Citrus Sinensis ID: 007621

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-----
Protein Sequence
MLLSLNRKRVSGVSQMITQINHFLVFFPVSNEKTSIMQKQNAFFIPVRVRSFCSSRLTHQPKVSLAESTQPPASLVASRVSRLARTEAQEVLFDYLHSTRSLGYMDAEHISKNSPDFVLNLLSKIDSGKDVTRSLMRFLRYNPINEFEPFFESLGLSQSELSPLLPRHLMFLSDDEVLLDNFHVLCDYGIPRSKMGKMYVEATEIFRHDRGVLASKLWAYENLGLSKNTVIKLVSCCPSLLIGGVDSRFVKVLEKLKELGFKNDWIGRYLPGKGSYNWDQVSETLDFLYKIGYNEVQLLNLFKTNPALVFEGSGQKVYVLFGRLLKLGLKMNEVYSLFSQNPQILSSKFVKNLLQAVGFLIEIGMGMKDISNMVLMHAELMGSCSLKGPKTVCSKLKVGRESLCQIIKDDPLKLFHLASKTEVKIDEQVDCQNPSKDVEKTEFLLRLGYVENSEEVTKALKQFRGRGDQLQERFDCLVQAGLDSNVVRNIVKRAPMVLNQSKDVLEKKIDYLKNYLCYPLESVVAFPAYLCYDMGRINHRCKMYVWLRERGVAKPTLSLSTILACSDAKFEKYFVDVHPEGPAMWESLKKSSNSS
Secondary Structure (PSIPRED)
cccccccHHHHHHHHHHHHHcccEEEcccccccccHHHHHccccccccccccccccccccccccccccccccccHHHHHHcHHHHHHHHHHHHHHHHHHcccccccHHHHHHHcHHHHHHHHHHccccHHHHHHHHHHHccccccccHHHHHHcccccccccccccccccccccHHHHHHHHHHHHcccccccHHHHHHHHccccccccHHHHHHHHHHHHHccccHHHHHHHHHHccccccccccHHHHHHHHHHHHcccccHHHHHcccccccccHHcHHHHHHHHHHccccHHHHHHHHHHccccccccccccHHHHHHHHHHccccHHHHHHHHHHcccccccHHHHcHHHHHHHHHHHcccHHHHHHHHHHcccccccccccccHHHHHHccccHHHHHHHHHcccccccccccHHHHHHHHHHccccccccHHHHHHHHHHcccccHHHHHHHHHHHcccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccccHHHHHHcccccccccHHHHHHHHHHHHHHHccccccccccHHHHcccHHHHHHHcccccccHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHHHHHHEEEEccccccccccHccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHcccHHHHHHHHHHccccccHHHHHHHHHHHccccccHHHHHHccccccccccccccccEEEcccHHHHHHHHHHHHccccHHHHHHHHHccHHHHcccHHHHHHHHHHHHHccccHHHHHHHHHHcccEEccccHHHHHHHHHHHHHccccHHHHHHHHHHHccccHHHHHHHHHHHHHccccHHHHHHHHHHcccEEEcccccccHHHHHHHHHccccHHHHHHHHHHcHHHHHHcHHHHcHHHHHHHHHHcccHHHHHHHHHHccccccccccccHHHHHHHccccHHHHHHHHHHccHHHEEEccccccccccccccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHcccHHHHHHHHHHHHccccHHHHHHHHHHccHHHHccHHHHHHHHHHHHHHccccHHHHHHccHEEEccHHHHHHHHHHHHHHHHcccccccccHHHHHcccHHHHHHHHHHHcHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
mllslnrkrvsGVSQMITQINHFLvffpvsnektsiMQKQNAFFIPVRVRSfcssrlthqpkvslaestqppasLVASRVSRLARTEAQEVLFDYLHSTRslgymdaehisknspDFVLNLLSKIDSGKDVTRSLMRFLrynpinefepffeslglsqselspllprhlmflsddevLLDNFHVLcdygiprskmgkMYVEATEIFRHDRGVLASKLWAYENLGLSKNTVIKLVSccpslliggvdSRFVKVLEKLKElgfkndwigrylpgkgsynwdqVSETLDFLYKIGYNEVQLLNlfktnpalvfegsgQKVYVLFGRLLKLGLKMNEVYslfsqnpqilSSKFVKNLLQAVGFLIEIGMGMKDISNMVLMHAELmgscslkgpktvcsKLKVGRESLCQiikddplklfhlasktevkideqvdcqnpskdvekTEFLLRLGYVENSEEVTKALKQFRGRGDQLQERFDCLVQAGLDSNVVRNIVKRAPMVLNQSKDVLEKKIDYLKNylcyplesvvafpayLCYDMGRINHRCKMYVWLRergvakptlslSTILACSDAKFEKYFvdvhpegpamWESLKKSSNSS
Flexible Loop (DISEMBL)
mllslnrkrvsgVSQMITQINHFLVFFPVSNEKTSIMQKQNAFFIPVRVRSFCSSRLTHQpkvslaestqppasLVASRVSRLARTEAQEVLFDYLHSTRSLGYMDAEHISKNSPDFVLNLLSKIDSGKDVTRSLMRFLRYNPINEFEPFFESLGLSQSELSPLLPRHLMFLSDDEVLLDNFHVLCDYGIPRSKMGKMYVEATEIFRHDRGVLASKLWAYENLGLSKNTVIKLVSCCPSLLIGGVDSRFVKVLEKLKelgfkndwigrylpGKGSYNWDQVSETLDFLYKIGYNEVQLLNLFKTNPALVFEGSGQKVYVLFGRLLKLGLKMNEVYSLFSQNPQILSSKFVKNLLQAVGFLIEIGMGMKDISNMVLMHAELMGSCSLKGPKTVCSKLKVGRESLCQIIKDDPLKLFHLASKTevkideqvdcqnpskdveKTEFLLRLGYVENSEEVTKALKQFRGRGDQLQERFDCLVqagldsnvvrnivkrapmvlnqskdVLEKKIDYLKNYLCYPLESVVAFPAYLCYDMGRINHRCKMYVWLRERGVAKPTLSLSTILACSDAKFEKYFVDVHPEGPamweslkkssnss
Low Complexity Region (SEG)
MLLSLNRKRVSGVSQMITQINHFLVFFPVSNEKTSIMQKQNAFFIPVRVRSFCSSRLTHQPKVSLAESTQPPASLVASRVSRLARTEAQEVLFDYLHSTRSLGYMDAEHISKNSPDFVLNLLSKIDSGKDVTRSLMRFLRYNPINEFEPFFESLGLSQSELSPLLPRHLMFLSDDEVLLDNFHVLCDYGIPRSKMGKMYVEATEIFRHDRGVLASKLWAYENLGLSKNTVIKLVSCCPSLLIGGVDSRFVKVLEKLKELGFKNDWIGRYLPGKGSYNWDQVSETLDFLYKIGYNEVQLLNLFKTNPALVFEGSGQKVYVLFGRLLKLGLKMNEVYSLFSQNPQILSSKFVKNLLQAVGFLIEIGMGMKDISNMVLMHAELMGSCSLKGPKTVCSKLKVGRESLCQIIKDDPLKLFHLASKTEVKIDEQVDCQNPSKDVEKTEFLLRLGYVENSEEVTKALKQFRGRGDQLQERFDCLVQAGLDSNVVRNIVKRAPMVLNQSKDVLEKKIDYLKNYLCYPLESVVAFPAYLCYDMGRINHRCKMYVWLRERGVAKPTLSLSTILACSDAKFEKYFVDVHPEGPAMWESLKKSSNSS
Disordered region (IsUnstruct)
***********GVSQMITQINHFLVFFPVSNEKTSIMQKQNAFFIPVRVRSFCSSR****************************RTEAQEVLFDYLHSTRSLGYMDAEHISKNSPDFVLNLLSKIDSGKDVTRSLMRFLRYNPINEFEPFFESLGLSQSELSPLLPRHLMFLSDDEVLLDNFHVLCDYGIPRSKMGKMYVEATEIFRHDRGVLASKLWAYENLGLSKNTVIKLVSCCPSLLIGGVDSRFVKVLEKLKELGFKNDWIGRYLPGKGSYNWDQVSETLDFLYKIGYNEVQLLNLFKTNPALVFEGSGQKVYVLFGRLLKLGLKMNEVYSLFSQNPQILSSKFVKNLLQAVGFLIEIGMGMKDISNMVLMHAELMGSCSLKGPKTVCSKLKVGRESLCQIIKDDPLKLFHLASKTEVKIDEQVDC******VEKTEFLLRLGYVENSEEVTKALKQFRGRGDQLQERFDCLVQAGLDSNVVRNIVKRAPMVLNQSKDVLEKKIDYLKNYLCYPLESVVAFPAYLCYDMGRINHRCKMYVWLRERGVAKPTLSLSTILACSDAKFEKYFVDVHP****************
Disordered Region (DISOPRED)
*************SQMITQINHFLVFFPVSNEKTS*MQKQNAFFIPVRVRSFCSS******************************TEAQEVLFDYLHSTRSLGYMDAEHISKNSPDFVLNLLSKIDSGKDVTRSLMRFLRYNPINEFEPFFESLGLSQSELSPLLPRHLMFLSDDEVLLDNFHVLCDYGIPRSKMGKMYVEATEIFRHDRGVLASKLWAYENLGLSKNTVIKLVSCCPSLLIGGVDSRFVKVLEKLKELGFKNDWIGRYLPGKGSYNWDQVSETLDFLYKIGYNEVQLLNLFKTNPALVFEGSGQKVYVLFGRLLKLGLKMNEVYSLFSQNPQILSSKFVKNLLQAVGFLIEIGMGMKDISNMVLMHAELMGSCSLKGPKTVCSKLKVGRESLCQIIKDDPLKLFHLASKTEVKIDEQVDCQNPSKDVEKTEFLLRLGYVENSEEVTKALKQFRGRGDQLQERFDCLVQAGLDSNVVRNIVKRAPMVLNQSKDVLEKKIDYLKNYLCYPLESVVAFPAYLCYDMGRINHRCKMYVWLRERGVAKPTLSLSTILACSDAKFEKYFVDVHPEGPAMWE**KK*****
Disordered Region (DISEMBL)
MLLSLNRKRVSGVSQMITQINHFLVFFPVSNEKTSIMQKQNAFFIPVRVRSFCSSRLTHQPKVSLAESTQPPASLVASRVSRLARTEAQEVLFDYLHSTRSLGYMDAEHISKNSPDFVLNLLSKIDSGKDVTRSLMRFLRYNPINEFEPFFESLGLSQSELSPLLPRHLMFLSDDEVLLDNFHVLCDYGIPRSKMGKMYVEATEIFRHDRGVLASKLWAYENLGLSKNTVIKLVSCCPSLLIGGVDSRFVKVLEKLKELGFKNDWIGRYLPGKGSYNWDQVSETLDFLYKIGYNEVQLLNLFKTNPALVFEGSGQKVYVLFGRLLKLGLKMNEVYSLFSQNPQILSSKFVKNLLQAVGFLIEIGMGMKDISNMVLMHAELMGSCSLKGPKTVCSKLKVGRESLCQIIKDDPLKLFHLASKTEVKIDEQVDCQNPSKDVEKTEFLLRLGYVENSEEVTKALKQFRGRGDQLQERFDCLVQAGLDSNVVRNIVKRAPMVLNQSKDVLEKKIDYLKNYLCYPLESVVAFPAYLCYDMGRINHRCKMYVWLRERGVAKPTLSLSTILACSDAKFEKYFVDVHPEGPAMWE*********
Disordered Region (DISPRO)
*LLSLNRKRVSGVSQMITQINHFLVFFPVSNEKTSIMQKQNAFFIPVRVRSFCSSRLT**************ASLVASRVSRLARTEAQEVLFDYLHSTRSLGYMDAEHISKNSPDFVLNLLSKIDSGKDVTRSLMRFLRYNPINEFEPFFESLGLSQSELSPLLPRHLMFLSDDEVLLDNFHVLCDYGIPRSKMGKMYVEATEIFRHDRGVLASKLWAYENLGLSKNTVIKLVSCCPSLLIGGVDSRFVKVLEKLKELGFKNDWIGRYLPGKGSYNWDQVSETLDFLYKIGYNEVQLLNLFKTNPALVFEGSGQKVYVLFGRLLKLGLKMNEVYSLFSQNPQILSSKFVKNLLQAVGFLIEIGMGMKDISNMVLMHAELMGSCSLKGPKTVCSKLKVGRESLCQIIKDDPLKLFHLASKTEVKIDEQVDCQNPSKDVEKTEFLLRLGYVENSEEVTKALKQFRGRGDQLQERFDCLVQAGLDSNVVRNIVKRAPMVLNQSKDVLEKKIDYLKNYLCYPLESVVAFPAYLCYDMGRINHRCKMYVWLRERGVAKPTLSLSTILACSDAKFEKYFVDVHPEGPAMWESLKKSS***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
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Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLLSLNRKRVSGVSQMITQINHFLVFFPVSNEKTSIMQKQNAFFIPVRVRSFCSSRLTHQPKVSLAESTQPPASLVASRVSRLARTEAQEVLFDYLHSTRSLGYMDAEHISKNSPDFVLNLLSKIDSGKDVTRSLMRFLRYNPINEFEPFFESLGLSQSELSPLLPRHLMFLSDDEVLLDNFHVLCDYGIPRSKMGKMYVEATEIFRHDRGVLASKLWAYENLGLSKNTVIKLVSCCPSLLIGGVDSRFVKVLEKLKELGFKNDWIGRYLPGKGSYNWDQVSETLDFLYKIGYNEVQLLNLFKTNPALVFEGSGQKVYVLFGRLLKLGLKMNEVYSLFSQNPQILSSKFVKNLLQAVGFLIEIGMGMKDISNMVLMHAELMGSCSLKGPKTVCSKLKVGRESLCQIIKDDPLKLFHLASKTEVKIDEQVDCQNPSKDVEKTEFLLRLGYVENSEEVTKALKQFRGRGDQLQERFDCLVQAGLDSNVVRNIVKRAPMVLNQSKDVLEKKIDYLKNYLCYPLESVVAFPAYLCYDMGRINHRCKMYVWLRERGVAKPTLSLSTILACSDAKFEKYFVDVHPEGPAMWESLKKSSNSS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	595	2.2.26 [Sep-21-2011]
Q5ZJC8	405	mTERF domain-containing p	yes	no	0.443	0.651	0.233	6e-05

>sp|Q5ZJC8|MTER1_CHICK mTERF domain-containing protein 1, mitochondrial OS=Gallus gallus GN=MTERFD1 PE=2 SV=1

 Score = 49.7 bits (117), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 74/317 (23%), Positives = 135/317 (42%), Gaps = 53/317 (16%)

Query: 277 NWDQVSETLDFLYKIGYNE-VQLLNLFKTNPALVFEGSGQKVYV----LFGRLLKLGLKM 331
           +WD V  +   L +I   E V+++     +P L  + S  + YV       +L+ LG+ +
Sbjct: 100 DWDDVPPS-SALEEISEEEAVKII----ADPLLPPQSSTLRDYVDHSETLTKLVHLGVDL 154

Query: 332 NEVYSLFSQNPQILSSKFVKNLLQAVGFLIEIGMGMKDISNMVLMHAELMGSCSLKGPKT 391
           ++V         +L+  F K++ + + FL ++G+    +   +  +  ++G   L+  +T
Sbjct: 155 SQVEKRQKAGQLLLTLDFEKDITKILLFLKDVGIEDNQLGPFLTKNPYILGE-ELEALET 213

Query: 392 VCSKLK---VGRESLCQIIKDDP-LKLFHLASKTEVKIDEQVDCQNPSKDVEKTEFLLRL 447
             + LK    G   + Q++   P L LF +         E++D               RL
Sbjct: 214 RVAYLKSKKFGNAEITQMVSRAPYLLLFSV---------ERLDN--------------RL 250

Query: 448 GYVEN----SEEVTKAL-----KQFRGRGDQLQERFD-CLVQAGLDSNVVRNIVKRAPMV 497
           G+ +N    S + TK L     +   G+ + ++E    C V+ G + N V+ I  + P +
Sbjct: 251 GFFKNELGLSVKKTKDLVIRFPRLLTGKLEPVKENLQVCQVEFGFERNEVQQIAFKTPKI 310

Query: 498 LNQSKDVLEKKIDYLKNYLCYPLESVVAFPAYLCYDMGRINHRCKMYVWLRERGVAKPT- 556
           L  SK  L +  DYL N +  P   +  FP      + RI  R  M++    R    PT 
Sbjct: 311 LTASKKRLRQTFDYLHNIMGIPHNMLTRFPQVFNSKLLRIKER-HMFLIFLGRAQYDPTK 369

Query: 557 ---LSLSTILACSDAKF 570
              +SL  +++  D  F
Sbjct: 370 PSYISLDQLVSLPDEVF 386

Binds promoter DNA and regulates initiation of transcription. Required for normal mitochondrial transcription, and for normal assembly of mitochondrial respiratory complexes. Required for normal mitochondrial function.
Gallus gallus (taxid: 9031)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	595
359484084	564	PREDICTED: uncharacterized protein LOC10	0.941	0.992	0.647	0.0
224115418	577	predicted protein [Populus trichocarpa]	0.969	1.0	0.632	0.0
356553729	564	PREDICTED: uncharacterized protein LOC10	0.865	0.913	0.578	1e-173
79478031	575	Mitochondrial transcription termination	0.912	0.944	0.530	1e-173
297804174	550	hypothetical protein ARALYDRAFT_914700 [	0.912	0.987	0.525	1e-172
3250674	557	putative protein [Arabidopsis thaliana]	0.882	0.942	0.511	1e-163
357493099	592	hypothetical protein MTR_5g084810 [Medic	0.951	0.956	0.452	1e-140
255579009	523	conserved hypothetical protein [Ricinus	0.855	0.973	0.471	1e-132
225441407	589	PREDICTED: uncharacterized protein LOC10	0.853	0.862	0.481	1e-131
255579007	573	conserved hypothetical protein [Ricinus	0.887	0.921	0.454	1e-131

>gi|359484084|ref|XP_002274185.2| PREDICTED: uncharacterized protein LOC100242606 [Vitis vinifera]

 Score =  746 bits (1926), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 374/578 (64%), Positives = 453/578 (78%), Gaps = 18/578 (3%)

Query: 16  MITQINHFLVFF--PVSNEKTSIMQKQNAFFIPVRVRSFCSSRLTHQPKVSLAESTQPPA 73
           MI Q+NH+ V    P S    S        F P+R+R F   R  +  K+   ES+ P  
Sbjct: 1   MICQLNHYGVVLRKPTSAHTLS--------FTPLRIRYFHCCRPANYLKL---ESSIP-- 47

Query: 74  SLVASRVSRLARTEAQEVLFDYLHSTRSLGYMDAEHISKNSPDFVLNLLSKIDSGKDVTR 133
                RVSR+ RTEAQ+VLFDYLH TRS    DAEH+SKNSP F+  LLSK+++ +DV R
Sbjct: 48  ---GRRVSRVVRTEAQDVLFDYLHCTRSFHLTDAEHMSKNSPHFLQKLLSKVENEQDVAR 104

Query: 134 SLMRFLRYNPINEFEPFFESLGLSQSELSPLLPRHLMFLSDDEVLLDNFHVLCDYGIPRS 193
           SL +FLRYNPINEFEPFFESLGL+ SE+S LLPR+LMFLSDD V+++N+HVLCDYGI RS
Sbjct: 105 SLSKFLRYNPINEFEPFFESLGLAPSEISALLPRNLMFLSDDCVMIENYHVLCDYGIARS 164

Query: 194 KMGKMYVEATEIFRHDRGVLASKLWAYENLGLSKNTVIKLVSCCPSLLIGGVDSRFVKVL 253
            +G+MY E   IFR++ G+L SK+ AYE LGLS++TVIKLVSCCP LL+GGV+S+FV VL
Sbjct: 165 SIGRMYKEVQAIFRYELGLLGSKVRAYEGLGLSRSTVIKLVSCCPWLLVGGVNSQFVMVL 224

Query: 254 EKLKELGFKNDWIGRYLPGKGSYNWDQVSETLDFLYKIGYNEVQLLNLFKTNPALVFEGS 313
           +++K LGF++DWIG YL GK SYNW ++ +T+DFL K+GY+E Q+++LFKTNP L+FEGS
Sbjct: 225 KRVKGLGFESDWIGGYLSGKSSYNWKRMHDTIDFLEKVGYSEEQMVSLFKTNPELLFEGS 284

Query: 314 GQKVYVLFGRLLKLGLKMNEVYSLFSQNPQILSSKFVKNLLQAVGFLIEIGMGMKDISNM 373
           G+K YVL GRLLKLG KM  V SLF QNPQILS K VKNL QAVGFL EIGM ++DI ++
Sbjct: 285 GKKFYVLIGRLLKLGFKMKGVLSLFLQNPQILSKKCVKNLWQAVGFLFEIGMKVEDIVSI 344

Query: 374 VLMHAELMGSCSLKGPKTVCSKLKVGRESLCQIIKDDPLKLFHLASKTEVKIDEQVDCQN 433
           V  H +L+ SCSLKGP+TV   LKVGRE LCQIIK+DP +L  LASK+++   E V CQ+
Sbjct: 345 VSSHVQLLCSCSLKGPRTVLRSLKVGREGLCQIIKEDPSELLSLASKSKINSMEHVTCQS 404

Query: 434 PSKDVEKTEFLLRLGYVENSEEVTKALKQFRGRGDQLQERFDCLVQAGLDSNVVRNIVKR 493
           PSK +EKT FLLRLGYVENS+E+ KALK FRGRGDQLQERFDCLVQAGLD NVV N++K+
Sbjct: 405 PSKHLEKTTFLLRLGYVENSDEMFKALKLFRGRGDQLQERFDCLVQAGLDCNVVSNMIKQ 464

Query: 494 APMVLNQSKDVLEKKIDYLKNYLCYPLESVVAFPAYLCYDMGRINHRCKMYVWLRERGVA 553
           AP VLNQ+K V+EKKID L+N L YPL+SVVAFP+YLCYD+ RIN R  MYVWLR++G A
Sbjct: 465 APSVLNQTKYVIEKKIDCLRNCLGYPLQSVVAFPSYLCYDIERINLRFSMYVWLRDKGAA 524

Query: 554 KPTLSLSTILACSDAKFEKYFVDVHPEGPAMWESLKKS 591
           K  LSLSTILACSDA+F KYFVDVHPEGPA WE L+KS
Sbjct: 525 KSNLSLSTILACSDARFVKYFVDVHPEGPAQWERLRKS 562

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224115418|ref|XP_002332130.1| predicted protein [Populus trichocarpa] gi|222875180|gb|EEF12311.1| predicted protein [Populus trichocarpa]

 Score =  745 bits (1923), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 367/580 (63%), Positives = 455/580 (78%), Gaps = 3/580 (0%)

Query: 16  MITQINHFLVFFPVSNEKTSIMQKQNAFFIPVRVRSFCSSRLTHQPKVSLAESTQPPASL 75
           MI Q+N  LVF PV  E +   +KQN F   ++V+ FCSSR +   KVS + S Q   +L
Sbjct: 1   MIAQVNKSLVFSPVDIEIS--YKKQNPFLSSLKVQCFCSSRSSQNAKVSHSGSVQSLVTL 58

Query: 76  VASRVSRLARTEAQEVLFDYLHSTRSLGYMDAEHISKNSPDFVLNLLSKIDSGKDVTRSL 135
            ++RVSR+ART+AQ VLFDYLH TR+  + DAEHISKNSP F+ NLL+KID+ KDV R L
Sbjct: 59  HSTRVSRVARTDAQRVLFDYLHCTRNFDFNDAEHISKNSPHFIENLLTKIDNDKDVVRLL 118

Query: 136 MRFLRYNPINEFEPFFESLGLSQSELSPLLPRHLMFLSDDEVLLDNFHVLCDYGIPRSKM 195
            +FLRYNPINEFEPFFESLGL  SE+  +LP HLM+L D+++LL+NFHVLC+YGIPRSK+
Sbjct: 119 NKFLRYNPINEFEPFFESLGLRPSEVPSVLPPHLMYLGDNDMLLENFHVLCNYGIPRSKI 178

Query: 196 GKMYVEATEIFRHDRGVLASKLWAYENLGLSKNTVIKLVSCCPSLLIGGVDSRFVKVLEK 255
           G+MY EA EIF ++ GVL  KL AYENLGLSK TV+KLVSCCPSLLIGGVD  FV VL +
Sbjct: 179 GRMYKEAIEIFGYNYGVLKLKLLAYENLGLSKTTVVKLVSCCPSLLIGGVDREFVNVLGR 238

Query: 256 LKELGFKNDWIGRYLPGKGSYNWDQVSETLDFLYKIGYNEVQLLNLFKTNPALVFEGSGQ 315
           L   G KND IG YL  K SY+W ++ +T+ FL K+GY+E Q  +L KTNP LVFEGSG+
Sbjct: 239 LNRAGLKNDLIGGYLSAKESYDWKRLIDTIYFLDKVGYSEEQFRDLLKTNPVLVFEGSGK 298

Query: 316 KVYVLFGRLLKLGLKMNEVYSLFSQNPQILSSKFVKNLLQAVGFLIEIGMGMKDISNMVL 375
           KVY+LFGRLLKLGLK+NE+YSLF+Q PQILS+K  KNLL+ +  L+ IGMG++DI+N++ 
Sbjct: 299 KVYLLFGRLLKLGLKVNEIYSLFTQYPQILSAKRAKNLLRGIHILLGIGMGVEDIANIIS 358

Query: 376 MHAELMGSCSLKGPKTVCSKLKVGRESLCQIIKDDPLKLFHLASKTEVKIDEQVDCQNPS 435
              EL+ S +LKGP T+  + K  ++SLCQI+ ++PL+LFHL SK+EV+  + +  Q P+
Sbjct: 359 TQMELLCSAALKGPVTLRRQFKDKKDSLCQILMENPLELFHLDSKSEVESSKMLSSQGPT 418

Query: 436 KDVEKTEFLLRLGYVENSEEVTKALKQFRGRGDQLQERFDCLVQAGLDSNVVRNIVKRAP 495
             +EKT FLLRLGYVENS+E+ +ALK FRGRGDQLQERFDC VQAGLD NVV + +K+AP
Sbjct: 419 NKLEKTAFLLRLGYVENSDEMARALKMFRGRGDQLQERFDCPVQAGLDCNVVSSFIKQAP 478

Query: 496 MVLNQSKDVLEKKIDYLKNYLCYPLESVVAFPAYLCYDMGRINHRCKMYVWLRERGVAKP 555
           MVLNQ+KDV+EKKID L N  C  + S+VAFP+YLCYDM RIN R +MY WL+E+G AKP
Sbjct: 479 MVLNQTKDVIEKKIDCLTNLGC-SVNSLVAFPSYLCYDMERINLRFRMYTWLKEKGAAKP 537

Query: 556 TLSLSTILACSDAKFEKYFVDVHPEGPAMWESLKKSSNSS 595
            LSLSTILACSDA+F KYFVDVHPEGPAMWESL+ +S SS
Sbjct: 538 KLSLSTILACSDARFIKYFVDVHPEGPAMWESLRNTSASS 577

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356553729|ref|XP_003545205.1| PREDICTED: uncharacterized protein LOC100803162 [Glycine max]

 Score =  616 bits (1588), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 298/515 (57%), Positives = 387/515 (75%)

Query: 79  RVSRLARTEAQEVLFDYLHSTRSLGYMDAEHISKNSPDFVLNLLSKIDSGKDVTRSLMRF 138
           RVSRL R+EAQ  L DY+HSTR   + DAE+IS+NSP F+ +L+S ID   DV RSL RF
Sbjct: 46  RVSRLLRSEAQHALMDYMHSTRGYTFSDAEYISENSPRFIESLVSMIDDKDDVLRSLERF 105

Query: 139 LRYNPINEFEPFFESLGLSQSELSPLLPRHLMFLSDDEVLLDNFHVLCDYGIPRSKMGKM 198
           LRYNPINEFEPFFESLG+  SEL   LP  + FL+DD VLL NFH LC+YG+PR++MGK 
Sbjct: 106 LRYNPINEFEPFFESLGIDPSELYLFLPHGMFFLADDHVLLQNFHALCNYGVPRNRMGKF 165

Query: 199 YVEATEIFRHDRGVLASKLWAYENLGLSKNTVIKLVSCCPSLLIGGVDSRFVKVLEKLKE 258
           + EA EIF +  GVL SKL AYENLGL K+TV+KLV CCP LL+G V+  FV VL+ LK 
Sbjct: 166 FKEAKEIFGYASGVLLSKLEAYENLGLRKSTVVKLVVCCPLLLVGDVNFEFVSVLDWLKR 225

Query: 259 LGFKNDWIGRYLPGKGSYNWDQVSETLDFLYKIGYNEVQLLNLFKTNPALVFEGSGQKVY 318
           +G ++DW+  YL    +Y+W ++ + + FL+K+GY+E Q+ NLF+ NP L+ EG G+KVY
Sbjct: 226 IGIESDWMVNYLSCSRTYSWKRMLDAMLFLHKVGYSEEQMHNLFRENPKLLLEGFGRKVY 285

Query: 319 VLFGRLLKLGLKMNEVYSLFSQNPQILSSKFVKNLLQAVGFLIEIGMGMKDISNMVLMHA 378
           ++FGRLLK+G++MN VYS F + P IL +K   ++L+ + FL  IGMG  DI++++  + 
Sbjct: 286 LVFGRLLKVGVEMNVVYSYFVEYPNILLNKCANDMLRVIDFLGAIGMGKDDITHILSKYM 345

Query: 379 ELMGSCSLKGPKTVCSKLKVGRESLCQIIKDDPLKLFHLASKTEVKIDEQVDCQNPSKDV 438
            L+ + SLKG KTVC +LKVG+  L QIIKDDPLKL  LASK E K + +VD  +P   +
Sbjct: 346 HLLITRSLKGHKTVCQELKVGKADLYQIIKDDPLKLISLASKQEQKGNGKVDSHDPRNYL 405

Query: 439 EKTEFLLRLGYVENSEEVTKALKQFRGRGDQLQERFDCLVQAGLDSNVVRNIVKRAPMVL 498
           EKT FLL+LGY+ENSEE+ KALK FRGRGDQLQERFDCLV+AGLD N V  ++KRAPM+L
Sbjct: 406 EKTTFLLKLGYIENSEEMAKALKMFRGRGDQLQERFDCLVEAGLDYNSVIEMIKRAPMIL 465

Query: 499 NQSKDVLEKKIDYLKNYLCYPLESVVAFPAYLCYDMGRINHRCKMYVWLRERGVAKPTLS 558
           +Q+K V++KKID+LKN L YPLE +V FP Y C+D+ +I  R  MY WL+ER    PTL+
Sbjct: 466 SQNKAVIQKKIDFLKNVLDYPLEGLVGFPTYFCHDLDKIVERLSMYAWLKERNAVNPTLT 525

