.+...+.++++.+...|..|+.-.
T Consensus        66 ~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~   98 (126)
T PF12921_consen   66 GDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA   98 (126)
T ss_pred             ccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence            888888888888888888777777777776543

The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.04  E-value=2.4  Score=44.36  Aligned_cols=96  Identities=13%  Similarity=0.184  Sum_probs=57.4

Q ss_pred             HHcCCChHHHHHHHccCCC--C---ChhhHHHHHHHHHcCCChHHHHHHHccCCCCCchhHHHHHHHHHhCCChhHHHHH
Q 007573          122 CIDNDRIDDAFDYFQAMPE--R---NTATYNAMISGFLKHGRLEEATRLFEQMPRRNVISYTAMLDGFMKKGEVDKARAL  196 (597)
Q Consensus       122 ~~~~~~~~~A~~~~~~~~~--~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~  196 (597)
                      +.+.+.+++|+...+....  +   -..++..++..+.-.|++++|-...-.|...+..-|...+..+...++......+
T Consensus       366 ll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~Ia~~  445 (846)
T KOG2066|consen  366 LLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDIAPY  445 (846)
T ss_pred             HHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccchhhcc
Confidence            3445566666666655542  1   2245666777777777777777777777777777777777777776666544433


Q ss_pred             HHhccc-CCcchHHHHHHHHHc
Q 007573          197 SDYMSF-KNVVSWTVMITGYVK  217 (597)
Q Consensus       197 ~~~m~~-~~~~~~~~ll~~~~~  217 (597)
                      +-.-.. .+...|..++..+..
T Consensus       446 lPt~~~rL~p~vYemvLve~L~  467 (846)
T KOG2066|consen  446 LPTGPPRLKPLVYEMVLVEFLA  467 (846)
T ss_pred             CCCCCcccCchHHHHHHHHHHH
Confidence            221111 234556666666655

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=96.04  E-value=0.048  Score=53.22  Aligned_cols=62  Identities=8%  Similarity=-0.040  Sum_probs=46.1

Q ss_pred             hHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 007573          441 SEHYTCLVDILSRAGQLEKAWQITQGMP-FEADTG----VWGSLLAACVINLNVELGELAAKKMREL  502 (597)
Q Consensus       441 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~----~~~~l~~~~~~~g~~~~a~~~~~~~~~~  502 (597)
                      ...+..+..+|...|++++|...|++.. ..|+..    +|..+..+|...|+.++|+..+++++++
T Consensus        75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            5667777777777788888877777643 566532    4777888888888888888888888876

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=96.02  E-value=1.6  Score=42.79  Aligned_cols=150  Identities=13%  Similarity=0.017  Sum_probs=85.3

Q ss_pred             CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC---ChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC--hH
Q 007573          368 PNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDP---DGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPS--SE  442 (597)
Q Consensus       368 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~--~~  442 (597)
                      ....+|..++..+.+.|+++.|...+.++...+..+   .+.....-...+...|+..+|...++..... .+..+  ..
T Consensus       144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~-~~~~~~~~~  222 (352)
T PF02259_consen  144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC-RLSKNIDSI  222 (352)
T ss_pred             HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH-Hhhhccccc
Confidence            445578888888999999999999888887643221   3344444556667778888888888877762 11111  11


Q ss_pred             HHHHHHHHHhhcCCHHHHHHHH-hhCCCCCCHHHHHHHHHHHHhc------CCHHHHHHHHHHHHhcCCCCCchHHHHHH
Q 007573          443 HYTCLVDILSRAGQLEKAWQIT-QGMPFEADTGVWGSLLAACVIN------LNVELGELAAKKMRELDPQNSAVYVMLSN  515 (597)
Q Consensus       443 ~~~~l~~~~~~~g~~~~A~~~~-~~~~~~p~~~~~~~l~~~~~~~------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~  515 (597)
                      ....+...+..  ..+.....- .......-..++..+..-+...      ++.+.+...|.++.+..|.....+..++.
T Consensus       223 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~  300 (352)
T PF02259_consen  223 SNAELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWAL  300 (352)
T ss_pred             cHHHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHH
Confidence            11111111000  000000000 0000000122333334444444      78899999999999999998888888877


Q ss_pred             HHHhc
Q 007573          516 LYAAA  520 (597)
Q Consensus       516 ~~~~~  520 (597)
                      .+.+.
T Consensus       301 ~~~~~  305 (352)
T PF02259_consen  301 FNDKL  305 (352)
T ss_pred             HHHHH
Confidence            76553

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=95.90  E-value=0.094  Score=44.73  Aligned_cols=90  Identities=16%  Similarity=0.057  Sum_probs=73.1

Q ss_pred             HHHhhcCCHHHHHHHHhhCC-CCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcC
Q 007573          449 DILSRAGQLEKAWQITQGMP-FEAD------TGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAG  521 (597)
Q Consensus       449 ~~~~~~g~~~~A~~~~~~~~-~~p~------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g  521 (597)
                      +-+...|++++|..-|.... .-|.      ...|..-..+..+.+.++.|+.-..++++++|....++..-+.+|.+..
T Consensus       103 N~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~e  182 (271)
T KOG4234|consen  103 NELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKME  182 (271)
T ss_pred             HHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhh
Confidence            44667888888888776654 2222      3345555667889999999999999999999999888888899999999


Q ss_pred             CcHHHHHHHHHHHhCCC
Q 007573          522 MWRDVTRVRLLMKEQGV  538 (597)
Q Consensus       522 ~~~~A~~~~~~~~~~~~  538 (597)
                      ++++|++-|+++.+..+
T Consensus       183 k~eealeDyKki~E~dP  199 (271)
T KOG4234|consen  183 KYEEALEDYKKILESDP  199 (271)
T ss_pred             hHHHHHHHHHHHHHhCc
Confidence            99999999999988654

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.88  E-value=0.22  Score=46.14  Aligned_cols=111  Identities=8%  Similarity=0.055  Sum_probs=52.7

Q ss_pred             CCHHHHHHHHhccC---CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHH----HHHHHHhccCcHHHHH
Q 007573          353 GGILDSELAFRQIH---SPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFL----SLLSACGHAGKVNESM  425 (597)
Q Consensus       353 g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~----~ll~~~~~~g~~~~a~  425 (597)
                      |+..+|-..++++.   +.|..+++.-=.+|...|+.+.-...+++.... ..||...|.    .+.-++...|-+++|.
T Consensus       117 g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~dAE  195 (491)
T KOG2610|consen  117 GKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDDAE  195 (491)
T ss_pred             ccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchhHH
Confidence            44444444444443   445555555555555566655555555555432 133332221    1112334455566665


Q ss_pred             HHHHHhHHhcCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHhhC
Q 007573          426 DLFELMVKVYGIIP-SSEHYTCLVDILSRAGQLEKAWQITQGM  467 (597)
Q Consensus       426 ~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~  467 (597)
                      +.-++..+   +.| |.-.-.+....+.-.|++.++.++..+-
T Consensus       196 k~A~ralq---iN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~t  235 (491)
T KOG2610|consen  196 KQADRALQ---INRFDCWASHAKAHVLEMNGRHKEGKEFMYKT  235 (491)
T ss_pred             HHHHhhcc---CCCcchHHHHHHHHHHHhcchhhhHHHHHHhc
Confidence            55544432   222 2333444555555556666666555543

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=95.87  E-value=1.3  Score=40.03  Aligned_cols=197  Identities=17%  Similarity=0.129  Sum_probs=121.3

Q ss_pred             ccHHHHHHHHHHhcCCHHHHHHHHhccC-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHH
Q 007573          339 VSVCNAVITMYSRCGGILDSELAFRQIH-----SPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLS  413 (597)
Q Consensus       339 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~  413 (597)
                      ..........+...+++..+...+....     ......+......+...+++..+.+.+.........+. ........
T Consensus        59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  137 (291)
T COG0457          59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD-LAEALLAL  137 (291)
T ss_pred             hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc-hHHHHHHH
Confidence            3445555556666666666666555442     23344555556666666777777777777765432221 12222222


Q ss_pred             -HHhccCcHHHHHHHHHHhHHhcCC--CCChHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCCC--HHHHHHHHHHHHhcC
Q 007573          414 -ACGHAGKVNESMDLFELMVKVYGI--IPSSEHYTCLVDILSRAGQLEKAWQITQGMP-FEAD--TGVWGSLLAACVINL  487 (597)
Q Consensus       414 -~~~~~g~~~~a~~~~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~--~~~~~~l~~~~~~~g  487 (597)
                       .+...|+.+.+...+...... ..  ......+......+...++.++|...+.+.. ..++  ...+..+...+...+
T Consensus       138 ~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (291)
T COG0457         138 GALYELGDYEEALELYEKALEL-DPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLG  216 (291)
T ss_pred             HHHHHcCCHHHHHHHHHHHHhc-CCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcc
Confidence             566777888888877776431 11  1123334444444666778888887777655 2233  556777777777777


Q ss_pred             CHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHhCC
Q 007573          488 NVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRVRLLMKEQG  537 (597)
Q Consensus       488 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  537 (597)
                      +++.|...+..+....|.....+..+...+...|.++++...+.......
T Consensus       217 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (291)
T COG0457         217 KYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELD  266 (291)
T ss_pred             cHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            88888888888888877755556666666666677888887777766543

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=95.84  E-value=0.53  Score=40.92  Aligned_cols=164  Identities=16%  Similarity=0.135  Sum_probs=95.2

Q ss_pred             CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHH
Q 007573          367 SPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPD-GITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYT  445 (597)
Q Consensus       367 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~  445 (597)
                      +.-+.+||-+.--+...|+++.|.+.|+...+..  |. ..++..-.-++.-.|++.-|.+-+-..-+...-.|-...|-
T Consensus        96 P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELD--p~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWL  173 (297)
T COG4785          96 PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD--PTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWL  173 (297)
T ss_pred             CCcHHHHHHHHHHHHhcccchHHHHHhhhHhccC--CcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHH
Confidence            3345678888888888899999999998887653  32 23333333345567888888776655544312222222222


Q ss_pred             HHHHHHhhcCCHHHHHHHH-hhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-------CchHHHHHHHH
Q 007573          446 CLVDILSRAGQLEKAWQIT-QGMPFEADTGVWGSLLAACVINLNVELGELAAKKMRELDPQN-------SAVYVMLSNLY  517 (597)
Q Consensus       446 ~l~~~~~~~g~~~~A~~~~-~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~-------~~~~~~l~~~~  517 (597)
                      .+.   .+.-++.+|..-+ ++.. +-|..-|...+-.+.- |... .+.+++++.+-..++       ..+|..|+.-|
T Consensus       174 Yl~---E~k~dP~~A~tnL~qR~~-~~d~e~WG~~iV~~yL-gkiS-~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~  247 (297)
T COG4785         174 YLN---EQKLDPKQAKTNLKQRAE-KSDKEQWGWNIVEFYL-GKIS-EETLMERLKADATDNTSLAEHLTETYFYLGKYY  247 (297)
T ss_pred             HHH---HhhCCHHHHHHHHHHHHH-hccHhhhhHHHHHHHH-hhcc-HHHHHHHHHhhccchHHHHHHHHHHHHHHHHHH
Confidence            222   2334666776544 3333 4455566555544322 1111 112233333222222       46788999999


Q ss_pred             HhcCCcHHHHHHHHHHHhCCC
Q 007573          518 AAAGMWRDVTRVRLLMKEQGV  538 (597)
Q Consensus       518 ~~~g~~~~A~~~~~~~~~~~~  538 (597)
                      ...|+.++|..+|+.....++
T Consensus       248 l~~G~~~~A~~LfKLaiannV  268 (297)
T COG4785         248 LSLGDLDEATALFKLAVANNV  268 (297)
T ss_pred             hccccHHHHHHHHHHHHHHhH
Confidence            999999999999998887664

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=95.77  E-value=0.88  Score=41.84  Aligned_cols=50  Identities=14%  Similarity=0.127  Sum_probs=22.9

Q ss_pred             HHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHh
Q 007573          381 AQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFELM  431 (597)
Q Consensus       381 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~  431 (597)
                      ...|++.+|..+|+...... +-+...-..+..++...|+.+.|..++..+
T Consensus       145 ~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~l  194 (304)
T COG3118         145 IEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAAL  194 (304)
T ss_pred             hhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhC
Confidence            34455555555555544432 112233334444555555555555555443

>PRK09687 putative lyase; Provisional

Probab=95.73  E-value=1.8  Score=40.62  Aligned_cols=136  Identities=13%  Similarity=0.066  Sum_probs=58.9

Q ss_pred             CCchhHHHHHHHHHhCCChhHHHHHHHhcccCCcchHHHHHHHHHcCC-ChHHHHHHHhhcCCCCCCchHHHHHHHHHHh
Q 007573          172 RNVISYTAMLDGFMKKGEVDKARALSDYMSFKNVVSWTVMITGYVKNE-RFCEARELFYRMPDYDKNVFVVTAMITGFCK  250 (597)
Q Consensus       172 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~  250 (597)
                      ++..+-...+.++.+.|+.+..-.+..-+..+|...-...+.++.+.+ +-..+...+..+.. +++..+....+.++++
T Consensus       140 ~~~~VR~~a~~aLg~~~~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~-D~~~~VR~~A~~aLg~  218 (280)
T PRK09687        140 KSTNVRFAVAFALSVINDEAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ-DKNEEIRIEAIIGLAL  218 (280)
T ss_pred             CCHHHHHHHHHHHhccCCHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc-CCChHHHHHHHHHHHc
Confidence            344444445555555554332222233333344433333444444332 12233333333321 2455555555666666


Q ss_pred             cCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHH
Q 007573          251 VGMLENARLLFERIQPKDCVSFNAMIAGYAQNGVAEEALRLFSGMIKMDMQPDDATLVSVFTA  313 (597)
Q Consensus       251 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~  313 (597)
                      .|+.+-...+.+.+..++  .....+.++...|.. +|+..+.++.+.  .||...-...+.+
T Consensus       219 ~~~~~av~~Li~~L~~~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a  276 (280)
T PRK09687        219 RKDKRVLSVLIKELKKGT--VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDK  276 (280)
T ss_pred             cCChhHHHHHHHHHcCCc--hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHH
Confidence            665333233333333333  223455556666653 466666665543  2344443333333

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=95.71  E-value=0.024  Score=33.42  Aligned_cols=32  Identities=22%  Similarity=0.073  Sum_probs=25.9

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 007573          474 GVWGSLLAACVINLNVELGELAAKKMRELDPQ  505 (597)
Q Consensus       474 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~  505 (597)
                      .+|..++..+...|++++|+..++++++++|+
T Consensus         2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~   33 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD   33 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence            46777888888888888888888888888886

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=95.68  E-value=0.13  Score=43.12  Aligned_cols=71  Identities=24%  Similarity=0.343  Sum_probs=43.2

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHH----hcCCCCChHHH
Q 007573          373 WNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMVK----VYGIIPSSEHY  444 (597)
Q Consensus       373 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~----~~~~~p~~~~~  444 (597)
                      ...++..+...|++++|+.+.+++.... +-|...+..++.++...|+..+|.++|+.+.+    ..|+.|++.+-
T Consensus        65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~  139 (146)
T PF03704_consen   65 LERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR  139 (146)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence            4445566667777777777777777643 44566777777777778887777777776543    34777776553

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=95.68  E-value=1.6  Score=43.30  Aligned_cols=97  Identities=11%  Similarity=0.127  Sum_probs=48.4

Q ss_pred             HHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHH--HHHHHHHHHHhc
Q 007573          411 LLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMP--FEADTG--VWGSLLAACVIN  486 (597)
Q Consensus       411 ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~--~~~~l~~~~~~~  486 (597)
                      +..++.+.|+.++|.+.++++.+.+.......+...|+..|...+.+.++..++.+-.  .-|...  .|+..+-.....
T Consensus       265 LAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaRav  344 (539)
T PF04184_consen  265 LAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKARAV  344 (539)
T ss_pred             HHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHHhh
Confidence            4444455566666666666555542221223344455566666666666666555543  112222  333333222222


Q ss_pred             CC---------------HHHHHHHHHHHHhcCCCCC
Q 007573          487 LN---------------VELGELAAKKMRELDPQNS  507 (597)
Q Consensus       487 g~---------------~~~a~~~~~~~~~~~p~~~  507 (597)
                      ++               -..|.+.+.++.+.+|..|
T Consensus       345 ~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp  380 (539)
T PF04184_consen  345 GDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVP  380 (539)
T ss_pred             ccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCc
Confidence            21               1346788888888887643

The molecular function of this protein is uncertain.

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=95.64  E-value=0.69  Score=42.47  Aligned_cols=122  Identities=16%  Similarity=0.116  Sum_probs=88.2

Q ss_pred             HHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCCCCCCHHHHHH---HHHHHHhcCCH
Q 007573          413 SACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMPFEADTGVWGS---LLAACVINLNV  489 (597)
Q Consensus       413 ~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~---l~~~~~~~g~~  489 (597)
                      ......|+..+|...|+.....  .+-+...-..++..|...|+.++|..++..++.+-....+..   -+....+..+.
T Consensus       142 ~~~~~~e~~~~a~~~~~~al~~--~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~  219 (304)
T COG3118         142 KELIEAEDFGEAAPLLKQALQA--APENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAAT  219 (304)
T ss_pred             hhhhhccchhhHHHHHHHHHHh--CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcC
Confidence            4456789999999999988764  223356677889999999999999999999984333333333   23333333333


Q ss_pred             HHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHhCC
Q 007573          490 ELGELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRVRLLMKEQG  537 (597)
Q Consensus       490 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  537 (597)
                      .+... ++.-...+|+|...-..++..|...|+.++|.+.+=.+..+.
T Consensus       220 ~~~~~-l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d  266 (304)
T COG3118         220 PEIQD-LQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRD  266 (304)
T ss_pred             CCHHH-HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence            33322 333446799999999999999999999999999887777654

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=95.60  E-value=0.038  Score=32.42  Aligned_cols=33  Identities=33%  Similarity=0.188  Sum_probs=24.6

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 007573          474 GVWGSLLAACVINLNVELGELAAKKMRELDPQN  506 (597)
Q Consensus       474 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~  506 (597)
                      ..|..+...+...|++++|++.++++++++|++
T Consensus         2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence            356667777888888888888888888888764

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=95.56  E-value=0.34  Score=48.61  Aligned_cols=48  Identities=15%  Similarity=0.092  Sum_probs=25.1

Q ss_pred             HHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChhHHHHHHHHh
Q 007573          246 TGFCKVGMLENARLLFERIQPKDCVSFNAMIAGYAQNGVAEEALRLFSGM  295 (597)
Q Consensus       246 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m  295 (597)
                      ....++|+++.|.++.+++.  +...|..|.....++|+++-|...|.+.
T Consensus       326 eLAl~lg~L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~  373 (443)
T PF04053_consen  326 ELALQLGNLDIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKA  373 (443)
T ss_dssp             HHHHHCT-HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHC
T ss_pred             HHHHhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence            34445555555555544433  3445555666666666666665555543

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.52  E-value=1.5  Score=38.98  Aligned_cols=86  Identities=12%  Similarity=0.101  Sum_probs=47.3

Q ss_pred             HHHHHHHHhhcCCHHHHHHHHhhCC-------CCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCCCchHH
Q 007573          444 YTCLVDILSRAGQLEKAWQITQGMP-------FEADT-GVWGSLLAACVINLNVELGELAAKKMREL----DPQNSAVYV  511 (597)
Q Consensus       444 ~~~l~~~~~~~g~~~~A~~~~~~~~-------~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~p~~~~~~~  511 (597)
                      +..+...|.+..++++|-..+.+-.       .-|+. ..+.+.+-.+....|+..|.+.++.--++    +|++..+..
T Consensus       153 ~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~le  232 (308)
T KOG1585|consen  153 YGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLE  232 (308)
T ss_pred             HHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHH
Confidence            3444455666666666655544322       11222 23444445555566777777777765443    355566666


Q ss_pred             HHHHHHHhcCCcHHHHHHH
Q 007573          512 MLSNLYAAAGMWRDVTRVR  530 (597)
Q Consensus       512 ~l~~~~~~~g~~~~A~~~~  530 (597)
                      .|+.+| ..|+.+++.++.
T Consensus       233 nLL~ay-d~gD~E~~~kvl  250 (308)
T KOG1585|consen  233 NLLTAY-DEGDIEEIKKVL  250 (308)
T ss_pred             HHHHHh-ccCCHHHHHHHH
Confidence            666665 446666655543

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.52  E-value=3.8  Score=42.89  Aligned_cols=150  Identities=16%  Similarity=0.184  Sum_probs=96.3

Q ss_pred             HHHHHHHhcCChHHHHHHHhhcCC--C---CcchHHHHHHHHHhCCChhHHHHHHhhCCCCCcchHHHHHHHHHcCCChH
Q 007573           55 AKISALSRAGKISAARQLFDQMTT--K---DVITWNAIITGYWQNGFLQESKNLFQSMPVKNIVSWNCMIAGCIDNDRID  129 (597)
Q Consensus        55 ~l~~~~~~~g~~~~A~~~~~~~~~--~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~  129 (597)
                      --++.+.+.+.+++|+..-+....  +   -...+...|..+...|++++|-+..-.|...+..-|..-+..++..+...
T Consensus       361 Dhi~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~  440 (846)
T KOG2066|consen  361 DHIDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLT  440 (846)
T ss_pred             hhHHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccc
Confidence            347778889999999998887655  2   12357888899999999999999999999888888888888888777665


Q ss_pred             HHHHHHccCCC-CChhhHHHHHHHHHcCCChHHHHHHHccCCC--------------------CCchhHHHHHHHHHhCC
Q 007573          130 DAFDYFQAMPE-RNTATYNAMISGFLKHGRLEEATRLFEQMPR--------------------RNVISYTAMLDGFMKKG  188 (597)
Q Consensus       130 ~A~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------------------~~~~~~~~li~~~~~~g  188 (597)
                      ....++=.-.+ -++.+|..++..+.. .+...-.++..+.+.                    .+...-..|+..|...+
T Consensus       441 ~Ia~~lPt~~~rL~p~vYemvLve~L~-~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~Se~~~L~e~La~LYl~d~  519 (846)
T KOG2066|consen  441 DIAPYLPTGPPRLKPLVYEMVLVEFLA-SDVKGFLELIKEWPGHLYSVLTIISATEPQIKQNSESTALLEVLAHLYLYDN  519 (846)
T ss_pred             hhhccCCCCCcccCchHHHHHHHHHHH-HHHHHHHHHHHhCChhhhhhhHHHhhcchHHHhhccchhHHHHHHHHHHHcc
Confidence            44333322222 356778877777766 333333333332221                    11122333556666666


Q ss_pred             ChhHHHHHHHhcccCCc
Q 007573          189 EVDKARALSDYMSFKNV  205 (597)
Q Consensus       189 ~~~~A~~~~~~m~~~~~  205 (597)
                      ++..|+.++-....+++
T Consensus       520 ~Y~~Al~~ylklk~~~v  536 (846)
T KOG2066|consen  520 KYEKALPIYLKLQDKDV  536 (846)
T ss_pred             ChHHHHHHHHhccChHH
Confidence            66666666555544433

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=95.46  E-value=3.3  Score=42.30  Aligned_cols=155  Identities=19%  Similarity=0.082  Sum_probs=98.1

Q ss_pred             hHHHHHHHHHhCCChhHHHHHHHhcccC-Cc---------chHHHHHHHHHc----CCChHHHHHHHhhcCCCCCCchHH
Q 007573          176 SYTAMLDGFMKKGEVDKARALSDYMSFK-NV---------VSWTVMITGYVK----NERFCEARELFYRMPDYDKNVFVV  241 (597)
Q Consensus       176 ~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~---------~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~  241 (597)
                      ....+++...-.|+-+.+++++....+. +.         -.|...+..++.    ....+.|.+++..+.+.-|+...|
T Consensus       190 ~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lf  269 (468)
T PF10300_consen  190 KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALF  269 (468)
T ss_pred             HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHH
Confidence            3455666666678888888877776332 22         234444433332    456778888888888877777666


Q ss_pred             HHH-HHHHHhcCCHHHHHHHHhhcCCC-------ChhHHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHH
Q 007573          242 TAM-ITGFCKVGMLENARLLFERIQPK-------DCVSFNAMIAGYAQNGVAEEALRLFSGMIKMDMQPDDATLVSVFTA  313 (597)
Q Consensus       242 ~~l-~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~  313 (597)
                      ... .+.+...|++++|++.|++....       ....+--+.-.+.-..+|++|...|..+.+.. ..+..+|..+..+
T Consensus       270 l~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a~  348 (468)
T PF10300_consen  270 LFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAAA  348 (468)
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHHH
Confidence            443 46667788899999888865431       22344455666777888899988888888754 4455555555544


Q ss_pred             Hh-ccchh-------HHHHHHHHHHH
Q 007573          314 CS-ALQLL-------NEGRQSHVLVI  331 (597)
Q Consensus       314 ~~-~~~~~-------~~a~~~~~~~~  331 (597)
                      |. ..++.       ++|..++.++.
T Consensus       349 c~~~l~~~~~~~~~~~~a~~l~~~vp  374 (468)
T PF10300_consen  349 CLLMLGREEEAKEHKKEAEELFRKVP  374 (468)
T ss_pred             HHHhhccchhhhhhHHHHHHHHHHHH
Confidence            42 34444       56666655543

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=95.43  E-value=2  Score=41.63  Aligned_cols=163  Identities=10%  Similarity=0.025  Sum_probs=102.8

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHCC---CCCChHHHHHHHHHHhc---cCcHHHHHHHHHHhHHhcCCCCChHHHHHH
Q 007573          374 NTIIAAFAQHGHYEKALIFFSQMGLNG---FDPDGITFLSLLSACGH---AGKVNESMDLFELMVKVYGIIPSSEHYTCL  447 (597)
Q Consensus       374 ~~li~~~~~~g~~~~A~~~~~~m~~~g---~~p~~~~~~~ll~~~~~---~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l  447 (597)
                      ..++-+|....+++..+++.+.+....   +.-....--...-++.+   .|+.++|.+++..+... .-.+++++|..+
T Consensus       145 ~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~-~~~~~~d~~gL~  223 (374)
T PF13281_consen  145 INLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLES-DENPDPDTLGLL  223 (374)
T ss_pred             HHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhc-cCCCChHHHHHH
Confidence            345557888999999999999998642   11112222233345556   89999999999985554 667788899888


Q ss_pred             HHHHhh---------cCCHHHHHHHHhhC-CCCCCHHHHHHHHHHHHhcCC-H---HHHHHHH----HHHHhcC---C-C
Q 007573          448 VDILSR---------AGQLEKAWQITQGM-PFEADTGVWGSLLAACVINLN-V---ELGELAA----KKMRELD---P-Q  505 (597)
Q Consensus       448 ~~~~~~---------~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~-~---~~a~~~~----~~~~~~~---p-~  505 (597)
                      +..|..         ...+++|...|.+. ..+|+...--.++......|. +   .+..++.    ..+.+.+   + .
T Consensus       224 GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~  303 (374)
T PF13281_consen  224 GRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQ  303 (374)
T ss_pred             HHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccc
Confidence            877742         22477888888764 355664432222222333332 1   1222222    1111221   1 2


Q ss_pred             CCchHHHHHHHHHhcCCcHHHHHHHHHHHhCC
Q 007573          506 NSAVYVMLSNLYAAAGMWRDVTRVRLLMKEQG  537 (597)
Q Consensus       506 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  537 (597)
                      +-..+..++.+..-.|+.++|.+..++|....
T Consensus       304 dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~  335 (374)
T PF13281_consen  304 DYWDVATLLEASVLAGDYEKAIQAAEKAFKLK  335 (374)
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Confidence            35556788999999999999999999998653

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.31  E-value=0.18  Score=45.65  Aligned_cols=96  Identities=19%  Similarity=0.162  Sum_probs=55.2

Q ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC--CChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHH
Q 007573          372 SWNTIIAAFAQHGHYEKALIFFSQMGLNGFD--PDGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPS-SEHYTCLV  448 (597)
Q Consensus       372 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~  448 (597)
                      .|+.-+.. .+.|++.+|...|...++....  -....+..|..++...|++++|..+|..+.+.++-.|. ++.+-.|.
T Consensus       144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg  222 (262)
T COG1729         144 LYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG  222 (262)
T ss_pred             HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence            35554443 3456677777777777764211  01234555667777777777777777777666554444 35555555


Q ss_pred             HHHhhcCCHHHHHHHHhhCC
Q 007573          449 DILSRAGQLEKAWQITQGMP  468 (597)
Q Consensus       449 ~~~~~~g~~~~A~~~~~~~~  468 (597)
                      ....+.|+.++|...++++.
T Consensus       223 ~~~~~l~~~d~A~atl~qv~  242 (262)
T COG1729         223 VSLGRLGNTDEACATLQQVI  242 (262)
T ss_pred             HHHHHhcCHHHHHHHHHHHH
Confidence            55555555555555555443

>KOG1258 consensus mRNA processing protein [RNA processing and modification]

Probab=95.24  E-value=4  Score=41.47  Aligned_cols=366  Identities=13%  Similarity=0.059  Sum_probs=185.1

Q ss_pred             CCcchHHHHHHHHHhcCChHHHHHHHhhcCC--CCcc-hHHHHHHHHHhCCChhHHHHHHhhCCCC---CcchHHHHHHH
Q 007573           48 QYVFVNNAKISALSRAGKISAARQLFDQMTT--KDVI-TWNAIITGYWQNGFLQESKNLFQSMPVK---NIVSWNCMIAG  121 (597)
Q Consensus        48 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~  121 (597)
                      -+...|..||.---.....+.++.+++.+..  |..+ -|-....-=.+-|..+.+..+|++..+-   .+..|...+..
T Consensus        43 ~~f~~wt~li~~~~~~~~~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f  122 (577)
T KOG1258|consen   43 LDFDAWTTLIQENDSIEDVDALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLAF  122 (577)
T ss_pred             hcccchHHHHhccCchhHHHHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence            4445666666655555556777777777765  5444 2444444456667778888888877643   55556555554


Q ss_pred             HH-cCCChHHHHHHHccCC------CCChhhHHHHHHHHHcCCChHHHHHHHccCCCCCchhHHHHHHHHHh---C----
Q 007573          122 CI-DNDRIDDAFDYFQAMP------ERNTATYNAMISGFLKHGRLEEATRLFEQMPRRNVISYTAMLDGFMK---K----  187 (597)
Q Consensus       122 ~~-~~~~~~~A~~~~~~~~------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~---~----  187 (597)
                      +. ..|+.+.....|++..      -.+...|...|..-..++++.....+++++.+-....++..-.-|.+   .    
T Consensus       123 ~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l~~~~~~  202 (577)
T KOG1258|consen  123 LKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHFDRFKQLLNQNEEK  202 (577)
T ss_pred             HhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhcCChh
Confidence            43 4456666666666665      12445666777777777777777777777765222222222221111   1    


Q ss_pred             --CChhHHHHHH-----------------------HhcccCCc---chHHHHH-------HHHHcCCChHHHHHHHhhcC
Q 007573          188 --GEVDKARALS-----------------------DYMSFKNV---VSWTVMI-------TGYVKNERFCEARELFYRMP  232 (597)
Q Consensus       188 --g~~~~A~~~~-----------------------~~m~~~~~---~~~~~ll-------~~~~~~g~~~~a~~~~~~~~  232 (597)
                        -..+++.++-                       +....|..   ..-+.+.       ..+.......+....++...
T Consensus       203 ~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~I  282 (577)
T KOG1258|consen  203 ILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGI  282 (577)
T ss_pred             hhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhc
Confidence              1112211111                       11111110   0111111       11222222233333333332


Q ss_pred             C-----CCC----CchHHHHHHHHHHhcCCHHHHHHHHhhcCCC---ChhHHHHHHHHHHHcCChhHHHHHHHHhHHCCC
Q 007573          233 D-----YDK----NVFVVTAMITGFCKVGMLENARLLFERIQPK---DCVSFNAMIAGYAQNGVAEEALRLFSGMIKMDM  300 (597)
Q Consensus       233 ~-----~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~  300 (597)
                      +     .+|    +..+|+..+..-.+.|+.+...-+|++..-+   =...|-..+.-....|+.+-|-.++....+--+
T Consensus       283 krpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~  362 (577)
T KOG1258|consen  283 KRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHV  362 (577)
T ss_pred             cccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcC
Confidence            2     122    3456777777777888888888888876553   223555556555566777777777766555433


Q ss_pred             CCCHHHHHHHHHHHhccchhHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHH---HHHhccC--CCChhhHHH
Q 007573          301 QPDDATLVSVFTACSALQLLNEGRQSHVLVIRNGFEANVSVCNAVITMYSRCGGILDSE---LAFRQIH--SPNLVSWNT  375 (597)
Q Consensus       301 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~---~~~~~~~--~~~~~~~~~  375 (597)
                      +-...+-..-..-+-..|+...|..+++.+...- +.-..+-..-+....+.|+.+.+.   .++....  ..+....+.
T Consensus       363 k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~  441 (577)
T KOG1258|consen  363 KKTPIIHLLEARFEESNGNFDDAKVILQRIESEY-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEK  441 (577)
T ss_pred             CCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhC-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHH
Confidence            3333222222223345667777777777776654 333333333445555666666665   3332222  112222222


Q ss_pred             HHHH-----HHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHH
Q 007573          376 IIAA-----FAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSAC  415 (597)
Q Consensus       376 li~~-----~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~  415 (597)
                      +.--     +.-.++.+.|..++.++.+. ++++...|..++..+
T Consensus       442 l~~~~~r~~~~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~  485 (577)
T KOG1258|consen  442 LYVKFARLRYKIREDADLARIILLEANDI-LPDCKVLYLELIRFE  485 (577)
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHH
Confidence            2111     12245566666666666543 244444455544433

>PRK09687 putative lyase; Provisional

Probab=95.20  E-value=2.8  Score=39.41  Aligned_cols=21  Identities=14%  Similarity=0.471  Sum_probs=9.1

Q ss_pred             HHHHHhccCcHHHHHHHHHHhH
Q 007573          411 LLSACGHAGKVNESMDLFELMV  432 (597)
Q Consensus       411 ll~~~~~~g~~~~a~~~~~~~~  432 (597)
                      .+.++...|.. +|...+..+.
T Consensus       241 a~~ALg~ig~~-~a~p~L~~l~  261 (280)
T PRK09687        241 IIEAAGELGDK-TLLPVLDTLL  261 (280)
T ss_pred             HHHHHHhcCCH-hHHHHHHHHH
Confidence            34444444443 3444444443

>PRK15331 chaperone protein SicA; Provisional

Probab=95.20  E-value=0.48  Score=39.60  Aligned_cols=86  Identities=14%  Similarity=0.103  Sum_probs=44.4

Q ss_pred             HHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHH
Q 007573          380 FAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEK  459 (597)
Q Consensus       380 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~  459 (597)
                      +...|++++|..+|+-+...+ .-+..-+..|..++...+++++|...|...... . .-|+..+-.....|...|+.+.
T Consensus        47 ~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l-~-~~dp~p~f~agqC~l~l~~~~~  123 (165)
T PRK15331         47 FYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTL-L-KNDYRPVFFTGQCQLLMRKAAK  123 (165)
T ss_pred             HHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-c-cCCCCccchHHHHHHHhCCHHH
Confidence            345566666666666655432 223333444555555556666666666554432 1 1223333344555566666666


Q ss_pred             HHHHHhhCC
Q 007573          460 AWQITQGMP  468 (597)
Q Consensus       460 A~~~~~~~~  468 (597)
                      |+..|+...
T Consensus       124 A~~~f~~a~  132 (165)
T PRK15331        124 ARQCFELVN  132 (165)
T ss_pred             HHHHHHHHH
Confidence            666655544

>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]

Probab=95.12  E-value=5.1  Score=47.61  Aligned_cols=312  Identities=9%  Similarity=0.022  Sum_probs=164.6

Q ss_pred             HHHHHHHcCCChHHHHHHHhhcCC----CCCCchHHHHHHHHHHhcCCHHHHHHHHhh-cCCCChhHHHHHHHHHHHcCC
Q 007573          210 VMITGYVKNERFCEARELFYRMPD----YDKNVFVVTAMITGFCKVGMLENARLLFER-IQPKDCVSFNAMIAGYAQNGV  284 (597)
Q Consensus       210 ~ll~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~li~~~~~~g~  284 (597)
                      ++..+-.+.+.+..|...++.-..    .......+-.+...|+..++++...-+... ...++   ...-|......|+
T Consensus      1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~s---l~~qil~~e~~g~ 1464 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADPS---LYQQILEHEASGN 1464 (2382)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCcc---HHHHHHHHHhhcc
Confidence            445556677888888888887321    111223344455588888888777766663 33332   2234445667788


Q ss_pred             hhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhccchhHHHHHHHHHHHHhCCCCcccH-HHHHHHHHHhcCCHHHHHHHHh
Q 007573          285 AEEALRLFSGMIKMDMQPDDATLVSVFTACSALQLLNEGRQSHVLVIRNGFEANVSV-CNAVITMYSRCGGILDSELAFR  363 (597)
Q Consensus       285 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~  363 (597)
                      +..|...|+++.+.+ ++...+++-++......+.++...-..+-..... .+.... ++.=+.+-.+.++++.......
T Consensus      1465 ~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e~~l~ 1542 (2382)
T KOG0890|consen 1465 WADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLESYLS 1542 (2382)
T ss_pred             HHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhhhhhh
Confidence            999999999888764 2335566666666555565555544333222221 222222 2333444567777777766655


Q ss_pred             ccCCCChhhHHHH--HHHHHHcC--CHHHHHHHHHHHHHCCCCC--------C-hHHHHHHHHHHhccCcHHHHHHHHHH
Q 007573          364 QIHSPNLVSWNTI--IAAFAQHG--HYEKALIFFSQMGLNGFDP--------D-GITFLSLLSACGHAGKVNESMDLFEL  430 (597)
Q Consensus       364 ~~~~~~~~~~~~l--i~~~~~~g--~~~~A~~~~~~m~~~g~~p--------~-~~~~~~ll~~~~~~g~~~~a~~~~~~  430 (597)
                         ..+..+|...  +....+..  +.-.-.+.++.+++.-+.|        + ...|..++....-.. .+.-.+    
T Consensus      1543 ---~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~e-l~~~~~---- 1614 (2382)
T KOG0890|consen 1543 ---DRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLE-LENSIE---- 1614 (2382)
T ss_pred             ---cccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHH-HHHHHH----
Confidence               4455555554  22222222  2111222333333221111        0 122333332221110 000011    


Q ss_pred             hHHhcCCCCC------hHHHHHHHHHHhhcCCHHHHHHHHhh----CCCCC-----CHHHHHHHHHHHHhcCCHHHHHHH
Q 007573          431 MVKVYGIIPS------SEHYTCLVDILSRAGQLEKAWQITQG----MPFEA-----DTGVWGSLLAACVINLNVELGELA  495 (597)
Q Consensus       431 ~~~~~~~~p~------~~~~~~l~~~~~~~g~~~~A~~~~~~----~~~~p-----~~~~~~~l~~~~~~~g~~~~a~~~  495 (597)
                        ...+..++      ...|..-+..-....+..+-.--+++    ....|     -..+|......++..|.++.|...
T Consensus      1615 --~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~na 1692 (2382)
T KOG0890|consen 1615 --ELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNA 1692 (2382)
T ss_pred             --HhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHH
Confidence              11122332      11122111111111111111111111    11122     245899999999999999999999


Q ss_pred             HHHHHhcCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHhCCC
Q 007573          496 AKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRVRLLMKEQGV  538 (597)
Q Consensus       496 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  538 (597)
                      +-++.+..  .+.++.-.+..+...|+...|+.+++...+...
T Consensus      1693 ll~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~ 1733 (2382)
T KOG0890|consen 1693 LLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKNF 1733 (2382)
T ss_pred             HHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhc
Confidence            98888877  467889999999999999999999999987543

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=95.11  E-value=2.4  Score=38.18  Aligned_cols=163  Identities=19%  Similarity=0.185  Sum_probs=110.2

Q ss_pred             ccHHHHHHHHHHhcCCHHHHHHHHhccCC--CCh-hhHHHHHH-HHHHcCCHHHHHHHHHHHHHCCCCC----ChHHHHH
Q 007573          339 VSVCNAVITMYSRCGGILDSELAFRQIHS--PNL-VSWNTIIA-AFAQHGHYEKALIFFSQMGLNGFDP----DGITFLS  410 (597)
Q Consensus       339 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~-~~~~~li~-~~~~~g~~~~A~~~~~~m~~~g~~p----~~~~~~~  410 (597)
                      ...+......+...++...+...+.....  ++. ........ .+...|+++.|...+.+...  ..|    ....+..
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~  172 (291)
T COG0457          95 AEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALE--LDPELNELAEALLA  172 (291)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCccchHHHHHH
Confidence            33444444555555556666666665542  221 22222333 67888999999999998855  233    2334444


Q ss_pred             HHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCCC-HHHHHHHHHHHHhcC
Q 007573          411 LLSACGHAGKVNESMDLFELMVKVYGIIP-SSEHYTCLVDILSRAGQLEKAWQITQGMP-FEAD-TGVWGSLLAACVINL  487 (597)
Q Consensus       411 ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~g  487 (597)
                      ....+...++.+.+...+....+.  ... ....+..+...+...++.+.|...+.... ..|+ ...+..+...+...+
T Consensus       173 ~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (291)
T COG0457         173 LGALLEALGRYEEALELLEKALKL--NPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELG  250 (291)
T ss_pred             hhhHHHHhcCHHHHHHHHHHHHhh--CcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcC
Confidence            444566788999999999888763  233 36778888888889999999999988765 4444 455566666655777


Q ss_pred             CHHHHHHHHHHHHhcCCC
Q 007573          488 NVELGELAAKKMRELDPQ  505 (597)
Q Consensus       488 ~~~~a~~~~~~~~~~~p~  505 (597)
                      ..+.+...+.+..+..|.
T Consensus       251 ~~~~~~~~~~~~~~~~~~  268 (291)
T COG0457         251 RYEEALEALEKALELDPD  268 (291)
T ss_pred             CHHHHHHHHHHHHHhCcc
Confidence            899999999999998887

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.06  E-value=1.8  Score=38.53  Aligned_cols=54  Identities=17%  Similarity=0.250  Sum_probs=27.1

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHCC--C-CCChHHHHHHHHHHhccCcHHHHHHH
Q 007573          373 WNTIIAAFAQHGHYEKALIFFSQMGLNG--F-DPDGITFLSLLSACGHAGKVNESMDL  427 (597)
Q Consensus       373 ~~~li~~~~~~g~~~~A~~~~~~m~~~g--~-~p~~~~~~~ll~~~~~~g~~~~a~~~  427 (597)
                      |-..|-.+.-..++..|...++.--+.+  . .-+..+...|+.+| ..|+.+++..+
T Consensus       193 ~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kv  249 (308)
T KOG1585|consen  193 YVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKV  249 (308)
T ss_pred             HHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHH
Confidence            3444444555566666666666543322  1 12344555666555 34555554444

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=94.94  E-value=0.72  Score=37.63  Aligned_cols=115  Identities=16%  Similarity=0.115  Sum_probs=60.5

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHCCC--CCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhc
Q 007573          377 IAAFAQHGHYEKALIFFSQMGLNGF--DPDGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRA  454 (597)
Q Consensus       377 i~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~  454 (597)
                      .....+.|++++|.+.|+.+...-.  +-....-..++.++.+.+++++|...+++.++.+.-.|+. -|...+.+++.-
T Consensus        17 a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~v-dYa~Y~~gL~~~   95 (142)
T PF13512_consen   17 AQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNV-DYAYYMRGLSYY   95 (142)
T ss_pred             HHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCc-cHHHHHHHHHHH
Confidence            3344556777777777777665311  1123445566667777777777777777776654444442 233333333222


Q ss_pred             CCHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 007573          455 GQLEKAWQITQGMPFEADTGVWGSLLAACVINLNVELGELAAKKMRELDPQNS  507 (597)
Q Consensus       455 g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~  507 (597)
                      ...+...   ..+.            ..-...+....|...|+++++.-|++.
T Consensus        96 ~~~~~~~---~~~~------------~~drD~~~~~~A~~~f~~lv~~yP~S~  133 (142)
T PF13512_consen   96 EQDEGSL---QSFF------------RSDRDPTPARQAFRDFEQLVRRYPNSE  133 (142)
T ss_pred             HHhhhHH---hhhc------------ccccCcHHHHHHHHHHHHHHHHCcCCh
Confidence            2111111   1110            111112235688888999998888864

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=94.93  E-value=7.1  Score=43.14  Aligned_cols=25  Identities=16%  Similarity=0.214  Sum_probs=15.4

Q ss_pred             HHHHHHHHHhCC--ChhHHHHHHhhCC
Q 007573           84 WNAIITGYWQNG--FLQESKNLFQSMP  108 (597)
Q Consensus        84 ~~~li~~~~~~g--~~~~A~~~~~~~~  108 (597)
                      ...+|.+|++.+  ..+.|+....+..
T Consensus       793 ~~~ilTs~vk~~~~~ie~aL~kI~~l~  819 (1265)
T KOG1920|consen  793 NLFILTSYVKSNPPEIEEALQKIKELQ  819 (1265)
T ss_pred             hHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence            345677777776  5566666555554

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=94.84  E-value=0.51  Score=47.40  Aligned_cols=132  Identities=17%  Similarity=0.083  Sum_probs=66.2

Q ss_pred             hhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHH
Q 007573          371 VSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDI  450 (597)
Q Consensus       371 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~  450 (597)
                      ...+.++.-+-+.|.++.|+++.+.-         .   .-.....+.|+++.|.++.+       ..+++..|..|.+.
T Consensus       296 ~~~~~i~~fL~~~G~~e~AL~~~~D~---------~---~rFeLAl~lg~L~~A~~~a~-------~~~~~~~W~~Lg~~  356 (443)
T PF04053_consen  296 DQGQSIARFLEKKGYPELALQFVTDP---------D---HRFELALQLGNLDIALEIAK-------ELDDPEKWKQLGDE  356 (443)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHSS-H---------H---HHHHHHHHCT-HHHHHHHCC-------CCSTHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHCCCHHHHHhhcCCh---------H---HHhHHHHhcCCHHHHHHHHH-------hcCcHHHHHHHHHH
Confidence            33555555566666666666553221         1   11222335566666665532       12355566666666


Q ss_pred             HhhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcHHHHHHH
Q 007573          451 LSRAGQLEKAWQITQGMPFEADTGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRVR  530 (597)
Q Consensus       451 ~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~  530 (597)
                      ..+.|+++-|++.+++..      -|..|+-.|...|+.+.-.++.+.+.+.+-     ++....++.-.|+.++..+++
T Consensus       357 AL~~g~~~lAe~c~~k~~------d~~~L~lLy~~~g~~~~L~kl~~~a~~~~~-----~n~af~~~~~lgd~~~cv~lL  425 (443)
T PF04053_consen  357 ALRQGNIELAEECYQKAK------DFSGLLLLYSSTGDREKLSKLAKIAEERGD-----INIAFQAALLLGDVEECVDLL  425 (443)
T ss_dssp             HHHTTBHHHHHHHHHHCT-------HHHHHHHHHHCT-HHHHHHHHHHHHHTT------HHHHHHHHHHHT-HHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHhhc------CccccHHHHHHhCCHHHHHHHHHHHHHccC-----HHHHHHHHHHcCCHHHHHHHH
Confidence            666666666666666654      244445555556666555555555444332     333344444556666666655


Q ss_pred             HH
Q 007573          531 LL  532 (597)
Q Consensus       531 ~~  532 (597)
                      .+
T Consensus       426 ~~  427 (443)
T PF04053_consen  426 IE  427 (443)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=94.72  E-value=3.9  Score=38.72  Aligned_cols=92  Identities=8%  Similarity=0.103  Sum_probs=48.3

Q ss_pred             HHHHHHHHHHHcCChhHHHHHHHHhHHC-CCCCC---HHHHHHHHHHHhccchhHHHHHHHHHHHHhCC-----CCcccH
Q 007573          271 SFNAMIAGYAQNGVAEEALRLFSGMIKM-DMQPD---DATLVSVFTACSALQLLNEGRQSHVLVIRNGF-----EANVSV  341 (597)
Q Consensus       271 ~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~  341 (597)
                      +|-.+.+++.+--++.+++.+-..-... |..|.   -....++-.+....+.++++.+.|+.+.+...     .....+
T Consensus        85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqv  164 (518)
T KOG1941|consen   85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQV  164 (518)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeeh
Confidence            5556666666666666666555443321 22221   11222344555566667777766666554321     112455


Q ss_pred             HHHHHHHHHhcCCHHHHHHHH
Q 007573          342 CNAVITMYSRCGGILDSELAF  362 (597)
Q Consensus       342 ~~~l~~~~~~~g~~~~A~~~~  362 (597)
                      +..|...|.+..++++|.-+.
T Consensus       165 cv~Lgslf~~l~D~~Kal~f~  185 (518)
T KOG1941|consen  165 CVSLGSLFAQLKDYEKALFFP  185 (518)
T ss_pred             hhhHHHHHHHHHhhhHHhhhh
Confidence            666666666666666665443

>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus

Probab=94.67  E-value=1.8  Score=34.52  Aligned_cols=65  Identities=11%  Similarity=0.214  Sum_probs=43.5

Q ss_pred             hhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCC
Q 007573          371 VSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMVKVYGI  437 (597)
Q Consensus       371 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~  437 (597)
                      ......+..+...|+-++-.+++..+.+.+ .+++.....+..+|.+.|+..++.+++.++.+. |+
T Consensus        87 e~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek-G~  151 (161)
T PF09205_consen   87 EYVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEK-GL  151 (161)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT-T-
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh-ch
Confidence            334555677778888888888888876533 677788888888888888888888888887765 54

Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.66  E-value=0.35  Score=44.85  Aligned_cols=160  Identities=13%  Similarity=-0.024  Sum_probs=119.1

Q ss_pred             HcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHH----HHHHHhhcCCH
Q 007573          382 QHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTC----LVDILSRAGQL  457 (597)
Q Consensus       382 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~----l~~~~~~~g~~  457 (597)
                      .+|+..+|...++++.+. .+.|...+...-.+|...|+...-...++++.-  ...|+...|..    +...+..+|-+
T Consensus       115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip--~wn~dlp~~sYv~GmyaFgL~E~g~y  191 (491)
T KOG2610|consen  115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIP--KWNADLPCYSYVHGMYAFGLEECGIY  191 (491)
T ss_pred             ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcc--ccCCCCcHHHHHHHHHHhhHHHhccc
Confidence            478888998999998865 466777788888899999999998888888775  33566544433    44455689999


Q ss_pred             HHHHHHHhhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC----CchHHHHHHHHHhcCCcHHHHHHHH
Q 007573          458 EKAWQITQGMP--FEADTGVWGSLLAACVINLNVELGELAAKKMRELDPQN----SAVYVMLSNLYAAAGMWRDVTRVRL  531 (597)
Q Consensus       458 ~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~  531 (597)
                      ++|++.-++..  .+.|...-.++.......|++.++.++..+--..=...    ...|-..+-.+...+.++.|.++|+
T Consensus       192 ~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD  271 (491)
T KOG2610|consen  192 DDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD  271 (491)
T ss_pred             hhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence            99999988765  34466677778888888999999998876654321111    4556677778888999999999999


Q ss_pred             HHHhCCCccCCCe
Q 007573          532 LMKEQGVTKQCAY  544 (597)
Q Consensus       532 ~~~~~~~~~~~~~  544 (597)
                      +-.-+.+.+..+.
T Consensus       272 ~ei~k~l~k~Da~  284 (491)
T KOG2610|consen  272 REIWKRLEKDDAV  284 (491)
T ss_pred             HHHHHHhhccchh
Confidence            8766666565553

>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]

Probab=94.64  E-value=0.39  Score=43.46  Aligned_cols=106  Identities=21%  Similarity=0.212  Sum_probs=80.9

Q ss_pred             HHHHHhccC--CCChhhHHHHHHHHHH-----cCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCc----------
Q 007573          358 SELAFRQIH--SPNLVSWNTIIAAFAQ-----HGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGK----------  420 (597)
Q Consensus       358 A~~~~~~~~--~~~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~----------  420 (597)
                      .+..|....  +.|-.+|..++..+..     .+..+=....++.|.+-|+.-|..+|..|++.+-+..-          
T Consensus        53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F  132 (406)
T KOG3941|consen   53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVF  132 (406)
T ss_pred             hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHH
Confidence            345555555  5677788888887764     35667777788999999999999999999998765432          


Q ss_pred             ------HHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHH-HHHHHH
Q 007573          421 ------VNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLE-KAWQIT  464 (597)
Q Consensus       421 ------~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~-~A~~~~  464 (597)
                            -+-++.++++|.-. |+.||.++-..|++++++.+..- +..++.
T Consensus       133 ~HYP~QQ~C~I~vLeqME~h-GVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~  182 (406)
T KOG3941|consen  133 LHYPQQQNCAIKVLEQMEWH-GVMPDKEIEDILVNAFGRWNFPTKKVKRML  182 (406)
T ss_pred             hhCchhhhHHHHHHHHHHHc-CCCCchHHHHHHHHHhccccccHHHHHHHH
Confidence                  24478899999765 99999999999999999988643 344443

>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase

Probab=94.59  E-value=0.27  Score=39.57  Aligned_cols=61  Identities=13%  Similarity=0.215  Sum_probs=28.1

Q ss_pred             HHHHHHHHHHhccCcHHHHHHHHHHhH--------------HhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhh
Q 007573          406 ITFLSLLSACGHAGKVNESMDLFELMV--------------KVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQG  466 (597)
Q Consensus       406 ~~~~~ll~~~~~~g~~~~a~~~~~~~~--------------~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~  466 (597)
                      .++..++.++++.|+++....+.+..=              ......|+..+..+++.+|+..|++..|.++++.
T Consensus         3 ~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~   77 (126)
T PF12921_consen    3 ELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDF   77 (126)
T ss_pred             HHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence            344555555555555555544443221              1113344444555555555555555555444443

The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=94.40  E-value=0.56  Score=44.08  Aligned_cols=53  Identities=9%  Similarity=0.048  Sum_probs=25.0

Q ss_pred             HHHHhcCCHHHHHHHHHHHHhcC--CCC----CchHHHHHHHHHhcCCcHHHHHHHHHH
Q 007573          481 AACVINLNVELGELAAKKMRELD--PQN----SAVYVMLSNLYAAAGMWRDVTRVRLLM  533 (597)
Q Consensus       481 ~~~~~~g~~~~a~~~~~~~~~~~--p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~  533 (597)
                      -++...|..-.|.+..+++.++.  ..|    ......++++|...|+.|.|..-|+..
T Consensus       214 ValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~A  272 (518)
T KOG1941|consen  214 VALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQA  272 (518)
T ss_pred             HHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence            34455555555555555554431  122    122234555555555555555544443

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=94.34  E-value=0.31  Score=38.46  Aligned_cols=90  Identities=13%  Similarity=0.061  Sum_probs=56.0

Q ss_pred             HHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCC-H---HHHHHHHHHHHhcC
Q 007573          414 ACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMP--FEAD-T---GVWGSLLAACVINL  487 (597)
Q Consensus       414 ~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~-~---~~~~~l~~~~~~~g  487 (597)
                      +....|+++.|++.|.+...  -.+-....||.-..++.-.|+.++|++-+++..  ..|. .   ..|..-...|...|
T Consensus        52 alaE~g~Ld~AlE~F~qal~--l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g  129 (175)
T KOG4555|consen   52 ALAEAGDLDGALELFGQALC--LAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG  129 (175)
T ss_pred             HHHhccchHHHHHHHHHHHH--hcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence            44566677777777766653  122345667777777777777777766666543  1121 1   13334445577888


Q ss_pred             CHHHHHHHHHHHHhcCCC
Q 007573          488 NVELGELAAKKMRELDPQ  505 (597)
Q Consensus       488 ~~~~a~~~~~~~~~~~p~  505 (597)
                      +.+.|..-|+.+-+++.+
T Consensus       130 ~dd~AR~DFe~AA~LGS~  147 (175)
T KOG4555|consen  130 NDDAARADFEAAAQLGSK  147 (175)
T ss_pred             chHHHHHhHHHHHHhCCH
Confidence            888888888888877765

>smart00299 CLH Clathrin heavy chain repeat homology

Probab=93.94  E-value=2.9  Score=34.48  Aligned_cols=123  Identities=11%  Similarity=0.177  Sum_probs=64.3

Q ss_pred             HHHHHHHHHhcCChHHHHHHHhhcCC---CCcchHHHHHHHHHhCCChhHHHHHHhhCCCCCcchHHHHHHHHHcCCChH
Q 007573           53 NNAKISALSRAGKISAARQLFDQMTT---KDVITWNAIITGYWQNGFLQESKNLFQSMPVKNIVSWNCMIAGCIDNDRID  129 (597)
Q Consensus        53 ~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~  129 (597)
                      ...++..+...+........++.+..   .++...|.++..|++. +..+.+..++.  ..+......+++.|.+.+-++
T Consensus        10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~-~~~~ll~~l~~--~~~~yd~~~~~~~c~~~~l~~   86 (140)
T smart00299       10 VSEVVELFEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKY-DPQKEIERLDN--KSNHYDIEKVGKLCEKAKLYE   86 (140)
T ss_pred             HHHHHHHHHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHH-CHHHHHHHHHh--ccccCCHHHHHHHHHHcCcHH
Confidence            34566666666777777777776644   2344567777777654 33444444442  234455555666666666666


Q ss_pred             HHHHHHccCCCCChhhHHHHHHHHHcC-CChHHHHHHHccCCCCCchhHHHHHHHHH
Q 007573          130 DAFDYFQAMPERNTATYNAMISGFLKH-GRLEEATRLFEQMPRRNVISYTAMLDGFM  185 (597)
Q Consensus       130 ~A~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~li~~~~  185 (597)
                      ++.-++..+..     +...+..+... ++++.|.+.+.+-  .++..|..++..+.
T Consensus        87 ~~~~l~~k~~~-----~~~Al~~~l~~~~d~~~a~~~~~~~--~~~~lw~~~~~~~l  136 (140)
T smart00299       87 EAVELYKKDGN-----FKDAIVTLIEHLGNYEKAIEYFVKQ--NNPELWAEVLKALL  136 (140)
T ss_pred             HHHHHHHhhcC-----HHHHHHHHHHcccCHHHHHHHHHhC--CCHHHHHHHHHHHH
Confidence            66655555421     11222223323 5555555555542  23445555554443

>smart00299 CLH Clathrin heavy chain repeat homology

Probab=93.91  E-value=3.1  Score=34.33  Aligned_cols=124  Identities=8%  Similarity=0.057  Sum_probs=57.6

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhh
Q 007573          374 NTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSR  453 (597)
Q Consensus       374 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~  453 (597)
                      ..++..+...+.......+++.+...+ ..+...++.++..+++.+ .....+.++.   .    ++.......+..+.+
T Consensus        11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~---~----~~~yd~~~~~~~c~~   81 (140)
T smart00299       11 SEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN---K----SNHYDIEKVGKLCEK   81 (140)
T ss_pred             HHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh---c----cccCCHHHHHHHHHH
Confidence            344555555566666666666666554 244555556666555432 2233333321   0    111222334555555


Q ss_pred             cCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 007573          454 AGQLEKAWQITQGMPFEADTGVWGSLLAACVIN-LNVELGELAAKKMRELDPQNSAVYVMLSNLY  517 (597)
Q Consensus       454 ~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~  517 (597)
                      .+.++++.-++.++..      +...+..+... ++++.|++++.+     +.++..|..++..+
T Consensus        82 ~~l~~~~~~l~~k~~~------~~~Al~~~l~~~~d~~~a~~~~~~-----~~~~~lw~~~~~~~  135 (140)
T smart00299       82 AKLYEEAVELYKKDGN------FKDAIVTLIEHLGNYEKAIEYFVK-----QNNPELWAEVLKAL  135 (140)
T ss_pred             cCcHHHHHHHHHhhcC------HHHHHHHHHHcccCHHHHHHHHHh-----CCCHHHHHHHHHHH
Confidence            5555555555555431      11122222222 556666665554     22344444444443

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=93.91  E-value=0.12  Score=30.85  Aligned_cols=26  Identities=12%  Similarity=0.110  Sum_probs=20.4

Q ss_pred             hHHHHHHHHHhcCCcHHHHHHHHHHH
Q 007573          509 VYVMLSNLYAAAGMWRDVTRVRLLMK  534 (597)
Q Consensus       509 ~~~~l~~~~~~~g~~~~A~~~~~~~~  534 (597)
                      ++..|+.+|.+.|++++|++++++..
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL   26 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQAL   26 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            36778888888999999988888854

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=93.76  E-value=11  Score=40.20  Aligned_cols=49  Identities=16%  Similarity=0.200  Sum_probs=30.6

Q ss_pred             cCCHHHHHHHHHHHHhcC---CCCC-chH-----HHHHHHHHhcCCcHHHHHHHHHHH
Q 007573          486 NLNVELGELAAKKMRELD---PQNS-AVY-----VMLSNLYAAAGMWRDVTRVRLLMK  534 (597)
Q Consensus       486 ~g~~~~a~~~~~~~~~~~---p~~~-~~~-----~~l~~~~~~~g~~~~A~~~~~~~~  534 (597)
                      .|+..+..........+.   |+.. ..|     ..+.+.|...|+.++|.....+..
T Consensus       547 ~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~  604 (608)
T PF10345_consen  547 EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLD  604 (608)
T ss_pred             cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence            677777666655555432   3322 222     245556888899999998887654

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=93.55  E-value=0.14  Score=30.53  Aligned_cols=28  Identities=11%  Similarity=-0.142  Sum_probs=22.1

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 007573          475 VWGSLLAACVINLNVELGELAAKKMREL  502 (597)
Q Consensus       475 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~  502 (597)
                      +|..|...|...|++++|+.++++++.+
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l   28 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQALAL   28 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            4678888899999999999999996644

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=93.44  E-value=16  Score=41.05  Aligned_cols=254  Identities=8%  Similarity=0.003  Sum_probs=135.3

Q ss_pred             HHHHhhcCCCCcchHHHHHHHHHhCCChhHHHHHHhhCCCCCcchHHHHHHHHHcCCCh-HHHHHHHccCCCCChhhHHH
Q 007573           70 RQLFDQMTTKDVITWNAIITGYWQNGFLQESKNLFQSMPVKNIVSWNCMIAGCIDNDRI-DDAFDYFQAMPERNTATYNA  148 (597)
Q Consensus        70 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~  148 (597)
                      ..+...+..+|+..-..-+..+.+.+..+..-.+...+..+|...-...+.++.+.+.. .....+...+..+|+.+-..
T Consensus       624 ~~L~~~L~D~d~~VR~~Av~~L~~~~~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~~d~~VR~~  703 (897)
T PRK13800        624 AELAPYLADPDPGVRRTAVAVLTETTPPGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPPAPALRDHLGSPDPVVRAA  703 (897)
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHhhhcchhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCchHHHHHHhcCCCHHHHHH
Confidence            34444555667666666677776666544223333333344555555555555443221 11122222233456666666


Q ss_pred             HHHHHHcCCChHHHHHHHccCCCCCchhHHHHHHHHHhCCChhHHHHHHHhcccCCcchHHHHHHHHHcCCChHH-HHHH
Q 007573          149 MISGFLKHGRLEEATRLFEQMPRRNVISYTAMLDGFMKKGEVDKARALSDYMSFKNVVSWTVMITGYVKNERFCE-AREL  227 (597)
Q Consensus       149 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ll~~~~~~g~~~~-a~~~  227 (597)
                      .+..+...+.. ....+...+..+|...-...+.++.+.+..+.   +......++...-...+.++...+..+. +...
T Consensus       704 A~~aL~~~~~~-~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~---l~~~l~D~~~~VR~~aa~aL~~~~~~~~~~~~~  779 (897)
T PRK13800        704 ALDVLRALRAG-DAALFAAALGDPDHRVRIEAVRALVSVDDVES---VAGAATDENREVRIAVAKGLATLGAGGAPAGDA  779 (897)
T ss_pred             HHHHHHhhccC-CHHHHHHHhcCCCHHHHHHHHHHHhcccCcHH---HHHHhcCCCHHHHHHHHHHHHHhccccchhHHH
Confidence            66666544321 12234445556676666666777666554432   3333455566666666666666665432 2333


Q ss_pred             HhhcCCCCCCchHHHHHHHHHHhcCCHHHHH-HHHhhcCCCChhHHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCHHH
Q 007573          228 FYRMPDYDKNVFVVTAMITGFCKVGMLENAR-LLFERIQPKDCVSFNAMIAGYAQNGVAEEALRLFSGMIKMDMQPDDAT  306 (597)
Q Consensus       228 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~  306 (597)
                      +..+.+ +++..+..+.+.++.+.|..+.+. .+...+..+|...-...+.++...+. +++...+..+.+   .|+...
T Consensus       780 L~~ll~-D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-~~a~~~L~~~L~---D~~~~V  854 (897)
T PRK13800        780 VRALTG-DPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAA-DVAVPALVEALT---DPHLDV  854 (897)
T ss_pred             HHHHhc-CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccc-cchHHHHHHHhc---CCCHHH
Confidence            333322 266777777778888877765442 34444555666566666677766664 445566655554   455555


Q ss_pred             HHHHHHHHhccchhHHHHHHHHHHHH
Q 007573          307 LVSVFTACSALQLLNEGRQSHVLVIR  332 (597)
Q Consensus       307 ~~~ll~~~~~~~~~~~a~~~~~~~~~  332 (597)
                      -...+.++........+...+..+.+
T Consensus       855 R~~A~~aL~~~~~~~~a~~~L~~al~  880 (897)
T PRK13800        855 RKAAVLALTRWPGDPAARDALTTALT  880 (897)
T ss_pred             HHHHHHHHhccCCCHHHHHHHHHHHh
Confidence            56666666665333345555555444

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=93.40  E-value=0.18  Score=29.53  Aligned_cols=31  Identities=19%  Similarity=0.001  Sum_probs=23.4

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 007573          475 VWGSLLAACVINLNVELGELAAKKMRELDPQ  505 (597)
Q Consensus       475 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~  505 (597)
                      +|..+...+...|++++|...++++++++|+
T Consensus         3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~   33 (34)
T PF13181_consen    3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD   33 (34)
T ss_dssp             HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            5666777777788888888888888877774

...

>PRK11619 lytic murein transglycosylase; Provisional

Probab=93.15  E-value=14  Score=39.47  Aligned_cols=453  Identities=10%  Similarity=0.002  Sum_probs=230.9

Q ss_pred             HHHHHHHHHhcCChHHHHHHHhhcCCCCcch---HHHHHHHHHhCCChhHHHHHHhhCCC-C-CcchHHHHHHHHHcCCC
Q 007573           53 NNAKISALSRAGKISAARQLFDQMTTKDVIT---WNAIITGYWQNGFLQESKNLFQSMPV-K-NIVSWNCMIAGCIDNDR  127 (597)
Q Consensus        53 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~li~~~~~~g~~~~A~~~~~~~~~-~-~~~~~~~ll~~~~~~~~  127 (597)
                      |....++ .+.|++..+.++-..+.......   |-.+...+ ....+++...++++-.. | ....-..-+..+.+.++
T Consensus        37 f~~A~~a-~~~g~~~~~~~~~~~l~d~pL~~yl~y~~L~~~l-~~~~~~ev~~Fl~~~~~~P~~~~Lr~~~l~~La~~~~  114 (644)
T PRK11619         37 YQQIKQA-WDNRQMDVVEQLMPTLKDYPLYPYLEYRQLTQDL-MNQPAVQVTNFIRANPTLPPARSLQSRFVNELARRED  114 (644)
T ss_pred             HHHHHHH-HHCCCHHHHHHHHHhccCCCcHhHHHHHHHHhcc-ccCCHHHHHHHHHHCCCCchHHHHHHHHHHHHHHccC
Confidence            3333333 47788888888887776432332   32332221 12345666666666553 2 22222333344556677


Q ss_pred             hHHHHHHHccCCCCChhhHHHHHHHHHcCCChHHHHHHHccCC---CCCchhHHHHHHHHHhCCChhHHHHHHHhcccCC
Q 007573          128 IDDAFDYFQAMPERNTATYNAMISGFLKHGRLEEATRLFEQMP---RRNVISYTAMLDGFMKKGEVDKARALSDYMSFKN  204 (597)
Q Consensus       128 ~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~  204 (597)
                      .......+.. .+.+....-....+....|+.++|....+.+=   ...+...+.+++.+.+.|......-         
T Consensus       115 w~~~~~~~~~-~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~~p~~cd~l~~~~~~~g~lt~~d~---------  184 (644)
T PRK11619        115 WRGLLAFSPE-KPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKSLPNACDKLFSVWQQSGKQDPLAY---------  184 (644)
T ss_pred             HHHHHHhcCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCChHHHHHHHHHHHcCCCCHHHH---------
Confidence            7766663322 24455544556666777777666655444431   2345667777777776666544321         


Q ss_pred             cchHHHHHHHHHcCCChHHHHHHHhhcCCCCCCc-hHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHH--HH
Q 007573          205 VVSWTVMITGYVKNERFCEARELFYRMPDYDKNV-FVVTAMITGFCKVGMLENARLLFERIQPKDCVSFNAMIAGY--AQ  281 (597)
Q Consensus       205 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~--~~  281 (597)
                         + .-+......|+...|..+...+.   ++. .....++..+.   +...+...+.... ++...-..++.++  ..
T Consensus       185 ---w-~R~~~al~~~~~~lA~~l~~~l~---~~~~~~a~a~~al~~---~p~~~~~~~~~~~-~~~~~~~~~~~~l~Rla  253 (644)
T PRK11619        185 ---L-ERIRLAMKAGNTGLVTYLAKQLP---ADYQTIASALIKLQN---DPNTVETFARTTG-PTDFTRQMAAVAFASVA  253 (644)
T ss_pred             ---H-HHHHHHHHCCCHHHHHHHHHhcC---hhHHHHHHHHHHHHH---CHHHHHHHhhccC-CChhhHHHHHHHHHHHH
Confidence               1 22344556777777777766652   221 22333444433   3333444443332 2221111122222  23


Q ss_pred             cCChhHHHHHHHHhHHCC-CCCCHHH--HHHHHHHHhccchhHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHH
Q 007573          282 NGVAEEALRLFSGMIKMD-MQPDDAT--LVSVFTACSALQLLNEGRQSHVLVIRNGFEANVSVCNAVITMYSRCGGILDS  358 (597)
Q Consensus       282 ~g~~~~A~~~~~~m~~~g-~~p~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A  358 (597)
                      ..+.+.|..++....... ..++...  ...+.......+....+...+......  ..+..+...-+....+.++++.+
T Consensus       254 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~--~~~~~~~e~r~r~Al~~~dw~~~  331 (644)
T PRK11619        254 RQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMR--SQSTSLLERRVRMALGTGDRRGL  331 (644)
T ss_pred             HhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccc--cCCcHHHHHHHHHHHHccCHHHH
Confidence            456788999988775443 3333221  222222222221134444444433222  22445555556666688899998


Q ss_pred             HHHHhccCC---CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHH-HHHHHHhHHh
Q 007573          359 ELAFRQIHS---PNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNES-MDLFELMVKV  434 (597)
Q Consensus       359 ~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a-~~~~~~~~~~  434 (597)
                      ...+..|.+   ....-.-=+..++...|+.++|...|+++..   ..   +|..++.+- +.|..-.- ......-.. 
T Consensus       332 ~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~---~~---~fYG~LAa~-~Lg~~~~~~~~~~~~~~~-  403 (644)
T PRK11619        332 NTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ---QR---GFYPMVAAQ-RLGEEYPLKIDKAPKPDS-  403 (644)
T ss_pred             HHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc---CC---CcHHHHHHH-HcCCCCCCCCCCCCchhh-
Confidence            888888862   1122222345566668999999999988743   22   344433221 12211000 000000000 


Q ss_pred             cCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC---CCCchHH
Q 007573          435 YGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMPFEADTGVWGSLLAACVINLNVELGELAAKKMRELDP---QNSAVYV  511 (597)
Q Consensus       435 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p---~~~~~~~  511 (597)
                       .+...+  -..-+..+...|...+|...+..+....+......+.......|..+.++....+....+.   .-|..|.
T Consensus       404 -~~~~~~--~~~ra~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~A~~~g~~~~ai~~~~~~~~~~~~~~rfp~~~~  480 (644)
T PRK11619        404 -ALTQGP--EMARVRELMYWNMDNTARSEWANLVASRSKTEQAQLARYAFNQQWWDLSVQATIAGKLWDHLEERFPLAWN  480 (644)
T ss_pred             -hhccCh--HHHHHHHHHHCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCHHHHHHHHhhchhHHHHHHhCCcchH
Confidence             000001  1123455677899999988887765445556666666667788888888887765543211   1244566


Q ss_pred             HHHHHHHhcCCcHHHHHHHHHHHhCCCccC
Q 007573          512 MLSNLYAAAGMWRDVTRVRLLMKEQGVTKQ  541 (597)
Q Consensus       512 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~  541 (597)
                      .....+.+.-.++.+.-.---..+++..+.
T Consensus       481 ~~~~~~a~~~~v~~~lv~ai~rqES~f~p~  510 (644)
T PRK11619        481 DEFRRYTSGKGIPQSYAMAIARQESAWNPK  510 (644)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHhcCCCCC
Confidence            666666666667765543222235555443

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=92.69  E-value=0.24  Score=31.21  Aligned_cols=31  Identities=16%  Similarity=0.177  Sum_probs=27.6

Q ss_pred             CchHHHHHHHHHhcCCcHHHHHHHHHHHhCC
Q 007573          507 SAVYVMLSNLYAAAGMWRDVTRVRLLMKEQG  537 (597)
Q Consensus       507 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  537 (597)
                      |.++..++.+|...|++++|+++++++.+..
T Consensus         1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~   31 (44)
T PF13428_consen    1 PAAWLALARAYRRLGQPDEAERLLRRALALD   31 (44)
T ss_pred             CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence            4578899999999999999999999998754

>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]

Probab=92.65  E-value=1.3  Score=40.28  Aligned_cols=97  Identities=14%  Similarity=0.116  Sum_probs=67.6

Q ss_pred             HHHHhhcC--CCChhHHHHHHHHHHHc-----CChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhcc-------------
Q 007573          258 RLLFERIQ--PKDCVSFNAMIAGYAQN-----GVAEEALRLFSGMIKMDMQPDDATLVSVFTACSAL-------------  317 (597)
Q Consensus       258 ~~~~~~~~--~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~-------------  317 (597)
                      ++.|....  ++|-.+|-.++..+...     +..+=....++.|.+-|+.-|..+|..+++.+-+.             
T Consensus        54 e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~  133 (406)
T KOG3941|consen   54 EKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFL  133 (406)
T ss_pred             hhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHh
Confidence            34455554  45666677666666543     44555556677788888888888888888775422             


Q ss_pred             ---chhHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCC
Q 007573          318 ---QLLNEGRQSHVLVIRNGFEANVSVCNAVITMYSRCGG  354 (597)
Q Consensus       318 ---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  354 (597)
                         ..-+-+..++++|...|+.||..+-..|++++.+.+-
T Consensus       134 HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~  173 (406)
T KOG3941|consen  134 HYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF  173 (406)
T ss_pred             hCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence               2334577888889999999999998889988877664

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=92.62  E-value=1.5  Score=36.64  Aligned_cols=96  Identities=15%  Similarity=0.100  Sum_probs=58.3

Q ss_pred             HHHHHHH---HHhccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCCCHHHHHHHHH
Q 007573          407 TFLSLLS---ACGHAGKVNESMDLFELMVKVYGIIPS-SEHYTCLVDILSRAGQLEKAWQITQGMP-FEADTGVWGSLLA  481 (597)
Q Consensus       407 ~~~~ll~---~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~~  481 (597)
                      +...|+.   .-...++.+++..++..+.-   +.|. +..-..-...+.+.|++.+|..+++++. ..|....-.+|+.
T Consensus         9 iv~gLie~~~~al~~~~~~D~e~lL~ALrv---LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA   85 (160)
T PF09613_consen    9 IVGGLIEVLSVALRLGDPDDAEALLDALRV---LRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLA   85 (160)
T ss_pred             HHHHHHHHHHHHHccCChHHHHHHHHHHHH---hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHH
Confidence            3444444   34567788888888888864   4454 2222233455778899999999998877 4455555566666


Q ss_pred             HHHhcCCHHHHHHHHHHHHhcCCC
Q 007573          482 ACVINLNVELGELAAKKMRELDPQ  505 (597)
Q Consensus       482 ~~~~~g~~~~a~~~~~~~~~~~p~  505 (597)
                      .|.....-..=.....++++.+++
T Consensus        86 ~CL~~~~D~~Wr~~A~evle~~~d  109 (160)
T PF09613_consen   86 LCLYALGDPSWRRYADEVLESGAD  109 (160)
T ss_pred             HHHHHcCChHHHHHHHHHHhcCCC
Confidence            665443323334445556665553

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=92.47  E-value=0.29  Score=45.47  Aligned_cols=95  Identities=12%  Similarity=0.038  Sum_probs=72.6

Q ss_pred             HHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHhcC
Q 007573          411 LLSACGHAGKVNESMDLFELMVKVYGIIP-SSEHYTCLVDILSRAGQLEKAWQITQGMP--FEADTGVWGSLLAACVINL  487 (597)
Q Consensus       411 ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g  487 (597)
                      -.+-|.+.|.+++|+..|...+   .+.| ++.++..-..+|.+..++..|+.-.....  .+.-...|..-+.+-...|
T Consensus       103 ~GN~yFKQgKy~EAIDCYs~~i---a~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg  179 (536)
T KOG4648|consen  103 RGNTYFKQGKYEEAIDCYSTAI---AVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG  179 (536)
T ss_pred             hhhhhhhccchhHHHHHhhhhh---ccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence            3556888999999999998776   3455 77888888889999999988877666554  1112335666677777788


Q ss_pred             CHHHHHHHHHHHHhcCCCCCc
Q 007573          488 NVELGELAAKKMRELDPQNSA  508 (597)
Q Consensus       488 ~~~~a~~~~~~~~~~~p~~~~  508 (597)
                      ...+|.+-++.++++.|++..
T Consensus       180 ~~~EAKkD~E~vL~LEP~~~E  200 (536)
T KOG4648|consen  180 NNMEAKKDCETVLALEPKNIE  200 (536)
T ss_pred             hHHHHHHhHHHHHhhCcccHH
Confidence            999999999999999998543

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=92.16  E-value=0.91  Score=41.98  Aligned_cols=60  Identities=15%  Similarity=0.224  Sum_probs=37.4

Q ss_pred             HHHHHHHHHHhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 007573          442 EHYTCLVDILSRAGQLEKAWQITQGMP-FEA-DTGVWGSLLAACVINLNVELGELAAKKMRE  501 (597)
Q Consensus       442 ~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  501 (597)
                      .++..++..+...|+.+.+...++++. ..| +...|..++.+|...|+...|+..|+++.+
T Consensus       154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~  215 (280)
T COG3629         154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK  215 (280)
T ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence            355566666666666666666666654 233 555666666666666666666666666654

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=92.07  E-value=8.5  Score=37.70  Aligned_cols=66  Identities=15%  Similarity=0.138  Sum_probs=56.2

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----CCchHHHHHHHHHhcCCcHHHHHHHHHHHhCC
Q 007573          472 DTGVWGSLLAACVINLNVELGELAAKKMRELDPQ----NSAVYVMLSNLYAAAGMWRDVTRVRLLMKEQG  537 (597)
Q Consensus       472 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  537 (597)
                      ...+|..+...+.+.|.++.|...+.++...++.    .+.+...-+..+...|+.++|...++......
T Consensus       145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~  214 (352)
T PF02259_consen  145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCR  214 (352)
T ss_pred             HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            4568999999999999999999999999986632    36777778999999999999999999888733

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=91.99  E-value=1.3  Score=36.99  Aligned_cols=83  Identities=13%  Similarity=0.072  Sum_probs=52.9

Q ss_pred             HHHHHHHHHH---hhcCCHHHHHHHHhhCC-CCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 007573          442 EHYTCLVDIL---SRAGQLEKAWQITQGMP-FEADTGVWGSL-LAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNL  516 (597)
Q Consensus       442 ~~~~~l~~~~---~~~g~~~~A~~~~~~~~-~~p~~~~~~~l-~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~  516 (597)
                      .+.+.|++..   .+.++.++++.++..+. .+|.......+ ...+...|++.+|+++++.+.+..|..+..-..++.+
T Consensus         8 ~iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~C   87 (160)
T PF09613_consen    8 EIVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALC   87 (160)
T ss_pred             HHHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHH
Confidence            3444554443   35667778887777765 55654433322 2336677888888888888777777666666666777


Q ss_pred             HHhcCCcH
Q 007573          517 YAAAGMWR  524 (597)
Q Consensus       517 ~~~~g~~~  524 (597)
                      +...|+.+
T Consensus        88 L~~~~D~~   95 (160)
T PF09613_consen   88 LYALGDPS   95 (160)
T ss_pred             HHHcCChH
Confidence            76666654

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=91.83  E-value=5.8  Score=39.56  Aligned_cols=59  Identities=8%  Similarity=-0.061  Sum_probs=36.7

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--CchHHHHHHHHHhcCCcHHHHHHHHHHHh
Q 007573          477 GSLLAACVINLNVELGELAAKKMRELDPQN--SAVYVMLSNLYAAAGMWRDVTRVRLLMKE  535 (597)
Q Consensus       477 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  535 (597)
                      ..|..++.+.|+.++|++.++++++..|..  ..+...|+.++...+.+.++..++.+-.+
T Consensus       263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD  323 (539)
T PF04184_consen  263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD  323 (539)
T ss_pred             HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence            445555566666777777776666655542  44566666666667777666666666543

The molecular function of this protein is uncertain.

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=91.61  E-value=9  Score=33.69  Aligned_cols=161  Identities=12%  Similarity=-0.003  Sum_probs=91.9

Q ss_pred             cccHHHHHHHHHHhcCCHHHHHHHHhccCCCChh-hHHHHHH--HHHHcCCHHHHHHHHHHHHHCCCCCCh--HHHHHHH
Q 007573          338 NVSVCNAVITMYSRCGGILDSELAFRQIHSPNLV-SWNTIIA--AFAQHGHYEKALIFFSQMGLNGFDPDG--ITFLSLL  412 (597)
Q Consensus       338 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~li~--~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~ll  412 (597)
                      -+.+||-|.-.+...|+++.|.+.|+...+.|+. -|..+=.  ++.-.|++.-|.+-+.+.-+.. +.|+  ..|..+ 
T Consensus        98 m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D-~~DPfR~LWLYl-  175 (297)
T COG4785          98 MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDD-PNDPFRSLWLYL-  175 (297)
T ss_pred             cHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhcC-CCChHHHHHHHH-
Confidence            3567888888888899999999999988754442 2222222  2334688999988887776653 2222  222222 


Q ss_pred             HHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHH-HHHHhhcCCHHHHHHHHhhCCC------CCCHHHHHHHHHHHHh
Q 007573          413 SACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCL-VDILSRAGQLEKAWQITQGMPF------EADTGVWGSLLAACVI  485 (597)
Q Consensus       413 ~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~------~p~~~~~~~l~~~~~~  485 (597)
                        -...-++.+|..-+.+--+  +  .|.+-|... +..|.-.=..+.+.+-...-..      +--..+|--|..-+..
T Consensus       176 --~E~k~dP~~A~tnL~qR~~--~--~d~e~WG~~iV~~yLgkiS~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~  249 (297)
T COG4785         176 --NEQKLDPKQAKTNLKQRAE--K--SDKEQWGWNIVEFYLGKISEETLMERLKADATDNTSLAEHLTETYFYLGKYYLS  249 (297)
T ss_pred             --HHhhCCHHHHHHHHHHHHH--h--ccHhhhhHHHHHHHHhhccHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhc
Confidence              2234466666654433222  2  243444332 2333222222223222222111      1113466677788889


Q ss_pred             cCCHHHHHHHHHHHHhcCCCC
Q 007573          486 NLNVELGELAAKKMRELDPQN  506 (597)
Q Consensus       486 ~g~~~~a~~~~~~~~~~~p~~  506 (597)
                      .|+.++|..+|+-++..+.-+
T Consensus       250 ~G~~~~A~~LfKLaiannVyn  270 (297)
T COG4785         250 LGDLDEATALFKLAVANNVYN  270 (297)
T ss_pred             cccHHHHHHHHHHHHHHhHHH
Confidence            999999999999998766544

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=91.46  E-value=1.4  Score=36.12  Aligned_cols=72  Identities=8%  Similarity=-0.063  Sum_probs=39.1

Q ss_pred             hcCCHHHHHHHHhhCC-CCCCHHHHHH-HHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcH
Q 007573          453 RAGQLEKAWQITQGMP-FEADTGVWGS-LLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGMWR  524 (597)
Q Consensus       453 ~~g~~~~A~~~~~~~~-~~p~~~~~~~-l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~  524 (597)
                      +.+++++++.++..|. ..|+...... -...+...|++++|.++++.+.+..+..+..-..++.++...|+.+
T Consensus        22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp~   95 (153)
T TIGR02561        22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDAE   95 (153)
T ss_pred             hcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCChH
Confidence            4566666666666654 4444332222 1223556666666666666666655554544455555555555543

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=91.40  E-value=28  Score=38.91  Aligned_cols=141  Identities=13%  Similarity=0.056  Sum_probs=75.6

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHhccCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCc
Q 007573          341 VCNAVITMYSRCGGILDSELAFRQIHSPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGK  420 (597)
Q Consensus       341 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~  420 (597)
                      .+.-.++.-.+.|.+.+|..++.--.+.-...|.+....+...+.+++|.-.|+..-+         ....+.++..+|+
T Consensus       910 ~~~e~~n~I~kh~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~d  980 (1265)
T KOG1920|consen  910 YFPECKNYIKKHGLYDEALALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGD  980 (1265)
T ss_pred             ccHHHHHHHHhcccchhhhheeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhcc
Confidence            3444445555566666666555332222233444444445556667777666654321         2234566777778


Q ss_pred             HHHHHHHHHHhHHhcCCCCC--hHHHHHHHHHHhhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 007573          421 VNESMDLFELMVKVYGIIPS--SEHYTCLVDILSRAGQLEKAWQITQGMPFEADTGVWGSLLAACVINLNVELGELAAKK  498 (597)
Q Consensus       421 ~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~  498 (597)
                      +++|..+..++..    .-+  ..+-..|+.-+...+++-+|-++..+....|...     +..+++...+++|.++...
T Consensus       981 Wr~~l~~a~ql~~----~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd~~~a-----v~ll~ka~~~~eAlrva~~ 1051 (1265)
T KOG1920|consen  981 WREALSLAAQLSE----GKDELVILAEELVSRLVEQRKHYEAAKILLEYLSDPEEA-----VALLCKAKEWEEALRVASK 1051 (1265)
T ss_pred             HHHHHHHHHhhcC----CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcCHHHH-----HHHHhhHhHHHHHHHHHHh
Confidence            8887777665532    112  2223566777777888888877776655333221     1223344455556555544


Q ss_pred             H
Q 007573          499 M  499 (597)
Q Consensus       499 ~  499 (597)
                      .
T Consensus      1052 ~ 1052 (1265)
T KOG1920|consen 1052 A 1052 (1265)
T ss_pred             c
Confidence            4

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=91.27  E-value=11  Score=34.17  Aligned_cols=69  Identities=17%  Similarity=0.164  Sum_probs=44.8

Q ss_pred             HHHHhcCCHHHHHHHHhhcCCC------ChhHHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHH
Q 007573          246 TGFCKVGMLENARLLFERIQPK------DCVSFNAMIAGYAQNGVAEEALRLFSGMIKMDMQPDDATLVSVFTAC  314 (597)
Q Consensus       246 ~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~  314 (597)
                      ..-.+.|++++|.+.|+.+...      ...+--.++.++.+.+++++|+..+++..+.-..-...-|..-|.++
T Consensus        42 ~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgL  116 (254)
T COG4105          42 LTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGL  116 (254)
T ss_pred             HHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHH
Confidence            3445678888888888887653      22355567777888888888888888877653333333444444443

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=91.06  E-value=9.5  Score=32.98  Aligned_cols=89  Identities=10%  Similarity=0.027  Sum_probs=67.1

Q ss_pred             HHHHHHcCCChHHHHHHHhhcCCCCCCch----HHHHHHHHHHhcCCHHHHHHHHhhcCCCChhH--HHHHHHHHHHcCC
Q 007573          211 MITGYVKNERFCEARELFYRMPDYDKNVF----VVTAMITGFCKVGMLENARLLFERIQPKDCVS--FNAMIAGYAQNGV  284 (597)
Q Consensus       211 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~li~~~~~~g~  284 (597)
                      +...+...+++++|+..++.......|..    +--.|.......|.+++|+..++....++-..  ...-.+.+...|+
T Consensus        95 lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~  174 (207)
T COG2976          95 LAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGD  174 (207)
T ss_pred             HHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCc
Confidence            34567788999999999988776444332    23345677788899999999999888875443  4455677899999


Q ss_pred             hhHHHHHHHHhHHCC
Q 007573          285 AEEALRLFSGMIKMD  299 (597)
Q Consensus       285 ~~~A~~~~~~m~~~g  299 (597)
                      -++|..-|.+.++.+
T Consensus       175 k~~Ar~ay~kAl~~~  189 (207)
T COG2976         175 KQEARAAYEKALESD  189 (207)
T ss_pred             hHHHHHHHHHHHHcc
Confidence            999999999988875

>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1

Probab=90.92  E-value=5.1  Score=33.98  Aligned_cols=33  Identities=6%  Similarity=0.123  Sum_probs=16.2

Q ss_pred             HHHHHHHHCCCCCChHHHHHHHHHHhccCcHHH
Q 007573          391 IFFSQMGLNGFDPDGITFLSLLSACGHAGKVNE  423 (597)
Q Consensus       391 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~  423 (597)
                      ++++-+.+.+++|+...+..++..+.+.|....
T Consensus        15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~   47 (167)
T PF07035_consen   15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQ   47 (167)
T ss_pred             HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH
Confidence            344444444555555555555555555554433

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=90.66  E-value=15  Score=34.59  Aligned_cols=18  Identities=6%  Similarity=-0.346  Sum_probs=13.3

Q ss_pred             HHhcCCHHHHHHHHHHHH
Q 007573          483 CVINLNVELGELAAKKMR  500 (597)
Q Consensus       483 ~~~~g~~~~a~~~~~~~~  500 (597)
                      +.+.++++.|.+.|+-++
T Consensus       256 ~~~~k~y~~A~~w~~~al  273 (278)
T PF08631_consen  256 HYKAKNYDEAIEWYELAL  273 (278)
T ss_pred             HHhhcCHHHHHHHHHHHH
Confidence            557788888888887654

It is also involved in sporulation [].

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=90.54  E-value=7.7  Score=33.55  Aligned_cols=95  Identities=14%  Similarity=0.083  Sum_probs=48.3

Q ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChH--HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChH------H
Q 007573          372 SWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGI--TFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSE------H  443 (597)
Q Consensus       372 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~------~  443 (597)
                      .+..+...|++.|+.++|++.|.++.+....|...  .+..++......+++..+.....++.....-..|..      .
T Consensus        38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~  117 (177)
T PF10602_consen   38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV  117 (177)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence            34455556666666666666666666544344322  344555555556666666655555543211111111      1


Q ss_pred             HHHHHHHHhhcCCHHHHHHHHhhCC
Q 007573          444 YTCLVDILSRAGQLEKAWQITQGMP  468 (597)
Q Consensus       444 ~~~l~~~~~~~g~~~~A~~~~~~~~  468 (597)
                      |..|.  +...|++.+|-+.|-...
T Consensus       118 ~~gL~--~l~~r~f~~AA~~fl~~~  140 (177)
T PF10602_consen  118 YEGLA--NLAQRDFKEAAELFLDSL  140 (177)
T ss_pred             HHHHH--HHHhchHHHHHHHHHccC
Confidence            22221  234667777777765554

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=90.38  E-value=2.3  Score=34.87  Aligned_cols=78  Identities=13%  Similarity=0.124  Sum_probs=49.7

Q ss_pred             HHHHHHHHHH---hccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCCCCC-CHHHHHHHHH
Q 007573          406 ITFLSLLSAC---GHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMPFEA-DTGVWGSLLA  481 (597)
Q Consensus       406 ~~~~~ll~~~---~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~l~~  481 (597)
                      ...+.|+...   ...++++++..+++.+.--..-.+...++.  ...+...|++++|..+++++...+ ....-..|+.
T Consensus         8 ~iv~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~d--g~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A   85 (153)
T TIGR02561         8 RLLGGLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFD--GWLLIARGNYDEAARILRELLSSAGAPPYGKALLA   85 (153)
T ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhH--HHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHH
Confidence            3444454433   457899999999998874322223344443  455789999999999999998433 4344445555


Q ss_pred             HHHh
Q 007573          482 ACVI  485 (597)
Q Consensus       482 ~~~~  485 (597)
                      .|..
T Consensus        86 ~CL~   89 (153)
T TIGR02561        86 LCLN   89 (153)
T ss_pred             HHHH
Confidence            5543

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=90.22  E-value=9.2  Score=34.74  Aligned_cols=170  Identities=11%  Similarity=0.124  Sum_probs=99.4

Q ss_pred             cCCChHHHHHHHccCCC--C-----CchhHHHHHHHHHhCCChhHHHHHHHhcc-------c--CCcchHHHHHHHHHcC
Q 007573          155 KHGRLEEATRLFEQMPR--R-----NVISYTAMLDGFMKKGEVDKARALSDYMS-------F--KNVVSWTVMITGYVKN  218 (597)
Q Consensus       155 ~~g~~~~A~~~~~~~~~--~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~-------~--~~~~~~~~ll~~~~~~  218 (597)
                      +..++++|+.-|++..+  +     .-.+.-.+|..+.+.|++++....|.++.       .  -+..+.|+++......
T Consensus        39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS  118 (440)
T KOG1464|consen   39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTS  118 (440)
T ss_pred             cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhh
Confidence            34567788877776653  1     12345567888888888888888887771       1  2345566666666555


Q ss_pred             CChHHHHHHHhhcCC---CCCCch----HHHHHHHHHHhcCCHHHHHHHHhhcCCC--------C-------hhHHHHHH
Q 007573          219 ERFCEARELFYRMPD---YDKNVF----VVTAMITGFCKVGMLENARLLFERIQPK--------D-------CVSFNAMI  276 (597)
Q Consensus       219 g~~~~a~~~~~~~~~---~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~-------~~~~~~li  276 (597)
                      .+.+.-...|+.-.+   -..+..    +-.-|...|...|.+.+..++++++...        |       ...|..=|
T Consensus       119 ~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEI  198 (440)
T KOG1464|consen  119 KNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEI  198 (440)
T ss_pred             hhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHh
Confidence            555544444443322   111222    3345777777778887777777765421        1       13667777


Q ss_pred             HHHHHcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHh-----ccchhHHHH
Q 007573          277 AGYAQNGVAEEALRLFSGMIKMDMQPDDATLVSVFTACS-----ALQLLNEGR  324 (597)
Q Consensus       277 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~-----~~~~~~~a~  324 (597)
                      ..|..+.+-.+-..+|++.+...-.........+++-|.     +.|.++.|.
T Consensus       199 QmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~Ah  251 (440)
T KOG1464|consen  199 QMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAH  251 (440)
T ss_pred             hhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHH
Confidence            778877777777777777654322222233344555554     345555544

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=90.21  E-value=11  Score=32.51  Aligned_cols=90  Identities=12%  Similarity=0.027  Sum_probs=56.7

Q ss_pred             HHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHH-----HHHHHHhhcCCHHHHHHHHhhCCCCCC--HHHHHHHHHHHH
Q 007573          412 LSACGHAGKVNESMDLFELMVKVYGIIPSSEHYT-----CLVDILSRAGQLEKAWQITQGMPFEAD--TGVWGSLLAACV  484 (597)
Q Consensus       412 l~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~-----~l~~~~~~~g~~~~A~~~~~~~~~~p~--~~~~~~l~~~~~  484 (597)
                      ...+...|++++|...++.....    |..+.+.     .|.......|.+++|++.++... .++  ......-+..+.
T Consensus        96 Ak~~ve~~~~d~A~aqL~~~l~~----t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~-~~~w~~~~~elrGDill  170 (207)
T COG2976          96 AKAEVEANNLDKAEAQLKQALAQ----TKDENLKALAALRLARVQLQQKKADAALKTLDTIK-EESWAAIVAELRGDILL  170 (207)
T ss_pred             HHHHHhhccHHHHHHHHHHHHcc----chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccc-cccHHHHHHHHhhhHHH
Confidence            34566777777777777765432    2222222     34566677788888888887765 222  222344455677


Q ss_pred             hcCCHHHHHHHHHHHHhcCCCC
Q 007573          485 INLNVELGELAAKKMRELDPQN  506 (597)
Q Consensus       485 ~~g~~~~a~~~~~~~~~~~p~~  506 (597)
                      ..|+-++|+..|+++++.++.+
T Consensus       171 ~kg~k~~Ar~ay~kAl~~~~s~  192 (207)
T COG2976         171 AKGDKQEARAAYEKALESDASP  192 (207)
T ss_pred             HcCchHHHHHHHHHHHHccCCh
Confidence            8888888888888888776443

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=90.21  E-value=0.46  Score=27.60  Aligned_cols=30  Identities=13%  Similarity=0.142  Sum_probs=25.5

Q ss_pred             chHHHHHHHHHhcCCcHHHHHHHHHHHhCC
Q 007573          508 AVYVMLSNLYAAAGMWRDVTRVRLLMKEQG  537 (597)
Q Consensus       508 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  537 (597)
                      ..+..++.++...|++++|++.+++..+..
T Consensus         2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~   31 (34)
T PF07719_consen    2 EAWYYLGQAYYQLGNYEEAIEYFEKALELD   31 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence            467899999999999999999999987643

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=90.12  E-value=2.3  Score=39.38  Aligned_cols=74  Identities=12%  Similarity=0.128  Sum_probs=50.5

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHhccC---CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHH-----CCCCCChHHHHHHH
Q 007573          341 VCNAVITMYSRCGGILDSELAFRQIH---SPNLVSWNTIIAAFAQHGHYEKALIFFSQMGL-----NGFDPDGITFLSLL  412 (597)
Q Consensus       341 ~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~~~~~ll  412 (597)
                      ++..++..+..+|+.+.+...++.+.   +-+...|..++.+|.+.|+...|+..|+++.+     .|+.|...+.....
T Consensus       155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y~  234 (280)
T COG3629         155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALYE  234 (280)
T ss_pred             HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHHH
Confidence            45566777777777777777777665   45566788888888888888888887777654     45666655544443


Q ss_pred             HH
Q 007573          413 SA  414 (597)
Q Consensus       413 ~~  414 (597)
                      ..
T Consensus       235 ~~  236 (280)
T COG3629         235 EI  236 (280)
T ss_pred             HH
Confidence            33

>PRK10941 hypothetical protein; Provisional

Probab=90.04  E-value=3.5  Score=38.30  Aligned_cols=63  Identities=19%  Similarity=0.115  Sum_probs=55.4

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHhCC
Q 007573          475 VWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRVRLLMKEQG  537 (597)
Q Consensus       475 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  537 (597)
                      ..+.|-.+|.+.++++.|.++.+.++.+.|+++.-+.--+-+|.+.|.+..|..-++...+.-
T Consensus       183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~  245 (269)
T PRK10941        183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQC  245 (269)
T ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhC
Confidence            356666778999999999999999999999999888889999999999999999888877644

>PF13170 DUF4003: Protein of unknown function (DUF4003)

Probab=89.95  E-value=18  Score=34.33  Aligned_cols=135  Identities=12%  Similarity=0.207  Sum_probs=75.1

Q ss_pred             hhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhc--c----chhHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHH
Q 007573          285 AEEALRLFSGMIKMDMQPDDATLVSVFTACSA--L----QLLNEGRQSHVLVIRNGFEANVSVCNAVITMYSRCGGILDS  358 (597)
Q Consensus       285 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~--~----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A  358 (597)
                      +++.+.+++.|.+.|++-+..+|.+.......  .    .....+..+++.|.+...-.+                    
T Consensus        78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLT--------------------  137 (297)
T PF13170_consen   78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLT--------------------  137 (297)
T ss_pred             HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCcccc--------------------
Confidence            34556788888888888888777664433322  1    234456666666666542110                    


Q ss_pred             HHHHhccCCCChhhHHHHHHHHHHcCC----HHHHHHHHHHHHHCCCCCCh--HHHHHHHHHHhccCc--HHHHHHHHHH
Q 007573          359 ELAFRQIHSPNLVSWNTIIAAFAQHGH----YEKALIFFSQMGLNGFDPDG--ITFLSLLSACGHAGK--VNESMDLFEL  430 (597)
Q Consensus       359 ~~~~~~~~~~~~~~~~~li~~~~~~g~----~~~A~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~g~--~~~a~~~~~~  430 (597)
                              .++-.++..++..  ..++    .+.+..+|+.+.+.|+..+.  .....++..+.....  ...+.++++.
T Consensus       138 --------s~~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~  207 (297)
T PF13170_consen  138 --------SPEDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNA  207 (297)
T ss_pred             --------CccchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHH
Confidence                    1222233333222  1222    34566777777777766543  334444444333322  3467778888


Q ss_pred             hHHhcCCCCChHHHHHHHHH
Q 007573          431 MVKVYGIIPSSEHYTCLVDI  450 (597)
Q Consensus       431 ~~~~~~~~p~~~~~~~l~~~  450 (597)
                      +.+. ++++...+|..++-+
T Consensus       208 l~~~-~~kik~~~yp~lGlL  226 (297)
T PF13170_consen  208 LKKN-GVKIKYMHYPTLGLL  226 (297)
T ss_pred             HHHc-CCccccccccHHHHH
Confidence            8776 888887777665433

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=89.80  E-value=16  Score=33.71  Aligned_cols=59  Identities=15%  Similarity=-0.012  Sum_probs=52.3

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHh
Q 007573          477 GSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRVRLLMKE  535 (597)
Q Consensus       477 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  535 (597)
                      +.....|...|.+.+|.++.++++.++|-+...+-.+...|...|+--+|.+-++++.+
T Consensus       283 gkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~  341 (361)
T COG3947         283 GKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE  341 (361)
T ss_pred             HHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence            33445688999999999999999999999999999999999999998888888888754

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=89.75  E-value=32  Score=36.89  Aligned_cols=176  Identities=10%  Similarity=0.069  Sum_probs=110.9

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHhhcCCCCh---hHHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhcc
Q 007573          241 VTAMITGFCKVGMLENARLLFERIQPKDC---VSFNAMIAGYAQNGVAEEALRLFSGMIKMDMQPDDATLVSVFTACSAL  317 (597)
Q Consensus       241 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~  317 (597)
                      ...-++.+.+...++-|..+-+.-..+..   ........-+.+.|++++|...|-+-... +.|.     .++.-+-..
T Consensus       337 le~kL~iL~kK~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~kfLda  410 (933)
T KOG2114|consen  337 LETKLDILFKKNLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKKFLDA  410 (933)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHHhcCH
Confidence            44567777778888888887766543211   13333445567789999998888765532 2333     234445556


Q ss_pred             chhHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHhccCCCChh-hHHHHHHHHHHcCCHHHHHHHHHHH
Q 007573          318 QLLNEGRQSHVLVIRNGFEANVSVCNAVITMYSRCGGILDSELAFRQIHSPNLV-SWNTIIAAFAQHGHYEKALIFFSQM  396 (597)
Q Consensus       318 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m  396 (597)
                      ........+++.+.+.|+. +...-..|+.+|.+.++.++-.+..+........ -....+..+.+.+-.++|..+-.+.
T Consensus       411 q~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~~g~~~fd~e~al~Ilr~snyl~~a~~LA~k~  489 (933)
T KOG2114|consen  411 QRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCDKGEWFFDVETALEILRKSNYLDEAELLATKF  489 (933)
T ss_pred             HHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCCCcceeeeHHHHHHHHHHhChHHHHHHHHHHh
Confidence            6667777778888888854 4455677889999999999888888776621111 2445566666677777776665544


Q ss_pred             HHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHh
Q 007573          397 GLNGFDPDGITFLSLLSACGHAGKVNESMDLFELM  431 (597)
Q Consensus       397 ~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~  431 (597)
                      ..     +......+   +...+++++|.+++..+
T Consensus       490 ~~-----he~vl~il---le~~~ny~eAl~yi~sl  516 (933)
T KOG2114|consen  490 KK-----HEWVLDIL---LEDLHNYEEALRYISSL  516 (933)
T ss_pred             cc-----CHHHHHHH---HHHhcCHHHHHHHHhcC
Confidence            32     22333333   34567788888877644

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=89.75  E-value=32  Score=36.89  Aligned_cols=176  Identities=15%  Similarity=0.129  Sum_probs=107.3

Q ss_pred             hHHHHHHHHHhCCChhHHHHHHhhCCCCC---cchHHHHHHHHHcCCChHHHHHHHccCCCCChhhHHHHHHHHHcCCCh
Q 007573           83 TWNAIITGYWQNGFLQESKNLFQSMPVKN---IVSWNCMIAGCIDNDRIDDAFDYFQAMPERNTATYNAMISGFLKHGRL  159 (597)
Q Consensus        83 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~  159 (597)
                      +...-|..+.+...++-|+.+-+.-..+.   ....-...+-+.+.|++++|...+-+...--..+  .++.-|....+.
T Consensus       336 ~le~kL~iL~kK~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s--~Vi~kfLdaq~I  413 (933)
T KOG2114|consen  336 DLETKLDILFKKNLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEPS--EVIKKFLDAQRI  413 (933)
T ss_pred             cHHHHHHHHHHhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCChH--HHHHHhcCHHHH
Confidence            35566777888888888888876654331   1223333344567899999987776655211111  133444444444


Q ss_pred             HHHHHHHccCCC---CCchhHHHHHHHHHhCCChhHHHHHHHhcccCCc--chHHHHHHHHHcCCChHHHHHHHhhcCCC
Q 007573          160 EEATRLFEQMPR---RNVISYTAMLDGFMKKGEVDKARALSDYMSFKNV--VSWTVMITGYVKNERFCEARELFYRMPDY  234 (597)
Q Consensus       160 ~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~  234 (597)
                      .+-...++.+.+   .+...-+.|+.+|.+.++.++-.++.+... ...  .-....+..+.+.+-.++|.-+-..... 
T Consensus       414 knLt~YLe~L~~~gla~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~~fd~e~al~Ilr~snyl~~a~~LA~k~~~-  491 (933)
T KOG2114|consen  414 KNLTSYLEALHKKGLANSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEWFFDVETALEILRKSNYLDEAELLATKFKK-  491 (933)
T ss_pred             HHHHHHHHHHHHcccccchhHHHHHHHHHHhcchHHHHHHHhcCC-CcceeeeHHHHHHHHHHhChHHHHHHHHHHhcc-
Confidence            444445555443   344556778899999999988888776664 222  2245666777777777777766554432 


Q ss_pred             CCCchHHHHHHHHHHhcCCHHHHHHHHhhcCCC
Q 007573          235 DKNVFVVTAMITGFCKVGMLENARLLFERIQPK  267 (597)
Q Consensus       235 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  267 (597)
                        ...+...   .+-..+++++|++.+..++.+
T Consensus       492 --he~vl~i---lle~~~ny~eAl~yi~slp~~  519 (933)
T KOG2114|consen  492 --HEWVLDI---LLEDLHNYEEALRYISSLPIS  519 (933)
T ss_pred             --CHHHHHH---HHHHhcCHHHHHHHHhcCCHH
Confidence              2233333   334567899999999888764

>TIGR02270 conserved hypothetical protein

Probab=89.67  E-value=24  Score=35.31  Aligned_cols=128  Identities=9%  Similarity=-0.020  Sum_probs=54.9

Q ss_pred             HHHHHccCCCCChhhHHHHHHHHHcCCChHHHHHHHccCCCCCchhHHHHHHHHHhCCChhHHHHHHHhcccCCcchHHH
Q 007573          131 AFDYFQAMPERNTATYNAMISGFLKHGRLEEATRLFEQMPRRNVISYTAMLDGFMKKGEVDKARALSDYMSFKNVVSWTV  210 (597)
Q Consensus       131 A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~  210 (597)
                      ...+.+.+..++..+....+.++.+.+.......+..-...+++......+.++...+. +....+..-+..+|...-..
T Consensus        88 ~~~L~~~L~d~~~~vr~aaa~ALg~i~~~~a~~~L~~~L~~~~p~vR~aal~al~~r~~-~~~~~L~~~L~d~d~~Vra~  166 (410)
T TIGR02270        88 LRSVLAVLQAGPEGLCAGIQAALGWLGGRQAEPWLEPLLAASEPPGRAIGLAALGAHRH-DPGPALEAALTHEDALVRAA  166 (410)
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHhcCCchHHHHHHHHHhcCCChHHHHHHHHHHHhhcc-ChHHHHHHHhcCCCHHHHHH
Confidence            33444444445555556666666666555555444444444454444444444443331 11112222223334444444


Q ss_pred             HHHHHHcCCChHHHHHHHhhcCCCCCCchHHHHHHHHHHhcCCHHHHHHHHh
Q 007573          211 MITGYVKNERFCEARELFYRMPDYDKNVFVVTAMITGFCKVGMLENARLLFE  262 (597)
Q Consensus       211 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~  262 (597)
                      -+.++...+..+..-. +..+. ..++..+-..-+.+....|. ++|...+.
T Consensus       167 A~raLG~l~~~~a~~~-L~~al-~d~~~~VR~aA~~al~~lG~-~~A~~~l~  215 (410)
T TIGR02270       167 ALRALGELPRRLSEST-LRLYL-RDSDPEVRFAALEAGLLAGS-RLAWGVCR  215 (410)
T ss_pred             HHHHHHhhccccchHH-HHHHH-cCCCHHHHHHHHHHHHHcCC-HhHHHHHH
Confidence            4444444444322222 22221 12444444444555555555 44444433

Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=89.56  E-value=2.4  Score=36.65  Aligned_cols=93  Identities=13%  Similarity=0.028  Sum_probs=62.6

Q ss_pred             hHHHHHHHHHHhhcCCHHHHHHHHhhCC---CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--CCCc----h
Q 007573          441 SEHYTCLVDILSRAGQLEKAWQITQGMP---FEAD--TGVWGSLLAACVINLNVELGELAAKKMRELDP--QNSA----V  509 (597)
Q Consensus       441 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p--~~~~----~  509 (597)
                      ...+..+++.|.+.|+.++|.+.+.++.   ..|.  ...+-.++..+...+++..+...+.++...-.  .+..    .
T Consensus        36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrl  115 (177)
T PF10602_consen   36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRL  115 (177)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence            3456677888888888888888888876   2222  34567777888888888888888888876422  2211    1


Q ss_pred             HHHHHHHHHhcCCcHHHHHHHHHH
Q 007573          510 YVMLSNLYAAAGMWRDVTRVRLLM  533 (597)
Q Consensus       510 ~~~l~~~~~~~g~~~~A~~~~~~~  533 (597)
                      -..-+-.+...+++.+|.+.|-..
T Consensus       116 k~~~gL~~l~~r~f~~AA~~fl~~  139 (177)
T PF10602_consen  116 KVYEGLANLAQRDFKEAAELFLDS  139 (177)
T ss_pred             HHHHHHHHHHhchHHHHHHHHHcc
Confidence            223344455678888888887654

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=89.38  E-value=0.97  Score=27.71  Aligned_cols=26  Identities=12%  Similarity=-0.117  Sum_probs=12.0

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007573          475 VWGSLLAACVINLNVELGELAAKKMR  500 (597)
Q Consensus       475 ~~~~l~~~~~~~g~~~~a~~~~~~~~  500 (597)
                      +++.|...|...|++++|+.++++++
T Consensus         4 ~~~~la~~~~~~g~~~~A~~~~~~al   29 (42)
T PF13374_consen    4 ALNNLANAYRAQGRYEEALELLEEAL   29 (42)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhcchhhHHHHHHH
Confidence            34444444444455555555444444

>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=89.25  E-value=17  Score=33.10  Aligned_cols=237  Identities=14%  Similarity=0.143  Sum_probs=126.5

Q ss_pred             CCHHHHHHHHhhcCC----C---ChhHHHHHHHHHHHcCChhHHHHHHHHhHH---CCC--CCCHHHHHHHHHHHhccch
Q 007573          252 GMLENARLLFERIQP----K---DCVSFNAMIAGYAQNGVAEEALRLFSGMIK---MDM--QPDDATLVSVFTACSALQL  319 (597)
Q Consensus       252 g~~~~A~~~~~~~~~----~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~g~--~p~~~~~~~ll~~~~~~~~  319 (597)
                      ...++|+.-|+++.+    +   .-.+.-.+|..+.+.+++++.+..|.+|+.   ..+  .-+....++++...+...+
T Consensus        41 ~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~  120 (440)
T KOG1464|consen   41 DEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKN  120 (440)
T ss_pred             cCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhh
Confidence            345556655555432    1   122444566666777777777766666643   111  1223344555554444444


Q ss_pred             hHHHHHHHHHHHHh-----CCCCcccHHHHHHHHHHhcCCHHHHHHHHhccCC--------CC-------hhhHHHHHHH
Q 007573          320 LNEGRQSHVLVIRN-----GFEANVSVCNAVITMYSRCGGILDSELAFRQIHS--------PN-------LVSWNTIIAA  379 (597)
Q Consensus       320 ~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~-------~~~~~~li~~  379 (597)
                      .+.....++.-++.     +-..--.+-..|...|...|.+.+..++++++..        .|       ...|..-|..
T Consensus       121 m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQm  200 (440)
T KOG1464|consen  121 MDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQM  200 (440)
T ss_pred             hHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhh
Confidence            44444443332211     1111222334566777777888888777777651        11       2356667788


Q ss_pred             HHHcCCHHHHHHHHHHHHHC-CCCCChHHHHHHHHHH-----hccCcHHHHHHHHHHhHHhcCCCCCh-----HHHHHHH
Q 007573          380 FAQHGHYEKALIFFSQMGLN-GFDPDGITFLSLLSAC-----GHAGKVNESMDLFELMVKVYGIIPSS-----EHYTCLV  448 (597)
Q Consensus       380 ~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~ll~~~-----~~~g~~~~a~~~~~~~~~~~~~~p~~-----~~~~~l~  448 (597)
                      |....+-.+-..++++...- ..-|.+.... +++-|     .+.|.+++|..-|-++.+.+.-.-++     --|..|.
T Consensus       201 YT~qKnNKkLK~lYeqalhiKSAIPHPlImG-vIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLA  279 (440)
T KOG1464|consen  201 YTEQKNNKKLKALYEQALHIKSAIPHPLIMG-VIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLA  279 (440)
T ss_pred             hhhhcccHHHHHHHHHHHHhhccCCchHHHh-HHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHH
Confidence            88888877777788776542 2345554433 44444     45688888876555555544332222     2255566


Q ss_pred             HHHhhcC----CHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 007573          449 DILSRAG----QLEKAWQITQGMPFEADTGVWGSLLAACVINLNVELGEL  494 (597)
Q Consensus       449 ~~~~~~g----~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~  494 (597)
                      +++.+.|    +..+|.-+    ...|.......|+.+|... +..+-++
T Consensus       280 NMLmkS~iNPFDsQEAKPy----KNdPEIlAMTnlv~aYQ~N-dI~eFE~  324 (440)
T KOG1464|consen  280 NMLMKSGINPFDSQEAKPY----KNDPEILAMTNLVAAYQNN-DIIEFER  324 (440)
T ss_pred             HHHHHcCCCCCcccccCCC----CCCHHHHHHHHHHHHHhcc-cHHHHHH
Confidence            6776665    22222110    1345566778888888654 4333333

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=89.20  E-value=0.62  Score=27.12  Aligned_cols=30  Identities=20%  Similarity=0.205  Sum_probs=25.8

Q ss_pred             chHHHHHHHHHhcCCcHHHHHHHHHHHhCC
Q 007573          508 AVYVMLSNLYAAAGMWRDVTRVRLLMKEQG  537 (597)
Q Consensus       508 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  537 (597)
                      .+|..++.+|...|++++|+..+++..+..
T Consensus         2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~   31 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGDYEEALEYYQRALELD   31 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence            468899999999999999999999988754

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=89.16  E-value=1.2  Score=41.56  Aligned_cols=94  Identities=13%  Similarity=0.081  Sum_probs=61.6

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcC
Q 007573          377 IAAFAQHGHYEKALIFFSQMGLNGFDP-DGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAG  455 (597)
Q Consensus       377 i~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g  455 (597)
                      ..-|.++|.+++|++.|.+....  .| |++++..-..+|.+...+..|..-...+....  ..-...|..-+.+-...|
T Consensus       104 GN~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd--~~Y~KAYSRR~~AR~~Lg  179 (536)
T KOG4648|consen  104 GNTYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD--KLYVKAYSRRMQARESLG  179 (536)
T ss_pred             hhhhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh--HHHHHHHHHHHHHHHHHh
Confidence            35688999999999999887754  56 88899888899999888887776665554320  001223333333334456


Q ss_pred             CHHHHHHHHhhCC-CCCCHH
Q 007573          456 QLEKAWQITQGMP-FEADTG  474 (597)
Q Consensus       456 ~~~~A~~~~~~~~-~~p~~~  474 (597)
                      ...+|.+-++... .+|+..
T Consensus       180 ~~~EAKkD~E~vL~LEP~~~  199 (536)
T KOG4648|consen  180 NNMEAKKDCETVLALEPKNI  199 (536)
T ss_pred             hHHHHHHhHHHHHhhCcccH
Confidence            6666666665544 667643

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=89.12  E-value=13  Score=31.51  Aligned_cols=127  Identities=13%  Similarity=0.083  Sum_probs=75.2

Q ss_pred             hHHHHHHHHHhCCChhHHHHHHHhcccCCcchHHHHH-----HHHHcCCChHHHHHHHhhcCCCCCCchHHHHH-----H
Q 007573          176 SYTAMLDGFMKKGEVDKARALSDYMSFKNVVSWTVMI-----TGYVKNERFCEARELFYRMPDYDKNVFVVTAM-----I  245 (597)
Q Consensus       176 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ll-----~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l-----~  245 (597)
                      .|..-++ +.+.+..++|+.-|..+.+.+.-.|-.|.     ....+.|+-..|...|+++-...+-+....-+     .
T Consensus        61 ~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa  139 (221)
T COG4649          61 AFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAA  139 (221)
T ss_pred             HHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHH
Confidence            3444333 34556667777777777665555544433     23456777777777777776644433333222     2


Q ss_pred             HHHHhcCCHHHHHHHHhhcCCC-Ch---hHHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCC
Q 007573          246 TGFCKVGMLENARLLFERIQPK-DC---VSFNAMIAGYAQNGVAEEALRLFSGMIKMDMQPD  303 (597)
Q Consensus       246 ~~~~~~g~~~~A~~~~~~~~~~-~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~  303 (597)
                      -.+...|.+++...-.+.+..+ ++   ..-..|.-+-.+.|++.+|.+.|.++......|.
T Consensus       140 ~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~apr  201 (221)
T COG4649         140 YLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAPR  201 (221)
T ss_pred             HHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCcH
Confidence            2345677777776666655432 22   3445666677778888888888887776544443

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=89.05  E-value=0.9  Score=26.05  Aligned_cols=25  Identities=12%  Similarity=0.121  Sum_probs=11.6

Q ss_pred             HHHHHHHHhcCCcHHHHHHHHHHHh
Q 007573          511 VMLSNLYAAAGMWRDVTRVRLLMKE  535 (597)
Q Consensus       511 ~~l~~~~~~~g~~~~A~~~~~~~~~  535 (597)
                      ..++.++.+.|++++|.+.++++.+
T Consensus         4 ~~~a~~~~~~g~~~~A~~~~~~~~~   28 (33)
T PF13174_consen    4 YRLARCYYKLGDYDEAIEYFQRLIK   28 (33)
T ss_dssp             HHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHccCHHHHHHHHHHHHH
Confidence            3444444444444444444444443

>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional

Probab=89.04  E-value=7.1  Score=38.49  Aligned_cols=88  Identities=13%  Similarity=0.019  Sum_probs=51.7

Q ss_pred             HHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcHHHH
Q 007573          450 ILSRAGQLEKAWQITQGMP--FEADTGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVT  527 (597)
Q Consensus       450 ~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~  527 (597)
                      .....|+++.+...+....  +.....+...++......|++++|....+.++..+.+++.+....+-.-...|-+|++.
T Consensus       332 i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~  411 (831)
T PRK15180        332 IFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSY  411 (831)
T ss_pred             HHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccCChhheeeecccHHHHhHHHHHH
Confidence            3445566666666655443  23344455666666666667777777776666665555554444444445556667777


Q ss_pred             HHHHHHHhCC
Q 007573          528 RVRLLMKEQG  537 (597)
Q Consensus       528 ~~~~~~~~~~  537 (597)
                      -.|+++....
T Consensus       412 ~~wk~~~~~~  421 (831)
T PRK15180        412 HYWKRVLLLN  421 (831)
T ss_pred             HHHHHHhccC
Confidence            7777665433

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=88.61  E-value=0.66  Score=25.19  Aligned_cols=24  Identities=17%  Similarity=0.101  Sum_probs=17.5

Q ss_pred             chHHHHHHHHHhcCCcHHHHHHHH
Q 007573          508 AVYVMLSNLYAAAGMWRDVTRVRL  531 (597)
Q Consensus       508 ~~~~~l~~~~~~~g~~~~A~~~~~  531 (597)
                      .....++.++...|++++|..+++
T Consensus         2 ~a~~~la~~~~~~G~~~eA~~~l~   25 (26)
T PF07721_consen    2 RARLALARALLAQGDPDEAERLLR   25 (26)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHh
Confidence            345677778888888888877765

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=88.33  E-value=7  Score=31.44  Aligned_cols=71  Identities=14%  Similarity=0.002  Sum_probs=43.2

Q ss_pred             CCChHHHHHHHHHHhhcCCHHH---HHHHHhhCC--CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 007573          438 IPSSEHYTCLVDILSRAGQLEK---AWQITQGMP--FEAD--TGVWGSLLAACVINLNVELGELAAKKMRELDPQNSA  508 (597)
Q Consensus       438 ~p~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~--~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~  508 (597)
                      .++..+--.+..++.+..+.++   -..+++.+.  ..|+  .....-|.-++.+.|+++.+.++.+..++.+|+|..
T Consensus        29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Q  106 (149)
T KOG3364|consen   29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQ  106 (149)
T ss_pred             cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHH
Confidence            4556666667777777665443   444555543  2232  223344455577777888888888888777777654

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=88.06  E-value=1  Score=27.65  Aligned_cols=29  Identities=21%  Similarity=0.210  Sum_probs=24.9

Q ss_pred             chHHHHHHHHHhcCCcHHHHHHHHHHHhC
Q 007573          508 AVYVMLSNLYAAAGMWRDVTRVRLLMKEQ  536 (597)
Q Consensus       508 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  536 (597)
                      .++..++.+|...|++++|.+++++..+.
T Consensus         3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~   31 (42)
T PF13374_consen    3 SALNNLANAYRAQGRYEEALELLEEALEI   31 (42)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence            46789999999999999999999998763

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=88.01  E-value=1.2  Score=37.69  Aligned_cols=33  Identities=15%  Similarity=0.228  Sum_probs=22.1

Q ss_pred             HHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcC
Q 007573          489 VELGELAAKKMRELDPQNSAVYVMLSNLYAAAG  521 (597)
Q Consensus       489 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g  521 (597)
                      +++|+.-|++++.++|+...++..++++|...+
T Consensus        51 iedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A   83 (186)
T PF06552_consen   51 IEDAISKFEEALKINPNKHDALWCLGNAYTSLA   83 (186)
T ss_dssp             HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Confidence            455666677777778877777777777777655

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=88.00  E-value=0.76  Score=26.39  Aligned_cols=31  Identities=6%  Similarity=-0.122  Sum_probs=26.7

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 007573          476 WGSLLAACVINLNVELGELAAKKMRELDPQN  506 (597)
Q Consensus       476 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~  506 (597)
                      +-.++.++...|+.++|...++++++..|++
T Consensus         3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s   33 (33)
T PF13174_consen    3 LYRLARCYYKLGDYDEAIEYFQRLIKRYPDS   33 (33)
T ss_dssp             HHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence            4456778889999999999999999999874

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=87.93  E-value=52  Score=37.11  Aligned_cols=180  Identities=13%  Similarity=0.061  Sum_probs=88.4

Q ss_pred             HHHccCCCCChhhHHHHHHHHHcCCChHHHHHHHccCCCCCchhHHHHHHHHHhCCCh-hHHHHHHHhcccCCcchHHHH
Q 007573          133 DYFQAMPERNTATYNAMISGFLKHGRLEEATRLFEQMPRRNVISYTAMLDGFMKKGEV-DKARALSDYMSFKNVVSWTVM  211 (597)
Q Consensus       133 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~~~~~~~~l  211 (597)
                      .+.+.+..+|+.+-...+..+.+.+..+....+...+..+|...-...+.++.+.+.. .....+...+..+|...-...
T Consensus       625 ~L~~~L~D~d~~VR~~Av~~L~~~~~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~~d~~VR~~A  704 (897)
T PRK13800        625 ELAPYLADPDPGVRRTAVAVLTETTPPGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPPAPALRDHLGSPDPVVRAAA  704 (897)
T ss_pred             HHHHHhcCCCHHHHHHHHHHHhhhcchhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCchHHHHHHhcCCCHHHHHHH
Confidence            3444444666666666666666666544333344444445554444444444443221 111222233334555555555


Q ss_pred             HHHHHcCCChHHHHHHHhhcCCCCCCchHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChhH-HHH
Q 007573          212 ITGYVKNERFCEARELFYRMPDYDKNVFVVTAMITGFCKVGMLENARLLFERIQPKDCVSFNAMIAGYAQNGVAEE-ALR  290 (597)
Q Consensus       212 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-A~~  290 (597)
                      +.++...+..+ ...+...+..  ++..+....+.++.+.+..+.   +...+..++...-...+.++...+..+. +..
T Consensus       705 ~~aL~~~~~~~-~~~l~~~L~D--~d~~VR~~Av~aL~~~~~~~~---l~~~l~D~~~~VR~~aa~aL~~~~~~~~~~~~  778 (897)
T PRK13800        705 LDVLRALRAGD-AALFAAALGD--PDHRVRIEAVRALVSVDDVES---VAGAATDENREVRIAVAKGLATLGAGGAPAGD  778 (897)
T ss_pred             HHHHHhhccCC-HHHHHHHhcC--CCHHHHHHHHHHHhcccCcHH---HHHHhcCCCHHHHHHHHHHHHHhccccchhHH
Confidence            55555433211 1223333333  566666666666666554432   3334455666666666666666665432 344


Q ss_pred             HHHHhHHCCCCCCHHHHHHHHHHHhccchhH
Q 007573          291 LFSGMIKMDMQPDDATLVSVFTACSALQLLN  321 (597)
Q Consensus       291 ~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~  321 (597)
                      .+..+.+   .+|...-...+.++...+..+
T Consensus       779 ~L~~ll~---D~d~~VR~aA~~aLg~~g~~~  806 (897)
T PRK13800        779 AVRALTG---DPDPLVRAAALAALAELGCPP  806 (897)
T ss_pred             HHHHHhc---CCCHHHHHHHHHHHHhcCCcc
Confidence            4555543   344444455555555555443

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=87.72  E-value=3.6  Score=27.10  Aligned_cols=49  Identities=10%  Similarity=-0.041  Sum_probs=37.7

Q ss_pred             HHHHHHHHHhcCCcHHHHHHHHHHHhCCCccCCCeeEEEECCEEEEEEeCCCCCcchHHHHHHHHHHHHHHhhcC
Q 007573          510 YVMLSNLYAAAGMWRDVTRVRLLMKEQGVTKQCAYSWIEIGNKVHYFLGGDMSHPCIDKIHLELKRASVQMKSVD  584 (597)
Q Consensus       510 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~  584 (597)
                      +..++-++.+.|++++|.+..+.+.+.                          +|...++...-+.+..++++.|
T Consensus         4 lY~lAig~ykl~~Y~~A~~~~~~lL~~--------------------------eP~N~Qa~~L~~~i~~~i~kdg   52 (53)
T PF14853_consen    4 LYYLAIGHYKLGEYEKARRYCDALLEI--------------------------EPDNRQAQSLKELIEDKIQKDG   52 (53)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHHHH--------------------------TTS-HHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHhh--------------------------CCCcHHHHHHHHHHHHHHhccC
Confidence            456788899999999999999998873                          6777777777777777777654

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=87.65  E-value=7.5  Score=33.66  Aligned_cols=101  Identities=15%  Similarity=0.055  Sum_probs=56.5

Q ss_pred             hccCcHHHHHHHHHHhHHhcCCCCC---hHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCCC-HHHHHHHHHHHHhcCCHH
Q 007573          416 GHAGKVNESMDLFELMVKVYGIIPS---SEHYTCLVDILSRAGQLEKAWQITQGMP-FEAD-TGVWGSLLAACVINLNVE  490 (597)
Q Consensus       416 ~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~g~~~  490 (597)
                      ...|++++|..-|..+.....-.+.   ...|..-..++.+.+.++.|.+-..+.. +.|. ...+..-..+|.+...++
T Consensus       106 F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~e  185 (271)
T KOG4234|consen  106 FKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKYE  185 (271)
T ss_pred             hhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHH
Confidence            3455555555555555442111111   2233334455566677777766555443 4443 223333445677777888


Q ss_pred             HHHHHHHHHHhcCCCCCchHHHHHHH
Q 007573          491 LGELAAKKMRELDPQNSAVYVMLSNL  516 (597)
Q Consensus       491 ~a~~~~~~~~~~~p~~~~~~~~l~~~  516 (597)
                      .|+.-|+++++.+|....+....+.+
T Consensus       186 ealeDyKki~E~dPs~~ear~~i~rl  211 (271)
T KOG4234|consen  186 EALEDYKKILESDPSRREAREAIARL  211 (271)
T ss_pred             HHHHHHHHHHHhCcchHHHHHHHHhc
Confidence            99999999999988865544444433

>KOG4570 consensus Uncharacterized conserved protein [Function unknown]

Probab=87.00  E-value=6.7  Score=36.50  Aligned_cols=101  Identities=18%  Similarity=0.196  Sum_probs=71.9

Q ss_pred             hCCCCcccHHHHHHHHHHhcCCHHHHHHHHhccC-CCChh-----hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChH
Q 007573          333 NGFEANVSVCNAVITMYSRCGGILDSELAFRQIH-SPNLV-----SWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGI  406 (597)
Q Consensus       333 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~-----~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~  406 (597)
                      .|.+....+...++..-....++++++..+-++. .|+..     +-...+..+. .=++++++.++..=++-|+-||..
T Consensus        58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlll-ky~pq~~i~~l~npIqYGiF~dqf  136 (418)
T KOG4570|consen   58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQF  136 (418)
T ss_pred             cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHH-ccChHHHHHHHhCcchhccccchh
Confidence            3555566666666766666778888888777665 22211     1112223222 346779999998888999999999


Q ss_pred             HHHHHHHHHhccCcHHHHHHHHHHhHHh
Q 007573          407 TFLSLLSACGHAGKVNESMDLFELMVKV  434 (597)
Q Consensus       407 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~  434 (597)
                      ++..++..+.+.+++.+|.++.-.|...
T Consensus       137 ~~c~l~D~flk~~n~~~aa~vvt~~~~q  164 (418)
T KOG4570|consen  137 TFCLLMDSFLKKENYKDAASVVTEVMMQ  164 (418)
T ss_pred             hHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence            9999999999999999988887776654

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=86.87  E-value=50  Score=35.79  Aligned_cols=185  Identities=15%  Similarity=0.140  Sum_probs=87.4

Q ss_pred             HhcCCHHHHHHHHhccC----CCCh-------hhHHHHHH-HHHHcCCHHHHHHHHHHHHHC----CCCCChHHHHHHHH
Q 007573          350 SRCGGILDSELAFRQIH----SPNL-------VSWNTIIA-AFAQHGHYEKALIFFSQMGLN----GFDPDGITFLSLLS  413 (597)
Q Consensus       350 ~~~g~~~~A~~~~~~~~----~~~~-------~~~~~li~-~~~~~g~~~~A~~~~~~m~~~----g~~p~~~~~~~ll~  413 (597)
                      ....++.+|..++.++.    .|+.       ..|+.+-. .....|++++|.++.+.....    -..+....+..+..
T Consensus       426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~  505 (894)
T COG2909         426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE  505 (894)
T ss_pred             HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence            33456666666655443    2211       13444322 223467777777777666543    12223444555556


Q ss_pred             HHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHH-----HHHHhhcCCH--HHHHHHHhhCC-----CCCC----HHHHH
Q 007573          414 ACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCL-----VDILSRAGQL--EKAWQITQGMP-----FEAD----TGVWG  477 (597)
Q Consensus       414 ~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l-----~~~~~~~g~~--~~A~~~~~~~~-----~~p~----~~~~~  477 (597)
                      +..-.|++++|..+.....+. .-.-+...+...     ...+...|..  ++.+..+....     .+|-    ..+..
T Consensus       506 a~~~~G~~~~Al~~~~~a~~~-a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~  584 (894)
T COG2909         506 AAHIRGELTQALALMQQAEQM-ARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA  584 (894)
T ss_pred             HHHHhchHHHHHHHHHHHHHH-HHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence            666677777777666555443 112232222222     2234455522  22222232221     1221    22334


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhc----CCCCC---chHHHHHHHHHhcCCcHHHHHHHHHHHhCCC
Q 007573          478 SLLAACVINLNVELGELAAKKMREL----DPQNS---AVYVMLSNLYAAAGMWRDVTRVRLLMKEQGV  538 (597)
Q Consensus       478 ~l~~~~~~~g~~~~a~~~~~~~~~~----~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  538 (597)
                      .++.++.+   .+.+..-....++.    .|.+.   ..+..|+.++...|+.++|...++++.....
T Consensus       585 ~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~  649 (894)
T COG2909         585 QLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLL  649 (894)
T ss_pred             HHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhc
Confidence            44444333   33333333333332    23321   1123677777778888888877777766443

>smart00028 TPR Tetratricopeptide repeats

Probab=86.82  E-value=1.4  Score=24.53  Aligned_cols=29  Identities=24%  Similarity=0.032  Sum_probs=16.0

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 007573          476 WGSLLAACVINLNVELGELAAKKMRELDP  504 (597)
Q Consensus       476 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~p  504 (597)
                      |..+...+...|+++.|...++++++..|
T Consensus         4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~~~   32 (34)
T smart00028        4 LYNLGNAYLKLGDYDEALEYYEKALELDP   32 (34)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence            44444555555556666666555555544

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=85.99  E-value=10  Score=38.74  Aligned_cols=124  Identities=15%  Similarity=-0.020  Sum_probs=70.3

Q ss_pred             CCChhHHHHHHHhcccCCcchHHHHHHHHHcCCChHHHHHHHhhcCCCCCCchHHHHHHHHHHhcCCHHHHHHHHhhcCC
Q 007573          187 KGEVDKARALSDYMSFKNVVSWTVMITGYVKNERFCEARELFYRMPDYDKNVFVVTAMITGFCKVGMLENARLLFERIQP  266 (597)
Q Consensus       187 ~g~~~~A~~~~~~m~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  266 (597)
                      .|+++.|..++..+.   ....+.++..+.+.|-.++|+++-       +|..-   -.....+.|+++.|.++..+.  
T Consensus       599 rrd~~~a~~vLp~I~---k~~rt~va~Fle~~g~~e~AL~~s-------~D~d~---rFelal~lgrl~iA~~la~e~--  663 (794)
T KOG0276|consen  599 RRDLEVADGVLPTIP---KEIRTKVAHFLESQGMKEQALELS-------TDPDQ---RFELALKLGRLDIAFDLAVEA--  663 (794)
T ss_pred             hccccccccccccCc---hhhhhhHHhHhhhccchHhhhhcC-------CChhh---hhhhhhhcCcHHHHHHHHHhh--
Confidence            455555555433332   223344555555666666655432       22211   123345667777777766543  


Q ss_pred             CChhHHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhccchhHHHHHHHHHHHHhC
Q 007573          267 KDCVSFNAMIAGYAQNGVAEEALRLFSGMIKMDMQPDDATLVSVFTACSALQLLNEGRQSHVLVIRNG  334 (597)
Q Consensus       267 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~  334 (597)
                      .+..-|..|..+....+++..|.+.|.+...         |..++-.+...|+.+....+-....+.|
T Consensus       664 ~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g  722 (794)
T KOG0276|consen  664 NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQG  722 (794)
T ss_pred             cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhc
Confidence            3455688888888888888888888876554         3355555556666555555444444444

>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va

Probab=85.75  E-value=5.7  Score=29.75  Aligned_cols=61  Identities=13%  Similarity=0.141  Sum_probs=43.7

Q ss_pred             HHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHH
Q 007573          386 YEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLV  448 (597)
Q Consensus       386 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~  448 (597)
                      .-++.+-++.+....+-|++......+++|.+.+++..|.++|+.+..+.+  .+...|..++
T Consensus        23 ~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~--~~~~~y~~~l   83 (103)
T cd00923          23 GWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCG--AHKEIYPYIL   83 (103)
T ss_pred             HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--CchhhHHHHH
Confidence            335556666666667888888899999999999999999999887764322  2444565554

Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=85.47  E-value=3.3  Score=36.82  Aligned_cols=51  Identities=14%  Similarity=0.074  Sum_probs=23.0

Q ss_pred             HHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcHHHHHHHHHH
Q 007573          483 CVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRVRLLM  533 (597)
Q Consensus       483 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  533 (597)
                      +.+..+++.+..--++++++.|+.......++..+.....+++|+..+.+.
T Consensus        54 hlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra  104 (284)
T KOG4642|consen   54 HLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQRA  104 (284)
T ss_pred             HHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHHHH
Confidence            333444444444444444444444444444444444444444444444444

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=85.44  E-value=2  Score=24.85  Aligned_cols=29  Identities=17%  Similarity=0.220  Sum_probs=25.7

Q ss_pred             chHHHHHHHHHhcCCcHHHHHHHHHHHhC
Q 007573          508 AVYVMLSNLYAAAGMWRDVTRVRLLMKEQ  536 (597)
Q Consensus       508 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  536 (597)
                      .+|..++.+|...|++++|.+.+++..+.
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~   30 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALEL   30 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            36889999999999999999999998763

...

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=85.04  E-value=15  Score=37.55  Aligned_cols=124  Identities=19%  Similarity=0.099  Sum_probs=65.2

Q ss_pred             cCCChHHHHHHHccCCCCCchhHHHHHHHHHhCCChhHHHHHHHhcccCCcchHHHHHHHHHcCCChHHHHHHHhhcCCC
Q 007573          155 KHGRLEEATRLFEQMPRRNVISYTAMLDGFMKKGEVDKARALSDYMSFKNVVSWTVMITGYVKNERFCEARELFYRMPDY  234 (597)
Q Consensus       155 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~  234 (597)
                      -.|+++.|..++..+++   ...+.++..+.++|..++|+++     .+|....   .....+.|+++.|.++..+.   
T Consensus       598 mrrd~~~a~~vLp~I~k---~~rt~va~Fle~~g~~e~AL~~-----s~D~d~r---Felal~lgrl~iA~~la~e~---  663 (794)
T KOG0276|consen  598 LRRDLEVADGVLPTIPK---EIRTKVAHFLESQGMKEQALEL-----STDPDQR---FELALKLGRLDIAFDLAVEA---  663 (794)
T ss_pred             hhccccccccccccCch---hhhhhHHhHhhhccchHhhhhc-----CCChhhh---hhhhhhcCcHHHHHHHHHhh---
Confidence            44566666665555542   2334555666666666666654     2232211   12233556666666655543   


Q ss_pred             CCCchHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChhHHHHHHHHhHHC
Q 007573          235 DKNVFVVTAMITGFCKVGMLENARLLFERIQPKDCVSFNAMIAGYAQNGVAEEALRLFSGMIKM  298 (597)
Q Consensus       235 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  298 (597)
                       .+..-|..|.++....|++..|.+.|.+...     |..|+-.+...|+.+....+-....+.
T Consensus       664 -~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d-----~~~LlLl~t~~g~~~~l~~la~~~~~~  721 (794)
T KOG0276|consen  664 -NSEVKWRQLGDAALSAGELPLASECFLRARD-----LGSLLLLYTSSGNAEGLAVLASLAKKQ  721 (794)
T ss_pred             -cchHHHHHHHHHHhhcccchhHHHHHHhhcc-----hhhhhhhhhhcCChhHHHHHHHHHHhh
Confidence             2344466666666666666666666665443     445555555555555444444333333

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=84.94  E-value=2.7  Score=27.67  Aligned_cols=32  Identities=16%  Similarity=0.094  Sum_probs=25.7

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch
Q 007573          478 SLLAACVINLNVELGELAAKKMRELDPQNSAV  509 (597)
Q Consensus       478 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~  509 (597)
                      .+.-++.+.|++++|.+..+.+++.+|++..+
T Consensus         6 ~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa   37 (53)
T PF14853_consen    6 YLAIGHYKLGEYEKARRYCDALLEIEPDNRQA   37 (53)
T ss_dssp             HHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHH
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHH
Confidence            45567889999999999999999999998654

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=84.88  E-value=6.2  Score=34.41  Aligned_cols=76  Identities=17%  Similarity=0.125  Sum_probs=52.2

Q ss_pred             HhhcCCHHHHHHHHhhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----CCchHHHHHHHHHhcCCcH
Q 007573          451 LSRAGQLEKAWQITQGMPFEA--DTGVWGSLLAACVINLNVELGELAAKKMRELDPQ----NSAVYVMLSNLYAAAGMWR  524 (597)
Q Consensus       451 ~~~~g~~~~A~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~  524 (597)
                      ..+.|+ ++|.+.|-++...|  +....-..+..|....|.++++.++-+++++.++    |+.++..|+.+|.+.|+++
T Consensus       117 Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e  195 (203)
T PF11207_consen  117 WSRFGD-QEALRRFLQLEGTPELETAELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYE  195 (203)
T ss_pred             hhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchh
Confidence            345555 56666666665233  2333333344444577999999999999987433    4888999999999999998


Q ss_pred             HHH
Q 007573          525 DVT  527 (597)
Q Consensus       525 ~A~  527 (597)
                      .|-
T Consensus       196 ~AY  198 (203)
T PF11207_consen  196 QAY  198 (203)
T ss_pred             hhh
Confidence            874

>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]

Probab=84.77  E-value=1.1e+02  Score=37.58  Aligned_cols=144  Identities=12%  Similarity=0.018  Sum_probs=84.7

Q ss_pred             HHHHHHHhCCChhHHHHHHHhc----ccCC--cchHHHHHHHHHcCCChHHHHHHHhh-cCCCCCCchHHHHHHHHHHhc
Q 007573          179 AMLDGFMKKGEVDKARALSDYM----SFKN--VVSWTVMITGYVKNERFCEARELFYR-MPDYDKNVFVVTAMITGFCKV  251 (597)
Q Consensus       179 ~li~~~~~~g~~~~A~~~~~~m----~~~~--~~~~~~ll~~~~~~g~~~~a~~~~~~-~~~~~~~~~~~~~l~~~~~~~  251 (597)
                      .+..+-.+.+.+.+|+..+++-    .+.+  ..-|..+...|+..+++|....+... ...  |   .....|-.....
T Consensus      1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~--~---sl~~qil~~e~~ 1462 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFAD--P---SLYQQILEHEAS 1462 (2382)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcC--c---cHHHHHHHHHhh
Confidence            5566667788888888888873    2221  22344444588888888877777663 221  2   223344556667


Q ss_pred             CCHHHHHHHHhhcCCCC---hhHHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCHHHHH-HHHHHHhccchhHHHHHHH
Q 007573          252 GMLENARLLFERIQPKD---CVSFNAMIAGYAQNGVAEEALRLFSGMIKMDMQPDDATLV-SVFTACSALQLLNEGRQSH  327 (597)
Q Consensus       252 g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~-~ll~~~~~~~~~~~a~~~~  327 (597)
                      |++..|...|+.+...+   ..+++-++......|.++.++...+-.... ..+....++ .-+.+--+.++++.....+
T Consensus      1463 g~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~e~~l 1541 (2382)
T KOG0890|consen 1463 GNWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLLESYL 1541 (2382)
T ss_pred             ccHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhhhhhh
Confidence            88989999998887643   346777777777777777776654443332 122222222 2223334556666665554


Q ss_pred             H
Q 007573          328 V  328 (597)
Q Consensus       328 ~  328 (597)
                      .
T Consensus      1542 ~ 1542 (2382)
T KOG0890|consen 1542 S 1542 (2382)
T ss_pred             h
Confidence            4

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=84.19  E-value=12  Score=32.05  Aligned_cols=63  Identities=16%  Similarity=0.139  Sum_probs=37.8

Q ss_pred             CCCC-HHHHHHHHHHHHhcC-----------CHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHhC
Q 007573          469 FEAD-TGVWGSLLAACVINL-----------NVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRVRLLMKEQ  536 (597)
Q Consensus       469 ~~p~-~~~~~~l~~~~~~~g-----------~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  536 (597)
                      +.|+ ..++..++.++...+           .+++|...|+++...+|.+.. |..-+.+.      ++|-+++.++.+.
T Consensus        64 I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~-Y~ksLe~~------~kap~lh~e~~~~  136 (186)
T PF06552_consen   64 INPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNEL-YRKSLEMA------AKAPELHMEIHKQ  136 (186)
T ss_dssp             H-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HH-HHHHHHHH------HTHHHHHHHHHHS
T ss_pred             cCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHH-HHHHHHHH------HhhHHHHHHHHHH
Confidence            3554 345555555554333           267788888888889998765 44443433      3577888888776


Q ss_pred             CC
Q 007573          537 GV  538 (597)
Q Consensus       537 ~~  538 (597)
                      +.
T Consensus       137 ~~  138 (186)
T PF06552_consen  137 GL  138 (186)
T ss_dssp             SS
T ss_pred             Hh
Confidence            54

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1

Probab=84.14  E-value=7  Score=29.64  Aligned_cols=60  Identities=13%  Similarity=0.168  Sum_probs=41.6

Q ss_pred             HHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHH
Q 007573          388 KALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVD  449 (597)
Q Consensus       388 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~  449 (597)
                      +..+-++.+....+-|++......+.+|.+.+++..|.++|+.+..+.+  +....|..++.
T Consensus        28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~--~~~~~Y~~~lq   87 (108)
T PF02284_consen   28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG--NKKEIYPYILQ   87 (108)
T ss_dssp             HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT--T-TTHHHHHHH
T ss_pred             HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--ChHHHHHHHHH
Confidence            5566666666677889999999999999999999999999998876533  33336766653

9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=83.93  E-value=5.8  Score=35.50  Aligned_cols=63  Identities=10%  Similarity=-0.069  Sum_probs=44.1

Q ss_pred             HHHHHHHHHHhcCCHH-------HHHHHHHHHHhcCCC--C----CchHHHHHHHHHhcCCcHHHHHHHHHHHhCC
Q 007573          475 VWGSLLAACVINLNVE-------LGELAAKKMRELDPQ--N----SAVYVMLSNLYAAAGMWRDVTRVRLLMKEQG  537 (597)
Q Consensus       475 ~~~~l~~~~~~~g~~~-------~a~~~~~~~~~~~p~--~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  537 (597)
                      .+..+.+.|...|+.+       .|...|+++.+.+..  .    ......++.+..+.|++++|.+.+.++...+
T Consensus       120 l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~  195 (214)
T PF09986_consen  120 LCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK  195 (214)
T ss_pred             HHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence            4555666677777644       455555555544322  1    4566788999999999999999999998754

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=83.26  E-value=1.8  Score=25.35  Aligned_cols=24  Identities=17%  Similarity=0.260  Sum_probs=12.1

Q ss_pred             CCcccHHHHHHHHHHhcCCHHHHH
Q 007573          336 EANVSVCNAVITMYSRCGGILDSE  359 (597)
Q Consensus       336 ~~~~~~~~~l~~~~~~~g~~~~A~  359 (597)
                      |.+...|+.+...|...|++++|+
T Consensus        10 P~n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen   10 PNNAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             CCCHHHHHHHHHHHHHCcCHHhhc
Confidence            334445555555555555555543

>TIGR02270 conserved hypothetical protein

Probab=83.12  E-value=53  Score=32.87  Aligned_cols=232  Identities=9%  Similarity=-0.027  Sum_probs=137.9

Q ss_pred             HHHHHhcCChHHHHHHHhhcCC--CCcchHHHHHHHHHhCCChhHHHHHHhhCCCCCcchHHHHHHHHHcCCChHHHHHH
Q 007573           57 ISALSRAGKISAARQLFDQMTT--KDVITWNAIITGYWQNGFLQESKNLFQSMPVKNIVSWNCMIAGCIDNDRIDDAFDY  134 (597)
Q Consensus        57 ~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~  134 (597)
                      |+++...|  +.+...+-....  ++...+-....++.........-.+.+.+..++.......++++...+.......+
T Consensus        45 LdgL~~~G--~~a~~~L~~aL~~d~~~ev~~~aa~al~~~~~~~~~~~L~~~L~d~~~~vr~aaa~ALg~i~~~~a~~~L  122 (410)
T TIGR02270        45 VDGLVLAG--KAATELLVSALAEADEPGRVACAALALLAQEDALDLRSVLAVLQAGPEGLCAGIQAALGWLGGRQAEPWL  122 (410)
T ss_pred             HHHHHHhh--HhHHHHHHHHHhhCCChhHHHHHHHHHhccCChHHHHHHHHHhcCCCHHHHHHHHHHHhcCCchHHHHHH
Confidence            77887888  566776655553  33333443333443333333355566666666777888899999888877766666


Q ss_pred             HccCCCCChhhHHHHHHHHHcCCChHHHHHHHccCCCCCchhHHHHHHHHHhCCChhHHHHHHHhcccCCcchHHHHHHH
Q 007573          135 FQAMPERNTATYNAMISGFLKHGRLEEATRLFEQMPRRNVISYTAMLDGFMKKGEVDKARALSDYMSFKNVVSWTVMITG  214 (597)
Q Consensus       135 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ll~~  214 (597)
                      ..-+..+++.+..+.+.++...+. +-...+..-+..+|...-..-+.++...++.+..-.+..-...+|...-..-+.+
T Consensus       123 ~~~L~~~~p~vR~aal~al~~r~~-~~~~~L~~~L~d~d~~Vra~A~raLG~l~~~~a~~~L~~al~d~~~~VR~aA~~a  201 (410)
T TIGR02270       123 EPLLAASEPPGRAIGLAALGAHRH-DPGPALEAALTHEDALVRAAALRALGELPRRLSESTLRLYLRDSDPEVRFAALEA  201 (410)
T ss_pred             HHHhcCCChHHHHHHHHHHHhhcc-ChHHHHHHHhcCCCHHHHHHHHHHHHhhccccchHHHHHHHcCCCHHHHHHHHHH
Confidence            666667777777667777765542 2222233333456777777778888777776544444444456677777777788


Q ss_pred             HHcCCChHHHHHHHhh-cCCCCCCchHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChhHHHHHHH
Q 007573          215 YVKNERFCEARELFYR-MPDYDKNVFVVTAMITGFCKVGMLENARLLFERIQPKDCVSFNAMIAGYAQNGVAEEALRLFS  293 (597)
Q Consensus       215 ~~~~g~~~~a~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~  293 (597)
                      ....|. .+|...+.. ...  ++......+...+...|. +++...+..+.... .+-...+.++.+.|+...+-.+..
T Consensus       202 l~~lG~-~~A~~~l~~~~~~--~g~~~~~~l~~~lal~~~-~~a~~~L~~ll~d~-~vr~~a~~AlG~lg~p~av~~L~~  276 (410)
T TIGR02270       202 GLLAGS-RLAWGVCRRFQVL--EGGPHRQRLLVLLAVAGG-PDAQAWLRELLQAA-ATRREALRAVGLVGDVEAAPWCLE  276 (410)
T ss_pred             HHHcCC-HhHHHHHHHHHhc--cCccHHHHHHHHHHhCCc-hhHHHHHHHHhcCh-hhHHHHHHHHHHcCCcchHHHHHH
Confidence            888887 566555544 333  444444444444433333 35555555544322 245566667777777776665555


Q ss_pred             HhH
Q 007573          294 GMI  296 (597)
Q Consensus       294 ~m~  296 (597)
                      .|.
T Consensus       277 ~l~  279 (410)
T TIGR02270       277 AMR  279 (410)
T ss_pred             Hhc
Confidence            543

Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.

>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=82.43  E-value=1  Score=37.44  Aligned_cols=25  Identities=8%  Similarity=0.175  Sum_probs=12.2

Q ss_pred             hhhHHHHHHHHHcCCChHHHHHHHc
Q 007573          143 TATYNAMISGFLKHGRLEEATRLFE  167 (597)
Q Consensus       143 ~~~~~~l~~~~~~~g~~~~A~~~~~  167 (597)
                      ....+.++..|++.++.++..+.++
T Consensus        42 ~~~~~~L~~ly~~~~~~~~l~~~L~   66 (143)
T PF00637_consen   42 PDLHTLLLELYIKYDPYEKLLEFLK   66 (143)
T ss_dssp             HHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred             HHHHHHHHHHHHhcCCchHHHHHcc
Confidence            4444555555555544444444444

These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=82.19  E-value=4.4  Score=30.33  Aligned_cols=41  Identities=17%  Similarity=0.188  Sum_probs=21.0

Q ss_pred             HHHHHHhcCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHh
Q 007573          495 AAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRVRLLMKE  535 (597)
Q Consensus       495 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  535 (597)
                      .+++.++.+|+|......++..+...|++++|.+.+-.+.+
T Consensus        10 al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~   50 (90)
T PF14561_consen   10 ALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVR   50 (90)
T ss_dssp             HHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHC
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            34444455555555555555555555555555555555544

>PRK12798 chemotaxis protein; Reviewed

Probab=81.94  E-value=56  Score=32.25  Aligned_cols=205  Identities=13%  Similarity=0.141  Sum_probs=132.4

Q ss_pred             cCCHHHHHHHHhccC----CCChhhHHHHHHHH-HHcCCHHHHHHHHHHHHHCCCCCCh----HHHHHHHHHHhccCcHH
Q 007573          352 CGGILDSELAFRQIH----SPNLVSWNTIIAAF-AQHGHYEKALIFFSQMGLNGFDPDG----ITFLSLLSACGHAGKVN  422 (597)
Q Consensus       352 ~g~~~~A~~~~~~~~----~~~~~~~~~li~~~-~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~ll~~~~~~g~~~  422 (597)
                      .|+.++|.+.+..+.    ++....+-.|+.+- ....++.+|+++|+...-.  -|-.    .....-+-.....|+.+
T Consensus       125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLl--aPGTLvEEAALRRsi~la~~~g~~~  202 (421)
T PRK12798        125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLL--APGTLVEEAALRRSLFIAAQLGDAD  202 (421)
T ss_pred             cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHh--CCchHHHHHHHHHhhHHHHhcCcHH
Confidence            588888988888887    34455677776654 4467899999999988753  4443    23444455667889999


Q ss_pred             HHHHHHHHhHHhcCCCCChHHHHH-HHHHHhhcC---CHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 007573          423 ESMDLFELMVKVYGIIPSSEHYTC-LVDILSRAG---QLEKAWQITQGMPFEADTGVWGSLLAACVINLNVELGELAAKK  498 (597)
Q Consensus       423 ~a~~~~~~~~~~~~~~p~~~~~~~-l~~~~~~~g---~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~  498 (597)
                      ++..+-....+.+.-.|-...|.. +...+.+.+   +.+.-..++..|...--...|..+...-...|+.+.|...-++
T Consensus       203 rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~  282 (421)
T PRK12798        203 KFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASER  282 (421)
T ss_pred             HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence            988888777776666665443333 333444333   4455556666665222355888888889999999999999999


Q ss_pred             HHhcCCCCCchHHHHHHHHH-----hcCCcHHHHHHHHHHHhCCCccCCCeeEEEECCEEEEEEeCCCCCcchHHHHHHH
Q 007573          499 MRELDPQNSAVYVMLSNLYA-----AAGMWRDVTRVRLLMKEQGVTKQCAYSWIEIGNKVHYFLGGDMSHPCIDKIHLEL  573 (597)
Q Consensus       499 ~~~~~p~~~~~~~~l~~~~~-----~~g~~~~A~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~p~~~~~~~~l  573 (597)
                      ++.+...+ ..-...+..|.     -..++++|.+.+..+....+                        +|....+...-
T Consensus       283 A~~L~~~~-~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I~~~~L------------------------~~~Dr~Ll~AA  337 (421)
T PRK12798        283 ALKLADPD-SADAARARLYRGAALVASDDAESALEELSQIDRDKL------------------------SERDRALLEAA  337 (421)
T ss_pred             HHHhccCC-CcchHHHHHHHHHHccCcccHHHHHHHHhcCChhhC------------------------ChhhHHHHHHH
Confidence            99886432 22223333333     35567777777766544333                        55556655555


Q ss_pred             HHHHHHHhhc
Q 007573          574 KRASVQMKSV  583 (597)
Q Consensus       574 ~~~~~~~~~~  583 (597)
                      ...-.++.++
T Consensus       338 ~~va~~V~~~  347 (421)
T PRK12798        338 RSVARQVRRA  347 (421)
T ss_pred             HHHHHHHhcC
Confidence            5555555544

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=81.93  E-value=3  Score=26.16  Aligned_cols=27  Identities=19%  Similarity=0.229  Sum_probs=23.2

Q ss_pred             HHHHHHHHhcCCcHHHHHHHHHHHhCC
Q 007573          511 VMLSNLYAAAGMWRDVTRVRLLMKEQG  537 (597)
Q Consensus       511 ~~l~~~~~~~g~~~~A~~~~~~~~~~~  537 (597)
                      ..|+.+|...|+.+.|.++++++...|
T Consensus         3 LdLA~ayie~Gd~e~Ar~lL~evl~~~   29 (44)
T TIGR03504         3 LDLARAYIEMGDLEGARELLEEVIEEG   29 (44)
T ss_pred             hHHHHHHHHcCChHHHHHHHHHHHHcC
Confidence            468899999999999999999988654

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=81.87  E-value=0.93  Score=42.46  Aligned_cols=86  Identities=9%  Similarity=0.094  Sum_probs=48.7

Q ss_pred             cCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcHHHHHHHH
Q 007573          454 AGQLEKAWQITQGMP-FEA-DTGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRVRL  531 (597)
Q Consensus       454 ~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~  531 (597)
                      .|.+++|.+.+.... ..| ....+.--.+++.+.+....|++-+..+++++|+...-|-.-+.+....|+|++|...+.
T Consensus       127 ~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~  206 (377)
T KOG1308|consen  127 DGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLA  206 (377)
T ss_pred             CcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHHH
Confidence            445555555554433 222 333444444555566666666666666666666665556666666666666666666666


Q ss_pred             HHHhCCCc
Q 007573          532 LMKEQGVT  539 (597)
Q Consensus       532 ~~~~~~~~  539 (597)
                      ...+.+..
T Consensus       207 ~a~kld~d  214 (377)
T KOG1308|consen  207 LACKLDYD  214 (377)
T ss_pred             HHHhcccc
Confidence            66555543

>PF14432 DYW_deaminase: DYW family of nucleic acid deaminases

Probab=81.62  E-value=1.3  Score=35.16  Aligned_cols=27  Identities=44%  Similarity=0.756  Sum_probs=21.6

Q ss_pred             CeeEEEECCEEEEEEeCCCCCcchHHHHHHH
Q 007573          543 AYSWIEIGNKVHYFLGGDMSHPCIDKIHLEL  573 (597)
Q Consensus       543 ~~s~~~~~~~~~~~~~~~~~~p~~~~~~~~l  573 (597)
                      |+||+++    +.|++|+.+||....+...+
T Consensus         2 ~~~w~~~----h~F~sgd~shp~~~~~~~~~   28 (116)
T PF14432_consen    2 GCSWIEV----HSFVSGDRSHPQSELINKMK   28 (116)
T ss_pred             CCCccce----EEEEeCCCcCccHHHHHHHH
Confidence            6789876    99999999999985555544

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=81.19  E-value=3.1  Score=22.50  Aligned_cols=20  Identities=20%  Similarity=0.273  Sum_probs=10.6

Q ss_pred             HHHHHHhhcCCHHHHHHHHh
Q 007573          446 CLVDILSRAGQLEKAWQITQ  465 (597)
Q Consensus       446 ~l~~~~~~~g~~~~A~~~~~  465 (597)
                      .+..++...|++++|..+++
T Consensus         6 ~la~~~~~~G~~~eA~~~l~   25 (26)
T PF07721_consen    6 ALARALLAQGDPDEAERLLR   25 (26)
T ss_pred             HHHHHHHHcCCHHHHHHHHh
Confidence            34455555555555555543

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=80.87  E-value=90  Score=33.99  Aligned_cols=215  Identities=15%  Similarity=0.039  Sum_probs=114.0

Q ss_pred             hccchhHHHHHHHHHHHHhCCCCccc-------HHHHHHH-HHHhcCCHHHHHHHHhccC--------CCChhhHHHHHH
Q 007573          315 SALQLLNEGRQSHVLVIRNGFEANVS-------VCNAVIT-MYSRCGGILDSELAFRQIH--------SPNLVSWNTIIA  378 (597)
Q Consensus       315 ~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~-~~~~~g~~~~A~~~~~~~~--------~~~~~~~~~li~  378 (597)
                      ....++.+|..+..++...--.|+..       .+++|-. .....|+++.|.++.+...        ....+.+..+..
T Consensus       426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~  505 (894)
T COG2909         426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE  505 (894)
T ss_pred             HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence            35567777777777665543232221       2333321 2234578888877766543        245567777778


Q ss_pred             HHHHcCCHHHHHHHHHHHHHCCCCCChHHHH---HHH--HHHhccCcH--HHHHHHHHHhHHhcCC-CC----ChHHHHH
Q 007573          379 AFAQHGHYEKALIFFSQMGLNGFDPDGITFL---SLL--SACGHAGKV--NESMDLFELMVKVYGI-IP----SSEHYTC  446 (597)
Q Consensus       379 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~---~ll--~~~~~~g~~--~~a~~~~~~~~~~~~~-~p----~~~~~~~  446 (597)
                      +..-.|++++|..+.++..+.--.-+...+.   .+.  ..+...|+.  .+....|......+.. .|    -..++..
T Consensus       506 a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~  585 (894)
T COG2909         506 AAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQ  585 (894)
T ss_pred             HHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence            8888999999999887765532122332222   221  234455632  3333334333322111 11    1234444


Q ss_pred             HHHHHhhcCCHHHHHHHH----hhCC-CCCCH--H--HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--CchHHH---
Q 007573          447 LVDILSRAGQLEKAWQIT----QGMP-FEADT--G--VWGSLLAACVINLNVELGELAAKKMRELDPQN--SAVYVM---  512 (597)
Q Consensus       447 l~~~~~~~g~~~~A~~~~----~~~~-~~p~~--~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~--~~~~~~---  512 (597)
                      +..++.+   ++.+..-.    .-.. ..|..  .  .+..|+......|+.++|...+.++..+...+  ...|..   
T Consensus       586 ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~  662 (894)
T COG2909         586 LLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAY  662 (894)
T ss_pred             HHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHH
Confidence            5555544   33333222    2111 22322  1  22366777889999999999999988754332  222221   


Q ss_pred             --HHHHHHhcCCcHHHHHHHHH
Q 007573          513 --LSNLYAAAGMWRDVTRVRLL  532 (597)
Q Consensus       513 --l~~~~~~~g~~~~A~~~~~~  532 (597)
                        -...-..+|+.+++.....+
T Consensus       663 ~v~~~lwl~qg~~~~a~~~l~~  684 (894)
T COG2909         663 KVKLILWLAQGDKELAAEWLLK  684 (894)
T ss_pred             HhhHHHhcccCCHHHHHHHHHh
Confidence              12223457888888777655

>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=80.81  E-value=13  Score=39.00  Aligned_cols=187  Identities=18%  Similarity=0.265  Sum_probs=100.7

Q ss_pred             hHHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCHH----------HHHHHHHHHhccchhHHHHHHHHHHHHhCCCCcc
Q 007573          270 VSFNAMIAGYAQNGVAEEALRLFSGMIKMDMQPDDA----------TLVSVFTACSALQLLNEGRQSHVLVIRNGFEANV  339 (597)
Q Consensus       270 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----------~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~  339 (597)
                      .+-..++-.|....+++..+++.+.+.+   -||..          .|.-.++--.+.|+-++|....-.+.+..-+..+
T Consensus       202 d~V~nlmlSyRDvQdY~amirLVe~Lk~---iP~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vap  278 (1226)
T KOG4279|consen  202 DTVSNLMLSYRDVQDYDAMIRLVEDLKR---IPDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAP  278 (1226)
T ss_pred             HHHHHHHhhhccccchHHHHHHHHHHHh---CcchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCC
Confidence            3455667778888888888888888776   34322          2333333334567777777665555544322222


Q ss_pred             cHHHHHHHHHHhcCCHHHHHHHHhccCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccC
Q 007573          340 SVCNAVITMYSRCGGILDSELAFRQIHSPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAG  419 (597)
Q Consensus       340 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g  419 (597)
                             ++||-+|++      ++.|-         +-+.|...+..+.|.++|++.-+  +.|+..+=..+...+...|
T Consensus       279 -------Dm~Cl~GRI------YKDmF---------~~S~ytDa~s~~~a~~WyrkaFe--veP~~~sGIN~atLL~aaG  334 (1226)
T KOG4279|consen  279 -------DMYCLCGRI------YKDMF---------IASNYTDAESLNHAIEWYRKAFE--VEPLEYSGINLATLLRAAG  334 (1226)
T ss_pred             -------ceeeeechh------hhhhh---------hccCCcchhhHHHHHHHHHHHhc--cCchhhccccHHHHHHHhh
Confidence                   233344432      11111         11234445566778888887765  4666543222222222222


Q ss_pred             c-HHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 007573          420 K-VNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMPFEADTGVWGSLLAACVINLNVELGELAAKK  498 (597)
Q Consensus       420 ~-~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~  498 (597)
                      . ++...++    ++. |        ..|-..+++.|.++.-..+++-.-          .+.+-.-.+|+.+|++..+.
T Consensus       335 ~~Fens~El----q~I-g--------mkLn~LlgrKG~leklq~YWdV~~----------y~~asVLAnd~~kaiqAae~  391 (1226)
T KOG4279|consen  335 EHFENSLEL----QQI-G--------MKLNSLLGRKGALEKLQEYWDVAT----------YFEASVLANDYQKAIQAAEM  391 (1226)
T ss_pred             hhccchHHH----HHH-H--------HHHHHHhhccchHHHHHHHHhHHH----------hhhhhhhccCHHHHHHHHHH
Confidence            2 1211111    111 1        234456678888877776665321          23444456788888888888


Q ss_pred             HHhcCCCC
Q 007573          499 MRELDPQN  506 (597)
Q Consensus       499 ~~~~~p~~  506 (597)
                      |.++.|+.
T Consensus       392 mfKLk~P~  399 (1226)
T KOG4279|consen  392 MFKLKPPV  399 (1226)
T ss_pred             HhccCCce
Confidence            88887763

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=80.81  E-value=42  Score=30.13  Aligned_cols=58  Identities=22%  Similarity=0.298  Sum_probs=33.0

Q ss_pred             HHHhhcCCHHHHHHHHhhCC---CCCCHHHHHH---HHHH--HH-hcCCHHHHHHHHHHHHhcCCCC
Q 007573          449 DILSRAGQLEKAWQITQGMP---FEADTGVWGS---LLAA--CV-INLNVELGELAAKKMRELDPQN  506 (597)
Q Consensus       449 ~~~~~~g~~~~A~~~~~~~~---~~p~~~~~~~---l~~~--~~-~~g~~~~a~~~~~~~~~~~p~~  506 (597)
                      ..-+..+++.+|+++|+++.   ...+..-|..   ++.+  |. ...|.-.+...+++-.+++|.-
T Consensus       162 ~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F  228 (288)
T KOG1586|consen  162 QYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAF  228 (288)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcc
Confidence            33445677777877777654   2222222221   2222  22 2367777788888888888874

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=80.21  E-value=36  Score=28.97  Aligned_cols=129  Identities=11%  Similarity=0.124  Sum_probs=84.6

Q ss_pred             hhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChH-HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChH-HHHH--
Q 007573          371 VSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGI-TFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSE-HYTC--  446 (597)
Q Consensus       371 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~-~~~~--  446 (597)
                      ..|..-+. +++.|..++|+.-|..+.+.|...-+. ............|+...|...|+++-+. .-.|... -...  
T Consensus        60 d~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~d-t~~P~~~rd~ARlr  137 (221)
T COG4649          60 DAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAAD-TSIPQIGRDLARLR  137 (221)
T ss_pred             HHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhcc-CCCcchhhHHHHHH
Confidence            34444333 466788899999999998877543322 2223344567789999999999998765 2233221 1222  


Q ss_pred             HHHHHhhcCCHHHHHHHHhhCCCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 007573          447 LVDILSRAGQLEKAWQITQGMPFE--A-DTGVWGSLLAACVINLNVELGELAAKKMRE  501 (597)
Q Consensus       447 l~~~~~~~g~~~~A~~~~~~~~~~--p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  501 (597)
                      -..++...|.+++...-.+-+..+  | ....-.+|.-+-.+.|++..|...|..+..
T Consensus       138 aa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~  195 (221)
T COG4649         138 AAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN  195 (221)
T ss_pred             HHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence            234566788888888777766522  2 233556677777888999999999988876

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=80.11  E-value=45  Score=29.99  Aligned_cols=90  Identities=11%  Similarity=-0.023  Sum_probs=47.5

Q ss_pred             HHHHHHhhc-CCHHHHHHHHhhCC-----CCCCHHHHHHHHH---HHHhcCCHHHHHHHHHHHHhcCCCCCch-------
Q 007573          446 CLVDILSRA-GQLEKAWQITQGMP-----FEADTGVWGSLLA---ACVINLNVELGELAAKKMRELDPQNSAV-------  509 (597)
Q Consensus       446 ~l~~~~~~~-g~~~~A~~~~~~~~-----~~p~~~~~~~l~~---~~~~~g~~~~a~~~~~~~~~~~p~~~~~-------  509 (597)
                      .+...|... .+++.|+..|++..     .+.+...-..++.   --...+++.+|+++|+++.....+++..       
T Consensus       118 ~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~Kdy  197 (288)
T KOG1586|consen  118 EIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDY  197 (288)
T ss_pred             hHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHH
Confidence            344555433 56666666666543     1122222223332   2346788999999999998776665321       


Q ss_pred             HHHHHHHHHhcCCcHHHHHHHHHHHh
Q 007573          510 YVMLSNLYAAAGMWRDVTRVRLLMKE  535 (597)
Q Consensus       510 ~~~l~~~~~~~g~~~~A~~~~~~~~~  535 (597)
                      +...+-++...++.-.+...+++-.+
T Consensus       198 flkAgLChl~~~D~v~a~~ALeky~~  223 (288)
T KOG1586|consen  198 FLKAGLCHLCKADEVNAQRALEKYQE  223 (288)
T ss_pred             HHHHHHHhHhcccHHHHHHHHHHHHh
Confidence            22223333333555555555555444

>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]

Probab=80.01  E-value=72  Score=32.31  Aligned_cols=143  Identities=10%  Similarity=0.072  Sum_probs=66.2

Q ss_pred             ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC------hH
Q 007573          369 NLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPS------SE  442 (597)
Q Consensus       369 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~------~~  442 (597)
                      +-..|..++..|..+ ..++-..+++++.+.  .-|...+..-+..+...++.+.+..+|.++...  +.|.      .+
T Consensus        98 ~kmal~el~q~y~en-~n~~l~~lWer~ve~--dfnDvv~~ReLa~~yEkik~sk~a~~f~Ka~yr--fI~~~q~~~i~e  172 (711)
T COG1747          98 SKMALLELLQCYKEN-GNEQLYSLWERLVEY--DFNDVVIGRELADKYEKIKKSKAAEFFGKALYR--FIPRRQNAAIKE  172 (711)
T ss_pred             hHHHHHHHHHHHHhc-CchhhHHHHHHHHHh--cchhHHHHHHHHHHHHHhchhhHHHHHHHHHHH--hcchhhhhhHHH
Confidence            334455555555555 445555555555543  223333333333333335555555555555432  2221      12


Q ss_pred             HHHHHHHHHhhcCCHHHHHHHHhhCC----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 007573          443 HYTCLVDILSRAGQLEKAWQITQGMP----FEADTGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYA  518 (597)
Q Consensus       443 ~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~  518 (597)
                      .|..|...-  ..+.+.-..+...+.    ..--...+.-+-.-|....++.+|++++..+++.+..|..+.-.+..-+.
T Consensus       173 vWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lR  250 (711)
T COG1747         173 VWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENWTEAIRILKHILEHDEKDVWARKEIIENLR  250 (711)
T ss_pred             HHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHH
Confidence            333333211  223344444433332    11112233334445666667777777777777776666555554444443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	597
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-12
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	4e-09
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	4e-09
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	1e-05
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	2e-04
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	1e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 68.0 bits (165), Expect = 6e-12
 Identities = 79/589 (13%), Positives = 169/589 (28%), Gaps = 181/589 (30%)

Query: 75  QMTTKDVITWN--AIITGYWQNGFLQESKNLFQSMPVKNIVSWNCMIAGCIDNDRIDDAF 132
           Q   KD+++    A +  +         K++     + +I+         +  D +    
Sbjct: 15  QYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHII---------MSKDAVSGTL 65

Query: 133 DYFQAMPERNTATYNAMISGFLK--HGRLEEATRLFEQMPRRNVISYTAMLDG------- 183
             F  +  +        +   L+  +  L    +  ++ P      Y    D        
Sbjct: 66  RLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQV 125

Query: 184 FMK-----KGEVDKAR-ALSDYMSFKNVV---------SWTVMITGYVKNERFCEARELF 228
           F K          K R AL +    KNV+         +W  +          C + ++ 
Sbjct: 126 FAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDV--------CLSYKVQ 177

Query: 229 YRMPDYDKNVFVVTAMITGFCK--VGMLENARLLFERIQPKDCVSFNAMIAGYAQNGVAE 286
            +M      +F +       C     +LE  + L  +I P      +       +    +
Sbjct: 178 CKMDF---KIFWLNL---KNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQ 231

Query: 287 EALR-LFS------GMIKMDMQPD--DATLVSVFT-ACSAL---------QLLNEGRQSH 327
             LR L         ++ +    +  +A   + F  +C  L           L+    +H
Sbjct: 232 AELRRLLKSKPYENCLLVLL---NVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTH 288

Query: 328 VLVI--RNGFEANVSVCNAVITMYSRCGGILDSELAFRQIH--SPNLVSWNTIIAAFAQH 383
           + +         +        ++  +       +L  R++   +P  +S   IIA   + 
Sbjct: 289 ISLDHHSMTLTPDEVK-----SLLLKYLDCRPQDLP-REVLTTNPRRLS---IIAESIRD 339

Query: 384 G--------HYE-KALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMVKV 434
           G        H     L    +  LN  +P                   E   +F+ +   
Sbjct: 340 GLATWDNWKHVNCDKLTTIIESSLNVLEPA------------------EYRKMFDRLS-- 379

Query: 435 YGIIPSSEHYTCLVDI----LSRAGQLEKAWQITQGMPFEADTGVWGSLLAACVINLNVE 490
             + P S        I    LS                      +W  ++ + V+ +   
Sbjct: 380 --VFPPS------AHIPTILLSL---------------------IWFDVIKSDVMVV--- 407

Query: 491 LGELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRVRLLMKEQGVT---KQCAYSWI 547
           + +L    + E  P+ S + +   ++Y           + L +K +      +      +
Sbjct: 408 VNKLHKYSLVEKQPKESTISIP--SIY-----------LELKVKLENEYALHRSI----V 450

Query: 548 EIGNKVHYFLGGDMSHPCIDK-----I--HLELKRASVQMKSVDDFVEI 589
           +  N    F   D+  P +D+     I  HL+        + +  F  +
Sbjct: 451 DHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIE---HPERMTLFRMV 496

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134

 Score = 59.1 bits (141), Expect = 4e-09
 Identities = 19/178 (10%), Positives = 51/178 (28%), Gaps = 7/178 (3%)

Query: 300 MQPDDATLVSVFTACSALQLLNEGRQSHVLVIRNGFEANVSVCNAVITMYSRCGGILDSE 359
             P +  L  +         L+  +       +           A          +  + 
Sbjct: 88  ESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAH 147

Query: 360 LAFRQIHS-------PNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLL 412
                 H          L  +N ++  +A+ G +++ +     +   G  PD +++ + L
Sbjct: 148 HLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAAL 207

Query: 413 SACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMPFE 470
              G   +   +++     +   G+   +     L+    RA  L+   ++       
Sbjct: 208 QCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLP 265

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134

 Score = 58.7 bits (140), Expect = 4e-09
 Identities = 14/138 (10%), Positives = 37/138 (26%), Gaps = 13/138 (9%)

Query: 111 NIVSWNCMIAGCIDNDRIDDAFDYFQAMPER-------NTATYNAMISGFLKHGRLEEAT 163
                      C+  D++  A         +           YNA++ G+ + G  +E  
Sbjct: 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELV 185

Query: 164 RLFEQMPRR----NVISYTAMLDGFMKKGEVDKARALSDYMSFKNVVSWTVMITGYVKNE 219
            +   +       +++SY A L    ++     A  +   +   +     +         
Sbjct: 186 YVLFMVKDAGLTPDLLSYAAALQCMGRQD--QDAGTIERCLEQMSQEGLKLQALFTAVLL 243

Query: 220 RFCEARELFYRMPDYDKN 237
              +   +   +      
Sbjct: 244 SEEDRATVLKAVHKVKPT 261

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134

 Score = 47.1 bits (110), Expect = 1e-05
 Identities = 12/81 (14%), Positives = 26/81 (32%), Gaps = 7/81 (8%)

Query: 241 VTAMITGFCKVGMLENARLLFERIQPK-------DCVSFNAMIAGYAQNGVAEEALRLFS 293
           + A          L  A  L      +           +NA++ G+A+ G  +E + +  
Sbjct: 130 LLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLF 189

Query: 294 GMIKMDMQPDDATLVSVFTAC 314
            +    + PD  +  +     
Sbjct: 190 MVKDAGLTPDLLSYAAALQCM 210

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134

 Score = 43.7 bits (101), Expect = 2e-04
 Identities = 12/138 (8%), Positives = 37/138 (26%), Gaps = 12/138 (8%)

Query: 54  NAKISALSRAGKISAARQLFDQMTTK-------DVITWNAIITGYWQNGFLQESKNLFQS 106
            A         ++  A  L      +        +  +NA++ G+ + G  +E   +   
Sbjct: 131 LAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFM 190

Query: 107 MPVK----NIVSWNCMIAGCIDNDRIDDAF-DYFQAMPERNTATYNAMISGFLKHGRLEE 161
           +       +++S+   +      D+         + M +          +  L       
Sbjct: 191 VKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRAT 250

Query: 162 ATRLFEQMPRRNVISYTA 179
             +   ++     +    
Sbjct: 251 VLKAVHKVKPTFSLPPQL 268

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291

 Score = 43.2 bits (101), Expect = 1e-04
 Identities = 37/272 (13%), Positives = 76/272 (27%), Gaps = 45/272 (16%)

Query: 159 LEEATRLFEQMPRRNVISYTAMLDGFMKKGEVDKARALSDYMSFKNVVSWTVMITGYVKN 218
           + EA R+    P R+V     +   ++ + +           S   + +  +       +
Sbjct: 19  INEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLASH 78

Query: 219 ERFCEARELFYRM---PDYDKNVFVVTAMITGFCKVGMLENARLLFERIQPKDCVSFNAM 275
            R         R         N   +    + +      + A     +    +C++    
Sbjct: 79  SRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQGDSLECMAMTVQ 138

Query: 276 IAGYAQNGVAEEALRLFSGMIKMDMQPDDATLVSVFTACSALQLLNEGRQSHVLVIRNGF 335
           I    +    + A +    M   D   D              QL                
Sbjct: 139 I--LLKLDRLDLARKELKKMQDQD--EDAT----------LTQL---------------- 168

Query: 336 EANVSVCNAVITMYSRCGGILDSELAFR---QIHSPNLVSWNTIIAAFAQHGHYEKALIF 392
                   A +++ +    + D+   F+      SP L+  N   A     G +E A   
Sbjct: 169 ------ATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGV 222

Query: 393 FSQ-MGLNGFDPDGITFLSLLSACGHAGKVNE 423
             + +  +   P+  T ++L+    H GK  E
Sbjct: 223 LQEALDKDSGHPE--TLINLVVLSQHLGKPPE 252

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	597
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	100.0
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	100.0
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.97
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.96
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	99.95
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	99.94
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.93
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.92
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.92
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.92
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.91
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.9
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.86
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.86
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.83
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.83
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.82
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.82
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.82
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.81
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.81
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.81
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.8
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.8
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.78
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.78
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.78
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.77
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.76
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.76
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.74
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.74
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.7
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.69
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.68
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.65
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.63
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	99.63
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.61
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.61
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	99.6
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.6
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.58
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.58
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.57
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.56
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.55
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.54
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.54
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.54
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.54
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.53
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.53
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.53
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.52
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.51
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.5
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.5
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.49
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.49
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.48
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.48
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.43
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	99.4
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.4
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.39
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.39
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.39
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.38
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.36
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.36
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.36
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	99.36
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.34
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.34
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.33
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.33
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.32
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.31
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.29
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.25
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.24
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.23
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.15
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.14
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.13
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.13
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.1
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.1
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	99.09
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	99.07
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.07
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.06
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.05
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.05
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.04
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.03
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.02
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.02
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	98.99
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	98.99
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	98.97
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	98.97
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	98.97
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	98.96
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	98.94
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	98.9
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	98.89
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	98.89
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	98.88
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	98.87
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	98.87
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	98.86
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	98.85
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	98.85
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	98.81
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	98.8
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.79
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	98.79
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	98.79
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	98.78
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.76
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	98.76
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	98.76
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	98.73
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	98.73
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.73
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	98.72
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.72
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	98.72
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	98.71
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	98.69
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	98.68
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	98.65
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	98.63
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.62
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	98.62
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	98.61
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	98.6
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	98.6
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	98.59
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.57
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.57
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	98.55
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	98.54
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	98.53
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.53
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	98.52
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.52
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.52
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	98.52
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	98.5
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	98.49
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	98.48
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	98.48
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.47
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	98.47
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	98.46
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.46
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.45
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	98.44
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	98.42
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	98.4
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	98.39
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	98.39
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.38
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	98.37
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	98.36
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	98.34
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.34
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.29
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.29
3k9i_A	117	BH0479 protein; putative protein binding protein,	98.28
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	98.26
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	98.26
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	98.25
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	98.24
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.23
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	98.22
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	98.22
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	98.21
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	98.2
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	98.16
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	98.16
3k9i_A	117	BH0479 protein; putative protein binding protein,	98.15
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	98.15
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.14
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	98.13
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	98.1
2l6j_A	111	TPR repeat-containing protein associated with HSP;	98.08
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	98.08
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	98.08
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	98.05
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	98.04
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	98.04
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	98.01
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	98.0
2l6j_A	111	TPR repeat-containing protein associated with HSP;	97.96
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	97.95
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	97.95
2kat_A	115	Uncharacterized protein; NESG, structure, structur	97.94
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	97.88
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	97.84
1klx_A	138	Cysteine rich protein B; structural genomics, heli	97.8
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	97.74
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	97.67
3lvg_A	624	Clathrin heavy chain 1; SELF assembly, coated PIT,	97.63
3lvg_A	624	Clathrin heavy chain 1; SELF assembly, coated PIT,	97.62
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	97.61
1klx_A	138	Cysteine rich protein B; structural genomics, heli	97.6
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	97.6
2kat_A	115	Uncharacterized protein; NESG, structure, structur	97.59
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	97.49
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	97.48
1qsa_A	618	Protein (soluble lytic transglycosylase SLT70); al	97.32
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	97.26
1pc2_A	152	Mitochondria fission protein; unknown function; NM	97.26
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	97.24
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	97.24
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	97.22
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	97.13
1wy6_A	172	Hypothetical protein ST1625; helical repeat protei	97.05
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	97.01
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	96.83
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	96.61
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	96.6
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	96.54
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	96.45
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	96.44
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	96.39
1pc2_A	152	Mitochondria fission protein; unknown function; NM	96.39
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	96.25
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	96.06
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	95.81
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	95.61
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	95.57
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	95.3
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	94.97
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	94.83
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	94.8
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	94.77
1wy6_A	172	Hypothetical protein ST1625; helical repeat protei	94.72
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	94.39
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	94.37
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	92.49
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	92.14
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	91.64
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	91.57
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	91.1
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	88.98
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	88.48
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	88.46
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	87.66
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	87.58
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	87.2
1v54_E	109	Cytochrome C oxidase polypeptide VA; oxidoreductas	86.96
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	86.8
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	86.14
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	85.93
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	85.67
2wpv_A	312	GET4, UPF0363 protein YOR164C; golgi-ER traffickin	85.25
1qsa_A	618	Protein (soluble lytic transglycosylase SLT70); al	84.48
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	83.7
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	83.26
2uwj_G	115	Type III export protein PSCG; virulence, chaperone	83.11
2p58_C	116	Putative type III secretion protein YSCG; type III	82.68
2qx5_A	661	Nucleoporin NIC96; mRNA transport, nuclear pore co	82.15
2y69_E	152	Cytochrome C oxidase subunit 5A; electron transpor	80.68
3esl_A	202	Checkpoint serine/threonine-protein kinase BUB1; m	80.22
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	80.12

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=100.00  E-value=5.8e-42  Score=363.29  Aligned_cols=475  Identities=9%  Similarity=-0.046  Sum_probs=392.2

Q ss_pred             HHHHhcCChHHHHHHHhhcCCCCcchHHHHHHHHHhCCChhHHHHHHhhCC--CCCcchHHHHHHHHHcCCChHHHHHHH
Q 007573           58 SALSRAGKISAARQLFDQMTTKDVITWNAIITGYWQNGFLQESKNLFQSMP--VKNIVSWNCMIAGCIDNDRIDDAFDYF  135 (597)
Q Consensus        58 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~A~~~~  135 (597)
                      ..+.+.|.+..+...++.++.+++..|+.++..|.+.|++++|+.+|+++.  .|+..++..++.+|.+.|++++|..++
T Consensus        61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~  140 (597)
T 2xpi_A           61 NNTSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLL  140 (597)
T ss_dssp             ---------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             ccccccCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHhhCCCchHHHHHHHHHHHcCcHHHHHHHH
Confidence            345677888889999999988899999999999999999999999999986  357789999999999999999999999


Q ss_pred             ccCC--CCChhhHHHHHHHHHcCCChHHHHHHHccCCCC-------------------CchhHHHHHHHHHhCCChhHHH
Q 007573          136 QAMP--ERNTATYNAMISGFLKHGRLEEATRLFEQMPRR-------------------NVISYTAMLDGFMKKGEVDKAR  194 (597)
Q Consensus       136 ~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------------------~~~~~~~li~~~~~~g~~~~A~  194 (597)
                      +.+.  ++++.+++.++.+|.+.|++++|.++|+++...                   ++.+|+.++.+|.+.|++++|+
T Consensus       141 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~  220 (597)
T 2xpi_A          141 TKEDLYNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAK  220 (597)
T ss_dssp             HHTCGGGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHhccccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHH
Confidence            9995  788999999999999999999999999965433                   3788999999999999999999


Q ss_pred             HHHHhccc--C-CcchHHHHHHHHHcCCChHHHHHH---HhhcCCC--CCCchHHHHHHHHHHhcCCHHHHHHHHhhcCC
Q 007573          195 ALSDYMSF--K-NVVSWTVMITGYVKNERFCEAREL---FYRMPDY--DKNVFVVTAMITGFCKVGMLENARLLFERIQP  266 (597)
Q Consensus       195 ~~~~~m~~--~-~~~~~~~ll~~~~~~g~~~~a~~~---~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  266 (597)
                      ++|++|..  | +...+..+...+...+..+.+...   +..+...  .....+++.++..|.+.|++++|.++|+++.+
T Consensus       221 ~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~  300 (597)
T 2xpi_A          221 ECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSING  300 (597)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTT
T ss_pred             HHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhc
Confidence            99999954  3 334455555444433322221110   1111111  11234566678889999999999999999887


Q ss_pred             --CChhHHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhccchhHHHHHHHHHHHHhCCCCcccHHHH
Q 007573          267 --KDCVSFNAMIAGYAQNGVAEEALRLFSGMIKMDMQPDDATLVSVFTACSALQLLNEGRQSHVLVIRNGFEANVSVCNA  344 (597)
Q Consensus       267 --~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  344 (597)
                        ++..+|+.++.+|.+.|++++|+.+|+++.+.+ +.+..++..++.++...|+.++|..++..+.+.. +.+..+++.
T Consensus       301 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~  378 (597)
T 2xpi_A          301 LEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLA  378 (597)
T ss_dssp             GGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHH
T ss_pred             CCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHH
Confidence              789999999999999999999999999999865 3367788999999999999999999999998765 667889999


Q ss_pred             HHHHHHhcCCHHHHHHHHhccC---CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcH
Q 007573          345 VITMYSRCGGILDSELAFRQIH---SPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKV  421 (597)
Q Consensus       345 l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~  421 (597)
                      ++.+|.+.|++++|.++|+++.   +.+..+|+.++.+|.+.|++++|+++|+++.+.+ +.+..++..++.+|.+.|++
T Consensus       379 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~  457 (597)
T 2xpi_A          379 VGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNI  457 (597)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCH
T ss_pred             HHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCH
Confidence            9999999999999999999875   5678899999999999999999999999999764 55788999999999999999


Q ss_pred             HHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC-------CCCC--HHHHHHHHHHHHhcCCHHHH
Q 007573          422 NESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMP-------FEAD--TGVWGSLLAACVINLNVELG  492 (597)
Q Consensus       422 ~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~p~--~~~~~~l~~~~~~~g~~~~a  492 (597)
                      ++|.++|+++.+.  .+.+..+|..++.+|.+.|++++|.++|+++.       ..|+  ..+|..++.+|...|++++|
T Consensus       458 ~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A  535 (597)
T 2xpi_A          458 LLANEYLQSSYAL--FQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAA  535 (597)
T ss_dssp             HHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHH
Confidence            9999999999874  24468899999999999999999999999874       3676  67999999999999999999


Q ss_pred             HHHHHHHHhcCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHhCC
Q 007573          493 ELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRVRLLMKEQG  537 (597)
Q Consensus       493 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  537 (597)
                      +..++++++.+|+++.+|..++.+|...|++++|.+.++++.+..
T Consensus       536 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~  580 (597)
T 2xpi_A          536 IDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAIS  580 (597)
T ss_dssp             HHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Confidence            999999999999999999999999999999999999999998754

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.3e-40  Score=352.96  Aligned_cols=469  Identities=7%  Similarity=-0.010  Sum_probs=407.4

Q ss_pred             CCCcchHHHHHHHHHhcCChHHHHHHHhhcCC--CCcchHHHHHHHHHhCCChhHHHHHHhhCC--CCCcchHHHHHHHH
Q 007573           47 TQYVFVNNAKISALSRAGKISAARQLFDQMTT--KDVITWNAIITGYWQNGFLQESKNLFQSMP--VKNIVSWNCMIAGC  122 (597)
Q Consensus        47 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~ll~~~  122 (597)
                      .+++..|+.++..|.+.|++++|..+|+++..  |+..++..++.+|.+.|++++|+.+|+++.  .+++.+++.++.+|
T Consensus        81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~  160 (597)
T 2xpi_A           81 LSREDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFCL  160 (597)
T ss_dssp             -CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGGGTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHccCchHHHHHHHHHHhhCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhccccchhHHHHHHHHH
Confidence            36788899999999999999999999999965  888899999999999999999999999995  45999999999999


Q ss_pred             HcCCChHHHHHHHccCCCCC-------------------hhhHHHHHHHHHcCCChHHHHHHHccCCC--C-CchhHHHH
Q 007573          123 IDNDRIDDAFDYFQAMPERN-------------------TATYNAMISGFLKHGRLEEATRLFEQMPR--R-NVISYTAM  180 (597)
Q Consensus       123 ~~~~~~~~A~~~~~~~~~~~-------------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l  180 (597)
                      .+.|++++|.++|+++.+.+                   ..+|+.++.+|.+.|++++|.++|++|.+  | +...+..+
T Consensus       161 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l  240 (597)
T 2xpi_A          161 VKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQL  240 (597)
T ss_dssp             HHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHH
Confidence            99999999999999765443                   78999999999999999999999999975  3 34455556


Q ss_pred             HHHHHhCCChhHHHHH---HHhcccC----CcchHHHHHHHHHcCCChHHHHHHHhhcCCCCCCchHHHHHHHHHHhcCC
Q 007573          181 LDGFMKKGEVDKARAL---SDYMSFK----NVVSWTVMITGYVKNERFCEARELFYRMPDYDKNVFVVTAMITGFCKVGM  253 (597)
Q Consensus       181 i~~~~~~g~~~~A~~~---~~~m~~~----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  253 (597)
                      ...+...+..+.+...   +..+...    ...+|+.++..|.+.|++++|.++|+.+.+.+++..+++.++..|.+.|+
T Consensus       241 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  320 (597)
T 2xpi_A          241 VSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSR  320 (597)
T ss_dssp             HHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTC
T ss_pred             HHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcC
Confidence            6555444333322211   2222222    23456667888999999999999999999887889999999999999999


Q ss_pred             HHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhccchhHHHHHHHHHH
Q 007573          254 LENARLLFERIQ---PKDCVSFNAMIAGYAQNGVAEEALRLFSGMIKMDMQPDDATLVSVFTACSALQLLNEGRQSHVLV  330 (597)
Q Consensus       254 ~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~  330 (597)
                      +++|..+|+++.   +.+..+|+.++.+|.+.|++++|..+++++.+.. +.+..++..+...+...|++++|..+++.+
T Consensus       321 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  399 (597)
T 2xpi_A          321 FIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKS  399 (597)
T ss_dssp             HHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence            999999999875   3577899999999999999999999999998653 457788999999999999999999999999


Q ss_pred             HHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHhccC---CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHH
Q 007573          331 IRNGFEANVSVCNAVITMYSRCGGILDSELAFRQIH---SPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGIT  407 (597)
Q Consensus       331 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~  407 (597)
                      .+.. +.+..+++.++.+|.+.|++++|.++|+++.   +.+..+|+.++.+|.+.|++++|.++|+++.+.. +.+..+
T Consensus       400 ~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~  477 (597)
T 2xpi_A          400 STMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLL  477 (597)
T ss_dssp             HHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHH
T ss_pred             HHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHH
Confidence            8865 5567899999999999999999999999875   5678899999999999999999999999998764 457889


Q ss_pred             HHHHHHHHhccCcHHHHHHHHHHhHHhc---CCCCC--hHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHH
Q 007573          408 FLSLLSACGHAGKVNESMDLFELMVKVY---GIIPS--SEHYTCLVDILSRAGQLEKAWQITQGMP--FEADTGVWGSLL  480 (597)
Q Consensus       408 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~  480 (597)
                      |..++..+.+.|++++|.++|+++.+..   +..|+  ..+|..++.+|.+.|++++|.++++++.  .+.+..+|..++
T Consensus       478 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~  557 (597)
T 2xpi_A          478 LNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIA  557 (597)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence            9999999999999999999999997753   55777  7899999999999999999999999876  344788999999


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 007573          481 AACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYA  518 (597)
Q Consensus       481 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~  518 (597)
                      .+|...|++++|.+.++++++++|+++.++..++.+|.
T Consensus       558 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~  595 (597)
T 2xpi_A          558 LVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALE  595 (597)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC
T ss_pred             HHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence            99999999999999999999999999999999988764

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.97  E-value=1.4e-27  Score=238.30  Aligned_cols=367  Identities=12%  Similarity=0.052  Sum_probs=254.3

Q ss_pred             HHHHcCCChHHHHHHHccCCC--C-CchhHHHHHHHHHhCCChhHHHHHHHhcc---cCCcchHHHHHHHHHcCCChHHH
Q 007573          151 SGFLKHGRLEEATRLFEQMPR--R-NVISYTAMLDGFMKKGEVDKARALSDYMS---FKNVVSWTVMITGYVKNERFCEA  224 (597)
Q Consensus       151 ~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~---~~~~~~~~~ll~~~~~~g~~~~a  224 (597)
                      ..+.+.|++++|.+.++++.+  | +...+..+...+...|++++|...++...   +.+..+|..+..++.+.|++++|
T Consensus         7 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A   86 (388)
T 1w3b_A            7 HREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEA   86 (388)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHH
Confidence            334445555555555554432  2 23344444555555555555555555442   22344555556666666666666


Q ss_pred             HHHHhhcCCCCCCc-hHHHHHHHHHHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChhHHHHHHHHhHHCCC
Q 007573          225 RELFYRMPDYDKNV-FVVTAMITGFCKVGMLENARLLFERIQ---PKDCVSFNAMIAGYAQNGVAEEALRLFSGMIKMDM  300 (597)
Q Consensus       225 ~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~  300 (597)
                      ...|+.+.+..|+. .++..++.++.+.|++++|.+.|+++.   +.+...+..+...+...|++++|+..|+++.+.. 
T Consensus        87 ~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-  165 (388)
T 1w3b_A           87 IEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-  165 (388)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-
Confidence            66666555544433 345556666666666666666665543   2233455556666666666666666666665532 


Q ss_pred             CCCHHHHHHHHHHHhccchhHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHhccC---CCChhhHHHHH
Q 007573          301 QPDDATLVSVFTACSALQLLNEGRQSHVLVIRNGFEANVSVCNAVITMYSRCGGILDSELAFRQIH---SPNLVSWNTII  377 (597)
Q Consensus       301 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li  377 (597)
                      +.+..++..+...+...|++++|...++.+++.+ +.+...+..+...+...|++++|...+++..   +.+..++..+.
T Consensus       166 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~  244 (388)
T 1w3b_A          166 PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLA  244 (388)
T ss_dssp             TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHH
Confidence            2234555556666666666666666666666654 3445667777788888888888888887664   45677888899


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCH
Q 007573          378 AAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQL  457 (597)
Q Consensus       378 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~  457 (597)
                      ..+...|++++|++.|+++.+.. +.+..++..+..++.+.|++++|.+.|+++.+.  .+.+..++..++..+.+.|++
T Consensus       245 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~  321 (388)
T 1w3b_A          245 CVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRL--CPTHADSLNNLANIKREQGNI  321 (388)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCH
T ss_pred             HHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHcCCH
Confidence            99999999999999999998763 334678888999999999999999999999874  345688899999999999999


Q ss_pred             HHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCC
Q 007573          458 EKAWQITQGMP-FEA-DTGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGM  522 (597)
Q Consensus       458 ~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~  522 (597)
                      ++|.+.++++. ..| +..++..++.++...|++++|+..++++++++|+++.++..++.++...|+
T Consensus       322 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~  388 (388)
T 1w3b_A          322 EEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD  388 (388)
T ss_dssp             HHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence            99999998876 444 567899999999999999999999999999999999999999998887764

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.96  E-value=3e-26  Score=228.72  Aligned_cols=351  Identities=12%  Similarity=0.074  Sum_probs=307.5

Q ss_pred             HHHHHHhCCChhHHHHHHHhcc--cC-CcchHHHHHHHHHcCCChHHHHHHHhhcCCCCC-CchHHHHHHHHHHhcCCHH
Q 007573          180 MLDGFMKKGEVDKARALSDYMS--FK-NVVSWTVMITGYVKNERFCEARELFYRMPDYDK-NVFVVTAMITGFCKVGMLE  255 (597)
Q Consensus       180 li~~~~~~g~~~~A~~~~~~m~--~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~  255 (597)
                      +...+.+.|++++|++.+..+.  .| +...+..+...+...|++++|...++.+.+..| +..++..+...|.+.|+++
T Consensus         5 ~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~   84 (388)
T 1w3b_A            5 LAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQ   84 (388)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHH
Confidence            4567788999999999998883  34 456677788889999999999999999888666 5678999999999999999


Q ss_pred             HHHHHHhhcC---CCChhHHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCH-HHHHHHHHHHhccchhHHHHHHHHHHH
Q 007573          256 NARLLFERIQ---PKDCVSFNAMIAGYAQNGVAEEALRLFSGMIKMDMQPDD-ATLVSVFTACSALQLLNEGRQSHVLVI  331 (597)
Q Consensus       256 ~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~  331 (597)
                      +|...|+++.   +.+..+|..++.++.+.|++++|+..|+++.+.  .|+. ..+..+...+...|++++|...+..++
T Consensus        85 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al  162 (388)
T 1w3b_A           85 EAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY--NPDLYCVRSDLGNLLKALGRLEEAKACYLKAI  162 (388)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--CTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence            9999999864   446678999999999999999999999999885  4544 455667778888999999999999999


Q ss_pred             HhCCCCcccHHHHHHHHHHhcCCHHHHHHHHhccC---CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHH
Q 007573          332 RNGFEANVSVCNAVITMYSRCGGILDSELAFRQIH---SPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITF  408 (597)
Q Consensus       332 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~  408 (597)
                      +.. +.+..++..+...+.+.|++++|...|+++.   +.+...|..+...+...|++++|+..+++..... +.+..++
T Consensus       163 ~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~  240 (388)
T 1w3b_A          163 ETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVH  240 (388)
T ss_dssp             HHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHH
T ss_pred             HhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHH
Confidence            875 5567889999999999999999999999886   4567789999999999999999999999998753 3347788


Q ss_pred             HHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHhc
Q 007573          409 LSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMP--FEADTGVWGSLLAACVIN  486 (597)
Q Consensus       409 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~  486 (597)
                      ..+..++...|++++|.+.|+++.+.  .+.++..|..++.+|.+.|++++|.+.++++.  .+++..++..++..+...
T Consensus       241 ~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  318 (388)
T 1w3b_A          241 GNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQ  318 (388)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHc
Confidence            99999999999999999999999863  23347889999999999999999999999876  455788999999999999


Q ss_pred             CCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHhC
Q 007573          487 LNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRVRLLMKEQ  536 (597)
Q Consensus       487 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  536 (597)
                      |++++|+..++++++..|+++.++..++.+|.+.|++++|.+.++++.+.
T Consensus       319 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~  368 (388)
T 1w3b_A          319 GNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI  368 (388)
T ss_dssp             TCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            99999999999999999999999999999999999999999999999863

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=99.95  E-value=2.8e-27  Score=240.13  Aligned_cols=184  Identities=14%  Similarity=0.139  Sum_probs=171.2

Q ss_pred             hHHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhcc---------chhHHHHHHHHHHHHhCCCCccc
Q 007573          270 VSFNAMIAGYAQNGVAEEALRLFSGMIKMDMQPDDATLVSVFTACSAL---------QLLNEGRQSHVLVIRNGFEANVS  340 (597)
Q Consensus       270 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~  340 (597)
                      ..++.+|.+|++.|+.++|+++|++|.+.|++||..||+++|.+|+..         +.++.|.+++++|.+.|+.||..
T Consensus        27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~  106 (501)
T 4g26_A           27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA  106 (501)
T ss_dssp             HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence            468889999999999999999999999999999999999999999754         45788999999999999999999


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHhccC----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHh
Q 007573          341 VCNAVITMYSRCGGILDSELAFRQIH----SPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACG  416 (597)
Q Consensus       341 ~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~  416 (597)
                      +|+++|.+|++.|++++|.++|++|.    .||..+|+++|.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|+
T Consensus       107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~  186 (501)
T 4g26_A          107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSM  186 (501)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence            99999999999999999999999986    68999999999999999999999999999999999999999999999999


Q ss_pred             ccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhc
Q 007573          417 HAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRA  454 (597)
Q Consensus       417 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~  454 (597)
                      +.|++++|.+++++|... +..|+..||+.++..+...
T Consensus       187 ~~g~~d~A~~ll~~Mr~~-g~~ps~~T~~~l~~~F~s~  223 (501)
T 4g26_A          187 DTKNADKVYKTLQRLRDL-VRQVSKSTFDMIEEWFKSE  223 (501)
T ss_dssp             HTTCHHHHHHHHHHHHHH-TSSBCHHHHHHHHHHHHSH
T ss_pred             hCCCHHHHHHHHHHHHHh-CCCcCHHHHHHHHHHHhcC
Confidence            999999999999999887 9999999999999988753

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=99.94  E-value=5.9e-26  Score=230.42  Aligned_cols=199  Identities=16%  Similarity=0.152  Sum_probs=171.8

Q ss_pred             hHHHHHHHHhHHCCCCCC-HHHHHHHHHHHhccchhHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCC---------H
Q 007573          286 EEALRLFSGMIKMDMQPD-DATLVSVFTACSALQLLNEGRQSHVLVIRNGFEANVSVCNAVITMYSRCGG---------I  355 (597)
Q Consensus       286 ~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---------~  355 (597)
                      ..+..+.+++.+.++.+. ...+..+|.+|++.|++++|.+++++|.+.|+.||..+||+||.+|++.+.         +
T Consensus         7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l   86 (501)
T 4g26_A            7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGL   86 (501)
T ss_dssp             -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHH
T ss_pred             chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchH
Confidence            345566677777776654 346888999999999999999999999999999999999999999988764         6


Q ss_pred             HHHHHHHhccC----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHh
Q 007573          356 LDSELAFRQIH----SPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFELM  431 (597)
Q Consensus       356 ~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~  431 (597)
                      +.|.++|++|.    .||..+|+++|.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|++.|++++|.++|++|
T Consensus        87 ~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M  166 (501)
T 4g26_A           87 SRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHM  166 (501)
T ss_dssp             HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHH
Confidence            88999999986    69999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC---CCCCHHHHHHHHHHHHh
Q 007573          432 VKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMP---FEADTGVWGSLLAACVI  485 (597)
Q Consensus       432 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~p~~~~~~~l~~~~~~  485 (597)
                      .+. |+.||..+|++|+.+|++.|+.++|.+++++|.   ..|+..||+.++..+..
T Consensus       167 ~~~-G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s  222 (501)
T 4g26_A          167 VES-EVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS  222 (501)
T ss_dssp             HHT-TCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred             Hhc-CCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence            887 999999999999999999999999999999997   78999999999988765

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.93  E-value=1.2e-23  Score=218.26  Aligned_cols=419  Identities=11%  Similarity=0.001  Sum_probs=284.7

Q ss_pred             hHHHHHHHHHcCCChHHHHHHHccCC--CCChhhHHHHHHHHHcCCChHHHHHHHccCCC---CCchhHHHHHHHHHhCC
Q 007573          114 SWNCMIAGCIDNDRIDDAFDYFQAMP--ERNTATYNAMISGFLKHGRLEEATRLFEQMPR---RNVISYTAMLDGFMKKG  188 (597)
Q Consensus       114 ~~~~ll~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g  188 (597)
                      .+......+.+.|++++|...|+++.  .|++.++..+..+|.+.|++++|...++++.+   .+..+|..+..++.+.|
T Consensus         8 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g   87 (514)
T 2gw1_A            8 ALKDKGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLG   87 (514)
T ss_dssp             HHHHHHHHHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHh
Confidence            34455555666666666666666655  34555666666666666666666666655442   23345556666666666


Q ss_pred             ChhHHHHHHHhccc---CCcchHHHHHHHHHcCCChHHHHHHHhhcCCC--CCCchHHHH---HHHHHHhcCCHHHHHHH
Q 007573          189 EVDKARALSDYMSF---KNVVSWTVMITGYVKNERFCEARELFYRMPDY--DKNVFVVTA---MITGFCKVGMLENARLL  260 (597)
Q Consensus       189 ~~~~A~~~~~~m~~---~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~---l~~~~~~~g~~~~A~~~  260 (597)
                      ++++|+..|+++..   ++......++..+........+.+.+..+...  .|+......   .............+...
T Consensus        88 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (514)
T 2gw1_A           88 KFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASF  167 (514)
T ss_dssp             CHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHH
T ss_pred             hHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHH
Confidence            66666666655521   12223333333332222222222222111100  000000000   00000001111111112


Q ss_pred             HhhcC----------CCChhHHHHHHHHHHH---cCChhHHHHHHHHhHH-----CCCCC--------CHHHHHHHHHHH
Q 007573          261 FERIQ----------PKDCVSFNAMIAGYAQ---NGVAEEALRLFSGMIK-----MDMQP--------DDATLVSVFTAC  314 (597)
Q Consensus       261 ~~~~~----------~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~-----~g~~p--------~~~~~~~ll~~~  314 (597)
                      +....          +.+...+......+..   .|++++|+..|+++.+     ....|        +...+..+...+
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (514)
T 2gw1_A          168 FGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFK  247 (514)
T ss_dssp             HTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHH
Confidence            22111          1124455555555554   8999999999999987     32222        244666777788


Q ss_pred             hccchhHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHhccC---CCChhhHHHHHHHHHHcCCHHHHHH
Q 007573          315 SALQLLNEGRQSHVLVIRNGFEANVSVCNAVITMYSRCGGILDSELAFRQIH---SPNLVSWNTIIAAFAQHGHYEKALI  391 (597)
Q Consensus       315 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~  391 (597)
                      ...|+++.|...+..+.+....  ..++..+...|...|++++|...++.+.   +.+...|..+...+...|++++|+.
T Consensus       248 ~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~  325 (514)
T 2gw1_A          248 FLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGK  325 (514)
T ss_dssp             HHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHH
T ss_pred             HHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHH
Confidence            8999999999999999988644  7888899999999999999999998875   4567789999999999999999999


Q ss_pred             HHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC---
Q 007573          392 FFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMP---  468 (597)
Q Consensus       392 ~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---  468 (597)
                      .++++.+.. +.+..++..+...+...|++++|...++.+.+.  .+.+...+..++..|.+.|++++|.+.++++.   
T Consensus       326 ~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~  402 (514)
T 2gw1_A          326 DFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRK--FPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELE  402 (514)
T ss_dssp             HHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--cccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhh
Confidence            999998864 345778888999999999999999999999875  23357788999999999999999999998865   


Q ss_pred             -CCCC----HHHHHHHHHHHHh---cCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHhCC
Q 007573          469 -FEAD----TGVWGSLLAACVI---NLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRVRLLMKEQG  537 (597)
Q Consensus       469 -~~p~----~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  537 (597)
                       ..++    ...+..++..+..   .|++++|+..++++++.+|+++.++..++.+|...|++++|.+.++++.+..
T Consensus       403 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  479 (514)
T 2gw1_A          403 NKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLA  479 (514)
T ss_dssp             HTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             hccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhc
Confidence             2222    4488999999999   9999999999999999999999999999999999999999999999998754

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.92  E-value=1.6e-23  Score=217.17  Aligned_cols=428  Identities=8%  Similarity=-0.016  Sum_probs=321.7

Q ss_pred             chHHHHHHHHHhCCChhHHHHHHhhCCC--CCcchHHHHHHHHHcCCChHHHHHHHccCC---CCChhhHHHHHHHHHcC
Q 007573           82 ITWNAIITGYWQNGFLQESKNLFQSMPV--KNIVSWNCMIAGCIDNDRIDDAFDYFQAMP---ERNTATYNAMISGFLKH  156 (597)
Q Consensus        82 ~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~  156 (597)
                      ..|......+.+.|++++|+..|+++.+  |+..+|..+..++.+.|++++|...++.+.   +.+..++..+..+|.+.
T Consensus         7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~   86 (514)
T 2gw1_A            7 LALKDKGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGL   86 (514)
T ss_dssp             HHHHHHHHHHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHH
Confidence            4577788899999999999999999974  688899999999999999999999999887   55678999999999999


Q ss_pred             CChHHHHHHHccCCC---CCchhHHHHHHHHHhCCChhHHHHHHHhcc----cCCcchHHHH---HHHHHcCCChHHHHH
Q 007573          157 GRLEEATRLFEQMPR---RNVISYTAMLDGFMKKGEVDKARALSDYMS----FKNVVSWTVM---ITGYVKNERFCEARE  226 (597)
Q Consensus       157 g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~~~~~~~~l---l~~~~~~g~~~~a~~  226 (597)
                      |++++|...|+++..   ++......++..+........+.+.+..+.    .++...+..-   ...............
T Consensus        87 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (514)
T 2gw1_A           87 GKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMAS  166 (514)
T ss_dssp             TCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHH
T ss_pred             hhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHH
Confidence            999999999998753   334444455555544433333333332220    0111111100   011111111222222


Q ss_pred             HHhhcCC--------CCCCchHHHHHHHHHHh---cCCHHHHHHHHhhcCC-----------------CChhHHHHHHHH
Q 007573          227 LFYRMPD--------YDKNVFVVTAMITGFCK---VGMLENARLLFERIQP-----------------KDCVSFNAMIAG  278 (597)
Q Consensus       227 ~~~~~~~--------~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~-----------------~~~~~~~~li~~  278 (597)
                      .+.....        .+.+...+..+...+..   .|++++|...|+++..                 .+..+|..+...
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (514)
T 2gw1_A          167 FFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIF  246 (514)
T ss_dssp             HHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHH
Confidence            2222211        01123344444554554   8899999998887543                 134578888999


Q ss_pred             HHHcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhccchhHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHH
Q 007573          279 YAQNGVAEEALRLFSGMIKMDMQPDDATLVSVFTACSALQLLNEGRQSHVLVIRNGFEANVSVCNAVITMYSRCGGILDS  358 (597)
Q Consensus       279 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A  358 (597)
                      +...|++++|+..|+++.+..  |+...+..+...+...|+++.|...+..+.+.. +.+..++..+...|...|++++|
T Consensus       247 ~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A  323 (514)
T 2gw1_A          247 KFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQA  323 (514)
T ss_dssp             HHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHH
T ss_pred             HHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHH
Confidence            999999999999999998864  337778888888999999999999999988765 55677899999999999999999


Q ss_pred             HHHHhccC---CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhc
Q 007573          359 ELAFRQIH---SPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMVKVY  435 (597)
Q Consensus       359 ~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~  435 (597)
                      ...+++..   +.+...+..+...+...|++++|+..++++.+.. +.+..++..+...+...|++++|...++.+.+..
T Consensus       324 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~  402 (514)
T 2gw1_A          324 GKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELE  402 (514)
T ss_dssp             HHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhh
Confidence            99998875   5567789999999999999999999999998753 3457788889999999999999999999988753


Q ss_pred             CCCCC----hHHHHHHHHHHhh---cCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 007573          436 GIIPS----SEHYTCLVDILSR---AGQLEKAWQITQGMP--FEADTGVWGSLLAACVINLNVELGELAAKKMRELDPQN  506 (597)
Q Consensus       436 ~~~p~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~  506 (597)
                      .-.++    ...+..++..|..   .|++++|.+.++++.  .+.+..++..+...+...|++++|...++++++++|++
T Consensus       403 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~  482 (514)
T 2gw1_A          403 NKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTM  482 (514)
T ss_dssp             HTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSH
T ss_pred             hccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcccc
Confidence            33333    3488999999999   999999999998875  33467788999999999999999999999999999998


Q ss_pred             CchHHHH
Q 007573          507 SAVYVML  513 (597)
Q Consensus       507 ~~~~~~l  513 (597)
                      +..+..+
T Consensus       483 ~~~~~~~  489 (514)
T 2gw1_A          483 EEKLQAI  489 (514)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            7776655

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.92  E-value=2e-23  Score=217.78  Aligned_cols=416  Identities=11%  Similarity=0.042  Sum_probs=212.0

Q ss_pred             chHHHHHHHHHhCCChhHHHHHHhhCCC---CCcchHHHHHHHHHcCCChHHHHHHHccCC---CCChhhHHHHHHHHHc
Q 007573           82 ITWNAIITGYWQNGFLQESKNLFQSMPV---KNIVSWNCMIAGCIDNDRIDDAFDYFQAMP---ERNTATYNAMISGFLK  155 (597)
Q Consensus        82 ~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~  155 (597)
                      ..|..+...+.+.|++++|+..|+++..   .++.+|..+..++.+.|++++|.+.++++.   +.+..++..+..++..
T Consensus        26 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  105 (537)
T 3fp2_A           26 VQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANES  105 (537)
T ss_dssp             HHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence            4566667777777777777777777653   266677777777777777777777777765   4455666777777777