Query: 559 LSTILACSDAKFEKYFVDVHPEGPAMWESLKKSSN 593
           LSTI+A +D +F KYFV+VHP+G A+W+ LK+ SN
Sbjct: 526 LSTIIASNDKRFVKYFVNVHPQGSAIWKGLKRLSN 560

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|79478031|ref|NP_193700.2| Mitochondrial transcription termination factor family protein [Arabidopsis thaliana] gi|332658810|gb|AEE84210.1| Mitochondrial transcription termination factor family protein [Arabidopsis thaliana]

 Score =  615 bits (1587), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 315/594 (53%), Positives = 408/594 (68%), Gaps = 51/594 (8%)

Query: 1   MLLSLNRKRVSGVSQMITQINHFLVFFPVSNEKTSIMQKQNAFFIPVRVRSFCSSRLTHQ 60
           MLLS N++RV  +  MI+ +N+ + F  +  +    +Q+  A F+ + + S+ ++RLT+Q
Sbjct: 32  MLLSRNQRRVHKLLNMISNLNYCITFSSIPRQNP--VQRLKAVFVRINL-SYNNTRLTYQ 88

Query: 61  PKVSLAESTQPPASLVASRVSRLARTEAQEVLFDYLHSTRSLGYMDAEHISKNSPDFVLN 120
                                                          EHISKNSP F+  
Sbjct: 89  ----------------------------------------------LEHISKNSPCFMST 102

Query: 121 LLSKIDSG-KDVTRSLMRFLRYNPINEFEPFFESLGLSQSELSPLLPRHLMFLSDDEVLL 179
           LLSKID   KDV++ L +FLRYNPINEFEPFFESLGL   E    LPR LMFLSDD ++ 
Sbjct: 103 LLSKIDDNQKDVSKGLTKFLRYNPINEFEPFFESLGLCPYEFETFLPRKLMFLSDDGIMF 162

Query: 180 DNFHVLCDYGIPRSKMGKMYVEATEIFRHDRGVLASKLWAYENLGLSKNTVIKLVSCCPS 239
           +NFH LC+YGIPR K+G+MY EA EIFR++ G+LA KL  YENLGLSK TVIKLV+ CP 
Sbjct: 163 ENFHALCNYGIPRGKIGRMYKEAREIFRYESGMLAMKLRGYENLGLSKATVIKLVTSCPL 222

Query: 240 LLIGGVDSRFVKVLEKLKELGFKNDWIGRYLPGKGSYNWDQVSETLDFLYKIGYNEVQLL 299
           LL+GG+D+ F  V++KLK L    DW+GRYL  + +Y+W ++ ET++FL K+G  E +L 
Sbjct: 223 LLVGGIDAEFSSVVDKLKGLQVGCDWLGRYLSDRKTYSWRRILETIEFLDKVGCKEEKLS 282

Query: 300 NLFKTNPALVFEGSGQKVYVLFGRLLKLGLKMNEVYSLFSQNPQILSSKFVKNLLQAVGF 359
           +L KT PALV EGSG+K YVLFGRL K GL++NE+Y LF  NP++LS K VKN+ + + F
Sbjct: 283 SLLKTYPALVIEGSGKKFYVLFGRLFKAGLQVNEIYRLFIDNPEMLSDKCVKNIQKTLDF 342

Query: 360 LIEIGMGMKDISNMVLMHAELMGSCSLKGPKTVCSKLKVGRESLCQIIKDDPLKLFHLAS 419
           LI I M  + I+ ++L H EL+GSCSL  P+T C  L V ++ LC+I+K +PL+LF   S
Sbjct: 343 LIAIRMETQFITKILLSHMELIGSCSLPAPRTACLSLNVKQDELCKILKKEPLRLFCFVS 402

Query: 420 KTEVKIDEQVDCQNPSKDVEKTEFLLRLGYVENSEEVTKALKQFRGRGDQLQERFDCLVQ 479
            T+ +  + +  ++  K +EKTEFLLRLGYVENS+E+ KALKQFRGRGDQLQERFDCLV+
Sbjct: 403 TTKKRKSKPLS-EDSRKYLEKTEFLLRLGYVENSDEMVKALKQFRGRGDQLQERFDCLVK 461

Query: 480 AGLDSNVVRNIVKRAPMVLNQSKDVLEKKIDYLKNYLCYPLESVVAFPAYLCYDMGRINH 539
           AGL+ NVV  I++ APM+LN SKDV+EKKI  L   L YP+ES+V FPAYLCYDM RI+H
Sbjct: 462 AGLNYNVVTEIIRHAPMILNLSKDVIEKKIHSLTELLGYPIESLVRFPAYLCYDMQRIHH 521

Query: 540 RCKMYVWLRERGVAKPTLSLSTILACSDAKFEKYFVDVHPEGPAMWESLKKSSN 593
           R  MY+WLRER  AKP LS STIL C DA+F KYFV+VHPEGPA+WES+ +SS 
Sbjct: 522 RFSMYLWLRERDAAKPMLSPSTILTCGDARFVKYFVNVHPEGPAIWESINQSST 575

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297804174|ref|XP_002869971.1| hypothetical protein ARALYDRAFT_914700 [Arabidopsis lyrata subsp. lyrata] gi|297315807|gb|EFH46230.1| hypothetical protein ARALYDRAFT_914700 [Arabidopsis lyrata subsp. lyrata]

 Score =  610 bits (1573), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 312/594 (52%), Positives = 405/594 (68%), Gaps = 51/594 (8%)

Query: 1   MLLSLNRKRVSGVSQMITQINHFLVFFPVSNEKTSIMQKQNAFFIPVRVRSFCSSRLTHQ 60
           MLL   ++RV  +  MI+ +N+ + F P+  +    +Q+  A F+ + + S+ ++RLT+Q
Sbjct: 7   MLLCREQRRVHKLLNMISNLNNCIAFSPIPRQNQ--VQRLKAVFVRINL-SYNNTRLTYQ 63

Query: 61  PKVSLAESTQPPASLVASRVSRLARTEAQEVLFDYLHSTRSLGYMDAEHISKNSPDFVLN 120
                                                          EHISKNSP F+  
Sbjct: 64  ----------------------------------------------LEHISKNSPCFMST 77

Query: 121 LLSKIDSG-KDVTRSLMRFLRYNPINEFEPFFESLGLSQSELSPLLPRHLMFLSDDEVLL 179
           LLSKID   KDV+R L +FLRYNPINEFEPFFESLGL   E    LP+ LMFLSDD ++ 
Sbjct: 78  LLSKIDDNHKDVSRGLTKFLRYNPINEFEPFFESLGLCPYEFETFLPQKLMFLSDDGIMF 137

Query: 180 DNFHVLCDYGIPRSKMGKMYVEATEIFRHDRGVLASKLWAYENLGLSKNTVIKLVSCCPS 239
           +NFH LC+YGIPR K+G MY EA EIFR++ G+LA KL  YENLGLSK TVIKLV+ CP 
Sbjct: 138 ENFHALCNYGIPRGKIGHMYKEAREIFRYESGLLAMKLRDYENLGLSKATVIKLVTSCPL 197

Query: 240 LLIGGVDSRFVKVLEKLKELGFKNDWIGRYLPGKGSYNWDQVSETLDFLYKIGYNEVQLL 299
           LL+GG+D+ F  V++KLK L    DW+GRYL  + +Y+W ++ ET++FL K+G  +  L 
Sbjct: 198 LLVGGIDAEFASVVDKLKGLQVGCDWLGRYLSDRRTYSWRRILETIEFLDKVGCKDENLS 257

Query: 300 NLFKTNPALVFEGSGQKVYVLFGRLLKLGLKMNEVYSLFSQNPQILSSKFVKNLLQAVGF 359
           +L KT PALV EGSG+K YVLFGRL K+GL++NE+Y LF  NP++LS K VKN+ + + F
Sbjct: 258 SLLKTYPALVIEGSGKKFYVLFGRLFKVGLQVNEIYRLFIDNPEMLSDKCVKNIQKTLDF 317

Query: 360 LIEIGMGMKDISNMVLMHAELMGSCSLKGPKTVCSKLKVGRESLCQIIKDDPLKLFHLAS 419
           LI I M  + I+ ++L H EL+GSCSL  P+T C  L V ++ LCQ++K +PL+LF   S
Sbjct: 318 LIAIRMETQFITKILLSHMELIGSCSLPAPRTACLSLNVRQDELCQLLKKEPLRLFSFVS 377

Query: 420 KTEVKIDEQVDCQNPSKDVEKTEFLLRLGYVENSEEVTKALKQFRGRGDQLQERFDCLVQ 479
            T+ +  + +  ++  K +EKT FLLRLGYVENS+E+ KALKQFRGRGDQLQERFDCLV+
Sbjct: 378 TTKKRKSKPLS-EDSRKYLEKTAFLLRLGYVENSDEMVKALKQFRGRGDQLQERFDCLVK 436

Query: 480 AGLDSNVVRNIVKRAPMVLNQSKDVLEKKIDYLKNYLCYPLESVVAFPAYLCYDMGRINH 539
           AGL+ NVV  I++ APM+LN SKDV+EKKI  L   L YP+ES+V FPAYLCYDM RI+H
Sbjct: 437 AGLNHNVVTEIIRHAPMILNLSKDVIEKKIHSLTELLGYPIESLVRFPAYLCYDMQRIHH 496

Query: 540 RCKMYVWLRERGVAKPTLSLSTILACSDAKFEKYFVDVHPEGPAMWESLKKSSN 593
           R  MY+WLRER  AKP LS STIL C DA+F KYFV+VHPEGPA+WES+ +SS 
Sbjct: 497 RFSMYLWLRERDAAKPMLSPSTILTCGDARFVKYFVNVHPEGPAIWESINQSST 550

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|3250674|emb|CAA19682.1| putative protein [Arabidopsis thaliana] gi|7268761|emb|CAB78967.1| putative protein [Arabidopsis thaliana]

 Score =  581 bits (1498), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 304/594 (51%), Positives = 394/594 (66%), Gaps = 69/594 (11%)

Query: 1   MLLSLNRKRVSGVSQMITQINHFLVFFPVSNEKTSIMQKQNAFFIPVRVRSFCSSRLTHQ 60
           MLLS N++RV  +  MI+ +N+ + F  +  +    +Q+  A F+ + + S+ ++RLT+Q
Sbjct: 32  MLLSRNQRRVHKLLNMISNLNYCITFSSIPRQNP--VQRLKAVFVRINL-SYNNTRLTYQ 88

Query: 61  PKVSLAESTQPPASLVASRVSRLARTEAQEVLFDYLHSTRSLGYMDAEHISKNSPDFVLN 120
                                                          EHISKNSP F+  
Sbjct: 89  ----------------------------------------------LEHISKNSPCFMST 102

Query: 121 LLSKIDSG-KDVTRSLMRFLRYNPINEFEPFFESLGLSQSELSPLLPRHLMFLSDDEVLL 179
           LLSKID   KDV++ L +FLRYNPINEFEPFFESLGL   E    LPR LMFLSDD ++ 
Sbjct: 103 LLSKIDDNQKDVSKGLTKFLRYNPINEFEPFFESLGLCPYEFETFLPRKLMFLSDDGIMF 162

Query: 180 DNFHVLCDYGIPRSKMGKMYVEATEIFRHDRGVLASKLWAYENLGLSKNTVIKLVSCCPS 239
           +NFH LC+YGIPR K+G+MY EA EIFR++ G+LA KL  YENLGLSK TVIKLV+ CP 
Sbjct: 163 ENFHALCNYGIPRGKIGRMYKEAREIFRYESGMLAMKLRGYENLGLSKATVIKLVTSCPL 222

Query: 240 LLIGGVDSRFVKVLEKLKELGFKNDWIGRYLPGKGSYNWDQVSETLDFLYKIGYNEVQLL 299
           LL+GG+D+ F  V++KLK L    DW+GRYL  + +Y+W ++ ET++FL K+G  E +L 
Sbjct: 223 LLVGGIDAEFSSVVDKLKGLQVGCDWLGRYLSDRKTYSWRRILETIEFLDKVGCKEEKLS 282

Query: 300 NLFKTNPALVFEGSGQKVYVLFGRLLKLGLKMNEVYSLFSQNPQILSSKFVKNLLQAVGF 359
           +L KT PALV EGSG+K YVLF                   NP++LS K VKN+ + + F
Sbjct: 283 SLLKTYPALVIEGSGKKFYVLF------------------DNPEMLSDKCVKNIQKTLDF 324

Query: 360 LIEIGMGMKDISNMVLMHAELMGSCSLKGPKTVCSKLKVGRESLCQIIKDDPLKLFHLAS 419
           LI I M  + I+ ++L H EL+GSCSL  P+T C  L V ++ LC+I+K +PL+LF   S
Sbjct: 325 LIAIRMETQFITKILLSHMELIGSCSLPAPRTACLSLNVKQDELCKILKKEPLRLFCFVS 384

Query: 420 KTEVKIDEQVDCQNPSKDVEKTEFLLRLGYVENSEEVTKALKQFRGRGDQLQERFDCLVQ 479
            T+ +  + +  ++  K +EKTEFLLRLGYVENS+E+ KALKQFRGRGDQLQERFDCLV+
Sbjct: 385 TTKKRKSKPLS-EDSRKYLEKTEFLLRLGYVENSDEMVKALKQFRGRGDQLQERFDCLVK 443

Query: 480 AGLDSNVVRNIVKRAPMVLNQSKDVLEKKIDYLKNYLCYPLESVVAFPAYLCYDMGRINH 539
           AGL+ NVV  I++ APM+LN SKDV+EKKI  L   L YP+ES+V FPAYLCYDM RI+H
Sbjct: 444 AGLNYNVVTEIIRHAPMILNLSKDVIEKKIHSLTELLGYPIESLVRFPAYLCYDMQRIHH 503

Query: 540 RCKMYVWLRERGVAKPTLSLSTILACSDAKFEKYFVDVHPEGPAMWESLKKSSN 593
           R  MY+WLRER  AKP LS STIL C DA+F KYFV+VHPEGPA+WES+ +SS 
Sbjct: 504 RFSMYLWLRERDAAKPMLSPSTILTCGDARFVKYFVNVHPEGPAIWESINQSST 557

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357493099|ref|XP_003616838.1| hypothetical protein MTR_5g084810 [Medicago truncatula] gi|355518173|gb|AES99796.1| hypothetical protein MTR_5g084810 [Medicago truncatula]

 Score =  506 bits (1304), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 260/575 (45%), Positives = 376/575 (65%), Gaps = 9/575 (1%)

Query: 23  FLVFFPVSNEKTSIMQKQNAFFIPVRVRSFCSSRLTHQPKV-SLAESTQPPASLVASRVS 81
           F ++ P S  + S    QN  F+    R   SS ++ +  + + ++STQ PA      + 
Sbjct: 14  FFLYNPNSTPQNSNFSHQNPNFL----RQNPSSSISFKNSILNCSKSTQIPALSPPIYIK 69

Query: 82  RLARTEAQEVLFDYLHSTRSLGYMDAEHISKNSPDFVLNLLSKI---DSGKDVTRSLMRF 138
           R  + +AQ  LF+YLH T++  + DAE ISKNSP F+  L+SKI   D G DV R+L R+
Sbjct: 70  RATKIQAQRALFEYLHYTQNYTFSDAEFISKNSPHFIDFLISKINIPDDG-DVFRALSRY 128

Query: 139 LRYNPINEFEPFFESLGLSQSELSPLLPRHLMFLSDDEVLLDNFHVLCDYGIPRSKMGKM 198
           L Y+PINEFEPF ESLG++ ++L   LP+   FL DD VL+DNFHVLC +G+PR++M K+
Sbjct: 129 LMYHPINEFEPFLESLGINHTKLEKFLPKGCYFLCDDSVLVDNFHVLCYHGVPRNRMAKI 188

Query: 199 YVEATEIFRHDRGVLASKLWAYENLGLSKNTVIKLVSCCPSLLIGGVDSRFVKVLEKLKE 258
           Y EA EIF +  GVL  K  AYE+LGLSK+++IKL  CCP LL+G VDS FV VL+ LK 
Sbjct: 189 YTEAREIFGYGNGVLEKKFQAYEDLGLSKSSLIKLFVCCPLLLVGDVDSEFVVVLDWLKR 248

Query: 259 LGFKNDWIGRYLPGKGSYNWDQVSETLDFLYKIGYNEVQLLNLFKTNPALVFEGSGQKVY 318
           +G ++ W    +    +Y+W ++ ETL+F +++GY+E  + +LFK +P L+ EG G+K+Y
Sbjct: 249 IGIESKWFVNCMSSSNTYSWKRMIETLEFFHQVGYSEKHMYDLFKVDPNLLLEGLGRKLY 308

Query: 319 VLFGRLLKLGLKMNEVYSLFSQNPQILSSKFVKNLLQAVGFLIEIGMGMKDISNMVLMHA 378
           +  GR +K G+ +N V S F ++  +LSSK V+NL+  + FL  I M   DI++++  + 
Sbjct: 309 LFLGRFIKSGVDVNVVCSCFIEHSDMLSSKRVENLMSVISFLYNIRMEQDDIAHVLSNYM 368

Query: 379 ELMGSCSLKGPKTVCSKLKVGRESLCQIIKDDPLKLFHLASKTEVKIDEQVDCQNPSKDV 438
            ++   S+KG + VC +L V +  LC+II DDPL+L  LA K + K         P   +
Sbjct: 369 HILSKHSIKGYRAVCMELGVPKADLCRIINDDPLELISLACKQKHKRSGGQSYCVPLSKL 428

Query: 439 EKTEFLLRLGYVENSEEVTKALKQFRGRGDQLQERFDCLVQAGLDSNVVRNIVKRAPMVL 498
           EKT FLL+LGY+ENSEE+ +A+K F GRGDQLQER DCLV+AGLD +    +VKR P +L
Sbjct: 429 EKTAFLLKLGYIENSEEMEEAVKLFPGRGDQLQERLDCLVEAGLDCSTAIRMVKRVPKIL 488

Query: 499 NQSKDVLEKKIDYLKNYLCYPLESVVAFPAYLCYDMGRINHRCKMYVWLRERGVAKPTLS 558
              ++V++KKID+LKN L YP+E +V +P Y   D+ R++ R  MY WL+ER      LS
Sbjct: 489 VLKRNVIQKKIDFLKNTLGYPIECLVRYPTYFLQDVDRMSARVSMYEWLKERNAVSHALS 548

Query: 559 LSTILACSDAKFEKYFVDVHPEGPAMWESLKKSSN 593
           LSTI++  + +F + FV++HPEGP +W+ +K  SN
Sbjct: 549 LSTIVSYDEKRFVQVFVNMHPEGPTIWQRIKTLSN 583

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255579009|ref|XP_002530356.1| conserved hypothetical protein [Ricinus communis] gi|223530103|gb|EEF32017.1| conserved hypothetical protein [Ricinus communis]

 Score =  477 bits (1227), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 244/517 (47%), Positives = 347/517 (67%), Gaps = 8/517 (1%)

Query: 77  ASRVSRLARTEAQEVLFDYLHSTRSLGYMDAEHISKNSPDFVLNLLSKIDSGKDVTRSLM 136
           +S+ S  AR +AQ  L +YLHSTRSL   DAEH+SK SP F+  LL K+D  +DV RS+ 
Sbjct: 7   SSQFSNAARKQAQAALLEYLHSTRSLQVTDAEHMSKGSPSFLEKLLQKVDIKEDVGRSVA 66

Query: 137 RFLRYNPINEFEPFFESLGLSQSELSPLLPRHLMFLSDDEVLLDNFHVLCDYGIPRSKMG 196
           RFLRY+PINEFEPFFESLGL  +E  P LPR LMFLSDDE+LL+N H LC+YGIPR+K+G
Sbjct: 67  RFLRYHPINEFEPFFESLGLRPAEYRPFLPRDLMFLSDDELLLENLHTLCNYGIPRNKIG 126

Query: 197 KMYVEATEIFRHDRGVLASKLWAYENLGLSKNTVIKLVSCCPSLLIGGVDSRFVKVLEKL 256
           ++Y+EA E+F +D GVLA+KL AYE +GL ++ + K+V C P LLIG V+  F+K +E L
Sbjct: 127 RIYIEAGEVFGYDYGVLATKLRAYEEMGLDQSFMAKIVVCSPYLLIGDVNVDFIKSMEIL 186

Query: 257 KELGFKNDWIGRYLPGKGSYNWDQVSETLDFLYKIGYNEVQLLNLFKTNPALVFEGSGQK 316
           ++ G +  WI ++L  K SYNW ++   L+   K  + E QL  +   +P +VFEGSG +
Sbjct: 187 RKGGIELCWIEKHLSEKCSYNWSKLHALLNLFSKACFREEQLCEIISQHPGIVFEGSGDR 246

Query: 317 VYVLFGRLLKLGLKMNEVYSLFSQNPQILSSKFVKNLLQAVGFLIEIGMGMKDISNMVLM 376
              L G L+K G   N++ S+F Q PQI   KF+ N+ Q   FL EI M + +I  ++  
Sbjct: 247 TLSLIGFLVKFGSSKNQICSMFLQFPQIKVGKFLLNMRQCFLFLTEIEMEILEIGKIIRS 306

Query: 377 HAELMGSCSLKGPKTVCSKLKVGRESLCQIIKDDP--LKLFHLASKTE-VKIDEQVDCQN 433
           +  ++GSC+LK   ++ S L VG++ LC II  +P  +K + + SK   +  DE++  + 
Sbjct: 307 YPLMLGSCTLKKSNSLLSCLNVGKKRLCNIILQNPQEMKNWVIGSKVNPLPSDERLRSR- 365

Query: 434 PSKDVEKTEFLLRLGYVENSEEVTKALKQFRGRGDQLQERFDCLVQAGLDSNVVRNIVKR 493
               + K +FLL LG+VENS E+ KALK FRGRG +LQERFD +++AGLD   V  +V++
Sbjct: 366 ----MLKNKFLLDLGFVENSTEMEKALKVFRGRGAELQERFDSIMEAGLDKKDVHEMVRQ 421

Query: 494 APMVLNQSKDVLEKKIDYLKNYLCYPLESVVAFPAYLCYDMGRINHRCKMYVWLRERGVA 553
           AP +LNQ K+V++ KID+  N L +P+ S+V FPA+L Y +  +  +  MY WL+++G  
Sbjct: 422 APQILNQKKEVVKMKIDFFVNDLGFPISSLVTFPAFLNYTIPTVKLKLAMYNWLKDQGKV 481

Query: 554 KPTLSLSTILACSDAKFEKYFVDVHPEGPAMWESLKK 590
            P LSLST+++ SD  F K +V++HP+G   W+ LKK
Sbjct: 482 DPMLSLSTLISTSDKLFVKRYVELHPKGSEFWQDLKK 518

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225441407|ref|XP_002275246.1| PREDICTED: uncharacterized protein LOC100241837 [Vitis vinifera] gi|147864060|emb|CAN83222.1| hypothetical protein VITISV_031366 [Vitis vinifera] gi|297739852|emb|CBI30034.3| unnamed protein product [Vitis vinifera]

 Score =  476 bits (1226), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 247/513 (48%), Positives = 350/513 (68%), Gaps = 5/513 (0%)

Query: 80  VSRLARTEAQEVLFDYLHSTRSLGYMDAEHISKNSPDFVLNLLSKIDSGKDVTRSLMRFL 139
           +SR  R +AQ  L +YLH TRSL +MDAE++SKNSP F+  +L K+ +  ++ +S+ RFL
Sbjct: 75  ISRTTRAQAQAALLEYLHCTRSLQFMDAENMSKNSPFFLEKILGKVKNEAEIGKSITRFL 134

Query: 140 RYNPINEFEPFFESLGLSQSELSPLLPRHLMFLSDDEVLLDNFHVLCDYGIPRSKMGKMY 199
           RY+PINEFEPFFESLGL+ SE + LLPR+LMFL DD+VLL+N+++LC+YGI R+K+GK+Y
Sbjct: 135 RYHPINEFEPFFESLGLTPSEFTNLLPRNLMFLCDDQVLLENYYILCNYGIARNKIGKIY 194

Query: 200 VEATEIFRHDRGVLASKLWAYENLGLSKNTVIKLVSCCPSLLIGGVDSRFVKVLEKLKEL 259
            EA E+FR+D G+L  KL AY  LGLS++T+IK ++  P LLIG  +  FVK +EKLK +
Sbjct: 195 KEAPEVFRYDSGILRLKLQAYLELGLSQSTMIKAIASSPYLLIGDANMDFVKAMEKLKSV 254

Query: 260 GFKNDWIGRYLPGKGSYNWDQVSETLDFLYKIGYNEVQLLNLFKTNPALVFEGSGQKVYV 319
           G +++WI ++L     Y+W Q+   L    K+G+N  QL  L + +P ++ E SG   + 
Sbjct: 255 GIESNWIEKHLSEGNYYDWSQMVGLLCLFSKMGFNGEQLGELIRQHPGILLECSGNLAHS 314

Query: 320 LFGRLLKLGLKMNEVYSLFSQNPQILSSKFVKNLLQAVGFLIEIGMGMKDISNMVLMHAE 379
           L G LLK G   NE+Y  F Q P I   KF +N      FLIEI + +++I  +V  H  
Sbjct: 315 LVGLLLKFGFTTNEIYIFFLQFPPIEFGKFYRNFRHCYLFLIEIELEVEEIGRIVRSHTV 374

Query: 380 LMGSCSLKGPKTVCSKLKVGRESLCQIIKDDP--LKLFHLASKTEVKIDEQVDCQNPSKD 437
           L+GSC+LK   ++ + L +G++ LC IIKD+P  LK + L S+     +   D ++    
Sbjct: 375 LLGSCALKRVNSLLANLNIGKKRLCGIIKDNPQELKKWVLGSRVGPLPNLGEDLRS---Q 431

Query: 438 VEKTEFLLRLGYVENSEEVTKALKQFRGRGDQLQERFDCLVQAGLDSNVVRNIVKRAPMV 497
           ++KT+FL  LGYVEN++E+ KA K FRG+G +LQERFD L++AGLD   V  ++K AP +
Sbjct: 432 LQKTKFLSDLGYVENTKEIEKARKLFRGKGMELQERFDFLMKAGLDRKDVSEMIKVAPQI 491

Query: 498 LNQSKDVLEKKIDYLKNYLCYPLESVVAFPAYLCYDMGRINHRCKMYVWLRERGVAKPTL 557
           LNQS DV+E KIDYL + L YP+ S+V FP+YL Y   R+  R  MY WL+++GVA+P L
Sbjct: 492 LNQSTDVIEMKIDYLIHALGYPISSLVTFPSYLSYTTERVELRMSMYNWLKDQGVAEPNL 551

Query: 558 SLSTILACSDAKFEKYFVDVHPEGPAMWESLKK 590
           +LSTI+ACSD  F   +V+ HP+G  +WE LK+
Sbjct: 552 ALSTIIACSDNYFIDRYVNRHPKGAEIWEKLKQ 584

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255579007|ref|XP_002530355.1| conserved hypothetical protein [Ricinus communis] gi|223530102|gb|EEF32016.1| conserved hypothetical protein [Ricinus communis]

 Score =  474 bits (1219), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 245/539 (45%), Positives = 351/539 (65%), Gaps = 11/539 (2%)

Query: 56  RLTHQPKVSLAESTQPPASLVASRVSRLARTE---AQEVLFDYLHSTRSLGYMDAEHISK 112
           R     +V + +    P+      + +++RT    AQ  L +YLH TRS+ +MDAE++S 
Sbjct: 36  RFYGSERVEICDDLANPSVDSNRSIGKISRTTVKGAQAALLEYLHVTRSIPFMDAENMSV 95

Query: 113 NSPDFVLNLLSKIDSGKDVTRSLMRFLRYNPINEFEPFFESLGLSQSELSPLLPRHLMFL 172
           NSP F+  LL KID+G D+  S+ RFLRY+PINEFEPFFESLGL   EL PLLPR LMFL
Sbjct: 96  NSPHFLKKLLQKIDNGTDIGWSVTRFLRYHPINEFEPFFESLGLKPYELIPLLPRDLMFL 155

Query: 173 SDDEVLLDNFHVLCDYGIPRSKMGKMYVEATEIFRHDRGVLASKLWAYENLGLSKNTVIK 232
           SDD++LL+N++VLC+YGIPR K+G++Y EA EIF ++ G LASKL AYE LGLS+  + K
Sbjct: 156 SDDDLLLENYYVLCNYGIPRYKIGRIYKEAMEIFGYNYGALASKLEAYEQLGLSQYFICK 215

Query: 233 LVSCCPSLLIGGVDSRFVKVLEKLKELGFKNDWIGRYLPGKGSYNWDQVSETLDFLYKIG 292
           +V+C P LLIG V+  FVKV++ L+E G +  WI  +L  + SYNW Q+   L+   K G
Sbjct: 216 VVACSPYLLIGDVNVDFVKVVKILREGGIEFSWIEEHLM-ENSYNWRQILALLNLFRKAG 274

Query: 293 YNEVQLLNLFKTNPALVFEGSGQKVYVLFGRLLKLGLKMNEVYSLFSQNPQILSSKFVKN 352
           YNE QL  L   +P ++FEGSG K   L G L KLG  MN++ S+F Q P++   KFV N
Sbjct: 275 YNEAQLGALISHHPGILFEGSGDKTLSLIGFLFKLGCSMNQICSMFLQFPEMQVGKFVYN 334

Query: 353 LLQAVGFLIEIGMGMKDISNMVLMHAELMGSCSLKGPKTVCSKLKVGRESLCQIIKDDP- 411
           L +    L +I M + +I  +V  H  L+GS +LK   ++ + L +G++ L ++I+++P 
Sbjct: 335 LKRCFLLLTDIEMDINEIGKIVCSHLLLLGSFTLKRTNSILANLNIGKKRLHKLIQENPQ 394

Query: 412 -LKLFHLASKTEVKIDEQVDCQNPSKDVEKTEFLLRLGYVENSEEVTKALKQFRGRGDQL 470
            +K + + S+      E++          KT+FL+ +G V N  ++ +ALK FRGRG ++
Sbjct: 395 EMKRWEMGSRV-----ERLPSSWEESKTLKTKFLVDMGLVNNLNKMEQALKVFRGRGTEI 449

Query: 471 QERFDCLVQAGLDSNVVRNIVKRAPMVLNQSKDVLEKKIDYLKNYLCYPLESVVAFPAYL 530
           QERFDC+V+AGLD   V  ++K +P +LNQ K++LEKKID+L N L YP   +V FP+YL
Sbjct: 450 QERFDCIVKAGLDRKDVLEMIKTSPQILNQKKEILEKKIDFLVNGLGYPASYLVNFPSYL 509