Q ss_pred             CCChHHHHHHHccCCCCCchhHHHHHHHHHhCCChhHHHHHHHhcccC------CcchHHHHHHHHHcCCChHHHHHHHh
Q 007573          156 HGRLEEATRLFEQMPRRNVISYTAMLDGFMKKGEVDKARALSDYMSFK------NVVSWTVMITGYVKNERFCEARELFY  229 (597)
Q Consensus       156 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------~~~~~~~ll~~~~~~g~~~~a~~~~~  229 (597)
                      .|++++|...|+.+ ..++......+..+...+....|...++.+...      ........+..+....+.+.+...+.
T Consensus       106 ~g~~~~A~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (537)
T 3fp2_A          106 LGNFTDAMFDLSVL-SLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVN  184 (537)
T ss_dssp             HTCHHHHHHHHHHH-C-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSC
T ss_pred             cCCHHHHHHHHHHH-hcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHh
Confidence            77777777777533 222222233344444455556666666666321      11222333444555555555555555


Q ss_pred             hcCCCCCCch-HHHHHHHHHHh--------cCCHHHHHHHHhhcCCC---Ch-------hHHHHHHHHHHHcCChhHHHH
Q 007573          230 RMPDYDKNVF-VVTAMITGFCK--------VGMLENARLLFERIQPK---DC-------VSFNAMIAGYAQNGVAEEALR  290 (597)
Q Consensus       230 ~~~~~~~~~~-~~~~l~~~~~~--------~g~~~~A~~~~~~~~~~---~~-------~~~~~li~~~~~~g~~~~A~~  290 (597)
                      ......+... ....+...+..        .|++++|..+++++.+.   +.       .++..+...+...|++++|+.
T Consensus       185 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~  264 (537)
T 3fp2_A          185 TSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQV  264 (537)
T ss_dssp             CCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             hccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHH
Confidence            5444333222 22222222221        23566666666655432   11       134455555666666666666


Q ss_pred             HHHHhHHCCCCCCHHHHHHHHHHHhccchhHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHhccCCCCh
Q 007573          291 LFSGMIKMDMQPDDATLVSVFTACSALQLLNEGRQSHVLVIRNGFEANVSVCNAVITMYSRCGGILDSELAFRQIHSPNL  370 (597)
Q Consensus       291 ~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  370 (597)
                      .|+++.+.  .|+...+..+...+...|+++.|...+..+.+.. +.+..                              
T Consensus       265 ~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~------------------------------  311 (537)
T 3fp2_A          265 LLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPP------------------------------  311 (537)
T ss_dssp             HHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHH------------------------------
T ss_pred             HHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHH------------------------------
Confidence            66666653  3344455555555555566666666555555543 22334                              


Q ss_pred             hhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHH
Q 007573          371 VSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDI  450 (597)
Q Consensus       371 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~  450 (597)
                       +|..+...+...|++++|++.++++.+.. +.+...+..+...+...|++++|...++.+.+.  .+.+...+..+...
T Consensus       312 -~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~  387 (537)
T 3fp2_A          312 -TYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLK--FPTLPEVPTFFAEI  387 (537)
T ss_dssp             -HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHH
T ss_pred             -HHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHH
Confidence             44444444444555555555554444432 122334444444445555555555555544432  12223444444555


Q ss_pred             HhhcCCHHHHHHHHhhCC-C---C----CCHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHhcCCCCCchHHH
Q 007573          451 LSRAGQLEKAWQITQGMP-F---E----ADTGVWGSLLAACVIN----------LNVELGELAAKKMRELDPQNSAVYVM  512 (597)
Q Consensus       451 ~~~~g~~~~A~~~~~~~~-~---~----p~~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~p~~~~~~~~  512 (597)
                      |...|++++|.+.++++. .   .    .....+..+...+...          |++++|+..++++++.+|+++.++..
T Consensus       388 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~  467 (537)
T 3fp2_A          388 LTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIG  467 (537)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHH
Confidence            555555555555544432 0   0    0111223333344444          55555555555555555555555555


Q ss_pred             HHHHHHhcCCcHHHHHHHHHHHh
Q 007573          513 LSNLYAAAGMWRDVTRVRLLMKE  535 (597)
Q Consensus       513 l~~~~~~~g~~~~A~~~~~~~~~  535 (597)
                      ++.+|...|++++|.+.++++.+
T Consensus       468 l~~~~~~~g~~~~A~~~~~~al~  490 (537)
T 3fp2_A          468 LAQLKLQMEKIDEAIELFEDSAI  490 (537)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhccHHHHHHHHHHHHH
Confidence            55555555555555555555544

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.92  E-value=2.6e-22  Score=204.43  Aligned_cols=333  Identities=11%  Similarity=0.044  Sum_probs=229.8

Q ss_pred             chhHHHHHHHHHhCCChhHHHHHHHhcc---cCCcchHHHHHHHHHcCCChHHHHHHHhhcCCCCCC-chHHHHHHHHHH
Q 007573          174 VISYTAMLDGFMKKGEVDKARALSDYMS---FKNVVSWTVMITGYVKNERFCEARELFYRMPDYDKN-VFVVTAMITGFC  249 (597)
Q Consensus       174 ~~~~~~li~~~~~~g~~~~A~~~~~~m~---~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~l~~~~~  249 (597)
                      +..+..++..+.+.|++++|+.+|+++.   +.+..++..++.++...|++++|...++.+.+..|+ ..++..++.+|.
T Consensus        26 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  105 (450)
T 2y4t_A           26 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLL  105 (450)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence            3445556666666666666666666552   123455555555555556666666555555553332 334444555555


Q ss_pred             hcCCHHHHHHHHhhcCCC---Ch---hHHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhccchhHHH
Q 007573          250 KVGMLENARLLFERIQPK---DC---VSFNAMIAGYAQNGVAEEALRLFSGMIKMDMQPDDATLVSVFTACSALQLLNEG  323 (597)
Q Consensus       250 ~~g~~~~A~~~~~~~~~~---~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a  323 (597)
                      +.|++++|...|+++...   +.   ..|..++..+...+                       +......+...|++++|
T Consensus       106 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----------------------~~~~a~~~~~~~~~~~A  162 (450)
T 2y4t_A          106 KQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQR-----------------------LRSQALNAFGSGDYTAA  162 (450)
T ss_dssp             HTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHTCHHHH
T ss_pred             HcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHcCCHHHH
Confidence            555555555555444321   11   33333332211100                       11122335566777777


Q ss_pred             HHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHhccC---CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 007573          324 RQSHVLVIRNGFEANVSVCNAVITMYSRCGGILDSELAFRQIH---SPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNG  400 (597)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g  400 (597)
                      ...+..+.+.. +.+..++..++.+|.+.|++++|...|+++.   +.+..+|..++..|...|++++|+..|+++... 
T Consensus       163 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-  240 (450)
T 2y4t_A          163 IAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKL-  240 (450)
T ss_dssp             HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-
Confidence            77777777654 4567778888899999999999999998876   567889999999999999999999999999864 


Q ss_pred             CCCC-hHHHHHH------------HHHHhccCcHHHHHHHHHHhHHhcCCCCC--hHHHHHHHHHHhhcCCHHHHHHHHh
Q 007573          401 FDPD-GITFLSL------------LSACGHAGKVNESMDLFELMVKVYGIIPS--SEHYTCLVDILSRAGQLEKAWQITQ  465 (597)
Q Consensus       401 ~~p~-~~~~~~l------------l~~~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~  465 (597)
                       .|+ ...+..+            ...+.+.|++++|...|+.+.+...-.|.  ..++..++.++.+.|++++|.+.++
T Consensus       241 -~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~  319 (450)
T 2y4t_A          241 -DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCS  319 (450)
T ss_dssp             -CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred             -CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence             454 3344433            78889999999999999999875221111  4578889999999999999999999


Q ss_pred             hCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHH------------HHhcC-----CcHHH
Q 007573          466 GMP-FEA-DTGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNL------------YAAAG-----MWRDV  526 (597)
Q Consensus       466 ~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~------------~~~~g-----~~~~A  526 (597)
                      ++. ..| +..+|..++.+|...|++++|+..++++++++|+++.++..++.+            |...|     +.+++
T Consensus       320 ~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~  399 (450)
T 2y4t_A          320 EVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEI  399 (450)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHH
T ss_pred             HHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHH
Confidence            875 344 688999999999999999999999999999999999999988844            44455     55666


Q ss_pred             HHHHHH
Q 007573          527 TRVRLL  532 (597)
Q Consensus       527 ~~~~~~  532 (597)
                      .+.+++
T Consensus       400 ~~~y~~  405 (450)
T 2y4t_A          400 IKAYRK  405 (450)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            777765

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.91  E-value=1.1e-22  Score=212.21  Aligned_cols=428  Identities=10%  Similarity=0.051  Sum_probs=304.2

Q ss_pred             CcchHHHHHHHHHhcCChHHHHHHHhhcCC---CCcchHHHHHHHHHhCCChhHHHHHHhhCCC--C-CcchHHHHHHHH
Q 007573           49 YVFVNNAKISALSRAGKISAARQLFDQMTT---KDVITWNAIITGYWQNGFLQESKNLFQSMPV--K-NIVSWNCMIAGC  122 (597)
Q Consensus        49 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~ll~~~  122 (597)
                      ....+..+...+.+.|++++|...|+++..   .++.+|..+..+|.+.|++++|+..|+++.+  | +..++..+..++
T Consensus        24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~  103 (537)
T 3fp2_A           24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASAN  103 (537)
T ss_dssp             HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence            346788899999999999999999999865   4667899999999999999999999999863  3 778899999999


Q ss_pred             HcCCChHHHHHHHccCCCCChhhHHHHHHHHHcCCChHHHHHHHccCCCC------CchhHHHHHHHHHhCCChhHHHHH
Q 007573          123 IDNDRIDDAFDYFQAMPERNTATYNAMISGFLKHGRLEEATRLFEQMPRR------NVISYTAMLDGFMKKGEVDKARAL  196 (597)
Q Consensus       123 ~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~  196 (597)
                      ...|++++|...++.+ ..++......+..+...+....|...++++...      ........+..+....+.+.+...
T Consensus       104 ~~~g~~~~A~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (537)
T 3fp2_A          104 ESLGNFTDAMFDLSVL-SLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSS  182 (537)
T ss_dssp             HHHTCHHHHHHHHHHH-C-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHT
T ss_pred             HHcCCHHHHHHHHHHH-hcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHH
Confidence            9999999999999744 333333334455666667778899999887642      222345556677788888888887


Q ss_pred             HHhcccCCcc---hHHHHHHHHHcC--------CChHHHHHHHhhcCCCCCCc--------hHHHHHHHHHHhcCCHHHH
Q 007573          197 SDYMSFKNVV---SWTVMITGYVKN--------ERFCEARELFYRMPDYDKNV--------FVVTAMITGFCKVGMLENA  257 (597)
Q Consensus       197 ~~~m~~~~~~---~~~~ll~~~~~~--------g~~~~a~~~~~~~~~~~~~~--------~~~~~l~~~~~~~g~~~~A  257 (597)
                      +......+..   ....+...+...        |++++|..+++.+.+..|+.        .++..+...+...|++++|
T Consensus       183 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A  262 (537)
T 3fp2_A          183 VNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDA  262 (537)
T ss_dssp             SCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHH
Confidence            7777655543   444444444333        47899999999999877763        2466777888999999999


Q ss_pred             HHHHhhcCC--CChhHHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhccchhHHHHHHHHHHHHhCC
Q 007573          258 RLLFERIQP--KDCVSFNAMIAGYAQNGVAEEALRLFSGMIKMDMQPDDATLVSVFTACSALQLLNEGRQSHVLVIRNGF  335 (597)
Q Consensus       258 ~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~  335 (597)
                      ...|++...  ++...|..+...+...|++++|+..|+++.+.. +.+..++..+...+...|++++|...+..+.+.. 
T Consensus       263 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-  340 (537)
T 3fp2_A          263 QVLLQESINLHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-  340 (537)
T ss_dssp             HHHHHHHHHHCCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHhcCCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-
Confidence            999998753  457789999999999999999999999998764 3356667777777777788888877777776654 


Q ss_pred             CCcccHHHHHHHHHHhcCCHHHHHHHHhccCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHH
Q 007573          336 EANVSVCNAVITMYSRCGGILDSELAFRQIHSPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSAC  415 (597)
Q Consensus       336 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~  415 (597)
                                                     +.+...|..+...+...|++++|++.++++.+.. +.+...+..+...+
T Consensus       341 -------------------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~  388 (537)
T 3fp2_A          341 -------------------------------PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEIL  388 (537)
T ss_dssp             -------------------------------TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHH
T ss_pred             -------------------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHH
Confidence                                           2233445555556666666666666666666542 33345666666666


Q ss_pred             hccCcHHHHHHHHHHhHHhcCCCC----ChHHHHHHHHHHhhc----------CCHHHHHHHHhhCC--CCCCHHHHHHH
Q 007573          416 GHAGKVNESMDLFELMVKVYGIIP----SSEHYTCLVDILSRA----------GQLEKAWQITQGMP--FEADTGVWGSL  479 (597)
Q Consensus       416 ~~~g~~~~a~~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~--~~p~~~~~~~l  479 (597)
                      ...|++++|...++.+.+...-.+    ....+..+...|.+.          |++++|...++++.  .+.+...+..+
T Consensus       389 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l  468 (537)
T 3fp2_A          389 TDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGL  468 (537)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            667777777777766654321111    122234445666666          88888888887765  33456788888


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhcCCCCCchHH
Q 007573          480 LAACVINLNVELGELAAKKMRELDPQNSAVYV  511 (597)
Q Consensus       480 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~  511 (597)
                      ...+...|++++|...+++++++.|.++....
T Consensus       469 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  500 (537)
T 3fp2_A          469 AQLKLQMEKIDEAIELFEDSAILARTMDEKLQ  500 (537)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHC--CHHHHH
T ss_pred             HHHHHHhccHHHHHHHHHHHHHhCCCcHHHHH
Confidence            88899999999999999999999988765433

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.90  E-value=1.2e-21  Score=199.47  Aligned_cols=361  Identities=11%  Similarity=0.043  Sum_probs=244.1

Q ss_pred             CCChhhHHHHHHHHHcCCChHHHHHHHccCCC---CCchhHHHHHHHHHhCCChhHHHHHHHhccc---CCcchHHHHHH
Q 007573          140 ERNTATYNAMISGFLKHGRLEEATRLFEQMPR---RNVISYTAMLDGFMKKGEVDKARALSDYMSF---KNVVSWTVMIT  213 (597)
Q Consensus       140 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~ll~  213 (597)
                      +.+..++..++..|.+.|++++|..+|+++.+   .+..+|..+..++...|++++|+..|+++..   .+..++..++.
T Consensus        23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~  102 (450)
T 2y4t_A           23 MADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGH  102 (450)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence            44677899999999999999999999998763   4678899999999999999999999999843   35678899999


Q ss_pred             HHHcCCChHHHHHHHhhcCCCCCCc----hHHHHHHH------------HHHhcCCHHHHHHHHhhcC---CCChhHHHH
Q 007573          214 GYVKNERFCEARELFYRMPDYDKNV----FVVTAMIT------------GFCKVGMLENARLLFERIQ---PKDCVSFNA  274 (597)
Q Consensus       214 ~~~~~g~~~~a~~~~~~~~~~~~~~----~~~~~l~~------------~~~~~g~~~~A~~~~~~~~---~~~~~~~~~  274 (597)
                      +|...|++++|.+.|+.+.+..|+.    ..+..++.            .+.+.|++++|...|+++.   +.+...+..
T Consensus       103 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~  182 (450)
T 2y4t_A          103 LLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELREL  182 (450)
T ss_dssp             HHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHH
Confidence            9999999999999999999977764    44554533            3666777777777776643   345566667


Q ss_pred             HHHHHHHcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhccchhHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCC
Q 007573          275 MIAGYAQNGVAEEALRLFSGMIKMDMQPDDATLVSVFTACSALQLLNEGRQSHVLVIRNGFEANVSVCNAVITMYSRCGG  354 (597)
Q Consensus       275 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  354 (597)
                      ++..|.+.|++++|+..|+++.+.. +.+..++..+...+...|+.++|...++.+.+.. +.+...+..+... .    
T Consensus       183 l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~-~----  255 (450)
T 2y4t_A          183 RAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQV-K----  255 (450)
T ss_dssp             HHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH-H----
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CChHHHHHHHHHH-H----
Confidence            7777777777777777777666532 2234455555555555555555555555555432 1111111111000 0    


Q ss_pred             HHHHHHHHhccCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-----hHHHHHHHHHHhccCcHHHHHHHHH
Q 007573          355 ILDSELAFRQIHSPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPD-----GITFLSLLSACGHAGKVNESMDLFE  429 (597)
Q Consensus       355 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~  429 (597)
                                    ....+..+...+...|++++|+..|+++.+.  .|+     ...+..+..++.+.|++++|...++
T Consensus       256 --------------~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~  319 (450)
T 2y4t_A          256 --------------KLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCS  319 (450)
T ss_dssp             --------------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred             --------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence                          0001122367777888888888888888764  344     3356777778888888888888888


Q ss_pred             HhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCCC-HHHHHHHHHH------------HHhcC-----CHH
Q 007573          430 LMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMP-FEAD-TGVWGSLLAA------------CVINL-----NVE  490 (597)
Q Consensus       430 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~------------~~~~g-----~~~  490 (597)
                      .+.+.  .+.+...+..++.+|...|++++|.+.++++. ..|+ ...+..+..+            |...|     +.+
T Consensus       320 ~a~~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~  397 (450)
T 2y4t_A          320 EVLQM--EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQ  397 (450)
T ss_dssp             HHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTT
T ss_pred             HHHHh--CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHH
Confidence            87753  23357778888888888888888888887764 4454 4555555532            33334     567


Q ss_pred             HHHHHHHH-HHhcCCCCCc----------hHHHHHHHHHhcCCcHH
Q 007573          491 LGELAAKK-MRELDPQNSA----------VYVMLSNLYAAAGMWRD  525 (597)
Q Consensus       491 ~a~~~~~~-~~~~~p~~~~----------~~~~l~~~~~~~g~~~~  525 (597)
                      ++.+.+++ +++..|++..          .+..+..+|...|+.++
T Consensus       398 ~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~  443 (450)
T 2y4t_A          398 EIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEM  443 (450)
T ss_dssp             HHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGG
T ss_pred             HHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHH
Confidence            78888886 7777777522          34445555555555443

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.86  E-value=7.6e-19  Score=172.64  Aligned_cols=305  Identities=12%  Similarity=0.035  Sum_probs=235.9

Q ss_pred             CcchHHHHHHHHHcCCChHHHHHHHhhcCCCCC-CchHHHHHHHHHHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHH
Q 007573          204 NVVSWTVMITGYVKNERFCEARELFYRMPDYDK-NVFVVTAMITGFCKVGMLENARLLFERIQ---PKDCVSFNAMIAGY  279 (597)
Q Consensus       204 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~  279 (597)
                      |+..+..+...+...|++++|...|+.+.+..| +..++..+...+...|++++|...|+++.   +.+...|..+...+
T Consensus         2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~   81 (359)
T 3ieg_A            2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL   81 (359)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence            345677888889999999999999999888665 45678888899999999999999998764   34667888999999


Q ss_pred             HHcCChhHHHHHHHHhHHCCCCC---CHHH-HHHHHHHHhccchhHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCH
Q 007573          280 AQNGVAEEALRLFSGMIKMDMQP---DDAT-LVSVFTACSALQLLNEGRQSHVLVIRNGFEANVSVCNAVITMYSRCGGI  355 (597)
Q Consensus       280 ~~~g~~~~A~~~~~~m~~~g~~p---~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  355 (597)
                      ...|++++|+..|+++.+.  .|   +... +..+..       ....                ..+..+...+...|++
T Consensus        82 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~-------~~~~----------------~~~~~~a~~~~~~~~~  136 (359)
T 3ieg_A           82 LKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVK-------ADEM----------------QRLRSQALDAFDGADY  136 (359)
T ss_dssp             HHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHH-------HHHH----------------HHHHHHHHHHHHTTCH
T ss_pred             HHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHH-------HHHH----------------HHHHHHHHHHHHccCH
Confidence            9999999999999988874  44   2222 211111       1000                1123345677788888


Q ss_pred             HHHHHHHhccC---CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhH
Q 007573          356 LDSELAFRQIH---SPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMV  432 (597)
Q Consensus       356 ~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~  432 (597)
                      ++|...++.+.   +.+...+..+...+...|++++|+..++++.+.. +.+..++..+...+...|++++|...++.+.
T Consensus       137 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~  215 (359)
T 3ieg_A          137 TAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECL  215 (359)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            88888888765   5567788888888889999999999999888653 4457788888888888999999999998887


Q ss_pred             HhcCCCCChHHHH------------HHHHHHhhcCCHHHHHHHHhhCC-CCCC-H----HHHHHHHHHHHhcCCHHHHHH
Q 007573          433 KVYGIIPSSEHYT------------CLVDILSRAGQLEKAWQITQGMP-FEAD-T----GVWGSLLAACVINLNVELGEL  494 (597)
Q Consensus       433 ~~~~~~p~~~~~~------------~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~----~~~~~l~~~~~~~g~~~~a~~  494 (597)
                      +..  +.+...+.            .++..+.+.|++++|.+.++++. ..|+ .    ..+..+...+...|++++|+.
T Consensus       216 ~~~--~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~  293 (359)
T 3ieg_A          216 KLD--QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIR  293 (359)
T ss_dssp             HHC--TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             hhC--ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHH
Confidence            642  22233322            33667889999999999998865 3344 3    235567788999999999999


Q ss_pred             HHHHHHhcCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHhC
Q 007573          495 AAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRVRLLMKEQ  536 (597)
Q Consensus       495 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  536 (597)
                      .++++++.+|+++.++..++.+|...|++++|.+.++++.+.
T Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~  335 (359)
T 3ieg_A          294 ICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH  335 (359)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence            999999999999999999999999999999999999998764

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.86  E-value=2.4e-19  Score=176.29  Aligned_cols=310  Identities=11%  Similarity=0.043  Sum_probs=235.6

Q ss_pred             CchhHHHHHHHHHhCCChhHHHHHHHhcc---cCCcchHHHHHHHHHcCCChHHHHHHHhhcCCCCC-CchHHHHHHHHH
Q 007573          173 NVISYTAMLDGFMKKGEVDKARALSDYMS---FKNVVSWTVMITGYVKNERFCEARELFYRMPDYDK-NVFVVTAMITGF  248 (597)
Q Consensus       173 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~---~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~l~~~~  248 (597)
                      |+..+..+...+...|++++|+..|+++.   +.+..++..+..++...|++++|...++.+.+..| +...+..+...+
T Consensus         2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~   81 (359)
T 3ieg_A            2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL   81 (359)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence            45678889999999999999999999983   33567889999999999999999999999988666 566889999999


Q ss_pred             HhcCCHHHHHHHHhhcCCCCh------hHHHHH------------HHHHHHcCChhHHHHHHHHhHHCCCCCCHHHHHHH
Q 007573          249 CKVGMLENARLLFERIQPKDC------VSFNAM------------IAGYAQNGVAEEALRLFSGMIKMDMQPDDATLVSV  310 (597)
Q Consensus       249 ~~~g~~~~A~~~~~~~~~~~~------~~~~~l------------i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l  310 (597)
                      ...|++++|...|+++.+.++      ..+..+            ...+...|++++|+..++++.+             
T Consensus        82 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~-------------  148 (359)
T 3ieg_A           82 LKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILE-------------  148 (359)
T ss_dssp             HHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------------
T ss_pred             HHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH-------------
Confidence            999999999999998765333      344444            3444555555555555555444             


Q ss_pred             HHHHhccchhHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHhccC---CCChhhHHHHHHHHHHcCCHH
Q 007573          311 FTACSALQLLNEGRQSHVLVIRNGFEANVSVCNAVITMYSRCGGILDSELAFRQIH---SPNLVSWNTIIAAFAQHGHYE  387 (597)
Q Consensus       311 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~  387 (597)
                                            .. +.+..++..+...+...|++++|...++.+.   +.+...|..+...+...|+++
T Consensus       149 ----------------------~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~  205 (359)
T 3ieg_A          149 ----------------------VC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHE  205 (359)
T ss_dssp             ----------------------HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHH
T ss_pred             ----------------------hC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Confidence                                  32 3344556666667777777777777776654   455677788888888888888


Q ss_pred             HHHHHHHHHHHCCCCCC-hHHHH------------HHHHHHhccCcHHHHHHHHHHhHHhcCCCCCh--HHHHHHHHHHh
Q 007573          388 KALIFFSQMGLNGFDPD-GITFL------------SLLSACGHAGKVNESMDLFELMVKVYGIIPSS--EHYTCLVDILS  452 (597)
Q Consensus       388 ~A~~~~~~m~~~g~~p~-~~~~~------------~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~--~~~~~l~~~~~  452 (597)
                      +|...+++..+.  .|+ ...+.            .+...+.+.|++++|...++.+.+...-.+..  ..+..+...+.
T Consensus       206 ~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~  283 (359)
T 3ieg_A          206 LSLSEVRECLKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFS  283 (359)
T ss_dssp             HHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhh--CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHH
Confidence            888888888764  333 23222            23566888999999999999988752221111  33556788999


Q ss_pred             hcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhc
Q 007573          453 RAGQLEKAWQITQGMP-FEA-DTGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAA  520 (597)
Q Consensus       453 ~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~  520 (597)
                      ..|++++|.+.+++.. ..| +..+|..++..+...|++++|...++++++++|+++.+...+..++...
T Consensus       284 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~  353 (359)
T 3ieg_A          284 KDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLL  353 (359)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHH
T ss_pred             HccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Confidence            9999999999998876 344 6789999999999999999999999999999999988888887776543

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.83  E-value=3.2e-18  Score=166.09  Aligned_cols=285  Identities=10%  Similarity=-0.032  Sum_probs=188.1

Q ss_pred             CchHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHH
Q 007573          237 NVFVVTAMITGFCKVGMLENARLLFERIQP---KDCVSFNAMIAGYAQNGVAEEALRLFSGMIKMDMQPDDATLVSVFTA  313 (597)
Q Consensus       237 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~  313 (597)
                      +..++..++..+...|++++|.++|+++.+   .+...+..++..+...|++++|+.+++++.+.. +.+...+..+...
T Consensus        21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~   99 (330)
T 3hym_B           21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGCY   99 (330)
T ss_dssp             CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHH
Confidence            344444455555555555555555554322   233344444555555555555555555555432 1223344444444


Q ss_pred             Hhccc-hhHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHhccC---CCChhhHHHHHHHHHHcCCHHHH
Q 007573          314 CSALQ-LLNEGRQSHVLVIRNGFEANVSVCNAVITMYSRCGGILDSELAFRQIH---SPNLVSWNTIIAAFAQHGHYEKA  389 (597)
Q Consensus       314 ~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A  389 (597)
                      +...| +.++|...++.+.+.. +.+...+..+...+...|++++|...+++..   +.+...+..+...+...|++++|
T Consensus       100 ~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A  178 (330)
T 3hym_B          100 YLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLA  178 (330)
T ss_dssp             HHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHH
Confidence            45555 5555555555554443 3345556667777777777777777776654   34456677778888888888888


Q ss_pred             HHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCC-------CCChHHHHHHHHHHhhcCCHHHHHH
Q 007573          390 LIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMVKVYGI-------IPSSEHYTCLVDILSRAGQLEKAWQ  462 (597)
Q Consensus       390 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-------~p~~~~~~~l~~~~~~~g~~~~A~~  462 (597)
                      .+.++++.+.. +.+...+..+...+...|++++|...++.+.+...-       +.....+..++..|...|++++|.+
T Consensus       179 ~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  257 (330)
T 3hym_B          179 ERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALD  257 (330)
T ss_dssp             HHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHH
Confidence            88888887653 345677778888888888888888888887764211       3335688888888889999999998


Q ss_pred             HHhhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHH-HhcCCcH
Q 007573          463 ITQGMP--FEADTGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLY-AAAGMWR  524 (597)
Q Consensus       463 ~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~~  524 (597)
                      .+++..  .+.+...+..+...+...|++++|...++++++++|+++..+..++.++ ...|+.+
T Consensus       258 ~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~~  322 (330)
T 3hym_B          258 YHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSE  322 (330)
T ss_dssp             HHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC--
T ss_pred             HHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCchh
Confidence            888765  3345678888888899999999999999999999999888888888888 4555543

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.83  E-value=2.1e-18  Score=166.77  Aligned_cols=287  Identities=13%  Similarity=0.176  Sum_probs=122.3

Q ss_pred             HhcCChHHHHHHHhhcCCCCcchHHHHHHHHHhCCChhHHHHHHhhCCCCCcchHHHHHHHHHcCCChHHHHHHHccCC-
Q 007573           61 SRAGKISAARQLFDQMTTKDVITWNAIITGYWQNGFLQESKNLFQSMPVKNIVSWNCMIAGCIDNDRIDDAFDYFQAMP-  139 (597)
Q Consensus        61 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~-  139 (597)
                      -+.|++++|.+.++++..|+  +|..|+.++.+.|++++|++.|.+.  +|..+|..++.++...|++++|..+++... 
T Consensus        14 ~~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfika--~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark   89 (449)
T 1b89_A           14 EHIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARK   89 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHcC--CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence            36788999999999996664  8999999999999999999999765  577799999999999999999999887776 


Q ss_pred             -CCChhhHHHHHHHHHcCCChHHHHHHHccCCCCCchhHHHHHHHHHhCCChhHHHHHHHhcccCCcchHHHHHHHHHcC
Q 007573          140 -ERNTATYNAMISGFLKHGRLEEATRLFEQMPRRNVISYTAMLDGFMKKGEVDKARALSDYMSFKNVVSWTVMITGYVKN  218 (597)
Q Consensus       140 -~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ll~~~~~~  218 (597)
                       .+++.+.+.|+.+|.+.|+++++.++++.   |+..+|+.+...|...|++++|..+|..+     ..|..++.++.+.
T Consensus        90 ~~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-----~n~~~LA~~L~~L  161 (449)
T 1b89_A           90 KARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHL  161 (449)
T ss_dssp             -------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT-----TCHHHHHHHHHTT
T ss_pred             hCccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----hhHHHHHHHHHHh
Confidence             44568899999999999999999988864   77779999999999999999999999977     5888999999999


Q ss_pred             CChHHHHHHHhhcCCCCCCchHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChhHHHHHHHHhHHC
Q 007573          219 ERFCEARELFYRMPDYDKNVFVVTAMITGFCKVGMLENARLLFERIQPKDCVSFNAMIAGYAQNGVAEEALRLFSGMIKM  298 (597)
Q Consensus       219 g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  298 (597)
                      |++++|.+.+..+    .++.+|..++.+|...|+++.|......+. .++.....++..|.+.|++++|+.+++.....
T Consensus       162 g~yq~AVea~~KA----~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~l  236 (449)
T 1b89_A          162 GEYQAAVDGARKA----NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYFEELITMLEAALGL  236 (449)
T ss_dssp             TCHHHHHHHHHHH----TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS
T ss_pred             ccHHHHHHHHHHc----CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCC
Confidence            9999999999888    367888999999999999999977776655 45555556888888999999999988887754


Q ss_pred             CCCCCHHHHHHHHHHHh--ccchhHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHhccCCCChhhHHHH
Q 007573          299 DMQPDDATLVSVFTACS--ALQLLNEGRQSHVLVIRNGFEANVSVCNAVITMYSRCGGILDSELAFRQIHSPNLVSWNTI  376 (597)
Q Consensus       299 g~~p~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l  376 (597)
                      . +-....|+.+--.++  +.+++.+..+.|.                      ..=++.+.++..     .+...|..+
T Consensus       237 e-~ah~~~ftel~il~~ky~p~k~~ehl~~~~----------------------~~ini~k~~~~~-----~~~~~w~e~  288 (449)
T 1b89_A          237 E-RAHMGMFTELAILYSKFKPQKMREHLELFW----------------------SRVNIPKVLRAA-----EQAHLWAEL  288 (449)
T ss_dssp             T-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHS----------------------TTSCHHHHHHHH-----HTTTCHHHH
T ss_pred             c-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHH----------------------HHhcCcHHHHHH-----HHHHHHHHH
Confidence            3 223334443333332  2222222222211                      111111111111     245578888


Q ss_pred             HHHHHHcCCHHHHHHH
Q 007573          377 IAAFAQHGHYEKALIF  392 (597)
Q Consensus       377 i~~~~~~g~~~~A~~~  392 (597)
                      +-.|...++++.|...
T Consensus       289 ~~ly~~~~e~d~A~~t  304 (449)
T 1b89_A          289 VFLYDKYEEYDNAIIT  304 (449)
T ss_dssp             HHHHHHTTCHHHHHHH
T ss_pred             HHHHHhhchHHHHHHH
Confidence            8888888888887764

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.82  E-value=6.7e-16  Score=166.00  Aligned_cols=349  Identities=14%  Similarity=0.123  Sum_probs=274.3

Q ss_pred             ChhhHHHHHHHHHcCCChHHHHHHHccCCC-CC-----chhHHHHHHHHHhCCChhHHHHHHHhcccCCcchHHHHHHHH
Q 007573          142 NTATYNAMISGFLKHGRLEEATRLFEQMPR-RN-----VISYTAMLDGFMKKGEVDKARALSDYMSFKNVVSWTVMITGY  215 (597)
Q Consensus       142 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ll~~~  215 (597)
                      ++.--...+..|...|.+.+|+++++++.- ++     ...-+.++.+..+. +..+..++..+....+   ...+...+
T Consensus       984 ~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d---~~eIA~Ia 1059 (1630)
T 1xi4_A          984 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD---APDIANIA 1059 (1630)
T ss_pred             CHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc---HHHHHHHH
Confidence            444456678888899999999999998862 22     24456677776666 5566666666554333   45578889


Q ss_pred             HcCCChHHHHHHHhhcCCCCCCchHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChhHHHHHHHHh
Q 007573          216 VKNERFCEARELFYRMPDYDKNVFVVTAMITGFCKVGMLENARLLFERIQPKDCVSFNAMIAGYAQNGVAEEALRLFSGM  295 (597)
Q Consensus       216 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m  295 (597)
                      ...|.+++|..+|++...   .....+.+   +-..|++++|.++.+++  .++.+|..+..++.+.|++++|+..|.+.
T Consensus      1060 i~lglyEEAf~IYkKa~~---~~~A~~VL---ie~i~nldrAiE~Aerv--n~p~vWsqLAKAql~~G~~kEAIdsYiKA 1131 (1630)
T 1xi4_A         1060 ISNELFEEAFAIFRKFDV---NTSAVQVL---IEHIGNLDRAYEFAERC--NEPAVWSQLAKAQLQKGMVKEAIDSYIKA 1131 (1630)
T ss_pred             HhCCCHHHHHHHHHHcCC---HHHHHHHH---HHHHhhHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCHHHHHHHHHhc
Confidence            999999999999999742   11112222   33788999999999977  44678999999999999999999999653


Q ss_pred             HHCCCCCCHHHHHHHHHHHhccchhHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHhccCCCChhhHHH
Q 007573          296 IKMDMQPDDATLVSVFTACSALQLLNEGRQSHVLVIRNGFEANVSVCNAVITMYSRCGGILDSELAFRQIHSPNLVSWNT  375 (597)
Q Consensus       296 ~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~  375 (597)
                            -|...|..++.+|.+.|+++++.+++....+..  ++..+.+.++.+|++.+++++...+.   ..++...|..
T Consensus      1132 ------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI---~~~n~ad~~~ 1200 (1630)
T 1xi4_A         1132 ------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI---NGPNNAHIQQ 1200 (1630)
T ss_pred             ------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH---hCCCHHHHHH
Confidence                  467778889999999999999999999888765  34444446999999999998755553   4567778888


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcC
Q 007573          376 IIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAG  455 (597)
Q Consensus       376 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g  455 (597)
                      +...|...|++++|..+|...         ..|..+..++.+.|++++|.+.+++.       .+..+|..+..+|...|
T Consensus      1201 iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA-------~n~~aWkev~~acve~~ 1264 (1630)
T 1xi4_A         1201 VGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA-------NSTRTWKEVCFACVDGK 1264 (1630)
T ss_pred             HHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh-------CCHHHHHHHHHHHhhhh
Confidence            999999999999999999985         37899999999999999999998865       25688999999999999


Q ss_pred             CHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhc--CCcHHHHHHHH
Q 007573          456 QLEKAWQITQGMPFEADTGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAA--GMWRDVTRVRL  531 (597)
Q Consensus       456 ~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~--g~~~~A~~~~~  531 (597)
                      ++..|......+.  .++..+..++..|...|.+++|+.+++.++.++|.+...+.-++.+|.+-  ++..++.++|.
T Consensus      1265 Ef~LA~~cgl~Ii--v~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~ 1340 (1630)
T 1xi4_A         1265 EFRLAQMCGLHIV--VHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFW 1340 (1630)
T ss_pred             HHHHHHHHHHhhh--cCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            9999999876643  45666778899999999999999999999999988888887777777663  44555555554

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.82  E-value=1.5e-15  Score=163.33  Aligned_cols=370  Identities=12%  Similarity=0.111  Sum_probs=188.6

Q ss_pred             HHHHHHhcCChHHHHHHHhhcCC-CC-----cchHHHHHHHHHhCCChhHHHHHHhhCCCCCcchHHHHHHHHHcCCChH
Q 007573           56 KISALSRAGKISAARQLFDQMTT-KD-----VITWNAIITGYWQNGFLQESKNLFQSMPVKNIVSWNCMIAGCIDNDRID  129 (597)
Q Consensus        56 l~~~~~~~g~~~~A~~~~~~~~~-~~-----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~  129 (597)
                      .+++|+..|.+.+|+++++++.. |+     ...-+.++.+..+. +..+......+...-+   ...+...+...|.++
T Consensus       991 ~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d---~~eIA~Iai~lglyE 1066 (1630)
T 1xi4_A          991 TVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD---APDIANIAISNELFE 1066 (1630)
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc---HHHHHHHHHhCCCHH
Confidence            45555555555555555555542 11     12233333333333 2333333333332111   333455555566666


Q ss_pred             HHHHHHccCCCCChhhHHHHHHHHHcCCChHHHHHHHccCCCCCchhHHHHHHHHHhCCChhHHHHHHHhcccCCcchHH
Q 007573          130 DAFDYFQAMPERNTATYNAMISGFLKHGRLEEATRLFEQMPRRNVISYTAMLDGFMKKGEVDKARALSDYMSFKNVVSWT  209 (597)
Q Consensus       130 ~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~  209 (597)
                      +|..+|+... ......+.++.   ..|++++|.++.++.  .++.+|..+..++.+.|++++|++.|.+.  .|...|.
T Consensus      1067 EAf~IYkKa~-~~~~A~~VLie---~i~nldrAiE~Aerv--n~p~vWsqLAKAql~~G~~kEAIdsYiKA--dD~say~ 1138 (1630)
T 1xi4_A         1067 EAFAIFRKFD-VNTSAVQVLIE---HIGNLDRAYEFAERC--NEPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYM 1138 (1630)
T ss_pred             HHHHHHHHcC-CHHHHHHHHHH---HHhhHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCHHHHHHHHHhc--CChHHHH
Confidence            6666666553 11111222222   445566666666554  23455666666666666666666666543  4455555


Q ss_pred             HHHHHHHcCCChHHHHHHHhhcCCCCCCchHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChhHHH
Q 007573          210 VMITGYVKNERFCEARELFYRMPDYDKNVFVVTAMITGFCKVGMLENARLLFERIQPKDCVSFNAMIAGYAQNGVAEEAL  289 (597)
Q Consensus       210 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~  289 (597)
                      .++.++.+.|++++|.+.|..+.+..++..+.+.++.+|++.+++++.....   ..++...|..+...|...|++++|.
T Consensus      1139 eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~fI---~~~n~ad~~~iGd~le~eg~YeeA~ 1215 (1630)
T 1xi4_A         1139 EVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFI---NGPNNAHIQQVGDRCYDEKMYDAAK 1215 (1630)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHHH---hCCCHHHHHHHHHHHHhcCCHHHHH
Confidence            5666666666666666666665554444444445666666666665433332   2334445555666666666666666


Q ss_pred             HHHHHhHHCCCCCCHHHHHHHHHHHhccchhHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHhccCCCC
Q 007573          290 RLFSGMIKMDMQPDDATLVSVFTACSALQLLNEGRQSHVLVIRNGFEANVSVCNAVITMYSRCGGILDSELAFRQIHSPN  369 (597)
Q Consensus       290 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  369 (597)
                      .+|...         ..|..+...+.+.|+++.|.+.+...      .+..+|..+..++...|++..|...... ...+
T Consensus      1216 ~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~-Iiv~ 1279 (1630)
T 1xi4_A         1216 LLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-IVVH 1279 (1630)
T ss_pred             HHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHh-hhcC
Confidence            666553         24555666666666666666655544      2345555555556666666666655543 2234


Q ss_pred             hhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHh--ccCcHHHHHHHHHHhHHhcCCCC------C
Q 007573          370 LVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPD-GITFLSLLSACG--HAGKVNESMDLFELMVKVYGIIP------S  440 (597)
Q Consensus       370 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~--~~g~~~~a~~~~~~~~~~~~~~p------~  440 (597)
                      +..+..++..|.+.|.+++|+.+++.....  .|. ...|+-+...++  +.++..++.+.|..-   -+++|      +
T Consensus      1280 ~deLeeli~yYe~~G~feEAI~LlE~aL~L--eraH~gmftELaiLyaKy~peklmEhlk~f~~r---ini~k~~r~~e~ 1354 (1630)
T 1xi4_A         1280 ADELEELINYYQDRGYFEELITMLEAALGL--ERAHMGMFTELAILYSKFKPQKMREHLELFWSR---VNIPKVLRAAEQ 1354 (1630)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHhcc--ChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHh---cccchHhHHHHH
Confidence            444555666666666666666666555432  222 223333333332  233444444444321   13333      3


Q ss_pred             hHHHHHHHHHHhhcCCHHHHH
Q 007573          441 SEHYTCLVDILSRAGQLEKAW  461 (597)
Q Consensus       441 ~~~~~~l~~~~~~~g~~~~A~  461 (597)
                      ...|..++..|.+.|+++.|.
T Consensus      1355 ~~lW~elv~LY~~~~e~dnA~ 1375 (1630)
T 1xi4_A         1355 AHLWAELVFLYDKYEEYDNAI 1375 (1630)
T ss_pred             HHHHHHHHHHHHhcccHHHHH
Confidence            445666666666666666665

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.82  E-value=7.6e-18  Score=163.47  Aligned_cols=264  Identities=11%  Similarity=-0.005  Sum_probs=229.1

Q ss_pred             CChhHHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhccchhHHHHHHHHHHHHhCCCCcccHHHHHH
Q 007573          267 KDCVSFNAMIAGYAQNGVAEEALRLFSGMIKMDMQPDDATLVSVFTACSALQLLNEGRQSHVLVIRNGFEANVSVCNAVI  346 (597)
Q Consensus       267 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  346 (597)
                      .++..+..++..+...|++++|+.+|+++.+.. +.+...+..+...+...|+.++|...+..+.+.. +.+...+..+.
T Consensus        20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~   97 (330)
T 3hym_B           20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG   97 (330)
T ss_dssp             CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence            466778888999999999999999999998764 3344455567778889999999999999999875 56788899999


Q ss_pred             HHHHhcC-CHHHHHHHHhccC---CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHH
Q 007573          347 TMYSRCG-GILDSELAFRQIH---SPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVN  422 (597)
Q Consensus       347 ~~~~~~g-~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~  422 (597)
                      ..+...| ++++|...|++..   +.+...|..+...+...|++++|++.++++.+.. +.+...+..+...+...|+++
T Consensus        98 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~  176 (330)
T 3hym_B           98 CYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSK  176 (330)
T ss_dssp             HHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHH
Confidence            9999999 9999999999875   4567789999999999999999999999998764 334667777889999999999


Q ss_pred             HHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC-C----------CCCHHHHHHHHHHHHhcCCHHH
Q 007573          423 ESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMP-F----------EADTGVWGSLLAACVINLNVEL  491 (597)
Q Consensus       423 ~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~----------~p~~~~~~~l~~~~~~~g~~~~  491 (597)
                      +|.+.++.+.+.  .+.+...+..++..|...|++++|...++++. .          +....++..++..+...|++++
T Consensus       177 ~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  254 (330)
T 3hym_B          177 LAERFFSQALSI--APEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE  254 (330)
T ss_dssp             HHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHh--CCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHH
Confidence            999999999853  23457889999999999999999999998764 1          3346789999999999999999


Q ss_pred             HHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHh
Q 007573          492 GELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRVRLLMKE  535 (597)
Q Consensus       492 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  535 (597)
                      |+..++++++.+|+++.++..++.+|...|++++|.+.++++.+
T Consensus       255 A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  298 (330)
T 3hym_B          255 ALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALG  298 (330)
T ss_dssp             HHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTT
T ss_pred             HHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHc
Confidence            99999999999999999999999999999999999999998654

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.81  E-value=1.9e-18  Score=170.66  Aligned_cols=299  Identities=11%  Similarity=-0.002  Sum_probs=199.6

Q ss_pred             HHcCCChHHHHH-HHhhcCCCCCC-----chHHHHHHHHHHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCCh
Q 007573          215 YVKNERFCEARE-LFYRMPDYDKN-----VFVVTAMITGFCKVGMLENARLLFERIQ---PKDCVSFNAMIAGYAQNGVA  285 (597)
Q Consensus       215 ~~~~g~~~~a~~-~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~  285 (597)
                      +...|++++|.. .++....+.|+     ...+..+...+.+.|++++|...|+++.   +.+..+|..+...+...|++
T Consensus        35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~  114 (368)
T 1fch_A           35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQE  114 (368)
T ss_dssp             -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCH
T ss_pred             hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCH
Confidence            334566777776 77766654442     3345666667777777777777776653   23555666777777777777


Q ss_pred             hHHHHHHHHhHHCCCCCCHHHHHHHHHHHhccchhHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHhcc
Q 007573          286 EEALRLFSGMIKMDMQPDDATLVSVFTACSALQLLNEGRQSHVLVIRNGFEANVSVCNAVITMYSRCGGILDSELAFRQI  365 (597)
Q Consensus       286 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  365 (597)
                      ++|+..|+++.+.. +.+..++..+...+...|+.++|...+..+.+.... +...+..+...       ..       .
T Consensus       115 ~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~-------~~-------~  178 (368)
T 1fch_A          115 LLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEG-------AG-------G  178 (368)
T ss_dssp             HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC----------------------
T ss_pred             HHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHH-------hh-------h
Confidence            77777777666543 224445555555556666666666666665554311 11111100000       00       0


Q ss_pred             CCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHH
Q 007573          366 HSPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDP-DGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHY  444 (597)
Q Consensus       366 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~  444 (597)
                      ..+ ...+.. +..+...|++++|+..++++.+..... +..++..+...+...|++++|...++++.+.  .+.+...+
T Consensus       179 ~~~-~~~~~~-~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~  254 (368)
T 1fch_A          179 AGL-GPSKRI-LGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLW  254 (368)
T ss_dssp             --------CT-THHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHH
T ss_pred             hcc-cHHHHH-HHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHH
Confidence            000 001112 223337899999999999998753221 4788889999999999999999999998864  23357889


Q ss_pred             HHHHHHHhhcCCHHHHHHHHhhCC-C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-----------CchHH
Q 007573          445 TCLVDILSRAGQLEKAWQITQGMP-F-EADTGVWGSLLAACVINLNVELGELAAKKMRELDPQN-----------SAVYV  511 (597)
Q Consensus       445 ~~l~~~~~~~g~~~~A~~~~~~~~-~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~-----------~~~~~  511 (597)
                      ..++..|.+.|++++|.+.++++. . +.+...+..++..+...|++++|...+++++++.|++           ..++.
T Consensus       255 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~  334 (368)
T 1fch_A          255 NKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWS  334 (368)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHH
Confidence            999999999999999999999875 3 4457789999999999999999999999999998887           78899


Q ss_pred             HHHHHHHhcCCcHHHHHHHHHH
Q 007573          512 MLSNLYAAAGMWRDVTRVRLLM  533 (597)
Q Consensus       512 ~l~~~~~~~g~~~~A~~~~~~~  533 (597)
                      .++.+|...|++++|..++++.
T Consensus       335 ~l~~~~~~~g~~~~A~~~~~~~  356 (368)
T 1fch_A          335 TLRLALSMLGQSDAYGAADARD  356 (368)
T ss_dssp             HHHHHHHHHTCGGGHHHHHTTC
T ss_pred             HHHHHHHHhCChHhHHHhHHHH
Confidence            9999999999999999988744

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.81  E-value=1.2e-18  Score=168.48  Aligned_cols=286  Identities=12%  Similarity=0.098  Sum_probs=126.6

Q ss_pred             cCCChHHHHHHHccCCCCCchhHHHHHHHHHhCCChhHHHHHHHhcccCCcchHHHHHHHHHcCCChHHHHHHHhhcCCC
Q 007573          155 KHGRLEEATRLFEQMPRRNVISYTAMLDGFMKKGEVDKARALSDYMSFKNVVSWTVMITGYVKNERFCEARELFYRMPDY  234 (597)
Q Consensus       155 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~  234 (597)
                      +.|++++|.+.++++..|  .+|..|+.++.+.|++++|++.|.+.  +|..+|..++.++...|++++|++.++.+.+.
T Consensus        15 ~~~~ld~A~~fae~~~~~--~vWs~La~A~l~~g~~~eAIdsfika--~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~   90 (449)
T 1b89_A           15 HIGNLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKK   90 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HccCHHHHHHHHHhCCCh--HHHHHHHHHHHHcCCHHHHHHHHHcC--CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence            567788888888887444  47888888888888888888888654  56668888888888888888888888777775


Q ss_pred             CCCchHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHH
Q 007573          235 DKNVFVVTAMITGFCKVGMLENARLLFERIQPKDCVSFNAMIAGYAQNGVAEEALRLFSGMIKMDMQPDDATLVSVFTAC  314 (597)
Q Consensus       235 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~  314 (597)
                      .+++.+.+.++.+|.+.|+++++.++++.   ++..+|+.++..|...|++++|...|..+         ..|..+..++
T Consensus        91 ~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L  158 (449)
T 1b89_A           91 ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTL  158 (449)
T ss_dssp             ------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT---------TCHHHHHHHH
T ss_pred             CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHHHHH
Confidence            56677788888888888888887777753   56668888888888888888888888866         3577788888


Q ss_pred             hccchhHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHhccCCCChhhHHHHHHHHHHcCCHHHHHHHHH
Q 007573          315 SALQLLNEGRQSHVLVIRNGFEANVSVCNAVITMYSRCGGILDSELAFRQIHSPNLVSWNTIIAAFAQHGHYEKALIFFS  394 (597)
Q Consensus       315 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~  394 (597)
                      .+.|++++|.+.+..+      .++.+|..++.+|...|+++.|......+. .++.....++..|.+.|++++|+.+++
T Consensus       159 ~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~eEai~lLe  231 (449)
T 1b89_A          159 VHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYFEELITMLE  231 (449)
T ss_dssp             HTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCHHHHHHHHH
Confidence            8888888888887776      367788888888888888888877776654 444445568888899999999999998


Q ss_pred             HHHHCCCCCChHHHHHHHHHHhc--cCcHHHHHHHHHHhHHhcCCCC------ChHHHHHHHHHHhhcCCHHHHHHHHhh
Q 007573          395 QMGLNGFDPDGITFLSLLSACGH--AGKVNESMDLFELMVKVYGIIP------SSEHYTCLVDILSRAGQLEKAWQITQG  466 (597)
Q Consensus       395 ~m~~~g~~p~~~~~~~ll~~~~~--~g~~~~a~~~~~~~~~~~~~~p------~~~~~~~l~~~~~~~g~~~~A~~~~~~  466 (597)
                      ...... +-....|+.+.-++++  .+++.+..+.|.   +.-+++|      +...|..++..|...++++.|...+-+
T Consensus       232 ~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~---~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~  307 (449)
T 1b89_A          232 AALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFW---SRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMN  307 (449)
T ss_dssp             HHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHS---TTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHH---HHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHh
Confidence            887443 3334556666555543  445555555544   2225555      466788899999999999988876655


Q ss_pred             C
Q 007573          467 M  467 (597)
Q Consensus       467 ~  467 (597)
                      -
T Consensus       308 h  308 (449)
T 1b89_A          308 H  308 (449)
T ss_dssp             S
T ss_pred             C
Confidence            4

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.81  E-value=3.2e-17  Score=155.37  Aligned_cols=268  Identities=8%  Similarity=-0.016  Sum_probs=161.4

Q ss_pred             cCCChHHHHHHHhhcCCCCCCc--hHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChhHHHHHHHH
Q 007573          217 KNERFCEARELFYRMPDYDKNV--FVVTAMITGFCKVGMLENARLLFERIQPKDCVSFNAMIAGYAQNGVAEEALRLFSG  294 (597)
Q Consensus       217 ~~g~~~~a~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~  294 (597)
                      ..|++..|+...+......|+.  .....+..+|...|+++.|+..++...+++..++..+...+...++.++|++.+++
T Consensus        11 ~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~~~~~~~a~~~la~~~~~~~~~~~A~~~l~~   90 (291)
T 3mkr_A           11 YIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLASHSRRDAIVAELDR   90 (291)
T ss_dssp             HTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTTSCHHHHHHHHHHHHHHCSTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcccCChhHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence            3455555555554444433332  12233444555555555555444443333334444444444445555555555554


Q ss_pred             hHHCCCCCCHHHHHHHHHHHhccchhHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHhccCCCChhhHH
Q 007573          295 MIKMDMQPDDATLVSVFTACSALQLLNEGRQSHVLVIRNGFEANVSVCNAVITMYSRCGGILDSELAFRQIHSPNLVSWN  374 (597)
Q Consensus       295 m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~  374 (597)
                      +...+..|+                                  +...+..+...+...|++++|++.+++  +.+...+.
T Consensus        91 ll~~~~~P~----------------------------------~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~  134 (291)
T 3mkr_A           91 EMSRSVDVT----------------------------------NTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMA  134 (291)
T ss_dssp             HHHSCCCCS----------------------------------CHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHH
T ss_pred             HHhcccCCC----------------------------------CHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHH
Confidence            444333333                                  334455566778888899999988888  56778888


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHH---HHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHH
Q 007573          375 TIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITF---LSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDIL  451 (597)
Q Consensus       375 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~---~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~  451 (597)
                      .++..+.+.|++++|.+.|+++.+.  .|+....   ...+..+...|++++|..+|+++.+.  .+.++..++.+..++
T Consensus       135 ~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~  210 (291)
T 3mkr_A          135 MTVQILLKLDRLDLARKELKKMQDQ--DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACH  210 (291)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHH
Confidence            8888999999999999999998875  3554321   12233444557888888888888764  334566777777777


Q ss_pred             hhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHH-HHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcHHHHH
Q 007573          452 SRAGQLEKAWQITQGMP-FEA-DTGVWGSLLAACVINLNVEL-GELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTR  528 (597)
Q Consensus       452 ~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~  528 (597)
                      .+.|++++|++.+++.. ..| +..++..++..+...|+.++ +.++++++++++|+++.+.    +...+.+.++++..
T Consensus       211 ~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~----d~~~~~~~fd~~~~  286 (291)
T 3mkr_A          211 MAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIK----EYRAKENDFDRLVL  286 (291)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH----HHHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHH----HHHHHHHHHHHHHH
Confidence            77777777777776654 333 45567777777767776654 4567777777777765533    23444444444443

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.80  E-value=1.5e-16  Score=163.31  Aligned_cols=365  Identities=10%  Similarity=0.003  Sum_probs=257.1

Q ss_pred             CChhhHHHHHHHHHc----CCChHHHHHHHccCCC-CCchhHHHHHHHHHh----CCChhHHHHHHHhcccC-CcchHHH
Q 007573          141 RNTATYNAMISGFLK----HGRLEEATRLFEQMPR-RNVISYTAMLDGFMK----KGEVDKARALSDYMSFK-NVVSWTV  210 (597)
Q Consensus       141 ~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~-~~~~~~~  210 (597)
                      .++..+..|...|..    .+++++|...|++..+ .++..+..|...|..    .+++++|...|++.... +...+..
T Consensus        37 g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~  116 (490)
T 2xm6_A           37 GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGLPQAQQN  116 (490)
T ss_dssp             TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence            345555555555555    5666666666655432 345556666666666    66666666666666433 4455555


Q ss_pred             HHHHHHc----CCChHHHHHHHhhcCCCCCCchHHHHHHHHHHh----cCCHHHHHHHHhhcCC-CChhHHHHHHHHHHH
Q 007573          211 MITGYVK----NERFCEARELFYRMPDYDKNVFVVTAMITGFCK----VGMLENARLLFERIQP-KDCVSFNAMIAGYAQ  281 (597)
Q Consensus       211 ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~  281 (597)
                      +...|..    .+++++|...|+.+.+. .+...+..|...|..    .++.++|.+.|++..+ .++.++..+...|..
T Consensus       117 Lg~~y~~g~g~~~~~~~A~~~~~~a~~~-~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~  195 (490)
T 2xm6_A          117 LGVMYHEGNGVKVDKAESVKWFRLAAEQ-GRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGYMYSR  195 (490)
T ss_dssp             HHHHHHHTSSSCCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCCCCCCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence            6666665    56677777777666552 234556666666665    6677777777766543 456677777777776


Q ss_pred             ----cCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhc----cchhHHHHHHHHHHHHhCCCCcccHHHHHHHHHHh--
Q 007573          282 ----NGVAEEALRLFSGMIKMDMQPDDATLVSVFTACSA----LQLLNEGRQSHVLVIRNGFEANVSVCNAVITMYSR--  351 (597)
Q Consensus       282 ----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--  351 (597)
                          .+++++|+..|++..+.|   +...+..+...+..    .++.++|...+....+.+   +...+..+..+|..  
T Consensus       196 g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~  269 (490)
T 2xm6_A          196 GLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGL  269 (490)
T ss_dssp             TSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTT
T ss_pred             CCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCC
Confidence                677788888887777654   33444445444443    667777877777777654   34556667777777  


Q ss_pred             --cCCHHHHHHHHhccC-CCChhhHHHHHHHHHHc-----CCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccC---c
Q 007573          352 --CGGILDSELAFRQIH-SPNLVSWNTIIAAFAQH-----GHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAG---K  420 (597)
Q Consensus       352 --~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g---~  420 (597)
                        .++.++|...|++.. ..+...+..+...|...     +++++|+.+|++..+.|   +...+..+...+...|   +
T Consensus       270 ~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~  346 (490)
T 2xm6_A          270 AGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEE  346 (490)
T ss_dssp             TSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHH
T ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCccc
Confidence              788999999888776 34566777888888877     89999999999998865   3456666777776656   7


Q ss_pred             HHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhh----cCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHh----cCCHHHH
Q 007573          421 VNESMDLFELMVKVYGIIPSSEHYTCLVDILSR----AGQLEKAWQITQGMPFEADTGVWGSLLAACVI----NLNVELG  492 (597)
Q Consensus       421 ~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a  492 (597)
                      .++|.+.|++..+.    .++..+..|..+|..    .+++++|.+.+++.....+...+..|...|..    .++.++|
T Consensus       347 ~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A  422 (490)
T 2xm6_A          347 HKKAVEWFRKAAAK----GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLGVERDYVQA  422 (490)
T ss_dssp             HHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred             HHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCCCCHHHH
Confidence            89999999998764    367788889999988    89999999999887644567888889999887    8999999


Q ss_pred             HHHHHHHHhcCCC---CCchHHHHHHHHHh
Q 007573          493 ELAAKKMRELDPQ---NSAVYVMLSNLYAA  519 (597)
Q Consensus       493 ~~~~~~~~~~~p~---~~~~~~~l~~~~~~  519 (597)
                      ...|+++.+.+|+   ++.....++.++..
T Consensus       423 ~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~  452 (490)
T 2xm6_A          423 WAWFDTASTNDMNLFGTENRNITEKKLTAK  452 (490)
T ss_dssp             HHHHHHHHHHHCCHHHHHHHHHHHTTSCHH
T ss_pred             HHHHHHHHHCCCCCcCCHHHHHHHHhcCHh
Confidence            9999999999854   66666777666554

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.80  E-value=2.4e-16  Score=163.64  Aligned_cols=401  Identities=9%  Similarity=0.062  Sum_probs=268.3

Q ss_pred             CcchHHHHHHHHHcCCChHHHHHHHccCC---CCChhhHHHHHHHHHcCCChHHHHHHHccCCC--CCchhHHHHHHHH-
Q 007573          111 NIVSWNCMIAGCIDNDRIDDAFDYFQAMP---ERNTATYNAMISGFLKHGRLEEATRLFEQMPR--RNVISYTAMLDGF-  184 (597)
Q Consensus       111 ~~~~~~~ll~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~-  184 (597)
                      |...|..++.. .+.|++++|..+++++.   +.+...|..++..+.+.|++++|..+|++...  |++..|...+... 
T Consensus        12 ~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~lw~~~~~~~~   90 (530)
T 2ooe_A           12 DLDAWSILIRE-AQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLSYVR   90 (530)
T ss_dssp             CHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence            66677777774 67788888888888876   44566788888888888888888888887764  5666666666433 


Q ss_pred             HhCCChhHHHH----HHHhcc------cCCcchHHHHHHHHHc---------CCChHHHHHHHhhcCCCCCCc---hHHH
Q 007573          185 MKKGEVDKARA----LSDYMS------FKNVVSWTVMITGYVK---------NERFCEARELFYRMPDYDKNV---FVVT  242 (597)
Q Consensus       185 ~~~g~~~~A~~----~~~~m~------~~~~~~~~~ll~~~~~---------~g~~~~a~~~~~~~~~~~~~~---~~~~  242 (597)
                      ...|+.+.|.+    +|++..      .++...|...+.....         .|+++.|..+|+++.+. |..   ..|.
T Consensus        91 ~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~-P~~~~~~~~~  169 (530)
T 2ooe_A           91 ETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVN-PMINIEQLWR  169 (530)
T ss_dssp             HHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTS-CCTTHHHHHH
T ss_pred             HHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhc-hhhhHHHHHH
Confidence            34577766655    555441      1234555555554443         56677777777777663 322   1222


Q ss_pred             HHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChhHHHHHHHHh------HHCC---CCCCH--------H
Q 007573          243 AMITGFCKVGMLENARLLFERIQPKDCVSFNAMIAGYAQNGVAEEALRLFSGM------IKMD---MQPDD--------A  305 (597)
Q Consensus       243 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m------~~~g---~~p~~--------~  305 (597)
                      .........|. ..+..++.                 ...+++..|..++..+      .+..   +.|+.        .
T Consensus       170 ~~~~~e~~~~~-~~~~~~l~-----------------~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~  231 (530)
T 2ooe_A          170 DYNKYEEGINI-HLAKKMIE-----------------DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVD  231 (530)
T ss_dssp             HHHHHHHHHCH-HHHHHHHH-----------------TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHH
T ss_pred             HHHHHHHhhch-hHHHHHHH-----------------HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHH
Confidence            21111100110 00111110                 1233455666555542      1111   23331        2


Q ss_pred             HHHHHHHHHhc----cchh----HHHHHHHHHHHHhCCCCcccHHHHHHHHHHh-------cCCHH-------HHHHHHh
Q 007573          306 TLVSVFTACSA----LQLL----NEGRQSHVLVIRNGFEANVSVCNAVITMYSR-------CGGIL-------DSELAFR  363 (597)
Q Consensus       306 ~~~~ll~~~~~----~~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~~-------~A~~~~~  363 (597)
                      .|...+.....    .++.    +.+..+++.++... +.+..+|..++..+.+       .|+++       +|..+++
T Consensus       232 ~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~  310 (530)
T 2ooe_A          232 MWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYE  310 (530)
T ss_dssp             HHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHH
Confidence            33333322111    1222    35667788777764 5567788888888775       68877       8999998


Q ss_pred             ccC----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCh--HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCC
Q 007573          364 QIH----SPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDG--ITFLSLLSACGHAGKVNESMDLFELMVKVYGI  437 (597)
Q Consensus       364 ~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~  437 (597)
                      +..    +.+...|..++..+.+.|++++|..+|+++.+.  .|+.  ..|..++..+.+.|++++|.++|+...+.   
T Consensus       311 ~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~---  385 (530)
T 2ooe_A          311 RAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED---  385 (530)
T ss_dssp             HHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---
T ss_pred             HHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc---
Confidence            775    335778999999999999999999999999985  5543  47888888888899999999999998753   


Q ss_pred             CCC-hHHHHHHHHH-HhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc----h
Q 007573          438 IPS-SEHYTCLVDI-LSRAGQLEKAWQITQGMP-FEA-DTGVWGSLLAACVINLNVELGELAAKKMRELDPQNSA----V  509 (597)
Q Consensus       438 ~p~-~~~~~~l~~~-~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~----~  509 (597)
                      .|. ...|...+.. +...|+.++|.++|++.. ..| +...|..++..+...|+.++|..+|+++++..|.++.    .
T Consensus       386 ~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~l  465 (530)
T 2ooe_A          386 ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEI  465 (530)
T ss_dssp             TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHH
T ss_pred             cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHH
Confidence            333 3444333333 346899999999998765 334 5789999999999999999999999999998876654    6


Q ss_pred             HHHHHHHHHhcCCcHHHHHHHHHHHhCC
Q 007573          510 YVMLSNLYAAAGMWRDVTRVRLLMKEQG  537 (597)
Q Consensus       510 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~  537 (597)
                      +...+......|+.+.+.++.+++.+.-
T Consensus       466 w~~~~~~e~~~G~~~~~~~~~~r~~~~~  493 (530)
T 2ooe_A          466 WARFLAFESNIGDLASILKVEKRRFTAF  493 (530)
T ss_dssp             HHHHHHHHHHSSCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence            7777888889999999999999987644

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.78  E-value=6e-17  Score=165.79  Aligned_cols=380  Identities=11%  Similarity=-0.039  Sum_probs=180.9

Q ss_pred             hhhHHHHHHHHHcCCChHHHHHHHccCCC------------CCchhHHHHHHHHHhCCChhHHHHHHHhccc--------
Q 007573          143 TATYNAMISGFLKHGRLEEATRLFEQMPR------------RNVISYTAMLDGFMKKGEVDKARALSDYMSF--------  202 (597)
Q Consensus       143 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--------  202 (597)
                      ...|+.|..++...|++++|++.|++..+            ....+|+.+..+|...|++++|...+++...        
T Consensus        51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~  130 (472)
T 4g1t_A           51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP  130 (472)
T ss_dssp             CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence            34566666666666776666666654321            1233555666666666666666655554410        


Q ss_pred             --C-CcchHHHHHHHHHc--CCChHHHHHHHhhcCCCCCCch-HHHHHHHH---HHhcCCHHHHHHHHhhc---CCCChh
Q 007573          203 --K-NVVSWTVMITGYVK--NERFCEARELFYRMPDYDKNVF-VVTAMITG---FCKVGMLENARLLFERI---QPKDCV  270 (597)
Q Consensus       203 --~-~~~~~~~ll~~~~~--~g~~~~a~~~~~~~~~~~~~~~-~~~~l~~~---~~~~g~~~~A~~~~~~~---~~~~~~  270 (597)
                        + ...++.....++..  .+++++|+..|+++.++.|+.. .+..+..+   +...++.++|+..+++.   .+.+..
T Consensus       131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~  210 (472)
T 4g1t_A          131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQY  210 (472)
T ss_dssp             SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHH
T ss_pred             cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchH
Confidence              0 11233333333322  2345555555555554444322 22222222   22233444444444332   122333


Q ss_pred             HHHHHHHHHHH----cCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhccchhHHHHHHHHHHHHhCCCCcccHHHHHH
Q 007573          271 SFNAMIAGYAQ----NGVAEEALRLFSGMIKMDMQPDDATLVSVFTACSALQLLNEGRQSHVLVIRNGFEANVSVCNAVI  346 (597)
Q Consensus       271 ~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  346 (597)
                      ++..+...+..    .|++++|...+++..... +.+...+..+...+...|+.+.|...+..+.+.. +.+..++..+.
T Consensus       211 ~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg  288 (472)
T 4g1t_A          211 LKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQIG  288 (472)
T ss_dssp             HHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHHHH
Confidence            33333333322    233444444444444321 1223333344444444444444444444444432 22233333333


Q ss_pred             HHHHhcCCHHHHHHHHhccCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHH
Q 007573          347 TMYSRCGGILDSELAFRQIHSPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMD  426 (597)
Q Consensus       347 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~  426 (597)
                      ..|...+....+.     ..       ..........+.+++|...+++..+.. +.+..++..+...+...|++++|.+
T Consensus       289 ~~y~~~~~~~~~~-----~~-------~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~  355 (472)
T 4g1t_A          289 CCYRAKVFQVMNL-----RE-------NGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEY  355 (472)
T ss_dssp             HHHHHHHHHHHHC------------------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHhhhH-----HH-------HHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHH
Confidence            3332111000000     00       000000011234577888888877643 3345567778888999999999999


Q ss_pred             HHHHhHHhcCCCCCh--HHHHHHHHH-HhhcCCHHHHHHHHhhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 007573          427 LFELMVKVYGIIPSS--EHYTCLVDI-LSRAGQLEKAWQITQGMP-FEADTGVWGSLLAACVINLNVELGELAAKKMREL  502 (597)
Q Consensus       427 ~~~~~~~~~~~~p~~--~~~~~l~~~-~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  502 (597)
                      .|++..+. ...|..  ..+..+... +...|+.++|+..+++.. +.|+......         ....+..++++.++.
T Consensus       356 ~~~kaL~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~---------~~~~l~~~~~~~l~~  425 (472)
T 4g1t_A          356 YFQKEFSK-ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEK---------MKDKLQKIAKMRLSK  425 (472)
T ss_dssp             HHHHHHHS-CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHH---------HHHHHHHHHHHHHHH
T ss_pred             HHHHHHhc-CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHH---------HHHHHHHHHHHHHHh
Confidence            99988764 222221  123333332 346789999999988765 6666543322         234566778888999


Q ss_pred             CCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHhCCCccCCCeeEE
Q 007573          503 DPQNSAVYVMLSNLYAAAGMWRDVTRVRLLMKEQGVTKQCAYSWI  547 (597)
Q Consensus       503 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~s~~  547 (597)
                      +|+++.++..++.+|...|++++|++.|++..+.+.......+|+
T Consensus       426 ~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~  470 (472)
T 4g1t_A          426 NGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWN  470 (472)
T ss_dssp             CC-CTTHHHHHHHHHHHHHHCC-----------------------
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcC
Confidence            999999999999999999999999999999998775544455554

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.78  E-value=1.2e-15  Score=156.74  Aligned_cols=352  Identities=11%  Similarity=-0.008  Sum_probs=296.2

Q ss_pred             CCCchhHHHHHHHHHh----CCChhHHHHHHHhcccC-CcchHHHHHHHHHc----CCChHHHHHHHhhcCCCCCCchHH
Q 007573          171 RRNVISYTAMLDGFMK----KGEVDKARALSDYMSFK-NVVSWTVMITGYVK----NERFCEARELFYRMPDYDKNVFVV  241 (597)
Q Consensus       171 ~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~-~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~  241 (597)
                      ..++.++..+...|..    .+++++|+..|++.... +...+..+...|..    .+++++|.+.|+.+.+. .+...+
T Consensus        36 ~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~-~~~~a~  114 (490)
T 2xm6_A           36 SGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK-GLPQAQ  114 (490)
T ss_dssp             TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-TCHHHH
T ss_pred             CCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-CCHHHH
Confidence            4577888888888888    89999999999988544 66788889999988    99999999999998763 356677


Q ss_pred             HHHHHHHHh----cCCHHHHHHHHhhcCC-CChhHHHHHHHHHHH----cCChhHHHHHHHHhHHCCCCCCHHHHHHHHH
Q 007573          242 TAMITGFCK----VGMLENARLLFERIQP-KDCVSFNAMIAGYAQ----NGVAEEALRLFSGMIKMDMQPDDATLVSVFT  312 (597)
Q Consensus       242 ~~l~~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~  312 (597)
                      ..|...|..    .+++++|...|++..+ .++.++..+...|..    .+++++|+..|++..+.|   +...+..+..
T Consensus       115 ~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~  191 (490)
T 2xm6_A          115 QNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGY  191 (490)
T ss_dssp             HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred             HHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHH
Confidence            888888988    8899999999998654 467788899999988    789999999999998865   5566666666


Q ss_pred             HHhc----cchhHHHHHHHHHHHHhCCCCcccHHHHHHHHHHh----cCCHHHHHHHHhccC-CCChhhHHHHHHHHHH-
Q 007573          313 ACSA----LQLLNEGRQSHVLVIRNGFEANVSVCNAVITMYSR----CGGILDSELAFRQIH-SPNLVSWNTIIAAFAQ-  382 (597)
Q Consensus       313 ~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~-  382 (597)
                      .+..    .++.++|...+....+.+   +...+..+..+|..    .++.++|...|++.. ..+...+..+...|.. 
T Consensus       192 ~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g  268 (490)
T 2xm6_A          192 MYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYILEQG  268 (490)
T ss_dssp             HHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred             HHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCC
Confidence            6665    789999999999998876   45677888888886    789999999999876 4566778888888887 


Q ss_pred             ---cCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhcc-----CcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhc
Q 007573          383 ---HGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHA-----GKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRA  454 (597)
Q Consensus       383 ---~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~-----g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~  454 (597)
                         .+++++|+++|++..+.|   +...+..+...+...     +++++|...|++..+. +   +...+..+...|...
T Consensus       269 ~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~y~~~  341 (490)
T 2xm6_A          269 LAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ-G---DATAQANLGAIYFRL  341 (490)
T ss_dssp             TTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHS
T ss_pred             CCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc-C---CHHHHHHHHHHHHhC
Confidence               899999999999998765   455666777777766     8999999999998874 3   456778888888876


Q ss_pred             C---CHHHHHHHHhhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHh----cCCc
Q 007573          455 G---QLEKAWQITQGMPFEADTGVWGSLLAACVI----NLNVELGELAAKKMRELDPQNSAVYVMLSNLYAA----AGMW  523 (597)
Q Consensus       455 g---~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~  523 (597)
                      |   +.++|.+.+++.....+...+..|...|..    .+++++|+..++++.+.+  ++.++..|+.+|..    .+++
T Consensus       342 g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g~~~d~  419 (490)
T 2xm6_A          342 GSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGLGVERDY  419 (490)
T ss_dssp             CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCH
T ss_pred             CCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCCCCCCH
Confidence            6   789999999887644678899999999988    899999999999999865  57889999999999    8999


Q ss_pred             HHHHHHHHHHHhCCC
Q 007573          524 RDVTRVRLLMKEQGV  538 (597)
Q Consensus       524 ~~A~~~~~~~~~~~~  538 (597)
                      ++|.+.|++..+.+.
T Consensus       420 ~~A~~~~~~A~~~~~  434 (490)
T 2xm6_A          420 VQAWAWFDTASTNDM  434 (490)
T ss_dssp             HHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHCCC
Confidence            999999999998774

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.78  E-value=2.8e-17  Score=162.20  Aligned_cols=281  Identities=12%  Similarity=0.031  Sum_probs=162.9

Q ss_pred             HhCCChhHHHH-HHHhccc--C-----CcchHHHHHHHHHcCCChHHHHHHHhhcCCCCC-CchHHHHHHHHHHhcCCHH
Q 007573          185 MKKGEVDKARA-LSDYMSF--K-----NVVSWTVMITGYVKNERFCEARELFYRMPDYDK-NVFVVTAMITGFCKVGMLE  255 (597)
Q Consensus       185 ~~~g~~~~A~~-~~~~m~~--~-----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~  255 (597)
                      ...|++++|+. .+++...  |     +...+..+...+...|++++|...++.+.+..| +..++..+...+.+.|+++
T Consensus        36 ~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~  115 (368)
T 1fch_A           36 PWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQEL  115 (368)
T ss_dssp             ----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHH
Confidence            34467777777 7765521  1     345677788888888888888888888877655 4557778888888888888


Q ss_pred             HHHHHHhhcC---CCChhHHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCHHH-HHH---------------HHHHHhc
Q 007573          256 NARLLFERIQ---PKDCVSFNAMIAGYAQNGVAEEALRLFSGMIKMDMQPDDAT-LVS---------------VFTACSA  316 (597)
Q Consensus       256 ~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~-~~~---------------ll~~~~~  316 (597)
                      +|...|+++.   +.+..++..+...|...|++++|+..++++.+..  |+... +..               .+..+..
T Consensus       116 ~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (368)
T 1fch_A          116 LAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYT--PAYAHLVTPAEEGAGGAGLGPSKRILGSLLS  193 (368)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--TTTGGGCC---------------CTTHHHHH
T ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHhhhhcccHHHHHHHHHhh
Confidence            8888888653   4567788889999999999999999999888754  32221 110               1122224


Q ss_pred             cchhHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHhccCCCChhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 007573          317 LQLLNEGRQSHVLVIRNGFEANVSVCNAVITMYSRCGGILDSELAFRQIHSPNLVSWNTIIAAFAQHGHYEKALIFFSQM  396 (597)
Q Consensus       317 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m  396 (597)
                      .|++++|...+..+.+.....                              ++..++..+...+...|++++|+..++++
T Consensus       194 ~~~~~~A~~~~~~a~~~~p~~------------------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  243 (368)
T 1fch_A          194 DSLFLEVKELFLAAVRLDPTS------------------------------IDPDVQCGLGVLFNLSGEYDKAVDCFTAA  243 (368)
T ss_dssp             HHHHHHHHHHHHHHHHHSTTS------------------------------CCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHhCcCc------------------------------ccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            445555555555444433111                              02445555555555555555555555555


Q ss_pred             HHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCC----
Q 007573          397 GLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMP-FEA----  471 (597)
Q Consensus       397 ~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p----  471 (597)
                      .+.. +.+..++..+...+...|++++|...++++.+.  .+.+...+..++.+|.+.|++++|...++++. ..|    
T Consensus       244 l~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~  320 (368)
T 1fch_A          244 LSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALEL--QPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRG  320 (368)
T ss_dssp             HHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC--
T ss_pred             HHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCC
Confidence            5431 223445555555555566666666666555542  12234555555666666666666666555443 111    


Q ss_pred             --------CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007573          472 --------DTGVWGSLLAACVINLNVELGELAAKKMR  500 (597)
Q Consensus       472 --------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  500 (597)
                              ...+|..+..++...|+.++|..++++.+
T Consensus       321 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l  357 (368)
T 1fch_A          321 PRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDL  357 (368)
T ss_dssp             ----CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCH
T ss_pred             ccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHH
Confidence                    14566666666666666666666665444

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.77  E-value=1.1e-15  Score=158.53  Aligned_cols=401  Identities=10%  Similarity=0.068  Sum_probs=276.9

Q ss_pred             CcchHHHHHHHHHhCCChhHHHHHHhhCCCC---CcchHHHHHHHHHcCCChHHHHHHHccCC--CCChhhHHHHHHH-H
Q 007573           80 DVITWNAIITGYWQNGFLQESKNLFQSMPVK---NIVSWNCMIAGCIDNDRIDDAFDYFQAMP--ERNTATYNAMISG-F  153 (597)
Q Consensus        80 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~l~~~-~  153 (597)
                      |..+|..++. +.+.|++++|..+|+++.+.   +...|..++..+.+.|++++|..+|+++.  .|++..|..++.. .
T Consensus        12 ~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~lw~~~~~~~~   90 (530)
T 2ooe_A           12 DLDAWSILIR-EAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLSYVR   90 (530)
T ss_dssp             CHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHHHHHHHHHHH
T ss_pred             CHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence            5668999998 47899999999999999754   66789999999999999999999999998  4677777777753 3


Q ss_pred             HcCCChHHHHH----HHccCC-----C-CCchhHHHHHHHHHh---------CCChhHHHHHHHhccc-CCc---chHHH
Q 007573          154 LKHGRLEEATR----LFEQMP-----R-RNVISYTAMLDGFMK---------KGEVDKARALSDYMSF-KNV---VSWTV  210 (597)
Q Consensus       154 ~~~g~~~~A~~----~~~~~~-----~-~~~~~~~~li~~~~~---------~g~~~~A~~~~~~m~~-~~~---~~~~~  210 (597)
                      ...|+.+.|.+    +|+...     . ++...|...+....+         .|+++.|..+|++... |..   ..|..
T Consensus        91 ~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~~  170 (530)
T 2ooe_A           91 ETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRD  170 (530)
T ss_dssp             HHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHHH
T ss_pred             HHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHHH
Confidence            45677777665    666542     1 355678888877655         6889999999999864 322   22222


Q ss_pred             HHHHHHcCCChHHHHHHHhhcCCCCCCchHHHHHHHHHHhcCCHHHHHHHHhh-------cC------CCC--------h
Q 007573          211 MITGYVKNERFCEARELFYRMPDYDKNVFVVTAMITGFCKVGMLENARLLFER-------IQ------PKD--------C  269 (597)
Q Consensus       211 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-------~~------~~~--------~  269 (597)
                      ........|. ..+..++..                   +.++++.|..++..       +.      +++        .
T Consensus       171 ~~~~e~~~~~-~~~~~~l~~-------------------~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~  230 (530)
T 2ooe_A          171 YNKYEEGINI-HLAKKMIED-------------------RSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQV  230 (530)
T ss_dssp             HHHHHHHHCH-HHHHHHHHT-------------------THHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHH
T ss_pred             HHHHHHhhch-hHHHHHHHH-------------------hhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHH
Confidence            2221101110 111111110                   12233444433332       11      111        2


Q ss_pred             hHHHHHHHHHHHc----CCh----hHHHHHHHHhHHCCCCCCHHHHHHHHHHHhc-------cchhH-------HHHHHH
Q 007573          270 VSFNAMIAGYAQN----GVA----EEALRLFSGMIKMDMQPDDATLVSVFTACSA-------LQLLN-------EGRQSH  327 (597)
Q Consensus       270 ~~~~~li~~~~~~----g~~----~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~-------~~~~~-------~a~~~~  327 (597)
                      ..|...+......    ++.    .+++.+|++..... +-+...|......+..       .|+.+       .|..++
T Consensus       231 ~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~  309 (530)
T 2ooe_A          231 DMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIY  309 (530)
T ss_dssp             HHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHH
Confidence            3455554333222    222    36777888877642 2345555555555543       57766       788888


Q ss_pred             HHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHhccC--CC-Ch-hhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 007573          328 VLVIRNGFEANVSVCNAVITMYSRCGGILDSELAFRQIH--SP-NL-VSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDP  403 (597)
Q Consensus       328 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~-~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p  403 (597)
                      +..++.-.+.+...+..++..+.+.|++++|..+|+++.  .| +. ..|...+..+.+.|+.++|.++|++..+.. +.
T Consensus       310 ~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~  388 (530)
T 2ooe_A          310 ERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RT  388 (530)
T ss_dssp             HHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TC
T ss_pred             HHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CC
Confidence            888763335567788889999999999999999998876  34 33 478888888889999999999999998753 22


Q ss_pred             ChHHHHHHHHH-HhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC-C---CCC--HHHH
Q 007573          404 DGITFLSLLSA-CGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMP-F---EAD--TGVW  476 (597)
Q Consensus       404 ~~~~~~~ll~~-~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~---~p~--~~~~  476 (597)
                      +...+...... +...|+.++|..+|+...+..  +.++..|..++..+.+.|+.++|..+|++.. .   .|+  ...|
T Consensus       389 ~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~--p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw  466 (530)
T 2ooe_A          389 RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIW  466 (530)
T ss_dssp             CTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHH
T ss_pred             chHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC--CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHH
Confidence            33334333222 335899999999999998753  3357889999999999999999999998865 2   232  4488


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 007573          477 GSLLAACVINLNVELGELAAKKMRELDPQ  505 (597)
Q Consensus       477 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~  505 (597)
                      ...+......|+.+.+..+..++.+..|+
T Consensus       467 ~~~~~~e~~~G~~~~~~~~~~r~~~~~p~  495 (530)
T 2ooe_A          467 ARFLAFESNIGDLASILKVEKRRFTAFRE  495 (530)
T ss_dssp             HHHHHHHHHSSCHHHHHHHHHHHHHHTHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHCch
Confidence            88899889999999999999999998885

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.76  E-value=2.2e-17  Score=162.82  Aligned_cols=270  Identities=11%  Similarity=-0.004  Sum_probs=182.2

Q ss_pred             chHHHHHHHHHHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHH
Q 007573          238 VFVVTAMITGFCKVGMLENARLLFERIQ---PKDCVSFNAMIAGYAQNGVAEEALRLFSGMIKMDMQPDDATLVSVFTAC  314 (597)
Q Consensus       238 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~  314 (597)
                      ...+..+...+.+.|++++|...|+++.   +.+..+|..+...|...|++++|+..|+++.+.. +.+...+..+...+
T Consensus        65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~  143 (365)
T 4eqf_A           65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSY  143 (365)
T ss_dssp             CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence            3446666666666677777766666643   2355566666666666666666666666666542 12334444444444


Q ss_pred             hccchhHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHhccCCCChhhHHHHHHHHHHcCCHHHHHHHHH
Q 007573          315 SALQLLNEGRQSHVLVIRNGFEANVSVCNAVITMYSRCGGILDSELAFRQIHSPNLVSWNTIIAAFAQHGHYEKALIFFS  394 (597)
Q Consensus       315 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~  394 (597)
                      ...|++++|...++.+.+.... +...+..+                     ......+..+...+...|++++|++.++
T Consensus       144 ~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~---------------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~  201 (365)
T 4eqf_A          144 TNTSHQQDACEALKNWIKQNPK-YKYLVKNK---------------------KGSPGLTRRMSKSPVDSSVLEGVKELYL  201 (365)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCHH-HHCC----------------------------------------CCHHHHHHHHHHH
T ss_pred             HccccHHHHHHHHHHHHHhCcc-chHHHhhh---------------------ccchHHHHHHHHHHhhhhhHHHHHHHHH
Confidence            4555555555554444443200 00000000                     0112234455778888999999999999


Q ss_pred             HHHHCCCC-CChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCC-
Q 007573          395 QMGLNGFD-PDGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMP-FEA-  471 (597)
Q Consensus       395 ~m~~~g~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-  471 (597)
                      ++.+.... ++..++..+...+...|++++|...++++.+.  .+.+...+..++.+|...|++++|.+.++++. ..| 
T Consensus       202 ~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~  279 (365)
T 4eqf_A          202 EAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTV--RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPG  279 (365)
T ss_dssp             HHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence            99876422 15788889999999999999999999998874  23457889999999999999999999998875 344 


Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC------------CCchHHHHHHHHHhcCCcHHHHHHHHH
Q 007573          472 DTGVWGSLLAACVINLNVELGELAAKKMRELDPQ------------NSAVYVMLSNLYAAAGMWRDVTRVRLL  532 (597)
Q Consensus       472 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~  532 (597)
                      +..++..++.+|...|++++|...+++++++.|+            +..++..++.++...|+.+.+.+..++
T Consensus       280 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~  352 (365)
T 4eqf_A          280 FIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG  352 (365)
T ss_dssp             CHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred             chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence            5778999999999999999999999999998876            367789999999999999988887664

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.76  E-value=4e-17  Score=158.09  Aligned_cols=273  Identities=11%  Similarity=-0.002  Sum_probs=192.1

Q ss_pred             hHHHHHHHHHHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHh
Q 007573          239 FVVTAMITGFCKVGMLENARLLFERIQ---PKDCVSFNAMIAGYAQNGVAEEALRLFSGMIKMDMQPDDATLVSVFTACS  315 (597)
Q Consensus       239 ~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~  315 (597)
                      ..+..+...+.+.|++++|..+|+++.   +.+..+|..+...+...|++++|...++++.+.. +.+...+..+...+.
T Consensus        22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~  100 (327)
T 3cv0_A           22 ENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHT  100 (327)
T ss_dssp             SCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHH
Confidence            345566667777777777777776653   3355667777777777777777777777776642 224445555555555


Q ss_pred             ccchhHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHhccCCCChhhHHHH-HH-HHHHcCCHHHHHHHH
Q 007573          316 ALQLLNEGRQSHVLVIRNGFEANVSVCNAVITMYSRCGGILDSELAFRQIHSPNLVSWNTI-IA-AFAQHGHYEKALIFF  393 (597)
Q Consensus       316 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l-i~-~~~~~g~~~~A~~~~  393 (597)
                      ..|++++|...+..+.+... .+...+..+....                  ++......+ .. .+...|++++|.+.+
T Consensus       101 ~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~A~~~~  161 (327)
T 3cv0_A          101 NEHNANAALASLRAWLLSQP-QYEQLGSVNLQAD------------------VDIDDLNVQSEDFFFAAPNEYRECRTLL  161 (327)
T ss_dssp             HTTCHHHHHHHHHHHHHTST-TTTTC--------------------------------------CCTTSHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHhCC-ccHHHHHHHhHHH------------------HHHHHHHHHHHhHHHHHcccHHHHHHHH
Confidence            66666666666665555431 1111111110000                  000011111 22 266678899999999


Q ss_pred             HHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC-C-CC
Q 007573          394 SQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMP-F-EA  471 (597)
Q Consensus       394 ~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~p  471 (597)
                      +++.+.. +.+...+..+...+...|++++|.+.++.+.+.  .+.+...+..++..|.+.|++++|.+.++++. . +.
T Consensus       162 ~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~  238 (327)
T 3cv0_A          162 HAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVEL--RPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPG  238 (327)
T ss_dssp             HHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence            9988753 346778888889999999999999999998864  23457888999999999999999999998865 3 34


Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC------------CCchHHHHHHHHHhcCCcHHHHHHHHHHH
Q 007573          472 DTGVWGSLLAACVINLNVELGELAAKKMRELDPQ------------NSAVYVMLSNLYAAAGMWRDVTRVRLLMK  534 (597)
Q Consensus       472 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  534 (597)
                      +...+..+...+...|++++|...++++++..|+            ++.++..++.++...|++++|.+++++..
T Consensus       239 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l  313 (327)
T 3cv0_A          239 YVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNV  313 (327)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred             CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence            5778999999999999999999999999999998            67889999999999999999999987543

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.74  E-value=1.4e-16  Score=163.01  Aligned_cols=374  Identities=11%  Similarity=0.015  Sum_probs=233.6

Q ss_pred             CcchHHHHHHHHHcCCChHHHHHHHccCC------------CCChhhHHHHHHHHHcCCChHHHHHHHccCCC-------
Q 007573          111 NIVSWNCMIAGCIDNDRIDDAFDYFQAMP------------ERNTATYNAMISGFLKHGRLEEATRLFEQMPR-------  171 (597)
Q Consensus       111 ~~~~~~~ll~~~~~~~~~~~A~~~~~~~~------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------  171 (597)
                      ....|+.|..++...|++++|++.|++..            +....+|+.+..+|...|++++|...+++..+       
T Consensus        50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~  129 (472)
T 4g1t_A           50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS  129 (472)
T ss_dssp             CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence            45678999999999999999999998764            22346789999999999999999998876532       


Q ss_pred             ----CCchhHHHHHHHHHh--CCChhHHHHHHHhcc--cC-CcchHHHHHHH---HHcCCChHHHHHHHhhcCCCCCCc-
Q 007573          172 ----RNVISYTAMLDGFMK--KGEVDKARALSDYMS--FK-NVVSWTVMITG---YVKNERFCEARELFYRMPDYDKNV-  238 (597)
Q Consensus       172 ----~~~~~~~~li~~~~~--~g~~~~A~~~~~~m~--~~-~~~~~~~ll~~---~~~~g~~~~a~~~~~~~~~~~~~~-  238 (597)
                          ....++..+..++.+  .+++++|+..|++..  .| +...+..+..+   +...++.++|++.++.+.++.|+. 
T Consensus       130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~  209 (472)
T 4g1t_A          130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQ  209 (472)
T ss_dssp             SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCH
T ss_pred             ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcch
Confidence                123456666555554  457999999999983  34 34455555444   456788889999999988877754 


Q ss_pred             hHHHHHHHHHHh----cCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCC-HHHHHHH
Q 007573          239 FVVTAMITGFCK----VGMLENARLLFERIQ---PKDCVSFNAMIAGYAQNGVAEEALRLFSGMIKMDMQPD-DATLVSV  310 (597)
Q Consensus       239 ~~~~~l~~~~~~----~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l  310 (597)
                      .++..+...+..    .|++++|.+.+++..   +.+..++..+...|...|++++|+..+++..+.  .|+ ...+..+
T Consensus       210 ~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l  287 (472)
T 4g1t_A          210 YLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEY--IPNNAYLHCQI  287 (472)
T ss_dssp             HHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHh--CCChHHHHHHH
Confidence            455555555544    467888999998753   457788999999999999999999999999875  454 3344444


Q ss_pred             HHHHhccchhHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHhccC---CCChhhHHHHHHHHHHcCCHH
Q 007573          311 FTACSALQLLNEGRQSHVLVIRNGFEANVSVCNAVITMYSRCGGILDSELAFRQIH---SPNLVSWNTIIAAFAQHGHYE  387 (597)
Q Consensus       311 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~  387 (597)
                      ...+...+....+         .. .      ..........+..+.|...++...   +.+..++..+...+...|+++
T Consensus       288 g~~y~~~~~~~~~---------~~-~------~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~  351 (472)
T 4g1t_A          288 GCCYRAKVFQVMN---------LR-E------NGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYE  351 (472)
T ss_dssp             HHHHHHHHHHHHH---------C-------------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHhhh---------HH-H------HHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHH
Confidence            3333221111100         00 0      000111112233566777776654   556678889999999999999


Q ss_pred             HHHHHHHHHHHCCCCCChH--HHHHHHH-HHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHH
Q 007573          388 KALIFFSQMGLNGFDPDGI--TFLSLLS-ACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQIT  464 (597)
Q Consensus       388 ~A~~~~~~m~~~g~~p~~~--~~~~ll~-~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~  464 (597)
                      +|++.|++..+....|...  .+..+.. .....|+.++|+..|++..+   +.|+.......         ...+.+++
T Consensus       352 ~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~---i~~~~~~~~~~---------~~~l~~~~  419 (472)
T 4g1t_A          352 EAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK---INQKSREKEKM---------KDKLQKIA  419 (472)
T ss_dssp             HHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH---SCCCCHHHHHH---------HHHHHHHH
T ss_pred             HHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCcccHHHHHH---------HHHHHHHH
Confidence            9999999998764333221  2333332 23577999999999998875   45553332222         22333444


Q ss_pred             hhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHH
Q 007573          465 QGMP--FEADTGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLS  514 (597)
Q Consensus       465 ~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~  514 (597)
                      ++..  .+.+..+|..++.++...|++++|++.|+++++++|.+|.+...+|
T Consensus       420 ~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G  471 (472)
T 4g1t_A          420 KMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG  471 (472)
T ss_dssp             HHHHHHCC-CTTHHHHHHHHHHHHHHCC------------------------
T ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence            3332  3446779999999999999999999999999999999888776654

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.74  E-value=1.2e-16  Score=157.49  Aligned_cols=232  Identities=12%  Similarity=0.047  Sum_probs=177.0

Q ss_pred             ChhHHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhccchhHHHHHHHHHHHHhCCCCcccHHHHHHH
Q 007573          268 DCVSFNAMIAGYAQNGVAEEALRLFSGMIKMDMQPDDATLVSVFTACSALQLLNEGRQSHVLVIRNGFEANVSVCNAVIT  347 (597)
Q Consensus       268 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  347 (597)
                      +...|..+...+.+.|++++|+..|+++.+..                                    +.+..++..+..
T Consensus        64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~------------------------------------p~~~~~~~~lg~  107 (365)
T 4eqf_A           64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD------------------------------------PGDAEAWQFLGI  107 (365)
T ss_dssp             TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC------------------------------------TTCHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC------------------------------------cCCHHHHHHHHH
Confidence            33456777777777777777777777766542                                    223444555666


Q ss_pred             HHHhcCCHHHHHHHHhccC---CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-----------hHHHHHHHH
Q 007573          348 MYSRCGGILDSELAFRQIH---SPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPD-----------GITFLSLLS  413 (597)
Q Consensus       348 ~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-----------~~~~~~ll~  413 (597)
                      +|.+.|++++|+..|+++.   +.+..+|..+...|...|++++|+..++++.+.  .|+           ...+..+..
T Consensus       108 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~l~~  185 (365)
T 4eqf_A          108 TQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQ--NPKYKYLVKNKKGSPGLTRRMSK  185 (365)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CHHHHCC----------------
T ss_pred             HHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHh--CccchHHHhhhccchHHHHHHHH
Confidence            6666666666666666554   445677888888888888899999888888764  232           223344577


Q ss_pred             HHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHhcCCHHH
Q 007573          414 ACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMP--FEADTGVWGSLLAACVINLNVEL  491 (597)
Q Consensus       414 ~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~  491 (597)
                      .+...|++++|.+.++++.+...-.++...+..++..|.+.|++++|.+.++++.  .+.+..+|..++.++...|++++
T Consensus       186 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~  265 (365)
T 4eqf_A          186 SPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEE  265 (365)
T ss_dssp             ---CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence            8899999999999999998863333368899999999999999999999999876  34467899999999999999999


Q ss_pred             HHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHhCC
Q 007573          492 GELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRVRLLMKEQG  537 (597)
Q Consensus       492 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  537 (597)
                      |+..++++++.+|+++.++..++.+|...|++++|.+.++++.+..
T Consensus       266 A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  311 (365)
T 4eqf_A          266 AVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQ  311 (365)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence            9999999999999999999999999999999999999999998744

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.70  E-value=3.4e-15  Score=144.47  Aligned_cols=224  Identities=12%  Similarity=0.033  Sum_probs=121.5

Q ss_pred             chHHHHHHHHHcCCChHHHHHHHhhcCCCCC-CchHHHHHHHHHHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHH
Q 007573          206 VSWTVMITGYVKNERFCEARELFYRMPDYDK-NVFVVTAMITGFCKVGMLENARLLFERIQ---PKDCVSFNAMIAGYAQ  281 (597)
Q Consensus       206 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~  281 (597)
                      ..+..+...+...|++++|..+++.+.+..| +..++..+...+.+.|++++|...++++.   +.+..++..+...+..
T Consensus        22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~  101 (327)
T 3cv0_A           22 ENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN  101 (327)
T ss_dssp             SCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHH
Confidence            3445555556666666666666666555333 34455666666666677777766666543   3455677777777788


Q ss_pred             cCChhHHHHHHHHhHHCCCCCCHHHHHHHH--------------H--HHhccchhHHHHHHHHHHHHhCCCCcccHHHHH
Q 007573          282 NGVAEEALRLFSGMIKMDMQPDDATLVSVF--------------T--ACSALQLLNEGRQSHVLVIRNGFEANVSVCNAV  345 (597)
Q Consensus       282 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll--------------~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  345 (597)
                      .|++++|+..++++.+..  |+.......+              .  .+...|++++|...+..+.+.. +.+..++..+
T Consensus       102 ~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l  178 (327)
T 3cv0_A          102 EHNANAALASLRAWLLSQ--PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASL  178 (327)
T ss_dssp             TTCHHHHHHHHHHHHHTS--TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhC--CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHH
Confidence            888888888887777642  2222111111              2  2556666777777766666554 2344445555


Q ss_pred             HHHHHhcCCHHHHHHHHhccC---CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHH
Q 007573          346 ITMYSRCGGILDSELAFRQIH---SPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVN  422 (597)
Q Consensus       346 ~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~  422 (597)
                      ...|.+.|++++|...++++.   +.+..+|..+...+...|++++|+..++++.+.. +.+..++..+..++...|+++
T Consensus       179 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~  257 (327)
T 3cv0_A          179 GVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYD  257 (327)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHH
Confidence            555555555555555554443   2334445555555555555555555555544431 222344444444455555555


Q ss_pred             HHHHHHHHhHH
Q 007573          423 ESMDLFELMVK  433 (597)
Q Consensus       423 ~a~~~~~~~~~  433 (597)
                      +|.+.++++.+
T Consensus       258 ~A~~~~~~a~~  268 (327)
T 3cv0_A          258 LAAKQLVRAIY  268 (327)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            55555544443

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.69  E-value=1.2e-14  Score=137.70  Aligned_cols=244  Identities=7%  Similarity=-0.034  Sum_probs=170.1

Q ss_pred             HHHHcCCChHHHHHHHccCCCCCc----hhHHHHHHHHHhCCChhHHHHHHHhcccCCcchHHHHHHHHHcCCChHHHHH
Q 007573          151 SGFLKHGRLEEATRLFEQMPRRNV----ISYTAMLDGFMKKGEVDKARALSDYMSFKNVVSWTVMITGYVKNERFCEARE  226 (597)
Q Consensus       151 ~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ll~~~~~~g~~~~a~~  226 (597)
                      +-....|++..|+..++.....++    .....+.++|...|+++.|+..++....|+..++..+...+...++.++|.+
T Consensus         7 ~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~~~~~~~a~~~la~~~~~~~~~~~A~~   86 (291)
T 3mkr_A            7 KNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLASHSRRDAIVA   86 (291)
T ss_dssp             HHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTTSCHHHHHHHHHHHHHHCSTTHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcccCChhHHHHHHHHHHHcCCCcHHHHHH
Confidence            334456888888888777655332    2345567888888888888877766555566777778888888888888888


Q ss_pred             HHhhcCCC--CCC-chHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCC
Q 007573          227 LFYRMPDY--DKN-VFVVTAMITGFCKVGMLENARLLFERIQPKDCVSFNAMIAGYAQNGVAEEALRLFSGMIKMDMQPD  303 (597)
Q Consensus       227 ~~~~~~~~--~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~  303 (597)
                      .++.+...  .|+ ...+..+...+.+.|++++|++.+++  +.+...+..++..|.+.|++++|...|+++.+..  |+
T Consensus        87 ~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~  162 (291)
T 3mkr_A           87 ELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD--ED  162 (291)
T ss_dssp             HHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT
T ss_pred             HHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--cC
Confidence            88887542  354 45666777888999999999999988  5678889999999999999999999999998763  55


Q ss_pred             HHHHH---HHHHHHhccchhHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHhccC---CCChhhHHHHH
Q 007573          304 DATLV---SVFTACSALQLLNEGRQSHVLVIRNGFEANVSVCNAVITMYSRCGGILDSELAFRQIH---SPNLVSWNTII  377 (597)
Q Consensus       304 ~~~~~---~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li  377 (597)
                      .....   ..+..+...|+.++|..+++.+.+.. +.+..+++.+..++.+.|++++|+..|++..   +.+..++..++
T Consensus       163 ~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~  241 (291)
T 3mkr_A          163 ATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLV  241 (291)
T ss_dssp             CHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            43211   12233334577777877777777763 4556666666666666666666666666654   34555666666


Q ss_pred             HHHHHcCCHHH-HHHHHHHHHHC
Q 007573          378 AAFAQHGHYEK-ALIFFSQMGLN  399 (597)
Q Consensus       378 ~~~~~~g~~~~-A~~~~~~m~~~  399 (597)
                      ..+...|+.++ +.++++++.+.
T Consensus       242 ~~~~~~g~~~eaa~~~~~~~~~~  264 (291)
T 3mkr_A          242 VLSQHLGKPPEVTNRYLSQLKDA  264 (291)
T ss_dssp             HHHHHTTCCHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHh
Confidence            66666666654 45566666543

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.68  E-value=1.5e-15  Score=137.37  Aligned_cols=194  Identities=11%  Similarity=-0.008  Sum_probs=158.1

Q ss_pred             CCcccHHHHHHHHHHhcCCHHHHHHHHhccC---CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHH
Q 007573          336 EANVSVCNAVITMYSRCGGILDSELAFRQIH---SPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLL  412 (597)
Q Consensus       336 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll  412 (597)
                      |++...+..+...+.+.|++++|...|++..   +.+...|..+...+.+.|++++|+..+++..+.. +.+...+..+.
T Consensus         2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg   80 (217)
T 2pl2_A            2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS   80 (217)
T ss_dssp             --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence            5677788888899999999999999998765   5567889999999999999999999999998753 33467888888


Q ss_pred             HHHhcc-----------CcHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCCCHHHHHHH
Q 007573          413 SACGHA-----------GKVNESMDLFELMVKVYGIIP-SSEHYTCLVDILSRAGQLEKAWQITQGMP-FEADTGVWGSL  479 (597)
Q Consensus       413 ~~~~~~-----------g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l  479 (597)
                      .++...           |++++|...+++..+.   .| +...+..+..+|...|++++|++.+++.. ...+...+..+
T Consensus        81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l  157 (217)
T 2pl2_A           81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERV---NPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSAL  157 (217)
T ss_dssp             HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred             HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHH
Confidence            899999           9999999999999864   34 47888999999999999999999998875 22778899999


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcHHHHHHHHHH
Q 007573          480 LAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRVRLLM  533 (597)
Q Consensus       480 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  533 (597)
                      ..++...|++++|+..++++++++|+++.++..++.++...|++++|.+.+++.
T Consensus       158 a~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~  211 (217)
T 2pl2_A          158 AELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALE  211 (217)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC--------------
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999998865

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.65  E-value=1.4e-14  Score=134.88  Aligned_cols=226  Identities=12%  Similarity=0.029  Sum_probs=166.8

Q ss_pred             hHHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhccchhHHHHHHHHHHHHhCCCCcccHHHHHHHHH
Q 007573          270 VSFNAMIAGYAQNGVAEEALRLFSGMIKMDMQPDDATLVSVFTACSALQLLNEGRQSHVLVIRNGFEANVSVCNAVITMY  349 (597)
Q Consensus       270 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  349 (597)
                      ..|..+...+...|++++|+..|++..+..  .+...+..+..++...|++++|...+..+++.....            
T Consensus         6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~------------   71 (258)
T 3uq3_A            6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREM------------   71 (258)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT------------
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCccc------------
Confidence            456666667777777777777777766654  444444444444444444444444444443321000            


Q ss_pred             HhcCCHHHHHHHHhccCCCC----hhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHH
Q 007573          350 SRCGGILDSELAFRQIHSPN----LVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESM  425 (597)
Q Consensus       350 ~~~g~~~~A~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~  425 (597)
                                       .++    ...|..+...+...|++++|++.|+++.+.  .|+.       ..+...|++++|.
T Consensus        72 -----------------~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~  125 (258)
T 3uq3_A           72 -----------------RADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKEL  125 (258)
T ss_dssp             -----------------TCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHH
T ss_pred             -----------------ccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHH
Confidence                             011    456777888888889999999999888874  4553       3455667889999


Q ss_pred             HHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 007573          426 DLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMP--FEADTGVWGSLLAACVINLNVELGELAAKKMRELD  503 (597)
Q Consensus       426 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  503 (597)
                      ..++.+.+.  .+.+...+..++..+...|++++|.+.++++.  .+.+..+|..++..+...|++++|+..++++++.+
T Consensus       126 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~  203 (258)
T 3uq3_A          126 KKAEAEAYV--NPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD  203 (258)
T ss_dssp             HHHHHHHHC--CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHc--CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence            999888752  22346778889999999999999999998875  34467789999999999999999999999999999


Q ss_pred             CCCCchHHHHHHHHHhcCCcHHHHHHHHHHHhCC
Q 007573          504 PQNSAVYVMLSNLYAAAGMWRDVTRVRLLMKEQG  537 (597)
Q Consensus       504 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  537 (597)
                      |+++.++..++.+|...|++++|.+.+++..+..
T Consensus       204 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~  237 (258)
T 3uq3_A          204 PNFVRAYIRKATAQIAVKEYASALETLDAARTKD  237 (258)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC
Confidence            9999999999999999999999999999987643

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.63  E-value=1.5e-14  Score=134.62  Aligned_cols=235  Identities=11%  Similarity=0.007  Sum_probs=171.2

Q ss_pred             chHHHHHHHHHHhcCCHHHHHHHHhhcCC--CChhHHHHHHHHHHHcCChhHHHHHHHHhHHCC--CCCC----HHHHHH
Q 007573          238 VFVVTAMITGFCKVGMLENARLLFERIQP--KDCVSFNAMIAGYAQNGVAEEALRLFSGMIKMD--MQPD----DATLVS  309 (597)
Q Consensus       238 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~----~~~~~~  309 (597)
                      ...+..+...+...|++++|...|++..+  .+...|..+...+...|++++|+..+++..+..  ..|+    ...+..
T Consensus         5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~   84 (258)
T 3uq3_A            5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR   84 (258)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence            34678889999999999999999987532  677899999999999999999999999987642  1112    233444