Query: 531 CYDMGRINHRCKMYVWLRERGVAKPTLSLSTILACSDAKFEKYFVDVHPEGPAMWESLK 589
            Y + R+  R  MY WL+E+G     L+LST++AC++  F + +V  HP GP +W+ LK
Sbjct: 510 NYTIVRVKLRLSMYTWLKEQGTIDSKLALSTVIACAENLFVEQYVKHHPRGPVVWQDLK 568

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	595
TAIR|locus:2133920	575	AT4G19650 "AT4G19650" [Arabido	0.860	0.890	0.586	9.3e-165
TAIR|locus:504954990	414	AT5G45113 "AT5G45113" [Arabido	0.694	0.997	0.515	1.1e-110
TAIR|locus:2170209	1141	AT5G06810 "AT5G06810" [Arabido	0.848	0.442	0.432	1.1e-105
TAIR|locus:2103291	558	SHOT1 "AT3G60400" [Arabidopsis	0.847	0.903	0.300	4e-58
TAIR|locus:2049329	641	EMB2219 "embryo defective 2219	0.334	0.310	0.216	7.4e-08
TAIR|locus:2153433	500	PTAC15 "AT5G54180" [Arabidopsi	0.215	0.256	0.303	6.7e-07
TAIR|locus:2051814	507	AT2G44020 "AT2G44020" [Arabido	0.583	0.684	0.210	9.2e-07
TAIR|locus:2036843	457	AT1G61960 "AT1G61960" [Arabido	0.149	0.194	0.258	1.3e-06
TAIR|locus:2172798	457	AT5G23930 "AT5G23930" [Arabido	0.236	0.308	0.25	1.6e-06
UNIPROTKB|F1P3M7	405	MTERFD1 "mTERF domain-containi	0.460	0.676	0.224	1e-05

TAIR|locus:2133920 AT4G19650 "AT4G19650" [Arabidopsis thaliana (taxid:3702)]

 Score = 1543 (548.2 bits), Expect = 9.3e-165, Sum P(2) = 9.3e-165
 Identities = 302/515 (58%), Positives = 383/515 (74%)

Query:    79 RVSRLARTEAQEVLFDYLHSTRSLGYMDAEHISKNSPDFVLNLLSKIDSG-KDVTRSLMR 137
             R + + R +A  V  +  ++   L Y   EHISKNSP F+  LLSKID   KDV++ L +
Sbjct:    62 RQNPVQRLKAVFVRINLSYNNTRLTYQ-LEHISKNSPCFMSTLLSKIDDNQKDVSKGLTK 120

Query:   138 FLRYNPINEFEPFFESLGLSQSELSPLLPRHLMFLSDDEVLLDNFHVLCDYGIPRSKMGK 197
             FLRYNPINEFEPFFESLGL   E    LPR LMFLSDD ++ +NFH LC+YGIPR K+G+
Sbjct:   121 FLRYNPINEFEPFFESLGLCPYEFETFLPRKLMFLSDDGIMFENFHALCNYGIPRGKIGR 180

Query:   198 MYVEATEIFRHDRGVLASKLWAYENLGLSKNTVIKLVSCCPSLLIGGVDSRFVKVLEKLK 257
             MY EA EIFR++ G+LA KL  YENLGLSK TVIKLV+ CP LL+GG+D+ F  V++KLK
Sbjct:   181 MYKEAREIFRYESGMLAMKLRGYENLGLSKATVIKLVTSCPLLLVGGIDAEFSSVVDKLK 240

Query:   258 ELGFKNDWIGRYLPGKGSYNWDQVSETLDFLYKIGYNEVQLLNLFKTNPALVFEGSGQKV 317
              L    DW+GRYL  + +Y+W ++ ET++FL K+G  E +L +L KT PALV EGSG+K 
Sbjct:   241 GLQVGCDWLGRYLSDRKTYSWRRILETIEFLDKVGCKEEKLSSLLKTYPALVIEGSGKKF 300

Query:   318 YVLFGRLLKLGLKMNEVYSLFSQNPQILSSKFVKNLLQAVGFLIEIGMGMKDISNMVLMH 377
             YVLFGRL K GL++NE+Y LF  NP++LS K VKN+ + + FLI I M  + I+ ++L H
Sbjct:   301 YVLFGRLFKAGLQVNEIYRLFIDNPEMLSDKCVKNIQKTLDFLIAIRMETQFITKILLSH 360

Query:   378 AELMGSCSLKGPKTVCSKLKVGRESLCQIIKDDPLKLFHLASKTEVKIDEQVDCQNPSKD 437
              EL+GSCSL  P+T C  L V ++ LC+I+K +PL+LF   S T+ +  + +  ++  K 
Sbjct:   361 MELIGSCSLPAPRTACLSLNVKQDELCKILKKEPLRLFCFVSTTKKRKSKPLS-EDSRKY 419

Query:   438 VEKTEFLLRLGYVENSEEVTKALKQFRGRGDQLQERFDCLVQAGLDSNVVRNIVKRAPMV 497
             +EKTEFLLRLGYVENS+E+ KALKQFRGRGDQLQERFDCLV+AGL+ NVV  I++ APM+
Sbjct:   420 LEKTEFLLRLGYVENSDEMVKALKQFRGRGDQLQERFDCLVKAGLNYNVVTEIIRHAPMI 479

Query:   498 LNQSKDVLEKKIDYLKNYLCYPLESVVAFPAYLCYDMGRINHRCKMYVWLRERGVAKPTL 557
             LN SKDV+EKKI  L   L YP+ES+V FPAYLCYDM RI+HR  MY+WLRER  AKP L
Sbjct:   480 LNLSKDVIEKKIHSLTELLGYPIESLVRFPAYLCYDMQRIHHRFSMYLWLRERDAAKPML 539

Query:   558 SLSTILACSDAKFEKYFVDVHPEGPAMWESLKKSS 592
             S STIL C DA+F KYFV+VHPEGPA+WES+ +SS
Sbjct:   540 SPSTILTCGDARFVKYFVNVHPEGPAIWESINQSS 574

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:504954990 AT5G45113 "AT5G45113" [Arabidopsis thaliana (taxid:3702)]

 Score = 1093 (389.8 bits), Expect = 1.1e-110, P = 1.1e-110
 Identities = 214/415 (51%), Positives = 292/415 (70%)

Query:   178 LLDNFHVLCDYGIPRSKMGKMYVEATEIFRHDRGVLASKLWAYENLGLSKNTVIKLVSCC 237
             + +NFHVLC YGIPR K+G++Y EA EIF ++ GVLASKL  YE L L K  VIKLV+CC
Sbjct:     1 MFENFHVLCYYGIPRDKIGRLYKEAREIFVYENGVLASKLEPYEILVLRKAIVIKLVTCC 60

Query:   238 PSLLIGGVDSRFVKVLEKLKELGFKNDWIGRYLPGKGSYNWDQVSETLDFLYKIGYNEVQ 297
             P LL+GG+D  FV V+ KLK L    DW+ RYL  + +YNW ++ ET++ L K+G+ E +
Sbjct:    61 PLLLVGGIDCEFVSVVNKLKGLNLGCDWLARYLSVRKTYNWRRILETMELLEKVGFKEKK 120

Query:   298 LLNLFKTNPALVFEGSGQKVYVLFGRLLKLGLKMNEVYSLFSQNPQILSSKFVKNLLQAV 357
             L NL K  P LV E SG K Y++F +  K+GL+MNE+  L   N ++L  K VK +L+A+
Sbjct:   121 LSNLLKAYPDLVGETSGNKAYIMFEKFHKVGLQMNEIDKLLIDNSEMLLEKSVKRILEAL 180

Query:   358 GFLIEIGMGMKDISNMVLMHAELMGSCSLKGPKTVCSKLKVGRESLCQIIKDDPLKLFHL 417
              FL  I +  + +   +  H + + S SL  P+ V ++LK+ R+ LCQIIK++PL+LF +
Sbjct:   181 KFLKCIRIEKQFVVRFLQCHMKHICSSSLLVPRAVWNRLKIRRDELCQIIKEEPLRLFSI 240

Query:   418 ASKTEVKIDEQVDCQNPSKDVEKTEFLLRLGYVENSEEVTKALKQFRGRGDQLQERFDCL 477
             ASKT  K   ++D  + S++ EKT FLL+LGYVENS+E+ +ALK+F+GRGD+LQERFDC 
Sbjct:   241 ASKTN-KGRIELDSLD-SRNAEKTTFLLKLGYVENSDEMVRALKKFQGRGDELQERFDCF 298

Query:   478 VQAGLDSNVVRNIVKRAPMVLNQSKDVLEKKIDYLKNYLCYPLESVVAFPAYLCYDMGRI 537
             V+AGLD NVV  +VKRAP +LN+ KD++EKKI  L +YL YP+ESV+  P YLCY M RI
Sbjct:   299 VKAGLDYNVVSQLVKRAPHILNRPKDIIEKKIIMLIDYLVYPIESVIESPTYLCYSMKRI 358

Query:   538 NHRCKMYVWLRERGVAKPTLSLSTILACSDAKFEKYFVDVHPEGPAMWESLKKSS 592
             + R  MY+WLRER    P L+L T++  S+     YFV+ HPEGPA WE++KK+S
Sbjct:   359 HQRFTMYIWLRERDAVIPRLTLGTVVGISNTLIVPYFVNTHPEGPATWENIKKAS 413

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2170209 AT5G06810 "AT5G06810" [Arabidopsis thaliana (taxid:3702)]

 Score = 1026 (366.2 bits), Expect = 1.1e-105, Sum P(2) = 1.1e-105
 Identities = 223/516 (43%), Positives = 315/516 (61%)

Query:    85 RTEAQEVLFDYLHSTRSLGYMDAEHISKNSPDFVLNLLSK-------IDSGKDVTRSLMR 137
             R  AQ  +FDY + TR L ++ AE +SKN+P F  NLL K       +D   D+ +++ R
Sbjct:   623 RKVAQVAMFDYFYQTRGLQFLVAESMSKNAPVFNDNLLKKLNGCDVDVDDDDDIVKAITR 682

Query:   138 FLRYNPINEFEPFFESLGLSQSELSPLLPRHLMFLSDDEVLLDNFHVLCDYGIPRSKMGK 197
             FL ++P+NEFEPF ESLGL  SE S L+P   MFL++D  LL+N+HV  +YGI R KMGK
Sbjct:   683 FLWFHPVNEFEPFLESLGLKPSEFSHLIPCDKMFLNEDAFLLENYHVFWNYGIGREKMGK 742

Query:   198 MYVEATEIFRHDRGVLASKLWAYENLGLSKNTVIKLVSCCPSLLIGGVDSRFVKVLEKLK 257
             ++ EA E+F ++ GVLASK+ +YE+LG SK  + KL+ C PS+LIG ++    KV+E LK
Sbjct:   743 IFKEAREVFGYETGVLASKIKSYEDLGFSKLFLSKLIVCSPSILIGDMNVGLAKVMEMLK 802

Query:   258 ELGFKNDWIGRYLPGKGSYNWDQVSETLDFLYKIGYNEVQLLNLFKTNPALVFEGSGQKV 317
              +GF  DW+   L  + SY+W  +   L FL  +  +E +L  L +  P L+FE SG+  
Sbjct:   803 AIGFGVDWVTENLSEEVSYDWSSMHRCLSFLRDLYVDENELCELIRKMPRLIFEDSGEWT 862

Query:   318 YVLFGRLLKLGLKMNEVYSLFSQNPQILS-SKFVKNLLQAVGFLIEIGMGMKDISNMVLM 376
              +L G   KLG   +E+ SLF + PQ  S  KFV NL     FL +I M   +I  +  +
Sbjct:   863 LILAGFEAKLGSSRSELSSLFQKFPQCQSLGKFVLNLRHCFLFLKDIEMDDDEIGKIFRL 922

Query:   377 HAELMGSCSLKGPKTVCSKLKVGRESLCQIIKDDP--LKLFHLASKTEVKIDEQVDCQNP 434
             H+  +G   LK   T+   LK G+  LCQ+I+++P  +K + +  + +            
Sbjct:   923 HSLWIGVSRLKQTSTLLINLKGGKGRLCQVIQENPEEMKKWIMGLRVQPLPATGYKVNTK 982

Query:   435 SKDVEKTEFLLRLGYVENSEEVTKALKQFRGRGDQLQERFDCLVQAGLDSNVVRNIVKRA 494
             SK + KT+FLL LGY ENSEE+ +ALK FRG+G +L+ERF+ LV  GL    V+++VK  
Sbjct:   983 SKTM-KTQFLLDLGYKENSEEMERALKNFRGKGSELRERFNVLVSFGLTEKDVKDMVKAC 1041

Query:   495 PMVLNQSKDVLEKKIDYLKNYLCYPLESVVAFPAYLCYDMGRINHRCKMYVWLRERGVAK 554
             P +L Q+ D+LE K++YL   L YPL ++V FP  L Y + R+  R  M+ WL++RG A 
Sbjct:  1042 PSILTQACDILESKVNYLVKELGYPLSTLVTFPTCLKYTLQRMKLRFSMFSWLQDRGKAD 1101

Query:   555 PTLSLSTILACSDAKFEKYFVDVHPEGPAMWESLKK 590
             P L +STIL CSD  F   FV+ HP+GP   E LKK
Sbjct:  1102 PKLQVSTILVCSDKFFATRFVNRHPDGPKHLEDLKK 1137

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0008150 "biological_process" evidence=ND

GO:0009536 "plastid" evidence=IDA

TAIR|locus:2103291 SHOT1 "AT3G60400" [Arabidopsis thaliana (taxid:3702)]

 Score = 597 (215.2 bits), Expect = 4.0e-58, P = 4.0e-58
 Identities = 158/526 (30%), Positives = 267/526 (50%)

Query:    76 VASRVSRLARTEAQEVLFDYLHSTRSLGYMDAEHISKNSPDFVLNLLSKID-SGKDVTRS 134
             V S+   LA  +AQ+ + DYLH+TRSL Y  AE I+ N+   + NL+ K+D S    ++S
Sbjct:    25 VPSKYKSLAIGKAQQAITDYLHTTRSLSYTHAEQIASNASVSIRNLILKLDFSVPTFSKS 84

Query:   135 LMRFLRYNPINEFEPFFESLGLSQSELSPLLPRHLMFLSDDEVLLDNFHVLCDYGIPRSK 194
             L + L Y+PINEFE FFES+G+  SE+S  LP    F S+D  +LD    L  +G P +K
Sbjct:    85 LRKHLSYHPINEFEFFFESIGIDYSEVSEFLPEKKFFFSEDRTVLDAAFALSGFGFPWNK 144

Query:   195 MGKMYVEATEIFRHDRGVLASKLWAYENLGLSKNTVIKLVSCCPSLLIGG--VDSRFVKV 252
             +GK+Y E   +F    G + S+L  ++++G S   VI      P  L GG  + S    +
Sbjct:   145 LGKLYKEERLVFVQRPGEIESRLLKFKDIGFSTVAVIGTCLAIPRTLCGGGELGSEIRCL 204

Query:   253 LEKLKELGFKNDWIGRYLPGKGSYNWDQVSETLDFLYKIGYNEVQLLNLFKTNPALVFEG 312
               KLK L F +++   +L  +   +W  VS  +   Y +G    ++  L   N +L  E 
Sbjct:   205 FVKLKRL-F-DEFDSHHLFEENVDSWLAVSRKIRIFYDLGCENEEMWELMCRNKSLFLEY 262

Query:   313 SGQKVYVLFGRLLKLGLKMNEVYSLFSQNPQILSSKFVKNLLQAVGFLIEIGMGMKDISN 372
             S + +    G   + G+   +   L  +NP I++    K ++   G L   G+   ++  
Sbjct:   263 SEEALMNKAGYFCRFGVSKEDAALLILRNPAIMNFDLEKPVISVTGMLKHFGLRQDEVDA 322

Query:   373 MVLMHAELMGSCSLKGPKTVCSKLKVGRESLCQIIKDDPLKLFHLASKTEVKIDEQVD-- 430
             +   +  + G   LK    V   + +  E +  I+K+    L  LAS T +  DE ++  
Sbjct:   323 VAQKYPYVFGRNQLKNLPYVLRAIDL-HERIFDILKNGNHHL--LASYTLMDPDEDLERE 379

Query:   431 -------CQNP-SK--DVEKTEFLLRLGYVENSEEVTKALKQFRGRGDQLQERFDCLVQA 480
                     QN  +K  +++K +FL  +G+ EN   + K L+   G   +L +RF  L+ +
Sbjct:   380 YQEGLEELQNSRTKRHNIQKLDFLHEIGFGENGITM-KVLQHVHGTAVELHDRFQILLNS 438

Query:   481 GLDSNVVRNIVKRAPMVLNQSKDVLEKKIDYLKNYLCYPLESVVAFPAYLCYDM-GRINH 539
             G+  + +  +++ AP +LNQ    ++ K+ +L   +   L+ +  FPAYLC+D+  RI+ 
Sbjct:   439 GIIFSKICMLIRSAPKILNQKPHSIQDKLRFLCGEMGDSLDYLEVFPAYLCFDLENRISP 498

Query:   540 RCKMYVWLRERGVAKPTLSLSTILACSDAKFEKYFVDVHPEGPAMW 585
             R + + WL E+G ++ + S+++I+A S+  F      +HP  P  W
Sbjct:   499 RFRFHKWLVEKGFSEKSYSIASIVATSEKAFIARLYGIHPAIPKHW 544

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0005739 "mitochondrion" evidence=IDA

TAIR|locus:2049329 EMB2219 "embryo defective 2219" [Arabidopsis thaliana (taxid:3702)]

 Score = 114 (45.2 bits), Expect = 7.4e-08, Sum P(3) = 7.4e-08
 Identities = 45/208 (21%), Positives = 89/208 (42%)

Query:   189 GIPRSKMGKMYVEATEIFRHDRGVLASKLWAYENLGLSKNTVIKLVSCCPSLLIGGVDSR 248
             G+ R  MG +     E+       + S++  +  +G+++N    +V   P + IG    +
Sbjct:   292 GVRRDWMGYVVGRCPELLSFSMEEVKSRVDFFLKMGMNQNDFGTMVYDYPKI-IGFFSFQ 350

Query:   249 FV-KVLEKLKELGFKNDWIGRYLPGKGSYNWDQVSET----LDFLYKIGYNEVQLLNLFK 303
              + K +  LKE G   + +GR L  K       + E     + + Y +G  +  +  +  
Sbjct:   351 VMEKKINYLKEFGLSTEEVGRLLAYKPHLMGCSIEERWKPLVKYFYYLGIPKEGMKRILV 410

Query:   304 TNPALVFEGSGQKVYVLFGRLLKLGLKMNEVYSLFSQNPQILSSKFVKNLLQAVGFLI-E 362
               P L      + +      L ++G+    + ++  + P +L++   K +   V FL+  
Sbjct:   411 VKPILYCIDLEKTIAPKVRFLQEMGIPNEAIGNMLVKFPSLLTNSLYKKIRPVVIFLLTR 470

Query:   363 IGMGMKDISNMVLMHAELMGSCSLKGPK 390
              G+  KDI  ++ M   L+G CS+ G K
Sbjct:   471 AGVTQKDIGKVIAMDPALLG-CSI-GTK 496

GO:0005739 "mitochondrion" evidence=ISM

GO:0009793 "embryo development ending in seed dormancy" evidence=NAS

GO:0009507 "chloroplast" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2153433 PTAC15 "AT5G54180" [Arabidopsis thaliana (taxid:3702)]

 Score = 146 (56.5 bits), Expect = 6.7e-07, Sum P(2) = 6.7e-07
 Identities = 41/135 (30%), Positives = 69/135 (51%)

Query:   440 KTEFLLRLGYVENSEEVTKALKQF-RGRGDQLQERFDCLVQAGLDSNVVRNIVKRAPMVL 498
             K  FL+++GY   ++E+  A+    R   D +Q      +  GL    +  +  + P VL
Sbjct:   361 KLGFLVKIGYKHRTKELAFAMGAVTRTSSDNMQRVIGLYLSYGLSFEDILAMSTKHPQVL 420

Query:   499 NQSKDVLEKKIDYLKNYLCYPLESVVAFPAYLCYDM-GRINHRCKMYVWLRERGVAKPTL 557
               +   LE+K++YL  Y+   +E ++AFPA+L Y +  RI HR +    L+ RG     +
Sbjct:   421 QYNYTSLEEKLEYLIEYMGREVEELLAFPAFLGYKLDSRIKHRYEEK--LKSRG---ENM 475

Query:   558 SLSTILACSDAKFEK 572
             SL+ +L  S  +F K
Sbjct:   476 SLNKLLTVSAERFSK 490

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009295 "nucleoid" evidence=IDA

GO:0009508 "plastid chromosome" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0042793 "transcription from plastid promoter" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2051814 AT2G44020 "AT2G44020" [Arabidopsis thaliana (taxid:3702)]

 Score = 146 (56.5 bits), Expect = 9.2e-07, P = 9.2e-07
 Identities = 81/385 (21%), Positives = 162/385 (42%)

Query:   212 VLASKLWAYENLGLSKNTVIKLVSCCPSLLIGGVDSRFVKVLEKLKELGFKNDWIGRYLP 271
             V+  ++   + LGL+ + + +     P +L   V    + VL  L+++G     +G ++ 
Sbjct:   111 VMCERVEFLQKLGLTIDDINEY----PLMLGCSVRKNLIPVLAYLEKIGISRSKLGEFVK 166

Query:   272 GKGSYNWDQV----SETLDFLYKIGYNEVQLLNLFKTNPALV-FEGSGQKVYVLFGRLLK 326
                      V    +  + FL  +   +  L  +    P L+ F+  G  +      L+ 
Sbjct:   167 NYPQVLHASVVVELAPVVKFLRGLDVEKQDLGYVLMKYPELLGFKLEGT-MSTSVAYLVS 225

Query:   327 LGLKMNEVYSLFSQNPQILSSKFVKNLLQAVGFLIEIGMGMKDISNMVLMHAELMG---S 383
             +G+   ++  + +Q P +L  +    +   V +LI IG+  K ++ M+   + ++G    
Sbjct:   226 IGVSPRDIGPMVTQYPYLLGMRVGTMIKPLVDYLISIGLPKKIVARMLEKRSYIVGYNLE 285

Query:   384 CSLKGPKTVCS-KLKVGRESLCQIIKDDPLKLFHLASKTEVKIDEQVDCQNPSKDVEKTE 442
              ++K P   C     V +E L  +I   P ++  L  K ++   +         D E   
Sbjct:   286 ETVK-PNVDCLISFGVKKELLPLLIAQYP-QILGLPVKAKMSTQQYFFSLKLKIDPEG-- 341

Query:   443 FLLRLGYVENSEEVTKALKQFRGRGDQLQERFDCLVQAGLDSNVVRNIVKRAPMVLNQSK 502
                R+  VE   ++  +LKQ     + + +  + L+        +  +V R P +L    
Sbjct:   342 -FARV--VEKMPQIV-SLKQ-----NVIMKPIEFLLGRAFQVEDIAKMVVRCPQILCSRV 392

Query:   503 DVLEKKIDYLKNYLCYPLESVVAFPAYLCYDM-GRINHRCKMYVWLRERGVAKPTLSLST 561
             ++++    + K  +  P++ +V +P Y  Y +  RI  R   Y  L+ +G+     SL+ 
Sbjct:   393 ELMKNSYYFYKTEMGRPMKELVEYPEYFTYSLESRIKPR---YQKLQSKGIRS---SLNW 446

Query:   562 ILACSDAKFEKY----FVDVHPEGP 582
              L CSD +FE+     F+D   EGP
Sbjct:   447 FLNCSDQRFEERLQGNFIDPDTEGP 471

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2036843 AT1G61960 "AT1G61960" [Arabidopsis thaliana (taxid:3702)]

 Score = 97 (39.2 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
 Identities = 24/93 (25%), Positives = 49/93 (52%)

Query:   490 IVKRAPMVLNQSKDVLEKKIDYLKNYLCYPLESVVAFPAYLCYDMG-RINHRCKMYVWLR 548
             +VKR P  ++ + + ++KK +++   + +PLE++V+ P    Y +  R   RC +   L 
Sbjct:   348 MVKRYPQCIDYTAETVKKKTEFIVKNMNWPLEALVSIPQVFGYSLEKRTVPRCNVIKTLI 407

Query:   549 ERGVAKPTLS---LSTILACSDAKFEKYFVDVH 578
              +G+ K       +S++L  +D  F + +V  H
Sbjct:   408 SKGLMKDGSEAPPMSSVLTSTDQAFLRRYVMKH 440

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2172798 AT5G23930 "AT5G23930" [Arabidopsis thaliana (taxid:3702)]

 Score = 131 (51.2 bits), Expect = 1.6e-06, Sum P(2) = 1.6e-06
 Identities = 37/148 (25%), Positives = 74/148 (50%)

Query:   438 VEKTEFLLRLGYVENSEEVTKALKQFR---GRGDQ-LQERFDCLVQAGLDSNVVRNIVKR 493
             ++K E L R+G  +  EEV   +K++    G  ++ + +     ++ G   + V  I+KR
Sbjct:   291 IQKFETLKRVGLTK--EEVCLVVKKYPECVGTSEEKIVKSVKTFLELGFTKDEVLMIIKR 348

Query:   494 APMVLNQSKDVLEKKIDYLKNYLCYPLESVVAFPAYLCYDMGR-INHRCKMYVWLRERGV 552
              P  +  + D ++KK ++L   + +PL+ V + P  L + + + +  RC +   L   G+
Sbjct:   349 HPQCIGLAADSVKKKTEFLVKTMGWPLKVVASTPIVLGFSLEKFVLPRCNVIKALMSNGL 408

Query:   553 AKPTLSLSTILACSDAKFEKYFVDVHPE 580
                  ++S++L     KF K FV+ H +
Sbjct:   409 IGEMPAISSVLTSPKLKFLKLFVEKHQD 436

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

UNIPROTKB|F1P3M7 MTERFD1 "mTERF domain-containing protein 1, mitochondrial" [Gallus gallus (taxid:9031)]

 Score = 135 (52.6 bits), Expect = 1.0e-05, P = 1.0e-05
 Identities = 69/307 (22%), Positives = 134/307 (43%)

Query:   277 NWDQVSETLDFLYKIGYNE-VQLLNLFKTNPALVFEGSGQKVYV----LFGRLLKLGLKM 331
             +WD V  +   L +I   E V+++     +P L  + S  + YV       +L+ LG+ +
Sbjct:   100 DWDDVPPS-SALEEISEEEAVKII----ADPLLPPQSSTLRDYVDHSETLTKLVHLGVDL 154

Query:   332 NEVYSLFSQNPQILSSKFVKNLLQAVGFLIEIGMGMKDISNMVLMHAELMGSCSLKGPKT 391
             ++V         +L+  F K++ + + FL ++G+    +   +  +  ++G   L+  +T
Sbjct:   155 SQVEKRQKAGQLLLTLDFEKDITKILLFLKDVGIEDNQLGPFLTKNPYILGE-DLEALET 213

Query:   392 VCSKLK---VGRESLCQIIKDDP-LKLFHLASKTEVKIDEQVDCQNPSKDVEKTEFLLRL 447
               + LK    G   + Q++   P L LF +      ++D ++          K E  L L
Sbjct:   214 RVAYLKSKKFGNAEITQMVSRAPYLLLFSVE-----RLDNRLG-------FFKNE--LGL 259

Query:   448 GYVENSEEVTKALKQFRGRGDQLQERFD-CLVQAGLDSNVVRNIVKRAPMVLNQSKDVLE 506
                +  + V +  +   G+ + ++E    C V+ G + N V+ I  + P +L  SK  L 
Sbjct:   260 SVKKTKDLVIRFPRLLTGKLEPVKENLQVCQVEFGFERNEVQQIAFKTPKILTASKKRLR 319

Query:   507 KKIDYLKNYLCYPLESVVAFPAYLCYDMGRINHRCKMYVWL--RERGVAKPT-LSLSTIL 563
             +  DYL N +  P   +  FP      + RI  R    ++L   +    KP+ +SL  ++
Sbjct:   320 QTFDYLHNIMGIPHNMLTRFPQVFNSKLLRIKERHMFLIFLGRAQYDPTKPSYISLDQLV 379

Query:   564 ACSDAKF 570
             +  D  F
Sbjct:   380 SLPDEVF 386

GO:0005739 "mitochondrion" evidence=IEA

GO:0044212 "transcription regulatory region DNA binding" evidence=IEA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	595
pfam02536	345	pfam02536, mTERF, mTERF	6e-14
PLN03196	487	PLN03196, PLN03196, MOC1-like protein; Provisional	2e-10

>gnl|CDD|217090 pfam02536, mTERF, mTERF

 Score = 72.9 bits (179), Expect = 6e-14
 Identities = 67/313 (21%), Positives = 122/313 (38%), Gaps = 29/313 (9%)

Query: 285 LDFLYKIGYNEVQLLNLFKTNPALVFEGSGQK---VYVLFGRLLKLGLKMNEVYSLFSQN 341
           L FL   G ++ +L  +  T P  +    G K       F  L K+ +   +  S   + 
Sbjct: 37  LQFLQSRGASKSELTKIVSTVPK-ILGKKGVKSISSVYDF--LKKIIVADLDKSSKLEKY 93

Query: 342 PQILSSKFVKNLLQAVGFLIEIGMGMKD-----------ISNMVLMHAELMGSCSLKGPK 390
           P+ L      N ++ V  L E+G+  K            +    +    L     +    
Sbjct: 94  PESLPQGNNGNKIRNVSVLRELGVPPKLLFSLLISRPRPVCGKEVFEESLKKVVEMGFDP 153

Query: 391 TVCSKLKVGRESLCQIIKDDPLK--LFHLAS-KTEVKIDEQVDCQNPS-------KDVEK 440
           T   ++   R  L     D  +K  +  L S    V+    +  + P        K ++ 
Sbjct: 154 TTFKRVIAKRPRLLLYSSDKTIKPNVEFLKSLGFSVEDVWAILKKCPELLGSSEKKKLQT 213

Query: 441 TEFLLRLGYVENSEEVTKALKQFRGRGDQLQERFDCLVQAGLDSNVVRNIVKRAPMVLNQ 500
            E L   G +E    + K  +       ++  + + L+  G     +  +VKR P +L  
Sbjct: 214 QEILKTCGLLEFLSVIKKMPQFVSYSEQKILNKIEFLLGLGFSREEIAKMVKRCPQLLGL 273

Query: 501 SKDVLEKKIDYLKNYLCYPLESVVAFPAYLCYDM-GRINHRCKMYVWLRERGVAKPTLSL 559
           S + ++KK ++L   + +PL+ +V FP    Y +  RI  RC +   L  +G +    SL
Sbjct: 274 SVEKVKKKTEFLVKEMNWPLKELVEFPQVFGYSLEKRIKPRCNVVKALMSKGKSI-LPSL 332

Query: 560 STILACSDAKFEK 572
           S++L C+D +F +
Sbjct: 333 SSMLKCTDEEFLQ 345

This family contains one sequence of known function Human mitochondrial transcription termination factor (mTERF) the rest of the family consists of hypothetical proteins none of which have any functional information. mTERF is a multizipper protein possessing three putative leucine zippers one of which is bipartite. The protein binds DNA as a monomer. The leucine zippers are not implicated in a dimerisation role as in other leucine zippers. Length = 345

>gnl|CDD|215628 PLN03196, PLN03196, MOC1-like protein; Provisional

 Score = 62.8 bits (153), Expect = 2e-10
 Identities = 55/260 (21%), Positives = 114/260 (43%), Gaps = 36/260 (13%)

Query: 324 LLKLGLKMNEVYSLFSQNPQILSSKFVKNLLQAVGFLIEIGMGMKDISNMVLMHAELMG- 382
           L+ +G+   ++  + ++ P+IL  +   N+   V +L  +G+    ++ ++     ++G 
Sbjct: 203 LVSIGVAPRDIGPMLTRFPEILGMRVGNNIKPKVDYLESLGLPRLAVARILEKRPYILGF 262

Query: 383 --SCSLKGPKTVC-SKLKVGRESLCQIIKD------DPLKLFHLASKTEVKIDEQVDCQN 433
               ++K P   C  +  V +E+L  +I          LK      +  +    ++D ++
Sbjct: 263 DLEETVK-PNVECLLEFGVRKEALPSVIAQYPDILGLDLKAKLAEQQYWLTSKLKIDPED 321

Query: 434 PSKDVEKTEFLLRLGYVENSEEVTKALKQFRGRGDQLQERFDCLVQAGLDSNVVRNIVKR 493
             + +EK   ++ L           ALK             + L   G  +  V  +V R
Sbjct: 322 FGRVIEKLPQIVSLNR-------NVALK-----------HVEFLRGRGFSAQDVAKMVVR 363

Query: 494 APMVLNQSKDVLEKKIDYLKNYLCYPLESVVAFPAYLCYDM-GRINHRCKMYVWLRERGV 552
            P +L  + ++++  +++ K  +  PL+ +V FPAY  Y +  RI  R +    + ++G+
Sbjct: 364 CPQILALNLEIMKPSLEFFKKEMKRPLKELVEFPAYFTYGLESRIKPRYER---VAKKGI 420

Query: 553 AKPTLSLSTILACSDAKFEK 572
                SL+  L CSD KFE+
Sbjct: 421 ---KCSLAWFLNCSDDKFEQ 437

Length = 487

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	595
PLN03196	487	MOC1-like protein; Provisional	100.0
PF02536	345	mTERF: mTERF; InterPro: IPR003690 This family curr	100.0
PLN03196	487	MOC1-like protein; Provisional	100.0
PF02536	345	mTERF: mTERF; InterPro: IPR003690 This family curr	100.0
KOG1267	413	consensus Mitochondrial transcription termination	99.96
KOG1267	413	consensus Mitochondrial transcription termination	99.81
smart00733	31	Mterf Mitochondrial termination factor repeats. Hu	97.01
smart00733	31	Mterf Mitochondrial termination factor repeats. Hu	96.58
PF11955	335	PORR: Plant organelle RNA recognition domain; Inte	94.63
cd04790	172	HTH_Cfa-like_unk Helix-Turn-Helix DNA binding doma	83.36

>PLN03196 MOC1-like protein; Provisional

Probab=100.00  E-value=1.1e-60  Score=521.56  Aligned_cols=371  Identities=20%  Similarity=0.327  Sum_probs=335.0

Q ss_pred             HHHHCCCCcCCCccccCccccccCCcchhhhHHHHHhhcCCCcchHHHHHHhcccccccC-chhhHHHHHHHHHCCCChH
Q 007621          150 FFESLGLSQSELSPLLPRHLMFLSDDEVLLDNFHVLCDYGIPRSKMGKMYVEATEIFRHD-RGVLASKLWAYENLGLSKN  228 (595)
Q Consensus       150 fl~slGls~~~l~~ll~~~~l~~s~d~~l~p~~~~L~~~g~s~~~i~~~~k~~p~ll~~~-~~~l~~~l~~L~~lGls~~  228 (595)
                      ||+++|++++++..+..|     +.-..+.+.++||+++|++.+++.    ++|++|+++ .+++.|+++||+++|++..
T Consensus        69 ~L~~lgi~~~~l~~~~~p-----~~~~~~~~~l~~L~s~G~~~~~i~----~~P~iL~~~v~~~l~Pvl~fL~~lG~s~~  139 (487)
T PLN03196         69 FLRGIGIDPDELDGLELP-----STVDVMRERVEFLHKLGLTIEDIN----EYPLVLGCSVKKNMIPVLDYLEKLGVTRS  139 (487)
T ss_pred             HHHHcCCCchhhhccCCC-----ccHHHHHHHHHHHHHcCCChHHhc----cCcHHhhcCHhhhhHHHHHHHHHcCCCHH
Confidence            999999999999876443     222478999999999999999997    689999999 7899999999999999999


Q ss_pred             HHHHHHHhCCcceecCccchHHHHHHHHHHcCCCCcccccccCCCCCCChhhhHHHHHHHHhcCCCHHHHHHHHHhCCCc
Q 007621          229 TVIKLVSCCPSLLIGGVDSRFVKVLEKLKELGFKNDWIGRYLPGKGSYNWDQVSETLDFLYKIGYNEVQLLNLFKTNPAL  308 (595)
Q Consensus       229 ~I~klv~~~P~lL~~~~~~~l~~~v~~L~~lGv~~~~~~~~l~~~~~~~~~~~~~~l~~l~~lG~s~~~I~~lv~~~P~i  308 (595)
                      +|++++.++|.+|.++++.++.|++++|++                                +|+++++|.+++.++|++
T Consensus       140 ~i~~lI~~~P~lL~~sve~~L~P~v~fL~~--------------------------------lGvs~~~i~~~l~r~P~L  187 (487)
T PLN03196        140 SLPELLRRYPQVLHASVVVDLAPVVKYLQG--------------------------------LDVKRQDIPRVLERYPEL  187 (487)
T ss_pred             HHHHHHHhCCceecccHHHHHHHHHHHHHH--------------------------------cCCCHHHHHHHHHhCchh
Confidence            999999999999999999889998776655                                899999999999999999


Q ss_pred             cccCchhhHHHHHHHHHHcCCChhHHHHHHhhCCceeeccccccHHHHHHHHHHhCCChhhHHHHHHhcCcccccc---c
Q 007621          309 VFEGSGQKVYVLFGRLLKLGLKMNEVYSLFSQNPQILSSKFVKNLLQAVGFLIEIGMGMKDISNMVLMHAELMGSC---S  385 (595)
Q Consensus       309 L~~~~e~~l~~~v~fL~~lGl~~~~i~~~I~~~P~lL~~sle~~l~p~~~fL~~~Gl~~~~I~~il~~~P~lL~~s---~  385 (595)
                      |+++.++++.++++||.++|++.++++++|.++|++|+++++++++|+++||+++|++.++|++++.++|++|+++   +
T Consensus       188 L~~~~e~~l~p~v~fL~~lGvs~~~i~~il~~~P~iL~~sve~~i~P~v~fL~~lGv~~~~I~~il~~~P~iL~~sle~~  267 (487)
T PLN03196        188 LGFKLEGTMSTSVAYLVSIGVAPRDIGPMLTRFPEILGMRVGNNIKPKVDYLESLGLPRLAVARILEKRPYILGFDLEET  267 (487)
T ss_pred             hcCCHHHHHHHHHHHHHHcCCCHHHHHHHHHhCcHHhhcChhhhHHHHHHHHHHcCCCHHHHHHHHHhCCceeEcCHHHh
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999996   6


Q ss_pred             ccchHHHHHhcCCChhHHHHHHHhCCcccccccccchhhcccccccCCCCchHHHHHHH-HHcCCCCChh-HHHH-HHHH
Q 007621          386 LKGPKTVCSKLKVGRESLCQIIKDDPLKLFHLASKTEVKIDEQVDCQNPSKDVEKTEFL-LRLGYVENSE-EVTK-ALKQ  462 (595)
Q Consensus       386 lk~~i~~L~~lGv~~~~l~~lI~~~P~~L~~~~~~~~~~~~l~~s~~~~~~~~~k~~fl-~~lGf~~~~~-~~~~-al~~  462 (595)
                      +++++++|+++|++++.++.+|..+|.++..               ...+++..+++|+ .++|++++.- .++. .+..
T Consensus       268 lkp~v~~L~elGv~~~~i~~lI~~~P~iL~~---------------s~e~kl~~~~~fL~~~lG~s~e~i~~~v~k~P~i  332 (487)
T PLN03196        268 VKPNVECLLEFGVRKEALPSVIAQYPDILGL---------------DLKAKLAEQQYWLTSKLKIDPEDFGRVIEKLPQI  332 (487)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHhCCceeEe---------------cHHHhhhHHHHHHHHhhCCCHHHHHHHHHhcchh
Confidence            8999999999999999999999999999851               1123567788888 5799987653 2333 3333


Q ss_pred             hhcChhHHHHHHHHHHHhCCCHHHHHHHHHhCCcccccChHHHHHHHHHHHHHhCCChHHHhhcCcccccccc-cccchH
Q 007621          463 FRGRGDQLQERFDCLVQAGLDSNVVRNIVKRAPMVLNQSKDVLEKKIDYLKNYLCYPLESVVAFPAYLCYDMG-RINHRC  541 (595)
Q Consensus       463 ~~~~~~~l~~r~~~L~~~G~s~~ev~~mi~~~P~iL~~s~e~L~~k~~fL~~~mg~~~~~l~~~P~~L~~sle-ri~pR~  541 (595)
                      +..+.++|++|++||+++||+.+||..||+++|++|++|+++|++|++||+++||++.++|++||+||+||+| ||+|||
T Consensus       333 l~lSe~kl~~kvefL~~~Gls~edI~~mv~k~P~lL~~S~~~l~~k~dFlvneMg~~~~~Iv~fP~~LsySLEkRI~PR~  412 (487)
T PLN03196        333 VSLNRNVALKHVEFLRGRGFSAQDVAKMVVRCPQILALNLEIMKPSLEFFKKEMKRPLKELVEFPAYFTYGLESRIKPRY  412 (487)
T ss_pred             hcccHHHHHHHHHHHHHcCCCHHHHHHHHHhCCceeeccHHHHHHHHHHHHHHhCCCHHHHHhChHHhccChhhhhHHHH
Confidence            3445569999999999999999999999999999999999999999999999999999999999999999999 999999


Q ss_pred             HHHHHHHHcCCCCCCCCcccccccChHHHHHHHhhhCCChH
Q 007621          542 KMYVWLRERGVAKPTLSLSTILACSDAKFEKYFVDVHPEGP  582 (595)
Q Consensus       542 ~~~~~L~~kgl~~~~~~l~~il~~sek~F~~~~v~~~~~~~  582 (595)
                      ++   |+++|+   +++++++++|||++|+++|+..|.|+.
T Consensus       413 ~~---L~~kGl---~~sL~~~L~~sd~~F~~r~v~~y~e~~  447 (487)
T PLN03196        413 ER---VAKKGI---KCSLAWFLNCSDDKFEQRMSGDFIEGE  447 (487)
T ss_pred             HH---HHHcCC---CCCHHHHhccCHHHHHHHHhhhccccc
Confidence            75   889998   689999999999999999999997653

>PF02536 mTERF: mTERF; InterPro: IPR003690 This family currently contains one sequence of known function human mitochondrial transcription termination factor (mTERF), a multizipper protein but binds to DNA as a monomer, with evidence pointing to intramolecular leucine zipper interactions []

Probab=100.00  E-value=9.7e-50  Score=422.20  Aligned_cols=338  Identities=26%  Similarity=0.426  Sum_probs=223.8

Q ss_pred             HHHhhcCCCcchHHHHHHhcccccccC-chhhHHHHHHHHHCCCChHHHHHHHHhCCcceecCccchHHHHHHHHHHcCC
Q 007621          183 HVLCDYGIPRSKMGKMYVEATEIFRHD-RGVLASKLWAYENLGLSKNTVIKLVSCCPSLLIGGVDSRFVKVLEKLKELGF  261 (595)
Q Consensus       183 ~~L~~~g~s~~~i~~~~k~~p~ll~~~-~~~l~~~l~~L~~lGls~~~I~klv~~~P~lL~~~~~~~l~~~v~~L~~lGv  261 (595)
                      ++++++|+++.+|.++++++|.++.++ ++++.|+++||++.|++..+|++++..+|.+|..+.++++.|.++++++   
T Consensus         2 ~~~~~~gf~~~~i~~~i~~~P~~l~~~~~~~l~pk~~fl~s~G~s~~~i~~il~~~P~il~~s~~~~i~p~~~~L~~---   78 (345)
T PF02536_consen    2 DLLKNHGFSDSQISKLIRRYPRLLLCDPEKTLLPKLEFLRSLGFSSSDIAKILSKNPQILSRSLEKNIIPVFDFLKS---   78 (345)
T ss_dssp             HHHHHHHHHTS-HHHHHH-H-HHHHT-SS-HHHHHHHHHHHTT--HHHHHHHHHH-GGGGGS--HHHHHHHHHHHTT---
T ss_pred             hHHHHcCCCHHHHHHHHHhCCceEEecCccchhHHHHHHHHCCCCHHHHHHHHHhChHHHhccchhhHHHHHHHHHH---
Confidence            467777777777777777777777777 6777788888877888877888888888888777766667666655544   


Q ss_pred             CCcccccccCCCCCCChhhhHHHHHHHHhcCCCHHHHHHHHHhCCCccccCchhhHHHHHHHHHHcCCChhHHHHHHhhC
Q 007621          262 KNDWIGRYLPGKGSYNWDQVSETLDFLYKIGYNEVQLLNLFKTNPALVFEGSGQKVYVLFGRLLKLGLKMNEVYSLFSQN  341 (595)
Q Consensus       262 ~~~~~~~~l~~~~~~~~~~~~~~l~~l~~lG~s~~~I~~lv~~~P~iL~~~~e~~l~~~v~fL~~lGl~~~~i~~~I~~~  341 (595)
                                                   +|.+++|+.+++.++|++|..+.++++.+.++||.++|++.+.+.+++..+
T Consensus        79 -----------------------------~~~s~~d~~~~l~r~p~~l~~~~~~~l~~~v~~L~~lGv~~~~~~~~l~~~  129 (345)
T PF02536_consen   79 -----------------------------IGLSDEDIVKVLKRYPRILSFSVEENLSPNVAFLRSLGVPPSQIISLLISR  129 (345)
T ss_dssp             -----------------------------TSS-HHHHHHHHHH-SHHHHS---HHHHHHHHHHHHTT--HHHHHHHHHH-
T ss_pred             -----------------------------HcCCHHHHHHHHHhcchhhccchHhhhhhhhhHHhhcCCcHHHHHHHHHhc
Confidence                                         677777777777777777766666677777777777777776666777766


Q ss_pred             CceeeccccccHHHHHHHHHHhCCChhhHHHHHHhcCcccccc---cccchHHHHHhcCCChhHHHHHHHhCCccccccc
Q 007621          342 PQILSSKFVKNLLQAVGFLIEIGMGMKDISNMVLMHAELMGSC---SLKGPKTVCSKLKVGRESLCQIIKDDPLKLFHLA  418 (595)
Q Consensus       342 P~lL~~sle~~l~p~~~fL~~~Gl~~~~I~~il~~~P~lL~~s---~lk~~i~~L~~lGv~~~~l~~lI~~~P~~L~~~~  418 (595)
                      |.++...  .++.+.+++|.++|++.+++.+++.++|+++...   .+++++++|+++|++.+++.+++.++|.++.   
T Consensus       130 ~~~~~~~--~~~~~~v~~l~~lG~~~~~~~~vi~~~P~~l~~~~~~~~~~~v~~L~~~G~~~~~i~~~l~~~P~~l~---  204 (345)
T PF02536_consen  130 PPLFLSS--EKIKERVEFLKELGFDPEKIGRVIAKNPRLLLSDSESELKPKVEFLRSLGFSKEDIGKLLRKCPRLLS---  204 (345)
T ss_dssp             CHHHHS---HHHHCHHHHHCCCTSSHHHHCCCHHHHHHHHCGSCCCCCHHHHHHHHHCTT-GHHHHHHHHHTTTGGG---
T ss_pred             Cccccch--hHHHHHHHHHHHhCCCchhhcccccccchhhccccHHHHHHHHHHHHhhcccchhhhHHhhcccceec---
Confidence            6655544  5677777777777777777777777777555442   4677777777777777777777777777774   


Q ss_pred             ccchhhcccccccCCCCchHHHHHHHHHcCCCCChhHHHHHHHHh-hcChhHHHHHHHHHHHhCCCHHHHHHHHHhCCcc
Q 007621          419 SKTEVKIDEQVDCQNPSKDVEKTEFLLRLGYVENSEEVTKALKQF-RGRGDQLQERFDCLVQAGLDSNVVRNIVKRAPMV  497 (595)
Q Consensus       419 ~~~~~~~~l~~s~~~~~~~~~k~~fl~~lGf~~~~~~~~~al~~~-~~~~~~l~~r~~~L~~~G~s~~ev~~mi~~~P~i  497 (595)
                                   .+.++..+....+.+.|..++. ++......+ ....++++++++||.++||+.+||+.|++++|+|
T Consensus       205 -------------~s~~~~l~~~~~l~~~~~~~~~-~~i~~~p~il~~~~~~l~~~i~~L~~lG~s~~ei~~mv~~~P~i  270 (345)
T PF02536_consen  205 -------------LSVEKILEPVLYLLSSGGVEEE-RVIKKFPQILSLSEEKLKPKIEFLQSLGFSEEEIAKMVRRFPQI  270 (345)
T ss_dssp             -------------CGCHC----------------------------THHHHHHHHHHHHHHTTT--HHHHHHHHHHSGGG
T ss_pred             -------------cccccccccccccccccccccc-ccccccccccccchHhHHHHHHHHHHhcCcHHHHHHHHHhCcch
Confidence                         1223333344444444444333 333333222 3334589999999999999999999999999999


Q ss_pred             cccChHHHHHHHHHHHHHhCCChHHHhhcCcccccccc-cccchHHHHHHHHHcCCCCCCCCcccccccChHHHHH
Q 007621          498 LNQSKDVLEKKIDYLKNYLCYPLESVVAFPAYLCYDMG-RINHRCKMYVWLRERGVAKPTLSLSTILACSDAKFEK  572 (595)
Q Consensus       498 L~~s~e~L~~k~~fL~~~mg~~~~~l~~~P~~L~~sle-ri~pR~~~~~~L~~kgl~~~~~~l~~il~~sek~F~~  572 (595)
                      |++|.++|++|++||+++||++.++|+++|+||+||+| ||+|||+++++|+++|+ +..+++.+++.+||++|++
T Consensus       271 L~~s~e~l~~k~~fl~~~m~~~~~~i~~~P~~l~~sLe~ri~PR~~~~~~l~~~g~-~~~~sl~~~l~~s~~~F~~  345 (345)
T PF02536_consen  271 LSYSIEKLKPKFEFLVKEMGLPLEEIVEFPQYLSYSLEKRIKPRYEVLKVLKSKGL-IINPSLSSMLSCSDEEFLK  345 (345)
T ss_dssp             GGS-HHHHHHHHHHHHHCCT--HHHHHHSCHHHCS-HHHHHHHHHHHHHTT--TTT-GGGGGS-HHHHHHHHHHT-
T ss_pred             hhcchhhhhHHHHHHHHHhCcCHHHHhhCCceeEechhhhhhhHHHHHHHHHHCcC-CCCCCHHHHhhccHHHhcC
Confidence            99999999999999999999999999999999999999 99999999999999997 6789999999999999974

The precursors contain a mitochondrial targeting sequence, and the mature mTERF exhibits three leucine zippers, of which one is bipartite, and two widely spaced basic domains. Both basic domains and the three leucine zipper motifs are necessary for DNA binding. The leucine zippers are not implicated in a dimerisation role as in other leucine zippers []. The rest of the family consists of hypothetical proteins none of which have any functional information.; PDB: 3M66_A 3OPG_A 3MVA_O 3MVB_O 3N7Q_A 3N6S_A.

>PLN03196 MOC1-like protein; Provisional

Probab=100.00  E-value=2e-44  Score=393.90  Aligned_cols=364  Identities=13%  Similarity=0.212  Sum_probs=315.2

Q ss_pred             HHHHHHHHHHHHHhcCCCCHHHHHHHhccCchHH------HHHHhcCC-CchhHHhhhccccccCccccchh---HHHHC
Q 007621           85 RTEAQEVLFDYLHSTRSLGYMDAEHISKNSPDFV------LNLLSKID-SGKDVTRSLMRFLRYNPINEFEP---FFESL  154 (595)
Q Consensus        85 ~~~a~~~~~~YL~~tcgLs~~~A~~~Sk~sP~~v------~~lL~~~~-s~~~v~~~~p~~L~~~p~~~l~p---fl~sl  154 (595)
                      ..+....+.+||. +-|+....+++.-  -|..|      .+||+++| +.+|+. +.|.+|.++|++++.|   ||+++
T Consensus        59 ~~~~~~~~~~~L~-~lgi~~~~l~~~~--~p~~~~~~~~~l~~L~s~G~~~~~i~-~~P~iL~~~v~~~l~Pvl~fL~~l  134 (487)
T PLN03196         59 KLVNREKVLDFLR-GIGIDPDELDGLE--LPSTVDVMRERVEFLHKLGLTIEDIN-EYPLVLGCSVKKNMIPVLDYLEKL  134 (487)
T ss_pred             hhhhHHHHHHHHH-HcCCCchhhhccC--CCccHHHHHHHHHHHHHcCCChHHhc-cCcHHhhcCHhhhhHHHHHHHHHc
Confidence            5566778899995 5999998886643  34444      48999999 888887 6899999999999998   99999


Q ss_pred             CCCcCCCccccC--ccccccCCcchhhhHHHHHhhcCCCcchHHHHHHhcccccccC-chhhHHHHHHHHHCCCChHHHH
Q 007621          155 GLSQSELSPLLP--RHLMFLSDDEVLLDNFHVLCDYGIPRSKMGKMYVEATEIFRHD-RGVLASKLWAYENLGLSKNTVI  231 (595)
Q Consensus       155 Gls~~~l~~ll~--~~~l~~s~d~~l~p~~~~L~~~g~s~~~i~~~~k~~p~ll~~~-~~~l~~~l~~L~~lGls~~~I~  231 (595)
                      |++.+++++++.  |.+|..+.++++.|+++||+++|++++++++++.++|++|+++ ++.+.|+++||+++|++..+|+
T Consensus       135 G~s~~~i~~lI~~~P~lL~~sve~~L~P~v~fL~~lGvs~~~i~~~l~r~P~LL~~~~e~~l~p~v~fL~~lGvs~~~i~  214 (487)
T PLN03196        135 GVTRSSLPELLRRYPQVLHASVVVDLAPVVKYLQGLDVKRQDIPRVLERYPELLGFKLEGTMSTSVAYLVSIGVAPRDIG  214 (487)
T ss_pred             CCCHHHHHHHHHhCCceecccHHHHHHHHHHHHHHcCCCHHHHHHHHHhCchhhcCCHHHHHHHHHHHHHHcCCCHHHHH
Confidence            999999998877  8888888889999999999999999999999999999999999 7889999999999999999999


Q ss_pred             HHHHhCCcceecCccchHHHHHHHHHHcCCCCcccccccCCCCCCChhhhHHHHHHHHhcCCCHHHHHHHHHhCCCcccc
Q 007621          232 KLVSCCPSLLIGGVDSRFVKVLEKLKELGFKNDWIGRYLPGKGSYNWDQVSETLDFLYKIGYNEVQLLNLFKTNPALVFE  311 (595)
Q Consensus       232 klv~~~P~lL~~~~~~~l~~~v~~L~~lGv~~~~~~~~l~~~~~~~~~~~~~~l~~l~~lG~s~~~I~~lv~~~P~iL~~  311 (595)
                      +++.++|++|+.++++++.|.+++|++                                +|++.++|++++.++|++|++
T Consensus       215 ~il~~~P~iL~~sve~~i~P~v~fL~~--------------------------------lGv~~~~I~~il~~~P~iL~~  262 (487)
T PLN03196        215 PMLTRFPEILGMRVGNNIKPKVDYLES--------------------------------LGLPRLAVARILEKRPYILGF  262 (487)
T ss_pred             HHHHhCcHHhhcChhhhHHHHHHHHHH--------------------------------cCCCHHHHHHHHHhCCceeEc
Confidence            999999999999999888887776654                                889999999999999999998


Q ss_pred             CchhhHHHHHHHHHHcCCChhHHHHHHhhCCceeeccccccHHHHHHHH-HHhCCChhhHHHHHHhcCcccccc--cccc
Q 007621          312 GSGQKVYVLFGRLLKLGLKMNEVYSLFSQNPQILSSKFVKNLLQAVGFL-IEIGMGMKDISNMVLMHAELMGSC--SLKG  388 (595)
Q Consensus       312 ~~e~~l~~~v~fL~~lGl~~~~i~~~I~~~P~lL~~sle~~l~p~~~fL-~~~Gl~~~~I~~il~~~P~lL~~s--~lk~  388 (595)
                      +.+++++|+++||.++|++.++++.+|.++|.++++++++++.|++.|| +++|++.+++.+++.++|++++.+  .+++
T Consensus       263 sle~~lkp~v~~L~elGv~~~~i~~lI~~~P~iL~~s~e~kl~~~~~fL~~~lG~s~e~i~~~v~k~P~il~lSe~kl~~  342 (487)
T PLN03196        263 DLEETVKPNVECLLEFGVRKEALPSVIAQYPDILGLDLKAKLAEQQYWLTSKLKIDPEDFGRVIEKLPQIVSLNRNVALK  342 (487)
T ss_pred             CHHHhHHHHHHHHHHcCCCHHHHHHHHHhCCceeEecHHHhhhHHHHHHHHhhCCCHHHHHHHHHhcchhhcccHHHHHH
Confidence            8888999999999999999999999999999999999999999999998 689999999999999999999886  5788


Q ss_pred             hHHHHHhcCCChhHHHHHHHhCCcccccccccchhhcccccccCCCCchHHHHHHHHHcCCCCChhHHHHHHHHhhcChh
Q 007621          389 PKTVCSKLKVGRESLCQIIKDDPLKLFHLASKTEVKIDEQVDCQNPSKDVEKTEFLLRLGYVENSEEVTKALKQFRGRGD  468 (595)
Q Consensus       389 ~i~~L~~lGv~~~~l~~lI~~~P~~L~~~~~~~~~~~~l~~s~~~~~~~~~k~~fl~~lGf~~~~~~~~~al~~~~~~~~  468 (595)
                      +++||+++|++.++++.++.++|++|.             .                                    +.+
T Consensus       343 kvefL~~~Gls~edI~~mv~k~P~lL~-------------~------------------------------------S~~  373 (487)
T PLN03196        343 HVEFLRGRGFSAQDVAKMVVRCPQILA-------------L------------------------------------NLE  373 (487)
T ss_pred             HHHHHHHcCCCHHHHHHHHHhCCceee-------------c------------------------------------cHH
Confidence            999999999999999999999999985             1                                    125


Q ss_pred             HHHHHHHHHH-HhCCCHHHHHHHHHhCCcccccChH-HHHHHHHHHHHHhCCChHHHhhcCcccccccccccchHH
Q 007621          469 QLQERFDCLV-QAGLDSNVVRNIVKRAPMVLNQSKD-VLEKKIDYLKNYLCYPLESVVAFPAYLCYDMGRINHRCK  542 (595)
Q Consensus       469 ~l~~r~~~L~-~~G~s~~ev~~mi~~~P~iL~~s~e-~L~~k~~fL~~~mg~~~~~l~~~P~~L~~sleri~pR~~  542 (595)
                      +++++++||+ ++|++.++|    .++|.+|+||.| +|+|++++|.+ -|+..    .-..+|.+|-++..-|+.
T Consensus       374 ~l~~k~dFlvneMg~~~~~I----v~fP~~LsySLEkRI~PR~~~L~~-kGl~~----sL~~~L~~sd~~F~~r~v  440 (487)
T PLN03196        374 IMKPSLEFFKKEMKRPLKEL----VEFPAYFTYGLESRIKPRYERVAK-KGIKC----SLAWFLNCSDDKFEQRMS  440 (487)
T ss_pred             HHHHHHHHHHHHhCCCHHHH----HhChHHhccChhhhhHHHHHHHHH-cCCCC----CHHHHhccCHHHHHHHHh
Confidence            7899999999 899998875    699999999975 99999999987 48732    223567777667777764

>PF02536 mTERF: mTERF; InterPro: IPR003690 This family currently contains one sequence of known function human mitochondrial transcription termination factor (mTERF), a multizipper protein but binds to DNA as a monomer, with evidence pointing to intramolecular leucine zipper interactions []

Probab=100.00  E-value=5.1e-39  Score=340.30  Aligned_cols=308  Identities=20%  Similarity=0.335  Sum_probs=227.6

Q ss_pred             HHHHhcCC-Cchh---HHhhhccccccCccccchh---HHHHCCCCcCCCccccC--ccccccCCcchhhhHHHHHhhcC
Q 007621          119 LNLLSKID-SGKD---VTRSLMRFLRYNPINEFEP---FFESLGLSQSELSPLLP--RHLMFLSDDEVLLDNFHVLCDYG  189 (595)
Q Consensus       119 ~~lL~~~~-s~~~---v~~~~p~~L~~~p~~~l~p---fl~slGls~~~l~~ll~--~~~l~~s~d~~l~p~~~~L~~~g  189 (595)
                      ++++++|| ++++   ++++.|++|.++|++++.|   ||.|+|++.+++++++.  |.++.++.++++.|+++||+++|
T Consensus         1 ~~~~~~~gf~~~~i~~~i~~~P~~l~~~~~~~l~pk~~fl~s~G~s~~~i~~il~~~P~il~~s~~~~i~p~~~~L~~~~   80 (345)
T PF02536_consen    1 EDLLKNHGFSDSQISKLIRRYPRLLLCDPEKTLLPKLEFLRSLGFSSSDIAKILSKNPQILSRSLEKNIIPVFDFLKSIG   80 (345)
T ss_dssp             -HHHHHHHHHTS-HHHHHH-H-HHHHT-SS-HHHHHHHHHHHTT--HHHHHHHHHH-GGGGGS--HHHHHHHHHHHTTTS
T ss_pred             ChHHHHcCCCHHHHHHHHHhCCceEEecCccchhHHHHHHHHCCCCHHHHHHHHHhChHHHhccchhhHHHHHHHHHHHc
Confidence            36889999 6665   6778899999999999999   99999999999999988  99999999999999999999999