Q ss_pred             HHHHHhccchhHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHhccCCCChhhHHHHHHHHHHcCCHHHH
Q 007573          310 VFTACSALQLLNEGRQSHVLVIRNGFEANVSVCNAVITMYSRCGGILDSELAFRQIHSPNLVSWNTIIAAFAQHGHYEKA  389 (597)
Q Consensus       310 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A  389 (597)
                      +...+...|++++|...+..+.+..                                 |+.       ..+...|++++|
T Consensus        85 l~~~~~~~~~~~~A~~~~~~a~~~~---------------------------------~~~-------~~~~~~~~~~~a  124 (258)
T 3uq3_A           85 IGNAYHKLGDLKKTIEYYQKSLTEH---------------------------------RTA-------DILTKLRNAEKE  124 (258)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHC---------------------------------CCH-------HHHHHHHHHHHH
T ss_pred             HHHHHHHcccHHHHHHHHHHHHhcC---------------------------------chh-------HHHHHHhHHHHH
Confidence            4444444444444444444444332                                 221       235556778888


Q ss_pred             HHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC-
Q 007573          390 LIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMP-  468 (597)
Q Consensus       390 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-  468 (597)
                      ...++++.... +.+...+..+...+...|++++|...++.+.+.  .+.+...+..++..|.+.|++++|.+.+++.. 
T Consensus       125 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~  201 (258)
T 3uq3_A          125 LKKAEAEAYVN-PEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIE  201 (258)
T ss_dssp             HHHHHHHHHCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcC-cchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            88888877642 223556777778888888888888888888764  23357788888888899999999998888765 


Q ss_pred             -CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC------CCCCchHHHHHH
Q 007573          469 -FEADTGVWGSLLAACVINLNVELGELAAKKMRELD------PQNSAVYVMLSN  515 (597)
Q Consensus       469 -~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~------p~~~~~~~~l~~  515 (597)
                       .+.+...|..+...+...|++++|...++++++++      |.+..++..+..
T Consensus       202 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~  255 (258)
T 3uq3_A          202 KDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYK  255 (258)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred             hCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHH
Confidence             33457788889999999999999999999999988      766665555543

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=99.63  E-value=3.1e-16  Score=163.53  Aligned_cols=131  Identities=14%  Similarity=0.176  Sum_probs=113.6

Q ss_pred             CCcccHHHHHHHHHHhcCCHHHHHHHHhccC-------CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHH
Q 007573          336 EANVSVCNAVITMYSRCGGILDSELAFRQIH-------SPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITF  408 (597)
Q Consensus       336 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~  408 (597)
                      ..-..+||+||++|++.|++++|.++|+.|.       .||+++||+||.+|++.|+.++|.++|++|.+.|+.||.+||
T Consensus       124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY  203 (1134)
T 3spa_A          124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY  203 (1134)
T ss_dssp             CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred             HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Confidence            3345689999999999999999999997653       689999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhccCc-HHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhC
Q 007573          409 LSLLSACGHAGK-VNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGM  467 (597)
Q Consensus       409 ~~ll~~~~~~g~-~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~  467 (597)
                      +++|.++++.|+ .++|.++|++|.+. |+.||..+|++++....+.+-++...++...+
T Consensus       204 ntLI~glcK~G~~~e~A~~Ll~EM~~k-G~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f  262 (1134)
T 3spa_A          204 AAALQCMGRQDQDAGTIERCLEQMSQE-GLKLQALFTAVLLSEEDRATVLKAVHKVKPTF  262 (1134)
T ss_dssp             HHHHHHHHHHTCCHHHHHHHHHHHHHH-TCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCC
T ss_pred             HHHHHHHHhCCCcHHHHHHHHHHHHHc-CCCCChhhcccccChhhHHHHHHHHHHhCccc
Confidence            999999999997 57899999999987 99999999999988777766555555554333

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.61  E-value=1.7e-14  Score=145.80  Aligned_cols=369  Identities=9%  Similarity=0.015  Sum_probs=188.8

Q ss_pred             HHHcCCChHHHHHHHccCC-CCChhhHHHHHHHHHcCCCh---HHHHHHHccCCCCCchhHHHHHHHHHhCC-----Chh
Q 007573          121 GCIDNDRIDDAFDYFQAMP-ERNTATYNAMISGFLKHGRL---EEATRLFEQMPRRNVISYTAMLDGFMKKG-----EVD  191 (597)
Q Consensus       121 ~~~~~~~~~~A~~~~~~~~-~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~li~~~~~~g-----~~~  191 (597)
                      .+.+.|++++|.+.|++.. ..++..+..|...|...|+.   ++|...|++..+.++..+..+...+...|     +++
T Consensus        12 ~~~~~g~~~~A~~~~~~aa~~g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~~~~~~   91 (452)
T 3e4b_A           12 EALKRGDTVTAQQNYQQLAELGYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGATEAEHH   91 (452)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCCTGGGTCC----------------------------CHHHHHHHHHTC--CCHHHHH
T ss_pred             HHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCcCHH
Confidence            3334444444444444443 12333344444444445555   55555555554444445555555444433     445


Q ss_pred             HHHHHHHhcccC-CcchHHHHHHHHHcCCChHHH---HHHHhhcCCCCCCchHHHHHHHHHHhcC----CHHHHHHHHhh
Q 007573          192 KARALSDYMSFK-NVVSWTVMITGYVKNERFCEA---RELFYRMPDYDKNVFVVTAMITGFCKVG----MLENARLLFER  263 (597)
Q Consensus       192 ~A~~~~~~m~~~-~~~~~~~ll~~~~~~g~~~~a---~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~A~~~~~~  263 (597)
                      +|+..|++...+ +...+..+...|...+..+++   .+.+..... ..+......+...|...+    ..+.+..+++.
T Consensus        92 ~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~-~g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~  170 (452)
T 3e4b_A           92 EAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQA-AGYPEAGLAQVLLYRTQGTYDQHLDDVERICKA  170 (452)
T ss_dssp             HHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHH-HTCTTHHHHHHHHHHHHTCGGGGHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH-CCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHH
Confidence            555555555333 234455555555444332222   222222111 012344455555555555    33444445555


Q ss_pred             cCCCChhHHHHHHHHHHHcC---ChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhccchhHHHHHHHHHHHHhCCCCccc
Q 007573          264 IQPKDCVSFNAMIAGYAQNG---VAEEALRLFSGMIKMDMQPDDATLVSVFTACSALQLLNEGRQSHVLVIRNGFEANVS  340 (597)
Q Consensus       264 ~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  340 (597)
                      ....++.++..|...|...|   +.++|+..|++..+.| .++...+                                 
T Consensus       171 a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~---------------------------------  216 (452)
T 3e4b_A          171 ALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRV---------------------------------  216 (452)
T ss_dssp             HTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHH---------------------------------
T ss_pred             HHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHH---------------------------------
Confidence            55555556666666666666   6666666666666654 2222222                                 


Q ss_pred             HHHHHHHHHHhc----CCHHHHHHHHhccCCCChhhHHHHHHH-H--HHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHH
Q 007573          341 VCNAVITMYSRC----GGILDSELAFRQIHSPNLVSWNTIIAA-F--AQHGHYEKALIFFSQMGLNGFDPDGITFLSLLS  413 (597)
Q Consensus       341 ~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~li~~-~--~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~  413 (597)
                        ..|..+|...    ++.++|...|++..+.++..+..+... +  ...+++++|+++|++..+.|   +...+..+..
T Consensus       217 --~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~  291 (452)
T 3e4b_A          217 --DSVARVLGDATLGTPDEKTAQALLEKIAPGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGK  291 (452)
T ss_dssp             --HHHHHHHTCGGGSSCCHHHHHHHHHHHGGGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred             --HHHHHHHhCCCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHH
Confidence              2233333222    455555555555443344455555554 3  34678888888888887765   4555666666


Q ss_pred             HHhccC-----cHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhh----cCCHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 007573          414 ACGHAG-----KVNESMDLFELMVKVYGIIPSSEHYTCLVDILSR----AGQLEKAWQITQGMPFEADTGVWGSLLAACV  484 (597)
Q Consensus       414 ~~~~~g-----~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~  484 (597)
                      .|. .|     ++++|.+.|++..     .-++..+..|..+|..    ..+.++|.+.|++.....+......|...|.
T Consensus       292 ~y~-~G~g~~~d~~~A~~~~~~Aa-----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~  365 (452)
T 3e4b_A          292 LYY-EGKWVPADAKAAEAHFEKAV-----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFAIAQLFS  365 (452)
T ss_dssp             HHH-HCSSSCCCHHHHHHHHHTTT-----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHHHHHHHHH
T ss_pred             HHH-cCCCCCCCHHHHHHHHHHHh-----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHHHHHHHHH
Confidence            665 44     8888888887664     3356677777777765    3488888888887653445556666666665


Q ss_pred             h----cCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHh
Q 007573          485 I----NLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRVRLLMKE  535 (597)
Q Consensus       485 ~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  535 (597)
                      .    ..|.++|...++++.+.++.........+......++.++|.++.++...
T Consensus       366 ~G~g~~~d~~~A~~~~~~A~~~g~~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~  420 (452)
T 3e4b_A          366 QGKGTKPDPLNAYVFSQLAKAQDTPEANDLATQLEAPLTPAQRAEGQRLVQQELA  420 (452)
T ss_dssp             SCTTBCCCHHHHHHHHHHHHTTCCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred             hCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence            3    45889999999999887765433222222222334456677777666554

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.61  E-value=5.7e-14  Score=132.12  Aligned_cols=239  Identities=9%  Similarity=-0.091  Sum_probs=167.2

Q ss_pred             CChhHHHHHHHHhHHCCCC--C-CHHHHHHHHHHHhccchhHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHH
Q 007573          283 GVAEEALRLFSGMIKMDMQ--P-DDATLVSVFTACSALQLLNEGRQSHVLVIRNGFEANVSVCNAVITMYSRCGGILDSE  359 (597)
Q Consensus       283 g~~~~A~~~~~~m~~~g~~--p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~  359 (597)
                      |++++|+..|+++.+....  | +...+..+...+...|++++|...+..+++.. +.+..++..+...|...|++++|.
T Consensus        19 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~   97 (275)
T 1xnf_A           19 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAY   97 (275)
T ss_dssp             HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             chHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHHH
Confidence            4455555555555543211  1 23334444455555555555555555555543 334566677777777778888888


Q ss_pred             HHHhccC---CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcC
Q 007573          360 LAFRQIH---SPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMVKVYG  436 (597)
Q Consensus       360 ~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~  436 (597)
                      ..|++..   +.+...|..+...+...|++++|+..|+++.+.  .|+.......+..+...|++++|...++.....  
T Consensus        98 ~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--  173 (275)
T 1xnf_A           98 EAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK--  173 (275)
T ss_dssp             HHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH--
T ss_pred             HHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc--
Confidence            7777665   456778888999999999999999999999875  455555555555667779999999999888764  


Q ss_pred             CCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchH
Q 007573          437 IIPSSEHYTCLVDILSRAGQLEKAWQITQGMP-FEAD-----TGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVY  510 (597)
Q Consensus       437 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~  510 (597)
                      .+++...+ .++..+...++.++|.+.+++.. ..|+     ...+..++..+...|++++|...++++++.+|++...+
T Consensus       174 ~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  252 (275)
T 1xnf_A          174 SDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEH  252 (275)
T ss_dssp             SCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHHH
T ss_pred             CCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHHHH
Confidence            23444444 37777888888999999998765 2232     46788899999999999999999999999999875544


Q ss_pred             HHHHHHHHhcCCcHHHHHHH
Q 007573          511 VMLSNLYAAAGMWRDVTRVR  530 (597)
Q Consensus       511 ~~l~~~~~~~g~~~~A~~~~  530 (597)
                         +.++...|++++|++.+
T Consensus       253 ---~~~~~~l~~~~~a~~~~  269 (275)
T 1xnf_A          253 ---RYALLELSLLGQDQDDL  269 (275)
T ss_dssp             ---HHHHHHHHHHHHC----
T ss_pred             ---HHHHHHHHHHHhhHHHH
Confidence               66788889999988776

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=99.60  E-value=9.5e-16  Score=159.95  Aligned_cols=147  Identities=12%  Similarity=0.101  Sum_probs=119.4

Q ss_pred             chHHHHHHHHHHhcCCHHHHHHHHhhcC-------CCChhHHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCHHHHHHH
Q 007573          238 VFVVTAMITGFCKVGMLENARLLFERIQ-------PKDCVSFNAMIAGYAQNGVAEEALRLFSGMIKMDMQPDDATLVSV  310 (597)
Q Consensus       238 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l  310 (597)
                      ..+|++||++|++.|++++|.++|++|.       .+|+++||+||.+|++.|+.++|.++|++|.+.|+.||..||+++
T Consensus       127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL  206 (1134)
T 3spa_A          127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA  206 (1134)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence            4579999999999999999999997653       579999999999999999999999999999999999999999999


Q ss_pred             HHHHhccchh-HHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHhccCC-----CChhhHHHHHHHHHHcC
Q 007573          311 FTACSALQLL-NEGRQSHVLVIRNGFEANVSVCNAVITMYSRCGGILDSELAFRQIHS-----PNLVSWNTIIAAFAQHG  384 (597)
Q Consensus       311 l~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g  384 (597)
                      |.++++.|.. +.|.+++++|.+.|+.||..+|++++....+.+-++.+.++...+..     +.+.+...+.+.|.+.+
T Consensus       207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~s~d~  286 (1134)
T 3spa_A          207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDG  286 (1134)
T ss_dssp             HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHHCCCS
T ss_pred             HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHHHHccCC
Confidence            9999999974 78899999999999999999999999887776555555444444432     11234444555555444

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.60  E-value=4.9e-14  Score=132.38  Aligned_cols=247  Identities=12%  Similarity=-0.008  Sum_probs=137.7

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCC--HHHHHHHHHHH
Q 007573          240 VVTAMITGFCKVGMLENARLLFERIQP---KDCVSFNAMIAGYAQNGVAEEALRLFSGMIKMDMQPD--DATLVSVFTAC  314 (597)
Q Consensus       240 ~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~ll~~~  314 (597)
                      ........+...|++++|+..|++..+   .+...|..+...|...|++++|+..+++..+.+..|+  ...+..+...+
T Consensus         5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~   84 (272)
T 3u4t_A            5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKIL   84 (272)
T ss_dssp             CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence            344556667777777777777776532   3445677777777777777777777777766321111  11244444444


Q ss_pred             hccchhHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHhccCCCChhhHHHHHHHHHHcCCHHHHHHHHH
Q 007573          315 SALQLLNEGRQSHVLVIRNGFEANVSVCNAVITMYSRCGGILDSELAFRQIHSPNLVSWNTIIAAFAQHGHYEKALIFFS  394 (597)
Q Consensus       315 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~  394 (597)
                      ...|++++|...+..+.+..                                +.+..+|..+...|...|++++|++.++
T Consensus        85 ~~~~~~~~A~~~~~~a~~~~--------------------------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~  132 (272)
T 3u4t_A           85 MKKGQDSLAIQQYQAAVDRD--------------------------------TTRLDMYGQIGSYFYNKGNFPLAIQYME  132 (272)
T ss_dssp             HHTTCHHHHHHHHHHHHHHS--------------------------------TTCTHHHHHHHHHHHHTTCHHHHHHHHG
T ss_pred             HHcccHHHHHHHHHHHHhcC--------------------------------cccHHHHHHHHHHHHHccCHHHHHHHHH
Confidence            45555555555555544433                                2333455555555555555555555555


Q ss_pred             HHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCC---HHHHHHHHhhCC---
Q 007573          395 QMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQ---LEKAWQITQGMP---  468 (597)
Q Consensus       395 ~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~---  468 (597)
                      +..+.. +.+...+..+...+...+++++|.+.|+.+.+..  +.+...+..+..++...|+   +++|...+++..   
T Consensus       133 ~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~  209 (272)
T 3u4t_A          133 KQIRPT-TTDPKVFYELGQAYYYNKEYVKADSSFVKVLELK--PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVC  209 (272)
T ss_dssp             GGCCSS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHH
T ss_pred             HHhhcC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHH
Confidence            554331 2223334444412333335666666666555431  1224455555555555555   444554444432   


Q ss_pred             -CCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcC
Q 007573          469 -FEAD------TGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAG  521 (597)
Q Consensus       469 -~~p~------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g  521 (597)
                       ..|+      ..+|..+...+...|++++|...++++++++|+++.+...+.......+
T Consensus       210 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~  269 (272)
T 3u4t_A          210 APGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHHH  269 (272)
T ss_dssp             GGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC-------
T ss_pred             hcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhcccc
Confidence             1122      2467778888999999999999999999999999887777766655443

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.58  E-value=1.9e-13  Score=126.77  Aligned_cols=197  Identities=8%  Similarity=-0.059  Sum_probs=160.9

Q ss_pred             ccHHHHHHHHHHhcCCHHHHHHHHhccC---CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHH
Q 007573          339 VSVCNAVITMYSRCGGILDSELAFRQIH---SPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSAC  415 (597)
Q Consensus       339 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~  415 (597)
                      ...+..+...+...|++++|...|+++.   +.+...|..+...+...|++++|.+.++++.+.. +.+...+..+...+
T Consensus        37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~  115 (252)
T 2ho1_A           37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL  115 (252)
T ss_dssp             HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence            4556777778888888888888888765   4567788888888889999999999998887753 34567788888888


Q ss_pred             hccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHhcCCHHHH
Q 007573          416 GHAGKVNESMDLFELMVKVYGIIPS-SEHYTCLVDILSRAGQLEKAWQITQGMP--FEADTGVWGSLLAACVINLNVELG  492 (597)
Q Consensus       416 ~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a  492 (597)
                      ...|++++|.++++++.+ .+..|+ ...+..++..|...|++++|.+.++++.  .+.+...+..++..+...|++++|
T Consensus       116 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  194 (252)
T 2ho1_A          116 YEQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPA  194 (252)
T ss_dssp             HHTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHH
Confidence            889999999999988875 234554 6678888888999999999999988765  334577888888889999999999


Q ss_pred             HHHHHHHHhcCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHhCC
Q 007573          493 ELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRVRLLMKEQG  537 (597)
Q Consensus       493 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  537 (597)
                      ...++++++..|.++..+..++.++...|++++|.+.++++.+..
T Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~  239 (252)
T 2ho1_A          195 RQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY  239 (252)
T ss_dssp             HHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence            999999999999888888899999999999999999999887754

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.58  E-value=1.7e-13  Score=138.45  Aligned_cols=337  Identities=9%  Similarity=-0.020  Sum_probs=196.2

Q ss_pred             HHHHHhCCChhHHHHHHHhcccC-CcchHHHHHHHHHcCCCh---HHHHHHHhhcCCCCCCchHHHHHHHHHHhcC----
Q 007573          181 LDGFMKKGEVDKARALSDYMSFK-NVVSWTVMITGYVKNERF---CEARELFYRMPDYDKNVFVVTAMITGFCKVG----  252 (597)
Q Consensus       181 i~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~ll~~~~~~g~~---~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g----  252 (597)
                      ...+.+.|++++|+.+|++...+ +...+..+...|...|+.   ++|...|+.+.+.  +...+..+...+...|    
T Consensus        10 a~~~~~~g~~~~A~~~~~~aa~~g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~--~~~A~~~Lg~~~~~~~~~~~   87 (452)
T 3e4b_A           10 ANEALKRGDTVTAQQNYQQLAELGYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT--SPRAQARLGRLLAAKPGATE   87 (452)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTCCTGGGTCC------------------------------CHHHHHHHHHTC--CCH
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC--CHHHHHHHHHHHHhCCCCCC
Confidence            33344444555555555444221 233333344444444444   4555555555442  3334444444333333    


Q ss_pred             -CHHHHHHHHhhcCC-CChhHHHHHHHHHHHcCChh---HHHHHHHHhHHCCCCCCHHHHHHHHHHHhccc----hhHHH
Q 007573          253 -MLENARLLFERIQP-KDCVSFNAMIAGYAQNGVAE---EALRLFSGMIKMDMQPDDATLVSVFTACSALQ----LLNEG  323 (597)
Q Consensus       253 -~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~---~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~----~~~~a  323 (597)
                       ++++|...|++..+ .+...+..|...|...+..+   ++...+......|.   ......+...+...+    +.+.+
T Consensus        88 ~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~Lg~~y~~~~~~~~~~~~a  164 (452)
T 3e4b_A           88 AEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGY---PEAGLAQVLLYRTQGTYDQHLDDV  164 (452)
T ss_dssp             HHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTC---TTHHHHHHHHHHHHTCGGGGHHHH
T ss_pred             cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCC---HHHHHHHHHHHHcCCCcccCHHHH
Confidence             44555555554432 23345555555555544322   23333333333332   122222333333333    22333


Q ss_pred             HHHHHHHHHhCCCCcccHHHHHHHHHHhcC---CHHHHHHHHhccC---CCChhhHHHHHHHHHHc----CCHHHHHHHH
Q 007573          324 RQSHVLVIRNGFEANVSVCNAVITMYSRCG---GILDSELAFRQIH---SPNLVSWNTIIAAFAQH----GHYEKALIFF  393 (597)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~----g~~~~A~~~~  393 (597)
                      ..++...    ...++..+..|..+|.+.|   +.++|...|++..   +++...+..+...|...    +++++|+++|
T Consensus       165 ~~~~~~a----~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~  240 (452)
T 3e4b_A          165 ERICKAA----LNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALL  240 (452)
T ss_dssp             HHHHHHH----TTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHH
T ss_pred             HHHHHHH----HcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHH
Confidence            3332222    2333447777888888888   8888888887765   34444446677776544    6999999999


Q ss_pred             HHHHHCCCCCChHHHHHHHHH-H--hccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcC-----CHHHHHHHHh
Q 007573          394 SQMGLNGFDPDGITFLSLLSA-C--GHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAG-----QLEKAWQITQ  465 (597)
Q Consensus       394 ~~m~~~g~~p~~~~~~~ll~~-~--~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-----~~~~A~~~~~  465 (597)
                      ++.. .|   +...+..+... +  ...+++++|.+.|++..+. |   ++..+..|..+|. .|     ++++|.+.|+
T Consensus       241 ~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~-g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~  311 (452)
T 3e4b_A          241 EKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA-D---QPRAELLLGKLYY-EGKWVPADAKAAEAHFE  311 (452)
T ss_dssp             HHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHH
T ss_pred             HHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHH
Confidence            9987 33   44555556555 3  5689999999999998864 4   6777888888887 55     9999999999


Q ss_pred             hCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHh----cCCcHHHHHHHHHHHhCC
Q 007573          466 GMPFEADTGVWGSLLAACVI----NLNVELGELAAKKMRELDPQNSAVYVMLSNLYAA----AGMWRDVTRVRLLMKEQG  537 (597)
Q Consensus       466 ~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~  537 (597)
                      +.. +.+...+..|...|..    ..+.++|...++++.+.  .++.....|+.+|..    ..+.++|..+++...+.|
T Consensus       312 ~Aa-~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g  388 (452)
T 3e4b_A          312 KAV-GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARN--GQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQD  388 (452)
T ss_dssp             TTT-TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT--TCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTC
T ss_pred             HHh-CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh--ChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCC
Confidence            988 6678888888887766    44999999999999875  457788999999986    458999999999998877


Q ss_pred             C
Q 007573          538 V  538 (597)
Q Consensus       538 ~  538 (597)
                      .
T Consensus       389 ~  389 (452)
T 3e4b_A          389 T  389 (452)
T ss_dssp             C
T ss_pred             C
Confidence            4

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.57  E-value=2.8e-13  Score=123.03  Aligned_cols=198  Identities=11%  Similarity=-0.033  Sum_probs=156.2

Q ss_pred             cccHHHHHHHHHHhcCCHHHHHHHHhccC---CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHH
Q 007573          338 NVSVCNAVITMYSRCGGILDSELAFRQIH---SPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSA  414 (597)
Q Consensus       338 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~  414 (597)
                      +..++..+...+...|++++|...++.+.   +.+...|..+...+...|++++|.+.++++.+.. +.+..++..+...
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~   85 (225)
T 2vq2_A            7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWF   85 (225)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence            34556667777777788888887777654   4456778888888888888888888888887653 3456777888888


Q ss_pred             Hhcc-CcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHH
Q 007573          415 CGHA-GKVNESMDLFELMVKVYGIIPS-SEHYTCLVDILSRAGQLEKAWQITQGMP-FEA-DTGVWGSLLAACVINLNVE  490 (597)
Q Consensus       415 ~~~~-g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~  490 (597)
                      +... |++++|...++.+.+ .+..|+ ...+..++..+...|++++|.+.++++. ..| +...+..++..+...|+++
T Consensus        86 ~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~  164 (225)
T 2vq2_A           86 LCGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLG  164 (225)
T ss_dssp             HHTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHH
T ss_pred             HHHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHH
Confidence            8888 899999998888876 234444 6677888888888999999988888765 333 5778888888888999999


Q ss_pred             HHHHHHHHHHhcCC-CCCchHHHHHHHHHhcCCcHHHHHHHHHHHhCC
Q 007573          491 LGELAAKKMRELDP-QNSAVYVMLSNLYAAAGMWRDVTRVRLLMKEQG  537 (597)
Q Consensus       491 ~a~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  537 (597)
                      +|...++++++..| .++..+..++..+...|+.++|..+++.+.+..
T Consensus       165 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~  212 (225)
T 2vq2_A          165 DADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANF  212 (225)
T ss_dssp             HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC
Confidence            99999999999888 888888888888889999999998888887543

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.56  E-value=7.4e-14  Score=128.65  Aligned_cols=197  Identities=13%  Similarity=0.064  Sum_probs=149.8

Q ss_pred             cccHHHHHHHHHHhcCCHHHHHHHHhccC---CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHH
Q 007573          338 NVSVCNAVITMYSRCGGILDSELAFRQIH---SPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSA  414 (597)
Q Consensus       338 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~  414 (597)
                      ....+..+...+...|++++|...|+++.   +.+...+..+...+...|++++|++.++++.+.. +.+..++..+...
T Consensus        22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~  100 (243)
T 2q7f_A           22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNV  100 (243)
T ss_dssp             --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHH
Confidence            45566677777888888888888887764   4567788888888999999999999999988753 3457778888888


Q ss_pred             HhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHhcCCHHHH
Q 007573          415 CGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMP--FEADTGVWGSLLAACVINLNVELG  492 (597)
Q Consensus       415 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a  492 (597)
                      +...|++++|.+.++++.+.  .+.+...+..++..+.+.|++++|.+.++++.  .+.+...+..++..+...|++++|
T Consensus       101 ~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A  178 (243)
T 2q7f_A          101 YVVKEMYKEAKDMFEKALRA--GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEA  178 (243)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH--TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred             HHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHH
Confidence            99999999999999998874  23457788888999999999999999998865  344677888889999999999999


Q ss_pred             HHHHHHHHhcCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHhCC
Q 007573          493 ELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRVRLLMKEQG  537 (597)
Q Consensus       493 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  537 (597)
                      +..++++++..|+++.++..++.+|...|++++|.+.++++.+..
T Consensus       179 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~  223 (243)
T 2q7f_A          179 LSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ  223 (243)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence            999999999999998899999999999999999999999987754

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.55  E-value=2.1e-12  Score=121.39  Aligned_cols=226  Identities=11%  Similarity=-0.028  Sum_probs=155.6

Q ss_pred             CChhHHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhc----cchhHHHHHHHHHHHHhCCCCcccHH
Q 007573          267 KDCVSFNAMIAGYAQNGVAEEALRLFSGMIKMDMQPDDATLVSVFTACSA----LQLLNEGRQSHVLVIRNGFEANVSVC  342 (597)
Q Consensus       267 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~  342 (597)
                      .++.++..+...+...|++++|+..|++..+.+   +...+..+...+..    .++.++|...++...+.+        
T Consensus         4 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--------   72 (273)
T 1ouv_A            4 QDPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--------   72 (273)
T ss_dssp             -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--------
T ss_pred             CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--------
Confidence            356677778888888888888888888777622   22333334444444    444445544444444332        


Q ss_pred             HHHHHHHHhcCCHHHHHHHHhccCCCChhhHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhc-
Q 007573          343 NAVITMYSRCGGILDSELAFRQIHSPNLVSWNTIIAAFAQ----HGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGH-  417 (597)
Q Consensus       343 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~-  417 (597)
                                                +...+..+...|..    .+++++|++.|++..+.+   +...+..+...+.. 
T Consensus        73 --------------------------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~  123 (273)
T 1ouv_A           73 --------------------------YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDG  123 (273)
T ss_dssp             --------------------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHC
T ss_pred             --------------------------CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcC
Confidence                                      44555666666666    777777777777777654   55666667777776 


Q ss_pred             ---cCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhh----cCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHh----c
Q 007573          418 ---AGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSR----AGQLEKAWQITQGMPFEADTGVWGSLLAACVI----N  486 (597)
Q Consensus       418 ---~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~  486 (597)
                         .+++++|.+.|++..+. +   +...+..+...|..    .+++++|.+.+++.....+...+..+...+..    .
T Consensus       124 ~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~  199 (273)
T 1ouv_A          124 KVVTRDFKKAVEYFTKACDL-N---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGAT  199 (273)
T ss_dssp             SSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSC
T ss_pred             CCcccCHHHHHHHHHHHHhc-C---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCC
Confidence               77778888777777663 2   45566667777776    77888888887765533456677777778877    8


Q ss_pred             CCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHh----cCCcHHHHHHHHHHHhCCC
Q 007573          487 LNVELGELAAKKMRELDPQNSAVYVMLSNLYAA----AGMWRDVTRVRLLMKEQGV  538 (597)
Q Consensus       487 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~  538 (597)
                      +++++|+..++++.+.+|  +..+..++.+|..    .+++++|.+.+++..+.|.
T Consensus       200 ~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~  253 (273)
T 1ouv_A          200 KNFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA  253 (273)
T ss_dssp             CCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred             ccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCC
Confidence            888888888888888765  6677888888888    8888888888888877663

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.54  E-value=5e-13  Score=130.79  Aligned_cols=244  Identities=12%  Similarity=0.104  Sum_probs=175.6

Q ss_pred             hHHHHHHHHHHHcCChhHHHHHHHHhHHCCCCC-CHHHHHHHHHHHhccch-hHHHHHHHHHHHHhCCCCcccHHHHHHH
Q 007573          270 VSFNAMIAGYAQNGVAEEALRLFSGMIKMDMQP-DDATLVSVFTACSALQL-LNEGRQSHVLVIRNGFEANVSVCNAVIT  347 (597)
Q Consensus       270 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~  347 (597)
                      ..|+.+...+...|++++|+..+++.++.  .| +...|..+..++...|+ +++|...++.+++.. +.+..+|+.+..
T Consensus        98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l--~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~  174 (382)
T 2h6f_A           98 DVYDYFRAVLQRDERSERAFKLTRDAIEL--NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV  174 (382)
T ss_dssp             HHHHHHHHHHHHTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCChHHHHHHHHHHHHh--CccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
Confidence            35555666666666666666666666653  33 33444555555555664 666666666666654 445667777777


Q ss_pred             HHHhcCCHHHHHHHHhccC---CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhc-cCcHHH
Q 007573          348 MYSRCGGILDSELAFRQIH---SPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGH-AGKVNE  423 (597)
Q Consensus       348 ~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~-~g~~~~  423 (597)
                      ++.+.|++++|+..|+++.   +.+...|..+..++...|++++|+..++++++.. +-+...|+.+..++.. .|..++
T Consensus       175 ~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~e  253 (382)
T 2h6f_A          175 LVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDR  253 (382)
T ss_dssp             HHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSH
T ss_pred             HHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcchH
Confidence            8888888888888888776   5677788888888889999999999999988753 3356778888888877 566566


Q ss_pred             H-----HHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcC--CHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhcC-------
Q 007573          424 S-----MDLFELMVKVYGIIPS-SEHYTCLVDILSRAG--QLEKAWQITQGMPFEA-DTGVWGSLLAACVINL-------  487 (597)
Q Consensus       424 a-----~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~p-~~~~~~~l~~~~~~~g-------  487 (597)
                      |     .+.++++++.   .|+ ...|..+..+|...|  ++++|.+.+.++...| +...+..++..+...|       
T Consensus       254 A~~~~el~~~~~Al~l---~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~~  330 (382)
T 2h6f_A          254 AVLEREVQYTLEMIKL---VPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNK  330 (382)
T ss_dssp             HHHHHHHHHHHHHHHH---STTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSH
T ss_pred             HHHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccccch
Confidence            6     4777777753   344 678888888888888  6888888887775444 4567888888887764       


Q ss_pred             -C-HHHHHHHHHHH-HhcCCCCCchHHHHHHHHHhc
Q 007573          488 -N-VELGELAAKKM-RELDPQNSAVYVMLSNLYAAA  520 (597)
Q Consensus       488 -~-~~~a~~~~~~~-~~~~p~~~~~~~~l~~~~~~~  520 (597)
                       + .++|+.+++++ .+++|.....|..++..+..+
T Consensus       331 ~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~  366 (382)
T 2h6f_A          331 EDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSK  366 (382)
T ss_dssp             HHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence             2 58999999999 899999888888777766543

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.54  E-value=1.1e-13  Score=127.43  Aligned_cols=213  Identities=12%  Similarity=0.051  Sum_probs=143.4

Q ss_pred             ChhHHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhccchhHHHHHHHHHHHHhCCCCcccHHHHHHH
Q 007573          268 DCVSFNAMIAGYAQNGVAEEALRLFSGMIKMDMQPDDATLVSVFTACSALQLLNEGRQSHVLVIRNGFEANVSVCNAVIT  347 (597)
Q Consensus       268 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  347 (597)
                      ....|..+...+...|++++|+..|+++.+..  |                                  .+...+..+..
T Consensus        22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--~----------------------------------~~~~~~~~la~   65 (243)
T 2q7f_A           22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN--K----------------------------------EDAIPYINFAN   65 (243)
T ss_dssp             --------------------CCTTHHHHHTTC--T----------------------------------TCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC--c----------------------------------ccHHHHHHHHH
Confidence            33466667777777777777777777776532  2                                  22333444455


Q ss_pred             HHHhcCCHHHHHHHHhccC---CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHH
Q 007573          348 MYSRCGGILDSELAFRQIH---SPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNES  424 (597)
Q Consensus       348 ~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a  424 (597)
                      .|...|++++|...++++.   +.+...+..+...+...|++++|++.++++.+.. +.+...+..+...+...|++++|
T Consensus        66 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A  144 (243)
T 2q7f_A           66 LLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLA  144 (243)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHH
Confidence            5555555555555555443   3456677778888888889999999888887753 44567788888888899999999


Q ss_pred             HHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 007573          425 MDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMP--FEADTGVWGSLLAACVINLNVELGELAAKKMREL  502 (597)
Q Consensus       425 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  502 (597)
                      ...++++.+.  .+.+...+..++..+.+.|++++|.+.++++.  .+.+..++..+...+...|++++|...++++++.
T Consensus       145 ~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~  222 (243)
T 2q7f_A          145 LPYLQRAVEL--NENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDI  222 (243)
T ss_dssp             HHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHh--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence            9999988764  23457788889999999999999999998765  3445778999999999999999999999999999


Q ss_pred             CCCCCchHHHHHHHHHh
Q 007573          503 DPQNSAVYVMLSNLYAA  519 (597)
Q Consensus       503 ~p~~~~~~~~l~~~~~~  519 (597)
                      +|+++.++..+..+...
T Consensus       223 ~p~~~~~~~~~~~l~~~  239 (243)
T 2q7f_A          223 QPDHMLALHAKKLLGHH  239 (243)
T ss_dssp             CTTCHHHHHHHTC----
T ss_pred             CcchHHHHHHHHHHHhh
Confidence            99998877766655443

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.54  E-value=1.1e-12  Score=123.19  Aligned_cols=241  Identities=12%  Similarity=0.052  Sum_probs=165.0

Q ss_pred             chHHHHHHHHHcCCChHHHHHHHhhcCCCCCC-chHHHHHHHHHHhcCCHHHHHHHHhhcCC--CCh----hHHHHHHHH
Q 007573          206 VSWTVMITGYVKNERFCEARELFYRMPDYDKN-VFVVTAMITGFCKVGMLENARLLFERIQP--KDC----VSFNAMIAG  278 (597)
Q Consensus       206 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~----~~~~~li~~  278 (597)
                      ..+......+...|++++|...++.+.+..|+ ..++..+...|.+.|++++|...+++...  .+.    .+|..+...
T Consensus         4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~   83 (272)
T 3u4t_A            4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI   83 (272)
T ss_dssp             -CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence            34455666777778888888888777776654 34777777788888888888888776543  222    247888888


Q ss_pred             HHHcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhccchhHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHH
Q 007573          279 YAQNGVAEEALRLFSGMIKMDMQPDDATLVSVFTACSALQLLNEGRQSHVLVIRNGFEANVSVCNAVITMYSRCGGILDS  358 (597)
Q Consensus       279 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A  358 (597)
                      +...|++++|+..|++..+..  |+..                                  .++..+...|...|++++|
T Consensus        84 ~~~~~~~~~A~~~~~~a~~~~--~~~~----------------------------------~~~~~l~~~~~~~~~~~~A  127 (272)
T 3u4t_A           84 LMKKGQDSLAIQQYQAAVDRD--TTRL----------------------------------DMYGQIGSYFYNKGNFPLA  127 (272)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHS--TTCT----------------------------------HHHHHHHHHHHHTTCHHHH
T ss_pred             HHHcccHHHHHHHHHHHHhcC--cccH----------------------------------HHHHHHHHHHHHccCHHHH
Confidence            888999999999988887742  3211                                  1234455667777778888


Q ss_pred             HHHHhccC---CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCc---HHHHHHHHHHhH
Q 007573          359 ELAFRQIH---SPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGK---VNESMDLFELMV  432 (597)
Q Consensus       359 ~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~---~~~a~~~~~~~~  432 (597)
                      ...+++..   +.+...|..+...+...+++++|++.|+++.+.. +.+...+..+..++...|+   .++|...++++.
T Consensus       128 ~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~  206 (272)
T 3u4t_A          128 IQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLI  206 (272)
T ss_dssp             HHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHH
T ss_pred             HHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHH
Confidence            88777766   3455667666634444568999999998888752 3335667777777777777   777888888877


Q ss_pred             HhcCCCCCh------HHHHHHHHHHhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHH
Q 007573          433 KVYGIIPSS------EHYTCLVDILSRAGQLEKAWQITQGMP-FEA-DTGVWGSLLAAC  483 (597)
Q Consensus       433 ~~~~~~p~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~  483 (597)
                      +...-.|+.      ..|..+...|...|++++|.+.+++.. ..| +...+..+....
T Consensus       207 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~  265 (272)
T 3u4t_A          207 EVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKL  265 (272)
T ss_dssp             HHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC---
T ss_pred             HHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhh
Confidence            654333442      577788888999999999999998875 445 444555544443

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.54  E-value=9.5e-13  Score=121.99  Aligned_cols=205  Identities=13%  Similarity=0.087  Sum_probs=154.5

Q ss_pred             hhHHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhccchhHHHHHHHHHHHHhCCCCcccHHHHHHHH
Q 007573          269 CVSFNAMIAGYAQNGVAEEALRLFSGMIKMDMQPDDATLVSVFTACSALQLLNEGRQSHVLVIRNGFEANVSVCNAVITM  348 (597)
Q Consensus       269 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  348 (597)
                      ...|..+...+...|++++|+..|+++.+.. +.+.                                   ..+..+...
T Consensus        37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~-----------------------------------~~~~~la~~   80 (252)
T 2ho1_A           37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSA-----------------------------------DAHAALAVV   80 (252)
T ss_dssp             HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCH-----------------------------------HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChH-----------------------------------HHHHHHHHH
Confidence            4567777788888888888888888777642 1123                                   334444555


Q ss_pred             HHhcCCHHHHHHHHhccC---CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHhccCcHHHH
Q 007573          349 YSRCGGILDSELAFRQIH---SPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPD-GITFLSLLSACGHAGKVNES  424 (597)
Q Consensus       349 ~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a  424 (597)
                      |...|++++|...++++.   +.+...|..+...+...|++++|+++++++.+.+..|+ ...+..+...+...|++++|
T Consensus        81 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  160 (252)
T 2ho1_A           81 FQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQA  160 (252)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHH
Confidence            555556666655555443   34566777788888889999999999998877334554 56777788888899999999


Q ss_pred             HHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 007573          425 MDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMP--FEADTGVWGSLLAACVINLNVELGELAAKKMREL  502 (597)
Q Consensus       425 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  502 (597)
                      .+.++++.+..  +.+...+..++..|...|++++|.+.++++.  .+.+...+..+...+...|+.++|...++++++.
T Consensus       161 ~~~~~~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~  238 (252)
T 2ho1_A          161 KEYFEKSLRLN--RNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL  238 (252)
T ss_dssp             HHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            99999887642  3347788889999999999999999998865  3345678888888899999999999999999999


Q ss_pred             CCCCCchHH
Q 007573          503 DPQNSAVYV  511 (597)
Q Consensus       503 ~p~~~~~~~  511 (597)
                      .|+++....
T Consensus       239 ~p~~~~~~~  247 (252)
T 2ho1_A          239 YPGSLEYQE  247 (252)
T ss_dssp             CTTSHHHHH
T ss_pred             CCCCHHHHH
Confidence            999876543

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.53  E-value=8.3e-13  Score=115.86  Aligned_cols=166  Identities=14%  Similarity=0.057  Sum_probs=139.7

Q ss_pred             ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHH
Q 007573          369 NLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLV  448 (597)
Q Consensus       369 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~  448 (597)
                      +...|..+...|...|++++|++.|++..+.. +-+..++..+..++.+.|++++|...+......  .+.+...+..+.
T Consensus         4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~   80 (184)
T 3vtx_A            4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYILG   80 (184)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHHH
Confidence            55678888888888999999999998888753 334667888888888999999999998888764  233466777788


Q ss_pred             HHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcHHH
Q 007573          449 DILSRAGQLEKAWQITQGMP--FEADTGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRDV  526 (597)
Q Consensus       449 ~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A  526 (597)
                      ..+...++++.|.+.+.+..  .+.+...+..++..+...|++++|+..++++++.+|.++.++..++.+|.+.|++++|
T Consensus        81 ~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A  160 (184)
T 3vtx_A           81 SANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA  160 (184)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence            88889999999999888765  3345778889999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhCC
Q 007573          527 TRVRLLMKEQG  537 (597)
Q Consensus       527 ~~~~~~~~~~~  537 (597)
                      ++.+++..+..
T Consensus       161 ~~~~~~al~~~  171 (184)
T 3vtx_A          161 VKYFKKALEKE  171 (184)
T ss_dssp             HHHHHHHHHTT
T ss_pred             HHHHHHHHhCC
Confidence            99999988754

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.53  E-value=6.1e-13  Score=120.08  Aligned_cols=63  Identities=16%  Similarity=0.095  Sum_probs=36.4

Q ss_pred             CCchHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChhHHHHHHHHhHHC
Q 007573          236 KNVFVVTAMITGFCKVGMLENARLLFERIQP---KDCVSFNAMIAGYAQNGVAEEALRLFSGMIKM  298 (597)
Q Consensus       236 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  298 (597)
                      ++...+..+...+.+.|++++|...|++..+   .+...|..+...+.+.|++++|+..|++..+.
T Consensus         3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~   68 (217)
T 2pl2_A            3 TAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVAR   68 (217)
T ss_dssp             -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            3445555566666666666666666665432   34455666666666666666666666665553

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.53  E-value=2.9e-12  Score=120.36  Aligned_cols=226  Identities=12%  Similarity=0.005  Sum_probs=173.0

Q ss_pred             CchHHHHHHHHHHhcCCHHHHHHHHhhcCC-CChhHHHHHHHHHHH----cCChhHHHHHHHHhHHCCCCCCHHHHHHHH
Q 007573          237 NVFVVTAMITGFCKVGMLENARLLFERIQP-KDCVSFNAMIAGYAQ----NGVAEEALRLFSGMIKMDMQPDDATLVSVF  311 (597)
Q Consensus       237 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll  311 (597)
                      +..++..+...|...|++++|...|++..+ .+..++..+...|..    .+++++|+..|++..+.+   +...+..+.
T Consensus         5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg   81 (273)
T 1ouv_A            5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLG   81 (273)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred             ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHH
Confidence            456778889999999999999999988665 466789999999999    999999999999999875   555555555


Q ss_pred             HHHhc----cchhHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHhccCCCChhhHHHHHHHHHH----c
Q 007573          312 TACSA----LQLLNEGRQSHVLVIRNGFEANVSVCNAVITMYSRCGGILDSELAFRQIHSPNLVSWNTIIAAFAQ----H  383 (597)
Q Consensus       312 ~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~----~  383 (597)
                      ..+..    .++.++|...++...+.+                                  +..++..+...|..    .
T Consensus        82 ~~~~~g~~~~~~~~~A~~~~~~a~~~~----------------------------------~~~a~~~lg~~~~~~~~~~  127 (273)
T 1ouv_A           82 NLYYSGQGVSQNTNKALQYYSKACDLK----------------------------------YAEGCASLGGIYHDGKVVT  127 (273)
T ss_dssp             HHHHHTSSSCCCHHHHHHHHHHHHHTT----------------------------------CHHHHHHHHHHHHHCSSSC
T ss_pred             HHHhCCCCcccCHHHHHHHHHHHHHcC----------------------------------CccHHHHHHHHHHcCCCcc
Confidence            55555    666666666666555433                                  44455556666666    7


Q ss_pred             CCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhc----cCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhh----cC
Q 007573          384 GHYEKALIFFSQMGLNGFDPDGITFLSLLSACGH----AGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSR----AG  455 (597)
Q Consensus       384 g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g  455 (597)
                      +++++|++.|++..+.+   +...+..+...+..    .+++++|...|++..+. +   +...+..+..+|..    .+
T Consensus       128 ~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~g~~~~~  200 (273)
T 1ouv_A          128 RDFKKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL-K---DSPGCFNAGNMYHHGEGATK  200 (273)
T ss_dssp             CCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTCSSCC
T ss_pred             cCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHHcCCCCCc
Confidence            78888888888877755   45566666677766    78888888888887764 2   45677778888888    88


Q ss_pred             CHHHHHHHHhhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCC
Q 007573          456 QLEKAWQITQGMPFEADTGVWGSLLAACVI----NLNVELGELAAKKMRELDPQN  506 (597)
Q Consensus       456 ~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p~~  506 (597)
                      ++++|.+.+++.....+...+..+...+..    .+++++|+..++++.+.+|++
T Consensus       201 ~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~  255 (273)
T 1ouv_A          201 NFKEALARYSKACELENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKG  255 (273)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHH
T ss_pred             cHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHH
Confidence            999999888876522346777888888888    899999999999999998864

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.52  E-value=2.3e-12  Score=116.85  Aligned_cols=208  Identities=13%  Similarity=0.004  Sum_probs=154.4

Q ss_pred             ChhHHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhccchhHHHHHHHHHHHHhCCCCcccHHHHHHH
Q 007573          268 DCVSFNAMIAGYAQNGVAEEALRLFSGMIKMDMQPDDATLVSVFTACSALQLLNEGRQSHVLVIRNGFEANVSVCNAVIT  347 (597)
Q Consensus       268 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  347 (597)
                      +...|..+...+...|++++|+..|+++.+..  |                                  .+...+..+..
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~----------------------------------~~~~~~~~l~~   50 (225)
T 2vq2_A            7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD--P----------------------------------KNELAWLVRAE   50 (225)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T----------------------------------TCHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC--c----------------------------------cchHHHHHHHH
Confidence            44567777777777777777777777766542  2                                  22334444555


Q ss_pred             HHHhcCCHHHHHHHHhccC---CCChhhHHHHHHHHHHc-CCHHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHhccCcHH
Q 007573          348 MYSRCGGILDSELAFRQIH---SPNLVSWNTIIAAFAQH-GHYEKALIFFSQMGLNGFDPD-GITFLSLLSACGHAGKVN  422 (597)
Q Consensus       348 ~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~  422 (597)
                      .|...|++++|...++++.   +.+..++..+...+... |++++|+..++++.+.+..|+ ...+..+..++...|+++
T Consensus        51 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  130 (225)
T 2vq2_A           51 IYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFG  130 (225)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHH
Confidence            5555666666666665543   34566777888888888 999999999999887333444 567788888889999999


Q ss_pred             HHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC--CC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007573          423 ESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMP--FE-ADTGVWGSLLAACVINLNVELGELAAKKM  499 (597)
Q Consensus       423 ~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~  499 (597)
                      +|...++.+.+.  .+.+...+..++..+.+.|++++|.+.++++.  .+ .+...+..+...+...|+.+.|..+++.+
T Consensus       131 ~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~  208 (225)
T 2vq2_A          131 LAEAYLKRSLAA--QPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQL  208 (225)
T ss_dssp             HHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh--CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence            999999988764  23347788889999999999999999998865  33 45667777777889999999999999999


Q ss_pred             HhcCCCCCchHHHH
Q 007573          500 RELDPQNSAVYVML  513 (597)
Q Consensus       500 ~~~~p~~~~~~~~l  513 (597)
                      .+..|+++.....+
T Consensus       209 ~~~~p~~~~~~~~l  222 (225)
T 2vq2_A          209 QANFPYSEELQTVL  222 (225)
T ss_dssp             HHHCTTCHHHHHHH
T ss_pred             HHhCCCCHHHHHHh
Confidence            99999987765443

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.51  E-value=1.7e-13  Score=137.32  Aligned_cols=197  Identities=10%  Similarity=0.013  Sum_probs=139.9

Q ss_pred             cHHHHHHHHHHhcCCHHHHHHHHhccCC---------CChhhHHHHHHHHHHcCC-----------------HHHHHHHH
Q 007573          340 SVCNAVITMYSRCGGILDSELAFRQIHS---------PNLVSWNTIIAAFAQHGH-----------------YEKALIFF  393 (597)
Q Consensus       340 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~---------~~~~~~~~li~~~~~~g~-----------------~~~A~~~~  393 (597)
                      .++..+...|...|++++|...+++...         ....++..+...|...|+                 +++|++.+
T Consensus       127 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~  206 (411)
T 4a1s_A          127 KSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFY  206 (411)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHH
Confidence            3455566666666666666666655431         123366667777777788                 78888777


Q ss_pred             HHHHHC----CCCC-ChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC----hHHHHHHHHHHhhcCCHHHHHHHH
Q 007573          394 SQMGLN----GFDP-DGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPS----SEHYTCLVDILSRAGQLEKAWQIT  464 (597)
Q Consensus       394 ~~m~~~----g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~  464 (597)
                      ++..+.    +-.+ ...++..+...+...|++++|...+++..+...-.++    ...+..+...|...|++++|.+.+
T Consensus       207 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  286 (411)
T 4a1s_A          207 QENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHY  286 (411)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence            775432    1111 1346777778888889999999888887654221122    236778888899999999999988


Q ss_pred             hhCC-C---CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC------CchHHHHHHHHHhcCCcHHHHHHH
Q 007573          465 QGMP-F---EAD----TGVWGSLLAACVINLNVELGELAAKKMRELDPQN------SAVYVMLSNLYAAAGMWRDVTRVR  530 (597)
Q Consensus       465 ~~~~-~---~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~  530 (597)
                      ++.. .   ..+    ..++..+...+...|++++|...++++++..+..      ..++..++.+|...|++++|.+.+
T Consensus       287 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  366 (411)
T 4a1s_A          287 KRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYA  366 (411)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence            7754 1   111    4577888888999999999999999998875432      457888999999999999999999


Q ss_pred             HHHHhC
Q 007573          531 LLMKEQ  536 (597)
Q Consensus       531 ~~~~~~  536 (597)
                      ++..+.
T Consensus       367 ~~al~~  372 (411)
T 4a1s_A          367 EQHLQL  372 (411)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998763

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.50  E-value=4.8e-13  Score=133.54  Aligned_cols=267  Identities=14%  Similarity=0.055  Sum_probs=142.6

Q ss_pred             hHHHHHHHHHHhcCCHHHHHHHHhhcCC---CC----hhHHHHHHHHHHHcCChhHHHHHHHHhHHC----CCCCC-HHH
Q 007573          239 FVVTAMITGFCKVGMLENARLLFERIQP---KD----CVSFNAMIAGYAQNGVAEEALRLFSGMIKM----DMQPD-DAT  306 (597)
Q Consensus       239 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~~  306 (597)
                      ..+......+.+.|++++|...|++...   .+    ..+|..+...+...|++++|+..+++....    +..|. ...
T Consensus        10 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~   89 (406)
T 3sf4_A           10 LELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA   89 (406)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence            3445556666677777777777765432   22    235666666677777777777776665432    11111 122


Q ss_pred             HHHHHHHHhccchhHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHhccCCCC----hhhHHHHHHHHHH
Q 007573          307 LVSVFTACSALQLLNEGRQSHVLVIRNGFEANVSVCNAVITMYSRCGGILDSELAFRQIHSPN----LVSWNTIIAAFAQ  382 (597)
Q Consensus       307 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~li~~~~~  382 (597)
                      +..+...+...|++++|...+..+.+....                              .++    ..++..+...|..
T Consensus        90 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~------------------------------~~~~~~~~~~~~~l~~~~~~  139 (406)
T 3sf4_A           90 SGNLGNTLKVLGNFDEAIVCCQRHLDISRE------------------------------LNDKVGEARALYNLGNVYHA  139 (406)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHH------------------------------HTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHh------------------------------cccccchHHHHHHHHHHHHH
Confidence            333333444444444444444443322100                              011    2245555555555


Q ss_pred             cCC--------------------HHHHHHHHHHHHHC----CCCCC-hHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCC
Q 007573          383 HGH--------------------YEKALIFFSQMGLN----GFDPD-GITFLSLLSACGHAGKVNESMDLFELMVKVYGI  437 (597)
Q Consensus       383 ~g~--------------------~~~A~~~~~~m~~~----g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~  437 (597)
                      .|+                    +++|++.+.+....    +..|. ..++..+...+...|++++|...+++..+...-
T Consensus       140 ~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  219 (406)
T 3sf4_A          140 KGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKE  219 (406)
T ss_dssp             HHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHH
T ss_pred             cCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHh
Confidence            565                    66666665554321    11111 234555556666666666666666665543211


Q ss_pred             CCC----hHHHHHHHHHHhhcCCHHHHHHHHhhCC----CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 007573          438 IPS----SEHYTCLVDILSRAGQLEKAWQITQGMP----FEAD----TGVWGSLLAACVINLNVELGELAAKKMRELDPQ  505 (597)
Q Consensus       438 ~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~  505 (597)
                      .++    ...+..+...|...|++++|...+++..    ..++    ..++..+...+...|++++|...++++++..+.
T Consensus       220 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  299 (406)
T 3sf4_A          220 FGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE  299 (406)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             cCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHh
Confidence            122    2255666666667777777766665543    1111    335566666666777777777777776665332


Q ss_pred             C------CchHHHHHHHHHhcCCcHHHHHHHHHHHh
Q 007573          506 N------SAVYVMLSNLYAAAGMWRDVTRVRLLMKE  535 (597)
Q Consensus       506 ~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  535 (597)
                      .      ..++..++.+|...|++++|.+.+++..+
T Consensus       300 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  335 (406)
T 3sf4_A          300 LNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE  335 (406)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             cCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            2      34566667777777777777777666554

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.50  E-value=1.4e-12  Score=127.59  Aligned_cols=226  Identities=10%  Similarity=0.020  Sum_probs=192.0

Q ss_pred             HHHHHHHHHHhccchhHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCC-HHHHHHHHhccC---CCChhhHHHHHHHH
Q 007573          305 ATLVSVFTACSALQLLNEGRQSHVLVIRNGFEANVSVCNAVITMYSRCGG-ILDSELAFRQIH---SPNLVSWNTIIAAF  380 (597)
Q Consensus       305 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~---~~~~~~~~~li~~~  380 (597)
                      ..+..+...+...|+.++|...+..+++.. +.+..+|+.+..++...|+ +++|+..|+++.   +.+...|+.+...+
T Consensus        98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~  176 (382)
T 2h6f_A           98 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLV  176 (382)
T ss_dssp             HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence            345566677788899999999999999886 5677889999999999997 999999999887   56778999999999


Q ss_pred             HHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhh-cCCHHH
Q 007573          381 AQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSR-AGQLEK  459 (597)
Q Consensus       381 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~g~~~~  459 (597)
                      ...|++++|+..|+++++.. +-+...|..+..++...|++++|+..++++++.  -+-+...|+.+..+|.+ .|..++
T Consensus       177 ~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l--~P~~~~a~~~lg~~l~~l~~~~~e  253 (382)
T 2h6f_A          177 EWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGYNDR  253 (382)
T ss_dssp             HHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSCSH
T ss_pred             HHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCcchH
Confidence            99999999999999999863 345778999999999999999999999999874  22357889999999999 666577


Q ss_pred             H-----HHHHhhCC-CCC-CHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcC---------
Q 007573          460 A-----WQITQGMP-FEA-DTGVWGSLLAACVINL--NVELGELAAKKMRELDPQNSAVYVMLSNLYAAAG---------  521 (597)
Q Consensus       460 A-----~~~~~~~~-~~p-~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g---------  521 (597)
                      |     ++.+++.. ..| +...|..+...+...|  ++++|+..+.++ +.+|+++.++..++++|.+.|         
T Consensus       254 A~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~~  332 (382)
T 2h6f_A          254 AVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKED  332 (382)
T ss_dssp             HHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchHH
Confidence            7     47777654 455 5678999999998888  689999999998 889999999999999999975         


Q ss_pred             CcHHHHHHHHHH-Hh
Q 007573          522 MWRDVTRVRLLM-KE  535 (597)
Q Consensus       522 ~~~~A~~~~~~~-~~  535 (597)
                      .+++|+++++++ .+
T Consensus       333 ~~~~A~~~~~~l~~~  347 (382)
T 2h6f_A          333 ILNKALELCEILAKE  347 (382)
T ss_dssp             HHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHH
Confidence            358999999997 44

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.49  E-value=6.5e-13  Score=128.65  Aligned_cols=264  Identities=13%  Similarity=0.059  Sum_probs=172.3

Q ss_pred             HHHHHHHhcCCHHHHHHHHhhcCC---CC----hhHHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHh
Q 007573          243 AMITGFCKVGMLENARLLFERIQP---KD----CVSFNAMIAGYAQNGVAEEALRLFSGMIKMDMQPDDATLVSVFTACS  315 (597)
Q Consensus       243 ~l~~~~~~~g~~~~A~~~~~~~~~---~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~  315 (597)
                      .....+...|++++|...|+++.+   .+    ...+..+...+...|++++|+..+++.....                
T Consensus        10 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~----------------   73 (338)
T 3ro2_A           10 LEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLA----------------   73 (338)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH----------------
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh----------------
Confidence            334455555666666665555321   22    2345555555555666666665555543310                


Q ss_pred             ccchhHHHHHHHHHHHHhCCC-CcccHHHHHHHHHHhcCCHHHHHHHHhccC-----CCC----hhhHHHHHHHHHHcCC
Q 007573          316 ALQLLNEGRQSHVLVIRNGFE-ANVSVCNAVITMYSRCGGILDSELAFRQIH-----SPN----LVSWNTIIAAFAQHGH  385 (597)
Q Consensus       316 ~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~----~~~~~~li~~~~~~g~  385 (597)
                                     .+.+.. ....++..+...|...|++++|...+++..     .++    ..++..+...+...|+
T Consensus        74 ---------------~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~  138 (338)
T 3ro2_A           74 ---------------RTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGK  138 (338)
T ss_dssp             ---------------HHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             ---------------hcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCc
Confidence                           000111 113345556666666677777666666543     122    2366667777777777


Q ss_pred             --------------------HHHHHHHHHHHHHC----CCCCC-hHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC
Q 007573          386 --------------------YEKALIFFSQMGLN----GFDPD-GITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPS  440 (597)
Q Consensus       386 --------------------~~~A~~~~~~m~~~----g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~  440 (597)
                                          +++|.+.+++....    +..|. ..++..+...+...|++++|...+++..+...-.++
T Consensus       139 ~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~  218 (338)
T 3ro2_A          139 SFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD  218 (338)
T ss_dssp             TSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC
T ss_pred             ccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCC
Confidence                                88888887776432    11111 346777778888899999999998887654221122


Q ss_pred             ----hHHHHHHHHHHhhcCCHHHHHHHHhhCC----CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--
Q 007573          441 ----SEHYTCLVDILSRAGQLEKAWQITQGMP----FEAD----TGVWGSLLAACVINLNVELGELAAKKMRELDPQN--  506 (597)
Q Consensus       441 ----~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~--  506 (597)
                          ...+..+...|...|++++|.+.+++..    ..++    ..++..+...+...|++++|...++++++..+..  
T Consensus       219 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~  298 (338)
T 3ro2_A          219 KAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKD  298 (338)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCC
Confidence                3377888899999999999999988754    1122    4577888888999999999999999999875432  


Q ss_pred             ----CchHHHHHHHHHhcCCcHHHHHHHHHHHhCC
Q 007573          507 ----SAVYVMLSNLYAAAGMWRDVTRVRLLMKEQG  537 (597)
Q Consensus       507 ----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  537 (597)
                          ..++..++.+|...|++++|.+.+++..+..
T Consensus       299 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  333 (338)
T 3ro2_A          299 RIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS  333 (338)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC-
T ss_pred             cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence                4478899999999999999999999987643

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.49  E-value=2.8e-13  Score=137.73  Aligned_cols=209  Identities=10%  Similarity=0.024  Sum_probs=175.0

Q ss_pred             hHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCH-HHHHHHHhccC---CCChhhHHHHHHHHHHcCCHHHHHHHHHH
Q 007573          320 LNEGRQSHVLVIRNGFEANVSVCNAVITMYSRCGGI-LDSELAFRQIH---SPNLVSWNTIIAAFAQHGHYEKALIFFSQ  395 (597)
Q Consensus       320 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~  395 (597)
                      ++.+...+....+.. +.+...+..+...|...|++ ++|+..|++..   +.+...|..+...|...|++++|++.|++
T Consensus        84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~  162 (474)
T 4abn_A           84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSG  162 (474)
T ss_dssp             HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            344444444433322 34566777788888888888 88888888765   45678999999999999999999999999


Q ss_pred             HHHCCCCCChHHHHHHHHHHhcc---------CcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhc--------CCHH
Q 007573          396 MGLNGFDPDGITFLSLLSACGHA---------GKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRA--------GQLE  458 (597)
Q Consensus       396 m~~~g~~p~~~~~~~ll~~~~~~---------g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~--------g~~~  458 (597)
                      ..+.  .|+...+..+..++...         |++++|.+.++++.+.  .+.+...|..+..+|...        |+++
T Consensus       163 al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~  238 (474)
T 4abn_A          163 ALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM--DVLDGRSWYILGNAYLSLYFNTGQNPKISQ  238 (474)
T ss_dssp             HHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred             HHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence            9875  57778889999999999         9999999999999874  233478899999999998        9999


Q ss_pred             HHHHHHhhCC-CCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcHHHHHHHHHH
Q 007573          459 KAWQITQGMP-FEA----DTGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRVRLLM  533 (597)
Q Consensus       459 ~A~~~~~~~~-~~p----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  533 (597)
                      +|.+.|++.. ..|    +...|..+..++...|++++|+..++++++++|+++.++..++.++...|++++|.+.++++
T Consensus       239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~  318 (474)
T 4abn_A          239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKT  318 (474)
T ss_dssp             HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            9999999876 455    67899999999999999999999999999999999999999999999999999999765443

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.48  E-value=1.7e-12  Score=121.95  Aligned_cols=218  Identities=11%  Similarity=0.007  Sum_probs=180.4

Q ss_pred             hccchhHHHHHHHHHHHHhCC---CCcccHHHHHHHHHHhcCCHHHHHHHHhccC---CCChhhHHHHHHHHHHcCCHHH
Q 007573          315 SALQLLNEGRQSHVLVIRNGF---EANVSVCNAVITMYSRCGGILDSELAFRQIH---SPNLVSWNTIIAAFAQHGHYEK  388 (597)
Q Consensus       315 ~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~  388 (597)
                      ...|++++|...++.+++...   +.+..++..+...+...|++++|...|+++.   +.+..+|..+...+...|++++
T Consensus        16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~   95 (275)
T 1xnf_A           16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDA   95 (275)
T ss_dssp             CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHH
T ss_pred             CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHH
Confidence            356899999999999988642   2246778899999999999999999999876   5568899999999999999999


Q ss_pred             HHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC
Q 007573          389 ALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMP  468 (597)
Q Consensus       389 A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  468 (597)
                      |++.|+++.+.. +.+..++..+..++...|++++|...++.+.+.   .|+..........+...|++++|...+++..
T Consensus        96 A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~  171 (275)
T 1xnf_A           96 AYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD---DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHF  171 (275)
T ss_dssp             HHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            999999999753 345788999999999999999999999999864   4554444455556678899999999997654


Q ss_pred             --CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC----CchHHHHHHHHHhcCCcHHHHHHHHHHHhCC
Q 007573          469 --FEADTGVWGSLLAACVINLNVELGELAAKKMRELDPQN----SAVYVMLSNLYAAAGMWRDVTRVRLLMKEQG  537 (597)
Q Consensus       469 --~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  537 (597)
                        .+++...+ .++..+...++.++|...++++++..|..    +..+..++.+|...|++++|.+.++++.+..
T Consensus       172 ~~~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  245 (275)
T 1xnf_A          172 EKSDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN  245 (275)
T ss_dssp             HHSCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred             hcCCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence              33444444 46777888889999999999999877643    6788999999999999999999999998754

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.48  E-value=1.2e-12  Score=130.54  Aligned_cols=290  Identities=12%  Similarity=0.011  Sum_probs=187.0

Q ss_pred             hHHHHHHHHHcCCChHHHHHHHhhcCCCCCCc-----hHHHHHHHHHHhcCCHHHHHHHHhhcCC-----C----ChhHH
Q 007573          207 SWTVMITGYVKNERFCEARELFYRMPDYDKNV-----FVVTAMITGFCKVGMLENARLLFERIQP-----K----DCVSF  272 (597)
Q Consensus       207 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~----~~~~~  272 (597)
                      .+......+...|++++|...++.+.+..|+.     .++..+...|...|++++|...+++...     .    ...++
T Consensus        11 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~   90 (406)
T 3sf4_A           11 ELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS   90 (406)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHH
Confidence            34455556666677777777766666644442     3556666777777777777777665421     1    23467


Q ss_pred             HHHHHHHHHcCChhHHHHHHHHhHHCCC-CCC----HHHHHHHHHHHhccch--------------------hHHHHHHH
Q 007573          273 NAMIAGYAQNGVAEEALRLFSGMIKMDM-QPD----DATLVSVFTACSALQL--------------------LNEGRQSH  327 (597)
Q Consensus       273 ~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~~~~~ll~~~~~~~~--------------------~~~a~~~~  327 (597)
                      ..+...|...|++++|+..+++..+... .++    ..++..+...+...|+                    ++.|...+
T Consensus        91 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~  170 (406)
T 3sf4_A           91 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFY  170 (406)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHH
Confidence            7888888889999999988887765310 011    2244455555556666                    55555444


Q ss_pred             HHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHhccCC--CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCC
Q 007573          328 VLVIRNGFEANVSVCNAVITMYSRCGGILDSELAFRQIHS--PNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGF-DPD  404 (597)
Q Consensus       328 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~  404 (597)
                      ....+.                            +.....  ....++..+...+...|++++|+..+++..+... .++
T Consensus       171 ~~al~~----------------------------~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  222 (406)
T 3sf4_A          171 EENLSL----------------------------VTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD  222 (406)
T ss_dssp             HHHHHH----------------------------HHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHH----------------------------HHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCC
Confidence            443321                            111110  1123566667777777888888777777654210 112


Q ss_pred             ----hHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC----hHHHHHHHHHHhhcCCHHHHHHHHhhCC----CCCC
Q 007573          405 ----GITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPS----SEHYTCLVDILSRAGQLEKAWQITQGMP----FEAD  472 (597)
Q Consensus       405 ----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~  472 (597)
                          ..++..+...+...|++++|...+++..+...-.++    ..++..+...|...|++++|.+.+++..    ..++
T Consensus       223 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~  302 (406)
T 3sf4_A          223 KAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELND  302 (406)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCC
Confidence                236677777888888888888888877653211112    4567788888899999999988887754    1122


Q ss_pred             ----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC------CCchHHHHHHHHHhcCCcH
Q 007573          473 ----TGVWGSLLAACVINLNVELGELAAKKMRELDPQ------NSAVYVMLSNLYAAAGMWR  524 (597)
Q Consensus       473 ----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~------~~~~~~~l~~~~~~~g~~~  524 (597)
                          ..++..+...+...|++++|...+++++++.+.      ...++..++.++...|+..
T Consensus       303 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  364 (406)
T 3sf4_A          303 RIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSY  364 (406)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred             cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhH
Confidence                457788888999999999999999999876332      2566788888888888764

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.43  E-value=4.5e-12  Score=111.11  Aligned_cols=167  Identities=11%  Similarity=0.041  Sum_probs=142.7

Q ss_pred             cccHHHHHHHHHHhcCCHHHHHHHHhccC---CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHH
Q 007573          338 NVSVCNAVITMYSRCGGILDSELAFRQIH---SPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSA  414 (597)
Q Consensus       338 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~  414 (597)
                      +..+|..+...|.+.|++++|+..|++..   +.+..+|..+...|...|++++|+..+.+..... +.+...+..+...
T Consensus         4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~   82 (184)
T 3vtx_A            4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSA   82 (184)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHH
Confidence            45678888899999999999999998876   5677889999999999999999999999988753 3446677777788


Q ss_pred             HhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHH
Q 007573          415 CGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMP-FEA-DTGVWGSLLAACVINLNVELG  492 (597)
Q Consensus       415 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a  492 (597)
                      +...++++.+...+....+.  .+.+...+..+...|.+.|++++|++.+++.. ..| +..+|..++.++...|++++|
T Consensus        83 ~~~~~~~~~a~~~~~~a~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A  160 (184)
T 3vtx_A           83 NFMIDEKQAAIDALQRAIAL--NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA  160 (184)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence            88999999999999998764  23457788999999999999999999998876 444 677899999999999999999


Q ss_pred             HHHHHHHHhcCCCCC
Q 007573          493 ELAAKKMRELDPQNS  507 (597)
Q Consensus       493 ~~~~~~~~~~~p~~~  507 (597)
                      +..++++++++|+++
T Consensus       161 ~~~~~~al~~~p~~a  175 (184)
T 3vtx_A          161 VKYFKKALEKEEKKA  175 (184)
T ss_dssp             HHHHHHHHHTTHHHH
T ss_pred             HHHHHHHHhCCccCH
Confidence            999999999999753

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=99.40  E-value=5e-10  Score=117.00  Aligned_cols=419  Identities=10%  Similarity=0.015  Sum_probs=262.3

Q ss_pred             hHHHHHHHhhcCC---CCcchHHHHHHHHHhCCChhHHHHHHhhCCCC---CcchHHHHHHHHHcCCC---hHHHHHHHc
Q 007573           66 ISAARQLFDQMTT---KDVITWNAIITGYWQNGFLQESKNLFQSMPVK---NIVSWNCMIAGCIDNDR---IDDAFDYFQ  136 (597)
Q Consensus        66 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~~~---~~~A~~~~~  136 (597)
                      ..+.+..|++...   .|..+|..++..+.+.+.++.+..+|+++...   ....|...+..-.+.++   ++.+.++|+
T Consensus        48 ~~d~i~~lE~~l~~np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfe  127 (679)
T 4e6h_A           48 ESDVIGKLNDMIEEQPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLA  127 (679)
T ss_dssp             CSCHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHH
Confidence            3444444554433   46668888888888888898899898888743   56678888888778888   888999988


Q ss_pred             cCC--C---CChhhHHHHHHHHHcCCCh--------HHHHHHHccCC------CC-CchhHHHHHHHHHh---------C
Q 007573          137 AMP--E---RNTATYNAMISGFLKHGRL--------EEATRLFEQMP------RR-NVISYTAMLDGFMK---------K  187 (597)
Q Consensus       137 ~~~--~---~~~~~~~~l~~~~~~~g~~--------~~A~~~~~~~~------~~-~~~~~~~li~~~~~---------~  187 (597)
                      +..  .   |++..|...+....+.++.        +...++|+...      .+ +...|...+.....         +
T Consensus       128 Ral~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq  207 (679)
T 4e6h_A          128 RCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQ  207 (679)
T ss_dssp             HHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHH
T ss_pred             HHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHH
Confidence            887  3   7777888777766555443        22335665422      22 33467666665432         2


Q ss_pred             CChhHHHHHHHhccc-CCc---chHHHHHHHHHcCCChHHHHHHHhhcCCCCCCchHHHHHHHHHHhcCCHHHHHHHHhh
Q 007573          188 GEVDKARALSDYMSF-KNV---VSWTVMITGYVKNERFCEARELFYRMPDYDKNVFVVTAMITGFCKVGMLENARLLFER  263 (597)
Q Consensus       188 g~~~~A~~~~~~m~~-~~~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  263 (597)
                      ++.+.+..+|++... |..   .+|......-...+. ..+.+++.+.                   ..+++.|...+..
T Consensus       208 ~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~-~~a~~~~~e~-------------------~~~y~~Ar~~~~e  267 (679)
T 4e6h_A          208 QRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQ-LTARRHIGEL-------------------SAQYMNARSLYQD  267 (679)
T ss_dssp             HHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCT-TTHHHHHHHH-------------------HHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCc-chHHHHHHHh-------------------hHHHHHHHHHHHH
Confidence            345667777777643 211   122111111000000 0011111110                   0112222222211


Q ss_pred             -------cCC---C-------------C------hhHHHHHHHHHHHcC-------ChhHHHHHHHHhHHCCCCCCHHHH
Q 007573          264 -------IQP---K-------------D------CVSFNAMIAGYAQNG-------VAEEALRLFSGMIKMDMQPDDATL  307 (597)
Q Consensus       264 -------~~~---~-------------~------~~~~~~li~~~~~~g-------~~~~A~~~~~~m~~~g~~p~~~~~  307 (597)
                             +..   +             +      ...|...+.---..+       ..+.+..+|++.+.. +.-....|
T Consensus       268 ~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW  346 (679)
T 4e6h_A          268 WLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIW  346 (679)
T ss_dssp             HHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHH
T ss_pred             HHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHH
Confidence                   100   0             0      134555554333322       123455677777664 23355566


Q ss_pred             HHHHHHHhccchhHHHH-HHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHhccCC-------------CC----
Q 007573          308 VSVFTACSALQLLNEGR-QSHVLVIRNGFEANVSVCNAVITMYSRCGGILDSELAFRQIHS-------------PN----  369 (597)
Q Consensus       308 ~~ll~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------------~~----  369 (597)
                      .....-+...|+.+.|. .+++..+... +.+...+-..+....+.|+++.|..+|+.+..             |+    
T Consensus       347 ~~ya~~~~~~~~~~~a~r~il~rAi~~~-P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~  425 (679)
T 4e6h_A          347 FNMANYQGEKNTDSTVITKYLKLGQQCI-PNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESA  425 (679)
T ss_dssp             HHHHHHHHHHSCCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHH
T ss_pred             HHHHHHHHhcCcHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhh
Confidence            66666666677777785 8888887643 55666677788888888889888888887652             21    


Q ss_pred             --------hhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhcc-CcHHHHHHHHHHhHHhcCCCCC
Q 007573          370 --------LVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHA-GKVNESMDLFELMVKVYGIIPS  440 (597)
Q Consensus       370 --------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~-g~~~~a~~~~~~~~~~~~~~p~  440 (597)
                              ...|...+....+.|+.+.|..+|.+..+.-..+....|...+..-.+. ++.+.|..+|+...+.+  +.+
T Consensus       426 ~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~--p~~  503 (679)
T 4e6h_A          426 INQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYF--ATD  503 (679)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHH--TTC
T ss_pred             hhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC--CCc
Confidence                    2368888888888899999999999998761122334444333332333 45899999999998864  345


Q ss_pred             hHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 007573          441 SEHYTCLVDILSRAGQLEKAWQITQGMP-FEA----DTGVWGSLLAACVINLNVELGELAAKKMRELDPQNSA  508 (597)
Q Consensus       441 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~  508 (597)
                      ...+...++.....|+.+.|..+|++.. ..|    ....|...+..-...|+.+.+..+.+++.+..|+++.
T Consensus       504 ~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~~  576 (679)
T 4e6h_A          504 GEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVNK  576 (679)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCCH
T ss_pred             hHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcH
Confidence            6677788888889999999999999876 233    2457888888888999999999999999999998754

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.40  E-value=3e-12  Score=128.14  Aligned_cols=268  Identities=9%  Similarity=-0.012  Sum_probs=165.1

Q ss_pred             HHHHHHHcCCChHHHHHHHhhcCCCCCCc-----hHHHHHHHHHHhcCCHHHHHHHHhhcCC---------CChhHHHHH
Q 007573          210 VMITGYVKNERFCEARELFYRMPDYDKNV-----FVVTAMITGFCKVGMLENARLLFERIQP---------KDCVSFNAM  275 (597)
Q Consensus       210 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~---------~~~~~~~~l  275 (597)
                      .+...+...|++++|...++.+.+..|+.     .++..+...|...|++++|...+++...         ....++..+
T Consensus        53 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l  132 (411)
T 4a1s_A           53 LEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNL  132 (411)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHH
Confidence            34455556666666666666665544432     2455666666666666666666655432         123467777


Q ss_pred             HHHHHHcCChhHHHHHHHHhHHCC----CCC-CHHHHHHHHHHHhccch-----------------hHHHHHHHHHHHHh
Q 007573          276 IAGYAQNGVAEEALRLFSGMIKMD----MQP-DDATLVSVFTACSALQL-----------------LNEGRQSHVLVIRN  333 (597)
Q Consensus       276 i~~~~~~g~~~~A~~~~~~m~~~g----~~p-~~~~~~~ll~~~~~~~~-----------------~~~a~~~~~~~~~~  333 (597)
                      ...|...|++++|+..+++..+..    -.| ...++..+...+...|+                 ++.|...+....+.
T Consensus       133 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~  212 (411)
T 4a1s_A          133 GNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKL  212 (411)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHH
Confidence            777888888888888877765421    011 12234444444555555                 44444443333221


Q ss_pred             CCCCcccHHHHHHHHHHhcCCHHHHHHHHhccCC--CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCC----hH
Q 007573          334 GFEANVSVCNAVITMYSRCGGILDSELAFRQIHS--PNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGF-DPD----GI  406 (597)
Q Consensus       334 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~  406 (597)
                                                  ......  ....++..+...+...|++++|++.+++..+... .++    ..
T Consensus       213 ----------------------------~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  264 (411)
T 4a1s_A          213 ----------------------------MRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERR  264 (411)
T ss_dssp             ----------------------------HHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             ----------------------------HHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHH
Confidence                                        111110  1123566666777777777777777777654210 011    23


Q ss_pred             HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC----hHHHHHHHHHHhhcCCHHHHHHHHhhCC-C---CCC----HH
Q 007573          407 TFLSLLSACGHAGKVNESMDLFELMVKVYGIIPS----SEHYTCLVDILSRAGQLEKAWQITQGMP-F---EAD----TG  474 (597)
Q Consensus       407 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~---~p~----~~  474 (597)
                      ++..+...+...|++++|...+++..+...-..+    ...+..+...|...|++++|.+.+++.. .   .++    ..
T Consensus       265 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  344 (411)
T 4a1s_A          265 ANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEAR  344 (411)
T ss_dssp             HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHH
Confidence            6677778888888888888888877654221111    4677788888999999999988887764 1   111    34


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 007573          475 VWGSLLAACVINLNVELGELAAKKMRELDPQ  505 (597)
Q Consensus       475 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~  505 (597)
                      ++..+...+...|++++|...+++++++.+.
T Consensus       345 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  375 (411)
T 4a1s_A          345 ACWSLGNAHSAIGGHERALKYAEQHLQLAXX  375 (411)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCH
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHHHhh
Confidence            7778888899999999999999999988764

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.39  E-value=6.6e-11  Score=113.14  Aligned_cols=184  Identities=10%  Similarity=0.024  Sum_probs=116.7

Q ss_pred             HHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHhccC--CC-Chh-hHHHHHHHHHHcCCHHHHHHHHHHH
Q 007573          321 NEGRQSHVLVIRNGFEANVSVCNAVITMYSRCGGILDSELAFRQIH--SP-NLV-SWNTIIAAFAQHGHYEKALIFFSQM  396 (597)
Q Consensus       321 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~-~~~-~~~~li~~~~~~g~~~~A~~~~~~m  396 (597)
                      ++|..+++..++.-.+.+...|..++..+.+.|++++|..+|++..  .| +.. .|..++..+.+.|++++|..+|++.
T Consensus        81 ~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a  160 (308)
T 2ond_A           81 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKA  160 (308)
T ss_dssp             HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            5666666666553113344566666667777777777777776654  22 233 6777777777777777777777777


Q ss_pred             HHCCCCCChHHHHHHHHHHh-ccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCCC----CC
Q 007573          397 GLNGFDPDGITFLSLLSACG-HAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMPF----EA  471 (597)
Q Consensus       397 ~~~g~~p~~~~~~~ll~~~~-~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~p  471 (597)
                      .+.. +++...|........ ..|++++|..+|+.+.+..  +-+...|..++..+.+.|+.++|..+|++...    +|
T Consensus       161 ~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p  237 (308)
T 2ond_A          161 REDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPP  237 (308)
T ss_dssp             HTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCG
T ss_pred             HhcC-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCH
Confidence            7643 233444443332221 2577777777777776642  22466677777777777777777777776541    33


Q ss_pred             --CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 007573          472 --DTGVWGSLLAACVINLNVELGELAAKKMRELDPQNS  507 (597)
Q Consensus       472 --~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~  507 (597)
                        ....|..++......|+.+.|..+++++++..|++.
T Consensus       238 ~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~~  275 (308)
T 2ond_A          238 EKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEY  275 (308)
T ss_dssp             GGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTT
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccccc
Confidence              345677777777777777777777777777777654

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.39  E-value=7.3e-12  Score=132.45  Aligned_cols=162  Identities=15%  Similarity=0.187  Sum_probs=142.4

Q ss_pred             ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hHHHHH
Q 007573          369 NLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPD-GITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPS-SEHYTC  446 (597)
Q Consensus       369 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~  446 (597)
                      +..+|+.+...|.+.|++++|++.|++..+.  .|+ ..++..+..++.+.|++++|.+.|+++.+.   .|+ ...|..
T Consensus         8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l--~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l---~P~~~~a~~n   82 (723)
T 4gyw_A            8 HADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI---SPTFADAYSN   82 (723)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHH
Confidence            4567888888999999999999999998875  454 678888999999999999999999998864   454 788999


Q ss_pred             HHHHHhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcH
Q 007573          447 LVDILSRAGQLEKAWQITQGMP-FEA-DTGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGMWR  524 (597)
Q Consensus       447 l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~  524 (597)
                      +..+|.+.|++++|++.|++.. ..| +...|..++.++...|++++|+..|+++++++|+++.++..++.+|...|+++
T Consensus        83 Lg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~  162 (723)
T 4gyw_A           83 MGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWT  162 (723)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCT
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHH
Confidence            9999999999999999998865 455 56789999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHh
Q 007573          525 DVTRVRLLMKE  535 (597)
Q Consensus       525 ~A~~~~~~~~~  535 (597)
                      +|.+.++++.+
T Consensus       163 ~A~~~~~kal~  173 (723)
T 4gyw_A          163 DYDERMKKLVS  173 (723)
T ss_dssp             THHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999888765

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.39  E-value=1.9e-11  Score=106.97  Aligned_cols=163  Identities=16%  Similarity=0.029  Sum_probs=114.1

Q ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHH
Q 007573          372 SWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDIL  451 (597)
Q Consensus       372 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~  451 (597)
                      .|..+...+...|++++|+..++++.+.. +.+..++..+...+...|++++|...++.+.+.  .+.+...+..++..+
T Consensus        10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~   86 (186)
T 3as5_A           10 YYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLAD--APDNVKVATVLGLTY   86 (186)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHH
Confidence            34445555566666666666666655432 234555666666666666777777766666553  123456666677777


Q ss_pred             hhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcHHHHHH
Q 007573          452 SRAGQLEKAWQITQGMP--FEADTGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRV  529 (597)
Q Consensus       452 ~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~  529 (597)
                      ...|++++|.+.++++.  .+.+...+..++..+...|++++|...++++++..|.++.++..++.++...|++++|.+.
T Consensus        87 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~  166 (186)
T 3as5_A           87 VQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPH  166 (186)
T ss_dssp             HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHH
Confidence            77777777777776654  3345667778888888888888888888888888888888888888888888999988888


Q ss_pred             HHHHHhCC
Q 007573          530 RLLMKEQG  537 (597)
Q Consensus       530 ~~~~~~~~  537 (597)
                      ++++.+..
T Consensus       167 ~~~~~~~~  174 (186)
T 3as5_A          167 FKKANELD  174 (186)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHcC
Confidence            88877643

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.38  E-value=5.4e-12  Score=122.08  Aligned_cols=268  Identities=12%  Similarity=-0.001  Sum_probs=157.9

Q ss_pred             HHHHHHHcCCChHHHHHHHhhcCCCCCCc-----hHHHHHHHHHHhcCCHHHHHHHHhhcCC---------CChhHHHHH
Q 007573          210 VMITGYVKNERFCEARELFYRMPDYDKNV-----FVVTAMITGFCKVGMLENARLLFERIQP---------KDCVSFNAM  275 (597)
Q Consensus       210 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~---------~~~~~~~~l  275 (597)
                      .....+...|++++|...++.+.+..|+.     .++..+...+...|++++|...+++...         ....++..+
T Consensus        10 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l   89 (338)
T 3ro2_A           10 LEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNL   89 (338)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHH
Confidence            34455556666666666666665544432     3455666666666776666666655321         123466777


Q ss_pred             HHHHHHcCChhHHHHHHHHhHHCCC-CCC----HHHHHHHHHHHhccch--------------------hHHHHHHHHHH
Q 007573          276 IAGYAQNGVAEEALRLFSGMIKMDM-QPD----DATLVSVFTACSALQL--------------------LNEGRQSHVLV  330 (597)
Q Consensus       276 i~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~~~~~ll~~~~~~~~--------------------~~~a~~~~~~~  330 (597)
                      ...+...|++++|+..+++..+... .++    ..++..+...+...|+                    ++.|...+...
T Consensus        90 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a  169 (338)
T 3ro2_A           90 GNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEEN  169 (338)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHH
Confidence            7778888888888888777654210 111    1244444455555555                    45554444433


Q ss_pred             HHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHhccCC--CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCC---
Q 007573          331 IRNGFEANVSVCNAVITMYSRCGGILDSELAFRQIHS--PNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGF-DPD---  404 (597)
Q Consensus       331 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~---  404 (597)
                      .+.                            ......  .....+..+...+...|++++|.+.+++..+... .++   
T Consensus       170 ~~~----------------------------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~  221 (338)
T 3ro2_A          170 LSL----------------------------VTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAA  221 (338)
T ss_dssp             HHH----------------------------HHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred             HHH----------------------------HHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHH
Confidence            221                            111100  0122455556666666777777776666553210 011   


Q ss_pred             -hHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC----hHHHHHHHHHHhhcCCHHHHHHHHhhCC----CCCC---
Q 007573          405 -GITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPS----SEHYTCLVDILSRAGQLEKAWQITQGMP----FEAD---  472 (597)
Q Consensus       405 -~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~---  472 (597)
                       ..++..+...+...|++++|...+++..+...-.++    ...+..+...|...|++++|...+++..    ..++   
T Consensus       222 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~  301 (338)
T 3ro2_A          222 ERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIG  301 (338)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHH
Confidence             235666677777778888887777776543211112    4567778888888888888888887654    1111   


Q ss_pred             -HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 007573          473 -TGVWGSLLAACVINLNVELGELAAKKMRELDPQ  505 (597)
Q Consensus       473 -~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~  505 (597)
                       ..++..+...+...|++++|...+++++++.+.
T Consensus       302 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  335 (338)
T 3ro2_A          302 EGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE  335 (338)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred             HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence             346778888899999999999999999987654

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.36  E-value=8.2e-11  Score=112.48  Aligned_cols=212  Identities=6%  Similarity=-0.022  Sum_probs=163.1

Q ss_pred             HHHHHHHHHHHhCCCCcccHHHHHHHHHH-------hcCCH-------HHHHHHHhccC----CCChhhHHHHHHHHHHc
Q 007573          322 EGRQSHVLVIRNGFEANVSVCNAVITMYS-------RCGGI-------LDSELAFRQIH----SPNLVSWNTIIAAFAQH  383 (597)
Q Consensus       322 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~g~~-------~~A~~~~~~~~----~~~~~~~~~li~~~~~~  383 (597)
                      +|..+++.+++.. +.+..+|..++..+.       +.|++       ++|..+|++..    +.+...|..++..+...
T Consensus        34 ~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~  112 (308)
T 2ond_A           34 RVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR  112 (308)
T ss_dssp             HHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence            3444444444432 344555555555554       35775       89999998764    33556899999999999


Q ss_pred             CCHHHHHHHHHHHHHCCCCCC-hH-HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHh-hcCCHHHH
Q 007573          384 GHYEKALIFFSQMGLNGFDPD-GI-TFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILS-RAGQLEKA  460 (597)
Q Consensus       384 g~~~~A~~~~~~m~~~g~~p~-~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~-~~g~~~~A  460 (597)
                      |++++|.++|+++.+.  .|+ .. .|..+...+.+.|++++|..+|+++.+.  .+++...|...+.... ..|+.++|
T Consensus       113 ~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~a~~~~~~~~~~~~A  188 (308)
T 2ond_A          113 MKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEYYCSKDKSVA  188 (308)
T ss_dssp             TCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS--TTCCTHHHHHHHHHHHHTSCCHHHH
T ss_pred             CCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHcCCHHHH
Confidence            9999999999999974  554 33 7888999999999999999999999863  2334555554444432 36999999


Q ss_pred             HHHHhhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc---CCC-CCchHHHHHHHHHhcCCcHHHHHHHHHHH
Q 007573          461 WQITQGMP--FEADTGVWGSLLAACVINLNVELGELAAKKMREL---DPQ-NSAVYVMLSNLYAAAGMWRDVTRVRLLMK  534 (597)
Q Consensus       461 ~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  534 (597)
                      .++|++..  .+.+...|..++..+...|++++|+.+|+++++.   .|+ +...+..++..+.+.|+.++|..+++++.
T Consensus       189 ~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~  268 (308)
T 2ond_A          189 FKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF  268 (308)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            99999875  3346789999999999999999999999999996   443 46788899999999999999999999998


Q ss_pred             hCCC
Q 007573          535 EQGV  538 (597)
Q Consensus       535 ~~~~  538 (597)
                      +..+
T Consensus       269 ~~~p  272 (308)
T 2ond_A          269 TAFR  272 (308)
T ss_dssp             HHTT
T ss_pred             HHcc
Confidence            7654

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.36  E-value=2.4e-11  Score=110.59  Aligned_cols=163  Identities=11%  Similarity=0.005  Sum_probs=77.6

Q ss_pred             hhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHH
Q 007573          371 VSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPS-SEHYTCLVD  449 (597)
Q Consensus       371 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~  449 (597)
                      ..|......+...|++++|++.|++..+....++...+..+..++...|++++|...+++..+.   .|+ ...+..+..
T Consensus         8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~l~~   84 (228)
T 4i17_A            8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK---NYNLANAYIGKSA   84 (228)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh---CcchHHHHHHHHH
Confidence            3344444444444444444444444444321133344444444444444444444444444421   222 334444444


Q ss_pred             HHhhcCCHHHHHHHHhhCC-CCC-CH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--CCchHHHHHHHHH
Q 007573          450 ILSRAGQLEKAWQITQGMP-FEA-DT-------GVWGSLLAACVINLNVELGELAAKKMRELDPQ--NSAVYVMLSNLYA  518 (597)
Q Consensus       450 ~~~~~g~~~~A~~~~~~~~-~~p-~~-------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~  518 (597)
                      +|...|++++|.+.+++.. ..| +.       ..|..+...+...|++++|+..++++++++|+  ++.++..++.+|.
T Consensus        85 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~  164 (228)
T 4i17_A           85 AYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFY  164 (228)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHH
Confidence            4444444444444444432 122 22       22444444444455555555555555555554  4444555555554


Q ss_pred             hcCC---------------------------cHHHHHHHHHHHhC
Q 007573          519 AAGM---------------------------WRDVTRVRLLMKEQ  536 (597)
Q Consensus       519 ~~g~---------------------------~~~A~~~~~~~~~~  536 (597)
                      ..|+                           +++|...+++..+.
T Consensus       165 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l  209 (228)
T 4i17_A          165 NNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTL  209 (228)
T ss_dssp             HHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            4444                           48899999988764

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.36  E-value=2.6e-11  Score=120.09  Aligned_cols=163  Identities=13%  Similarity=0.152  Sum_probs=80.8

Q ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCC----hHHHHHHHHHHhccCcHHHHHHHHHHhHHhc---CCCCC-hH
Q 007573          372 SWNTIIAAFAQHGHYEKALIFFSQMGLNGF-DPD----GITFLSLLSACGHAGKVNESMDLFELMVKVY---GIIPS-SE  442 (597)
Q Consensus       372 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~~p~-~~  442 (597)
                      +++.+...|...|++++|++.+++..+... .++    ..++..+..++...|++++|.+.+++..+..   +..|. ..
T Consensus       186 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  265 (383)
T 3ulq_A          186 CHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQ  265 (383)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHH
Confidence            344444455555555555555554442100 011    1244555555555555555555555544310   11122 44


Q ss_pred             HHHHHHHHHhhcCCHHHHHHHHhhCC------CCCC-HHHHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCCCCchHHH
Q 007573          443 HYTCLVDILSRAGQLEKAWQITQGMP------FEAD-TGVWGSLLAACVINLN---VELGELAAKKMRELDPQNSAVYVM  512 (597)
Q Consensus       443 ~~~~l~~~~~~~g~~~~A~~~~~~~~------~~p~-~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~  512 (597)
                      ++..+...|.+.|++++|.+.+++..      ..|. ...+..+...+...|+   +++|+..+++. ...|.....+..
T Consensus       266 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~  344 (383)
T 3ulq_A          266 AYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAID  344 (383)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHH
Confidence            55555566666666666665555433      0111 1123445555666666   55555555544 112222445666


Q ss_pred             HHHHHHhcCCcHHHHHHHHHHHh
Q 007573          513 LSNLYAAAGMWRDVTRVRLLMKE  535 (597)
Q Consensus       513 l~~~~~~~g~~~~A~~~~~~~~~  535 (597)
                      ++.+|...|++++|.+.+++..+
T Consensus       345 la~~y~~~g~~~~A~~~~~~al~  367 (383)
T 3ulq_A          345 VAKYYHERKNFQKASAYFLKVEQ  367 (383)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHH
Confidence            67777777777777777766654

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=99.36  E-value=1e-09  Score=114.73  Aligned_cols=397  Identities=8%  Similarity=-0.017  Sum_probs=275.1

Q ss_pred             CCChhhHHHHHHHHHcCCChHHHHHHHccCCC---CCchhHHHHHHHHHhCCC---hhHHHHHHHhccc-----CCcchH
Q 007573          140 ERNTATYNAMISGFLKHGRLEEATRLFEQMPR---RNVISYTAMLDGFMKKGE---VDKARALSDYMSF-----KNVVSW  208 (597)
Q Consensus       140 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~-----~~~~~~  208 (597)
                      +.|..+|..++..+.+.+.++.+..+|+++..   .....|...+..-.+.|+   ++.+..+|++...     |++..|
T Consensus        63 p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW  142 (679)
T 4e6h_A           63 PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLW  142 (679)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHH
T ss_pred             cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHH
Confidence            56889999999999999999999999999875   355678888888888898   9999999999943     777778


Q ss_pred             HHHHHHHHcCCCh--------HHHHHHHhhcCC---C-CCC-chHHHHHHHHHH---------hcCCHHHHHHHHhhcCC
Q 007573          209 TVMITGYVKNERF--------CEARELFYRMPD---Y-DKN-VFVVTAMITGFC---------KVGMLENARLLFERIQP  266 (597)
Q Consensus       209 ~~ll~~~~~~g~~--------~~a~~~~~~~~~---~-~~~-~~~~~~l~~~~~---------~~g~~~~A~~~~~~~~~  266 (597)
                      ...+....+.++.        +...++|+.+..   . .++ ..+|...+....         ..++++.+.++|++...
T Consensus       143 ~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~  222 (679)
T 4e6h_A          143 LSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLC  222 (679)
T ss_dssp             HHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHh
Confidence            7777665554433        334577776553   3 443 457777776543         23457889999998764


Q ss_pred             -C--Ch-hHHHHHHHHHHHcCC-------------hhHHHHHHHHhHH--CCCC---------------C-----CH---
Q 007573          267 -K--DC-VSFNAMIAGYAQNGV-------------AEEALRLFSGMIK--MDMQ---------------P-----DD---  304 (597)
Q Consensus       267 -~--~~-~~~~~li~~~~~~g~-------------~~~A~~~~~~m~~--~g~~---------------p-----~~---  304 (597)
                       |  +. ..|......-...+.             ++.|...+.++..  .++.               |     +.   
T Consensus       223 iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql  302 (679)
T 4e6h_A          223 QPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQL  302 (679)
T ss_dssp             SCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHH
T ss_pred             CccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHH
Confidence             2  11 244333222111111             2233444444321  1111               1     00   


Q ss_pred             HHHHHHHHHHhccc-------hhHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHH-HHHhccC---CCChhhH
Q 007573          305 ATLVSVFTACSALQ-------LLNEGRQSHVLVIRNGFEANVSVCNAVITMYSRCGGILDSE-LAFRQIH---SPNLVSW  373 (597)
Q Consensus       305 ~~~~~ll~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~---~~~~~~~  373 (597)
                      ..|...+.---..+       ..+.+..+++.++... +....+|-..+..+...|+.++|. .+|++..   +.+...|
T Consensus       303 ~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lw  381 (679)
T 4e6h_A          303 LIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLA  381 (679)
T ss_dssp             HHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHH
Confidence            12222222211111       2334556788777764 567888888888888999999996 9998776   4566678


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHCCC---------CCC------------hHHHHHHHHHHhccCcHHHHHHHHHHhH
Q 007573          374 NTIIAAFAQHGHYEKALIFFSQMGLNGF---------DPD------------GITFLSLLSACGHAGKVNESMDLFELMV  432 (597)
Q Consensus       374 ~~li~~~~~~g~~~~A~~~~~~m~~~g~---------~p~------------~~~~~~ll~~~~~~g~~~~a~~~~~~~~  432 (597)
                      -..+...-+.|++++|.++|+++.....         .|+            ...|...+....+.|..+.|+.+|..+.
T Consensus       382 l~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~  461 (679)
T 4e6h_A          382 FSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCR  461 (679)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            8888888999999999999999886310         142            2357777788788899999999999998


Q ss_pred             HhcCCCCChHHHHHHHHHHhhcC-CHHHHHHHHhhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---C
Q 007573          433 KVYGIIPSSEHYTCLVDILSRAG-QLEKAWQITQGMP--FEADTGVWGSLLAACVINLNVELGELAAKKMRELDPQ---N  506 (597)
Q Consensus       433 ~~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~---~  506 (597)
                      +.. -.+....|...+.+-.+.| +.+.|.++|+...  .+.+...|...+......|+.+.|..+|+++++..|+   .
T Consensus       462 ~~~-~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~  540 (679)
T 4e6h_A          462 RLK-KLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLL  540 (679)
T ss_dssp             HTG-GGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHH
T ss_pred             Hhc-CCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHH
Confidence            741 1223445555444444554 5899999998765  3446677888888888899999999999999998874   3


Q ss_pred             CchHHHHHHHHHhcCCcHHHHHHHHHHHhCCC
Q 007573          507 SAVYVMLSNLYAAAGMWRDVTRVRLLMKEQGV  538 (597)
Q Consensus       507 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  538 (597)
                      ...+...+..-...|+.+.+.++.+++.+.-+
T Consensus       541 ~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P  572 (679)
T 4e6h_A          541 KMIFQKVIFFESKVGSLNSVRTLEKRFFEKFP  572 (679)
T ss_dssp             HHHHHHHHHHHHHTCCSHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence            56788888889999999999999999987543

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.34  E-value=1e-09  Score=108.08  Aligned_cols=195  Identities=13%  Similarity=0.042  Sum_probs=135.8

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHhccC-------C---C-ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC--C--ChH
Q 007573          342 CNAVITMYSRCGGILDSELAFRQIH-------S---P-NLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFD--P--DGI  406 (597)
Q Consensus       342 ~~~l~~~~~~~g~~~~A~~~~~~~~-------~---~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p--~~~  406 (597)
                      +..+...+...|++++|...+++..       .   + ....+..+...+...|++++|...+++.......  +  ...
T Consensus        96 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  175 (373)
T 1hz4_A           96 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ  175 (373)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHH
Confidence            4455666677777777777666543       1   1 1235566777888889999999998887753211  1  134


Q ss_pred             HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHH-----HHHHHHhhcCCHHHHHHHHhhCC-CCCC-----HHH
Q 007573          407 TFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYT-----CLVDILSRAGQLEKAWQITQGMP-FEAD-----TGV  475 (597)
Q Consensus       407 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~-----~l~~~~~~~g~~~~A~~~~~~~~-~~p~-----~~~  475 (597)
                      ++..+...+...|++++|...+++......-......+.     ..+..+...|++++|...+++.. ..|.     ...
T Consensus       176 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~  255 (373)
T 1hz4_A          176 CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQ  255 (373)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHH
Confidence            677777888889999999999988875422211111121     23345778999999999998876 2221     235


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC------CchHHHHHHHHHhcCCcHHHHHHHHHHHhC
Q 007573          476 WGSLLAACVINLNVELGELAAKKMRELDPQN------SAVYVMLSNLYAAAGMWRDVTRVRLLMKEQ  536 (597)
Q Consensus       476 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  536 (597)
                      +..+...+...|++++|...++++++..+..      ...+..++.++...|+.++|.+.+++....
T Consensus       256 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~  322 (373)
T 1hz4_A          256 WRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL  322 (373)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            6677788899999999999999988764321      246777899999999999999999988763

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.34  E-value=2.7e-11  Score=123.07  Aligned_cols=179  Identities=10%  Similarity=-0.008  Sum_probs=156.2

Q ss_pred             HHHHHHHHhccC---CCChhhHHHHHHHHHHcCCH-HHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHH
Q 007573          355 ILDSELAFRQIH---SPNLVSWNTIIAAFAQHGHY-EKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFEL  430 (597)
Q Consensus       355 ~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~  430 (597)
                      ++++...++...   +.+...|..+...+...|++ ++|++.|++..+.. +-+...+..+..++...|++++|.+.|++
T Consensus        84 ~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~  162 (474)
T 4abn_A           84 MEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFSG  162 (474)
T ss_dssp             HHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            455555555443   45678899999999999999 99999999998763 33477899999999999999999999999


Q ss_pred             hHHhcCCCCChHHHHHHHHHHhhc---------CCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhc--------CCHHH
Q 007573          431 MVKVYGIIPSSEHYTCLVDILSRA---------GQLEKAWQITQGMP-FEA-DTGVWGSLLAACVIN--------LNVEL  491 (597)
Q Consensus       431 ~~~~~~~~p~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~--------g~~~~  491 (597)
                      +.+   +.|+...+..+..+|...         |++++|.+.+++.. ..| +...|..+..++...        |++++
T Consensus       163 al~---~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~  239 (474)
T 4abn_A          163 ALT---HCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQ  239 (474)
T ss_dssp             HHT---TCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred             HHh---hCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHH
Confidence            874   468888999999999999         99999999999876 344 577999999999988        99999


Q ss_pred             HHHHHHHHHhcCC---CCCchHHHHHHHHHhcCCcHHHHHHHHHHHhCC
Q 007573          492 GELAAKKMRELDP---QNSAVYVMLSNLYAAAGMWRDVTRVRLLMKEQG  537 (597)
Q Consensus       492 a~~~~~~~~~~~p---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  537 (597)
                      |+..++++++++|   .++.++..++.+|...|++++|.+.+++..+..
T Consensus       240 A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~  288 (474)
T 4abn_A          240 ALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD  288 (474)
T ss_dssp             HHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            9999999999999   899999999999999999999999999998754

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.33  E-value=2.6e-11  Score=120.04  Aligned_cols=290  Identities=10%  Similarity=0.011  Sum_probs=210.0

Q ss_pred             HHcCCChHHHHHHHhhcCC----CCCC--chHHHHHHHH--HHhcCCHHHHH-----------HHHhhcCCC--ChhH--
Q 007573          215 YVKNERFCEARELFYRMPD----YDKN--VFVVTAMITG--FCKVGMLENAR-----------LLFERIQPK--DCVS--  271 (597)
Q Consensus       215 ~~~~g~~~~a~~~~~~~~~----~~~~--~~~~~~l~~~--~~~~g~~~~A~-----------~~~~~~~~~--~~~~--  271 (597)
                      +.+.+++++|..+++++.+    ...+  ...|..++..  ..-.+.++.+.           ..++.+...  +...  
T Consensus        22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~l  101 (383)
T 3ulq_A           22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQARLTGLL  101 (383)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHTHHHHHHH
T ss_pred             HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcCCCchhHH
Confidence            4578999999999998865    2233  3333444332  11223333333           555544321  1111  


Q ss_pred             ----HHHHHHHHHHcCChhHHHHHHHHhHHCC-CCCC----HHHHHHHHHHHhccchhHHHHHHHHHHHHhCCCC-----
Q 007573          272 ----FNAMIAGYAQNGVAEEALRLFSGMIKMD-MQPD----DATLVSVFTACSALQLLNEGRQSHVLVIRNGFEA-----  337 (597)
Q Consensus       272 ----~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-----  337 (597)
                          +......+...|++++|+..|++..+.- -.++    ..++..+...+...|+.+.|...+..+++.....     
T Consensus       102 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~  181 (383)
T 3ulq_A          102 EYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNI  181 (383)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHH
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchH
Confidence                2235667888999999999999987641 1122    3467777888889999999999999987652111     


Q ss_pred             -cccHHHHHHHHHHhcCCHHHHHHHHhccC-----CCCh----hhHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCC
Q 007573          338 -NVSVCNAVITMYSRCGGILDSELAFRQIH-----SPNL----VSWNTIIAAFAQHGHYEKALIFFSQMGLN----GFDP  403 (597)
Q Consensus       338 -~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p  403 (597)
                       ...+++.+...|...|++++|...+++..     .++.    .++..+...|...|++++|++.+++..+.    +..|
T Consensus       182 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~  261 (383)
T 3ulq_A          182 RLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILP  261 (383)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGG
T ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccch
Confidence             23578889999999999999999998776     1222    37888999999999999999999998762    3223


Q ss_pred             -ChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC---hHHHHHHHHHHhhcCC---HHHHHHHHhhCCCCCC-HHH
Q 007573          404 -DGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPS---SEHYTCLVDILSRAGQ---LEKAWQITQGMPFEAD-TGV  475 (597)
Q Consensus       404 -~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~p~-~~~  475 (597)
                       ...++..+...+...|++++|...+++..+...-..+   ...+..+...|...|+   .++|..++++....|+ ...
T Consensus       262 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~  341 (383)
T 3ulq_A          262 SLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDF  341 (383)
T ss_dssp             GHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHH
Confidence             3567888999999999999999999988764221112   3346778889999999   8999999999864444 346


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 007573          476 WGSLLAACVINLNVELGELAAKKMRELDP  504 (597)
Q Consensus       476 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~p  504 (597)
                      +..+...|...|++++|...+++++++..
T Consensus       342 ~~~la~~y~~~g~~~~A~~~~~~al~~~~  370 (383)
T 3ulq_A          342 AIDVAKYYHERKNFQKASAYFLKVEQVRQ  370 (383)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence            77888999999999999999999987643