Q ss_pred             CCcchHHHHHHhcccccccC-chhhHHHHHHHHHCCCChHHHHHHHHhCCcceecCccchHHHHHHHHHHcCCCCccccc
Q 007621          190 IPRSKMGKMYVEATEIFRHD-RGVLASKLWAYENLGLSKNTVIKLVSCCPSLLIGGVDSRFVKVLEKLKELGFKNDWIGR  268 (595)
Q Consensus       190 ~s~~~i~~~~k~~p~ll~~~-~~~l~~~l~~L~~lGls~~~I~klv~~~P~lL~~~~~~~l~~~v~~L~~lGv~~~~~~~  268 (595)
                      ++++++++++.++|++|..+ .+++.+|+++|+++|++.+.+.+++...|..+...  .++.+.++++            
T Consensus        81 ~s~~d~~~~l~r~p~~l~~~~~~~l~~~v~~L~~lGv~~~~~~~~l~~~~~~~~~~--~~~~~~v~~l------------  146 (345)
T PF02536_consen   81 LSDEDIVKVLKRYPRILSFSVEENLSPNVAFLRSLGVPPSQIISLLISRPPLFLSS--EKIKERVEFL------------  146 (345)
T ss_dssp             S-HHHHHHHHHH-SHHHHS---HHHHHHHHHHHHTT--HHHHHHHHHH-CHHHHS---HHHHCHHHHH------------
T ss_pred             CCHHHHHHHHHhcchhhccchHhhhhhhhhHHhhcCCcHHHHHHHHHhcCccccch--hHHHHHHHHH------------
Confidence            99999999999999999987 56999999999999999998999999999877666  3466655544            


Q ss_pred             ccCCCCCCChhhhHHHHHHHHhcCCCHHHHHHHHHhCCCccccCchhhHHHHHHHHHHcCCChhHHHHHHhhCCceeecc
Q 007621          269 YLPGKGSYNWDQVSETLDFLYKIGYNEVQLLNLFKTNPALVFEGSGQKVYVLFGRLLKLGLKMNEVYSLFSQNPQILSSK  348 (595)
Q Consensus       269 ~l~~~~~~~~~~~~~~l~~l~~lG~s~~~I~~lv~~~P~iL~~~~e~~l~~~v~fL~~lGl~~~~i~~~I~~~P~lL~~s  348 (595)
                                          .++|++++++.+++.++|.++...++++++++++||.+.|++.+++.+++.++|.++..+
T Consensus       147 --------------------~~lG~~~~~~~~vi~~~P~~l~~~~~~~~~~~v~~L~~~G~~~~~i~~~l~~~P~~l~~s  206 (345)
T PF02536_consen  147 --------------------KELGFDPEKIGRVIAKNPRLLLSDSESELKPKVEFLRSLGFSKEDIGKLLRKCPRLLSLS  206 (345)
T ss_dssp             --------------------CCCTSSHHHHCCCHHHHHHHHCGSCCCCCHHHHHHHHHCTT-GHHHHHHHHHTTTGGGCG
T ss_pred             --------------------HHhCCCchhhcccccccchhhccccHHHHHHHHHHHHhhcccchhhhHHhhcccceeccc
Confidence                                458999999999999999888878899999999999999999999999999999999999


Q ss_pred             ccccHHHHHHHHHHhCCChhhHHHHHHhcCcccccc--cccchHHHHHhcCCChhHHHHHHHhCCcccccccccchhhcc
Q 007621          349 FVKNLLQAVGFLIEIGMGMKDISNMVLMHAELMGSC--SLKGPKTVCSKLKVGRESLCQIIKDDPLKLFHLASKTEVKID  426 (595)
Q Consensus       349 le~~l~p~~~fL~~~Gl~~~~I~~il~~~P~lL~~s--~lk~~i~~L~~lGv~~~~l~~lI~~~P~~L~~~~~~~~~~~~  426 (595)
                      .++.+.+...++...|...+   .++.++|.+++++  .+++++++|+++|++.+++++|+.++|++|.           
T Consensus       207 ~~~~l~~~~~l~~~~~~~~~---~~i~~~p~il~~~~~~l~~~i~~L~~lG~s~~ei~~mv~~~P~iL~-----------  272 (345)
T PF02536_consen  207 VEKILEPVLYLLSSGGVEEE---RVIKKFPQILSLSEEKLKPKIEFLQSLGFSEEEIAKMVRRFPQILS-----------  272 (345)
T ss_dssp             CHC------------------------------THHHHHHHHHHHHHHTTT--HHHHHHHHHHSGGGGG-----------
T ss_pred             cccccccccccccccccccc---ccccccccccccchHhHHHHHHHHHHhcCcHHHHHHHHHhCcchhh-----------
Confidence            99888777666666555544   8889999999886  5889999999999999999999999999995           


Q ss_pred             cccccCCCCchHHHHHHHHHcCCCCChhHHHHHHHHhhcChhHHHHHHHHHH-HhCCCHHHHHHHHHhCCcccccChH-H
Q 007621          427 EQVDCQNPSKDVEKTEFLLRLGYVENSEEVTKALKQFRGRGDQLQERFDCLV-QAGLDSNVVRNIVKRAPMVLNQSKD-V  504 (595)
Q Consensus       427 l~~s~~~~~~~~~k~~fl~~lGf~~~~~~~~~al~~~~~~~~~l~~r~~~L~-~~G~s~~ev~~mi~~~P~iL~~s~e-~  504 (595)
                        .                                    ..++++++++||. ++|++.++|    .++|.+|+||.| +
T Consensus       273 --~------------------------------------s~e~l~~k~~fl~~~m~~~~~~i----~~~P~~l~~sLe~r  310 (345)
T PF02536_consen  273 --Y------------------------------------SIEKLKPKFEFLVKEMGLPLEEI----VEFPQYLSYSLEKR  310 (345)
T ss_dssp             --S-------------------------------------HHHHHHHHHHHHHCCT--HHHH----HHSCHHHCS-HHHH
T ss_pred             --c------------------------------------chhhhhHHHHHHHHHhCcCHHHH----hhCCceeEechhhh
Confidence              1                                    1246899999999 899999886    489999999985 7


Q ss_pred             HHHH---HHHHHHHhC
Q 007621          505 LEKK---IDYLKNYLC  517 (595)
Q Consensus       505 L~~k---~~fL~~~mg  517 (595)
                      |+|+   +++|.+ .|
T Consensus       311 i~PR~~~~~~l~~-~g  325 (345)
T PF02536_consen  311 IKPRYEVLKVLKS-KG  325 (345)
T ss_dssp             HHHHHHHHHTT---TT
T ss_pred             hhhHHHHHHHHHH-Cc
Confidence            9999   666655 46

The precursors contain a mitochondrial targeting sequence, and the mature mTERF exhibits three leucine zippers, of which one is bipartite, and two widely spaced basic domains. Both basic domains and the three leucine zipper motifs are necessary for DNA binding. The leucine zippers are not implicated in a dimerisation role as in other leucine zippers []. The rest of the family consists of hypothetical proteins none of which have any functional information.; PDB: 3M66_A 3OPG_A 3MVA_O 3MVB_O 3N7Q_A 3N6S_A.

>KOG1267 consensus Mitochondrial transcription termination factor, mTERF [Transcription; General function prediction only]

Probab=99.96  E-value=6e-29  Score=269.18  Aligned_cols=331  Identities=25%  Similarity=0.373  Sum_probs=262.8

Q ss_pred             HHHHHHHHhcCCCCHHHHHHHhcc-------CchHHHHHHhcCC-Cchh---HHhhhccccccCccccchh---HHHHCC
Q 007621           90 EVLFDYLHSTRSLGYMDAEHISKN-------SPDFVLNLLSKID-SGKD---VTRSLMRFLRYNPINEFEP---FFESLG  155 (595)
Q Consensus        90 ~~~~~YL~~tcgLs~~~A~~~Sk~-------sP~~v~~lL~~~~-s~~~---v~~~~p~~L~~~p~~~l~p---fl~slG  155 (595)
                      .+...|++.++|++...|..+++.       .|+++.++|.++| ++++   ++...|++|.+++++.+.|   ++.+.|
T Consensus        59 ~f~~s~~~~s~~~~~~~~~~~~~~~~~~~~~~p~s~~~~l~s~g~~~~~i~s~i~~~p~ll~~~~~~~l~~~~~~l~~~g  138 (413)
T KOG1267|consen   59 NFESSYLVDSLGLSIKLARKLSREVSSEDSVNPSSVLSSLRSLGFTDSQISSIILSSPKLLYLSSENILKPKLRLLDSLG  138 (413)
T ss_pred             CcceeeeccccccchhhHHHHHHHHHhhhccCcHHHHHHHHhcCCchhhcccccccCchhhhccchhhhhhhhhhhhccC
Confidence            778899999999999999999864       6999999999999 6555   5555589999999999998   778899


Q ss_pred             CCcCCCccccC--ccccccCCcchhhhHHHHHhhcC--CCcchHHHHHHhcccccccC-c-hhhHHHHHHHHHCCCChHH
Q 007621          156 LSQSELSPLLP--RHLMFLSDDEVLLDNFHVLCDYG--IPRSKMGKMYVEATEIFRHD-R-GVLASKLWAYENLGLSKNT  229 (595)
Q Consensus       156 ls~~~l~~ll~--~~~l~~s~d~~l~p~~~~L~~~g--~s~~~i~~~~k~~p~ll~~~-~-~~l~~~l~~L~~lGls~~~  229 (595)
                      ++.+++.+++.  |.++..+.+.++.+.++|+.+++  .....+.+..   +.+.... . ..+. ++++++++|.++.+
T Consensus       139 ~~~s~l~~i~s~~~~il~~~~~~~~~~~~~~l~~~~~~~~~s~~~~~~---~~~~~~~~~~~~v~-~~~~~~~lg~~~~~  214 (413)
T KOG1267|consen  139 LPSSELSSIVSVVPKILLKSKGESLSTFIEFLKSIPPELLSSVVERLL---TPVPSFLLNENSVE-RLDIRRELGVKPRL  214 (413)
T ss_pred             ccccccchhhhccHHHHHhhcCCchhhHHHHhhccchhhhhhHHHHhc---cccccccccccccc-cchhhHHhCCCHHH
Confidence            99999998877  46677777788899999999985  4444444444   3344222 2 3344 88999999999999


Q ss_pred             HHHHHHhCCcceecCccchHHHHHHHHHHcCCCCcccccccCCCCCCChhhhHHHHHHHHhcCCCHHHHHHHHHhCCCcc
Q 007621          230 VIKLVSCCPSLLIGGVDSRFVKVLEKLKELGFKNDWIGRYLPGKGSYNWDQVSETLDFLYKIGYNEVQLLNLFKTNPALV  309 (595)
Q Consensus       230 I~klv~~~P~lL~~~~~~~l~~~v~~L~~lGv~~~~~~~~l~~~~~~~~~~~~~~l~~l~~lG~s~~~I~~lv~~~P~iL  309 (595)
                      +..++..+|.+.....  .+...+.++.++|++|.                                .  +++.+.|.++
T Consensus       215 L~~~l~~~~~~~~~~~--~l~~~~~~i~~~g~~p~--------------------------------~--~~~v~~~~~~  258 (413)
T KOG1267|consen  215 LKSLLESQPRPVLLYL--KLKARLPFLLTLGFDPK--------------------------------T--REFVKAPILL  258 (413)
T ss_pred             HHHHHhcCccceeeeh--hhhhhhhhHHHhccCCc--------------------------------h--hHHHhhhhhh
Confidence            9999998888887653  25555555555544443                                3  6777888888


Q ss_pred             ccCchhhHHHHHHHHHHcCCChhHHHHHHhhCCceeeccccccHHHHHHHHHHhCCChhhHHHHHHhcCcccccccccch
Q 007621          310 FEGSGQKVYVLFGRLLKLGLKMNEVYSLFSQNPQILSSKFVKNLLQAVGFLIEIGMGMKDISNMVLMHAELMGSCSLKGP  389 (595)
Q Consensus       310 ~~~~e~~l~~~v~fL~~lGl~~~~i~~~I~~~P~lL~~sle~~l~p~~~fL~~~Gl~~~~I~~il~~~P~lL~~s~lk~~  389 (595)
                      .+.++++|++++++|...|++.+|++.++.++|.+|+++.++ +..++.|+...   .++    +.++|+++.+      
T Consensus       259 ~~~~~~~i~~kv~~l~~~Gf~~~di~~~~~k~P~~l~~s~~~-~~~~~~~~~~~---~~~----~~k~p~~l~~------  324 (413)
T KOG1267|consen  259 SYSSEKTLEPKVEVLKSLGFSREEIWKMVKKCPQILGYSVKK-NLKTTEYLLKN---PKH----ILKFPQLLRS------  324 (413)
T ss_pred             cccccccHHHHHHHHHHcCCCHHHHHHHHHhCchheEeehhh-hhHHHHHHHhc---chh----hhhhhhhhhc------
Confidence            888888888888888888888888888888888888888764 45566665444   222    4455554422      


Q ss_pred             HHHHHhcCCChhHHHHHHHhCCcccccccccchhhcccccccCCCCchHHHHHHHHHcCCCCChhHHHHHHHHhhcChhH
Q 007621          390 KTVCSKLKVGRESLCQIIKDDPLKLFHLASKTEVKIDEQVDCQNPSKDVEKTEFLLRLGYVENSEEVTKALKQFRGRGDQ  469 (595)
Q Consensus       390 i~~L~~lGv~~~~l~~lI~~~P~~L~~~~~~~~~~~~l~~s~~~~~~~~~k~~fl~~lGf~~~~~~~~~al~~~~~~~~~  469 (595)
                                                                                                  .+..
T Consensus       325 ----------------------------------------------------------------------------s~~~  328 (413)
T KOG1267|consen  325 ----------------------------------------------------------------------------SEDK  328 (413)
T ss_pred             ----------------------------------------------------------------------------cchh
Confidence                                                                                        1236


Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHhCCcccccChH-HHHHHHHHHHHHhCCChHHHhhcCcccccccc-cccchHHHHHHH
Q 007621          470 LQERFDCLVQAGLDSNVVRNIVKRAPMVLNQSKD-VLEKKIDYLKNYLCYPLESVVAFPAYLCYDMG-RINHRCKMYVWL  547 (595)
Q Consensus       470 l~~r~~~L~~~G~s~~ev~~mi~~~P~iL~~s~e-~L~~k~~fL~~~mg~~~~~l~~~P~~L~~sle-ri~pR~~~~~~L  547 (595)
                      ++++++|+...|++..|+..|++++|+++.+|.+ .++.+.+|+.+.|+++.+.++.+|++++|++| |+.||+.++.++
T Consensus       329 l~~~ie~l~~~g~~~~q~~~~~~~~Pq~l~~s~~~~~~~~~~~~~~~~~~p~~~~~~~p~~~~y~le~ri~pr~~~~~~~  408 (413)
T KOG1267|consen  329 LKPRIEFLLSLGFSDVQILEMVKRFPQYLSFSLEKILKRKYEYLLKGLLRPLSALVSFPAFFGYSLEKRIRPRFNVIKKL  408 (413)
T ss_pred             hhhhHHHHHHcCCcHHHHHHHHhhccHHhhhhHHhhhhhhHHHHHHHcCchHHHHhccchhhccchhhcchhHHHHHHHH
Confidence            7889999999999999999999999999999998 99999999999999999999999999999999 999999988777


Q ss_pred             HHc
Q 007621          548 RER  550 (595)
Q Consensus       548 ~~k  550 (595)
                      ..+
T Consensus       409 ~~~  411 (413)
T KOG1267|consen  409 GVK  411 (413)
T ss_pred             hcc
Confidence            554

>KOG1267 consensus Mitochondrial transcription termination factor, mTERF [Transcription; General function prediction only]

Probab=99.81  E-value=1.2e-19  Score=196.60  Aligned_cols=241  Identities=21%  Similarity=0.296  Sum_probs=201.6

Q ss_pred             hhHHHHHHHHhcCCCHHHHHHHHHhCCCccccCchhhHHHHHHHHHHcCCChhHHHHHHhhCCceeeccccccHHHHHHH
Q 007621          280 QVSETLDFLYKIGYNEVQLLNLFKTNPALVFEGSGQKVYVLFGRLLKLGLKMNEVYSLFSQNPQILSSKFVKNLLQAVGF  359 (595)
Q Consensus       280 ~~~~~l~~l~~lG~s~~~I~~lv~~~P~iL~~~~e~~l~~~v~fL~~lGl~~~~i~~~I~~~P~lL~~sle~~l~p~~~f  359 (595)
                      +...++++|+++|+++.+|..++..+|.++..+.++-+.++..+|...|.+..++..++...|.+|..+.+.++.+.++|
T Consensus        90 ~p~s~~~~l~s~g~~~~~i~s~i~~~p~ll~~~~~~~l~~~~~~l~~~g~~~s~l~~i~s~~~~il~~~~~~~~~~~~~~  169 (413)
T KOG1267|consen   90 NPSSVLSSLRSLGFTDSQISSIILSSPKLLYLSSENILKPKLRLLDSLGLPSSELSSIVSVVPKILLKSKGESLSTFIEF  169 (413)
T ss_pred             CcHHHHHHHHhcCCchhhcccccccCchhhhccchhhhhhhhhhhhccCccccccchhhhccHHHHHhhcCCchhhHHHH
Confidence            44568899999999999999999999999999999999999989999999999999999999999999998999999999


Q ss_pred             HHHhC--CChhhHHHHHHhcCccccc-ccccchHHHHHhcCCChhHHHHHHHhCCcccccccccchhhcccccccCCCCc
Q 007621          360 LIEIG--MGMKDISNMVLMHAELMGS-CSLKGPKTVCSKLKVGRESLCQIIKDDPLKLFHLASKTEVKIDEQVDCQNPSK  436 (595)
Q Consensus       360 L~~~G--l~~~~I~~il~~~P~lL~~-s~lk~~i~~L~~lGv~~~~l~~lI~~~P~~L~~~~~~~~~~~~l~~s~~~~~~  436 (595)
                      |+.++  .....+.+.+...|..... +.++ ++++++++|+.+..+..++..+|+....                 ...
T Consensus       170 l~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~-~~~~~~~lg~~~~~L~~~l~~~~~~~~~-----------------~~~  231 (413)
T KOG1267|consen  170 LKSIPPELLSSVVERLLTPVPSFLLNENSVE-RLDIRRELGVKPRLLKSLLESQPRPVLL-----------------YLK  231 (413)
T ss_pred             hhccchhhhhhHHHHhccccccccccccccc-cchhhHHhCCCHHHHHHHHhcCccceee-----------------ehh
Confidence            99985  5555666666555543333 3456 9999999999999999999999999851                 115


Q ss_pred             hHHHHHHHHHcCCCCChhHHHHHHHHhhcChh-HHHHHHHHHHHhCCCHHHHHHHHHhCCcccccChHHHHHHHHHHHHH
Q 007621          437 DVEKTEFLLRLGYVENSEEVTKALKQFRGRGD-QLQERFDCLVQAGLDSNVVRNIVKRAPMVLNQSKDVLEKKIDYLKNY  515 (595)
Q Consensus       437 ~~~k~~fl~~lGf~~~~~~~~~al~~~~~~~~-~l~~r~~~L~~~G~s~~ev~~mi~~~P~iL~~s~e~L~~k~~fL~~~  515 (595)
                      +..++.++..+||++.+.++++|...+.+..+ ++++++++|.+.||+.+||..|++++|++|++|++++..+++|+.+.
T Consensus       232 l~~~~~~i~~~g~~p~~~~~v~~~~~~~~~~~~~i~~kv~~l~~~Gf~~~di~~~~~k~P~~l~~s~~~~~~~~~~~~~~  311 (413)
T KOG1267|consen  232 LKARLPFLLTLGFDPKTREFVKAPILLSYSSEKTLEPKVEVLKSLGFSREEIWKMVKKCPQILGYSVKKNLKTTEYLLKN  311 (413)
T ss_pred             hhhhhhhHHHhccCCchhHHHhhhhhhcccccccHHHHHHHHHHcCCCHHHHHHHHHhCchheEeehhhhhHHHHHHHhc
Confidence            67788999999999999999999999877655 99999999999999999999999999999999999766666666664


Q ss_pred             hCCChHHHhhcCcccccccccccchHH
Q 007621          516 LCYPLESVVAFPAYLCYDMGRINHRCK  542 (595)
Q Consensus       516 mg~~~~~l~~~P~~L~~sleri~pR~~  542 (595)
                          .+++.++|++++++.+.+.+|+.
T Consensus       312 ----~~~~~k~p~~l~~s~~~l~~~ie  334 (413)
T KOG1267|consen  312 ----PKHILKFPQLLRSSEDKLKPRIE  334 (413)
T ss_pred             ----chhhhhhhhhhhccchhhhhhHH
Confidence                22255666666555556666654

>smart00733 Mterf Mitochondrial termination factor repeats

Probab=97.01  E-value=0.00061  Score=44.90  Aligned_cols=30  Identities=33%  Similarity=0.617  Sum_probs=27.4

Q ss_pred             HHHHhCCcccccChHHHHHHHHHHHHHhCCC
Q 007621          489 NIVKRAPMVLNQSKDVLEKKIDYLKNYLCYP  519 (595)
Q Consensus       489 ~mi~~~P~iL~~s~e~L~~k~~fL~~~mg~~  519 (595)
                      .++.++|.+|++++++|+++++||. ++|++
T Consensus         2 ~~~~~~P~il~~~~~~l~~~~~~l~-~~g~~   31 (31)
T smart00733        2 KILKKFPQILGYSEKKLKPKVEFLK-ELGFS   31 (31)
T ss_pred             chhhhCcCcccccHHHhhHHHHHHH-HcCCC
Confidence            4789999999999999999999999 79975

Human mitochondrial termination factor is a DNA-binding protein that acts as a transcription termination factor. Six repeats occur in human mTERF, that also are present in numerous plant proteins.

>smart00733 Mterf Mitochondrial termination factor repeats

Probab=96.58  E-value=0.0014  Score=43.08  Aligned_cols=28  Identities=39%  Similarity=0.592  Sum_probs=17.0

Q ss_pred             HHhhCCceeeccccccHHHHHHHHHHhCC
Q 007621          337 LFSQNPQILSSKFVKNLLQAVGFLIEIGM  365 (595)
Q Consensus       337 ~I~~~P~lL~~sle~~l~p~~~fL~~~Gl  365 (595)
                      ++.++|.+|+++ ++++.|+++||+++|+
T Consensus         3 ~~~~~P~il~~~-~~~l~~~~~~l~~~g~   30 (31)
T smart00733        3 ILKKFPQILGYS-EKKLKPKVEFLKELGF   30 (31)
T ss_pred             hhhhCcCccccc-HHHhhHHHHHHHHcCC
Confidence            455666666666 5566666666666654

Human mitochondrial termination factor is a DNA-binding protein that acts as a transcription termination factor. Six repeats occur in human mTERF, that also are present in numerous plant proteins.

>PF11955 PORR: Plant organelle RNA recognition domain; InterPro: IPR021099 The plant organelle RNA recognition (PORR) domain, previously known as DUF860, is a component of group II intron ribonucleoprotein particles in maize chloroplasts

Probab=94.63  E-value=0.35  Score=51.13  Aligned_cols=236  Identities=14%  Similarity=0.101  Sum_probs=131.3

Q ss_pred             hcCCCHHHHHHHHHhCCCccccCch-------hhHHHHHHHHHH----c-CCChhHHHHHHhhCCceeeccccccHH-HH
Q 007621          290 KIGYNEVQLLNLFKTNPALVFEGSG-------QKVYVLFGRLLK----L-GLKMNEVYSLFSQNPQILSSKFVKNLL-QA  356 (595)
Q Consensus       290 ~lG~s~~~I~~lv~~~P~iL~~~~e-------~~l~~~v~fL~~----l-Gl~~~~i~~~I~~~P~lL~~sle~~l~-p~  356 (595)
                      .+|+....+...+.++|.|+.....       =.+-+...-|..    + .-...++..-+   =.+|..|.+++|. ..
T Consensus        46 ~L~l~~~~~~~flrkyP~iF~~~~~~~~~~~~~~LT~~a~~L~~eE~~~~~~~e~~~v~rL---~KLLMMS~~~rlpL~k  122 (335)
T PF11955_consen   46 QLGLKPRKVSRFLRKYPSIFEVFQHPSRSVPWFRLTPEAEDLLREERRVREEMEPDLVERL---RKLLMMSKDRRLPLSK  122 (335)
T ss_pred             hcCCCcccHHHHHHhCCceEEEeccCCCCCceEEeCHHHHHHHHHHHHHHHhChHHHHHHH---HHHhccCCCCcccHHH
Confidence            5888778899999999999875320       012222222221    1 11122332222   3467777776653 23


Q ss_pred             HHHH-HHhCCChhhHHHHHHhcCcccccccccch------HHHHHhcCCChhHHHHHHH----hCCcccccccccchhhc
Q 007621          357 VGFL-IEIGMGMKDISNMVLMHAELMGSCSLKGP------KTVCSKLKVGRESLCQIIK----DDPLKLFHLASKTEVKI  425 (595)
Q Consensus       357 ~~fL-~~~Gl~~~~I~~il~~~P~lL~~s~lk~~------i~~L~~lGv~~~~l~~lI~----~~P~~L~~~~~~~~~~~  425 (595)
                      +..+ .++|++++-...++.+||..|........      +.+=-++.++.-+-.....    ........++--  +. 
T Consensus       123 i~~l~~dLGLP~Df~~~lv~~yP~~Frvv~~~~~~~~LeLv~Wd~~LAvs~~E~~~~~~~~~~~~~~~~~~~~Fp--~~-  199 (335)
T PF11955_consen  123 IAHLRRDLGLPDDFRDSLVPKYPDYFRVVDLEDGGRYLELVSWDPELAVSALEKRAEKEYREKREDGFDRPLAFP--VS-  199 (335)
T ss_pred             HHHHHHHcCCChhhccchhhhCCCCcEEeecCCCCCEEEEeecCCccCcCccchhhhhccccccccccCCceeee--ec-
Confidence            4556 58999999889999999998876321111      1111123332211111110    000000000000  00 


Q ss_pred             ccccccCCCCchHHHHHHHHHc----------CCCCChhHHH-HHHHHhhc-----Chh-HHHHHHHHHH-HhCCCHHHH
Q 007621          426 DEQVDCQNPSKDVEKTEFLLRL----------GYVENSEEVT-KALKQFRG-----RGD-QLQERFDCLV-QAGLDSNVV  487 (595)
Q Consensus       426 ~l~~s~~~~~~~~~k~~fl~~l----------Gf~~~~~~~~-~al~~~~~-----~~~-~l~~r~~~L~-~~G~s~~ev  487 (595)
                       .+....-.....++++-.+++          |+++++.++. +|+.+++-     .++ ...+++..|+ ++|++ +.+
T Consensus       200 -fp~G~~l~k~~~~~l~~fQ~lPy~SPYed~~~l~~~s~~~EKRaVaVlHElLSLTveKr~~~~~L~~fr~ef~lp-~k~  277 (335)
T PF11955_consen  200 -FPKGFRLKKKFREWLEEFQKLPYISPYEDASHLDPGSDEAEKRAVAVLHELLSLTVEKRTEVDHLTHFRKEFGLP-QKF  277 (335)
T ss_pred             -CCCCccccHHHHHHHHHHhcCCCCCCCCCccCCCCCChHHHhHHHHHHHHHHHhhhhhhccHHHHHHHHHHhCCc-HHH
Confidence             111111223456667777765          5677777777 67777762     334 6788999999 99999 468


Q ss_pred             HHHHHhCCcccccChHHHHHHHHHHHHHhCCChHH-HhhcCcccccccccccchHH
Q 007621          488 RNIVKRAPMVLNQSKDVLEKKIDYLKNYLCYPLES-VVAFPAYLCYDMGRINHRCK  542 (595)
Q Consensus       488 ~~mi~~~P~iL~~s~e~L~~k~~fL~~~mg~~~~~-l~~~P~~L~~sleri~pR~~  542 (595)
                      ..|+.++|.|+..|... ..-.=||++  +|...+ |..+|.+      .++-|+.
T Consensus       278 ~~~l~rHPgIFYvS~kg-~~~TVfLrE--AY~~~~Liek~Pl~------~~r~k~~  324 (335)
T PF11955_consen  278 RRLLLRHPGIFYVSLKG-KRHTVFLRE--AYDGGELIEKHPLV------VIREKFL  324 (335)
T ss_pred             HHHHHhCCCeEEEeccC-CceEEEEee--ccCCCCCCCCCchH------HHHHHHH
Confidence            99999999999999752 122235665  455555 4567877      6666663

It is required for the splicing of the introns with which it associates, and promotes splicing in the context of a heterodimer with the RNase III-domain protein RNC1. Proteins containing this domain are predicted to localise to mitochondria or chloroplasts []. It seems likely that most PORR proteins function in organellar RNA metabolism [].