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.33  E-value=1.9e-12  Score=123.91  Aligned_cols=237  Identities=13%  Similarity=0.108  Sum_probs=130.4

Q ss_pred             hhHHHHHHHHHHHcCChhHHHHHHHHhHHC-------CCCCCHHHHHHHHHHHhccchhHHHHHHHHHHHHh------CC
Q 007573          269 CVSFNAMIAGYAQNGVAEEALRLFSGMIKM-------DMQPDDATLVSVFTACSALQLLNEGRQSHVLVIRN------GF  335 (597)
Q Consensus       269 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~  335 (597)
                      ..++..+...+...|++++|+.+++++.+.       ........+..+...+...|++++|...+..+++.      +.
T Consensus        27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  106 (311)
T 3nf1_A           27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD  106 (311)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence            457888889999999999999999888762       11112334444555555556666666555555432      11


Q ss_pred             CCcccHHHHHHHHHHhcCCHHHHHHHHhccCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHC------CCCCC-hHHH
Q 007573          336 EANVSVCNAVITMYSRCGGILDSELAFRQIHSPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLN------GFDPD-GITF  408 (597)
Q Consensus       336 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~-~~~~  408 (597)
                      .+                              ....++..+...+...|++++|++.++++.+.      +-.|+ ...+
T Consensus       107 ~~------------------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~  156 (311)
T 3nf1_A          107 HP------------------------------AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQL  156 (311)
T ss_dssp             CH------------------------------HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             Ch------------------------------HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHH
Confidence            01                              11234455555555666666666666555442      11122 3345


Q ss_pred             HHHHHHHhccCcHHHHHHHHHHhHHhc-----CCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC----------CCCC
Q 007573          409 LSLLSACGHAGKVNESMDLFELMVKVY-----GIIPS-SEHYTCLVDILSRAGQLEKAWQITQGMP----------FEAD  472 (597)
Q Consensus       409 ~~ll~~~~~~g~~~~a~~~~~~~~~~~-----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~----------~~p~  472 (597)
                      ..+...+...|++++|.++++++.+..     +..|. ...+..+...|...|++++|.+.++++.          ..+.
T Consensus       157 ~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  236 (311)
T 3nf1_A          157 NNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDE  236 (311)
T ss_dssp             HHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcc
Confidence            556666666677777776666665431     11122 3456666666777777777776665543          0111


Q ss_pred             -------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHh
Q 007573          473 -------TGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRVRLLMKE  535 (597)
Q Consensus       473 -------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  535 (597)
                             ...+..+...+...+.+.++...++++....|..+.++..++.+|...|++++|.+.+++..+
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  306 (311)
T 3nf1_A          237 NKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR  306 (311)
T ss_dssp             -CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence                   112222223344455566666677777777777778888888888888888888888888765

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.32  E-value=1.2e-10  Score=101.63  Aligned_cols=167  Identities=11%  Similarity=-0.026  Sum_probs=143.9

Q ss_pred             cHHHHHHHHHHhcCCHHHHHHHHhccC---CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHh
Q 007573          340 SVCNAVITMYSRCGGILDSELAFRQIH---SPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACG  416 (597)
Q Consensus       340 ~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~  416 (597)
                      ..+..+...+...|++++|...++++.   +.+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+.
T Consensus         9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~   87 (186)
T 3as5_A            9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYV   87 (186)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence            456667788899999999999999887   3567788999999999999999999999998753 445778888889999


Q ss_pred             ccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHhcCCHHHHHH
Q 007573          417 HAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMP--FEADTGVWGSLLAACVINLNVELGEL  494 (597)
Q Consensus       417 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~  494 (597)
                      ..|++++|.+.++.+.+.  .+.+...+..++..+...|++++|.+.++++.  .+.+...+..++..+...|++++|..
T Consensus        88 ~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~  165 (186)
T 3as5_A           88 QVQKYDLAVPLLIKVAEA--NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALP  165 (186)
T ss_dssp             HHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HhcCHHHHHHHHHHHHhc--CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHH
Confidence            999999999999999874  34467888899999999999999999998875  34467789999999999999999999


Q ss_pred             HHHHHHhcCCCCCch
Q 007573          495 AAKKMRELDPQNSAV  509 (597)
Q Consensus       495 ~~~~~~~~~p~~~~~  509 (597)
                      .++++++..|+++..
T Consensus       166 ~~~~~~~~~~~~~~~  180 (186)
T 3as5_A          166 HFKKANELDEGASVE  180 (186)
T ss_dssp             HHHHHHHHHHCCCGG
T ss_pred             HHHHHHHcCCCchhh
Confidence            999999999887543

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.31  E-value=1e-10  Score=106.44  Aligned_cols=203  Identities=9%  Similarity=0.011  Sum_probs=131.2

Q ss_pred             CHHHHHHHHHHHhccchhHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHhccC---CCChhhHHHHHHH
Q 007573          303 DDATLVSVFTACSALQLLNEGRQSHVLVIRNGFEANVSVCNAVITMYSRCGGILDSELAFRQIH---SPNLVSWNTIIAA  379 (597)
Q Consensus       303 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~  379 (597)
                      |...+......+...|++++|...+..+++...+++...+..+..++...|++++|+..+++..   +.+...|..+...
T Consensus         6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~   85 (228)
T 4i17_A            6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAA   85 (228)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHH
Confidence            4456666666777777888888888777777643555666667777777777777777777665   3345567777777


Q ss_pred             HHHcCCHHHHHHHHHHHHHCCCCCC-h-------HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC---hHHHHHHH
Q 007573          380 FAQHGHYEKALIFFSQMGLNGFDPD-G-------ITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPS---SEHYTCLV  448 (597)
Q Consensus       380 ~~~~g~~~~A~~~~~~m~~~g~~p~-~-------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~l~  448 (597)
                      +...|++++|++.+++..+.  .|+ .       ..|..+...+...|++++|.+.|+++.+   +.|+   ...+..+.
T Consensus        86 ~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~~l~  160 (228)
T 4i17_A           86 YRDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD---VTSKKWKTDALYSLG  160 (228)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---SSCHHHHHHHHHHHH
T ss_pred             HHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh---cCCCcccHHHHHHHH
Confidence            77777777777777777664  233 3       3456666666777777777777777653   3443   45566666


Q ss_pred             HHHhhcCCH--HHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 007573          449 DILSRAGQL--EKAWQITQGMPFEADTGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLY  517 (597)
Q Consensus       449 ~~~~~~g~~--~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~  517 (597)
                      .+|...|+.  ++|..+     ...+...+....  ....+.+++|+..++++++++|+++.+...+..+.
T Consensus       161 ~~~~~~~~~~~~~a~~~-----~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~  224 (228)
T 4i17_A          161 VLFYNNGADVLRKATPL-----ASSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVK  224 (228)
T ss_dssp             HHHHHHHHHHHHHHGGG-----TTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhc-----ccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence            666555433  222111     122233333322  23345579999999999999999988777666553

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.29  E-value=6.1e-12  Score=120.43  Aligned_cols=244  Identities=14%  Similarity=0.074  Sum_probs=149.1

Q ss_pred             chHHHHHHHHHHhcCCHHHHHHHHhhcCC--------C---ChhHHHHHHHHHHHcCChhHHHHHHHHhHHC------CC
Q 007573          238 VFVVTAMITGFCKVGMLENARLLFERIQP--------K---DCVSFNAMIAGYAQNGVAEEALRLFSGMIKM------DM  300 (597)
Q Consensus       238 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~  300 (597)
                      ..++..+...+...|++++|...|+++.+        .   ...++..+...|...|++++|+..+++..+.      +-
T Consensus        27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  106 (311)
T 3nf1_A           27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD  106 (311)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence            45678899999999999999999988654        2   2357888999999999999999999998764      22


Q ss_pred             CC-CHHHHHHHHHHHhccchhHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHhccCCCChhhHHHHHHH
Q 007573          301 QP-DDATLVSVFTACSALQLLNEGRQSHVLVIRNGFEANVSVCNAVITMYSRCGGILDSELAFRQIHSPNLVSWNTIIAA  379 (597)
Q Consensus       301 ~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~  379 (597)
                      .| ....+..+...+...|++++|...+..+.+....                        .+..-.+.....+..+...
T Consensus       107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~------------------------~~~~~~~~~~~~~~~la~~  162 (311)
T 3nf1_A          107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREK------------------------VLGKDHPDVAKQLNNLALL  162 (311)
T ss_dssp             CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH------------------------HHCTTCHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHH------------------------hcCCCChHHHHHHHHHHHH
Confidence            23 2345566666777777777777777766543100                        0000000112345555666


Q ss_pred             HHHcCCHHHHHHHHHHHHHC------CCCCC-hHHHHHHHHHHhccCcHHHHHHHHHHhHHhc------CCCCC-h----
Q 007573          380 FAQHGHYEKALIFFSQMGLN------GFDPD-GITFLSLLSACGHAGKVNESMDLFELMVKVY------GIIPS-S----  441 (597)
Q Consensus       380 ~~~~g~~~~A~~~~~~m~~~------g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~------~~~p~-~----  441 (597)
                      +...|++++|+++++++.+.      +..|+ ..++..+...+...|++++|.+.++++.+..      ...+. .    
T Consensus       163 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~  242 (311)
T 3nf1_A          163 CQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWM  242 (311)
T ss_dssp             HHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHH
Confidence            66666666666666666543      11222 3356666677777777777777777766421      11111 1    


Q ss_pred             --HHHHHHHHHHhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 007573          442 --EHYTCLVDILSRAGQLEKAWQITQGMP-FEA-DTGVWGSLLAACVINLNVELGELAAKKMRELDPQ  505 (597)
Q Consensus       442 --~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~  505 (597)
                        ..+..+...+...+.+.+|...++... ..| +..++..+...|...|++++|...+++++++.|+
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~  310 (311)
T 3nf1_A          243 HAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ  310 (311)
T ss_dssp             HHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence              112222333344455555555665554 233 3557888999999999999999999999988775

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.25  E-value=1.1e-09  Score=108.09  Aligned_cols=163  Identities=17%  Similarity=0.090  Sum_probs=80.8

Q ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCC-ChHHHHHHHHHHhccCcHHHHHHHHHHhHHhc---CCCCChHH
Q 007573          372 SWNTIIAAFAQHGHYEKALIFFSQMGLN----GFDP-DGITFLSLLSACGHAGKVNESMDLFELMVKVY---GIIPSSEH  443 (597)
Q Consensus       372 ~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~~p~~~~  443 (597)
                      +++.+...|...|++++|++.+++..+.    +-.+ ...++..+..++...|++++|.+.+++..+..   +.+....+
T Consensus       184 ~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~  263 (378)
T 3q15_A          184 SLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKV  263 (378)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHH
Confidence            3444455555555555555555544431    1011 12344555555556666666666655554410   11112445


Q ss_pred             HHHHHHHHhhcCCHHHHHHHHhhCC------CCCC-HHHHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCCCCchHHHH
Q 007573          444 YTCLVDILSRAGQLEKAWQITQGMP------FEAD-TGVWGSLLAACVINLN---VELGELAAKKMRELDPQNSAVYVML  513 (597)
Q Consensus       444 ~~~l~~~~~~~g~~~~A~~~~~~~~------~~p~-~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l  513 (597)
                      +..+...|.+.|++++|...+++..      ..|. ...+..+...+...++   +++|+..+++. ...|.....+..+
T Consensus       264 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~l  342 (378)
T 3q15_A          264 LFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARSA  342 (378)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHHH
Confidence            5556666666666666666655432      1122 2234444444555555   55555555541 1112224455566


Q ss_pred             HHHHHhcCCcHHHHHHHHHHHh
Q 007573          514 SNLYAAAGMWRDVTRVRLLMKE  535 (597)
Q Consensus       514 ~~~~~~~g~~~~A~~~~~~~~~  535 (597)
                      +..|...|++++|.+.+++..+
T Consensus       343 a~~y~~~g~~~~A~~~~~~al~  364 (378)
T 3q15_A          343 AAVFESSCHFEQAAAFYRKVLK  364 (378)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHH
Confidence            7777777777777776666644

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.24  E-value=3.7e-10  Score=105.04  Aligned_cols=87  Identities=10%  Similarity=0.013  Sum_probs=72.3

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---CchHHHHHHHHHhc----------CCcHHHHHHHHHHHhCCCccCCC
Q 007573          477 GSLLAACVINLNVELGELAAKKMRELDPQN---SAVYVMLSNLYAAA----------GMWRDVTRVRLLMKEQGVTKQCA  543 (597)
Q Consensus       477 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~~~~~  543 (597)
                      ..++..+...|++++|+..++++++..|++   +.++..++.+|...          |++++|.+.++++.+..+     
T Consensus       152 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p-----  226 (261)
T 3qky_A          152 YEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFP-----  226 (261)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCT-----
T ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCC-----
Confidence            566788999999999999999999999985   45788999999977          899999999999987543     


Q ss_pred             eeEEEECCEEEEEEeCCCCCcchHHHHHHHHHHHHHHhhcCCc
Q 007573          544 YSWIEIGNKVHYFLGGDMSHPCIDKIHLELKRASVQMKSVDDF  586 (597)
Q Consensus       544 ~s~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~  586 (597)
                                        .+|...++...+..+...+++.+.-
T Consensus       227 ------------------~~~~~~~a~~~l~~~~~~~~~~~~~  251 (261)
T 3qky_A          227 ------------------DSPLLRTAEELYTRARQRLTELEGD  251 (261)
T ss_dssp             ------------------TCTHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             ------------------CChHHHHHHHHHHHHHHHHHHhhhh
Confidence                              2677778888888888777766543

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.23  E-value=2.4e-10  Score=112.77  Aligned_cols=295  Identities=12%  Similarity=0.031  Sum_probs=208.6

Q ss_pred             hHHHHHHHH--HcCCChHHHHHHHhhcCC----CCC--CchHHHHHHHHH--HhcCCHHHHH---------HHHhhcC--
Q 007573          207 SWTVMITGY--VKNERFCEARELFYRMPD----YDK--NVFVVTAMITGF--CKVGMLENAR---------LLFERIQ--  265 (597)
Q Consensus       207 ~~~~ll~~~--~~~g~~~~a~~~~~~~~~----~~~--~~~~~~~l~~~~--~~~g~~~~A~---------~~~~~~~--  265 (597)
                      .-+.+-..|  ...+++++|.++++++.+    ...  +...|..++..-  .-.+.++.+.         ..++.+.  
T Consensus        12 v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~   91 (378)
T 3q15_A           12 VGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETIETP   91 (378)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHHHHGG
T ss_pred             HHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHHHhcc
Confidence            333444455  789999999999998744    222  333444443321  1112221122         4444432  


Q ss_pred             -CC-C-h---hHHHHHHHHHHHcCChhHHHHHHHHhHHCCC-CCC----HHHHHHHHHHHhccchhHHHHHHHHHHHHhC
Q 007573          266 -PK-D-C---VSFNAMIAGYAQNGVAEEALRLFSGMIKMDM-QPD----DATLVSVFTACSALQLLNEGRQSHVLVIRNG  334 (597)
Q Consensus       266 -~~-~-~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~  334 (597)
                       .+ + .   ..|......+...|++++|+..|++..+.-. .++    ...+..+...+...|+.+.|...+..+++..
T Consensus        92 ~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~  171 (378)
T 3q15_A           92 QKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIY  171 (378)
T ss_dssp             GHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence             22 1 1   1234455667889999999999999876421 123    3456677788889999999999999887642


Q ss_pred             CC------CcccHHHHHHHHHHhcCCHHHHHHHHhccCC-----CC----hhhHHHHHHHHHHcCCHHHHHHHHHHHHH-
Q 007573          335 FE------ANVSVCNAVITMYSRCGGILDSELAFRQIHS-----PN----LVSWNTIIAAFAQHGHYEKALIFFSQMGL-  398 (597)
Q Consensus       335 ~~------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~-  398 (597)
                      ..      ....+++.+...|...|++++|...+++...     ++    ..++..+...|...|++++|++.+++..+ 
T Consensus       172 ~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~  251 (378)
T 3q15_A          172 QNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKV  251 (378)
T ss_dssp             HTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            11      1245678899999999999999999987651     22    34778888999999999999999999886 


Q ss_pred             ----CCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC---hHHHHHHHHHHhhcCC---HHHHHHHHhhCC
Q 007573          399 ----NGFDPDGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPS---SEHYTCLVDILSRAGQ---LEKAWQITQGMP  468 (597)
Q Consensus       399 ----~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~---~~~A~~~~~~~~  468 (597)
                          .. +....++..+...+.+.|++++|...+++..+...-.++   ...+..+...|...|+   +.+|...+++..
T Consensus       252 ~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~  330 (378)
T 3q15_A          252 SREKVP-DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKN  330 (378)
T ss_dssp             HHHHCG-GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTT
T ss_pred             HHhhCC-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCC
Confidence                32 223667888899999999999999999998875332222   4456777778888888   899999999866


Q ss_pred             CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 007573          469 FEAD-TGVWGSLLAACVINLNVELGELAAKKMREL  502 (597)
Q Consensus       469 ~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  502 (597)
                      ..|+ ...+..+...|...|++++|...++++++.
T Consensus       331 ~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~  365 (378)
T 3q15_A          331 LHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKA  365 (378)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            4443 346677888899999999999999998864

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.15  E-value=8e-09  Score=101.59  Aligned_cols=264  Identities=10%  Similarity=-0.044  Sum_probs=116.7

Q ss_pred             HHHcCCChHHHHHHHhhcCCCCCCc------hHHHHHHHHHHhcCCHHHHHHHHhhcCC-----CCh----hHHHHHHHH
Q 007573          214 GYVKNERFCEARELFYRMPDYDKNV------FVVTAMITGFCKVGMLENARLLFERIQP-----KDC----VSFNAMIAG  278 (597)
Q Consensus       214 ~~~~~g~~~~a~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~----~~~~~li~~  278 (597)
                      .+...|++++|...++......|+.      .+++.+...+...|++++|...+++...     .+.    .++..+...
T Consensus        23 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~  102 (373)
T 1hz4_A           23 VAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEI  102 (373)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence            3444555555555555544322211      1234444555556666666655554332     111    234455566


Q ss_pred             HHHcCChhHHHHHHHHhHHC----CCC--CC-HHHHHHHHHHHhccchhHHHHHHHHHHHHhCCCCcccHHHHHHHHHHh
Q 007573          279 YAQNGVAEEALRLFSGMIKM----DMQ--PD-DATLVSVFTACSALQLLNEGRQSHVLVIRNGFEANVSVCNAVITMYSR  351 (597)
Q Consensus       279 ~~~~g~~~~A~~~~~~m~~~----g~~--p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  351 (597)
                      +...|++++|...+++..+.    +..  |. ...+..+...+...|++++|...+...++.......            
T Consensus       103 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~------------  170 (373)
T 1hz4_A          103 LFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQP------------  170 (373)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCG------------
T ss_pred             HHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCc------------
Confidence            66667777666666665432    111  11 112222333334444444444444444332211000            


Q ss_pred             cCCHHHHHHHHhccCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-hHHHH-----HHHHHHhccCcHHHHH
Q 007573          352 CGGILDSELAFRQIHSPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPD-GITFL-----SLLSACGHAGKVNESM  425 (597)
Q Consensus       352 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~-----~ll~~~~~~g~~~~a~  425 (597)
                                     .....++..+...+...|++++|...+++.......++ ...+.     ..+..+...|++++|.
T Consensus       171 ---------------~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~  235 (373)
T 1hz4_A          171 ---------------QQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAA  235 (373)
T ss_dssp             ---------------GGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             ---------------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHH
Confidence                           00112344444445555555555555555443211111 01111     1122244555566665


Q ss_pred             HHHHHhHHhcCCCC--ChHHHHHHHHHHhhcCCHHHHHHHHhhCC-----C--CCCH-HHHHHHHHHHHhcCCHHHHHHH
Q 007573          426 DLFELMVKVYGIIP--SSEHYTCLVDILSRAGQLEKAWQITQGMP-----F--EADT-GVWGSLLAACVINLNVELGELA  495 (597)
Q Consensus       426 ~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~--~p~~-~~~~~l~~~~~~~g~~~~a~~~  495 (597)
                      ..++.......-.+  ....+..+..++...|++++|.+.+++..     .  .++. ..+..+..++...|+.++|...
T Consensus       236 ~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  315 (373)
T 1hz4_A          236 NWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRV  315 (373)
T ss_dssp             HHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHH
Confidence            55555432110000  01234455555666666666666555442     0  0111 1344455556666777777777


Q ss_pred             HHHHHhcCC
Q 007573          496 AKKMRELDP  504 (597)
Q Consensus       496 ~~~~~~~~p  504 (597)
                      +++++++.+
T Consensus       316 l~~al~~~~  324 (373)
T 1hz4_A          316 LLDALKLAN  324 (373)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHhc
Confidence            666665443

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.14  E-value=5e-10  Score=106.05  Aligned_cols=187  Identities=11%  Similarity=-0.005  Sum_probs=126.9

Q ss_pred             HHHHhcCCHHHHHHHHhccCC-----CC----hhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCC---CCC--hHHHHHHH
Q 007573          347 TMYSRCGGILDSELAFRQIHS-----PN----LVSWNTIIAAFAQHGHYEKALIFFSQMGLNGF---DPD--GITFLSLL  412 (597)
Q Consensus       347 ~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~p~--~~~~~~ll  412 (597)
                      ..|...|++++|...|++...     .+    ..+|+.+...|...|++++|+..+++..+...   .+.  ..++..+.
T Consensus        45 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg  124 (292)
T 1qqe_A           45 TIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELG  124 (292)
T ss_dssp             HHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            345556666666666554431     11    34677778888888888888888877764210   111  34677888


Q ss_pred             HHHhcc-CcHHHHHHHHHHhHHhcCCCCC----hHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCCCH--------HHHHH
Q 007573          413 SACGHA-GKVNESMDLFELMVKVYGIIPS----SEHYTCLVDILSRAGQLEKAWQITQGMP-FEADT--------GVWGS  478 (597)
Q Consensus       413 ~~~~~~-g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~--------~~~~~  478 (597)
                      ..+... |++++|...|++..+...-..+    ..++..+...|.+.|++++|...+++.. ..|+.        ..|..
T Consensus       125 ~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  204 (292)
T 1qqe_A          125 EILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLK  204 (292)
T ss_dssp             HHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHH
T ss_pred             HHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHH
Confidence            888885 9999999999988764221111    3568888999999999999999998764 23321        15677


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhcCCCCCch-----HHHHHHHHH--hcCCcHHHHHHHHHH
Q 007573          479 LLAACVINLNVELGELAAKKMRELDPQNSAV-----YVMLSNLYA--AAGMWRDVTRVRLLM  533 (597)
Q Consensus       479 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~-----~~~l~~~~~--~~g~~~~A~~~~~~~  533 (597)
                      ++.++...|++++|+..++++++++|.....     +..++.++.  ..+++++|++.|+.+
T Consensus       205 lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~  266 (292)
T 1qqe_A          205 KGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNF  266 (292)
T ss_dssp             HHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTS
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccC
Confidence            8888999999999999999999999986442     344566664  456788888887654

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.13  E-value=5.5e-10  Score=104.90  Aligned_cols=220  Identities=12%  Similarity=0.124  Sum_probs=137.4

Q ss_pred             ccchhHHHHHHHHHHHHh-------CCCCcccHHHHHHHHHHhcCCHHHHHHHHhccCC-----------CChhhHHHHH
Q 007573          316 ALQLLNEGRQSHVLVIRN-------GFEANVSVCNAVITMYSRCGGILDSELAFRQIHS-----------PNLVSWNTII  377 (597)
Q Consensus       316 ~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----------~~~~~~~~li  377 (597)
                      ..|+++.|...+++.++.       ..+....++..+...|...|++++|...+++...           ....++..+.
T Consensus        13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~   92 (283)
T 3edt_B           13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA   92 (283)
T ss_dssp             CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence            456666666666665542       2233456677788888888888888887776541           1234677777


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHC------CCCC-ChHHHHHHHHHHhccCcHHHHHHHHHHhHHhc-----CCCC-ChHHH
Q 007573          378 AAFAQHGHYEKALIFFSQMGLN------GFDP-DGITFLSLLSACGHAGKVNESMDLFELMVKVY-----GIIP-SSEHY  444 (597)
Q Consensus       378 ~~~~~~g~~~~A~~~~~~m~~~------g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-----~~~p-~~~~~  444 (597)
                      ..|...|++++|++.+++....      .-.| ...++..+...+...|++++|...++++.+..     +..| ....+
T Consensus        93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  172 (283)
T 3edt_B           93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTK  172 (283)
T ss_dssp             HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred             HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence            7888888888888888877653      1112 24566777777888888888888888776531     1122 24567


Q ss_pred             HHHHHHHhhcCCHHHHHHHHhhCC----------CCCC-HHHHHHHHHHHHhcCC------HHHHHHHHHHHHhcCCCCC
Q 007573          445 TCLVDILSRAGQLEKAWQITQGMP----------FEAD-TGVWGSLLAACVINLN------VELGELAAKKMRELDPQNS  507 (597)
Q Consensus       445 ~~l~~~~~~~g~~~~A~~~~~~~~----------~~p~-~~~~~~l~~~~~~~g~------~~~a~~~~~~~~~~~p~~~  507 (597)
                      ..+...|.+.|++++|.+++++..          ..+. ...|..+.......+.      +..+...++......|...
T Consensus       173 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (283)
T 3edt_B          173 NNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVN  252 (283)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHH
Confidence            777788888888888888776653          1122 2233333333332222      2333333332222334446


Q ss_pred             chHHHHHHHHHhcCCcHHHHHHHHHHHh
Q 007573          508 AVYVMLSNLYAAAGMWRDVTRVRLLMKE  535 (597)
Q Consensus       508 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~  535 (597)
                      .++..++.+|...|++++|.+++++..+
T Consensus       253 ~~~~~la~~~~~~g~~~~A~~~~~~al~  280 (283)
T 3edt_B          253 TTLRSLGALYRRQGKLEAAHTLEDCASR  280 (283)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            7789999999999999999999998875

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.13  E-value=4e-10  Score=119.20  Aligned_cols=163  Identities=12%  Similarity=0.168  Sum_probs=140.8

Q ss_pred             CcccHHHHHHHHHHhcCCHHHHHHHHhccC---CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-hHHHHHHH
Q 007573          337 ANVSVCNAVITMYSRCGGILDSELAFRQIH---SPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPD-GITFLSLL  412 (597)
Q Consensus       337 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll  412 (597)
                      .+...++.|...|.+.|++++|+..|++..   +.+..+|+.+...|.+.|++++|++.|++..+.  .|+ ...|..+.
T Consensus         7 ~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~a~~nLg   84 (723)
T 4gyw_A            7 THADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMG   84 (723)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence            345678888899999999999999998776   456788999999999999999999999999875  454 77899999


Q ss_pred             HHHhccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCH
Q 007573          413 SACGHAGKVNESMDLFELMVKVYGIIPS-SEHYTCLVDILSRAGQLEKAWQITQGMP-FEA-DTGVWGSLLAACVINLNV  489 (597)
Q Consensus       413 ~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~  489 (597)
                      .++...|++++|.+.|++..+.   .|+ ...|..+..+|.+.|++++|++.|++.. ..| +...+..++..+...|++
T Consensus        85 ~~l~~~g~~~~A~~~~~kAl~l---~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~  161 (723)
T 4gyw_A           85 NTLKEMQDVQGALQCYTRAIQI---NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDW  161 (723)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccH
Confidence            9999999999999999998864   454 7889999999999999999999999876 555 467899999999999999


Q ss_pred             HHHHHHHHHHHhcCC
Q 007573          490 ELGELAAKKMRELDP  504 (597)
Q Consensus       490 ~~a~~~~~~~~~~~p  504 (597)
                      ++|.+.+++++++.|
T Consensus       162 ~~A~~~~~kal~l~~  176 (723)
T 4gyw_A          162 TDYDERMKKLVSIVA  176 (723)
T ss_dssp             TTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCh
Confidence            999999999987654

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.10  E-value=2.2e-09  Score=87.90  Aligned_cols=127  Identities=18%  Similarity=0.188  Sum_probs=78.9

Q ss_pred             HHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHhc
Q 007573          409 LSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMP--FEADTGVWGSLLAACVIN  486 (597)
Q Consensus       409 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~  486 (597)
                      ..+...+...|++++|..+++.+.+.  .+.+...+..++..+...|++++|.++++++.  .+.+...+..++..+...
T Consensus         5 ~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~   82 (136)
T 2fo7_A            5 YNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQ   82 (136)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHcCcHHHHHHHHHHHHHc--CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHh
Confidence            33444444455555555555554432  11234445555555555556666655555543  223455666677777777


Q ss_pred             CCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHhCC
Q 007573          487 LNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRVRLLMKEQG  537 (597)
Q Consensus       487 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  537 (597)
                      |++++|...++++++..|.++..+..++.++...|++++|.+.++++.+..
T Consensus        83 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~  133 (136)
T 2fo7_A           83 GDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD  133 (136)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHS
T ss_pred             cCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccC
Confidence            777778888877777777777777777888888888888888877776543

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.10  E-value=6.4e-09  Score=94.13  Aligned_cols=179  Identities=10%  Similarity=0.002  Sum_probs=108.8

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHhccC--CCC----hhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCh----HHHHH
Q 007573          341 VCNAVITMYSRCGGILDSELAFRQIH--SPN----LVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDG----ITFLS  410 (597)
Q Consensus       341 ~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~  410 (597)
                      .+..+...+.+.|++++|+..|+.+.  .|+    ...+..+..++.+.|++++|+..|+++.+.  .|+.    ..+..
T Consensus         6 ~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~P~~~~~~~a~~~   83 (225)
T 2yhc_A            6 EIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYVMYM   83 (225)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCcHHHHHHH
Confidence            34445556666777777777776665  122    235566666677777777777777776654  2221    13333


Q ss_pred             HHHHHhc------------------cCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCCCCC
Q 007573          411 LLSACGH------------------AGKVNESMDLFELMVKVYGIIPS-SEHYTCLVDILSRAGQLEKAWQITQGMPFEA  471 (597)
Q Consensus       411 ll~~~~~------------------~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p  471 (597)
                      +..++..                  .|+.++|...|+.+.+.   .|+ ...+.....+.    ......          
T Consensus        84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~P~~~~a~~a~~~l~----~~~~~~----------  146 (225)
T 2yhc_A           84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG---YPNSQYTTDATKRLV----FLKDRL----------  146 (225)
T ss_dssp             HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT---CTTCTTHHHHHHHHH----HHHHHH----------
T ss_pred             HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH---CcCChhHHHHHHHHH----HHHHHH----------
Confidence            3333332                  34555555555555432   122 11111111000    000000          


Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC---chHHHHHHHHHhcCCcHHHHHHHHHHHhCCCc
Q 007573          472 DTGVWGSLLAACVINLNVELGELAAKKMRELDPQNS---AVYVMLSNLYAAAGMWRDVTRVRLLMKEQGVT  539 (597)
Q Consensus       472 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  539 (597)
                       ......+...+...|++++|+..++++++..|+++   .++..++.+|.+.|++++|.+.++.+...+..
T Consensus       147 -~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~  216 (225)
T 2yhc_A          147 -AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSN  216 (225)
T ss_dssp             -HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSC
T ss_pred             -HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC
Confidence             00113456678899999999999999999999975   67899999999999999999999999887653

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=99.09  E-value=3.4e-08  Score=91.61  Aligned_cols=40  Identities=8%  Similarity=-0.118  Sum_probs=21.8

Q ss_pred             HHhcCCHHHHHHHHhhcCCCChh-HHHHHHHHHHHcCChhH
Q 007573          248 FCKVGMLENARLLFERIQPKDCV-SFNAMIAGYAQNGVAEE  287 (597)
Q Consensus       248 ~~~~g~~~~A~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~  287 (597)
                      ..-.|.+..++.-...+.+.+.. .-.-+.++|...|+++.
T Consensus        23 ~fy~G~yq~~i~e~~~~~~~~~~~~~~~~~Rs~iAlg~~~~   63 (310)
T 3mv2_B           23 NYYTGNFVQCLQEIEKFSKVTDNTLLFYKAKTLLALGQYQS   63 (310)
T ss_dssp             HHTTTCHHHHTHHHHTSSCCCCHHHHHHHHHHHHHTTCCCC
T ss_pred             HHHhhHHHHHHHHHHhcCccchHHHHHHHHHHHHHcCCCcc
Confidence            33467777777655555443322 23334566776666653

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=99.07  E-value=1.4e-08  Score=94.19  Aligned_cols=160  Identities=11%  Similarity=0.023  Sum_probs=103.8

Q ss_pred             HHHHHHHhcCCHHHHHHHHhccCC-----CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-----ChHHHHHHHH
Q 007573          344 AVITMYSRCGGILDSELAFRQIHS-----PNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDP-----DGITFLSLLS  413 (597)
Q Consensus       344 ~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-----~~~~~~~ll~  413 (597)
                      .+..++...|++++|++++.+...     .+...+..++..+.+.|+.+.|.+.+++|.+.  .|     +..+...+..
T Consensus       105 ~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~--~~d~~~~~d~~l~~Lae  182 (310)
T 3mv2_B          105 LLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA--IEDTVSGDNEMILNLAE  182 (310)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CccccccchHHHHHHHH
Confidence            344455555666666666555421     24456667777888888888888888888764  55     3455555554


Q ss_pred             H--Hhc--cCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCCC-----------CC-CHHHHH
Q 007573          414 A--CGH--AGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMPF-----------EA-DTGVWG  477 (597)
Q Consensus       414 ~--~~~--~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----------~p-~~~~~~  477 (597)
                      +  ...  .++..+|..+|+++...   .|+...-..+..++.+.|++++|++.++.+..           .| ++.++.
T Consensus       183 a~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~La  259 (310)
T 3mv2_B          183 SYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLA  259 (310)
T ss_dssp             HHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHH
T ss_pred             HHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHH
Confidence            4  222  33788888888887643   34433333444477888888888888875431           24 455665


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchH
Q 007573          478 SLLAACVINLNVELGELAAKKMRELDPQNSAVY  510 (597)
Q Consensus       478 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~  510 (597)
                      .++......|+  +|.++++++.+..|++|.+.
T Consensus       260 N~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~  290 (310)
T 3mv2_B          260 NQITLALMQGL--DTEDLTNQLVKLDHEHAFIK  290 (310)
T ss_dssp             HHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHH
T ss_pred             HHHHHHHHhCh--HHHHHHHHHHHhCCCChHHH
Confidence            66666666676  78889999999999887654

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.07  E-value=2.8e-09  Score=99.08  Aligned_cols=187  Identities=9%  Similarity=-0.010  Sum_probs=131.7

Q ss_pred             cccHHHHHHHHHHhcCCHHHHHHHHhccC--CC-C---hhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCC-hHHHH
Q 007573          338 NVSVCNAVITMYSRCGGILDSELAFRQIH--SP-N---LVSWNTIIAAFAQHGHYEKALIFFSQMGLNGF-DPD-GITFL  409 (597)
Q Consensus       338 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~-~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~-~~~~~  409 (597)
                      +...+..+...+.+.|++++|...|+.+.  .| +   ...+..+..+|...|++++|+..|++..+... .|. ...+.
T Consensus        14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~   93 (261)
T 3qky_A           14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY   93 (261)
T ss_dssp             SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence            34455566677777888888888888775  22 3   45677778888888888888888888876521 122 34566


Q ss_pred             HHHHHHhc--------cCcHHHHHHHHHHhHHhcCCCCChH-HH--------------HHHHHHHhhcCCHHHHHHHHhh
Q 007573          410 SLLSACGH--------AGKVNESMDLFELMVKVYGIIPSSE-HY--------------TCLVDILSRAGQLEKAWQITQG  466 (597)
Q Consensus       410 ~ll~~~~~--------~g~~~~a~~~~~~~~~~~~~~p~~~-~~--------------~~l~~~~~~~g~~~~A~~~~~~  466 (597)
                      .+..++..        .|++++|...|+++.+.+.-.+... ..              ..+...|.+.|++++|...+++
T Consensus        94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  173 (261)
T 3qky_A           94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEA  173 (261)
T ss_dssp             HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence            66677777        8888888888888877532222211 11              5668889999999999999988


Q ss_pred             CC-CCCC----HHHHHHHHHHHHhc----------CCHHHHHHHHHHHHhcCCCCCc---hHHHHHHHHHhcCCcH
Q 007573          467 MP-FEAD----TGVWGSLLAACVIN----------LNVELGELAAKKMRELDPQNSA---VYVMLSNLYAAAGMWR  524 (597)
Q Consensus       467 ~~-~~p~----~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~  524 (597)
                      +. ..|+    ...+..++.++...          |++++|+..++++++..|+++.   +...+..++...|+++
T Consensus       174 ~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~~~~~~~~~~  249 (261)
T 3qky_A          174 VFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEELYTRARQRLTELE  249 (261)
T ss_dssp             HHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHhh
Confidence            75 3343    34677788888765          8999999999999999999864   3444555554444443

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.06  E-value=3.1e-09  Score=100.12  Aligned_cols=177  Identities=10%  Similarity=-0.087  Sum_probs=140.5

Q ss_pred             HHHHHHHHhccCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHh
Q 007573          355 ILDSELAFRQIHSPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMVKV  434 (597)
Q Consensus       355 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~  434 (597)
                      .+.....+....+.+...+..+...+...|++++|+..|++..+.. +-+...+..+...+...|++++|...++.+...
T Consensus       102 ~~~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~  180 (287)
T 3qou_A          102 EEAIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ  180 (287)
T ss_dssp             HHHHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG
T ss_pred             HHHHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh
Confidence            3344455555555566677788888899999999999999988752 334677888889999999999999999988653


Q ss_pred             cCCCCChHHHH-HHHHHHhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--Cch
Q 007573          435 YGIIPSSEHYT-CLVDILSRAGQLEKAWQITQGMP-FEA-DTGVWGSLLAACVINLNVELGELAAKKMRELDPQN--SAV  509 (597)
Q Consensus       435 ~~~~p~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~--~~~  509 (597)
                         .|+..... .....+.+.++.++|.+.+++.. ..| +...+..+...+...|++++|+..++++++.+|++  ..+
T Consensus       181 ---~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a  257 (287)
T 3qou_A          181 ---DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQT  257 (287)
T ss_dssp             ---GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHH
T ss_pred             ---hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchH
Confidence               45544332 23334667788888888887765 344 67789999999999999999999999999999998  889


Q ss_pred             HHHHHHHHHhcCCcHHHHHHHHHHHh
Q 007573          510 YVMLSNLYAAAGMWRDVTRVRLLMKE  535 (597)
Q Consensus       510 ~~~l~~~~~~~g~~~~A~~~~~~~~~  535 (597)
                      +..++.++...|+.++|...+++...
T Consensus       258 ~~~l~~~~~~~g~~~~a~~~~r~al~  283 (287)
T 3qou_A          258 RXTFQEILAALGTGDALASXYRRQLY  283 (287)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence            99999999999999999999887654

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.05  E-value=6.3e-09  Score=85.14  Aligned_cols=132  Identities=17%  Similarity=0.248  Sum_probs=107.8

Q ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHH
Q 007573          372 SWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDIL  451 (597)
Q Consensus       372 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~  451 (597)
                      .|..+...+...|++++|..+++++.+.. +.+...+..+...+...|++++|...++++.+.  .+.+...+..++..+
T Consensus         3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~   79 (136)
T 2fo7_A            3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAY   79 (136)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH--CCCchHHHHHHHHHH
Confidence            56677788888899999999998887653 345667777888888889999999999988764  234567788888999


Q ss_pred             hhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 007573          452 SRAGQLEKAWQITQGMP--FEADTGVWGSLLAACVINLNVELGELAAKKMRELDPQN  506 (597)
Q Consensus       452 ~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~  506 (597)
                      ...|++++|.+.++++.  .+.+...+..++..+...|++++|...++++++.+|++
T Consensus        80 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~  136 (136)
T 2fo7_A           80 YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS  136 (136)
T ss_dssp             HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTTC
T ss_pred             HHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCCC
Confidence            99999999999998765  33467788889999999999999999999999988863

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.05  E-value=4.4e-09  Score=99.45  Aligned_cols=221  Identities=13%  Similarity=0.003  Sum_probs=134.3

Q ss_pred             CHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChhHHHHHHHHhHHC----CCCCC-HHHHHHHHHHHhccchhHHHHHHH
Q 007573          253 MLENARLLFERIQPKDCVSFNAMIAGYAQNGVAEEALRLFSGMIKM----DMQPD-DATLVSVFTACSALQLLNEGRQSH  327 (597)
Q Consensus       253 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~  327 (597)
                      ++++|...|++.           +..|...|++++|+..|.+..+.    |-.++ ..++..+..++...|++++|...+
T Consensus        32 ~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~  100 (292)
T 1qqe_A           32 KFEEAADLCVQA-----------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSL  100 (292)
T ss_dssp             HHHHHHHHHHHH-----------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             cHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            477777766554           66777888888888888776542    11111 223444444444444444444444


Q ss_pred             HHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHhccCCCChhhHHHHHHHHHHc-CCHHHHHHHHHHHHHCCCC-CC-
Q 007573          328 VLVIRNGFEANVSVCNAVITMYSRCGGILDSELAFRQIHSPNLVSWNTIIAAFAQH-GHYEKALIFFSQMGLNGFD-PD-  404 (597)
Q Consensus       328 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~-p~-  404 (597)
                      +..++.               +...|+...+           ..+++.+...|... |++++|+..|++..+.... .+ 
T Consensus       101 ~~Al~l---------------~~~~g~~~~~-----------a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~  154 (292)
T 1qqe_A          101 ENAIQI---------------FTHRGQFRRG-----------ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSV  154 (292)
T ss_dssp             HHHHHH---------------HHHTTCHHHH-----------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHH---------------HHHcCCHHHH-----------HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCCh
Confidence            433321               1111111111           23567777788885 8888888888887653110 01 


Q ss_pred             ---hHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCCh-----HHHHHHHHHHhhcCCHHHHHHHHhhCC-CCCCHH-
Q 007573          405 ---GITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSS-----EHYTCLVDILSRAGQLEKAWQITQGMP-FEADTG-  474 (597)
Q Consensus       405 ---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~-  474 (597)
                         ..++..+...+...|++++|...|+++.+...-.+..     ..|..+..++...|++++|...+++.. ..|+.. 
T Consensus       155 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~  234 (292)
T 1qqe_A          155 ALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFAD  234 (292)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC------
T ss_pred             HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC
Confidence               3467778888888899999999998887642212221     156777888888999999999988865 444321 


Q ss_pred             -----HHHHHHHHHH--hcCCHHHHHHHHHHHHhcCCCCCchH
Q 007573          475 -----VWGSLLAACV--INLNVELGELAAKKMRELDPQNSAVY  510 (597)
Q Consensus       475 -----~~~~l~~~~~--~~g~~~~a~~~~~~~~~~~p~~~~~~  510 (597)
                           .+..++.++.  ..+++++|+..|+++.+++|.....+
T Consensus       235 ~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~~~  277 (292)
T 1qqe_A          235 SRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITIL  277 (292)
T ss_dssp             ---HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHHHH
Confidence                 3444555554  45678888888888888877654333

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.04  E-value=6e-10  Score=93.62  Aligned_cols=120  Identities=10%  Similarity=0.005  Sum_probs=67.5

Q ss_pred             HHHhccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCH
Q 007573          413 SACGHAGKVNESMDLFELMVKVYGIIPS-SEHYTCLVDILSRAGQLEKAWQITQGMP-FEA-DTGVWGSLLAACVINLNV  489 (597)
Q Consensus       413 ~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~  489 (597)
                      ..+...|++++|++.++...   ...|+ ...+-.+...|.+.|++++|++.|++.. ..| +..+|..++.++...|++
T Consensus         5 ~~~~~~~~~e~ai~~~~~a~---~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~   81 (150)
T 4ga2_A            5 SMRRSKADVERYIASVQGST---PSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENT   81 (150)
T ss_dssp             --CCCHHHHHHHHHHHHHHS---CSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHcChHHHHHHHHHHhc---ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCch
Confidence            33445555666665555443   22232 3334455666666666666666666544 333 455666666666666666


Q ss_pred             HHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcHHHHHH-HHHHHh
Q 007573          490 ELGELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRV-RLLMKE  535 (597)
Q Consensus       490 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~  535 (597)
                      ++|+..++++++++|+++.++..++.+|.+.|++++|.+. +++..+
T Consensus        82 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~  128 (150)
T 4ga2_A           82 DKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAK  128 (150)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence            6666666666666666666666666666666666555443 355443

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.03  E-value=2.6e-10  Score=95.85  Aligned_cols=139  Identities=11%  Similarity=0.017  Sum_probs=105.8

Q ss_pred             HHHHcCCHHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHhhcCC
Q 007573          379 AFAQHGHYEKALIFFSQMGLNGFDPD-GITFLSLLSACGHAGKVNESMDLFELMVKVYGIIP-SSEHYTCLVDILSRAGQ  456 (597)
Q Consensus       379 ~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~  456 (597)
                      .+...|++++|++.+.+....  .|+ ...+..+...|.+.|++++|.+.|++..+.   .| +...|..+..+|.+.|+
T Consensus         6 ~~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~---~p~~~~a~~~lg~~~~~~~~   80 (150)
T 4ga2_A            6 MRRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV---QERDPKAHRFLGLLYELEEN   80 (150)
T ss_dssp             -CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCc
Confidence            344556777777777776542  333 334556777788888888888888887754   34 47788888888888888


Q ss_pred             HHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHH-HHHHHHhcCCCCCchHHHHHHHHHhcCC
Q 007573          457 LEKAWQITQGMP-FEA-DTGVWGSLLAACVINLNVELGEL-AAKKMRELDPQNSAVYVMLSNLYAAAGM  522 (597)
Q Consensus       457 ~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~-~~~~~~~~~p~~~~~~~~l~~~~~~~g~  522 (597)
                      +++|...|++.. ..| +..+|..+...+...|++++|.. .++++++++|+++.+|.....++...|+
T Consensus        81 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~  149 (150)
T 4ga2_A           81 TDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE  149 (150)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred             hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence            888888888765 455 57789999999999999877665 4699999999999999999999888875

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.02  E-value=3.8e-08  Score=87.99  Aligned_cols=162  Identities=13%  Similarity=0.035  Sum_probs=135.9

Q ss_pred             CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccC----cHHHHHHHHHHhHHhcCCCCChH
Q 007573          367 SPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAG----KVNESMDLFELMVKVYGIIPSSE  442 (597)
Q Consensus       367 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g----~~~~a~~~~~~~~~~~~~~p~~~  442 (597)
                      ..++.++..+...|...+++++|+++|++..+.|   +...+..+...+.. +    +.++|.+.|++..+.    -++.
T Consensus        15 ~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~----g~~~   86 (212)
T 3rjv_A           15 AGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEA----GSKS   86 (212)
T ss_dssp             TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHT----TCHH
T ss_pred             CCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHC----CCHH
Confidence            3567778888888888999999999999998865   56677777777877 6    899999999998763    3577


Q ss_pred             HHHHHHHHHhh----cCCHHHHHHHHhhCC-CCCC---HHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCchH
Q 007573          443 HYTCLVDILSR----AGQLEKAWQITQGMP-FEAD---TGVWGSLLAACVI----NLNVELGELAAKKMRELDPQNSAVY  510 (597)
Q Consensus       443 ~~~~l~~~~~~----~g~~~~A~~~~~~~~-~~p~---~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~  510 (597)
                      .+..|...|..    .+++++|.+.+++.. ..|+   +..+..|...|..    .++.++|+..++++.+. |.++..+
T Consensus        87 a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~  165 (212)
T 3rjv_A           87 GEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAE  165 (212)
T ss_dssp             HHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHH
T ss_pred             HHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHH
Confidence            88888888887    889999999999876 4443   7788899999888    88999999999999998 6677889


Q ss_pred             HHHHHHHHhc-C-----CcHHHHHHHHHHHhCC
Q 007573          511 VMLSNLYAAA-G-----MWRDVTRVRLLMKEQG  537 (597)
Q Consensus       511 ~~l~~~~~~~-g-----~~~~A~~~~~~~~~~~  537 (597)
                      ..|+.+|... |     ++++|.+++++..+.|
T Consensus       166 ~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g  198 (212)
T 3rjv_A          166 YWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG  198 (212)
T ss_dssp             HHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence            9999999875 3     8999999999998876

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.02  E-value=8.4e-10  Score=117.33  Aligned_cols=168  Identities=12%  Similarity=-0.012  Sum_probs=88.9

Q ss_pred             hccchhHHHHHHHHHHH--------HhCCCCcccHHHHHHHHHHhcCCHHHHHHHHhccC---CCChhhHHHHHHHHHHc
Q 007573          315 SALQLLNEGRQSHVLVI--------RNGFEANVSVCNAVITMYSRCGGILDSELAFRQIH---SPNLVSWNTIIAAFAQH  383 (597)
Q Consensus       315 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~  383 (597)
                      ...|+.++|...++.++        +.. +.+...+..+...|.+.|++++|+..|++..   +.+...|..+...+...
T Consensus       402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~  480 (681)
T 2pzi_A          402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT  480 (681)
T ss_dssp             TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred             ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence            45566666666666655        221 3344555555566666666666666665554   34445555555566666


Q ss_pred             CCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHH
Q 007573          384 GHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQI  463 (597)
Q Consensus       384 g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~  463 (597)
                      |++++|++.|++..+.. +-+...+..+..++.+.|++++ .+.|+++.+.  -+.+...|..+..+|.+.|++++|.+.
T Consensus       481 g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~  556 (681)
T 2pzi_A          481 GDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWST--NDGVISAAFGLARARSAEGDRVGAVRT  556 (681)
T ss_dssp             TCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHh--CCchHHHHHHHHHHHHHcCCHHHHHHH
Confidence            66666666666655432 2234455555555566666666 6566555542  112244555556666666666666666


Q ss_pred             HhhCC-CCCC-HHHHHHHHHHHHhcC
Q 007573          464 TQGMP-FEAD-TGVWGSLLAACVINL  487 (597)
Q Consensus       464 ~~~~~-~~p~-~~~~~~l~~~~~~~g  487 (597)
                      +++.. ..|+ ...+..+..++...+
T Consensus       557 ~~~al~l~P~~~~a~~~~~~~~~~~~  582 (681)
T 2pzi_A          557 LDEVPPTSRHFTTARLTSAVTLLSGR  582 (681)
T ss_dssp             HHTSCTTSTTHHHHHHHHHHHTC---
T ss_pred             HHhhcccCcccHHHHHHHHHHHHccC
Confidence            65554 4444 334555555544433

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=98.99  E-value=3.1e-09  Score=88.79  Aligned_cols=102  Identities=9%  Similarity=-0.052  Sum_probs=90.7

Q ss_pred             CCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHH
Q 007573          436 GIIPS-SEHYTCLVDILSRAGQLEKAWQITQGMP-FEA-DTGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVM  512 (597)
Q Consensus       436 ~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~  512 (597)
                      .+.|+ ...+..+...+.+.|++++|.+.|++.. ..| +...|..+..++...|++++|+..|+++++++|+++.++..
T Consensus        30 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~  109 (151)
T 3gyz_A           30 AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFH  109 (151)
T ss_dssp             CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHH
Confidence            44554 5677788888999999999999998876 444 67899999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCcHHHHHHHHHHHhCC
Q 007573          513 LSNLYAAAGMWRDVTRVRLLMKEQG  537 (597)
Q Consensus       513 l~~~~~~~g~~~~A~~~~~~~~~~~  537 (597)
                      ++.+|...|++++|.+.|++..+..
T Consensus       110 lg~~~~~lg~~~eA~~~~~~al~l~  134 (151)
T 3gyz_A          110 TGQCQLRLKAPLKAKECFELVIQHS  134 (151)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            9999999999999999999998754

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=98.99  E-value=3e-09  Score=92.17  Aligned_cols=76  Identities=7%  Similarity=-0.137  Sum_probs=62.9

Q ss_pred             HHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--CchHHHHHHHHHhcCCcHHHHHHHHHHHh
Q 007573          460 AWQITQGMP-FEA-DTGVWGSLLAACVINLNVELGELAAKKMRELDPQN--SAVYVMLSNLYAAAGMWRDVTRVRLLMKE  535 (597)
Q Consensus       460 A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  535 (597)
                      |...+++.. ..| +...+..+...+...|++++|+..++++++.+|++  +..+..++.++...|+.++|...|++...
T Consensus        93 a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~  172 (176)
T 2r5s_A           93 ELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQLY  172 (176)
T ss_dssp             HHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence            455555443 345 57788889999999999999999999999999875  56899999999999999999999988754

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=98.97  E-value=3.5e-09  Score=88.55  Aligned_cols=102  Identities=15%  Similarity=0.036  Sum_probs=88.1

Q ss_pred             CCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC-CC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHH
Q 007573          436 GIIPS-SEHYTCLVDILSRAGQLEKAWQITQGMP-FE-ADTGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVM  512 (597)
Q Consensus       436 ~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~  512 (597)
                      .+.|+ ...+..+...+.+.|++++|...|++.. .. .+...|..+..++...|++++|+..++++++++|+++.++..
T Consensus        15 ~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~   94 (148)
T 2vgx_A           15 EISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFH   94 (148)
T ss_dssp             TCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHH
T ss_pred             cCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHH
Confidence            34443 5567778888999999999999998865 34 467789999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCcHHHHHHHHHHHhCC
Q 007573          513 LSNLYAAAGMWRDVTRVRLLMKEQG  537 (597)
Q Consensus       513 l~~~~~~~g~~~~A~~~~~~~~~~~  537 (597)
                      ++.+|...|++++|.+.+++..+..
T Consensus        95 lg~~~~~~g~~~~A~~~~~~al~~~  119 (148)
T 2vgx_A           95 AAECLLQXGELAEAESGLFLAQELI  119 (148)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHC
Confidence            9999999999999999999987754

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=98.97  E-value=6.7e-09  Score=97.41  Aligned_cols=200  Identities=13%  Similarity=0.089  Sum_probs=116.7

Q ss_pred             hhHHHHHHHHHHHcCChhHHHHHHHHhHHC------CCCCCHHHHHHHHHHHhccchhHHHHHHHHHHHHhCCCCcccHH
Q 007573          269 CVSFNAMIAGYAQNGVAEEALRLFSGMIKM------DMQPDDATLVSVFTACSALQLLNEGRQSHVLVIRNGFEANVSVC  342 (597)
Q Consensus       269 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  342 (597)
                      ..++..+...|...|++++|+..+++..+.      +-.|.                                  ...++
T Consensus        43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~----------------------------------~~~~~   88 (283)
T 3edt_B           43 ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPA----------------------------------VAATL   88 (283)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHH----------------------------------HHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchH----------------------------------HHHHH
Confidence            346677777777777777777777776643      11111                                  12234


Q ss_pred             HHHHHHHHhcCCHHHHHHHHhccC-----------CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHC------CCCCC-
Q 007573          343 NAVITMYSRCGGILDSELAFRQIH-----------SPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLN------GFDPD-  404 (597)
Q Consensus       343 ~~l~~~~~~~g~~~~A~~~~~~~~-----------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~-  404 (597)
                      ..+...|...|++++|...+++..           +....++..+...+...|++++|++.++++.+.      +-.|+ 
T Consensus        89 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  168 (283)
T 3edt_B           89 NNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNV  168 (283)
T ss_dssp             HHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHH
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHH
Confidence            444444445555555544444332           112345666777777788888888888777653      11222 


Q ss_pred             hHHHHHHHHHHhccCcHHHHHHHHHHhHHhc------CCCCC-hHHHHHHHHHHhhc------CCHHHHHHHHhhCC-CC
Q 007573          405 GITFLSLLSACGHAGKVNESMDLFELMVKVY------GIIPS-SEHYTCLVDILSRA------GQLEKAWQITQGMP-FE  470 (597)
Q Consensus       405 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~------~~~p~-~~~~~~l~~~~~~~------g~~~~A~~~~~~~~-~~  470 (597)
                      ..++..+..++...|++++|..+++++.+..      ...+. ...+..+...+...      ..+.++...++... ..
T Consensus       169 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (283)
T 3edt_B          169 AKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDS  248 (283)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCC
Confidence            4567777888888888888888888876531      11222 23333333333332      23455555555554 22


Q ss_pred             CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 007573          471 AD-TGVWGSLLAACVINLNVELGELAAKKMREL  502 (597)
Q Consensus       471 p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  502 (597)
                      |+ ..++..+...+...|++++|...++++++.
T Consensus       249 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  281 (283)
T 3edt_B          249 PTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN  281 (283)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            32 447888899999999999999999999875

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=98.97  E-value=7.1e-09  Score=83.92  Aligned_cols=99  Identities=11%  Similarity=0.052  Sum_probs=67.7

Q ss_pred             CCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHH
Q 007573          437 IIPS-SEHYTCLVDILSRAGQLEKAWQITQGMP-FEA-DTGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVML  513 (597)
Q Consensus       437 ~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l  513 (597)
                      +.|+ ...+......|.+.|++++|++.|++.. ..| +...|..+..++...|++++|+..++++++++|+++.+|..+
T Consensus         8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l   87 (126)
T 4gco_A            8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRK   87 (126)
T ss_dssp             CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence            3344 3455556666777777777777776654 233 456677777777777777777777777777777777777777


Q ss_pred             HHHHHhcCCcHHHHHHHHHHHh
Q 007573          514 SNLYAAAGMWRDVTRVRLLMKE  535 (597)
Q Consensus       514 ~~~~~~~g~~~~A~~~~~~~~~  535 (597)
                      +.+|...|++++|++.|++..+
T Consensus        88 g~~~~~~~~~~~A~~~~~~al~  109 (126)
T 4gco_A           88 AACLVAMREWSKAQRAYEDALQ  109 (126)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHH
Confidence            7777777777777777777665

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=98.96  E-value=9.1e-09  Score=107.44  Aligned_cols=160  Identities=13%  Similarity=-0.013  Sum_probs=125.2

Q ss_pred             cCCHHHHHHHHhccC---CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHH
Q 007573          352 CGGILDSELAFRQIH---SPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLF  428 (597)
Q Consensus       352 ~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~  428 (597)
                      .|++++|...+++..   +.+...|..+...+...|++++|++.+++..+.. +.+...+..+..++...|++++|.+.+
T Consensus         2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~   80 (568)
T 2vsy_A            2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL   80 (568)
T ss_dssp             -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            478899999998876   4557789999999999999999999999998753 335778888999999999999999999


Q ss_pred             HHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhc---CCHHHHHHHHHHHHhcC
Q 007573          429 ELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMP-FEA-DTGVWGSLLAACVIN---LNVELGELAAKKMRELD  503 (597)
Q Consensus       429 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~---g~~~~a~~~~~~~~~~~  503 (597)
                      ++..+.  .+.+...+..+..+|.+.|++++|.+.+++.. ..| +...+..+...+...   |+.++|...++++++.+
T Consensus        81 ~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~  158 (568)
T 2vsy_A           81 QQASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG  158 (568)
T ss_dssp             HHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred             HHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence            999875  23347889999999999999999999998875 344 577889999999999   99999999999999999


Q ss_pred             CCCCchHHHHH
Q 007573          504 PQNSAVYVMLS  514 (597)
Q Consensus       504 p~~~~~~~~l~  514 (597)
                      |.+...+..++
T Consensus       159 p~~~~~~~~l~  169 (568)
T 2vsy_A          159 VGAVEPFAFLS  169 (568)
T ss_dssp             CCCSCHHHHTT
T ss_pred             CcccChHHHhC
Confidence            99988887776

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=98.94  E-value=2.4e-08  Score=89.09  Aligned_cols=156  Identities=10%  Similarity=0.053  Sum_probs=77.7

Q ss_pred             HHHHHHhcCCHHHHHHHHhccCC--C-ChhhHHH----------------HHHHHHHcCCHHHHHHHHHHHHHCCCCCCh
Q 007573          345 VITMYSRCGGILDSELAFRQIHS--P-NLVSWNT----------------IIAAFAQHGHYEKALIFFSQMGLNGFDPDG  405 (597)
Q Consensus       345 l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~----------------li~~~~~~g~~~~A~~~~~~m~~~g~~p~~  405 (597)
                      ....+...|++++|+..|++...  | +...|..                +...|...|++++|+..|++..+.. +-+.
T Consensus        10 ~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~   88 (208)
T 3urz_A           10 KVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA-PNNV   88 (208)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCH
Confidence            33445566666666666666542  2 2334444                5555555666666666666555432 2234


Q ss_pred             HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHhhcCC--HHHHHHHHhhCCCCCCH--HHHHHHH
Q 007573          406 ITFLSLLSACGHAGKVNESMDLFELMVKVYGIIP-SSEHYTCLVDILSRAGQ--LEKAWQITQGMPFEADT--GVWGSLL  480 (597)
Q Consensus       406 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~p~~--~~~~~l~  480 (597)
                      ..+..+..++...|++++|...|+++.+.   .| +...+..+...|...|.  .+.+...++... .|+.  ..+..+.
T Consensus        89 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~g  164 (208)
T 3urz_A           89 DCLEACAEMQVCRGQEKDALRMYEKILQL---EADNLAANIFLGNYYYLTAEQEKKKLETDYKKLS-SPTKMQYARYRDG  164 (208)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh-CCCchhHHHHHHH
Confidence            45555555555666666666666655542   23 24455555555544432  233344444433 2222  2233334


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhcCCC
Q 007573          481 AACVINLNVELGELAAKKMRELDPQ  505 (597)
Q Consensus       481 ~~~~~~g~~~~a~~~~~~~~~~~p~  505 (597)
                      .++...|++++|+..+++++++.|+
T Consensus       165 ~~~~~~~~~~~A~~~~~~al~l~P~  189 (208)
T 3urz_A          165 LSKLFTTRYEKARNSLQKVILRFPS  189 (208)
T ss_dssp             HHHHHHHTHHHHHHHHHHHTTTSCC
T ss_pred             HHHHHccCHHHHHHHHHHHHHhCCC
Confidence            4444555566666666666665554

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=98.90  E-value=1.7e-08  Score=89.99  Aligned_cols=161  Identities=11%  Similarity=-0.006  Sum_probs=117.7

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-hHHHHH----------------HHHHHhccCcHHHHHHHHHHhHHhc
Q 007573          373 WNTIIAAFAQHGHYEKALIFFSQMGLNGFDPD-GITFLS----------------LLSACGHAGKVNESMDLFELMVKVY  435 (597)
Q Consensus       373 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~----------------ll~~~~~~g~~~~a~~~~~~~~~~~  435 (597)
                      +......+...|++++|+..|++..+.  .|+ ...+..                +..++.+.|++++|...|++..+. 
T Consensus         7 ~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-   83 (208)
T 3urz_A            7 MLQKVSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK-   83 (208)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-
Confidence            344455677889999999999998875  454 445666                788888999999999999988864 


Q ss_pred             CCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCC--HHHHHHHHHHHHhcCCCCCchHH
Q 007573          436 GIIPSSEHYTCLVDILSRAGQLEKAWQITQGMP-FEA-DTGVWGSLLAACVINLN--VELGELAAKKMRELDPQNSAVYV  511 (597)
Q Consensus       436 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~--~~~a~~~~~~~~~~~p~~~~~~~  511 (597)
                       -+-+...+..+..+|...|++++|...|++.. ..| +..+|..++..+...|+  .+.+...++++....|. ...+.
T Consensus        84 -~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~a~~  161 (208)
T 3urz_A           84 -APNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKM-QYARY  161 (208)
T ss_dssp             -CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHH-HHHHH
T ss_pred             -CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCch-hHHHH
Confidence             12347888889999999999999999998876 445 56788888888765543  44556666665432221 23456


Q ss_pred             HHHHHHHhcCCcHHHHHHHHHHHhCCC
Q 007573          512 MLSNLYAAAGMWRDVTRVRLLMKEQGV  538 (597)
Q Consensus       512 ~l~~~~~~~g~~~~A~~~~~~~~~~~~  538 (597)
                      .++.++...|++++|+..+++..+..+
T Consensus       162 ~~g~~~~~~~~~~~A~~~~~~al~l~P  188 (208)
T 3urz_A          162 RDGLSKLFTTRYEKARNSLQKVILRFP  188 (208)
T ss_dssp             HHHHHHHHHHTHHHHHHHHHHHTTTSC
T ss_pred             HHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence            678888889999999999999887554

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=98.89  E-value=2.9e-08  Score=103.60  Aligned_cols=149  Identities=14%  Similarity=0.008  Sum_probs=75.4

Q ss_pred             CCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHhhcCCHHHHHH
Q 007573          384 GHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIP-SSEHYTCLVDILSRAGQLEKAWQ  462 (597)
Q Consensus       384 g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~  462 (597)
                      |++++|++.+++..+.. +.+...+..+...+...|++++|.+.+++..+   ..| +...+..+..+|...|++++|.+
T Consensus         3 g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~lg~~~~~~g~~~~A~~   78 (568)
T 2vsy_A            3 ADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLA---LHPGHPEAVARLGRVRWTQQRHAEAAV   78 (568)
T ss_dssp             -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT---TSTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence            45566666666555431 22244555555566666666666666665553   223 25555566666666666666666


Q ss_pred             HHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhc---CCcHHHHHHHHHHHhC
Q 007573          463 ITQGMP-FEA-DTGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAA---GMWRDVTRVRLLMKEQ  536 (597)
Q Consensus       463 ~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~  536 (597)
                      .+++.. ..| +...+..+...+...|++++|+..++++++.+|+++..+..++.++...   |++++|.+.+++..+.
T Consensus        79 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~  157 (568)
T 2vsy_A           79 LLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ  157 (568)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence            665543 222 3445556666666666666666666666666666666666666666666   6666666666555443

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=98.89  E-value=1.5e-07  Score=95.36  Aligned_cols=219  Identities=7%  Similarity=-0.083  Sum_probs=135.3

Q ss_pred             HHHHHHHhccC---CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhH
Q 007573          356 LDSELAFRQIH---SPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMV  432 (597)
Q Consensus       356 ~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~  432 (597)
                      +.+..+|+++.   +.+...|-..+.-+.+.|+.++|..++++....   |....+......+...+.      +++.+.
T Consensus       196 ~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~---P~~~~l~~~y~~~~e~~~------~~~~l~  266 (493)
T 2uy1_A          196 SRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM---SDGMFLSLYYGLVMDEEA------VYGDLK  266 (493)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHTTCTH------HHHHHH
T ss_pred             HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCcHHHHHHHHhhcchhH------HHHHHH
Confidence            34556776665   456778888888888999999999999999976   443322221111212221      123332


Q ss_pred             HhcC--------CCC---ChHHHHHHHHHHhhcCCHHHHHHHHhhCCCC-CCHHHHHHHHHHHH-hcCCHHHHHHHHHHH
Q 007573          433 KVYG--------IIP---SSEHYTCLVDILSRAGQLEKAWQITQGMPFE-ADTGVWGSLLAACV-INLNVELGELAAKKM  499 (597)
Q Consensus       433 ~~~~--------~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-p~~~~~~~l~~~~~-~~g~~~~a~~~~~~~  499 (597)
                      +.+-        ..+   ....|...+..+.+.|..+.|.++|++...+ .+..+|......-. ..++.+.|..+++.+
T Consensus       267 ~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~a  346 (493)
T 2uy1_A          267 RKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIELGNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSG  346 (493)
T ss_dssp             HHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHH
T ss_pred             HHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHH
Confidence            2210        001   1345667777777888999999999887422 23445543333322 234799999999999


Q ss_pred             HhcCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHhCCCccCCCeeEEEECCEEEEEEeCCCCCcchHHHHHHHHHHHHH
Q 007573          500 RELDPQNSAVYVMLSNLYAAAGMWRDVTRVRLLMKEQGVTKQCAYSWIEIGNKVHYFLGGDMSHPCIDKIHLELKRASVQ  579 (597)
Q Consensus       500 ~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~  579 (597)
                      ++..|+++..+...++.....|+.+.|..+|+++.+     .. .-|.       .+..=...|+....+...+++....
T Consensus       347 l~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~~k-----~~-~lw~-------~~~~fE~~~G~~~~~r~v~~~~~~~  413 (493)
T 2uy1_A          347 LLKHPDSTLLKEEFFLFLLRIGDEENARALFKRLEK-----TS-RMWD-------SMIEYEFMVGSMELFRELVDQKMDA  413 (493)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHSCC-----BH-HHHH-------HHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred             HHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----HH-HHHH-------HHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            998888877777788888899999999999998621     00 0010       0111112366777777788888877


Q ss_pred             Hhhc--CCccchhcccccC
Q 007573          580 MKSV--DDFVEIATSWSSF  596 (597)
Q Consensus       580 ~~~~--~~~~~~~~~~~~~  596 (597)
                      ++..  ++......+|..|
T Consensus       414 ~~~~~~~~~~~~~~~~~~f  432 (493)
T 2uy1_A          414 IKADAILPPLPPREHNVQM  432 (493)
T ss_dssp             HHTTCCBCCCCCC--CCCC
T ss_pred             hcccccCCcccccccHHHH
Confidence            7643  3344555666654

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=98.88  E-value=1.6e-08  Score=81.75  Aligned_cols=114  Identities=13%  Similarity=0.049  Sum_probs=92.0

Q ss_pred             CCCC-hHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCC-CHHHHH
Q 007573          401 FDPD-GITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMP-FEA-DTGVWG  477 (597)
Q Consensus       401 ~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~  477 (597)
                      +.|+ ...+......+.+.|++++|.+.|++..+.  -+.+...|..+..+|.+.|++++|++.+++.. ..| +...|.
T Consensus         8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~   85 (126)
T 4gco_A            8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKR--DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYI   85 (126)
T ss_dssp             CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHH
Confidence            3444 345666777888888888888888888764  23357788888888888999999988888765 344 577899


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 007573          478 SLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNL  516 (597)
Q Consensus       478 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~  516 (597)
                      .++.++...|++++|+..|+++++++|+++.++..+..+
T Consensus        86 ~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~  124 (126)
T 4gco_A           86 RKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNC  124 (126)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence            999999999999999999999999999999888877765

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=98.87  E-value=3e-08  Score=82.28  Aligned_cols=97  Identities=13%  Similarity=-0.055  Sum_probs=84.9

Q ss_pred             hHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 007573          441 SEHYTCLVDILSRAGQLEKAWQITQGMP-FEA-DTGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYA  518 (597)
Q Consensus       441 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~  518 (597)
                      ...+..+...+.+.|++++|...|++.. ..| +...|..+..++...|++++|+..++++++++|+++..+..++.+|.
T Consensus        18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~   97 (142)
T 2xcb_A           18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL   97 (142)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence            4556667788889999999999998765 344 67788999999999999999999999999999999999999999999


Q ss_pred             hcCCcHHHHHHHHHHHhCC
Q 007573          519 AAGMWRDVTRVRLLMKEQG  537 (597)
Q Consensus       519 ~~g~~~~A~~~~~~~~~~~  537 (597)
                      ..|++++|.+.+++..+..
T Consensus        98 ~~g~~~~A~~~~~~al~~~  116 (142)
T 2xcb_A           98 QLGDLDGAESGFYSARALA  116 (142)
T ss_dssp             HTTCHHHHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHhC
Confidence            9999999999999987644

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=98.87  E-value=9.5e-08  Score=101.56  Aligned_cols=168  Identities=10%  Similarity=-0.060  Sum_probs=118.0

Q ss_pred             HhcCCHHHHHHHHhccC-----------CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhcc
Q 007573          350 SRCGGILDSELAFRQIH-----------SPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHA  418 (597)
Q Consensus       350 ~~~g~~~~A~~~~~~~~-----------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~  418 (597)
                      ...|++++|++.+++..           +.+...|..+...+...|++++|++.|++..+.. +-+...+..+..++...
T Consensus       402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~  480 (681)
T 2pzi_A          402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLT  480 (681)
T ss_dssp             TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHH
T ss_pred             ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHc
Confidence            45677777777776654           4455677777777777888888888887777642 33456677777777777


Q ss_pred             CcHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHH
Q 007573          419 GKVNESMDLFELMVKVYGIIP-SSEHYTCLVDILSRAGQLEKAWQITQGMP-FEA-DTGVWGSLLAACVINLNVELGELA  495 (597)
Q Consensus       419 g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~  495 (597)
                      |++++|.+.|+++.+.   .| +...+..+..+|.+.|++++ .+.|++.. ..| +...|..+..++...|++++|+..
T Consensus       481 g~~~~A~~~~~~al~l---~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~  556 (681)
T 2pzi_A          481 GDYDSATKHFTEVLDT---FPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRT  556 (681)
T ss_dssp             TCHHHHHHHHHHHHHH---STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHH
Confidence            8888888888777654   23 36667777777778888777 77777654 334 456777777778888888888888


Q ss_pred             HHHHHhcCCCCCchHHHHHHHHHhcCC
Q 007573          496 AKKMRELDPQNSAVYVMLSNLYAAAGM  522 (597)
Q Consensus       496 ~~~~~~~~p~~~~~~~~l~~~~~~~g~  522 (597)
                      ++++++++|++..++..++.++...|+
T Consensus       557 ~~~al~l~P~~~~a~~~~~~~~~~~~~  583 (681)
T 2pzi_A          557 LDEVPPTSRHFTTARLTSAVTLLSGRS  583 (681)
T ss_dssp             HHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred             HHhhcccCcccHHHHHHHHHHHHccCC
Confidence            888888888777777777777766444

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=98.86  E-value=6.8e-08  Score=86.38  Aligned_cols=127  Identities=10%  Similarity=-0.025  Sum_probs=66.8

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHh
Q 007573          373 WNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILS  452 (597)
Q Consensus       373 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~  452 (597)
                      +..+...+...|++++|++.|++..    .|+...+..+..++...|++++|...++...+..  +.+...+..+..+|.
T Consensus         9 ~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~lg~~~~   82 (213)
T 1hh8_A            9 LWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD--KHLAVAYFQRGMLYY   82 (213)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--ccchHHHHHHHHHHH
Confidence            3444555556666666666665542    4455556666666666666666666666555431  223445555555555


Q ss_pred             hcCCHHHHHHHHhhCC-CCC-CH----------------HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 007573          453 RAGQLEKAWQITQGMP-FEA-DT----------------GVWGSLLAACVINLNVELGELAAKKMRELDPQ  505 (597)
Q Consensus       453 ~~g~~~~A~~~~~~~~-~~p-~~----------------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~  505 (597)
                      ..|++++|.+.+++.. ..| +.                ..+..+..++...|++++|...++++++.+|+
T Consensus        83 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~  153 (213)
T 1hh8_A           83 QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE  153 (213)
T ss_dssp             HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred             HcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcc
Confidence            5555555555554432 111 11                34455555555555555555555555555543

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=98.85  E-value=4.1e-08  Score=93.54  Aligned_cols=181  Identities=10%  Similarity=0.038  Sum_probs=126.1

Q ss_pred             HHHHHhcCCHHHHHHHHhccCC-----CC----hhhHHHHHHHHHHcCCHHHHHHHHHHHHHCC---CCCC--hHHHHHH
Q 007573          346 ITMYSRCGGILDSELAFRQIHS-----PN----LVSWNTIIAAFAQHGHYEKALIFFSQMGLNG---FDPD--GITFLSL  411 (597)
Q Consensus       346 ~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---~~p~--~~~~~~l  411 (597)
                      ...|...|++++|...|.+...     .+    ..+|+.+...|...|++++|+..|++..+.-   -.|.  ..++..+
T Consensus        43 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~l  122 (307)
T 2ifu_A           43 AVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRA  122 (307)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            3456666777777666655431     11    3367777888888899999998888765421   1222  3567778


Q ss_pred             HHHHhccCcHHHHHHHHHHhHHhcCCCCC----hHHHHHHHHHHhhcCCHHHHHHHHhhCC-C---CCC----HHHHHHH
Q 007573          412 LSACGHAGKVNESMDLFELMVKVYGIIPS----SEHYTCLVDILSRAGQLEKAWQITQGMP-F---EAD----TGVWGSL  479 (597)
Q Consensus       412 l~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~---~p~----~~~~~~l  479 (597)
                      ...+.. |++++|...|++......-..+    ..++..+...|.+.|++++|...+++.. .   .++    ...+..+
T Consensus       123 g~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  201 (307)
T 2ifu_A          123 GKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQ  201 (307)
T ss_dssp             HHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHH
Confidence            888888 9999999999988764221111    4578888999999999999999998765 1   122    2256667


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhcCCCCCch-----HHHHHHHHHhcCCcHHHHHH
Q 007573          480 LAACVINLNVELGELAAKKMRELDPQNSAV-----YVMLSNLYAAAGMWRDVTRV  529 (597)
Q Consensus       480 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~-----~~~l~~~~~~~g~~~~A~~~  529 (597)
                      +..+...|++++|+..+++++ ++|.....     ...++.++ ..|+.+.+.++
T Consensus       202 g~~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~  254 (307)
T 2ifu_A          202 VLVQLHRADYVAAQKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV  254 (307)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence            777888899999999999999 88875432     34455555 56776666553

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=98.85  E-value=2.8e-08  Score=94.68  Aligned_cols=196  Identities=9%  Similarity=-0.032  Sum_probs=147.3

Q ss_pred             cchhHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHhccCCCChhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 007573          317 LQLLNEGRQSHVLVIRNGFEANVSVCNAVITMYSRCGGILDSELAFRQIHSPNLVSWNTIIAAFAQHGHYEKALIFFSQM  396 (597)
Q Consensus       317 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m  396 (597)
                      .|++++|..++++..+..-. .         .+...++++.|...|..           ....|...|++++|.+.|.+.
T Consensus         4 ~~~~~eA~~~~~~a~k~~~~-~---------~~~~~~~~~~A~~~~~~-----------a~~~~~~~g~~~~A~~~~~~a   62 (307)
T 2ifu_A            4 AQKISEAHEHIAKAEKYLKT-S---------FMKWKPDYDSAASEYAK-----------AAVAFKNAKQLEQAKDAYLQE   62 (307)
T ss_dssp             HHHHHHHHHHHHHHHHHHCC-C---------SSSCSCCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHccc-c---------ccCCCCCHHHHHHHHHH-----------HHHHHHHcCCHHHHHHHHHHH
Confidence            56677777777776654211 1         01114778888877654           356788899999999999887


Q ss_pred             HHC----CCCCC-hHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC----hHHHHHHHHHHhhcCCHHHHHHHHhhC
Q 007573          397 GLN----GFDPD-GITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPS----SEHYTCLVDILSRAGQLEKAWQITQGM  467 (597)
Q Consensus       397 ~~~----g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~  467 (597)
                      .+.    |-.+. ..+|..+...|...|++++|...|++..+.+.-..+    ..++..+..+|.. |++++|++.+++.
T Consensus        63 l~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~A  141 (307)
T 2ifu_A           63 AEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQA  141 (307)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHH
Confidence            653    21111 347888889999999999999999988764321111    4577888999988 9999999999876


Q ss_pred             C-CC---CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC------chHHHHHHHHHhcCCcHHHHHHHHHH
Q 007573          468 P-FE---AD----TGVWGSLLAACVINLNVELGELAAKKMRELDPQNS------AVYVMLSNLYAAAGMWRDVTRVRLLM  533 (597)
Q Consensus       468 ~-~~---p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~A~~~~~~~  533 (597)
                      . ..   .+    ..++..+...+...|++++|+..+++++++.|++.      ..+..++.++...|++++|.+.+++.
T Consensus       142 l~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~a  221 (307)
T 2ifu_A          142 AAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRES  221 (307)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            4 11   11    45788899999999999999999999999866543      36677888899999999999999998


Q ss_pred             H
Q 007573          534 K  534 (597)
Q Consensus       534 ~  534 (597)
                      .
T Consensus       222 l  222 (307)
T 2ifu_A          222 Y  222 (307)
T ss_dssp             T
T ss_pred             h
Confidence            7

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=98.81  E-value=9.5e-08  Score=89.89  Aligned_cols=134  Identities=10%  Similarity=0.030  Sum_probs=113.4

Q ss_pred             CCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCCCHHHHHHHH
Q 007573          402 DPDGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMP-FEADTGVWGSLL  480 (597)
Q Consensus       402 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~  480 (597)
                      +.+...+..+...+...|++++|...|+++.+.  -+-+...+..+..+|.+.|++++|...++++. ..|+........
T Consensus       114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~  191 (287)
T 3qou_A          114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQL--SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVA  191 (287)
T ss_dssp             CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHH
T ss_pred             CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHH
Confidence            334566777888889999999999999999874  23347889999999999999999999999987 567765443333


Q ss_pred             H-HHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHhCC
Q 007573          481 A-ACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRVRLLMKEQG  537 (597)
Q Consensus       481 ~-~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  537 (597)
                      . .+...++.+.|+..++++++.+|+++..+..++.+|...|++++|.+.++++.+..
T Consensus       192 ~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~  249 (287)
T 3qou_A          192 QIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXD  249 (287)
T ss_dssp             HHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcc
Confidence            3 36777888899999999999999999999999999999999999999999998754

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=98.80  E-value=1.7e-06  Score=87.75  Aligned_cols=344  Identities=10%  Similarity=-0.011  Sum_probs=185.1

Q ss_pred             CChHHHHHHHccCC--CCChhhHHHHHHHHHcCCC-hHHHHHHHccCC------CCCchhHHHHHHHHHh----CCChhH
Q 007573          126 DRIDDAFDYFQAMP--ERNTATYNAMISGFLKHGR-LEEATRLFEQMP------RRNVISYTAMLDGFMK----KGEVDK  192 (597)
Q Consensus       126 ~~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~------~~~~~~~~~li~~~~~----~g~~~~  192 (597)
                      ++++.+..+|++..  .|+...|...+....+.++ .+....+|+...      ..+...|...+..+..    +|+.+.
T Consensus        28 ~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~  107 (493)
T 2uy1_A           28 KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEK  107 (493)
T ss_dssp             TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHH
T ss_pred             CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHH
Confidence            67777777777766  3566677766666555542 233444444322      1244556555554432    345566


Q ss_pred             HHHHHHhcccCCcchHHHHHHHHH---cCCChHHHHHHHhhcCCCCCCchHHHHHHHHHHhcCCHHHHHHHHhhcC----
Q 007573          193 ARALSDYMSFKNVVSWTVMITGYV---KNERFCEARELFYRMPDYDKNVFVVTAMITGFCKVGMLENARLLFERIQ----  265 (597)
Q Consensus       193 A~~~~~~m~~~~~~~~~~ll~~~~---~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----  265 (597)
                      +..+|++........+..+-..|.   .......+.+++...                   .+.+..|..+++.+.    
T Consensus       108 vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~-------------------~~~y~~ar~~y~~~~~~~~  168 (493)
T 2uy1_A          108 IRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDT-------------------LPIFQSSFQRYQQIQPLIR  168 (493)
T ss_dssp             HHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHH-------------------hHHHHHHHHHHHHHHHHHh
Confidence            666666663311111111111111   111111122111110                   011222222222211    


Q ss_pred             CCChhHHHHHHHHHHHcCC-------hhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhccchhHHHHHHHHHHHHhCCCCc
Q 007573          266 PKDCVSFNAMIAGYAQNGV-------AEEALRLFSGMIKMDMQPDDATLVSVFTACSALQLLNEGRQSHVLVIRNGFEAN  338 (597)
Q Consensus       266 ~~~~~~~~~li~~~~~~g~-------~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~  338 (597)
                      ..+...|...+.--...+.       .+.+..+|++++... +-+...|...+.-+...|+.+.|..+++..++.  |.+
T Consensus       169 ~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~  245 (493)
T 2uy1_A          169 GWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDG  245 (493)
T ss_dssp             TCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCS
T ss_pred             hccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCc
Confidence            1133455554443222211       234566777777643 334555666666666777888888888888777  444


Q ss_pred             ccHHHHHHHHHHhcCCHHHH-HHHHhccC------------CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCh
Q 007573          339 VSVCNAVITMYSRCGGILDS-ELAFRQIH------------SPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDG  405 (597)
Q Consensus       339 ~~~~~~l~~~~~~~g~~~~A-~~~~~~~~------------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~  405 (597)
                      ...+..    |....+.++. ..+.+...            ......|...+....+.++.+.|..+|.+. ... ..+.
T Consensus       246 ~~l~~~----y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~  319 (493)
T 2uy1_A          246 MFLSLY----YGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGP  319 (493)
T ss_dssp             SHHHHH----HHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCH
T ss_pred             HHHHHH----HHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCCh
Confidence            433332    2221111111 11111110            011245667777777788899999999988 321 2334


Q ss_pred             HHHHHHHHHHhc-cCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 007573          406 ITFLSLLSACGH-AGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMPFEADTGVWGSLLAACV  484 (597)
Q Consensus       406 ~~~~~ll~~~~~-~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~  484 (597)
                      ..|......-.. .++.+.|..+|+...+.++  -++..+...++.....|+.+.|..+|+++.  .....|...+..-.
T Consensus       320 ~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~--~~~~~~~~yid~e~~~~~~~~aR~l~er~~--k~~~lw~~~~~fE~  395 (493)
T 2uy1_A          320 HVFIYCAFIEYYATGSRATPYNIFSSGLLKHP--DSTLLKEEFFLFLLRIGDEENARALFKRLE--KTSRMWDSMIEYEF  395 (493)
T ss_dssp             HHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHSC--CBHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCChHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHHHHHHHHHHHHH
Confidence            444332222222 3368999999999988642  235556667888888999999999999984  35678888888878


Q ss_pred             hcCCHHHHHHHHHHHHh
Q 007573          485 INLNVELGELAAKKMRE  501 (597)
Q Consensus       485 ~~g~~~~a~~~~~~~~~  501 (597)
                      ..|+.+.+..+++++.+
T Consensus       396 ~~G~~~~~r~v~~~~~~  412 (493)
T 2uy1_A          396 MVGSMELFRELVDQKMD  412 (493)
T ss_dssp             HHSCHHHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHH
Confidence            88999999998888874

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.79  E-value=8.5e-07  Score=83.69  Aligned_cols=161  Identities=7%  Similarity=-0.029  Sum_probs=123.3

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHCC-CCCChH----HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC----hHHHH
Q 007573          375 TIIAAFAQHGHYEKALIFFSQMGLNG-FDPDGI----TFLSLLSACGHAGKVNESMDLFELMVKVYGIIPS----SEHYT  445 (597)
Q Consensus       375 ~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~----~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~  445 (597)
                      ..+..+...|++++|..++++..+.. ..|+..    .+..+...+...|++++|...++.+.+...-.++    ..+++
T Consensus        80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~  159 (293)
T 3u3w_A           80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN  159 (293)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence            34667888999999999999988642 122221    2334666777888999999999998874222233    33688


Q ss_pred             HHHHHHhhcCCHHHHHHHHhhCC-----CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC------CchH
Q 007573          446 CLVDILSRAGQLEKAWQITQGMP-----FEAD----TGVWGSLLAACVINLNVELGELAAKKMRELDPQN------SAVY  510 (597)
Q Consensus       446 ~l~~~~~~~g~~~~A~~~~~~~~-----~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~  510 (597)
                      .+...|...|++++|...++++.     .+.+    ..++..++..|...|++++|+..+++++++.+..      ..+|
T Consensus       160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~  239 (293)
T 3u3w_A          160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY  239 (293)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence            89999999999999999988764     1112    2378889999999999999999999999865432      5678


Q ss_pred             HHHHHHHHhcCC-cHHHHHHHHHHHh
Q 007573          511 VMLSNLYAAAGM-WRDVTRVRLLMKE  535 (597)
Q Consensus       511 ~~l~~~~~~~g~-~~~A~~~~~~~~~  535 (597)
                      ..++.+|.+.|+ +++|.+.+++...
T Consensus       240 ~~lg~~~~~~g~~~~~A~~~~~~Al~  265 (293)
T 3u3w_A          240 YQRGECLRKLEYEEAEIEDAYKKASF  265 (293)
T ss_dssp             HHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence            999999999995 6999999998865

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=98.79  E-value=5.4e-08  Score=84.14  Aligned_cols=156  Identities=8%  Similarity=-0.037  Sum_probs=118.3

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHhccC---CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHH-Hh
Q 007573          341 VCNAVITMYSRCGGILDSELAFRQIH---SPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSA-CG  416 (597)
Q Consensus       341 ~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~-~~  416 (597)
                      ....+...+.+.|++++|...|++..   +.+...+..+...+...|++++|+..+++....  .|+.......... +.
T Consensus         8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~   85 (176)
T 2r5s_A            8 QLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNSYKSLIAKLELH   85 (176)
T ss_dssp             THHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChHHHHHHHHHHHH
Confidence            44556677888999999999999887   566778899999999999999999999987654  3444333222211 11


Q ss_pred             ccCcHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCCC---HHHHHHHHHHHHhcCCHHH
Q 007573          417 HAGKVNESMDLFELMVKVYGIIP-SSEHYTCLVDILSRAGQLEKAWQITQGMP-FEAD---TGVWGSLLAACVINLNVEL  491 (597)
Q Consensus       417 ~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~---~~~~~~l~~~~~~~g~~~~  491 (597)
                      ..+...+|...+++..+.   .| +...+..+..++...|++++|...++++. ..|+   ...+..++..+...|+.++
T Consensus        86 ~~~~~~~a~~~~~~al~~---~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~  162 (176)
T 2r5s_A           86 QQAAESPELKRLEQELAA---NPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNA  162 (176)
T ss_dssp             HHHTSCHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCH
T ss_pred             hhcccchHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCc
Confidence            222223467888887764   34 47888899999999999999999998765 4554   5588899999999999999


Q ss_pred             HHHHHHHHHh
Q 007573          492 GELAAKKMRE  501 (597)
Q Consensus       492 a~~~~~~~~~  501 (597)
                      |...|++++.
T Consensus       163 A~~~y~~al~  172 (176)
T 2r5s_A          163 IASKYRRQLY  172 (176)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999998764

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=98.79  E-value=6.6e-07  Score=83.86  Aligned_cols=218  Identities=11%  Similarity=0.063  Sum_probs=99.2

Q ss_pred             CChhHHHHHHHHhHHCCCCCCHHH-HHHHHHHHhccc--hhHHHHHHHHHHHHhCCCCcccHHHHHHHHH----HhcCCH
Q 007573          283 GVAEEALRLFSGMIKMDMQPDDAT-LVSVFTACSALQ--LLNEGRQSHVLVIRNGFEANVSVCNAVITMY----SRCGGI  355 (597)
Q Consensus       283 g~~~~A~~~~~~m~~~g~~p~~~~-~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~g~~  355 (597)
                      ...++|+.++..++..  .|+..| |+.--..+...+  +++++...++.++..+ +-+..+|+.-...+    ...+  
T Consensus        47 e~s~~aL~~t~~~L~~--nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~--  121 (306)
T 3dra_A           47 EYSERALHITELGINE--LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNN--  121 (306)
T ss_dssp             CCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTT--
T ss_pred             CCCHHHHHHHHHHHHH--CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhcc--
Confidence            3345788888777764  454433 333333444444  5666666666665554 23333333333222    2220  


Q ss_pred             HHHHHHHhccCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHH--HHHHHHHHhHH
Q 007573          356 LDSELAFRQIHSPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVN--ESMDLFELMVK  433 (597)
Q Consensus       356 ~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~--~a~~~~~~~~~  433 (597)
                                                ..+++++++++++++.+.. +-+..+|..-...+.+.|.++  ++.+.++.+.+
T Consensus       122 --------------------------~~~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~  174 (306)
T 3dra_A          122 --------------------------NDFDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVID  174 (306)
T ss_dssp             --------------------------TCCCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred             --------------------------ccCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHH
Confidence                                      0034444455444444331 223333433333333444444  44444444443


Q ss_pred             hcCCCCChHHHHHHHHHHhhcCC------HHHHHHHHhhCC--CCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHhcC-
Q 007573          434 VYGIIPSSEHYTCLVDILSRAGQ------LEKAWQITQGMP--FEADTGVWGSLLAACVINLNV-ELGELAAKKMRELD-  503 (597)
Q Consensus       434 ~~~~~p~~~~~~~l~~~~~~~g~------~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~~-  503 (597)
                      .  -+-+-..|+.-..++.+.|+      ++++++.++++.  .+-|...|+-+...+.+.|+. +....+..++.+++ 
T Consensus       175 ~--d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~  252 (306)
T 3dra_A          175 T--DLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEK  252 (306)
T ss_dssp             H--CTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGG
T ss_pred             h--CCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccC
Confidence            2  11223333333333333333      445555444433  222444555555555444442 22334444444443 


Q ss_pred             --CCCCchHHHHHHHHHhcCCcHHHHHHHHHHH
Q 007573          504 --PQNSAVYVMLSNLYAAAGMWRDVTRVRLLMK  534 (597)
Q Consensus       504 --p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  534 (597)
                        |.++.++..++.+|.+.|+.++|.++++.+.
T Consensus       253 ~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~  285 (306)
T 3dra_A          253 DQVTSSFALETLAKIYTQQKKYNESRTVYDLLK  285 (306)
T ss_dssp             TEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence              4445555555555555555555555555554

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=98.78  E-value=1e-07  Score=81.23  Aligned_cols=127  Identities=6%  Similarity=-0.070  Sum_probs=96.4

Q ss_pred             HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHH
Q 007573          407 TFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMP--FEADTGVWGSLLAACV  484 (597)
Q Consensus       407 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~  484 (597)
                      .+..+...+...|++++|...|+...+.  .+.+...+..++..+...|++++|.+.+++..  .+.+...|..++.++.
T Consensus        15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~   92 (166)
T 1a17_A           15 ELKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM   92 (166)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence            3555556666777777777777776653  12346677777777778888888888777654  3345678888899999


Q ss_pred             hcCCHHHHHHHHHHHHhcCCCCCchHHHHH--HHHHhcCCcHHHHHHHHHHHh
Q 007573          485 INLNVELGELAAKKMRELDPQNSAVYVMLS--NLYAAAGMWRDVTRVRLLMKE  535 (597)
Q Consensus       485 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~--~~~~~~g~~~~A~~~~~~~~~  535 (597)
                      ..|++++|...++++++.+|.++..+..+.  ..+...|++++|.+.++....
T Consensus        93 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~  145 (166)
T 1a17_A           93 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS  145 (166)
T ss_dssp             HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence            999999999999999999999977775444  448889999999999987754

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.76  E-value=2.4e-07  Score=87.47  Aligned_cols=164  Identities=7%  Similarity=-0.088  Sum_probs=123.0

Q ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-h----HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCC--CCC--hH
Q 007573          372 SWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPD-G----ITFLSLLSACGHAGKVNESMDLFELMVKVYGI--IPS--SE  442 (597)
Q Consensus       372 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~--~p~--~~  442 (597)
                      .+...+..+...|++++|.+.+.+..+...... .    ..+..+...+...|++++|...+++..+...-  .+.  ..
T Consensus        77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~  156 (293)
T 2qfc_A           77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY  156 (293)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence            445566778889999999999988876532211 1    22344556677888999999999888753111  111  45


Q ss_pred             HHHHHHHHHhhcCCHHHHHHHHhhCC----CCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--C----C
Q 007573          443 HYTCLVDILSRAGQLEKAWQITQGMP----FEAD-----TGVWGSLLAACVINLNVELGELAAKKMRELDPQ--N----S  507 (597)
Q Consensus       443 ~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~--~----~  507 (597)
                      +++.+...|...|++++|...+++..    ..|+     ..++..++..|...|++++|+..+++++++.++  +    .
T Consensus       157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~  236 (293)
T 2qfc_A          157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG  236 (293)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence            78889999999999999999997754    1222     257888999999999999999999999976432  1    5


Q ss_pred             chHHHHHHHHHhcCCcHHH-HHHHHHHHh
Q 007573          508 AVYVMLSNLYAAAGMWRDV-TRVRLLMKE  535 (597)
Q Consensus       508 ~~~~~l~~~~~~~g~~~~A-~~~~~~~~~  535 (597)
                      .+|..++.+|.+.|++++| ...+++...
T Consensus       237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~  265 (293)
T 2qfc_A          237 QLYYQRGECLRKLEYEEAEIEDAYKKASF  265 (293)
T ss_dssp             HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence            6788999999999999999 777887654

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=98.76  E-value=2e-07  Score=84.23  Aligned_cols=184  Identities=11%  Similarity=-0.059  Sum_probs=131.0

Q ss_pred             HHHHHHHHHHHhccchhHHHHHHHHHHHHhCCCC--cccHHHHHHHHHHhcCCHHHHHHHHhccC--CCC-hh---hHHH
Q 007573          304 DATLVSVFTACSALQLLNEGRQSHVLVIRNGFEA--NVSVCNAVITMYSRCGGILDSELAFRQIH--SPN-LV---SWNT  375 (597)
Q Consensus       304 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~-~~---~~~~  375 (597)
                      ...+......+...|++++|...++.+++.....  ....+..+..+|.+.|++++|+..|+++.  .|+ ..   ++..
T Consensus         4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~   83 (225)
T 2yhc_A            4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM   83 (225)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence            3344556667888999999999999999875322  23567888999999999999999999876  233 22   4555


Q ss_pred             HHHHHHH------------------cCCHHHHHHHHHHHHHCCCCCChH-HHHHHHHHHhccCcHHHHHHHHHHhHHhcC
Q 007573          376 IIAAFAQ------------------HGHYEKALIFFSQMGLNGFDPDGI-TFLSLLSACGHAGKVNESMDLFELMVKVYG  436 (597)
Q Consensus       376 li~~~~~------------------~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~  436 (597)
                      +..++..                  .|++++|+..|+++.+.  .|+.. .......          ...+...+.    
T Consensus        84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~----------l~~~~~~~~----  147 (225)
T 2yhc_A           84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKR----------LVFLKDRLA----  147 (225)
T ss_dssp             HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHH----------HHHHHHHHH----
T ss_pred             HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHH----------HHHHHHHHH----
Confidence            5555554                  57899999999999875  45532 2221111          001111111    


Q ss_pred             CCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 007573          437 IIPSSEHYTCLVDILSRAGQLEKAWQITQGMP-FEADT----GVWGSLLAACVINLNVELGELAAKKMRELDPQNSA  508 (597)
Q Consensus       437 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~  508 (597)
                           .....+...|.+.|++++|...++++. ..|+.    ..+..++.++.+.|+.++|+..++++....|++..
T Consensus       148 -----~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~  219 (225)
T 2yhc_A          148 -----KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLE  219 (225)
T ss_dssp             -----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCC
T ss_pred             -----HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchh
Confidence                 122356788899999999999998876 34442    46888899999999999999999999998888643

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=98.76  E-value=6.9e-08  Score=83.48  Aligned_cols=120  Identities=7%  Similarity=0.059  Sum_probs=79.2

Q ss_pred             hccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC-C-CCCHHHHHHHHHH-HHhcCCH--H
Q 007573          416 GHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMP-F-EADTGVWGSLLAA-CVINLNV--E  490 (597)
Q Consensus       416 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~p~~~~~~~l~~~-~~~~g~~--~  490 (597)
                      ...|++++|...++...+.  .+.+...+..+...|...|++++|...+++.. . +.+...+..+..+ +...|++  +
T Consensus        21 ~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~   98 (177)
T 2e2e_A           21 ASQQNPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTA   98 (177)
T ss_dssp             C-----CCCCHHHHHHHHH--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred             hhccCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchH
Confidence            3455666666666666553  12345666667777777777777777776654 2 2345566667766 6677777  7


Q ss_pred             HHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHhCC
Q 007573          491 LGELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRVRLLMKEQG  537 (597)
Q Consensus       491 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  537 (597)
                      +|+..++++++.+|.++.++..++.+|...|++++|.+.++++.+..
T Consensus        99 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  145 (177)
T 2e2e_A           99 QTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLN  145 (177)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence            78888888888888777777778888888888888888877776644

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=98.73  E-value=6e-06  Score=77.32  Aligned_cols=238  Identities=7%  Similarity=-0.049  Sum_probs=162.6

Q ss_pred             HHHHHhcCC-HHHHHHHHhhcC---CCChhHHHHHHHHHHHcC--ChhHHHHHHHHhHHCCCCCCHH-HHHHHHHHHhcc
Q 007573          245 ITGFCKVGM-LENARLLFERIQ---PKDCVSFNAMIAGYAQNG--VAEEALRLFSGMIKMDMQPDDA-TLVSVFTACSAL  317 (597)
Q Consensus       245 ~~~~~~~g~-~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~  317 (597)
                      +.+..+.|. .++|+..++.+.   +.+..+|+.-...+...|  ++++++..++.+....  |... .|+.--..+   
T Consensus        39 ~~a~~~~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n--Pk~y~aW~~R~~iL---  113 (306)
T 3dra_A           39 LLALMKAEEYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN--EKNYQIWNYRQLII---  113 (306)
T ss_dssp             HHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC--TTCCHHHHHHHHHH---
T ss_pred             HHHHHHcCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC--cccHHHHHHHHHHH---
Confidence            333444554 478999998865   346678999888888888  9999999999999864  4332 232211111   


Q ss_pred             chhHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHhccC---CCChhhHHHHHHHHHHcCCHH--HHHHH
Q 007573          318 QLLNEGRQSHVLVIRNGFEANVSVCNAVITMYSRCGGILDSELAFRQIH---SPNLVSWNTIIAAFAQHGHYE--KALIF  392 (597)
Q Consensus       318 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~--~A~~~  392 (597)
                                ..+...               ....++++++..+++.+.   +.+..+|+.-...+.+.|.++  ++++.
T Consensus       114 ----------~~~~~~---------------l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~  168 (306)
T 3dra_A          114 ----------GQIMEL---------------NNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSF  168 (306)
T ss_dssp             ----------HHHHHH---------------TTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHH
T ss_pred             ----------HHHHHh---------------ccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHH
Confidence                      000000               000123344444444443   566777777777777778777  89999


Q ss_pred             HHHHHHCCCCCChHHHHHHHHHHhccCc------HHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHH-HHHHHh
Q 007573          393 FSQMGLNGFDPDGITFLSLLSACGHAGK------VNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEK-AWQITQ  465 (597)
Q Consensus       393 ~~~m~~~g~~p~~~~~~~ll~~~~~~g~------~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~-A~~~~~  465 (597)
                      ++++.+.. .-|...|+.-...+.+.+.      ++++++.++.++..  -+-|...|+.+..++.+.|+..+ +..+..
T Consensus       169 ~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~--~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~  245 (306)
T 3dra_A          169 VDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVK--CPQNPSTWNYLLGIHERFDRSITQLEEFSL  245 (306)
T ss_dssp             HHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCCGGGGHHHHH
T ss_pred             HHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHh--CCCCccHHHHHHHHHHhcCCChHHHHHHHH
Confidence            99998764 3456667666666666665      88999999888864  23457888888888888887544 555666


Q ss_pred             hCC-C----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-cCCCCCchHHHHHH
Q 007573          466 GMP-F----EADTGVWGSLLAACVINLNVELGELAAKKMRE-LDPQNSAVYVMLSN  515 (597)
Q Consensus       466 ~~~-~----~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~p~~~~~~~~l~~  515 (597)
                      ++. .    ..++..+..++..+.+.|+.++|+++++.+.+ .+|.....+...+.
T Consensus       246 ~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~Dpir~~yW~~~~~  301 (306)
T 3dra_A          246 QFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSKYNPIRSNFWDYQIS  301 (306)
T ss_dssp             TTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred             HHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhccChHHHHHHHHHHh
Confidence            654 2    34677899999999999999999999999996 79987766655443

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=98.73  E-value=1.1e-07  Score=76.93  Aligned_cols=97  Identities=12%  Similarity=0.003  Sum_probs=82.8

Q ss_pred             hHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 007573          441 SEHYTCLVDILSRAGQLEKAWQITQGMP--FEADTGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYA  518 (597)
Q Consensus       441 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~  518 (597)
                      ...+..+...+.+.|++++|.+.|++..  .+.+...|..+..++...|++++|+..++++++++|+++.++..++.++.
T Consensus         4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~   83 (126)
T 3upv_A            4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI   83 (126)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence            3456667778888888888888888765  33467788999999999999999999999999999999999999999999


Q ss_pred             hcCCcHHHHHHHHHHHhCC
Q 007573          519 AAGMWRDVTRVRLLMKEQG  537 (597)
Q Consensus       519 ~~g~~~~A~~~~~~~~~~~  537 (597)
                      ..|++++|.+.+++..+..
T Consensus        84 ~~~~~~~A~~~~~~al~~~  102 (126)
T 3upv_A           84 AVKEYASALETLDAARTKD  102 (126)
T ss_dssp             HTTCHHHHHHHHHHHHHHH
T ss_pred             HHhCHHHHHHHHHHHHHhC
Confidence            9999999999999887643

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.73  E-value=2e-07  Score=74.73  Aligned_cols=114  Identities=18%  Similarity=0.191  Sum_probs=83.0

Q ss_pred             HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHH
Q 007573          406 ITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMP--FEADTGVWGSLLAAC  483 (597)
Q Consensus       406 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~  483 (597)
                      ..+..+...+...|++++|.+.++++.+.  .+.+...+..++..+.+.|++++|..+++++.  .+.+...+..+...+
T Consensus        10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~   87 (125)
T 1na0_A           10 EAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY   87 (125)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence            45555666666677777777777766653  12345666677777777777777777776654  334566788888888


Q ss_pred             HhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcC
Q 007573          484 VINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAG  521 (597)
Q Consensus       484 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g  521 (597)
                      ...|++++|...++++++.+|.++..+..++.++...|
T Consensus        88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  125 (125)
T 1na0_A           88 YKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG  125 (125)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred             HHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence            89999999999999999999988888888888776654

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=98.72  E-value=1.5e-07  Score=76.57  Aligned_cols=116  Identities=10%  Similarity=-0.031  Sum_probs=79.0

Q ss_pred             hHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHH
Q 007573          405 GITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMP--FEADTGVWGSLLAA  482 (597)
Q Consensus       405 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~  482 (597)
                      ...+..+...+...|++++|...+++..+.  .+.+...+..+...|...|++++|.+.+++..  .+.+...+..+..+
T Consensus        16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~   93 (133)
T 2lni_A           16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKR--NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAA   93 (133)
T ss_dssp             HHHHHHHHHHHHHTTCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence            344555555555566666666666655432  12235556666666666666666666666544  23356678888888


Q ss_pred             HHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCC
Q 007573          483 CVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGM  522 (597)
Q Consensus       483 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~  522 (597)
                      +...|++++|+..++++++.+|.+...+..++.++...|+
T Consensus        94 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~  133 (133)
T 2lni_A           94 LEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN  133 (133)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred             HHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence            8889999999999999999999888888888888877664

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.72  E-value=2.2e-08  Score=93.98  Aligned_cols=192  Identities=7%  Similarity=-0.056  Sum_probs=128.5

Q ss_pred             ccHHHHHHHHHHhcCCHHHHHHHHhccC---CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHH
Q 007573          339 VSVCNAVITMYSRCGGILDSELAFRQIH---SPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSAC  415 (597)
Q Consensus       339 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~  415 (597)
                      ...+..+...+.+.|++++|+..|++..   +.+...|..+...|...|++++|+..+++..+.. +.+...+..+..++
T Consensus         4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~   82 (281)
T 2c2l_A            4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQ   82 (281)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence            3455666777778888888888887665   4467788888888889999999999998887652 33466788888888


Q ss_pred             hccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 007573          416 GHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMPFEADTGVWGSLLAACVINLNVELGELA  495 (597)
Q Consensus       416 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~  495 (597)
                      ...|++++|...|+.+.+...-.+  ..+...+....+..+...... .......++......+...  ..|+.++|++.
T Consensus        83 ~~~g~~~~A~~~~~~al~l~p~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~l~~l--~~~~~~~A~~~  157 (281)
T 2c2l_A           83 LEMESYDEAIANLQRAYSLAKEQR--LNFGDDIPSALRIAKKKRWNS-IEERRIHQESELHSYLTRL--IAAERERELEE  157 (281)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHTT--CCCCSHHHHHHHHHHHHHHHH-HHHTCCCCCCHHHHHHHHH--HHHHHHHHHTT
T ss_pred             HHcCCHHHHHHHHHHHHHhCccch--hhHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHHHHH--HHHHHHHHHHH
Confidence            899999999999888775421111  111111222212111111112 2222333444444444332  26899999999


Q ss_pred             HHHHHhcCCCCCchHHHHHHHHHhc-CCcHHHHHHHHHHHhC
Q 007573          496 AKKMRELDPQNSAVYVMLSNLYAAA-GMWRDVTRVRLLMKEQ  536 (597)
Q Consensus       496 ~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~  536 (597)
                      ++++++.+|++......+...+.+. +.+++|.++|..+.+.
T Consensus       158 ~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~  199 (281)
T 2c2l_A          158 CQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK  199 (281)
T ss_dssp             TSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred             HHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence            9999999998877777777777776 7789999999887653

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=98.72  E-value=1.6e-07  Score=76.07  Aligned_cols=117  Identities=13%  Similarity=-0.021  Sum_probs=89.2

Q ss_pred             hHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHH
Q 007573          405 GITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMP--FEADTGVWGSLLAA  482 (597)
Q Consensus       405 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~  482 (597)
                      ...+..+...+...|++++|...++.+.+.  .+.+...+..+...+...|++++|.+.+++..  .+.+...+..++..
T Consensus        12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~   89 (131)
T 2vyi_A           12 AERLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLA   89 (131)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHH
Confidence            345555666666777777777777776653  12346667777777777888888887777654  23356788888888


Q ss_pred             HHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCc
Q 007573          483 CVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGMW  523 (597)
Q Consensus       483 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~  523 (597)
                      +...|++++|...++++++.+|+++..+..++.++...|++
T Consensus        90 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~  130 (131)
T 2vyi_A           90 LSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA  130 (131)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred             HHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence            99999999999999999999999988899999999888875

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=98.71  E-value=5.6e-07  Score=80.28  Aligned_cols=124  Identities=8%  Similarity=-0.070  Sum_probs=67.9

Q ss_pred             HHHHHHHHhcCCHHHHHHHHhccCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHH
Q 007573          343 NAVITMYSRCGGILDSELAFRQIHSPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVN  422 (597)
Q Consensus       343 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~  422 (597)
                      ..+...+...|++++|...|++..+++...|..+...+...|++++|++.|++..+.. +.+...+..+..++...|+++
T Consensus        10 ~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~   88 (213)
T 1hh8_A           10 WNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYD   88 (213)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcccHH
Confidence            3445555556666666666666555555566666666666666666666666555432 223445555555666666666


Q ss_pred             HHHHHHHHhHHhcCC-------------CC-ChHHHHHHHHHHhhcCCHHHHHHHHhhC
Q 007573          423 ESMDLFELMVKVYGI-------------IP-SSEHYTCLVDILSRAGQLEKAWQITQGM  467 (597)
Q Consensus       423 ~a~~~~~~~~~~~~~-------------~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~  467 (597)
                      +|.+.|+.+.+...-             .| ....+..+..+|...|++++|.+.+++.
T Consensus        89 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  147 (213)
T 1hh8_A           89 LAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALA  147 (213)
T ss_dssp             HHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence            666666655542111             01 1245555556666666666666665554

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=98.69  E-value=2e-07  Score=89.81  Aligned_cols=95  Identities=14%  Similarity=-0.007  Sum_probs=82.7

Q ss_pred             hHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 007573          441 SEHYTCLVDILSRAGQLEKAWQITQGMP-FEA-DTGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYA  518 (597)
Q Consensus       441 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~  518 (597)
                      ...|..+..+|.+.|++++|...+++.. ..| +...|..+..++...|++++|+..|+++++++|+++.++..++.++.
T Consensus       196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~  275 (336)
T 1p5q_A          196 LASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQ  275 (336)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence            4577788888889999999999888765 334 67789999999999999999999999999999999999999999999


Q ss_pred             hcCCcHHH-HHHHHHHHh
Q 007573          519 AAGMWRDV-TRVRLLMKE  535 (597)
Q Consensus       519 ~~g~~~~A-~~~~~~~~~  535 (597)
                      ..|++++| .+.++.|.+
T Consensus       276 ~~~~~~~a~~~~~~~~~~  293 (336)
T 1p5q_A          276 RIRRQLAREKKLYANMFE  293 (336)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            99999999 556777754

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=98.68  E-value=8.9e-07  Score=78.99  Aligned_cols=161  Identities=10%  Similarity=-0.080  Sum_probs=121.3

Q ss_pred             cccHHHHHHHHHHhcCCHHHHHHHHhccC-CCChhhHHHHHHHHHHcC----CHHHHHHHHHHHHHCCCCCChHHHHHHH
Q 007573          338 NVSVCNAVITMYSRCGGILDSELAFRQIH-SPNLVSWNTIIAAFAQHG----HYEKALIFFSQMGLNGFDPDGITFLSLL  412 (597)
Q Consensus       338 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~~g----~~~~A~~~~~~m~~~g~~p~~~~~~~ll  412 (597)
                      +...+..|...|...+++++|...|++.. ..++..+..+...|.. +    ++++|+++|++..+.|   +...+..+.
T Consensus        17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~~Lg   92 (212)
T 3rjv_A           17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGEIVLA   92 (212)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred             CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHHHHHH
Confidence            44556666666767777777777777665 3456667777777766 6    8899999999987754   566777777


Q ss_pred             HHHhc----cCcHHHHHHHHHHhHHhcCCCCC---hHHHHHHHHHHhh----cCCHHHHHHHHhhCC-CCCCHHHHHHHH
Q 007573          413 SACGH----AGKVNESMDLFELMVKVYGIIPS---SEHYTCLVDILSR----AGQLEKAWQITQGMP-FEADTGVWGSLL  480 (597)
Q Consensus       413 ~~~~~----~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~----~g~~~~A~~~~~~~~-~~p~~~~~~~l~  480 (597)
                      ..+..    .+++++|.+.|++..+.   .|+   +..+..|..+|..    .++.++|...|++.. ..++...+..|.
T Consensus        93 ~~y~~g~g~~~d~~~A~~~~~~A~~~---~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~a~~~Lg  169 (212)
T 3rjv_A           93 RVLVNRQAGATDVAHAITLLQDAARD---SESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSLSRTGYAEYWAG  169 (212)
T ss_dssp             HHHTCGGGSSCCHHHHHHHHHHHTSS---TTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHTSCTTHHHHHHH
T ss_pred             HHHHcCCCCccCHHHHHHHHHHHHHc---CCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence            77776    78999999999987643   342   6788888888888    789999999998875 335666778888


Q ss_pred             HHHHhc-C-----CHHHHHHHHHHHHhcCCC
Q 007573          481 AACVIN-L-----NVELGELAAKKMRELDPQ  505 (597)
Q Consensus       481 ~~~~~~-g-----~~~~a~~~~~~~~~~~p~  505 (597)
                      ..|... |     +.++|+..++++.+.+..
T Consensus       170 ~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~  200 (212)
T 3rjv_A          170 MMFQQGEKGFIEPNKQKALHWLNVSCLEGFD  200 (212)
T ss_dssp             HHHHHCBTTTBCCCHHHHHHHHHHHHHHTCH
T ss_pred             HHHHcCCCCCCCCCHHHHHHHHHHHHHcCCH
Confidence            887643 3     899999999999988654

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=98.65  E-value=3.9e-07  Score=77.60  Aligned_cols=102  Identities=16%  Similarity=0.054  Sum_probs=51.3

Q ss_pred             HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHH
Q 007573          406 ITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMP-FEA-DTGVWGSLLAAC  483 (597)
Q Consensus       406 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~  483 (597)
                      ..+..+...+...|++++|...|++..+..  +.+...|..+..+|.+.|++++|+..+++.. ..| +...|..+..++
T Consensus        12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~   89 (164)
T 3sz7_A           12 DKLKSEGNAAMARKEYSKAIDLYTQALSIA--PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLAR   89 (164)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            344445555555555555555555555421  1234445555555555555555555555443 222 344455555555


Q ss_pred             HhcCCHHHHHHHHHHHHhcCCCCCch
Q 007573          484 VINLNVELGELAAKKMRELDPQNSAV  509 (597)
Q Consensus       484 ~~~g~~~~a~~~~~~~~~~~p~~~~~  509 (597)
                      ...|++++|+..++++++++|+++..
T Consensus        90 ~~~g~~~~A~~~~~~al~~~p~~~~~  115 (164)
T 3sz7_A           90 FDMADYKGAKEAYEKGIEAEGNGGSD  115 (164)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHSSSCCH
T ss_pred             HHccCHHHHHHHHHHHHHhCCCchHH
Confidence            55555555555555555555555443

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=98.63  E-value=1.3e-07  Score=75.79  Aligned_cols=95  Identities=17%  Similarity=0.003  Sum_probs=82.2

Q ss_pred             HHHHHHHHHhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhc
Q 007573          443 HYTCLVDILSRAGQLEKAWQITQGMP-FEA-DTGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAA  520 (597)
Q Consensus       443 ~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~  520 (597)
                      .+..+...+.+.|++++|...+++.. ..| +...|..+..++...|++++|+..++++++++|+++.++..++.+|...
T Consensus        19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~   98 (121)
T 1hxi_A           19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE   98 (121)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence            34556777888999999999998876 444 6778899999999999999999999999999999999999999999999


Q ss_pred             CCcHHHHHHHHHHHhCC
Q 007573          521 GMWRDVTRVRLLMKEQG  537 (597)
Q Consensus       521 g~~~~A~~~~~~~~~~~  537 (597)
                      |++++|++.+++..+..
T Consensus        99 g~~~~A~~~~~~al~~~  115 (121)
T 1hxi_A           99 HNANAALASLRAWLLSQ  115 (121)
T ss_dssp             HHHHHHHHHHHHHHC--
T ss_pred             CCHHHHHHHHHHHHHhC
Confidence            99999999999987654

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.62  E-value=2.8e-07  Score=84.33  Aligned_cols=124  Identities=8%  Similarity=-0.077  Sum_probs=77.1

Q ss_pred             HHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCCCCCCH----HHHHHHHHHHHhc
Q 007573          411 LLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMPFEADT----GVWGSLLAACVIN  486 (597)
Q Consensus       411 ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~----~~~~~l~~~~~~~  486 (597)
                      +...+...|++++|.++|+.+..   ..|+......+...+.+.|++++|+..|+.....|+.    ..+..+..++...
T Consensus       108 yA~~L~~~g~y~eA~~~l~~~~~---~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~L  184 (282)
T 4f3v_A          108 FAACEAAQGNYADAMEALEAAPV---AGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANL  184 (282)
T ss_dssp             HHHHHHHHTCHHHHHHHHTSSCC---TTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHh---cCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHC
Confidence            44556666777777777765543   2343324445555667777777777777655422322    2566666677777


Q ss_pred             CCHHHHHHHHHHHHhcC--CC-CCchHHHHHHHHHhcCCcHHHHHHHHHHHhCC
Q 007573          487 LNVELGELAAKKMRELD--PQ-NSAVYVMLSNLYAAAGMWRDVTRVRLLMKEQG  537 (597)
Q Consensus       487 g~~~~a~~~~~~~~~~~--p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  537 (597)
                      |++++|+..|+++....  |. .+......+.++.+.|+.++|...|+++....
T Consensus       185 G~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~  238 (282)
T 4f3v_A          185 ALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH  238 (282)
T ss_dssp             TCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred             CCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence            77777777777776432  33 23456677777777777777777777776643

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=98.62  E-value=2.2e-07  Score=72.93  Aligned_cols=98  Identities=11%  Similarity=-0.036  Sum_probs=81.9

Q ss_pred             hHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--CCchHHHHHHH
Q 007573          441 SEHYTCLVDILSRAGQLEKAWQITQGMP--FEADTGVWGSLLAACVINLNVELGELAAKKMRELDPQ--NSAVYVMLSNL  516 (597)
Q Consensus       441 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~  516 (597)
                      ...+..+...+.+.|++++|...+++..  .+.+...|..+...+...|++++|+..++++++..|.  ++.++..++.+
T Consensus         6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~   85 (112)
T 2kck_A            6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA   85 (112)
T ss_dssp             TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence            4556667777888888888888887754  3345678888888899999999999999999999999  88899999999


Q ss_pred             HHhc-CCcHHHHHHHHHHHhCCC
Q 007573          517 YAAA-GMWRDVTRVRLLMKEQGV  538 (597)
Q Consensus       517 ~~~~-g~~~~A~~~~~~~~~~~~  538 (597)
                      +... |++++|.+.++.+.....
T Consensus        86 ~~~~~~~~~~A~~~~~~~~~~~p  108 (112)
T 2kck_A           86 LRYIEGKEVEAEIAEARAKLEHH  108 (112)
T ss_dssp             HTTCSSCSHHHHHHHHHHGGGCC
T ss_pred             HHHHhCCHHHHHHHHHHHhhccc
Confidence            9999 999999999999887654

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=98.61  E-value=4.6e-07  Score=75.53  Aligned_cols=104  Identities=10%  Similarity=-0.058  Sum_probs=87.9

Q ss_pred             CCC-hHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCC-CHHHHHH
Q 007573          402 DPD-GITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMP-FEA-DTGVWGS  478 (597)
Q Consensus       402 ~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~  478 (597)
                      .|+ ...+..+...+.+.|++++|...|+.+.+.  -+.+...|..+..+|...|++++|.+.|++.. ..| ++..|..
T Consensus        32 ~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~  109 (151)
T 3gyz_A           32 PDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY--DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFH  109 (151)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHH
Confidence            444 446777788889999999999999999864  23357889999999999999999999998876 444 5778999


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 007573          479 LLAACVINLNVELGELAAKKMRELDPQNS  507 (597)
Q Consensus       479 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~  507 (597)
                      +..++...|++++|+..|++++++.|+++
T Consensus       110 lg~~~~~lg~~~eA~~~~~~al~l~~~~~  138 (151)
T 3gyz_A          110 TGQCQLRLKAPLKAKECFELVIQHSNDEK  138 (151)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence            99999999999999999999999998754

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=98.60  E-value=4.5e-07  Score=74.37  Aligned_cols=99  Identities=10%  Similarity=-0.052  Sum_probs=83.4

Q ss_pred             CChHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 007573          439 PSSEHYTCLVDILSRAGQLEKAWQITQGMP--FEADTGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNL  516 (597)
Q Consensus       439 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~  516 (597)
                      .+...+..+...+...|++++|...+++..  .+.+...|..+..++...|++++|+..++++++++|+++.++..++.+
T Consensus         7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~   86 (137)
T 3q49_B            7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC   86 (137)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence            346677778888888888888888887754  333567888888889999999999999999999999999999999999


Q ss_pred             HHhcCCcHHHHHHHHHHHhCC
Q 007573          517 YAAAGMWRDVTRVRLLMKEQG  537 (597)
Q Consensus       517 ~~~~g~~~~A~~~~~~~~~~~  537 (597)
                      |...|++++|.+.+++..+..
T Consensus        87 ~~~~~~~~~A~~~~~~a~~~~  107 (137)
T 3q49_B           87 QLEMESYDEAIANLQRAYSLA  107 (137)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHhhHHHHHHHHHHHHHHC
Confidence            999999999999999887644

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=98.60  E-value=1.1e-07  Score=79.27  Aligned_cols=104  Identities=12%  Similarity=-0.014  Sum_probs=83.5

Q ss_pred             hHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHH
Q 007573          405 GITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMP-FEA-DTGVWGSLLAA  482 (597)
Q Consensus       405 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~  482 (597)
                      ...+..+...+...|++++|...|+.+...  -+.+...|..+..+|...|++++|.+.+++.. ..| +...+..+..+
T Consensus        21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~   98 (148)
T 2vgx_A           21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVL--DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAEC   98 (148)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHc--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHH
Confidence            445666777788888888888888888764  23357778888888888999999988888765 334 56788889999


Q ss_pred             HHhcCCHHHHHHHHHHHHhcCCCCCchH
Q 007573          483 CVINLNVELGELAAKKMRELDPQNSAVY  510 (597)
Q Consensus       483 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~  510 (597)
                      +...|++++|+..++++++++|+++...
T Consensus        99 ~~~~g~~~~A~~~~~~al~~~p~~~~~~  126 (148)
T 2vgx_A           99 LLQXGELAEAESGLFLAQELIANXPEFX  126 (148)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHTTCGGGH
T ss_pred             HHHcCCHHHHHHHHHHHHHHCcCCCcch
Confidence            9999999999999999999999887653

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=98.59  E-value=2.4e-07  Score=74.95  Aligned_cols=94  Identities=9%  Similarity=-0.061  Sum_probs=77.2

Q ss_pred             HHHHHHHHHHhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-------chHHH
Q 007573          442 EHYTCLVDILSRAGQLEKAWQITQGMP-FEA-DTGVWGSLLAACVINLNVELGELAAKKMRELDPQNS-------AVYVM  512 (597)
Q Consensus       442 ~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~-------~~~~~  512 (597)
                      ..+..+...+.+.|++++|++.|++.. ..| +...|..+..+|...|++++|+..++++++++|+++       .+|..
T Consensus         9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~   88 (127)
T 4gcn_A            9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR   88 (127)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence            355667888888888888888888765 344 567888899999999999999999999999888764       36777


Q ss_pred             HHHHHHhcCCcHHHHHHHHHHHh
Q 007573          513 LSNLYAAAGMWRDVTRVRLLMKE  535 (597)
Q Consensus       513 l~~~~~~~g~~~~A~~~~~~~~~  535 (597)
                      ++.++...|++++|++.|++..+
T Consensus        89 lg~~~~~~~~~~~A~~~~~kal~  111 (127)
T 4gcn_A           89 AGNAFQKQNDLSLAVQWFHRSLS  111 (127)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHh
Confidence            88889999999999999988765

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.57  E-value=5.2e-06  Score=78.23  Aligned_cols=158  Identities=11%  Similarity=-0.068  Sum_probs=120.2

Q ss_pred             HHHHHHhcCCHHHHHHHHhccCC---CChh------hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CC----hHHHHH
Q 007573          345 VITMYSRCGGILDSELAFRQIHS---PNLV------SWNTIIAAFAQHGHYEKALIFFSQMGLNGFD-PD----GITFLS  410 (597)
Q Consensus       345 l~~~~~~~g~~~~A~~~~~~~~~---~~~~------~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~~~~~  410 (597)
                      .+..+...|++++|...+++...   .+..      .+..+...+...|++++|+..+++..+.... ++    ..+++.
T Consensus        81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~  160 (293)
T 3u3w_A           81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA  160 (293)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred             HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence            46678889999999999988652   1111      2334666677788999999999999874322 23    236888


Q ss_pred             HHHHHhccCcHHHHHHHHHHhHHhcC----CCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC-------CCCC-HHHHH
Q 007573          411 LLSACGHAGKVNESMDLFELMVKVYG----IIPS-SEHYTCLVDILSRAGQLEKAWQITQGMP-------FEAD-TGVWG  477 (597)
Q Consensus       411 ll~~~~~~g~~~~a~~~~~~~~~~~~----~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~p~-~~~~~  477 (597)
                      +..++...|++++|...|+++.+...    ..+. ..++..+...|.+.|++++|.+.+++..       ..+. ..+|.
T Consensus       161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~  240 (293)
T 3u3w_A          161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY  240 (293)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence            99999999999999999999875321    1122 3478889999999999999999988754       1222 56889


Q ss_pred             HHHHHHHhcC-CHHHHHHHHHHHHhc
Q 007573          478 SLLAACVINL-NVELGELAAKKMREL  502 (597)
Q Consensus       478 ~l~~~~~~~g-~~~~a~~~~~~~~~~  502 (597)
                      .++.++...| ++++|...+++++++
T Consensus       241 ~lg~~~~~~g~~~~~A~~~~~~Al~i  266 (293)
T 3u3w_A          241 QRGECLRKLEYEEAEIEDAYKKASFF  266 (293)
T ss_dssp             HHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence            9999999999 579999999999864

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.57  E-value=1.9e-06  Score=76.06  Aligned_cols=153  Identities=9%  Similarity=-0.034  Sum_probs=90.9

Q ss_pred             HcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhc---CCCC-ChHHHHHHHHHHhhcCCH
Q 007573          382 QHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMVKVY---GIIP-SSEHYTCLVDILSRAGQL  457 (597)
Q Consensus       382 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~~p-~~~~~~~l~~~~~~~g~~  457 (597)
                      ..|++++|.+.++.+.. .......++..+...+...|++++|...+++..+..   +..| ....+..+...|...|++
T Consensus         4 ~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~   82 (203)
T 3gw4_A            4 EAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW   82 (203)
T ss_dssp             ---CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             ccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence            34566666664333322 111224455555566666666666666666554421   1111 134566666777777777


Q ss_pred             HHHHHHHhhCC----CCC-C----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--CC----CchHHHHHHHHHhcCC
Q 007573          458 EKAWQITQGMP----FEA-D----TGVWGSLLAACVINLNVELGELAAKKMRELDP--QN----SAVYVMLSNLYAAAGM  522 (597)
Q Consensus       458 ~~A~~~~~~~~----~~p-~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p--~~----~~~~~~l~~~~~~~g~  522 (597)
                      ++|.+.+++..    ..+ +    ...+..+...+...|++++|...++++++..+  .+    ..++..++.++...|+
T Consensus        83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~  162 (203)
T 3gw4_A           83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN  162 (203)
T ss_dssp             HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence            77777766543    112 2    23566777778888888888888888876532  12    2335778888888888


Q ss_pred             cHHHHHHHHHHHh
Q 007573          523 WRDVTRVRLLMKE  535 (597)
Q Consensus       523 ~~~A~~~~~~~~~  535 (597)
                      +++|.+.+++..+
T Consensus       163 ~~~A~~~~~~al~  175 (203)
T 3gw4_A          163 LLEAQQHWLRARD  175 (203)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            8888888887765

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=98.55  E-value=6.9e-07  Score=70.72  Aligned_cols=94  Identities=11%  Similarity=-0.015  Sum_probs=59.5

Q ss_pred             HHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHh
Q 007573          442 EHYTCLVDILSRAGQLEKAWQITQGMP--FEADTGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAA  519 (597)
Q Consensus       442 ~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~  519 (597)
                      ..+..++..+...|++++|.+.+++..  .+.+...+..+...+...|++++|...++++++.+|.++..+..++.++..
T Consensus         5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~   84 (118)
T 1elw_A            5 NELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEF   84 (118)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence            344555555666666666666665543  223455666666666666677777777777776666666666666777777


Q ss_pred             cCCcHHHHHHHHHHHh
Q 007573          520 AGMWRDVTRVRLLMKE  535 (597)
Q Consensus       520 ~g~~~~A~~~~~~~~~  535 (597)
                      .|++++|.+.+++..+
T Consensus        85 ~~~~~~A~~~~~~~~~  100 (118)
T 1elw_A           85 LNRFEEAKRTYEEGLK  100 (118)
T ss_dssp             TTCHHHHHHHHHHHHT
T ss_pred             HhhHHHHHHHHHHHHH
Confidence            7777777776666654

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=98.54  E-value=6e-07  Score=79.14  Aligned_cols=168  Identities=9%  Similarity=-0.100  Sum_probs=100.7

Q ss_pred             HHhcCCHHHHHHHHhccCC---CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHH
Q 007573          349 YSRCGGILDSELAFRQIHS---PNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESM  425 (597)
Q Consensus       349 ~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~  425 (597)
                      ....|+++++.+.++.-..   .....+..+...+...|++++|+..|++.....  |+...+...        ....-.
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~--------~~~~~~   83 (198)
T 2fbn_A           14 RENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFF--IHTEEWDDQ--------ILLDKK   83 (198)
T ss_dssp             --------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--TTCTTCCCH--------HHHHHH
T ss_pred             hhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--hcccccchh--------hHHHHH
Confidence            3344555555555543321   233456666667777777777777777776542  211100000        000000


Q ss_pred             HHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 007573          426 DLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMP--FEADTGVWGSLLAACVINLNVELGELAAKKMRELD  503 (597)
Q Consensus       426 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  503 (597)
                         ..        .....+..+..+|.+.|++++|...+++..  .+.+...+..+..++...|++++|+..++++++++
T Consensus        84 ---~~--------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~  152 (198)
T 2fbn_A           84 ---KN--------IEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLN  152 (198)
T ss_dssp             ---HH--------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred             ---HH--------HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC
Confidence               00        012566777788888888888888887765  33457788899999999999999999999999999


Q ss_pred             CCCCchHHHHHHHHHhcCCcHHHH-HHHHHHHhCC
Q 007573          504 PQNSAVYVMLSNLYAAAGMWRDVT-RVRLLMKEQG  537 (597)
Q Consensus       504 p~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~~~  537 (597)
                      |+++.++..++.++...|+.+++. ..++.+...+
T Consensus       153 p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~~  187 (198)
T 2fbn_A          153 PNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDKG  187 (198)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHC-------------
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            999999999999999988888777 5566665443

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=98.53  E-value=9.8e-07  Score=71.68  Aligned_cols=97  Identities=11%  Similarity=0.015  Sum_probs=88.3

Q ss_pred             ChHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 007573          440 SSEHYTCLVDILSRAGQLEKAWQITQGMP-FEA-DTGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLY  517 (597)
Q Consensus       440 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~  517 (597)
                      +...+..+...+.+.|++++|.+.+++.. ..| +...+..+...+...|++++|+..++++++.+|.++.++..++.++
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~   94 (133)
T 2lni_A           15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAAL   94 (133)
T ss_dssp             HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence            46778889999999999999999998865 444 6778999999999999999999999999999999999999999999


Q ss_pred             HhcCCcHHHHHHHHHHHhC
Q 007573          518 AAAGMWRDVTRVRLLMKEQ  536 (597)
Q Consensus       518 ~~~g~~~~A~~~~~~~~~~  536 (597)
                      ...|++++|.+.+++..+.
T Consensus        95 ~~~~~~~~A~~~~~~~~~~  113 (133)
T 2lni_A           95 EAMKDYTKAMDVYQKALDL  113 (133)
T ss_dssp             HHTTCHHHHHHHHHHHHHH
T ss_pred             HHHhhHHHHHHHHHHHHHh
Confidence            9999999999999998764

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.53  E-value=3.6e-07  Score=83.55  Aligned_cols=136  Identities=12%  Similarity=-0.027  Sum_probs=101.1

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC--hHHHHHHHHH
Q 007573          373 WNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPS--SEHYTCLVDI  450 (597)
Q Consensus       373 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~  450 (597)
                      +-.....+...|++++|.++|..+...  .|+......+...+.+.+++++|+..|+...+. . .|.  ...+..+..+
T Consensus       105 ~LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~-~-d~~~~~~a~~~LG~a  180 (282)
T 4f3v_A          105 TMGFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW-P-DKFLAGAAGVAHGVA  180 (282)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC-S-CHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc-C-CcccHHHHHHHHHHH
Confidence            344566778889999999999887754  455445555666788899999999999755321 1 111  2367778889


Q ss_pred             HhhcCCHHHHHHHHhhCCCC---CC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHH
Q 007573          451 LSRAGQLEKAWQITQGMPFE---AD--TGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVML  513 (597)
Q Consensus       451 ~~~~g~~~~A~~~~~~~~~~---p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l  513 (597)
                      +.+.|++++|++.|++....   |.  ...+.....++.+.|+.++|...|+++++.+|+ +.+...|
T Consensus       181 l~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL  247 (282)
T 4f3v_A          181 AANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAAL  247 (282)
T ss_dssp             HHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHH
Confidence            99999999999999887412   43  346777888899999999999999999999998 6554444

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=98.52  E-value=6.1e-07  Score=77.42  Aligned_cols=127  Identities=11%  Similarity=0.057  Sum_probs=98.6

Q ss_pred             HHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHH-HhhcCCH--
Q 007573          381 AQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDI-LSRAGQL--  457 (597)
Q Consensus       381 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~g~~--  457 (597)
                      ...|++++|+..+++..+.. +.+...+..+...+...|++++|...|+.+.+..  +.+...+..+..+ +...|++  
T Consensus        21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~l~~~~~~~~~   97 (177)
T 2e2e_A           21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR--GENAELYAALATVLYYQASQHMT   97 (177)
T ss_dssp             C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHTTTCCC
T ss_pred             hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhcCCcch
Confidence            34678888888888877653 3456778888888889999999999999887642  2356777788888 7788998  


Q ss_pred             HHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchH
Q 007573          458 EKAWQITQGMP-FEA-DTGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVY  510 (597)
Q Consensus       458 ~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~  510 (597)
                      ++|...+++.. ..| +...+..+...+...|++++|+..++++++.+|+++...
T Consensus        98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  152 (177)
T 2e2e_A           98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRT  152 (177)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHH
T ss_pred             HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHH
Confidence            99999988765 344 567888899999999999999999999999999986543

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.52  E-value=5.8e-06  Score=77.88  Aligned_cols=162  Identities=11%  Similarity=-0.029  Sum_probs=119.9

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHhccC---CCCh------hhHHHHHHHHHHcCCHHHHHHHHHHHHHCCC---CCC--hH
Q 007573          341 VCNAVITMYSRCGGILDSELAFRQIH---SPNL------VSWNTIIAAFAQHGHYEKALIFFSQMGLNGF---DPD--GI  406 (597)
Q Consensus       341 ~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~p~--~~  406 (597)
                      .+...+..+...|++++|.+.+....   +...      ..+..+...+...|++++|+..+++..+...   .+.  ..
T Consensus        77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~  156 (293)
T 2qfc_A           77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY  156 (293)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence            34445677888899999988887543   1111      2234455667788899999999999875321   222  34


Q ss_pred             HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-----hHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCC-------CH
Q 007573          407 TFLSLLSACGHAGKVNESMDLFELMVKVYGIIPS-----SEHYTCLVDILSRAGQLEKAWQITQGMP-FEA-------DT  473 (597)
Q Consensus       407 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-------~~  473 (597)
                      +++.+...+...|++++|...++++.+.....|+     ..++..++..|.+.|++++|.+.+++.. ..+       -.
T Consensus       157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~  236 (293)
T 2qfc_A          157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG  236 (293)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence            7888899999999999999999998743211222     2578889999999999999999998754 111       15


Q ss_pred             HHHHHHHHHHHhcCCHHHH-HHHHHHHHhc
Q 007573          474 GVWGSLLAACVINLNVELG-ELAAKKMREL  502 (597)
Q Consensus       474 ~~~~~l~~~~~~~g~~~~a-~~~~~~~~~~  502 (597)
                      .++..++..+...|++++| ...+++++++
T Consensus       237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~  266 (293)
T 2qfc_A          237 QLYYQRGECLRKLEYEEAEIEDAYKKASFF  266 (293)
T ss_dssp             HHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence            6788899999999999999 7889988764

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.52  E-value=9.4e-07  Score=70.74  Aligned_cols=97  Identities=20%  Similarity=0.185  Sum_probs=87.9

Q ss_pred             hHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 007573          441 SEHYTCLVDILSRAGQLEKAWQITQGMP--FEADTGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYA  518 (597)
Q Consensus       441 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~  518 (597)
                      ...+..++..+...|++++|.+.++++.  .+.+..++..+...+...|++++|+..++++++..|.++..+..++.+|.
T Consensus         9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~   88 (125)
T 1na0_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY   88 (125)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence            5678888999999999999999998875  34467789999999999999999999999999999999999999999999


Q ss_pred             hcCCcHHHHHHHHHHHhCC
Q 007573          519 AAGMWRDVTRVRLLMKEQG  537 (597)
Q Consensus       519 ~~g~~~~A~~~~~~~~~~~  537 (597)
                      ..|++++|.+.++++.+..
T Consensus        89 ~~~~~~~A~~~~~~~~~~~  107 (125)
T 1na0_A           89 KQGDYDEAIEYYQKALELD  107 (125)
T ss_dssp             HTTCHHHHHHHHHHHHHHC
T ss_pred             HhcCHHHHHHHHHHHHHhC
Confidence            9999999999999987643

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=98.52  E-value=1.5e-06  Score=68.73  Aligned_cols=110  Identities=11%  Similarity=0.054  Sum_probs=78.4

Q ss_pred             HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHH
Q 007573          406 ITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMP-FEA-DTGVWGSLLAAC  483 (597)
Q Consensus       406 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~  483 (597)
                      ..+..+...+...|++++|...++...+.  .+.+...+..+...+...|++++|...+++.. ..| +...+..+..++
T Consensus         5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~   82 (118)
T 1elw_A            5 NELKEKGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL   82 (118)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence            34555556666667777777777766653  12345666677777777777777777776654 233 566788888888


Q ss_pred             HhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 007573          484 VINLNVELGELAAKKMRELDPQNSAVYVMLSNLY  517 (597)
Q Consensus       484 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~  517 (597)
                      ...|++++|...++++++.+|+++..+..++.+.
T Consensus        83 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~  116 (118)
T 1elw_A           83 EFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME  116 (118)
T ss_dssp             HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred             HHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence            9999999999999999999998877777666553

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=98.50  E-value=2.1e-06  Score=69.33  Aligned_cols=98  Identities=12%  Similarity=-0.030  Sum_probs=88.0

Q ss_pred             ChHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 007573          440 SSEHYTCLVDILSRAGQLEKAWQITQGMP--FEADTGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLY  517 (597)
Q Consensus       440 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~  517 (597)
                      +...+..++..+...|++++|.+.+++..  .+.+...+..+...+...|++++|+..++++++..|+++..+..++.++
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~   90 (131)
T 2vyi_A           11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL   90 (131)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence            35677788899999999999999998875  3446778999999999999999999999999999999999999999999


Q ss_pred             HhcCCcHHHHHHHHHHHhCC
Q 007573          518 AAAGMWRDVTRVRLLMKEQG  537 (597)
Q Consensus       518 ~~~g~~~~A~~~~~~~~~~~  537 (597)
                      ...|++++|.+.+++..+..
T Consensus        91 ~~~~~~~~A~~~~~~~~~~~  110 (131)
T 2vyi_A           91 SSLNKHVEAVAYYKKALELD  110 (131)
T ss_dssp             HHTTCHHHHHHHHHHHHHHS
T ss_pred             HHhCCHHHHHHHHHHHHhcC
Confidence            99999999999999987743

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=98.49  E-value=1.1e-06  Score=70.86  Aligned_cols=110  Identities=7%  Similarity=-0.080  Sum_probs=78.7

Q ss_pred             HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHH
Q 007573          406 ITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMP-FEA-DTGVWGSLLAAC  483 (597)
Q Consensus       406 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~  483 (597)
                      ..+......+.+.|++++|...|++..+.  .+.+...|..+..+|.+.|++++|...+++.. ..| +...|..+..++
T Consensus         5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~   82 (126)
T 3upv_A            5 EEARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQ   82 (126)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence            34555556666777777777777776653  12346677777777777777777777777654 334 566888888889


Q ss_pred             HhcCCHHHHHHHHHHHHhcC------CCCCchHHHHHHHH
Q 007573          484 VINLNVELGELAAKKMRELD------PQNSAVYVMLSNLY  517 (597)
Q Consensus       484 ~~~g~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~  517 (597)
                      ...|++++|+..++++++++      |.++.+...+..+.
T Consensus        83 ~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~  122 (126)
T 3upv_A           83 IAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKAS  122 (126)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred             HHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHH
Confidence            99999999999999999988      77666666665544

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=98.48  E-value=1.1e-06  Score=74.55  Aligned_cols=64  Identities=8%  Similarity=0.013  Sum_probs=58.3

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHhC
Q 007573          473 TGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRVRLLMKEQ  536 (597)
Q Consensus       473 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  536 (597)
                      ...|..+..++...|++++|+..++++++++|.++.+|..++.+|...|++++|.+.+++..+.
T Consensus        63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l  126 (162)
T 3rkv_A           63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN  126 (162)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence            4578888889999999999999999999999999999999999999999999999999988764

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=98.48  E-value=8.4e-07  Score=73.36  Aligned_cols=106  Identities=13%  Similarity=0.020  Sum_probs=79.1

Q ss_pred             HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHH
Q 007573          406 ITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMP-FEA-DTGVWGSLLAAC  483 (597)
Q Consensus       406 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~  483 (597)
                      ..+..+...+.+.|++++|...|+.+.+.  -+.+...|..+..+|.+.|++++|...+++.. ..| +...+..+..++
T Consensus        19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~   96 (142)
T 2xcb_A           19 EQLYALGFNQYQAGKWDDAQKIFQALCML--DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECH   96 (142)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence            34555566677777888888887777653  12346677777788888888888888887765 333 566788888899


Q ss_pred             HhcCCHHHHHHHHHHHHhcCCCCCchHHHH
Q 007573          484 VINLNVELGELAAKKMRELDPQNSAVYVML  513 (597)
Q Consensus       484 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l  513 (597)
                      ...|++++|+..++++++++|+++......
T Consensus        97 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~  126 (142)
T 2xcb_A           97 LQLGDLDGAESGFYSARALAAAQPAHEALA  126 (142)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHhCCCCcchHHHH
Confidence            999999999999999999999887655443

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.47  E-value=1.1e-06  Score=77.54  Aligned_cols=153  Identities=12%  Similarity=0.030  Sum_probs=106.4

Q ss_pred             hcCCHHHHHH---HHhccCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHH----CCCCC-ChHHHHHHHHHHhccCcHH
Q 007573          351 RCGGILDSEL---AFRQIHSPNLVSWNTIIAAFAQHGHYEKALIFFSQMGL----NGFDP-DGITFLSLLSACGHAGKVN  422 (597)
Q Consensus       351 ~~g~~~~A~~---~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p-~~~~~~~ll~~~~~~g~~~  422 (597)
                      ..|++++|.+   .+..-......++..+...+...|++++|+..+++...    .+..| ...++..+...+...|+++
T Consensus         4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~   83 (203)
T 3gw4_A            4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD   83 (203)
T ss_dssp             ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence            4577777777   55443333456777788888888888888888887765    12122 2446777778888899999


Q ss_pred             HHHHHHHHhHHhcCCCC-C----hHHHHHHHHHHhhcCCHHHHHHHHhhCC----CCCC----HHHHHHHHHHHHhcCCH
Q 007573          423 ESMDLFELMVKVYGIIP-S----SEHYTCLVDILSRAGQLEKAWQITQGMP----FEAD----TGVWGSLLAACVINLNV  489 (597)
Q Consensus       423 ~a~~~~~~~~~~~~~~p-~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~----~~~~~~l~~~~~~~g~~  489 (597)
                      +|.+.+++..+...-.+ +    ...+..+...+...|++++|.+.+++..    ..++    ..++..+...+...|++
T Consensus        84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~  163 (203)
T 3gw4_A           84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL  163 (203)
T ss_dssp             HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence            99988888765422122 2    3457778888899999999988887653    1122    22467788889999999


Q ss_pred             HHHHHHHHHHHhcC
Q 007573          490 ELGELAAKKMRELD  503 (597)
Q Consensus       490 ~~a~~~~~~~~~~~  503 (597)
                      ++|...+++++++.
T Consensus       164 ~~A~~~~~~al~~~  177 (203)
T 3gw4_A          164 LEAQQHWLRARDIF  177 (203)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999988753

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=98.47  E-value=1.6e-06  Score=73.62  Aligned_cols=95  Identities=13%  Similarity=-0.001  Sum_probs=52.0

Q ss_pred             hHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 007573          441 SEHYTCLVDILSRAGQLEKAWQITQGMP-FEA-DTGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYA  518 (597)
Q Consensus       441 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~  518 (597)
                      ...+..+...+.+.|++++|.+.|++.. ..| +...|..+..++...|++++|+..++++++++|+++.++..++.+|.
T Consensus        11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~   90 (164)
T 3sz7_A           11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARF   90 (164)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            3344455555555555555555555543 222 34455555555555555555555555555555555555555555555


Q ss_pred             hcCCcHHHHHHHHHHHh
Q 007573          519 AAGMWRDVTRVRLLMKE  535 (597)
Q Consensus       519 ~~g~~~~A~~~~~~~~~  535 (597)
                      ..|++++|.+.+++..+
T Consensus        91 ~~g~~~~A~~~~~~al~  107 (164)
T 3sz7_A           91 DMADYKGAKEAYEKGIE  107 (164)
T ss_dssp             HTTCHHHHHHHHHHHHH
T ss_pred             HccCHHHHHHHHHHHHH
Confidence            55555555555555544

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=98.46  E-value=9.2e-07  Score=71.55  Aligned_cols=92  Identities=12%  Similarity=0.025  Sum_probs=64.8

Q ss_pred             HHHHHHhhcCCHHHHHHHHhhCC-CCCC-H---HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---CchHHHHHHHH
Q 007573          446 CLVDILSRAGQLEKAWQITQGMP-FEAD-T---GVWGSLLAACVINLNVELGELAAKKMRELDPQN---SAVYVMLSNLY  517 (597)
Q Consensus       446 ~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~  517 (597)
                      .+...+...|++++|.+.++++. ..|+ .   ..+..++.++...|++++|+..++++++..|++   +.++..++.+|
T Consensus         7 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~   86 (129)
T 2xev_A            7 NVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQ   86 (129)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHH
Confidence            34555666677777777666654 2232 2   366667777778888888888888888888877   56677788888


Q ss_pred             HhcCCcHHHHHHHHHHHhCC
Q 007573          518 AAAGMWRDVTRVRLLMKEQG  537 (597)
Q Consensus       518 ~~~g~~~~A~~~~~~~~~~~  537 (597)
                      ...|++++|.+.++.+.+..
T Consensus        87 ~~~g~~~~A~~~~~~~~~~~  106 (129)
T 2xev_A           87 YGEGKNTEAQQTLQQVATQY  106 (129)
T ss_dssp             HHTTCHHHHHHHHHHHHHHS
T ss_pred             HHcCCHHHHHHHHHHHHHHC
Confidence            88888888888888776643

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.46  E-value=3.1e-06  Score=70.20  Aligned_cols=109  Identities=10%  Similarity=-0.010  Sum_probs=63.1

Q ss_pred             HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC----hHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCC-CHHHHHHH
Q 007573          406 ITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPS----SEHYTCLVDILSRAGQLEKAWQITQGMP-FEA-DTGVWGSL  479 (597)
Q Consensus       406 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l  479 (597)
                      ..+..+...+...|++++|.+.|+...+   ..|+    ...+..+...|...|++++|.+.+++.. ..| +...+..+
T Consensus        29 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~  105 (148)
T 2dba_A           29 EQLRKEGNELFKCGDYGGALAAYTQALG---LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRR  105 (148)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHHHHHHHT---SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHH---HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHH
Confidence            3444444455555555555555555442   2333    3445555555666666666666655543 223 45566667


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 007573          480 LAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLY  517 (597)
Q Consensus       480 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~  517 (597)
                      ..++...|++++|...++++++++|+++.++..+..+.
T Consensus       106 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  143 (148)
T 2dba_A          106 SQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIS  143 (148)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence            77777777777777777777777777766555555443

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.45  E-value=1.6e-06  Score=71.92  Aligned_cols=97  Identities=14%  Similarity=-0.014  Sum_probs=88.6

Q ss_pred             ChHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHH
Q 007573          440 SSEHYTCLVDILSRAGQLEKAWQITQGMP-FEAD----TGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLS  514 (597)
Q Consensus       440 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~  514 (597)
                      +...+..+...+...|++++|.+.+++.. ..|+    ...|..+...+...|++++|+..++++++.+|+++..+..++
T Consensus        27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a  106 (148)
T 2dba_A           27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRS  106 (148)
T ss_dssp             CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHH
Confidence            46778889999999999999999998865 5676    568888999999999999999999999999999999999999


Q ss_pred             HHHHhcCCcHHHHHHHHHHHhC
Q 007573          515 NLYAAAGMWRDVTRVRLLMKEQ  536 (597)
Q Consensus       515 ~~~~~~g~~~~A~~~~~~~~~~  536 (597)
                      .+|...|++++|.+.+++..+.
T Consensus       107 ~~~~~~~~~~~A~~~~~~al~~  128 (148)
T 2dba_A          107 QALEKLGRLDQAVLDLQRCVSL  128 (148)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHc
Confidence            9999999999999999998764

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=98.44  E-value=4.5e-06  Score=70.77  Aligned_cols=128  Identities=13%  Similarity=0.015  Sum_probs=94.8

Q ss_pred             hhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHH
Q 007573          371 VSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDI  450 (597)
Q Consensus       371 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~  450 (597)
                      ..|..+...+...|++++|...|++..+.. +.+..++..+..++...|++++|...++...+.  .+.+...+..+..+
T Consensus        14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~   90 (166)
T 1a17_A           14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAAS   90 (166)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHHHH
Confidence            356667777888888888888888887653 335677777888888888889988888888764  23346778888888


Q ss_pred             HhhcCCHHHHHHHHhhCC-CCC-CHHHHHHH--HHHHHhcCCHHHHHHHHHHHHh
Q 007573          451 LSRAGQLEKAWQITQGMP-FEA-DTGVWGSL--LAACVINLNVELGELAAKKMRE  501 (597)
Q Consensus       451 ~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l--~~~~~~~g~~~~a~~~~~~~~~  501 (597)
                      +...|++++|.+.+++.. ..| +...+..+  +..+...|++++|+..+.+..+
T Consensus        91 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~  145 (166)
T 1a17_A           91 NMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS  145 (166)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence            888999999988888765 333 44455333  3346778889999988887754

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=98.42  E-value=1e-06  Score=72.62  Aligned_cols=63  Identities=10%  Similarity=-0.071  Sum_probs=57.3

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhc-------CCCCCchH----HHHHHHHHhcCCcHHHHHHHHHHHhC
Q 007573          474 GVWGSLLAACVINLNVELGELAAKKMREL-------DPQNSAVY----VMLSNLYAAAGMWRDVTRVRLLMKEQ  536 (597)
Q Consensus       474 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-------~p~~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~  536 (597)
                      ..|..+..++...|++++|+..+++++++       +|++...|    ...+.++...|++++|++.|++..+.
T Consensus        58 ~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel  131 (159)
T 2hr2_A           58 FCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM  131 (159)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence            38888889999999999999999999999       99998889    99999999999999999999998763

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=98.40  E-value=2.1e-06  Score=69.41  Aligned_cols=94  Identities=11%  Similarity=0.006  Sum_probs=61.9

Q ss_pred             HHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-------CchHHH
Q 007573          442 EHYTCLVDILSRAGQLEKAWQITQGMP--FEADTGVWGSLLAACVINLNVELGELAAKKMRELDPQN-------SAVYVM  512 (597)
Q Consensus       442 ~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~-------~~~~~~  512 (597)
                      ..+..++..+...|++++|...+++..  .+.+...+..++..+...|++++|+..++++++..|.+       +.++..
T Consensus         5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (131)
T 1elr_A            5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR   84 (131)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence            345555666666666666666666543  23345566666667777777777777777777766654       556677


Q ss_pred             HHHHHHhcCCcHHHHHHHHHHHh
Q 007573          513 LSNLYAAAGMWRDVTRVRLLMKE  535 (597)
Q Consensus       513 l~~~~~~~g~~~~A~~~~~~~~~  535 (597)
                      ++.+|...|++++|.+.++++.+
T Consensus        85 la~~~~~~~~~~~A~~~~~~~~~  107 (131)
T 1elr_A           85 IGNSYFKEEKYKDAIHFYNKSLA  107 (131)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhccHHHHHHHHHHHHH
Confidence            77777777777777777777665

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=98.39  E-value=2.4e-06  Score=69.88  Aligned_cols=101  Identities=10%  Similarity=-0.078  Sum_probs=75.8

Q ss_pred             CChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHH
Q 007573          403 PDGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMP-FEA-DTGVWGSLL  480 (597)
Q Consensus       403 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~  480 (597)
                      .+...+..+...+...|++++|...|+...+.  .+.+...+..+...|...|++++|...+++.. ..| +...|..+.
T Consensus         7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~   84 (137)
T 3q49_B            7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG   84 (137)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHH
Confidence            34566666777777777777777777777653  12346677777777888888888888777665 333 567888888


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhcCCC
Q 007573          481 AACVINLNVELGELAAKKMRELDPQ  505 (597)
Q Consensus       481 ~~~~~~g~~~~a~~~~~~~~~~~p~  505 (597)
                      .++...|++++|+..++++++++|+
T Consensus        85 ~~~~~~~~~~~A~~~~~~a~~~~p~  109 (137)
T 3q49_B           85 QCQLEMESYDEAIANLQRAYSLAKE  109 (137)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHChh
Confidence            8899999999999999999998887

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=98.39  E-value=2.9e-06  Score=85.47  Aligned_cols=144  Identities=15%  Similarity=0.042  Sum_probs=99.9

Q ss_pred             hhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHH
Q 007573          370 LVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVD  449 (597)
Q Consensus       370 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~  449 (597)
                      ...|..+...+.+.|++++|+..|++..+.  .|+...+          . -+...+    ...     .....|..+..
T Consensus       268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~----------~-~~~~~~----~~~-----~~~~~~~nla~  325 (457)
T 1kt0_A          268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSW--LEMEYGL----------S-EKESKA----SES-----FLLAAFLNLAM  325 (457)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTTCCSC----------C-HHHHHH----HHH-----HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccC----------C-hHHHHH----HHH-----HHHHHHHHHHH
Confidence            446666677777777777777777776653  1211000          0 000000    000     01456778888


Q ss_pred             HHhhcCCHHHHHHHHhhCC-CC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcHHHH
Q 007573          450 ILSRAGQLEKAWQITQGMP-FE-ADTGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVT  527 (597)
Q Consensus       450 ~~~~~g~~~~A~~~~~~~~-~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~  527 (597)
                      +|.+.|++++|+..+++.. .. .+...|..+..+|...|++++|+..|+++++++|++..++..++.++...|+++++.
T Consensus       326 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~  405 (457)
T 1kt0_A          326 CYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERD  405 (457)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            8999999999999988865 33 467789999999999999999999999999999999999999999999999999876


Q ss_pred             H-HHHHHHh
Q 007573          528 R-VRLLMKE  535 (597)
Q Consensus       528 ~-~~~~~~~  535 (597)
                      + .++.|..
T Consensus       406 ~~~~~~~f~  414 (457)
T 1kt0_A          406 RRIYANMFK  414 (457)
T ss_dssp             HHHHHHC--
T ss_pred             HHHHHHHHh
Confidence            4 4666554

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.38  E-value=2.5e-05  Score=73.97  Aligned_cols=227  Identities=13%  Similarity=0.048  Sum_probs=112.5

Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCHHH-HHHHHHHHhccc-hhHHHHHHHHHHHHhCCCCcccHHHHHHHHH
Q 007573          272 FNAMIAGYAQNGVAEEALRLFSGMIKMDMQPDDAT-LVSVFTACSALQ-LLNEGRQSHVLVIRNGFEANVSVCNAVITMY  349 (597)
Q Consensus       272 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~-~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  349 (597)
                      ++.+-....+.+..++|++++.+++..  .|+..| |+.--..+...+ .++++...++.++...               
T Consensus        57 ~~~~r~~~~~~e~se~AL~lt~~~L~~--nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n---------------  119 (349)
T 3q7a_A           57 MDYFRAIAAKEEKSERALELTEIIVRM--NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN---------------  119 (349)
T ss_dssp             HHHHHHHHHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT---------------
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHh--CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC---------------
Confidence            333333344445556777777777764  444333 332222333333 3455555555544433               


Q ss_pred             HhcCCHHHHHHHHhccCCCChhhHHHHHHHHHHc-C-CHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHH-----
Q 007573          350 SRCGGILDSELAFRQIHSPNLVSWNTIIAAFAQH-G-HYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVN-----  422 (597)
Q Consensus       350 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~-g-~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~-----  422 (597)
                                       +.+..+|+.-...+... + ++++++++++++.+.. +-|..+|+.-...+.+.|..+     
T Consensus       120 -----------------PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~  181 (349)
T 3q7a_A          120 -----------------LKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEA  181 (349)
T ss_dssp             -----------------CCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHH
T ss_pred             -----------------CCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchh
Confidence                             33444444444444443 4 4555555555555432 223334433333333333333     


Q ss_pred             ---HHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCC-------HHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCH-
Q 007573          423 ---ESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQ-------LEKAWQITQGMP-FEA-DTGVWGSLLAACVINLNV-  489 (597)
Q Consensus       423 ---~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~-------~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~-  489 (597)
                         ++++.++++.+.  -+-+...|+....++.+.++       ++++++.++++. ..| |...|+-+-..+.+.|+. 
T Consensus       182 ~~~eELe~~~k~I~~--dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~  259 (349)
T 3q7a_A          182 QWGSELDWCNEMLRV--DGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPL  259 (349)
T ss_dssp             HHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCS
T ss_pred             hHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCc
Confidence               555566655543  12234555555555555554       455666655543 233 455665555555544432 


Q ss_pred             -------------------HHHHHHHHHHHhcC------CCCCchHHHHHHHHHhcCCcHHHHHHHHHHHh
Q 007573          490 -------------------ELGELAAKKMRELD------PQNSAVYVMLSNLYAAAGMWRDVTRVRLLMKE  535 (597)
Q Consensus       490 -------------------~~a~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  535 (597)
                                         .........+....      +..+.++..++++|...|+.++|.++++.+.+
T Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~  330 (349)
T 3q7a_A          260 VPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSS  330 (349)
T ss_dssp             GGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             ccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence                               22222222222222      34566778889999999999999999988754

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=98.37  E-value=2.2e-06  Score=86.76  Aligned_cols=114  Identities=12%  Similarity=-0.000  Sum_probs=50.6

Q ss_pred             HHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHH
Q 007573          381 AQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKA  460 (597)
Q Consensus       381 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A  460 (597)
                      .+.|++++|++.+++..+.. +.+..++..+..++.+.|++++|.+.++++.+.  -+.+...+..+..+|.+.|++++|
T Consensus        17 ~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~lg~~~~~~g~~~eA   93 (477)
T 1wao_1           17 FKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASNMALGKFRAA   93 (477)
T ss_dssp             TTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHH
Confidence            34455555555555554431 122444555555555555555555555555432  112244455555555555555555


Q ss_pred             HHHHhhCC-CCC-CHHHHHHHHHH--HHhcCCHHHHHHHHH
Q 007573          461 WQITQGMP-FEA-DTGVWGSLLAA--CVINLNVELGELAAK  497 (597)
Q Consensus       461 ~~~~~~~~-~~p-~~~~~~~l~~~--~~~~g~~~~a~~~~~  497 (597)
                      .+.+++.. ..| +...+..+..+  +...|++++|++.++
T Consensus        94 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~  134 (477)
T 1wao_1           94 LRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE  134 (477)
T ss_dssp             HHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            55555433 222 22233333333  445555555555555

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=98.36  E-value=8.7e-07  Score=89.68  Aligned_cols=119  Identities=5%  Similarity=-0.062  Sum_probs=99.8

Q ss_pred             HHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCH
Q 007573          412 LSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMP-FEA-DTGVWGSLLAACVINLNV  489 (597)
Q Consensus       412 l~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~  489 (597)
                      ...+.+.|++++|.+.++++.+.  -+.+...|..+..+|.+.|++++|++.+++.. ..| +...|..+..++...|++
T Consensus        13 g~~~~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~   90 (477)
T 1wao_1           13 ANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKF   90 (477)
T ss_dssp             SSSTTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCH
T ss_pred             HHHHHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence            34567889999999999999875  22348899999999999999999999998875 455 567899999999999999


Q ss_pred             HHHHHHHHHHHhcCCCCCchHHHHHHH--HHhcCCcHHHHHHHHH
Q 007573          490 ELGELAAKKMRELDPQNSAVYVMLSNL--YAAAGMWRDVTRVRLL  532 (597)
Q Consensus       490 ~~a~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~A~~~~~~  532 (597)
                      ++|+..++++++++|+++..+..++.+  +.+.|++++|++.+++
T Consensus        91 ~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~  135 (477)
T 1wao_1           91 RAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEH  135 (477)
T ss_dssp             HHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence            999999999999999999999988888  8999999999999884

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=98.34  E-value=4.3e-06  Score=73.56  Aligned_cols=95  Identities=11%  Similarity=-0.049  Sum_probs=77.9

Q ss_pred             HHHHHHHHHHhhcCCHHHHHHHHhhCC-CCC-C----------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 007573          442 EHYTCLVDILSRAGQLEKAWQITQGMP-FEA-D----------------TGVWGSLLAACVINLNVELGELAAKKMRELD  503 (597)
Q Consensus       442 ~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~----------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  503 (597)
                      ..+..+...+.+.|++++|.+.|++.. ..| +                ...|..+..++...|++++|+..++++++.+
T Consensus        39 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~  118 (198)
T 2fbn_A           39 FDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID  118 (198)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence            345556666667777777777766543 112 2                2678888999999999999999999999999


Q ss_pred             CCCCchHHHHHHHHHhcCCcHHHHHHHHHHHhC
Q 007573          504 PQNSAVYVMLSNLYAAAGMWRDVTRVRLLMKEQ  536 (597)
Q Consensus       504 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  536 (597)
                      |+++.++..++.+|...|++++|.+.+++..+.
T Consensus       119 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~  151 (198)
T 2fbn_A          119 KNNVKALYKLGVANMYFGFLEEAKENLYKAASL  151 (198)
T ss_dssp             TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence            999999999999999999999999999998764

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.34  E-value=0.00022  Score=67.43  Aligned_cols=229  Identities=11%  Similarity=0.011  Sum_probs=147.1

Q ss_pred             HHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcC-ChhHHHHHHHHhHHCCCCCC-HHHHHHHHHHHhcc-ch
Q 007573          246 TGFCKVGMLENARLLFERIQP---KDCVSFNAMIAGYAQNG-VAEEALRLFSGMIKMDMQPD-DATLVSVFTACSAL-QL  319 (597)
Q Consensus       246 ~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~-~~  319 (597)
                      ....+.+..++|+++++.+..   .+..+|+.--..+...| .+++++.+++.++...  |. ...|+.--..+... + 
T Consensus        62 ~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n--PKny~aW~hR~wlL~~l~~-  138 (349)
T 3q7a_A           62 AIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN--LKSYQVWHHRLLLLDRISP-  138 (349)
T ss_dssp             HHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT--CCCHHHHHHHHHHHHHHCC-
T ss_pred             HHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHhcC-
Confidence            334455566789999988753   56678998888888888 5999999999999853  43 33333222222111 1 


Q ss_pred             hHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHhccC---CCChhhHHHHHHHHHHcCCHH--------H
Q 007573          320 LNEGRQSHVLVIRNGFEANVSVCNAVITMYSRCGGILDSELAFRQIH---SPNLVSWNTIIAAFAQHGHYE--------K  388 (597)
Q Consensus       320 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~--------~  388 (597)
                                                       .++++++.+++.+.   +.|..+|+--.-.+.+.|.++        +
T Consensus       139 ---------------------------------~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~e  185 (349)
T 3q7a_A          139 ---------------------------------QDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGS  185 (349)
T ss_dssp             ---------------------------------SCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHH
T ss_pred             ---------------------------------CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHH
Confidence                                             03345555555554   345556665544444444444        8


Q ss_pred             HHHHHHHHHHCCCCCChHHHHHHHHHHhccCc-------HHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCH----
Q 007573          389 ALIFFSQMGLNGFDPDGITFLSLLSACGHAGK-------VNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQL----  457 (597)
Q Consensus       389 A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~-------~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~----  457 (597)
                      +++.++++.+.. .-|...|+.....+.+.+.       ++++++.+++++..  .+-|...|+.+-..+.+.|+.    
T Consensus       186 ELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~--~P~n~SaW~Ylr~Ll~~~~~~~~~~  262 (349)
T 3q7a_A          186 ELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHL--IPHNVSAWNYLRGFLKHFSLPLVPI  262 (349)
T ss_dssp             HHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCSGGG
T ss_pred             HHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCCcccc
Confidence            888888888753 4456677777777777665       67888888887763  233567777777777766653    


Q ss_pred             ----------------HHHHHHHhhCC-C-------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-hcCCCCCchHHH
Q 007573          458 ----------------EKAWQITQGMP-F-------EADTGVWGSLLAACVINLNVELGELAAKKMR-ELDPQNSAVYVM  512 (597)
Q Consensus       458 ----------------~~A~~~~~~~~-~-------~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-~~~p~~~~~~~~  512 (597)
                                      .+..++..++. .       .+++..+..|+..|...|+.++|.++++.+. +.+|-....+..
T Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~  342 (349)
T 3q7a_A          263 LPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEF  342 (349)
T ss_dssp             HHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred             cccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHH
Confidence                            34444544444 1       2567788889999999999999999999987 567765444443


Q ss_pred             H
Q 007573          513 L  513 (597)
Q Consensus       513 l  513 (597)
                      .
T Consensus       343 ~  343 (349)
T 3q7a_A          343 R  343 (349)
T ss_dssp             H
T ss_pred             H
Confidence            3

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.29  E-value=0.0002  Score=67.43  Aligned_cols=189  Identities=11%  Similarity=0.007  Sum_probs=91.0

Q ss_pred             hHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcC--CHHHHHHHHhccC---CCChhhHHHHHHHHHHcCC-HHHHHHHH
Q 007573          320 LNEGRQSHVLVIRNGFEANVSVCNAVITMYSRCG--GILDSELAFRQIH---SPNLVSWNTIIAAFAQHGH-YEKALIFF  393 (597)
Q Consensus       320 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~-~~~A~~~~  393 (597)
                      ++++..++..++... +-+..+|+.-...+.+.|  .++++..+++.+.   +.|..+|+.-.-.+...|. ++++++.+
T Consensus        90 l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~  168 (331)
T 3dss_A           90 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFT  168 (331)
T ss_dssp             HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence            445555555555544 334455555555555555  3566666666554   4555566665555555665 46666666


Q ss_pred             HHHHHCCCCCChHHHHHHHHHHhcc--------------CcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhc-----
Q 007573          394 SQMGLNGFDPDGITFLSLLSACGHA--------------GKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRA-----  454 (597)
Q Consensus       394 ~~m~~~g~~p~~~~~~~ll~~~~~~--------------g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-----  454 (597)
                      .++.+.. +-|...|+.....+.+.              +.++++++.+......  .+-|...|+.+-..+.+.     
T Consensus       169 ~~~I~~~-p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~--~P~d~SaW~Y~r~ll~~~~~~~~  245 (331)
T 3dss_A          169 DSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT--DPNDQSAWFYHRWLLGAGSGRCE  245 (331)
T ss_dssp             HHHHHHC-SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHSSSCGGG
T ss_pred             HHHHHHC-CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccCccc
Confidence            6666543 23344444433333322              3355566666555542  122344444443333333     


Q ss_pred             ------CCHHHHHHHHhhCC-CCCCHHHHHHHHHH-----HHhcCCHHHHHHHHHHHHhcCCCCCchHHHH
Q 007573          455 ------GQLEKAWQITQGMP-FEADTGVWGSLLAA-----CVINLNVELGELAAKKMRELDPQNSAVYVML  513 (597)
Q Consensus       455 ------g~~~~A~~~~~~~~-~~p~~~~~~~l~~~-----~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l  513 (597)
                            +.++++++.++++. ..||. .|..+..+     ....|..++....+.++.+++|....-|..+
T Consensus       246 ~~~~~~~~l~~el~~~~elle~~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~  315 (331)
T 3dss_A          246 LSVEKSTVLQSELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDL  315 (331)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHHHhhCccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHH
Confidence                  23455555555443 33432 22211111     1123445555555555555555544434333

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.29  E-value=4.7e-06  Score=77.91  Aligned_cols=113  Identities=8%  Similarity=-0.140  Sum_probs=91.7

Q ss_pred             ChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHH
Q 007573          404 DGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMP-FEA-DTGVWGSLLA  481 (597)
Q Consensus       404 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~  481 (597)
                      +...+..+...+...|++++|...|+.+.+.  .+.+...|..+...|.+.|++++|.+.+++.. ..| +...+..++.
T Consensus         3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~   80 (281)
T 2c2l_A            3 SAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ   80 (281)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            4567788888899999999999999998864  22357888899999999999999999998865 455 5668888999


Q ss_pred             HHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 007573          482 ACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYA  518 (597)
Q Consensus       482 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~  518 (597)
                      ++...|++++|+..++++++++|+++..+...++...
T Consensus        81 ~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~  117 (281)
T 2c2l_A           81 CQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSAL  117 (281)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHH
Confidence            9999999999999999999999887555444444433

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=98.28  E-value=5.3e-07  Score=71.68  Aligned_cols=83  Identities=12%  Similarity=0.014  Sum_probs=53.8

Q ss_pred             cCCHHHHHHHHhhCC-C---CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcHHHHH
Q 007573          454 AGQLEKAWQITQGMP-F---EAD-TGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTR  528 (597)
Q Consensus       454 ~g~~~~A~~~~~~~~-~---~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~  528 (597)
                      .|++++|+..|++.. .   .|+ ...+..++.++...|++++|+..++++++.+|+++.++..++.+|...|++++|.+
T Consensus         3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~   82 (117)
T 3k9i_A            3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE   82 (117)
T ss_dssp             ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence            455556666665543 2   132 34566677777777777777777777777777777777777777777777777777


Q ss_pred             HHHHHHhC
Q 007573          529 VRLLMKEQ  536 (597)
Q Consensus       529 ~~~~~~~~  536 (597)
                      .+++..+.
T Consensus        83 ~~~~al~~   90 (117)
T 3k9i_A           83 LLLKIIAE   90 (117)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            77776653

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=98.26  E-value=5e-06  Score=64.92  Aligned_cols=100  Identities=17%  Similarity=0.089  Sum_probs=68.8

Q ss_pred             HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCC---CHHHHHHHHH
Q 007573          406 ITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMP-FEA---DTGVWGSLLA  481 (597)
Q Consensus       406 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p---~~~~~~~l~~  481 (597)
                      ..+..+...+...|++++|...++.+.+.  .+.+...+..+...+...|++++|.+.+++.. ..|   +...+..+..
T Consensus         7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~   84 (112)
T 2kck_A            7 EEYYLEGVLQYDAGNYTESIDLFEKAIQL--DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD   84 (112)
T ss_dssp             TGGGGHHHHHHSSCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence            34455555666666777777776666553  12345566667777777777777777776654 333   4667788888


Q ss_pred             HHHhc-CCHHHHHHHHHHHHhcCCCCC
Q 007573          482 ACVIN-LNVELGELAAKKMRELDPQNS  507 (597)
Q Consensus       482 ~~~~~-g~~~~a~~~~~~~~~~~p~~~  507 (597)
                      .+... |++++|++.++++++..|.++
T Consensus        85 ~~~~~~~~~~~A~~~~~~~~~~~p~~~  111 (112)
T 2kck_A           85 ALRYIEGKEVEAEIAEARAKLEHHHHH  111 (112)
T ss_dssp             HHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred             HHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence            88888 888888888888888888754

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=98.26  E-value=1e-05  Score=65.22  Aligned_cols=108  Identities=6%  Similarity=-0.034  Sum_probs=63.7

Q ss_pred             HHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC-C----CCC----HHHHHH
Q 007573          408 FLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMP-F----EAD----TGVWGS  478 (597)
Q Consensus       408 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~----~p~----~~~~~~  478 (597)
                      +..+...+...|++++|...++...+.  .+.+...+..+...|...|++++|...+++.. .    .++    ..++..
T Consensus         7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (131)
T 1elr_A            7 EKELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR   84 (131)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence            344444445555555555555555442  12234455555555555566666655555443 1    122    556777


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 007573          479 LLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYA  518 (597)
Q Consensus       479 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~  518 (597)
                      ++..+...|++++|...++++++..| ++.....+..+..
T Consensus        85 la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~  123 (131)
T 1elr_A           85 IGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEK  123 (131)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHH
T ss_pred             HHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHH
Confidence            78888888888888888888888887 4555555555443

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=98.25  E-value=4.6e-06  Score=66.59  Aligned_cols=98  Identities=12%  Similarity=-0.000  Sum_probs=66.2

Q ss_pred             HHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHh
Q 007573          408 FLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMP-FEA-DTGVWGSLLAACVI  485 (597)
Q Consensus       408 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~  485 (597)
                      +..+...+.+.|++++|...|+.+.+.  -+.+...+..+..++.+.|++++|+..+++.. ..| +...+..+..++..
T Consensus        20 ~~~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~   97 (121)
T 1hxi_A           20 PMEEGLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN   97 (121)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            334455666677777777777777653  12246667777777777788888777777654 344 56678888888888


Q ss_pred             cCCHHHHHHHHHHHHhcCCCCC
Q 007573          486 NLNVELGELAAKKMRELDPQNS  507 (597)
Q Consensus       486 ~g~~~~a~~~~~~~~~~~p~~~  507 (597)
                      .|++++|+..++++++.+|++.
T Consensus        98 ~g~~~~A~~~~~~al~~~P~~~  119 (121)
T 1hxi_A           98 EHNANAALASLRAWLLSQPQYE  119 (121)
T ss_dssp             HHHHHHHHHHHHHHHC------
T ss_pred             cCCHHHHHHHHHHHHHhCcCCC
Confidence            8889999999999888888754

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=98.24  E-value=7.3e-06  Score=68.92  Aligned_cols=93  Identities=17%  Similarity=0.044  Sum_probs=63.5

Q ss_pred             HHHHHHHHHhhcCCHHHHHHHHhhCC----CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC------CCc
Q 007573          443 HYTCLVDILSRAGQLEKAWQITQGMP----FEAD----TGVWGSLLAACVINLNVELGELAAKKMRELDPQ------NSA  508 (597)
Q Consensus       443 ~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~------~~~  508 (597)
                      .+..+...+...|++++|.+.+++..    ..++    ...+..+...+...|++++|...++++++..+.      ...
T Consensus        51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~  130 (164)
T 3ro3_A           51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR  130 (164)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence            44455555666666666666555432    0111    335667777788888888888888888765321      145


Q ss_pred             hHHHHHHHHHhcCCcHHHHHHHHHHHh
Q 007573          509 VYVMLSNLYAAAGMWRDVTRVRLLMKE  535 (597)
Q Consensus       509 ~~~~l~~~~~~~g~~~~A~~~~~~~~~  535 (597)
                      .+..++.+|...|++++|.+.+++..+
T Consensus       131 ~~~~la~~~~~~g~~~~A~~~~~~a~~  157 (164)
T 3ro3_A          131 ACWSLGNAYTALGNHDQAMHFAEKHLE  157 (164)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            678889999999999999999888765

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.23  E-value=0.00021  Score=67.29  Aligned_cols=179  Identities=9%  Similarity=0.052  Sum_probs=131.7

Q ss_pred             HHHHHHHHhccC---CCChhhHHHHHHHHHHcCC--HHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCc-HHHHHHHH
Q 007573          355 ILDSELAFRQIH---SPNLVSWNTIIAAFAQHGH--YEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGK-VNESMDLF  428 (597)
Q Consensus       355 ~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~-~~~a~~~~  428 (597)
                      ++++..+++.+.   +.+..+|+.-...+...|+  ++++++++.++.+.. +-|...|+.-...+...|. ++++.+.+
T Consensus        90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~  168 (331)
T 3dss_A           90 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFT  168 (331)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence            456666666655   6788899988888888884  899999999999864 4466777777777777787 68999999


Q ss_pred             HHhHHhcCCCCChHHHHHHHHHHhhc--------------CCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhc------
Q 007573          429 ELMVKVYGIIPSSEHYTCLVDILSRA--------------GQLEKAWQITQGMP-FEA-DTGVWGSLLAACVIN------  486 (597)
Q Consensus       429 ~~~~~~~~~~p~~~~~~~l~~~~~~~--------------g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~------  486 (597)
                      +.+++.  -+-+...|+....++.+.              +.++++++.+.+.. ..| |...|+-+-..+...      
T Consensus       169 ~~~I~~--~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~  246 (331)
T 3dss_A          169 DSLITR--NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCEL  246 (331)
T ss_dssp             HHHHHH--CSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGC
T ss_pred             HHHHHH--CCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCcccc
Confidence            999875  234566777766666555              45788998888765 444 677887666555544      


Q ss_pred             -----CCHHHHHHHHHHHHhcCCCCCchHHHHHHH---HHhcCCcHHHHHHHHHHHhC
Q 007573          487 -----LNVELGELAAKKMRELDPQNSAVYVMLSNL---YAAAGMWRDVTRVRLLMKEQ  536 (597)
Q Consensus       487 -----g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~---~~~~g~~~~A~~~~~~~~~~  536 (597)
                           +.++++++.++++++++|++...+..++..   ....|..++....+.++.+.
T Consensus       247 ~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~  304 (331)
T 3dss_A          247 SVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAV  304 (331)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHh
Confidence                 457899999999999999985555444332   22467788888899888764

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=98.22  E-value=1.7e-05  Score=76.27  Aligned_cols=129  Identities=9%  Similarity=-0.040  Sum_probs=103.1

Q ss_pred             ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC----------------hHHHHHHHHHHhccCcHHHHHHHHHHhH
Q 007573          369 NLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPD----------------GITFLSLLSACGHAGKVNESMDLFELMV  432 (597)
Q Consensus       369 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----------------~~~~~~ll~~~~~~g~~~~a~~~~~~~~  432 (597)
                      +...|..+...+.+.|++++|+..|++..+..  |+                ...+..+..++.+.|++++|...++++.
T Consensus       146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al  223 (336)
T 1p5q_A          146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWL--EYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKAL  223 (336)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh--hccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            34567778888888899999999988888753  33                3788888889999999999999999988


Q ss_pred             HhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHH-HHHHHHHHh
Q 007573          433 KVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMP-FEA-DTGVWGSLLAACVINLNVELG-ELAAKKMRE  501 (597)
Q Consensus       433 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a-~~~~~~~~~  501 (597)
                      +.  .+.+...+..+..+|...|++++|...|++.. ..| +...+..+..++...|+.++| ...++++++
T Consensus       224 ~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~  293 (336)
T 1p5q_A          224 EL--DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE  293 (336)
T ss_dssp             HH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             Hh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            64  23357888889999999999999999998875 444 567888888889999999888 456777764

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=98.22  E-value=1.9e-06  Score=83.00  Aligned_cols=147  Identities=10%  Similarity=-0.032  Sum_probs=77.9

Q ss_pred             hhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHH
Q 007573          371 VSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDI  450 (597)
Q Consensus       371 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~  450 (597)
                      ..+..+...+.+.|++++|+..|++....  .|+...       +...|+.+++...+.           ...|..+..+
T Consensus       180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~-----------~~~~~nla~~  239 (338)
T 2if4_A          180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK-----------NPCHLNIAAC  239 (338)
T ss_dssp             HHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH-----------THHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH-----------HHHHHHHHHH
Confidence            35566666677778888888888877653  343321       223344444332221           1367778888


Q ss_pred             HhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHH-HHhcCCcHHHH
Q 007573          451 LSRAGQLEKAWQITQGMP-FEA-DTGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNL-YAAAGMWRDVT  527 (597)
Q Consensus       451 ~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~-~~~~g~~~~A~  527 (597)
                      |.+.|++++|...+++.. ..| +...|..+..++...|++++|+..|+++++++|+++.++..+..+ ....+..+++.
T Consensus       240 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~  319 (338)
T 2if4_A          240 LIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQK  319 (338)
T ss_dssp             HHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            889999999999888765 344 567888889999999999999999999999999988888888877 44456777788


Q ss_pred             HHHHHHHhCC
Q 007573          528 RVRLLMKEQG  537 (597)
Q Consensus       528 ~~~~~~~~~~  537 (597)
                      +.|++|.+..
T Consensus       320 ~~~~~~l~~~  329 (338)
T 2if4_A          320 EMYKGIFKGK  329 (338)
T ss_dssp             ----------
T ss_pred             HHHHHhhCCC
Confidence            8888876544

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=98.21  E-value=2.2e-05  Score=63.17  Aligned_cols=104  Identities=12%  Similarity=-0.006  Sum_probs=67.5

Q ss_pred             HHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCCC----HHHHHHHHHHHH
Q 007573          411 LLSACGHAGKVNESMDLFELMVKVYGIIPS-SEHYTCLVDILSRAGQLEKAWQITQGMP-FEAD----TGVWGSLLAACV  484 (597)
Q Consensus       411 ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~----~~~~~~l~~~~~  484 (597)
                      +...+...|++++|...|+.+.+...-.+. ...+..+..++.+.|++++|...+++.. ..|+    ...+..+..++.
T Consensus         8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~   87 (129)
T 2xev_A            8 VAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQY   87 (129)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHH
Confidence            344455566666666666666553211111 1355566667777777777777776654 2333    456777888888


Q ss_pred             hcCCHHHHHHHHHHHHhcCCCCCchHHHHH
Q 007573          485 INLNVELGELAAKKMRELDPQNSAVYVMLS  514 (597)
Q Consensus       485 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~  514 (597)
                      ..|++++|+..++++++..|+++.......
T Consensus        88 ~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~  117 (129)
T 2xev_A           88 GEGKNTEAQQTLQQVATQYPGSDAARVAQE  117 (129)
T ss_dssp             HTTCHHHHHHHHHHHHHHSTTSHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHHCCCChHHHHHHH
Confidence            899999999999999999888765544333

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.20  E-value=1.1e-05  Score=80.76  Aligned_cols=164  Identities=8%  Similarity=-0.069  Sum_probs=116.1

Q ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCCh----HHHHHHHHHHhccCcHHHHHHHHHHhHHhc---CCCCC-hH
Q 007573          372 SWNTIIAAFAQHGHYEKALIFFSQMGLN-GFDPDG----ITFLSLLSACGHAGKVNESMDLFELMVKVY---GIIPS-SE  442 (597)
Q Consensus       372 ~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~~p~-~~  442 (597)
                      ++..++..|...|++++|.+++.++... +..++.    .+.+.+...+...|+.+.+..+++......   +..+. ..
T Consensus        57 al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~  136 (434)
T 4b4t_Q           57 SILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHS  136 (434)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHH
Confidence            3566778888888888888888776542 111222    123333344556788899988887765421   22232 56


Q ss_pred             HHHHHHHHHhhcCCHHHHHHHHhhCC-------CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC---CCC----C
Q 007573          443 HYTCLVDILSRAGQLEKAWQITQGMP-------FEAD-TGVWGSLLAACVINLNVELGELAAKKMRELD---PQN----S  507 (597)
Q Consensus       443 ~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---p~~----~  507 (597)
                      ++..++..|...|++++|..++++..       .+|. ..++..++..|...|++++|...+++++...   +.+    .
T Consensus       137 ~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~  216 (434)
T 4b4t_Q          137 LSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVA  216 (434)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred             HHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHH
Confidence            77889999999999999999887653       1222 4478888888999999999999999988753   222    3


Q ss_pred             chHHHHHHHHHhcCCcHHHHHHHHHHHh
Q 007573          508 AVYVMLSNLYAAAGMWRDVTRVRLLMKE  535 (597)
Q Consensus       508 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~  535 (597)
                      ..+..++..+...|++++|.+.+....+
T Consensus       217 ~~~~~~g~~~~~~~~y~~A~~~~~~a~~  244 (434)
T 4b4t_Q          217 ELDLMSGILHCEDKDYKTAFSYFFESFE  244 (434)
T ss_dssp             HHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            4567778888899999999988877754

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=98.16  E-value=5.1e-06  Score=70.35  Aligned_cols=76  Identities=13%  Similarity=0.073  Sum_probs=63.0

Q ss_pred             hHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-chHHHHHHH
Q 007573          441 SEHYTCLVDILSRAGQLEKAWQITQGMP-FEA-DTGVWGSLLAACVINLNVELGELAAKKMRELDPQNS-AVYVMLSNL  516 (597)
Q Consensus       441 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~-~~~~~l~~~  516 (597)
                      ...|..+..+|.+.|++++|...+++.. ..| +...|..++.++...|++++|+..++++++++|+++ .+...+..+
T Consensus        63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~  141 (162)
T 3rkv_A           63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIV  141 (162)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence            4678888889999999999999988765 344 577899999999999999999999999999999987 444444443

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=98.16  E-value=2.4e-05  Score=63.01  Aligned_cols=31  Identities=6%  Similarity=-0.201  Sum_probs=21.0

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 007573          475 VWGSLLAACVINLNVELGELAAKKMRELDPQ  505 (597)
Q Consensus       475 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~  505 (597)
                      +|..++.++...|++++|+..|+++++..|+
T Consensus        85 ~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~  115 (127)
T 4gcn_A           85 AMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD  115 (127)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence            4555666667777777777777777776664

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=98.15  E-value=1.8e-06  Score=68.58  Aligned_cols=92  Identities=13%  Similarity=0.035  Sum_probs=65.6

Q ss_pred             cCcHHHHHHHHHHhHHhcCC-CC-ChHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHH
Q 007573          418 AGKVNESMDLFELMVKVYGI-IP-SSEHYTCLVDILSRAGQLEKAWQITQGMP-FEA-DTGVWGSLLAACVINLNVELGE  493 (597)
Q Consensus       418 ~g~~~~a~~~~~~~~~~~~~-~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~  493 (597)
                      .|++++|...|++..+. +. .| +...+..+..+|.+.|++++|.+.+++.. ..| +...+..+..++...|++++|+
T Consensus         3 ~g~~~~A~~~~~~al~~-~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~   81 (117)
T 3k9i_A            3 LGLEAQAVPYYEKAIAS-GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV   81 (117)
T ss_dssp             ----CCCHHHHHHHHSS-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred             CCcHHHHHHHHHHHHHc-CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence            46667777777776642 10 13 25567777788888888888888887765 334 5668888888899999999999


Q ss_pred             HHHHHHHhcCCCCCchH
Q 007573          494 LAAKKMRELDPQNSAVY  510 (597)
Q Consensus       494 ~~~~~~~~~~p~~~~~~  510 (597)
                      ..++++++..|+++...
T Consensus        82 ~~~~~al~~~p~~~~~~   98 (117)
T 3k9i_A           82 ELLLKIIAETSDDETIQ   98 (117)
T ss_dssp             HHHHHHHHHHCCCHHHH
T ss_pred             HHHHHHHHhCCCcHHHH
Confidence            99999999999886543

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=98.15  E-value=9.1e-06  Score=79.12  Aligned_cols=89  Identities=10%  Similarity=-0.005  Sum_probs=78.3

Q ss_pred             hHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 007573          441 SEHYTCLVDILSRAGQLEKAWQITQGMP-FEA-DTGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYA  518 (597)
Q Consensus       441 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~  518 (597)
                      ...|..+..+|.+.|++++|++.+++.. ..| +...|..+..++...|++++|+..++++++++|++..++..+..++.
T Consensus       273 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~  352 (370)
T 1ihg_A          273 LSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQ  352 (370)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            5678889999999999999999998865 455 56789999999999999999999999999999999999999999999


Q ss_pred             hcCCcHHHHHH
Q 007573          519 AAGMWRDVTRV  529 (597)
Q Consensus       519 ~~g~~~~A~~~  529 (597)
                      ..++.+++.+.
T Consensus       353 ~~~~~~~a~k~  363 (370)
T 1ihg_A          353 KIKAQKDKEKA  363 (370)
T ss_dssp             HHHHHHHHHHC
T ss_pred             HHHHHHHHHHH
Confidence            98888877653

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.14  E-value=8.4e-05  Score=76.53  Aligned_cols=169  Identities=9%  Similarity=-0.073  Sum_probs=134.4

Q ss_pred             CHHHHHHHHhccC---CCChhhHHHHHHHHHHcCC----------HHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccC-
Q 007573          354 GILDSELAFRQIH---SPNLVSWNTIIAAFAQHGH----------YEKALIFFSQMGLNGFDPDGITFLSLLSACGHAG-  419 (597)
Q Consensus       354 ~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g-  419 (597)
                      ..++|.+.++.+.   +.+..+|+.--..+...|+          ++++++.++++.+.. +-+..+|..-..++.+.| 
T Consensus        44 ~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~  122 (567)
T 1dce_A           44 LDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPE  122 (567)
T ss_dssp             CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSS
T ss_pred             CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccc
Confidence            3456677777665   4556678777666666666          899999999998753 345667887777888888 


Q ss_pred             -cHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcC-CHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhc---------
Q 007573          420 -KVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAG-QLEKAWQITQGMP-FEA-DTGVWGSLLAACVIN---------  486 (597)
Q Consensus       420 -~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~---------  486 (597)
                       +++++.+.++++.+.  -+-+...|+.-..++.+.| ..+++.+.++++. ..| +...|+.....+...         
T Consensus       123 ~~~~~el~~~~k~l~~--d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~  200 (567)
T 1dce_A          123 PNWARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQ  200 (567)
T ss_dssp             CCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSC
T ss_pred             ccHHHHHHHHHHHHhh--ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccccc
Confidence             779999999999875  2335778888888888889 8999999998876 445 677888888776653         


Q ss_pred             -----CCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcHH
Q 007573          487 -----LNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRD  525 (597)
Q Consensus       487 -----g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~  525 (597)
                           +.++++++.+.++++.+|++..+|..+.+++...++.++
T Consensus       201 ~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~  244 (567)
T 1dce_A          201 GRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV  244 (567)
T ss_dssp             CSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred             ccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence                 567999999999999999999999999999999988655

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=98.13  E-value=2.3e-05  Score=78.70  Aligned_cols=123  Identities=15%  Similarity=0.025  Sum_probs=92.9

Q ss_pred             HhccCcHHHHHHHHHHhHHhcC--CC---CC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC---------CCCCH-HHHHH
Q 007573          415 CGHAGKVNESMDLFELMVKVYG--II---PS-SEHYTCLVDILSRAGQLEKAWQITQGMP---------FEADT-GVWGS  478 (597)
Q Consensus       415 ~~~~g~~~~a~~~~~~~~~~~~--~~---p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~---------~~p~~-~~~~~  478 (597)
                      +...|++++|..++++..+...  +.   |+ ..+++.|+.+|...|++++|+.++++..         ..|+. .+++.
T Consensus       319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n  398 (490)
T 3n71_A          319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR  398 (490)
T ss_dssp             HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred             HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence            4466777777777766654321  11   22 4567788888888888888888877653         33443 37889


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHh-----cCCCCCch---HHHHHHHHHhcCCcHHHHHHHHHHHhCC
Q 007573          479 LLAACVINLNVELGELAAKKMRE-----LDPQNSAV---YVMLSNLYAAAGMWRDVTRVRLLMKEQG  537 (597)
Q Consensus       479 l~~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~  537 (597)
                      |...|..+|++++|+.+++++++     ++|++|.+   ...+..++..+|++++|..+|.++++..
T Consensus       399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~  465 (490)
T 3n71_A          399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA  465 (490)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999986     47887544   4678888999999999999999998744

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=98.10  E-value=1.7e-05  Score=60.75  Aligned_cols=66  Identities=18%  Similarity=0.083  Sum_probs=60.6

Q ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHhC
Q 007573          471 ADTGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRVRLLMKEQ  536 (597)
Q Consensus       471 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  536 (597)
                      .+...|..++..+...|++++|+..++++++++|+++.++..++.+|...|++++|++.+++..+.
T Consensus         5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l   70 (100)
T 3ma5_A            5 EDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV   70 (100)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            356788899999999999999999999999999999999999999999999999999999988764

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=98.08  E-value=6.4e-06  Score=64.32  Aligned_cols=93  Identities=10%  Similarity=-0.113  Sum_probs=75.4

Q ss_pred             ChHHHHHHHHHHhhcCCHHHHHHHHhhCC-C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC------CchHH
Q 007573          440 SSEHYTCLVDILSRAGQLEKAWQITQGMP-F-EADTGVWGSLLAACVINLNVELGELAAKKMRELDPQN------SAVYV  511 (597)
Q Consensus       440 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~  511 (597)
                      +...+..+...+.+.|++++|.+.+++.. . +.+...|..+..++...|++++|+..++++++++|++      ...+.
T Consensus         3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~   82 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY   82 (111)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence            45567778888888888888888888765 3 3467788899999999999999999999999999998      67778


Q ss_pred             HHHHHHHhcCCcHHHHHHHHH
Q 007573          512 MLSNLYAAAGMWRDVTRVRLL  532 (597)
Q Consensus       512 ~l~~~~~~~g~~~~A~~~~~~  532 (597)
                      .++.++...|++++|.+.+++
T Consensus        83 ~~~~~~~~~~~~~~a~~~~~~  103 (111)
T 2l6j_A           83 RLELAQGAVGSVQIPVVEVDE  103 (111)
T ss_dssp             HHHHHHHHHHCCCCCSSSSSS
T ss_pred             HHHHHHHHHHhHhhhHhHHHH
Confidence            888888888877776655543

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=98.08  E-value=1.4e-05  Score=67.16  Aligned_cols=133  Identities=17%  Similarity=0.079  Sum_probs=85.7

Q ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CC----hHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC----hH
Q 007573          372 SWNTIIAAFAQHGHYEKALIFFSQMGLNGFD-PD----GITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPS----SE  442 (597)
Q Consensus       372 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~  442 (597)
                      ++..+...+...|++++|+..+++..+.... ++    ..++..+...+...|++++|...++...+...-.++    ..
T Consensus        11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~   90 (164)
T 3ro3_A           11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ   90 (164)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence            4555566666677777777776665542100 11    135666666777777777777777776543211111    34


Q ss_pred             HHHHHHHHHhhcCCHHHHHHHHhhCC----CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 007573          443 HYTCLVDILSRAGQLEKAWQITQGMP----FEAD----TGVWGSLLAACVINLNVELGELAAKKMRELDP  504 (597)
Q Consensus       443 ~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p  504 (597)
                      .+..+...+...|++++|.+.+++..    ..++    ...+..+...+...|++++|...+++++++..
T Consensus        91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~  160 (164)
T 3ro3_A           91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR  160 (164)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence            56677777888888888888776653    1111    34567778888899999999999999887543

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=98.08  E-value=1.6e-05  Score=65.49  Aligned_cols=68  Identities=15%  Similarity=0.040  Sum_probs=54.3

Q ss_pred             HHHHHHHHHhhcCCHHHHHHHHhhCC-C-------CCCH-HHH----HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch
Q 007573          443 HYTCLVDILSRAGQLEKAWQITQGMP-F-------EADT-GVW----GSLLAACVINLNVELGELAAKKMRELDPQNSAV  509 (597)
Q Consensus       443 ~~~~l~~~~~~~g~~~~A~~~~~~~~-~-------~p~~-~~~----~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~  509 (597)
                      .|..+..++.+.|++++|+..+++.. .       .|+. ..|    ...+.++...|++++|+..|+++++++|++..+
T Consensus        59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~  138 (159)
T 2hr2_A           59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE  138 (159)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHH
Confidence            66667777777777777777666544 4       7764 478    899999999999999999999999999998654


Q ss_pred             H
Q 007573          510 Y  510 (597)
Q Consensus       510 ~  510 (597)
                      +
T Consensus       139 ~  139 (159)
T 2hr2_A          139 T  139 (159)
T ss_dssp             C
T ss_pred             H
Confidence            4

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=98.05  E-value=2.9e-05  Score=78.06  Aligned_cols=95  Identities=8%  Similarity=-0.092  Sum_probs=75.8

Q ss_pred             HHHHHHHHHhhcCCHHHHHHHHhhCC-CCCC----------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 007573          443 HYTCLVDILSRAGQLEKAWQITQGMP-FEAD----------------TGVWGSLLAACVINLNVELGELAAKKMRELDPQ  505 (597)
Q Consensus       443 ~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~----------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~  505 (597)
                      .+..+...|.+.|++++|...|++.. ..|+                ...|..+..++.+.|++++|+..++++++++|+
T Consensus       270 ~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~  349 (457)
T 1kt0_A          270 IVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSA  349 (457)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc
Confidence            34445555555555555555555443 1121                468889999999999999999999999999999


Q ss_pred             CCchHHHHHHHHHhcCCcHHHHHHHHHHHhCC
Q 007573          506 NSAVYVMLSNLYAAAGMWRDVTRVRLLMKEQG  537 (597)
Q Consensus       506 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  537 (597)
                      ++.+|..++.+|...|++++|+..|+++.+..
T Consensus       350 ~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~  381 (457)
T 1kt0_A          350 NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN  381 (457)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred             cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence            99999999999999999999999999998754

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=98.04  E-value=2.2e-05  Score=58.61  Aligned_cols=81  Identities=21%  Similarity=0.205  Sum_probs=63.9

Q ss_pred             hHHHHHHHHHHhhcCCHHHHHHHHhhCC-C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 007573          441 SEHYTCLVDILSRAGQLEKAWQITQGMP-F-EADTGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYA  518 (597)
Q Consensus       441 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~  518 (597)
                      ...+..+...+...|++++|.+.+++.. . +.+...+..+...+...|++++|+..++++++.+|.++.++..++.++.
T Consensus         9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~   88 (91)
T 1na3_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ   88 (91)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence            4566667777788888888888877654 2 3356678888888889999999999999999999988888888888877


Q ss_pred             hcC
Q 007573          519 AAG  521 (597)
Q Consensus       519 ~~g  521 (597)
                      ..|
T Consensus        89 ~~g   91 (91)
T 1na3_A           89 KQG   91 (91)
T ss_dssp             HHC
T ss_pred             hcC
Confidence            654

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.04  E-value=6.6e-05  Score=75.01  Aligned_cols=159  Identities=8%  Similarity=-0.065  Sum_probs=119.6

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHCCCCCC----------------hHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC
Q 007573          377 IAAFAQHGHYEKALIFFSQMGLNGFDPD----------------GITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPS  440 (597)
Q Consensus       377 i~~~~~~g~~~~A~~~~~~m~~~g~~p~----------------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~  440 (597)
                      ...+.+.|++++|++.|.++.+......                ...+..+...|...|++++|.+.+..+.+..+..++
T Consensus        11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~   90 (434)
T 4b4t_Q           11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK   90 (434)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence            3456678899999999988876532211                124778889999999999999999988765433333


Q ss_pred             h----HHHHHHHHHHhhcCCHHHHHHHHhhCC-------CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CC-
Q 007573          441 S----EHYTCLVDILSRAGQLEKAWQITQGMP-------FEAD-TGVWGSLLAACVINLNVELGELAAKKMRELD--PQ-  505 (597)
Q Consensus       441 ~----~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--p~-  505 (597)
                      .    .+.+.+...+...|+.++|.+++++..       ..+. ..++..++..+...|++++|...++++...-  .+ 
T Consensus        91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~  170 (434)
T 4b4t_Q           91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD  170 (434)
T ss_dssp             HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred             hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence            2    234445556667899999999887653       2233 4578889999999999999999999988641  11 


Q ss_pred             ---CCchHHHHHHHHHhcCCcHHHHHHHHHHHh
Q 007573          506 ---NSAVYVMLSNLYAAAGMWRDVTRVRLLMKE  535 (597)
Q Consensus       506 ---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  535 (597)
                         ...++..++.+|...|++++|..++++...
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~  203 (434)
T 4b4t_Q          171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAART  203 (434)
T ss_dssp             STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence               256788999999999999999999998865

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=98.01  E-value=3e-05  Score=75.41  Aligned_cols=65  Identities=9%  Similarity=-0.057  Sum_probs=60.8

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHhC
Q 007573          472 DTGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRVRLLMKEQ  536 (597)
Q Consensus       472 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  536 (597)
                      +...|..+..++...|++++|+..++++++++|+++.++..++.+|...|++++|.+.+++..+.
T Consensus       272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l  336 (370)
T 1ihg_A          272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI  336 (370)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence            35678889999999999999999999999999999999999999999999999999999998864

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=98.00  E-value=4e-06  Score=68.95  Aligned_cols=85  Identities=9%  Similarity=-0.007  Sum_probs=58.7

Q ss_pred             cCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcC
Q 007573          454 AGQLEKAWQITQGMP-FEA-DTGVWGSLLAACVINLN----------VELGELAAKKMRELDPQNSAVYVMLSNLYAAAG  521 (597)
Q Consensus       454 ~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~----------~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g  521 (597)
                      .+.+++|.+.+++.. ..| +...|..+..++...++          +++|+..|+++++++|++..+|..++.+|...|
T Consensus        15 ~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg   94 (158)
T 1zu2_A           15 ILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFA   94 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhc
Confidence            334455555544433 222 44455555555554443          568999999999999999889999999998875


Q ss_pred             -----------CcHHHHHHHHHHHhCCC
Q 007573          522 -----------MWRDVTRVRLLMKEQGV  538 (597)
Q Consensus       522 -----------~~~~A~~~~~~~~~~~~  538 (597)
                                 ++++|++.|++..+...
T Consensus        95 ~l~P~~~~a~g~~~eA~~~~~kAl~l~P  122 (158)
T 1zu2_A           95 FLTPDETEAKHNFDLATQFFQQAVDEQP  122 (158)
T ss_dssp             HHCCCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred             ccCcchhhhhccHHHHHHHHHHHHHhCC
Confidence                       89999999998887553

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=97.96  E-value=9.3e-05  Score=57.50  Aligned_cols=66  Identities=8%  Similarity=-0.106  Sum_probs=61.4

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHhCC
Q 007573          472 DTGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRVRLLMKEQG  537 (597)
Q Consensus       472 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  537 (597)
                      +...|..+...+...|++++|+..++++++.+|+++.++..++.+|...|++++|++.+++..+..
T Consensus         3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~   68 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT   68 (111)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence            456788899999999999999999999999999999999999999999999999999999988644

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=97.95  E-value=4.8e-05  Score=76.37  Aligned_cols=117  Identities=9%  Similarity=-0.022  Sum_probs=90.4

Q ss_pred             HHHhhcCCHHHHHHHHhhCC---------CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----cCCCC---CchH
Q 007573          449 DILSRAGQLEKAWQITQGMP---------FEAD-TGVWGSLLAACVINLNVELGELAAKKMRE-----LDPQN---SAVY  510 (597)
Q Consensus       449 ~~~~~~g~~~~A~~~~~~~~---------~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~p~~---~~~~  510 (597)
                      ..+...|++++|+.++++..         ..|+ ..+++.|+.+|...|++++|+.+++++++     ++|++   ...+
T Consensus       317 ~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l  396 (490)
T 3n71_A          317 DKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAV  396 (490)
T ss_dssp             HHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred             HHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence            34667899999998887653         2333 34789999999999999999999999986     46766   4567


Q ss_pred             HHHHHHHHhcCCcHHHHHHHHHHHhCCCccCCCeeEEEECCEEEEEEeCCCCCcchHHHHHHHHHHHHHHhhc
Q 007573          511 VMLSNLYAAAGMWRDVTRVRLLMKEQGVTKQCAYSWIEIGNKVHYFLGGDMSHPCIDKIHLELKRASVQMKSV  583 (597)
Q Consensus       511 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~  583 (597)
                      +.|+.+|..+|++++|..++++..+...+                  .-...||...++...+.+....+++.
T Consensus       397 ~nLa~~~~~~G~~~eA~~~~~~Al~i~~~------------------~lG~~Hp~~~~~~~~l~~~~~e~~~~  451 (490)
T 3n71_A          397 MRAGLTNWHAGHIEVGHGMICKAYAILLV------------------THGPSHPITKDLEAMRMQTEMELRMF  451 (490)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHH------------------HTCTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHHH------------------HhCCCChHHHHHHHHHHHHHHHHHHH
Confidence            89999999999999999999998763210                  01125999999988888877655543

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=97.95  E-value=2.1e-05  Score=75.68  Aligned_cols=150  Identities=8%  Similarity=0.003  Sum_probs=82.6

Q ss_pred             ccHHHHHHHHHHhcCCHHHHHHHHhccC--CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHh
Q 007573          339 VSVCNAVITMYSRCGGILDSELAFRQIH--SPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACG  416 (597)
Q Consensus       339 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~  416 (597)
                      ...+..+...+.+.|++++|...|++..  .|+...       +...|+.+++...+.          ...|..+..++.
T Consensus       179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~~~  241 (338)
T 2if4_A          179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAACLI  241 (338)
T ss_dssp             HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHHHH
Confidence            3457778888899999999999998865  232221       222334444443321          136778888999


Q ss_pred             ccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCCC-HHHHHHHHHH-HHhcCCHHHHH
Q 007573          417 HAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMP-FEAD-TGVWGSLLAA-CVINLNVELGE  493 (597)
Q Consensus       417 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~-~~~~g~~~~a~  493 (597)
                      +.|++++|...++...+.  -+.+...|..+..+|...|++++|.+.|++.. ..|+ ...+..+... ....+..+.+.
T Consensus       242 ~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~  319 (338)
T 2if4_A          242 KLKRYDEAIGHCNIVLTE--EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQK  319 (338)
T ss_dssp             TTTCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred             HcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999998864  23357888999999999999999999999876 5564 4455555555 34556778899


Q ss_pred             HHHHHHHhcCCCCC
Q 007573          494 LAAKKMRELDPQNS  507 (597)
Q Consensus       494 ~~~~~~~~~~p~~~  507 (597)
                      ..|.++++..|.++
T Consensus       320 ~~~~~~l~~~p~~~  333 (338)
T 2if4_A          320 EMYKGIFKGKDEGG  333 (338)
T ss_dssp             --------------
T ss_pred             HHHHHhhCCCCCCC
Confidence            99999999998864

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=97.94  E-value=3.5e-05  Score=60.67  Aligned_cols=77  Identities=9%  Similarity=-0.027  Sum_probs=61.0

Q ss_pred             HHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHhC
Q 007573          460 AWQITQGMP-FEA-DTGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRVRLLMKEQ  536 (597)
Q Consensus       460 A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  536 (597)
                      |.+.+++.. ..| +...+..+...+...|++++|+..++++++.+|+++.++..++.+|...|++++|.+.+++..+.
T Consensus         4 a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~   82 (115)
T 2kat_A            4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA   82 (115)
T ss_dssp             HHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            444444432 234 56678888888888899999999999999999988888889999999999999999998887764

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.88  E-value=7.3e-05  Score=55.89  Aligned_cols=69  Identities=10%  Similarity=0.076  Sum_probs=60.7

Q ss_pred             CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHhCCC
Q 007573          470 EADTGVWGSLLAACVINLN---VELGELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRVRLLMKEQGV  538 (597)
Q Consensus       470 ~p~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  538 (597)
                      ++++..+..+..++...++   .++|...++++++.+|+++.+...++..+...|++++|+..|+++.+...
T Consensus         3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p   74 (93)
T 3bee_A            3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSND   74 (93)
T ss_dssp             CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCC
T ss_pred             CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            4567788888888755544   69999999999999999999999999999999999999999999988664

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=97.84  E-value=0.00015  Score=71.63  Aligned_cols=116  Identities=14%  Similarity=0.141  Sum_probs=87.7

Q ss_pred             HHHHhhcCCHHHHHHHHhhCC------CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----cCCCC---Cch
Q 007573          448 VDILSRAGQLEKAWQITQGMP------FEAD----TGVWGSLLAACVINLNVELGELAAKKMRE-----LDPQN---SAV  509 (597)
Q Consensus       448 ~~~~~~~g~~~~A~~~~~~~~------~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~p~~---~~~  509 (597)
                      +..+.+.|++++|+.++++..      ..|+    ..+++.|+.+|...|++++|+.+++++++     .+|++   ...
T Consensus       294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~  373 (429)
T 3qwp_A          294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ  373 (429)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred             HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence            344556778888877776542      2333    34788899999999999999999999986     35665   456


Q ss_pred             HHHHHHHHHhcCCcHHHHHHHHHHHhCCCccCCCeeEEEECCEEEEEEeCCCCCcchHHHHHHHHHHHHHHh
Q 007573          510 YVMLSNLYAAAGMWRDVTRVRLLMKEQGVTKQCAYSWIEIGNKVHYFLGGDMSHPCIDKIHLELKRASVQMK  581 (597)
Q Consensus       510 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~  581 (597)
                      +..|+.+|..+|++++|..++++..+.-. .                 .-...||...+++..|.+....++
T Consensus       374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~-~-----------------~lG~~Hp~~~~~~~~l~~~~~e~~  427 (429)
T 3qwp_A          374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMR-V-----------------THGREHSLIEDLILLLEECDANIR  427 (429)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHH-H-----------------HTCTTSHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHHH-H-----------------hcCCCChHHHHHHHHHHHHHHHHh
Confidence            78999999999999999999999876321 0                 011259999999999998887765

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=97.80  E-value=0.00031  Score=57.27  Aligned_cols=89  Identities=10%  Similarity=-0.114  Sum_probs=48.3

Q ss_pred             HHHHHhhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHh---
Q 007573          447 LVDILSRAGQLEKAWQITQGMPFEADTGVWGSLLAACVI----NLNVELGELAAKKMRELDPQNSAVYVMLSNLYAA---  519 (597)
Q Consensus       447 l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~---  519 (597)
                      |...|...+..++|.+.|++.....+...+..|...|..    .+++++|+..++++.+.  .++..+..|+.+|..   
T Consensus        31 lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g  108 (138)
T 1klx_A           31 LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKG  108 (138)
T ss_dssp             HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSS
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCC
Confidence            333333333444444444433322344444555555544    55666666666666654  345566666666666   


Q ss_pred             -cCCcHHHHHHHHHHHhCC
Q 007573          520 -AGMWRDVTRVRLLMKEQG  537 (597)
Q Consensus       520 -~g~~~~A~~~~~~~~~~~  537 (597)
                       .+++++|.+++++..+.|
T Consensus       109 ~~~d~~~A~~~~~~Aa~~g  127 (138)
T 1klx_A          109 VVKNEKQAVKTFEKACRLG  127 (138)
T ss_dssp             SCCCHHHHHHHHHHHHHTT
T ss_pred             CCcCHHHHHHHHHHHHHCC
Confidence             666666666666666554

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=97.74  E-value=0.0001  Score=72.69  Aligned_cols=103  Identities=12%  Similarity=0.059  Sum_probs=75.6

Q ss_pred             cCCHHHHHHHHhhCC---------CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----cCCCC---CchHHHHHH
Q 007573          454 AGQLEKAWQITQGMP---------FEAD-TGVWGSLLAACVINLNVELGELAAKKMRE-----LDPQN---SAVYVMLSN  515 (597)
Q Consensus       454 ~g~~~~A~~~~~~~~---------~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~p~~---~~~~~~l~~  515 (597)
                      .|++++|+.++++..         ..|+ ..+++.|+.+|...|++++|+.+++++++     ++|++   ...++.|+.
T Consensus       311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~  390 (433)
T 3qww_A          311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR  390 (433)
T ss_dssp             TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence            456666666665432         2233 34788899999999999999999999986     46666   456889999


Q ss_pred             HHHhcCCcHHHHHHHHHHHhCCCccCCCeeEEEECCEEEEEEeCCCCCcchHHHHHHHH
Q 007573          516 LYAAAGMWRDVTRVRLLMKEQGVTKQCAYSWIEIGNKVHYFLGGDMSHPCIDKIHLELK  574 (597)
Q Consensus       516 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~p~~~~~~~~l~  574 (597)
                      +|..+|++++|..++++..+...+                  .-...||...++...|+
T Consensus       391 ~~~~qg~~~eA~~~~~~Al~i~~~------------------~lG~~Hp~~~~l~~~l~  431 (433)
T 3qww_A          391 LYMGLENKAAGEKALKKAIAIMEV------------------AHGKDHPYISEIKQEIE  431 (433)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHH------------------HTCTTCHHHHHHHHHHH
T ss_pred             HHHhccCHHHHHHHHHHHHHHHHH------------------HcCCCChHHHHHHHHHh
Confidence            999999999999999998763210                  01125998888877765

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=97.67  E-value=0.0007  Score=69.67  Aligned_cols=150  Identities=13%  Similarity=0.019  Sum_probs=122.1

Q ss_pred             CCHHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHhccCc----------HHHHHHHHHHhHHhcCCCCChHHHHHHHHHHh
Q 007573          384 GHYEKALIFFSQMGLNGFDPD-GITFLSLLSACGHAGK----------VNESMDLFELMVKVYGIIPSSEHYTCLVDILS  452 (597)
Q Consensus       384 g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~----------~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~  452 (597)
                      ...++|++.++++...  .|+ ...|+.--.++...|+          ++++.+.++.+.+.  -+-+..+|..-..++.
T Consensus        43 ~~~eeal~~~~~~l~~--nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--~pK~y~aW~hR~w~l~  118 (567)
T 1dce_A           43 ELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSYGTWHHRCWLLS  118 (567)
T ss_dssp             CCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH
Confidence            3457889999999875  565 4456655556666666          89999999999875  2345778888888899


Q ss_pred             hcC--CHHHHHHHHhhCC--CCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhc-------
Q 007573          453 RAG--QLEKAWQITQGMP--FEADTGVWGSLLAACVINL-NVELGELAAKKMRELDPQNSAVYVMLSNLYAAA-------  520 (597)
Q Consensus       453 ~~g--~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~-------  520 (597)
                      +.|  +++++.+.++++.  .+-+..+|+.-..+....| .++++++.++++++.+|.+..+|...+.++.+.       
T Consensus       119 ~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~  198 (567)
T 1dce_A          119 RLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSG  198 (567)
T ss_dssp             TCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred             HcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccc
Confidence            999  7799999999887  3446789999998888889 899999999999999999999999999998874       