>cd04790 HTH_Cfa-like_unk Helix-Turn-Helix DNA binding domain of putative Cfa-like transcription regulators

Probab=83.36  E-value=5.8  Score=37.89  Aligned_cols=23  Identities=9%  Similarity=0.241  Sum_probs=17.4

Q ss_pred             hhHHHHHhhcCCCcchHHHHHHh
Q 007621          179 LDNFHVLCDYGIPRSKMGKMYVE  201 (595)
Q Consensus       179 ~p~~~~L~~~g~s~~~i~~~~k~  201 (595)
                      +..+..|++.|++-+.|..++..
T Consensus        48 L~~I~~lr~~G~sL~eI~~ll~~   70 (172)
T cd04790          48 LEQICAYRSAGVSLEDIRSLLQQ   70 (172)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHhc
Confidence            34577788888888888887754

Putative helix-turn-helix (HTH) MerR-like transcription regulator; conserved, Cfa-like, unknown proteins (~172 a.a.). The N-terminal domain of these proteins appears to be related to the HTH domain of Cfa, a cyclopropane fatty acid synthase. These Cfa-like proteins have a unique C-terminal domain with conserved histidines (motif HXXFX7HXXF). Based on sequence similarity of the N-terminal domains, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domain

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	595
3m66_A	270	Mterf3, mterf domain-containing protein 1, mitocho	7e-38
3m66_A	270	Mterf3, mterf domain-containing protein 1, mitocho	2e-13
3m66_A	270	Mterf3, mterf domain-containing protein 1, mitocho	2e-09
3mva_O	343	Transcription termination factor, mitochondrial; a	3e-27
3mva_O	343	Transcription termination factor, mitochondrial; a	4e-11
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-14

>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A Length = 270

 Score =  140 bits (354), Expect = 7e-38
 Identities = 44/278 (15%), Positives = 105/278 (37%), Gaps = 30/278 (10%)

Query: 324 LLKLGLKMNEVYSLFSQNPQILSSKFVKNLLQAVGFLIEIGMGMKDISNMVLMHAELMGS 383
           L+ LG+ ++++         +L   F K++ Q + FL ++G+    +   +  +  +  S
Sbjct: 12  LVLLGVDLSKIEKHPEAANLLLRLDFEKDIKQMLLFLKDVGIEDNQLGAFLTKNHAIF-S 70

Query: 384 CSLKGPKTVCSKLK---VGRESLCQIIKDDPLKLFHLASKTEVKIDEQVDCQNPSKDVEK 440
             L+  KT  + L      +  + Q+++  P  L                  +  +   +
Sbjct: 71  EDLENLKTRVAYLHSKNFSKADVAQMVRKAPFLL----------------NFSVERLDNR 114

Query: 441 TEFLLR---LGYVENSEEVTKALKQFRGRGDQLQERFD-CLVQAGLDSNVVRNIVKRAPM 496
             F  +   L   +  + V +  +   G  + ++E      ++ G   N +++++ R P 
Sbjct: 115 LGFFQKELELSVKKTRDLVVRLPRLLTGSLEPVKENMKVYRLELGFKHNEIQHMITRIPK 174

Query: 497 VLNQSKDVLEKKIDYLKNYLCYPLESVVAFPAYLCYDMGRINHRCKMYVWLRERGV---A 553
           +L  +K  L +  D++ N +  P   +V FP      + ++  R     +L         
Sbjct: 175 MLTANKMKLTETFDFVHNVMSIPHHIIVKFPQVFNTRLFKVKERHLFLTYLGRAQYDPAK 234

Query: 554 KPTLSLSTILACSDAKFEKYFVDVHPEGPAMWESLKKS 591
              +SL  +++  D  F +       +    +E   K+
Sbjct: 235 PNYISLDKLVSIPDEIFCEEIAKASVQD---FEKFLKT 269

>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A Length = 270

 Score = 69.5 bits (170), Expect = 2e-13
 Identities = 31/192 (16%), Positives = 75/192 (39%), Gaps = 8/192 (4%)

Query: 185 LCDYGIPRSKMGKMYVEATEIFRHDRG-VLASKLWAYENLGLSKNTVIKLVSCCPSLLIG 243
           L   G+  SK+ K    A  + R D    +   L   +++G+  N +   ++   ++   
Sbjct: 12  LVLLGVDLSKIEKHPEAANLLLRLDFEKDIKQMLLFLKDVGIEDNQLGAFLTKNHAIFSE 71

Query: 244 GVDSRFVKVLEKLKELGFKNDWIGRYL---PGKGSYNWDQVSETLDFLYK-IGYNEVQLL 299
            ++      +  L    F    + + +   P   +++ +++   L F  K +  +  +  
Sbjct: 72  DLE-NLKTRVAYLHSKNFSKADVAQMVRKAPFLLNFSVERLDNRLGFFQKELELSVKKTR 130

Query: 300 NLFKTNPALVFEGSGQKVYVLFGRLLKLGLKMNEVYSLFSQNPQILSSKFVKNLLQAVGF 359
           +L    P L+          +    L+LG K NE+  + ++ P++L++     L +   F
Sbjct: 131 DLVVRLPRLLTGSLEPVKENMKVYRLELGFKHNEIQHMITRIPKMLTAN-KMKLTETFDF 189

Query: 360 LI-EIGMGMKDI 370
           +   + +    I
Sbjct: 190 VHNVMSIPHHII 201

>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A Length = 270

 Score = 58.3 bits (141), Expect = 2e-09
 Identities = 32/183 (17%), Positives = 63/183 (34%), Gaps = 10/183 (5%)

Query: 252 VLEKLKELGFKNDWIGRYL---PGKGSYNWD-QVSETLDFLYKIGYNEVQLLNLFKTNPA 307
            L+KL  LG     I ++          +++  + + L FL  +G  + QL      N A
Sbjct: 8   TLQKLVLLGVDLSKIEKHPEAANLLLRLDFEKDIKQMLLFLKDVGIEDNQLGAFLTKNHA 67

Query: 308 LVFEGSGQKVYVLFGRLLKLGLKMNEVYSLFSQNPQILSSKFVKNLLQAVGFLI-EIGMG 366
           + F    + +      L        +V  +  + P +L+   V+ L   +GF   E+ + 
Sbjct: 68  I-FSEDLENLKTRVAYLHSKNFSKADVAQMVRKAPFLLNFS-VERLDNRLGFFQKELELS 125

Query: 367 MKDISNMVLMHAELMGSCSLKGPKTVCSKLK---VGRESLCQIIKDDPLKLFHLASKTEV 423
           +K   ++V+    L+        + +             +  +I   P  L     K   
Sbjct: 126 VKKTRDLVVRLPRLLTGSLEPVKENMKVYRLELGFKHNEIQHMITRIPKMLTANKMKLTE 185

Query: 424 KID 426
             D
Sbjct: 186 TFD 188

>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A* Length = 343

 Score =  112 bits (280), Expect = 3e-27
 Identities = 53/334 (15%), Positives = 108/334 (32%), Gaps = 25/334 (7%)

Query: 251 KVLEKLKELGFKNDWIGRYLPGKGSYNWDQVSETLDFLYKIGYNEVQLLNLFKTNPALVF 310
            +L+ L  +G   D   +  PG          +   FL   G ++  + ++    P  + 
Sbjct: 21  DLLKNLLTMGVDIDMARKRQPGVFHRMITNEQDLKMFLLSKGASKEVIASIISRYPRAIT 80

Query: 311 EGSGQKVYVLFGRLLKLGLKMNEVYSLFSQNPQIL-SSKFVKNLLQAVGFLIEIGMGMKD 369
             + + +   +    K+     E+ ++  ++P+    S    NL   + FL  +G+  K 
Sbjct: 81  R-TPENLSKRWDLWRKIVTSDLEIVNILERSPESFFRSNNNLNLENNIKFLYSVGLTRKC 139

Query: 370 ISNMVLMHAELMGSCSLKGPKTVCSKLKVGRESLCQIIKDDPLKLFHLASKTEVKIDEQV 429
           +  ++        +             K   E L                +  +  +  +
Sbjct: 140 LCRLLTNAPRTFSNS--------LDLNKQMVEFLQAAGLSLGHNDPADFVRKIIFKNPFI 191

Query: 430 DCQNPSKDVEKTEFLLRLGYVENSEEVTKALKQFRGRGDQLQERF---------DCLVQA 480
             Q+  +     EFL       NSEE+   +         L   +         + L   
Sbjct: 192 LIQSTKRVKANIEFLRSTF-NLNSEELLVLICGPGAEILDLSNDYARRSYANIKEKLFSL 250

Query: 481 GLDSNVVRNIVKRAPMVLNQSKDVLEKKIDYLKNYLCYPLESVVAFPAYLCYDMGRINHR 540
           G     V+  V   P V+  ++     KID L       +  ++  P  L   +  +  R
Sbjct: 251 GCTEEEVQKFVLSYPDVIFLAEKKFNDKIDCLME-ENISISQIIENPRVLDSSISTLKSR 309

Query: 541 CKMYVWLRERGVAKPTLSLSTILACSDAKFEKYF 574
            K    L   G    TL+++ +L+ S  ++E   
Sbjct: 310 IKE---LVNAGCNLSTLNIT-LLSWSKKRYEAKL 339

>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A* Length = 343

 Score = 63.9 bits (155), Expect = 4e-11
 Identities = 49/381 (12%), Positives = 97/381 (25%), Gaps = 86/381 (22%)

Query: 140 RYNPINEFEPFFESLGLSQSELSPLLPRHLMFLSDDEVLLDNFHVLCDYGIPRSKMGKMY 199
                 +      ++G+         P             D    L   G  +  +  + 
Sbjct: 15  EPLKNEDLLKNLLTMGVDIDMARKRQPGVF--HRMITNEQDLKMFLLSKGASKEVIASII 72

Query: 200 VEATEIFRHDRGVLASKLWAYENLGLSKNTVIKLVSCCPSLLIGGVDSRFVK-VLEKLKE 258
                        L+ +   +  +  S   ++ ++   P       ++  ++  ++ L  
Sbjct: 73  SRYPRAITRTPENLSKRWDLWRKIVTSDLEIVNILERSPESFFRSNNNLNLENNIKFLYS 132

Query: 259 LGFKNDWIGRYL---PGKGSYNWDQVSETLDFLYKIGYNEVQLLNLFKTNPALVFEGSGQ 315
           +G     + R L   P   S + D   + ++FL   G +                     
Sbjct: 133 VGLTRKCLCRLLTNAPRTFSNSLDLNKQMVEFLQAAGLSL-------------------- 172

Query: 316 KVYVLFGRLLKLGLKMNEVYSLFSQNPQILSSKFVKNLLQAVGFLIEIGMGMKDISNMVL 375
                           + V  +  +NP IL     K +   + FL              L
Sbjct: 173 ----------GHNDPADFVRKIIFKNPFILIQS-TKRVKANIEFLRST---------FNL 212

Query: 376 MHAELMGSCSLKGPKTVCSKLKVGRESLCQIIKDDPLKLFHLASKTEVKIDEQVDCQNPS 435
              EL+      G + +       R S                                 
Sbjct: 213 NSEELLVLICGPGAEILDLSNDYARRSY-------------------------------- 240

Query: 436 KDVEKTEFLLRLGYVEN--SEEVTKALKQFRGRGDQLQERFDCLVQAGLDSNVVRNIVKR 493
                 E L  LG  E    + V            +  ++ DCL++  +  + +      
Sbjct: 241 --ANIKEKLFSLGCTEEEVQKFVLSYPDVIFLAEKKFNDKIDCLMEENISISQII----E 294

Query: 494 APMVLNQSKDVLEKKIDYLKN 514
            P VL+ S   L+ +I  L N
Sbjct: 295 NPRVLDSSISTLKSRIKELVN 315

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 76.4 bits (187), Expect = 1e-14
 Identities = 92/585 (15%), Positives = 177/585 (30%), Gaps = 136/585 (23%)

Query: 89  QEVLFDYLHSTRSLGYMDAEHISKNSPDFVLNLLSK------IDSGKDVTRSLMRF--LR 140
           +++L  +  +       D + +     D   ++LSK      I S   V+ +L  F  L 
Sbjct: 19  KDILSVFEDAFVD--NFDCKDV----QDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLL 72

Query: 141 YNPINEFEPFFESL----------GLSQSELSPLLPRHLMFLSDDEVLLDNFHVLCDYGI 190
                  + F E +           +   +  P +    M++   + L ++  V   Y +
Sbjct: 73  SKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTR-MYIEQRDRLYNDNQVFAKYNV 131

Query: 191 PRSKMGKMYVEATEIFRHDRGV------------LASK-LWAYENLGLSKNTV--IKLVS 235
            R +      +A    R  + V            +A     +Y+        +  + L +
Sbjct: 132 SRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKN 191

Query: 236 C-CPSLLIGGVDSRFVKVLEKLKELGFK-----------NDWIGRYLPGKGSYN------ 277
           C  P  ++  +     ++                        + R L  K  Y       
Sbjct: 192 CNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSK-PYENCLLVL 250

Query: 278 ---WD-QVSETLDFLYKIGYNEVQLLNLFKTNPALVFEG-SGQKVYVLFGRLLKLGLKMN 332
               + +     +   KI         L  T    V +  S      +      + L  +
Sbjct: 251 LNVQNAKAWNAFNLSCKI---------LLTTRFKQVTDFLSAATTTHISLDHHSMTLTPD 301

Query: 333 EVYSLFSQNPQILSSKFVKNL-LQAVGFLIEIGMGMKDISNMVL-MHAELM--GSCSLKG 388
           EV SL  +    L  +  ++L  +               +   L + AE +  G  +   
Sbjct: 302 EVKSLLLK---YLDCR-PQDLPREV-----------LTTNPRRLSIIAESIRDGLATWDN 346

Query: 389 PKTV-CSKLKVGRE-SLCQIIKDDPLKLFHLAS--KTEVKIDEQVDC----QNPSKDVEK 440
            K V C KL    E SL  +   +  K+F   S       I   +           DV  
Sbjct: 347 WKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMV 406

Query: 441 -TEFLLRLGYVE-NSEEVTKALKQFRGRGDQLQERFDCLVQAGLDSNVVR--NIVKRAPM 496
               L +   VE   +E T ++         L+ +     +  L  ++V   NI K    
Sbjct: 407 VVNKLHKYSLVEKQPKESTISIPSI-----YLELKVKLENEYALHRSIVDHYNIPKTFD- 460

Query: 497 VLNQSKDVLEKKID-YLKNYLCYPL------ESVVAFPA-YLCYDMGRINHRCKMYVWLR 548
               S D++   +D Y  +++ + L      E +  F   +L  D   +  +      +R
Sbjct: 461 ----SDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFL--DFRFLEQK------IR 508

Query: 549 ERGVA--KPTLSLSTILACSDAKF-EKYFVDVHPEGPAMWESLKK 590
               A       L+T+      KF + Y  D  P+   +  ++  
Sbjct: 509 HDSTAWNASGSILNTLQ---QLKFYKPYICDNDPKYERLVNAILD 550

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	595
3mva_O	343	Transcription termination factor, mitochondrial; a	100.0
3m66_A	270	Mterf3, mterf domain-containing protein 1, mitocho	100.0
3mva_O	343	Transcription termination factor, mitochondrial; a	100.0
4fp9_B	335	Mterf domain-containing protein 2; modification en	100.0
3m66_A	270	Mterf3, mterf domain-containing protein 1, mitocho	99.96
4fp9_B	335	Mterf domain-containing protein 2; modification en	99.89
4fzv_B	239	Mterf domain-containing protein 2; mterf fold, met	99.26
4fzv_B	239	Mterf domain-containing protein 2; mterf fold, met	98.17
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	95.18
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	93.16
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	86.29
3ff5_A	54	PEX14P, peroxisomal biogenesis factor 14; protein	82.15
4hpz_A	463	Dtale2; DNA binding protein, N-terminal domain; 2.	80.62
4hpz_A	463	Dtale2; DNA binding protein, N-terminal domain; 2.	80.51

>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A*

Probab=100.00  E-value=4.2e-46  Score=392.49  Aligned_cols=306  Identities=17%  Similarity=0.231  Sum_probs=268.5

Q ss_pred             hhHHHHHhhcCCCcchHHHHHHhcccccccCchhhHHHHHHHHHCCCChHHHHHHHHhCCcceecCccchHHHHHHHHHH
Q 007621          179 LDNFHVLCDYGIPRSKMGKMYVEATEIFRHDRGVLASKLWAYENLGLSKNTVIKLVSCCPSLLIGGVDSRFVKVLEKLKE  258 (595)
Q Consensus       179 ~p~~~~L~~~g~s~~~i~~~~k~~p~ll~~~~~~l~~~l~~L~~lGls~~~I~klv~~~P~lL~~~~~~~l~~~v~~L~~  258 (595)
                      ...+++|.++|++.++   +.+.+|+++..+.+..++.++||+++|++.++|++++.++|.+|..+++ ++.|++++|  
T Consensus        20 ~~~v~~L~s~Gl~~~~---~~~~~p~l~~~s~~~~~~vl~fL~~~G~s~~~i~~iv~~~P~lL~~~~~-~l~p~l~fL--   93 (343)
T 3mva_O           20 EDLLKNLLTMGVDIDM---ARKRQPGVFHRMITNEQDLKMFLLSKGASKEVIASIISRYPRAITRTPE-NLSKRWDLW--   93 (343)
T ss_dssp             CCHHHHHHHHTCCHHH---HHHHCGGGGGCSCCCHHHHHHHHHHTTCCHHHHHHHHHHCGGGGGCCHH-HHHHHHHHH--
T ss_pred             HHHHHHHHHcCCCHHH---HHHhCchhhccCcccHHHHHHHHHHcCCCHHHHHHHHHhCcHHHhCCHH-HHHHHHHHH--
Confidence            3468999999999655   5677899998887788999999999999999999999999999999966 477766544  


Q ss_pred             cCCCCcccccccCCCCCCChhhhHHHHHHHHhcCCCHHHHHHHHHhCCCccccCch-hhHHHHHHHHHHcCCChhHHHHH
Q 007621          259 LGFKNDWIGRYLPGKGSYNWDQVSETLDFLYKIGYNEVQLLNLFKTNPALVFEGSG-QKVYVLFGRLLKLGLKMNEVYSL  337 (595)
Q Consensus       259 lGv~~~~~~~~l~~~~~~~~~~~~~~l~~l~~lG~s~~~I~~lv~~~P~iL~~~~e-~~l~~~v~fL~~lGl~~~~i~~~  337 (595)
                                                    +++|+++++|.+++.++|++|..+.+ +++.|+++||+++|++.++++++
T Consensus        94 ------------------------------~~lG~s~~~i~~il~~~P~iLl~s~~~~~l~p~v~fL~~lGl~~~~i~~l  143 (343)
T 3mva_O           94 ------------------------------RKIVTSDLEIVNILERSPESFFRSNNNLNLENNIKFLYSVGLTRKCLCRL  143 (343)
T ss_dssp             ------------------------------TTTSSCHHHHHHHHHHCSHHHHSCCCHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred             ------------------------------HHcCCCHHHHHHHHHHCCHHHhCCChHhhHHHHHHHHHHhCCCHHHHHHH
Confidence                                          55999999999999999995444555 49999999999999999999999


Q ss_pred             HhhCCceeeccccccHHHHHHHHHHhCCC------hhhHHHHHHhcCcccccc--cccchHHHHHh-cCCChhHHHHHHH
Q 007621          338 FSQNPQILSSKFVKNLLQAVGFLIEIGMG------MKDISNMVLMHAELMGSC--SLKGPKTVCSK-LKVGRESLCQIIK  408 (595)
Q Consensus       338 I~~~P~lL~~sle~~l~p~~~fL~~~Gl~------~~~I~~il~~~P~lL~~s--~lk~~i~~L~~-lGv~~~~l~~lI~  408 (595)
                      +.++|++|++++|++ +|++++|+++|++      .+.|.+++.++|++++++  .++++++||++ +|++.+++..++.
T Consensus       144 l~~~P~il~~~~e~~-~~~v~~L~~lgv~~g~~~p~~~I~~il~~~P~iL~~s~~~i~~~v~fL~~~~G~~~~~~~~~i~  222 (343)
T 3mva_O          144 LTNAPRTFSNSLDLN-KQMVEFLQAAGLSLGHNDPADFVRKIIFKNPFILIQSTKRVKANIEFLRSTFNLNSEELLVLIC  222 (343)
T ss_dssp             HHHCGGGGTSCHHHH-HHHHHHHHHHHHHTTCSCHHHHHHHHHHHCGGGGGSCHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred             HHhCChhheeCHHHh-hHHHHHHHHhCCCcCCCcHHHHHHHHHHhCChHhcCCHHHHHHHHHHHHHHcCCCHHHHHHHHh
Confidence            999999999999876 9999999988764      778999999999999997  58999999995 9999999999998


Q ss_pred             hCCcccccccccchhhcccccccCCCCchHHHHHHHHHcCCCCChhHHHHHHHHhhcChhHHHHHHHHHH----HhCCCH
Q 007621          409 DDPLKLFHLASKTEVKIDEQVDCQNPSKDVEKTEFLLRLGYVENSEEVTKALKQFRGRGDQLQERFDCLV----QAGLDS  484 (595)
Q Consensus       409 ~~P~~L~~~~~~~~~~~~l~~s~~~~~~~~~k~~fl~~lGf~~~~~~~~~al~~~~~~~~~l~~r~~~L~----~~G~s~  484 (595)
                      ..|..+..               ..                                 .+.|+++++++.    ++||+.
T Consensus       223 ~~~~~~l~---------------~s---------------------------------~~~l~~~~~~l~e~~~~lG~s~  254 (343)
T 3mva_O          223 GPGAEILD---------------LS---------------------------------NDYARRSYANIKEKLFSLGCTE  254 (343)
T ss_dssp             TTTGGGGG---------------CC---------------------------------TTHHHHHHHHHHHHHHTTTCCH
T ss_pred             cCChHHhh---------------cc---------------------------------HHHHHHHHHHHHHHHHHcCCCH
Confidence            87654420               11                                 134566665554    799999


Q ss_pred             HHHHHHHHhCCcccccChHHHHHHHHHHHHHhCCChHHHhhcCcccccccccccchHHHHHHHHHcCCCCCCCCcc--cc
Q 007621          485 NVVRNIVKRAPMVLNQSKDVLEKKIDYLKNYLCYPLESVVAFPAYLCYDMGRINHRCKMYVWLRERGVAKPTLSLS--TI  562 (595)
Q Consensus       485 ~ev~~mi~~~P~iL~~s~e~L~~k~~fL~~~mg~~~~~l~~~P~~L~~sleri~pR~~~~~~L~~kgl~~~~~~l~--~i  562 (595)
                      +||..||.++|+||++|+++|++|++||++ ||++.++|+++|++|+||+|||+|||   ++|+++|+   +++++  ++
T Consensus       255 ~ev~~~v~~~P~il~~s~~~l~~k~~fl~~-mg~~~~~i~~~P~~l~~sleri~~R~---~~L~~~g~---~~~~~~~~~  327 (343)
T 3mva_O          255 EEVQKFVLSYPDVIFLAEKKFNDKIDCLME-ENISISQIIENPRVLDSSISTLKSRI---KELVNAGC---NLSTLNITL  327 (343)
T ss_dssp             HHHHHHHHTCGGGGGSCHHHHHHHHHHHHT-TTCCHHHHHHSGGGGGSCHHHHHHHH---HHHHTTTC---CSSSSCGGG
T ss_pred             HHHHHHHHhCCchhcccHHHHHHHHHHHHH-cCCCHHHHHhCCHHHhcCHHHHHHHH---HHHHHCCC---CCCCCcchh
Confidence            999999999999999999999999999999 99999999999999999999999999   57999998   55666  99


Q ss_pred             cccChHHHHHHHhh
Q 007621          563 LACSDAKFEKYFVD  576 (595)
Q Consensus       563 l~~sek~F~~~~v~  576 (595)
                      +++||++|.++|.+
T Consensus       328 l~~s~~~F~~~~~~  341 (343)
T 3mva_O          328 LSWSKKRYEAKLKK  341 (343)
T ss_dssp             GGSCHHHHHHHHHH
T ss_pred             hcCCHHHHHHHHhc
Confidence            99999999999965

>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A

Probab=100.00  E-value=7.2e-44  Score=363.47  Aligned_cols=255  Identities=17%  Similarity=0.255  Sum_probs=235.1

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHhCCCccccCchhhHHHHHHHHHHcCCChhHHHHHHhhCCceeeccccccHHHHHHHHH
Q 007621          282 SETLDFLYKIGYNEVQLLNLFKTNPALVFEGSGQKVYVLFGRLLKLGLKMNEVYSLFSQNPQILSSKFVKNLLQAVGFLI  361 (595)
Q Consensus       282 ~~~l~~l~~lG~s~~~I~~lv~~~P~iL~~~~e~~l~~~v~fL~~lGl~~~~i~~~I~~~P~lL~~sle~~l~p~~~fL~  361 (595)
                      .+++++|.++|++..+|.+....+|.+|.+++++++.++++||.++|++.++++++|.++|.+|++++|+ ++|+++||+
T Consensus         6 s~~l~~L~~lGv~~~~i~k~p~~~p~lL~~~~~~~l~~~l~fL~~lG~~~~~i~~il~~~P~lL~~~~e~-l~p~v~~L~   84 (270)
T 3m66_A            6 SETLQKLVLLGVDLSKIEKHPEAANLLLRLDFEKDIKQMLLFLKDVGIEDNQLGAFLTKNHAIFSEDLEN-LKTRVAYLH   84 (270)
T ss_dssp             HHHHHHHHHTTCCHHHHTTSHHHHHHHHTCCHHHHTHHHHHHHHHHTCCGGGHHHHHHHCTTGGGSCHHH-HHHHHHHHH
T ss_pred             hHHHHHHHHcCCCHHHHhhccchhhhhhccChhhhHHHHHHHHHHcCCCHHHHHHHHHhCChhhhCCHHH-HHHHHHHHH
Confidence            4688899999999999987777777779999999999999999999999999999999999999999998 999999999


Q ss_pred             HhCCChhhHHHHHHhcCcccccc--cccchHHHH-HhcCCChhHHHHHHHhCCcccccccccchhhcccccccCCCCchH
Q 007621          362 EIGMGMKDISNMVLMHAELMGSC--SLKGPKTVC-SKLKVGRESLCQIIKDDPLKLFHLASKTEVKIDEQVDCQNPSKDV  438 (595)
Q Consensus       362 ~~Gl~~~~I~~il~~~P~lL~~s--~lk~~i~~L-~~lGv~~~~l~~lI~~~P~~L~~~~~~~~~~~~l~~s~~~~~~~~  438 (595)
                      ++|++.++|.+++.++|++|+++  .+++++++| .++|++.+++.+++.++|+++.             .   +     
T Consensus        85 ~~Gls~~~i~~~l~~~P~lL~~s~~~l~~~v~~L~~~lG~~~~~i~~ll~~~P~il~-------------~---s-----  143 (270)
T 3m66_A           85 SKNFSKADVAQMVRKAPFLLNFSVERLDNRLGFFQKELELSVKKTRDLVVRLPRLLT-------------G---S-----  143 (270)
T ss_dssp             HTTCCHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHCCCHHHHHHHHHHSGGGGT-------------S---C-----
T ss_pred             HcCCCHHHHHHHHHhCCHHHcCCHHHHHHHHHHHHHHhCCCHHHHHHHHHhCCccee-------------e---c-----
Confidence            99999999999999999999987  589999999 5799999999999999999995             1   1     


Q ss_pred             HHHHHHHHcCCCCChhHHHHHHHHhhcChhHHHHHHHHHH-HhCCCHHHHHHHHHhCCcccccChHHHHHHHHHHHHHhC
Q 007621          439 EKTEFLLRLGYVENSEEVTKALKQFRGRGDQLQERFDCLV-QAGLDSNVVRNIVKRAPMVLNQSKDVLEKKIDYLKNYLC  517 (595)
Q Consensus       439 ~k~~fl~~lGf~~~~~~~~~al~~~~~~~~~l~~r~~~L~-~~G~s~~ev~~mi~~~P~iL~~s~e~L~~k~~fL~~~mg  517 (595)
                                                  .++++++++++. ++||+.+||..|+.++|++|++|+++|++|++||+++||
T Consensus       144 ----------------------------~e~~~~~v~~l~~~~G~s~~ei~~~v~~~P~il~~s~~~l~~k~~fL~~~mg  195 (270)
T 3m66_A          144 ----------------------------LEPVKENMKVYRLELGFKHNEIQHMITRIPKMLTANKMKLTETFDFVHNVMS  195 (270)
T ss_dssp             ----------------------------SHHHHHHHHHHHHTSCCCHHHHHHHHHHCGGGGTSCHHHHHHHHHHHHTTSC
T ss_pred             ----------------------------hHHHHHHHHHHHHHcCCCHHHHHHHHHhCChhheecHHHHHHHHHHHHHHhC
Confidence                                        135678889765 999999999999999999999999999999999999999


Q ss_pred             CChHHHhhcCcccccccccccchHHHHHHHHHcCCCCCC---CCcccccccChHHHHHHHhhhCCChHHHHH
Q 007621          518 YPLESVVAFPAYLCYDMGRINHRCKMYVWLRERGVAKPT---LSLSTILACSDAKFEKYFVDVHPEGPAMWE  586 (595)
Q Consensus       518 ~~~~~l~~~P~~L~~sleri~pR~~~~~~L~~kgl~~~~---~~l~~il~~sek~F~~~~v~~~~~~~~~~~  586 (595)
                      ++.++|+++|++|+||+|||+|||+++++|.++|+.+++   ++|++++.+||++|+++|++.+++..+.|.
T Consensus       196 ~~~~~i~~~P~~l~~Sleri~pR~~~l~~L~~~g~~~~~~~~~~L~~~l~~sd~~F~~~~~~~~~eey~~f~  267 (270)
T 3m66_A          196 IPHHIIVKFPQVFNTRLFKVKERHLFLTYLGRAQYDPAKPNYISLDKLVSIPDEIFCEEIAKASVQDFEKFL  267 (270)
T ss_dssp             CCHHHHHHCGGGGGSCHHHHHHHHHHHHHHTCCCCCTTSSSCCCHHHHHHSCHHHHHHHTTCSCHHHHHHHH
T ss_pred             CCHHHHHhCchHhhCCHHHHHHHHHHHHHhhccCCCCCCCCCCCHHHHhcCCHHHHHHHHhcCCHHHHHHHH
Confidence            999999999999999999999999999999999997654   678889999999999999999977666654

>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A*

Probab=100.00  E-value=6.1e-35  Score=307.35  Aligned_cols=250  Identities=18%  Similarity=0.264  Sum_probs=138.7

Q ss_pred             hhhhHHHHHhhcCCCcchHHHHHHhccc-ccccCc-hhhHHHHHHHHHCCCChHHHHHHHHhCCcceecCccchHHHHHH
Q 007621          177 VLLDNFHVLCDYGIPRSKMGKMYVEATE-IFRHDR-GVLASKLWAYENLGLSKNTVIKLVSCCPSLLIGGVDSRFVKVLE  254 (595)
Q Consensus       177 ~l~p~~~~L~~~g~s~~~i~~~~k~~p~-ll~~~~-~~l~~~l~~L~~lGls~~~I~klv~~~P~lL~~~~~~~l~~~v~  254 (595)
                      ++.|.++||.++|++++++++++.++|+ ++.+++ +.++|++++|+++|++.++|++++.++|++++.++++ .++.++
T Consensus        85 ~l~p~l~fL~~lG~s~~~i~~il~~~P~iLl~s~~~~~l~p~v~fL~~lGl~~~~i~~ll~~~P~il~~~~e~-~~~~v~  163 (343)
T 3mva_O           85 NLSKRWDLWRKIVTSDLEIVNILERSPESFFRSNNNLNLENNIKFLYSVGLTRKCLCRLLTNAPRTFSNSLDL-NKQMVE  163 (343)
T ss_dssp             HHHHHHHHHTTTSSCHHHHHHHHHHCSHHHHSCCCHHHHHHHHHHHHHTTCCHHHHHHHHHHCGGGGTSCHHH-HHHHHH
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHCCHHHhCCChHhhHHHHHHHHHHhCCCHHHHHHHHHhCChhheeCHHH-hhHHHH
Confidence            3444555555555555555555555555 233332 2455555555555555555555555555555555443 244444