Q ss_pred             -------CCcHHHHHHHHHHHhCC
Q 007573          521 -------GMWRDVTRVRLLMKEQG  537 (597)
Q Consensus       521 -------g~~~~A~~~~~~~~~~~  537 (597)
                             +.++++.+.+++.....
T Consensus       199 ~~~~~~~~~~~eel~~~~~ai~~~  222 (567)
T 1dce_A          199 PQGRLPENVLLKELELVQNAFFTD  222 (567)
T ss_dssp             SCCSSCHHHHHHHHHHHHHHHHHC
T ss_pred             ccccccHHHHHHHHHHHHHHHhhC
Confidence                   56789999988887644

>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A

Probab=97.63  E-value=1.8e-06  Score=82.64  Aligned_cols=254  Identities=13%  Similarity=0.103  Sum_probs=114.3

Q ss_pred             chHHHHHHHHHhcCChHHHHHHHhhcCCCCcchHHHHHHHHHhCCChhHHHHHHhhCCCC--CcchHHHHHHHHHcCCCh
Q 007573           51 FVNNAKISALSRAGKISAARQLFDQMTTKDVITWNAIITGYWQNGFLQESKNLFQSMPVK--NIVSWNCMIAGCIDNDRI  128 (597)
Q Consensus        51 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~ll~~~~~~~~~  128 (597)
                      .+|+.|..++.+.|++.+|+..|=  ...|+..|..+|.+..+.|.+++-+..+....+.  ++..=+.|+-+|++.+++
T Consensus        55 ~VWs~LgkAqL~~~~v~eAIdsyI--kA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~IDteLi~ayAk~~rL  132 (624)
T 3lvg_A           55 AVWSQLAKAQLQKGMVKEAIDSYI--KADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRL  132 (624)
T ss_dssp             CCSSSHHHHTTTSSSCTTTTTSSC--CCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTTTTHHHHHHHHTSCSS
T ss_pred             cHHHHHHHHHHccCchHHHHHHHH--hCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccHHHHHHHHHhhCcH
Confidence            344445555544444444444331  1223333444444444445555444444444332  333444444444444443


Q ss_pred             HHHHHHHccCCCCChhhHHHHHHHHHcCCChHHHHHHHccCCCCCchhHHHHHHHHHhCCChhHHHHHHHhcccCCcchH
Q 007573          129 DDAFDYFQAMPERNTATYNAMISGFLKHGRLEEATRLFEQMPRRNVISYTAMLDGFMKKGEVDKARALSDYMSFKNVVSW  208 (597)
Q Consensus       129 ~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~  208 (597)
                      .+-.+.+   ..||..-...+..-|...|.++.|.-+|..+..     |.-|...+.+.|++..|.+.-+  ...++.||
T Consensus       133 ~elEefl---~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN-----~akLAstLV~L~~yq~AVdaAr--KAns~ktW  202 (624)
T 3lvg_A          133 AELEEFI---NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN-----FGRLASTLVHLGEYQAAVDGAR--KANSTRTW  202 (624)
T ss_dssp             STTTSTT---SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCC-----CTTTSSSSSSCSGGGSSTTTTT--TCCSSCSH
T ss_pred             HHHHHHH---cCCCcccHHHHHHHHHHccCHHHHHHHHHhCcc-----HHHHHHHHHHHHHHHHHHHHHH--hcCChhHH
Confidence            3222111   123333333444444444444444444443321     1222222333333333322211  12356777


Q ss_pred             HHHHHHHHcCCChHHHHHHHhhcCCCCCCchHHHHHHHHHHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCCh
Q 007573          209 TVMITGYVKNERFCEARELFYRMPDYDKNVFVVTAMITGFCKVGMLENARLLFERIQ---PKDCVSFNAMIAGYAQNGVA  285 (597)
Q Consensus       209 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~  285 (597)
                      ..+-.+|...+.+..|...=-.+.- .+  .-...++..|-+.|.+++-+.+++.-.   ......|+.|.-.|++- ++
T Consensus       203 KeV~~ACvd~~EfrLAqicGLniIv-ha--deL~elv~~YE~~G~f~ELIsLlEaglglErAHmGmFTELaILYsKY-~P  278 (624)
T 3lvg_A          203 KEVCFACVDGKEFRLAQMCGLHIVV-HA--DELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKF-KP  278 (624)
T ss_dssp             HHHTHHHHHSCTTTTTTHHHHHHHC-CS--SCCSGGGSSSSTTCCCTTSTTTHHHHTTSTTCCHHHHHHHHHHHHSS-CT
T ss_pred             HHHHHHHhCchHHHHHHHhcchhcc-cH--HHHHHHHHHHHhCCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhc-CH
Confidence            7777777777776654332111110 01  111235556667777777777776643   23455677777666665 45


Q ss_pred             hHHHHHHHHhHHCCCCCCHHHHHHHHHHHhccchhHHHHHH
Q 007573          286 EEALRLFSGMIKMDMQPDDATLVSVFTACSALQLLNEGRQS  326 (597)
Q Consensus       286 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~  326 (597)
                      ++..+.++..-.+   .+.   .-++++|.+...|.++.-+
T Consensus       279 eKlmEHlklf~sr---iNi---pKviracE~ahLW~ElvfL  313 (624)
T 3lvg_A          279 QKMREHLELFWSR---VNI---PKVLRAAEQAHLWAELVFL  313 (624)
T ss_dssp             THHHHHHTTSSSS---SCC---TTTHHHHTTTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHh---ccH---HHHHHHHHHHhhHHHHHHH
Confidence            5555554432221   111   1245566555555544433

>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A

Probab=97.62  E-value=2.1e-05  Score=75.46  Aligned_cols=231  Identities=11%  Similarity=0.092  Sum_probs=166.9

Q ss_pred             CCCcchHHHHHHHHHhcCChHHHHHHHhhcCC--CCcchHHHHHHHHHhCCChhHHHHHHhhCCCCCcchHHHHHHHHHc
Q 007573           47 TQYVFVNNAKISALSRAGKISAARQLFDQMTT--KDVITWNAIITGYWQNGFLQESKNLFQSMPVKNIVSWNCMIAGCID  124 (597)
Q Consensus        47 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~  124 (597)
                      ..|+..|..++.+..+.|.+++-.+.+....+  +++..=+.|+-+|++.++..+-.++   +..+|..-...+.+-|..
T Consensus        80 A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~IDteLi~ayAk~~rL~elEef---l~~~N~A~iq~VGDrcf~  156 (624)
T 3lvg_A           80 ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEF---INGPNNAHIQQVGDRCYD  156 (624)
T ss_dssp             CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTTTTHHHHHHHHTSCSSSTTTST---TSCCSSSCTHHHHHHHHH
T ss_pred             CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccHHHHHHHHHhhCcHHHHHHH---HcCCCcccHHHHHHHHHH
Confidence            68889999999999999999999999987766  6777788999999999987653322   224688888999999999


Q ss_pred             CCChHHHHHHHccCCCCChhhHHHHHHHHHcCCChHHHHHHHccCCCCCchhHHHHHHHHHhCCChhHHHHHHH-hcccC
Q 007573          125 NDRIDDAFDYFQAMPERNTATYNAMISGFLKHGRLEEATRLFEQMPRRNVISYTAMLDGFMKKGEVDKARALSD-YMSFK  203 (597)
Q Consensus       125 ~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~-~m~~~  203 (597)
                      .|.++.|.-+|..+.     -|..|...+.+.|++..|.+.-++.  .++.||-.+-.+|...+.+.-|.-.-- -.+.+
T Consensus       157 e~lYeAAKilys~is-----N~akLAstLV~L~~yq~AVdaArKA--ns~ktWKeV~~ACvd~~EfrLAqicGLniIvha  229 (624)
T 3lvg_A          157 EKMYDAAKLLYNNVS-----NFGRLASTLVHLGEYQAAVDGARKA--NSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHA  229 (624)
T ss_dssp             SCCSTTSSTTGGGSC-----CCTTTSSSSSSCSGGGSSTTTTTTC--CSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCCS
T ss_pred             ccCHHHHHHHHHhCc-----cHHHHHHHHHHHHHHHHHHHHHHhc--CChhHHHHHHHHHhCchHHHHHHHhcchhcccH
Confidence            999999988887663     3444666677888887777654433  577889988889999888877644322 22333


Q ss_pred             CcchHHHHHHHHHcCCChHHHHHHHhhcCCCC-CCchHHHHHHHHHHhcCCHHHHHHHHhhcCC----C-------ChhH
Q 007573          204 NVVSWTVMITGYVKNERFCEARELFYRMPDYD-KNVFVVTAMITGFCKVGMLENARLLFERIQP----K-------DCVS  271 (597)
Q Consensus       204 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~-------~~~~  271 (597)
                      |.  ...++..|-..|.+++-+.+++....++ ....+++-|.-.|++- +.++..+.++..-.    |       ....
T Consensus       230 de--L~elv~~YE~~G~f~ELIsLlEaglglErAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahL  306 (624)
T 3lvg_A          230 DE--LEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHL  306 (624)
T ss_dssp             SC--CSGGGSSSSTTCCCTTSTTTHHHHTTSTTCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTC
T ss_pred             HH--HHHHHHHHHhCCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhh
Confidence            22  2234556778888888888888877644 3556777788778775 44555554443322    1       4457


Q ss_pred             HHHHHHHHHHcCChhHHHH
Q 007573          272 FNAMIAGYAQNGVAEEALR  290 (597)
Q Consensus       272 ~~~li~~~~~~g~~~~A~~  290 (597)
                      |..++-.|.+-.+++.|..
T Consensus       307 W~ElvfLY~~ydE~DnA~l  325 (624)
T 3lvg_A          307 WAELVFLYDKYEEYDNAII  325 (624)
T ss_dssp             HHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHHhcchhHHHHHH
Confidence            8888888888888887653

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=97.61  E-value=7.5e-05  Score=61.36  Aligned_cols=87  Identities=13%  Similarity=0.016  Sum_probs=54.2

Q ss_pred             cHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCC----------HHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhc-
Q 007573          420 KVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQ----------LEKAWQITQGMP-FEA-DTGVWGSLLAACVIN-  486 (597)
Q Consensus       420 ~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~-  486 (597)
                      .+++|.+.++...+.  -+.+...|..+..++...|+          +++|+..|++.. +.| +..+|..++.+|... 
T Consensus        17 ~feeA~~~~~~Ai~l--~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg   94 (158)
T 1zu2_A           17 LFEQIRQDAENTYKS--NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFA   94 (158)
T ss_dssp             HHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhc
Confidence            445555555554432  11234455555555554443          346666666654 444 355677777777665 


Q ss_pred             ----------CCHHHHHHHHHHHHhcCCCCCc
Q 007573          487 ----------LNVELGELAAKKMRELDPQNSA  508 (597)
Q Consensus       487 ----------g~~~~a~~~~~~~~~~~p~~~~  508 (597)
                                |++++|+..|+++++++|++..
T Consensus        95 ~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~  126 (158)
T 1zu2_A           95 FLTPDETEAKHNFDLATQFFQQAVDEQPDNTH  126 (158)
T ss_dssp             HHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred             ccCcchhhhhccHHHHHHHHHHHHHhCCCCHH
Confidence                      5899999999999999999754

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=97.60  E-value=0.0013  Score=53.48  Aligned_cols=112  Identities=14%  Similarity=-0.012  Sum_probs=94.4

Q ss_pred             CCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhh----cCCHHH
Q 007573          384 GHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSR----AGQLEK  459 (597)
Q Consensus       384 g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~  459 (597)
                      +++++|+++|++..+.| .|+..    +...+...+.+++|.+.|++..+.    -++..+..|..+|..    .++.++
T Consensus         9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~~   79 (138)
T 1klx_A            9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDLRK   79 (138)
T ss_dssp             HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred             cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCccHHH
Confidence            46889999999999887 55544    667777888899999999998774    367788888888988    889999


Q ss_pred             HHHHHhhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCC
Q 007573          460 AWQITQGMPFEADTGVWGSLLAACVI----NLNVELGELAAKKMRELDP  504 (597)
Q Consensus       460 A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p  504 (597)
                      |.+.|++.....++..+..|...|..    .++.++|+..++++.+.+.
T Consensus        80 A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~  128 (138)
T 1klx_A           80 AAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS  128 (138)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence            99999987645678888889999988    8999999999999998764

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=97.60  E-value=0.00022  Score=52.92  Aligned_cols=65  Identities=22%  Similarity=0.206  Sum_probs=60.2

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHhCC
Q 007573          473 TGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRVRLLMKEQG  537 (597)
Q Consensus       473 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  537 (597)
                      ...+..+...+...|++++|+..++++++.+|+++.++..++.++...|++++|.+.+++..+..
T Consensus         9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~   73 (91)
T 1na3_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD   73 (91)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence            45788888899999999999999999999999999999999999999999999999999988743

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=97.59  E-value=0.00027  Score=55.39  Aligned_cols=81  Identities=11%  Similarity=-0.047  Sum_probs=57.7

Q ss_pred             HHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 007573          424 SMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMP-FEA-DTGVWGSLLAACVINLNVELGELAAKKMRE  501 (597)
Q Consensus       424 a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  501 (597)
                      |.+.|+...+.  -+.+...+..+...|...|++++|.+.+++.. ..| +...|..+..++...|++++|+..++++++
T Consensus         4 a~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~   81 (115)
T 2kat_A            4 ITERLEAMLAQ--GTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA   81 (115)
T ss_dssp             HHHHHHHHHTT--TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            45555655532  12346677777777888888888888777654 333 466788888888888999999999998888


Q ss_pred             cCCCC
Q 007573          502 LDPQN  506 (597)
Q Consensus       502 ~~p~~  506 (597)
                      +.|.+
T Consensus        82 ~~~~~   86 (115)
T 2kat_A           82 AAQSR   86 (115)
T ss_dssp             HHHHH
T ss_pred             hcccc
Confidence            87754

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=97.49  E-value=0.00042  Score=52.47  Aligned_cols=64  Identities=17%  Similarity=0.105  Sum_probs=38.2

Q ss_pred             HHHHHhhcCCHHHHHHHHhhCC-CCC-CHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchH
Q 007573          447 LVDILSRAGQLEKAWQITQGMP-FEA-DTG-VWGSLLAACVINLNVELGELAAKKMRELDPQNSAVY  510 (597)
Q Consensus       447 l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~  510 (597)
                      .+..+.+.|++++|.+.+++.. ..| +.. .+..+..++...|++++|+..++++++++|+++.++
T Consensus         6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~   72 (99)
T 2kc7_A            6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ   72 (99)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence            3445556666666666666544 223 344 566666666666666666666666666666665544

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=97.48  E-value=0.0032  Score=59.48  Aligned_cols=139  Identities=11%  Similarity=-0.031  Sum_probs=74.1

Q ss_pred             CCChhhHHHHHHHHH--HcC---CHHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHhc----c----CcHHHHHHHHHHhH
Q 007573          367 SPNLVSWNTIIAAFA--QHG---HYEKALIFFSQMGLNGFDPD-GITFLSLLSACGH----A----GKVNESMDLFELMV  432 (597)
Q Consensus       367 ~~~~~~~~~li~~~~--~~g---~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~----~----g~~~~a~~~~~~~~  432 (597)
                      +.+...|...+.+..  ..+   ...+|+.+|++..+.  .|+ ...+..+..++..    .    .........++...
T Consensus       191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~  268 (372)
T 3ly7_A          191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIV  268 (372)
T ss_dssp             CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHH
Confidence            456677777766543  233   347888999988875  666 3344433333320    0    01111111111111


Q ss_pred             HhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 007573          433 KVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMP-FEADTGVWGSLLAACVINLNVELGELAAKKMRELDPQNS  507 (597)
Q Consensus       433 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~  507 (597)
                      .....+.++..|..+...+...|++++|...++++. ..|+...|..+...+...|++++|.+.+++++.++|.++
T Consensus       269 a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~  344 (372)
T 3ly7_A          269 TLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN  344 (372)
T ss_dssp             TCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH
T ss_pred             hcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC
Confidence            111123345566666555555666666666666654 445655555556666666666666666666666666543

>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*

Probab=97.32  E-value=0.2  Score=51.59  Aligned_cols=114  Identities=8%  Similarity=-0.083  Sum_probs=61.2

Q ss_pred             CCHHHHHHHHHHHHHCCCCCChHH----HHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHH
Q 007573          384 GHYEKALIFFSQMGLNGFDPDGIT----FLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEK  459 (597)
Q Consensus       384 g~~~~A~~~~~~m~~~g~~p~~~~----~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~  459 (597)
                      .+.+.|...+......+ ..+...    ...+.......+...++...+......   .++.....-.+....+.|+++.
T Consensus       228 ~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~e~~~r~Alr~~d~~~  303 (618)
T 1qsa_A          228 QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---SQSTSLIERRVRMALGTGDRRG  303 (618)
T ss_dssp             HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---CCCHHHHHHHHHHHHHHTCHHH
T ss_pred             cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc---CCChHHHHHHHHHHHHCCCHHH
Confidence            36777888887775433 223222    222223334444244455555544322   2333333334444456788888


Q ss_pred             HHHHHhhCCCCC-C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 007573          460 AWQITQGMPFEA-D-TGVWGSLLAACVINLNVELGELAAKKMRE  501 (597)
Q Consensus       460 A~~~~~~~~~~p-~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  501 (597)
                      |...|+.|...+ + ..-.-=+..+....|+.++|..+|+++.+
T Consensus       304 a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~  347 (618)
T 1qsa_A          304 LNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ  347 (618)
T ss_dssp             HHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence            888888876322 2 22222344556677888888888887764

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=97.26  E-value=0.0016  Score=49.17  Aligned_cols=85  Identities=12%  Similarity=0.056  Sum_probs=42.9

Q ss_pred             HHHHhccCcHHHHHHHHHHhHHhcCCCCChH-HHHHHHHHHhhcCCHHHHHHHHhhCC-CCCC-HHHHHHHHHHHHhcCC
Q 007573          412 LSACGHAGKVNESMDLFELMVKVYGIIPSSE-HYTCLVDILSRAGQLEKAWQITQGMP-FEAD-TGVWGSLLAACVINLN  488 (597)
Q Consensus       412 l~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~g~  488 (597)
                      ...+...|++++|.+.++.+.+.  .+.+.. .+..+..+|...|++++|.+.|++.. ..|+ ...+..        +.
T Consensus         7 a~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~~   76 (99)
T 2kc7_A            7 IKELINQGDIENALQALEEFLQT--EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------KM   76 (99)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHH--CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------HH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------HH
Confidence            34455556666666666665543  112344 55556666666666666666665543 2332 222211        34


Q ss_pred             HHHHHHHHHHHHhcCCCC
Q 007573          489 VELGELAAKKMRELDPQN  506 (597)
Q Consensus       489 ~~~a~~~~~~~~~~~p~~  506 (597)
                      +.++...++++...+|++
T Consensus        77 ~~~a~~~~~~~~~~~p~~   94 (99)
T 2kc7_A           77 VMDILNFYNKDMYNQLEH   94 (99)
T ss_dssp             HHHHHHHHCCTTHHHHCC
T ss_pred             HHHHHHHHHHHhccCccc
Confidence            445555555555555444

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=97.26  E-value=0.0013  Score=53.39  Aligned_cols=87  Identities=13%  Similarity=-0.008  Sum_probs=44.1

Q ss_pred             cHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcC---CHHHHHHHHhhCC-CC-C--CHHHHHHHHHHHHhcCCHHHH
Q 007573          420 KVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAG---QLEKAWQITQGMP-FE-A--DTGVWGSLLAACVINLNVELG  492 (597)
Q Consensus       420 ~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~-~~-p--~~~~~~~l~~~~~~~g~~~~a  492 (597)
                      .+..+.+-|.+..+. + .++..+.-.+..++++.+   +.+++..++++.. .. |  ....+-.|.-+|.+.|++++|
T Consensus        13 ~l~~~~~~y~~e~~~-~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A   90 (152)
T 1pc2_A           13 DLLKFEKKFQSEKAA-G-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKA   90 (152)
T ss_dssp             HHHHHHHHHHHHHHT-T-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred             HHHHHHHHHHHHHcc-C-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHH
Confidence            344455555544432 2 245555555555565555   3445555555443 12 3  133444455555566666666


Q ss_pred             HHHHHHHHhcCCCCCc
Q 007573          493 ELAAKKMRELDPQNSA  508 (597)
Q Consensus       493 ~~~~~~~~~~~p~~~~  508 (597)
                      .+.++.+++.+|++..
T Consensus        91 ~~y~~~lL~ieP~n~Q  106 (152)
T 1pc2_A           91 LKYVRGLLQTEPQNNQ  106 (152)
T ss_dssp             HHHHHHHHHHCTTCHH
T ss_pred             HHHHHHHHhcCCCCHH
Confidence            6666666666665443

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=97.24  E-value=0.0014  Score=49.70  Aligned_cols=64  Identities=11%  Similarity=0.179  Sum_probs=40.6

Q ss_pred             ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHH
Q 007573          369 NLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMVK  433 (597)
Q Consensus       369 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~  433 (597)
                      +...|..+...|...|++++|+..|++..+.. +.+...|..+..++...|++++|.+.|++..+
T Consensus         6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~   69 (100)
T 3ma5_A            6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE   69 (100)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            44556666666666777777777777666542 22345566666666677777777776666654

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=97.24  E-value=0.012  Score=63.86  Aligned_cols=152  Identities=18%  Similarity=0.094  Sum_probs=84.6

Q ss_pred             HHHHhCCChhHHHH-HHHhcccCCcchHHHHHHHHHcCCChHHHHHHHhhcCCCCCCchHHHHHHHHHHhcCCHHHHHHH
Q 007573          182 DGFMKKGEVDKARA-LSDYMSFKNVVSWTVMITGYVKNERFCEARELFYRMPDYDKNVFVVTAMITGFCKVGMLENARLL  260 (597)
Q Consensus       182 ~~~~~~g~~~~A~~-~~~~m~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~  260 (597)
                      ......+++++|.+ ++..+.  +......++..+.+.|..++|.++.+.     +     ..-.......|++++|.++
T Consensus       607 ~~~~~~~~~~~a~~~~l~~i~--~~~~~~~~~~~l~~~~~~~~a~~~~~~-----~-----~~~f~~~l~~~~~~~A~~~  674 (814)
T 3mkq_A          607 QTLTLRGEIEEAIENVLPNVE--GKDSLTKIARFLEGQEYYEEALNISPD-----Q-----DQKFELALKVGQLTLARDL  674 (814)
T ss_dssp             HHHHHTTCHHHHHHHTGGGCC--CHHHHHHHHHHHHHTTCHHHHHHHCCC-----H-----HHHHHHHHHHTCHHHHHHH
T ss_pred             hHHHHhCCHHHHHHHHHhcCC--chHHHHHHHHHHHhCCChHHheecCCC-----c-----chheehhhhcCCHHHHHHH
Confidence            33345666666665 432221  022225556666667777776655432     1     1123445667888888887


Q ss_pred             HhhcCCCChhHHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhccchhHHHHHHHHHHHHhCCCCccc
Q 007573          261 FERIQPKDCVSFNAMIAGYAQNGVAEEALRLFSGMIKMDMQPDDATLVSVFTACSALQLLNEGRQSHVLVIRNGFEANVS  340 (597)
Q Consensus       261 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  340 (597)
                      .+.+  .+...|..+...+.+.++++.|.+.|.++..         |..+...+...++.+....+.+.....|      
T Consensus       675 ~~~~--~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~------  737 (814)
T 3mkq_A          675 LTDE--SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTG------  737 (814)
T ss_dssp             HTTC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTT------
T ss_pred             HHhh--CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcC------
Confidence            7665  3456788888888888888888888877643         2233333333555555444444444433      


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHH
Q 007573          341 VCNAVITMYSRCGGILDSELAF  362 (597)
Q Consensus       341 ~~~~l~~~~~~~g~~~~A~~~~  362 (597)
                      -++....+|.+.|++++|++++
T Consensus       738 ~~~~A~~~~~~~g~~~~a~~~~  759 (814)
T 3mkq_A          738 KFNLAFNAYWIAGDIQGAKDLL  759 (814)
T ss_dssp             CHHHHHHHHHHHTCHHHHHHHH
T ss_pred             chHHHHHHHHHcCCHHHHHHHH
Confidence            1233344455566666665554

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=97.22  E-value=0.0015  Score=64.34  Aligned_cols=93  Identities=15%  Similarity=0.070  Sum_probs=63.7

Q ss_pred             cCcHHHHHHHHHHhHHhcC--CCC---C-hHHHHHHHHHHhhcCCHHHHHHHHhhCC---------CCCCH-HHHHHHHH
Q 007573          418 AGKVNESMDLFELMVKVYG--IIP---S-SEHYTCLVDILSRAGQLEKAWQITQGMP---------FEADT-GVWGSLLA  481 (597)
Q Consensus       418 ~g~~~~a~~~~~~~~~~~~--~~p---~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~---------~~p~~-~~~~~l~~  481 (597)
                      .|++++|..++++..+...  +.|   + ..+++.|+.+|...|++++|+.++++..         ..|+. .+++.|..
T Consensus       311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~  390 (433)
T 3qww_A          311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR  390 (433)
T ss_dssp             TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence            3566666666665544311  112   2 3567777777777888888777776643         33443 36889999


Q ss_pred             HHHhcCCHHHHHHHHHHHHh-----cCCCCCchH
Q 007573          482 ACVINLNVELGELAAKKMRE-----LDPQNSAVY  510 (597)
Q Consensus       482 ~~~~~g~~~~a~~~~~~~~~-----~~p~~~~~~  510 (597)
                      .|..+|++++|+.+++++++     ++|++|.+-
T Consensus       391 ~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~  424 (433)
T 3qww_A          391 LYMGLENKAAGEKALKKAIAIMEVAHGKDHPYIS  424 (433)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHH
T ss_pred             HHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHH
Confidence            99999999999999999986     478776543

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=97.13  E-value=0.003  Score=62.37  Aligned_cols=97  Identities=8%  Similarity=-0.077  Sum_probs=64.1

Q ss_pred             HhccCcHHHHHHHHHHhHHhc--CCCCC----hHHHHHHHHHHhhcCCHHHHHHHHhhCC---------CCCCH-HHHHH
Q 007573          415 CGHAGKVNESMDLFELMVKVY--GIIPS----SEHYTCLVDILSRAGQLEKAWQITQGMP---------FEADT-GVWGS  478 (597)
Q Consensus       415 ~~~~g~~~~a~~~~~~~~~~~--~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~---------~~p~~-~~~~~  478 (597)
                      +.+.|++++|...+++.....  -+.|+    ..+++.|+.+|...|++++|+.++++..         ..|+. .+++.
T Consensus       297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~n  376 (429)
T 3qwp_A          297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMK  376 (429)
T ss_dssp             HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred             HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHH
Confidence            344556666666666554321  11122    3456667777777777777777776543         23443 36888


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHh-----cCCCCCchHH
Q 007573          479 LLAACVINLNVELGELAAKKMRE-----LDPQNSAVYV  511 (597)
Q Consensus       479 l~~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~~~~  511 (597)
                      |...|..+|++++|+.+++++++     ++|++|.+-.
T Consensus       377 La~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~  414 (429)
T 3qwp_A          377 VGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIED  414 (429)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHH
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHH
Confidence            89999999999999999999986     4788766543

>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1

Probab=97.05  E-value=0.066  Score=41.66  Aligned_cols=141  Identities=11%  Similarity=0.086  Sum_probs=101.4

Q ss_pred             HHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHH
Q 007573          380 FAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEK  459 (597)
Q Consensus       380 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~  459 (597)
                      +.-.|..++..++..+...   ..+..-|+.++--....-+-+-..++++.+-+.+.              ...+|++..
T Consensus        17 ~ildG~v~qGveii~k~~~---ssni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFD--------------is~C~NlKr   79 (172)
T 1wy6_A           17 FLLDGYIDEGVKIVLEITK---SSTKSEYNWFICNLLESIDCRYMFQVLDKIGSYFD--------------LDKCQNLKS   79 (172)
T ss_dssp             HHHTTCHHHHHHHHHHHHH---HSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSC--------------GGGCSCTHH
T ss_pred             HHHhhhHHHHHHHHHHHcC---CCCccccceeeeecchhhchhHHHHHHHHHhhhcC--------------cHhhhcHHH
Confidence            3446888888888888775   23455566666655555566666666666644322              234555555


Q ss_pred             HHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHhCCCc
Q 007573          460 AWQITQGMPFEADTGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRVRLLMKEQGVT  539 (597)
Q Consensus       460 A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  539 (597)
                      ....+-.+.  .+......-+.....+|.-++-.+++..++..++.+|..+..++.+|.+.|+..+|.+++++.-++|++
T Consensus        80 Vi~C~~~~n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k  157 (172)
T 1wy6_A           80 VVECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK  157 (172)
T ss_dssp             HHHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHhc--chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence            555555543  355566777788889999999999999987777777899999999999999999999999999999974

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=97.01  E-value=0.0091  Score=56.45  Aligned_cols=133  Identities=14%  Similarity=0.126  Sum_probs=93.0

Q ss_pred             CCChHHHHHHHHHHh--cc---CcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhh---cC-----C---HHHHHHHH
Q 007573          402 DPDGITFLSLLSACG--HA---GKVNESMDLFELMVKVYGIIPS-SEHYTCLVDILSR---AG-----Q---LEKAWQIT  464 (597)
Q Consensus       402 ~p~~~~~~~ll~~~~--~~---g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~---~g-----~---~~~A~~~~  464 (597)
                      +.+...|...+.+..  ..   ....+|..+|+++.+.   .|+ ...|..+..+|.-   .+     .   ...|.+..
T Consensus       191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l---DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~  267 (372)
T 3ly7_A          191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS---SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNI  267 (372)
T ss_dssp             CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHH
Confidence            555666766665543  22   3468899999998864   566 4555544444421   11     1   11222222


Q ss_pred             hhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHhCCC
Q 007573          465 QGMP-FEADTGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRVRLLMKEQGV  538 (597)
Q Consensus       465 ~~~~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  538 (597)
                      ..+. .+.++.++..+...+...|++++|+..++++++++|. ...|..+++++.-.|++++|.+.+++....++
T Consensus       268 ~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P  341 (372)
T 3ly7_A          268 VTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRP  341 (372)
T ss_dssp             HTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred             HhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence            2333 3456778888888787889999999999999999964 56678999999999999999999999887654

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=96.83  E-value=0.0041  Score=56.25  Aligned_cols=87  Identities=7%  Similarity=-0.029  Sum_probs=69.0

Q ss_pred             HHHHHHHHhhCC-CCCC---HHHHHHHHHHHHh-----cCCHHHHHHHHHHHHhcCCCC-CchHHHHHHHHHhc-CCcHH
Q 007573          457 LEKAWQITQGMP-FEAD---TGVWGSLLAACVI-----NLNVELGELAAKKMRELDPQN-SAVYVMLSNLYAAA-GMWRD  525 (597)
Q Consensus       457 ~~~A~~~~~~~~-~~p~---~~~~~~l~~~~~~-----~g~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~-g~~~~  525 (597)
                      ..+|...+++.. +.|+   ...|..|+..|..     -|+.++|.+.|+++++++|+. ..++...++.++.. |+.++
T Consensus       179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~  258 (301)
T 3u64_A          179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG  258 (301)
T ss_dssp             HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred             HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence            345566665544 5676   4578888888887     499999999999999999975 99999999999884 99999


Q ss_pred             HHHHHHHHHhCCCccCCC
Q 007573          526 VTRVRLLMKEQGVTKQCA  543 (597)
Q Consensus       526 A~~~~~~~~~~~~~~~~~  543 (597)
                      |.+.+++......+..|+
T Consensus       259 a~~~L~kAL~a~p~~~P~  276 (301)
T 3u64_A          259 FDEALDRALAIDPESVPH  276 (301)
T ss_dssp             HHHHHHHHHHCCGGGCSS
T ss_pred             HHHHHHHHHcCCCCCCCC
Confidence            999999998877654444

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=96.61  E-value=0.01  Score=45.25  Aligned_cols=73  Identities=18%  Similarity=0.062  Sum_probs=51.8

Q ss_pred             HHHHHHHHHHhhcCCHHHHHHHHhhCC---------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHH
Q 007573          442 EHYTCLVDILSRAGQLEKAWQITQGMP---------FEADTGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVM  512 (597)
Q Consensus       442 ~~~~~l~~~~~~~g~~~~A~~~~~~~~---------~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~  512 (597)
                      .-+-.|+..+.+.|+++.|...+++..         ..+...++..|..++.+.|+++.|...++++++++|+++.+...
T Consensus         6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n   85 (104)
T 2v5f_A            6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGN   85 (104)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhh
Confidence            334455555666666666665555432         12345678889999999999999999999999999998776555


Q ss_pred             HH
Q 007573          513 LS  514 (597)
Q Consensus       513 l~  514 (597)
                      +.
T Consensus        86 ~~   87 (104)
T 2v5f_A           86 LK   87 (104)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=96.60  E-value=0.034  Score=60.31  Aligned_cols=96  Identities=14%  Similarity=0.103  Sum_probs=49.2

Q ss_pred             hCCChhHHHH-HHhhCCCCCcchHHHHHHHHHcCCChHHHHHHHccCCCCChhhHHHHHHHHHcCCChHHHHHHHccCCC
Q 007573           93 QNGFLQESKN-LFQSMPVKNIVSWNCMIAGCIDNDRIDDAFDYFQAMPERNTATYNAMISGFLKHGRLEEATRLFEQMPR  171 (597)
Q Consensus        93 ~~g~~~~A~~-~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  171 (597)
                      ..+++++|.+ ++..+.  +......++..+.+.|..++|.++.+.     +   ..-.......|+++.|.++.+.+  
T Consensus       611 ~~~~~~~a~~~~l~~i~--~~~~~~~~~~~l~~~~~~~~a~~~~~~-----~---~~~f~~~l~~~~~~~A~~~~~~~--  678 (814)
T 3mkq_A          611 LRGEIEEAIENVLPNVE--GKDSLTKIARFLEGQEYYEEALNISPD-----Q---DQKFELALKVGQLTLARDLLTDE--  678 (814)
T ss_dssp             HTTCHHHHHHHTGGGCC--CHHHHHHHHHHHHHTTCHHHHHHHCCC-----H---HHHHHHHHHHTCHHHHHHHHTTC--
T ss_pred             HhCCHHHHHHHHHhcCC--chHHHHHHHHHHHhCCChHHheecCCC-----c---chheehhhhcCCHHHHHHHHHhh--
Confidence            4555555555 332222  011224455555555555555554421     1   11123344556666666666555  


Q ss_pred             CCchhHHHHHHHHHhCCChhHHHHHHHhc
Q 007573          172 RNVISYTAMLDGFMKKGEVDKARALSDYM  200 (597)
Q Consensus       172 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m  200 (597)
                      .+...|..+...+.+.|+++.|.+.|..+
T Consensus       679 ~~~~~W~~la~~al~~~~~~~A~~~y~~~  707 (814)
T 3mkq_A          679 SAEMKWRALGDASLQRFNFKLAIEAFTNA  707 (814)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence            23456666666666666666666665544

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=96.54  E-value=0.019  Score=42.57  Aligned_cols=70  Identities=6%  Similarity=-0.001  Sum_probs=54.2

Q ss_pred             CCChHHHHHHHHHHhhcCC---HHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 007573          438 IPSSEHYTCLVDILSRAGQ---LEKAWQITQGMP-FEA-DTGVWGSLLAACVINLNVELGELAAKKMRELDPQNS  507 (597)
Q Consensus       438 ~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~  507 (597)
                      +.++..+..+..++...++   .++|..++++.. ..| +...+..++..+...|++++|+..++++++.+|+++
T Consensus         3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~   77 (93)
T 3bee_A            3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNL   77 (93)
T ss_dssp             CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTC
T ss_pred             CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence            3456777777777765444   688888888765 455 566788888889999999999999999999999843

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=96.45  E-value=0.026  Score=42.87  Aligned_cols=66  Identities=12%  Similarity=-0.092  Sum_probs=55.9

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-------CCCCchHHHHHHHHHhcCCcHHHHHHHHHHHhCC
Q 007573          472 DTGVWGSLLAACVINLNVELGELAAKKMRELD-------PQNSAVYVMLSNLYAAAGMWRDVTRVRLLMKEQG  537 (597)
Q Consensus       472 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  537 (597)
                      +..-...++..+...|+++.|+..++++++..       +..+.++..++.+|.+.|++++|...++++.+..
T Consensus         4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~   76 (104)
T 2v5f_A            4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD   76 (104)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence            45556788899999999999999999999753       2336778999999999999999999999987643

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=96.44  E-value=0.14  Score=44.27  Aligned_cols=152  Identities=13%  Similarity=0.069  Sum_probs=90.7

Q ss_pred             hhhHHHhhcCCCcchHHHHHHHHHhcCChHHHHHHHhhcCCCCcchHHHHHHHHHhCCChhHHHHHHhhCCCCCcchHHH
Q 007573           38 SNCLIRLFSTQYVFVNNAKISALSRAGKISAARQLFDQMTTKDVITWNAIITGYWQNGFLQESKNLFQSMPVKNIVSWNC  117 (597)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~  117 (597)
                      ....+..+..+|..+-...+..+++.|..+....+.+.+..++...-...+.++...|..+..-.+.+.+..++...-..
T Consensus        16 ~~~~i~~L~~~~~~vr~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~~~~~~L~~~l~d~~~~vr~~   95 (201)
T 3ltj_A           16 VEMYIKNLQDDSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQS   95 (201)
T ss_dssp             HHHHHHHTTCSCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHH
T ss_pred             hHHHHHHhcCCCHHHHHHHHHHHHhcCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHHHHH
Confidence            33455555567777777788888888876666666666666776666666667776666554444445455556666666


Q ss_pred             HHHHHHcCCChHHHHHHHccCCCCChhhHHHHHHHHHcCCChHHHHHHHccCCCCCchhHHHHHHHHHhCCC
Q 007573          118 MIAGCIDNDRIDDAFDYFQAMPERNTATYNAMISGFLKHGRLEEATRLFEQMPRRNVISYTAMLDGFMKKGE  189 (597)
Q Consensus       118 ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~  189 (597)
                      .+.++.+.++.+....+.+.+..++..+-...+.++.+.|+.+....+.+-+..++..+-...+.++.+.|.
T Consensus        96 a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~  167 (201)
T 3ltj_A           96 AAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGG  167 (201)
T ss_dssp             HHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHTCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS
T ss_pred             HHHHHHHhCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc
Confidence            666666666554444444444456666666666666666654433333333444555555555555555554

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=96.39  E-value=0.021  Score=44.48  Aligned_cols=87  Identities=11%  Similarity=-0.043  Sum_probs=45.7

Q ss_pred             cHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHH---HHHHHhhCC-CC-C--CHHHHHHHHHHHHhcCCHHHH
Q 007573          420 KVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEK---AWQITQGMP-FE-A--DTGVWGSLLAACVINLNVELG  492 (597)
Q Consensus       420 ~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~-~~-p--~~~~~~~l~~~~~~~g~~~~a  492 (597)
                      .+..+.+-|...... +. |+..+--.+..++.+.....+   ++.+++.+. .. |  .....-.|.-++.+.|++++|
T Consensus        16 ~l~~~~~~y~~e~~~-~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A   93 (126)
T 1nzn_A           16 DLLKFEKKFQSEKAA-GS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKA   93 (126)
T ss_dssp             HHHHHHHHHHHHHHH-SC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHhcc-CC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHH
Confidence            344445555444332 22 555555556666666665544   555555544 11 2  122334444556666666666


Q ss_pred             HHHHHHHHhcCCCCCc
Q 007573          493 ELAAKKMRELDPQNSA  508 (597)
Q Consensus       493 ~~~~~~~~~~~p~~~~  508 (597)
                      .+.++.+++.+|++..
T Consensus        94 ~~~~~~lL~~eP~n~Q  109 (126)
T 1nzn_A           94 LKYVRGLLQTEPQNNQ  109 (126)
T ss_dssp             HHHHHHHHHHCTTCHH
T ss_pred             HHHHHHHHHhCCCCHH
Confidence            6666666666666544

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=96.39  E-value=0.014  Score=47.34  Aligned_cols=82  Identities=17%  Similarity=0.084  Sum_probs=39.3

Q ss_pred             HHHHHHHHHHHHCCCCCChHHHHHHHHHHhccC---cHHHHHHHHHHhHHhcCCCC--ChHHHHHHHHHHhhcCCHHHHH
Q 007573          387 EKALIFFSQMGLNGFDPDGITFLSLLSACGHAG---KVNESMDLFELMVKVYGIIP--SSEHYTCLVDILSRAGQLEKAW  461 (597)
Q Consensus       387 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~  461 (597)
                      ..+.+-|.+..+.| .++..+.-.+..++.+++   +.+++..+++...+. . .|  ..+.+-.|.-+|.+.|++++|.
T Consensus        15 ~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~-~-~p~~~rd~lY~LAv~~~kl~~Y~~A~   91 (152)
T 1pc2_A           15 LKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPK-G-SKEEQRDYVFYLAVGNYRLKEYEKAL   91 (152)
T ss_dssp             HHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH-S-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred             HHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-C-CccchHHHHHHHHHHHHHccCHHHHH
Confidence            34444444444433 244444444555555554   444555555555543 1 22  1333444445555555555555


Q ss_pred             HHHhhCC-CCC
Q 007573          462 QITQGMP-FEA  471 (597)
Q Consensus       462 ~~~~~~~-~~p  471 (597)
                      ++++.+. .+|
T Consensus        92 ~y~~~lL~ieP  102 (152)
T 1pc2_A           92 KYVRGLLQTEP  102 (152)
T ss_dssp             HHHHHHHHHCT
T ss_pred             HHHHHHHhcCC
Confidence            5555543 344

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=96.25  E-value=0.37  Score=40.09  Aligned_cols=105  Identities=10%  Similarity=0.011  Sum_probs=66.3

Q ss_pred             HHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhccchhHHHH
Q 007573          245 ITGFCKVGMLENARLLFERIQPKDCVSFNAMIAGYAQNGVAEEALRLFSGMIKMDMQPDDATLVSVFTACSALQLLNEGR  324 (597)
Q Consensus       245 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~  324 (597)
                      .....++|+++.|.++.+.+  .+...|..|......+|+++-|.+.|.+...         +..+.-.|...|+.+...
T Consensus        12 F~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~   80 (177)
T 3mkq_B           12 FDLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLS   80 (177)
T ss_dssp             HHHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHH
T ss_pred             HHHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHH
Confidence            34556778888888887766  4567888888888888888888888877653         223333444456665555


Q ss_pred             HHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHhccC
Q 007573          325 QSHVLVIRNGFEANVSVCNAVITMYSRCGGILDSELAFRQIH  366 (597)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  366 (597)
                      .+-+.....|      -++.....+.-.|+++++.++|.+..
T Consensus        81 kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~~  116 (177)
T 3mkq_B           81 KMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEGG  116 (177)
T ss_dssp             HHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred             HHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHCC
Confidence            5544444444      23344444555566666666665443

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=96.06  E-value=0.33  Score=42.28  Aligned_cols=153  Identities=12%  Similarity=0.069  Sum_probs=79.9

Q ss_pred             chhhHHHhhcCCCcchHHHHHHHHHhcCChHHHHHHHhhcCCCCcchHHHHHHHHHhCCChhHHHHHHhhCCCCCcchHH
Q 007573           37 SSNCLIRLFSTQYVFVNNAKISALSRAGKISAARQLFDQMTTKDVITWNAIITGYWQNGFLQESKNLFQSMPVKNIVSWN  116 (597)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~  116 (597)
                      ........+..+|..+-...+..+++.|..+....+.+.+..++...-...+.++...|..+..-.+.+.+..+|...-.
T Consensus        20 ~~~~L~~~L~~~~~~vR~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~~~~~vr~   99 (211)
T 3ltm_A           20 KVEMYIKNLQDDSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQ   99 (211)
T ss_dssp             GHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHhCCccHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHHHH
Confidence            33444444555666666666777777776555555555555566555555566666666544443344444445555555


Q ss_pred             HHHHHHHcCCChHHHHHHHccCCCCChhhHHHHHHHHHcCCChHHHHHHHccCCCCCchhHHHHHHHHHhCCC
Q 007573          117 CMIAGCIDNDRIDDAFDYFQAMPERNTATYNAMISGFLKHGRLEEATRLFEQMPRRNVISYTAMLDGFMKKGE  189 (597)
Q Consensus       117 ~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~  189 (597)
                      ..+.++.+.++.+....+.+.+..++..+-...+.++.+.|+.+....+.+-+..++..+-...+.++.+.+.
T Consensus       100 ~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~  172 (211)
T 3ltm_A          100 SAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGG  172 (211)
T ss_dssp             HHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS
T ss_pred             HHHHHHHHhCcHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc
Confidence            5555555555543333333333455555555555555555554333333333333444444444555544444

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=95.81  E-value=0.54  Score=40.86  Aligned_cols=121  Identities=7%  Similarity=-0.006  Sum_probs=52.8

Q ss_pred             HHHHhhcCCCCcchHHHHHHHHHhCCChhHHHHHHhhCCCCCcchHHHHHHHHHcCCChHHHHHHHccCCCCChhhHHHH
Q 007573           70 RQLFDQMTTKDVITWNAIITGYWQNGFLQESKNLFQSMPVKNIVSWNCMIAGCIDNDRIDDAFDYFQAMPERNTATYNAM  149 (597)
Q Consensus        70 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l  149 (597)
                      ..+.+.+..++...-...+..+.+.|..+..-.+.+.+..+|...-...+.++...++.+....+.+.+..+++.+-...
T Consensus        22 ~~L~~~L~~~~~~vR~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~~~~~vr~~a  101 (211)
T 3ltm_A           22 EMYIKNLQDDSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQSA  101 (211)
T ss_dssp             HHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHH
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHhCCccHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHHHHHH
Confidence            33333344445444444455555555433333333333344444444444555544443333333333334454444445


Q ss_pred             HHHHHcCCChHHHHHHHccCCCCCchhHHHHHHHHHhCCCh
Q 007573          150 ISGFLKHGRLEEATRLFEQMPRRNVISYTAMLDGFMKKGEV  190 (597)
Q Consensus       150 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~  190 (597)
                      +.++.+.|+.+....+.+-+..++..+-...+.++.+.|..
T Consensus       102 ~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~  142 (211)
T 3ltm_A          102 AVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDE  142 (211)
T ss_dssp             HHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG
T ss_pred             HHHHHHhCcHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCH
Confidence            55555544433333333333334444444444444444443

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=95.61  E-value=0.88  Score=39.08  Aligned_cols=116  Identities=7%  Similarity=-0.009  Sum_probs=52.8

Q ss_pred             hcCCCCcchHHHHHHHHHhCCChhHHHHHHhhCCCCCcchHHHHHHHHHcCCChHHHHHHHccCCCCChhhHHHHHHHHH
Q 007573           75 QMTTKDVITWNAIITGYWQNGFLQESKNLFQSMPVKNIVSWNCMIAGCIDNDRIDDAFDYFQAMPERNTATYNAMISGFL  154 (597)
Q Consensus        75 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~  154 (597)
                      .+..+|...-...+.++.+.|..+..-.+.+.+..++...-...+.++...++.+....+.+.+..+++.+-...+.++.
T Consensus        22 ~L~~~~~~vr~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~  101 (201)
T 3ltj_A           22 NLQDDSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQSAAVALG  101 (201)
T ss_dssp             HTTCSCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred             HhcCCCHHHHHHHHHHHHhcCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            33344444444445555555544333334444444454444444555554444433333333344455555555555555


Q ss_pred             cCCChHHHHHHHccCCCCCchhHHHHHHHHHhCCCh
Q 007573          155 KHGRLEEATRLFEQMPRRNVISYTAMLDGFMKKGEV  190 (597)
Q Consensus       155 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~  190 (597)
                      +.|+.+....+.+-+..++..+-...+.++.+.|+.
T Consensus       102 ~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~  137 (201)
T 3ltj_A          102 QIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDE  137 (201)
T ss_dssp             HHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHTCG
T ss_pred             HhCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCH
Confidence            555443333333333344444444444444444443

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=95.57  E-value=0.54  Score=37.22  Aligned_cols=70  Identities=9%  Similarity=-0.028  Sum_probs=31.7

Q ss_pred             CCChHHHHHHHHHHhhcCCHH---HHHHHHhhCC-CCC-C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 007573          438 IPSSEHYTCLVDILSRAGQLE---KAWQITQGMP-FEA-D-TGVWGSLLAACVINLNVELGELAAKKMRELDPQNS  507 (597)
Q Consensus       438 ~p~~~~~~~l~~~~~~~g~~~---~A~~~~~~~~-~~p-~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~  507 (597)
                      .|+..+--.+..++.+....+   ++..+++.+. ..| + ....--|.-++.+.|++++|.++.+.+++.+|+|.
T Consensus        36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~  111 (144)
T 1y8m_A           36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNK  111 (144)
T ss_dssp             TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCH
T ss_pred             CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcH
Confidence            344444444555555554333   3333443332 222 1 22333344445555555555555555555555543

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=95.30  E-value=0.17  Score=39.31  Aligned_cols=84  Identities=15%  Similarity=0.022  Sum_probs=42.5

Q ss_pred             HHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHH---HHHHHHHhHHhcCCCC--ChHHHHHHHHHHhhcCCHHHH
Q 007573          386 YEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNE---SMDLFELMVKVYGIIP--SSEHYTCLVDILSRAGQLEKA  460 (597)
Q Consensus       386 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~---a~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A  460 (597)
                      ...+.+-|.+....| .|+..+--.+..++.++.....   ++.+++.+.+.  -.|  .....-.|.-++.+.|++++|
T Consensus        17 l~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~--~~p~~~Rd~lY~LAvg~yklg~Y~~A   93 (126)
T 1nzn_A           17 LLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK--GSKEEQRDYVFYLAVGNYRLKEYEKA   93 (126)
T ss_dssp             HHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT--SCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHhhhHHHH
Confidence            344444444444433 2555554555555655554444   56666655442  112  233334455556666666666


Q ss_pred             HHHHhhCC-CCCC
Q 007573          461 WQITQGMP-FEAD  472 (597)
Q Consensus       461 ~~~~~~~~-~~p~  472 (597)
                      .+.++.+. .+|+
T Consensus        94 ~~~~~~lL~~eP~  106 (126)
T 1nzn_A           94 LKYVRGLLQTEPQ  106 (126)
T ss_dssp             HHHHHHHHHHCTT
T ss_pred             HHHHHHHHHhCCC
Confidence            66666554 4443

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=94.97  E-value=0.15  Score=39.88  Aligned_cols=65  Identities=11%  Similarity=-0.043  Sum_probs=40.3

Q ss_pred             CCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCCC-CchHHHHHHHHHhcCCcHHHHHHHHHHHh
Q 007573          471 ADTGVWGSLLAACVINLN---VELGELAAKKMRELDPQN-SAVYVMLSNLYAAAGMWRDVTRVRLLMKE  535 (597)
Q Consensus       471 p~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  535 (597)
                      |+..+--.+.+++.+..+   ..+++.+++.+.+.+|.. ...+..|+-++.+.|++++|.++.+.+.+
T Consensus        38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~  106 (134)
T 3o48_A           38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE  106 (134)
T ss_dssp             SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred             CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence            444444445555554443   345677777777666643 55566677777777777777777776664

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=94.83  E-value=0.064  Score=48.56  Aligned_cols=106  Identities=16%  Similarity=0.171  Sum_probs=70.8

Q ss_pred             HHHHHHHHHHhHHhcCCCCC---hHHHHHHHHHHhhc-----CCHHHHHHHHhhCC-CCCC--HHHHHHHHHHHHh-cCC
Q 007573          421 VNESMDLFELMVKVYGIIPS---SEHYTCLVDILSRA-----GQLEKAWQITQGMP-FEAD--TGVWGSLLAACVI-NLN  488 (597)
Q Consensus       421 ~~~a~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~-~~p~--~~~~~~l~~~~~~-~g~  488 (597)
                      ...|...+++..   .+.|+   ...|..|...|...     |+.++|.+.|++.. +.|+  ..++......++. .|+
T Consensus       179 l~~A~a~lerAl---eLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd  255 (301)
T 3u64_A          179 VHAAVMMLERAC---DLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNN  255 (301)
T ss_dssp             HHHHHHHHHHHH---HHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTC
T ss_pred             HHHHHHHHHHHH---HhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCC
Confidence            445555555555   34555   45677777778774     88888888888765 5663  6677777777766 489


Q ss_pred             HHHHHHHHHHHHhcCCCC-CchHHHHHHHHHhcCCcHHHHHHHHHHHh
Q 007573          489 VELGELAAKKMRELDPQN-SAVYVMLSNLYAAAGMWRDVTRVRLLMKE  535 (597)
Q Consensus       489 ~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  535 (597)
                      .+++.+.+++++..+|.. |.      +.+...+.-++|..+++++.+
T Consensus       256 ~~~a~~~L~kAL~a~p~~~P~------~~lan~~~q~eA~~LL~~~~d  297 (301)
T 3u64_A          256 RAGFDEALDRALAIDPESVPH------NKLLVILSQKRARWLKAHVQD  297 (301)
T ss_dssp             HHHHHHHHHHHHHCCGGGCSS------CHHHHHHHHHHHHHHHHTHHH
T ss_pred             HHHHHHHHHHHHcCCCCCCCC------hhHHHHHHHHHHHHHHHHhHH
Confidence            999999999999988873 32      122333445667776665543

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=94.80  E-value=0.96  Score=37.58  Aligned_cols=128  Identities=14%  Similarity=0.095  Sum_probs=74.1

Q ss_pred             HHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHH
Q 007573          379 AFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLE  458 (597)
Q Consensus       379 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~  458 (597)
                      .....|+++.|.++.+.+      .+...|..+.......|+++-|.+.|.....          +..+.-.|.-.|+.+
T Consensus        14 LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D----------~~~L~~Ly~~tg~~e   77 (177)
T 3mkq_B           14 LALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS----------FDKLSFLYLVTGDVN   77 (177)
T ss_dssp             HHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC----------HHHHHHHHHHHTCHH
T ss_pred             HHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC----------HHHHHHHHHHhCCHH
Confidence            345577888887776654      4566777777777778888888877776531          345555666677766


Q ss_pred             HHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcHHHHHHHHHH
Q 007573          459 KAWQITQGMPFEADTGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRVRLLM  533 (597)
Q Consensus       459 ~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  533 (597)
                      .-.++-+....+-+   ++.-...+...|+++++++++.+.-+        +....-.-...|-.+.|.++.+.+
T Consensus        78 ~L~kla~iA~~~g~---~n~af~~~l~lGdv~~~i~lL~~~~r--------~~eA~~~A~t~g~~~~a~~~~~~~  141 (177)
T 3mkq_B           78 KLSKMQNIAQTRED---FGSMLLNTFYNNSTKERSSIFAEGGS--------LPLAYAVAKANGDEAAASAFLEQA  141 (177)
T ss_dssp             HHHHHHHHHHHTTC---HHHHHHHHHHHTCHHHHHHHHHHTTC--------HHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHCcc---HHHHHHHHHHcCCHHHHHHHHHHCCC--------hHHHHHHHHHcCcHHHHHHHHHHh
Confidence            65555433221111   33334455667788888777755321        111111222245556666666554

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=94.77  E-value=0.13  Score=40.98  Aligned_cols=57  Identities=14%  Similarity=-0.086  Sum_probs=40.4

Q ss_pred             cCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchH
Q 007573          454 AGQLEKAWQITQGMP--FEADTGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVY  510 (597)
Q Consensus       454 ~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~  510 (597)
                      .++.++|.++|+.+.  -+.=..+|......-.++|++..|.+++.+++.+.|.+...+
T Consensus        73 i~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~l  131 (161)
T 4h7y_A           73 IQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEML  131 (161)
T ss_dssp             HHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHH
T ss_pred             hcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHH
Confidence            356667777776653  111256777777777788999999999999999888865543

>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1

Probab=94.72  E-value=1.2  Score=34.87  Aligned_cols=82  Identities=10%  Similarity=-0.010  Sum_probs=54.3

Q ss_pred             CCHHHHHHHHhccCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhH
Q 007573          353 GGILDSELAFRQIHSPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMV  432 (597)
Q Consensus       353 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~  432 (597)
                      |++......+-.+. .+.......+..+...|+-++-.+++..+.. ..+|++.....+..||.+.|+..++.+++.++.
T Consensus        75 ~NlKrVi~C~~~~n-~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC  152 (172)
T 1wy6_A           75 QNLKSVVECGVINN-TLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEAC  152 (172)
T ss_dssp             SCTHHHHHHHHHTT-CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             hcHHHHHHHHHHhc-chHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence            44444444433332 3344455566777788888888888887543 336777778888888888888888888888877


Q ss_pred             HhcCC
Q 007573          433 KVYGI  437 (597)
Q Consensus       433 ~~~~~  437 (597)
                      +. |+
T Consensus       153 ~k-G~  156 (172)
T 1wy6_A          153 KK-GE  156 (172)
T ss_dssp             HT-TC
T ss_pred             Hh-hh
Confidence            65 54

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=94.39  E-value=0.19  Score=40.18  Aligned_cols=54  Identities=9%  Similarity=-0.021  Sum_probs=45.3

Q ss_pred             hcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHhCCC
Q 007573          485 INLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRVRLLMKEQGV  538 (597)
Q Consensus       485 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  538 (597)
                      ..+|.++|.++|+.++++...-+.++...+..-.++|+.+.|.+++.+....+.
T Consensus        72 ei~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~  125 (161)
T 4h7y_A           72 AIQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGA  125 (161)
T ss_dssp             HHHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred             HhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCC
Confidence            447999999999999987444467777888888899999999999999988665

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=94.37  E-value=0.15  Score=53.39  Aligned_cols=55  Identities=11%  Similarity=-0.058  Sum_probs=50.7

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHH
Q 007573          480 LAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRVRLLMK  534 (597)
Q Consensus       480 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  534 (597)
                      ...|...|+++.|+.+.+++...-|.+..+|..|+.+|...|+|+.|+-.+..+.
T Consensus       344 a~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP  398 (754)
T 4gns_B          344 TNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP  398 (754)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred             HHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence            3457788999999999999999999999999999999999999999999998884

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16

Probab=92.49  E-value=6  Score=35.85  Aligned_cols=20  Identities=5%  Similarity=-0.142  Sum_probs=8.2

Q ss_pred             CCCchhHHHHHHHHHhCCCh
Q 007573          171 RRNVISYTAMLDGFMKKGEV  190 (597)
Q Consensus       171 ~~~~~~~~~li~~~~~~g~~  190 (597)
                      .++..+-...+.++.+.|+.
T Consensus       139 d~~~~vR~~a~~aL~~~~~~  158 (280)
T 1oyz_A          139 DKSTNVRRATAFAISVINDK  158 (280)
T ss_dssp             CSCHHHHHHHHHHHHTC---
T ss_pred             CCCHHHHHHHHHHHHhcCCH
Confidence            34444444445555555443

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=92.14  E-value=3.1  Score=39.91  Aligned_cols=88  Identities=11%  Similarity=-0.052  Sum_probs=53.9

Q ss_pred             HHHHHHhhcCCHHHHHHHHhhCC---CCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC----CCC---CchH
Q 007573          446 CLVDILSRAGQLEKAWQITQGMP---FEAD-----TGVWGSLLAACVINLNVELGELAAKKMRELD----PQN---SAVY  510 (597)
Q Consensus       446 ~l~~~~~~~g~~~~A~~~~~~~~---~~p~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----p~~---~~~~  510 (597)
                      .++..|...|++.+|.+++.++.   .+.|     ..++..-+..|...|++.++...+.++....    +++   ....
T Consensus       104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~  183 (394)
T 3txn_A          104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD  183 (394)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence            56777778888888877776654   1111     1234444556777888888888887776432    221   2223


Q ss_pred             HHHHHHHH-hcCCcHHHHHHHHHH
Q 007573          511 VMLSNLYA-AAGMWRDVTRVRLLM  533 (597)
Q Consensus       511 ~~l~~~~~-~~g~~~~A~~~~~~~  533 (597)
                      ..-|-.+. ..++|.+|...|-+.
T Consensus       184 ~~~Gi~~l~~~rdyk~A~~~F~ea  207 (394)
T 3txn_A          184 LQSGILHAADERDFKTAFSYFYEA  207 (394)
T ss_dssp             HHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred             HHhhHHHHHhccCHHHHHHHHHHH
Confidence            34455566 678888887776554

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=91.64  E-value=14  Score=39.65  Aligned_cols=157  Identities=13%  Similarity=0.036  Sum_probs=76.8

Q ss_pred             HHHHhcCCHHHHHHHHhhcCCC-Ch--hHHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCHHHHH---HHHHHHhccch
Q 007573          246 TGFCKVGMLENARLLFERIQPK-DC--VSFNAMIAGYAQNGVAEEALRLFSGMIKMDMQPDDATLV---SVFTACSALQL  319 (597)
Q Consensus       246 ~~~~~~g~~~~A~~~~~~~~~~-~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~---~ll~~~~~~~~  319 (597)
                      ..+.-.|+-+....++..+.+. +.  .-.-.+.-++...|+.+.+..+++.+.... .| ..-|.   .+.-+|+..|+
T Consensus       498 li~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~-dp-~vRygaa~alglAyaGTGn  575 (963)
T 4ady_A          498 LCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQELADDLITKMLASD-ES-LLRYGGAFTIALAYAGTGN  575 (963)
T ss_dssp             HHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCS-CH-HHHHHHHHHHHHHTTTSCC
T ss_pred             hhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCC-CH-HHHHHHHHHHHHHhcCCCC
Confidence            3344556655555555543321 11  122233334446677777777777666531 22 22222   23345667777


Q ss_pred             hHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHhccC-CCChhhHH--HHHHHHHHcCCH-HHHHHHHHH
Q 007573          320 LNEGRQSHVLVIRNGFEANVSVCNAVITMYSRCGGILDSELAFRQIH-SPNLVSWN--TIIAAFAQHGHY-EKALIFFSQ  395 (597)
Q Consensus       320 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~--~li~~~~~~g~~-~~A~~~~~~  395 (597)
                      .....+++..+.... ..++.-...+.-++...|+.+.+.++++.+. ..|..+-.  .+..+....|.. .++++++..
T Consensus       576 ~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~  654 (963)
T 4ady_A          576 NSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDP  654 (963)
T ss_dssp             HHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHH
T ss_pred             HHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHH
Confidence            777776777666532 2222222222223334566666666666554 23333322  233333334443 567777777


Q ss_pred             HHHCCCCCChHHH
Q 007573          396 MGLNGFDPDGITF  408 (597)
Q Consensus       396 m~~~g~~p~~~~~  408 (597)
                      +..   .+|..+-
T Consensus       655 L~~---D~d~~Vr  664 (963)
T 4ady_A          655 LTK---DPVDFVR  664 (963)
T ss_dssp             HHT---CSSHHHH
T ss_pred             Hcc---CCCHHHH
Confidence            764   4444433

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=91.57  E-value=17  Score=39.09  Aligned_cols=292  Identities=11%  Similarity=0.056  Sum_probs=145.0

Q ss_pred             HHHHHHHHhCCChhHH-HHHH-HhcccC-CcchH-HHHHHHHHcCCChHHHHHHHhhcCCCC--CC--chHHHHHHHHHH
Q 007573          178 TAMLDGFMKKGEVDKA-RALS-DYMSFK-NVVSW-TVMITGYVKNERFCEARELFYRMPDYD--KN--VFVVTAMITGFC  249 (597)
Q Consensus       178 ~~li~~~~~~g~~~~A-~~~~-~~m~~~-~~~~~-~~ll~~~~~~g~~~~a~~~~~~~~~~~--~~--~~~~~~l~~~~~  249 (597)
                      .++.+++...|--..- +... +.+.+. +-.-+ ....-+....|+.++++.++.....-.  .+  ...-..+.-+..
T Consensus       343 ~~f~Naf~naG~~~D~~l~~~~~Wl~k~~~~~k~sA~aSLGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli  422 (963)
T 4ady_A          343 VSVANGFMHAGTTDNSFIKANLPWLGKAQNWAKFTATASLGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLI  422 (963)
T ss_dssp             HHHHHHHHTTTTCCCHHHHHCHHHHHHCCTHHHHHHHHHHHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCcchhhhcchhhhhccchHHHHHHHHHhhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHh
Confidence            4567788887754333 2111 111111 11111 222334557788888888888765411  12  223344455566


Q ss_pred             hcCCHHHHHHHHhhcCC-CC--------h--hHHHHHHHHHHHcCC-hhHHHHHHHHhHHCCCCCCHHHHH--HHHHHHh
Q 007573          250 KVGMLENARLLFERIQP-KD--------C--VSFNAMIAGYAQNGV-AEEALRLFSGMIKMDMQPDDATLV--SVFTACS  315 (597)
Q Consensus       250 ~~g~~~~A~~~~~~~~~-~~--------~--~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~~~~--~ll~~~~  315 (597)
                      .+|..+++..++..... .+        .  ..-..+.-+++-.|. -+++.+.+..+....- +......  .+...+.
T Consensus       423 ~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~eev~e~L~~~L~dd~-~~~~~~AalALGli~v  501 (963)
T 4ady_A          423 YAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSANIEVYEALKEVLYNDS-ATSGEAAALGMGLCML  501 (963)
T ss_dssp             TTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHT
T ss_pred             cCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhc
Confidence            66666667666654332 22        1  112233333333333 2456666666665321 1111111  2222334


Q ss_pred             ccchhHHHHHHHHHHHHhCCCCcccHHHHHHHH--HHhcCCHHHHHHHHhccC-CCChh-hHH---HHHHHHHHcCCHHH
Q 007573          316 ALQLLNEGRQSHVLVIRNGFEANVSVCNAVITM--YSRCGGILDSELAFRQIH-SPNLV-SWN---TIIAAFAQHGHYEK  388 (597)
Q Consensus       316 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~-~~~~~-~~~---~li~~~~~~g~~~~  388 (597)
                      ..|+.+....++..+.+..   +..+...++.+  +.-.|+.+.+..+++.+. ..+.. -|.   ++.-+|+..|+...
T Consensus       502 GTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~a  578 (963)
T 4ady_A          502 GTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYGRQELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSA  578 (963)
T ss_dssp             TCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHH
T ss_pred             ccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHH
Confidence            5667777777777666532   22333333333  335677777777777665 23333 232   23345677888777


Q ss_pred             HHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCH-HHHHHHHhhC
Q 007573          389 ALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQL-EKAWQITQGM  467 (597)
Q Consensus       389 A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~-~~A~~~~~~~  467 (597)
                      ..++++.+.... ..+......+.-++...|+.+.+.++++.+.+  ...|....-..+.-+....|.. .+|.+.+..+
T Consensus       579 Iq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~--~~d~~VR~gAalALGli~aGn~~~~aid~L~~L  655 (963)
T 4ady_A          579 VKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSK--SHNAHVRCGTAFALGIACAGKGLQSAIDVLDPL  655 (963)
T ss_dssp             HHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGG--CSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHH
T ss_pred             HHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHH
Confidence            777888887632 22222222233344445555556666665543  2234444444444444444433 5677777776


Q ss_pred             CCCCCHHHH
Q 007573          468 PFEADTGVW  476 (597)
Q Consensus       468 ~~~p~~~~~  476 (597)
                      ...+|..+-
T Consensus       656 ~~D~d~~Vr  664 (963)
T 4ady_A          656 TKDPVDFVR  664 (963)
T ss_dssp             HTCSSHHHH
T ss_pred             ccCCCHHHH
Confidence            655555443

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=91.10  E-value=4.6  Score=39.72  Aligned_cols=181  Identities=9%  Similarity=0.128  Sum_probs=115.9

Q ss_pred             CCHHHHHHHHhccC---------CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCChHHHHHHHHHH----hcc
Q 007573          353 GGILDSELAFRQIH---------SPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLN-GFDPDGITFLSLLSAC----GHA  418 (597)
Q Consensus       353 g~~~~A~~~~~~~~---------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~ll~~~----~~~  418 (597)
                      |+++.|.+.+-.+.         .........++..|...|+++...+.+.-+... |..+.  ....++..+    ...
T Consensus        30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~--ai~~~V~~~~~~l~~~  107 (445)
T 4b4t_P           30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKL--SIQYMIQKVMEYLKSS  107 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHH--HHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHH--HHHHHHHHHHHHHhcC
Confidence            67888877764443         223456778889999999999998888766643 32222  223333322    222


Q ss_pred             CcHH--HHHHHHHHhHHh--cCCCC---ChHHHHHHHHHHhhcCCHHHHHHHHhhCC---CCC-C----HHHHHHHHHHH
Q 007573          419 GKVN--ESMDLFELMVKV--YGIIP---SSEHYTCLVDILSRAGQLEKAWQITQGMP---FEA-D----TGVWGSLLAAC  483 (597)
Q Consensus       419 g~~~--~a~~~~~~~~~~--~~~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~p-~----~~~~~~l~~~~  483 (597)
                      ...+  .-..+.+.....  ..+-.   .......|...|...|++.+|.+++.++.   ... +    ...+..-+..|
T Consensus       108 ~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~  187 (445)
T 4b4t_P          108 KSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELS  187 (445)
T ss_dssp             CTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred             CchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence            2222  222222211110  01111   12344678899999999999999998875   111 1    33566677789


Q ss_pred             HhcCCHHHHHHHHHHHHh---cCCCC----CchHHHHHHHHHhcCCcHHHHHHHHHHHh
Q 007573          484 VINLNVELGELAAKKMRE---LDPQN----SAVYVMLSNLYAAAGMWRDVTRVRLLMKE  535 (597)
Q Consensus       484 ~~~g~~~~a~~~~~~~~~---~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  535 (597)
                      ...+|+.+|..++.++..   ..+.+    ...+...+..+...++|.+|.+.|..+.+
T Consensus       188 l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~  246 (445)
T 4b4t_P          188 ILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ  246 (445)
T ss_dssp             HHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence            999999999999998753   12332    35667889999999999999988877754

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=88.98  E-value=1.2  Score=43.14  Aligned_cols=59  Identities=10%  Similarity=-0.023  Sum_probs=39.0

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHh
Q 007573          477 GSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRVRLLMKE  535 (597)
Q Consensus       477 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  535 (597)
                      ..++..+...|+.++++..+..++..+|-+...+..++.+|.+.|+..+|.+.|+...+
T Consensus       175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~  233 (388)
T 2ff4_A          175 TAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT  233 (388)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            33445556666777777777777777776666677777777777777777766666543

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=88.48  E-value=2.9  Score=34.11  Aligned_cols=129  Identities=8%  Similarity=0.027  Sum_probs=77.8

Q ss_pred             CCCcchHHHHHHHHHhcCChHHHHHHHhhcCC-----CCcc-------hHHHHHHHHHhCCChhHHHHHHhhCCC-----
Q 007573           47 TQYVFVNNAKISALSRAGKISAARQLFDQMTT-----KDVI-------TWNAIITGYWQNGFLQESKNLFQSMPV-----  109 (597)
Q Consensus        47 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~-------~~~~li~~~~~~g~~~~A~~~~~~~~~-----  109 (597)
                      +.+...+-.-++.+...|.++.|+-+.+.+..     +++.       +...+..++...|++.+|...|++..+     
T Consensus        17 ~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l   96 (167)
T 3ffl_A           17 RGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKAL   96 (167)
T ss_dssp             ----CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC
T ss_pred             CccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHH
Confidence            45556677778888999999999998887643     4431       456778889999999999999988542     


Q ss_pred             -CCcchHHHHHHHHHcCCChHHHHHHHccCCCCChhhHHHHHHHHHcCCChHHHHHHHccCCC--CCchhHHHHHHHH
Q 007573          110 -KNIVSWNCMIAGCIDNDRIDDAFDYFQAMPERNTATYNAMISGFLKHGRLEEATRLFEQMPR--RNVISYTAMLDGF  184 (597)
Q Consensus       110 -~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~  184 (597)
                       .+..+..++.    ........   ..  ...+..+.--+..+|.+.|++++|+.+++.++.  +++.+--.|.+.|
T Consensus        97 ~k~~s~~~~~~----~~ss~p~s---~~--~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~Rt~kvnm~LakLy  165 (167)
T 3ffl_A           97 SKTSKVRPSTG----NSASTPQS---QC--LPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSRQRTPKINMLLANLY  165 (167)
T ss_dssp             ---------------------------C--CCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGGCCHHHHHHHHHHC
T ss_pred             hcCCCcccccc----ccCCCccc---cc--ccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCchhcCHHHHHHHHHHh
Confidence             1221111110    00011100   01  123444555578888999999999999998874  5555555555443

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=88.46  E-value=6.6  Score=44.06  Aligned_cols=192  Identities=7%  Similarity=-0.013  Sum_probs=112.0

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHhccCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-----------------
Q 007573          341 VCNAVITMYSRCGGILDSELAFRQIHSPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDP-----------------  403 (597)
Q Consensus       341 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-----------------  403 (597)
                      ....++..+.+.+..+-+.++..-. +.+...--.+..++...|++++|.+.|.+... |+..                 
T Consensus       814 ~~~~l~~~l~~~~~~~~~~~l~~~~-~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~~~~~~~~~~~~~  891 (1139)
T 4fhn_B          814 LVTELVEKLFLFKQYNACMQLIGWL-NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIAEK  891 (1139)
T ss_dssp             HHHHHHHHHHHHSCTTHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSCSSHHHHHHHHHT
T ss_pred             hHHHHHHHHHHhhhHHHHHHHhhhc-cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhhhhhccccccccc
Confidence            3444555666667776666654433 33444444455667778888888888866421 1111                 


Q ss_pred             ------ChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC---hHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCCCH
Q 007573          404 ------DGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPS---SEHYTCLVDILSRAGQLEKAWQITQGMP-FEADT  473 (597)
Q Consensus       404 ------~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~  473 (597)
                            -..-|..++..+.+.+.++.+.++-..+.+..+-.++   ...|..+.+.+...|++++|...+-.++ ..--.
T Consensus       892 ~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r~  971 (1139)
T 4fhn_B          892 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLKK  971 (1139)
T ss_dssp             TTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSCH
T ss_pred             ccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHHH
Confidence                  1234677777888888888888877776664222211   2257778888888999999988887665 22235


Q ss_pred             HHHHHHHHHHHhcCCHH------------HHHHHHHH-HHhc-CCCC-CchHHHHHHHHHhcCCcHHHHHH-HHHHH
Q 007573          474 GVWGSLLAACVINLNVE------------LGELAAKK-MREL-DPQN-SAVYVMLSNLYAAAGMWRDVTRV-RLLMK  534 (597)
Q Consensus       474 ~~~~~l~~~~~~~g~~~------------~a~~~~~~-~~~~-~p~~-~~~~~~l~~~~~~~g~~~~A~~~-~~~~~  534 (597)
                      ..+..|+...++.|..+            +..+++.. +... ++.+ +..|..|=.-+...|++..|..+ |+.+.
T Consensus       972 ~cLr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~ 1048 (1139)
T 4fhn_B          972 SCLLDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKLS 1048 (1139)
T ss_dssp             HHHHHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHHH
Confidence            66777777766666543            33333322 2222 3444 34444444445566776655543 55553

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=87.66  E-value=5.4  Score=44.76  Aligned_cols=143  Identities=8%  Similarity=0.029  Sum_probs=92.1

Q ss_pred             HHHHHHHHHhCCChhHHHHHHHhcccCCcchHHHHHHHHHcCCChHHHHHHHhhcCC-CC--------------------
Q 007573          177 YTAMLDGFMKKGEVDKARALSDYMSFKNVVSWTVMITGYVKNERFCEARELFYRMPD-YD--------------------  235 (597)
Q Consensus       177 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-~~--------------------  235 (597)
                      ...++..+.+.+.++-+.++.... +.+......+..++...|++++|.+.|.++.. +.                    
T Consensus       815 ~~~l~~~l~~~~~~~~~~~l~~~~-~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~  893 (1139)
T 4fhn_B          815 VTELVEKLFLFKQYNACMQLIGWL-NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYH  893 (1139)
T ss_dssp             HHHHHHHHHHHSCTTHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHhhhHHHHHHHhhhc-cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccccc
Confidence            334566667777777776655443 33444445566677778888888888876633 10                    


Q ss_pred             ---CCchHHHHHHHHHHhcCCHHHHHHHHhhc----CCCCh----hHHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCH
Q 007573          236 ---KNVFVVTAMITGFCKVGMLENARLLFERI----QPKDC----VSFNAMIAGYAQNGVAEEALRLFSGMIKMDMQPDD  304 (597)
Q Consensus       236 ---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~  304 (597)
                         .-..-|..++..+.+.+.++.+.++-...    .+.+.    ..|..+.+.+...|++++|...+..+.....+  .
T Consensus       894 ~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r--~  971 (1139)
T 4fhn_B          894 HQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK--K  971 (1139)
T ss_dssp             SCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC--H
T ss_pred             ccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH--H
Confidence               01123677888888888888777665432    22332    26888999999999999999999888765433  4


Q ss_pred             HHHHHHHHHHhccchhHH
Q 007573          305 ATLVSVFTACSALQLLNE  322 (597)
Q Consensus       305 ~~~~~ll~~~~~~~~~~~  322 (597)
                      ..+..++..++..+..+.
T Consensus       972 ~cLr~LV~~lce~~~~~~  989 (1139)
T 4fhn_B          972 SCLLDFVNQLTKQGKINQ  989 (1139)
T ss_dssp             HHHHHHHHHHHHHCCHHH
T ss_pred             HHHHHHHHHHHhCCChhh
Confidence            556666666665555443

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=87.58  E-value=4.2  Score=39.14  Aligned_cols=71  Identities=10%  Similarity=0.105  Sum_probs=52.9

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHH----hcCCCCChHHHH
Q 007573          374 NTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMVK----VYGIIPSSEHYT  445 (597)
Q Consensus       374 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~----~~~~~p~~~~~~  445 (597)
                      ..++..+...|++++|+..+..+.... +-+...+..++.++.+.|+..+|.+.|+.+.+    +.|+.|++.+-.
T Consensus       175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~  249 (388)
T 2ff4_A          175 TAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA  249 (388)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence            345666777888888888888877542 44677888888888888888888888887654    358888876543

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=87.20  E-value=4.5  Score=32.03  Aligned_cols=65  Identities=11%  Similarity=-0.043  Sum_probs=31.3

Q ss_pred             CCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCCC-CchHHHHHHHHHhcCCcHHHHHHHHHHHh
Q 007573          471 ADTGVWGSLLAACVINLN---VELGELAAKKMRELDPQN-SAVYVMLSNLYAAAGMWRDVTRVRLLMKE  535 (597)
Q Consensus       471 p~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  535 (597)
                      |+..+--.+.+++.++.+   ..+++.+++.+.+.+|.. ...+..|+-++.+.|++++|.++.+.+.+
T Consensus        37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~  105 (144)
T 1y8m_A           37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE  105 (144)
T ss_dssp             SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence            444444444444444432   234555555555544433 34444555555555555555555555544

>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...

Probab=86.96  E-value=3.3  Score=30.37  Aligned_cols=63  Identities=13%  Similarity=0.142  Sum_probs=47.0

Q ss_pred             CHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHH
Q 007573          385 HYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVD  449 (597)
Q Consensus       385 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~  449 (597)
                      +.-+..+-++.+....+-|++......+.+|.+.+++..|.++++.+..+.  .+...+|..++.
T Consensus        25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~--~~~~~iY~~~lq   87 (109)
T 1v54_E           25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA--GPHKEIYPYVIQ   87 (109)
T ss_dssp             CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TTCTTHHHHHHH
T ss_pred             cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh--cCchhhHHHHHH
Confidence            344566666777777788999999999999999999999999998887643  333456766653

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=86.80  E-value=4.5  Score=33.02  Aligned_cols=26  Identities=23%  Similarity=0.197  Sum_probs=14.8

Q ss_pred             HHHHHHHHHhhcCCHHHHHHHHhhCC
Q 007573          443 HYTCLVDILSRAGQLEKAWQITQGMP  468 (597)
Q Consensus       443 ~~~~l~~~~~~~g~~~~A~~~~~~~~  468 (597)
                      .--.+...|.+.|+.++|+.+++.++
T Consensus       124 lkykia~C~~~l~~~~~Ai~~Le~Ip  149 (167)
T 3ffl_A          124 VKYKLAECYTVLKQDKDAIAILDGIP  149 (167)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred             HHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence            33345555566666666666666655

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=86.14  E-value=9  Score=34.15  Aligned_cols=53  Identities=13%  Similarity=0.097  Sum_probs=31.0

Q ss_pred             HHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHH
Q 007573          380 FAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMVK  433 (597)
Q Consensus       380 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~  433 (597)
                      ..+.|+.++|++....-++.. +-|...-..++..++-.|+++.|.+-++...+
T Consensus         7 ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~   59 (273)
T 1zbp_A            7 ALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIK   59 (273)
T ss_dssp             HTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence            345566666666666655542 33444555556666666666666666665543

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=85.93  E-value=3.2  Score=32.41  Aligned_cols=71  Identities=10%  Similarity=-0.010  Sum_probs=42.9

Q ss_pred             CChHHHHHHHHHHhhcCCHH---HHHHHHhhCC-CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch
Q 007573          439 PSSEHYTCLVDILSRAGQLE---KAWQITQGMP-FEA--DTGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAV  509 (597)
Q Consensus       439 p~~~~~~~l~~~~~~~g~~~---~A~~~~~~~~-~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~  509 (597)
                      |++.+--.+..++.+....+   +++.+++++. ..|  ....+--|.-++.+.|++++|.+..+.+++.+|+|..+
T Consensus        38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA  114 (134)
T 3o48_A           38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV  114 (134)
T ss_dssp             SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHH
T ss_pred             CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHH
Confidence            34444444455555554432   3444444432 223  23355566677888888888888888888888887553

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=85.67  E-value=26  Score=33.55  Aligned_cols=57  Identities=14%  Similarity=0.008  Sum_probs=25.9

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHCCCCCC-----hHHHHHHHHHHhccCcHHHHHHHHHHhH
Q 007573          376 IIAAFAQHGHYEKALIFFSQMGLNGFDPD-----GITFLSLLSACGHAGKVNESMDLFELMV  432 (597)
Q Consensus       376 li~~~~~~g~~~~A~~~~~~m~~~g~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~  432 (597)
                      ++..|...|++.+|.+++.++.+.=-..|     ...+..-+..|...+++.++...+....
T Consensus       105 L~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~  166 (394)
T 3txn_A          105 LIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSAR  166 (394)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            44455555555555555555543211111     1123333344455555555555555443

>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A

Probab=85.25  E-value=23  Score=32.58  Aligned_cols=183  Identities=10%  Similarity=0.093  Sum_probs=103.8

Q ss_pred             HHHHcCCChHHHHHHHhhcCCCCCCchHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChhHHHHH-
Q 007573          213 TGYVKNERFCEARELFYRMPDYDKNVFVVTAMITGFCKVGMLENARLLFERIQPKDCVSFNAMIAGYAQNGVAEEALRL-  291 (597)
Q Consensus       213 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~-  291 (597)
                      +.....|++=+|.+.++             ++..-|.+.+++++|.+++..-           ...+.+.|+...|-++ 
T Consensus        21 ~~~I~~G~yYEAhQ~~R-------------tl~~Ry~~~~~~~eAidlL~~g-----------a~~ll~~~Q~~sa~DLa   76 (312)
T 2wpv_A           21 ENKIKAGDYYEAHQTLR-------------TIANRYVRSKSYEHAIELISQG-----------ALSFLKAKQGGSGTDLI   76 (312)
T ss_dssp             HHHHHHTCHHHHHHHHH-------------HHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHH
T ss_pred             HHHhhccChHHHHHHHH-------------HHHHHHHHhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHH
Confidence            34445566666665543             5666677778888888776432           2234556665554443 


Q ss_pred             ---HHHhHHCCCCCCHHHHHHHHHHHhccc-----hhHHHHHHHHHHHHhCC--CCcccHHHHHHHHHHhcCCHHHHHHH
Q 007573          292 ---FSGMIKMDMQPDDATLVSVFTACSALQ-----LLNEGRQSHVLVIRNGF--EANVSVCNAVITMYSRCGGILDSELA  361 (597)
Q Consensus       292 ---~~~m~~~g~~p~~~~~~~ll~~~~~~~-----~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~  361 (597)
                         ++-..+.+++++......++..+....     +.+-.........+.|-  ..++.....+...|.+.|++.+|+..
T Consensus        77 ~llvev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H  156 (312)
T 2wpv_A           77 FYLLEVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERY  156 (312)
T ss_dssp             HHHHHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHH
Confidence               444455677777777766666654422     22223333334444432  24677888888999999999998887


Q ss_pred             HhccCCCChhhHHHHHHHHHHc---CCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHh
Q 007573          362 FRQIHSPNLVSWNTIIAAFAQH---GHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMVKV  434 (597)
Q Consensus       362 ~~~~~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~  434 (597)
                      |-.....+...+..++.-+...   |...++--++-+              .++ -|.-.|++..|..+++...+.
T Consensus       157 ~i~~~~~s~~~~a~~l~~w~~~~~~~~~~e~dlf~~R--------------aVL-~yL~l~n~~~A~~~~~~f~~~  217 (312)
T 2wpv_A          157 FMLGTHDSMIKYVDLLWDWLCQVDDIEDSTVAEFFSR--------------LVF-NYLFISNISFAHESKDIFLER  217 (312)
T ss_dssp             HHTSCHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHH--------------HHH-HHHHTTBHHHHHHHHHHHHHH
T ss_pred             HHhCCCccHHHHHHHHHHHHHhcCCCCcchHHHHHHH--------------HHH-HHHHhcCHHHHHHHHHHHHHH
Confidence            7533222444555544443333   333332221111              122 234567888888888876553

>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*

Probab=84.48  E-value=39  Score=34.64  Aligned_cols=439  Identities=12%  Similarity=0.020  Sum_probs=226.5

Q ss_pred             HhcCChHHHHHHHhhcCCCCcch---HHHHHHHHHhCCChhHHHHHHhhCCCC--CcchHHHHHHHHHcCCChHHHHHHH
Q 007573           61 SRAGKISAARQLFDQMTTKDVIT---WNAIITGYWQNGFLQESKNLFQSMPVK--NIVSWNCMIAGCIDNDRIDDAFDYF  135 (597)
Q Consensus        61 ~~~g~~~~A~~~~~~~~~~~~~~---~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~ll~~~~~~~~~~~A~~~~  135 (597)
                      .+.|++..+.++-..+..-....   |-.+...+ ....+.+...++.+-...  ....-..-+..+.+.+++......+
T Consensus        17 ~~~~~~~~~~~l~~~l~~~pL~~yl~y~~l~~~l-~~~~~~ev~~Fl~~~~~~p~~~~Lr~~~l~~l~~~~~w~~~l~~~   95 (618)
T 1qsa_A           17 WDNRQMDVVEQMMPGLKDYPLYPYLEYRQITDDL-MNQPAVTVTNFVRANPTLPPARTLQSRFVNELARREDWRGLLAFS   95 (618)
T ss_dssp             HHTTCHHHHHHHSGGGTTSTTHHHHHHHHHHHTG-GGCCHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHC
T ss_pred             HHCCCHHHHHHHHHhhcCCCcHHHHHHHHHHhCc-ccCCHHHHHHHHHHCCCChhHHHHHHHHHHHHHhCCCHHHHHHhc
Confidence            46788888888777765422222   22222221 122455666666665532  1222334445566677777777766


Q ss_pred             ccCCCCChhhHHHHHHHHHcCCChHHHHHHHccCC---CCCchhHHHHHHHHHhCCChhHHHHHHHhcccCCcchHHHHH
Q 007573          136 QAMPERNTATYNAMISGFLKHGRLEEATRLFEQMP---RRNVISYTAMLDGFMKKGEVDKARALSDYMSFKNVVSWTVMI  212 (597)
Q Consensus       136 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ll  212 (597)
                      .. .+.+...--....+....|+..+|....+.+=   ...+.....++..+.+.|......-             -.-+
T Consensus        96 ~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~~p~~c~~l~~~~~~~g~lt~~~~-------------~~R~  161 (618)
T 1qsa_A           96 PE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPNACDKLFSVWRASGKQDPLAY-------------LERI  161 (618)
T ss_dssp             CS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCTHHHHHHHHHHHTTCSCHHHH-------------HHHH
T ss_pred             cC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHCCCCCHHHH-------------HHHH
Confidence            65 34444444445566666777555544333321   2345566777777776665543321             1223


Q ss_pred             HHHHcCCChHHHHHHHhhcCCCCCCch-HHHHHHHHHHhcCCHHHHHHHHhhcCCCChh---HHHHHHHHHHHcCChhHH
Q 007573          213 TGYVKNERFCEARELFYRMPDYDKNVF-VVTAMITGFCKVGMLENARLLFERIQPKDCV---SFNAMIAGYAQNGVAEEA  288 (597)
Q Consensus       213 ~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~A  288 (597)
                      ......|+...|..+...+.   ++.. ....++..+..   ...+........ ++..   .+...+.-+.+ .+++.|
T Consensus       162 ~~al~~~~~~~a~~l~~~l~---~~~~~~a~~~~al~~~---p~~~~~~~~~~~-~~~~~~~~~~~~~~rlar-~d~~~A  233 (618)
T 1qsa_A          162 RLAMKAGNTGLVTVLAGQMP---ADYQTIASAIISLANN---PNTVLTFARTTG-ATDFTRQMAAVAFASVAR-QDAENA  233 (618)
T ss_dssp             HHHHHTTCHHHHHHHHHTCC---GGGHHHHHHHHHHHHC---GGGHHHHHHHSC-CCHHHHHHHHHHHHHHHH-HCHHHH
T ss_pred             HHHHHCCCHHHHHHHHHhCC---HHHHHHHHHHHHHHhC---hHhHHHHHhccC-CChhhHHHHHHHHHHHHh-cCHHHH
Confidence            55566777777777766552   2222 22334443333   233333333332 2222   12222333333 378999


Q ss_pred             HHHHHHhHHCCCCCCHHHHHH----HHHHHhccchhHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHhc
Q 007573          289 LRLFSGMIKMDMQPDDATLVS----VFTACSALQLLNEGRQSHVLVIRNGFEANVSVCNAVITMYSRCGGILDSELAFRQ  364 (597)
Q Consensus       289 ~~~~~~m~~~g~~p~~~~~~~----ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  364 (597)
                      ...+....+.+ ..+......    +.......+...++...+.......  .+.....-.+....+.|+++.|...|+.
T Consensus       234 ~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~a~~~~~~  310 (618)
T 1qsa_A          234 RLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGLNTWLAR  310 (618)
T ss_dssp             HHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            99998887644 223332222    2223334452445555555544332  3333344444555678999999999999


Q ss_pred             cCCCC---hhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-
Q 007573          365 IHSPN---LVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPS-  440 (597)
Q Consensus       365 ~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-  440 (597)
                      |....   ....-=+..++...|+.++|..+|..+..    +.  +|..++.+ .+.|..-.       . ......+. 
T Consensus       311 l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~----~~--~fYg~lAa-~~Lg~~~~-------~-~~~~~~~~~  375 (618)
T 1qsa_A          311 LPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ----QR--GFYPMVAA-QRIGEEYE-------L-KIDKAPQNV  375 (618)
T ss_dssp             SCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT----SC--SHHHHHHH-HHTTCCCC-------C-CCCCCCSCC
T ss_pred             ccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc----CC--ChHHHHHH-HHcCCCCC-------C-CCCCCChhH
Confidence            97432   22222344567788999999999999874    22  34443322 22221000       0 00001110 


Q ss_pred             h---H--HHHHHHHHHhhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC---CCCchHHH
Q 007573          441 S---E--HYTCLVDILSRAGQLEKAWQITQGMPFEADTGVWGSLLAACVINLNVELGELAAKKMRELDP---QNSAVYVM  512 (597)
Q Consensus       441 ~---~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p---~~~~~~~~  512 (597)
                      .   .  .-..-+..+...|....|...+..+....+......+.......|..+.++....+....+.   .-|..|..
T Consensus       376 ~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~a~~~~~~~~~v~~~~~~~~~~~~~~~~P~~y~~  455 (618)
T 1qsa_A          376 DSALTQGPEMARVRELMYWNLDNTARSEWANLVKSKSKTEQAQLARYAFNNQWWDLSVQATIAGKLWDHLEERFPLAYND  455 (618)
T ss_dssp             CCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCTTCHHHHSCCTTHH
T ss_pred             HhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhcchhhhCCcchHH
Confidence            0   0  11123456778899999988777654334444444555556678888888766654332221   11344556


Q ss_pred             HHHHHHhcCCcHHHHHHHHHHHhCCCcc
Q 007573          513 LSNLYAAAGMWRDVTRVRLLMKEQGVTK  540 (597)
Q Consensus       513 l~~~~~~~g~~~~A~~~~~~~~~~~~~~  540 (597)
                      ++.-+.+.-.++.+.-.---..+++..+
T Consensus       456 ~i~~~a~~~gv~~~ll~Ai~~~ES~f~p  483 (618)
T 1qsa_A          456 LFKRYTSGKEIPQSYAMAIARQESAWNP  483 (618)
T ss_dssp             HHHHHHTTSSSCHHHHHHHHHHHHTTCT
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHhCCCCC
Confidence            6666666555555443322223444433

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=83.70  E-value=35  Score=33.42  Aligned_cols=206  Identities=11%  Similarity=0.069  Sum_probs=126.4

Q ss_pred             cCChhHHHHHHHHhHHC-----CCCCCHHHHHHHHHHHhccchhHHHHHHHHHHHHhCCCCcc---cHHHHHHHHHHhcC
Q 007573          282 NGVAEEALRLFSGMIKM-----DMQPDDATLVSVFTACSALQLLNEGRQSHVLVIRNGFEANV---SVCNAVITMYSRCG  353 (597)
Q Consensus       282 ~g~~~~A~~~~~~m~~~-----g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g  353 (597)
                      .|+++.|++.+..+.+.     ...........++..|...++++.....+..+.+..-....   ...+.++.......
T Consensus        29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~  108 (445)
T 4b4t_P           29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSK  108 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHC
T ss_pred             cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCC
Confidence            37788998887666542     24445667788899999999999888877666543222211   11222233333333


Q ss_pred             C--HHHHHHHHhccC---CC--Ch-----hhHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCCC---hHHHHHHHHHHh
Q 007573          354 G--ILDSELAFRQIH---SP--NL-----VSWNTIIAAFAQHGHYEKALIFFSQMGLN--GFDPD---GITFLSLLSACG  416 (597)
Q Consensus       354 ~--~~~A~~~~~~~~---~~--~~-----~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~---~~~~~~ll~~~~  416 (597)
                      .  .+.-..+.+.+.   +.  -.     .....+...+...|++.+|.+++..+...  |..+.   ...+..-++.|.
T Consensus       109 ~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l  188 (445)
T 4b4t_P          109 SLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSI  188 (445)
T ss_dssp             TTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence            2  222333444333   11  11     13356778888999999999999998743  32222   235666778889


Q ss_pred             ccCcHHHHHHHHHHhHHh-cCCCCC----hHHHHHHHHHHhhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 007573          417 HAGKVNESMDLFELMVKV-YGIIPS----SEHYTCLVDILSRAGQLEKAWQITQGMPFEADTGVWGSLLAACVINLNVEL  491 (597)
Q Consensus       417 ~~g~~~~a~~~~~~~~~~-~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~  491 (597)
                      ..+++..|..++.++... ....+.    ...+...+..+...+++.+|.+.|.++            ...+...++...
T Consensus       189 ~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~------------~~~~~~~~d~~~  256 (445)
T 4b4t_P          189 LKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEI------------YQTDAIKSDEAK  256 (445)
T ss_dssp             HHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH------------HHHHHHHSCHHH
T ss_pred             HCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH------------HhcccccCCHHH
Confidence            999999999999887532 122222    345677788888899999988776554            344555556555


Q ss_pred             HHHHHHHH
Q 007573          492 GELAAKKM  499 (597)
Q Consensus       492 a~~~~~~~  499 (597)
                      ...++..+
T Consensus       257 ~~~~L~~~  264 (445)
T 4b4t_P          257 WKPVLSHI  264 (445)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            44444433

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16

Probab=83.26  E-value=25  Score=31.54  Aligned_cols=174  Identities=11%  Similarity=-0.010  Sum_probs=87.2

Q ss_pred             CCCcchHHHHHHHHHhcCChHHHHHHHhhcCCCCcchHHHHHHHHHhCCChh----HHHHHHhh--CCCCCcchHHHHHH
Q 007573           47 TQYVFVNNAKISALSRAGKISAARQLFDQMTTKDVITWNAIITGYWQNGFLQ----ESKNLFQS--MPVKNIVSWNCMIA  120 (597)
Q Consensus        47 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~----~A~~~~~~--~~~~~~~~~~~ll~  120 (597)
                      .+|..+-...+.++++.|..+....+.+.+..++...-...+.++.+.|...    ..+.++..  ...++...-...+.
T Consensus        34 ~~~~~vr~~A~~~L~~~~~~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~~~~l~~~L~~~~~~d~~~~vr~~a~~  113 (280)
T 1oyz_A           34 DHNSLKRISSARVLQLRGGQDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCEDNVFNILNNMALNDKSACVRATAIE  113 (280)
T ss_dssp             CSSHHHHHHHHHHHHHHCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHHHHHHHHHHHHHHCSCHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHccCCchHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccchHHHHHHHHHHhcCCCHHHHHHHHH
Confidence            4555555556666666666544444555555566665566666676666432    23334432  12446555666666


Q ss_pred             HHHcCCC-----hHHHHHHHcc-CCCCChhhHHHHHHHHHcCCChHHHHHHHccCCCCCchhHHHHHHHHHhCC-ChhHH
Q 007573          121 GCIDNDR-----IDDAFDYFQA-MPERNTATYNAMISGFLKHGRLEEATRLFEQMPRRNVISYTAMLDGFMKKG-EVDKA  193 (597)
Q Consensus       121 ~~~~~~~-----~~~A~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A  193 (597)
                      ++...+.     ...+...+.. +..++..+-...+.++.+.|+.+..-.+.+-+..++...-...+.++.+.| ....+
T Consensus       114 aL~~l~~~~~~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~  193 (280)
T 1oyz_A          114 STAQRCKKNPIYSPKIVEQSQITAFDKSTNVRRATAFAISVINDKATIPLLINLLKDPNGDVRNWAAFAININKYDNSDI  193 (280)
T ss_dssp             HHHHHHHHCGGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC---CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCHHH
T ss_pred             HHHHHhccCCcccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcHHH
Confidence            6655441     2334444333 346777777777788887776433333333344455555445555554443 12223


Q ss_pred             HHH-HHhcccCCcchHHHHHHHHHcCCC
Q 007573          194 RAL-SDYMSFKNVVSWTVMITGYVKNER  220 (597)
Q Consensus       194 ~~~-~~~m~~~~~~~~~~ll~~~~~~g~  220 (597)
                      ... ...+..++...-...+.++.+.|+
T Consensus       194 ~~~L~~~l~d~~~~vR~~A~~aL~~~~~  221 (280)
T 1oyz_A          194 RDCFVEMLQDKNEEVRIEAIIGLSYRKD  221 (280)
T ss_dssp             HHHHHHHTTCSCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHhCC
Confidence            322 222233444444444455555543

>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}

Probab=83.11  E-value=11  Score=27.41  Aligned_cols=85  Identities=15%  Similarity=0.061  Sum_probs=56.2

Q ss_pred             hHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHhccCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 007573          320 LNEGRQSHVLVIRNGFEANVSVCNAVITMYSRCGGILDSELAFRQIHSPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLN  399 (597)
Q Consensus       320 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  399 (597)
                      .++|..+-+.+...+.  ...+--.-+..+...|++++|..+.+....||...|-++-.  .+.|-.+++...+.++..+
T Consensus        22 HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~s   97 (115)
T 2uwj_G           22 HEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGGS   97 (115)
T ss_dssp             HHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhC
Confidence            4455545444444432  22222222345667899999999999998999999987754  4678888888888888777


Q ss_pred             CCCCChHHHH
Q 007573          400 GFDPDGITFL  409 (597)
Q Consensus       400 g~~p~~~~~~  409 (597)
                      | .|....|.
T Consensus        98 g-~p~~q~Fa  106 (115)
T 2uwj_G           98 S-DPALADFA  106 (115)
T ss_dssp             S-SHHHHHHH
T ss_pred             C-CHHHHHHH
Confidence            6 55555554

>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}

Probab=82.68  E-value=12  Score=27.35  Aligned_cols=85  Identities=14%  Similarity=0.108  Sum_probs=55.5

Q ss_pred             hHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHhccCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 007573          320 LNEGRQSHVLVIRNGFEANVSVCNAVITMYSRCGGILDSELAFRQIHSPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLN  399 (597)
Q Consensus       320 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  399 (597)
                      .++|.-+-+.+...+.  ...+--.-+..+...|++++|..+.+....||...|-++-.  .+.|-.+++...+.++..+
T Consensus        23 HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~s   98 (116)
T 2p58_C           23 HEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLARS   98 (116)
T ss_dssp             HHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhC
Confidence            4455544444444432  22222222345667899999999999999999999988755  4568888888888788776


Q ss_pred             CCCCChHHHH
Q 007573          400 GFDPDGITFL  409 (597)
Q Consensus       400 g~~p~~~~~~  409 (597)
                      | .|....|.
T Consensus        99 g-~p~~q~Fa  107 (116)
T 2p58_C           99 Q-DPRIQTFV  107 (116)
T ss_dssp             C-CHHHHHHH
T ss_pred             C-CHHHHHHH
Confidence            6 55555554

>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A

Probab=82.15  E-value=49  Score=34.09  Aligned_cols=82  Identities=7%  Similarity=0.032  Sum_probs=42.1

Q ss_pred             HHHHHHHHcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhccchhHHHHHHHHHHHHhCCCCcccHHHHHHHHHHh--
Q 007573          274 AMIAGYAQNGVAEEALRLFSGMIKMDMQPDDATLVSVFTACSALQLLNEGRQSHVLVIRNGFEANVSVCNAVITMYSR--  351 (597)
Q Consensus       274 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--  351 (597)
                      .....+.-.|+++.|++.+-+.    ...+.+++...+..+.-.+-   ...++..-  .+ .| ..-+..||..|.+  
T Consensus       299 lYf~vLlLtgqFE~AI~~L~~~----~~vdAVH~AIaL~~~gLL~~---~~~lls~~--~~-~~-~lN~arLI~~Yt~~F  367 (661)
T 2qx5_A          299 YYLQTLLLSGLYGLAIDYTYTF----SEMDAVHLAIGLASLKLFKI---DSSTRLTK--KP-KR-DIRFANILANYTKSF  367 (661)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTT----CHHHHHHHHHHHHHTTC------------------------CHHHHHHHHHTTT
T ss_pred             HHHHHHHHHhhHHHHHHHHHhc----CchhHHHHHHHHHHcCCccC---CCcccccC--CC-cc-cccHHHHHHHHHHHh
Confidence            3555666789999999887654    35566666666655443332   11111100  00 11 2225566666654  


Q ss_pred             -cCCHHHHHHHHhccC
Q 007573          352 -CGGILDSELAFRQIH  366 (597)
Q Consensus       352 -~g~~~~A~~~~~~~~  366 (597)
                       ..+...|.+.|-.+.
T Consensus       368 ~~td~~~Al~Y~~li~  383 (661)
T 2qx5_A          368 RYSDPRVAVEYLVLIT  383 (661)
T ss_dssp             TTTCHHHHHHHHHGGG
T ss_pred             hcCCHHHHHHHHHHHh
Confidence             466777777665553

>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}

Probab=80.68  E-value=8.5  Score=29.96  Aligned_cols=62  Identities=13%  Similarity=0.149  Sum_probs=47.4

Q ss_pred             HHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHH
Q 007573          386 YEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVD  449 (597)
Q Consensus       386 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~  449 (597)
                      .-+..+-++.+....+-|++......+.+|.+.+++..|.++|+-++.+  ..+...+|..+++
T Consensus        69 ~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K--~~~~~~iY~y~lq  130 (152)
T 2y69_E           69 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK--AGPHKEIYPYVIQ  130 (152)
T ss_dssp             HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTTCTTHHHHHHH
T ss_pred             HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--cCCchhhHHHHHH
Confidence            3455666666767778899999999999999999999999999988764  3444556776663

>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}

Probab=80.22  E-value=19  Score=30.40  Aligned_cols=53  Identities=21%  Similarity=0.122  Sum_probs=35.9

Q ss_pred             cCCHHHHHHHHHHHHhcC--CCCCchHHHHHHHHHhcCCcHHHHHHHHHHHhCCC
Q 007573          486 NLNVELGELAAKKMRELD--PQNSAVYVMLSNLYAAAGMWRDVTRVRLLMKEQGV  538 (597)
Q Consensus       486 ~g~~~~a~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  538 (597)
                      .++...+..+|..+...+  -..+..|...+..+...|++++|.++|+.-.+.+.
T Consensus        92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A  146 (202)
T 3esl_A           92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNC  146 (202)
T ss_dssp             TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred             ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence            344567777777776544  33466677777777778888888887777666554

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=80.12  E-value=7.7  Score=40.70  Aligned_cols=51  Identities=10%  Similarity=-0.011  Sum_probs=38.2

Q ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcC
Q 007573          470 EADTGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAG  521 (597)
Q Consensus       470 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g  521 (597)
                      +-+..-|..|+....+.+.+++|++.|+..+... -++.....|+..|.+.+
T Consensus       610 kks~lEWEiLGlla~RL~h~~EA~~a~~~~l~~R-Fs~ka~~kLLeiY~~~~  660 (754)
T 4gns_B          610 KHSGLEWELLGLIMLRTWHWEDAVACLRTSIVAR-FDPVSCQQLLKIYLQPP  660 (754)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-CCHHHHHHHHHHHHSCC
T ss_pred             ccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCHHHHHHHHHHHHhcC
Confidence            3456678888888888888888888888887643 45677778888887766

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	597
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	5e-06
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	7e-05

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.6 bits (109), Expect = 5e-06
 Identities = 27/248 (10%), Positives = 72/248 (29%), Gaps = 19/248 (7%)

Query: 73  FDQMTTKDVITWNAIITGYWQNGFLQESKNLFQSMPVKNIVSWNCMIAGCIDNDRIDDAF 132
           ++            ++    +    +              V+W+ +         I  A 
Sbjct: 130 YNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAI 189

Query: 133 DYFQAMPE---RNTATYNAMISGFLKHGRLEEATRLFEQMPRRNVISYTAML---DGFMK 186
            +F+            Y  + +   +    + A   + +    +             + +
Sbjct: 190 HHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYE 249

Query: 187 KGEVDKA-----RALSDYMSFKNVVSWTVMITGYVKNERFCEARELFYRMPDYDKNVFVV 241
           +G +D A     RA+   +      ++  +     +     EA + +             
Sbjct: 250 QGLIDLAIDTYRRAIE--LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADS 307

Query: 242 TAMITG-FCKVGMLENARLLFER---IQPKDCVSFNAMIAGYAQNGVAEEALRLFSGMIK 297
              +     + G +E A  L+ +   + P+   + + + +   Q G  +EAL  +   I+
Sbjct: 308 LNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 367

Query: 298 MDMQPDDA 305
           +   P  A
Sbjct: 368 IS--PTFA 373

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.1 bits (100), Expect = 7e-05
 Identities = 51/411 (12%), Positives = 119/411 (28%), Gaps = 53/411 (12%)

Query: 127 RIDDAFDYFQAMPER---NTATYNAMISGFLKHGRLEEATRLFEQMPRRN---------- 173
             + A  +   +  +   NT     + S   +  RL+ +        ++N          
Sbjct: 14  DFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNL 73

Query: 174 VISYTAMLDGFMKKGEVDKARALSDYMSFKNVVSWTVMITGYVKNERFCEARELFYRMPD 233
              Y               A  L        +     ++                   PD
Sbjct: 74  GNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD 133

Query: 234 YDKNVFVVTAMITGFCKVGMLENARLLFERIQPKDCVSFNAMIAGYAQNGVAEEALRLFS 293
                  +  ++    ++   +   L     QP   V+++ +   +   G    A+  F 
Sbjct: 134 LYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFE 193

Query: 294 GMIKMDMQPDDATLVSVFTACSALQLLNEGRQSHVLVIRNGFEANVSVCNAVITMYSRCG 353
             + +D  P+                +N G   +VL     F+  V+             
Sbjct: 194 KAVTLD--PNFLDA-----------YINLG---NVLKEARIFDRAVAAYL---------- 227

Query: 354 GILDSELAFRQIHSPNLVSWNTIIAAFAQHGHYEKALIFFSQ-MGLNGFDPDGITFLSLL 412
                      +   + V    +   + + G  + A+  + + + L    PD   + +L 
Sbjct: 228 -------RALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPD--AYCNLA 278

Query: 413 SACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQI-TQGMPFEA 471
           +A    G V E+ D +   +++       +    L +I    G +E+A ++  + +    
Sbjct: 279 NALKEKGSVAEAEDCYNTALRLCPTHA--DSLNNLANIKREQGNIEEAVRLYRKALEVFP 336

Query: 472 DTGVWGSLLAACVINL-NVELGELAAKKMRELDPQNSAVYVMLSNLYAAAG 521
           +     S LA+ +     ++   +  K+   + P  +  Y  + N      
Sbjct: 337 EFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ 387

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	597
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.92
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.91
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.64
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.57
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.2
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.13
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.13
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.09
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.08
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.07
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.07
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.03
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	98.99
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	98.9
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.79
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	98.75
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.68
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	98.64
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.63
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	98.61
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	98.59
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	98.57
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.55
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	98.53
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	98.52
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	98.44
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	98.44
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	98.41
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.37
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	98.36
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.34
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	98.31
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	98.3
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	98.24
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	98.18
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	98.18
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	98.17
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	98.14
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	98.14
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	98.11
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	97.91
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	97.89
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	97.87
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	97.82
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	97.76
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	97.76
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	97.75
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	97.74
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	97.69
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	97.63
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	97.5
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	97.46
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	97.41
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	97.4
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	97.15
d1wy6a1	161	Hypothetical protein ST1625 {Archaeon Sulfolobus t	96.33
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	96.07
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	95.8
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	95.37
d1wy6a1	161	Hypothetical protein ST1625 {Archaeon Sulfolobus t	95.32
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	94.99
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	93.88
d1v54e_	105	Cytochrome c oxidase subunit E {Cow (Bos taurus) [	86.19

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=6.4e-22  Score=194.38  Aligned_cols=368  Identities=12%  Similarity=0.062  Sum_probs=263.6

Q ss_pred             HHHHHcCCChHHHHHHHccCCC--C-CchhHHHHHHHHHhCCChhHHHHHHHhccc--C-CcchHHHHHHHHHcCCChHH
Q 007573          150 ISGFLKHGRLEEATRLFEQMPR--R-NVISYTAMLDGFMKKGEVDKARALSDYMSF--K-NVVSWTVMITGYVKNERFCE  223 (597)
Q Consensus       150 ~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~-~~~~~~~ll~~~~~~g~~~~  223 (597)
                      ...+.+.|++++|.+.++++.+  | ++.++..+...|.+.|++++|+..|++...  | +..++..+..++...|++++
T Consensus         6 a~~~~~~G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~~~~   85 (388)
T d1w3ba_           6 AHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQE   85 (388)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhccccc
Confidence            3445566666666666666542  2 345566666666667777777777666622  2 34566667777777777777


Q ss_pred             HHHHHhhcCCCCCCc-hHHHHHHHHHHhcCCHHHHHHHHhh---cCCCChhHHHHHHHHHHHcCChhHHHHHHHHhHHCC
Q 007573          224 ARELFYRMPDYDKNV-FVVTAMITGFCKVGMLENARLLFER---IQPKDCVSFNAMIAGYAQNGVAEEALRLFSGMIKMD  299 (597)
Q Consensus       224 a~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~---~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g  299 (597)
                      |...+..+.+..|.. .............+....+......   ...................+....+...+.+.....
T Consensus        86 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (388)
T d1w3ba_          86 AIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ  165 (388)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHhhccC
Confidence            777777666644432 2333333334444444333333322   223344455555666666777777777776666542


Q ss_pred             CCCCHHHHHHHHHHHhccchhHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHhccC---CCChhhHHHH
Q 007573          300 MQPDDATLVSVFTACSALQLLNEGRQSHVLVIRNGFEANVSVCNAVITMYSRCGGILDSELAFRQIH---SPNLVSWNTI  376 (597)
Q Consensus       300 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l  376 (597)
                       +-+...+..+...+...|+.+.|...+...++.. +.+...+..+...+...|++++|...++...   +.+...+..+
T Consensus       166 -~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l  243 (388)
T d1w3ba_         166 -PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNL  243 (388)
T ss_dssp             -TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             -cchhHHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHHHHHHHH
Confidence             2234455566666777788888888887777764 4456677888888888999999988887765   5566778888


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCC
Q 007573          377 IAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQ  456 (597)
Q Consensus       377 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~  456 (597)
                      ...+.+.|++++|++.|++..+.. +-+..++..+..++...|++++|.+.++.....  .+.+...+..+...+.+.|+
T Consensus       244 ~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~  320 (388)
T d1w3ba_         244 ACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRL--CPTHADSLNNLANIKREQGN  320 (388)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTC
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhcc--CCccchhhhHHHHHHHHCCC
Confidence            899999999999999999988753 334677888889999999999999999988763  45567888889999999999


Q ss_pred             HHHHHHHHhhCC-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCC
Q 007573          457 LEKAWQITQGMP-FEAD-TGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGM  522 (597)
Q Consensus       457 ~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~  522 (597)
                      +++|.+.+++.. ..|+ ..++..++.++...|++++|+..++++++++|+++.++..++.+|.+.|+
T Consensus       321 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~~~~D  388 (388)
T d1w3ba_         321 IEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD  388 (388)
T ss_dssp             HHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence            999999998865 5564 66888899999999999999999999999999999999999999988875

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=2.4e-21  Score=190.17  Aligned_cols=351  Identities=11%  Similarity=0.053  Sum_probs=289.3

Q ss_pred             HHHHHHhCCChhHHHHHHHhcc--cC-CcchHHHHHHHHHcCCChHHHHHHHhhcCCCCCC-chHHHHHHHHHHhcCCHH
Q 007573          180 MLDGFMKKGEVDKARALSDYMS--FK-NVVSWTVMITGYVKNERFCEARELFYRMPDYDKN-VFVVTAMITGFCKVGMLE  255 (597)
Q Consensus       180 li~~~~~~g~~~~A~~~~~~m~--~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~  255 (597)
                      +...+.+.|++++|+..++++.  .| +...+..+..++...|++++|...++.+.+..|+ ..++..++.+|.+.|+++
T Consensus         5 la~~~~~~G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~~~   84 (388)
T d1w3ba_           5 LAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQ   84 (388)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhcccc
Confidence            4567788999999999999983  34 5678888999999999999999999999887775 567888999999999999


Q ss_pred             HHHHHHhhcCC---CChhHHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhccchhHHHHHHHHHHHH
Q 007573          256 NARLLFERIQP---KDCVSFNAMIAGYAQNGVAEEALRLFSGMIKMDMQPDDATLVSVFTACSALQLLNEGRQSHVLVIR  332 (597)
Q Consensus       256 ~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~  332 (597)
                      +|...+.....   .+...+..........+....+............. ...............+....+.........
T Consensus        85 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (388)
T d1w3ba_          85 EAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD-LYCVRSDLGNLLKALGRLEEAKACYLKAIE  163 (388)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT-CTHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccchhhhhHHHHHHhhc
Confidence            99999988654   34455666666666777777777766666555433 333334444555566677777777776666


Q ss_pred             hCCCCcccHHHHHHHHHHhcCCHHHHHHHHhccC---CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHH
Q 007573          333 NGFEANVSVCNAVITMYSRCGGILDSELAFRQIH---SPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFL  409 (597)
Q Consensus       333 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~  409 (597)
                      .. +.+...+..+...+...|+.++|...++...   +.+...|..+...+...|++++|+..+++....+ +.+...+.
T Consensus       164 ~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~  241 (388)
T d1w3ba_         164 TQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHG  241 (388)
T ss_dssp             HC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHH
T ss_pred             cC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhHHHHHH
Confidence            54 4556778888999999999999999998765   5567789999999999999999999999988754 45567788


Q ss_pred             HHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHhcC
Q 007573          410 SLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMP--FEADTGVWGSLLAACVINL  487 (597)
Q Consensus       410 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g  487 (597)
                      .+...+.+.|++++|...|+++.+.  .+-+...+..+...|...|++++|.+.++...  .+.+...+..+...+...|
T Consensus       242 ~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  319 (388)
T d1w3ba_         242 NLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQG  319 (388)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHHCC
Confidence            8889999999999999999998763  23347889999999999999999999998765  4557788999999999999


Q ss_pred             CHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHh
Q 007573          488 NVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRVRLLMKE  535 (597)
Q Consensus       488 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  535 (597)
                      ++++|+..++++++.+|+++.++..++.+|...|++++|++.+++..+
T Consensus       320 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  367 (388)
T d1w3ba_         320 NIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR  367 (388)
T ss_dssp             CHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999875

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=1.5e-14  Score=137.61  Aligned_cols=227  Identities=14%  Similarity=0.016  Sum_probs=161.4

Q ss_pred             HHHHHHHHcCChhHHHHHHHHhHHCCCCC-CHHHHHHHHHHHhccchhHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhc
Q 007573          274 AMIAGYAQNGVAEEALRLFSGMIKMDMQP-DDATLVSVFTACSALQLLNEGRQSHVLVIRNGFEANVSVCNAVITMYSRC  352 (597)
Q Consensus       274 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  352 (597)
                      .....+.+.|++++|+..|+++++.  .| +...+..+..++...|+++.|...+..+++.. +.+...+..+...|...
T Consensus        24 ~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~  100 (323)
T d1fcha_          24 EEGLRRLQEGDLPNAVLLFEAAVQQ--DPKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNE  100 (323)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-ccccccccccccccccc
Confidence            4566788888888888888888875  34 34455555566666666666666666665543 22334444444445555


Q ss_pred             CCHHHHHHHHhccCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCh----------------HHHHHHHHHHh
Q 007573          353 GGILDSELAFRQIHSPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDG----------------ITFLSLLSACG  416 (597)
Q Consensus       353 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----------------~~~~~ll~~~~  416 (597)
                      |++++|.+                               .+++.....  |+.                ......+..+.
T Consensus       101 ~~~~~A~~-------------------------------~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (323)
T d1fcha_         101 SLQRQACE-------------------------------ILRDWLRYT--PAYAHLVTPAEEGAGGAGLGPSKRILGSLL  147 (323)
T ss_dssp             TCHHHHHH-------------------------------HHHHHHHTS--TTTGGGCC---------------CTTHHHH
T ss_pred             cccccccc-------------------------------chhhHHHhc--cchHHHHHhhhhhhhhcccccchhhHHHHH
Confidence            55555544                               444443321  110                00111122333


Q ss_pred             ccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHH
Q 007573          417 HAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMP-FEA-DTGVWGSLLAACVINLNVELGEL  494 (597)
Q Consensus       417 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~  494 (597)
                      ..+...++.+.+..+.+...-.++...+..+...+...|++++|...+++.. ..| +...|..++..+...|++++|+.
T Consensus       148 ~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~  227 (323)
T d1fcha_         148 SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVA  227 (323)
T ss_dssp             HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HhhHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHH
Confidence            4566778888888877654445567788889999999999999999998865 344 57789999999999999999999


Q ss_pred             HHHHHHhcCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHhC
Q 007573          495 AAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRVRLLMKEQ  536 (597)
Q Consensus       495 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  536 (597)
                      .++++++++|+++.++..++.+|.+.|++++|++.|++..+.
T Consensus       228 ~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l  269 (323)
T d1fcha_         228 AYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNM  269 (323)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999998874

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=2.9e-13  Score=128.42  Aligned_cols=267  Identities=12%  Similarity=0.030  Sum_probs=196.4

Q ss_pred             HHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhccc
Q 007573          242 TAMITGFCKVGMLENARLLFERIQP---KDCVSFNAMIAGYAQNGVAEEALRLFSGMIKMDMQPDDATLVSVFTACSALQ  318 (597)
Q Consensus       242 ~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~  318 (597)
                      -.....+.+.|++++|...|+++.+   .++.+|..+..++...|++++|+..|.+..+.. +-+...+..+...+...|
T Consensus        23 ~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~  101 (323)
T d1fcha_          23 FEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNES  101 (323)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-cccccccccccccccccc
Confidence            3467778999999999999998753   467799999999999999999999999998753 224566777888899999


Q ss_pred             hhHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHhccCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 007573          319 LLNEGRQSHVLVIRNGFEANVSVCNAVITMYSRCGGILDSELAFRQIHSPNLVSWNTIIAAFAQHGHYEKALIFFSQMGL  398 (597)
Q Consensus       319 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  398 (597)
                      ++++|...+..+....... ............                ..+.......+..+...+.+.+|.+.+.+..+
T Consensus       102 ~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~  164 (323)
T d1fcha_         102 LQRQACEILRDWLRYTPAY-AHLVTPAEEGAG----------------GAGLGPSKRILGSLLSDSLFLEVKELFLAAVR  164 (323)
T ss_dssp             CHHHHHHHHHHHHHTSTTT-GGGCC-------------------------------CTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccccchhhHHHhccch-HHHHHhhhhhhh----------------hcccccchhhHHHHHHhhHHHHHHHHHHHHHH
Confidence            9999999999988764211 111000000000                00111111122334455677888888888776


Q ss_pred             CC-CCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCC-CHHH
Q 007573          399 NG-FDPDGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMP-FEA-DTGV  475 (597)
Q Consensus       399 ~g-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~  475 (597)
                      .. -.++...+..+...+...|++++|...++......  +-+...|..++..|.+.|++++|.+.+++.. ..| +..+
T Consensus       165 ~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a  242 (323)
T d1fcha_         165 LDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR--PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRS  242 (323)
T ss_dssp             HSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HhhcccccccchhhHHHHHHHHHHhhhhcccccccccc--cccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHH
Confidence            43 23456778888889999999999999999988642  2347788999999999999999999998865 445 5678


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc-----------hHHHHHHHHHhcCCcHHHHH
Q 007573          476 WGSLLAACVINLNVELGELAAKKMRELDPQNSA-----------VYVMLSNLYAAAGMWRDVTR  528 (597)
Q Consensus       476 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~-----------~~~~l~~~~~~~g~~~~A~~  528 (597)
                      |..++.+|...|++++|+..|+++++++|++..           .+..+..++...|+.+.+..
T Consensus       243 ~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~~  306 (323)
T d1fcha_         243 RYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGA  306 (323)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            999999999999999999999999999887643           34556777777777765543

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.20  E-value=3.3e-09  Score=101.03  Aligned_cols=261  Identities=13%  Similarity=-0.011  Sum_probs=162.5

Q ss_pred             HHHHHHhcCCHHHHHHHHhhcCC---CC-----hhHHHHHHHHHHHcCChhHHHHHHHHhHHCCC-CCCHHHHHHHHHHH
Q 007573          244 MITGFCKVGMLENARLLFERIQP---KD-----CVSFNAMIAGYAQNGVAEEALRLFSGMIKMDM-QPDDATLVSVFTAC  314 (597)
Q Consensus       244 l~~~~~~~g~~~~A~~~~~~~~~---~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~~~ll~~~  314 (597)
                      ....+...|++++|+..+++...   .+     ..+++.+...|...|++++|+..|++..+... .++...        
T Consensus        18 rA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~--------   89 (366)
T d1hz4a_          18 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHY--------   89 (366)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH--------
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHH--------
Confidence            34555666666666666655321   11     12455566666666666666666666544210 011100        


Q ss_pred             hccchhHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHhccC-------CCC----hhhHHHHHHHHHHc
Q 007573          315 SALQLLNEGRQSHVLVIRNGFEANVSVCNAVITMYSRCGGILDSELAFRQIH-------SPN----LVSWNTIIAAFAQH  383 (597)
Q Consensus       315 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~----~~~~~~li~~~~~~  383 (597)
                                             ....+..+...+...|++..+...+....       .+.    ...+..+...+...
T Consensus        90 -----------------------~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~  146 (366)
T d1hz4a_          90 -----------------------ALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAW  146 (366)
T ss_dssp             -----------------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHT
T ss_pred             -----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHh
Confidence                                   01123334445555566555555554332       111    12445566677788


Q ss_pred             CCHHHHHHHHHHHHHCCC----CCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-----hHHHHHHHHHHhhc
Q 007573          384 GHYEKALIFFSQMGLNGF----DPDGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPS-----SEHYTCLVDILSRA  454 (597)
Q Consensus       384 g~~~~A~~~~~~m~~~g~----~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~  454 (597)
                      |+++.+...+........    .....++......+...+....+...+...........+     ...+..+...+...
T Consensus       147 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (366)
T d1hz4a_         147 ARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMT  226 (366)
T ss_dssp             TCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHT
T ss_pred             cchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhc
Confidence            888888888887765321    122345555666677788888888877766554222221     23455667778889


Q ss_pred             CCHHHHHHHHhhCC-CCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc------CCCCCchHHHHHHHHHhcCC
Q 007573          455 GQLEKAWQITQGMP-FEA-----DTGVWGSLLAACVINLNVELGELAAKKMREL------DPQNSAVYVMLSNLYAAAGM  522 (597)
Q Consensus       455 g~~~~A~~~~~~~~-~~p-----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~p~~~~~~~~l~~~~~~~g~  522 (597)
                      |++++|...+++.. ..|     ....+..+..++...|++++|...+++++..      .|....++..++.+|...|+
T Consensus       227 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~  306 (366)
T d1hz4a_         227 GDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGR  306 (366)
T ss_dssp             TCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred             ccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCC
Confidence            99999999988765 211     2345667788899999999999999988753      23336678889999999999


Q ss_pred             cHHHHHHHHHHHh
Q 007573          523 WRDVTRVRLLMKE  535 (597)
Q Consensus       523 ~~~A~~~~~~~~~  535 (597)
                      +++|.+.+++..+
T Consensus       307 ~~~A~~~l~~Al~  319 (366)
T d1hz4a_         307 KSDAQRVLLDALK  319 (366)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999988765

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.13  E-value=7.8e-10  Score=100.46  Aligned_cols=193  Identities=11%  Similarity=-0.068  Sum_probs=110.4

Q ss_pred             HHhccchhHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHhccC---CCChhhHHHHHHHHHHcCCHHHH
Q 007573          313 ACSALQLLNEGRQSHVLVIRNGFEANVSVCNAVITMYSRCGGILDSELAFRQIH---SPNLVSWNTIIAAFAQHGHYEKA  389 (597)
Q Consensus       313 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A  389 (597)
                      ++...|++++|...++.+++.. +.+..+++.+..+|.+.|++++|+..|+++.   +.+..+|..+...+...|++++|
T Consensus        46 ~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A  124 (259)
T d1xnfa_          46 LYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLA  124 (259)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHHHhhHHHH
Confidence            3334444444444444444433 3345566667777777777777777777665   44556777788888888888888


Q ss_pred             HHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCC----HHHHHHHHh
Q 007573          390 LIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQ----LEKAWQITQ  465 (597)
Q Consensus       390 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~----~~~A~~~~~  465 (597)
                      ++.|++..+.. +.+......+..++.+.+..+....+.......   .+....+. ++..+.....    .+.+...+.
T Consensus       125 ~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  199 (259)
T d1xnfa_         125 QDDLLAFYQDD-PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS---DKEQWGWN-IVEFYLGNISEQTLMERLKADAT  199 (259)
T ss_dssp             HHHHHHHHHHC-TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS---CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCC
T ss_pred             HHHHHHHHhhc-cccHHHHHHHHHHHHHhhhHHHHHHHHHHhhcc---chhhhhhh-HHHHHHHHHHHHHHHHHHHHHHH
Confidence            88888887653 223444333444445555555554444444332   22222222 2222222222    222222222


Q ss_pred             hCC-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHH
Q 007573          466 GMP-FEAD-TGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYV  511 (597)
Q Consensus       466 ~~~-~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~  511 (597)
                      ... ..|+ ..+|..++..+...|++++|+..|+++++.+|++...|.
T Consensus       200 ~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  247 (259)
T d1xnfa_         200 DNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHR  247 (259)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHHHH
T ss_pred             HhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHH
Confidence            111 2232 346777888889999999999999999999998755443

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.13  E-value=1.6e-09  Score=103.20  Aligned_cols=292  Identities=9%  Similarity=-0.063  Sum_probs=172.8

Q ss_pred             HHHHHHHcCCChHHHHHHHhhcCCCCCCc------hHHHHHHHHHHhcCCHHHHHHHHhhcCC-----CC----hhHHHH
Q 007573          210 VMITGYVKNERFCEARELFYRMPDYDKNV------FVVTAMITGFCKVGMLENARLLFERIQP-----KD----CVSFNA  274 (597)
Q Consensus       210 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~  274 (597)
                      .....+...|++++|+++++...+..|+.      .++..+...|...|++++|...|++...     ++    ...+..
T Consensus        17 lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~   96 (366)
T d1hz4a_          17 LRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQ   96 (366)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHH
Confidence            34556677888888888888777655542      3456677888888999988888877543     12    235666


Q ss_pred             HHHHHHHcCChhHHHHHHHHhHHC----CCCCC--H-HHHHHHHHHHhccchhHHHHHHHHHHHHhCCCCcccHHHHHHH
Q 007573          275 MIAGYAQNGVAEEALRLFSGMIKM----DMQPD--D-ATLVSVFTACSALQLLNEGRQSHVLVIRNGFEANVSVCNAVIT  347 (597)
Q Consensus       275 li~~~~~~g~~~~A~~~~~~m~~~----g~~p~--~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  347 (597)
                      +...+...|++..+...+.+....    +..+.  . ..+..+...+...|+++.+...+............        
T Consensus        97 ~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~--------  168 (366)
T d1hz4a_          97 QSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQP--------  168 (366)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCG--------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhh--------
Confidence            777888899999998888776531    11111  1 12222233334444444444444444332211100        


Q ss_pred             HHHhcCCHHHHHHHHhccCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCCC----hHHHHHHHHHHhccCcH
Q 007573          348 MYSRCGGILDSELAFRQIHSPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLN--GFDPD----GITFLSLLSACGHAGKV  421 (597)
Q Consensus       348 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~----~~~~~~ll~~~~~~g~~  421 (597)
                                         ......+..+...+...++..++...+.+....  .....    ...+......+...|++
T Consensus       169 -------------------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (366)
T d1hz4a_         169 -------------------QQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDK  229 (366)
T ss_dssp             -------------------GGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             -------------------hhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccH
Confidence                               011223344445556667777776666554431  11111    12344455566777888


Q ss_pred             HHHHHHHHHhHHhcCCCC--ChHHHHHHHHHHhhcCCHHHHHHHHhhCC-------CCCC-HHHHHHHHHHHHhcCCHHH
Q 007573          422 NESMDLFELMVKVYGIIP--SSEHYTCLVDILSRAGQLEKAWQITQGMP-------FEAD-TGVWGSLLAACVINLNVEL  491 (597)
Q Consensus       422 ~~a~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~p~-~~~~~~l~~~~~~~g~~~~  491 (597)
                      ++|...++...+...-.+  ....+..+..++...|++++|...+++..       ..|+ ..++..+...+...|++++
T Consensus       230 ~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  309 (366)
T d1hz4a_         230 AAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSD  309 (366)
T ss_dssp             HHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred             HHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHH
Confidence            888887776653211111  13345567778888888888888877653       2233 3467777888899999999


Q ss_pred             HHHHHHHHHhcCCCC---------CchHHHHHHHHHhcCCcHHHHH
Q 007573          492 GELAAKKMRELDPQN---------SAVYVMLSNLYAAAGMWRDVTR  528 (597)
Q Consensus       492 a~~~~~~~~~~~p~~---------~~~~~~l~~~~~~~g~~~~A~~  528 (597)
                      |.+.+++++++.+..         ...+..++..+...++.+++.+
T Consensus       310 A~~~l~~Al~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~e~e~  355 (366)
T d1hz4a_         310 AQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQ  355 (366)
T ss_dssp             HHHHHHHHHHHHHHHCCCHHHHTTHHHHHHHHHHHHHTTCSCHHHH
T ss_pred             HHHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHHHHHhcCCChHHHH
Confidence            999999988764432         2234445556666777776654

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.09  E-value=1.3e-09  Score=101.86  Aligned_cols=187  Identities=11%  Similarity=0.039  Sum_probs=84.2

Q ss_pred             HHhccchhHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcC-CHHHHHHHHhccC---CCChhhHHHHHHHHHHcCCHHH
Q 007573          313 ACSALQLLNEGRQSHVLVIRNGFEANVSVCNAVITMYSRCG-GILDSELAFRQIH---SPNLVSWNTIIAAFAQHGHYEK  388 (597)
Q Consensus       313 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~  388 (597)
                      .+.+.+..++|...++.+++.+ |.+...|+....++...| ++++|+..++...   +.+..+|+.+...+.+.|++++
T Consensus        52 ~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~~l~~~~e  130 (315)
T d2h6fa1          52 VLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQ  130 (315)
T ss_dssp             HHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTT
T ss_pred             HHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHhhccHHH
Confidence            3444455555555555555543 333444444444444443 2455555554443   3344455555555555555555


Q ss_pred             HHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHhhcCC------HHHHH
Q 007573          389 ALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIP-SSEHYTCLVDILSRAGQ------LEKAW  461 (597)
Q Consensus       389 A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~------~~~A~  461 (597)
                      |++.++++.+.. +-+...|..+...+.+.|++++|.+.++.+.+.   .| +...|+.+..++.+.+.      +++|.
T Consensus       131 Al~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~---~p~n~~a~~~r~~~l~~~~~~~~~~~~~~ai  206 (315)
T d2h6fa1         131 ELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE---DVRNNSVWNQRYFVISNTTGYNDRAVLEREV  206 (315)
T ss_dssp             HHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCSCSHHHHHHHH
T ss_pred             HHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHH---CCccHHHHHHHHHHHHHccccchhhhhHHhH
Confidence            555555554431 223444555555555555555555555555432   22 23344444443333332      33444


Q ss_pred             HHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 007573          462 QITQGMP-FEA-DTGVWGSLLAACVINLNVELGELAAKKMRELDPQ  505 (597)
Q Consensus       462 ~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~  505 (597)
                      +.+.+.. ..| +...|..+...+... ..+++...++++.++.|.
T Consensus       207 ~~~~~al~~~P~~~~~~~~l~~ll~~~-~~~~~~~~~~~~~~l~~~  251 (315)
T d2h6fa1         207 QYTLEMIKLVPHNESAWNYLKGILQDR-GLSKYPNLLNQLLDLQPS  251 (315)
T ss_dssp             HHHHHHHHHSTTCHHHHHHHHHHHTTT-CGGGCHHHHHHHHHHTTT
T ss_pred             HHHHHHHHhCCCchHHHHHHHHHHHhc-ChHHHHHHHHHHHHhCCC
Confidence            4443332 222 333444443333222 234444444444444444

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.08  E-value=5.5e-10  Score=101.45  Aligned_cols=195  Identities=13%  Similarity=0.018  Sum_probs=141.0

Q ss_pred             cHHHHHHHHHHhcCCHHHHHHHHhccC---CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHh
Q 007573          340 SVCNAVITMYSRCGGILDSELAFRQIH---SPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACG  416 (597)
Q Consensus       340 ~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~  416 (597)
                      .++..+..+|.+.|++++|+..|++..   +.++.+|+.+..++...|++++|++.|+++.+.. +-+..++..+..++.
T Consensus        38 ~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~  116 (259)
T d1xnfa_          38 QLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIALY  116 (259)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHH-hhhhhhHHHHHHHHH
Confidence            456677889999999999999999876   5678899999999999999999999999999853 334678888999999


Q ss_pred             ccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCCCHHHHHHHHHHHH----hcCCHHH
Q 007573          417 HAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMP-FEADTGVWGSLLAACV----INLNVEL  491 (597)
Q Consensus       417 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~~~~~----~~g~~~~  491 (597)
                      ..|++++|...|+...+..  +.+......+...+.+.+..+.+..+..... ..++...+.. +..+.    ..+..+.
T Consensus       117 ~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  193 (259)
T d1xnfa_         117 YGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNI-VEFYLGNISEQTLMER  193 (259)
T ss_dssp             HTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTHHHH-HHHHTTSSCHHHHHHH
T ss_pred             HHhhHHHHHHHHHHHHhhc--cccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccchhhhhhhH-HHHHHHHHHHHHHHHH
Confidence            9999999999999998752  2344444445555556665555444433322 1222222221 22221    2233455


Q ss_pred             HHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHhCCC
Q 007573          492 GELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRVRLLMKEQGV  538 (597)
Q Consensus       492 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  538 (597)
                      +...+.......|....++..++.+|...|++++|.+.|++.....+
T Consensus       194 ~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p  240 (259)
T d1xnfa_         194 LKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNV  240 (259)
T ss_dssp             HHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC
Confidence            55555555556666677889999999999999999999999887553

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.07  E-value=3.3e-09  Score=99.00  Aligned_cols=207  Identities=13%  Similarity=0.105  Sum_probs=148.7

Q ss_pred             hHHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCHH-HHHHHHHHHhccc-hhHHHHHHHHHHHHhCCCCcccHHHHHHH
Q 007573          270 VSFNAMIAGYAQNGVAEEALRLFSGMIKMDMQPDDA-TLVSVFTACSALQ-LLNEGRQSHVLVIRNGFEANVSVCNAVIT  347 (597)
Q Consensus       270 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  347 (597)
                      .+++.+...+.+.+.+++|+.+++++++.  .|+.. .|.....++...+ +.++|...++.+++.. +-+..+|+.+..
T Consensus        44 ~a~~~~~~~~~~~e~~~~Al~~~~~ai~l--nP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~~  120 (315)
T d2h6fa1          44 DVYDYFRAVLQRDERSERAFKLTRDAIEL--NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV  120 (315)
T ss_dssp             HHHHHHHHHHHHTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCchHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHHHhH
Confidence            46777888888899999999999999885  56544 4555566666655 5899999999988876 567788888899


Q ss_pred             HHHhcCCHHHHHHHHhccC---CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccC-----
Q 007573          348 MYSRCGGILDSELAFRQIH---SPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAG-----  419 (597)
Q Consensus       348 ~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g-----  419 (597)
                      .+.+.|++++|+..++++.   +.+...|..+...+...|++++|++.++++++.. +-+...|+.+...+.+.+     
T Consensus       121 ~~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~-p~n~~a~~~r~~~l~~~~~~~~~  199 (315)
T d2h6fa1         121 LVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDR  199 (315)
T ss_dssp             HHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSH
T ss_pred             HHHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHC-CccHHHHHHHHHHHHHccccchh
Confidence            9999999999999998876   5678889999999999999999999999998753 334556766655544433     


Q ss_pred             -cHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCC---CHHHHHHHHHHH
Q 007573          420 -KVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMP-FEA---DTGVWGSLLAAC  483 (597)
Q Consensus       420 -~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p---~~~~~~~l~~~~  483 (597)
                       .+++|.+.+..+.+.  .+.+...|..+...+...| .+++.+.++... ..|   +...+..++..|
T Consensus       200 ~~~~~ai~~~~~al~~--~P~~~~~~~~l~~ll~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y  265 (315)
T d2h6fa1         200 AVLEREVQYTLEMIKL--VPHNESAWNYLKGILQDRG-LSKYPNLLNQLLDLQPSHSSPYLIAFLVDIY  265 (315)
T ss_dssp             HHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTTTC-GGGCHHHHHHHHHHTTTCCCHHHHHHHHHHH
T ss_pred             hhhHHhHHHHHHHHHh--CCCchHHHHHHHHHHHhcC-hHHHHHHHHHHHHhCCCcCCHHHHHHHHHHH
Confidence             367888888887764  2334667777766665544 455555554432 222   344444444443

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.07  E-value=1e-08  Score=95.46  Aligned_cols=178  Identities=6%  Similarity=-0.020  Sum_probs=96.9

Q ss_pred             HHHHHHHhccC----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHh
Q 007573          356 LDSELAFRQIH----SPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFELM  431 (597)
Q Consensus       356 ~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~  431 (597)
                      ++|..+|++..    +.+...|...+..+...|+.++|..+|+++.+.........|...+..+.+.|+.+.|.++|+.+
T Consensus        81 ~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~a  160 (308)
T d2onda1          81 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKA  160 (308)
T ss_dssp             HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence            44444444322    23344555555556666666666666666654321122334555666666666666666666665


Q ss_pred             HHhcCCCCChHHHHHHHHHH-hhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-
Q 007573          432 VKVYGIIPSSEHYTCLVDIL-SRAGQLEKAWQITQGMP--FEADTGVWGSLLAACVINLNVELGELAAKKMRELDPQNS-  507 (597)
Q Consensus       432 ~~~~~~~p~~~~~~~l~~~~-~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~-  507 (597)
                      .+.  .+.+...|...+... ...|+.+.|.++|+.+.  .+.+...|...+......|++++|..+|+++++..|.++ 
T Consensus       161 l~~--~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~  238 (308)
T d2onda1         161 RED--ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPE  238 (308)
T ss_dssp             HTS--TTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGG
T ss_pred             HHh--CCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChH
Confidence            542  122233333333322 23456666666666554  233455666666666666666666666666666555432 


Q ss_pred             ---chHHHHHHHHHhcCCcHHHHHHHHHHHh
Q 007573          508 ---AVYVMLSNLYAAAGMWRDVTRVRLLMKE  535 (597)
Q Consensus       508 ---~~~~~l~~~~~~~g~~~~A~~~~~~~~~  535 (597)
                         ..+...+......|+.+.+.++++++.+
T Consensus       239 ~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~  269 (308)
T d2onda1         239 KSGEIWARFLAFESNIGDLASILKVEKRRFT  269 (308)
T ss_dssp             GCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence               2455555555566666666666666654

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.03  E-value=2.1e-08  Score=93.29  Aligned_cols=188  Identities=10%  Similarity=0.039  Sum_probs=150.1

Q ss_pred             chhHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHhccC---CCC-hhhHHHHHHHHHHcCCHHHHHHHH
Q 007573          318 QLLNEGRQSHVLVIRNGFEANVSVCNAVITMYSRCGGILDSELAFRQIH---SPN-LVSWNTIIAAFAQHGHYEKALIFF  393 (597)
Q Consensus       318 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~-~~~~~~li~~~~~~g~~~~A~~~~  393 (597)
                      +..+.+..+++..++...+.+...+...+..+.+.|+.+.|..+|+.+.   +.+ ...|...+..+.+.|+.++|.++|
T Consensus        78 ~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~  157 (308)
T d2onda1          78 LFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIF  157 (308)
T ss_dssp             HHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHH
Confidence            4567788888888876656667788888999999999999999999875   223 347899999999999999999999


Q ss_pred             HHHHHCCCCCChHHHHHHHHH-HhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC----
Q 007573          394 SQMGLNGFDPDGITFLSLLSA-CGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMP----  468 (597)
Q Consensus       394 ~~m~~~g~~p~~~~~~~ll~~-~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----  468 (597)
                      .++.+.+ +.+...|...... +...|+.+.|..+|+.+.+.+  +.+...+...++.+.+.|+.+.|..+|++..    
T Consensus       158 ~~al~~~-~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~--p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~  234 (308)
T d2onda1         158 KKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGS  234 (308)
T ss_dssp             HHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSS
T ss_pred             HHHHHhC-CCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhh--hhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Confidence            9998764 3334444443332 345689999999999998753  4457889999999999999999999999853    


Q ss_pred             CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 007573          469 FEAD--TGVWGSLLAACVINLNVELGELAAKKMRELDPQNSA  508 (597)
Q Consensus       469 ~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~  508 (597)
                      ..|+  ...|...+..-...|+.+.+..+++++.+..|....
T Consensus       235 ~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~~~  276 (308)
T d2onda1         235 LPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEYE  276 (308)
T ss_dssp             SCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTTS
T ss_pred             CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCccccc
Confidence            2332  458999998888999999999999999999887643

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.99  E-value=9.6e-10  Score=104.06  Aligned_cols=228  Identities=10%  Similarity=-0.074  Sum_probs=146.7

Q ss_pred             CChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhcc--chhHHHHHHHHHHHHhCCCCcccH-HHHHHHHHHhcCCHHHHH
Q 007573          283 GVAEEALRLFSGMIKMDMQPDDATLVSVFTACSAL--QLLNEGRQSHVLVIRNGFEANVSV-CNAVITMYSRCGGILDSE  359 (597)
Q Consensus       283 g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~  359 (597)
                      |++++|+..++...+.. +-+...+.....++...  ++.+.+...+..+++... .+... +......+...|..++|.
T Consensus        87 ~~~~~al~~~~~~l~~~-pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~-~~~~~~~~~~~~~~~~~~~~~~Al  164 (334)
T d1dcea1          87 ALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAEEL  164 (334)
T ss_dssp             HHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTCCCHHHHH
T ss_pred             HHHHHHHHHHHHHHHhC-CCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCc-hhhhhhhhHHHHHHHhccccHHHH
Confidence            33455666666555432 11222333333333333  235566666666655542 22333 334446667778888888


Q ss_pred             HHHhccC---CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcC
Q 007573          360 LAFRQIH---SPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMVKVYG  436 (597)
Q Consensus       360 ~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~  436 (597)
                      ..++.+.   +.+..+|+.+...+...|++++|...+++..+.  .|+.   ......+...+..+++...+.....  .
T Consensus       165 ~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~---~~~~~~~~~l~~~~~a~~~~~~~l~--~  237 (334)
T d1dcea1         165 AFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENV--LLKE---LELVQNAFFTDPNDQSAWFYHRWLL--G  237 (334)
T ss_dssp             HHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHH--HHHH---HHHHHHHHHHCSSCSHHHHHHHHHH--S
T ss_pred             HHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHh--HHHH---HHHHHHHHHhcchhHHHHHHHHHHH--h
Confidence            8888776   455677888888888888887776555443321  1211   1222333445556667777776665  3


Q ss_pred             CCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHH
Q 007573          437 IIPSSEHYTCLVDILSRAGQLEKAWQITQGMP-FEAD-TGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLS  514 (597)
Q Consensus       437 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~  514 (597)
                      -+++...+..++..+...|+.++|...+.+.. ..|+ ..+|..++..+...|++++|+..++++++++|.+...|..|.
T Consensus       238 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~L~  317 (334)
T d1dcea1         238 RAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLR  317 (334)
T ss_dssp             CCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred             CcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHHHHHH
Confidence            34445566677788888899999999988765 4453 457888889999999999999999999999999888888887


Q ss_pred             HHHHh
Q 007573          515 NLYAA  519 (597)
Q Consensus       515 ~~~~~  519 (597)
                      ..+.-
T Consensus       318 ~~~~~  322 (334)
T d1dcea1         318 SKFLL  322 (334)
T ss_dssp             HHHHH
T ss_pred             HHHhH
Confidence            77654

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.90  E-value=3.5e-10  Score=107.19  Aligned_cols=246  Identities=11%  Similarity=-0.045  Sum_probs=173.9

Q ss_pred             cCChhHHHHHHHHhHHCCCCCCHHHH-H---HHHHH-------HhccchhHHHHHHHHHHHHhCCCCcccHHHHHHHHHH
Q 007573          282 NGVAEEALRLFSGMIKMDMQPDDATL-V---SVFTA-------CSALQLLNEGRQSHVLVIRNGFEANVSVCNAVITMYS  350 (597)
Q Consensus       282 ~g~~~~A~~~~~~m~~~g~~p~~~~~-~---~ll~~-------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  350 (597)
                      .+..++|++++++..+.  .|+..+. +   .++..       ....+.++++...++.+++.. +.+...+..+..++.
T Consensus        42 ~~~~~~al~~~~~~l~~--~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~-pk~~~~~~~~~~~~~  118 (334)
T d1dcea1          42 GELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLS  118 (334)
T ss_dssp             TCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             ccccHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC-CCcHHHHHHhhHHHH
Confidence            33457888888888764  5665432 1   12222       224456778888888888775 556667777777776


Q ss_pred             hcC--CHHHHHHHHhccC---CCChhhHHH-HHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHH
Q 007573          351 RCG--GILDSELAFRQIH---SPNLVSWNT-IIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNES  424 (597)
Q Consensus       351 ~~g--~~~~A~~~~~~~~---~~~~~~~~~-li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a  424 (597)
                      ..+  ++++|...+..+.   +++...|.. ....+...+.+++|+..++++.+.. +-+...|..+..++...|++++|
T Consensus       119 ~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~-p~~~~a~~~l~~~~~~~~~~~~A  197 (334)
T d1dcea1         119 RLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDS  197 (334)
T ss_dssp             TCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCS
T ss_pred             HhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCHHHH
Confidence            665  4788988888875   455666654 4466677899999999999888753 34567788888888888888777


Q ss_pred             HHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 007573          425 MDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMP--FEADTGVWGSLLAACVINLNVELGELAAKKMREL  502 (597)
Q Consensus       425 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  502 (597)
                      ...+....+.   .|+   ...+...+...+..+++...+....  .+++...+..++..+...|+.++|...+.++.+.
T Consensus       198 ~~~~~~~~~~---~~~---~~~~~~~~~~l~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  271 (334)
T d1dcea1         198 GPQGRLPENV---LLK---ELELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCKELQELEPE  271 (334)
T ss_dssp             SSCCSSCHHH---HHH---HHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHhHHh---HHH---HHHHHHHHHHhcchhHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence            6655544432   111   1123334455666666776665543  2334445666777788889999999999999999


Q ss_pred             CCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHhCC
Q 007573          503 DPQNSAVYVMLSNLYAAAGMWRDVTRVRLLMKEQG  537 (597)
Q Consensus       503 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  537 (597)
                      +|.+..++..++.+|...|++++|.+.+++..+..
T Consensus       272 ~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ld  306 (334)
T d1dcea1         272 NKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVD  306 (334)
T ss_dssp             CHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHC
T ss_pred             CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence            99999999999999999999999999999988743

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.79  E-value=3.1e-08  Score=76.84  Aligned_cols=90  Identities=11%  Similarity=-0.006  Sum_probs=69.3

Q ss_pred             HHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcH
Q 007573          447 LVDILSRAGQLEKAWQITQGMP--FEADTGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGMWR  524 (597)
Q Consensus       447 l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~  524 (597)
                      -+..+.+.|++++|+..|++..  .+.+...|..+..++...|++++|+..+.++++++|+++..|..++.++...|+++
T Consensus         9 ~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~   88 (117)
T d1elwa_           9 KGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFE   88 (117)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCHH
Confidence            3456677777777777777764  33356678888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHHHHHhC
Q 007573          525 DVTRVRLLMKEQ  536 (597)
Q Consensus       525 ~A~~~~~~~~~~  536 (597)
                      +|+..+++..+.
T Consensus        89 ~A~~~~~~a~~~  100 (117)
T d1elwa_          89 EAKRTYEEGLKH  100 (117)
T ss_dssp             HHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHh
Confidence            888888887653

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.75  E-value=2.9e-08  Score=85.81  Aligned_cols=112  Identities=9%  Similarity=-0.107  Sum_probs=67.7

Q ss_pred             CChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCCC-HHHHHHHH
Q 007573          403 PDGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMP-FEAD-TGVWGSLL  480 (597)
Q Consensus       403 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~  480 (597)
                      |+...+......+.+.|++++|...|+++.+.  -+.++..|..++.+|.+.|++++|+..|++.. ..|+ ..+|..++
T Consensus         2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~--~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg   79 (201)
T d2c2la1           2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG   79 (201)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHH
Confidence            55555666666666677777777777666553  12235566666666666666666666666654 4443 44666666


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 007573          481 AACVINLNVELGELAAKKMRELDPQNSAVYVMLSNL  516 (597)
Q Consensus       481 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~  516 (597)
                      .++...|++++|+..++++++++|++...+...++.
T Consensus        80 ~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~~~~~~  115 (201)
T d2c2la1          80 QCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPS  115 (201)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence            666666666666666666666666544433333333

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.68  E-value=1.4e-07  Score=72.94  Aligned_cols=105  Identities=11%  Similarity=0.041  Sum_probs=86.6

Q ss_pred             HHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHhcCC
Q 007573          411 LLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMP--FEADTGVWGSLLAACVINLN  488 (597)
Q Consensus       411 ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~  488 (597)
                      -...+...|++++|...|+.+++.  -+.+...|..+..+|...|++++|+..+++..  .+.+...|..++.++...|+
T Consensus         9 ~g~~~~~~g~~~eAi~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~   86 (117)
T d1elwa_           9 KGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNR   86 (117)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhc--CCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccC
Confidence            345677788888888888888764  23347788888888999999999999888765  34467789999999999999


Q ss_pred             HHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 007573          489 VELGELAAKKMRELDPQNSAVYVMLSNLY  517 (597)
Q Consensus       489 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~  517 (597)
                      +++|+..++++++++|+++.++..+.++-
T Consensus        87 ~~~A~~~~~~a~~~~p~~~~~~~~l~~l~  115 (117)
T d1elwa_          87 FEEAKRTYEEGLKHEANNPQLKEGLQNME  115 (117)
T ss_dssp             HHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHh
Confidence            99999999999999999988887777654

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.64  E-value=2.4e-07  Score=76.37  Aligned_cols=87  Identities=16%  Similarity=0.059  Sum_probs=48.1

Q ss_pred             HHHhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcHHH
Q 007573          449 DILSRAGQLEKAWQITQGMP-FEA-DTGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRDV  526 (597)
Q Consensus       449 ~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A  526 (597)
                      ..|.+.|++++|...|++.. ..| +...|..++.++...|++++|+..++++++++|++..++..++.+|...|++++|
T Consensus        18 n~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~~~eA   97 (159)
T d1a17a_          18 NDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAA   97 (159)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCCHHHH
Confidence            44455555555555555543 222 3445555555555555555555555555555555555555555555555555555


Q ss_pred             HHHHHHHHh
Q 007573          527 TRVRLLMKE  535 (597)
Q Consensus       527 ~~~~~~~~~  535 (597)
                      .+.+++...
T Consensus        98 ~~~~~~a~~  106 (159)
T d1a17a_          98 LRDYETVVK  106 (159)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            555555544

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=98.63  E-value=5.6e-08  Score=74.63  Aligned_cols=89  Identities=18%  Similarity=0.026  Sum_probs=80.0

Q ss_pred             HHHHHHhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCc
Q 007573          446 CLVDILSRAGQLEKAWQITQGMP-FEA-DTGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGMW  523 (597)
Q Consensus       446 ~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~  523 (597)
                      .++..+.+.|++++|...+++.. ..| +...|..++.++...|++++|+..++++++++|+++.++..++.+|...|++
T Consensus        21 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g~~  100 (112)
T d1hxia_          21 EEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNA  100 (112)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCCCH
Confidence            45667888999999999998876 455 5779999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHH
Q 007573          524 RDVTRVRLLMK  534 (597)
Q Consensus       524 ~~A~~~~~~~~  534 (597)
                      ++|.+.+++..
T Consensus       101 ~~A~~~l~~~l  111 (112)
T d1hxia_         101 NAALASLRAWL  111 (112)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            99999998753

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.61  E-value=4.7e-07  Score=77.01  Aligned_cols=122  Identities=11%  Similarity=0.001  Sum_probs=69.5

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcC
Q 007573          377 IAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPS-SEHYTCLVDILSRAG  455 (597)
Q Consensus       377 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g  455 (597)
                      ...+...|++++|++.|.++    .+|++.++..+..++...|++++|.+.|++.++.   .|+ ...|..+..+|.+.|
T Consensus        12 g~~~~~~~d~~~Al~~~~~i----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~l---dp~~~~a~~~~g~~~~~~g   84 (192)
T d1hh8a_          12 GVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINR---DKHLAVAYFQRGMLYYQTE   84 (192)
T ss_dssp             HHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHCCCHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHH---hhhhhhhHHHHHHHHHhhc
Confidence            34455666677776666543    2455566666666666666677776666666643   232 555666666666666


Q ss_pred             CHHHHHHHHhhCC--CCC---------------C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 007573          456 QLEKAWQITQGMP--FEA---------------D-TGVWGSLLAACVINLNVELGELAAKKMRELDPQ  505 (597)
Q Consensus       456 ~~~~A~~~~~~~~--~~p---------------~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~  505 (597)
                      ++++|.+.|++..  .++               + ..++..+..++...|++++|.+.+++++++.|.
T Consensus        85 ~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~  152 (192)
T d1hh8a_          85 KYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE  152 (192)
T ss_dssp             CHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred             cHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence            6666666555432  010               0 133444555555666666666666666665554

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.59  E-value=8.2e-07  Score=75.45  Aligned_cols=148  Identities=8%  Similarity=-0.011  Sum_probs=115.0

Q ss_pred             HHHHHhcCCHHHHHHHHhccCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHH
Q 007573          346 ITMYSRCGGILDSELAFRQIHSPNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESM  425 (597)
Q Consensus       346 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~  425 (597)
                      ...+...|+++.|++.|..+.+++..+|..+..+|...|++++|++.|++.++.. +-+...|..+..++.+.|++++|.
T Consensus        12 g~~~~~~~d~~~Al~~~~~i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~~~g~~~~A~   90 (192)
T d1hh8a_          12 GVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYDLAI   90 (192)
T ss_dssp             HHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHHhhccHHHHH
Confidence            4566788999999999999999999999999999999999999999999999863 344778899999999999999999


Q ss_pred             HHHHHhHHhcC-----------C--CCC-hHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCCCHHHHHHHHHHHHhcCCHH
Q 007573          426 DLFELMVKVYG-----------I--IPS-SEHYTCLVDILSRAGQLEKAWQITQGMP-FEADTGVWGSLLAACVINLNVE  490 (597)
Q Consensus       426 ~~~~~~~~~~~-----------~--~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~  490 (597)
                      ..|++......           .  .++ ..++..+..++.+.|++++|.+.++... ..|+.           .++..+
T Consensus        91 ~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~-----------~~~~~~  159 (192)
T d1hh8a_          91 KDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP-----------RHSKID  159 (192)
T ss_dssp             HHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG-----------GGGHHH
T ss_pred             HHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc-----------chHHHH
Confidence            99998875211           1  111 3566778889999999999999988754 44543           333456


Q ss_pred             HHHHHHHHHHhcCCC
Q 007573          491 LGELAAKKMRELDPQ  505 (597)
Q Consensus       491 ~a~~~~~~~~~~~p~  505 (597)
                      .|+..+.+....+|.
T Consensus       160 ~Al~~~~~~~~~~~~  174 (192)
T d1hh8a_         160 KAMECVWKQKLYEPV  174 (192)
T ss_dssp             HHHHHHHTTCCCCCC
T ss_pred             HHHHHHHhhhhCCcc
Confidence            666665555444543

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.57  E-value=4.4e-07  Score=74.65  Aligned_cols=117  Identities=5%  Similarity=-0.052  Sum_probs=93.1

Q ss_pred             HHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCC
Q 007573          411 LLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMP-FEA-DTGVWGSLLAACVINLN  488 (597)
Q Consensus       411 ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~  488 (597)
                      ....+.+.|++++|...|+++.+..  +-+...|..+...|...|++++|...|++.. ..| +..+|..++.++...|+
T Consensus        16 ~gn~~~~~~~y~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~   93 (159)
T d1a17a_          16 QANDYFKAKDYENAIKFYSQAIELN--PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGK   93 (159)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHcCCHHHHHHHhhhccccc--hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCC
Confidence            3456778888888888888888641  3347788888889999999999999988775 445 56799999999999999


Q ss_pred             HHHHHHHHHHHHhcCCCCCchHHHHHHHH--HhcCCcHHHHHH
Q 007573          489 VELGELAAKKMRELDPQNSAVYVMLSNLY--AAAGMWRDVTRV  529 (597)
Q Consensus       489 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~--~~~g~~~~A~~~  529 (597)
                      +++|+..++++++++|.++.++..+..+.  ...+.+++|...
T Consensus        94 ~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~  136 (159)
T d1a17a_          94 FRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAG  136 (159)
T ss_dssp             HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            99999999999999999988877776553  344556666654

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.55  E-value=3.8e-07  Score=83.65  Aligned_cols=191  Identities=11%  Similarity=-0.014  Sum_probs=130.3

Q ss_pred             HHHHHHHHhcCCHHHHHHHHhccCC-----CC----hhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCC---CCC--hHHH
Q 007573          343 NAVITMYSRCGGILDSELAFRQIHS-----PN----LVSWNTIIAAFAQHGHYEKALIFFSQMGLNGF---DPD--GITF  408 (597)
Q Consensus       343 ~~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~p~--~~~~  408 (597)
                      ......|...|++++|.+.|.+...     .+    ..+|..+..+|.+.|++++|++.+++..+.-.   .+.  ..++
T Consensus        41 ~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~  120 (290)
T d1qqea_          41 VQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFK  120 (290)
T ss_dssp             HHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHH
Confidence            3345678888888888888876651     22    34788888999999999999999987654211   111  3456


Q ss_pred             HHHHHHHh-ccCcHHHHHHHHHHhHHhcCCCCC----hHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCCC-------H-H
Q 007573          409 LSLLSACG-HAGKVNESMDLFELMVKVYGIIPS----SEHYTCLVDILSRAGQLEKAWQITQGMP-FEAD-------T-G  474 (597)
Q Consensus       409 ~~ll~~~~-~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-------~-~  474 (597)
                      ..+...+. ..|++++|.+.+++..+......+    ..++..++..|...|++++|.+.++++. ..|+       . .
T Consensus       121 ~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~  200 (290)
T d1qqea_         121 FELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKD  200 (290)
T ss_dssp             HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHH
T ss_pred             HHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHH
Confidence            66666664 469999999999887653221111    4457888999999999999999998754 1111       1 2


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc-----hHHHHHHHHHh--cCCcHHHHHHHHHH
Q 007573          475 VWGSLLAACVINLNVELGELAAKKMRELDPQNSA-----VYVMLSNLYAA--AGMWRDVTRVRLLM  533 (597)
Q Consensus       475 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~-----~~~~l~~~~~~--~g~~~~A~~~~~~~  533 (597)
                      .+...+-.+...|+++.|...++++.+.+|..+.     .+..++.++..  .+.+++|+..|+++
T Consensus       201 ~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~  266 (290)
T d1qqea_         201 YFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNF  266 (290)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence            3445555677889999999999999999886432     34556666655  34578888877643

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.53  E-value=1.9e-07  Score=80.50  Aligned_cols=96  Identities=6%  Similarity=-0.058  Sum_probs=61.6

Q ss_pred             CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hHHHHH
Q 007573          368 PNLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPS-SEHYTC  446 (597)
Q Consensus       368 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~  446 (597)
                      |+...+......+.+.|++++|+..|++.++.. +.+...|..+..+|.+.|++++|...|+.+.   .+.|+ ...|..
T Consensus         2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al---~l~p~~~~a~~~   77 (201)
T d2c2la1           2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRAL---ELDGQSVKAHFF   77 (201)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHT---TSCTTCHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHH---HhCCCcHHHHHH
Confidence            444555556666677777777777777666542 3345566666667777777777777776665   34454 556666


Q ss_pred             HHHHHhhcCCHHHHHHHHhhC
Q 007573          447 LVDILSRAGQLEKAWQITQGM  467 (597)
Q Consensus       447 l~~~~~~~g~~~~A~~~~~~~  467 (597)
                      ++.+|.+.|++++|...|+++
T Consensus        78 lg~~~~~l~~~~~A~~~~~~a   98 (201)
T d2c2la1          78 LGQCQLEMESYDEAIANLQRA   98 (201)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHH
Confidence            777777777777777766654

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.52  E-value=1.7e-07  Score=72.66  Aligned_cols=103  Identities=11%  Similarity=-0.054  Sum_probs=68.2

Q ss_pred             HHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCC---HHHHHHHHhhCC-CCCCH---HHHHHHHHH
Q 007573          410 SLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQ---LEKAWQITQGMP-FEADT---GVWGSLLAA  482 (597)
Q Consensus       410 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~-~~p~~---~~~~~l~~~  482 (597)
                      .+++.+...+++++|.+.|+...+.  -+.++.++..+..++.+.++   .++|+.+++++. ..|+.   .+|..|+.+
T Consensus         4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~--~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~   81 (122)
T d1nzna_           4 AVLNELVSVEDLLKFEKKFQSEKAA--GSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG   81 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence            4566677777788888888777753  23346677777777766544   345777777654 33332   256667777


Q ss_pred             HHhcCCHHHHHHHHHHHHhcCCCCCchHHHHH
Q 007573          483 CVINLNVELGELAAKKMRELDPQNSAVYVMLS  514 (597)
Q Consensus       483 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~  514 (597)
                      |...|++++|++.++++++++|++..+.....
T Consensus        82 y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~  113 (122)
T d1nzna_          82 NYRLKEYEKALKYVRGLLQTEPQNNQAKELER  113 (122)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHhhhHHHHHHHHHHHHhCcCCHHHHHHHH
Confidence            77777787788888877777777766544443

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.44  E-value=2.2e-06  Score=71.07  Aligned_cols=133  Identities=13%  Similarity=0.024  Sum_probs=93.7

Q ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHH
Q 007573          372 SWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDIL  451 (597)
Q Consensus       372 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~  451 (597)
                      .+......+.+.|++++|+..|++.+..-  |..            .+..+.-......+        ...+|..+..+|
T Consensus        15 ~l~~~G~~~~~~~~~~~Ai~~y~~al~~~--~~~------------~~~~~~~~~~~~~~--------~~~~~~nla~~y   72 (170)
T d1p5qa1          15 IVKERGTVYFKEGKYKQALLQYKKIVSWL--EYE------------SSFSNEEAQKAQAL--------RLASHLNLAMCH   72 (170)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTC------------CCCCSHHHHHHHHH--------HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHh--hhc------------cccchHHHhhhchh--------HHHHHHHHHHHH
Confidence            34455566777888888888887776521  100            00000000111111        123567788889


Q ss_pred             hhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcHHH
Q 007573          452 SRAGQLEKAWQITQGMP-FEA-DTGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRDV  526 (597)
Q Consensus       452 ~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A  526 (597)
                      .+.|++++|+..+++.. ..| ++..|..++.++...|++++|+..|+++++++|+++.+...+..+..+.+...+.
T Consensus        73 ~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~  149 (170)
T d1p5qa1          73 LKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAR  149 (170)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999998866 455 6779999999999999999999999999999999999988888887766655543

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.44  E-value=5.8e-07  Score=69.61  Aligned_cols=92  Identities=8%  Similarity=-0.070  Sum_probs=56.6

Q ss_pred             HHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhcCCCC--CchHHHHHHHHH
Q 007573          446 CLVDILSRAGQLEKAWQITQGMP--FEADTGVWGSLLAACVINL---NVELGELAAKKMRELDPQN--SAVYVMLSNLYA  518 (597)
Q Consensus       446 ~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~~  518 (597)
                      .+++.+...+++++|++.|++..  .+.+..++..++.++.+.+   ++++|+.+++++++.+|.+  ..++..++.+|.
T Consensus         4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~   83 (122)
T d1nzna_           4 AVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNY   83 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHH
Confidence            45556666666777777666654  2334556666666665433   3445666677766666554  235666677777


Q ss_pred             hcCCcHHHHHHHHHHHhCC
Q 007573          519 AAGMWRDVTRVRLLMKEQG  537 (597)
Q Consensus       519 ~~g~~~~A~~~~~~~~~~~  537 (597)
                      +.|++++|++.|+++.+..
T Consensus        84 ~~g~~~~A~~~~~~aL~~~  102 (122)
T d1nzna_          84 RLKEYEKALKYVRGLLQTE  102 (122)
T ss_dssp             HTTCHHHHHHHHHHHHHHC
T ss_pred             HHhhhHHHHHHHHHHHHhC
Confidence            7777777777777666543

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.41  E-value=2.3e-06  Score=70.94  Aligned_cols=64  Identities=11%  Similarity=-0.108  Sum_probs=59.4

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHhCC
Q 007573          474 GVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRVRLLMKEQG  537 (597)
Q Consensus       474 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  537 (597)
                      .+|+.+..+|.+.|++++|+..++++++++|+++.++..++.+|...|++++|+..|+...+..
T Consensus        63 ~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~  126 (170)
T d1p5qa1          63 ASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY  126 (170)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhC
Confidence            3567788889999999999999999999999999999999999999999999999999998743

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.37  E-value=2.4e-06  Score=78.12  Aligned_cols=165  Identities=11%  Similarity=0.003  Sum_probs=125.1

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCC-hHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC----hHH
Q 007573          373 WNTIIAAFAQHGHYEKALIFFSQMGLN----GFDPD-GITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPS----SEH  443 (597)
Q Consensus       373 ~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~  443 (597)
                      |......|...|++++|.+.|.+..+.    +-+++ ..+|..+..+|.+.|++++|.+.++...+.+.-..+    ..+
T Consensus        40 y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~  119 (290)
T d1qqea_          40 CVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANF  119 (290)
T ss_dssp             HHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHH
Confidence            444577889999999999999988653    21222 357888899999999999999999987654322222    445


Q ss_pred             HHHHHHHHhh-cCCHHHHHHHHhhCC----CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-------
Q 007573          444 YTCLVDILSR-AGQLEKAWQITQGMP----FEAD----TGVWGSLLAACVINLNVELGELAAKKMRELDPQNS-------  507 (597)
Q Consensus       444 ~~~l~~~~~~-~g~~~~A~~~~~~~~----~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~-------  507 (597)
                      +..+...|.. .|++++|.+.+++..    ...+    ..++..++..+...|++++|+..++++....|.++       
T Consensus       120 ~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~  199 (290)
T d1qqea_         120 KFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLK  199 (290)
T ss_dssp             HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHH
T ss_pred             HHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHH
Confidence            6667777754 699999999998754    1111    33678888999999999999999999999887764       


Q ss_pred             chHHHHHHHHHhcCCcHHHHHHHHHHHhCC
Q 007573          508 AVYVMLSNLYAAAGMWRDVTRVRLLMKEQG  537 (597)
Q Consensus       508 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  537 (597)
                      ..+...+.++...|+++.|.+.+++..+..
T Consensus       200 ~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~  229 (290)
T d1qqea_         200 DYFLKKGLCQLAATDAVAAARTLQEGQSED  229 (290)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHGGGCC-
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence            234567778888999999999999876543

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.36  E-value=3.4e-06  Score=68.52  Aligned_cols=83  Identities=13%  Similarity=0.013  Sum_probs=69.9

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHhCCCccCCCeeEEEECCEE
Q 007573          474 GVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRVRLLMKEQGVTKQCAYSWIEIGNKV  553 (597)
Q Consensus       474 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~s~~~~~~~~  553 (597)
                      .++..+..+|.+.|++++|+..++++++++|.+..+|..++.+|...|++++|+..|+...+.                 
T Consensus        68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l-----------------  130 (153)
T d2fbna1          68 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASL-----------------  130 (153)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----------------
T ss_pred             HHHhhHHHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHh-----------------
Confidence            467778888999999999999999999999999999999999999999999999999998763                 


Q ss_pred             EEEEeCCCCCcchHHHHHHHHHHHHHHhh
Q 007573          554 HYFLGGDMSHPCIDKIHLELKRASVQMKS  582 (597)
Q Consensus       554 ~~~~~~~~~~p~~~~~~~~l~~~~~~~~~  582 (597)
                               +|...++...+..+..++++
T Consensus       131 ---------~P~n~~~~~~l~~~~~kl~~  150 (153)
T d2fbna1         131 ---------NPNNLDIRNSYELCVNKLKE  150 (153)
T ss_dssp             ---------STTCHHHHHHHHHHHHHHHH
T ss_pred             ---------CCCCHHHHHHHHHHHHHHHH
Confidence                     45556666666666666554

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.34  E-value=2.2e-06  Score=67.17  Aligned_cols=92  Identities=11%  Similarity=0.045  Sum_probs=76.4

Q ss_pred             HHHHHHHHhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc-------hHHHHH
Q 007573          444 YTCLVDILSRAGQLEKAWQITQGMP-FEA-DTGVWGSLLAACVINLNVELGELAAKKMRELDPQNSA-------VYVMLS  514 (597)
Q Consensus       444 ~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~-------~~~~l~  514 (597)
                      +..+...+.+.|++++|++.|++.. ..| +...+..+..+|...|++++|+..++++++++|+++.       +|..++
T Consensus         7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg   86 (128)
T d1elra_           7 EKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG   86 (128)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHH
Confidence            4456778888999999999988765 344 5778999999999999999999999999999888754       456677


Q ss_pred             HHHHhcCCcHHHHHHHHHHHh
Q 007573          515 NLYAAAGMWRDVTRVRLLMKE  535 (597)
Q Consensus       515 ~~~~~~g~~~~A~~~~~~~~~  535 (597)
                      ..+...+++++|++.+++...
T Consensus        87 ~~~~~~~~~~~A~~~~~kal~  107 (128)
T d1elra_          87 NSYFKEEKYKDAIHFYNKSLA  107 (128)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHhCCHHHHHHHHHHHHh
Confidence            788888999999999988764

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=98.31  E-value=0.00019  Score=64.00  Aligned_cols=227  Identities=11%  Similarity=-0.008  Sum_probs=135.7

Q ss_pred             ChhHHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhc----cchhHHHHHHHHHHHHhCCCCcccHHH
Q 007573          268 DCVSFNAMIAGYAQNGVAEEALRLFSGMIKMDMQPDDATLVSVFTACSA----LQLLNEGRQSHVLVIRNGFEANVSVCN  343 (597)
Q Consensus       268 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~  343 (597)
                      |+..+..|...+...+++++|++.|++..+.|   +...+..+-..+..    ..+...+...+....+.+         
T Consensus         1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---------   68 (265)
T d1ouva_           1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---------   68 (265)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---------
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---------
Confidence            45566777777777888888888888877655   22222222222221    223334444333333332         


Q ss_pred             HHHHHHHhcCCHHHHHHHHhccCCCChhhHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCChHHHHHHHHH--Hhc
Q 007573          344 AVITMYSRCGGILDSELAFRQIHSPNLVSWNTIIAAFAQ----HGHYEKALIFFSQMGLNGFDPDGITFLSLLSA--CGH  417 (597)
Q Consensus       344 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~--~~~  417 (597)
                                               +......+...+..    .++.+.|...++...+.|.. ...........  ...
T Consensus        69 -------------------------~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~-~a~~~l~~~~~~~~~~  122 (265)
T d1ouva_          69 -------------------------YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYA-EGCASLGGIYHDGKVV  122 (265)
T ss_dssp             -------------------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHCSSS
T ss_pred             -------------------------ccchhhccccccccccccchhhHHHHHHHhhhhhhhhh-hHHHhhcccccCCCcc
Confidence                                     22223333333222    35667777777777766522 22111111111  122


Q ss_pred             cCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhh----cCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHh----cCCH
Q 007573          418 AGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSR----AGQLEKAWQITQGMPFEADTGVWGSLLAACVI----NLNV  489 (597)
Q Consensus       418 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~  489 (597)
                      ......+...+.....    ..+...+..|...|..    ..+...+...++......+......+...+..    ..++
T Consensus       123 ~~~~~~a~~~~~~~~~----~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~A~~~lg~~y~~g~~~~~d~  198 (265)
T d1ouva_         123 TRDFKKAVEYFTKACD----LNDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNF  198 (265)
T ss_dssp             CCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCH
T ss_pred             cchhHHHHHHhhhhhc----ccccchhhhhhhhhccCCCcccccccchhhhhccccccccccccchhhhcccCcccccch
Confidence            3456666666665543    2345666667666664    45667777777665534566777777766654    5689


Q ss_pred             HHHHHHHHHHHhcCCCCCchHHHHHHHHHh----cCCcHHHHHHHHHHHhCCC
Q 007573          490 ELGELAAKKMRELDPQNSAVYVMLSNLYAA----AGMWRDVTRVRLLMKEQGV  538 (597)
Q Consensus       490 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~  538 (597)
                      ++|+..|+++.+.+  ++..+..|+.+|.+    ..+.++|.++|++..+.|.
T Consensus       199 ~~A~~~~~~aa~~g--~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~  249 (265)
T d1ouva_         199 KEALARYSKACELE--NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA  249 (265)
T ss_dssp             HHHHHHHHHHHHTT--CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred             hhhhhhHhhhhccc--CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcC
Confidence            99999999998875  46788899999986    4489999999999988774

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=98.30  E-value=7.2e-06  Score=67.76  Aligned_cols=94  Identities=16%  Similarity=-0.000  Sum_probs=76.9

Q ss_pred             HHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHh
Q 007573          442 EHYTCLVDILSRAGQLEKAWQITQGMP--FEADTGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAA  519 (597)
Q Consensus       442 ~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~  519 (597)
                      ..|..+..+|.+.|++++|+..+++..  .+.+...|..++.++...|++++|+..++++++++|+++.+...+..+...
T Consensus        65 ~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~  144 (168)
T d1kt1a1          65 AAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKK  144 (168)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHH
T ss_pred             HHHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            356678888999999999999998876  344677999999999999999999999999999999999888888888777


Q ss_pred             cCCcH-HHHHHHHHHHh
Q 007573          520 AGMWR-DVTRVRLLMKE  535 (597)
Q Consensus       520 ~g~~~-~A~~~~~~~~~  535 (597)
                      .+... ...+++..|-+
T Consensus       145 ~~~~~e~~kk~~~~~f~  161 (168)
T d1kt1a1         145 AKEHNERDRRTYANMFK  161 (168)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHhHHHHHHHHHHHHHh
Confidence            66554 34555655543

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.24  E-value=3.3e-06  Score=70.02  Aligned_cols=64  Identities=9%  Similarity=-0.056  Sum_probs=57.2

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHhC
Q 007573          473 TGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRVRLLMKEQ  536 (597)
Q Consensus       473 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  536 (597)
                      ...|..+..++.+.|++++|+..+.++++++|+++.+|..++.+|...|++++|++.|++..+.
T Consensus        77 ~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l  140 (169)
T d1ihga1          77 LSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI  140 (169)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHh
Confidence            4467778888999999999999999999999999999999999999999999999999998874

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.18  E-value=0.0022  Score=58.25  Aligned_cols=135  Identities=10%  Similarity=0.070  Sum_probs=58.2

Q ss_pred             CCchhHHHHHHHHHhCCChhHHHHHHHhcccCCcchHHHHHHHHHcCCChHHHHHHHhhcCCCCCCchHHHHHHHHHHhc
Q 007573          172 RNVISYTAMLDGFMKKGEVDKARALSDYMSFKNVVSWTVMITGYVKNERFCEARELFYRMPDYDKNVFVVTAMITGFCKV  251 (597)
Q Consensus       172 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~  251 (597)
                      +|..--..+++.|.+.|.++.|..+|..+     .-|..++..+.+.++++.|.+.....    .+..+|..+...+.+.
T Consensus        12 ~n~~d~~~i~~~c~~~~lye~A~~lY~~~-----~d~~rl~~~~v~l~~~~~avd~~~k~----~~~~~~k~~~~~l~~~   82 (336)
T d1b89a_          12 PNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA----NSTRTWKEVCFACVDG   82 (336)
T ss_dssp             C----------------CTTTHHHHHHHT-----TCHHHHHHHHHTTTCHHHHHHHHHHH----TCHHHHHHHHHHHHHT
T ss_pred             CCcCCHHHHHHHHHHCCCHHHHHHHHHhC-----CCHHHHHHHHHhhccHHHHHHHHHHc----CCHHHHHHHHHHHHhC
Confidence            33333444555566666666666666533     33445555555666666666555543    2344555555555555


Q ss_pred             CCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhcc
Q 007573          252 GMLENARLLFERIQPKDCVSFNAMIAGYAQNGVAEEALRLFSGMIKMDMQPDDATLVSVFTACSAL  317 (597)
Q Consensus       252 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~  317 (597)
                      ....-|.-+ ......++.....++..|-..|.+++.+.++...... -.++...++.++..+++.
T Consensus        83 ~e~~la~i~-~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak~  146 (336)
T d1b89a_          83 KEFRLAQMC-GLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKF  146 (336)
T ss_dssp             TCHHHHHHT-TTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTT
T ss_pred             cHHHHHHHH-HHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHHHHHh
Confidence            444333221 1111123333445556666666666666666554322 133444444555555443

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.18  E-value=0.0011  Score=60.21  Aligned_cols=170  Identities=13%  Similarity=0.117  Sum_probs=101.1

Q ss_pred             CCcchHHHHHHHHHhcCChHHHHHHHhhcCCCCcchHHHHHHHHHhCCChhHHHHHHhhCCCCCcchHHHHHHHHHcCCC
Q 007573           48 QYVFVNNAKISALSRAGKISAARQLFDQMTTKDVITWNAIITGYWQNGFLQESKNLFQSMPVKNIVSWNCMIAGCIDNDR  127 (597)
Q Consensus        48 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~  127 (597)
                      ++..--..+.+.|.+.|.++.|..+|..+..     |..++..+.+.+++..|.+.+.+..  +..+|..+...|.+...
T Consensus        12 ~n~~d~~~i~~~c~~~~lye~A~~lY~~~~d-----~~rl~~~~v~l~~~~~avd~~~k~~--~~~~~k~~~~~l~~~~e   84 (336)
T d1b89a_          12 PNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN-----FGRLASTLVHLGEYQAAVDGARKAN--STRTWKEVCFACVDGKE   84 (336)
T ss_dssp             C----------------CTTTHHHHHHHTTC-----HHHHHHHHHTTTCHHHHHHHHHHHT--CHHHHHHHHHHHHHTTC
T ss_pred             CCcCCHHHHHHHHHHCCCHHHHHHHHHhCCC-----HHHHHHHHHhhccHHHHHHHHHHcC--CHHHHHHHHHHHHhCcH
Confidence            3333345567777888999999999987665     7788888888899999888887663  66788888888888776


Q ss_pred             hHHHHHHHccCCCCChhhHHHHHHHHHcCCChHHHHHHHccCC---CCCchhHHHHHHHHHhCCChhHHHHHHHhcccCC
Q 007573          128 IDDAFDYFQAMPERNTATYNAMISGFLKHGRLEEATRLFEQMP---RRNVISYTAMLDGFMKKGEVDKARALSDYMSFKN  204 (597)
Q Consensus       128 ~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~  204 (597)
                      ..-|.- .......++.....++..|-..|.+++...+++...   ..+...++.++..|++.+ .++..+.+...  .+
T Consensus        85 ~~la~i-~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak~~-~~kl~e~l~~~--s~  160 (336)
T d1b89a_          85 FRLAQM-CGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFK-PQKMREHLELF--WS  160 (336)
T ss_dssp             HHHHHH-TTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTC-HHHHHHHHHHH--ST
T ss_pred             HHHHHH-HHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCCccchHHHHHHHHHHHHhC-hHHHHHHHHhc--cc
Confidence            654422 222223344455678888888899998888888653   345667888888888765 34444444332  12


Q ss_pred             cchHHHHHHHHHcCCChHHHHHHH
Q 007573          205 VVSWTVMITGYVKNERFCEARELF  228 (597)
Q Consensus       205 ~~~~~~ll~~~~~~g~~~~a~~~~  228 (597)
                      ......++..|.+.+-++++.-++
T Consensus       161 ~y~~~k~~~~c~~~~l~~elv~Ly  184 (336)
T d1b89a_         161 RVNIPKVLRAAEQAHLWAELVFLY  184 (336)
T ss_dssp             TSCHHHHHHHHHTTTCHHHHHHHH
T ss_pred             cCCHHHHHHHHHHcCChHHHHHHH
Confidence            233333445555555444443333

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=98.17  E-value=2.1e-05  Score=64.78  Aligned_cols=63  Identities=10%  Similarity=-0.082  Sum_probs=58.3

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHhC
Q 007573          474 GVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRVRLLMKEQ  536 (597)
Q Consensus       474 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  536 (597)
                      .+|..+..+|...|++++|+..++++++++|++..++..++.+|...|++++|.+.++++.+.
T Consensus        65 ~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l  127 (168)
T d1kt1a1          65 AAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV  127 (168)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred             HHHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            356677788999999999999999999999999999999999999999999999999998864

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.14  E-value=7.1e-07  Score=88.50  Aligned_cols=147  Identities=11%  Similarity=0.002  Sum_probs=73.7

Q ss_pred             HHHHHHHHHHHHHCCCCCChHHHHHHHHHH--hccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHH
Q 007573          386 YEKALIFFSQMGLNGFDPDGITFLSLLSAC--GHAGKVNESMDLFELMVKVYGIIPS-SEHYTCLVDILSRAGQLEKAWQ  462 (597)
Q Consensus       386 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~--~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~  462 (597)
                      +..+++.++...+....++..-....+..+  ...+.++.+...+...   +++.|+ ...+..+...+.+.|+.++|..
T Consensus        65 y~~~ie~~r~~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~---~~l~~~~~~~~~~lg~~~~~~~~~~~A~~  141 (497)
T d1ya0a1          65 FKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTV---FNVDLPCRVKSSQLGIISNKQTHTSAIVK  141 (497)
T ss_dssp             THHHHHHHHHHHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC---------------------------------
T ss_pred             HHHHHHHHHHhcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HCCChhhHHHHHHhHHHHHhCCCHHHHHH
Confidence            445666666666544334432222221111  1223344444433322   234443 5566677777778888888777


Q ss_pred             HHhhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHhC
Q 007573          463 ITQGMPFEAD-TGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRVRLLMKEQ  536 (597)
Q Consensus       463 ~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  536 (597)
                      .++... .++ ..++..++..+...|++++|+..|+++++++|+++..|..||.++...|+..+|...|.+....
T Consensus       142 ~~~~al-~~~~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~  215 (497)
T d1ya0a1         142 PQSSSC-SYICQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAV  215 (497)
T ss_dssp             -CCHHH-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSS
T ss_pred             HHHHHh-CCCHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence            665433 222 2466777788888888888888888888888888888888888888888888888888877653

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.14  E-value=2.2e-05  Score=63.50  Aligned_cols=127  Identities=10%  Similarity=-0.055  Sum_probs=90.4

Q ss_pred             hhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHH
Q 007573          371 VSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDI  450 (597)
Q Consensus       371 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~  450 (597)
                      ..+......+.+.|++.+|+..|.+....-  |..           ..............        ....+|..+..+
T Consensus        18 ~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~--~~~-----------~~~~~~~~~~~~~~--------~~~~~~~Nla~~   76 (153)
T d2fbna1          18 FDIKEEGNEFFKKNEINEAIVKYKEALDFF--IHT-----------EEWDDQILLDKKKN--------IEISCNLNLATC   76 (153)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--TTC-----------TTCCCHHHHHHHHH--------HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--cch-----------hhhhhHHHHHhhhh--------HHHHHHhhHHHH
Confidence            345566677888889999988888877531  100           00000000000000        112467778899


Q ss_pred             HhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 007573          451 LSRAGQLEKAWQITQGMP-FEA-DTGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYA  518 (597)
Q Consensus       451 ~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~  518 (597)
                      |.+.|++++|++.+++.. ..| +..+|..++.++...|++++|+..|+++++++|+++.+...+..+..
T Consensus        77 ~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~  146 (153)
T d2fbna1          77 YNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVN  146 (153)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred             HHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            999999999999998865 445 67899999999999999999999999999999999887776665543

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.11  E-value=7.1e-06  Score=67.90  Aligned_cols=131  Identities=11%  Similarity=0.063  Sum_probs=93.1

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHH
Q 007573          373 WNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIP-SSEHYTCLVDIL  451 (597)
Q Consensus       373 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~  451 (597)
                      +......+...|++++|++.|+++.+.            ..............          .+.| ....|..+..+|
T Consensus        30 ~~~~~~~~~~~~~y~~Ai~~y~~al~~------------~~~~~~~~~~~~~~----------~~~~~~~~~~~nla~~~   87 (169)
T d1ihga1          30 LKNIGNTFFKSQNWEMAIKKYTKVLRY------------VEGSRAAAEDADGA----------KLQPVALSCVLNIGACK   87 (169)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH------------HHHHHHHSCHHHHG----------GGHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHh------------hhhhhhhhhhHHHH----------HhChhhHHHHHHHHHHH
Confidence            444556677788888888888776531            00000000000000          1122 355677888999


Q ss_pred             hhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcHH
Q 007573          452 SRAGQLEKAWQITQGMP-FEA-DTGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRD  525 (597)
Q Consensus       452 ~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~  525 (597)
                      .+.|++++|+..+++.. ..| +...|..++.++...|++++|+..|+++++++|+++.+...+..+..+.....+
T Consensus        88 ~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l~~~~~  163 (169)
T d1ihga1          88 LKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKD  163 (169)
T ss_dssp             HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             HhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Confidence            99999999999998865 455 567999999999999999999999999999999999888888877655444433

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=97.91  E-value=2.9e-05  Score=58.82  Aligned_cols=86  Identities=8%  Similarity=-0.070  Sum_probs=39.0

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCC
Q 007573          377 IAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQ  456 (597)
Q Consensus       377 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~  456 (597)
                      ...+.+.|++++|+..|++..... +-+..+|..+..++.+.|++++|...|+.+.+.  .+.+...+..+...|...|+
T Consensus        23 g~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~a~~~la~~y~~~g~   99 (112)
T d1hxia_          23 GLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARML--DPKDIAVHAALAVSHTNEHN   99 (112)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhHHHHHHHhhhcccc-cccchhhhhhhhhhhhhhhHHHhhccccccccc--ccccccchHHHHHHHHHCCC
Confidence            344445555555555555554431 112444444445555555555555555544432  11124444444444444444


Q ss_pred             HHHHHHHHh
Q 007573          457 LEKAWQITQ  465 (597)
Q Consensus       457 ~~~A~~~~~  465 (597)
                      +++|.+.++
T Consensus       100 ~~~A~~~l~  108 (112)
T d1hxia_         100 ANAALASLR  108 (112)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            444444443

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.89  E-value=3.6e-05  Score=63.85  Aligned_cols=113  Identities=9%  Similarity=-0.027  Sum_probs=80.8

Q ss_pred             HHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCH-HHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC
Q 007573          410 SLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQL-EKAWQITQGMPFEADTGVWGSLLAACVINLN  488 (597)
Q Consensus       410 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~  488 (597)
                      .........|++++|.+.|......+.-.+-..        +...... .++..+ +.    -....+..++..+...|+
T Consensus        16 ~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~--------~~~~~w~~~~r~~l-~~----~~~~a~~~la~~~~~~g~   82 (179)
T d2ff4a2          16 TAGVHAAAAGRFEQASRHLSAALREWRGPVLDD--------LRDFQFVEPFATAL-VE----DKVLAHTAKAEAEIACGR   82 (179)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGG--------GTTSTTHHHHHHHH-HH----HHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHhhCccccccc--------CcchHHHHHHHHHH-HH----HHHHHHHHHHHHHHHCCC
Confidence            334566788899999999888875422111000        0000001 111111 11    123567888899999999


Q ss_pred             HHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHh
Q 007573          489 VELGELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRVRLLMKE  535 (597)
Q Consensus       489 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  535 (597)
                      +++|+..++++++.+|.+...|..++.+|...|++++|++.|+++.+
T Consensus        83 ~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~  129 (179)
T d2ff4a2          83 ASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT  129 (179)
T ss_dssp             HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999854

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.87  E-value=2.2e-05  Score=62.69  Aligned_cols=74  Identities=12%  Similarity=0.062  Sum_probs=48.0

Q ss_pred             HHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcC-----------CHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcH
Q 007573          458 EKAWQITQGMP-FEA-DTGVWGSLLAACVINL-----------NVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGMWR  524 (597)
Q Consensus       458 ~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g-----------~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~  524 (597)
                      ++|++.|++.. +.| +..+|..++.+|...|           ++++|.+.|+++++++|++...+..|...       .
T Consensus        58 ~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~-------~  130 (145)
T d1zu2a1          58 QEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMT-------A  130 (145)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH-------H
T ss_pred             HHHHHHHHHHHHhcchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHH-------H
Confidence            44555554443 233 3445555555554433           46889999999999999988777666555       4


Q ss_pred             HHHHHHHHHHhCCC
Q 007573          525 DVTRVRLLMKEQGV  538 (597)
Q Consensus       525 ~A~~~~~~~~~~~~  538 (597)
                      +|.+++.++.+.|+
T Consensus       131 ka~~~~~e~~k~~~  144 (145)
T d1zu2a1         131 KAPQLHAEAYKQGL  144 (145)
T ss_dssp             THHHHHHHHHHSSS
T ss_pred             HHHHHHHHHHHHhc
Confidence            66777777766664

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=97.82  E-value=0.0015  Score=57.78  Aligned_cols=218  Identities=10%  Similarity=0.065  Sum_probs=91.2

Q ss_pred             HHHHHHHHHcCCChHHHHHHHhhcCCCCCCchHHHHHHHHHHh----cCCHHHHHHHHhhcCC-CChhHHHHHHHHHHH-
Q 007573          208 WTVMITGYVKNERFCEARELFYRMPDYDKNVFVVTAMITGFCK----VGMLENARLLFERIQP-KDCVSFNAMIAGYAQ-  281 (597)
Q Consensus       208 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~-  281 (597)
                      +..|...+...+++++|++.|+.+.+.. +...+..|..+|..    ..+...|...+..... .++.....+...+.. 
T Consensus         5 ~~~lG~~~~~~~d~~~A~~~~~kAa~~g-~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~~~~a~~~l~~~~~~~   83 (265)
T d1ouva_           5 LVGLGAKSYKEKDFTQAKKYFEKACDLK-ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGNLYYSG   83 (265)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccccccchhhccccccccc
Confidence            3344444444455555555555443321 23333334444433    3345555555544333 233334444333332 


Q ss_pred             ---cCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHH--hccchhHHHHHHHHHHHHhCCCCcccHHHHHHHHHHh----c
Q 007573          282 ---NGVAEEALRLFSGMIKMDMQPDDATLVSVFTAC--SALQLLNEGRQSHVLVIRNGFEANVSVCNAVITMYSR----C  352 (597)
Q Consensus       282 ---~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~  352 (597)
                         ..+.+.|...++.....|.......+ ......  ........+...+......+   +...+..|...|..    .
T Consensus        84 ~~~~~~~~~a~~~~~~a~~~g~~~a~~~l-~~~~~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~L~~~~~~~~~~~  159 (265)
T d1ouva_          84 QGVSQNTNKALQYYSKACDLKYAEGCASL-GGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTP  159 (265)
T ss_dssp             SSSCCCHHHHHHHHHHHHHTTCHHHHHHH-HHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSC
T ss_pred             cccchhhHHHHHHHhhhhhhhhhhHHHhh-cccccCCCcccchhHHHHHHhhhhhccc---ccchhhhhhhhhccCCCcc
Confidence               23455566666655554422111111 111111  11223333444443333322   23334444444443    2


Q ss_pred             CCHHHHHHHHhccC-CCChhhHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhc----cCcHHH
Q 007573          353 GGILDSELAFRQIH-SPNLVSWNTIIAAFAQ----HGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGH----AGKVNE  423 (597)
Q Consensus       353 g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~g~~~~  423 (597)
                      .+...+...++... ..+..+...+...|..    ..++++|+.+|++..+.|   ++..+..|...+.+    ..+.++
T Consensus       160 ~~~~~~~~~~~~a~~~g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~LG~~y~~G~g~~~n~~~  236 (265)
T d1ouva_         160 KDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAMQYNGEGVTRNEKQ  236 (265)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTSSSSCCSTT
T ss_pred             cccccchhhhhccccccccccccchhhhcccCcccccchhhhhhhHhhhhccc---CHHHHHHHHHHHHcCCCCccCHHH
Confidence            23444444444333 2344444444444443    345666666666665554   23333344444432    224555


Q ss_pred             HHHHHHHhHH
Q 007573          424 SMDLFELMVK  433 (597)
Q Consensus       424 a~~~~~~~~~  433 (597)
                      |.+.|++...
T Consensus       237 A~~~~~kAa~  246 (265)
T d1ouva_         237 AIENFKKGCK  246 (265)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            6666555544

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.76  E-value=1.1e-05  Score=64.49  Aligned_cols=85  Identities=11%  Similarity=0.046  Sum_probs=59.1

Q ss_pred             hcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHH----------hcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhc
Q 007573          453 RAGQLEKAWQITQGMP-FEA-DTGVWGSLLAACV----------INLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAA  520 (597)
Q Consensus       453 ~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~----------~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~  520 (597)
                      +.+.+++|.+.++... ..| ++.++..++.++.          ..+.+++|+..++++++++|+++.+|..++.+|...
T Consensus         9 r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~~   88 (145)
T d1zu2a1           9 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF   88 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHHHHc
Confidence            3444555555555443 223 3445555554443          234568999999999999999999999999999887


Q ss_pred             CC-----------cHHHHHHHHHHHhCC
Q 007573          521 GM-----------WRDVTRVRLLMKEQG  537 (597)
Q Consensus       521 g~-----------~~~A~~~~~~~~~~~  537 (597)
                      |+           +++|.+.|++..+..
T Consensus        89 g~~~~~~~~~~~~~~~A~~~~~kal~l~  116 (145)
T d1zu2a1          89 AFLTPDETEAKHNFDLATQFFQQAVDEQ  116 (145)
T ss_dssp             HHHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             ccchhhHHHHHHhHHHhhhhhhcccccC
Confidence            64           678888888877643

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.76  E-value=4.8e-05  Score=55.53  Aligned_cols=74  Identities=18%  Similarity=0.067  Sum_probs=55.9

Q ss_pred             HHHHHHHHHhhcCCHHHHHHHHhhCC--------CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHH
Q 007573          443 HYTCLVDILSRAGQLEKAWQITQGMP--------FEAD-TGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVML  513 (597)
Q Consensus       443 ~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l  513 (597)
                      .+-.++..+.+.|++++|...|++..        ..++ ..++..|..++.+.|++++|+..++++++++|+++.++..+
T Consensus         7 dc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~Nl   86 (95)
T d1tjca_           7 DSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNL   86 (95)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHHHH
Confidence            33456666677777777766665542        1223 45788899999999999999999999999999998888777


Q ss_pred             HHH
Q 007573          514 SNL  516 (597)
Q Consensus       514 ~~~  516 (597)
                      ...
T Consensus        87 ~~~   89 (95)
T d1tjca_          87 KYF   89 (95)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            554

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.75  E-value=0.00015  Score=56.33  Aligned_cols=58  Identities=10%  Similarity=0.091  Sum_probs=30.9

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHH
Q 007573          375 TIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMVK  433 (597)
Q Consensus       375 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~  433 (597)
                      .+...+.+.|++++|++.|++.++.. +.+...+..+..++.+.|++++|.+.++.+++
T Consensus         9 ~~G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~   66 (128)
T d1elra_           9 ELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIE   66 (128)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHHH
Confidence            34445555566666666665555432 22344555555555555555555555555543

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=97.74  E-value=6e-05  Score=61.08  Aligned_cols=89  Identities=11%  Similarity=-0.099  Sum_probs=64.6

Q ss_pred             HHHHhhcCCHHHHHHHHhhCC----CCC----------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-------
Q 007573          448 VDILSRAGQLEKAWQITQGMP----FEA----------DTGVWGSLLAACVINLNVELGELAAKKMRELDPQN-------  506 (597)
Q Consensus       448 ~~~~~~~g~~~~A~~~~~~~~----~~p----------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~-------  506 (597)
                      +..+.+.|++++|++.|++..    .-|          ....|+.+..++...|++++|...+++++++.|..       
T Consensus        16 g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~   95 (156)
T d2hr2a1          16 AQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDE   95 (156)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccc
Confidence            334445566666666655442    111          13567888888999999999999999998764321       


Q ss_pred             ----CchHHHHHHHHHhcCCcHHHHHHHHHHHhC
Q 007573          507 ----SAVYVMLSNLYAAAGMWRDVTRVRLLMKEQ  536 (597)
Q Consensus       507 ----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  536 (597)
                          ..++..++.+|...|++++|++.|++..+.
T Consensus        96 ~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l  129 (156)
T d2hr2a1          96 GKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM  129 (156)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             cchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence                235788999999999999999999998763

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.69  E-value=0.00011  Score=53.40  Aligned_cols=65  Identities=12%  Similarity=-0.093  Sum_probs=55.5

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-------CchHHHHHHHHHhcCCcHHHHHHHHHHHhCC
Q 007573          473 TGVWGSLLAACVINLNVELGELAAKKMRELDPQN-------SAVYVMLSNLYAAAGMWRDVTRVRLLMKEQG  537 (597)
Q Consensus       473 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  537 (597)
                      ...+-.++..+.+.|++++|+..+++++++.|.+       ..++..++.+|.+.|++++|++.++++.+..
T Consensus         5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~   76 (95)
T d1tjca_           5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD   76 (95)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhC
Confidence            3445578888999999999999999999876543       3568899999999999999999999998743

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.63  E-value=1.2e-05  Score=79.42  Aligned_cols=103  Identities=8%  Similarity=-0.057  Sum_probs=42.4

Q ss_pred             HHHHHHhccchhHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCHHHHHHHHhccC---CCChhhHHHHHHHHHHcCC
Q 007573          309 SVFTACSALQLLNEGRQSHVLVIRNGFEANVSVCNAVITMYSRCGGILDSELAFRQIH---SPNLVSWNTIIAAFAQHGH  385 (597)
Q Consensus       309 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~  385 (597)
                      .+...+...|+.+.|...+....+..   ....+..+.+.+...|++++|+..|++..   +.+..+|+.+...+...|+
T Consensus       125 ~lg~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~  201 (497)
T d1ya0a1         125 QLGIISNKQTHTSAIVKPQSSSCSYI---CQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGD  201 (497)
T ss_dssp             ------------------CCHHHHHH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTC
T ss_pred             HhHHHHHhCCCHHHHHHHHHHHhCCC---HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcCC
Confidence            33334444455555544443333221   11234445555555556666655555544   3334455555555555566


Q ss_pred             HHHHHHHHHHHHHCCCCCChHHHHHHHHHH
Q 007573          386 YEKALIFFSQMGLNGFDPDGITFLSLLSAC  415 (597)
Q Consensus       386 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~  415 (597)
                      ..+|+..|.+..... +|-..++..|...+
T Consensus       202 ~~~A~~~y~ral~~~-~~~~~a~~nL~~~~  230 (497)
T d1ya0a1         202 HLTTIFYYCRSIAVK-FPFPAASTNLQKAL  230 (497)
T ss_dssp             HHHHHHHHHHHHSSS-BCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCC-CCCHHHHHHHHHHH
Confidence            666665555555432 34444555554443

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=97.50  E-value=0.00016  Score=63.85  Aligned_cols=126  Identities=13%  Similarity=0.045  Sum_probs=87.3

Q ss_pred             HHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHH
Q 007573          380 FAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPS-SEHYTCLVDILSRAGQLE  458 (597)
Q Consensus       380 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~  458 (597)
                      ..+.|++++|+..+++.++.. +-|...+..+...++..|++++|.+.++...+.   .|+ ...+..+..++...+..+
T Consensus         6 aL~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l---~P~~~~~~~~l~~ll~a~~~~~   81 (264)
T d1zbpa1           6 ALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL---FPEYLPGASQLRHLVKAAQARK   81 (264)
T ss_dssp             HTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHhccccH
Confidence            345789999999999988763 445678888889999999999999999988754   455 445555555655555555


Q ss_pred             HHHHHHhhC--CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch
Q 007573          459 KAWQITQGM--PFEADT-GVWGSLLAACVINLNVELGELAAKKMRELDPQNSAV  509 (597)
Q Consensus       459 ~A~~~~~~~--~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~  509 (597)
                      ++..-....  ..+|+. ..+......+...|+.++|...++++.+..|..+..
T Consensus        82 ~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~~  135 (264)
T d1zbpa1          82 DFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFL  135 (264)
T ss_dssp             HHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEE
T ss_pred             HHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCcc
Confidence            544332221  123332 234444556778899999999999999988887554

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=97.46  E-value=0.052  Score=51.73  Aligned_cols=54  Identities=9%  Similarity=-0.024  Sum_probs=26.9

Q ss_pred             HHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChhHHHHHHHHhHHCC
Q 007573          245 ITGFCKVGMLENARLLFERIQPKDCVSFNAMIAGYAQNGVAEEALRLFSGMIKMD  299 (597)
Q Consensus       245 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g  299 (597)
                      +..+.+.++++.....+..- +.+...-.....+....|+.++|...+..+-..|
T Consensus        79 l~~L~~~~~w~~~~~~~~~~-p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~  132 (450)
T d1qsaa1          79 VNELARREDWRGLLAFSPEK-PGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG  132 (450)
T ss_dssp             HHHHHHTTCHHHHHHHCCSC-CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS
T ss_pred             HHHHHhccCHHHHHHhccCC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Confidence            44455555555544433321 1233334445555566666666666555554443

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.41  E-value=0.00067  Score=55.86  Aligned_cols=66  Identities=15%  Similarity=0.195  Sum_probs=39.5

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChhHHHHHHHHhHH-----CCCCCCHH
Q 007573          240 VVTAMITGFCKVGMLENARLLFERIQ---PKDCVSFNAMIAGYAQNGVAEEALRLFSGMIK-----MDMQPDDA  305 (597)
Q Consensus       240 ~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~  305 (597)
                      .+..++..+.+.|++++|+..++++.   +.+...|..++.+|.+.|+.++|++.|+++.+     .|+.|...
T Consensus        69 a~~~la~~~~~~g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~  142 (179)
T d2ff4a2          69 AHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT  142 (179)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred             HHHHHHHHHHHCCCchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHH
Confidence            34455666666666666666666543   23555666666666666666666666666532     35555543

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=97.40  E-value=0.00055  Score=55.11  Aligned_cols=64  Identities=14%  Similarity=-0.048  Sum_probs=43.9

Q ss_pred             HHHHHHHHHhhcCCHHHHHHHHhhCC--------CCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 007573          443 HYTCLVDILSRAGQLEKAWQITQGMP--------FEAD-----TGVWGSLLAACVINLNVELGELAAKKMRELDPQN  506 (597)
Q Consensus       443 ~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~p~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~  506 (597)
                      .|+.+..+|...|++++|.+.+++..        ..++     ...+..++.+|...|++++|+..|++++++.|..
T Consensus        57 ~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~  133 (156)
T d2hr2a1          57 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEER  133 (156)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHh
Confidence            45556666666666666665554432        1122     2256778889999999999999999999886654

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=97.15  E-value=0.00025  Score=62.66  Aligned_cols=121  Identities=12%  Similarity=0.097  Sum_probs=86.0

Q ss_pred             HhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHhhCC-CCCC-HHHHHHHHHHHHhcCCHHHH
Q 007573          415 CGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEKAWQITQGMP-FEAD-TGVWGSLLAACVINLNVELG  492 (597)
Q Consensus       415 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~g~~~~a  492 (597)
                      ..+.|++++|...+++.++.  -+-+...+..++..|+..|++++|.+.++... ..|+ ...+..+...+...+..+++
T Consensus         6 aL~~G~l~eAl~~l~~al~~--~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a   83 (264)
T d1zbpa1           6 ALSEGQLQQALELLIEAIKA--SPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDF   83 (264)
T ss_dssp             HTTTTCHHHHHHHHHHHHHT--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHHH
Confidence            35679999999999999874  34458899999999999999999999999876 5665 44555555555444333333


Q ss_pred             HHHHHHHHhc-CCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHhCC
Q 007573          493 ELAAKKMREL-DPQNSAVYVMLSNLYAAAGMWRDVTRVRLLMKEQG  537 (597)
Q Consensus       493 ~~~~~~~~~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  537 (597)
                      .......... +|++...+...+..+...|+.++|.+.++++.+..
T Consensus        84 ~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~  129 (264)
T d1zbpa1          84 AQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELR  129 (264)
T ss_dssp             TTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred             HHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Confidence            2222211112 23334555667888999999999999999988754

>d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Hypothetical protein ST1625
family: Hypothetical protein ST1625
domain: Hypothetical protein ST1625
species: Archaeon Sulfolobus tokodaii [TaxId: 111955]

Probab=96.33  E-value=0.11  Score=37.91  Aligned_cols=141  Identities=10%  Similarity=0.073  Sum_probs=99.2

Q ss_pred             HHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHH
Q 007573          380 FAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSRAGQLEK  459 (597)
Q Consensus       380 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~  459 (597)
                      +...|..++..+++.+...   ..+..-|+.++--....-+-+-..++++.+-+.+.+.              .++++..
T Consensus        12 ~ildG~ve~Gveii~k~~~---ss~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDls--------------~C~Nlk~   74 (161)
T d1wy6a1          12 FLLDGYIDEGVKIVLEITK---SSTKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLD--------------KCQNLKS   74 (161)
T ss_dssp             HHHTTCHHHHHHHHHHHHH---HSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGG--------------GCSCTHH
T ss_pred             HHHhhhHHhHHHHHHHHcc---cCCccccceeeeecccccchHHHHHHHHHHhhhcCch--------------hhhcHHH
Confidence            4456888888888888775   3345556666666666666666677777665433222              2333333


Q ss_pred             HHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHhCCCc
Q 007573          460 AWQITQGMPFEADTGVWGSLLAACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRVRLLMKEQGVT  539 (597)
Q Consensus       460 A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  539 (597)
                      ....+-.+.  .+...++.-+.....+|.-++-.+++..+++.+..+|.....++.+|.+.|...++-+++.+.-++|++
T Consensus        75 vv~C~~~~n--~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~K  152 (161)
T d1wy6a1          75 VVECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK  152 (161)
T ss_dssp             HHHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhHH
Confidence            333333332  344556667778888999999999999988877777888999999999999999999999999999874

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.07  E-value=0.025  Score=41.97  Aligned_cols=47  Identities=13%  Similarity=0.003  Sum_probs=25.7

Q ss_pred             HHHHHHHHHHHHhcCCCC-CchHHHHHHHHHhcCCcHHHHHHHHHHHh
Q 007573          489 VELGELAAKKMRELDPQN-SAVYVMLSNLYAAAGMWRDVTRVRLLMKE  535 (597)
Q Consensus       489 ~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  535 (597)
                      .++|+.+++++++.+|.+ ...+..|+-+|.+.|++++|.+.++.+.+
T Consensus        54 ~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~  101 (124)
T d2pqrb1          54 ERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE  101 (124)
T ss_dssp             HHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence            345555555555555544 24445555555555555555555555554

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=95.80  E-value=0.79  Score=43.05  Aligned_cols=51  Identities=4%  Similarity=-0.091  Sum_probs=35.3

Q ss_pred             HHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCcHHHHHHHHHH
Q 007573          481 AACVINLNVELGELAAKKMRELDPQNSAVYVMLSNLYAAAGMWRDVTRVRLLM  533 (597)
Q Consensus       481 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  533 (597)
                      ..+...|....|...+..+.+..  ++.-...++..-.+.|.++.|+....+.
T Consensus       389 ~~L~~~g~~~~A~~e~~~l~~~~--~~~~~~~la~lA~~~g~~~~aI~a~~~~  439 (450)
T d1qsaa1         389 RELMYWNLDNTARSEWANLVKSK--SKTEQAQLARYAFNNQWWDLSVQATIAG  439 (450)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHTTC--CHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred             HHHHHcCCchHHHHHHHHHHhCC--CHHHHHHHHHHHHHCCChhHHHHHHHHH
Confidence            34567788888888777776432  3445667777788888888887766554

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=95.37  E-value=0.11  Score=39.42  Aligned_cols=50  Identities=10%  Similarity=-0.036  Sum_probs=33.6

Q ss_pred             CCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHh----cCCcHHHHHHHHHHHhCCC
Q 007573          487 LNVELGELAAKKMRELDPQNSAVYVMLSNLYAA----AGMWRDVTRVRLLMKEQGV  538 (597)
Q Consensus       487 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~  538 (597)
                      .|.++|.+.++++.+.+  ++.....|+..|..    ..+.++|.+++++..+.|.
T Consensus        73 ~d~~~A~~~~~~aa~~g--~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~  126 (133)
T d1klxa_          73 KDLRKAAQYYSKACGLN--DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS  126 (133)
T ss_dssp             CCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred             hhhHHHHHHHhhhhccC--cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCC
Confidence            46677777777776654  35556677777766    3467777788777776653

>d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Hypothetical protein ST1625
family: Hypothetical protein ST1625
domain: Hypothetical protein ST1625
species: Archaeon Sulfolobus tokodaii [TaxId: 111955]

Probab=95.32  E-value=0.33  Score=35.42  Aligned_cols=67  Identities=13%  Similarity=0.097  Sum_probs=50.9

Q ss_pred             ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCC
Q 007573          369 NLVSWNTIIAAFAQHGHYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMVKVYGI  437 (597)
Q Consensus       369 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~  437 (597)
                      +....+..++.+...|+-++-.++++.+.+.+ +|++.....+..+|.+.|...++.+++.++.+. |+
T Consensus        85 ~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe~-G~  151 (161)
T d1wy6a1          85 LNEHVNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKK-GE  151 (161)
T ss_dssp             CCHHHHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TC
T ss_pred             hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHH-hH
Confidence            34445556677788888888888888876644 788888888888898899988888888888775 54

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=94.99  E-value=0.23  Score=37.54  Aligned_cols=112  Identities=16%  Similarity=0.037  Sum_probs=76.9

Q ss_pred             CHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhh----cCCHHHH
Q 007573          385 HYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVDILSR----AGQLEKA  460 (597)
Q Consensus       385 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A  460 (597)
                      ++++|+++|++..+.| .+..  ...+.  .....+.++|.+.+++..+. |   ++.....|...|..    ..+.++|
T Consensus         8 d~~~A~~~~~kaa~~g-~~~a--~~~l~--~~~~~~~~~a~~~~~~aa~~-g---~~~a~~~Lg~~y~~g~~~~~d~~~A   78 (133)
T d1klxa_           8 DLKKAIQYYVKACELN-EMFG--CLSLV--SNSQINKQKLFQYLSKACEL-N---SGNGCRFLGDFYENGKYVKKDLRKA   78 (133)
T ss_dssp             HHHHHHHHHHHHHHTT-CTTH--HHHHH--TCTTSCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred             CHHHHHHHHHHHHHCC-Chhh--hhhhc--cccccCHHHHHHHHhhhhcc-c---chhhhhhHHHhhhhccccchhhHHH
Confidence            6788888888888776 3322  22222  33456788888888887664 3   45556666666654    4578899


Q ss_pred             HHHHhhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCC
Q 007573          461 WQITQGMPFEADTGVWGSLLAACVI----NLNVELGELAAKKMRELDPQ  505 (597)
Q Consensus       461 ~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p~  505 (597)
                      .++|++....-++.....|...|..    ..|.++|...++++.+.+..
T Consensus        79 ~~~~~~aa~~g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~~  127 (133)
T d1klxa_          79 AQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSE  127 (133)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHhhhhccCcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCCH
Confidence            9999886534456666667666654    46899999999999887654

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.88  E-value=0.32  Score=35.80  Aligned_cols=71  Identities=10%  Similarity=-0.034  Sum_probs=48.1

Q ss_pred             CChHHHHHHHHHHhhcC---CHHHHHHHHhhCC-CCC-CH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch
Q 007573          439 PSSEHYTCLVDILSRAG---QLEKAWQITQGMP-FEA-DT-GVWGSLLAACVINLNVELGELAAKKMRELDPQNSAV  509 (597)
Q Consensus       439 p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~-~~p-~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~  509 (597)
                      |+..+--..+.++.+..   +.++++.+++++. ..| +. ..+-.|.-+|.+.|++++|.+.++++++++|++..+
T Consensus        33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA  109 (124)
T d2pqrb1          33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV  109 (124)
T ss_dssp             SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHH
Confidence            33444444555555443   3446666666654 233 32 466778888999999999999999999999998654

>d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Cytochrome c oxidase subunit E
family: Cytochrome c oxidase subunit E
domain: Cytochrome c oxidase subunit E
species: Cow (Bos taurus) [TaxId: 9913]

Probab=86.19  E-value=2.2  Score=29.35  Aligned_cols=63  Identities=13%  Similarity=0.149  Sum_probs=47.2

Q ss_pred             CHHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHH
Q 007573          385 HYEKALIFFSQMGLNGFDPDGITFLSLLSACGHAGKVNESMDLFELMVKVYGIIPSSEHYTCLVD  449 (597)
Q Consensus       385 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~  449 (597)
                      +.-++.+-++.+....+-|++....+.+.+|.+.+++..|.++++.+..+  ..++...|..++.
T Consensus        21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K--~~~~k~~y~yilq   83 (105)
T d1v54e_          21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK--AGPHKEIYPYVIQ   83 (105)
T ss_dssp             CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTTCTTHHHHHHH
T ss_pred             cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--hcCcHHHHHHHHH
Confidence            34456666777777778899999999999999999999999999888654  3334556666553