Q ss_pred             HHHHcCCCCcccccccCCCCCCChhhhHHHHHHHHhcCCC--HHHHHHHHHhCCCccccCchhhHHHHHHHHHH-cCCCh
Q 007621          255 KLKELGFKNDWIGRYLPGKGSYNWDQVSETLDFLYKIGYN--EVQLLNLFKTNPALVFEGSGQKVYVLFGRLLK-LGLKM  331 (595)
Q Consensus       255 ~L~~lGv~~~~~~~~l~~~~~~~~~~~~~~l~~l~~lG~s--~~~I~~lv~~~P~iL~~~~e~~l~~~v~fL~~-lGl~~  331 (595)
                      +|+++|+                            ++|++  ++.|.+++.++|.++..+ +++++++++||++ +|++.
T Consensus       164 ~L~~lgv----------------------------~~g~~~p~~~I~~il~~~P~iL~~s-~~~i~~~v~fL~~~~G~~~  214 (343)
T 3mva_O          164 FLQAAGL----------------------------SLGHNDPADFVRKIIFKNPFILIQS-TKRVKANIEFLRSTFNLNS  214 (343)
T ss_dssp             HHHHHHH----------------------------HTTCSCHHHHHHHHHHHCGGGGGSC-HHHHHHHHHHHHHHSCCCH
T ss_pred             HHHHhCC----------------------------CcCCCcHHHHHHHHHHhCChHhcCC-HHHHHHHHHHHHHHcCCCH
Confidence            4444222                            14443  444555555555555433 4455555555553 45555


Q ss_pred             hHHHHHHhhCC-ceeeccccccHHHHHHHHHHhCCChhhHHHHHHhcCcccccccccchHHHHHhcCCChhHHHHHHHhC
Q 007621          332 NEVYSLFSQNP-QILSSKFVKNLLQAVGFLIEIGMGMKDISNMVLMHAELMGSCSLKGPKTVCSKLKVGRESLCQIIKDD  410 (595)
Q Consensus       332 ~~i~~~I~~~P-~lL~~sle~~l~p~~~fL~~~Gl~~~~I~~il~~~P~lL~~s~lk~~i~~L~~lGv~~~~l~~lI~~~  410 (595)
                      +++.+++.+.| .+++++. +.+++++.++.+                             +++++|++.++++.++.++
T Consensus       215 ~~~~~~i~~~~~~~l~~s~-~~l~~~~~~l~e-----------------------------~~~~lG~s~~ev~~~v~~~  264 (343)
T 3mva_O          215 EELLVLICGPGAEILDLSN-DYARRSYANIKE-----------------------------KLFSLGCTEEEVQKFVLSY  264 (343)
T ss_dssp             HHHHHHHHTTTGGGGGCCT-THHHHHHHHHHH-----------------------------HHHTTTCCHHHHHHHHHTC
T ss_pred             HHHHHHHhcCChHHhhccH-HHHHHHHHHHHH-----------------------------HHHHcCCCHHHHHHHHHhC
Confidence            45444444432 4444443 234444444331                             1113555555555555555


Q ss_pred             CcccccccccchhhcccccccCCCCchHHHHHHHHHcCCCCChhHHHHHHHHhhcChhHHHHHHHHHHHhCCCHHHHHHH
Q 007621          411 PLKLFHLASKTEVKIDEQVDCQNPSKDVEKTEFLLRLGYVENSEEVTKALKQFRGRGDQLQERFDCLVQAGLDSNVVRNI  490 (595)
Q Consensus       411 P~~L~~~~~~~~~~~~l~~s~~~~~~~~~k~~fl~~lGf~~~~~~~~~al~~~~~~~~~l~~r~~~L~~~G~s~~ev~~m  490 (595)
                      |.+|.             .                                    ..++++++++||.++|++.++|   
T Consensus       265 P~il~-------------~------------------------------------s~~~l~~k~~fl~~mg~~~~~i---  292 (343)
T 3mva_O          265 PDVIF-------------L------------------------------------AEKKFNDKIDCLMEENISISQI---  292 (343)
T ss_dssp             GGGGG-------------S------------------------------------CHHHHHHHHHHHHTTTCCHHHH---
T ss_pred             Cchhc-------------c------------------------------------cHHHHHHHHHHHHHcCCCHHHH---
Confidence            55553             0                                    1246889999999999999886   


Q ss_pred             HHhCCcccccChHHHHHHHHHHHHHhCCChHHHhhcCcccccccccccchHH
Q 007621          491 VKRAPMVLNQSKDVLEKKIDYLKNYLCYPLESVVAFPAYLCYDMGRINHRCK  542 (595)
Q Consensus       491 i~~~P~iL~~s~e~L~~k~~fL~~~mg~~~~~l~~~P~~L~~sleri~pR~~  542 (595)
                       .++|++|.+|.|+|++|++||.+ .|+..+.  .+-.+|++|-++...|+.
T Consensus       293 -~~~P~~l~~sleri~~R~~~L~~-~g~~~~~--~~~~~l~~s~~~F~~~~~  340 (343)
T 3mva_O          293 -IENPRVLDSSISTLKSRIKELVN-AGCNLST--LNITLLSWSKKRYEAKLK  340 (343)
T ss_dssp             -HHSGGGGGSCHHHHHHHHHHHHT-TTCCSSS--SCGGGGGSCHHHHHHHHH
T ss_pred             -HhCCHHHhcCHHHHHHHHHHHHH-CCCCCCC--CcchhhcCCHHHHHHHHh
Confidence             59999999999999999999987 6986551  222777777666655553

>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}

Probab=100.00  E-value=4.2e-34  Score=297.36  Aligned_cols=218  Identities=19%  Similarity=0.341  Sum_probs=190.8

Q ss_pred             hhHHHHHHHHhcCCCHHHHHHHHHhCCCccccCchhhHHHHHHHHHHcCCChhHHHHHHhhCCceeeccccccHHHHHHH
Q 007621          280 QVSETLDFLYKIGYNEVQLLNLFKTNPALVFEGSGQKVYVLFGRLLKLGLKMNEVYSLFSQNPQILSSKFVKNLLQAVGF  359 (595)
Q Consensus       280 ~~~~~l~~l~~lG~s~~~I~~lv~~~P~iL~~~~e~~l~~~v~fL~~lGl~~~~i~~~I~~~P~lL~~sle~~l~p~~~f  359 (595)
                      ++..++..|.++||++++|++++.++|.++.    .++.+++.||..+|++.++|+++|.++|.+|+++++ +|+|++.|
T Consensus        45 ~~e~~l~~L~d~Gfs~~~i~~il~~~P~il~----~~l~~~i~~L~~LGls~e~V~kiL~k~P~lL~~s~e-~L~~~l~f  119 (335)
T 4fp9_B           45 ELERVMSSLLDMGFSNAHINELLSVRRGASL----QQLLDIISEFILLGLNPEPVCVVLKKSPQLLKLPIM-QMRKRSSY  119 (335)
T ss_dssp             HHHHHHHHHHHTTCCHHHHHHHHHHCSSCCH----HHHHHHHHHHHHTTCCHHHHHHHHHHCGGGGGSCHH-HHHHHHHH
T ss_pred             cHHHHHHHHHHCCCCHHHHHHHHHhCcccch----hHHHHHHHHHHHcCCCHHHHHHHHHhChhhccCCHH-HHHHHHHH
Confidence            3455778888899999999999999999874    478889999999999999999999999999999985 69999999


Q ss_pred             HHHhCCChhhHHHHHHhcCcccccccccchHHHHHhcCCChhHHHHHHHhCCcccccccccchhhcccccccCCCCchHH
Q 007621          360 LIEIGMGMKDISNMVLMHAELMGSCSLKGPKTVCSKLKVGRESLCQIIKDDPLKLFHLASKTEVKIDEQVDCQNPSKDVE  439 (595)
Q Consensus       360 L~~~Gl~~~~I~~il~~~P~lL~~s~lk~~i~~L~~lGv~~~~l~~lI~~~P~~L~~~~~~~~~~~~l~~s~~~~~~~~~  439 (595)
                      |+++|++.++|.+++.++|++|+++                                                       
T Consensus       120 L~~lGl~~~~i~~ll~~~P~lL~~s-------------------------------------------------------  144 (335)
T 4fp9_B          120 LQKLGLGEGKLKRVLYCCPEIFTMR-------------------------------------------------------  144 (335)
T ss_dssp             HHHTTCTTTTHHHHHHHCGGGGTSC-------------------------------------------------------
T ss_pred             HHHcCCCHHHHHHHHHhCchhhccC-------------------------------------------------------
Confidence            9999999999999999999888764                                                       


Q ss_pred             HHHHHHHcCCCCChhHHHHHHHHhhcChhHHHHHHHHHH-HhCCCHHHHHHHHHhCCcccccChHHHHHHHHHHHHHhCC
Q 007621          440 KTEFLLRLGYVENSEEVTKALKQFRGRGDQLQERFDCLV-QAGLDSNVVRNIVKRAPMVLNQSKDVLEKKIDYLKNYLCY  518 (595)
Q Consensus       440 k~~fl~~lGf~~~~~~~~~al~~~~~~~~~l~~r~~~L~-~~G~s~~ev~~mi~~~P~iL~~s~e~L~~k~~fL~~~mg~  518 (595)
                                                 .+.+++++.+|. ++||+.+||..||.++|+||++|.++|++|++||+++||+
T Consensus       145 ---------------------------~e~i~~~v~~L~~~lGfS~~ev~~mv~r~P~lL~~S~e~L~~K~efLv~~Mgl  197 (335)
T 4fp9_B          145 ---------------------------QQDINDTVRLLKEKCLFTVQQVTKILHSCPSVLREDLGQLEYKFQYAYFRMGI  197 (335)
T ss_dssp             ---------------------------HHHHHHHHHHHHHTSCCCHHHHHHHHHHCGGGGTSCHHHHHHHHHHHHTTTCC
T ss_pred             ---------------------------hHHHHHHHHHHHHHcCCCHHHHHHHHHhCChhhhCCHHHHHHHHHHHHHHhCC
Confidence                                       124566777786 8999999999999999999999999999999999999999


Q ss_pred             ChHHHhhcCcccccccccccchHHHHHHHHHcCCCC----------CCCCcccccccChHHHHHHHhhhCCChHHHHHHH
Q 007621          519 PLESVVAFPAYLCYDMGRINHRCKMYVWLRERGVAK----------PTLSLSTILACSDAKFEKYFVDVHPEGPAMWESL  588 (595)
Q Consensus       519 ~~~~l~~~P~~L~~sleri~pR~~~~~~L~~kgl~~----------~~~~l~~il~~sek~F~~~~v~~~~~~~~~~~~~  588 (595)
                      ++++|++ |+||+||++||+|||.+   |+..|..+          ++++|.+++.+||++|+.++.+.+.+..+.|+++
T Consensus       198 ~~~eIvk-P~~l~ySLeRIkpRH~f---L~~lG~~q~~~~k~~~~~~npsL~~il~~sd~~F~~~vA~~s~eey~~F~k~  273 (335)
T 4fp9_B          198 KHPDIVK-SEYLQYSLTKIKQRHIY---LERLGRYQTPDKKGQTQIPNPLLKDILRVSEAEFLARTACTSVEEFQVFKKL  273 (335)
T ss_dssp             CHHHHHH-TTGGGSCHHHHHHHHHH---HHHHTSCCCCCSSSCCSSCCCCHHHHTTSCHHHHHHHTSCCCHHHHHHHHHH
T ss_pred             CHHHccc-cchhhccHHHHHHHHHH---HHHcCCccCCCcccccCCCCccHHHHHcCCHHHHHHHHHhcCHHHHHHHHHH
Confidence            9999997 99999999999999975   66667642          3567999999999999999999998888877654

>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A

Probab=99.96  E-value=1.5e-29  Score=257.61  Aligned_cols=214  Identities=18%  Similarity=0.234  Sum_probs=177.9

Q ss_pred             HHHHHHHHHCCCChHHHHHHHHhCCcceecCccchHHHHHHHHHHcCCCCcccccccCCCCCCChhhhHHHHHHHHhcCC
Q 007621          214 ASKLWAYENLGLSKNTVIKLVSCCPSLLIGGVDSRFVKVLEKLKELGFKNDWIGRYLPGKGSYNWDQVSETLDFLYKIGY  293 (595)
Q Consensus       214 ~~~l~~L~~lGls~~~I~klv~~~P~lL~~~~~~~l~~~v~~L~~lGv~~~~~~~~l~~~~~~~~~~~~~~l~~l~~lG~  293 (595)
                      .+.+++|.++|++.++|.+....+|.+|..++++++.|.+++|                                +++|+
T Consensus         6 s~~l~~L~~lGv~~~~i~k~p~~~p~lL~~~~~~~l~~~l~fL--------------------------------~~lG~   53 (270)
T 3m66_A            6 SETLQKLVLLGVDLSKIEKHPEAANLLLRLDFEKDIKQMLLFL--------------------------------KDVGI   53 (270)
T ss_dssp             HHHHHHHHHTTCCHHHHTTSHHHHHHHHTCCHHHHTHHHHHHH--------------------------------HHHTC
T ss_pred             hHHHHHHHHcCCCHHHHhhccchhhhhhccChhhhHHHHHHHH--------------------------------HHcCC
Confidence            4678888888888888877777777778888877676655544                                44888


Q ss_pred             CHHHHHHHHHhCCCccccCchhhHHHHHHHHHHcCCChhHHHHHHhhCCceeeccccccHHHHHHHH-HHhCCChhhHHH
Q 007621          294 NEVQLLNLFKTNPALVFEGSGQKVYVLFGRLLKLGLKMNEVYSLFSQNPQILSSKFVKNLLQAVGFL-IEIGMGMKDISN  372 (595)
Q Consensus       294 s~~~I~~lv~~~P~iL~~~~e~~l~~~v~fL~~lGl~~~~i~~~I~~~P~lL~~sle~~l~p~~~fL-~~~Gl~~~~I~~  372 (595)
                      ++++|++++.++|.+|.++.++ +.|+++||+++|++.+++++++.++|++|+++++ +++|+++|| +++|++.+++.+
T Consensus        54 ~~~~i~~il~~~P~lL~~~~e~-l~p~v~~L~~~Gls~~~i~~~l~~~P~lL~~s~~-~l~~~v~~L~~~lG~~~~~i~~  131 (270)
T 3m66_A           54 EDNQLGAFLTKNHAIFSEDLEN-LKTRVAYLHSKNFSKADVAQMVRKAPFLLNFSVE-RLDNRLGFFQKELELSVKKTRD  131 (270)
T ss_dssp             CGGGHHHHHHHCTTGGGSCHHH-HHHHHHHHHHTTCCHHHHHHHHHHSTTGGGSCHH-HHHHHHHHHHHHHCCCHHHHHH
T ss_pred             CHHHHHHHHHhCChhhhCCHHH-HHHHHHHHHHcCCCHHHHHHHHHhCCHHHcCCHH-HHHHHHHHHHHHhCCCHHHHHH
Confidence            8888888888888888877775 8888888888888888888888888888888887 488888888 578888888888


Q ss_pred             HHHhcCcccccc--cccchHHHH-HhcCCChhHHHHHHHhCCcccccccccchhhcccccccCCCCchHHHHHHHHHcCC
Q 007621          373 MVLMHAELMGSC--SLKGPKTVC-SKLKVGRESLCQIIKDDPLKLFHLASKTEVKIDEQVDCQNPSKDVEKTEFLLRLGY  449 (595)
Q Consensus       373 il~~~P~lL~~s--~lk~~i~~L-~~lGv~~~~l~~lI~~~P~~L~~~~~~~~~~~~l~~s~~~~~~~~~k~~fl~~lGf  449 (595)
                      ++.++|.+++.+  .++++++++ .++|++.+++..++.++|++|.             .                    
T Consensus       132 ll~~~P~il~~s~e~~~~~v~~l~~~~G~s~~ei~~~v~~~P~il~-------------~--------------------  178 (270)
T 3m66_A          132 LVVRLPRLLTGSLEPVKENMKVYRLELGFKHNEIQHMITRIPKMLT-------------A--------------------  178 (270)
T ss_dssp             HHHHSGGGGTSCSHHHHHHHHHHHHTSCCCHHHHHHHHHHCGGGGT-------------S--------------------
T ss_pred             HHHhCCcceeechHHHHHHHHHHHHHcCCCHHHHHHHHHhCChhhe-------------e--------------------
Confidence            888888888886  467888865 6799999999999999998885             1                    


Q ss_pred             CCChhHHHHHHHHhhcChhHHHHHHHHHH-HhCCCHHHHHHHHHhCCcccccChHHHHHHHHHHHH
Q 007621          450 VENSEEVTKALKQFRGRGDQLQERFDCLV-QAGLDSNVVRNIVKRAPMVLNQSKDVLEKKIDYLKN  514 (595)
Q Consensus       450 ~~~~~~~~~al~~~~~~~~~l~~r~~~L~-~~G~s~~ev~~mi~~~P~iL~~s~e~L~~k~~fL~~  514 (595)
                                      +.+++++|++||. ++|++.++|    .++|.+|++|.++|+++++|+..
T Consensus       179 ----------------s~~~l~~k~~fL~~~mg~~~~~i----~~~P~~l~~Sleri~pR~~~l~~  224 (270)
T 3m66_A          179 ----------------NKMKLTETFDFVHNVMSIPHHII----VKFPQVFNTRLFKVKERHLFLTY  224 (270)
T ss_dssp             ----------------CHHHHHHHHHHHHTTSCCCHHHH----HHCGGGGGSCHHHHHHHHHHHHH
T ss_pred             ----------------cHHHHHHHHHHHHHHhCCCHHHH----HhCchHhhCCHHHHHHHHHHHHH
Confidence                            1247899999998 899999875    59999999999999999999986

>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}

Probab=99.89  E-value=3.5e-23  Score=215.23  Aligned_cols=174  Identities=16%  Similarity=0.260  Sum_probs=152.7

Q ss_pred             HHHHCCCCcCCCccccC--ccccccCCcchhhhHHHHHhhcCCCcchHHHHHHhcccccccCchhhHHHHHHHHHCCCCh
Q 007621          150 FFESLGLSQSELSPLLP--RHLMFLSDDEVLLDNFHVLCDYGIPRSKMGKMYVEATEIFRHDRGVLASKLWAYENLGLSK  227 (595)
Q Consensus       150 fl~slGls~~~l~~ll~--~~~l~~s~d~~l~p~~~~L~~~g~s~~~i~~~~k~~p~ll~~~~~~l~~~l~~L~~lGls~  227 (595)
                      +|.++|+++.++++++.  |.++    ..++.+.+.+|..+|++.+.|+++++++|++|+++.+.++++++||+++|++.
T Consensus        52 ~L~d~Gfs~~~i~~il~~~P~il----~~~l~~~i~~L~~LGls~e~V~kiL~k~P~lL~~s~e~L~~~l~fL~~lGl~~  127 (335)
T 4fp9_B           52 SLLDMGFSNAHINELLSVRRGAS----LQQLLDIISEFILLGLNPEPVCVVLKKSPQLLKLPIMQMRKRSSYLQKLGLGE  127 (335)
T ss_dssp             HHHHTTCCHHHHHHHHHHCSSCC----HHHHHHHHHHHHHTTCCHHHHHHHHHHCGGGGGSCHHHHHHHHHHHHHTTCTT
T ss_pred             HHHHCCCCHHHHHHHHHhCcccc----hhHHHHHHHHHHHcCCCHHHHHHHHHhChhhccCCHHHHHHHHHHHHHcCCCH
Confidence            57778888888888766  5543    45688999999999999999999999999999999888999999999999999


Q ss_pred             HHHHHHHHhCCcceecCccchHHHHHHHHHHcCCCCcccccccCCCCCCChhhhHHHHHHHHhcCCCHHHHHHHHHhCCC
Q 007621          228 NTVIKLVSCCPSLLIGGVDSRFVKVLEKLKELGFKNDWIGRYLPGKGSYNWDQVSETLDFLYKIGYNEVQLLNLFKTNPA  307 (595)
Q Consensus       228 ~~I~klv~~~P~lL~~~~~~~l~~~v~~L~~lGv~~~~~~~~l~~~~~~~~~~~~~~l~~l~~lG~s~~~I~~lv~~~P~  307 (595)
                      .+|.+++.++|++|+.+.++ +...+.+|.                               .++||+.++|..++.++|+
T Consensus       128 ~~i~~ll~~~P~lL~~s~e~-i~~~v~~L~-------------------------------~~lGfS~~ev~~mv~r~P~  175 (335)
T 4fp9_B          128 GKLKRVLYCCPEIFTMRQQD-INDTVRLLK-------------------------------EKCLFTVQQVTKILHSCPS  175 (335)
T ss_dssp             TTHHHHHHHCGGGGTSCHHH-HHHHHHHHH-------------------------------HTSCCCHHHHHHHHHHCGG
T ss_pred             HHHHHHHHhCchhhccChHH-HHHHHHHHH-------------------------------HHcCCCHHHHHHHHHhCCh
Confidence            99999999999999999874 655444433                               3699999999999999999


Q ss_pred             ccccCchhhHHHHHHHHHH-cCCChhHHHHHHhhCCceeeccccccHHHHHHHHHHhCCC
Q 007621          308 LVFEGSGQKVYVLFGRLLK-LGLKMNEVYSLFSQNPQILSSKFVKNLLQAVGFLIEIGMG  366 (595)
Q Consensus       308 iL~~~~e~~l~~~v~fL~~-lGl~~~~i~~~I~~~P~lL~~sle~~l~p~~~fL~~~Gl~  366 (595)
                      ||.++ .++|+++++||.+ +|++.++|.    + |.+|+||++ +|+||+.||+.+|.-
T Consensus       176 lL~~S-~e~L~~K~efLv~~Mgl~~~eIv----k-P~~l~ySLe-RIkpRH~fL~~lG~~  228 (335)
T 4fp9_B          176 VLRED-LGQLEYKFQYAYFRMGIKHPDIV----K-SEYLQYSLT-KIKQRHIYLERLGRY  228 (335)
T ss_dssp             GGTSC-HHHHHHHHHHHHTTTCCCHHHHH----H-TTGGGSCHH-HHHHHHHHHHHHTSC
T ss_pred             hhhCC-HHHHHHHHHHHHHHhCCCHHHcc----c-cchhhccHH-HHHHHHHHHHHcCCc
Confidence            99975 7799999999997 699998874    3 999999998 899999999999974

>4fzv_B Mterf domain-containing protein 2; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens}

Probab=99.26  E-value=5.4e-11  Score=105.82  Aligned_cols=184  Identities=21%  Similarity=0.328  Sum_probs=144.0

Q ss_pred             HHHHHHcCCChhHHHHHHhhCCceeeccccccHHHHHHHHHHhCCChhhHHHHHHhcCcccccccccchHHHHHhcCCCh
Q 007621          321 FGRLLKLGLKMNEVYSLFSQNPQILSSKFVKNLLQAVGFLIEIGMGMKDISNMVLMHAELMGSCSLKGPKTVCSKLKVGR  400 (595)
Q Consensus       321 v~fL~~lGl~~~~i~~~I~~~P~lL~~sle~~l~p~~~fL~~~Gl~~~~I~~il~~~P~lL~~s~lk~~i~~L~~lGv~~  400 (595)
                      +.-|.-+|+.++-++-++.+.|++|...+ -.++.+-.||+.+|+++..+.+++..+|.++++.               .
T Consensus        37 isefillglnpepvcvvlkkspqllklpi-mqmrkrssylqklglgegklkrvlyccpeiftmr---------------q  100 (239)
T 4fzv_B           37 ISEFILLGLNPEPVCVVLKKSPQLLKLPI-MQMRKRSSYLQKLGLGEGKLKRVLYCCPEIFTMR---------------Q  100 (239)
T ss_dssp             HHHHHHHCCCTTHHHHHHHSCGGGGTSCH-HHHHHHHHHHHHHTTCSSCCHHHHHHCGGGGTSC---------------H
T ss_pred             HHHHHhhcCCCCceEEEecCCHHHhcChH-HHHHHHHHHHHHhCCCccchhhheecCcHHHHHH---------------H
Confidence            44455568888888888888888888877 4677778888888888888888888888877753               0


Q ss_pred             hHHHHHHHhCCcccccccccchhhcccccccCCCCchHHHHHHHHHcCCCCChhHHHHHHHHhhcChhHHHHHHHHHH-H
Q 007621          401 ESLCQIIKDDPLKLFHLASKTEVKIDEQVDCQNPSKDVEKTEFLLRLGYVENSEEVTKALKQFRGRGDQLQERFDCLV-Q  479 (595)
Q Consensus       401 ~~l~~lI~~~P~~L~~~~~~~~~~~~l~~s~~~~~~~~~k~~fl~~lGf~~~~~~~~~al~~~~~~~~~l~~r~~~L~-~  479 (595)
                      .                                                                   .+.+.+..|+ .
T Consensus       101 q-------------------------------------------------------------------dindtvrllkek  113 (239)
T 4fzv_B          101 Q-------------------------------------------------------------------DINDTVRLLKEK  113 (239)
T ss_dssp             H-------------------------------------------------------------------HHHHHHHHHHHH
T ss_pred             h-------------------------------------------------------------------hHhHHHHHHHHh
Confidence            0                                                                   1223344555 7


Q ss_pred             hCCCHHHHHHHHHhCCcccccChHHHHHHHHHHHHHhCCChHHHhhcCcccccccccccchHHHHHHHHH------cCCC
Q 007621          480 AGLDSNVVRNIVKRAPMVLNQSKDVLEKKIDYLKNYLCYPLESVVAFPAYLCYDMGRINHRCKMYVWLRE------RGVA  553 (595)
Q Consensus       480 ~G~s~~ev~~mi~~~P~iL~~s~e~L~~k~~fL~~~mg~~~~~l~~~P~~L~~sleri~pR~~~~~~L~~------kgl~  553 (595)
                      +-|+..++..++..+|.+|.-....++-|+.|-.-.||+...+|++. .||.||+..|+.||-+++.|-.      +|-.
T Consensus       114 clftvqqvtkilhscpsvlredlgqleykfqyayfrmgikhpdivks-eylqysltkikqrhiylerlgryqtpdkkgqt  192 (239)
T 4fzv_B          114 CLFTVQQVTKILHSCPSVLREDLGQLEYKFQYAYFRMGIKHPDIVKS-EYLQYSLTKIKQRHIYLERLGRYQTPDKKGQT  192 (239)
T ss_dssp             SCCCHHHHHHHHHHCGGGGTSCTTHHHHHHHHHHHTSCCCHHHHHHT-TGGGSCHHHHHHHHHHHHHHTCCCCCCSSSCC
T ss_pred             HHhhHHHHHHHHHhCcHHHHHHHhhhhhhHhHHHHHccCCCcchhHH-HHHHHHHHHHHHHHhHHHHhcccCCCCccCCc
Confidence            78999999999999999999999999999999999999999999985 8999999999999987666632      2221


Q ss_pred             -CCCCCcccccccChHHHHHHHhhhCCChHHHHHHH
Q 007621          554 -KPTLSLSTILACSDAKFEKYFVDVHPEGPAMWESL  588 (595)
Q Consensus       554 -~~~~~l~~il~~sek~F~~~~v~~~~~~~~~~~~~  588 (595)
                       .|+.-+.+++..||.+|.++-.+-.-+..++++++
T Consensus       193 qipnpllkdilrvseaeflartactsveefqvfkkl  228 (239)
T 4fzv_B          193 QIPNPLLKDILRVSEAEFLARTACTSVEEFQVFKKL  228 (239)
T ss_dssp             SSCCCCHHHHHTSCHHHHHHHTSCSCHHHHHHHHHH
T ss_pred             cCCChHHHHHHHHhHHHHHHHHhcccHHHHHHHHHH
Confidence             23567889999999999999887766666666554

>4fzv_B Mterf domain-containing protein 2; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens}

Probab=98.17  E-value=1.4e-05  Score=71.19  Aligned_cols=150  Identities=17%  Similarity=0.304  Sum_probs=124.8

Q ss_pred             hhhhHHHHHhhcCCCcchHHHHHHhcccccccCchhhHHHHHHHHHCCCChHHHHHHHHhCCcceecCccchHHHHHHHH
Q 007621          177 VLLDNFHVLCDYGIPRSKMGKMYVEATEIFRHDRGVLASKLWAYENLGLSKNTVIKLVSCCPSLLIGGVDSRFVKVLEKL  256 (595)
Q Consensus       177 ~l~p~~~~L~~~g~s~~~i~~~~k~~p~ll~~~~~~l~~~l~~L~~lGls~~~I~klv~~~P~lL~~~~~~~l~~~v~~L  256 (595)
                      ++...+.-+.-+|...+-+.-++++.|.++...--.+..+-.+|+.+|+....+.+++-+||.++++.-. ++...|..|
T Consensus        32 qlldiisefillglnpepvcvvlkkspqllklpimqmrkrssylqklglgegklkrvlyccpeiftmrqq-dindtvrll  110 (239)
T 4fzv_B           32 QLLDIISEFILLGLNPEPVCVVLKKSPQLLKLPIMQMRKRSSYLQKLGLGEGKLKRVLYCCPEIFTMRQQ-DINDTVRLL  110 (239)
T ss_dssp             TTTHHHHHHHHHCCCTTHHHHHHHSCGGGGTSCHHHHHHHHHHHHHHTTCSSCCHHHHHHCGGGGTSCHH-HHHHHHHHH
T ss_pred             HHHHHHHHHHhhcCCCCceEEEecCCHHHhcChHHHHHHHHHHHHHhCCCccchhhheecCcHHHHHHHh-hHhHHHHHH
Confidence            3444555566679999999999999999999887778888999999999999999999999999998854 477777766


Q ss_pred             HHcCCCCcccccccCCCCCCChhhhHHHHHHHHhcCCCHHHHHHHHHhCCCccccCchhhHHHHHHHHH-HcCCChhHHH
Q 007621          257 KELGFKNDWIGRYLPGKGSYNWDQVSETLDFLYKIGYNEVQLLNLFKTNPALVFEGSGQKVYVLFGRLL-KLGLKMNEVY  335 (595)
Q Consensus       257 ~~lGv~~~~~~~~l~~~~~~~~~~~~~~l~~l~~lG~s~~~I~~lv~~~P~iL~~~~e~~l~~~v~fL~-~lGl~~~~i~  335 (595)
                      ++                               ..-|+-.++.+++..+|.++..+.+ .+.-+++|-- .+|+...+|.
T Consensus       111 ke-------------------------------kclftvqqvtkilhscpsvlredlg-qleykfqyayfrmgikhpdiv  158 (239)
T 4fzv_B          111 KE-------------------------------KCLFTVQQVTKILHSCPSVLREDLG-QLEYKFQYAYFRMGIKHPDIV  158 (239)
T ss_dssp             HH-------------------------------HSCCCHHHHHHHHHHCGGGGTSCTT-HHHHHHHHHHHTSCCCHHHHH
T ss_pred             HH-------------------------------hHHhhHHHHHHHHHhCcHHHHHHHh-hhhhhHhHHHHHccCCCcchh
Confidence            65                               4778999999999999999997654 8888888766 6899998874


Q ss_pred             HHHhhCCceeeccccccHHHHHHHHHHhCC
Q 007621          336 SLFSQNPQILSSKFVKNLLQAVGFLIEIGM  365 (595)
Q Consensus       336 ~~I~~~P~lL~~sle~~l~p~~~fL~~~Gl  365 (595)
                      +     ...|.||+ ..++.+.-||+.+|-
T Consensus       159 k-----seylqysl-tkikqrhiylerlgr  182 (239)
T 4fzv_B          159 K-----SEYLQYSL-TKIKQRHIYLERLGR  182 (239)
T ss_dssp             H-----TTGGGSCH-HHHHHHHHHHHHHTC
T ss_pred             H-----HHHHHHHH-HHHHHHHhHHHHhcc
Confidence            3     35677888 579999999999884

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae}

Probab=95.18  E-value=0.14  Score=56.34  Aligned_cols=230  Identities=17%  Similarity=0.241  Sum_probs=120.0

Q ss_pred             HHHHHHhcCCCCHHHHHHHhccC-----chHHHHHHh----cCC-CchhHHhhhcc---ccccCccccchh-HHHHCCCC
Q 007621           92 LFDYLHSTRSLGYMDAEHISKNS-----PDFVLNLLS----KID-SGKDVTRSLMR---FLRYNPINEFEP-FFESLGLS  157 (595)
Q Consensus        92 ~~~YL~~tcgLs~~~A~~~Sk~s-----P~~v~~lL~----~~~-s~~~v~~~~p~---~L~~~p~~~l~p-fl~slGls  157 (595)
                      +..-|-..+|||++|-..|+.|.     -.+|.+++.    .+| +..||++--.-   --...-...++| ..+..|++
T Consensus       245 ~lp~l~~~~gls~~qvVaIAsn~GGkQALeaV~~llp~L~~~~gls~~qvvaIAsn~GGkQALetV~~llp~L~~~~glt  324 (1047)
T 3ugm_A          245 LLPVLCQAHGLPPDQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHGGGKQALETVQRLLPVLCQAHGLT  324 (1047)
T ss_dssp             HHHHHHHHSCCCHHHHHHHHSSTTHHHHHHHHHHHSHHHHHHHCCCHHHHHHHHSSTTHHHHHHHHHHHHHHHHHHTCCC
T ss_pred             hhhhhhhccCCCHHHHHHHHhcCcchHHHHHHHHHhhhhhccccCCHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCC
Confidence            33445555788888888887762     334444333    245 66665542210   000011223556 44468999


Q ss_pred             cCCCccccCccccccCCcchhhhH----HHHHh-hcCCCcchHHHHHHhcccccccC-chhhHHHHHHHHH-CCCChHHH
Q 007621          158 QSELSPLLPRHLMFLSDDEVLLDN----FHVLC-DYGIPRSKMGKMYVEATEIFRHD-RGVLASKLWAYEN-LGLSKNTV  230 (595)
Q Consensus       158 ~~~l~~ll~~~~l~~s~d~~l~p~----~~~L~-~~g~s~~~i~~~~k~~p~ll~~~-~~~l~~~l~~L~~-lGls~~~I  230 (595)
                      +.++..|-..     +.-++-++.    +-.|+ .+|++.+++..|-....   +.. -+.+..-+-.|.+ .|+++++|
T Consensus       325 p~qvVaIAsn-----~GGkQALe~V~~llpvL~~~~gls~~qvVaIAsn~G---GkQALe~V~~llp~L~~~~gls~~~v  396 (1047)
T 3ugm_A          325 PDQVVAIASH-----DGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGG---GKQALETVQRLLPVLCQAHGLTPDQV  396 (1047)
T ss_dssp             HHHHHHHHSS-----SSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHSSTT---HHHHHHHHHHHHHHHHTTSCCCHHHH
T ss_pred             HHHheeeccc-----CccHHHHHHHHHHhhhhhhhccCCHHHhhhhhhcCc---hHHHHHHHHHhhhhhhhhcCCCHHHH
Confidence            9999877552     122233333    34556 58999999988753311   001 1333333445544 79999888


Q ss_pred             HHHHHhCCcceecCccchHHHHHHHH-----HHcCCCCcccccccCCC-CCCChhhhHHHHHHHH-hcCCCHHHHHHHHH
Q 007621          231 IKLVSCCPSLLIGGVDSRFVKVLEKL-----KELGFKNDWIGRYLPGK-GSYNWDQVSETLDFLY-KIGYNEVQLLNLFK  303 (595)
Q Consensus       231 ~klv~~~P~lL~~~~~~~l~~~v~~L-----~~lGv~~~~~~~~l~~~-~~~~~~~~~~~l~~l~-~lG~s~~~I~~lv~  303 (595)
                      .++...      ..  +.--+.|..|     .+-||.|+++....+.. .....+.+.+.+-.|. ..|++.++|-.|-.
T Consensus       397 vaiA~~------GG--~qALe~V~~L~p~l~~~~glt~~qvv~IAsn~GGkQALe~V~~llp~L~~~~glt~aqvVaIAs  468 (1047)
T 3ugm_A          397 VAIASN------GG--KQALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQTHGLTPAQVVAIAS  468 (1047)
T ss_dssp             HHHHHH------TH--HHHHHHHHHHHHHHHTTSSCCHHHHHHHHSSTTTHHHHHHHHHHHHHHHTTSCCCHHHHHHHSS
T ss_pred             HHHhcc------cc--hhHHHHHhhccchhhhhcCCCHHHhhhhhccCchHHHHHHHHHHhHHhhcccCCCHHHHHHHHh
Confidence            888642      11  1111122222     23577777766555543 2333445555555565 57888888877665


Q ss_pred             hCCCccccCchhhHHHHHHHHHH-cCCChhHHHHHHhh
Q 007621          304 TNPALVFEGSGQKVYVLFGRLLK-LGLKMNEVYSLFSQ  340 (595)
Q Consensus       304 ~~P~iL~~~~e~~l~~~v~fL~~-lGl~~~~i~~~I~~  340 (595)
                      ..-.--.   -+.+.....-+.. .|++.++|..|...
T Consensus       469 n~GGkQA---LeaV~~llpvl~~~~gls~~qvvaiA~n  503 (1047)
T 3ugm_A          469 HDGGKQA---LETVQQLLPVLCQAHGLTPDQVVAIASN  503 (1047)
T ss_dssp             STTHHHH---HHHHHHHHHHHHHHSCCCSHHHHHHHSS
T ss_pred             cCcHHHH---HHHHHHHHHHHHHhcCCCHHHHHHHHhc
Confidence            5311100   0122222222333 58888888777544

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae}

Probab=93.16  E-value=0.21  Score=55.04  Aligned_cols=143  Identities=15%  Similarity=0.247  Sum_probs=74.3

Q ss_pred             chh-HHHHCCCCcCCCccccCccccccCCcc----hhhhHHHHHh-hcCCCcchHHHHHHhcccccccC-chhhHHHHHH
Q 007621          147 FEP-FFESLGLSQSELSPLLPRHLMFLSDDE----VLLDNFHVLC-DYGIPRSKMGKMYVEATEIFRHD-RGVLASKLWA  219 (595)
Q Consensus       147 l~p-fl~slGls~~~l~~ll~~~~l~~s~d~----~l~p~~~~L~-~~g~s~~~i~~~~k~~p~ll~~~-~~~l~~~l~~  219 (595)
                      |+| ..+..||++.++..|-+.     +.-+    .+...+..|+ .+|++.++|.+|-.....   .. -+.+..-+..
T Consensus       414 L~p~l~~~~glt~~qvv~IAsn-----~GGkQALe~V~~llp~L~~~~glt~aqvVaIAsn~GG---kQALeaV~~llpv  485 (1047)
T 3ugm_A          414 LLPVLCQAHGLTPDQVVAIASH-----DGGKQALETVQRLLPVLCQTHGLTPAQVVAIASHDGG---KQALETVQQLLPV  485 (1047)
T ss_dssp             HHHHHHTTSSCCHHHHHHHHSS-----TTTHHHHHHHHHHHHHHHTTSCCCHHHHHHHSSSTTH---HHHHHHHHHHHHH
T ss_pred             ccchhhhhcCCCHHHhhhhhcc-----CchHHHHHHHHHHhHHhhcccCCCHHHHHHHHhcCcH---HHHHHHHHHHHHH
Confidence            445 445677777777766441     1111    2233344555 578888888876432110   00 1222222223


Q ss_pred             H-HHCCCChHHHHHHHHhCCcceecCccchHHHHHHHHH-----HcCCCCcccccccCCC-CCCChhhhHHHHHHHH-hc
Q 007621          220 Y-ENLGLSKNTVIKLVSCCPSLLIGGVDSRFVKVLEKLK-----ELGFKNDWIGRYLPGK-GSYNWDQVSETLDFLY-KI  291 (595)
Q Consensus       220 L-~~lGls~~~I~klv~~~P~lL~~~~~~~l~~~v~~L~-----~lGv~~~~~~~~l~~~-~~~~~~~~~~~l~~l~-~l  291 (595)
                      | +..|+++++|.++...+=       .+.--+.|..+.     ..|+.++++....+.. .....+.+.+-+-.|+ ..
T Consensus       486 l~~~~gls~~qvvaiA~n~G-------GkQALeaV~~l~p~l~~~~gls~~qVVaIAsN~GGkQALeaV~~~lp~Lr~a~  558 (1047)
T 3ugm_A          486 LCQAHGLTPDQVVAIASNIG-------GKQALATVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAH  558 (1047)
T ss_dssp             HHHHSCCCSHHHHHHHSSTT-------HHHHHHHHHHHSGGGTTTTCCCSHHHHHHHSSTTCHHHHHHHHHHHHHHTTTS
T ss_pred             HHHhcCCCHHHHHHHHhccc-------hHHHHHHHHHhhhhhccccCCCHHHhhhhhcCCcHHHHHHHHHHHhHHHHHHh
Confidence            3 348888888888865421       111222333332     4667777665555443 2334455555556666 47


Q ss_pred             CCCHHHHHHHHHh
Q 007621          292 GYNEVQLLNLFKT  304 (595)
Q Consensus       292 G~s~~~I~~lv~~  304 (595)
                      |+|.++|..|-..
T Consensus       559 ~ls~~qVVaIAsN  571 (1047)
T 3ugm_A          559 GLTPDQVVAIASN  571 (1047)
T ss_dssp             CCTHHHHHHHTTS
T ss_pred             CCCHHHeeeeccC
Confidence            8888877666533

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 4gjr_A* 4gg4_A* 4gjp_A* 3v6p_A 2kq5_A

Probab=86.29  E-value=3.6  Score=42.59  Aligned_cols=296  Identities=14%  Similarity=0.162  Sum_probs=146.5

Q ss_pred             HHHHHHhcCCCCHHHHHHHhcc-----CchHHHHHHh----cCC-CchhHHhhhcc-----ccccCccccchhHHHH-CC
Q 007621           92 LFDYLHSTRSLGYMDAEHISKN-----SPDFVLNLLS----KID-SGKDVTRSLMR-----FLRYNPINEFEPFFES-LG  155 (595)
Q Consensus        92 ~~~YL~~tcgLs~~~A~~~Sk~-----sP~~v~~lL~----~~~-s~~~v~~~~p~-----~L~~~p~~~l~pfl~s-lG  155 (595)
                      +..-|...+|||+++-..|+-|     .-..|..++-    .+| +.++|++--.-     -|-+  ...+.|-|.. .|
T Consensus       125 ~lpvL~~~~~Ls~~qVVaIAsn~GGkQALeaV~~llpvL~~a~gls~~qVvaIAsN~GGkQALea--V~~llpvl~~~~g  202 (499)
T 3v6t_A          125 LLPVLCQAHGLTPEQVVAIASHDGGKQALETVQALLPVLCQAHGLTPEQVVAIASNGGGKQALET--VQRLLPVLCQAHG  202 (499)
T ss_dssp             HHHHHHHTSCCCHHHHHHHHSSTTHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHSSTTHHHHHHH--HHHHHHHHHHHHC
T ss_pred             hhHHhhhhcCCCHHHhHHHhhcCCcHHHHHHHHHhhHHHHHhcCCCHHHHHHHhcccchHHHHHH--HHHhhhhHHhhcc
Confidence            3444444567888877777665     2334443332    366 66665542210     0111  1234565554 78


Q ss_pred             CCcCCCccccCccccccCCcc----hhhhHHHHHhh-cCCCcchHHHHHHhcccccccC-chhhHHHHHHHHH-CCCChH
Q 007621          156 LSQSELSPLLPRHLMFLSDDE----VLLDNFHVLCD-YGIPRSKMGKMYVEATEIFRHD-RGVLASKLWAYEN-LGLSKN  228 (595)
Q Consensus       156 ls~~~l~~ll~~~~l~~s~d~----~l~p~~~~L~~-~g~s~~~i~~~~k~~p~ll~~~-~~~l~~~l~~L~~-lGls~~  228 (595)
                      +++.++..+-+.+     .-+    .+..-.-.||. +|++.++|..|-.....   .. -+.+..-+-.|++ .|++.+
T Consensus       203 ls~~qVVaiAsn~-----GGkQALeaV~~llp~L~~a~~ls~~qVvaIAsN~GG---kQALeaV~~~lpvl~~~~~lt~a  274 (499)
T 3v6t_A          203 LTPQQVVAIASNG-----GGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGG---KQALETVQRLLPVLCQAHGLTPQ  274 (499)
T ss_dssp             CCHHHHHHHHSST-----THHHHHHHHHHHHHHHTTTSCCCHHHHHHHHHSSCH---HHHHHHHHHHHHHHHHHHCCCHH
T ss_pred             CCHHHHHHHhhcc-----chHHHHHHHHHhhhHHHhhcCCCHHHhhhhhcccch---HHHHHHHHHhcccccccccCCHH
Confidence            8888887775411     011    22333445665 78888888877543210   00 1233333334544 799999


Q ss_pred             HHHHHHHhCCc--ceecCccchHHHHHHHHH-HcCCCCcccccccCCC-CCCChhhhHHHHHHHHh-cCCCHHHHHHHHH
Q 007621          229 TVIKLVSCCPS--LLIGGVDSRFVKVLEKLK-ELGFKNDWIGRYLPGK-GSYNWDQVSETLDFLYK-IGYNEVQLLNLFK  303 (595)
Q Consensus       229 ~I~klv~~~P~--lL~~~~~~~l~~~v~~L~-~lGv~~~~~~~~l~~~-~~~~~~~~~~~l~~l~~-lG~s~~~I~~lv~  303 (595)
                      +|.++-...-.  .|    + .+....-.|+ ..|+.+.++....+.. .....+.+.+-.-.|+. +|++.+++..|-.
T Consensus       275 qVVaIAsn~GGkQAL----e-aV~~llpvL~~~~~L~~~qVvaIAsN~GGkQALeaV~~l~p~L~~a~gls~~qVVaIAs  349 (499)
T 3v6t_A          275 QVVAIASNSGGKQAL----E-TVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIAS  349 (499)
T ss_dssp             HHHHHHSSTTHHHHH----H-HHHHHHHHHHTTTCSCHHHHHHHHTSTTHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHS
T ss_pred             HeeeeccCCccHHHH----H-HHHHhhHHHHHhcCCCHHHHHHHhhCCchHHHHHHHHHHhHHHHHhcCCCHHHHHHHhc
Confidence            99888532200  00    0 0111122223 2466666665555432 23334555555666664 8999999887764


Q ss_pred             hCCCccccCchhhHHHHHHHHHH-cCCChhHHHHHHhhCCceeeccccccHHHHHHHH-HHhCCChhhHHHHHHhcCccc
Q 007621          304 TNPALVFEGSGQKVYVLFGRLLK-LGLKMNEVYSLFSQNPQILSSKFVKNLLQAVGFL-IEIGMGMKDISNMVLMHAELM  381 (595)
Q Consensus       304 ~~P~iL~~~~e~~l~~~v~fL~~-lGl~~~~i~~~I~~~P~lL~~sle~~l~p~~~fL-~~~Gl~~~~I~~il~~~P~lL  381 (595)
                      ..-.==   --+.+....--|+. .|++.++|..+-...-.--.  +| -+..-.-.| ...|++.++|..+-....-==
T Consensus       350 n~GGkQ---ALeaV~~llpvL~~a~~Ls~~qVVaIAsn~GGkqA--Le-aV~~llpvl~~~~~Ls~aqVVaIAsn~GGkQ  423 (499)
T 3v6t_A          350 HDGGKQ---ALETVQRLLPVLCQAHGLTPEQVVAIASNGGGKQA--LE-TVQRLLPVLCQAHGLTPEQVVAIASHDGGKQ  423 (499)
T ss_dssp             STTHHH---HHHHHHHHHHHHHHTTCCCHHHHHHHHSSTTHHHH--HH-HHHHHHHHHHHHHCCCHHHHHHHHSSTTHHH
T ss_pred             cCccHH---HHHHHHHhCcchHhhhcCCHHHHHhHHhccccHHH--HH-HHHHHHHHhhhhccCCHHHeeehhccCccHH
Confidence            431100   01233333344454 49999998776443211000  11 111112233 257888888876632110000


Q ss_pred             ccccccchHHHHHh-cCCChhHHHHHHH
Q 007621          382 GSCSLKGPKTVCSK-LKVGRESLCQIIK  408 (595)
Q Consensus       382 ~~s~lk~~i~~L~~-lGv~~~~l~~lI~  408 (595)
                      ....++...-.|+. .|++..++..|-.
T Consensus       424 ALeaV~~~lpvLr~~~glt~aqVVaIAs  451 (499)
T 3v6t_A          424 ALETVQRLLPVLCQAHGLTPQQVVAIAS  451 (499)
T ss_dssp             HHHHHHHHHHHHHHTTCCCHHHHHHHHS
T ss_pred             HHHHHHHhhhHHHHHhCCCHHHHHhhhh
Confidence            00012333445555 7998877665544

>3ff5_A PEX14P, peroxisomal biogenesis factor 14; protein import, peroxin, 3 helices bundle, protein transport; HET: DPW; 1.80A {Rattus norvegicus}

Probab=82.15  E-value=1.2  Score=32.90  Aligned_cols=34  Identities=21%  Similarity=0.229  Sum_probs=21.1

Q ss_pred             hhCCceeeccccccHHHHHHHHHHhCCChhhHHHHHHh
Q 007621          339 SQNPQILSSKFVKNLLQAVGFLIEIGMGMKDISNMVLM  376 (595)
Q Consensus       339 ~~~P~lL~~sle~~l~p~~~fL~~~Gl~~~~I~~il~~  376 (595)
                      .+.|.+-..++    ..++.||+..|+++++|...+.+
T Consensus        20 L~dp~V~~sp~----~~K~~FL~sKGLt~~EI~~Al~r   53 (54)
T 3ff5_A           20 LQNSRVRQSPL----ATRRAFLKKKGLTDEEIDLAFQQ   53 (54)
T ss_dssp             HHCTTGGGSCH----HHHHHHHHHTTCCHHHHHHHHHH
T ss_pred             hCChhhhcCCH----HHHHHHHHHcCCCHHHHHHHHHc
Confidence            34455544443    34677777777777777776654

>4hpz_A Dtale2; DNA binding protein, N-terminal domain; 2.20A {Xanthomonas}

Probab=80.62  E-value=8.1  Score=39.63  Aligned_cols=238  Identities=16%  Similarity=0.166  Sum_probs=115.3

Q ss_pred             HHHHHHHHhcCCCCHHHHHHHhccC-----chHHHHHHh---c-CC-CchhHHhhhc-----cccccCccccchhHH-HH
Q 007621           90 EVLFDYLHSTRSLGYMDAEHISKNS-----PDFVLNLLS---K-ID-SGKDVTRSLM-----RFLRYNPINEFEPFF-ES  153 (595)
Q Consensus        90 ~~~~~YL~~tcgLs~~~A~~~Sk~s-----P~~v~~lL~---~-~~-s~~~v~~~~p-----~~L~~~p~~~l~pfl-~s  153 (595)
                      ..+..-|...+|||+++-..|+.|.     -.+|.+++.   . ++ +.++|++--.     .-|-+  ...++|-| +.
T Consensus       164 ~~llpvL~~a~~Ls~~qVVaIAsn~GGkQALeaV~~llpvl~~~~~Ls~aqVVaIAsn~GGkQALea--V~~llpvl~~~  241 (463)
T 4hpz_A          164 QRLLPVLCQDHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALET--VQRLLPVLCQD  241 (463)
T ss_dssp             HHHHHHHHHHHCCCHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHSSTTHHHHHHH--HHHHHHHHHHH
T ss_pred             HHHHHHHhhhcCCCHHHHHHHhhcCchHHHHHHHHHHHHHhhccccCCHHHHHHHhhccccHHHHHH--HHhhhhhhhhh
Confidence            3344445445788888888887763     345544433   2 45 6666554221     00111  11255644 34


Q ss_pred             CCCCcCCCccccCccccccCCcchhhhHHHHHhh-cCCCcchHHHHHHhcccccccC-chhhHHHHHHHHH-CCCChHHH
Q 007621          154 LGLSQSELSPLLPRHLMFLSDDEVLLDNFHVLCD-YGIPRSKMGKMYVEATEIFRHD-RGVLASKLWAYEN-LGLSKNTV  230 (595)
Q Consensus       154 lGls~~~l~~ll~~~~l~~s~d~~l~p~~~~L~~-~g~s~~~i~~~~k~~p~ll~~~-~~~l~~~l~~L~~-lGls~~~I  230 (595)
                      .||++.++..|-...- -..--..+..-.-.|+. +|++.++|..|-..+..   .. -+.+..-.-.|++ .|++.++|
T Consensus       242 ~gls~aqVVaIAsn~G-GkQALeaV~~llP~L~~~~gls~~qVVaIAsN~GG---kQALeaV~~l~p~Lr~~~~ls~~qV  317 (463)
T 4hpz_A          242 HGLTPQQVVAIASNIG-GKQALETVQRLLPVLCQDHGLTPDQVVAIASNDGG---KQALETVQRLLPVLCQDHGLTPEQV  317 (463)
T ss_dssp             SCCCHHHHHHHHSSTT-HHHHHHHHHHHHHHHHHTTCCCHHHHHHHHTSTTH---HHHHHHHHHHHHHHHHHHCCCHHHH
T ss_pred             ccCCHHHHHHHhcccc-hHHHHHHHHhhchhhhhccCCCHHHhhhhhcCccH---HHHHHHHHHHhHHHHhhcCCCHHHh
Confidence            7888888877744100 00000122233345555 78888888876533210   00 1233333334444 68888888


Q ss_pred             HHHHHhCCcceecCccchHHHHHHHHHHcCCCCcccccccCCCCCCChhhhHHHHHHHH-hcCCCHHHHHHHHHhCCCcc
Q 007621          231 IKLVSCCPSLLIGGVDSRFVKVLEKLKELGFKNDWIGRYLPGKGSYNWDQVSETLDFLY-KIGYNEVQLLNLFKTNPALV  309 (595)
Q Consensus       231 ~klv~~~P~lL~~~~~~~l~~~v~~L~~lGv~~~~~~~~l~~~~~~~~~~~~~~l~~l~-~lG~s~~~I~~lv~~~P~iL  309 (595)
                      .++-.+.         . =+..++.++.                         -.-.|+ ..|++.++|..|-...-.-=
T Consensus       318 VaIAsN~---------G-GkQALeaV~~-------------------------llp~Lr~~~~ls~~qVvaIAsn~GGkQ  362 (463)
T 4hpz_A          318 VAIASNG---------G-GKQALETVQR-------------------------LLPVLCQAHGLTPDQVVAIASHDGGKQ  362 (463)
T ss_dssp             HHHHSST---------T-HHHHHHHHHH-------------------------HHHHHHHHSCCCHHHHHHHHTSTTHHH
T ss_pred             hhhhcCc---------c-hHHHHHHHHH-------------------------hhhhcchhccCCHHHhHhhhhcCccHH
Confidence            8774321         0 1223333322                         333445 37778777776664321100


Q ss_pred             ccCchhhHHHHHHHHHH-cCCChhHHHHHHhhCCceeeccccccHHHHHHHHH-HhCCChhhHHHHH
Q 007621          310 FEGSGQKVYVLFGRLLK-LGLKMNEVYSLFSQNPQILSSKFVKNLLQAVGFLI-EIGMGMKDISNMV  374 (595)
Q Consensus       310 ~~~~e~~l~~~v~fL~~-lGl~~~~i~~~I~~~P~lL~~sle~~l~p~~~fL~-~~Gl~~~~I~~il  374 (595)
                         --+.+....--|+. .|++.++|..+-...-.=-..  | -+..-.-.|. ..|++..+|..+-
T Consensus       363 ---ALeaV~~llpvL~~a~gls~aqVVaIAsn~GGkQAL--e-aV~~llpvL~~a~gls~~qVVaIA  423 (463)
T 4hpz_A          363 ---ALETVQRLLPVLCQDHGLTPAQAVAIANNNGGKQAL--E-TVQRLLPVLCQDHGLTPDQVVAIA  423 (463)
T ss_dssp             ---HHHHHHHHHHHHHHHSCCCHHHHHHHHSSSSCHHHH--H-HHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred             ---HHHHHHHHhHHHHHHhCCCHHHhhhhhccCccHHHH--H-HHHHhchhhhhhccCCHHHhhhhh
Confidence               11233444444554 578877776664443211111  0 1111222332 3677777777664

>4hpz_A Dtale2; DNA binding protein, N-terminal domain; 2.20A {Xanthomonas}

Probab=80.51  E-value=3.6  Score=42.18  Aligned_cols=206  Identities=17%  Similarity=0.179  Sum_probs=116.0

Q ss_pred             HHHHHHHhcCCCCHHHHHHHhccC-----chHHHHHHh----cCC-CchhHHhhhc-----cccccCccccchhHHHH-C
Q 007621           91 VLFDYLHSTRSLGYMDAEHISKNS-----PDFVLNLLS----KID-SGKDVTRSLM-----RFLRYNPINEFEPFFES-L  154 (595)
Q Consensus        91 ~~~~YL~~tcgLs~~~A~~~Sk~s-----P~~v~~lL~----~~~-s~~~v~~~~p-----~~L~~~p~~~l~pfl~s-l  154 (595)
                      .+..-|...+|||+++-..|+-|.     -.+|..++-    .+| +.++|++--.     .-|-+  ...++|-|.. .
T Consensus       199 ~llpvl~~~~~Ls~aqVVaIAsn~GGkQALeaV~~llpvl~~~~gls~aqVVaIAsn~GGkQALea--V~~llP~L~~~~  276 (463)
T 4hpz_A          199 RLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQDHGLTPQQVVAIASNIGGKQALET--VQRLLPVLCQDH  276 (463)
T ss_dssp             HHHHHHHHHHCCCHHHHHHHHSSTTHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHSSTTHHHHHHH--HHHHHHHHHHTT
T ss_pred             HHHHHhhccccCCHHHHHHHhhccccHHHHHHHHhhhhhhhhhccCCHHHHHHHhcccchHHHHHH--HHhhchhhhhcc
Confidence            344555555899999999998873     445544332    367 8887665321     01111  2336676666 8


Q ss_pred             CCCcCCCccccCccccccCCcchhhhHHHHHhh-cCCCcchHHHHHHhcccccccC-chhhHHHHHHHH-HCCCChHHHH
Q 007621          155 GLSQSELSPLLPRHLMFLSDDEVLLDNFHVLCD-YGIPRSKMGKMYVEATEIFRHD-RGVLASKLWAYE-NLGLSKNTVI  231 (595)
Q Consensus       155 Gls~~~l~~ll~~~~l~~s~d~~l~p~~~~L~~-~g~s~~~i~~~~k~~p~ll~~~-~~~l~~~l~~L~-~lGls~~~I~  231 (595)
                      |+++.++..+-+.+-=-..+ ..+..-.-.||. +|++.++|..|-.....   .. -+.+..-.-.|+ ..|++.++|.
T Consensus       277 gls~~qVVaIAsN~GGkQAL-eaV~~l~p~Lr~~~~ls~~qVVaIAsN~GG---kQALeaV~~llp~Lr~~~~ls~~qVv  352 (463)
T 4hpz_A          277 GLTPDQVVAIASNDGGKQAL-ETVQRLLPVLCQDHGLTPEQVVAIASNGGG---KQALETVQRLLPVLCQAHGLTPDQVV  352 (463)
T ss_dssp             CCCHHHHHHHHTSTTHHHHH-HHHHHHHHHHHHHHCCCHHHHHHHHSSTTH---HHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred             CCCHHHhhhhhcCccHHHHH-HHHHHHhHHHHhhcCCCHHHhhhhhcCcch---HHHHHHHHHhhhhcchhccCCHHHhH
Confidence            99999998885521000000 123333456665 89999999987533110   00 133333444555 4899999999


Q ss_pred             HHHHhCCcceecCccchHHHHHHHHHHcCCCCcccccccCCCCCCChhhhHHHHHHHHh-cCCCHHHHHHHHHhCCCccc
Q 007621          232 KLVSCCPSLLIGGVDSRFVKVLEKLKELGFKNDWIGRYLPGKGSYNWDQVSETLDFLYK-IGYNEVQLLNLFKTNPALVF  310 (595)
Q Consensus       232 klv~~~P~lL~~~~~~~l~~~v~~L~~lGv~~~~~~~~l~~~~~~~~~~~~~~l~~l~~-lG~s~~~I~~lv~~~P~iL~  310 (595)
                      ++-.+.          .=+..++.++.                         -.-.|+. +|++.++|..|-...-.-= 
T Consensus       353 aIAsn~----------GGkQALeaV~~-------------------------llpvL~~a~gls~aqVVaIAsn~GGkQ-  396 (463)
T 4hpz_A          353 AIASHD----------GGKQALETVQR-------------------------LLPVLCQDHGLTPAQAVAIANNNGGKQ-  396 (463)
T ss_dssp             HHHTST----------THHHHHHHHHH-------------------------HHHHHHHHSCCCHHHHHHHHSSSSCHH-
T ss_pred             hhhhcC----------ccHHHHHHHHH-------------------------HhHHHHHHhCCCHHHhhhhhccCccHH-
Confidence            985321          12344444433                         3345553 7888888877766542100 


Q ss_pred             cCchhhHHHHHHHHHH-cCCChhHHHHHHhh
Q 007621          311 EGSGQKVYVLFGRLLK-LGLKMNEVYSLFSQ  340 (595)
Q Consensus       311 ~~~e~~l~~~v~fL~~-lGl~~~~i~~~I~~  340 (595)
                        --+.+....--|+. .|++.++|..+-..
T Consensus       397 --ALeaV~~llpvL~~a~gls~~qVVaIAsn  425 (463)
T 4hpz_A          397 --ALETVQRLLPVLCQDHGLTPDQVVAIASN  425 (463)
T ss_dssp             --HHHHHHHHHHHHHHHSCCCHHHHHHHHTT
T ss_pred             --HHHHHHHhchhhhhhccCCHHHhhhhhhc
Confidence              11233334444444 58888888766543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00